Citrus Sinensis ID: 036068

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------18
Protein Sequence
MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACTHN
Secondary Structure (PSIPRED)
cccccHHHHHHHHHHHHHcccHHHHHHHHcccccccccHHHHHHHHHHccccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccccHHHHHHHHHHHccccccccccHHcHHHHHHHHHccccHHHHHHHHHHHHHccccccccHHHHHHHccccc
Secondary Structure Prediction (SSPRO)
ccccccHHHHHHHHHHHHcccHHHHHHHHHHccccccEHHHHHHHHHHHcccHHHHHHHHHHHHHcccccccHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHcccccccEEHHHHHHHHccc
Coil and Loop (DISEMBL)
MKNKDVISWTAIVSRYINRGQVDIARQcfdqmperdYVLWTAMIDGYLRVNRFREALTLFQEMqtsnimgdefTIVSILTARANLRALDLGEWIKTYidknkvkndifAGNALIDMYCICADVEKAQKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACTHN
Flexible Loop (DISEMBL)
mknkdvisWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEmqtsnimgdEFTIVSILTARANLRALDLGEWIktyidknkvkNDIFAGNALIDMYCICADVEKAQKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACTHN
Low Complexity Region (SEG)
MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACTHN
Disordered region (IsUnstruct)
*****VISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC***
Disordered Region (DISOPRED)
*KNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACTHN
Disordered Region (DISEMBL)
MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACTHN
Disordered Region (DISPRO)
***KDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACTHN
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACTHN
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	178	2.2.26 [Sep-21-2011]
Q9LSB8	687	Putative pentatricopeptid	yes	no	1.0	0.259	0.575	7e-59
Q9C866	570	Pentatricopeptide repeat-	no	no	1.0	0.312	0.430	3e-41
Q9SJZ3	681	Pentatricopeptide repeat-	no	no	0.994	0.259	0.4	1e-39
Q9SJG6	559	Pentatricopeptide repeat-	no	no	0.977	0.311	0.406	3e-38
Q9MA50	500	Pentatricopeptide repeat-	no	no	0.994	0.354	0.394	1e-36
Q9FG16	622	Pentatricopeptide repeat-	no	no	1.0	0.286	0.381	3e-36
Q683I9	573	Pentatricopeptide repeat-	no	no	0.983	0.305	0.389	6e-36
Q9SIL5	534	Pentatricopeptide repeat-	no	no	0.994	0.331	0.389	8e-35
Q38959	455	Pentatricopeptide repeat-	no	no	0.983	0.384	0.391	2e-34
Q1PEU4	555	Pentatricopeptide repeat-	no	no	0.988	0.317	0.397	2e-34

>sp|Q9LSB8|PP235_ARATH Putative pentatricopeptide repeat-containing protein At3g15930 OS=Arabidopsis thaliana GN=PCMP-E51 PE=3 SV=2

 Score =  226 bits (575), Expect = 7e-59,   Method: Compositional matrix adjust.
 Identities = 107/186 (57%), Positives = 139/186 (74%), Gaps = 8/186 (4%)

Query: 1   MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
           MK +DVISWT+IV  Y+ RG + +AR  FDQMP RD + WT MIDGYLR   F E+L +F
Sbjct: 297 MKARDVISWTSIVKGYVERGNLKLARTYFDQMPVRDRISWTIMIDGYLRAGCFNESLEIF 356

Query: 61  QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
           +EMQ++ ++ DEFT+VS+LTA A+L +L++GEWIKTYIDKNK+KND+  GNALIDMY  C
Sbjct: 357 REMQSAGMIPDEFTMVSVLTACAHLGSLEIGEWIKTYIDKNKIKNDVVVGNALIDMYFKC 416

Query: 121 ADVEKAQK--------DKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVL 172
              EKAQK        DKF+WT M+VGLA +G G +A+ +F QM   SI+PD++ Y+GVL
Sbjct: 417 GCSEKAQKVFHDMDQRDKFTWTAMVVGLANNGQGQEAIKVFFQMQDMSIQPDDITYLGVL 476

Query: 173 SACTHN 178
           SAC H+
Sbjct: 477 SACNHS 482

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C866|PPR65_ARATH Pentatricopeptide repeat-containing protein At1g31430 OS=Arabidopsis thaliana GN=PCMP-E55 PE=2 SV=1

 Score =  167 bits (423), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 80/186 (43%), Positives = 122/186 (65%), Gaps = 8/186 (4%)

Query: 1   MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
           M++K+V  WT++V  Y++ G++D AR  F++ P +D VLWTAM++GY++ NRF EAL LF
Sbjct: 208 MRDKNVKCWTSMVFGYVSTGRIDEARVLFERSPVKDVVLWTAMMNGYVQFNRFDEALELF 267

Query: 61  QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
           + MQT+ I  D F +VS+LT  A   AL+ G+WI  YI++N+V  D   G AL+DMY  C
Sbjct: 268 RCMQTAGIRPDNFVLVSLLTGCAQTGALEQGKWIHGYINENRVTVDKVVGTALVDMYAKC 327

Query: 121 ADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVL 172
             +E A        ++D  SWT++I GLA++G   +ALD++ +M    ++ D + +V VL
Sbjct: 328 GCIETALEVFYEIKERDTASWTSLIYGLAMNGMSGRALDLYYEMENVGVRLDAITFVAVL 387

Query: 173 SACTHN 178
           +AC H 
Sbjct: 388 TACNHG 393

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SJZ3|PP169_ARATH Pentatricopeptide repeat-containing protein At2g22410, mitochondrial OS=Arabidopsis thaliana GN=PCMP-E28 PE=2 SV=1

 Score =  162 bits (409), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 74/185 (40%), Positives = 119/185 (64%), Gaps = 8/185 (4%)

Query: 1   MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
           ++ + ++SWT ++S Y   G +D++R+ FD M E+D VLW AMI G ++  R ++AL LF
Sbjct: 318 LEKRTIVSWTTMISGYARCGLLDVSRKLFDDMEEKDVVLWNAMIGGSVQAKRGQDALALF 377

Query: 61  QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
           QEMQTSN   DE T++  L+A + L ALD+G WI  YI+K  +  ++  G +L+DMY  C
Sbjct: 378 QEMQTSNTKPDEITMIHCLSACSQLGALDVGIWIHRYIEKYSLSLNVALGTSLVDMYAKC 437

Query: 121 ADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVL 172
            ++ +A         ++  ++T +I GLA+ G+   A+  F++M+ A I PDE+ ++G+L
Sbjct: 438 GNISEALSVFHGIQTRNSLTYTAIIGGLALHGDASTAISYFNEMIDAGIAPDEITFIGLL 497

Query: 173 SACTH 177
           SAC H
Sbjct: 498 SACCH 502

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SJG6|PP200_ARATH Pentatricopeptide repeat-containing protein At2g42920, chloroplastic OS=Arabidopsis thaliana GN=PCMP-E75 PE=2 SV=1

 Score =  157 bits (397), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 74/182 (40%), Positives = 121/182 (66%), Gaps = 8/182 (4%)

Query: 5   DVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQ 64
           DV++W +++  +   G +D A+  FD+MP+R+ V W +MI G++R  RF++AL +F+EMQ
Sbjct: 191 DVVAWNSMIMGFAKCGLIDQAQNLFDEMPQRNGVSWNSMISGFVRNGRFKDALDMFREMQ 250

Query: 65  TSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVE 124
             ++  D FT+VS+L A A L A + G WI  YI +N+ + +     ALIDMYC C  +E
Sbjct: 251 EKDVKPDGFTMVSLLNACAYLGASEQGRWIHEYIVRNRFELNSIVVTALIDMYCKCGCIE 310

Query: 125 K-------AQKDKFS-WTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACT 176
           +       A K + S W +MI+GLA +G  ++A+D+FS++ R+ ++PD V+++GVL+AC 
Sbjct: 311 EGLNVFECAPKKQLSCWNSMILGLANNGFEERAMDLFSELERSGLEPDSVSFIGVLTACA 370

Query: 177 HN 178
           H+
Sbjct: 371 HS 372

Arabidopsis thaliana (taxid: 3702)

>sp|Q9MA50|PPR13_ARATH Pentatricopeptide repeat-containing protein At1g05750, chloroplastic OS=Arabidopsis thaliana GN=PDE247 PE=2 SV=1

 Score =  152 bits (384), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 73/185 (39%), Positives = 109/185 (58%), Gaps = 8/185 (4%)

Query: 1   MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
           M++K+ ++W  ++  Y+  GQVD A + FD+MPERD + WTAMI+G+++     EAL  F
Sbjct: 135 MEDKNSVTWNTMIDGYMRSGQVDNAAKMFDKMPERDLISWTAMINGFVKKGYQEEALLWF 194

Query: 61  QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
           +EMQ S +  D   I++ L A  NL AL  G W+  Y+     KN++   N+LID+YC C
Sbjct: 195 REMQISGVKPDYVAIIAALNACTNLGALSFGLWVHRYVLSQDFKNNVRVSNSLIDLYCRC 254

Query: 121 ADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVL 172
             VE A        ++   SW ++IVG A +GN  ++L  F +M     KPD V + G L
Sbjct: 255 GCVEFARQVFYNMEKRTVVSWNSVIVGFAANGNAHESLVYFRKMQEKGFKPDAVTFTGAL 314

Query: 173 SACTH 177
           +AC+H
Sbjct: 315 TACSH 319

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FG16|PP367_ARATH Pentatricopeptide repeat-containing protein At5g06540 OS=Arabidopsis thaliana GN=PCMP-H88 PE=2 SV=1

 Score =  151 bits (381), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 71/186 (38%), Positives = 116/186 (62%), Gaps = 8/186 (4%)

Query: 1   MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
           M  +DV+SWT++V+ Y   G V+ AR+ FD+MP R+   W+ MI+GY + N F +A+ LF
Sbjct: 178 MGFRDVVSWTSMVAGYCKCGMVENAREMFDEMPHRNLFTWSIMINGYAKNNCFEKAIDLF 237

Query: 61  QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
           + M+   ++ +E  +VS++++ A+L AL+ GE    Y+ K+ +  ++  G AL+DM+  C
Sbjct: 238 EFMKREGVVANETVMVSVISSCAHLGALEFGERAYEYVVKSHMTVNLILGTALVDMFWRC 297

Query: 121 ADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVL 172
            D+EKA        + D  SW+++I GLA+ G+  KA+  FSQM+     P +V +  VL
Sbjct: 298 GDIEKAIHVFEGLPETDSLSWSSIIKGLAVHGHAHKAMHYFSQMISLGFIPRDVTFTAVL 357

Query: 173 SACTHN 178
           SAC+H 
Sbjct: 358 SACSHG 363

Arabidopsis thaliana (taxid: 3702)

>sp|Q683I9|PP295_ARATH Pentatricopeptide repeat-containing protein At3g62890 OS=Arabidopsis thaliana GN=PCMP-H82 PE=2 SV=1

 Score =  149 bits (377), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 74/190 (38%), Positives = 118/190 (62%), Gaps = 15/190 (7%)

Query: 3   NKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQE 62
           +KD+ +W ++V+ Y   G +D AR+ FD+MPER+ + W+ +I+GY+   +++EAL LF+E
Sbjct: 125 SKDLPAWNSVVNAYAKAGLIDDARKLFDEMPERNVISWSCLINGYVMCGKYKEALDLFRE 184

Query: 63  MQTSN-----IMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMY 117
           MQ        +  +EFT+ ++L+A   L AL+ G+W+  YIDK  V+ DI  G ALIDMY
Sbjct: 185 MQLPKPNEAFVRPNEFTMSTVLSACGRLGALEQGKWVHAYIDKYHVEIDIVLGTALIDMY 244

Query: 118 CICADVEKA---------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRA-SIKPDEVA 167
             C  +E+A         +KD  +++ MI  LA+ G  D+   +FS+M  + +I P+ V 
Sbjct: 245 AKCGSLERAKRVFNALGSKKDVKAYSAMICCLAMYGLTDECFQLFSEMTTSDNINPNSVT 304

Query: 168 YVGVLSACTH 177
           +VG+L AC H
Sbjct: 305 FVGILGACVH 314

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SIL5|PP165_ARATH Pentatricopeptide repeat-containing protein At2g20540 OS=Arabidopsis thaliana GN=PCMP-E78 PE=2 SV=1

 Score =  146 bits (368), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 72/185 (38%), Positives = 110/185 (59%), Gaps = 8/185 (4%)

Query: 1   MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
           M  +DVISW +++S Y   GQ+  A+  F  M ++  V WTAMI GY  +  + EA+  F
Sbjct: 170 MYERDVISWNSLLSGYARLGQMKKAKGLFHLMLDKTIVSWTAMISGYTGIGCYVEAMDFF 229

Query: 61  QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
           +EMQ + I  DE +++S+L + A L +L+LG+WI  Y ++          NALI+MY  C
Sbjct: 230 REMQLAGIEPDEISLISVLPSCAQLGSLELGKWIHLYAERRGFLKQTGVCNALIEMYSKC 289

Query: 121 ADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVL 172
             + +A         KD  SW+TMI G A  GN   A++ F++M RA +KP+ + ++G+L
Sbjct: 290 GVISQAIQLFGQMEGKDVISWSTMISGYAYHGNAHGAIETFNEMQRAKVKPNGITFLGLL 349

Query: 173 SACTH 177
           SAC+H
Sbjct: 350 SACSH 354

Arabidopsis thaliana (taxid: 3702)

>sp|Q38959|PP257_ARATH Pentatricopeptide repeat-containing protein At3g26630, chloroplastic OS=Arabidopsis thaliana GN=PCMP-A6 PE=2 SV=1

 Score =  145 bits (365), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 72/184 (39%), Positives = 106/184 (57%), Gaps = 9/184 (4%)

Query: 1   MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
           M  + ++SWT ++   ++  Q+D A   F+QMP R+ V WTAMI  Y++  R  EA  LF
Sbjct: 180 MPGRSIVSWTTMLYGLVSNSQLDSAEIVFNQMPMRNVVSWTAMITAYVKNRRPDEAFQLF 239

Query: 61  QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
           + MQ  ++  +EFTIV++L A   L +L +G W+  Y  KN    D F G ALIDMY  C
Sbjct: 240 RRMQVDDVKPNEFTIVNLLQASTQLGSLSMGRWVHDYAHKNGFVLDCFLGTALIDMYSKC 299

Query: 121 ADVEKAQ--------KDKFSWTTMIVGLAISGNGDKALDMF-SQMLRASIKPDEVAYVGV 171
             ++ A+        K   +W +MI  L + G G++AL +F      AS++PD + +VGV
Sbjct: 300 GSLQDARKVFDVMQGKSLATWNSMITSLGVHGCGEEALSLFEEMEEEASVEPDAITFVGV 359

Query: 172 LSAC 175
           LSAC
Sbjct: 360 LSAC 363

Arabidopsis thaliana (taxid: 3702)

>sp|Q1PEU4|PP201_ARATH Pentatricopeptide repeat-containing protein At2g44880 OS=Arabidopsis thaliana GN=PCMP-E9 PE=2 SV=2

 Score =  145 bits (365), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 74/186 (39%), Positives = 111/186 (59%), Gaps = 10/186 (5%)

Query: 1   MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
           M +K VI+WT ++  Y N   +D AR+ FD MPER+ V W  MI GY +  + +E + LF
Sbjct: 202 MTHKTVITWTTMIHGYCNIKDIDAARKLFDAMPERNLVSWNTMIGGYCQNKQPQEGIRLF 261

Query: 61  QEMQ-TSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCI 119
           QEMQ T+++  D+ TI+S+L A ++  AL LGEW   ++ + K+   +    A++DMY  
Sbjct: 262 QEMQATTSLDPDDVTILSVLPAISDTGALSLGEWCHCFVQRKKLDKKVKVCTAILDMYSK 321

Query: 120 CADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGV 171
           C ++EKA        +K   SW  MI G A++GN   ALD+F  M+    KPDE+  + V
Sbjct: 322 CGEIEKAKRIFDEMPEKQVASWNAMIHGYALNGNARAALDLFVTMMIEE-KPDEITMLAV 380

Query: 172 LSACTH 177
           ++AC H
Sbjct: 381 ITACNH 386

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	178
255553251	512	pentatricopeptide repeat-containing prot	0.994	0.345	0.697	4e-70
449491161	744	PREDICTED: LOW QUALITY PROTEIN: putative	0.994	0.237	0.654	8e-69
356528966	712	PREDICTED: putative pentatricopeptide re	0.994	0.248	0.675	9e-69
449436619	723	PREDICTED: putative pentatricopeptide re	0.994	0.244	0.654	1e-68
224134923	635	predicted protein [Populus trichocarpa]	0.977	0.274	0.692	3e-68
357468161	874	Pentatricopeptide repeat-containing prot	0.994	0.202	0.659	4e-67
225442904	724	PREDICTED: putative pentatricopeptide re	1.0	0.245	0.661	9e-66
15233234	687	pentatricopeptide repeat-containing prot	1.0	0.259	0.575	3e-57
9294596	695	unnamed protein product [Arabidopsis tha	1.0	0.256	0.575	4e-57
242051881	627	hypothetical protein SORBIDRAFT_03g00412	0.994	0.282	0.524	2e-53

>gi|255553251|ref|XP_002517668.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] gi|223543300|gb|EEF44832.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis]

 Score =  268 bits (686), Expect = 4e-70,   Method: Compositional matrix adjust.
 Identities = 129/185 (69%), Positives = 152/185 (82%), Gaps = 8/185 (4%)

Query: 1   MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
           MK++DVISWTAIV+ + N GQ+DIAR+ FDQMPERDYV WTAMIDGYL+VN F+EAL LF
Sbjct: 250 MKSRDVISWTAIVTGFANIGQLDIARKYFDQMPERDYVSWTAMIDGYLQVNCFKEALVLF 309

Query: 61  QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
            EMQTSN+  DEFT+VSILTA A L AL+LGEW++TYIDKNKVKND + GNALIDMY  C
Sbjct: 310 HEMQTSNVKPDEFTMVSILTACAQLGALELGEWVRTYIDKNKVKNDAYVGNALIDMYFKC 369

Query: 121 ADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVL 172
            +VEKA        + DKF+WT MIVGLAI+G G++ALDMF QML+AS+ PDE+ YVGVL
Sbjct: 370 GNVEKARSIFNSMPRPDKFTWTAMIVGLAINGYGEEALDMFVQMLKASVTPDEITYVGVL 429

Query: 173 SACTH 177
            ACTH
Sbjct: 430 CACTH 434

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449491161|ref|XP_004158817.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide repeat-containing protein At3g15930-like [Cucumis sativus]

 Score =  264 bits (675), Expect = 8e-69,   Method: Compositional matrix adjust.
 Identities = 121/185 (65%), Positives = 152/185 (82%), Gaps = 8/185 (4%)

Query: 1   MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
           M N+D+ISWT IVS + N G++D+AR  FD+MPE+DYV WTAMIDGY+R NRF+EAL LF
Sbjct: 301 MNNRDIISWTTIVSGFTNLGEIDVARNYFDKMPEKDYVSWTAMIDGYIRSNRFKEALELF 360

Query: 61  QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
           + MQ +N+  DEFT+VS+LTA A+L AL+LGEWI+TYID+NK+KND+F  NALIDMY  C
Sbjct: 361 RNMQATNVKPDEFTMVSVLTACAHLGALELGEWIRTYIDRNKIKNDLFVRNALIDMYFKC 420

Query: 121 ADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVL 172
            DV+KA        Q+DKF+WT MIVGLA++G+G+KALDMFS ML+ASI PDE+ Y+GVL
Sbjct: 421 GDVDKAESIFREMSQRDKFTWTAMIVGLAVNGHGEKALDMFSNMLKASILPDEITYIGVL 480

Query: 173 SACTH 177
           SACTH
Sbjct: 481 SACTH 485

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356528966|ref|XP_003533068.1| PREDICTED: putative pentatricopeptide repeat-containing protein At3g15930-like [Glycine max]

 Score =  264 bits (675), Expect = 9e-69,   Method: Compositional matrix adjust.
 Identities = 125/185 (67%), Positives = 150/185 (81%), Gaps = 8/185 (4%)

Query: 1   MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
           MKN+DVISWT+IV+ + N GQ+D+AR+ FDQ+PERDYV WTAMIDGYLR+NRF EAL LF
Sbjct: 269 MKNRDVISWTSIVTGFANIGQIDLARKYFDQIPERDYVSWTAMIDGYLRMNRFIEALALF 328

Query: 61  QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
           +EMQ SN+  DEFT+VSILTA A+L AL+LGEW+KTYIDKN +KND F GNALIDMY  C
Sbjct: 329 REMQMSNVKPDEFTMVSILTACAHLGALELGEWVKTYIDKNSIKNDTFVGNALIDMYFKC 388

Query: 121 ADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVL 172
            +V KA         KDKF+WT MIVGLAI+G+G++AL MFS M+ ASI PDE+ Y+GVL
Sbjct: 389 GNVGKAKKVFKEMHHKDKFTWTAMIVGLAINGHGEEALAMFSNMIEASITPDEITYIGVL 448

Query: 173 SACTH 177
            ACTH
Sbjct: 449 CACTH 453

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449436619|ref|XP_004136090.1| PREDICTED: putative pentatricopeptide repeat-containing protein At3g15930-like [Cucumis sativus]

 Score =  264 bits (675), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 121/185 (65%), Positives = 152/185 (82%), Gaps = 8/185 (4%)

Query: 1   MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
           M N+D+ISWT IVS + N G++D+AR  FD+MPE+DYV WTAMIDGY+R NRF+EAL LF
Sbjct: 280 MNNRDIISWTTIVSGFTNLGEIDVARNYFDKMPEKDYVSWTAMIDGYIRSNRFKEALELF 339

Query: 61  QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
           + MQ +N+  DEFT+VS+LTA A+L AL+LGEWI+TYID+NK+KND+F  NALIDMY  C
Sbjct: 340 RNMQATNVKPDEFTMVSVLTACAHLGALELGEWIRTYIDRNKIKNDLFVRNALIDMYFKC 399

Query: 121 ADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVL 172
            DV+KA        Q+DKF+WT MIVGLA++G+G+KALDMFS ML+ASI PDE+ Y+GVL
Sbjct: 400 GDVDKAESIFREMSQRDKFTWTAMIVGLAVNGHGEKALDMFSNMLKASILPDEITYIGVL 459

Query: 173 SACTH 177
           SACTH
Sbjct: 460 SACTH 464

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224134923|ref|XP_002327523.1| predicted protein [Populus trichocarpa] gi|222836077|gb|EEE74498.1| predicted protein [Populus trichocarpa]

 Score =  262 bits (670), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 126/182 (69%), Positives = 150/182 (82%), Gaps = 8/182 (4%)

Query: 4   KDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEM 63
           KDVISWTAIV+ ++N GQVD AR+ F +MPERD+V WTAMIDGYLR+N ++EAL LF+EM
Sbjct: 195 KDVISWTAIVTGFVNTGQVDAARKYFHKMPERDHVSWTAMIDGYLRLNCYKEALMLFREM 254

Query: 64  QTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADV 123
           QTS I  DEFT+VS+LTA A L AL+LGEWI+TYIDKNKVKND F GNALIDMY  C +V
Sbjct: 255 QTSKIKPDEFTMVSVLTACAQLGALELGEWIRTYIDKNKVKNDTFVGNALIDMYFKCGNV 314

Query: 124 EKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC 175
           E A        Q+DKF+WT M+VGLAI+G G++AL+MFSQML+AS+ PDEV YVGVLSAC
Sbjct: 315 EMALSIFNTLPQRDKFTWTAMVVGLAINGCGEEALNMFSQMLKASVTPDEVTYVGVLSAC 374

Query: 176 TH 177
           TH
Sbjct: 375 TH 376

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357468161|ref|XP_003604365.1| Pentatricopeptide repeat-containing protein [Medicago truncatula] gi|355505420|gb|AES86562.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]

 Score =  259 bits (661), Expect = 4e-67,   Method: Compositional matrix adjust.
 Identities = 122/185 (65%), Positives = 150/185 (81%), Gaps = 8/185 (4%)

Query: 1   MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
           MK +DVISWT+IV+ + N  ++D+AR+ FDQMPERDYV WTAMIDGYLR+NRF+E LTLF
Sbjct: 301 MKTRDVISWTSIVTGFANTCRIDLARKYFDQMPERDYVSWTAMIDGYLRMNRFKEVLTLF 360

Query: 61  QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
           ++MQ SN+  DEFT+VSILTA A+L AL+LGEW KTYIDKNK+KND F GNALIDMY  C
Sbjct: 361 RDMQMSNVKPDEFTMVSILTACAHLGALELGEWAKTYIDKNKIKNDTFIGNALIDMYFKC 420

Query: 121 ADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVL 172
            +VEKA        +KDKF+WT MIVGLA +G+G++AL MFS ML AS+ PDE+ Y+GV+
Sbjct: 421 GNVEKAKKIFNEMQKKDKFTWTAMIVGLANNGHGEEALTMFSYMLEASVTPDEITYIGVM 480

Query: 173 SACTH 177
            ACTH
Sbjct: 481 CACTH 485

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225442904|ref|XP_002264123.1| PREDICTED: putative pentatricopeptide repeat-containing protein At3g15930 [Vitis vinifera]

 Score =  254 bits (649), Expect = 9e-66,   Method: Compositional matrix adjust.
 Identities = 123/186 (66%), Positives = 149/186 (80%), Gaps = 8/186 (4%)

Query: 1   MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
           MK++DVISWTAIV+ + N GQV +AR  FD+MPERD+V WTAMIDGYL+VNRF+E L+LF
Sbjct: 281 MKSRDVISWTAIVTGFTNLGQVGLARNYFDKMPERDFVSWTAMIDGYLQVNRFKEVLSLF 340

Query: 61  QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
           +EMQ +NI  DEFT+VSILTA A+L AL+LGEWIK YIDKN++K D F GNALIDMY  C
Sbjct: 341 REMQAANIKPDEFTMVSILTACAHLGALELGEWIKAYIDKNEIKIDSFVGNALIDMYFNC 400

Query: 121 ADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVL 172
            +VEKA         +DK SWT +I GLAI+G G++ALDMFSQML+ASI PDEV  +GVL
Sbjct: 401 GNVEKAIRIFNAMPHRDKISWTAVIFGLAINGYGEEALDMFSQMLKASITPDEVTCIGVL 460

Query: 173 SACTHN 178
            ACTH+
Sbjct: 461 CACTHS 466

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15233234|ref|NP_188214.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] gi|218546758|sp|Q9LSB8.2|PP235_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein At3g15930 gi|332642227|gb|AEE75748.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]

 Score =  226 bits (575), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 107/186 (57%), Positives = 139/186 (74%), Gaps = 8/186 (4%)

Query: 1   MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
           MK +DVISWT+IV  Y+ RG + +AR  FDQMP RD + WT MIDGYLR   F E+L +F
Sbjct: 297 MKARDVISWTSIVKGYVERGNLKLARTYFDQMPVRDRISWTIMIDGYLRAGCFNESLEIF 356

Query: 61  QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
           +EMQ++ ++ DEFT+VS+LTA A+L +L++GEWIKTYIDKNK+KND+  GNALIDMY  C
Sbjct: 357 REMQSAGMIPDEFTMVSVLTACAHLGSLEIGEWIKTYIDKNKIKNDVVVGNALIDMYFKC 416

Query: 121 ADVEKAQK--------DKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVL 172
              EKAQK        DKF+WT M+VGLA +G G +A+ +F QM   SI+PD++ Y+GVL
Sbjct: 417 GCSEKAQKVFHDMDQRDKFTWTAMVVGLANNGQGQEAIKVFFQMQDMSIQPDDITYLGVL 476

Query: 173 SACTHN 178
           SAC H+
Sbjct: 477 SACNHS 482

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|9294596|dbj|BAB02877.1| unnamed protein product [Arabidopsis thaliana]

 Score =  226 bits (575), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 107/186 (57%), Positives = 139/186 (74%), Gaps = 8/186 (4%)

Query: 1   MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
           MK +DVISWT+IV  Y+ RG + +AR  FDQMP RD + WT MIDGYLR   F E+L +F
Sbjct: 297 MKARDVISWTSIVKGYVERGNLKLARTYFDQMPVRDRISWTIMIDGYLRAGCFNESLEIF 356

Query: 61  QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
           +EMQ++ ++ DEFT+VS+LTA A+L +L++GEWIKTYIDKNK+KND+  GNALIDMY  C
Sbjct: 357 REMQSAGMIPDEFTMVSVLTACAHLGSLEIGEWIKTYIDKNKIKNDVVVGNALIDMYFKC 416

Query: 121 ADVEKAQK--------DKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVL 172
              EKAQK        DKF+WT M+VGLA +G G +A+ +F QM   SI+PD++ Y+GVL
Sbjct: 417 GCSEKAQKVFHDMDQRDKFTWTAMVVGLANNGQGQEAIKVFFQMQDMSIQPDDITYLGVL 476

Query: 173 SACTHN 178
           SAC H+
Sbjct: 477 SACNHS 482

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|242051881|ref|XP_002455086.1| hypothetical protein SORBIDRAFT_03g004125 [Sorghum bicolor] gi|241927061|gb|EES00206.1| hypothetical protein SORBIDRAFT_03g004125 [Sorghum bicolor]

 Score =  213 bits (542), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 97/185 (52%), Positives = 135/185 (72%), Gaps = 8/185 (4%)

Query: 1   MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
           M+ + V+SWT+++S     GQVD AR  FD+MPERD V WTAMIDGY+   RFREAL +F
Sbjct: 184 MQVRSVVSWTSLLSGLARLGQVDEARDLFDRMPERDTVSWTAMIDGYVWAARFREALEMF 243

Query: 61  QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
           +EMQ SN+  DEFT+VS++TA A L AL++GEW++ Y+ +  +K D F GNALIDMY  C
Sbjct: 244 REMQYSNVSADEFTMVSVITACAQLGALEMGEWVRVYMSRQGIKMDAFVGNALIDMYSKC 303

Query: 121 ADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVL 172
             +E+A         +DKF+WT +I+GLA++G  ++A++MF +M+R S  PDEV ++GVL
Sbjct: 304 GSIERALDVFKGMHHRDKFTWTAIILGLAVNGYEEEAIEMFHRMIRVSETPDEVTFIGVL 363

Query: 173 SACTH 177
           +ACTH
Sbjct: 364 TACTH 368

Source: Sorghum bicolor

Species: Sorghum bicolor

Genus: Sorghum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	178
TAIR|locus:2093920	687	AT3G15930 "AT3G15930" [Arabido	1.0	0.259	0.575	2.6e-54
TAIR|locus:2206164	570	AT1G31430 [Arabidopsis thalian	0.994	0.310	0.432	2.6e-38
TAIR|locus:2041198	681	SLO1 "SLOW GROWTH 1" [Arabidop	0.994	0.259	0.4	3.5e-36
TAIR|locus:2045580	559	AT2G42920 [Arabidopsis thalian	0.977	0.311	0.406	9.7e-36
TAIR|locus:2198678	500	PDE247 "pigment defective 247"	0.994	0.354	0.4	2.8e-34
TAIR|locus:2090857	455	AT3G26630 "AT3G26630" [Arabido	0.994	0.389	0.397	6.7e-33
TAIR|locus:2144143	622	AT5G06540 [Arabidopsis thalian	0.977	0.279	0.384	9.8e-33
TAIR|locus:2081635	573	AT3G62890 [Arabidopsis thalian	0.983	0.305	0.389	1.3e-32
TAIR|locus:2054966	555	AHG11 "ABA hypersensitive germ	0.988	0.317	0.397	1.8e-32
TAIR|locus:2117084	545	AT4G18840 "AT4G18840" [Arabido	0.994	0.324	0.387	4.4e-32

TAIR|locus:2093920 AT3G15930 "AT3G15930" [Arabidopsis thaliana (taxid:3702)]

 Score = 561 (202.5 bits), Expect = 2.6e-54, P = 2.6e-54
 Identities = 107/186 (57%), Positives = 139/186 (74%)

Query:     1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
             MK +DVISWT+IV  Y+ RG + +AR  FDQMP RD + WT MIDGYLR   F E+L +F
Sbjct:   297 MKARDVISWTSIVKGYVERGNLKLARTYFDQMPVRDRISWTIMIDGYLRAGCFNESLEIF 356

Query:    61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
             +EMQ++ ++ DEFT+VS+LTA A+L +L++GEWIKTYIDKNK+KND+  GNALIDMY  C
Sbjct:   357 REMQSAGMIPDEFTMVSVLTACAHLGSLEIGEWIKTYIDKNKIKNDVVVGNALIDMYFKC 416

Query:   121 ADVEKAQK--------DKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVL 172
                EKAQK        DKF+WT M+VGLA +G G +A+ +F QM   SI+PD++ Y+GVL
Sbjct:   417 GCSEKAQKVFHDMDQRDKFTWTAMVVGLANNGQGQEAIKVFFQMQDMSIQPDDITYLGVL 476

Query:   173 SACTHN 178
             SAC H+
Sbjct:   477 SACNHS 482

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2206164 AT1G31430 [Arabidopsis thaliana (taxid:3702)]

 Score = 410 (149.4 bits), Expect = 2.6e-38, P = 2.6e-38
 Identities = 80/185 (43%), Positives = 122/185 (65%)

Query:     1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
             M++K+V  WT++V  Y++ G++D AR  F++ P +D VLWTAM++GY++ NRF EAL LF
Sbjct:   208 MRDKNVKCWTSMVFGYVSTGRIDEARVLFERSPVKDVVLWTAMMNGYVQFNRFDEALELF 267

Query:    61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
             + MQT+ I  D F +VS+LT  A   AL+ G+WI  YI++N+V  D   G AL+DMY  C
Sbjct:   268 RCMQTAGIRPDNFVLVSLLTGCAQTGALEQGKWIHGYINENRVTVDKVVGTALVDMYAKC 327

Query:   121 ADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVL 172
               +E A        ++D  SWT++I GLA++G   +ALD++ +M    ++ D + +V VL
Sbjct:   328 GCIETALEVFYEIKERDTASWTSLIYGLAMNGMSGRALDLYYEMENVGVRLDAITFVAVL 387

Query:   173 SACTH 177
             +AC H
Sbjct:   388 TACNH 392

GO:0005739 "mitochondrion" evidence=ISM

TAIR|locus:2041198 SLO1 "SLOW GROWTH 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 396 (144.5 bits), Expect = 3.5e-36, P = 3.5e-36
 Identities = 74/185 (40%), Positives = 119/185 (64%)

Query:     1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
             ++ + ++SWT ++S Y   G +D++R+ FD M E+D VLW AMI G ++  R ++AL LF
Sbjct:   318 LEKRTIVSWTTMISGYARCGLLDVSRKLFDDMEEKDVVLWNAMIGGSVQAKRGQDALALF 377

Query:    61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
             QEMQTSN   DE T++  L+A + L ALD+G WI  YI+K  +  ++  G +L+DMY  C
Sbjct:   378 QEMQTSNTKPDEITMIHCLSACSQLGALDVGIWIHRYIEKYSLSLNVALGTSLVDMYAKC 437

Query:   121 ADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVL 172
              ++ +A         ++  ++T +I GLA+ G+   A+  F++M+ A I PDE+ ++G+L
Sbjct:   438 GNISEALSVFHGIQTRNSLTYTAIIGGLALHGDASTAISYFNEMIDAGIAPDEITFIGLL 497

Query:   173 SACTH 177
             SAC H
Sbjct:   498 SACCH 502

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2045580 AT2G42920 [Arabidopsis thaliana (taxid:3702)]

 Score = 386 (140.9 bits), Expect = 9.7e-36, P = 9.7e-36
 Identities = 74/182 (40%), Positives = 121/182 (66%)

Query:     5 DVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQ 64
             DV++W +++  +   G +D A+  FD+MP+R+ V W +MI G++R  RF++AL +F+EMQ
Sbjct:   191 DVVAWNSMIMGFAKCGLIDQAQNLFDEMPQRNGVSWNSMISGFVRNGRFKDALDMFREMQ 250

Query:    65 TSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVE 124
               ++  D FT+VS+L A A L A + G WI  YI +N+ + +     ALIDMYC C  +E
Sbjct:   251 EKDVKPDGFTMVSLLNACAYLGASEQGRWIHEYIVRNRFELNSIVVTALIDMYCKCGCIE 310

Query:   125 K-------AQKDKFS-WTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACT 176
             +       A K + S W +MI+GLA +G  ++A+D+FS++ R+ ++PD V+++GVL+AC 
Sbjct:   311 EGLNVFECAPKKQLSCWNSMILGLANNGFEERAMDLFSELERSGLEPDSVSFIGVLTACA 370

Query:   177 HN 178
             H+
Sbjct:   371 HS 372

GO:0009507 "chloroplast" evidence=ISM

TAIR|locus:2198678 PDE247 "pigment defective 247" [Arabidopsis thaliana (taxid:3702)]

 Score = 372 (136.0 bits), Expect = 2.8e-34, P = 2.8e-34
 Identities = 74/185 (40%), Positives = 111/185 (60%)

Query:     1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
             M++K+ ++W  ++  Y+  GQVD A + FD+MPERD + WTAMI+G+++     EAL  F
Sbjct:   135 MEDKNSVTWNTMIDGYMRSGQVDNAAKMFDKMPERDLISWTAMINGFVKKGYQEEALLWF 194

Query:    61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
             +EMQ S +  D   I++ L A  NL AL  G W+  Y+     KN++   N+LID+YC C
Sbjct:   195 REMQISGVKPDYVAIIAALNACTNLGALSFGLWVHRYVLSQDFKNNVRVSNSLIDLYCRC 254

Query:   121 ADVEKAQK-----DK---FSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVL 172
               VE A++     +K    SW ++IVG A +GN  ++L  F +M     KPD V + G L
Sbjct:   255 GCVEFARQVFYNMEKRTVVSWNSVIVGFAANGNAHESLVYFRKMQEKGFKPDAVTFTGAL 314

Query:   173 SACTH 177
             +AC+H
Sbjct:   315 TACSH 319

GO:0005739 "mitochondrion" evidence=ISM

GO:0009451 "RNA modification" evidence=IMP

GO:0009507 "chloroplast" evidence=IDA

TAIR|locus:2090857 AT3G26630 "AT3G26630" [Arabidopsis thaliana (taxid:3702)]

 Score = 359 (131.4 bits), Expect = 6.7e-33, P = 6.7e-33
 Identities = 74/186 (39%), Positives = 110/186 (59%)

Query:     1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
             M  + ++SWT ++   ++  Q+D A   F+QMP R+ V WTAMI  Y++  R  EA  LF
Sbjct:   180 MPGRSIVSWTTMLYGLVSNSQLDSAEIVFNQMPMRNVVSWTAMITAYVKNRRPDEAFQLF 239

Query:    61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
             + MQ  ++  +EFTIV++L A   L +L +G W+  Y  KN    D F G ALIDMY  C
Sbjct:   240 RRMQVDDVKPNEFTIVNLLQASTQLGSLSMGRWVHDYAHKNGFVLDCFLGTALIDMYSKC 299

Query:   121 ADVEKAQK--DKF------SWTTMIVGLAISGNGDKALDMFSQMLR-ASIKPDEVAYVGV 171
               ++ A+K  D        +W +MI  L + G G++AL +F +M   AS++PD + +VGV
Sbjct:   300 GSLQDARKVFDVMQGKSLATWNSMITSLGVHGCGEEALSLFEEMEEEASVEPDAITFVGV 359

Query:   172 LSACTH 177
             LSAC +
Sbjct:   360 LSACAN 365

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2144143 AT5G06540 [Arabidopsis thaliana (taxid:3702)]

 Score = 363 (132.8 bits), Expect = 9.8e-33, P = 9.8e-33
 Identities = 70/182 (38%), Positives = 115/182 (63%)

Query:     4 KDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEM 63
             +DV+SWT++V+ Y   G V+ AR+ FD+MP R+   W+ MI+GY + N F +A+ LF+ M
Sbjct:   181 RDVVSWTSMVAGYCKCGMVENAREMFDEMPHRNLFTWSIMINGYAKNNCFEKAIDLFEFM 240

Query:    64 QTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADV 123
             +   ++ +E  +VS++++ A+L AL+ GE    Y+ K+ +  ++  G AL+DM+  C D+
Sbjct:   241 KREGVVANETVMVSVISSCAHLGALEFGERAYEYVVKSHMTVNLILGTALVDMFWRCGDI 300

Query:   124 EKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC 175
             EKA        + D  SW+++I GLA+ G+  KA+  FSQM+     P +V +  VLSAC
Sbjct:   301 EKAIHVFEGLPETDSLSWSSIIKGLAVHGHAHKAMHYFSQMISLGFIPRDVTFTAVLSAC 360

Query:   176 TH 177
             +H
Sbjct:   361 SH 362

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2081635 AT3G62890 [Arabidopsis thaliana (taxid:3702)]

 Score = 360 (131.8 bits), Expect = 1.3e-32, P = 1.3e-32
 Identities = 74/190 (38%), Positives = 118/190 (62%)

Query:     3 NKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQE 62
             +KD+ +W ++V+ Y   G +D AR+ FD+MPER+ + W+ +I+GY+   +++EAL LF+E
Sbjct:   125 SKDLPAWNSVVNAYAKAGLIDDARKLFDEMPERNVISWSCLINGYVMCGKYKEALDLFRE 184

Query:    63 MQTSN-----IMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMY 117
             MQ        +  +EFT+ ++L+A   L AL+ G+W+  YIDK  V+ DI  G ALIDMY
Sbjct:   185 MQLPKPNEAFVRPNEFTMSTVLSACGRLGALEQGKWVHAYIDKYHVEIDIVLGTALIDMY 244

Query:   118 CICADVEKAQ---------KDKFSWTTMIVGLAISGNGDKALDMFSQMLRA-SIKPDEVA 167
               C  +E+A+         KD  +++ MI  LA+ G  D+   +FS+M  + +I P+ V 
Sbjct:   245 AKCGSLERAKRVFNALGSKKDVKAYSAMICCLAMYGLTDECFQLFSEMTTSDNINPNSVT 304

Query:   168 YVGVLSACTH 177
             +VG+L AC H
Sbjct:   305 FVGILGACVH 314

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2054966 AHG11 "ABA hypersensitive germination 11" [Arabidopsis thaliana (taxid:3702)]

 Score = 358 (131.1 bits), Expect = 1.8e-32, P = 1.8e-32
 Identities = 74/186 (39%), Positives = 113/186 (60%)

Query:     1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
             M +K VI+WT ++  Y N   +D AR+ FD MPER+ V W  MI GY +  + +E + LF
Sbjct:   202 MTHKTVITWTTMIHGYCNIKDIDAARKLFDAMPERNLVSWNTMIGGYCQNKQPQEGIRLF 261

Query:    61 QEMQ-TSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCI 119
             QEMQ T+++  D+ TI+S+L A ++  AL LGEW   ++ + K+   +    A++DMY  
Sbjct:   262 QEMQATTSLDPDDVTILSVLPAISDTGALSLGEWCHCFVQRKKLDKKVKVCTAILDMYSK 321

Query:   120 CADVEKAQK--DKF------SWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGV 171
             C ++EKA++  D+       SW  MI G A++GN   ALD+F  M+    KPDE+  + V
Sbjct:   322 CGEIEKAKRIFDEMPEKQVASWNAMIHGYALNGNARAALDLFVTMMIEE-KPDEITMLAV 380

Query:   172 LSACTH 177
             ++AC H
Sbjct:   381 ITACNH 386

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2117084 AT4G18840 "AT4G18840" [Arabidopsis thaliana (taxid:3702)]

 Score = 354 (129.7 bits), Expect = 4.4e-32, P = 4.4e-32
 Identities = 72/186 (38%), Positives = 111/186 (59%)

Query:     1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
             M+ ++V SW  ++S Y   G V  A++ FD MP RD V W AM+  Y  V  + E L +F
Sbjct:   232 MEERNVESWNFMISGYAAAGLVKEAKEVFDSMPVRDVVSWNAMVTAYAHVGCYNEVLEVF 291

Query:    61 QEM-QTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCI 119
              +M   S    D FT+VS+L+A A+L +L  GEW+  YIDK+ ++ + F   AL+DMY  
Sbjct:   292 NKMLDDSTEKPDGFTLVSVLSACASLGSLSQGEWVHVYIDKHGIEIEGFLATALVDMYSK 351

Query:   120 CADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGV 171
             C  ++KA        ++D  +W ++I  L++ G G  AL++FS+M+    KP+ + ++GV
Sbjct:   352 CGKIDKALEVFRATSKRDVSTWNSIISDLSVHGLGKDALEIFSEMVYEGFKPNGITFIGV 411

Query:   172 LSACTH 177
             LSAC H
Sbjct:   412 LSACNH 417

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	178
PLN03081	697	PLN03081, PLN03081, pentatricopeptide (PPR) repeat	3e-29
PLN03077	857	PLN03077, PLN03077, Protein ECB2; Provisional	1e-28
PLN03077	857	PLN03077, PLN03077, Protein ECB2; Provisional	2e-28
PLN03077	857	PLN03077, PLN03077, Protein ECB2; Provisional	1e-27
PLN03081	697	PLN03081, PLN03081, pentatricopeptide (PPR) repeat	1e-22
PLN03077	857	PLN03077, PLN03077, Protein ECB2; Provisional	3e-21
PLN03077	857	PLN03077, PLN03077, Protein ECB2; Provisional	5e-12
PLN03081	697	PLN03081, PLN03081, pentatricopeptide (PPR) repeat	2e-10
pfam13041	50	pfam13041, PPR_2, PPR repeat family	3e-07
pfam13041	50	pfam13041, PPR_2, PPR repeat family	1e-06
pfam01535	31	pfam01535, PPR, PPR repeat	1e-05
PLN03081	697	PLN03081, PLN03081, pentatricopeptide (PPR) repeat	2e-05
TIGR00756	35	TIGR00756, PPR, pentatricopeptide repeat domain (P	3e-05
PLN03218	1060	PLN03218, PLN03218, maturation of RBCL 1; Provisio	3e-05
pfam13041	50	pfam13041, PPR_2, PPR repeat family	5e-05
PLN03077	857	PLN03077, PLN03077, Protein ECB2; Provisional	7e-05
TIGR00756	35	TIGR00756, PPR, pentatricopeptide repeat domain (P	1e-04
pfam01535	31	pfam01535, PPR, PPR repeat	7e-04

>gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional

 Score =  112 bits (281), Expect = 3e-29
 Identities = 55/173 (31%), Positives = 87/173 (50%), Gaps = 8/173 (4%)

Query: 11  AIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMG 70
           A++  Y   G ++ AR  FD MPE+  V W +M+ GY       EAL L+ EM+ S +  
Sbjct: 264 ALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSI 323

Query: 71  DEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ--- 127
           D+FT   ++   + L  L+  +     + +     DI A  AL+D+Y     +E A+   
Sbjct: 324 DQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVF 383

Query: 128 -----KDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC 175
                K+  SW  +I G    G G KA++MF +M+   + P+ V ++ VLSAC
Sbjct: 384 DRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSAC 436

Length = 697

>gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional

 Score =  111 bits (278), Expect = 1e-28
 Identities = 54/178 (30%), Positives = 97/178 (54%), Gaps = 8/178 (4%)

Query: 6   VISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQT 65
           V+   A++  Y     +D A + F  +PE+D + WT++I G    NR  EAL  F++M  
Sbjct: 424 VVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLL 483

Query: 66  SNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEK 125
           + +  +  T+++ L+A A + AL  G+ I  ++ +  +  D F  NAL+D+Y  C  +  
Sbjct: 484 T-LKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNY 542

Query: 126 A-------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACT 176
           A       +KD  SW  ++ G    G G  A+++F++M+ + + PDEV ++ +L AC+
Sbjct: 543 AWNQFNSHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACS 600

Length = 857

>gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional

 Score =  109 bits (275), Expect = 2e-28
 Identities = 63/180 (35%), Positives = 98/180 (54%), Gaps = 11/180 (6%)

Query: 5   DVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFRE-ALTLFQEM 63
           DV    +++  Y++ G    A + F +M  +D V WTAMI GY + N   + AL  +  M
Sbjct: 322 DVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEK-NGLPDKALETYALM 380

Query: 64  QTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADV 123
           +  N+  DE TI S+L+A A L  LD+G  +    ++  + + +   NALI+MY  C  +
Sbjct: 381 EQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCI 440

Query: 124 EKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC 175
           +KA        +KD  SWT++I GL ++    +AL  F QML  ++KP+ V  +  LSAC
Sbjct: 441 DKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQML-LTLKPNSVTLIAALSAC 499

Length = 857

>gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional

 Score =  108 bits (270), Expect = 1e-27
 Identities = 64/179 (35%), Positives = 92/179 (51%), Gaps = 10/179 (5%)

Query: 5   DVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQ 64
           DV++  A+++ Y+  G V  AR  FD+MP RD + W AMI GY       E L LF  M+
Sbjct: 223 DVVN--ALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMR 280

Query: 65  TSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVE 124
             ++  D  TI S+++A   L    LG  +  Y+ K     D+   N+LI MY       
Sbjct: 281 ELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWG 340

Query: 125 KAQ--------KDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC 175
           +A+        KD  SWT MI G   +G  DKAL+ ++ M + ++ PDE+    VLSAC
Sbjct: 341 EAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSAC 399

Length = 857

>gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional

 Score = 93.8 bits (233), Expect = 1e-22
 Identities = 50/176 (28%), Positives = 86/176 (48%), Gaps = 8/176 (4%)

Query: 9   WTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNI 68
              ++  ++  G +  AR+ FD+MPER+   W  +I G +    +REA  LF+EM     
Sbjct: 161 MNRVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGS 220

Query: 69  MGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKA-- 126
             +  T V +L A A L +   G+ +   + K  V  D F   ALIDMY  C D+E A  
Sbjct: 221 DAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARC 280

Query: 127 ------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACT 176
                 +K   +W +M+ G A+ G  ++AL ++ +M  + +  D+  +  ++   +
Sbjct: 281 VFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFS 336

Length = 697

>gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional

 Score = 89.5 bits (222), Expect = 3e-21
 Identities = 52/173 (30%), Positives = 82/173 (47%), Gaps = 8/173 (4%)

Query: 11  AIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMG 70
           A++S ++  G++  A   F +MPERD   W  ++ GY +   F EAL L+  M  + +  
Sbjct: 126 AMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRP 185

Query: 71  DEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQK-- 128
           D +T   +L     +  L  G  +  ++ +   + D+   NALI MY  C DV  A+   
Sbjct: 186 DVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVF 245

Query: 129 ------DKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC 175
                 D  SW  MI G   +G   + L++F  M   S+ PD +    V+SAC
Sbjct: 246 DRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISAC 298

Length = 857

>gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional

 Score = 62.9 bits (153), Expect = 5e-12
 Identities = 34/129 (26%), Positives = 62/129 (48%), Gaps = 8/129 (6%)

Query: 55  EALTLFQEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALI 114
           +AL L + MQ   +  DE   V++       RA++ G  + +    +     +  GNA++
Sbjct: 69  QALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAML 128

Query: 115 DMYCICADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEV 166
            M+    ++  A        ++D FSW  ++ G A +G  D+AL ++ +ML A ++PD  
Sbjct: 129 SMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVY 188

Query: 167 AYVGVLSAC 175
            +  VL  C
Sbjct: 189 TFPCVLRTC 197

Length = 857

>gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional

 Score = 58.3 bits (141), Expect = 2e-10
 Identities = 24/77 (31%), Positives = 46/77 (59%)

Query: 5   DVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQ 64
           D+++ TA+V  Y   G+++ AR  FD+MP ++ + W A+I GY    R  +A+ +F+ M 
Sbjct: 359 DIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMI 418

Query: 65  TSNIMGDEFTIVSILTA 81
              +  +  T +++L+A
Sbjct: 419 AEGVAPNHVTFLAVLSA 435

Length = 697

>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family

 Score = 45.1 bits (108), Expect = 3e-07
 Identities = 13/48 (27%), Positives = 25/48 (52%)

Query: 128 KDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC 175
            D  ++ T+I G    G  ++AL +F++M +  IKP+   Y  ++   
Sbjct: 1   PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48

This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50

>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family

 Score = 43.2 bits (103), Expect = 1e-06
 Identities = 15/46 (32%), Positives = 24/46 (52%)

Query: 36 DYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTA 81
          D V +  +IDGY +  +  EAL LF EM+   I  + +T   ++  
Sbjct: 2  DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDG 47

This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50

>gnl|CDD|144943 pfam01535, PPR, PPR repeat

 Score = 40.1 bits (95), Expect = 1e-05
 Identities = 11/31 (35%), Positives = 19/31 (61%)

Query: 38 VLWTAMIDGYLRVNRFREALTLFQEMQTSNI 68
          V + ++I GY +  +  EAL LF+EM+   +
Sbjct: 1  VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31

This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31

>gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional

 Score = 43.3 bits (102), Expect = 2e-05
 Identities = 31/145 (21%), Positives = 65/145 (44%), Gaps = 11/145 (7%)

Query: 42  AMIDGYLRVNRFREALTLFQ--EMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYID 99
           + I+  +   R REAL LF+  E      +    T  +++ A   L+++   + +  +++
Sbjct: 92  SQIEKLVACGRHREALELFEILEAGCPFTLPAS-TYDALVEACIALKSIRCVKAVYWHVE 150

Query: 100 KNKVKNDIFAGNALIDMYCIC---ADVEKA-----QKDKFSWTTMIVGLAISGNGDKALD 151
            +  + D +  N ++ M+  C    D  +      +++  SW T+I GL  +GN  +A  
Sbjct: 151 SSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFA 210

Query: 152 MFSQMLRASIKPDEVAYVGVLSACT 176
           +F +M       +   +V +L A  
Sbjct: 211 LFREMWEDGSDAEPRTFVVMLRASA 235

Length = 697

>gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif)

 Score = 39.0 bits (92), Expect = 3e-05
 Identities = 12/35 (34%), Positives = 22/35 (62%)

Query: 131 FSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDE 165
            ++ T+I GL  +G  ++AL++F +M    I+PD 
Sbjct: 1   VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35

This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35

>gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional

 Score = 42.9 bits (101), Expect = 3e-05
 Identities = 42/187 (22%), Positives = 78/187 (41%), Gaps = 24/187 (12%)

Query: 9   WTAIVSRYINRGQVDIARQCFDQMPER----DYVLWTAMIDGYLRVNRFREALTLFQEMQ 64
           +T  V+    +G  D A   +D M ++    D V ++A++D         +A  + Q+ +
Sbjct: 617 YTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDAR 676

Query: 65  TSNIMGDEFTIVSILTARANL----RALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
              I     +  S++ A +N     +AL+L E IK+     K++  +   NALI   C  
Sbjct: 677 KQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKS----IKLRPTVSTMNALITALCEG 732

Query: 121 ADVEKAQK------------DKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAY 168
             + KA +            +  +++ ++V      + D  LD+ SQ     IKP+ V  
Sbjct: 733 NQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMC 792

Query: 169 VGVLSAC 175
             +   C
Sbjct: 793 RCITGLC 799

Length = 1060

>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family

 Score = 38.9 bits (92), Expect = 5e-05
 Identities = 12/48 (25%), Positives = 28/48 (58%), Gaps = 4/48 (8%)

Query: 4  KDVISWTAIVSRYINRGQVDIARQCFDQMPER----DYVLWTAMIDGY 47
           DV+++  ++  Y  +G+V+ A + F++M +R    +   ++ +IDG 
Sbjct: 1  PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48

This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50

>gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional

 Score = 42.1 bits (99), Expect = 7e-05
 Identities = 29/121 (23%), Positives = 55/121 (45%), Gaps = 16/121 (13%)

Query: 4   KDVISWTAIVSRYINRGQVDIARQCFDQMPER----DYVLWTAMIDGYLRVNRFREALTL 59
           KDV+SW  +++ Y+  G+  +A + F++M E     D V + +++    R     + L  
Sbjct: 552 KDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEY 611

Query: 60  FQEMQTSNIMGDEFTIVSILTARANL-----RALDLGEWIKTYIDKNKVKNDIFAGNALI 114
           F  M+      ++++I   L   A +     RA  L E    +I+K  +  D     AL+
Sbjct: 612 FHSME------EKYSITPNLKHYACVVDLLGRAGKLTEAYN-FINKMPITPDPAVWGALL 664

Query: 115 D 115
           +
Sbjct: 665 N 665

Length = 857

>gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif)

 Score = 37.8 bits (89), Expect = 1e-04
 Identities = 13/31 (41%), Positives = 18/31 (58%)

Query: 38 VLWTAMIDGYLRVNRFREALTLFQEMQTSNI 68
          V +  +IDG  +  R  EAL LF+EM+   I
Sbjct: 1  VTYNTLIDGLCKAGRVEEALELFKEMKERGI 31

This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35

>gnl|CDD|144943 pfam01535, PPR, PPR repeat

 Score = 35.5 bits (83), Expect = 7e-04
 Identities = 7/31 (22%), Positives = 18/31 (58%)

Query: 131 FSWTTMIVGLAISGNGDKALDMFSQMLRASI 161
            ++ ++I G   +G  ++AL++F +M    +
Sbjct: 1   VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31

This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	178
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	100.0
PLN03218	1060	maturation of RBCL 1; Provisional	100.0
PLN03218	1060	maturation of RBCL 1; Provisional	100.0
PLN03077	857	Protein ECB2; Provisional	100.0
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	100.0
PLN03077	857	Protein ECB2; Provisional	100.0
PF13041	50	PPR_2: PPR repeat family	99.73
PF13041	50	PPR_2: PPR repeat family	99.69
PRK11788	389	tetratricopeptide repeat protein; Provisional	99.61
KOG4422	625	consensus Uncharacterized conserved protein [Funct	99.58
PRK11788	389	tetratricopeptide repeat protein; Provisional	99.53
KOG4422	625	consensus Uncharacterized conserved protein [Funct	99.42
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	99.39
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	99.37
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	99.25
PF12854	34	PPR_1: PPR repeat	99.1
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	99.1
PF12854	34	PPR_1: PPR repeat	99.08
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	99.07
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	99.01
TIGR00756	35	PPR pentatricopeptide repeat domain (PPR motif). T	99.0
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	98.99
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	98.98
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	98.96
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	98.94
PF13812	34	PPR_3: Pentatricopeptide repeat domain	98.93
PRK12370	553	invasion protein regulator; Provisional	98.89
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	98.88
KOG4318	1088	consensus Bicoid mRNA stability factor [RNA proces	98.86
TIGR00756	35	PPR pentatricopeptide repeat domain (PPR motif). T	98.84
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	98.81
PRK12370	553	invasion protein regulator; Provisional	98.81
PF13812	34	PPR_3: Pentatricopeptide repeat domain	98.8
KOG1126	638	consensus DNA-binding cell division cycle control	98.78
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	98.77
PF08579	120	RPM2: Mitochondrial ribonuclease P subunit (RPM2);	98.76
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	98.76
KOG2003	840	consensus TPR repeat-containing protein [General f	98.73
PF01535	31	PPR: PPR repeat; InterPro: IPR002885 This entry re	98.73
PF08579	120	RPM2: Mitochondrial ribonuclease P subunit (RPM2);	98.73
PRK11189	296	lipoprotein NlpI; Provisional	98.7
KOG4318	1088	consensus Bicoid mRNA stability factor [RNA proces	98.68
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	98.63
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	98.63
PRK14574	822	hmsH outer membrane protein; Provisional	98.6
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	98.58
PF01535	31	PPR: PPR repeat; InterPro: IPR002885 This entry re	98.58
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	98.57
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	98.56
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	98.54
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	98.52
PF10037	429	MRP-S27: Mitochondrial 28S ribosomal protein S27;	98.52
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	98.52
PF06239	228	ECSIT: Evolutionarily conserved signalling interme	98.51
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	98.47
KOG1129	478	consensus TPR repeat-containing protein [General f	98.47
PF10037	429	MRP-S27: Mitochondrial 28S ribosomal protein S27;	98.47
PF06239	228	ECSIT: Evolutionarily conserved signalling interme	98.46
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	98.46
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	98.46
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	98.44
COG4783	484	Putative Zn-dependent protease, contains TPR repea	98.43
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	98.39
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	98.38
PRK15359	144	type III secretion system chaperone protein SscB;	98.36
KOG1126	638	consensus DNA-binding cell division cycle control	98.34
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	98.32
PRK10370	198	formate-dependent nitrite reductase complex subuni	98.32
KOG1070	1710	consensus rRNA processing protein Rrp5 [RNA proces	98.29
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	98.29
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	98.29
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	98.27
PRK15359	144	type III secretion system chaperone protein SscB;	98.27
TIGR02552	135	LcrH_SycD type III secretion low calcium response	98.22
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	98.17
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	98.16
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	98.15
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	98.11
PRK14574	822	hmsH outer membrane protein; Provisional	98.1
TIGR02552	135	LcrH_SycD type III secretion low calcium response	98.09
PRK10370	198	formate-dependent nitrite reductase complex subuni	98.09
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	98.09
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	98.06
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	98.03
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	98.03
PRK11189	296	lipoprotein NlpI; Provisional	98.02
KOG0547	606	consensus Translocase of outer mitochondrial membr	98.0
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	98.0
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	97.99
KOG1129	478	consensus TPR repeat-containing protein [General f	97.94
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	97.9
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	97.9
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	97.9
KOG2076	895	consensus RNA polymerase III transcription factor	97.88
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	97.88
PF04840	319	Vps16_C: Vps16, C-terminal region; InterPro: IPR00	97.86
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	97.83
COG4783	484	Putative Zn-dependent protease, contains TPR repea	97.79
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	97.76
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	97.76
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	97.73
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	97.71
PLN02789	320	farnesyltranstransferase	97.71
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	97.71
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	97.69
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	97.65
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	97.63
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	97.6
KOG2076	895	consensus RNA polymerase III transcription factor	97.59
PF12921	126	ATP13: Mitochondrial ATPase expression; InterPro:	97.57
KOG1128	777	consensus Uncharacterized conserved protein, conta	97.55
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	97.55
KOG3941	406	consensus Intermediate in Toll signal transduction	97.55
KOG3081	299	consensus Vesicle coat complex COPI, epsilon subun	97.53
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	97.52
PRK14720	906	transcript cleavage factor/unknown domain fusion p	97.52
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	97.52
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	97.51
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	97.46
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	97.44
PF03704	146	BTAD: Bacterial transcriptional activator domain;	97.43
PF12921	126	ATP13: Mitochondrial ATPase expression; InterPro:	97.4
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	97.4
KOG1070	1710	consensus rRNA processing protein Rrp5 [RNA proces	97.4
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	97.39
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	97.38
KOG1128	777	consensus Uncharacterized conserved protein, conta	97.36
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	97.35
KOG3081	299	consensus Vesicle coat complex COPI, epsilon subun	97.33
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	97.31
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	97.31
KOG2047	835	consensus mRNA splicing factor [RNA processing and	97.31
PF03704	146	BTAD: Bacterial transcriptional activator domain;	97.26
KOG1915	677	consensus Cell cycle control protein (crooked neck	97.24
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	97.21
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	97.2
KOG3941	406	consensus Intermediate in Toll signal transduction	97.19
PRK10803	263	tol-pal system protein YbgF; Provisional	97.16
KOG0985	1666	consensus Vesicle coat protein clathrin, heavy cha	97.15
PF12688	120	TPR_5: Tetratrico peptide repeat	97.14
KOG1915	677	consensus Cell cycle control protein (crooked neck	97.14
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	97.11
KOG0495	913	consensus HAT repeat protein [RNA processing and m	97.11
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	97.11
KOG0553	304	consensus TPR repeat-containing protein [General f	97.08
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	97.05
KOG3616	1636	consensus Selective LIM binding factor [Transcript	97.04
KOG2796	366	consensus Uncharacterized conserved protein [Funct	96.99
PF13371	73	TPR_9: Tetratricopeptide repeat	96.98
KOG2376	652	consensus Signal recognition particle, subunit Srp	96.97
KOG3616	1636	consensus Selective LIM binding factor [Transcript	96.96
KOG0985	1666	consensus Vesicle coat protein clathrin, heavy cha	96.93
PLN02789	320	farnesyltranstransferase	96.92
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	96.91
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	96.89
KOG4340	459	consensus Uncharacterized conserved protein [Funct	96.82
KOG3060	289	consensus Uncharacterized conserved protein [Funct	96.82
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	96.8
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	96.76
PRK10803	263	tol-pal system protein YbgF; Provisional	96.75
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	96.72
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	96.67
PF13512	142	TPR_18: Tetratricopeptide repeat	96.56
KOG0547	606	consensus Translocase of outer mitochondrial membr	96.53
PRK14720	906	transcript cleavage factor/unknown domain fusion p	96.53
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	96.49
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	96.48
KOG1914	656	consensus mRNA cleavage and polyadenylation factor	96.47
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	96.44
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	96.44
KOG2053	932	consensus Mitochondrial inheritance and actin cyto	96.44
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	96.41
KOG0495	913	consensus HAT repeat protein [RNA processing and m	96.41
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	96.41
KOG4570	418	consensus Uncharacterized conserved protein [Funct	96.4
KOG1125	579	consensus TPR repeat-containing protein [General f	96.39
KOG2053	932	consensus Mitochondrial inheritance and actin cyto	96.38
KOG2003	840	consensus TPR repeat-containing protein [General f	96.37
KOG3060	289	consensus Uncharacterized conserved protein [Funct	96.34
KOG3785	557	consensus Uncharacterized conserved protein [Funct	96.33
PF13371	73	TPR_9: Tetratricopeptide repeat	96.26
PF04840	319	Vps16_C: Vps16, C-terminal region; InterPro: IPR00	96.16
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	96.09
PRK04841	903	transcriptional regulator MalT; Provisional	96.06
cd00923	103	Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va.	95.91
KOG1125	579	consensus TPR repeat-containing protein [General f	95.9
PF13170	297	DUF4003: Protein of unknown function (DUF4003)	95.9
COG3629	280	DnrI DNA-binding transcriptional activator of the	95.83
PF00637	143	Clathrin: Region in Clathrin and VPS; InterPro: IP	95.81
PRK15331	165	chaperone protein SicA; Provisional	95.8
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	95.72
PF07079	549	DUF1347: Protein of unknown function (DUF1347); In	95.71
KOG0553	304	consensus TPR repeat-containing protein [General f	95.66
KOG1914	656	consensus mRNA cleavage and polyadenylation factor	95.65
PF09205	161	DUF1955: Domain of unknown function (DUF1955); Int	95.65
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	95.62
PRK04841	903	transcriptional regulator MalT; Provisional	95.58
COG4700	251	Uncharacterized protein conserved in bacteria cont	95.56
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	95.55
PF02284	108	COX5A: Cytochrome c oxidase subunit Va; InterPro:	95.53
PF00637	143	Clathrin: Region in Clathrin and VPS; InterPro: IP	95.53
COG4700	251	Uncharacterized protein conserved in bacteria cont	95.49
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	95.48
COG3629	280	DnrI DNA-binding transcriptional activator of the	95.44
KOG2047	835	consensus mRNA splicing factor [RNA processing and	95.39
PF13512	142	TPR_18: Tetratricopeptide repeat	95.36
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	95.29
KOG4340	459	consensus Uncharacterized conserved protein [Funct	95.05
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	95.02
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	94.87
KOG2610	491	consensus Uncharacterized conserved protein [Funct	94.69
PF13428	44	TPR_14: Tetratricopeptide repeat	94.69
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	94.68
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	94.65
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	94.56
smart00299	140	CLH Clathrin heavy chain repeat homology.	94.52
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	94.51
PF13762	145	MNE1: Mitochondrial splicing apparatus component	94.49
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	94.45
KOG2376	652	consensus Signal recognition particle, subunit Srp	94.44
PF13428	44	TPR_14: Tetratricopeptide repeat	94.4
smart00299	140	CLH Clathrin heavy chain repeat homology.	94.38
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	94.09
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	94.04
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	94.02
COG5107	660	RNA14 Pre-mRNA 3'-end processing (cleavage and pol	94.02
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	94.01
PRK15331	165	chaperone protein SicA; Provisional	93.88
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	93.79
KOG3785	557	consensus Uncharacterized conserved protein [Funct	93.77
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	93.73
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	93.73
COG5107	660	RNA14 Pre-mRNA 3'-end processing (cleavage and pol	93.65
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	93.54
PF11207	203	DUF2989: Protein of unknown function (DUF2989); In	93.47
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	93.46
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	93.39
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	93.38
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	93.33
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	93.03
PF07035	167	Mic1: Colon cancer-associated protein Mic1-like; I	92.84
PF13929	292	mRNA_stabil: mRNA stabilisation	92.78
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	92.68
PF12688	120	TPR_5: Tetratrico peptide repeat	92.61
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	92.5
PF13762	145	MNE1: Mitochondrial splicing apparatus component	92.5
PF13929	292	mRNA_stabil: mRNA stabilisation	92.34
KOG2796	366	consensus Uncharacterized conserved protein [Funct	92.32
PF11848	48	DUF3368: Domain of unknown function (DUF3368); Int	92.18
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	91.91
COG0735	145	Fur Fe2+/Zn2+ uptake regulation proteins [Inorgani	91.88
PF09613	160	HrpB1_HrpK: Bacterial type III secretion protein (	91.83
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	91.79
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	91.73
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	91.52
KOG4077	149	consensus Cytochrome c oxidase, subunit Va/COX6 [E	91.28
TIGR03504	44	FimV_Cterm FimV C-terminal domain. This protein is	90.9
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	90.86
cd00280	200	TRFH Telomeric Repeat binding Factor or TTAGGG Rep	90.76
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	90.74
COG3118	304	Thioredoxin domain-containing protein [Posttransla	90.59
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	90.56
TIGR02561	153	HrpB1_HrpK type III secretion protein HrpB1/HrpK.	90.51
COG4105	254	ComL DNA uptake lipoprotein [General function pred	90.31
PRK10564	303	maltose regulon periplasmic protein; Provisional	90.24
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	90.22
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	90.08
KOG4555	175	consensus TPR repeat-containing protein [Function	90.01
COG3118	304	Thioredoxin domain-containing protein [Posttransla	89.9
PF07575	566	Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR0	89.76
PF09205	161	DUF1955: Domain of unknown function (DUF1955); Int	89.62
KOG4555	175	consensus TPR repeat-containing protein [Function	89.49
PF13431	34	TPR_17: Tetratricopeptide repeat	89.49
PF07721	26	TPR_4: Tetratricopeptide repeat; InterPro: IPR0117	89.35
TIGR03504	44	FimV_Cterm FimV C-terminal domain. This protein is	88.95
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	88.58
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	88.58
COG4105	254	ComL DNA uptake lipoprotein [General function pred	88.38
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	87.98
PF07079	549	DUF1347: Protein of unknown function (DUF1347); In	87.79
TIGR02508	115	type_III_yscG type III secretion protein, YscG fam	87.48
PF11848	48	DUF3368: Domain of unknown function (DUF3368); Int	87.25
COG3898	531	Uncharacterized membrane-bound protein [Function u	87.18
PF11663	140	Toxin_YhaV: Toxin with endonuclease activity YhaV;	86.99
PF02259	352	FAT: FAT domain; InterPro: IPR003151 The FAT domai	86.85
PF13170	297	DUF4003: Protein of unknown function (DUF4003)	86.83
KOG4570	418	consensus Uncharacterized conserved protein [Funct	86.49
KOG2041	1189	consensus WD40 repeat protein [General function pr	86.39
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	86.32
COG4455	273	ImpE Protein of avirulence locus involved in tempe	86.05
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	86.04
PF10366	108	Vps39_1: Vacuolar sorting protein 39 domain 1; Int	85.45
PF07035	167	Mic1: Colon cancer-associated protein Mic1-like; I	85.11
PF14689	62	SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical do	84.49
PF02847	113	MA3: MA3 domain; InterPro: IPR003891 This entry re	84.43
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	84.01
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	83.44
KOG2063	877	consensus Vacuolar assembly/sorting proteins VPS39	83.41
PF14689	62	SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical do	83.38
PRK10564	303	maltose regulon periplasmic protein; Provisional	83.3
PRK11639	169	zinc uptake transcriptional repressor; Provisional	83.28
PF02847	113	MA3: MA3 domain; InterPro: IPR003891 This entry re	82.31
PF07163	309	Pex26: Pex26 protein; InterPro: IPR010797 This fam	81.91
PF10366	108	Vps39_1: Vacuolar sorting protein 39 domain 1; Int	81.67
PF10579	80	Rapsyn_N: Rapsyn N-terminal myristoylation and lin	81.12
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	81.02
COG1747	711	Uncharacterized N-terminal domain of the transcrip	80.98
PRK13342	413	recombination factor protein RarA; Reviewed	80.84
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	80.8
PF07163	309	Pex26: Pex26 protein; InterPro: IPR010797 This fam	80.77
smart00028	34	TPR Tetratricopeptide repeats. Repeats present in	80.63

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=100.00  E-value=7.9e-39  Score=255.28  Aligned_cols=176  Identities=32%  Similarity=0.549  Sum_probs=172.3

Q ss_pred             CcchhHHHHHHHHHHhcCChhHHHHHhccCCCCChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHHh
Q 036068            3 NKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTAR   82 (178)
Q Consensus         3 ~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~   82 (178)
                      .||..+|++||++|++.|++++|.++|++|+++|+.+||+||.+|++.|+.++|.++|++|.+.|+.||..||++++++|
T Consensus       256 ~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~  335 (697)
T PLN03081        256 VGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIF  335 (697)
T ss_pred             CccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence            47888999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHhcCChhhhc--------cchhhHHHHHHHHHhcCChhHHHHHHH
Q 036068           83 ANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ--------KDKFSWTTMIVGLAISGNGDKALDMFS  154 (178)
Q Consensus        83 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~--------~~~~~~~~li~~~~~~~~~~~a~~~~~  154 (178)
                      ++.|++++|.++++.|.+.|+.|+..++++|+++|+++|++++|.        ||..+||+||.+|++.|+.++|+++|+
T Consensus       336 ~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~~~G~~~~A~~lf~  415 (697)
T PLN03081        336 SRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFE  415 (697)
T ss_pred             HhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHcCCHHHHHHHHH
Confidence            999999999999999999999999999999999999999999998        899999999999999999999999999


Q ss_pred             HHHHcCCCCChhHHHHHHhhhhcC
Q 036068          155 QMLRASIKPDEVAYVGVLSACTHN  178 (178)
Q Consensus       155 ~m~~~g~~p~~~t~~~li~a~~~~  178 (178)
                      +|.+.|+.||..||+.+|.+|+++
T Consensus       416 ~M~~~g~~Pd~~T~~~ll~a~~~~  439 (697)
T PLN03081        416 RMIAEGVAPNHVTFLAVLSACRYS  439 (697)
T ss_pred             HHHHhCCCCCHHHHHHHHHHHhcC
Confidence            999999999999999999999874

>PLN03218 maturation of RBCL 1; Provisional

Probab=100.00  E-value=1.1e-36  Score=247.96  Aligned_cols=175  Identities=21%  Similarity=0.281  Sum_probs=146.4

Q ss_pred             CcchhHHHHHHHHHHhcCChhHHHHHhccCCC----CChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHH
Q 036068            3 NKDVISWTAIVSRYINRGQVDIARQCFDQMPE----RDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSI   78 (178)
Q Consensus         3 ~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l   78 (178)
                      +||..+|+++|.+|++.|++++|.++|++|.+    |+..+|+.+|.+|++.|++++|.++|++|.+.|+.||..||+++
T Consensus       576 ~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsL  655 (1060)
T PLN03218        576 DPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSAL  655 (1060)
T ss_pred             CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence            47777777777777777777777777777764    46678888888888888888888888888888888888888888


Q ss_pred             HHHhccccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHhcCChhhhc------------cchhhHHHHHHHHHhcCCh
Q 036068           79 LTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ------------KDKFSWTTMIVGLAISGNG  146 (178)
Q Consensus        79 l~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~------------~~~~~~~~li~~~~~~~~~  146 (178)
                      |.+|++.|++++|.++++.|.+.|+.|+..+|+.+|.+|++.|++++|.            ||..+||.||.+|++.|++
T Consensus       656 I~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~  735 (1060)
T PLN03218        656 VDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQL  735 (1060)
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCH
Confidence            8888888888888888888888888888888888888888888888876            7889999999999999999


Q ss_pred             hHHHHHHHHHHHcCCCCChhHHHHHHhhhhc
Q 036068          147 DKALDMFSQMLRASIKPDEVAYVGVLSACTH  177 (178)
Q Consensus       147 ~~a~~~~~~m~~~g~~p~~~t~~~li~a~~~  177 (178)
                      ++|.++|++|.+.|+.||..||+.||.+|++
T Consensus       736 eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k  766 (1060)
T PLN03218        736 PKALEVLSEMKRLGLCPNTITYSILLVASER  766 (1060)
T ss_pred             HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence            9999999999988999999999999988875

>PLN03218 maturation of RBCL 1; Provisional

Probab=100.00  E-value=2.3e-36  Score=246.01  Aligned_cols=175  Identities=22%  Similarity=0.348  Sum_probs=131.2

Q ss_pred             CcchhHHHHHHHHHHhcCChhHHHHHhccCC----CCChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHH
Q 036068            3 NKDVISWTAIVSRYINRGQVDIARQCFDQMP----ERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSI   78 (178)
Q Consensus         3 ~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~----~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l   78 (178)
                      +||..+|+++|.+|++.|++++|.++|++|.    .||..+|+.||.+|++.|++++|.++|++|.+.|+.||..||+++
T Consensus       469 ~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsL  548 (1060)
T PLN03218        469 KADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNAL  548 (1060)
T ss_pred             CCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence            4677777777777777777777777777776    367777777777777777777777777777777777777777777


Q ss_pred             HHHhccccchhhHHHHHHHHHH--hCcccchHHHHHHHHHHHhcCChhhhc------------cchhhHHHHHHHHHhcC
Q 036068           79 LTARANLRALDLGEWIKTYIDK--NKVKNDIFAGNALIDMYCICADVEKAQ------------KDKFSWTTMIVGLAISG  144 (178)
Q Consensus        79 l~~~~~~~~~~~a~~~~~~m~~--~~~~~~~~~~~~ll~~~~~~~~~~~a~------------~~~~~~~~li~~~~~~~  144 (178)
                      |.+|++.|++++|.+++++|.+  .|+.|+..+|+.+|.+|++.|++++|.            |+..+||.+|.+|++.|
T Consensus       549 I~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G  628 (1060)
T PLN03218        549 ISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKG  628 (1060)
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcC
Confidence            7777777777777777777765  466777777777777777777777765            56677777777777777


Q ss_pred             ChhHHHHHHHHHHHcCCCCChhHHHHHHhhhhc
Q 036068          145 NGDKALDMFSQMLRASIKPDEVAYVGVLSACTH  177 (178)
Q Consensus       145 ~~~~a~~~~~~m~~~g~~p~~~t~~~li~a~~~  177 (178)
                      ++++|.++|++|.+.|+.||..||+.+|++|++
T Consensus       629 ~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k  661 (1060)
T PLN03218        629 DWDFALSIYDDMKKKGVKPDEVFFSALVDVAGH  661 (1060)
T ss_pred             CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Confidence            777777777777777777777777777777765

>PLN03077 Protein ECB2; Provisional

Probab=100.00  E-value=4.9e-36  Score=243.91  Aligned_cols=175  Identities=37%  Similarity=0.561  Sum_probs=171.4

Q ss_pred             CcchhHHHHHHHHHHhcCChhHHHHHhccCCCCChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHHh
Q 036068            3 NKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTAR   82 (178)
Q Consensus         3 ~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~   82 (178)
                      +||+.+||++|.+|++.|++++|.++|++|+++|..+||++|.+|++.|+.++|+++|++|.+.|+.||..||+.++.+|
T Consensus       219 ~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~  298 (857)
T PLN03077        219 ELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISAC  298 (857)
T ss_pred             CcccchHhHHHHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHH
Confidence            47889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHhcCChhhhc--------cchhhHHHHHHHHHhcCChhHHHHHHH
Q 036068           83 ANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ--------KDKFSWTTMIVGLAISGNGDKALDMFS  154 (178)
Q Consensus        83 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~--------~~~~~~~~li~~~~~~~~~~~a~~~~~  154 (178)
                      ++.|+.+.+.+++..|.+.|+.||..+||.++.+|++.|++++|.        ||..+||.+|.+|++.|++++|+++|+
T Consensus       299 ~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~  378 (857)
T PLN03077        299 ELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYA  378 (857)
T ss_pred             HhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHH
Confidence            999999999999999999999999999999999999999999998        899999999999999999999999999


Q ss_pred             HHHHcCCCCChhHHHHHHhhhhc
Q 036068          155 QMLRASIKPDEVAYVGVLSACTH  177 (178)
Q Consensus       155 ~m~~~g~~p~~~t~~~li~a~~~  177 (178)
                      +|.+.|+.||..||+.+|.+|++
T Consensus       379 ~M~~~g~~Pd~~t~~~ll~a~~~  401 (857)
T PLN03077        379 LMEQDNVSPDEITIASVLSACAC  401 (857)
T ss_pred             HHHHhCCCCCceeHHHHHHHHhc
Confidence            99999999999999999999975

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=100.00  E-value=1.1e-35  Score=237.19  Aligned_cols=175  Identities=29%  Similarity=0.517  Sum_probs=171.8

Q ss_pred             CcchhHHHHHHHHHHhcCChhHHHHHhccCCCCChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHHh
Q 036068            3 NKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTAR   82 (178)
Q Consensus         3 ~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~   82 (178)
                      .||+.+|+.++.+|++.|++++|.++|++|++||..+||++|.+|++.|++++|+++|++|.+.|+.|+..||+.++.+|
T Consensus       155 ~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~  234 (697)
T PLN03081        155 EPDQYMMNRVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRAS  234 (697)
T ss_pred             CcchHHHHHHHHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHH
Confidence            48999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHhcCChhhhc--------cchhhHHHHHHHHHhcCChhHHHHHHH
Q 036068           83 ANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ--------KDKFSWTTMIVGLAISGNGDKALDMFS  154 (178)
Q Consensus        83 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~--------~~~~~~~~li~~~~~~~~~~~a~~~~~  154 (178)
                      ++.|+.+.+.+++..+.+.|+.++..+++.||++|+++|++++|.        +|+.+||.||.+|++.|++++|+++|+
T Consensus       235 ~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~  314 (697)
T PLN03081        235 AGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYY  314 (697)
T ss_pred             hcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHH
Confidence            999999999999999999999999999999999999999999998        799999999999999999999999999


Q ss_pred             HHHHcCCCCChhHHHHHHhhhhc
Q 036068          155 QMLRASIKPDEVAYVGVLSACTH  177 (178)
Q Consensus       155 ~m~~~g~~p~~~t~~~li~a~~~  177 (178)
                      +|.+.|+.||..||+.+|.+|++
T Consensus       315 ~M~~~g~~pd~~t~~~ll~a~~~  337 (697)
T PLN03081        315 EMRDSGVSIDQFTFSIMIRIFSR  337 (697)
T ss_pred             HHHHcCCCCCHHHHHHHHHHHHh
Confidence            99999999999999999999986

>PLN03077 Protein ECB2; Provisional

Probab=100.00  E-value=1.5e-34  Score=235.29  Aligned_cols=176  Identities=30%  Similarity=0.494  Sum_probs=171.4

Q ss_pred             CCcchhHHHHHHHHHHhcCChhHHHHHhccCCCCChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHH
Q 036068            2 KNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTA   81 (178)
Q Consensus         2 ~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~   81 (178)
                      +.+++..+|++|.+|++.|+++.|.++|++|++||..+||++|.+|++.|++++|.++|++|...|+.||..||++++++
T Consensus       117 ~~~~~~~~n~li~~~~~~g~~~~A~~~f~~m~~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~  196 (857)
T PLN03077        117 PSLGVRLGNAMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRT  196 (857)
T ss_pred             CCCCchHHHHHHHHHHhCCChHHHHHHHhcCCCCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHH
Confidence            45788899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hccccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHhcCChhhhc--------cchhhHHHHHHHHHhcCChhHHHHHH
Q 036068           82 RANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ--------KDKFSWTTMIVGLAISGNGDKALDMF  153 (178)
Q Consensus        82 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~--------~~~~~~~~li~~~~~~~~~~~a~~~~  153 (178)
                      |++.++++.+.+++..|.+.|+.|++.++|.+|.+|++.|++++|.        +|..+||++|.+|++.|++++|+++|
T Consensus       197 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf  276 (857)
T PLN03077        197 CGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELF  276 (857)
T ss_pred             hCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHH
Confidence            9999999999999999999999999999999999999999999997        79999999999999999999999999


Q ss_pred             HHHHHcCCCCChhHHHHHHhhhhc
Q 036068          154 SQMLRASIKPDEVAYVGVLSACTH  177 (178)
Q Consensus       154 ~~m~~~g~~p~~~t~~~li~a~~~  177 (178)
                      ++|.+.|+.||..||+.+|.+|++
T Consensus       277 ~~M~~~g~~Pd~~ty~~ll~a~~~  300 (857)
T PLN03077        277 FTMRELSVDPDLMTITSVISACEL  300 (857)
T ss_pred             HHHHHcCCCCChhHHHHHHHHHHh
Confidence            999999999999999999999875

>PF13041 PPR_2: PPR repeat family

Probab=99.73  E-value=1e-17  Score=89.51  Aligned_cols=50  Identities=28%  Similarity=0.515  Sum_probs=48.8

Q ss_pred             cchhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhHHHHHHhhhhc
Q 036068          128 KDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACTH  177 (178)
Q Consensus       128 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~a~~~  177 (178)
                      ||+.+||++|.+|++.|++++|+++|++|++.|+.||..||+.+|++|+|
T Consensus         1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k   50 (50)
T PF13041_consen    1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK   50 (50)
T ss_pred             CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence            78999999999999999999999999999999999999999999999986

>PF13041 PPR_2: PPR repeat family

Probab=99.69  E-value=1.3e-16  Score=85.14  Aligned_cols=50  Identities=32%  Similarity=0.602  Sum_probs=43.8

Q ss_pred             CChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHHhcc
Q 036068           35 RDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARAN   84 (178)
Q Consensus        35 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~   84 (178)
                      ||+.+||++|++|++.|++++|+++|++|.+.|+.||..||+++|++|++
T Consensus         1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k   50 (50)
T PF13041_consen    1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK   50 (50)
T ss_pred             CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence            68888888888888888888888888888888888888888888888875

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=99.61  E-value=8.7e-14  Score=104.74  Aligned_cols=167  Identities=9%  Similarity=0.022  Sum_probs=92.2

Q ss_pred             chhHHHHHHHHHHhcCChhHHHHHhccCCCC--C------hhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHH
Q 036068            5 DVISWTAIVSRYINRGQVDIARQCFDQMPER--D------YVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIV   76 (178)
Q Consensus         5 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~--~------~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~   76 (178)
                      +..+++.++..+.+.|++++|.+.++.+.+.  +      ...+..+...+.+.|++++|...|+++.+.. +.+...+.
T Consensus       140 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~  218 (389)
T PRK11788        140 AEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAAD-PQCVRASI  218 (389)
T ss_pred             hHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHC-cCCHHHHH
Confidence            3444555555555555555555555544321  0      1123334444555555555555555555432 12234455


Q ss_pred             HHHHHhccccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHhcCChhhhc----------cchhhHHHHHHHHHhcCCh
Q 036068           77 SILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ----------KDKFSWTTMIVGLAISGNG  146 (178)
Q Consensus        77 ~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~----------~~~~~~~~li~~~~~~~~~  146 (178)
                      .+...+.+.|++++|.++++.+.+.+......+++.+...|.+.|++++|.          |+...+..+...+.+.|++
T Consensus       219 ~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~la~~~~~~g~~  298 (389)
T PRK11788        219 LLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEYPGADLLLALAQLLEEQEGP  298 (389)
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhCCH
Confidence            555666666666666666666665443333445566666666666666665          4555556666667777777


Q ss_pred             hHHHHHHHHHHHcCCCCChhHHHHHHhh
Q 036068          147 DKALDMFSQMLRASIKPDEVAYVGVLSA  174 (178)
Q Consensus       147 ~~a~~~~~~m~~~g~~p~~~t~~~li~a  174 (178)
                      ++|..+++++.+.  .|+..++..++..
T Consensus       299 ~~A~~~l~~~l~~--~P~~~~~~~l~~~  324 (389)
T PRK11788        299 EAAQALLREQLRR--HPSLRGFHRLLDY  324 (389)
T ss_pred             HHHHHHHHHHHHh--CcCHHHHHHHHHH
Confidence            7777777766654  4666666655544

>KOG4422 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.58  E-value=5.8e-14  Score=103.11  Aligned_cols=169  Identities=13%  Similarity=0.153  Sum_probs=136.3

Q ss_pred             CcchhHHHHHHHHHHhcCChhHHHHHhccCCC----CChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHH
Q 036068            3 NKDVISWTAIVSRYINRGQVDIARQCFDQMPE----RDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSI   78 (178)
Q Consensus         3 ~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l   78 (178)
                      +.+..+|.++|.++++--..+.|.+++++-+.    -+..+||.+|.+-.-..    .-+++.+|....++||..|+|++
T Consensus       204 PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~----~K~Lv~EMisqkm~Pnl~TfNal  279 (625)
T KOG4422|consen  204 PKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSV----GKKLVAEMISQKMTPNLFTFNAL  279 (625)
T ss_pred             CCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhc----cHHHHHHHHHhhcCCchHhHHHH
Confidence            46778999999999999999999999999875    38889999998765433    36788999999999999999999


Q ss_pred             HHHhccccchhh----HHHHHHHHHHhCcccchHHHHHHHHHHHhcCChhhhc---------------------------
Q 036068           79 LTARANLRALDL----GEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ---------------------------  127 (178)
Q Consensus        79 l~~~~~~~~~~~----a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~---------------------------  127 (178)
                      +++..+.|+++.    |.+++.+|++-|++|+..+|..+|.-+++-++..+..                           
T Consensus       280 L~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF  359 (625)
T KOG4422|consen  280 LSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFF  359 (625)
T ss_pred             HHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHH
Confidence            999999998764    6778899999999999999999999999998886543                           


Q ss_pred             ------------------------------------cchhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhHHHHH
Q 036068          128 ------------------------------------KDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGV  171 (178)
Q Consensus       128 ------------------------------------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~l  171 (178)
                                                          ...+-|..+....|+....+.-...|+.|.-+-+.|+..+...+
T Consensus       360 ~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~  439 (625)
T KOG4422|consen  360 QSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHL  439 (625)
T ss_pred             HHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHH
Confidence                                                12333455556666666666666777777766677777777777


Q ss_pred             Hhhh
Q 036068          172 LSAC  175 (178)
Q Consensus       172 i~a~  175 (178)
                      ++|.
T Consensus       440 lrA~  443 (625)
T KOG4422|consen  440 LRAL  443 (625)
T ss_pred             HHHH
Confidence            7764

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=99.53  E-value=1.5e-12  Score=98.10  Aligned_cols=165  Identities=12%  Similarity=0.098  Sum_probs=92.9

Q ss_pred             HHHHHHHHHHhcCChhHHHHHhccCCC---CChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCc----HHHHHHHHH
Q 036068            8 SWTAIVSRYINRGQVDIARQCFDQMPE---RDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGD----EFTIVSILT   80 (178)
Q Consensus         8 ~~~~li~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~----~~~~~~ll~   80 (178)
                      .+..+...+.+.|++++|..+|+++.+   .+..+++.+...+.+.|++++|.+.++++.+.+..+.    ...+..+..
T Consensus       109 ~~~~La~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~  188 (389)
T PRK11788        109 ALQELGQDYLKAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQ  188 (389)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHH
Confidence            455555666666666666666665543   2445566666666666666666666666655432221    112334455


Q ss_pred             HhccccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHhcCChhhhc----------cc--hhhHHHHHHHHHhcCChhH
Q 036068           81 ARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ----------KD--KFSWTTMIVGLAISGNGDK  148 (178)
Q Consensus        81 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~----------~~--~~~~~~li~~~~~~~~~~~  148 (178)
                      .+.+.|++++|...++.+.+... .+...+..+...|.+.|++++|.          |+  ..+++.+...|.+.|++++
T Consensus       189 ~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~  267 (389)
T PRK11788        189 QALARGDLDAARALLKKALAADP-QCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAE  267 (389)
T ss_pred             HHHhCCCHHHHHHHHHHHHhHCc-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHH
Confidence            55566666666666666655432 23445555556666666666665          22  2345666667777777777


Q ss_pred             HHHHHHHHHHcCCCCChhHHHHHHhhh
Q 036068          149 ALDMFSQMLRASIKPDEVAYVGVLSAC  175 (178)
Q Consensus       149 a~~~~~~m~~~g~~p~~~t~~~li~a~  175 (178)
                      |.+.++++.+.  .|+...+..+...+
T Consensus       268 A~~~l~~~~~~--~p~~~~~~~la~~~  292 (389)
T PRK11788        268 GLEFLRRALEE--YPGADLLLALAQLL  292 (389)
T ss_pred             HHHHHHHHHHh--CCCchHHHHHHHHH
Confidence            77777776654  35555555444444

>KOG4422 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.42  E-value=5.4e-12  Score=92.95  Aligned_cols=127  Identities=16%  Similarity=0.219  Sum_probs=104.0

Q ss_pred             HhccCCCCChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHHhccccchhhHHHHHHHHHHhCcccch
Q 036068           28 CFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDI  107 (178)
Q Consensus        28 ~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~  107 (178)
                      ++-+..-++..+|.++|.++|+-...+.|.+++++-.+...+.+..+||.+|.+-.-    ....+++.+|.+..+.|+.
T Consensus       198 L~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~----~~~K~Lv~EMisqkm~Pnl  273 (625)
T KOG4422|consen  198 LLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSY----SVGKKLVAEMISQKMTPNL  273 (625)
T ss_pred             HHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHh----hccHHHHHHHHHhhcCCch
Confidence            444555568899999999999999999999999999888888899999999887543    2337899999999999999


Q ss_pred             HHHHHHHHHHHhcCChhhhccchhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhHHHHHHhhhhc
Q 036068          108 FAGNALIDMYCICADVEKAQKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACTH  177 (178)
Q Consensus       108 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~a~~~  177 (178)
                      .|+|+++++..+.|+++.+.                   ..|++++.+|++-|+.|+..+|..+|.-+.+
T Consensus       274 ~TfNalL~c~akfg~F~~ar-------------------~aalqil~EmKeiGVePsLsSyh~iik~f~r  324 (625)
T KOG4422|consen  274 FTFNALLSCAAKFGKFEDAR-------------------KAALQILGEMKEIGVEPSLSSYHLIIKNFKR  324 (625)
T ss_pred             HhHHHHHHHHHHhcchHHHH-------------------HHHHHHHHHHHHhCCCcchhhHHHHHHHhcc
Confidence            99999999988888888652                   3567788888888888888888888776543

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=99.39  E-value=6.5e-11  Score=96.99  Aligned_cols=169  Identities=12%  Similarity=0.049  Sum_probs=115.0

Q ss_pred             chhHHHHHHHHHHhcCChhHHHHHhccCCC--CChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHHh
Q 036068            5 DVISWTAIVSRYINRGQVDIARQCFDQMPE--RDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTAR   82 (178)
Q Consensus         5 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~   82 (178)
                      +...+..+...+.+.|++++|.+.|+++.+  |+..++..+...+.+.|++++|.+.++++.+.. +.+...+..+...|
T Consensus       702 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~  780 (899)
T TIGR02917       702 AALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQNAIKLHRALLASGNTAEAVKTLEAWLKTH-PNDAVLRTALAELY  780 (899)
T ss_pred             ChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence            334455555555556666666666555432  344555556666666666666666666666543 34566677777777


Q ss_pred             ccccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHhcCChhhhc-----------cchhhHHHHHHHHHhcCChhHHHH
Q 036068           83 ANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ-----------KDKFSWTTMIVGLAISGNGDKALD  151 (178)
Q Consensus        83 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~-----------~~~~~~~~li~~~~~~~~~~~a~~  151 (178)
                      .+.|++++|.++|+.+.+..+ .++.+++.+...+.+.|+ .+|.           .+...+..+...+...|++++|.+
T Consensus       781 ~~~g~~~~A~~~~~~~~~~~p-~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~  858 (899)
T TIGR02917       781 LAQKDYDKAIKHYRTVVKKAP-DNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGEADRALP  858 (899)
T ss_pred             HHCcCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHH
Confidence            777888888888877777653 467777777778888777 5555           355667788888899999999999


Q ss_pred             HHHHHHHcCCCCChhHHHHHHhhhhc
Q 036068          152 MFSQMLRASIKPDEVAYVGVLSACTH  177 (178)
Q Consensus       152 ~~~~m~~~g~~p~~~t~~~li~a~~~  177 (178)
                      +|+++.+.+- .+..++..+..++.+
T Consensus       859 ~~~~a~~~~~-~~~~~~~~l~~~~~~  883 (899)
T TIGR02917       859 LLRKAVNIAP-EAAAIRYHLALALLA  883 (899)
T ss_pred             HHHHHHhhCC-CChHHHHHHHHHHHH
Confidence            9999998653 377787777776653

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=99.37  E-value=1.2e-10  Score=95.41  Aligned_cols=168  Identities=10%  Similarity=0.062  Sum_probs=90.5

Q ss_pred             cchhHHHHHHHHHHhcCChhHHHHHhccCCC---CChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCC------------
Q 036068            4 KDVISWTAIVSRYINRGQVDIARQCFDQMPE---RDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNI------------   68 (178)
Q Consensus         4 p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~------------   68 (178)
                      .+...|..+...+.+.|++++|.+.|+++.+   .+...+..+...+.+.|++++|...|+++.+..-            
T Consensus       599 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~  678 (899)
T TIGR02917       599 DSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQL  678 (899)
T ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence            3445566666666666666666666655432   2344455555555555555555555555444321            


Q ss_pred             ---------------------CCcHHHHHHHHHHhccccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHhcCChhhhc
Q 036068           69 ---------------------MGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ  127 (178)
Q Consensus        69 ---------------------~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~  127 (178)
                                           +.+...+..+...+.+.|++++|...++.+.+.+.  +..++..+...+.+.|+.++|.
T Consensus       679 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~  756 (899)
T TIGR02917       679 LLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAP--SSQNAIKLHRALLASGNTAEAV  756 (899)
T ss_pred             HHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCC--CchHHHHHHHHHHHCCCHHHHH
Confidence                                 22334444444555555555555555555554432  2244445555555566655554


Q ss_pred             -----------cchhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhHHHHHHhh
Q 036068          128 -----------KDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA  174 (178)
Q Consensus       128 -----------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~a  174 (178)
                                 .+...++.+...|...|++++|.+.|+++.+.+ +++...+..+...
T Consensus       757 ~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~  813 (899)
T TIGR02917       757 KTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKA-PDNAVVLNNLAWL  813 (899)
T ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence                       345566666667777777777777777776642 3344555554443

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=99.25  E-value=3.2e-09  Score=73.71  Aligned_cols=165  Identities=12%  Similarity=0.056  Sum_probs=132.7

Q ss_pred             chhHHHHHHHHHHhcCChhHHHHHhccCCC--C-ChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHH
Q 036068            5 DVISWTAIVSRYINRGQVDIARQCFDQMPE--R-DYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTA   81 (178)
Q Consensus         5 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~   81 (178)
                      ....+..+...+...|++++|.+.+++..+  | +...+..+...+...|++++|.+.+++..+.. +.+...+..+...
T Consensus        30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~  108 (234)
T TIGR02521        30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTF  108 (234)
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHH
Confidence            356788889999999999999999997653  3 56788888899999999999999999988765 3355677788888


Q ss_pred             hccccchhhHHHHHHHHHHhCc-ccchHHHHHHHHHHHhcCChhhhc----------c-chhhHHHHHHHHHhcCChhHH
Q 036068           82 RANLRALDLGEWIKTYIDKNKV-KNDIFAGNALIDMYCICADVEKAQ----------K-DKFSWTTMIVGLAISGNGDKA  149 (178)
Q Consensus        82 ~~~~~~~~~a~~~~~~m~~~~~-~~~~~~~~~ll~~~~~~~~~~~a~----------~-~~~~~~~li~~~~~~~~~~~a  149 (178)
                      +...|++++|.+.++...+... ......+..+...+.+.|++++|.          | +...+..+...+...|++++|
T Consensus       109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A  188 (234)
T TIGR02521       109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDA  188 (234)
T ss_pred             HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHH
Confidence            9999999999999999887532 223556777888899999999987          2 456788888999999999999


Q ss_pred             HHHHHHHHHcCCCCChhHHHHH
Q 036068          150 LDMFSQMLRASIKPDEVAYVGV  171 (178)
Q Consensus       150 ~~~~~~m~~~g~~p~~~t~~~l  171 (178)
                      .+.+++..+. .+.+...+..+
T Consensus       189 ~~~~~~~~~~-~~~~~~~~~~~  209 (234)
T TIGR02521       189 RAYLERYQQT-YNQTAESLWLG  209 (234)
T ss_pred             HHHHHHHHHh-CCCCHHHHHHH
Confidence            9999999876 23334444333

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>PF12854 PPR_1: PPR repeat

Probab=99.10  E-value=1.2e-10  Score=56.43  Aligned_cols=31  Identities=32%  Similarity=0.651  Sum_probs=22.0

Q ss_pred             CcchhHHHHHHHHHHhcCChhHHHHHhccCC
Q 036068            3 NKDVISWTAIVSRYINRGQVDIARQCFDQMP   33 (178)
Q Consensus         3 ~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~   33 (178)
                      +||..+||+||++|++.|++++|.++|++|+
T Consensus         4 ~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~   34 (34)
T PF12854_consen    4 EPDVVTYNTLIDGYCKAGRVDEAFELFDEMK   34 (34)
T ss_pred             CCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence            4777777777777777777777777777764

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=99.10  E-value=8.6e-10  Score=79.75  Aligned_cols=166  Identities=16%  Similarity=0.166  Sum_probs=90.8

Q ss_pred             chhHHHHHHHHHHhcCChhHHHHHhccCC--CCChhHHHHHHHHHhhcCChhHHHHHHHHhHhCC-CCCcHHHHHHHHHH
Q 036068            5 DVISWTAIVSRYINRGQVDIARQCFDQMP--ERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSN-IMGDEFTIVSILTA   81 (178)
Q Consensus         5 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~--~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~-~~~~~~~~~~ll~~   81 (178)
                      ++..+..++.. ...+++++|.+++++.-  .++...+...+..+.+.++++++.+++++..... ...+...|..+...
T Consensus        77 ~~~~~~~l~~l-~~~~~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~  155 (280)
T PF13429_consen   77 NPQDYERLIQL-LQDGDPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEI  155 (280)
T ss_dssp             ------------------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHH
T ss_pred             ccccccccccc-cccccccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHH
Confidence            34456666666 68888888888887663  3566777888888888889999888888876432 34566777788888


Q ss_pred             hccccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHhcCChhhhc-----------cchhhHHHHHHHHHhcCChhHHH
Q 036068           82 RANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ-----------KDKFSWTTMIVGLAISGNGDKAL  150 (178)
Q Consensus        82 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~-----------~~~~~~~~li~~~~~~~~~~~a~  150 (178)
                      +.+.|+.++|...++...+..+. ++.+.+.++..+...|+.+++.           .|...|..+..++...|+.++|+
T Consensus       156 ~~~~G~~~~A~~~~~~al~~~P~-~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al  234 (280)
T PF13429_consen  156 YEQLGDPDKALRDYRKALELDPD-DPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEAL  234 (280)
T ss_dssp             HHHCCHHHHHHHHHHHHHHH-TT--HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccc
Confidence            88889999999999888887643 5777888888888888888744           46777888888888889999999


Q ss_pred             HHHHHHHHcCCCC-ChhHHHHHHhh
Q 036068          151 DMFSQMLRASIKP-DEVAYVGVLSA  174 (178)
Q Consensus       151 ~~~~~m~~~g~~p-~~~t~~~li~a  174 (178)
                      .+|++..+.  .| |......+-++
T Consensus       235 ~~~~~~~~~--~p~d~~~~~~~a~~  257 (280)
T PF13429_consen  235 EYLEKALKL--NPDDPLWLLAYADA  257 (280)
T ss_dssp             HHHHHHHHH--STT-HHHHHHHHHH
T ss_pred             ccccccccc--cccccccccccccc
Confidence            999888764  35 44444444443

>PF12854 PPR_1: PPR repeat

Probab=99.08  E-value=1.3e-10  Score=56.31  Aligned_cols=32  Identities=9%  Similarity=-0.020  Sum_probs=20.3

Q ss_pred             CCCCcHHHHHHHHHHhccccchhhHHHHHHHH
Q 036068           67 NIMGDEFTIVSILTARANLRALDLGEWIKTYI   98 (178)
Q Consensus        67 ~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m   98 (178)
                      |+.||..||+++|++||+.|++++|.++|++|
T Consensus         2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M   33 (34)
T PF12854_consen    2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM   33 (34)
T ss_pred             CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence            55666666666666666666666666666655

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=99.07  E-value=4e-09  Score=76.28  Aligned_cols=152  Identities=18%  Similarity=0.162  Sum_probs=97.6

Q ss_pred             cchhHHHHHHHHHHhcCChhHHHHHhccCC-----CCChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCC-cHHHHHH
Q 036068            4 KDVISWTAIVSRYINRGQVDIARQCFDQMP-----ERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMG-DEFTIVS   77 (178)
Q Consensus         4 p~~~~~~~li~~~~~~~~~~~a~~~~~~m~-----~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~-~~~~~~~   77 (178)
                      ++...+..++..+.+.++++++.+++++..     ..+...|..+...+.+.|+.++|.+.+++..+..  | |......
T Consensus       108 ~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~--P~~~~~~~~  185 (280)
T PF13429_consen  108 GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALELD--PDDPDARNA  185 (280)
T ss_dssp             ----------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH---TT-HHHHHH
T ss_pred             cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCHHHHHH
Confidence            455667788888889999999988888754     2477788888888899999999999999988874  4 4677888


Q ss_pred             HHHHhccccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHhcCChhhhc-----------cchhhHHHHHHHHHhcCCh
Q 036068           78 ILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ-----------KDKFSWTTMIVGLAISGNG  146 (178)
Q Consensus        78 ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~-----------~~~~~~~~li~~~~~~~~~  146 (178)
                      ++..+...|+.+++.++++...+.. +.++..+..+..+|...|+.++|.           .|......+...+...|+.
T Consensus       186 l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~  264 (280)
T PF13429_consen  186 LAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPLWLLAYADALEQAGRK  264 (280)
T ss_dssp             HHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT-----
T ss_pred             HHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccccccccccccccccccccccccc
Confidence            8888999999999888888887775 556777888899999999999987           3677777888899999999


Q ss_pred             hHHHHHHHHHHH
Q 036068          147 DKALDMFSQMLR  158 (178)
Q Consensus       147 ~~a~~~~~~m~~  158 (178)
                      ++|.++.++..+
T Consensus       265 ~~A~~~~~~~~~  276 (280)
T PF13429_consen  265 DEALRLRRQALR  276 (280)
T ss_dssp             ------------
T ss_pred             cccccccccccc
Confidence            999998887654

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=99.01  E-value=9.2e-08  Score=66.37  Aligned_cols=155  Identities=12%  Similarity=0.068  Sum_probs=126.6

Q ss_pred             cchhHHHHHHHHHHhcCChhHHHHHhccCCC---CChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCC-CcHHHHHHHH
Q 036068            4 KDVISWTAIVSRYINRGQVDIARQCFDQMPE---RDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIM-GDEFTIVSIL   79 (178)
Q Consensus         4 p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~-~~~~~~~~ll   79 (178)
                      .+...+..+...+...|++++|.+.+++..+   .+...+..+...+...|++++|.+.+++..+.... .....+..+.
T Consensus        63 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~  142 (234)
T TIGR02521        63 DDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAG  142 (234)
T ss_pred             ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHH
Confidence            3466788899999999999999999997653   35667888888999999999999999998775322 2345667778


Q ss_pred             HHhccccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHhcCChhhhc-----------cchhhHHHHHHHHHhcCChhH
Q 036068           80 TARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ-----------KDKFSWTTMIVGLAISGNGDK  148 (178)
Q Consensus        80 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~-----------~~~~~~~~li~~~~~~~~~~~  148 (178)
                      .++.+.|++++|.+.+....+.... +...+..+...+...|++++|.           .+...+..+...+...|+.++
T Consensus       143 ~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  221 (234)
T TIGR02521       143 LCALKAGDFDKAEKYLTRALQIDPQ-RPESLLELAELYYLRGQYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAA  221 (234)
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhCcC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHH
Confidence            8899999999999999998887543 5677888899999999999986           245666677888889999999


Q ss_pred             HHHHHHHHHHc
Q 036068          149 ALDMFSQMLRA  159 (178)
Q Consensus       149 a~~~~~~m~~~  159 (178)
                      |..+.+.+.+.
T Consensus       222 a~~~~~~~~~~  232 (234)
T TIGR02521       222 AQRYGAQLQKL  232 (234)
T ss_pred             HHHHHHHHHhh
Confidence            99998887653

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif)

Probab=99.00  E-value=1e-09  Score=53.56  Aligned_cols=35  Identities=37%  Similarity=0.714  Sum_probs=33.1

Q ss_pred             hhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCh
Q 036068          131 FSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDE  165 (178)
Q Consensus       131 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~  165 (178)
                      .+||++|.+|++.|++++|.++|++|.+.|+.||.
T Consensus         1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~   35 (35)
T TIGR00756         1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV   35 (35)
T ss_pred             CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence            47999999999999999999999999999999984

This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=98.99  E-value=1.1e-07  Score=76.54  Aligned_cols=118  Identities=6%  Similarity=-0.093  Sum_probs=50.9

Q ss_pred             hhHHHHHHHHHHhcCChhHHHHHhccCC--CC-ChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHHh
Q 036068            6 VISWTAIVSRYINRGQVDIARQCFDQMP--ER-DYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTAR   82 (178)
Q Consensus         6 ~~~~~~li~~~~~~~~~~~a~~~~~~m~--~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~   82 (178)
                      ...+..+...+...|++++|...++.+.  .| +...+..+ ..+...|++++|...++++....-.++...+..+..++
T Consensus       144 ~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l  222 (656)
T PRK15174        144 SQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGDMIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTL  222 (656)
T ss_pred             HHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHH
Confidence            3344455555555555555555554332  11 11122111 22444455555555555444332112222333333444


Q ss_pred             ccccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHhcCChhh
Q 036068           83 ANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEK  125 (178)
Q Consensus        83 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~  125 (178)
                      .+.|++++|...++...+... .+...+..+-..|...|++++
T Consensus       223 ~~~g~~~eA~~~~~~al~~~p-~~~~~~~~Lg~~l~~~G~~~e  264 (656)
T PRK15174        223 CAVGKYQEAIQTGESALARGL-DGAALRRSLGLAYYQSGRSRE  264 (656)
T ss_pred             HHCCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHcCCchh
Confidence            455555555555555444332 134444444455555555443

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=98.98  E-value=7.2e-08  Score=77.11  Aligned_cols=153  Identities=10%  Similarity=-0.108  Sum_probs=129.4

Q ss_pred             chhHHHHHHHHHHhcCChhHHHHHhccCCC--C-ChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHH
Q 036068            5 DVISWTAIVSRYINRGQVDIARQCFDQMPE--R-DYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTA   81 (178)
Q Consensus         5 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~   81 (178)
                      +...|+.+...+...|++++|...|++..+  | +...|..+...+...|++++|...|++..+.. +-+...|..+...
T Consensus       330 ~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~  408 (615)
T TIGR00990       330 EAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQL  408 (615)
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence            345678888888899999999999998754  4 45678888888999999999999999987764 3357788888999


Q ss_pred             hccccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHhcCChhhhc----------c-chhhHHHHHHHHHhcCChhHHH
Q 036068           82 RANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ----------K-DKFSWTTMIVGLAISGNGDKAL  150 (178)
Q Consensus        82 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~----------~-~~~~~~~li~~~~~~~~~~~a~  150 (178)
                      +...|++++|...|+...+..+. +...+..+...+.+.|++++|.          | +...|+.+...+...|++++|.
T Consensus       409 ~~~~g~~~~A~~~~~kal~l~P~-~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~  487 (615)
T TIGR00990       409 HFIKGEFAQAGKDYQKSIDLDPD-FIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAI  487 (615)
T ss_pred             HHHcCCHHHHHHHHHHHHHcCcc-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHH
Confidence            99999999999999999887643 5677788888899999999987          3 5778889999999999999999


Q ss_pred             HHHHHHHHc
Q 036068          151 DMFSQMLRA  159 (178)
Q Consensus       151 ~~~~~m~~~  159 (178)
                      +.|++..+.
T Consensus       488 ~~~~~Al~l  496 (615)
T TIGR00990       488 EKFDTAIEL  496 (615)
T ss_pred             HHHHHHHhc
Confidence            999998864

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=98.96  E-value=1.7e-07  Score=75.45  Aligned_cols=143  Identities=13%  Similarity=0.007  Sum_probs=84.9

Q ss_pred             HHHhcCChhHHHHHhccCCCC----ChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHHhccccchhh
Q 036068           15 RYINRGQVDIARQCFDQMPER----DYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANLRALDL   90 (178)
Q Consensus        15 ~~~~~~~~~~a~~~~~~m~~~----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~   90 (178)
                      .+.+.|++++|...++.+.+.    +...+..+...+.+.|++++|...+++..+.. +.+...+..+-..+.+.|++++
T Consensus       186 ~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~e  264 (656)
T PRK15174        186 SFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSRE  264 (656)
T ss_pred             HHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchh
Confidence            366677777777777765431    23333444556666777777777777766553 2244555556666666666664


Q ss_pred             ----HHHHHHHHHHhCcccchHHHHHHHHHHHhcCChhhhc----------c-chhhHHHHHHHHHhcCChhHHHHHHHH
Q 036068           91 ----GEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ----------K-DKFSWTTMIVGLAISGNGDKALDMFSQ  155 (178)
Q Consensus        91 ----a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~----------~-~~~~~~~li~~~~~~~~~~~a~~~~~~  155 (178)
                          |...++...+..+. +...+..+...+.+.|++++|.          | +...+..+...+.+.|++++|...|++
T Consensus       265 A~~~A~~~~~~Al~l~P~-~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~  343 (656)
T PRK15174        265 AKLQAAEHWRHALQFNSD-NVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQ  343 (656)
T ss_pred             hHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence                56666666655432 4556666666666666666665          2 334455555666666666666666666


Q ss_pred             HHHc
Q 036068          156 MLRA  159 (178)
Q Consensus       156 m~~~  159 (178)
                      +.+.
T Consensus       344 al~~  347 (656)
T PRK15174        344 LARE  347 (656)
T ss_pred             HHHh
Confidence            6543

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=98.94  E-value=2.2e-07  Score=74.31  Aligned_cols=152  Identities=13%  Similarity=-0.002  Sum_probs=98.7

Q ss_pred             hhHHHHHHHHHHhcCChhHHHHHhccCCC---CChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHHh
Q 036068            6 VISWTAIVSRYINRGQVDIARQCFDQMPE---RDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTAR   82 (178)
Q Consensus         6 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~   82 (178)
                      ...|..+...+...|++++|...|++..+   .+...|..+...+...|++++|...|++..+.. +.+...+..+..++
T Consensus       365 ~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~~~~~la~~~  443 (615)
T TIGR00990       365 TQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFIFSHIQLGVTQ  443 (615)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCHHHHHHHHHHH
Confidence            44667777777778888888887776542   256677777777777788888888887776654 22455566666777


Q ss_pred             ccccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHhcCChhhhc----------cch-h-------hHHHHHHHHHhcC
Q 036068           83 ANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ----------KDK-F-------SWTTMIVGLAISG  144 (178)
Q Consensus        83 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~----------~~~-~-------~~~~li~~~~~~~  144 (178)
                      .+.|++++|...++...+.. +.++.+++.+-..+...|++++|.          |+. .       .++.....+...|
T Consensus       444 ~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~  522 (615)
T TIGR00990       444 YKEGSIASSMATFRRCKKNF-PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQ  522 (615)
T ss_pred             HHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhh
Confidence            77777777777777776653 234666777777777777777775          110 1       1111222233457


Q ss_pred             ChhHHHHHHHHHHHc
Q 036068          145 NGDKALDMFSQMLRA  159 (178)
Q Consensus       145 ~~~~a~~~~~~m~~~  159 (178)
                      ++++|.+++++.++.
T Consensus       523 ~~~eA~~~~~kAl~l  537 (615)
T TIGR00990       523 DFIEAENLCEKALII  537 (615)
T ss_pred             hHHHHHHHHHHHHhc
Confidence            777777777776553

>PF13812 PPR_3: Pentatricopeptide repeat domain

Probab=98.93  E-value=2.5e-09  Score=51.84  Aligned_cols=34  Identities=26%  Similarity=0.554  Sum_probs=32.4

Q ss_pred             hhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC
Q 036068          130 KFSWTTMIVGLAISGNGDKALDMFSQMLRASIKP  163 (178)
Q Consensus       130 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p  163 (178)
                      +.+||.+|.+|++.|+++.|.++|++|++.|++|
T Consensus         1 v~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P   34 (34)
T PF13812_consen    1 VHTYNALLRACAKAGDPDAALQLFDEMKEQGVKP   34 (34)
T ss_pred             CcHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence            3689999999999999999999999999999988

>PRK12370 invasion protein regulator; Provisional

Probab=98.89  E-value=2.5e-07  Score=73.09  Aligned_cols=120  Identities=8%  Similarity=-0.046  Sum_probs=52.9

Q ss_pred             hhHHHHHHHHHHhcCChhHHHHHhccCCC--C-ChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcH-HHHHHHHHH
Q 036068            6 VISWTAIVSRYINRGQVDIARQCFDQMPE--R-DYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDE-FTIVSILTA   81 (178)
Q Consensus         6 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~-~~~~~ll~~   81 (178)
                      ...|..+-..+...|++++|...|++..+  | +...+..+-..+...|++++|...+++..+..  |+. ..+..+...
T Consensus       338 ~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~--P~~~~~~~~~~~~  415 (553)
T PRK12370        338 PQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLD--PTRAAAGITKLWI  415 (553)
T ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCChhhHHHHHHH
Confidence            33444444444555555555555554332  2 23344444445555555555555555544432  221 111222223


Q ss_pred             hccccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHhcCChhhhc
Q 036068           82 RANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ  127 (178)
Q Consensus        82 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~  127 (178)
                      +...|++++|...++...+...+-++..+..+-..|...|+.++|.
T Consensus       416 ~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~  461 (553)
T PRK12370        416 TYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELAR  461 (553)
T ss_pred             HHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHH
Confidence            3334455555555554444332222333444444455555555554

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=98.88  E-value=2.2e-07  Score=77.33  Aligned_cols=105  Identities=8%  Similarity=-0.139  Sum_probs=47.1

Q ss_pred             CChhHHHHHHHHhHhCCCCCcHHHHHHHHHHhccccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHhcCChhhhc---
Q 036068           51 NRFREALTLFQEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ---  127 (178)
Q Consensus        51 ~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~---  127 (178)
                      |++++|.+.+++..+.  .|+...+..+..++.+.|++++|...++...+..+. +...++.+-..+...|+.++|.   
T Consensus       590 Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd-~~~a~~nLG~aL~~~G~~eeAi~~l  666 (987)
T PRK09782        590 GQPELALNDLTRSLNI--APSANAYVARATIYRQRHNVPAAVSDLRAALELEPN-NSNYQAALGYALWDSGDIAQSREML  666 (987)
T ss_pred             CCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHH
Confidence            4444444444444332  233444444444444444444444444444444321 2334444444444444444443   


Q ss_pred             -------c-chhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 036068          128 -------K-DKFSWTTMIVGLAISGNGDKALDMFSQMLR  158 (178)
Q Consensus       128 -------~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~  158 (178)
                             | +...+..+...+...|++++|...|++..+
T Consensus       667 ~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~  705 (987)
T PRK09782        667 ERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVID  705 (987)
T ss_pred             HHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence                   1 344444555555555555555555555443

>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]

Probab=98.86  E-value=1.7e-08  Score=80.47  Aligned_cols=157  Identities=15%  Similarity=0.120  Sum_probs=112.5

Q ss_pred             CcchhHHHHHHHHHHhcCChhHHHHHhccCCCC----ChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHH
Q 036068            3 NKDVISWTAIVSRYINRGQVDIARQCFDQMPER----DYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSI   78 (178)
Q Consensus         3 ~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l   78 (178)
                      .|+-.||.++|..|+..|+++.|- +|..|+-+    +...|+.++.+....++.+.+.           .|.+.||+.+
T Consensus        22 ~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-----------ep~aDtyt~L   89 (1088)
T KOG4318|consen   22 LPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-----------EPLADTYTNL   89 (1088)
T ss_pred             CCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-----------CCchhHHHHH
Confidence            477789999999999999999988 88877643    6678888988888888877665           6889999999


Q ss_pred             HHHhccccchhh---HHHHHHHHH----HhCc-----------------ccchHHHHHHHHHHHhcCChhhhc-------
Q 036068           79 LTARANLRALDL---GEWIKTYID----KNKV-----------------KNDIFAGNALIDMYCICADVEKAQ-------  127 (178)
Q Consensus        79 l~~~~~~~~~~~---a~~~~~~m~----~~~~-----------------~~~~~~~~~ll~~~~~~~~~~~a~-------  127 (178)
                      +.+|.+.||...   +++.+..+.    ..|+                 -|+..  | .+....-.|.++.+.       
T Consensus        90 l~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~--n-~illlv~eglwaqllkll~~~P  166 (1088)
T KOG4318|consen   90 LKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAE--N-AILLLVLEGLWAQLLKLLAKVP  166 (1088)
T ss_pred             HHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHH--H-HHHHHHHHHHHHHHHHHHhhCC
Confidence            999999998654   333222221    1221                 11111  0 011111111111111       


Q ss_pred             -----------------------------------cchhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhHHHHHH
Q 036068          128 -----------------------------------KDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVL  172 (178)
Q Consensus       128 -----------------------------------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li  172 (178)
                                                         ++..+|.+++..-...|+.+.|..++.+|.+.|++.+.+-|..||
T Consensus       167 vsa~~~p~~vfLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~HyFwpLl  246 (1088)
T KOG4318|consen  167 VSAWNAPFQVFLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHYFWPLL  246 (1088)
T ss_pred             cccccchHHHHHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccccchhhh
Confidence                                               689999999999999999999999999999999998888887777


Q ss_pred             hh
Q 036068          173 SA  174 (178)
Q Consensus       173 ~a  174 (178)
                      -+
T Consensus       247 ~g  248 (1088)
T KOG4318|consen  247 LG  248 (1088)
T ss_pred             hc
Confidence            54

>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif)

Probab=98.84  E-value=5.3e-09  Score=50.91  Aligned_cols=33  Identities=39%  Similarity=0.635  Sum_probs=27.7

Q ss_pred             HHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCc
Q 036068           39 LWTAMIDGYLRVNRFREALTLFQEMQTSNIMGD   71 (178)
Q Consensus        39 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~   71 (178)
                      +||++|.+|++.|++++|.++|++|.+.|+.||
T Consensus         2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~   34 (35)
T TIGR00756         2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD   34 (35)
T ss_pred             cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence            688888888888888888888888888888876

This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=98.81  E-value=9.9e-07  Score=67.02  Aligned_cols=158  Identities=18%  Similarity=0.159  Sum_probs=91.0

Q ss_pred             HHHHHhcCChhHHHHHhccCCC--C-ChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCC-------------------
Q 036068           13 VSRYINRGQVDIARQCFDQMPE--R-DYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMG-------------------   70 (178)
Q Consensus        13 i~~~~~~~~~~~a~~~~~~m~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~-------------------   70 (178)
                      ...+...|++++|...++++.+  | +......+...|.+.|++++|.+++.++.+.+..+                   
T Consensus       160 a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~  239 (398)
T PRK10747        160 VRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQA  239 (398)
T ss_pred             HHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH
Confidence            4455556666666666665543  2 45555566666666666666666666655443221                   


Q ss_pred             ----------------------cHHHHHHHHHHhccccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHhcCChhhhc-
Q 036068           71 ----------------------DEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ-  127 (178)
Q Consensus        71 ----------------------~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~-  127 (178)
                                            +......+..++.+.|+.++|..++....+..  +++.  -.++.+....++.+++. 
T Consensus       240 ~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~~--~~~~--l~~l~~~l~~~~~~~al~  315 (398)
T PRK10747        240 MADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKRQ--YDER--LVLLIPRLKTNNPEQLEK  315 (398)
T ss_pred             HHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCHH--HHHHHhhccCCChHHHHH
Confidence                                  11122233444445555555555555554432  2221  11222223334444443 


Q ss_pred             ---------c-chhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhHHHHHHhhhh
Q 036068          128 ---------K-DKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACT  176 (178)
Q Consensus       128 ---------~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~a~~  176 (178)
                               | |.....++-..+.+.+++++|.+.|++..+.  .|+..++..+-.++.
T Consensus       316 ~~e~~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~  372 (398)
T PRK10747        316 VLRQQIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALD  372 (398)
T ss_pred             HHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHH
Confidence                     3 5556778889999999999999999999875  699888777666553

>PRK12370 invasion protein regulator; Provisional

Probab=98.81  E-value=8.9e-07  Score=70.03  Aligned_cols=148  Identities=9%  Similarity=-0.073  Sum_probs=112.9

Q ss_pred             CChhHHHHHhccCCC--C-ChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHHhccccchhhHHHHHH
Q 036068           20 GQVDIARQCFDQMPE--R-DYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKT   96 (178)
Q Consensus        20 ~~~~~a~~~~~~m~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~   96 (178)
                      +++++|...+++..+  | +...+..+-..+...|++++|...|++..+.+ +.+...+..+-.++...|++++|...++
T Consensus       318 ~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~  396 (553)
T PRK12370        318 NAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTIN  396 (553)
T ss_pred             hHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence            457889999988764  3 77788888888889999999999999998875 3346678888889999999999999999


Q ss_pred             HHHHhCcccchHHHHHHHHHHHhcCChhhhc-----------c-chhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC
Q 036068           97 YIDKNKVKNDIFAGNALIDMYCICADVEKAQ-----------K-DKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPD  164 (178)
Q Consensus        97 ~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~-----------~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~  164 (178)
                      ...+..+.. +..+..+...+...|++++|.           | +...+..+...+...|+.++|...+.++...  .|+
T Consensus       397 ~Al~l~P~~-~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~--~~~  473 (553)
T PRK12370        397 ECLKLDPTR-AAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ--EIT  473 (553)
T ss_pred             HHHhcCCCC-hhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc--cch
Confidence            998876543 333344455567788888875           2 2334667778888999999999999997654  455


Q ss_pred             hhHHHHH
Q 036068          165 EVAYVGV  171 (178)
Q Consensus       165 ~~t~~~l  171 (178)
                      ..+....
T Consensus       474 ~~~~~~~  480 (553)
T PRK12370        474 GLIAVNL  480 (553)
T ss_pred             hHHHHHH
Confidence            4444433

>PF13812 PPR_3: Pentatricopeptide repeat domain

Probab=98.80  E-value=1e-08  Score=49.63  Aligned_cols=33  Identities=21%  Similarity=0.354  Sum_probs=24.8

Q ss_pred             hHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCC
Q 036068           38 VLWTAMIDGYLRVNRFREALTLFQEMQTSNIMG   70 (178)
Q Consensus        38 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~   70 (178)
                      .+|+.+|.+|++.|+++.|.++|++|.+.|++|
T Consensus         2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P   34 (34)
T PF13812_consen    2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP   34 (34)
T ss_pred             cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence            567777777777777777777777777777766

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=98.78  E-value=1.3e-07  Score=73.28  Aligned_cols=162  Identities=15%  Similarity=0.115  Sum_probs=132.0

Q ss_pred             cchhHHHHHHHHHHhcCChhHHHHHhccCCC--C-ChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHH---H
Q 036068            4 KDVISWTAIVSRYINRGQVDIARQCFDQMPE--R-DYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIV---S   77 (178)
Q Consensus         4 p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~---~   77 (178)
                      -.+.+|..+-.+|+-+++.+.|+..|++..+  | ...+|+.+-+-+....++|+|...|+.-+..    |...|+   -
T Consensus       419 ~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~----~~rhYnAwYG  494 (638)
T KOG1126|consen  419 NSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGV----DPRHYNAWYG  494 (638)
T ss_pred             CCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcC----CchhhHHHHh
Confidence            4678999999999999999999999998875  3 6678999989999999999999999886554    444555   4


Q ss_pred             HHHHhccccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHhcCChhhhc-----------cchhhHHHHHHHHHhcCCh
Q 036068           78 ILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ-----------KDKFSWTTMIVGLAISGNG  146 (178)
Q Consensus        78 ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~-----------~~~~~~~~li~~~~~~~~~  146 (178)
                      +-..|.+.++++.|+-.|+...+.++. +......+...+-+.|+.++|+           .|+.+--.-...+...++.
T Consensus       495 lG~vy~Kqek~e~Ae~~fqkA~~INP~-nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~~~~~  573 (638)
T KOG1126|consen  495 LGTVYLKQEKLEFAEFHFQKAVEINPS-NSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASILFSLGRY  573 (638)
T ss_pred             hhhheeccchhhHHHHHHHhhhcCCcc-chhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHhhcch
Confidence            556789999999999999999887754 5666777777888999999987           4666666667777888999


Q ss_pred             hHHHHHHHHHHHcCCCCChhHHHHHH
Q 036068          147 DKALDMFSQMLRASIKPDEVAYVGVL  172 (178)
Q Consensus       147 ~~a~~~~~~m~~~g~~p~~~t~~~li  172 (178)
                      ++|++.++++++.  .|+..+...++
T Consensus       574 ~eal~~LEeLk~~--vP~es~v~~ll  597 (638)
T KOG1126|consen  574 VEALQELEELKEL--VPQESSVFALL  597 (638)
T ss_pred             HHHHHHHHHHHHh--CcchHHHHHHH
Confidence            9999999999874  67776655554

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=98.77  E-value=2.2e-06  Score=71.57  Aligned_cols=157  Identities=13%  Similarity=-0.001  Sum_probs=111.9

Q ss_pred             cchhHHHHHHHHHHhcCChhHHHHHhccCCC--CChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHH
Q 036068            4 KDVISWTAIVSRYINRGQVDIARQCFDQMPE--RDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTA   81 (178)
Q Consensus         4 p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~   81 (178)
                      |+......+...+.+.|++++|...|+++..  ++...+..+...+.+.|+.++|.+.+++..+.+ +.+...+..+...
T Consensus       507 Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~La~~  585 (987)
T PRK09782        507 PDAWQHRAVAYQAYQVEDYATALAAWQKISLHDMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG-LGDNALYWWLHAQ  585 (987)
T ss_pred             CchHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CccHHHHHHHHHH
Confidence            4433333334444678888888888886653  344455666677788888888888888887764 2233333334444


Q ss_pred             hccccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHhcCChhhhc----------c-chhhHHHHHHHHHhcCChhHHH
Q 036068           82 RANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ----------K-DKFSWTTMIVGLAISGNGDKAL  150 (178)
Q Consensus        82 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~----------~-~~~~~~~li~~~~~~~~~~~a~  150 (178)
                      ..+.|++++|...++...+..+  +...+..+-..+.+.|+.++|.          | +...++.+...+...|++++|.
T Consensus       586 l~~~Gr~~eAl~~~~~AL~l~P--~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi  663 (987)
T PRK09782        586 RYIPGQPELALNDLTRSLNIAP--SANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSR  663 (987)
T ss_pred             HHhCCCHHHHHHHHHHHHHhCC--CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHH
Confidence            5566899999999988887654  5777888888899999999887          3 5667777778888899999999


Q ss_pred             HHHHHHHHcCCCCCh
Q 036068          151 DMFSQMLRASIKPDE  165 (178)
Q Consensus       151 ~~~~~m~~~g~~p~~  165 (178)
                      +.|++..+.  .|+.
T Consensus       664 ~~l~~AL~l--~P~~  676 (987)
T PRK09782        664 EMLERAHKG--LPDD  676 (987)
T ss_pred             HHHHHHHHh--CCCC
Confidence            999988874  4654

>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends

Probab=98.76  E-value=1.6e-07  Score=57.37  Aligned_cols=88  Identities=11%  Similarity=0.146  Sum_probs=65.2

Q ss_pred             HHHHHHhccccchhhHHHHHHHHHHhCc-ccchHHHHHHHHHHHhcCChhhhccchhhHHHHHHHHHhcCChhHHHHHHH
Q 036068           76 VSILTARANLRALDLGEWIKTYIDKNKV-KNDIFAGNALIDMYCICADVEKAQKDKFSWTTMIVGLAISGNGDKALDMFS  154 (178)
Q Consensus        76 ~~ll~~~~~~~~~~~a~~~~~~m~~~~~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~li~~~~~~~~~~~a~~~~~  154 (178)
                      ..-|..|...+++.....+|+.+++.|+ .|+..+|+.++.+.++...=..               .-.+++-+.+.+|+
T Consensus        29 i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~---------------~ie~kl~~LLtvYq   93 (120)
T PF08579_consen   29 IDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSE---------------DIENKLTNLLTVYQ   93 (120)
T ss_pred             HHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccch---------------hHHHHHHHHHHHHH
Confidence            3445555555888888888888888888 7888888888877766542211               11234447888999


Q ss_pred             HHHHcCCCCChhHHHHHHhhhhcC
Q 036068          155 QMLRASIKPDEVAYVGVLSACTHN  178 (178)
Q Consensus       155 ~m~~~g~~p~~~t~~~li~a~~~~  178 (178)
                      .|+..+++|+..||+.++.++.++
T Consensus        94 DiL~~~lKP~~etYnivl~~Llkg  117 (120)
T PF08579_consen   94 DILSNKLKPNDETYNIVLGSLLKG  117 (120)
T ss_pred             HHHHhccCCcHHHHHHHHHHHHHh
Confidence            999999999999999999987653

Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].

>TIGR00540 hemY_coli hemY protein

Probab=98.76  E-value=1.2e-06  Score=66.73  Aligned_cols=164  Identities=13%  Similarity=0.049  Sum_probs=88.4

Q ss_pred             HHHHHHhcCChhHHHHHhccCCC--C-ChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCC------------------
Q 036068           12 IVSRYINRGQVDIARQCFDQMPE--R-DYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMG------------------   70 (178)
Q Consensus        12 li~~~~~~~~~~~a~~~~~~m~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~------------------   70 (178)
                      ....+...|+++.|.+.++++.+  | +......+...+.+.|++++|.+.+.++.+.++.+                  
T Consensus       159 ~a~l~l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~  238 (409)
T TIGR00540       159 RTRILLAQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDE  238 (409)
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHH
Confidence            35556666777777666666653  2 55566666667777777777766666666543221                  


Q ss_pred             -----------------------cHHHHHHHHHHhccccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHh--cCChhh
Q 036068           71 -----------------------DEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCI--CADVEK  125 (178)
Q Consensus        71 -----------------------~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~--~~~~~~  125 (178)
                                             +...+..+...+.+.|+.++|.++++...+..+......+. ++..+..  .++.+.
T Consensus       239 ~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~-~l~~~~~l~~~~~~~  317 (409)
T TIGR00540       239 AMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLP-LCLPIPRLKPEDNEK  317 (409)
T ss_pred             HHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhH-HHHHhhhcCCCChHH
Confidence                                   22222233334444455555555555555543322111111 2222221  222222


Q ss_pred             hc----------cc-h--hhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhHHHHHHhhhh
Q 036068          126 AQ----------KD-K--FSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACT  176 (178)
Q Consensus       126 a~----------~~-~--~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~a~~  176 (178)
                      +.          |+ .  ....++-..+.+.|++++|.+.|++.......|+...+..+-..+.
T Consensus       318 ~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~  381 (409)
T TIGR00540       318 LEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFD  381 (409)
T ss_pred             HHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHH
Confidence            22          33 3  4455777788888888888888885444344688877776655443

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.73  E-value=8.1e-07  Score=66.84  Aligned_cols=155  Identities=19%  Similarity=0.222  Sum_probs=101.5

Q ss_pred             cCChhHHHHHhccCCCCChhHHHHHHH---HHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHHhccccchhhHHHHH
Q 036068           19 RGQVDIARQCFDQMPERDYVLWTAMID---GYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANLRALDLGEWIK   95 (178)
Q Consensus        19 ~~~~~~a~~~~~~m~~~~~~~~~~li~---~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~   95 (178)
                      .|++++|.+++++....|...-..|..   .+...|+.++|+++|-++..- +.-++.....+.+.|-...+..+|.+++
T Consensus       503 ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~  581 (840)
T KOG2003|consen  503 NGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELL  581 (840)
T ss_pred             cCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHH
Confidence            677888888888776655444333322   345567778887777665432 1224455555555565555666666555


Q ss_pred             HHHHHhCcccchHHHHHHHHHHHhcCChhhhc--------------------------------------------cchh
Q 036068           96 TYIDKNKVKNDIFAGNALIDMYCICADVEKAQ--------------------------------------------KDKF  131 (178)
Q Consensus        96 ~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~--------------------------------------------~~~~  131 (178)
                      .+.... ++.|+.+.+.|-+.|-+.|+-..|.                                            |+..
T Consensus       582 ~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~  660 (840)
T KOG2003|consen  582 MQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQS  660 (840)
T ss_pred             HHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHH
Confidence            443322 3445666666666666666665554                                            8999


Q ss_pred             hHHHHHHHHH-hcCChhHHHHHHHHHHHcCCCCChhHHHHHHhhhh
Q 036068          132 SWTTMIVGLA-ISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACT  176 (178)
Q Consensus       132 ~~~~li~~~~-~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~a~~  176 (178)
                      -|..||..|. +.|++.+|+++|++..+ .++-|......|++.|.
T Consensus       661 kwqlmiasc~rrsgnyqka~d~yk~~hr-kfpedldclkflvri~~  705 (840)
T KOG2003|consen  661 KWQLMIASCFRRSGNYQKAFDLYKDIHR-KFPEDLDCLKFLVRIAG  705 (840)
T ss_pred             HHHHHHHHHHHhcccHHHHHHHHHHHHH-hCccchHHHHHHHHHhc
Confidence            9999996665 57999999999999876 57778888888887664

>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat

Probab=98.73  E-value=2e-08  Score=47.51  Aligned_cols=31  Identities=26%  Similarity=0.531  Sum_probs=29.2

Q ss_pred             hhHHHHHHHHHhcCChhHHHHHHHHHHHcCC
Q 036068          131 FSWTTMIVGLAISGNGDKALDMFSQMLRASI  161 (178)
Q Consensus       131 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~  161 (178)
                      ++||.+|.+|++.|++++|.++|++|.+.|+
T Consensus         1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~   31 (31)
T PF01535_consen    1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI   31 (31)
T ss_pred             CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence            4899999999999999999999999999875

Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.

>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends

Probab=98.73  E-value=3e-07  Score=56.18  Aligned_cols=81  Identities=15%  Similarity=0.051  Sum_probs=69.1

Q ss_pred             HHHHHHHHhhcCChhHHHHHHHHhHhCCC-CCcHHHHHHHHHHhcccc--------chhhHHHHHHHHHHhCcccchHHH
Q 036068           40 WTAMIDGYLRVNRFREALTLFQEMQTSNI-MGDEFTIVSILTARANLR--------ALDLGEWIKTYIDKNKVKNDIFAG  110 (178)
Q Consensus        40 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~-~~~~~~~~~ll~~~~~~~--------~~~~a~~~~~~m~~~~~~~~~~~~  110 (178)
                      -..-|..+...+++.....+|+.+++.|+ .|+..+|+.++++.++..        ++-+...+|+.|...+++|+..+|
T Consensus        28 ~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etY  107 (120)
T PF08579_consen   28 QIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETY  107 (120)
T ss_pred             HHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHH
Confidence            34466667777999999999999999999 999999999999987653        234667788999999999999999


Q ss_pred             HHHHHHHHhc
Q 036068          111 NALIDMYCIC  120 (178)
Q Consensus       111 ~~ll~~~~~~  120 (178)
                      +.++..+.+.
T Consensus       108 nivl~~Llkg  117 (120)
T PF08579_consen  108 NIVLGSLLKG  117 (120)
T ss_pred             HHHHHHHHHh
Confidence            9999988764

Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].

>PRK11189 lipoprotein NlpI; Provisional

Probab=98.70  E-value=5.2e-06  Score=60.65  Aligned_cols=159  Identities=9%  Similarity=-0.023  Sum_probs=82.8

Q ss_pred             chhHHHHHHHHHHhcCChhHHHHHhccCCC--C-ChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHH
Q 036068            5 DVISWTAIVSRYINRGQVDIARQCFDQMPE--R-DYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTA   81 (178)
Q Consensus         5 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~   81 (178)
                      ++..|+.+-..+...|++++|.+.|++..+  | +...|..+...+...|++++|.+.|++..+..  |+..........
T Consensus        97 ~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~--P~~~~~~~~~~l  174 (296)
T PRK11189         97 MADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDD--PNDPYRALWLYL  174 (296)
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHH
Confidence            345555555666666666666665555432  2 34455555555555666666666666655432  322211112222


Q ss_pred             hccccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHhcCChhhh--c---------------cchhhHHHHHHHHHhcC
Q 036068           82 RANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKA--Q---------------KDKFSWTTMIVGLAISG  144 (178)
Q Consensus        82 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a--~---------------~~~~~~~~li~~~~~~~  144 (178)
                      ....+++++|...++...... .++...+ .+..  ...|+...+  .               .....|..+-..+.+.|
T Consensus       175 ~~~~~~~~~A~~~l~~~~~~~-~~~~~~~-~~~~--~~lg~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g  250 (296)
T PRK11189        175 AESKLDPKQAKENLKQRYEKL-DKEQWGW-NIVE--FYLGKISEETLMERLKAGATDNTELAERLCETYFYLAKYYLSLG  250 (296)
T ss_pred             HHccCCHHHHHHHHHHHHhhC-CccccHH-HHHH--HHccCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCC
Confidence            233445666666664433221 1221111 1221  122332211  1               13357888889999999


Q ss_pred             ChhHHHHHHHHHHHcCCCCChhHHHH
Q 036068          145 NGDKALDMFSQMLRASIKPDEVAYVG  170 (178)
Q Consensus       145 ~~~~a~~~~~~m~~~g~~p~~~t~~~  170 (178)
                      ++++|...|++..+.+ .||..-+..
T Consensus       251 ~~~~A~~~~~~Al~~~-~~~~~e~~~  275 (296)
T PRK11189        251 DLDEAAALFKLALANN-VYNFVEHRY  275 (296)
T ss_pred             CHHHHHHHHHHHHHhC-CchHHHHHH
Confidence            9999999999999764 345544433

>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]

Probab=98.68  E-value=2.8e-07  Score=73.79  Aligned_cols=162  Identities=9%  Similarity=0.033  Sum_probs=104.6

Q ss_pred             hhHHHHHHHHHHhcCChhHHHHHhccCCCCChhHHHHHHHHHhhcCChhH---HHHHHHHhH----hCCC----------
Q 036068            6 VISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFRE---ALTLFQEMQ----TSNI----------   68 (178)
Q Consensus         6 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~---a~~~~~~m~----~~~~----------   68 (178)
                      -.+++.++.+..++++.+.+.       +|...+|..|+.+|...||...   +.+.+..+.    ..|+          
T Consensus        59 e~vf~~lv~sh~~And~Enpk-------ep~aDtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k  131 (1088)
T KOG4318|consen   59 EGVFRGLVASHKEANDAENPK-------EPLADTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMK  131 (1088)
T ss_pred             chhHHHHHhcccccccccCCC-------CCchhHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhh
Confidence            346788888888888877765       7899999999999999998654   333222211    1222          


Q ss_pred             -------CCcHHH----------HHHHHHHhcc------cc-----------chhhHHHHHHHHHHhCcccchHHHHHHH
Q 036068           69 -------MGDEFT----------IVSILTARAN------LR-----------ALDLGEWIKTYIDKNKVKNDIFAGNALI  114 (178)
Q Consensus        69 -------~~~~~~----------~~~ll~~~~~------~~-----------~~~~a~~~~~~m~~~~~~~~~~~~~~ll  114 (178)
                             -||..+          |..+++...+      .+           +....+++.+...+..--|++.++.+++
T Consensus       132 ~~c~p~~lpda~n~illlv~eglwaqllkll~~~Pvsa~~~p~~vfLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l  211 (1088)
T KOG4318|consen  132 IHCCPHSLPDAENAILLLVLEGLWAQLLKLLAKVPVSAWNAPFQVFLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVL  211 (1088)
T ss_pred             cccCcccchhHHHHHHHHHHHHHHHHHHHHHhhCCcccccchHHHHHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHH
Confidence                   233222          1111111100      00           0111222222222222248999999999


Q ss_pred             HHHHhcCChhhhc------------cchhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhHHHHHHhhhhc
Q 036068          115 DMYCICADVEKAQ------------KDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACTH  177 (178)
Q Consensus       115 ~~~~~~~~~~~a~------------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~a~~~  177 (178)
                      ..-...|+.+.|.            -+.+-|-.|+.+   .++...+..+.+-|.+.|+.|+++|+.--+-.+.+
T Consensus       212 ~~alaag~~d~Ak~ll~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~  283 (1088)
T KOG4318|consen  212 KRALAAGDVDGAKNLLYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLS  283 (1088)
T ss_pred             HHHHhcCchhhHHHHHHHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhc
Confidence            9999999999987            245555566655   88888899999999999999999999877766554

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.63  E-value=2e-06  Score=62.46  Aligned_cols=144  Identities=16%  Similarity=0.094  Sum_probs=109.0

Q ss_pred             HHHHHHHHhcCChhHHHHHhccCCCCChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHHh----ccc
Q 036068           10 TAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTAR----ANL   85 (178)
Q Consensus        10 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~----~~~   85 (178)
                      -.....+...|++++|++++++-  .+.......+..|.+.++++.|.+.++.|.+.+  .| .+...+..++    ...
T Consensus       106 ~~~A~i~~~~~~~~~AL~~l~~~--~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~--eD-~~l~qLa~awv~l~~g~  180 (290)
T PF04733_consen  106 LLAATILFHEGDYEEALKLLHKG--GSLELLALAVQILLKMNRPDLAEKELKNMQQID--ED-SILTQLAEAWVNLATGG  180 (290)
T ss_dssp             HHHHHHHCCCCHHHHHHCCCTTT--TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCS--CC-HHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHcCCHHHHHHHHHcc--CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--Cc-HHHHHHHHHHHHHHhCc
Confidence            33345566789999999999876  567788889999999999999999999998763  33 4444454444    334


Q ss_pred             cchhhHHHHHHHHHHhCcccchHHHHHHHHHHHhcCChhhhc-----------cchhhHHHHHHHHHhcCCh-hHHHHHH
Q 036068           86 RALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ-----------KDKFSWTTMIVGLAISGNG-DKALDMF  153 (178)
Q Consensus        86 ~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~-----------~~~~~~~~li~~~~~~~~~-~~a~~~~  153 (178)
                      +.+.+|..+|+++.+. +.+++.+.+.+.-++...|++++|.           .+..+.-.+|......|+. +.+.+++
T Consensus       181 e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l  259 (290)
T PF04733_consen  181 EKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYL  259 (290)
T ss_dssp             TCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHH
T ss_pred             hhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHH
Confidence            5799999999998765 5678899999999999999999998           3566666777777788887 7788899


Q ss_pred             HHHHHc
Q 036068          154 SQMLRA  159 (178)
Q Consensus       154 ~~m~~~  159 (178)
                      .++...
T Consensus       260 ~qL~~~  265 (290)
T PF04733_consen  260 SQLKQS  265 (290)
T ss_dssp             HHCHHH
T ss_pred             HHHHHh
Confidence            988864

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=98.63  E-value=5.5e-06  Score=70.87  Aligned_cols=150  Identities=14%  Similarity=0.144  Sum_probs=120.6

Q ss_pred             HHHHHHHhcCChhHHHHHhccCCCCChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHHhccccchhh
Q 036068           11 AIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANLRALDL   90 (178)
Q Consensus        11 ~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~   90 (178)
                      .....+...|++++|.++++.-+ .+...+..+-..+.+.|+.++|.+.|++..+.. +.+...+..+...+...|++++
T Consensus       578 ~~a~~l~~~G~~~eA~~~l~~~p-~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~-P~~~~a~~~la~~~~~~g~~~e  655 (1157)
T PRK11447        578 ETANRLRDSGKEAEAEALLRQQP-PSTRIDLTLADWAQQRGDYAAARAAYQRVLTRE-PGNADARLGLIEVDIAQGDLAA  655 (1157)
T ss_pred             HHHHHHHHCCCHHHHHHHHHhCC-CCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHH
Confidence            45677889999999999999432 356677788899999999999999999998874 3467888999999999999999


Q ss_pred             HHHHHHHHHHhCcccchHHHHHHHHHHHhcCChhhhc----------cc-h------hhHHHHHHHHHhcCChhHHHHHH
Q 036068           91 GEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ----------KD-K------FSWTTMIVGLAISGNGDKALDMF  153 (178)
Q Consensus        91 a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~----------~~-~------~~~~~li~~~~~~~~~~~a~~~~  153 (178)
                      |.+.++.+.+... .+...+..+...+.+.|++++|.          ++ .      ..+..+...+...|++++|.+.|
T Consensus       656 A~~~l~~ll~~~p-~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y  734 (1157)
T PRK11447        656 ARAQLAKLPATAN-DSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETY  734 (1157)
T ss_pred             HHHHHHHHhccCC-CChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            9999998877543 34566777788899999999987          11 1      34555677888999999999999


Q ss_pred             HHHHH-cCCCC
Q 036068          154 SQMLR-ASIKP  163 (178)
Q Consensus       154 ~~m~~-~g~~p  163 (178)
                      ++.+. .|+.|
T Consensus       735 ~~Al~~~~~~~  745 (1157)
T PRK11447        735 KDAMVASGITP  745 (1157)
T ss_pred             HHHHhhcCCCC
Confidence            99875 34543

>PRK14574 hmsH outer membrane protein; Provisional

Probab=98.60  E-value=9.5e-06  Score=66.63  Aligned_cols=159  Identities=12%  Similarity=-0.041  Sum_probs=116.2

Q ss_pred             HHHHhcCChhHHHHHhccCCC--CCh-hHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHHhccccchhh
Q 036068           14 SRYINRGQVDIARQCFDQMPE--RDY-VLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANLRALDL   90 (178)
Q Consensus        14 ~~~~~~~~~~~a~~~~~~m~~--~~~-~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~   90 (178)
                      -..++.|+++.|.+.|++..+  |+. ....-++..+...|+.++|+..+++..... .........+...+...|++++
T Consensus        42 ii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~-n~~~~~llalA~ly~~~gdyd~  120 (822)
T PRK14574         42 IIRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSM-NISSRGLASAARAYRNEKRWDQ  120 (822)
T ss_pred             HHHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCC-CCCHHHHHHHHHHHHHcCCHHH
Confidence            345689999999999999875  432 123388888889999999999999987221 2234444455678899999999


Q ss_pred             HHHHHHHHHHhCcccchHHHHHHHHHHHhcCChhhhc----------cchhhHHHHHHHHHhcCChhHHHHHHHHHHHcC
Q 036068           91 GEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ----------KDKFSWTTMIVGLAISGNGDKALDMFSQMLRAS  160 (178)
Q Consensus        91 a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~----------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g  160 (178)
                      |.++++.+.+..+. ++..+..+...|...++.++|.          |+...+-.++..+...++..+|++.++++.+. 
T Consensus       121 Aiely~kaL~~dP~-n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~-  198 (822)
T PRK14574        121 ALALWQSSLKKDPT-NPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNYMTLSYLNRATDRNYDALQASSEAVRL-  198 (822)
T ss_pred             HHHHHHHHHhhCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHHHHHHHHHHhcchHHHHHHHHHHHHHh-
Confidence            99999999998755 4777788899999999999998          55555544444444466666699999999986 


Q ss_pred             CCCC-hhHHHHHHhhhh
Q 036068          161 IKPD-EVAYVGVLSACT  176 (178)
Q Consensus       161 ~~p~-~~t~~~li~a~~  176 (178)
                       .|+ ...+..++.+.+
T Consensus       199 -~P~n~e~~~~~~~~l~  214 (822)
T PRK14574        199 -APTSEEVLKNHLEILQ  214 (822)
T ss_pred             -CCCCHHHHHHHHHHHH
Confidence             465 444444444443

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=98.58  E-value=1.5e-05  Score=58.84  Aligned_cols=171  Identities=16%  Similarity=0.169  Sum_probs=108.0

Q ss_pred             CcchhHHHHHHHHHHhcCChhHHHHHhccCC---CCChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcH-------
Q 036068            3 NKDVISWTAIVSRYINRGQVDIARQCFDQMP---ERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDE-------   72 (178)
Q Consensus         3 ~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~-------   72 (178)
                      .++..++-+..+.....|+++.|.+-+++..   ..++........+|.+.|++....+++.+|.+.|+--+.       
T Consensus       150 ~~~l~v~ltrarlll~~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~  229 (400)
T COG3071         150 DDTLAVELTRARLLLNRRDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQ  229 (400)
T ss_pred             CchHHHHHHHHHHHHhCCCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHH
Confidence            4556666677777777777777777666544   347777888888888888888888888888776654332       


Q ss_pred             HHHHHHHHHhccccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHhcCChhhhc-------------------------
Q 036068           73 FTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ-------------------------  127 (178)
Q Consensus        73 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~-------------------------  127 (178)
                      .+|..+++=....+..+.-...++..-.. ...++..--.++.-+..+|+.++|.                         
T Consensus       230 ~a~~glL~q~~~~~~~~gL~~~W~~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~~~~~~l~~~  308 (400)
T COG3071         230 QAWEGLLQQARDDNGSEGLKTWWKNQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLCRLIPRLRPG  308 (400)
T ss_pred             HHHHHHHHHHhccccchHHHHHHHhccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHHHHHhhcCCC
Confidence            34555555443333333333333332221 1223334444444445555555544                         


Q ss_pred             -----------------cchhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhHHHHHHhhhh
Q 036068          128 -----------------KDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACT  176 (178)
Q Consensus       128 -----------------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~a~~  176 (178)
                                       .+.-.+.+|-..|.+.+.|.+|.+.|+...+  ..|+.++|..+-+++.
T Consensus       309 d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~--~~~s~~~~~~la~~~~  372 (400)
T COG3071         309 DPEPLIKAAEKWLKQHPEDPLLLSTLGRLALKNKLWGKASEALEAALK--LRPSASDYAELADALD  372 (400)
T ss_pred             CchHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHh--cCCChhhHHHHHHHHH
Confidence                             2567777888888888888888888886664  4788888888776654

>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat

Probab=98.58  E-value=7.9e-08  Score=45.37  Aligned_cols=30  Identities=37%  Similarity=0.792  Sum_probs=20.5

Q ss_pred             HHHHHHHHHhhcCChhHHHHHHHHhHhCCC
Q 036068           39 LWTAMIDGYLRVNRFREALTLFQEMQTSNI   68 (178)
Q Consensus        39 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~   68 (178)
                      +||++|++|++.|++++|.++|++|.+.|+
T Consensus         2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g~   31 (31)
T PF01535_consen    2 TYNSLISGYCKMGQFEEALEVFDEMRERGI   31 (31)
T ss_pred             cHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence            566777777777777777777777766653

Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=98.57  E-value=1e-05  Score=56.95  Aligned_cols=155  Identities=11%  Similarity=0.001  Sum_probs=111.6

Q ss_pred             cchhHHHHHHHHHHhcCChhHHHHHhccCCC--CC-h---hHHHHHHHHHhhcCChhHHHHHHHHhHhCCCC-CcH-HHH
Q 036068            4 KDVISWTAIVSRYINRGQVDIARQCFDQMPE--RD-Y---VLWTAMIDGYLRVNRFREALTLFQEMQTSNIM-GDE-FTI   75 (178)
Q Consensus         4 p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~--~~-~---~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~-~~~-~~~   75 (178)
                      ..+..+-.+...+.+.|++++|...|++..+  |+ .   ..+..+..++.+.|++++|...++++.+..-. |.. .++
T Consensus        31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~  110 (235)
T TIGR03302        31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAY  110 (235)
T ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHH
Confidence            3455677788899999999999999998754  32 2   46677888999999999999999999875421 111 134


Q ss_pred             HHHHHHhccc--------cchhhHHHHHHHHHHhCcccchHHHH-----------------HHHHHHHhcCChhhhc---
Q 036068           76 VSILTARANL--------RALDLGEWIKTYIDKNKVKNDIFAGN-----------------ALIDMYCICADVEKAQ---  127 (178)
Q Consensus        76 ~~ll~~~~~~--------~~~~~a~~~~~~m~~~~~~~~~~~~~-----------------~ll~~~~~~~~~~~a~---  127 (178)
                      ..+-.++.+.        +++++|.+.++.+.+..+.. ...+.                 .+-..|.+.|++.+|.   
T Consensus       111 ~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~-~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~  189 (235)
T TIGR03302       111 YLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNS-EYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAINRF  189 (235)
T ss_pred             HHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCC-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHH
Confidence            4444444433        78899999999998775432 22221                 3345577788888877   


Q ss_pred             -------cc----hhhHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 036068          128 -------KD----KFSWTTMIVGLAISGNGDKALDMFSQMLRA  159 (178)
Q Consensus       128 -------~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~  159 (178)
                             |+    ...+..+...+...|++++|..+++.+...
T Consensus       190 ~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~  232 (235)
T TIGR03302       190 ETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN  232 (235)
T ss_pred             HHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence                   32    357778888889999999999988887764

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=98.56  E-value=1.8e-05  Score=65.01  Aligned_cols=144  Identities=8%  Similarity=0.013  Sum_probs=71.8

Q ss_pred             HHHhcCChhHHHHHhccCCCCC---hh-HHHHHHHHHhhcCChhHHHHHHHHhHhCCCCC---cHHHHHHHHHHhccccc
Q 036068           15 RYINRGQVDIARQCFDQMPERD---YV-LWTAMIDGYLRVNRFREALTLFQEMQTSNIMG---DEFTIVSILTARANLRA   87 (178)
Q Consensus        15 ~~~~~~~~~~a~~~~~~m~~~~---~~-~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~---~~~~~~~ll~~~~~~~~   87 (178)
                      .+...|++++|.+.|+++.+.+   +. .--.+...|...|++++|...|+++....-..   .......+..++.+.++
T Consensus       246 ~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~  325 (765)
T PRK10049        246 ALLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESEN  325 (765)
T ss_pred             HHHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhccc
Confidence            3345566666666666655321   11 11113445566666666666666654432110   11233444445566666


Q ss_pred             hhhHHHHHHHHHHhCc-----------ccc---hHHHHHHHHHHHhcCChhhhc-----------cchhhHHHHHHHHHh
Q 036068           88 LDLGEWIKTYIDKNKV-----------KND---IFAGNALIDMYCICADVEKAQ-----------KDKFSWTTMIVGLAI  142 (178)
Q Consensus        88 ~~~a~~~~~~m~~~~~-----------~~~---~~~~~~ll~~~~~~~~~~~a~-----------~~~~~~~~li~~~~~  142 (178)
                      +++|.++++.+.+..+           .|+   ...+..+...+...|+.++|.           .+...+..+...+..
T Consensus       326 ~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~  405 (765)
T PRK10049        326 YPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQA  405 (765)
T ss_pred             HHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Confidence            6666666665554421           112   123344455555566666555           234445555555555


Q ss_pred             cCChhHHHHHHHHHHH
Q 036068          143 SGNGDKALDMFSQMLR  158 (178)
Q Consensus       143 ~~~~~~a~~~~~~m~~  158 (178)
                      .|++++|++.+++.++
T Consensus       406 ~g~~~~A~~~l~~al~  421 (765)
T PRK10049        406 RGWPRAAENELKKAEV  421 (765)
T ss_pred             cCCHHHHHHHHHHHHh
Confidence            5555555555555554

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=98.54  E-value=1.6e-05  Score=58.73  Aligned_cols=158  Identities=13%  Similarity=0.060  Sum_probs=117.6

Q ss_pred             CCcchhHHHHHHHHHHhcCChhHHHHHhccCCCC---------------------------------------------C
Q 036068            2 KNKDVISWTAIVSRYINRGQVDIARQCFDQMPER---------------------------------------------D   36 (178)
Q Consensus         2 ~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~---------------------------------------------~   36 (178)
                      .+.++.+.....++|.+.|++.....+..+|.+.                                             +
T Consensus       183 ~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~  262 (400)
T COG3071         183 TPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRND  262 (400)
T ss_pred             CcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhccHHhhcC
Confidence            3456667788899999999999999988888631                                             3


Q ss_pred             hhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHHhccccchhhHHHHHHHHHHhCcccchHHHHHHHHH
Q 036068           37 YVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDM  116 (178)
Q Consensus        37 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~  116 (178)
                      +..-..++.-+.++|+.++|.++..+-.+++-.|+    ...+-.+.+.++.+.-.+..+.-.+.. +-++..+.+|=..
T Consensus       263 p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~----L~~~~~~l~~~d~~~l~k~~e~~l~~h-~~~p~L~~tLG~L  337 (400)
T COG3071         263 PELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR----LCRLIPRLRPGDPEPLIKAAEKWLKQH-PEDPLLLSTLGRL  337 (400)
T ss_pred             hhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh----HHHHHhhcCCCCchHHHHHHHHHHHhC-CCChhHHHHHHHH
Confidence            44555677777788888888888888777766655    222334556666665555555444433 2345788899999


Q ss_pred             HHhcCChhhhc----------cchhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC
Q 036068          117 YCICADVEKAQ----------KDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPD  164 (178)
Q Consensus       117 ~~~~~~~~~a~----------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~  164 (178)
                      |.+.+.+.+|.          |+..+|+-+-.++.+.|+.++|.+++++-+..-..|+
T Consensus       338 ~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~~~~~~  395 (400)
T COG3071         338 ALKNKLWGKASEALEAALKLRPSASDYAELADALDQLGEPEEAEQVRREALLLTRQPN  395 (400)
T ss_pred             HHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCC
Confidence            99999999997          8999999999999999999999999998875444444

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=98.52  E-value=3.5e-06  Score=63.45  Aligned_cols=116  Identities=18%  Similarity=0.111  Sum_probs=85.3

Q ss_pred             HHHHHHHHhcCChhHHHHHhccCCCCChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHHhccccchh
Q 036068           10 TAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANLRALD   89 (178)
Q Consensus        10 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~   89 (178)
                      ..|++.+...++++.|.++|+++.+.++...-.+...+...++-.+|.+++++..... +-+......-.+.|.+.++++
T Consensus       173 ~~Ll~~l~~t~~~~~ai~lle~L~~~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~k~~~~  251 (395)
T PF09295_consen  173 DTLLKYLSLTQRYDEAIELLEKLRERDPEVAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLSKKKYE  251 (395)
T ss_pred             HHHHHHHhhcccHHHHHHHHHHHHhcCCcHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHH
Confidence            4456666677888888888888887766677777777777777788888888877543 335566666666777888888


Q ss_pred             hHHHHHHHHHHhCcccchHHHHHHHHHHHhcCChhhhc
Q 036068           90 LGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ  127 (178)
Q Consensus        90 ~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~  127 (178)
                      .|.++.+...+..+ -+-.+|..|...|.+.|+++.|.
T Consensus       252 lAL~iAk~av~lsP-~~f~~W~~La~~Yi~~~d~e~AL  288 (395)
T PF09295_consen  252 LALEIAKKAVELSP-SEFETWYQLAECYIQLGDFENAL  288 (395)
T ss_pred             HHHHHHHHHHHhCc-hhHHHHHHHHHHHHhcCCHHHHH
Confidence            88888888777642 24567888888888888888876

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=98.52  E-value=1.1e-06  Score=66.45  Aligned_cols=116  Identities=9%  Similarity=0.051  Sum_probs=98.7

Q ss_pred             chhHHHHHHHHHHhcCChhHHHHHhccCCC-C-----ChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHH
Q 036068            5 DVISWTAIVSRYINRGQVDIARQCFDQMPE-R-----DYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSI   78 (178)
Q Consensus         5 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~-~-----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l   78 (178)
                      +......+++.+....+++.+..++.+.+. |     -..|.+++|+.|.+.|..++++++++.=...|+-||..+++.+
T Consensus        65 S~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~L  144 (429)
T PF10037_consen   65 SSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLL  144 (429)
T ss_pred             cHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHH
Confidence            344567788888888889999998888774 2     2346679999999999999999999999999999999999999


Q ss_pred             HHHhccccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHhc
Q 036068           79 LTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC  120 (178)
Q Consensus        79 l~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~  120 (178)
                      |+.+.+.|++..|.++...|...+.-.++.|+...+.++.+.
T Consensus       145 md~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~  186 (429)
T PF10037_consen  145 MDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY  186 (429)
T ss_pred             HHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence            999999999999999999998888767777777767666665

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=98.52  E-value=1.5e-05  Score=68.23  Aligned_cols=88  Identities=10%  Similarity=0.039  Sum_probs=68.6

Q ss_pred             cHHHHHHHHHHhccccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHhcCChhhhc----------c-chhhHHHHHHH
Q 036068           71 DEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ----------K-DKFSWTTMIVG  139 (178)
Q Consensus        71 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~----------~-~~~~~~~li~~  139 (178)
                      +...+..+...+.+.|++++|...|+...+..+ .++..+..+...|...|+.++|.          | +...+..+...
T Consensus       602 ~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P-~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~~~~~~~la~~  680 (1157)
T PRK11447        602 STRIDLTLADWAQQRGDYAAARAAYQRVLTREP-GNADARLGLIEVDIAQGDLAAARAQLAKLPATANDSLNTQRRVALA  680 (1157)
T ss_pred             CchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCChHHHHHHHHH
Confidence            444556677777888888888888888887754 35778888888899999998887          2 44556667778


Q ss_pred             HHhcCChhHHHHHHHHHHHc
Q 036068          140 LAISGNGDKALDMFSQMLRA  159 (178)
Q Consensus       140 ~~~~~~~~~a~~~~~~m~~~  159 (178)
                      +...|++++|.++|++++..
T Consensus       681 ~~~~g~~~eA~~~~~~al~~  700 (1157)
T PRK11447        681 WAALGDTAAAQRTFNRLIPQ  700 (1157)
T ss_pred             HHhCCCHHHHHHHHHHHhhh
Confidence            88899999999999998864

>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses

Probab=98.51  E-value=9.6e-07  Score=60.31  Aligned_cols=102  Identities=15%  Similarity=0.149  Sum_probs=74.5

Q ss_pred             CCcHHHHHHHHHHhcc-----ccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHhcCChhhhccchhhHHHHHHHHHhc
Q 036068           69 MGDEFTIVSILTARAN-----LRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQKDKFSWTTMIVGLAIS  143 (178)
Q Consensus        69 ~~~~~~~~~ll~~~~~-----~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~li~~~~~~  143 (178)
                      ..+..+|..+++.|.+     .|+.+-....+..|.+.|++-|..+|+.|++.+=+ |.+.    ....+.++.-.|  -
T Consensus        44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv----p~n~fQ~~F~hy--p  116 (228)
T PF06239_consen   44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV----PRNFFQAEFMHY--P  116 (228)
T ss_pred             cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc----cccHHHHHhccC--c
Confidence            4567777777777753     36667777777888888888888888888887665 4333    222233333222  2


Q ss_pred             CChhHHHHHHHHHHHcCCCCChhHHHHHHhhhhc
Q 036068          144 GNGDKALDMFSQMLRASIKPDEVAYVGVLSACTH  177 (178)
Q Consensus       144 ~~~~~a~~~~~~m~~~g~~p~~~t~~~li~a~~~  177 (178)
                      .+-+.|++++++|.+.|+.||.+|+..|++.|++
T Consensus       117 ~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~  150 (228)
T PF06239_consen  117 RQQECAIDLLEQMENNGVMPDKETEQMLLNIFGR  150 (228)
T ss_pred             HHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhcc
Confidence            4567899999999999999999999999999875

ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=98.47  E-value=6.4e-06  Score=59.44  Aligned_cols=108  Identities=18%  Similarity=0.087  Sum_probs=71.0

Q ss_pred             cCChhHHHHHhccCCCCChhHHH---HHHHHHhhcCChhHHHHHHHHhHhCCCCCc---HHHHHHHHHHhccccchhhHH
Q 036068           19 RGQVDIARQCFDQMPERDYVLWT---AMIDGYLRVNRFREALTLFQEMQTSNIMGD---EFTIVSILTARANLRALDLGE   92 (178)
Q Consensus        19 ~~~~~~a~~~~~~m~~~~~~~~~---~li~~~~~~~~~~~a~~~~~~m~~~~~~~~---~~~~~~ll~~~~~~~~~~~a~   92 (178)
                      ..+.++|.++|-+|.+-|..||.   +|-+.|.+.|++|.|+++-+-+.++---+.   ....-.+-+=|...|-+|.|+
T Consensus        48 s~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE  127 (389)
T COG2956          48 SNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRAE  127 (389)
T ss_pred             hcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHH
Confidence            45677888888888765555544   466677778888888888777766411111   122334455567777788888


Q ss_pred             HHHHHHHHhCcccchHHHHHHHHHHHhcCChhhhc
Q 036068           93 WIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ  127 (178)
Q Consensus        93 ~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~  127 (178)
                      ++|..+.+.+ +--......|+..|-+..+|++|.
T Consensus       128 ~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAI  161 (389)
T COG2956         128 DIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAI  161 (389)
T ss_pred             HHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHH
Confidence            8888777644 234556677777777777777776

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.47  E-value=4.5e-06  Score=60.48  Aligned_cols=159  Identities=11%  Similarity=-0.038  Sum_probs=116.1

Q ss_pred             CcchhHHHHHHHHHHhcCChhHHHHHhccCCC--C-ChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHH
Q 036068            3 NKDVISWTAIVSRYINRGQVDIARQCFDQMPE--R-DYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSIL   79 (178)
Q Consensus         3 ~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll   79 (178)
                      +|-+.||-.|-+.|-+-.+...|+.+|.+-.+  | |+....-.-+.+...++.++|.+++++..+.. ..++.....+.
T Consensus       253 ~~~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~-~~nvEaiAcia  331 (478)
T KOG1129|consen  253 FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQQEDALQLYKLVLKLH-PINVEAIACIA  331 (478)
T ss_pred             CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHhHHHHHHHHHHHHhcC-Cccceeeeeee
Confidence            45667777778888888888888888877654  3 33333345566677778888888888876654 33555666667


Q ss_pred             HHhccccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHhcCChhhhc--------------------------------
Q 036068           80 TARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ--------------------------------  127 (178)
Q Consensus        80 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~--------------------------------  127 (178)
                      ..|.-.++++-|..+|.++.+.|.. ++..|+.+--++...++++-+.                                
T Consensus       332 ~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD  410 (478)
T KOG1129|consen  332 VGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGD  410 (478)
T ss_pred             eccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccc
Confidence            7777788889999999999999875 6777888777777777777665                                


Q ss_pred             ----------------cchhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCh
Q 036068          128 ----------------KDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDE  165 (178)
Q Consensus       128 ----------------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~  165 (178)
                                      .+...+|.|...-.+.|++++|..++.....  +.|+.
T Consensus       411 ~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s--~~P~m  462 (478)
T KOG1129|consen  411 FNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKS--VMPDM  462 (478)
T ss_pred             hHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhh--hCccc
Confidence                            2567788888888889999999998887664  34543

>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=98.47  E-value=4e-06  Score=63.52  Aligned_cols=112  Identities=13%  Similarity=0.036  Sum_probs=95.5

Q ss_pred             CCCCCcHHHHHHHHHHhccccchhhHHHHHHHHHHh--CcccchHHHHHHHHHHHhcCChhhhc------------cchh
Q 036068           66 SNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKN--KVKNDIFAGNALIDMYCICADVEKAQ------------KDKF  131 (178)
Q Consensus        66 ~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~--~~~~~~~~~~~ll~~~~~~~~~~~a~------------~~~~  131 (178)
                      .+...+.....++++.+....+.+.+..++..+...  .....+.|.+++|..|.+.|..+.+.            ||..
T Consensus        60 ~~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~  139 (429)
T PF10037_consen   60 RKKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNF  139 (429)
T ss_pred             cCCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChh
Confidence            445667788888999999999999999998888765  34445667789999999999988887            8999


Q ss_pred             hHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhHHHHHHhhhhc
Q 036068          132 SWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACTH  177 (178)
Q Consensus       132 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~a~~~  177 (178)
                      ++|.||+.+.+.|++..|.++.-+|...+...+..|+..-+.+|.+
T Consensus       140 s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~  185 (429)
T PF10037_consen  140 SFNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYK  185 (429)
T ss_pred             hHHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHH
Confidence            9999999999999999999999999988888888888888887753

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].

>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses

Probab=98.46  E-value=2.6e-06  Score=58.25  Aligned_cols=103  Identities=11%  Similarity=0.104  Sum_probs=86.3

Q ss_pred             HHHHHhccC--CCCChhHHHHHHHHHhhc-----CChhHHHHHHHHhHhCCCCCcHHHHHHHHHHhcccc----------
Q 036068           24 IARQCFDQM--PERDYVLWTAMIDGYLRV-----NRFREALTLFQEMQTSNIMGDEFTIVSILTARANLR----------   86 (178)
Q Consensus        24 ~a~~~~~~m--~~~~~~~~~~li~~~~~~-----~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~----------   86 (178)
                      ...+.|+..  ..+|-.+|..+++.|.+.     |..+-....+++|.+-|+.-|..+|+.||+.+=+..          
T Consensus        32 ~~~~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~  111 (228)
T PF06239_consen   32 PHEELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAE  111 (228)
T ss_pred             chHHHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHH
Confidence            345566665  567999999999999854     778888889999999999999999999999986532          


Q ss_pred             ------chhhHHHHHHHHHHhCcccchHHHHHHHHHHHhcCChhhh
Q 036068           87 ------ALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKA  126 (178)
Q Consensus        87 ------~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a  126 (178)
                            +-+-|.+++++|...|+-||..++..+++.+++.+..-..
T Consensus       112 F~hyp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~p~~K  157 (228)
T PF06239_consen  112 FMHYPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSHPMKK  157 (228)
T ss_pred             hccCcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccHHHHH
Confidence                  2246899999999999999999999999999998876554

ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].

>TIGR00540 hemY_coli hemY protein

Probab=98.46  E-value=3.6e-05  Score=58.80  Aligned_cols=155  Identities=14%  Similarity=-0.022  Sum_probs=112.5

Q ss_pred             HHHHHHHHHhcCChhHHHHHhccCCC--CCh--hHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHHhcc
Q 036068            9 WTAIVSRYINRGQVDIARQCFDQMPE--RDY--VLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARAN   84 (178)
Q Consensus         9 ~~~li~~~~~~~~~~~a~~~~~~m~~--~~~--~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~   84 (178)
                      +-.......+.|+++.|.+.+.+..+  |+.  ..--.....+...|+++.|.+.++++.+.+ +-+......+...+.+
T Consensus       121 ~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~-P~~~~~l~ll~~~~~~  199 (409)
T TIGR00540       121 LIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARHGVDKLLEMA-PRHKEVLKLAEEAYIR  199 (409)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence            34456777788999999999998643  333  333445778888999999999999999886 3366788899999999


Q ss_pred             ccchhhHHHHHHHHHHhCcccchHHHHHHHHHH---HhcCChh----hh------cc-----chhhHHHHHHHHHhcCCh
Q 036068           85 LRALDLGEWIKTYIDKNKVKNDIFAGNALIDMY---CICADVE----KA------QK-----DKFSWTTMIVGLAISGNG  146 (178)
Q Consensus        85 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~---~~~~~~~----~a------~~-----~~~~~~~li~~~~~~~~~  146 (178)
                      .|+++++.+++..+.+.+..++......-...+   ...+..+    ..      .|     +...+-.+...+...|+.
T Consensus       200 ~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~  279 (409)
T TIGR00540       200 SGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDH  279 (409)
T ss_pred             HhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCCh
Confidence            999999999999999987643332211111211   2111111    11      13     778888999999999999


Q ss_pred             hHHHHHHHHHHHcCCCCChh
Q 036068          147 DKALDMFSQMLRASIKPDEV  166 (178)
Q Consensus       147 ~~a~~~~~~m~~~g~~p~~~  166 (178)
                      ++|.+++++..+.  .||..
T Consensus       280 ~~A~~~l~~~l~~--~pd~~  297 (409)
T TIGR00540       280 DSAQEIIFDGLKK--LGDDR  297 (409)
T ss_pred             HHHHHHHHHHHhh--CCCcc
Confidence            9999999999875  35544

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=98.46  E-value=6.5e-05  Score=51.91  Aligned_cols=164  Identities=7%  Similarity=-0.077  Sum_probs=128.8

Q ss_pred             HHHHHHHHHHhcCChhHHHHHhccCCC--C-ChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHHhcc
Q 036068            8 SWTAIVSRYINRGQVDIARQCFDQMPE--R-DYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARAN   84 (178)
Q Consensus         8 ~~~~li~~~~~~~~~~~a~~~~~~m~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~   84 (178)
                      ...-|--+|.+.|+...|..-+++..+  | +..+|..+-..|.+.|+.+.|.+-|++-.+.. +-+....|..--.+|.
T Consensus        37 arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FLC~  115 (250)
T COG3063          37 ARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFLCA  115 (250)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHHHh
Confidence            455677789999999999999998875  3 66688889999999999999999999987764 2245667777777899


Q ss_pred             ccchhhHHHHHHHHHHhCc-ccchHHHHHHHHHHHhcCChhhhc----------c-chhhHHHHHHHHHhcCChhHHHHH
Q 036068           85 LRALDLGEWIKTYIDKNKV-KNDIFAGNALIDMYCICADVEKAQ----------K-DKFSWTTMIVGLAISGNGDKALDM  152 (178)
Q Consensus        85 ~~~~~~a~~~~~~m~~~~~-~~~~~~~~~ll~~~~~~~~~~~a~----------~-~~~~~~~li~~~~~~~~~~~a~~~  152 (178)
                      .|++++|.+.|+.....-. ..-..+|..+.-+..+.|+.+.|.          | ...+.-.+.....+.|++-.|..+
T Consensus       116 qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar~~  195 (250)
T COG3063         116 QGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPARLY  195 (250)
T ss_pred             CCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHHHH
Confidence            9999999999988877542 223677888888888999998887          2 456667778888888999999988


Q ss_pred             HHHHHHcCCCCChhHHHHHHh
Q 036068          153 FSQMLRASIKPDEVAYVGVLS  173 (178)
Q Consensus       153 ~~~m~~~g~~p~~~t~~~li~  173 (178)
                      +++....+. ++..+.-..|+
T Consensus       196 ~~~~~~~~~-~~A~sL~L~ir  215 (250)
T COG3063         196 LERYQQRGG-AQAESLLLGIR  215 (250)
T ss_pred             HHHHHhccc-ccHHHHHHHHH
Confidence            888877654 76666555443

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=98.44  E-value=3.9e-05  Score=58.42  Aligned_cols=150  Identities=15%  Similarity=0.006  Sum_probs=104.6

Q ss_pred             HHHHHHHHHhcCChhHHHHHhccCCC--CChhHHH--HHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHHhcc
Q 036068            9 WTAIVSRYINRGQVDIARQCFDQMPE--RDYVLWT--AMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARAN   84 (178)
Q Consensus         9 ~~~li~~~~~~~~~~~a~~~~~~m~~--~~~~~~~--~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~   84 (178)
                      |-.......+.|+++.|.+.+.++.+  |+....-  .....+...|++++|...+++..+.. +-+......+...|.+
T Consensus       121 ~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~-P~~~~al~ll~~~~~~  199 (398)
T PRK10747        121 YLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVA-PRHPEVLRLAEQAYIR  199 (398)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHH
Confidence            33334455889999999999998875  3433232  33568888999999999999998876 3356778888999999


Q ss_pred             ccchhhHHHHHHHHHHhCcccchH-------HHHHHHHHHHhcCChhhhc-----------cchhhHHHHHHHHHhcCCh
Q 036068           85 LRALDLGEWIKTYIDKNKVKNDIF-------AGNALIDMYCICADVEKAQ-----------KDKFSWTTMIVGLAISGNG  146 (178)
Q Consensus        85 ~~~~~~a~~~~~~m~~~~~~~~~~-------~~~~ll~~~~~~~~~~~a~-----------~~~~~~~~li~~~~~~~~~  146 (178)
                      .|+++++.+++..+.+.+..++..       +|..++....+..+.+...           .++.....+...+...|+.
T Consensus       200 ~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~  279 (398)
T PRK10747        200 TGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDH  279 (398)
T ss_pred             HHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCH
Confidence            999999999999999877553221       2222232222222111111           3666777788888888888


Q ss_pred             hHHHHHHHHHHHc
Q 036068          147 DKALDMFSQMLRA  159 (178)
Q Consensus       147 ~~a~~~~~~m~~~  159 (178)
                      ++|.+++++..+.
T Consensus       280 ~~A~~~L~~~l~~  292 (398)
T PRK10747        280 DTAQQIILDGLKR  292 (398)
T ss_pred             HHHHHHHHHHHhc
Confidence            8888888888774

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=98.43  E-value=2.7e-05  Score=59.01  Aligned_cols=136  Identities=15%  Similarity=0.068  Sum_probs=113.2

Q ss_pred             HHHhcCChhHHHHHhccCCC--C-ChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCc-HHHHHHHHHHhccccchhh
Q 036068           15 RYINRGQVDIARQCFDQMPE--R-DYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGD-EFTIVSILTARANLRALDL   90 (178)
Q Consensus        15 ~~~~~~~~~~a~~~~~~m~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~ll~~~~~~~~~~~   90 (178)
                      ...+.|+++.|+..++.+..  | |...+......+.+.++.++|.+.++++...  .|+ ....-.+-+++.+.|++.+
T Consensus       315 ~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all~~g~~~e  392 (484)
T COG4783         315 QTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALLKGGKPQE  392 (484)
T ss_pred             HHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHhcCChHH
Confidence            34467888888888888753  4 6666777778999999999999999999886  466 5566677889999999999


Q ss_pred             HHHHHHHHHHhCcccchHHHHHHHHHHHhcCChhhhccchhhHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 036068           91 GEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQKDKFSWTTMIVGLAISGNGDKALDMFSQMLRA  159 (178)
Q Consensus        91 a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~  159 (178)
                      |..+++...... +.++..|..|-.+|...|+..++      -.+.-.++...|+++.|...+.+..+.
T Consensus       393 ai~~L~~~~~~~-p~dp~~w~~LAqay~~~g~~~~a------~~A~AE~~~~~G~~~~A~~~l~~A~~~  454 (484)
T COG4783         393 AIRILNRYLFND-PEDPNGWDLLAQAYAELGNRAEA------LLARAEGYALAGRLEQAIIFLMRASQQ  454 (484)
T ss_pred             HHHHHHHHhhcC-CCCchHHHHHHHHHHHhCchHHH------HHHHHHHHHhCCCHHHHHHHHHHHHHh
Confidence            999999988876 45899999999999999998876      455667888999999999999988774

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=98.39  E-value=2e-05  Score=61.66  Aligned_cols=153  Identities=16%  Similarity=0.115  Sum_probs=87.2

Q ss_pred             HHHHHHHHHHhcCChhHHHHHhccCCC--C-ChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHHhcc
Q 036068            8 SWTAIVSRYINRGQVDIARQCFDQMPE--R-DYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARAN   84 (178)
Q Consensus         8 ~~~~li~~~~~~~~~~~a~~~~~~m~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~   84 (178)
                      .|+.|..++-..|++.+|...+++...  | -....+.|-..|...|.+++|.++|..-.+-. +--...++.|...|-+
T Consensus       322 Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~-p~~aaa~nNLa~i~kq  400 (966)
T KOG4626|consen  322 AYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATRLYLKALEVF-PEFAAAHNNLASIYKQ  400 (966)
T ss_pred             HHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHhhC-hhhhhhhhhHHHHHHh
Confidence            355555555555555555555554432  2 23344455555555555555555555544432 1123455556666666


Q ss_pred             ccchhhHHHHHHHHHHhCcccc-hHHHHHHHHHHHhcCChhhhc----------cc-hhhHHHHHHHHHhcCChhHHHHH
Q 036068           85 LRALDLGEWIKTYIDKNKVKND-IFAGNALIDMYCICADVEKAQ----------KD-KFSWTTMIVGLAISGNGDKALDM  152 (178)
Q Consensus        85 ~~~~~~a~~~~~~m~~~~~~~~-~~~~~~ll~~~~~~~~~~~a~----------~~-~~~~~~li~~~~~~~~~~~a~~~  152 (178)
                      .|++++|...|++.++-  .|+ ...++.+-..|-..|+++.|.          |. ....+.|...|-..|++.+|.+-
T Consensus       401 qgnl~~Ai~~YkealrI--~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~s  478 (966)
T KOG4626|consen  401 QGNLDDAIMCYKEALRI--KPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQS  478 (966)
T ss_pred             cccHHHHHHHHHHHHhc--CchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHH
Confidence            66666666666655543  232 344555555555556655554          22 34567788888888889999888


Q ss_pred             HHHHHHcCCCCCh
Q 036068          153 FSQMLRASIKPDE  165 (178)
Q Consensus       153 ~~~m~~~g~~p~~  165 (178)
                      |++.++  ++||.
T Consensus       479 Y~~aLk--lkPDf  489 (966)
T KOG4626|consen  479 YRTALK--LKPDF  489 (966)
T ss_pred             HHHHHc--cCCCC
Confidence            888775  46765

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=98.38  E-value=4e-05  Score=63.05  Aligned_cols=146  Identities=12%  Similarity=0.010  Sum_probs=116.7

Q ss_pred             HHHHHHHHHhcCChhHHHHHhccCCC---CChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHHhccc
Q 036068            9 WTAIVSRYINRGQVDIARQCFDQMPE---RDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANL   85 (178)
Q Consensus         9 ~~~li~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~   85 (178)
                      -.-.+......|+.++|+++|.+...   .+...+..+...+.+.|++++|.++|++..+.. +.+...+..+..++.+.
T Consensus        18 ~~d~~~ia~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~l~~~   96 (765)
T PRK10049         18 IADWLQIALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGLILTLADA   96 (765)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHC
Confidence            34567777889999999999998764   355568889999999999999999999987763 33456677888888999


Q ss_pred             cchhhHHHHHHHHHHhCcccchHHHHHHHHHHHhcCChhhhc----------c-chhhHHHHHHHHHhcCChhHHHHHHH
Q 036068           86 RALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ----------K-DKFSWTTMIVGLAISGNGDKALDMFS  154 (178)
Q Consensus        86 ~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~----------~-~~~~~~~li~~~~~~~~~~~a~~~~~  154 (178)
                      |++++|...++...+..+ .+.. +..+-..+...|+.++|.          | +...+..+...+...|+.++|++.++
T Consensus        97 g~~~eA~~~l~~~l~~~P-~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~Al~~l~  174 (765)
T PRK10049         97 GQYDEALVKAKQLVSGAP-DKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPALGAID  174 (765)
T ss_pred             CCHHHHHHHHHHHHHhCC-CCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHH
Confidence            999999999999988753 3455 888888899999999987          3 45556677778888899999998887


Q ss_pred             HHH
Q 036068          155 QML  157 (178)
Q Consensus       155 ~m~  157 (178)
                      +..
T Consensus       175 ~~~  177 (765)
T PRK10049        175 DAN  177 (765)
T ss_pred             hCC
Confidence            544

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=98.36  E-value=3.4e-05  Score=50.31  Aligned_cols=106  Identities=9%  Similarity=-0.051  Sum_probs=71.6

Q ss_pred             ChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHHhccccchhhHHHHHHHHHHhCcccchHHHHHHHH
Q 036068           36 DYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALID  115 (178)
Q Consensus        36 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~  115 (178)
                      ++..+..+-..+...|++++|...|++..... +.+...+..+-.++.+.|++++|...|+...+..+.           
T Consensus        23 ~p~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~-----------   90 (144)
T PRK15359         23 DPETVYASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDAS-----------   90 (144)
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-----------
Confidence            34345555666777778888888887776654 336667777777777888888888888777765432           


Q ss_pred             HHHhcCChhhhccchhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhHH
Q 036068          116 MYCICADVEKAQKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAY  168 (178)
Q Consensus       116 ~~~~~~~~~~a~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~  168 (178)
                                   +...+..+..++...|++++|...|++.++.  .|+...+
T Consensus        91 -------------~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~--~p~~~~~  128 (144)
T PRK15359         91 -------------HPEPVYQTGVCLKMMGEPGLAREAFQTAIKM--SYADASW  128 (144)
T ss_pred             -------------CcHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHH
Confidence                         3445666666777777788888888887754  4554333

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=98.34  E-value=2.6e-06  Score=66.33  Aligned_cols=150  Identities=12%  Similarity=0.042  Sum_probs=106.8

Q ss_pred             hHHHHHHHHHHhcCChhHHHHHhccCCC--C-----------------------------------ChhHHHHHHHHHhh
Q 036068            7 ISWTAIVSRYINRGQVDIARQCFDQMPE--R-----------------------------------DYVLWTAMIDGYLR   49 (178)
Q Consensus         7 ~~~~~li~~~~~~~~~~~a~~~~~~m~~--~-----------------------------------~~~~~~~li~~~~~   49 (178)
                      .+...+-++|...++++++.++|+..++  |                                   .+.+|..+-..|.-
T Consensus       354 wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~Li~~~~~sPesWca~GNcfSL  433 (638)
T KOG1126|consen  354 WVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQDLIDTDPNSPESWCALGNCFSL  433 (638)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHHHHhhCCCCcHHHHHhcchhhh
Confidence            4556778899999999999999998863  1                                   45567777777777


Q ss_pred             cCChhHHHHHHHHhHhCCCCC-cHHHHHHHHHHhccccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHhcCChhhhc-
Q 036068           50 VNRFREALTLFQEMQTSNIMG-DEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ-  127 (178)
Q Consensus        50 ~~~~~~a~~~~~~m~~~~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~-  127 (178)
                      +++.+.|+++|++-....  | .+.+|+.+-.=+....++|.|...|+....... .+-..|--+-..|.|.++++.|+ 
T Consensus       434 Qkdh~~Aik~f~RAiQld--p~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~-rhYnAwYGlG~vy~Kqek~e~Ae~  510 (638)
T KOG1126|consen  434 QKDHDTAIKCFKRAIQLD--PRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDP-RHYNAWYGLGTVYLKQEKLEFAEF  510 (638)
T ss_pred             hhHHHHHHHHHHHhhccC--CccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCc-hhhHHHHhhhhheeccchhhHHHH
Confidence            777777877777765543  4 556666666666777777777777766554332 23445555666788888888776 


Q ss_pred             ----------cchhhHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 036068          128 ----------KDKFSWTTMIVGLAISGNGDKALDMFSQMLRA  159 (178)
Q Consensus       128 ----------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~  159 (178)
                                .+.+..-.+...+-+.|+.|+|+++|++....
T Consensus       511 ~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~l  552 (638)
T KOG1126|consen  511 HFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHL  552 (638)
T ss_pred             HHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhc
Confidence                      35666666667777888888888888887653

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=98.32  E-value=3e-05  Score=60.21  Aligned_cols=152  Identities=11%  Similarity=0.082  Sum_probs=112.9

Q ss_pred             hHHHHHHHHHHhcCChhHHHHHhccCCC----------CChh-HHHHHHHHHhhcCChhHHHHHHHHhHhC-----CC--
Q 036068            7 ISWTAIVSRYINRGQVDIARQCFDQMPE----------RDYV-LWTAMIDGYLRVNRFREALTLFQEMQTS-----NI--   68 (178)
Q Consensus         7 ~~~~~li~~~~~~~~~~~a~~~~~~m~~----------~~~~-~~~~li~~~~~~~~~~~a~~~~~~m~~~-----~~--   68 (178)
                      .+...+...|...|+++.|..+++...+          +.+. .-+.+-..|...+++++|..+|+++..-     |-  
T Consensus       200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h  279 (508)
T KOG1840|consen  200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDH  279 (508)
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCC
Confidence            3456699999999999999999987543          2222 2333556888899999999999998542     21  


Q ss_pred             CCcHHHHHHHHHHhccccchhhHHHHHHHHHH---h--Cc-ccc-hHHHHHHHHHHHhcCChhhhc--------------
Q 036068           69 MGDEFTIVSILTARANLRALDLGEWIKTYIDK---N--KV-KND-IFAGNALIDMYCICADVEKAQ--------------  127 (178)
Q Consensus        69 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~---~--~~-~~~-~~~~~~ll~~~~~~~~~~~a~--------------  127 (178)
                      +.-+.+++.|-.+|.+.|++++|..+++...+   .  |. .|. ...++.+...++..++++.|.              
T Consensus       280 ~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~  359 (508)
T KOG1840|consen  280 PAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAP  359 (508)
T ss_pred             HHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhc
Confidence            22245777788889999999999988876543   1  11 122 344666777788889998887              


Q ss_pred             -c----chhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 036068          128 -K----DKFSWTTMIVGLAISGNGDKALDMFSQMLR  158 (178)
Q Consensus       128 -~----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~  158 (178)
                       +    -..+++.|-..|...|++++|.+++++.+.
T Consensus       360 g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~  395 (508)
T KOG1840|consen  360 GEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQ  395 (508)
T ss_pred             cccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence             1    246788999999999999999999999875

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=98.32  E-value=0.00019  Score=49.40  Aligned_cols=149  Identities=9%  Similarity=0.038  Sum_probs=99.4

Q ss_pred             HHHHHHhcCChhHHHHHhccCCCCChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHHhccccchhhH
Q 036068           12 IVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANLRALDLG   91 (178)
Q Consensus        12 li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a   91 (178)
                      -+-.|...|+++.+..-.+.+..+.        ..+...++.+++...+++..+.+ +.+...|..+-..|...|++++|
T Consensus        22 ~~~~Y~~~g~~~~v~~~~~~~~~~~--------~~~~~~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A   92 (198)
T PRK10370         22 CVGSYLLSPKWQAVRAEYQRLADPL--------HQFASQQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNA   92 (198)
T ss_pred             HHHHHHHcchHHHHHHHHHHHhCcc--------ccccCchhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHH
Confidence            3456788888888655543322221        01122455666766676666554 44667777777778888888888


Q ss_pred             HHHHHHHHHhCcccchHHHHHHHHH-HHhcCCh--hhhc-----------cchhhHHHHHHHHHhcCChhHHHHHHHHHH
Q 036068           92 EWIKTYIDKNKVKNDIFAGNALIDM-YCICADV--EKAQ-----------KDKFSWTTMIVGLAISGNGDKALDMFSQML  157 (178)
Q Consensus        92 ~~~~~~m~~~~~~~~~~~~~~ll~~-~~~~~~~--~~a~-----------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~  157 (178)
                      ...++...+.... +...+..+-.. +...|+.  ++|.           .+...+..+...+.+.|++++|...|++++
T Consensus        93 ~~a~~~Al~l~P~-~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL  171 (198)
T PRK10370         93 LLAYRQALQLRGE-NAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVL  171 (198)
T ss_pred             HHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            8888877776643 56666666664 3565653  4444           367788888899999999999999999998


Q ss_pred             HcCCCCChhHHHHH
Q 036068          158 RASIKPDEVAYVGV  171 (178)
Q Consensus       158 ~~g~~p~~~t~~~l  171 (178)
                      +. .+|+..-+..+
T Consensus       172 ~l-~~~~~~r~~~i  184 (198)
T PRK10370        172 DL-NSPRVNRTQLV  184 (198)
T ss_pred             hh-CCCCccHHHHH
Confidence            84 35666555444

>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]

Probab=98.29  E-value=5.2e-05  Score=63.96  Aligned_cols=158  Identities=13%  Similarity=0.123  Sum_probs=98.7

Q ss_pred             hHHHHHHHHHHhcCChhHHHHHhccCC---------------------------------------CC--ChhHHHHHHH
Q 036068            7 ISWTAIVSRYINRGQVDIARQCFDQMP---------------------------------------ER--DYVLWTAMID   45 (178)
Q Consensus         7 ~~~~~li~~~~~~~~~~~a~~~~~~m~---------------------------------------~~--~~~~~~~li~   45 (178)
                      ..|-.-+..+...+++++|.+++++..                                       +-  -...|..|..
T Consensus      1459 i~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqycd~~~V~~~L~~ 1538 (1710)
T KOG1070|consen 1459 ILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYCDAYTVHLKLLG 1538 (1710)
T ss_pred             hHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhcchHHHHHHHHH
Confidence            346666777777777777776666543                                       10  1223455566


Q ss_pred             HHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHHhccccchhhHHHHHHHHHHhCcc-cchHHHHHHHHHHHhcCChh
Q 036068           46 GYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVK-NDIFAGNALIDMYCICADVE  124 (178)
Q Consensus        46 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~-~~~~~~~~ll~~~~~~~~~~  124 (178)
                      .|.+.+..++|-++|++|.+.= .-....|...+..+.+.++-+.|..++.+..+.=++ ............-++.|+.+
T Consensus      1539 iy~k~ek~~~A~ell~~m~KKF-~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GDae 1617 (1710)
T KOG1070|consen 1539 IYEKSEKNDEADELLRLMLKKF-GQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYGDAE 1617 (1710)
T ss_pred             HHHHhhcchhHHHHHHHHHHHh-cchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCCch
Confidence            6666666666666666665431 124455555666666666666666666555543221 12334444445555556555


Q ss_pred             hhc-----------cchhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCh
Q 036068          125 KAQ-----------KDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDE  165 (178)
Q Consensus       125 ~a~-----------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~  165 (178)
                      .+.           .-...|+..|+.-.++|+.+.+..+|++....++.|--
T Consensus      1618 RGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kk 1669 (1710)
T KOG1070|consen 1618 RGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKK 1669 (1710)
T ss_pred             hhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhH
Confidence            532           36778999999999999999999999999998887643

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=98.29  E-value=4e-05  Score=59.52  Aligned_cols=167  Identities=13%  Similarity=0.064  Sum_probs=122.5

Q ss_pred             hhHHHHHHHHHHhcCChhHHHHHhccCCC----------CChh-HHHHHHHHHhhcCChhHHHHHHHHhHhC---CCCC-
Q 036068            6 VISWTAIVSRYINRGQVDIARQCFDQMPE----------RDYV-LWTAMIDGYLRVNRFREALTLFQEMQTS---NIMG-   70 (178)
Q Consensus         6 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~----------~~~~-~~~~li~~~~~~~~~~~a~~~~~~m~~~---~~~~-   70 (178)
                      +.+++.|-..|.+.|++++|...+++..+          +.+. .++.+...+...+++++|..++++..+.   -..+ 
T Consensus       283 a~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~  362 (508)
T KOG1840|consen  283 AATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGED  362 (508)
T ss_pred             HHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhcccc
Confidence            34688899999999999998877776532          2222 4666777888899999999999875431   1122 


Q ss_pred             ---cHHHHHHHHHHhccccchhhHHHHHHHHHHhC----c--cc-chHHHHHHHHHHHhcCChhhhc-------------
Q 036068           71 ---DEFTIVSILTARANLRALDLGEWIKTYIDKNK----V--KN-DIFAGNALIDMYCICADVEKAQ-------------  127 (178)
Q Consensus        71 ---~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~----~--~~-~~~~~~~ll~~~~~~~~~~~a~-------------  127 (178)
                         -..+++.+-..|-+.|++++|+++++..++..    -  .+ ....++.+-..|.+.+..++|.             
T Consensus       363 ~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~  442 (508)
T KOG1840|consen  363 NVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLC  442 (508)
T ss_pred             chHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHh
Confidence               24689999999999999999999998776432    2  22 2445677777788888888765             


Q ss_pred             ----c-chhhHHHHHHHHHhcCChhHHHHHHHHHHHc------CCCCChhHHHHHH
Q 036068          128 ----K-DKFSWTTMIVGLAISGNGDKALDMFSQMLRA------SIKPDEVAYVGVL  172 (178)
Q Consensus       128 ----~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~------g~~p~~~t~~~li  172 (178)
                          | ...+|..|...|.+.|++++|.++-+...+.      +..|+........
T Consensus       443 g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  498 (508)
T KOG1840|consen  443 GPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLNAREQRLGTASPTVEDEKLRL  498 (508)
T ss_pred             CCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHcCCCCCcchhHHHHhh
Confidence                2 4678999999999999999999998887631      3455555554443

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=98.29  E-value=8.8e-06  Score=63.56  Aligned_cols=147  Identities=13%  Similarity=0.052  Sum_probs=77.7

Q ss_pred             HHHHHHHHHHhcCChhHHHHHhccCC--CC-ChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCc-HHHHHHHHHHhc
Q 036068            8 SWTAIVSRYINRGQVDIARQCFDQMP--ER-DYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGD-EFTIVSILTARA   83 (178)
Q Consensus         8 ~~~~li~~~~~~~~~~~a~~~~~~m~--~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~ll~~~~   83 (178)
                      .|-.|-..|-..+.++.|...+.+..  +| ....+..+-..|-..|+++.|++.|++..+..  |+ ...|+.+..++.
T Consensus       254 AYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~--P~F~~Ay~NlanALk  331 (966)
T KOG4626|consen  254 AYINLGNVYKEARIFDRAVSCYLRALNLRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQ--PNFPDAYNNLANALK  331 (966)
T ss_pred             HHhhHHHHHHHHhcchHHHHHHHHHHhcCCcchhhccceEEEEeccccHHHHHHHHHHHHhcC--CCchHHHhHHHHHHH
Confidence            45555666666666666666665432  22 34445555555555566666666555554432  22 345555555555


Q ss_pred             cccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHhcCChhhhc----------c-chhhHHHHHHHHHhcCChhHHHHH
Q 036068           84 NLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ----------K-DKFSWTTMIVGLAISGNGDKALDM  152 (178)
Q Consensus        84 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~----------~-~~~~~~~li~~~~~~~~~~~a~~~  152 (178)
                      ..|+..+|.+.|.......+. .....+.|-..|...|.+++|.          | -...+|.|...|-++|++++|+..
T Consensus       332 d~G~V~ea~~cYnkaL~l~p~-hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~  410 (966)
T KOG4626|consen  332 DKGSVTEAVDCYNKALRLCPN-HADAMNNLGNIYREQGKIEEATRLYLKALEVFPEFAAAHNNLASIYKQQGNLDDAIMC  410 (966)
T ss_pred             hccchHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhccchHHHHHHHHHHhhChhhhhhhhhHHHHHHhcccHHHHHHH
Confidence            556666665555555544322 3444555555555555555554          1 133345555555555555555555


Q ss_pred             HHHHH
Q 036068          153 FSQML  157 (178)
Q Consensus       153 ~~~m~  157 (178)
                      |++.+
T Consensus       411 Ykeal  415 (966)
T KOG4626|consen  411 YKEAL  415 (966)
T ss_pred             HHHHH
Confidence            55544

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=98.27  E-value=0.0001  Score=51.76  Aligned_cols=144  Identities=18%  Similarity=0.131  Sum_probs=94.1

Q ss_pred             HHHHHHhcCChhHHHHHhccCC-C--CChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHHhccccch
Q 036068           12 IVSRYINRGQVDIARQCFDQMP-E--RDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANLRAL   88 (178)
Q Consensus        12 li~~~~~~~~~~~a~~~~~~m~-~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~   88 (178)
                      +-..+.-.|+-+....+..... .  .|...-+.+....++.|++..|.+.|++..... ++|...|+.+--+|-+.|++
T Consensus        72 ~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq~Gr~  150 (257)
T COG5010          72 LATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQLGRF  150 (257)
T ss_pred             HHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHHccCh
Confidence            3444444444444444444322 1  244455557777777777777777777766553 56777777777777777887


Q ss_pred             hhHHHHHHHHHHhCcccchHHHHHHHHHHHhcCChhhhc-----------cchhhHHHHHHHHHhcCChhHHHHHHHHHH
Q 036068           89 DLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ-----------KDKFSWTTMIVGLAISGNGDKALDMFSQML  157 (178)
Q Consensus        89 ~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~-----------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~  157 (178)
                      ++|..-|.+..+... .++...|.+-..|.-.|+.++|.           .|...-+.+.......|++++|..+..+-.
T Consensus       151 ~~Ar~ay~qAl~L~~-~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~~~e~  229 (257)
T COG5010         151 DEARRAYRQALELAP-NEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIAVQEL  229 (257)
T ss_pred             hHHHHHHHHHHHhcc-CCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhccccc
Confidence            777777777766543 24566777777777777777776           366666777777777888888877665544

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=98.27  E-value=2.9e-05  Score=50.59  Aligned_cols=95  Identities=8%  Similarity=-0.014  Sum_probs=83.1

Q ss_pred             HHHHHHHHHHhcCChhHHHHHhccCCC---CChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHHhcc
Q 036068            8 SWTAIVSRYINRGQVDIARQCFDQMPE---RDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARAN   84 (178)
Q Consensus         8 ~~~~li~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~   84 (178)
                      .+..+...+.+.|++++|...|+....   .+...|..+-..+.+.|++++|...|++..+.. +.+...+..+-.++.+
T Consensus        26 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~-p~~~~a~~~lg~~l~~  104 (144)
T PRK15359         26 TVYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD-ASHPEPVYQTGVCLKM  104 (144)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHH
Confidence            355678888999999999999998764   377888999999999999999999999998865 4577889999999999


Q ss_pred             ccchhhHHHHHHHHHHhCc
Q 036068           85 LRALDLGEWIKTYIDKNKV  103 (178)
Q Consensus        85 ~~~~~~a~~~~~~m~~~~~  103 (178)
                      .|++++|...++...+..+
T Consensus       105 ~g~~~eAi~~~~~Al~~~p  123 (144)
T PRK15359        105 MGEPGLAREAFQTAIKMSY  123 (144)
T ss_pred             cCCHHHHHHHHHHHHHhCC
Confidence            9999999999999988753

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=98.22  E-value=2.3e-05  Score=50.20  Aligned_cols=98  Identities=10%  Similarity=0.076  Sum_probs=74.7

Q ss_pred             cchhHHHHHHHHHHhcCChhHHHHHhccCCC---CChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHH
Q 036068            4 KDVISWTAIVSRYINRGQVDIARQCFDQMPE---RDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILT   80 (178)
Q Consensus         4 p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~   80 (178)
                      .+......+...+.+.|++++|.+.|+...+   .+...|..+-..+.+.|++++|...+++..+.+ +.+...+..+-.
T Consensus        15 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~   93 (135)
T TIGR02552        15 EQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAAE   93 (135)
T ss_pred             hhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHH
Confidence            3445566777888888888888888887643   366777788888888888888888888876664 345667777777


Q ss_pred             HhccccchhhHHHHHHHHHHhC
Q 036068           81 ARANLRALDLGEWIKTYIDKNK  102 (178)
Q Consensus        81 ~~~~~~~~~~a~~~~~~m~~~~  102 (178)
                      ++...|++++|...++...+..
T Consensus        94 ~~~~~g~~~~A~~~~~~al~~~  115 (135)
T TIGR02552        94 CLLALGEPESALKALDLAIEIC  115 (135)
T ss_pred             HHHHcCCHHHHHHHHHHHHHhc
Confidence            8888888888888888777764

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=98.17  E-value=0.00012  Score=51.46  Aligned_cols=122  Identities=15%  Similarity=0.085  Sum_probs=103.5

Q ss_pred             cchhHHHHHHHHHHhcCChhHHHHHhccCCC---CChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHH
Q 036068            4 KDVISWTAIVSRYINRGQVDIARQCFDQMPE---RDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILT   80 (178)
Q Consensus         4 p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~   80 (178)
                      .|....+......++.|++..|...|.+...   +|...|+.+-.+|.+.|+.++|..-|.+..+... -+....+.+.-
T Consensus        98 ~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~-~~p~~~nNlgm  176 (257)
T COG5010          98 KDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLGRFDEARRAYRQALELAP-NEPSIANNLGM  176 (257)
T ss_pred             ccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhcc-CCchhhhhHHH
Confidence            3444566688999999999999999998864   4999999999999999999999999999877642 24567777888


Q ss_pred             HhccccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHhcCChhhhc
Q 036068           81 ARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ  127 (178)
Q Consensus        81 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~  127 (178)
                      .+.-.|+++.|..++......+. -+..+-..+.......|+++.|.
T Consensus       177 s~~L~gd~~~A~~lll~a~l~~~-ad~~v~~NLAl~~~~~g~~~~A~  222 (257)
T COG5010         177 SLLLRGDLEDAETLLLPAYLSPA-ADSRVRQNLALVVGLQGDFREAE  222 (257)
T ss_pred             HHHHcCCHHHHHHHHHHHHhCCC-CchHHHHHHHHHHhhcCChHHHH
Confidence            88888999999999988887763 47888899999999999999987

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=98.16  E-value=0.0002  Score=52.00  Aligned_cols=148  Identities=12%  Similarity=0.073  Sum_probs=80.6

Q ss_pred             HHHHHHHhcCChhHHHHHhccCCC---CChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCc----HHHHHHHHHHhc
Q 036068           11 AIVSRYINRGQVDIARQCFDQMPE---RDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGD----EFTIVSILTARA   83 (178)
Q Consensus        11 ~li~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~----~~~~~~ll~~~~   83 (178)
                      .|-.-|...|-+|.|+++|..+.+   --......|+..|-...+|++|+++-.++.+.+-.+.    +..|.-+...+.
T Consensus       112 qL~~Dym~aGl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~  191 (389)
T COG2956         112 QLGRDYMAAGLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQAL  191 (389)
T ss_pred             HHHHHHHHhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHh
Confidence            455667777888888888877654   2556666777777777777777777666655543322    234555555555


Q ss_pred             cccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHhcCChhhhc----------c--chhhHHHHHHHHHhcCChhHHHH
Q 036068           84 NLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ----------K--DKFSWTTMIVGLAISGNGDKALD  151 (178)
Q Consensus        84 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~----------~--~~~~~~~li~~~~~~~~~~~a~~  151 (178)
                      ..++.+.|..+++...+...+ .+..--.+-+.+...|+++.|.          |  -..+...|..+|.+.|+.++...
T Consensus       192 ~~~~~d~A~~~l~kAlqa~~~-cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~  270 (389)
T COG2956         192 ASSDVDRARELLKKALQADKK-CVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLN  270 (389)
T ss_pred             hhhhHHHHHHHHHHHHhhCcc-ceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHH
Confidence            555555555555555444322 1222222233344455555554          1  12233444555555555555555


Q ss_pred             HHHHHHHc
Q 036068          152 MFSQMLRA  159 (178)
Q Consensus       152 ~~~~m~~~  159 (178)
                      .+.++.+.
T Consensus       271 fL~~~~~~  278 (389)
T COG2956         271 FLRRAMET  278 (389)
T ss_pred             HHHHHHHc
Confidence            55554443

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=98.15  E-value=9.1e-05  Score=55.98  Aligned_cols=114  Identities=13%  Similarity=0.063  Sum_probs=93.8

Q ss_pred             HHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHHhccccchhhHHHHHHHHHHhCcccchHHHHHHHHHHH
Q 036068           39 LWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYC  118 (178)
Q Consensus        39 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~  118 (178)
                      .-..|+..+...++++.|..+|+++.+..  |+..  ..+.+.+...++..+|.+++++..+.. +.+...+..-...+.
T Consensus       171 Lv~~Ll~~l~~t~~~~~ai~lle~L~~~~--pev~--~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl  245 (395)
T PF09295_consen  171 LVDTLLKYLSLTQRYDEAIELLEKLRERD--PEVA--VLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLL  245 (395)
T ss_pred             HHHHHHHHHhhcccHHHHHHHHHHHHhcC--CcHH--HHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence            44566777777899999999999998875  6644  447888888888889999998888654 346777777788899


Q ss_pred             hcCChhhhc----------c-chhhHHHHHHHHHhcCChhHHHHHHHHHH
Q 036068          119 ICADVEKAQ----------K-DKFSWTTMIVGLAISGNGDKALDMFSQML  157 (178)
Q Consensus       119 ~~~~~~~a~----------~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~  157 (178)
                      +.++.+.|.          | +..+|..|...|.+.|+++.|+-.++.+.
T Consensus       246 ~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P  295 (395)
T PF09295_consen  246 SKKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCP  295 (395)
T ss_pred             hcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence            999999998          4 57799999999999999999999888775

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.11  E-value=7.7e-05  Score=56.42  Aligned_cols=150  Identities=15%  Similarity=0.082  Sum_probs=127.5

Q ss_pred             hHHHHHHHHHHhcCChhHHHHHhccCCC---CChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHHhc
Q 036068            7 ISWTAIVSRYINRGQVDIARQCFDQMPE---RDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARA   83 (178)
Q Consensus         7 ~~~~~li~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~   83 (178)
                      .|...+.+.|+-.++.++|...|+...+   .....|+.+-+-|....+.+.|.+.+++..+.+ +.|-..|-.+-++|.
T Consensus       331 ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~-p~DyRAWYGLGQaYe  409 (559)
T KOG1155|consen  331 ETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDIN-PRDYRAWYGLGQAYE  409 (559)
T ss_pred             cceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcC-chhHHHHhhhhHHHH
Confidence            3455566777888889999999997654   467789889999999999999999999988876 568889999999999


Q ss_pred             cccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHhcCChhhhc-----------cchhhHHHHHHHHHhcCChhHHHHH
Q 036068           84 NLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ-----------KDKFSWTTMIVGLAISGNGDKALDM  152 (178)
Q Consensus        84 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~-----------~~~~~~~~li~~~~~~~~~~~a~~~  152 (178)
                      -.+...=|.-.|+...+-. +.|+..|.+|-.+|.+.++.++|.           .+...+..|...|-+.++..+|-+.
T Consensus       410 im~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~eAa~~  488 (559)
T KOG1155|consen  410 IMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLNEAAQY  488 (559)
T ss_pred             HhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHHHHHHH
Confidence            8888888888888887765 458999999999999999999998           2447889999999999999999999


Q ss_pred             HHHHHH
Q 036068          153 FSQMLR  158 (178)
Q Consensus       153 ~~~m~~  158 (178)
                      |++-++
T Consensus       489 yek~v~  494 (559)
T KOG1155|consen  489 YEKYVE  494 (559)
T ss_pred             HHHHHH
Confidence            988765

>PRK14574 hmsH outer membrane protein; Provisional

Probab=98.10  E-value=0.00066  Score=56.18  Aligned_cols=109  Identities=12%  Similarity=-0.076  Sum_probs=48.7

Q ss_pred             HHHhcCChhHHHHHhccCCC--C-ChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHHhccccchhhH
Q 036068           15 RYINRGQVDIARQCFDQMPE--R-DYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANLRALDLG   91 (178)
Q Consensus        15 ~~~~~~~~~~a~~~~~~m~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a   91 (178)
                      .+...|++++|.++|+++.+  | |...+..+...+...++.++|++.++++...  .|+...+..++..+...++..+|
T Consensus       111 ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~A  188 (822)
T PRK14574        111 AYRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDA  188 (822)
T ss_pred             HHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHH
Confidence            44444555555555555542  1 3334444445555555555555555554443  23333332222222223333335


Q ss_pred             HHHHHHHHHhCcccchHHHHHHHHHHHhcCChhhh
Q 036068           92 EWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKA  126 (178)
Q Consensus        92 ~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a  126 (178)
                      .+.++.+.+..+ .+...+..++..+.+.|-...|
T Consensus       189 L~~~ekll~~~P-~n~e~~~~~~~~l~~~~~~~~a  222 (822)
T PRK14574        189 LQASSEAVRLAP-TSEEVLKNHLEILQRNRIVEPA  222 (822)
T ss_pred             HHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCcHHH
Confidence            555555555432 1344444444444444444333

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=98.09  E-value=0.00024  Score=45.46  Aligned_cols=110  Identities=14%  Similarity=0.090  Sum_probs=79.0

Q ss_pred             ChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHHhccccchhhHHHHHHHHHHhCcccchHHHHHHHH
Q 036068           36 DYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALID  115 (178)
Q Consensus        36 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~  115 (178)
                      +......+...+.+.|+.++|.+.|++....+ +.+...+..+..++.+.|++++|..+++...+.+..           
T Consensus        16 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~-----------   83 (135)
T TIGR02552        16 QLEQIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPD-----------   83 (135)
T ss_pred             hHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-----------
Confidence            44555666777888889999999998887765 346677778888888888999999888887775432           


Q ss_pred             HHHhcCChhhhccchhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhHHHHHH
Q 036068          116 MYCICADVEKAQKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVL  172 (178)
Q Consensus       116 ~~~~~~~~~~a~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li  172 (178)
                                   +...+..+...+...|++++|...|++..+.  .|+...+..+.
T Consensus        84 -------------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~  125 (135)
T TIGR02552        84 -------------DPRPYFHAAECLLALGEPESALKALDLAIEI--CGENPEYSELK  125 (135)
T ss_pred             -------------ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--ccccchHHHHH
Confidence                         2334455556777788888888888887764  46666544433

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=98.09  E-value=0.00012  Score=50.32  Aligned_cols=107  Identities=12%  Similarity=0.047  Sum_probs=62.2

Q ss_pred             cCChhHHHHHhccCCC---CChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHHh-ccccc--hhhHH
Q 036068           19 RGQVDIARQCFDQMPE---RDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTAR-ANLRA--LDLGE   92 (178)
Q Consensus        19 ~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~-~~~~~--~~~a~   92 (178)
                      .++.+++...+++..+   .|...|..|-..|...|++++|...|++..+.. +-+...+..+..++ .+.|+  .++|.
T Consensus        52 ~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~A~  130 (198)
T PRK10370         52 QQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQTR  130 (198)
T ss_pred             chhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHHHH
Confidence            4444555544444321   366666666666666677777777666666554 22455555555543 44454  36666


Q ss_pred             HHHHHHHHhCcccchHHHHHHHHHHHhcCChhhhc
Q 036068           93 WIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ  127 (178)
Q Consensus        93 ~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~  127 (178)
                      ++++...+..+. ++.++..+-..+.+.|++++|.
T Consensus       131 ~~l~~al~~dP~-~~~al~~LA~~~~~~g~~~~Ai  164 (198)
T PRK10370        131 EMIDKALALDAN-EVTALMLLASDAFMQADYAQAI  164 (198)
T ss_pred             HHHHHHHHhCCC-ChhHHHHHHHHHHHcCCHHHHH
Confidence            666666666543 4556666666666667766664

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=98.09  E-value=0.00018  Score=49.79  Aligned_cols=119  Identities=13%  Similarity=0.029  Sum_probs=103.5

Q ss_pred             HHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHHhccccchhhHHHHHHHHHHhCcccchHHHHHHHHHHH
Q 036068           39 LWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYC  118 (178)
Q Consensus        39 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~  118 (178)
                      +.--|--.|...|+...|..-+++.++.. +-+..++..+...|-+.|+.+.|.+-|+...+..+. +..+.|..=.-+|
T Consensus        37 arlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~-~GdVLNNYG~FLC  114 (250)
T COG3063          37 ARLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPN-NGDVLNNYGAFLC  114 (250)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCC-ccchhhhhhHHHH
Confidence            34556678999999999999999999885 335689999999999999999999999999887744 6778899999999


Q ss_pred             hcCChhhhc-------------cchhhHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 036068          119 ICADVEKAQ-------------KDKFSWTTMIVGLAISGNGDKALDMFSQMLRA  159 (178)
Q Consensus       119 ~~~~~~~a~-------------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~  159 (178)
                      ..|.+++|.             .-..+|..+.-+..+.|+++.|.++|++-++.
T Consensus       115 ~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~  168 (250)
T COG3063         115 AQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALEL  168 (250)
T ss_pred             hCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHh
Confidence            999999997             25678889999999999999999999999875

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.06  E-value=0.00066  Score=51.60  Aligned_cols=168  Identities=17%  Similarity=0.112  Sum_probs=100.2

Q ss_pred             cchhHHHHHHHHHHhcCChhHHHHHhccCCC---CChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHH
Q 036068            4 KDVISWTAIVSRYINRGQVDIARQCFDQMPE---RDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILT   80 (178)
Q Consensus         4 p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~   80 (178)
                      .....|+.+-+-|....+...|.+-++...+   .|-..|--|-.+|.-.+...-|+-.|++-.... +-|...|.+|-+
T Consensus       362 ~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~  440 (559)
T KOG1155|consen  362 KYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVALGE  440 (559)
T ss_pred             chhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHH
Confidence            3455677777778888888887777776543   366666666777776666666776666665543 335566777777


Q ss_pred             HhccccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHhcCChhhhc---------------cchhhH---HHHHHHHHh
Q 036068           81 ARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ---------------KDKFSW---TTMIVGLAI  142 (178)
Q Consensus        81 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~---------------~~~~~~---~~li~~~~~  142 (178)
                      +|.+.+++++|++.|......|- .....+..|-..|-+.++.++|.               .+..|.   --|...+-+
T Consensus       441 CY~kl~~~~eAiKCykrai~~~d-te~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k  519 (559)
T KOG1155|consen  441 CYEKLNRLEEAIKCYKRAILLGD-TEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKK  519 (559)
T ss_pred             HHHHhccHHHHHHHHHHHHhccc-cchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHh
Confidence            77777777777777766666552 24455666666666666666664               111111   113355556


Q ss_pred             cCChhHHHHHHHHHHHcCCCCChhHHHHHHhhh
Q 036068          143 SGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC  175 (178)
Q Consensus       143 ~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~a~  175 (178)
                      .+++++|..+..+... | .+..+--..|++.+
T Consensus       520 ~~~~~~As~Ya~~~~~-~-~~e~eeak~LlRei  550 (559)
T KOG1155|consen  520 MKDFDEASYYATLVLK-G-ETECEEAKALLREI  550 (559)
T ss_pred             hcchHHHHHHHHHHhc-C-CchHHHHHHHHHHH
Confidence            6666666655544333 2 44444444444433

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=98.03  E-value=0.0011  Score=49.59  Aligned_cols=153  Identities=11%  Similarity=0.036  Sum_probs=104.3

Q ss_pred             hHHHHHHHHHHhcCChhHHHHHhccCCC---CChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCC-CCcH--HHHHHHHH
Q 036068            7 ISWTAIVSRYINRGQVDIARQCFDQMPE---RDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNI-MGDE--FTIVSILT   80 (178)
Q Consensus         7 ~~~~~li~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~-~~~~--~~~~~ll~   80 (178)
                      .....+...+...|++++|.+.+++..+   .+...+..+-..+...|++++|...+++.....- .|+.  ..|..+..
T Consensus       115 ~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~  194 (355)
T cd05804         115 YLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLAL  194 (355)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHH
Confidence            3444566788899999999999998764   3566788888899999999999999999776532 2232  34567888


Q ss_pred             HhccccchhhHHHHHHHHHHhCc-ccchHHH-H--HHHHHHHhcCChhhhc----------cc----hhhHH--HHHHHH
Q 036068           81 ARANLRALDLGEWIKTYIDKNKV-KNDIFAG-N--ALIDMYCICADVEKAQ----------KD----KFSWT--TMIVGL  140 (178)
Q Consensus        81 ~~~~~~~~~~a~~~~~~m~~~~~-~~~~~~~-~--~ll~~~~~~~~~~~a~----------~~----~~~~~--~li~~~  140 (178)
                      .+...|++++|..+++....... .+..... +  .++..+...|....+.          +.    ...++  ....++
T Consensus       195 ~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~  274 (355)
T cd05804         195 FYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALAL  274 (355)
T ss_pred             HHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHH
Confidence            89999999999999999864433 1222211 1  2233333344222211          11    11122  566777


Q ss_pred             HhcCChhHHHHHHHHHHHc
Q 036068          141 AISGNGDKALDMFSQMLRA  159 (178)
Q Consensus       141 ~~~~~~~~a~~~~~~m~~~  159 (178)
                      ...|+.+.|..+++.+...
T Consensus       275 ~~~~~~~~a~~~L~~l~~~  293 (355)
T cd05804         275 AGAGDKDALDKLLAALKGR  293 (355)
T ss_pred             hcCCCHHHHHHHHHHHHHH
Confidence            8899999999999998764

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=98.03  E-value=6.7e-05  Score=43.88  Aligned_cols=93  Identities=12%  Similarity=0.115  Sum_probs=68.6

Q ss_pred             HHHHHHHHHHhcCChhHHHHHhccCCC---CChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHHhcc
Q 036068            8 SWTAIVSRYINRGQVDIARQCFDQMPE---RDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARAN   84 (178)
Q Consensus         8 ~~~~li~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~   84 (178)
                      +|..+...+...|++++|...+++..+   .+...+..+...+...+++++|.+.|++..... ..+..++..+...+..
T Consensus         2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~   80 (100)
T cd00189           2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYYK   80 (100)
T ss_pred             HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHH
Confidence            355677778888888888888887653   244567777778888888888888888877654 2344577777788888


Q ss_pred             ccchhhHHHHHHHHHHh
Q 036068           85 LRALDLGEWIKTYIDKN  101 (178)
Q Consensus        85 ~~~~~~a~~~~~~m~~~  101 (178)
                      .|++++|...+....+.
T Consensus        81 ~~~~~~a~~~~~~~~~~   97 (100)
T cd00189          81 LGKYEEALEAYEKALEL   97 (100)
T ss_pred             HHhHHHHHHHHHHHHcc
Confidence            88888888888776554

>PRK11189 lipoprotein NlpI; Provisional

Probab=98.02  E-value=0.0012  Score=48.36  Aligned_cols=93  Identities=12%  Similarity=-0.030  Sum_probs=47.4

Q ss_pred             HHHHHHHHHhcCChhHHHHHhccCCC---CChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHHhccc
Q 036068            9 WTAIVSRYINRGQVDIARQCFDQMPE---RDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANL   85 (178)
Q Consensus         9 ~~~li~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~   85 (178)
                      |..+-..+.+.|++++|...|++..+   .+...|+.+-..+...|++++|.+.|++..+.. +-+..++..+..++...
T Consensus        67 ~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~  145 (296)
T PRK11189         67 HYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELD-PTYNYAYLNRGIALYYG  145 (296)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHC
Confidence            44444455555555555555554432   244455555555555555555555555555432 11234444444555555


Q ss_pred             cchhhHHHHHHHHHHhC
Q 036068           86 RALDLGEWIKTYIDKNK  102 (178)
Q Consensus        86 ~~~~~a~~~~~~m~~~~  102 (178)
                      |++++|.+.++...+..
T Consensus       146 g~~~eA~~~~~~al~~~  162 (296)
T PRK11189        146 GRYELAQDDLLAFYQDD  162 (296)
T ss_pred             CCHHHHHHHHHHHHHhC
Confidence            55555555555555443

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.00  E-value=0.00014  Score=55.39  Aligned_cols=152  Identities=12%  Similarity=0.065  Sum_probs=96.0

Q ss_pred             chhHHHHHHHHHHhcCChhHHHHHhccCCC---CChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHH
Q 036068            5 DVISWTAIVSRYINRGQVDIARQCFDQMPE---RDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTA   81 (178)
Q Consensus         5 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~   81 (178)
                      |+.+|..--....-.+++++|..=|++..+   .++..|--+-.+.-+.+.+++++..|++.+++ .+-.+..|+.....
T Consensus       393 n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAei  471 (606)
T KOG0547|consen  393 NPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEI  471 (606)
T ss_pred             CCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHH
Confidence            444555555555555666666666665543   24455555555555667777777777776654 34456677777777


Q ss_pred             hccccchhhHHHHHHHHHHhCcc-------cchHHHHHHHHHHHhcCChhhhc-----------cchhhHHHHHHHHHhc
Q 036068           82 RANLRALDLGEWIKTYIDKNKVK-------NDIFAGNALIDMYCICADVEKAQ-----------KDKFSWTTMIVGLAIS  143 (178)
Q Consensus        82 ~~~~~~~~~a~~~~~~m~~~~~~-------~~~~~~~~ll~~~~~~~~~~~a~-----------~~~~~~~~li~~~~~~  143 (178)
                      +...++++.|.+.|+..++....       +.+.+.-.++ .+...+++..|.           .....|..|...-.++
T Consensus       472 LtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l-~~qwk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~  550 (606)
T KOG0547|consen  472 LTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALL-VLQWKEDINQAENLLRKAIELDPKCEQAYETLAQFELQR  550 (606)
T ss_pred             HhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHh-hhchhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHH
Confidence            77888888888877766654322       2222222222 222445555554           3577888888999999


Q ss_pred             CChhHHHHHHHHHHH
Q 036068          144 GNGDKALDMFSQMLR  158 (178)
Q Consensus       144 ~~~~~a~~~~~~m~~  158 (178)
                      |+.++|+++|++-..
T Consensus       551 ~~i~eAielFEksa~  565 (606)
T KOG0547|consen  551 GKIDEAIELFEKSAQ  565 (606)
T ss_pred             hhHHHHHHHHHHHHH
Confidence            999999999987653

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=98.00  E-value=0.00085  Score=43.69  Aligned_cols=122  Identities=8%  Similarity=0.013  Sum_probs=69.4

Q ss_pred             HHHHHHHHHHhcCChhHHHHHhccCCCCChh------HHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcH--HHHHHHH
Q 036068            8 SWTAIVSRYINRGQVDIARQCFDQMPERDYV------LWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDE--FTIVSIL   79 (178)
Q Consensus         8 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~------~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~--~~~~~ll   79 (178)
                      .|..++..+ ..++.+.+...++.+.+....      ..-.+-..+...|++++|...|+........|+.  .....+.
T Consensus        14 ~y~~~~~~~-~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA   92 (145)
T PF09976_consen   14 LYEQALQAL-QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLA   92 (145)
T ss_pred             HHHHHHHHH-HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHH
Confidence            455555555 366777766666666542111      1222335566677777777777777666522221  2333455


Q ss_pred             HHhccccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHhcCChhhhccchhhHHHHHHHHHhcCChhHHHHHHHH
Q 036068           80 TARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQKDKFSWTTMIVGLAISGNGDKALDMFSQ  155 (178)
Q Consensus        80 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~li~~~~~~~~~~~a~~~~~~  155 (178)
                      ..+...|++++|...++......+                         ....+...-..+.+.|+.++|...|++
T Consensus        93 ~~~~~~~~~d~Al~~L~~~~~~~~-------------------------~~~~~~~~Gdi~~~~g~~~~A~~~y~~  143 (145)
T PF09976_consen   93 RILLQQGQYDEALATLQQIPDEAF-------------------------KALAAELLGDIYLAQGDYDEARAAYQK  143 (145)
T ss_pred             HHHHHcCCHHHHHHHHHhccCcch-------------------------HHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence            666677777777777644221111                         122344556777888888888888875

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=97.99  E-value=0.00015  Score=45.01  Aligned_cols=98  Identities=9%  Similarity=0.018  Sum_probs=77.8

Q ss_pred             hHHHHHHHHHHhcCChhHHHHHhccCCC--CC----hhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCC--CcHHHHHHH
Q 036068            7 ISWTAIVSRYINRGQVDIARQCFDQMPE--RD----YVLWTAMIDGYLRVNRFREALTLFQEMQTSNIM--GDEFTIVSI   78 (178)
Q Consensus         7 ~~~~~li~~~~~~~~~~~a~~~~~~m~~--~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~--~~~~~~~~l   78 (178)
                      .++-.+...+.+.|++++|.+.|+++.+  |+    ...+..+...+.+.|++++|.+.|++.....-.  .....+..+
T Consensus         3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~   82 (119)
T TIGR02795         3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKL   82 (119)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHH
Confidence            4566778888999999999999998864  32    345666888999999999999999998765311  124567778


Q ss_pred             HHHhccccchhhHHHHHHHHHHhCcc
Q 036068           79 LTARANLRALDLGEWIKTYIDKNKVK  104 (178)
Q Consensus        79 l~~~~~~~~~~~a~~~~~~m~~~~~~  104 (178)
                      ..++.+.+++++|.+.++.+.+..+.
T Consensus        83 ~~~~~~~~~~~~A~~~~~~~~~~~p~  108 (119)
T TIGR02795        83 GMSLQELGDKEKAKATLQQVIKRYPG  108 (119)
T ss_pred             HHHHHHhCChHHHHHHHHHHHHHCcC
Confidence            88889999999999999999988643

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=97.94  E-value=0.00018  Score=52.44  Aligned_cols=147  Identities=13%  Similarity=0.040  Sum_probs=118.6

Q ss_pred             HHHHHHHHhcCChhHHHHHhccCC--CCChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHH-HHHHHHhcccc
Q 036068           10 TAIVSRYINRGQVDIARQCFDQMP--ERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTI-VSILTARANLR   86 (178)
Q Consensus        10 ~~li~~~~~~~~~~~a~~~~~~m~--~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~-~~ll~~~~~~~   86 (178)
                      +.+-++|.+-|.+.+|...|+.-.  .|-+.||-.|-..|.+..+.+.|+.++.+-.+.  .|-.+|| .-+.+.+-..+
T Consensus       227 ~Q~gkCylrLgm~r~AekqlqssL~q~~~~dTfllLskvY~ridQP~~AL~~~~~gld~--fP~~VT~l~g~ARi~eam~  304 (478)
T KOG1129|consen  227 QQMGKCYLRLGMPRRAEKQLQSSLTQFPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS--FPFDVTYLLGQARIHEAME  304 (478)
T ss_pred             HHHHHHHHHhcChhhhHHHHHHHhhcCCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc--CCchhhhhhhhHHHHHHHH
Confidence            457788999999999999988654  468889999999999999999999999887665  4555554 45666777788


Q ss_pred             chhhHHHHHHHHHHhCcccchHHHHHHHHHHHhcCChhhhc-----------cchhhHHHHHHHHHhcCChhHHHHHHHH
Q 036068           87 ALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ-----------KDKFSWTTMIVGLAISGNGDKALDMFSQ  155 (178)
Q Consensus        87 ~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~-----------~~~~~~~~li~~~~~~~~~~~a~~~~~~  155 (178)
                      +.+++.++|+...+.. +.++.....+-.+|.-.++.+-|.           .+...|+.+--+|...+++|-++.-|.+
T Consensus       305 ~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~D~~L~sf~R  383 (478)
T KOG1129|consen  305 QQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQIDLVLPSFQR  383 (478)
T ss_pred             hHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcchhhhHHHHHH
Confidence            8999999999988875 345666677777888888888887           4788888888888889999999998888


Q ss_pred             HHHc
Q 036068          156 MLRA  159 (178)
Q Consensus       156 m~~~  159 (178)
                      .+..
T Consensus       384 Alst  387 (478)
T KOG1129|consen  384 ALST  387 (478)
T ss_pred             HHhh
Confidence            7754

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=97.90  E-value=0.00035  Score=50.88  Aligned_cols=119  Identities=13%  Similarity=0.091  Sum_probs=81.2

Q ss_pred             HHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHHhccccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHh----c
Q 036068           45 DGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCI----C  120 (178)
Q Consensus        45 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~----~  120 (178)
                      ..+...|++++|++++.+-      .+.......+..+.+.++++.|.+.++.|.+..   +..+...+..++..    .
T Consensus       110 ~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~---eD~~l~qLa~awv~l~~g~  180 (290)
T PF04733_consen  110 TILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQID---EDSILTQLAEAWVNLATGG  180 (290)
T ss_dssp             HHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCS---CCHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcC---CcHHHHHHHHHHHHHHhCc
Confidence            4556678888888776542      355666778889999999999999999998754   23444445544443    3


Q ss_pred             CChhhhc-----------cchhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhHHHHHHh
Q 036068          121 ADVEKAQ-----------KDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLS  173 (178)
Q Consensus       121 ~~~~~a~-----------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~  173 (178)
                      +.+.+|.           +++.+.|.+..+....|++++|.+++.+..+.+ +-+..|...++-
T Consensus       181 e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~-~~~~d~LaNliv  243 (290)
T PF04733_consen  181 EKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKD-PNDPDTLANLIV  243 (290)
T ss_dssp             TCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC--CCHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc-cCCHHHHHHHHH
Confidence            3566665           577888889999999999999999999977532 223444444443

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=97.90  E-value=0.00079  Score=48.87  Aligned_cols=142  Identities=11%  Similarity=0.116  Sum_probs=82.1

Q ss_pred             hHHHHHHHHHHhcCChhHHHHHhccCCCCChhHHH-----HHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHH
Q 036068            7 ISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWT-----AMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTA   81 (178)
Q Consensus         7 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~-----~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~   81 (178)
                      .+|..+++..-+.+.++.|..+|.+..+....+|.     ++|+.+ ..++.+.|..+|+...+. ...+...|...++.
T Consensus         2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~-~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~   79 (280)
T PF05843_consen    2 LVWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYY-CNKDPKRARKIFERGLKK-FPSDPDFWLEYLDF   79 (280)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHH-TCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH-hCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHH
Confidence            45666666666666677777777766543222222     222222 124445577777766554 33455566666666


Q ss_pred             hccccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHhcCChhhhccchhhHHHHHHHHHhcCChhHHHHHHHHHHHcCC
Q 036068           82 RANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASI  161 (178)
Q Consensus        82 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~  161 (178)
                      +.+.++.+.+..+|+..... +.+...                    ....|...+.--.+.|+.+.+..+.+++.+.  
T Consensus        80 l~~~~d~~~aR~lfer~i~~-l~~~~~--------------------~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~--  136 (280)
T PF05843_consen   80 LIKLNDINNARALFERAISS-LPKEKQ--------------------SKKIWKKFIEFESKYGDLESVRKVEKRAEEL--  136 (280)
T ss_dssp             HHHTT-HHHHHHHHHHHCCT-SSCHHH--------------------CHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH--
T ss_pred             HHHhCcHHHHHHHHHHHHHh-cCchhH--------------------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--
Confidence            66667777777777666554 222111                    2346778888888888999999999888874  


Q ss_pred             CCChhHHHHHHh
Q 036068          162 KPDEVAYVGVLS  173 (178)
Q Consensus       162 ~p~~~t~~~li~  173 (178)
                      .|+...+..+++
T Consensus       137 ~~~~~~~~~f~~  148 (280)
T PF05843_consen  137 FPEDNSLELFSD  148 (280)
T ss_dssp             TTTS-HHHHHHC
T ss_pred             hhhhhHHHHHHH
Confidence            555555555544

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=97.90  E-value=0.00082  Score=54.63  Aligned_cols=122  Identities=5%  Similarity=-0.044  Sum_probs=96.3

Q ss_pred             cchhHHHHHHHHHHhcCChhHHHHHhccCCC--C-ChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHH
Q 036068            4 KDVISWTAIVSRYINRGQVDIARQCFDQMPE--R-DYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILT   80 (178)
Q Consensus         4 p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~   80 (178)
                      .++..+-.|.+...+.|++++|..+++...+  | +......+...+.+.+++++|....++..... +-+......+-.
T Consensus        84 ~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~-p~~~~~~~~~a~  162 (694)
T PRK15179         84 HTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGG-SSSAREILLEAK  162 (694)
T ss_pred             ccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC-CCCHHHHHHHHH
Confidence            3466777888888899999999999988764  4 55667778888889999999999999988875 225566677777


Q ss_pred             HhccccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHhcCChhhhc
Q 036068           81 ARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ  127 (178)
Q Consensus        81 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~  127 (178)
                      ++.+.|++++|..+|+++...+. -+..++..+-..+-+.|+.++|.
T Consensus       163 ~l~~~g~~~~A~~~y~~~~~~~p-~~~~~~~~~a~~l~~~G~~~~A~  208 (694)
T PRK15179        163 SWDEIGQSEQADACFERLSRQHP-EFENGYVGWAQSLTRRGALWRAR  208 (694)
T ss_pred             HHHHhcchHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHcCCHHHHH
Confidence            88899999999999999888443 24777778888888888888875

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=97.88  E-value=0.0018  Score=52.82  Aligned_cols=153  Identities=10%  Similarity=0.067  Sum_probs=99.8

Q ss_pred             cchhHHHHHHHHHHhcCChhHHHHHhccCCC---CChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHH
Q 036068            4 KDVISWTAIVSRYINRGQVDIARQCFDQMPE---RDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILT   80 (178)
Q Consensus         4 p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~   80 (178)
                      |.+...-.......-.|++++|.+++.+..+   .+...|-+|-..|...|+.+++...+-..-.. .+-|..-|..+-.
T Consensus       137 ~~l~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL-~p~d~e~W~~lad  215 (895)
T KOG2076|consen  137 PELRQLLGEANNLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHL-NPKDYELWKRLAD  215 (895)
T ss_pred             HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhc-CCCChHHHHHHHH
Confidence            4444444444445556999999999998865   37778999999999999999988766443322 2335567777777


Q ss_pred             HhccccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHhcCChhhhc----------c--chh----hHHHHHHHHHhcC
Q 036068           81 ARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ----------K--DKF----SWTTMIVGLAISG  144 (178)
Q Consensus        81 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~----------~--~~~----~~~~li~~~~~~~  144 (178)
                      -..+.|++++|.-+|.+.++..++ +....---...|-+.|+...|.          |  |..    .-...+..+-..+
T Consensus       216 ls~~~~~i~qA~~cy~rAI~~~p~-n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~  294 (895)
T KOG2076|consen  216 LSEQLGNINQARYCYSRAIQANPS-NWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHN  294 (895)
T ss_pred             HHHhcccHHHHHHHHHHHHhcCCc-chHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhh
Confidence            788888888888888888887644 3333333455677788887776          2  111    1122334444555


Q ss_pred             ChhHHHHHHHHHHH
Q 036068          145 NGDKALDMFSQMLR  158 (178)
Q Consensus       145 ~~~~a~~~~~~m~~  158 (178)
                      +.+.|.+.++....
T Consensus       295 ~~e~a~~~le~~~s  308 (895)
T KOG2076|consen  295 ERERAAKALEGALS  308 (895)
T ss_pred             HHHHHHHHHHHHHh
Confidence            55666666665554

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=97.88  E-value=0.00078  Score=50.30  Aligned_cols=143  Identities=10%  Similarity=0.049  Sum_probs=97.0

Q ss_pred             HHHHHhcCChhHHHHHhccCCC--C-ChhHHHHHHHHHh----hcCChhHHHHHHHHhHhCCCCCcH-HHHHHHHHHhcc
Q 036068           13 VSRYINRGQVDIARQCFDQMPE--R-DYVLWTAMIDGYL----RVNRFREALTLFQEMQTSNIMGDE-FTIVSILTARAN   84 (178)
Q Consensus        13 i~~~~~~~~~~~a~~~~~~m~~--~-~~~~~~~li~~~~----~~~~~~~a~~~~~~m~~~~~~~~~-~~~~~ll~~~~~   84 (178)
                      ...+...|++++|.+.+++..+  | |...+.. ...+.    ..+..+.+.+.+..  .....|+. .....+...+..
T Consensus        50 a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~a~~~~~  126 (355)
T cd05804          50 ALSAWIAGDLPKALALLEQLLDDYPRDLLALKL-HLGAFGLGDFSGMRDHVARVLPL--WAPENPDYWYLLGMLAFGLEE  126 (355)
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHH-hHHHHHhcccccCchhHHHHHhc--cCcCCCCcHHHHHHHHHHHHH
Confidence            3345678899999888887543  3 3334432 21222    23445555555554  22223433 344456667889


Q ss_pred             ccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHhcCChhhhc----------c---c--hhhHHHHHHHHHhcCChhHH
Q 036068           85 LRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ----------K---D--KFSWTTMIVGLAISGNGDKA  149 (178)
Q Consensus        85 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~----------~---~--~~~~~~li~~~~~~~~~~~a  149 (178)
                      .|++++|.+.++...+..+ .+...+..+-..|...|++++|.          |   +  ...|-.+...+...|++++|
T Consensus       127 ~G~~~~A~~~~~~al~~~p-~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A  205 (355)
T cd05804         127 AGQYDRAEEAARRALELNP-DDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAA  205 (355)
T ss_pred             cCCHHHHHHHHHHHHhhCC-CCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHH
Confidence            9999999999999988764 35777888888899999999987          2   1  12344677888999999999


Q ss_pred             HHHHHHHHHc
Q 036068          150 LDMFSQMLRA  159 (178)
Q Consensus       150 ~~~~~~m~~~  159 (178)
                      ..++++....
T Consensus       206 ~~~~~~~~~~  215 (355)
T cd05804         206 LAIYDTHIAP  215 (355)
T ss_pred             HHHHHHHhcc
Confidence            9999998643

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=97.86  E-value=0.0004  Score=51.25  Aligned_cols=104  Identities=14%  Similarity=0.181  Sum_probs=78.4

Q ss_pred             HHHHHHHHHHhcCChhHHHHHhccCCCCChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHHhccccc
Q 036068            8 SWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANLRA   87 (178)
Q Consensus         8 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~   87 (178)
                      +.+..|.-+...|+...|..+-.+.+-|+...|-.-+.+++..++|++-.++-+.   .   -++.-|-.++.+|.+.|+
T Consensus       179 Sl~~Ti~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s---k---KsPIGyepFv~~~~~~~~  252 (319)
T PF04840_consen  179 SLNDTIRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS---K---KSPIGYEPFVEACLKYGN  252 (319)
T ss_pred             CHHHHHHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC---C---CCCCChHHHHHHHHHCCC
Confidence            4455677788888888888888888888888888888999988888887765432   1   234678888888888888


Q ss_pred             hhhHHHHHHHHHHhCcccchHHHHHHHHHHHhcCChhhhc
Q 036068           88 LDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ  127 (178)
Q Consensus        88 ~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~  127 (178)
                      ..+|..+...     +     .+..-+..|.++|++.+|.
T Consensus       253 ~~eA~~yI~k-----~-----~~~~rv~~y~~~~~~~~A~  282 (319)
T PF04840_consen  253 KKEASKYIPK-----I-----PDEERVEMYLKCGDYKEAA  282 (319)
T ss_pred             HHHHHHHHHh-----C-----ChHHHHHHHHHCCCHHHHH
Confidence            8888877655     1     1256677788888877763

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=97.83  E-value=0.00057  Score=39.76  Aligned_cols=95  Identities=12%  Similarity=0.094  Sum_probs=70.5

Q ss_pred             HHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHHhccccchhhHHHHHHHHHHhCcccchHHHHHHHHHHH
Q 036068           39 LWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYC  118 (178)
Q Consensus        39 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~  118 (178)
                      .+..+...+...|++++|...+++..+.. +.+...+..+..++...+++++|.+.++...+..... .           
T Consensus         2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~-~-----------   68 (100)
T cd00189           2 ALLNLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDN-A-----------   68 (100)
T ss_pred             HHHHHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcc-h-----------
Confidence            34556777888999999999999987764 2344677778888889999999999998887765332 2           


Q ss_pred             hcCChhhhccchhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 036068          119 ICADVEKAQKDKFSWTTMIVGLAISGNGDKALDMFSQMLR  158 (178)
Q Consensus       119 ~~~~~~~a~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~  158 (178)
                                  ..+..+...+...|+.++|...+.+..+
T Consensus        69 ------------~~~~~~~~~~~~~~~~~~a~~~~~~~~~   96 (100)
T cd00189          69 ------------KAYYNLGLAYYKLGKYEEALEAYEKALE   96 (100)
T ss_pred             ------------hHHHHHHHHHHHHHhHHHHHHHHHHHHc
Confidence                        2345566666777777888888777664

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=97.79  E-value=0.0049  Score=47.16  Aligned_cols=154  Identities=12%  Similarity=0.014  Sum_probs=112.4

Q ss_pred             CcchhHHHHHHHHHHhcCChhHHHHHhccCCC--CChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHH
Q 036068            3 NKDVISWTAIVSRYINRGQVDIARQCFDQMPE--RDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILT   80 (178)
Q Consensus         3 ~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~   80 (178)
                      .|+...+...+.+......-..+..++.+-.+  ....-|..-+..| ..|..++|...++.+.... +-|..-......
T Consensus       271 ~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~aa~YG~A~~~~-~~~~~d~A~~~l~~L~~~~-P~N~~~~~~~~~  348 (484)
T COG4783         271 SPDFQLARARIRAKYEALPNQQAADLLAKRSKRGGLAAQYGRALQTY-LAGQYDEALKLLQPLIAAQ-PDNPYYLELAGD  348 (484)
T ss_pred             CccHHHHHHHHHHHhccccccchHHHHHHHhCccchHHHHHHHHHHH-HhcccchHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence            35555556555555444433333333333222  2444555555544 5678999999999987763 345666667778


Q ss_pred             HhccccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHhcCChhhhc-----------cchhhHHHHHHHHHhcCChhHH
Q 036068           81 ARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ-----------KDKFSWTTMIVGLAISGNGDKA  149 (178)
Q Consensus        81 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~-----------~~~~~~~~li~~~~~~~~~~~a  149 (178)
                      .+.+.++.++|.+.++.+....+.. ....-.+-..|.+.|++.+|.           .|...|..|..+|...|+..++
T Consensus       349 i~~~~nk~~~A~e~~~kal~l~P~~-~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a  427 (484)
T COG4783         349 ILLEANKAKEAIERLKKALALDPNS-PLLQLNLAQALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEA  427 (484)
T ss_pred             HHHHcCChHHHHHHHHHHHhcCCCc-cHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHH
Confidence            8999999999999999998875432 677778888999999999987           4899999999999999999999


Q ss_pred             HHHHHHHHHc
Q 036068          150 LDMFSQMLRA  159 (178)
Q Consensus       150 ~~~~~~m~~~  159 (178)
                      ..-..++...
T Consensus       428 ~~A~AE~~~~  437 (484)
T COG4783         428 LLARAEGYAL  437 (484)
T ss_pred             HHHHHHHHHh
Confidence            9988887653

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=97.76  E-value=0.00082  Score=43.76  Aligned_cols=23  Identities=13%  Similarity=-0.130  Sum_probs=10.7

Q ss_pred             HHhccccchhhHHHHHHHHHHhC
Q 036068           80 TARANLRALDLGEWIKTYIDKNK  102 (178)
Q Consensus        80 ~~~~~~~~~~~a~~~~~~m~~~~  102 (178)
                      ..+...|++++|...|+......
T Consensus        56 ~~~~~~g~~~~A~~~l~~~~~~~   78 (145)
T PF09976_consen   56 KAAYEQGDYDEAKAALEKALANA   78 (145)
T ss_pred             HHHHHCCCHHHHHHHHHHHHhhC
Confidence            34444444444444444444433

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=97.76  E-value=0.0022  Score=39.69  Aligned_cols=101  Identities=12%  Similarity=-0.014  Sum_probs=74.5

Q ss_pred             hHHHHHHHHHhhcCChhHHHHHHHHhHhCCC--CCcHHHHHHHHHHhccccchhhHHHHHHHHHHhCcccchHHHHHHHH
Q 036068           38 VLWTAMIDGYLRVNRFREALTLFQEMQTSNI--MGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALID  115 (178)
Q Consensus        38 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~--~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~  115 (178)
                      .++-.+...+.+.|++++|.+.|+++.+..-  ......+..+..++.+.|++++|.+.++.+.+.......        
T Consensus         3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~--------   74 (119)
T TIGR02795         3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPK--------   74 (119)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCc--------
Confidence            3556677788899999999999999876531  111346667888999999999999999998876432110        


Q ss_pred             HHHhcCChhhhccchhhHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 036068          116 MYCICADVEKAQKDKFSWTTMIVGLAISGNGDKALDMFSQMLRA  159 (178)
Q Consensus       116 ~~~~~~~~~~a~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~  159 (178)
                                   ....+..+...+.+.|+.++|...++++.+.
T Consensus        75 -------------~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~  105 (119)
T TIGR02795        75 -------------APDALLKLGMSLQELGDKEKAKATLQQVIKR  105 (119)
T ss_pred             -------------ccHHHHHHHHHHHHhCChHHHHHHHHHHHHH
Confidence                         1123445556677889999999999999876

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=97.73  E-value=0.0013  Score=51.59  Aligned_cols=93  Identities=13%  Similarity=0.138  Sum_probs=62.4

Q ss_pred             HHHHHHHHhcCChhHHHHHhccCCC--CC-hhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHHhcccc
Q 036068           10 TAIVSRYINRGQVDIARQCFDQMPE--RD-YVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANLR   86 (178)
Q Consensus        10 ~~li~~~~~~~~~~~a~~~~~~m~~--~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~   86 (178)
                      .-+...|-..|++++|++.+++..+  |+ +..|.+--+.|-..|++++|.+.++....... -|...-+.....+.+.|
T Consensus       198 ~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~-~DRyiNsK~aKy~LRa~  276 (517)
T PF12569_consen  198 YFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDL-ADRYINSKCAKYLLRAG  276 (517)
T ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCh-hhHHHHHHHHHHHHHCC
Confidence            4455666677777777777776553  32 44566666677777777777777777666653 36666666677777777


Q ss_pred             chhhHHHHHHHHHHhCc
Q 036068           87 ALDLGEWIKTYIDKNKV  103 (178)
Q Consensus        87 ~~~~a~~~~~~m~~~~~  103 (178)
                      +.++|.+++....+.+.
T Consensus       277 ~~e~A~~~~~~Ftr~~~  293 (517)
T PF12569_consen  277 RIEEAEKTASLFTREDV  293 (517)
T ss_pred             CHHHHHHHHHhhcCCCC
Confidence            77777777777766554

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=97.71  E-value=0.0016  Score=48.99  Aligned_cols=86  Identities=10%  Similarity=0.024  Sum_probs=40.9

Q ss_pred             HHHhcCChhHHHHHhccCCC---CChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHHhccccchhhH
Q 036068           15 RYINRGQVDIARQCFDQMPE---RDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANLRALDLG   91 (178)
Q Consensus        15 ~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a   91 (178)
                      .....|++++|++.|++..+   .+...|..+-.+|.+.|++++|+..+++..+.. +.+...|..+-.+|.+.|++++|
T Consensus        11 ~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg~~~eA   89 (356)
T PLN03088         11 EAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLEEYQTA   89 (356)
T ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCCHHHH
Confidence            33444555555555554432   133444444445555555555555555554432 12334444444455555555555


Q ss_pred             HHHHHHHHHh
Q 036068           92 EWIKTYIDKN  101 (178)
Q Consensus        92 ~~~~~~m~~~  101 (178)
                      ...|+...+.
T Consensus        90 ~~~~~~al~l   99 (356)
T PLN03088         90 KAALEKGASL   99 (356)
T ss_pred             HHHHHHHHHh
Confidence            5555554443

>PLN02789 farnesyltranstransferase

Probab=97.71  E-value=0.0081  Score=44.49  Aligned_cols=167  Identities=8%  Similarity=0.021  Sum_probs=108.6

Q ss_pred             HHHHHHHHHHhcC-ChhHHHHHhccCCC---CChhHHHHHHHHHhhcCCh--hHHHHHHHHhHhCCCCCcHHHHHHHHHH
Q 036068            8 SWTAIVSRYINRG-QVDIARQCFDQMPE---RDYVLWTAMIDGYLRVNRF--REALTLFQEMQTSNIMGDEFTIVSILTA   81 (178)
Q Consensus         8 ~~~~li~~~~~~~-~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~~--~~a~~~~~~m~~~~~~~~~~~~~~ll~~   81 (178)
                      +|+..-..+...| ++++++.+++++.+   ++..+|+.--..+.+.|+.  +++.++++++.+..- -|..+|+-.--+
T Consensus        73 aW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~dp-kNy~AW~~R~w~  151 (320)
T PLN02789         73 VWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILSLDA-KNYHAWSHRQWV  151 (320)
T ss_pred             HHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhCc-ccHHHHHHHHHH
Confidence            4555545555556 56777877776653   3555666554445555542  567778878777653 366777777777


Q ss_pred             hccccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHhc---CChh----hhc-----------cchhhHHHHHHHHHhc
Q 036068           82 RANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC---ADVE----KAQ-----------KDKFSWTTMIVGLAIS  143 (178)
Q Consensus        82 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~---~~~~----~a~-----------~~~~~~~~li~~~~~~  143 (178)
                      +.+.|+++++.+.++.+++.++. +...|+..-..+.+.   |..+    ...           .|...|+.+...+...
T Consensus       152 l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~  230 (320)
T PLN02789        152 LRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANPRNESPWRYLRGLFKDD  230 (320)
T ss_pred             HHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcC
Confidence            77888899999999999888754 566777666555544   2222    111           4788888888888773


Q ss_pred             ----CChhHHHHHHHHHHHcCCCCChhHHHHHHhhhhc
Q 036068          144 ----GNGDKALDMFSQMLRASIKPDEVAYVGVLSACTH  177 (178)
Q Consensus       144 ----~~~~~a~~~~~~m~~~g~~p~~~t~~~li~a~~~  177 (178)
                          ++..+|.+.+.+..+.+ ..+......|++.|++
T Consensus       231 ~~~l~~~~~~~~~~~~~~~~~-~~s~~al~~l~d~~~~  267 (320)
T PLN02789        231 KEALVSDPEVSSVCLEVLSKD-SNHVFALSDLLDLLCE  267 (320)
T ss_pred             CcccccchhHHHHHHHhhccc-CCcHHHHHHHHHHHHh
Confidence                34466888888866543 2355667777776654

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=97.71  E-value=0.00013  Score=59.63  Aligned_cols=141  Identities=12%  Similarity=0.073  Sum_probs=110.3

Q ss_pred             CChhHHHHHhccCCC---CChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHHhccccchhhHHHHHH
Q 036068           20 GQVDIARQCFDQMPE---RDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKT   96 (178)
Q Consensus        20 ~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~   96 (178)
                      +..++|+++|.+...   +|...-|-+-..++..|++.+|..+|.+..+... -+..+|..+.++|...|++..|.++|+
T Consensus       626 k~~~KAlq~y~kvL~~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~-~~~dv~lNlah~~~e~~qy~~AIqmYe  704 (1018)
T KOG2002|consen  626 KHQEKALQLYGKVLRNDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATS-DFEDVWLNLAHCYVEQGQYRLAIQMYE  704 (1018)
T ss_pred             HHHHHHHHHHHHHHhcCcchhhhccchhhhhhhccCchHHHHHHHHHHHHHh-hCCceeeeHHHHHHHHHHHHHHHHHHH
Confidence            456789999987654   4778888888899999999999999999988764 255678889999999999999999997


Q ss_pred             HHH-HhCcccchHHHHHHHHHHHhcCChhhhc------------cchhhHHHHHHHH------------------HhcCC
Q 036068           97 YID-KNKVKNDIFAGNALIDMYCICADVEKAQ------------KDKFSWTTMIVGL------------------AISGN  145 (178)
Q Consensus        97 ~m~-~~~~~~~~~~~~~ll~~~~~~~~~~~a~------------~~~~~~~~li~~~------------------~~~~~  145 (178)
                      ... +.+...++.+.+-|-.++.+.|.+.++.            ....-||..+...                  ...+.
T Consensus       705 ~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~FN~a~v~kkla~s~lr~~k~t~eev~~a~~~  784 (1018)
T KOG2002|consen  705 NCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTSVKFNLALVLKKLAESILRLEKRTLEEVLEAVKE  784 (1018)
T ss_pred             HHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccchHHhHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence            654 5566778899999999999999999987            1344455444322                  22356


Q ss_pred             hhHHHHHHHHHHHcCC
Q 036068          146 GDKALDMFSQMLRASI  161 (178)
Q Consensus       146 ~~~a~~~~~~m~~~g~  161 (178)
                      .+.|.++|.+|...+-
T Consensus       785 le~a~r~F~~ls~~~d  800 (1018)
T KOG2002|consen  785 LEEARRLFTELSKNGD  800 (1018)
T ss_pred             HHHHHHHHHHHHhcCC
Confidence            6888899999887653

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=97.69  E-value=5.2e-05  Score=44.55  Aligned_cols=77  Identities=12%  Similarity=0.154  Sum_probs=44.7

Q ss_pred             cCChhHHHHHhccCCC--C---ChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHHhccccchhhHHH
Q 036068           19 RGQVDIARQCFDQMPE--R---DYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANLRALDLGEW   93 (178)
Q Consensus        19 ~~~~~~a~~~~~~m~~--~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~   93 (178)
                      .|+++.|+.+++++.+  |   +...+-.+-.+|.+.|++++|..++++ .+.+. .+......+.+++.+.|++++|.+
T Consensus         2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~-~~~~~~~l~a~~~~~l~~y~eAi~   79 (84)
T PF12895_consen    2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDP-SNPDIHYLLARCLLKLGKYEEAIK   79 (84)
T ss_dssp             TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHH-CHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred             CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCC-CCHHHHHHHHHHHHHhCCHHHHHH
Confidence            4667777777777653  2   223344466677777777777777776 22221 123344445666777777777777


Q ss_pred             HHHH
Q 036068           94 IKTY   97 (178)
Q Consensus        94 ~~~~   97 (178)
                      .++.
T Consensus        80 ~l~~   83 (84)
T PF12895_consen   80 ALEK   83 (84)
T ss_dssp             HHHH
T ss_pred             HHhc
Confidence            7653

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=97.65  E-value=0.0033  Score=51.25  Aligned_cols=121  Identities=12%  Similarity=0.034  Sum_probs=104.4

Q ss_pred             ChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCc-HHHHHHHHHHhccccchhhHHHHHHHHHHhCcccchHHHHHHH
Q 036068           36 DYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGD-EFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALI  114 (178)
Q Consensus        36 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll  114 (178)
                      ++..+-.|-....+.|..++|..+|+...+..  |+ ......+..++.+.+++++|....+...+..+. +......+-
T Consensus        85 ~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~--Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~-~~~~~~~~a  161 (694)
T PRK15179         85 TELFQVLVARALEAAHRSDEGLAVWRGIHQRF--PDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSS-SAREILLEA  161 (694)
T ss_pred             cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC--CCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCC-CHHHHHHHH
Confidence            67788888899999999999999999998874  44 567778889999999999999999999998754 577788888


Q ss_pred             HHHHhcCChhhhc----------c-chhhHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 036068          115 DMYCICADVEKAQ----------K-DKFSWTTMIVGLAISGNGDKALDMFSQMLRA  159 (178)
Q Consensus       115 ~~~~~~~~~~~a~----------~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~  159 (178)
                      ..+.+.|++++|.          | +..++-.+-..+-..|+.++|...|++..+.
T Consensus       162 ~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~  217 (694)
T PRK15179        162 KSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDA  217 (694)
T ss_pred             HHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            8899999999997          2 3677778888888999999999999999874

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=97.63  E-value=0.0034  Score=48.87  Aligned_cols=169  Identities=19%  Similarity=0.172  Sum_probs=114.1

Q ss_pred             cchhHHHHHHHHHHhcCChhHHHHHhccCCC--C-ChhHHHHHHHHHhhcCChhHHHHH---------------------
Q 036068            4 KDVISWTAIVSRYINRGQVDIARQCFDQMPE--R-DYVLWTAMIDGYLRVNRFREALTL---------------------   59 (178)
Q Consensus         4 p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~--~-~~~~~~~li~~~~~~~~~~~a~~~---------------------   59 (178)
                      ..+.+|-++-..|.--|++.+|.+.|.+-..  | =...|-..-.+|+..|+-|+|+..                     
T Consensus       310 ~~a~sW~aVg~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgme  389 (611)
T KOG1173|consen  310 SKALSWFAVGCYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGME  389 (611)
T ss_pred             CCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHH
Confidence            4567788888888888999999999887542  1 223444444455544444444444                     


Q ss_pred             -------------HHHhHhCCCCCcHHHHHHHHHHhccccchhhHHHHHHHHHH----hCcc--cchHHHHHHHHHHHhc
Q 036068           60 -------------FQEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDK----NKVK--NDIFAGNALIDMYCIC  120 (178)
Q Consensus        60 -------------~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~----~~~~--~~~~~~~~ll~~~~~~  120 (178)
                                   |.+-.... +-|+...+-+--..-..+.+.+|..+|+....    .+.+  .-..+++.|-..|.|+
T Consensus       390 y~~t~n~kLAe~Ff~~A~ai~-P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl  468 (611)
T KOG1173|consen  390 YMRTNNLKLAEKFFKQALAIA-PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKL  468 (611)
T ss_pred             HHHhccHHHHHHHHHHHHhcC-CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHH
Confidence                         44433221 22334444444444556778888888865541    1111  1234577788889999


Q ss_pred             CChhhhc-----------cchhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhHHHHHHhhh
Q 036068          121 ADVEKAQ-----------KDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC  175 (178)
Q Consensus       121 ~~~~~a~-----------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~a~  175 (178)
                      +.+++|.           .|..++.++--.|...|+++.|.+.|++.+  .+.|+..+...++..+
T Consensus       469 ~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL--~l~p~n~~~~~lL~~a  532 (611)
T KOG1173|consen  469 NKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKAL--ALKPDNIFISELLKLA  532 (611)
T ss_pred             hhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHH--hcCCccHHHHHHHHHH
Confidence            9999997           588899999999999999999999999977  5689998888877644

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=97.60  E-value=0.01  Score=41.66  Aligned_cols=123  Identities=9%  Similarity=-0.088  Sum_probs=88.2

Q ss_pred             CChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCc----HHHHHHHHHHhccccchhhHHHHHHHHHHhCcccchH--
Q 036068           35 RDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGD----EFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIF--  108 (178)
Q Consensus        35 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~----~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~--  108 (178)
                      .....+-.+...+.+.|++++|...|++.....  |+    ...+..+..++.+.|++++|...++.+.+..+.....  
T Consensus        31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~  108 (235)
T TIGR03302        31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRY--PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADY  108 (235)
T ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHH
Confidence            366677788889999999999999999987753  32    2466778889999999999999999998876532222  


Q ss_pred             HHHHHHHHHHhc--------CChhhhc----------cch-hhH-----------------HHHHHHHHhcCChhHHHHH
Q 036068          109 AGNALIDMYCIC--------ADVEKAQ----------KDK-FSW-----------------TTMIVGLAISGNGDKALDM  152 (178)
Q Consensus       109 ~~~~ll~~~~~~--------~~~~~a~----------~~~-~~~-----------------~~li~~~~~~~~~~~a~~~  152 (178)
                      ++..+-..+...        |+.++|.          |+. ..+                 -.+...+.+.|++++|...
T Consensus       109 a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~  188 (235)
T TIGR03302       109 AYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAINR  188 (235)
T ss_pred             HHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHH
Confidence            344444444433        4555554          322 121                 1344667888999999999


Q ss_pred             HHHHHHc
Q 036068          153 FSQMLRA  159 (178)
Q Consensus       153 ~~~m~~~  159 (178)
                      +++..+.
T Consensus       189 ~~~al~~  195 (235)
T TIGR03302       189 FETVVEN  195 (235)
T ss_pred             HHHHHHH
Confidence            9999875

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=97.59  E-value=0.0036  Score=51.12  Aligned_cols=121  Identities=11%  Similarity=0.131  Sum_probs=87.3

Q ss_pred             cchhHHHHHHHHHHhcCChhHHHHHhccCCC----CChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHH
Q 036068            4 KDVISWTAIVSRYINRGQVDIARQCFDQMPE----RDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSIL   79 (178)
Q Consensus         4 p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll   79 (178)
                      -++..|.-+.+++.+.|++.+|+.+|..+..    .+...|--+-+.|...|..++|.+.|.+..... +-+...--.|-
T Consensus       412 d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~-p~~~D~Ri~La  490 (895)
T KOG2076|consen  412 DDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILA-PDNLDARITLA  490 (895)
T ss_pred             hhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCchhhhhhHH
Confidence            3455678889999999999999999998875    377788889999999999999999999987764 22334444566


Q ss_pred             HHhccccchhhHHHHHHHHH--------HhCcccchHHHHHHHHHHHhcCChhh
Q 036068           80 TARANLRALDLGEWIKTYID--------KNKVKNDIFAGNALIDMYCICADVEK  125 (178)
Q Consensus        80 ~~~~~~~~~~~a~~~~~~m~--------~~~~~~~~~~~~~ll~~~~~~~~~~~  125 (178)
                      ..+-+.|+.++|.+.+..+.        ..+..|.....-...+.+...|+.++
T Consensus       491 sl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~  544 (895)
T KOG2076|consen  491 SLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREE  544 (895)
T ss_pred             HHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHH
Confidence            66778888888888887743        22344444444445555555555554

>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase

Probab=97.57  E-value=0.002  Score=40.95  Aligned_cols=50  Identities=4%  Similarity=-0.033  Sum_probs=34.7

Q ss_pred             CCCCcHHHHHHHHHHhccccchhhHHHHHHHHHH-hCcccchHHHHHHHHH
Q 036068           67 NIMGDEFTIVSILTARANLRALDLGEWIKTYIDK-NKVKNDIFAGNALIDM  116 (178)
Q Consensus        67 ~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~-~~~~~~~~~~~~ll~~  116 (178)
                      ...|+..+..+++.+|+..+++..|.++++...+ .+++.+..+|..|+.-
T Consensus        47 pl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W   97 (126)
T PF12921_consen   47 PLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEW   97 (126)
T ss_pred             CCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence            4567777777778887777778777777776654 3455556666666653

The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=97.55  E-value=0.00069  Score=54.00  Aligned_cols=167  Identities=15%  Similarity=0.090  Sum_probs=116.0

Q ss_pred             hhHHHHHHHHHHhcCChhHHHHHhccCC--CCChhHHHHHHHHHhhcCChhHHHHHHHHhHhC-----C--C--------
Q 036068            6 VISWTAIVSRYINRGQVDIARQCFDQMP--ERDYVLWTAMIDGYLRVNRFREALTLFQEMQTS-----N--I--------   68 (178)
Q Consensus         6 ~~~~~~li~~~~~~~~~~~a~~~~~~m~--~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-----~--~--------   68 (178)
                      +..|.-+|.+|...|+.++|..+..+-.  .||..-|..+.+......-+++|.++.++.-..     |  +        
T Consensus       424 lemw~~vi~CY~~lg~~~kaeei~~q~lek~~d~~lyc~LGDv~~d~s~yEkawElsn~~sarA~r~~~~~~~~~~~fs~  503 (777)
T KOG1128|consen  424 LEMWDPVILCYLLLGQHGKAEEINRQELEKDPDPRLYCLLGDVLHDPSLYEKAWELSNYISARAQRSLALLILSNKDFSE  503 (777)
T ss_pred             HHHHHHHHHHHHHhcccchHHHHHHHHhcCCCcchhHHHhhhhccChHHHHHHHHHhhhhhHHHHHhhccccccchhHHH
Confidence            3467888999999999999888877543  467778888887777777778888777764322     0  0        


Q ss_pred             ------------CCcHHHHHHHHHHhccccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHhcCChhhhc---------
Q 036068           69 ------------MGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ---------  127 (178)
Q Consensus        69 ------------~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~---------  127 (178)
                                  .....+|-.+--+..+.++++.+.+.|..-..-.+ -+...||.+-.+|.+.++-.+|.         
T Consensus       504 ~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~P-d~~eaWnNls~ayi~~~~k~ra~~~l~EAlKc  582 (777)
T KOG1128|consen  504 ADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEP-DNAEAWNNLSTAYIRLKKKKRAFRKLKEALKC  582 (777)
T ss_pred             HHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCC-CchhhhhhhhHHHHHHhhhHHHHHHHHHHhhc
Confidence                        11122333333344566778888888877766542 24677999999999999888887         


Q ss_pred             --cchhhHHHHHHHHHhcCChhHHHHHHHHHHHcC-CCCChhHHHHHHh
Q 036068          128 --KDKFSWTTMIVGLAISGNGDKALDMFSQMLRAS-IKPDEVAYVGVLS  173 (178)
Q Consensus       128 --~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g-~~p~~~t~~~li~  173 (178)
                        .+...|...+-...+.|.++.|.+.+.+|.+.. -.-|...-..++.
T Consensus       583 n~~~w~iWENymlvsvdvge~eda~~A~~rll~~~~~~~d~~vl~~iv~  631 (777)
T KOG1128|consen  583 NYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLRKKYKDDEVLLIIVR  631 (777)
T ss_pred             CCCCCeeeechhhhhhhcccHHHHHHHHHHHHHhhhhcccchhhHHHHH
Confidence              467778888888899999999999999987631 1225444444443

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=97.55  E-value=0.0025  Score=42.56  Aligned_cols=90  Identities=12%  Similarity=-0.100  Sum_probs=44.6

Q ss_pred             hhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCC--cHHHHHHHHHHhccccchhhHHHHHHHHHHhCcccchHHHHHHH
Q 036068           37 YVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMG--DEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALI  114 (178)
Q Consensus        37 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~--~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll  114 (178)
                      ...|..+...+...|++++|...|++.......+  ...++..+-..+...|++++|...++...+.... ...++..+.
T Consensus        35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~-~~~~~~~la  113 (168)
T CHL00033         35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPF-LPQALNNMA  113 (168)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-cHHHHHHHH
Confidence            3344555555555566666666666654432111  1234555555566666666666666555544221 233344444


Q ss_pred             HHHH-------hcCChhhhc
Q 036068          115 DMYC-------ICADVEKAQ  127 (178)
Q Consensus       115 ~~~~-------~~~~~~~a~  127 (178)
                      ..|.       +.|+++.|.
T Consensus       114 ~i~~~~~~~~~~~g~~~~A~  133 (168)
T CHL00033        114 VICHYRGEQAIEQGDSEIAE  133 (168)
T ss_pred             HHHHHhhHHHHHcccHHHHH
Confidence            4444       555555443

>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]

Probab=97.55  E-value=0.0012  Score=47.44  Aligned_cols=102  Identities=11%  Similarity=0.119  Sum_probs=73.1

Q ss_pred             CCcHHHHHHHHHHhcc-----ccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHhcCChhhhccchhhHHHHHHHHHhc
Q 036068           69 MGDEFTIVSILTARAN-----LRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQKDKFSWTTMIVGLAIS  143 (178)
Q Consensus        69 ~~~~~~~~~ll~~~~~-----~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~li~~~~~~  143 (178)
                      +.|..+|.+.+..+..     .++.+-....++.|.+.|++.|..+|+.|+..+=|-.-.     ....+...+..|=+ 
T Consensus        64 ~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfi-----P~nvfQ~~F~HYP~-  137 (406)
T KOG3941|consen   64 KRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFI-----PQNVFQKVFLHYPQ-  137 (406)
T ss_pred             cccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccc-----cHHHHHHHHhhCch-
Confidence            4566677777666643     356666677778888888888888888888876543222     22334444444443 


Q ss_pred             CChhHHHHHHHHHHHcCCCCChhHHHHHHhhhhc
Q 036068          144 GNGDKALDMFSQMLRASIKPDEVAYVGVLSACTH  177 (178)
Q Consensus       144 ~~~~~a~~~~~~m~~~g~~p~~~t~~~li~a~~~  177 (178)
                       +-+.+..++++|...|+.||-++-..|+.+|++
T Consensus       138 -QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr  170 (406)
T KOG3941|consen  138 -QQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGR  170 (406)
T ss_pred             -hhhHHHHHHHHHHHcCCCCchHHHHHHHHHhcc
Confidence             345788999999999999999999999999875

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.53  E-value=0.0047  Score=43.92  Aligned_cols=140  Identities=16%  Similarity=0.126  Sum_probs=86.0

Q ss_pred             HHHHHhcCChhHHHHHhccCCCCChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHHh----ccccch
Q 036068           13 VSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTAR----ANLRAL   88 (178)
Q Consensus        13 i~~~~~~~~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~----~~~~~~   88 (178)
                      ...|.+.|++++|....+..  -+......=+..+.+..+.+-|...+++|..-.   +..|.+-|.+++    ...+.+
T Consensus       115 a~i~~~~~~~deAl~~~~~~--~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~id---ed~tLtQLA~awv~la~ggek~  189 (299)
T KOG3081|consen  115 AIIYMHDGDFDEALKALHLG--ENLEAAALNVQILLKMHRFDLAEKELKKMQQID---EDATLTQLAQAWVKLATGGEKI  189 (299)
T ss_pred             hHHhhcCCChHHHHHHHhcc--chHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc---hHHHHHHHHHHHHHHhccchhh
Confidence            44577788888888888772  234444344445556667778887778776642   445655454444    344567


Q ss_pred             hhHHHHHHHHHHhCcccchHHHHHHHHHHHhcCChhhhc-----------cchhhHHHHHHHHHhcCCh-hHHHHHHHHH
Q 036068           89 DLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ-----------KDKFSWTTMIVGLAISGNG-DKALDMFSQM  156 (178)
Q Consensus        89 ~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~-----------~~~~~~~~li~~~~~~~~~-~~a~~~~~~m  156 (178)
                      .+|.-+|++|.+. ..|++.+.+...-++...|++++|.           .++.+.-.+|..-...|.. +...+.+.++
T Consensus       190 qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QL  268 (299)
T KOG3081|consen  190 QDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTERNLSQL  268 (299)
T ss_pred             hhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHHHHHHH
Confidence            7888888888653 4567777777777777777777776           3444444444444444443 3344455555


Q ss_pred             HH
Q 036068          157 LR  158 (178)
Q Consensus       157 ~~  158 (178)
                      ..
T Consensus       269 k~  270 (299)
T KOG3081|consen  269 KL  270 (299)
T ss_pred             Hh
Confidence            43

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=97.52  E-value=0.01  Score=39.05  Aligned_cols=110  Identities=12%  Similarity=-0.012  Sum_probs=78.3

Q ss_pred             HHHhccCC-CCChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHHhccccchhhHHHHHHHHHHhCcc
Q 036068           26 RQCFDQMP-ERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVK  104 (178)
Q Consensus        26 ~~~~~~m~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~  104 (178)
                      +..+..+. +.+....-.+-.-+...|++++|.++|+.+.... .-+..-|-.|--++-..|++++|...|.......+ 
T Consensus        23 l~~l~~~~~~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~D-p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~-  100 (157)
T PRK15363         23 LRMLLDDDVTQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYD-AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKI-  100 (157)
T ss_pred             HHHHHCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-
Confidence            44455555 5555555556666778899999999999988765 22455666677777788999999999998888774 


Q ss_pred             cchHHHHHHHHHHHhcCChhhhccchhhHHHHHHHH
Q 036068          105 NDIFAGNALIDMYCICADVEKAQKDKFSWTTMIVGL  140 (178)
Q Consensus       105 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~li~~~  140 (178)
                      -++..+-.+-.++.+.|+.+.|   ...|...|..|
T Consensus       101 ddp~~~~~ag~c~L~lG~~~~A---~~aF~~Ai~~~  133 (157)
T PRK15363        101 DAPQAPWAAAECYLACDNVCYA---IKALKAVVRIC  133 (157)
T ss_pred             CCchHHHHHHHHHHHcCCHHHH---HHHHHHHHHHh
Confidence            4677777777777777777765   44555555555

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=97.52  E-value=0.011  Score=49.41  Aligned_cols=150  Identities=11%  Similarity=0.043  Sum_probs=109.4

Q ss_pred             CcchhHHHHHHHHHHhcCChhHHHHHhccCCC--CChh-HHHHHHHHHhhcCChhHHHHH------------------HH
Q 036068            3 NKDVISWTAIVSRYINRGQVDIARQCFDQMPE--RDYV-LWTAMIDGYLRVNRFREALTL------------------FQ   61 (178)
Q Consensus         3 ~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~--~~~~-~~~~li~~~~~~~~~~~a~~~------------------~~   61 (178)
                      +.+...|..|+..+.+.+++++|.++.+.-.+  |+.. .|-.+-..+.+.++.+.+..+                  .+
T Consensus        28 p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv~~l~~~~~~~~~~~ve~~~~  107 (906)
T PRK14720         28 LSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLLNLIDSFSQNLKWAIVEHICD  107 (906)
T ss_pred             cchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhhhhhhhcccccchhHHHHHHH
Confidence            46677899999999999999999999986543  3222 222222244444444444333                  33


Q ss_pred             HhHhCCCCCcHHHHHHHHHHhccccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHhcCChhhhccchhhHHHHHHHHH
Q 036068           62 EMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQKDKFSWTTMIVGLA  141 (178)
Q Consensus        62 ~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~li~~~~  141 (178)
                      .|...+  -+...+-.+..+|-+.|+.+++..+|+++.+.. +-++.+.|.+-..|... +.++|   ...+...+..+.
T Consensus       108 ~i~~~~--~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA---~~m~~KAV~~~i  180 (906)
T PRK14720        108 KILLYG--ENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKA---ITYLKKAIYRFI  180 (906)
T ss_pred             HHHhhh--hhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHH---HHHHHHHHHHHH
Confidence            333321  233567778888899999999999999999988 45799999999999999 88877   455666677788


Q ss_pred             hcCChhHHHHHHHHHHHc
Q 036068          142 ISGNGDKALDMFSQMLRA  159 (178)
Q Consensus       142 ~~~~~~~a~~~~~~m~~~  159 (178)
                      ..+++.++.+++.++.+.
T Consensus       181 ~~kq~~~~~e~W~k~~~~  198 (906)
T PRK14720        181 KKKQYVGIEEIWSKLVHY  198 (906)
T ss_pred             hhhcchHHHHHHHHHHhc
Confidence            888999999999999875

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=97.52  E-value=0.0027  Score=47.75  Aligned_cols=81  Identities=9%  Similarity=-0.113  Sum_probs=64.4

Q ss_pred             HHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHHhccccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHhcCChh
Q 036068           45 DGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVE  124 (178)
Q Consensus        45 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~  124 (178)
                      ..+...|++++|.+.|++..+.. .-+...|..+..++.+.|++++|...++...+.... +...|..+-.+|...|+++
T Consensus        10 ~~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~-~~~a~~~lg~~~~~lg~~~   87 (356)
T PLN03088         10 KEAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIELDPS-LAKAYLRKGTACMKLEEYQ   87 (356)
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHhCCHH
Confidence            45567788999999999988765 335677778888888999999999999888887643 5667778888888899998


Q ss_pred             hhc
Q 036068          125 KAQ  127 (178)
Q Consensus       125 ~a~  127 (178)
                      +|.
T Consensus        88 eA~   90 (356)
T PLN03088         88 TAK   90 (356)
T ss_pred             HHH
Confidence            887

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=97.51  E-value=0.00039  Score=38.87  Aligned_cols=54  Identities=15%  Similarity=0.145  Sum_probs=34.9

Q ss_pred             hhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHHhccccchhhHHHHHHHHHHhC
Q 036068           48 LRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNK  102 (178)
Q Consensus        48 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~  102 (178)
                      .+.|++++|.+.|++..... +-+......+..+|.+.|++++|..+++.+....
T Consensus         2 l~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~   55 (68)
T PF14559_consen    2 LKQGDYDEAIELLEKALQRN-PDNPEARLLLAQCYLKQGQYDEAEELLERLLKQD   55 (68)
T ss_dssp             HHTTHHHHHHHHHHHHHHHT-TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGG
T ss_pred             hhccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence            35567777777777766653 2255566667777777777777777777666654

...

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=97.46  E-value=0.0094  Score=39.93  Aligned_cols=118  Identities=14%  Similarity=0.050  Sum_probs=84.0

Q ss_pred             ChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCc--HHHHHHHHHHhccccchhhHHHHHHHHHHhCcccchHHHHHH
Q 036068           36 DYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGD--EFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNAL  113 (178)
Q Consensus        36 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~--~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l  113 (178)
                      ....+..+-..+...|++++|...|++..+....+.  ...+..+..++.+.|++++|...+....+.... +...+..+
T Consensus        34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l  112 (172)
T PRK02603         34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPK-QPSALNNI  112 (172)
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-cHHHHHHH
Confidence            556778888889999999999999999876543322  467888889999999999999999988886533 45666777


Q ss_pred             HHHHHhcCChhhhccchhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCh
Q 036068          114 IDMYCICADVEKAQKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDE  165 (178)
Q Consensus       114 l~~~~~~~~~~~a~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~  165 (178)
                      ...|...|+...+..+...         ....+++|.+++++..+.  .|+.
T Consensus       113 g~~~~~~g~~~~a~~~~~~---------A~~~~~~A~~~~~~a~~~--~p~~  153 (172)
T PRK02603        113 AVIYHKRGEKAEEAGDQDE---------AEALFDKAAEYWKQAIRL--APNN  153 (172)
T ss_pred             HHHHHHcCChHhHhhCHHH---------HHHHHHHHHHHHHHHHhh--Cchh
Confidence            7778887776655432110         112356677777776653  3543

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=97.44  E-value=0.00094  Score=39.12  Aligned_cols=81  Identities=7%  Similarity=0.016  Sum_probs=53.4

Q ss_pred             cCChhHHHHHHHHhHhCCCC-CcHHHHHHHHHHhccccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHhcCChhhhcc
Q 036068           50 VNRFREALTLFQEMQTSNIM-GDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQK  128 (178)
Q Consensus        50 ~~~~~~a~~~~~~m~~~~~~-~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~  128 (178)
                      .|+++.|..+++++.+..-. ++...+..+..++.+.|++++|..+++. .+.+... ...                   
T Consensus         2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~-~~~-------------------   60 (84)
T PF12895_consen    2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSN-PDI-------------------   60 (84)
T ss_dssp             TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCH-HHH-------------------
T ss_pred             CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCC-HHH-------------------
Confidence            57899999999999887431 2455566688999999999999999988 3222211 111                   


Q ss_pred             chhhHHHHHHHHHhcCChhHHHHHHHH
Q 036068          129 DKFSWTTMIVGLAISGNGDKALDMFSQ  155 (178)
Q Consensus       129 ~~~~~~~li~~~~~~~~~~~a~~~~~~  155 (178)
                          .-.+..++.+.|++++|.+++++
T Consensus        61 ----~~l~a~~~~~l~~y~eAi~~l~~   83 (84)
T PF12895_consen   61 ----HYLLARCLLKLGKYEEAIKALEK   83 (84)
T ss_dssp             ----HHHHHHHHHHTT-HHHHHHHHHH
T ss_pred             ----HHHHHHHHHHhCCHHHHHHHHhc
Confidence                11234566677777777777664

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=97.43  E-value=0.0015  Score=42.45  Aligned_cols=106  Identities=15%  Similarity=0.083  Sum_probs=70.3

Q ss_pred             chhHHHHHHH---HHHhcCChhHHHHHhccCCC-------C------------------ChhHHHHHHHHHhhcCChhHH
Q 036068            5 DVISWTAIVS---RYINRGQVDIARQCFDQMPE-------R------------------DYVLWTAMIDGYLRVNRFREA   56 (178)
Q Consensus         5 ~~~~~~~li~---~~~~~~~~~~a~~~~~~m~~-------~------------------~~~~~~~li~~~~~~~~~~~a   56 (178)
                      |+..|..++.   .....|+.+.+.+.+++...       +                  -......++..+...|++++|
T Consensus         2 D~~~F~~~~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a   81 (146)
T PF03704_consen    2 DVDRFEALVREARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEA   81 (146)
T ss_dssp             HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHH
T ss_pred             CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHH
Confidence            3444555533   33556777777666665532       0                  222355567777789999999


Q ss_pred             HHHHHHhHhCCCCCcHHHHHHHHHHhccccchhhHHHHHHHHH-----HhCcccchHHHH
Q 036068           57 LTLFQEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYID-----KNKVKNDIFAGN  111 (178)
Q Consensus        57 ~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~-----~~~~~~~~~~~~  111 (178)
                      ....++..... +.+...|..+|.++.+.|+...|.+.|+.+.     +.|++|++.+-.
T Consensus        82 ~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~~  140 (146)
T PF03704_consen   82 LRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETRA  140 (146)
T ss_dssp             HHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHHH
T ss_pred             HHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHHH
Confidence            99999998876 5578899999999999999999999998764     468999877643

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase

Probab=97.40  E-value=0.0024  Score=40.56  Aligned_cols=95  Identities=13%  Similarity=0.023  Sum_probs=60.2

Q ss_pred             cHHHHHHHHHHhccccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHhcCChhhhccchhhHHHHHHHHHhcCChhHHH
Q 036068           71 DEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQKDKFSWTTMIVGLAISGNGDKAL  150 (178)
Q Consensus        71 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~li~~~~~~~~~~~a~  150 (178)
                      |..++.++|.++++.|+.+....+++..  -|+..+...-..-      ...-....|+..+..+++.+|+..|++..|+
T Consensus         1 de~~~~~ii~al~r~g~~~~i~~~i~~~--WgI~~~~~~~~~~------~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al   72 (126)
T PF12921_consen    1 DEELLCNIIYALGRSGQLDSIKSYIKSV--WGIDVNGKKKEGD------YPPSSPLYPTSRLLIAIVHSFGYNGDIFSAL   72 (126)
T ss_pred             ChHHHHHHHHHHhhcCCHHHHHHHHHHh--cCCCCCCccccCc------cCCCCCCCCCHHHHHHHHHHHHhcccHHHHH
Confidence            4567777888888888887777776533  2332221100000      1111112277888888888888888888888


Q ss_pred             HHHHHHHHc-CCCCChhHHHHHHh
Q 036068          151 DMFSQMLRA-SIKPDEVAYVGVLS  173 (178)
Q Consensus       151 ~~~~~m~~~-g~~p~~~t~~~li~  173 (178)
                      ++.+...+. +++.+..++..|++
T Consensus        73 ~~vd~fs~~Y~I~i~~~~W~~Ll~   96 (126)
T PF12921_consen   73 KLVDFFSRKYPIPIPKEFWRRLLE   96 (126)
T ss_pred             HHHHHHHHHcCCCCCHHHHHHHHH
Confidence            888888764 77777777777765

The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=97.40  E-value=0.0013  Score=36.44  Aligned_cols=58  Identities=7%  Similarity=-0.055  Sum_probs=41.5

Q ss_pred             HHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHHhccccchhhHHHHHHHHHHhC
Q 036068           44 IDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNK  102 (178)
Q Consensus        44 i~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~  102 (178)
                      -..+.+.|++++|.+.|++..+.. +-+...+..+-.++.+.|++++|...++...+..
T Consensus         4 a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~   61 (65)
T PF13432_consen    4 ARALYQQGDYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQGRYDEALAYYERALELD   61 (65)
T ss_dssp             HHHHHHCTHHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence            345677788888888888877765 2356677777777778888888888887776654

>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]

Probab=97.40  E-value=0.017  Score=49.79  Aligned_cols=135  Identities=12%  Similarity=0.044  Sum_probs=78.9

Q ss_pred             HHHHHhccCC-CC-ChhHHHHHHHHHhhcCChhHHHHHHHHhHhC-CC-----CC-------------------------
Q 036068           24 IARQCFDQMP-ER-DYVLWTAMIDGYLRVNRFREALTLFQEMQTS-NI-----MG-------------------------   70 (178)
Q Consensus        24 ~a~~~~~~m~-~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-~~-----~~-------------------------   70 (178)
                      .|.++-+..+ +| ....|-.-|....+.++.++|.++.++.+.. +.     ..                         
T Consensus      1443 saeDferlvrssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeR 1522 (1710)
T KOG1070|consen 1443 SAEDFERLVRSSPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFER 1522 (1710)
T ss_pred             CHHHHHHHHhcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHH
Confidence            3444444444 34 3445666777777777888887777776432 00     00                         


Q ss_pred             ------cHHHHHHHHHHhccccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHhcCChhhhc----------c---chh
Q 036068           71 ------DEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ----------K---DKF  131 (178)
Q Consensus        71 ------~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~----------~---~~~  131 (178)
                            ....|..|...|.+.+++++|.++++.|.+.- .....+|......+.+.++-+.|.          |   .+.
T Consensus      1523 Acqycd~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF-~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~ 1601 (1710)
T KOG1070|consen 1523 ACQYCDAYTVHLKLLGIYEKSEKNDEADELLRLMLKKF-GQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVE 1601 (1710)
T ss_pred             HHHhcchHHHHHHHHHHHHHhhcchhHHHHHHHHHHHh-cchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHH
Confidence                  11234445555666666777777777776542 245667777777777777655554          2   333


Q ss_pred             hHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 036068          132 SWTTMIVGLAISGNGDKALDMFSQMLRA  159 (178)
Q Consensus       132 ~~~~li~~~~~~~~~~~a~~~~~~m~~~  159 (178)
                      .-...+..-.+.|+.+.+..+|+..+..
T Consensus      1602 ~IskfAqLEFk~GDaeRGRtlfEgll~a 1629 (1710)
T KOG1070|consen 1602 FISKFAQLEFKYGDAERGRTLFEGLLSA 1629 (1710)
T ss_pred             HHHHHHHHHhhcCCchhhHHHHHHHHhh
Confidence            4444555556677777777777766653

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=97.39  E-value=0.033  Score=44.04  Aligned_cols=68  Identities=18%  Similarity=0.221  Sum_probs=47.3

Q ss_pred             HHHHHhcCChhHHHHHhccCCC--CChh-HHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHH-HHHHHh
Q 036068           13 VSRYINRGQVDIARQCFDQMPE--RDYV-LWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIV-SILTAR   82 (178)
Q Consensus        13 i~~~~~~~~~~~a~~~~~~m~~--~~~~-~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~-~ll~~~   82 (178)
                      ...+...|++++|++.+++-.+  .|.. .....-..+.+.|+.++|..+|..+.+.+  |+-..|- .+..+.
T Consensus        11 ~~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN--Pdn~~Yy~~L~~~~   82 (517)
T PF12569_consen   11 NSILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN--PDNYDYYRGLEEAL   82 (517)
T ss_pred             HHHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHH
Confidence            3455688999999999987654  3444 44455667888999999999999998886  4444443 444443

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=97.38  E-value=0.011  Score=39.46  Aligned_cols=88  Identities=8%  Similarity=-0.107  Sum_probs=49.3

Q ss_pred             HHHHHHHHHHhcCChhHHHHHhccCCC--C----ChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHH
Q 036068            8 SWTAIVSRYINRGQVDIARQCFDQMPE--R----DYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTA   81 (178)
Q Consensus         8 ~~~~li~~~~~~~~~~~a~~~~~~m~~--~----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~   81 (178)
                      .|..+...+...|++++|...|++...  +    ...+|..+-..+...|+.++|...+++..+.. +....++..+...
T Consensus        37 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~-~~~~~~~~~la~i  115 (168)
T CHL00033         37 TYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN-PFLPQALNNMAVI  115 (168)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHH
Confidence            455556666666777777766665531  1    12355566666666677777777776665542 2223445555555


Q ss_pred             hc-------cccchhhHHHHHH
Q 036068           82 RA-------NLRALDLGEWIKT   96 (178)
Q Consensus        82 ~~-------~~~~~~~a~~~~~   96 (178)
                      +.       +.|+++.|...++
T Consensus       116 ~~~~~~~~~~~g~~~~A~~~~~  137 (168)
T CHL00033        116 CHYRGEQAIEQGDSEIAEAWFD  137 (168)
T ss_pred             HHHhhHHHHHcccHHHHHHHHH
Confidence            55       5556655544443

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=97.36  E-value=0.0031  Score=50.48  Aligned_cols=146  Identities=11%  Similarity=0.089  Sum_probs=109.0

Q ss_pred             HHHHHHHHHHhcCChhHHHHHhccCCCCChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHHhccccc
Q 036068            8 SWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANLRA   87 (178)
Q Consensus         8 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~   87 (178)
                      .=-.+...+.+.|-...|..+|++.     ..|.-+|..|...|+-++|..+..+..++  +||..-|..+.+......-
T Consensus       400 ~q~~laell~slGitksAl~I~Erl-----emw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGDv~~d~s~  472 (777)
T KOG1128|consen  400 LQRLLAELLLSLGITKSALVIFERL-----EMWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGDVLHDPSL  472 (777)
T ss_pred             HHHHHHHHHHHcchHHHHHHHHHhH-----HHHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhhhccChHH
Confidence            3345678888999999999999975     45777888899999999999988887773  7899999999998888877


Q ss_pred             hhhHHHHHHHHHHh-----Cc----------------------ccchHHHHHHHHHHHhcCChhhhc----------c-c
Q 036068           88 LDLGEWIKTYIDKN-----KV----------------------KNDIFAGNALIDMYCICADVEKAQ----------K-D  129 (178)
Q Consensus        88 ~~~a~~~~~~m~~~-----~~----------------------~~~~~~~~~ll~~~~~~~~~~~a~----------~-~  129 (178)
                      +++|.++.+....+     |.                      +....+|-.+=.+..+.++++.+.          | +
T Consensus       473 yEkawElsn~~sarA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~  552 (777)
T KOG1128|consen  473 YEKAWELSNYISARAQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDN  552 (777)
T ss_pred             HHHHHHHhhhhhHHHHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCc
Confidence            88888877654322     00                      011223333333334455555554          3 6


Q ss_pred             hhhHHHHHHHHHhcCChhHHHHHHHHHHHcC
Q 036068          130 KFSWTTMIVGLAISGNGDKALDMFSQMLRAS  160 (178)
Q Consensus       130 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g  160 (178)
                      ...||.+-.+|.+.++-.+|...+.+..+.+
T Consensus       553 ~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn  583 (777)
T KOG1128|consen  553 AEAWNNLSTAYIRLKKKKRAFRKLKEALKCN  583 (777)
T ss_pred             hhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC
Confidence            8899999999999999999999999998865

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=97.35  E-value=0.0013  Score=47.84  Aligned_cols=108  Identities=15%  Similarity=0.176  Sum_probs=76.5

Q ss_pred             hHHHHHHHH-HHhcCChhHHHHHhccCCC---CChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcH---HHHHHHH
Q 036068            7 ISWTAIVSR-YINRGQVDIARQCFDQMPE---RDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDE---FTIVSIL   79 (178)
Q Consensus         7 ~~~~~li~~-~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~---~~~~~ll   79 (178)
                      .+|-..... +...++.+.|..+|+...+   .+...|..-+..+.+.++.+.|..+|++.... +.++.   ..|..++
T Consensus        36 ~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i  114 (280)
T PF05843_consen   36 HVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIKLNDINNARALFERAISS-LPKEKQSKKIWKKFI  114 (280)
T ss_dssp             HHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHH
Confidence            344433333 2236777779999998765   48888999999999999999999999998765 33332   4888899


Q ss_pred             HHhccccchhhHHHHHHHHHHhCcccchHHHHHHHHHH
Q 036068           80 TARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMY  117 (178)
Q Consensus        80 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~  117 (178)
                      +.=.+.|+++.+..+.+++.+.-  |+......+++-|
T Consensus       115 ~fE~~~Gdl~~v~~v~~R~~~~~--~~~~~~~~f~~ry  150 (280)
T PF05843_consen  115 EFESKYGDLESVRKVEKRAEELF--PEDNSLELFSDRY  150 (280)
T ss_dssp             HHHHHHS-HHHHHHHHHHHHHHT--TTS-HHHHHHCCT
T ss_pred             HHHHHcCCHHHHHHHHHHHHHHh--hhhhHHHHHHHHh
Confidence            88889999999999999988863  3444555555555

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.33  E-value=0.0036  Score=44.46  Aligned_cols=113  Identities=12%  Similarity=0.130  Sum_probs=89.8

Q ss_pred             HHHHHhcCChhHHHHHhccCCCC-ChhHHHHHHHHHh----hcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHHhccccc
Q 036068           13 VSRYINRGQVDIARQCFDQMPER-DYVLWTAMIDGYL----RVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANLRA   87 (178)
Q Consensus        13 i~~~~~~~~~~~a~~~~~~m~~~-~~~~~~~li~~~~----~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~   87 (178)
                      +..+.+..+++.|...+++|.+- +..|.+-|-.++.    ..+...+|+-+|++|.++ ..|+..+.+-..-++...++
T Consensus       144 VqI~lk~~r~d~A~~~lk~mq~ided~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~  222 (299)
T KOG3081|consen  144 VQILLKMHRFDLAEKELKKMQQIDEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGR  222 (299)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcC
Confidence            56677889999999999999985 4445554555555    446789999999999764 47899999999999999999


Q ss_pred             hhhHHHHHHHHHHhCcccchHHHHHHHHHHHhcCChhhhc
Q 036068           88 LDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ  127 (178)
Q Consensus        88 ~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~  127 (178)
                      +++|+.+++........ ++.+...+|-.-...|...++.
T Consensus       223 ~eeAe~lL~eaL~kd~~-dpetL~Nliv~a~~~Gkd~~~~  261 (299)
T KOG3081|consen  223 YEEAESLLEEALDKDAK-DPETLANLIVLALHLGKDAEVT  261 (299)
T ss_pred             HHHHHHHHHHHHhccCC-CHHHHHHHHHHHHHhCCChHHH
Confidence            99999999999887654 5777777777777777665443

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=97.31  E-value=0.0022  Score=35.85  Aligned_cols=65  Identities=12%  Similarity=0.059  Sum_probs=45.3

Q ss_pred             ChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHHhcccc-chhhHHHHHHHHHHh
Q 036068           36 DYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANLR-ALDLGEWIKTYIDKN  101 (178)
Q Consensus        36 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~-~~~~a~~~~~~m~~~  101 (178)
                      +...|..+-..+...|++++|...|++..+.. +-+...|..+-.++.+.| ++++|.+.++...+.
T Consensus         2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l   67 (69)
T PF13414_consen    2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKL   67 (69)
T ss_dssp             SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence            44566777777777777777777777776654 235667777777777777 677777777766553

...

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=97.31  E-value=0.00053  Score=38.28  Aligned_cols=60  Identities=15%  Similarity=0.257  Sum_probs=48.5

Q ss_pred             HhcCChhHHHHHhccCCC--C-ChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHH
Q 036068           17 INRGQVDIARQCFDQMPE--R-DYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSI   78 (178)
Q Consensus        17 ~~~~~~~~a~~~~~~m~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l   78 (178)
                      .+.|++++|.++|+++.+  | +...+-.+...|.+.|++++|.++++++....  |+...|..+
T Consensus         2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~--~~~~~~~~l   64 (68)
T PF14559_consen    2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQD--PDNPEYQQL   64 (68)
T ss_dssp             HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGG--TTHHHHHHH
T ss_pred             hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--cCHHHHHHH
Confidence            578999999999999853  4 77788889999999999999999999998874  664554444

...

>KOG2047 consensus mRNA splicing factor [RNA processing and modification]

Probab=97.31  E-value=0.022  Score=45.44  Aligned_cols=164  Identities=14%  Similarity=0.149  Sum_probs=117.1

Q ss_pred             hHHHHHHHHHHhcCChhHHHHHhccCCC--C---ChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHH
Q 036068            7 ISWTAIVSRYINRGQVDIARQCFDQMPE--R---DYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTA   81 (178)
Q Consensus         7 ~~~~~li~~~~~~~~~~~a~~~~~~m~~--~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~   81 (178)
                      ..|-.-+....++|++......|+....  |   -...|...+......+.++-+..++++-++.  .|.  .-.-.|..
T Consensus       103 RIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~--~P~--~~eeyie~  178 (835)
T KOG2047|consen  103 RIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV--APE--AREEYIEY  178 (835)
T ss_pred             HHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc--CHH--HHHHHHHH
Confidence            3455566667777777777777775432  1   3346778888888888888999999988775  243  36778888


Q ss_pred             hccccchhhHHHHHHHHHH------hCcccchHHHHHHHHHHHhcCChhhhc-------------c--chhhHHHHHHHH
Q 036068           82 RANLRALDLGEWIKTYIDK------NKVKNDIFAGNALIDMYCICADVEKAQ-------------K--DKFSWTTMIVGL  140 (178)
Q Consensus        82 ~~~~~~~~~a~~~~~~m~~------~~~~~~~~~~~~ll~~~~~~~~~~~a~-------------~--~~~~~~~li~~~  140 (178)
                      +++.+++++|.+-+.....      ..-+.+-..|.-+.+...++-+.-...             +  -...|..|.+-|
T Consensus       179 L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdYY  258 (835)
T KOG2047|consen  179 LAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADYY  258 (835)
T ss_pred             HHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHHH
Confidence            8999999999888876542      122455667777777777654433322             2  357899999999


Q ss_pred             HhcCChhHHHHHHHHHHHcCCCCChhHHHHHHhhhh
Q 036068          141 AISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACT  176 (178)
Q Consensus       141 ~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~a~~  176 (178)
                      .+.|++++|..+|++-...  ..+..-|..+.++|+
T Consensus       259 Ir~g~~ekarDvyeeai~~--v~tvrDFt~ifd~Ya  292 (835)
T KOG2047|consen  259 IRSGLFEKARDVYEEAIQT--VMTVRDFTQIFDAYA  292 (835)
T ss_pred             HHhhhhHHHHHHHHHHHHh--heehhhHHHHHHHHH
Confidence            9999999999999998765  345555666666665

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=97.26  E-value=0.0014  Score=42.62  Aligned_cols=68  Identities=13%  Similarity=0.161  Sum_probs=51.8

Q ss_pred             HHHHHHHHHHhcCChhHHHHHhccCCC--C-ChhHHHHHHHHHhhcCChhHHHHHHHHhH-----hCCCCCcHHHH
Q 036068            8 SWTAIVSRYINRGQVDIARQCFDQMPE--R-DYVLWTAMIDGYLRVNRFREALTLFQEMQ-----TSNIMGDEFTI   75 (178)
Q Consensus         8 ~~~~li~~~~~~~~~~~a~~~~~~m~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~-----~~~~~~~~~~~   75 (178)
                      ....++..+...|++++|..+.+.+..  | |...|..+|.+|...|+..+|.+.|+++.     +.|+.|+..+-
T Consensus        64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~  139 (146)
T PF03704_consen   64 ALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETR  139 (146)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHH
T ss_pred             HHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHH
Confidence            456677788889999999999998864  4 78899999999999999999999999974     35999998764

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]

Probab=97.24  E-value=0.035  Score=42.90  Aligned_cols=136  Identities=14%  Similarity=0.144  Sum_probs=75.9

Q ss_pred             cCChhHHHHHhccCCC---CChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcH-HHHHHHHHHhccccchhhHHHH
Q 036068           19 RGQVDIARQCFDQMPE---RDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDE-FTIVSILTARANLRALDLGEWI   94 (178)
Q Consensus        19 ~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~-~~~~~ll~~~~~~~~~~~a~~~   94 (178)
                      .++++.|.++|+....   .++..|---+..=.++..+..|..+|++....  -|-+ ..|-..+..=-..|+...|.++
T Consensus        86 q~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~--lPRVdqlWyKY~ymEE~LgNi~gaRqi  163 (677)
T KOG1915|consen   86 QKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTI--LPRVDQLWYKYIYMEEMLGNIAGARQI  163 (677)
T ss_pred             HHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHh--cchHHHHHHHHHHHHHHhcccHHHHHH
Confidence            4556667777776553   35555555555555666666666666665443  2222 2233333333445566666666


Q ss_pred             HHHHHHhCcccchHHHHHHHHHHHhcCChhhhc----------cchhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 036068           95 KTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ----------KDKFSWTTMIVGLAISGNGDKALDMFSQMLR  158 (178)
Q Consensus        95 ~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~----------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~  158 (178)
                      |+.-.+  .+|+...|.+.|..-.+-...+.|.          |++.+|--...--.++|....|..+|.+..+
T Consensus       164 ferW~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~VyerAie  235 (677)
T KOG1915|consen  164 FERWME--WEPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARSVYERAIE  235 (677)
T ss_pred             HHHHHc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence            655543  3556666666666555555555554          5555555555555566666666666665554

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=97.21  E-value=0.011  Score=39.71  Aligned_cols=81  Identities=11%  Similarity=0.029  Sum_probs=62.2

Q ss_pred             hhHHHHHHHHHHhcCChhHHHHHhccCCC--CC----hhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHH
Q 036068            6 VISWTAIVSRYINRGQVDIARQCFDQMPE--RD----YVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSIL   79 (178)
Q Consensus         6 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~--~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll   79 (178)
                      ...|..+...+.+.|++++|...|++..+  ++    ...+..+...+.+.|++++|...+++..+.. +-+...+..+.
T Consensus        35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg  113 (172)
T PRK02603         35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-PKQPSALNNIA  113 (172)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHH
Confidence            34577788889999999999999998752  22    3578888899999999999999999988753 22455666666


Q ss_pred             HHhccccc
Q 036068           80 TARANLRA   87 (178)
Q Consensus        80 ~~~~~~~~   87 (178)
                      .++...|+
T Consensus       114 ~~~~~~g~  121 (172)
T PRK02603        114 VIYHKRGE  121 (172)
T ss_pred             HHHHHcCC
Confidence            66766655

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=97.20  E-value=0.0069  Score=39.80  Aligned_cols=93  Identities=6%  Similarity=0.014  Sum_probs=77.6

Q ss_pred             HHHHHHHHHhcCChhHHHHHhccCC--CC-ChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHHhccc
Q 036068            9 WTAIVSRYINRGQVDIARQCFDQMP--ER-DYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANL   85 (178)
Q Consensus         9 ~~~li~~~~~~~~~~~a~~~~~~m~--~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~   85 (178)
                      .-.+-..+...|++++|.++|+.+-  .| +..-|-.|--.+-..|++++|+..|.+...... -|...+-.+-.++...
T Consensus        38 lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~-ddp~~~~~ag~c~L~l  116 (157)
T PRK15363         38 LYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKI-DAPQAPWAAAECYLAC  116 (157)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCchHHHHHHHHHHHc
Confidence            3346667788999999999999875  34 666777788888899999999999999888774 4788888899999999


Q ss_pred             cchhhHHHHHHHHHHhC
Q 036068           86 RALDLGEWIKTYIDKNK  102 (178)
Q Consensus        86 ~~~~~a~~~~~~m~~~~  102 (178)
                      |+.+.|.+.|+..+...
T Consensus       117 G~~~~A~~aF~~Ai~~~  133 (157)
T PRK15363        117 DNVCYAIKALKAVVRIC  133 (157)
T ss_pred             CCHHHHHHHHHHHHHHh
Confidence            99999999998776543

>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]

Probab=97.19  E-value=0.0076  Score=43.42  Aligned_cols=102  Identities=12%  Similarity=0.072  Sum_probs=80.6

Q ss_pred             HHHHhccCC--CCChhHHHHHHHHHhh-----cCChhHHHHHHHHhHhCCCCCcHHHHHHHHHHhccccch---------
Q 036068           25 ARQCFDQMP--ERDYVLWTAMIDGYLR-----VNRFREALTLFQEMQTSNIMGDEFTIVSILTARANLRAL---------   88 (178)
Q Consensus        25 a~~~~~~m~--~~~~~~~~~li~~~~~-----~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~---------   88 (178)
                      ....|...+  ++|-.+|-..+..+..     .+.++-....++.|.+.|+..|..+|+.||+.+-+..-.         
T Consensus        53 ~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F  132 (406)
T KOG3941|consen   53 VEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVF  132 (406)
T ss_pred             hhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHH
Confidence            344555555  5688888888887764     356788888899999999999999999999988765421         


Q ss_pred             -------hhHHHHHHHHHHhCcccchHHHHHHHHHHHhcCChhhh
Q 036068           89 -------DLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKA  126 (178)
Q Consensus        89 -------~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a  126 (178)
                             +=+..++++|...|+.||-.+-..++..+++.+-.-.-
T Consensus       133 ~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p~~K  177 (406)
T KOG3941|consen  133 LHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFPTKK  177 (406)
T ss_pred             hhCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccccHHH
Confidence                   23678899999999999999999999999988765443

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=97.16  E-value=0.007  Score=43.55  Aligned_cols=97  Identities=8%  Similarity=-0.031  Sum_probs=67.4

Q ss_pred             HHHHHHHHHHhcCChhHHHHHhccCCC--CCh----hHHHHHHHHHhhcCChhHHHHHHHHhHhCC--CCCcHHHHHHHH
Q 036068            8 SWTAIVSRYINRGQVDIARQCFDQMPE--RDY----VLWTAMIDGYLRVNRFREALTLFQEMQTSN--IMGDEFTIVSIL   79 (178)
Q Consensus         8 ~~~~li~~~~~~~~~~~a~~~~~~m~~--~~~----~~~~~li~~~~~~~~~~~a~~~~~~m~~~~--~~~~~~~~~~ll   79 (178)
                      .|...+..+.+.|++++|...|+.+.+  |+.    ..+--+-..|...|++++|...|+.+.+.-  -......+..+.
T Consensus       145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg  224 (263)
T PRK10803        145 DYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVG  224 (263)
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHH
Confidence            466656555677888888888888764  432    355567778888888888888888887542  111234444556


Q ss_pred             HHhccccchhhHHHHHHHHHHhCcc
Q 036068           80 TARANLRALDLGEWIKTYIDKNKVK  104 (178)
Q Consensus        80 ~~~~~~~~~~~a~~~~~~m~~~~~~  104 (178)
                      .++.+.|+.++|..+|+.+.+..+.
T Consensus       225 ~~~~~~g~~~~A~~~~~~vi~~yP~  249 (263)
T PRK10803        225 VIMQDKGDTAKAKAVYQQVIKKYPG  249 (263)
T ss_pred             HHHHHcCCHHHHHHHHHHHHHHCcC
Confidence            6677888888888888888876543

>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.15  E-value=0.033  Score=46.89  Aligned_cols=84  Identities=14%  Similarity=0.125  Sum_probs=46.6

Q ss_pred             hHHHHHHHHHHhcCChhHHHHHhccCCCCChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHHhcccc
Q 036068            7 ISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANLR   86 (178)
Q Consensus         7 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~   86 (178)
                      .+|+.+..+-.+.|.+.+|.+-|-+.  .|+..|..+++...+.|.|++-.+.+.-.++..-.|.+.+  .+|.+|++.+
T Consensus      1105 ~vWsqlakAQL~~~~v~dAieSyika--dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id~--eLi~AyAkt~ 1180 (1666)
T KOG0985|consen 1105 AVWSQLAKAQLQGGLVKDAIESYIKA--DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYIDS--ELIFAYAKTN 1180 (1666)
T ss_pred             HHHHHHHHHHHhcCchHHHHHHHHhc--CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccchH--HHHHHHHHhc
Confidence            35666666666666666665554332  3445566666666666666666665544444444444433  4566666666


Q ss_pred             chhhHHHH
Q 036068           87 ALDLGEWI   94 (178)
Q Consensus        87 ~~~~a~~~   94 (178)
                      +..+.+++
T Consensus      1181 rl~elE~f 1188 (1666)
T KOG0985|consen 1181 RLTELEEF 1188 (1666)
T ss_pred             hHHHHHHH
Confidence            55554444

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=97.14  E-value=0.024  Score=35.67  Aligned_cols=58  Identities=14%  Similarity=0.109  Sum_probs=43.3

Q ss_pred             HHHhhcCChhHHHHHHHHhHhCCCCCc--HHHHHHHHHHhccccchhhHHHHHHHHHHhC
Q 036068           45 DGYLRVNRFREALTLFQEMQTSNIMGD--EFTIVSILTARANLRALDLGEWIKTYIDKNK  102 (178)
Q Consensus        45 ~~~~~~~~~~~a~~~~~~m~~~~~~~~--~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~  102 (178)
                      .++-..|+.++|..+|++-...|....  ...+-.+-..+...|++++|..+++......
T Consensus         9 ~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~   68 (120)
T PF12688_consen    9 WAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEF   68 (120)
T ss_pred             HHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence            455667888888888888888776544  3455566777888888888888888777653

>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]

Probab=97.14  E-value=0.059  Score=41.72  Aligned_cols=161  Identities=11%  Similarity=0.139  Sum_probs=81.5

Q ss_pred             cchhHHHHHHHHHHhcCChhHHHHHhccCC--CCChhHHHHHHHHHhhcCChhHHHHHHHHhHhC-CC-CCcHHHHHHHH
Q 036068            4 KDVISWTAIVSRYINRGQVDIARQCFDQMP--ERDYVLWTAMIDGYLRVNRFREALTLFQEMQTS-NI-MGDEFTIVSIL   79 (178)
Q Consensus         4 p~~~~~~~li~~~~~~~~~~~a~~~~~~m~--~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-~~-~~~~~~~~~ll   79 (178)
                      |+...|++.|+.=.+-..++.|.++++...  .|++.+|---...=.++|.+..|.++|....+. |- ..+...+.++.
T Consensus       172 P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~~~e~lfvaFA  251 (677)
T KOG1915|consen  172 PDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDDEEAEILFVAFA  251 (677)
T ss_pred             CcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence            444455555555555555555555554432  344444444444444445544454444443221 10 00111222222


Q ss_pred             HHhccccchhhHHHHHHHHHHhCccc-chHHHHHHHHHHHhcCChhhhc-------------------cchhhHHHHHHH
Q 036068           80 TARANLRALDLGEWIKTYIDKNKVKN-DIFAGNALIDMYCICADVEKAQ-------------------KDKFSWTTMIVG  139 (178)
Q Consensus        80 ~~~~~~~~~~~a~~~~~~m~~~~~~~-~~~~~~~ll~~~~~~~~~~~a~-------------------~~~~~~~~li~~  139 (178)
                      ..=.++..++.|.-+|+..++.=++. ....|...+..--+.|+.....                   -|..+|--.++.
T Consensus       252 ~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~nYDsWfdylrL  331 (677)
T KOG1915|consen  252 EFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPYNYDSWFDYLRL  331 (677)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCCCchHHHHHHHH
Confidence            22223334445555554444432111 1344444444444455544433                   377788888888


Q ss_pred             HHhcCChhHHHHHHHHHHHcCCCCCh
Q 036068          140 LAISGNGDKALDMFSQMLRASIKPDE  165 (178)
Q Consensus       140 ~~~~~~~~~a~~~~~~m~~~g~~p~~  165 (178)
                      -...|+.+...++|++.+. +++|-.
T Consensus       332 ~e~~g~~~~Ire~yErAIa-nvpp~~  356 (677)
T KOG1915|consen  332 EESVGDKDRIRETYERAIA-NVPPAS  356 (677)
T ss_pred             HHhcCCHHHHHHHHHHHHc-cCCchh
Confidence            8889999999999999886 677743

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=97.11  E-value=0.025  Score=46.96  Aligned_cols=98  Identities=7%  Similarity=0.083  Sum_probs=48.4

Q ss_pred             cchhHHHHHHHHHHhcCChhHHHHHhccCCCCC------hhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHH
Q 036068            4 KDVISWTAIVSRYINRGQVDIARQCFDQMPERD------YVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVS   77 (178)
Q Consensus         4 p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~------~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~   77 (178)
                      .++...+.|...|.-.|++..++.+...+...+      ...|--+-++|=..|++++|...|.+-....-.--...+.-
T Consensus       268 ~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~G  347 (1018)
T KOG2002|consen  268 ENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVG  347 (1018)
T ss_pred             CCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccc
Confidence            345555566666666666666666655554321      11233445555555666666655555433321111223333


Q ss_pred             HHHHhccccchhhHHHHHHHHHHh
Q 036068           78 ILTARANLRALDLGEWIKTYIDKN  101 (178)
Q Consensus        78 ll~~~~~~~~~~~a~~~~~~m~~~  101 (178)
                      +-+.+.+.|+++.+...|+.+.+.
T Consensus       348 lgQm~i~~~dle~s~~~fEkv~k~  371 (1018)
T KOG2002|consen  348 LGQMYIKRGDLEESKFCFEKVLKQ  371 (1018)
T ss_pred             hhHHHHHhchHHHHHHHHHHHHHh
Confidence            444555555555555555555544

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=97.11  E-value=0.1  Score=42.01  Aligned_cols=158  Identities=13%  Similarity=0.065  Sum_probs=107.9

Q ss_pred             hHHHHHHHHHHhcCChhHHHHHhccCCC---CChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHHhc
Q 036068            7 ISWTAIVSRYINRGQVDIARQCFDQMPE---RDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARA   83 (178)
Q Consensus         7 ~~~~~li~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~   83 (178)
                      .+|..-...|.+.+.++-|..+|....+   .+...|......=-..|..++...+|++....- +-...-|....+-+-
T Consensus       517 ~tw~~da~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~-pkae~lwlM~ake~w  595 (913)
T KOG0495|consen  517 STWLDDAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQC-PKAEILWLMYAKEKW  595 (913)
T ss_pred             hHHhhhHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CcchhHHHHHHHHHH
Confidence            3566667777777777777777776654   255566666666556677777778888877663 223345555566667


Q ss_pred             cccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHhcCChhhhc----------cchhhHHHHHHHHHhcCChhHHHHHH
Q 036068           84 NLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ----------KDKFSWTTMIVGLAISGNGDKALDMF  153 (178)
Q Consensus        84 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~----------~~~~~~~~li~~~~~~~~~~~a~~~~  153 (178)
                      ..|+...|..++....+.... +...|-..+..-+.+.+++.|.          ++...|-.-+..--..+..++|++++
T Consensus       596 ~agdv~~ar~il~~af~~~pn-seeiwlaavKle~en~e~eraR~llakar~~sgTeRv~mKs~~~er~ld~~eeA~rll  674 (913)
T KOG0495|consen  596 KAGDVPAARVILDQAFEANPN-SEEIWLAAVKLEFENDELERARDLLAKARSISGTERVWMKSANLERYLDNVEEALRLL  674 (913)
T ss_pred             hcCCcHHHHHHHHHHHHhCCC-cHHHHHHHHHHhhccccHHHHHHHHHHHhccCCcchhhHHHhHHHHHhhhHHHHHHHH
Confidence            778888888888877776644 6777777777777777777775          56666666666666677778888877


Q ss_pred             HHHHHcCCCCChhHH
Q 036068          154 SQMLRASIKPDEVAY  168 (178)
Q Consensus       154 ~~m~~~g~~p~~~t~  168 (178)
                      ++.++.  .|+..-+
T Consensus       675 Ee~lk~--fp~f~Kl  687 (913)
T KOG0495|consen  675 EEALKS--FPDFHKL  687 (913)
T ss_pred             HHHHHh--CCchHHH
Confidence            776653  5655433

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=97.11  E-value=0.073  Score=40.19  Aligned_cols=152  Identities=13%  Similarity=0.111  Sum_probs=94.2

Q ss_pred             HHHHHHHhcCChhHHHHHhccCCCC-------ChhHHHHHHHHHhh---cCChhHHHHHHHHhHhCCCCCcHHHHHHHHH
Q 036068           11 AIVSRYINRGQVDIARQCFDQMPER-------DYVLWTAMIDGYLR---VNRFREALTLFQEMQTSNIMGDEFTIVSILT   80 (178)
Q Consensus        11 ~li~~~~~~~~~~~a~~~~~~m~~~-------~~~~~~~li~~~~~---~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~   80 (178)
                      .++-+|-...+++.+.++++.++..       ....--...-++.+   .|+-++|.+++..+....-.++..||..+-+
T Consensus       146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GR  225 (374)
T PF13281_consen  146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGR  225 (374)
T ss_pred             HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence            4555788999999999999999863       11111122234445   7999999999999766666788889988877


Q ss_pred             Hhccc---------cchhhHHHHHHHHHHhCcccchHHHHHHHHHHHhcCC-hhhhc----------------------c
Q 036068           81 ARANL---------RALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICAD-VEKAQ----------------------K  128 (178)
Q Consensus        81 ~~~~~---------~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~-~~~a~----------------------~  128 (178)
                      .|...         ...++|...|..--+.  .|+...--.+.-.+...|. .+...                      .
T Consensus       226 IyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~--~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~~  303 (374)
T PF13281_consen  226 IYKDLFLESNFTDRESLDKAIEWYRKGFEI--EPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKMQ  303 (374)
T ss_pred             HHHHHHHHcCccchHHHHHHHHHHHHHHcC--CccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccccccc
Confidence            76322         2345566655433221  2222111111112222222 11110                      3


Q ss_pred             chhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCh
Q 036068          129 DKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDE  165 (178)
Q Consensus       129 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~  165 (178)
                      |.=.+.+++.+.+-.|+.++|.+.+++|.+.. +|.-
T Consensus       304 dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~-~~~W  339 (374)
T PF13281_consen  304 DYWDVATLLEASVLAGDYEKAIQAAEKAFKLK-PPAW  339 (374)
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcC-Ccch
Confidence            44455788899999999999999999999763 4443

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=97.08  E-value=0.0052  Score=44.31  Aligned_cols=89  Identities=12%  Similarity=0.084  Sum_probs=74.3

Q ss_pred             hccccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHhcCChhhhc-----------cchhhHHHHHHHHHhcCChhHHH
Q 036068           82 RANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ-----------KDKFSWTTMIVGLAISGNGDKAL  150 (178)
Q Consensus        82 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~-----------~~~~~~~~li~~~~~~~~~~~a~  150 (178)
                      ..+.+++++|.+.|...++..+ .+..-|..--.+|++.|+++.|.           .-..+|..|-.+|...|++++|.
T Consensus        91 ~m~~~~Y~eAv~kY~~AI~l~P-~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A~  169 (304)
T KOG0553|consen   91 LMKNKDYQEAVDKYTEAIELDP-TNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEAI  169 (304)
T ss_pred             HHHhhhHHHHHHHHHHHHhcCC-CcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHHH
Confidence            3567889999999999988753 36777888899999999999988           24678889999999999999999


Q ss_pred             HHHHHHHHcCCCCChhHHHHHHh
Q 036068          151 DMFSQMLRASIKPDEVAYVGVLS  173 (178)
Q Consensus       151 ~~~~~m~~~g~~p~~~t~~~li~  173 (178)
                      +.|++.++  +.|+..+|..=|+
T Consensus       170 ~aykKaLe--ldP~Ne~~K~nL~  190 (304)
T KOG0553|consen  170 EAYKKALE--LDPDNESYKSNLK  190 (304)
T ss_pred             HHHHhhhc--cCCCcHHHHHHHH
Confidence            99999886  5899888876554

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=97.05  E-value=0.0017  Score=35.95  Aligned_cols=55  Identities=18%  Similarity=0.279  Sum_probs=47.1

Q ss_pred             HHHHHHhcCChhHHHHHhccCCC--C-ChhHHHHHHHHHhhcCChhHHHHHHHHhHhC
Q 036068           12 IVSRYINRGQVDIARQCFDQMPE--R-DYVLWTAMIDGYLRVNRFREALTLFQEMQTS   66 (178)
Q Consensus        12 li~~~~~~~~~~~a~~~~~~m~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~   66 (178)
                      +...+.+.|++++|.+.|++..+  | +...+..+-..+...|++++|...|++..+.
T Consensus         3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~   60 (65)
T PF13432_consen    3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALEL   60 (65)
T ss_dssp             HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            45678899999999999998875  3 6778888889999999999999999998765

>KOG3616 consensus Selective LIM binding factor [Transcription]

Probab=97.04  E-value=0.011  Score=48.10  Aligned_cols=104  Identities=13%  Similarity=0.055  Sum_probs=60.4

Q ss_pred             HHHHHhcCChhHHHHHhccCCCCChh--HHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHHhccccchhh
Q 036068           13 VSRYINRGQVDIARQCFDQMPERDYV--LWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANLRALDL   90 (178)
Q Consensus        13 i~~~~~~~~~~~a~~~~~~m~~~~~~--~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~   90 (178)
                      |.+-.....|.+|+.+++.++..++.  -|..+...|+..|+++.|.++|.+-         .-++-.|..|.+.|+++.
T Consensus       739 ieaai~akew~kai~ildniqdqk~~s~yy~~iadhyan~~dfe~ae~lf~e~---------~~~~dai~my~k~~kw~d  809 (1636)
T KOG3616|consen  739 IEAAIGAKEWKKAISILDNIQDQKTASGYYGEIADHYANKGDFEIAEELFTEA---------DLFKDAIDMYGKAGKWED  809 (1636)
T ss_pred             HHHHhhhhhhhhhHhHHHHhhhhccccccchHHHHHhccchhHHHHHHHHHhc---------chhHHHHHHHhccccHHH
Confidence            44455566677777777776654333  3566666777777777777666542         123445566667777766


Q ss_pred             HHHHHHHHHHhCcccchHHHHHHHHHHHhcCChhhhc
Q 036068           91 GEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ  127 (178)
Q Consensus        91 a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~  127 (178)
                      |.++-.+.  .|.+.....|-+-..-.-+.|.+.+|.
T Consensus       810 a~kla~e~--~~~e~t~~~yiakaedldehgkf~eae  844 (1636)
T KOG3616|consen  810 AFKLAEEC--HGPEATISLYIAKAEDLDEHGKFAEAE  844 (1636)
T ss_pred             HHHHHHHh--cCchhHHHHHHHhHHhHHhhcchhhhh
Confidence            66654333  344444444544445555566666555

>KOG2796 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.99  E-value=0.026  Score=40.36  Aligned_cols=165  Identities=11%  Similarity=0.042  Sum_probs=111.7

Q ss_pred             hhHHHHHHHHHHhcCChhHHHHHhccCCC--C--------ChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHH
Q 036068            6 VISWTAIVSRYINRGQVDIARQCFDQMPE--R--------DYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTI   75 (178)
Q Consensus         6 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~--~--------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~   75 (178)
                      ..-|++|++.+.-...+.+....++.=..  .        -...-++++..+-..+++.-....+++..+..-+-+..-.
T Consensus       136 gnpqesLdRl~~L~~~V~~ii~~~e~~~~~ESsv~lW~KRl~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~  215 (366)
T KOG2796|consen  136 GNPQESLDRLHKLKTVVSKILANLEQGLAEESSIRLWRKRLGRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLL  215 (366)
T ss_pred             CCcHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHH
Confidence            34466777777666666666555554332  1        2334556777777788888889999998887767777888


Q ss_pred             HHHHHHhccccchhhHHHHHHHHHHhCcccchHHHHHHHH-----HHHhcCChhhhc-----------cchhhHHHHHHH
Q 036068           76 VSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALID-----MYCICADVEKAQ-----------KDKFSWTTMIVG  139 (178)
Q Consensus        76 ~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~-----~~~~~~~~~~a~-----------~~~~~~~~li~~  139 (178)
                      ..+.+.-.+.||.+.|...++...+..-..+..+.+.++.     .|.-.+++..+.           .|...-|.=.-.
T Consensus       216 s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALc  295 (366)
T KOG2796|consen  216 SGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALC  295 (366)
T ss_pred             HHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHH
Confidence            8888889999999999999998877655555555555543     233344444443           245555554555


Q ss_pred             HHhcCChhHHHHHHHHHHHcCCCCChhHHHHHH
Q 036068          140 LAISGNGDKALDMFSQMLRASIKPDEVAYVGVL  172 (178)
Q Consensus       140 ~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li  172 (178)
                      ..-.|+...|+...+.|++.  .|...+-++++
T Consensus       296 llYlg~l~DAiK~~e~~~~~--~P~~~l~es~~  326 (366)
T KOG2796|consen  296 LLYLGKLKDALKQLEAMVQQ--DPRHYLHESVL  326 (366)
T ss_pred             HHHHHHHHHHHHHHHHHhcc--CCccchhhhHH
Confidence            55678999999999999864  56665555443

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=96.98  E-value=0.0046  Score=34.92  Aligned_cols=58  Identities=12%  Similarity=-0.013  Sum_probs=41.9

Q ss_pred             HHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHHhccccchhhHHHHHHHHHHhCc
Q 036068           45 DGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKV  103 (178)
Q Consensus        45 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~  103 (178)
                      ..|.+.+++++|.++++++...+ +.+...+...-.++.+.|++++|.+.++...+.++
T Consensus         3 ~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p   60 (73)
T PF13371_consen    3 QIYLQQEDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLERALELSP   60 (73)
T ss_pred             HHHHhCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCC
Confidence            45677778888888888877764 33556666677777788888888888877776654

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.97  E-value=0.049  Score=43.02  Aligned_cols=84  Identities=14%  Similarity=0.098  Sum_probs=50.4

Q ss_pred             HHHHHHHHhccccchhhHHHHHHHHHHhCccc-chHHHHHHHHHHHh-cCChhhhcc--chhhHHHHH---HHHHhcCCh
Q 036068           74 TIVSILTARANLRALDLGEWIKTYIDKNKVKN-DIFAGNALIDMYCI-CADVEKAQK--DKFSWTTMI---VGLAISGNG  146 (178)
Q Consensus        74 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~-~~~~~~~ll~~~~~-~~~~~~a~~--~~~~~~~li---~~~~~~~~~  146 (178)
                      +...-.+.|-+.+++++|..+|+.+.+.+.+- +...-..++..-.. .+++....|  ...+|..+.   ..+...|++
T Consensus       112 ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v~~v~e~syel~yN~Ac~~i~~gky  191 (652)
T KOG2376|consen  112 LLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQSVPEVPEDSYELLYNTACILIENGKY  191 (652)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHhccCCCcchHHHHHHHHHHHHhcccH
Confidence            44444566788899999999999998876532 22222222222111 121233332  234555554   445678999


Q ss_pred             hHHHHHHHHHH
Q 036068          147 DKALDMFSQML  157 (178)
Q Consensus       147 ~~a~~~~~~m~  157 (178)
                      .+|.++++..+
T Consensus       192 ~qA~elL~kA~  202 (652)
T KOG2376|consen  192 NQAIELLEKAL  202 (652)
T ss_pred             HHHHHHHHHHH
Confidence            99999998883

>KOG3616 consensus Selective LIM binding factor [Transcription]

Probab=96.96  E-value=0.0067  Score=49.20  Aligned_cols=97  Identities=16%  Similarity=0.133  Sum_probs=63.4

Q ss_pred             HHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHHhccccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHhcCChhh
Q 036068           46 GYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEK  125 (178)
Q Consensus        46 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~  125 (178)
                      +-.....|.+|+.+++-+..++..  ..-|..+.+.|...|+++.|+++|.+         ...++-.|..|.+.|.|++
T Consensus       741 aai~akew~kai~ildniqdqk~~--s~yy~~iadhyan~~dfe~ae~lf~e---------~~~~~dai~my~k~~kw~d  809 (1636)
T KOG3616|consen  741 AAIGAKEWKKAISILDNIQDQKTA--SGYYGEIADHYANKGDFEIAEELFTE---------ADLFKDAIDMYGKAGKWED  809 (1636)
T ss_pred             HHhhhhhhhhhHhHHHHhhhhccc--cccchHHHHHhccchhHHHHHHHHHh---------cchhHHHHHHHhccccHHH
Confidence            334456677777777777665432  33566777888888888888888743         2235667888888888888


Q ss_pred             hc----------cchhhHHHHHHHHHhcCChhHHHHHH
Q 036068          126 AQ----------KDKFSWTTMIVGLAISGNGDKALDMF  153 (178)
Q Consensus       126 a~----------~~~~~~~~li~~~~~~~~~~~a~~~~  153 (178)
                      |.          .....|-+-..-+-++|++.+|.++|
T Consensus       810 a~kla~e~~~~e~t~~~yiakaedldehgkf~eaeqly  847 (1636)
T KOG3616|consen  810 AFKLAEECHGPEATISLYIAKAEDLDEHGKFAEAEQLY  847 (1636)
T ss_pred             HHHHHHHhcCchhHHHHHHHhHHhHHhhcchhhhhhee
Confidence            87          23444544445555666666665544

>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.93  E-value=0.047  Score=46.01  Aligned_cols=106  Identities=11%  Similarity=0.125  Sum_probs=79.0

Q ss_pred             HHHHhcCChhHHHHHhccCCC-------------------------CChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCC
Q 036068           14 SRYINRGQVDIARQCFDQMPE-------------------------RDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNI   68 (178)
Q Consensus        14 ~~~~~~~~~~~a~~~~~~m~~-------------------------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~   68 (178)
                      ..+..++-+++|..+|++...                         .....|.-+-.+=.+.|.+.+|.+.|-+      
T Consensus      1056 ~iai~~~LyEEAF~ifkkf~~n~~A~~VLie~i~~ldRA~efAe~~n~p~vWsqlakAQL~~~~v~dAieSyik------ 1129 (1666)
T KOG0985|consen 1056 EIAIENQLYEEAFAIFKKFDMNVSAIQVLIENIGSLDRAYEFAERCNEPAVWSQLAKAQLQGGLVKDAIESYIK------ 1129 (1666)
T ss_pred             HHHhhhhHHHHHHHHHHHhcccHHHHHHHHHHhhhHHHHHHHHHhhCChHHHHHHHHHHHhcCchHHHHHHHHh------
Confidence            445566667777777776542                         1445677777777777777777765544      


Q ss_pred             CCcHHHHHHHHHHhccccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHhcCChhhhc
Q 036068           69 MGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ  127 (178)
Q Consensus        69 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~  127 (178)
                      .-|...|.-+++.+.+.|.+++-.+++....+..-+|.+  =+.+|-+|++.++..+..
T Consensus      1130 adDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~i--d~eLi~AyAkt~rl~elE 1186 (1666)
T KOG0985|consen 1130 ADDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYI--DSELIFAYAKTNRLTELE 1186 (1666)
T ss_pred             cCCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccc--hHHHHHHHHHhchHHHHH
Confidence            236678999999999999999999999888887766654  468999999999988876

>PLN02789 farnesyltranstransferase

Probab=96.92  E-value=0.081  Score=39.29  Aligned_cols=117  Identities=9%  Similarity=-0.035  Sum_probs=56.1

Q ss_pred             HHHHHHHHHhcCChhHHHHHhccCCCC---ChhHHHHHHHHHhhcC-ChhHHHHHHHHhHhCCCCCcHHHHHHHHHHhcc
Q 036068            9 WTAIVSRYINRGQVDIARQCFDQMPER---DYVLWTAMIDGYLRVN-RFREALTLFQEMQTSNIMGDEFTIVSILTARAN   84 (178)
Q Consensus         9 ~~~li~~~~~~~~~~~a~~~~~~m~~~---~~~~~~~li~~~~~~~-~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~   84 (178)
                      +..+-..+...++.++|+.+.++..+.   +..+|+.--..+.+.| +++++++.++++.+.+-+ +..+|+----.+.+
T Consensus        40 ~~~~ra~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npk-nyqaW~~R~~~l~~  118 (320)
T PLN02789         40 MDYFRAVYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPK-NYQIWHHRRWLAEK  118 (320)
T ss_pred             HHHHHHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCc-chHHhHHHHHHHHH
Confidence            334444445555666666666655432   3333433333344444 356666666666554322 33344433222333


Q ss_pred             ccc--hhhHHHHHHHHHHhCcccchHHHHHHHHHHHhcCChhhhc
Q 036068           85 LRA--LDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ  127 (178)
Q Consensus        85 ~~~--~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~  127 (178)
                      .+.  .+++..+++.+.+... -+.++|+..-..+.+.|+++++.
T Consensus       119 l~~~~~~~el~~~~kal~~dp-kNy~AW~~R~w~l~~l~~~~eeL  162 (320)
T PLN02789        119 LGPDAANKELEFTRKILSLDA-KNYHAWSHRQWVLRTLGGWEDEL  162 (320)
T ss_pred             cCchhhHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHhhhHHHHH
Confidence            333  2445555555555443 24555555555555555555554

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=96.91  E-value=0.011  Score=33.94  Aligned_cols=70  Identities=9%  Similarity=-0.103  Sum_probs=49.0

Q ss_pred             HHHHHHHHHHhccccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHhcCChhhhccchhhHHHHHHHHHhcCChhHHHH
Q 036068           72 EFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQKDKFSWTTMIVGLAISGNGDKALD  151 (178)
Q Consensus        72 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~li~~~~~~~~~~~a~~  151 (178)
                      ..+++.+-.+|.+.|++++|...++...+. ..........                ...+++.+-..+...|++++|++
T Consensus         5 a~~~~~la~~~~~~~~~~~A~~~~~~al~~-~~~~~~~~~~----------------~a~~~~~lg~~~~~~g~~~~A~~   67 (78)
T PF13424_consen    5 ANAYNNLARVYRELGRYDEALDYYEKALDI-EEQLGDDHPD----------------TANTLNNLGECYYRLGDYEEALE   67 (78)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-HHHTTTHHHH----------------HHHHHHHHHHHHHHTTHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-HHHHCCCCHH----------------HHHHHHHHHHHHHHcCCHHHHHH
Confidence            357788888999999999999999877754 2111111111                13457778888889999999999


Q ss_pred             HHHHHHH
Q 036068          152 MFSQMLR  158 (178)
Q Consensus       152 ~~~~m~~  158 (178)
                      ++++..+
T Consensus        68 ~~~~al~   74 (78)
T PF13424_consen   68 YYQKALD   74 (78)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHh
Confidence            9988654

...

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=96.89  E-value=0.014  Score=45.61  Aligned_cols=112  Identities=16%  Similarity=0.109  Sum_probs=86.3

Q ss_pred             HHHhcCChhHHHHHhccCCC--C-ChhHHHHHHHHHhhcCChhHHHHHHHHhHhC------CCCCcHHHHHHHHHHhccc
Q 036068           15 RYINRGQVDIARQCFDQMPE--R-DYVLWTAMIDGYLRVNRFREALTLFQEMQTS------NIMGDEFTIVSILTARANL   85 (178)
Q Consensus        15 ~~~~~~~~~~a~~~~~~m~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~------~~~~~~~~~~~ll~~~~~~   85 (178)
                      -|.+.+++..|.++|.+...  | |+...+.+--.....+.+.+|...|+.-+..      .......+++.|-.+|.+.
T Consensus       389 ey~~t~n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl  468 (611)
T KOG1173|consen  389 EYMRTNNLKLAEKFFKQALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKL  468 (611)
T ss_pred             HHHHhccHHHHHHHHHHHHhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHH
Confidence            45566677777777776543  3 7777777777777788899999999886521      1123556788888999999


Q ss_pred             cchhhHHHHHHHHHHhCcccchHHHHHHHHHHHhcCChhhhc
Q 036068           86 RALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ  127 (178)
Q Consensus        86 ~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~  127 (178)
                      +.+++|...++...... +.+..++.++--.|...|+++.|.
T Consensus       469 ~~~~eAI~~~q~aL~l~-~k~~~~~asig~iy~llgnld~Ai  509 (611)
T KOG1173|consen  469 NKYEEAIDYYQKALLLS-PKDASTHASIGYIYHLLGNLDKAI  509 (611)
T ss_pred             hhHHHHHHHHHHHHHcC-CCchhHHHHHHHHHHHhcChHHHH
Confidence            99999999998888765 457889999999999999999986

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.82  E-value=0.042  Score=40.09  Aligned_cols=85  Identities=12%  Similarity=0.041  Sum_probs=52.0

Q ss_pred             cCChhHHHHHhccCCC-CChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHHhccccchhhHHHHHHH
Q 036068           19 RGQVDIARQCFDQMPE-RDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTY   97 (178)
Q Consensus        19 ~~~~~~a~~~~~~m~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~   97 (178)
                      .+++..+..+.++.+. .+..+.+-.-....+.|+.+.|.+-|+...+-+---....|+..+- ..+.++++.|.++.++
T Consensus       125 e~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpllAYniALa-Hy~~~qyasALk~iSE  203 (459)
T KOG4340|consen  125 EGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLALA-HYSSRQYASALKHISE  203 (459)
T ss_pred             cccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHHHHhhcCCCchhHHHHHHH-HHhhhhHHHHHHHHHH
Confidence            3344444444444442 2344444444455577888888888888766544444566665554 4456788888888888


Q ss_pred             HHHhCcc
Q 036068           98 IDKNKVK  104 (178)
Q Consensus        98 m~~~~~~  104 (178)
                      ++++|+.
T Consensus       204 IieRG~r  210 (459)
T KOG4340|consen  204 IIERGIR  210 (459)
T ss_pred             HHHhhhh
Confidence            8877653

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.82  E-value=0.1  Score=37.18  Aligned_cols=116  Identities=9%  Similarity=-0.015  Sum_probs=61.3

Q ss_pred             HHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcH-HHHHHHHHHhccccchhhHHHHHHHHHHhCcccchHHHHHHHHHHH
Q 036068           40 WTAMIDGYLRVNRFREALTLFQEMQTSNIMGDE-FTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYC  118 (178)
Q Consensus        40 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~-~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~  118 (178)
                      |.-++-+....|+.+.|..+++++..+=  |.. ..-..-.-.+-..|++++|.++++.+.+.. +.|..++--=+...-
T Consensus        55 ~EqV~IAAld~~~~~lAq~C~~~L~~~f--p~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilk  131 (289)
T KOG3060|consen   55 YEQVFIAALDTGRDDLAQKCINQLRDRF--PGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDD-PTDTVIRKRKLAILK  131 (289)
T ss_pred             HHHHHHHHHHhcchHHHHHHHHHHHHhC--CCChhHHHHHHHHHHHhhchhhHHHHHHHHhccC-cchhHHHHHHHHHHH
Confidence            3334444555566666666666655442  221 111111111234456666666666666655 334444444444444


Q ss_pred             hcCChhhhc-----------cchhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 036068          119 ICADVEKAQ-----------KDKFSWTTMIVGLAISGNGDKALDMFSQMLR  158 (178)
Q Consensus       119 ~~~~~~~a~-----------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~  158 (178)
                      ..|...+|.           .|...|.-+-.-|...|++++|-=.++++.-
T Consensus       132 a~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll  182 (289)
T KOG3060|consen  132 AQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLL  182 (289)
T ss_pred             HcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHH
Confidence            455554554           4666666666666666666666666666654

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=96.80  E-value=0.14  Score=40.70  Aligned_cols=130  Identities=14%  Similarity=0.052  Sum_probs=82.7

Q ss_pred             CChhHHHHHHHHHhhcC-----ChhHHHHHHHHhHhCCCCCc-HHHHHHHHHHhcccc--------chhhHHHHHHHHHH
Q 036068           35 RDYVLWTAMIDGYLRVN-----RFREALTLFQEMQTSNIMGD-EFTIVSILTARANLR--------ALDLGEWIKTYIDK  100 (178)
Q Consensus        35 ~~~~~~~~li~~~~~~~-----~~~~a~~~~~~m~~~~~~~~-~~~~~~ll~~~~~~~--------~~~~a~~~~~~m~~  100 (178)
                      .|...|...+++.....     +.++|.++|++..+.  .|+ ...|..+..++....        +...+.+.......
T Consensus       335 ~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l--dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~a  412 (517)
T PRK10153        335 HQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKS--EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVA  412 (517)
T ss_pred             CCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhh
Confidence            47788888888765432     267888888888776  355 233333333222111        12222333332222


Q ss_pred             h-CcccchHHHHHHHHHHHhcCChhhhc----------cchhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhHH
Q 036068          101 N-KVKNDIFAGNALIDMYCICADVEKAQ----------KDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAY  168 (178)
Q Consensus       101 ~-~~~~~~~~~~~ll~~~~~~~~~~~a~----------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~  168 (178)
                      . ....++..+.++--.+...|++++|.          |+...|..+...+...|+.++|.+.|++....  .|...||
T Consensus       413 l~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L--~P~~pt~  489 (517)
T PRK10153        413 LPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMSWLNYVLLGKVYELKGDNRLAADAYSTAFNL--RPGENTL  489 (517)
T ss_pred             cccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCchH
Confidence            2 12334567777766666778888887          67778888889999999999999999998753  4555444

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=96.76  E-value=0.0032  Score=35.17  Aligned_cols=62  Identities=16%  Similarity=0.351  Sum_probs=53.6

Q ss_pred             chhHHHHHHHHHHhcCChhHHHHHhccCCC---CChhHHHHHHHHHhhcC-ChhHHHHHHHHhHhC
Q 036068            5 DVISWTAIVSRYINRGQVDIARQCFDQMPE---RDYVLWTAMIDGYLRVN-RFREALTLFQEMQTS   66 (178)
Q Consensus         5 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~-~~~~a~~~~~~m~~~   66 (178)
                      ++.+|..+-..+.+.|++++|+..|++..+   .+...|..+-.++.+.| ++++|.+.|++..+.
T Consensus         2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l   67 (69)
T PF13414_consen    2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKL   67 (69)
T ss_dssp             SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence            467899999999999999999999998763   37778888889999999 799999999987653

...

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=96.75  E-value=0.042  Score=39.60  Aligned_cols=104  Identities=18%  Similarity=0.103  Sum_probs=71.4

Q ss_pred             hHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcH----HHHHHHHHHhccccchhhHHHHHHHHHHhCcccchHHHHHH
Q 036068           38 VLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDE----FTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNAL  113 (178)
Q Consensus        38 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~----~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l  113 (178)
                      ..|...+..+.+.|++++|...|+.+.+.-  |+.    ..+--+-.++...|++++|...|+.+.+..+. ++....  
T Consensus       144 ~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~y--P~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~-s~~~~d--  218 (263)
T PRK10803        144 TDYNAAIALVQDKSRQDDAIVAFQNFVKKY--PDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPK-SPKAAD--  218 (263)
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHHC--cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-CcchhH--
Confidence            346666666667789999999999987753  332    35556778888899999999999888876432 222222  


Q ss_pred             HHHHHhcCChhhhccchhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChh
Q 036068          114 IDMYCICADVEKAQKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEV  166 (178)
Q Consensus       114 l~~~~~~~~~~~a~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~  166 (178)
                                        .+-.+...+...|+.++|..+|++..+.  .|+..
T Consensus       219 ------------------Al~klg~~~~~~g~~~~A~~~~~~vi~~--yP~s~  251 (263)
T PRK10803        219 ------------------AMFKVGVIMQDKGDTAKAKAVYQQVIKK--YPGTD  251 (263)
T ss_pred             ------------------HHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCCH
Confidence                              2223445566788888889888888765  45544

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=96.72  E-value=0.0051  Score=35.30  Aligned_cols=63  Identities=13%  Similarity=0.066  Sum_probs=42.1

Q ss_pred             hHHHHHHHHHhhcCChhHHHHHHHHhHhC----CC-CCc-HHHHHHHHHHhccccchhhHHHHHHHHHH
Q 036068           38 VLWTAMIDGYLRVNRFREALTLFQEMQTS----NI-MGD-EFTIVSILTARANLRALDLGEWIKTYIDK  100 (178)
Q Consensus        38 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~----~~-~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~m~~  100 (178)
                      .+++.+-..|...|++++|++.|++....    |- .|. ..++..+-.++...|++++|.+.++...+
T Consensus         6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~   74 (78)
T PF13424_consen    6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD   74 (78)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            45667777777778888887777775432    21 122 55677777788888888888888776543

...

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=96.67  E-value=0.18  Score=38.47  Aligned_cols=120  Identities=9%  Similarity=-0.027  Sum_probs=65.1

Q ss_pred             cchhHHHHHHHHHHhcCChhHHHHHhccCCCCChh------HHHHHHHHHhhcCChhHHHHHHHHhHhCC----------
Q 036068            4 KDVISWTAIVSRYINRGQVDIARQCFDQMPERDYV------LWTAMIDGYLRVNRFREALTLFQEMQTSN----------   67 (178)
Q Consensus         4 p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~------~~~~li~~~~~~~~~~~a~~~~~~m~~~~----------   67 (178)
                      .|++....+.+.+...|+.++|...|++.+.-|+.      .|..|+.   +.|+.+....+...+....          
T Consensus       230 ~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~---~eg~~e~~~~L~~~Lf~~~~~ta~~wfV~  306 (564)
T KOG1174|consen  230 CNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLG---QEGGCEQDSALMDYLFAKVKYTASHWFVH  306 (564)
T ss_pred             ccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHH---hccCHhhHHHHHHHHHhhhhcchhhhhhh
Confidence            46777888889999999999999999987643222      2333332   2233333333322222110          


Q ss_pred             --------------------CCC---cHHHHHHHHHHhccccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHhcCChh
Q 036068           68 --------------------IMG---DEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVE  124 (178)
Q Consensus        68 --------------------~~~---~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~  124 (178)
                                          |..   +...|-.=-..+...++.++|.-.|+..+.-. +.+...|..|+.+|...|...
T Consensus       307 ~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La-p~rL~~Y~GL~hsYLA~~~~k  385 (564)
T KOG1174|consen  307 AQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLA-PYRLEIYRGLFHSYLAQKRFK  385 (564)
T ss_pred             hhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHhhchHH
Confidence                                111   11112111123445556666665555554433 235667777777777777777


Q ss_pred             hhc
Q 036068          125 KAQ  127 (178)
Q Consensus       125 ~a~  127 (178)
                      +|.
T Consensus       386 EA~  388 (564)
T KOG1174|consen  386 EAN  388 (564)
T ss_pred             HHH
Confidence            765

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=96.56  E-value=0.052  Score=35.13  Aligned_cols=81  Identities=7%  Similarity=0.098  Sum_probs=58.5

Q ss_pred             chhHHHHHHHHHHhcCChhHHHHHhccCCCC------ChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHH
Q 036068            5 DVISWTAIVSRYINRGQVDIARQCFDQMPER------DYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSI   78 (178)
Q Consensus         5 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l   78 (178)
                      +...+-.-.....+.|++++|.+.|+.+...      ....---|+.+|.+.+++++|...+++..+..-..--.-|...
T Consensus         9 ~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y   88 (142)
T PF13512_consen    9 SPQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYY   88 (142)
T ss_pred             CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHH
Confidence            3334344455666899999999999998752      4456667889999999999999999998887543333556666


Q ss_pred             HHHhccc
Q 036068           79 LTARANL   85 (178)
Q Consensus        79 l~~~~~~   85 (178)
                      +.+++.-
T Consensus        89 ~~gL~~~   95 (142)
T PF13512_consen   89 MRGLSYY   95 (142)
T ss_pred             HHHHHHH
Confidence            6665533

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.53  E-value=0.068  Score=41.48  Aligned_cols=148  Identities=10%  Similarity=0.088  Sum_probs=104.8

Q ss_pred             HHHHHHHHHhcCChhHHHHHhccCCC---CChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHHhccc
Q 036068            9 WTAIVSRYINRGQVDIARQCFDQMPE---RDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANL   85 (178)
Q Consensus         9 ~~~li~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~   85 (178)
                      |--+...|.+..+-.+....|++..+   .|..+|..--..+.-.+++++|..=|++-.+.. +-++..|-.+--+.-+.
T Consensus       363 yI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~-pe~~~~~iQl~~a~Yr~  441 (606)
T KOG0547|consen  363 YIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAISLD-PENAYAYIQLCCALYRQ  441 (606)
T ss_pred             HHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHH
Confidence            66677788888888888888887653   377777777777777788999998888877653 12334444444444577


Q ss_pred             cchhhHHHHHHHHHHhCcccchHHHHHHHHHHHhcCChhhhc----------cc-------hhhH-HHHHHHHHhcCChh
Q 036068           86 RALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ----------KD-------KFSW-TTMIVGLAISGNGD  147 (178)
Q Consensus        86 ~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~----------~~-------~~~~-~~li~~~~~~~~~~  147 (178)
                      ++++++...|++.++.- +..+.+|+..-..+.-.+++++|.          |+       ..++ +.-+..+.-.+++.
T Consensus       442 ~k~~~~m~~Fee~kkkF-P~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~qwk~d~~  520 (606)
T KOG0547|consen  442 HKIAESMKTFEEAKKKF-PNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQWKEDIN  520 (606)
T ss_pred             HHHHHHHHHHHHHHHhC-CCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhhchhhhHH
Confidence            88999999999988764 556889999999999999998887          11       1111 11111222448888


Q ss_pred             HHHHHHHHHHH
Q 036068          148 KALDMFSQMLR  158 (178)
Q Consensus       148 ~a~~~~~~m~~  158 (178)
                      .|.+++++..+
T Consensus       521 ~a~~Ll~KA~e  531 (606)
T KOG0547|consen  521 QAENLLRKAIE  531 (606)
T ss_pred             HHHHHHHHHHc
Confidence            99999888775

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=96.53  E-value=0.057  Score=45.28  Aligned_cols=118  Identities=7%  Similarity=0.018  Sum_probs=78.9

Q ss_pred             hHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHHhccccchhhHHHHHHHHHHhCcc-----cchHHHHH
Q 036068           38 VLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVK-----NDIFAGNA  112 (178)
Q Consensus        38 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~-----~~~~~~~~  112 (178)
                      ..+-.|..+|-+.|+.++|.++|+++.+.. +-|+.+.|.+.-.+... ++++|.+++....+.-+.     .=...|..
T Consensus       117 ~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~~i~~kq~~~~~e~W~k  194 (906)
T PRK14720        117 LALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYLKKAIYRFIKKKQYVGIEEIWSK  194 (906)
T ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHhhhcchHHHHHHHH
Confidence            456667778888899999999999998887 45788888888888888 888888888766554221     11111222


Q ss_pred             HHHHHHhcCChhh-------------hccchhhHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 036068          113 LIDMYCICADVEK-------------AQKDKFSWTTMIVGLAISGNGDKALDMFSQMLRA  159 (178)
Q Consensus       113 ll~~~~~~~~~~~-------------a~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~  159 (178)
                      ++..=.  .+.+.             -..-+.++-.+-..|-..++++++.++++.+++.
T Consensus       195 ~~~~~~--~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~  252 (906)
T PRK14720        195 LVHYNS--DDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEH  252 (906)
T ss_pred             HHhcCc--ccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhc
Confidence            221100  01111             0034556666777888888999999999999875

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=96.49  E-value=0.18  Score=35.93  Aligned_cols=62  Identities=11%  Similarity=0.017  Sum_probs=38.5

Q ss_pred             hhHHHHHHHHHHhcCChhHHHHHhccCCC--CChh-HH---HHHHHHHhhcCChhHHHHHHHHhHhCC
Q 036068            6 VISWTAIVSRYINRGQVDIARQCFDQMPE--RDYV-LW---TAMIDGYLRVNRFREALTLFQEMQTSN   67 (178)
Q Consensus         6 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~--~~~~-~~---~~li~~~~~~~~~~~a~~~~~~m~~~~   67 (178)
                      ...+-.....+.+.|++++|.+.|+++..  |+.. .-   -.+..++.+.+++++|...+++..+..
T Consensus        32 ~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~   99 (243)
T PRK10866         32 PSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN   99 (243)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Confidence            33333345555667888888888887754  3221 11   234566677888888888888876653

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=96.48  E-value=0.16  Score=35.11  Aligned_cols=148  Identities=9%  Similarity=0.040  Sum_probs=80.6

Q ss_pred             CCcchhHHHHHHHHHHhcCChhHHHHHhccCCC--C----ChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHH
Q 036068            2 KNKDVISWTAIVSRYINRGQVDIARQCFDQMPE--R----DYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTI   75 (178)
Q Consensus         2 ~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~--~----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~   75 (178)
                      |+-+...+-.....+.+.|++++|.+.|+++..  |    -....-.+..++.+.|++++|...++++.+.--.....-+
T Consensus         1 p~~~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~   80 (203)
T PF13525_consen    1 PEDTAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADY   80 (203)
T ss_dssp             ----HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHH
T ss_pred             CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhh
Confidence            444555555567778889999999999999874  2    2334456778899999999999999998765311112222


Q ss_pred             HHHHHHhc-------------cccchhhHHHHHHHHHHhCcccchHHHH---HHHHHHHhcCChhhhccchhhHHHHHHH
Q 036068           76 VSILTARA-------------NLRALDLGEWIKTYIDKNKVKNDIFAGN---ALIDMYCICADVEKAQKDKFSWTTMIVG  139 (178)
Q Consensus        76 ~~ll~~~~-------------~~~~~~~a~~~~~~m~~~~~~~~~~~~~---~ll~~~~~~~~~~~a~~~~~~~~~li~~  139 (178)
                      ...+.+.+             ..+...+|...|+.+++.-+.. ..+-.   .+...--+....+         -.+..-
T Consensus        81 A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S-~y~~~A~~~l~~l~~~la~~e---------~~ia~~  150 (203)
T PF13525_consen   81 ALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNS-EYAEEAKKRLAELRNRLAEHE---------LYIARF  150 (203)
T ss_dssp             HHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTS-TTHHHHHHHHHHHHHHHHHHH---------HHHHHH
T ss_pred             HHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCc-hHHHHHHHHHHHHHHHHHHHH---------HHHHHH
Confidence            22333222             1223456777777777664332 21111   1111111111111         124456


Q ss_pred             HHhcCChhHHHHHHHHHHHc
Q 036068          140 LAISGNGDKALDMFSQMLRA  159 (178)
Q Consensus       140 ~~~~~~~~~a~~~~~~m~~~  159 (178)
                      |.+.|.+..|..-++.+++.
T Consensus       151 Y~~~~~y~aA~~r~~~v~~~  170 (203)
T PF13525_consen  151 YYKRGKYKAAIIRFQYVIEN  170 (203)
T ss_dssp             HHCTT-HHHHHHHHHHHHHH
T ss_pred             HHHcccHHHHHHHHHHHHHH
Confidence            77777777777777777765

>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]

Probab=96.47  E-value=0.26  Score=38.86  Aligned_cols=29  Identities=17%  Similarity=0.211  Sum_probs=17.9

Q ss_pred             hhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 036068          130 KFSWTTMIVGLAISGNGDKALDMFSQMLR  158 (178)
Q Consensus       130 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~  158 (178)
                      ...|..+|.--..-|+...+..+-+++..
T Consensus       472 ~~Iw~r~l~yES~vGdL~si~~lekR~~~  500 (656)
T KOG1914|consen  472 KEIWDRMLEYESNVGDLNSILKLEKRRFT  500 (656)
T ss_pred             HHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence            35566666666666666666666666543

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=96.44  E-value=0.079  Score=38.39  Aligned_cols=99  Identities=8%  Similarity=0.026  Sum_probs=63.2

Q ss_pred             cchhHHHHHHHHHHhcCChhHHHHHhccCCC---CChhHHHHHHHHHhhc---CChhHHHHHHHHhHhCCCCCcHHHHHH
Q 036068            4 KDVISWTAIVSRYINRGQVDIARQCFDQMPE---RDYVLWTAMIDGYLRV---NRFREALTLFQEMQTSNIMGDEFTIVS   77 (178)
Q Consensus         4 p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~---~~~~~a~~~~~~m~~~~~~~~~~~~~~   77 (178)
                      -|+..|..|-..|.+.|+++.|..-|.+-.+   +|...+..+-+++...   ....++..+|++..+.. .-++.+...
T Consensus       154 ~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D-~~~iral~l  232 (287)
T COG4235         154 GDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALD-PANIRALSL  232 (287)
T ss_pred             CCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcC-CccHHHHHH
Confidence            3556677777777777777777777775542   4555555555544433   24566777777776654 234555555


Q ss_pred             HHHHhccccchhhHHHHHHHHHHhCc
Q 036068           78 ILTARANLRALDLGEWIKTYIDKNKV  103 (178)
Q Consensus        78 ll~~~~~~~~~~~a~~~~~~m~~~~~  103 (178)
                      +-..+...|++.+|...|+.|.+...
T Consensus       233 LA~~afe~g~~~~A~~~Wq~lL~~lp  258 (287)
T COG4235         233 LAFAAFEQGDYAEAAAAWQMLLDLLP  258 (287)
T ss_pred             HHHHHHHcccHHHHHHHHHHHHhcCC
Confidence            66667777777777777777777653

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=96.44  E-value=0.041  Score=42.31  Aligned_cols=63  Identities=10%  Similarity=-0.009  Sum_probs=53.2

Q ss_pred             cchhHHHHHHHHHHhcCChhHHHHHhccCC--CCCh----hHHHHHHHHHhhcCChhHHHHHHHHhHhC
Q 036068            4 KDVISWTAIVSRYINRGQVDIARQCFDQMP--ERDY----VLWTAMIDGYLRVNRFREALTLFQEMQTS   66 (178)
Q Consensus         4 p~~~~~~~li~~~~~~~~~~~a~~~~~~m~--~~~~----~~~~~li~~~~~~~~~~~a~~~~~~m~~~   66 (178)
                      .+...|+.+-.+|.+.|++++|+..|++..  .|+.    .+|..+-.+|.+.|+.++|.+.+++..+.
T Consensus        73 ~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel  141 (453)
T PLN03098         73 KTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD  141 (453)
T ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            456678999999999999999999999854  3543    35889999999999999999999998775

>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]

Probab=96.44  E-value=0.43  Score=39.75  Aligned_cols=71  Identities=14%  Similarity=0.201  Sum_probs=54.3

Q ss_pred             HhcCChhHHHHHhccCCCC---ChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHHhccccchh
Q 036068           17 INRGQVDIARQCFDQMPER---DYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANLRALD   89 (178)
Q Consensus        17 ~~~~~~~~a~~~~~~m~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~   89 (178)
                      .|.|+.++|..+++....+   |..|...+-..|...+..++|..+|++....  -|+..-...++.+|.|.+++.
T Consensus        54 ~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk  127 (932)
T KOG2053|consen   54 FRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVHLYERANQK--YPSEELLYHLFMAYVREKSYK  127 (932)
T ss_pred             HHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHH
Confidence            4778888888888776542   7778888888888888888888888887655  467777777777777776654

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=96.41  E-value=0.1  Score=41.35  Aligned_cols=124  Identities=6%  Similarity=-0.139  Sum_probs=84.2

Q ss_pred             CCcchhHHHHHHHHHHhcCC-----hhHHHHHhccCCC--C-ChhHHHHHHHHHhhcC--------ChhHHHHHHHHhHh
Q 036068            2 KNKDVISWTAIVSRYINRGQ-----VDIARQCFDQMPE--R-DYVLWTAMIDGYLRVN--------RFREALTLFQEMQT   65 (178)
Q Consensus         2 ~~p~~~~~~~li~~~~~~~~-----~~~a~~~~~~m~~--~-~~~~~~~li~~~~~~~--------~~~~a~~~~~~m~~   65 (178)
                      |+.|...|...+++.....+     .+.|.++|++..+  | +...|..+..++....        +...+.+..++...
T Consensus       333 ~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~a  412 (517)
T PRK10153        333 LPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVA  412 (517)
T ss_pred             CCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhh
Confidence            45778889999988655332     6789999998864  5 3344554444333221        12334444443333


Q ss_pred             C-CCCCcHHHHHHHHHHhccccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHhcCChhhhc
Q 036068           66 S-NIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ  127 (178)
Q Consensus        66 ~-~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~  127 (178)
                      . ....+...|.++--.....|++++|...+++....+  |+...|..+-..+...|+.++|.
T Consensus       413 l~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~  473 (517)
T PRK10153        413 LPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAA  473 (517)
T ss_pred             cccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHH
Confidence            2 123445677777666667799999999999999887  46788999999999999999987

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=96.41  E-value=0.39  Score=38.93  Aligned_cols=146  Identities=18%  Similarity=0.143  Sum_probs=81.2

Q ss_pred             HHHHHHHhcCChhHHHHHhccCCC--C-ChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHHhccccc
Q 036068           11 AIVSRYINRGQVDIARQCFDQMPE--R-DYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANLRA   87 (178)
Q Consensus        11 ~li~~~~~~~~~~~a~~~~~~m~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~   87 (178)
                      ......-..|++..|..++...-+  | +...|-.-+..-+.+.+++.|..+|.+-...  .|+...|..-++.-.-.+.
T Consensus       589 M~ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~  666 (913)
T KOG0495|consen  589 MYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSI--SGTERVWMKSANLERYLDN  666 (913)
T ss_pred             HHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhh
Confidence            333444445566555555554432  1 4445555566666666777777777765553  4566666655555555666


Q ss_pred             hhhHHHHHHHHHHhCc---------------------------------ccchHHHHHHHHHHHhcCChhhhc-------
Q 036068           88 LDLGEWIKTYIDKNKV---------------------------------KNDIFAGNALIDMYCICADVEKAQ-------  127 (178)
Q Consensus        88 ~~~a~~~~~~m~~~~~---------------------------------~~~~~~~~~ll~~~~~~~~~~~a~-------  127 (178)
                      .++|.+++++..+.-.                                 +..+-.|-.+...--+.|.+..|.       
T Consensus       667 ~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrar  746 (913)
T KOG0495|consen  667 VEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRAR  746 (913)
T ss_pred             HHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHH
Confidence            6666666655544321                                 112222333333333333333332       


Q ss_pred             ----cchhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 036068          128 ----KDKFSWTTMIVGLAISGNGDKALDMFSQMLR  158 (178)
Q Consensus       128 ----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~  158 (178)
                          .+...|-..|+.-.+.|..+.|..+..+.+.
T Consensus       747 lkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQ  781 (913)
T KOG0495|consen  747 LKNPKNALLWLESIRMELRAGNKEQAELLMAKALQ  781 (913)
T ss_pred             hcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence                3677777777777788888877777766654

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=96.41  E-value=0.23  Score=36.19  Aligned_cols=167  Identities=8%  Similarity=0.012  Sum_probs=105.2

Q ss_pred             HHHHHHHHHHhcCChhHHHHHhccCC-------CC--ChhHHHHHHHHHhhcCChhHHHHHHHHhHh----CCCCCc--H
Q 036068            8 SWTAIVSRYINRGQVDIARQCFDQMP-------ER--DYVLWTAMIDGYLRVNRFREALTLFQEMQT----SNIMGD--E   72 (178)
Q Consensus         8 ~~~~li~~~~~~~~~~~a~~~~~~m~-------~~--~~~~~~~li~~~~~~~~~~~a~~~~~~m~~----~~~~~~--~   72 (178)
                      .|......|-..+++++|.+.|.+.-       .+  -...|......|.+. ++++|...+++..+    .| .|+  .
T Consensus        37 ~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G-~~~~aA  114 (282)
T PF14938_consen   37 LYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREAG-RFSQAA  114 (282)
T ss_dssp             HHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT--HHHHH
T ss_pred             HHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcC-cHHHHH
Confidence            46777777888888888887777653       21  223455555565555 88888888887543    34 334  3


Q ss_pred             HHHHHHHHHhccc-cchhhHHHHHHHHHHh----Cc-ccchHHHHHHHHHHHhcCChhhhc-------------c----c
Q 036068           73 FTIVSILTARANL-RALDLGEWIKTYIDKN----KV-KNDIFAGNALIDMYCICADVEKAQ-------------K----D  129 (178)
Q Consensus        73 ~~~~~ll~~~~~~-~~~~~a~~~~~~m~~~----~~-~~~~~~~~~ll~~~~~~~~~~~a~-------------~----~  129 (178)
                      ..+..+-..|-+. +++++|.+.|+...+.    |- ......+..+...+.+.|++++|.             +    +
T Consensus       115 ~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~  194 (282)
T PF14938_consen  115 KCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYS  194 (282)
T ss_dssp             HHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchh
Confidence            4777888888888 8999999999776542    31 112455677788899999999987             1    1


Q ss_pred             hh-hHHHHHHHHHhcCChhHHHHHHHHHHHc--CCCCC--hhHHHHHHhhhh
Q 036068          130 KF-SWTTMIVGLAISGNGDKALDMFSQMLRA--SIKPD--EVAYVGVLSACT  176 (178)
Q Consensus       130 ~~-~~~~li~~~~~~~~~~~a~~~~~~m~~~--g~~p~--~~t~~~li~a~~  176 (178)
                      .. .|-..+..+...||...|.+.+++....  ++..+  ......||.||-
T Consensus       195 ~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~  246 (282)
T PF14938_consen  195 AKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYE  246 (282)
T ss_dssp             HHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHH
Confidence            11 2223344555679999999999998753  44333  355666666664

>KOG4570 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.40  E-value=0.019  Score=41.97  Aligned_cols=90  Identities=13%  Similarity=0.154  Sum_probs=70.2

Q ss_pred             HHHHHHHHHhcCChhHHHHHhccCCC-C--------ChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHH
Q 036068            9 WTAIVSRYINRGQVDIARQCFDQMPE-R--------DYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSIL   79 (178)
Q Consensus         9 ~~~li~~~~~~~~~~~a~~~~~~m~~-~--------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll   79 (178)
                      -..++..-....+++++...+-+++. |        +.++|-.++..|    +.++++.++..=...|+-||..+++.+|
T Consensus        67 Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irlllky----~pq~~i~~l~npIqYGiF~dqf~~c~l~  142 (418)
T KOG4570|consen   67 VDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLLLKY----DPQKAIYTLVNPIQYGIFPDQFTFCLLM  142 (418)
T ss_pred             hhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHHHHcc----ChHHHHHHHhCcchhccccchhhHHHHH
Confidence            34445555556778888888777764 1        445555555444    7889999998888999999999999999


Q ss_pred             HHhccccchhhHHHHHHHHHHhC
Q 036068           80 TARANLRALDLGEWIKTYIDKNK  102 (178)
Q Consensus        80 ~~~~~~~~~~~a~~~~~~m~~~~  102 (178)
                      +.+.+.+++.+|.++...|....
T Consensus       143 D~flk~~n~~~aa~vvt~~~~qe  165 (418)
T KOG4570|consen  143 DSFLKKENYKDAASVVTEVMMQE  165 (418)
T ss_pred             HHHHhcccHHHHHHHHHHHHHHH
Confidence            99999999999999998888765

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=96.39  E-value=0.2  Score=39.56  Aligned_cols=142  Identities=12%  Similarity=0.150  Sum_probs=87.2

Q ss_pred             HHHhcCChhHHHHHhccCCC--C-ChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCc-HHHHHHHHHHhccccchh-
Q 036068           15 RYINRGQVDIARQCFDQMPE--R-DYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGD-EFTIVSILTARANLRALD-   89 (178)
Q Consensus        15 ~~~~~~~~~~a~~~~~~m~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~ll~~~~~~~~~~-   89 (178)
                      -+.+.|++.+|.-.|+...+  | +...|.-|-..-..+++-..|+..+++.++..  |+ ....-.|.-.|...|.-. 
T Consensus       294 ~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld--P~NleaLmaLAVSytNeg~q~~  371 (579)
T KOG1125|consen  294 NLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELD--PTNLEALMALAVSYTNEGLQNQ  371 (579)
T ss_pred             HHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC--CccHHHHHHHHHHHhhhhhHHH
Confidence            35577888888888876543  3 45566666666666666666776666665542  22 222223333333332222 


Q ss_pred             ----------------------------------------hHHHHHHHH-HHhCcccchHHHHHHHHHHHhcCChhhhc-
Q 036068           90 ----------------------------------------LGEWIKTYI-DKNKVKNDIFAGNALIDMYCICADVEKAQ-  127 (178)
Q Consensus        90 ----------------------------------------~a~~~~~~m-~~~~~~~~~~~~~~ll~~~~~~~~~~~a~-  127 (178)
                                                              ...++|-.+ .+.+.++|+.+...|=-.|--.|++++|. 
T Consensus       372 Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiD  451 (579)
T KOG1125|consen  372 ALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVD  451 (579)
T ss_pred             HHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHH
Confidence                                                    233333222 23333456666666666666777777776 


Q ss_pred             ----------cchhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 036068          128 ----------KDKFSWTTMIVGLAISGNGDKALDMFSQMLR  158 (178)
Q Consensus       128 ----------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~  158 (178)
                                .|...||.|-..++...+.++|+.-|++.++
T Consensus       452 cf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALq  492 (579)
T KOG1125|consen  452 CFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQ  492 (579)
T ss_pred             HHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHh
Confidence                      3788889988888888888999988888875

>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]

Probab=96.38  E-value=0.079  Score=43.80  Aligned_cols=106  Identities=15%  Similarity=0.152  Sum_probs=65.8

Q ss_pred             HhcCChhHHHHHhccCCCC-ChhHHHHHHHHHh--hcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHHhccccchhhHHH
Q 036068           17 INRGQVDIARQCFDQMPER-DYVLWTAMIDGYL--RVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANLRALDLGEW   93 (178)
Q Consensus        17 ~~~~~~~~a~~~~~~m~~~-~~~~~~~li~~~~--~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~   93 (178)
                      ...+++.+|.+...++.++ .-..|...+.++.  +.|+.++|..+++.....+.. |..|..++-.+|.+.++.++|..
T Consensus        20 ld~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~~~~   98 (932)
T KOG2053|consen   20 LDSSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDEAVH   98 (932)
T ss_pred             hhhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhHHHH
Confidence            3456666676666665432 2223444555443  677777777777777666544 77777777777777788888888


Q ss_pred             HHHHHHHhCcccchHHHHHHHHHHHhcCChhh
Q 036068           94 IKTYIDKNKVKNDIFAGNALIDMYCICADVEK  125 (178)
Q Consensus        94 ~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~  125 (178)
                      +|++..+..  |+......+..+|.|.+++.+
T Consensus        99 ~Ye~~~~~~--P~eell~~lFmayvR~~~yk~  128 (932)
T KOG2053|consen   99 LYERANQKY--PSEELLYHLFMAYVREKSYKK  128 (932)
T ss_pred             HHHHHHhhC--CcHHHHHHHHHHHHHHHHHHH
Confidence            877776653  335555555555555554443

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=96.37  E-value=0.33  Score=37.65  Aligned_cols=125  Identities=12%  Similarity=0.046  Sum_probs=73.8

Q ss_pred             hcCChhHHHHHhccCCC---CChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHHhccccchhhHHHH
Q 036068           18 NRGQVDIARQCFDQMPE---RDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANLRALDLGEWI   94 (178)
Q Consensus        18 ~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~   94 (178)
                      ..|++++|++.|-++..   .+..+.--+...|....+...|++++.+.... ++-|......|...|-+.|+..+|++.
T Consensus       536 ~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~~sl-ip~dp~ilskl~dlydqegdksqafq~  614 (840)
T KOG2003|consen  536 ALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQANSL-IPNDPAILSKLADLYDQEGDKSQAFQC  614 (840)
T ss_pred             HhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCHHHHHHHHHHhhcccchhhhhhh
Confidence            45667777776666543   34444444555555556666666655554332 233445555555555555555544443


Q ss_pred             ----------------------------------HHHHHHhCcccchHHHHHHHHHH-HhcCChhhhc-----------c
Q 036068           95 ----------------------------------KTYIDKNKVKNDIFAGNALIDMY-CICADVEKAQ-----------K  128 (178)
Q Consensus        95 ----------------------------------~~~m~~~~~~~~~~~~~~ll~~~-~~~~~~~~a~-----------~  128 (178)
                                                        |+..  .=+.|+..-|..++..+ .+.|++.+|.           .
T Consensus       615 ~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~eka--aliqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpe  692 (840)
T KOG2003|consen  615 HYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKA--ALIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPE  692 (840)
T ss_pred             hhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHH--HhcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCcc
Confidence                                              3222  23578888898887654 4578998887           3


Q ss_pred             chhhHHHHHHHHHhcCC
Q 036068          129 DKFSWTTMIVGLAISGN  145 (178)
Q Consensus       129 ~~~~~~~li~~~~~~~~  145 (178)
                      |..+..-|++.+...|-
T Consensus       693 dldclkflvri~~dlgl  709 (840)
T KOG2003|consen  693 DLDCLKFLVRIAGDLGL  709 (840)
T ss_pred             chHHHHHHHHHhccccc
Confidence            66777777776665553

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.34  E-value=0.23  Score=35.45  Aligned_cols=147  Identities=16%  Similarity=0.173  Sum_probs=101.4

Q ss_pred             HHHHHHHHHHhcCChhHHHHHhccCCC--CChh----HHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHH
Q 036068            8 SWTAIVSRYINRGQVDIARQCFDQMPE--RDYV----LWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTA   81 (178)
Q Consensus         8 ~~~~li~~~~~~~~~~~a~~~~~~m~~--~~~~----~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~   81 (178)
                      .|-.+.-+....|+.+.|...++++..  |+..    ....++.   ..|++++|.++++.+.+.+ +-|..++--=+-.
T Consensus        54 l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lE---a~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAi  129 (289)
T KOG3060|consen   54 LYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLE---ATGNYKEAIEYYESLLEDD-PTDTVIRKRKLAI  129 (289)
T ss_pred             HHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHH---HhhchhhHHHHHHHHhccC-cchhHHHHHHHHH
Confidence            356666777788999999999888764  3222    2333333   4578999999999999987 4456666644444


Q ss_pred             hccccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHhcCChhhhc----------cc-hhhHHHHHHHHHhc---CChh
Q 036068           82 RANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ----------KD-KFSWTTMIVGLAIS---GNGD  147 (178)
Q Consensus        82 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~----------~~-~~~~~~li~~~~~~---~~~~  147 (178)
                      ....|+--+|.+-+....+. +..|...|.-+-..|...|++++|.          |. ...+..+...+--.   .+.+
T Consensus       130 lka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~  208 (289)
T KOG3060|consen  130 LKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLE  208 (289)
T ss_pred             HHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHH
Confidence            55556656777666665554 3679999999999999999999997          43 33333444433333   4567


Q ss_pred             HHHHHHHHHHHc
Q 036068          148 KALDMFSQMLRA  159 (178)
Q Consensus       148 ~a~~~~~~m~~~  159 (178)
                      .+.++|.+.++.
T Consensus       209 ~arkyy~~alkl  220 (289)
T KOG3060|consen  209 LARKYYERALKL  220 (289)
T ss_pred             HHHHHHHHHHHh
Confidence            788888888765

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.33  E-value=0.095  Score=39.23  Aligned_cols=155  Identities=14%  Similarity=0.115  Sum_probs=82.1

Q ss_pred             HHHHHHHhcCChhHHHHHhccCCCCChhHHHHHHHHHhhc-------CChhHHHHHHHHhHhCCCCCc----H-------
Q 036068           11 AIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRV-------NRFREALTLFQEMQTSNIMGD----E-------   72 (178)
Q Consensus        11 ~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~li~~~~~~-------~~~~~a~~~~~~m~~~~~~~~----~-------   72 (178)
                      .|+-.|.+++++.+|..+.+++..-++.-|-.=--.++..       ....-|...|+-.-+++..-|    .       
T Consensus       290 NL~iYyL~q~dVqeA~~L~Kdl~PttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~f  369 (557)
T KOG3785|consen  290 NLIIYYLNQNDVQEAISLCKDLDPTTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYF  369 (557)
T ss_pred             hheeeecccccHHHHHHHHhhcCCCChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHH
Confidence            4566788999999999999988754444332211112222       224455666655544432211    1       


Q ss_pred             ---------HHHH---------------HHHHHhccccchhhHHHHHHHHHHhCcccchHHHH-HHHHHHHhcCChhhhc
Q 036068           73 ---------FTIV---------------SILTARANLRALDLGEWIKTYIDKNKVKNDIFAGN-ALIDMYCICADVEKAQ  127 (178)
Q Consensus        73 ---------~~~~---------------~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~-~ll~~~~~~~~~~~a~  127 (178)
                               .+|.               .+.++.+..|.+.+|+++|-.+..-.++ +..+|. .+..+|.+++.++.|.
T Consensus       370 FL~~qFddVl~YlnSi~sYF~NdD~Fn~N~AQAk~atgny~eaEelf~~is~~~ik-n~~~Y~s~LArCyi~nkkP~lAW  448 (557)
T KOG3785|consen  370 FLSFQFDDVLTYLNSIESYFTNDDDFNLNLAQAKLATGNYVEAEELFIRISGPEIK-NKILYKSMLARCYIRNKKPQLAW  448 (557)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCcchhhhHHHHHHHHhcChHHHHHHHhhhcChhhh-hhHHHHHHHHHHHHhcCCchHHH
Confidence                     1111               2334555556667777776555433333 344444 3455677777776665


Q ss_pred             ---------cchhhH-HHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhHH
Q 036068          128 ---------KDKFSW-TTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAY  168 (178)
Q Consensus       128 ---------~~~~~~-~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~  168 (178)
                               .+..+. ..+..-|-+.++|--|-..|+++...  .|+.+-|
T Consensus       449 ~~~lk~~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~l--DP~pEnW  497 (557)
T KOG3785|consen  449 DMMLKTNTPSERFSLLQLIANDCYKANEFYYAAKAFDELEIL--DPTPENW  497 (557)
T ss_pred             HHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHcc--CCCcccc
Confidence                     112222 22335556677777776677666543  4554433

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=96.26  E-value=0.021  Score=32.15  Aligned_cols=60  Identities=18%  Similarity=0.288  Sum_probs=49.8

Q ss_pred             HHHHHhcCChhHHHHHhccCCC--C-ChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHH
Q 036068           13 VSRYINRGQVDIARQCFDQMPE--R-DYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFT   74 (178)
Q Consensus        13 i~~~~~~~~~~~a~~~~~~m~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~   74 (178)
                      -..+.+.+++++|.++++.+.+  | +...|...-..+.+.|++++|.+.|++..+.+  |+...
T Consensus         2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~--p~~~~   64 (73)
T PF13371_consen    2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELS--PDDPD   64 (73)
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHC--CCcHH
Confidence            3568899999999999998874  3 67778788889999999999999999998764  55444

>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=96.16  E-value=0.089  Score=39.05  Aligned_cols=106  Identities=12%  Similarity=0.030  Sum_probs=79.8

Q ss_pred             HHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHHhccccchhhHHHHHHHHHHhCcccchHHHHHHHHHHH
Q 036068           39 LWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYC  118 (178)
Q Consensus        39 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~  118 (178)
                      +.+.-|.-+...|+...|.++-++.   + .|+..-|..-++++++.++|++-+++-..      .-+|.-|...+..+.
T Consensus       179 Sl~~Ti~~li~~~~~k~A~kl~k~F---k-v~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~  248 (319)
T PF04840_consen  179 SLNDTIRKLIEMGQEKQAEKLKKEF---K-VPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACL  248 (319)
T ss_pred             CHHHHHHHHHHCCCHHHHHHHHHHc---C-CcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHH
Confidence            3444566667778887777765554   2 47999999999999999999887776322      234566888999999


Q ss_pred             hcCChhhhc---cchhhHHHHHHHHHhcCChhHHHHHHHH
Q 036068          119 ICADVEKAQ---KDKFSWTTMIVGLAISGNGDKALDMFSQ  155 (178)
Q Consensus       119 ~~~~~~~a~---~~~~~~~~li~~~~~~~~~~~a~~~~~~  155 (178)
                      +.|+..+|.   |. ..+..-+..|.+.|++.+|.+.-.+
T Consensus       249 ~~~~~~eA~~yI~k-~~~~~rv~~y~~~~~~~~A~~~A~~  287 (319)
T PF04840_consen  249 KYGNKKEASKYIPK-IPDEERVEMYLKCGDYKEAAQEAFK  287 (319)
T ss_pred             HCCCHHHHHHHHHh-CChHHHHHHHHHCCCHHHHHHHHHH
Confidence            999998887   33 4558889999999999999875433

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=96.09  E-value=0.35  Score=35.20  Aligned_cols=110  Identities=10%  Similarity=0.077  Sum_probs=71.1

Q ss_pred             ChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHHhccc---cchhhHHHHHHHHHHhCcccchHHHHH
Q 036068           36 DYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANL---RALDLGEWIKTYIDKNKVKNDIFAGNA  112 (178)
Q Consensus        36 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~---~~~~~a~~~~~~m~~~~~~~~~~~~~~  112 (178)
                      |...|-.|-..|...|+.+.|...|..-.+.. .++...+..+-.++...   ....++..++++..+....        
T Consensus       155 d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~--------  225 (287)
T COG4235         155 DAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPA--------  225 (287)
T ss_pred             CchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCc--------
Confidence            77778888888888888888888887766543 23455555555554322   2355777777777765422        


Q ss_pred             HHHHHHhcCChhhhccchhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhHHHHHH
Q 036068          113 LIDMYCICADVEKAQKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVL  172 (178)
Q Consensus       113 ll~~~~~~~~~~~a~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li  172 (178)
                                      |+.+-..|-..+...|++.+|...++.|++.  -|.......+|
T Consensus       226 ----------------~iral~lLA~~afe~g~~~~A~~~Wq~lL~~--lp~~~~rr~~i  267 (287)
T COG4235         226 ----------------NIRALSLLAFAAFEQGDYAEAAAAWQMLLDL--LPADDPRRSLI  267 (287)
T ss_pred             ----------------cHHHHHHHHHHHHHcccHHHHHHHHHHHHhc--CCCCCchHHHH
Confidence                            3444555666777788888888888888875  34333343333

>PRK04841 transcriptional regulator MalT; Provisional

Probab=96.06  E-value=0.65  Score=39.44  Aligned_cols=146  Identities=11%  Similarity=0.033  Sum_probs=96.0

Q ss_pred             HHHHHhcCChhHHHHHhccCCC----CCh----hHHHHHHHHHhhcCChhHHHHHHHHhHhC----CC-CCcHHHHHHHH
Q 036068           13 VSRYINRGQVDIARQCFDQMPE----RDY----VLWTAMIDGYLRVNRFREALTLFQEMQTS----NI-MGDEFTIVSIL   79 (178)
Q Consensus        13 i~~~~~~~~~~~a~~~~~~m~~----~~~----~~~~~li~~~~~~~~~~~a~~~~~~m~~~----~~-~~~~~~~~~ll   79 (178)
                      -..+...|++++|...+++..+    .+.    ...+.+-..+...|++++|...+++....    |- .+-..+...+.
T Consensus       459 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la  538 (903)
T PRK04841        459 AQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQS  538 (903)
T ss_pred             HHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHH
Confidence            3445678999999888876432    222    23455666677899999999999887542    21 11123455566


Q ss_pred             HHhccccchhhHHHHHHHHHH----hCcc--c-chHHHHHHHHHHHhcCChhhhc--------------c--chhhHHHH
Q 036068           80 TARANLRALDLGEWIKTYIDK----NKVK--N-DIFAGNALIDMYCICADVEKAQ--------------K--DKFSWTTM  136 (178)
Q Consensus        80 ~~~~~~~~~~~a~~~~~~m~~----~~~~--~-~~~~~~~ll~~~~~~~~~~~a~--------------~--~~~~~~~l  136 (178)
                      ..+...|++++|...+++...    .+..  + ....+..+-..+...|++++|.              +  ....+..+
T Consensus       539 ~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l  618 (903)
T PRK04841        539 EILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAML  618 (903)
T ss_pred             HHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHH
Confidence            678889999999998876554    2221  1 1223444555677779998885              1  12233445


Q ss_pred             HHHHHhcCChhHHHHHHHHHHH
Q 036068          137 IVGLAISGNGDKALDMFSQMLR  158 (178)
Q Consensus       137 i~~~~~~~~~~~a~~~~~~m~~  158 (178)
                      .......|+.++|.+.+++...
T Consensus       619 a~~~~~~G~~~~A~~~l~~a~~  640 (903)
T PRK04841        619 AKISLARGDLDNARRYLNRLEN  640 (903)
T ss_pred             HHHHHHcCCHHHHHHHHHHHHH
Confidence            5667789999999999988864

>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va

Probab=95.91  E-value=0.079  Score=31.79  Aligned_cols=63  Identities=11%  Similarity=-0.015  Sum_probs=50.8

Q ss_pred             ChhHHHHHHHHhHhCCCCCcHHHHHHHHHHhccccchhhHHHHHHHHHH-hCcccchHHHHHHHHH
Q 036068           52 RFREALTLFQEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDK-NKVKNDIFAGNALIDM  116 (178)
Q Consensus        52 ~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~-~~~~~~~~~~~~ll~~  116 (178)
                      +.=++.+.++.+....+.|+.....+.+++|.+.+++..|.++++..+. .|.  ....|..+++-
T Consensus        22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~--~~~~y~~~lqe   85 (103)
T cd00923          22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCGA--HKEIYPYILQE   85 (103)
T ss_pred             cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccC--chhhHHHHHHH
Confidence            3445777788888999999999999999999999999999999998874 332  34467776653

Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=95.90  E-value=0.13  Score=40.53  Aligned_cols=60  Identities=12%  Similarity=-0.059  Sum_probs=24.0

Q ss_pred             HHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHHhccccchhhHHHHHHHHHH
Q 036068           40 WTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDK  100 (178)
Q Consensus        40 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~  100 (178)
                      ...|--.|--.|++++|.++|+..+... +-|...||-|--.++...+.++|...|.+..+
T Consensus       433 Q~~LGVLy~ls~efdraiDcf~~AL~v~-Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALq  492 (579)
T KOG1125|consen  433 QSGLGVLYNLSGEFDRAVDCFEAALQVK-PNDYLLWNRLGATLANGNRSEEAISAYNRALQ  492 (579)
T ss_pred             HhhhHHHHhcchHHHHHHHHHHHHHhcC-CchHHHHHHhhHHhcCCcccHHHHHHHHHHHh
Confidence            3333333333444444444444443332 12233444444444444444444444444443

>PF13170 DUF4003: Protein of unknown function (DUF4003)

Probab=95.90  E-value=0.14  Score=37.60  Aligned_cols=116  Identities=14%  Similarity=0.246  Sum_probs=70.3

Q ss_pred             hhHHHHHHHHhHhCCCCCcHHHHHHHHHHhcc--cc----chhhHHHHHHHHHHhCc---ccchHHHHHHHHHHHhcCCh
Q 036068           53 FREALTLFQEMQTSNIMGDEFTIVSILTARAN--LR----ALDLGEWIKTYIDKNKV---KNDIFAGNALIDMYCICADV  123 (178)
Q Consensus        53 ~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~--~~----~~~~a~~~~~~m~~~~~---~~~~~~~~~ll~~~~~~~~~  123 (178)
                      +++..++++.|.+.|...+..+|.+.......  ..    ...++..+|+.|++..+   .++..++..++..  ..++.
T Consensus        78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~  155 (297)
T PF13170_consen   78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV  155 (297)
T ss_pred             HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence            56677888888999988888777764444433  22    24578889999998764   3445556666544  33334


Q ss_pred             hhhc------------------cchhhHHHHHHHHHhcCC--hhHHHHHHHHHHHcCCCCChhHHHH
Q 036068          124 EKAQ------------------KDKFSWTTMIVGLAISGN--GDKALDMFSQMLRASIKPDEVAYVG  170 (178)
Q Consensus       124 ~~a~------------------~~~~~~~~li~~~~~~~~--~~~a~~~~~~m~~~g~~p~~~t~~~  170 (178)
                      +...                  .+......++...-...+  ..++.++++.+.+.|+++....|..
T Consensus       156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~  222 (297)
T PF13170_consen  156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPT  222 (297)
T ss_pred             HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccH
Confidence            3332                  122222222222222222  3478889999999998877766653

>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]

Probab=95.83  E-value=0.097  Score=37.93  Aligned_cols=77  Identities=8%  Similarity=0.002  Sum_probs=41.6

Q ss_pred             HHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHHhccccchhhHHHHHHHHHH-----hCcccchHHHHHH
Q 036068           39 LWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDK-----NKVKNDIFAGNAL  113 (178)
Q Consensus        39 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~-----~~~~~~~~~~~~l  113 (178)
                      ++.-++..+...|+.+.+.+.++++.... +-+...|..+|.+|.+.|+...|...|+.+.+     .|+.|.+.+....
T Consensus       155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y  233 (280)
T COG3629         155 ALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALY  233 (280)
T ss_pred             HHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHH
Confidence            44445555555555555555555555543 23455555555555555555555555554443     4555555555555


Q ss_pred             HHH
Q 036068          114 IDM  116 (178)
Q Consensus       114 l~~  116 (178)
                      ...
T Consensus       234 ~~~  236 (280)
T COG3629         234 EEI  236 (280)
T ss_pred             HHH
Confidence            444

>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=95.81  E-value=0.017  Score=37.35  Aligned_cols=52  Identities=10%  Similarity=0.012  Sum_probs=22.3

Q ss_pred             HHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHHhccccchhhHHHHH
Q 036068           44 IDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANLRALDLGEWIK   95 (178)
Q Consensus        44 i~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~   95 (178)
                      |..+.+.+..+....+++.+...+..-+....+.++..|++.++.++..+++
T Consensus        14 i~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L   65 (143)
T PF00637_consen   14 ISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFL   65 (143)
T ss_dssp             HHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTT
T ss_pred             HHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHc
Confidence            3334444444444444444444333333444445555555544444443333

These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.

>PRK15331 chaperone protein SicA; Provisional

Probab=95.80  E-value=0.071  Score=35.35  Aligned_cols=76  Identities=12%  Similarity=-0.063  Sum_probs=32.7

Q ss_pred             hcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHHhccccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHhcCChhhh
Q 036068           49 RVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKA  126 (178)
Q Consensus        49 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a  126 (178)
                      ..|++++|..+|+-+...+. -+..-+..|--++-..+++++|...|......+. -|+...-..-.+|...|+.+.|
T Consensus        49 ~~Gk~~eA~~~F~~L~~~d~-~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~-~dp~p~f~agqC~l~l~~~~~A  124 (165)
T PRK15331         49 NQGRLDEAETFFRFLCIYDF-YNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK-NDYRPVFFTGQCQLLMRKAAKA  124 (165)
T ss_pred             HCCCHHHHHHHHHHHHHhCc-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-CCCCccchHHHHHHHhCCHHHH
Confidence            44555555555555544331 1222233333333444555555555544333321 1222233334445555555554

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=95.72  E-value=0.033  Score=26.83  Aligned_cols=26  Identities=19%  Similarity=0.266  Sum_probs=22.4

Q ss_pred             hHHHHHHHHHhcCChhHHHHHHHHHH
Q 036068          132 SWTTMIVGLAISGNGDKALDMFSQML  157 (178)
Q Consensus       132 ~~~~li~~~~~~~~~~~a~~~~~~m~  157 (178)
                      +|+.|-..|.+.|++++|.++|++.+
T Consensus         1 al~~Lg~~~~~~g~~~~Ai~~y~~aL   26 (36)
T PF13176_consen    1 ALNNLGRIYRQQGDYEKAIEYYEQAL   26 (36)
T ss_dssp             HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            47888999999999999999999955

>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length

Probab=95.71  E-value=0.18  Score=38.92  Aligned_cols=147  Identities=7%  Similarity=0.099  Sum_probs=97.2

Q ss_pred             HHhcCChhHHHHHhccCCCC---C------hhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHHh--cc
Q 036068           16 YINRGQVDIARQCFDQMPER---D------YVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTAR--AN   84 (178)
Q Consensus        16 ~~~~~~~~~a~~~~~~m~~~---~------~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~--~~   84 (178)
                      +-+.+++.++..+|.++-+.   +      ...-+.+|++|... +.+.....+.+..+..  | ...|..+..+.  -+
T Consensus        16 Lqkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl~-nld~Me~~l~~l~~~~--~-~s~~l~LF~~L~~Y~   91 (549)
T PF07079_consen   16 LQKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFLN-NLDLMEKQLMELRQQF--G-KSAYLPLFKALVAYK   91 (549)
T ss_pred             HHHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHHh-hHHHHHHHHHHHHHhc--C-CchHHHHHHHHHHHH
Confidence            34678999999999988642   2      33455678888765 5677777777766542  3 34566666654  57


Q ss_pred             ccchhhHHHHHHHHHHh--CcccchHHHHHHHHHHHhcCChhhhccchhhHHHHHHHHHhcCChhHHHHHHHHHHHc---
Q 036068           85 LRALDLGEWIKTYIDKN--KVKNDIFAGNALIDMYCICADVEKAQKDKFSWTTMIVGLAISGNGDKALDMFSQMLRA---  159 (178)
Q Consensus        85 ~~~~~~a~~~~~~m~~~--~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~---  159 (178)
                      .+++++|.+.+..-...  +..+.--  +         -++....+|...=+..+.++...|++.++..++++|.+.   
T Consensus        92 ~k~~~kal~~ls~w~~~~~~~~~~~L--d---------~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llk  160 (549)
T PF07079_consen   92 QKEYRKALQALSVWKEQIKGTESPWL--D---------TNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLK  160 (549)
T ss_pred             hhhHHHHHHHHHHHHhhhcccccchh--h---------hhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhh
Confidence            78899999988776654  3333211  0         012222245555577888889999999999999888764   


Q ss_pred             -CCCCChhHHHHHHhhhhc
Q 036068          160 -SIKPDEVAYVGVLSACTH  177 (178)
Q Consensus       160 -g~~p~~~t~~~li~a~~~  177 (178)
                       ....+..+|+.++-.+++
T Consensus       161 rE~~w~~d~yd~~vlmlsr  179 (549)
T PF07079_consen  161 RECEWNSDMYDRAVLMLSR  179 (549)
T ss_pred             hhhcccHHHHHHHHHHHhH
Confidence             334788888876555554

Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=95.66  E-value=0.094  Score=38.05  Aligned_cols=99  Identities=8%  Similarity=0.003  Sum_probs=74.7

Q ss_pred             HHHhcCChhHHHHHhccCCC---CChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHHhccccchhhH
Q 036068           15 RYINRGQVDIARQCFDQMPE---RDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANLRALDLG   91 (178)
Q Consensus        15 ~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a   91 (178)
                      -+.+.++|.+|+..|.+..+   .|.+-|.-=-.+|.+.|.++.|++=-+.-.... +....+|..|=.+|...|++++|
T Consensus        90 ~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iD-p~yskay~RLG~A~~~~gk~~~A  168 (304)
T KOG0553|consen   90 KLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSID-PHYSKAYGRLGLAYLALGKYEEA  168 (304)
T ss_pred             HHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcC-hHHHHHHHHHHHHHHccCcHHHH
Confidence            35677889999999998764   478888888899999999999987655554443 22356899999999999999999


Q ss_pred             HHHHHHHHHhCcccchHHHHHHHHH
Q 036068           92 EWIKTYIDKNKVKNDIFAGNALIDM  116 (178)
Q Consensus        92 ~~~~~~m~~~~~~~~~~~~~~ll~~  116 (178)
                      .+.|+.....  +|+-.+|-.=+..
T Consensus       169 ~~aykKaLel--dP~Ne~~K~nL~~  191 (304)
T KOG0553|consen  169 IEAYKKALEL--DPDNESYKSNLKI  191 (304)
T ss_pred             HHHHHhhhcc--CCCcHHHHHHHHH
Confidence            9998877664  5665565554443

>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]

Probab=95.65  E-value=0.61  Score=36.92  Aligned_cols=118  Identities=15%  Similarity=0.224  Sum_probs=74.9

Q ss_pred             hhHHHHHHHHhHhCC-CCCcHHHHHHHHHHhccccchhhHHHHHHHHHHhCccc-chHHHHHHHHHHHhcCChhhhc---
Q 036068           53 FREALTLFQEMQTSN-IMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKN-DIFAGNALIDMYCICADVEKAQ---  127 (178)
Q Consensus        53 ~~~a~~~~~~m~~~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~-~~~~~~~ll~~~~~~~~~~~a~---  127 (178)
                      .+.....+++++..- +.|+ .+|...|+.-.+..-++.|..+|....+.+..+ ++.+.+++|..||... .+-|.   
T Consensus       347 ~~~~~~~~~~ll~~~~~~~t-Lv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cskD-~~~AfrIF  424 (656)
T KOG1914|consen  347 EKKVHEIYNKLLKIEDIDLT-LVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCSKD-KETAFRIF  424 (656)
T ss_pred             hhhhHHHHHHHHhhhccCCc-eehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhcCC-hhHHHHHH
Confidence            444555555554432 3333 567777888778777888888888888777666 6778888888777543 33343   


Q ss_pred             -------cchhhH-HHHHHHHHhcCChhHHHHHHHHHHHcCCCCCh--hHHHHHH
Q 036068          128 -------KDKFSW-TTMIVGLAISGNGDKALDMFSQMLRASIKPDE--VAYVGVL  172 (178)
Q Consensus       128 -------~~~~~~-~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~--~t~~~li  172 (178)
                             +|...| +..++-+...|+-..+..+|++.+..++.||.  ..|..+|
T Consensus       425 eLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l  479 (656)
T KOG1914|consen  425 ELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRML  479 (656)
T ss_pred             HHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHH
Confidence                   333333 55666666777777777777777777555543  3444433

>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus

Probab=95.65  E-value=0.22  Score=31.91  Aligned_cols=69  Identities=10%  Similarity=0.023  Sum_probs=51.5

Q ss_pred             ChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHHhccccchhhHHHHHHHHHHhCccc
Q 036068           36 DYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKN  105 (178)
Q Consensus        36 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~  105 (178)
                      +....+..+..+.+.|.-++-.++++++.+.+ .+++.....+..+|.+.|+..++.+++.+.-+.|.+-
T Consensus        85 ~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~-~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~kE  153 (161)
T PF09205_consen   85 LSEYVDLALDILVKQGKKDQLDKIYNELKKNE-EINPEFLVKIANAYKKLGNTREANELLKEACEKGLKE  153 (161)
T ss_dssp             --HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-HH
T ss_pred             hHHHHHHHHHHHHHhccHHHHHHHHHHHhhcc-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchHH
Confidence            55667888899999999999999999887643 6788888999999999999999999999998888753

Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=95.62  E-value=0.9  Score=36.68  Aligned_cols=100  Identities=12%  Similarity=0.128  Sum_probs=75.9

Q ss_pred             CcchhHH--HHHHHHHHhcCChhHHHHHhccCCCCChhHHHH---HHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHH
Q 036068            3 NKDVISW--TAIVSRYINRGQVDIARQCFDQMPERDYVLWTA---MIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVS   77 (178)
Q Consensus         3 ~p~~~~~--~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~---li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~   77 (178)
                      +|++..|  --++..+-+.|+++.|...++.....++..+..   =-+.+.-.|++++|..++++..+.. .||...-.-
T Consensus       366 ~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD-~aDR~INsK  444 (700)
T KOG1156|consen  366 PPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD-TADRAINSK  444 (700)
T ss_pred             CchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-chhHHHHHH
Confidence            4555554  446777888999999999999887754443333   3367778899999999999988776 457666557


Q ss_pred             HHHHhccccchhhHHHHHHHHHHhCc
Q 036068           78 ILTARANLRALDLGEWIKTYIDKNKV  103 (178)
Q Consensus        78 ll~~~~~~~~~~~a~~~~~~m~~~~~  103 (178)
                      ..+-..+.++.++|.++.....+.|.
T Consensus       445 cAKYmLrAn~i~eA~~~~skFTr~~~  470 (700)
T KOG1156|consen  445 CAKYMLRANEIEEAEEVLSKFTREGF  470 (700)
T ss_pred             HHHHHHHccccHHHHHHHHHhhhccc
Confidence            77777888999999999988888775

>PRK04841 transcriptional regulator MalT; Provisional

Probab=95.58  E-value=0.92  Score=38.54  Aligned_cols=93  Identities=11%  Similarity=-0.008  Sum_probs=58.5

Q ss_pred             HHHHHHHHHHhcCChhHHHHHhccCCC-------C----ChhHHHHHHHHHhhcCChhHHHHHHHHhHhC--CCCC--cH
Q 036068            8 SWTAIVSRYINRGQVDIARQCFDQMPE-------R----DYVLWTAMIDGYLRVNRFREALTLFQEMQTS--NIMG--DE   72 (178)
Q Consensus         8 ~~~~li~~~~~~~~~~~a~~~~~~m~~-------~----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~--~~~~--~~   72 (178)
                      ++..+...+...|+++.|...+++...       +    ....+..+-..+...|++++|...+++....  ...+  ..
T Consensus       533 ~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~  612 (903)
T PRK04841        533 SLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQL  612 (903)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHH
Confidence            445566677788888888887766432       1    1223334445566778999998888876442  1112  23


Q ss_pred             HHHHHHHHHhccccchhhHHHHHHHHHH
Q 036068           73 FTIVSILTARANLRALDLGEWIKTYIDK  100 (178)
Q Consensus        73 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~  100 (178)
                      ..+..+.......|++++|...+.....
T Consensus       613 ~~~~~la~~~~~~G~~~~A~~~l~~a~~  640 (903)
T PRK04841        613 QCLAMLAKISLARGDLDNARRYLNRLEN  640 (903)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            3444455567788888888888876644

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=95.56  E-value=0.46  Score=32.52  Aligned_cols=93  Identities=8%  Similarity=0.044  Sum_probs=45.1

Q ss_pred             CChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHHhccccchhhHHHHHHHHHHhCc-ccchHHHHHH
Q 036068           35 RDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKV-KNDIFAGNAL  113 (178)
Q Consensus        35 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~-~~~~~~~~~l  113 (178)
                      |++..--.|-.+..+.|+..+|...|++-..--..-|......+.++....+++..+...++.+.+... -.++.+.-.+
T Consensus        87 pTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~  166 (251)
T COG4700          87 PTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLF  166 (251)
T ss_pred             hhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHH
Confidence            344444445555555555666655555544332333445555555555555555555555555554331 0112222233


Q ss_pred             HHHHHhcCChhhhc
Q 036068          114 IDMYCICADVEKAQ  127 (178)
Q Consensus       114 l~~~~~~~~~~~a~  127 (178)
                      -..|...|...+|.
T Consensus       167 aR~laa~g~~a~Ae  180 (251)
T COG4700         167 ARTLAAQGKYADAE  180 (251)
T ss_pred             HHHHHhcCCchhHH
Confidence            44455555555443

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=95.55  E-value=0.26  Score=38.40  Aligned_cols=124  Identities=15%  Similarity=0.147  Sum_probs=71.0

Q ss_pred             HHHHHHHHHhcCChhHHHHHhccCCCCChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHHhccccch
Q 036068            9 WTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANLRAL   88 (178)
Q Consensus         9 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~   88 (178)
                      .+.++..+-+.|..+.|+++...-.        .-.+...+.|+.+.|.++-++      ..+...|..|-+...+.|++
T Consensus       298 ~~~i~~fL~~~G~~e~AL~~~~D~~--------~rFeLAl~lg~L~~A~~~a~~------~~~~~~W~~Lg~~AL~~g~~  363 (443)
T PF04053_consen  298 GQSIARFLEKKGYPELALQFVTDPD--------HRFELALQLGNLDIALEIAKE------LDDPEKWKQLGDEALRQGNI  363 (443)
T ss_dssp             HHHHHHHHHHTT-HHHHHHHSS-HH--------HHHHHHHHCT-HHHHHHHCCC------CSTHHHHHHHHHHHHHTTBH
T ss_pred             HHHHHHHHHHCCCHHHHHhhcCChH--------HHhHHHHhcCCHHHHHHHHHh------cCcHHHHHHHHHHHHHcCCH
Confidence            4455555555555555555544321        112223344555555443332      23667888888888888888


Q ss_pred             hhHHHHHHHHHHhCcccchHHHHHHHHHHHhcCChhhhc------cchhhHHHHHHHHHhcCChhHHHHHHHH
Q 036068           89 DLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ------KDKFSWTTMIVGLAISGNGDKALDMFSQ  155 (178)
Q Consensus        89 ~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~------~~~~~~~~li~~~~~~~~~~~a~~~~~~  155 (178)
                      +.|++.++...+         +..|+-.|.-.|+.+...      ...--+|..+.++...|+.++..+++.+
T Consensus       364 ~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~~~~n~af~~~~~lgd~~~cv~lL~~  427 (443)
T PF04053_consen  364 ELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEERGDINIAFQAALLLGDVEECVDLLIE  427 (443)
T ss_dssp             HHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-HHHHHHHHHHHT-HHHHHHHHHH
T ss_pred             HHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHccCHHHHHHHHHHcCCHHHHHHHHHH
Confidence            888888765432         555666666666665543      2233466777777778888888777654

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1

Probab=95.53  E-value=0.14  Score=31.02  Aligned_cols=76  Identities=13%  Similarity=0.070  Sum_probs=50.3

Q ss_pred             HHHHHHHHhhcCChh--HHHHHHHHhHhCCCCCcHHHHHHHHHHhccccchhhHHHHHHHHHHhCcccchHHHHHHHHH
Q 036068           40 WTAMIDGYLRVNRFR--EALTLFQEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDM  116 (178)
Q Consensus        40 ~~~li~~~~~~~~~~--~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~  116 (178)
                      |+.--..|....+.+  +..+-++.+....+.|+.....+.+++|.+.+++..|.++++.++..-- +....|..+++-
T Consensus        11 F~ary~~~F~~~~iD~we~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~-~~~~~Y~~~lqE   88 (108)
T PF02284_consen   11 FDARYEKYFNRPDIDGWELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCG-NKKEIYPYILQE   88 (108)
T ss_dssp             HHHHHHHHHH-TT--HHHHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTT-T-TTHHHHHHHH
T ss_pred             HHHHHHHHhCCccccHHHHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcc-ChHHHHHHHHHH
Confidence            333334444444433  5667778888899999999999999999999999999999998875432 223377777764

9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....

>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=95.53  E-value=0.019  Score=37.15  Aligned_cols=80  Identities=13%  Similarity=0.103  Sum_probs=58.3

Q ss_pred             HHHHHhccccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHhcCChhhhc-----cchhhHHHHHHHHHhcCChhHHHH
Q 036068           77 SILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ-----KDKFSWTTMIVGLAISGNGDKALD  151 (178)
Q Consensus        77 ~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~-----~~~~~~~~li~~~~~~~~~~~a~~  151 (178)
                      .+++.+.+.+.++....+++.+.+.+...+....+.++..|++.++.+...     .+..-...++..|.+.|.++++.-
T Consensus        12 ~vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~yd~~~~~~~c~~~~l~~~a~~   91 (143)
T PF00637_consen   12 EVISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNNYDLDKALRLCEKHGLYEEAVY   91 (143)
T ss_dssp             CCHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSSS-CTHHHHHHHTTTSHHHHHH
T ss_pred             HHHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccccCHHHHHHHHHhcchHHHHHH
Confidence            367788888999999999999998877778999999999999999877766     222334455666666666666666


Q ss_pred             HHHHH
Q 036068          152 MFSQM  156 (178)
Q Consensus       152 ~~~~m  156 (178)
                      +|.++
T Consensus        92 Ly~~~   96 (143)
T PF00637_consen   92 LYSKL   96 (143)
T ss_dssp             HHHCC
T ss_pred             HHHHc
Confidence            66554

These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=95.49  E-value=0.49  Score=32.38  Aligned_cols=121  Identities=11%  Similarity=0.015  Sum_probs=83.8

Q ss_pred             cchhHHHHHHHHHHhcCChhHHHHHhccCCC----CChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCC-CCcHHHHHHH
Q 036068            4 KDVISWTAIVSRYINRGQVDIARQCFDQMPE----RDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNI-MGDEFTIVSI   78 (178)
Q Consensus         4 p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~-~~~~~~~~~l   78 (178)
                      |++..--.|-.+..+.|+..+|...|++-..    .|....-.+-++....++...|...++++-+..- ..+..+-..+
T Consensus        87 pTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~  166 (251)
T COG4700          87 PTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLF  166 (251)
T ss_pred             hhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHH
Confidence            5666666788888888999999888887654    3777777777888888888888888888766531 1123355567


Q ss_pred             HHHhccccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHhcCChhhh
Q 036068           79 LTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKA  126 (178)
Q Consensus        79 l~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a  126 (178)
                      -+.+...|++.+|+.-|+.....-..|  ..-.-.-..+.+.|+.+++
T Consensus       167 aR~laa~g~~a~Aesafe~a~~~ypg~--~ar~~Y~e~La~qgr~~ea  212 (251)
T COG4700         167 ARTLAAQGKYADAESAFEVAISYYPGP--QARIYYAEMLAKQGRLREA  212 (251)
T ss_pred             HHHHHhcCCchhHHHHHHHHHHhCCCH--HHHHHHHHHHHHhcchhHH
Confidence            788888888888888888888764433  3333333334555555544

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=95.48  E-value=0.3  Score=37.74  Aligned_cols=88  Identities=9%  Similarity=-0.095  Sum_probs=67.2

Q ss_pred             ChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcH----HHHHHHHHHhccccchhhHHHHHHHHHHhC-c-------
Q 036068           36 DYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDE----FTIVSILTARANLRALDLGEWIKTYIDKNK-V-------  103 (178)
Q Consensus        36 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~----~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~-~-------  103 (178)
                      +...|+.+-.+|.+.|++++|+..|++-.+.+  |+.    .+|..+-.+|.+.|+.++|.+.++...+.+ .       
T Consensus        74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~--Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALelsn~~f~~i~~  151 (453)
T PLN03098         74 TAEDAVNLGLSLFSKGRVKDALAQFETALELN--PNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDYNLKFSTILN  151 (453)
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcchhHHHHHh
Confidence            66789999999999999999999999987764  563    468999999999999999999998887752 1       


Q ss_pred             ccch------HHHHHHHHHHHhcCChhh
Q 036068          104 KNDI------FAGNALIDMYCICADVEK  125 (178)
Q Consensus       104 ~~~~------~~~~~ll~~~~~~~~~~~  125 (178)
                      .|+.      .-+..++..+.+.|....
T Consensus       152 DpdL~plR~~pef~eLlee~rk~G~~~g  179 (453)
T PLN03098        152 DPDLAPFRASPEFKELQEEARKGGEDIG  179 (453)
T ss_pred             CcchhhhcccHHHHHHHHHHHHhCCccC
Confidence            1111      245566666666665443

>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]

Probab=95.44  E-value=0.31  Score=35.40  Aligned_cols=75  Identities=15%  Similarity=0.192  Sum_probs=58.2

Q ss_pred             hHHHHHHHHHHhcCChhHHHHHhccCCC--C-ChhHHHHHHHHHhhcCChhHHHHHHHHhHh-----CCCCCcHHHHHHH
Q 036068            7 ISWTAIVSRYINRGQVDIARQCFDQMPE--R-DYVLWTAMIDGYLRVNRFREALTLFQEMQT-----SNIMGDEFTIVSI   78 (178)
Q Consensus         7 ~~~~~li~~~~~~~~~~~a~~~~~~m~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~-----~~~~~~~~~~~~l   78 (178)
                      .++..++..+...|+++.+.+.++++..  | +...|..+|.+|.+.|+...|...|+++.+     .|+.|...+....
T Consensus       154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y  233 (280)
T COG3629         154 KALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALY  233 (280)
T ss_pred             HHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHH
Confidence            3566778888888888888888887753  3 777888888888888888888888888755     5778877776666


Q ss_pred             HHH
Q 036068           79 LTA   81 (178)
Q Consensus        79 l~~   81 (178)
                      ...
T Consensus       234 ~~~  236 (280)
T COG3629         234 EEI  236 (280)
T ss_pred             HHH
Confidence            555

>KOG2047 consensus mRNA splicing factor [RNA processing and modification]

Probab=95.39  E-value=0.61  Score=37.74  Aligned_cols=137  Identities=12%  Similarity=0.000  Sum_probs=94.3

Q ss_pred             hHHHHHHHHHHhcCChhHHHHHhccCCCCChhHHHHHHHHHhhcCChhHHHHHHHHhHhC------CCCCcHHHHHHHHH
Q 036068            7 ISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTS------NIMGDEFTIVSILT   80 (178)
Q Consensus         7 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~------~~~~~~~~~~~ll~   80 (178)
                      ..|...+...-+.|-.+-+..+++.-.+-++..-+.-|..+++.+++++|-+.+......      ..+.+...|.-+-+
T Consensus       139 rIW~lyl~Fv~~~~lPets~rvyrRYLk~~P~~~eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcd  218 (835)
T KOG2047|consen  139 RIWDLYLKFVESHGLPETSIRVYRRYLKVAPEAREEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCD  218 (835)
T ss_pred             cchHHHHHHHHhCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHH
Confidence            357777777777888888888888877767777888888899999999998888776542      23455666666666


Q ss_pred             Hhccccch---hhHHHHHHHHHHhCcccchHHHHHHHHHHHhcCChhhhc----------cchhhHHHHHHHHHhc
Q 036068           81 ARANLRAL---DLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ----------KDKFSWTTMIVGLAIS  143 (178)
Q Consensus        81 ~~~~~~~~---~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~----------~~~~~~~~li~~~~~~  143 (178)
                      ..++.-+.   -....++..+..+-...-...|++|.+.|.+.|++++|.          -++.-|..+.+.|+..
T Consensus       219 lis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v~tvrDFt~ifd~Ya~F  294 (835)
T KOG2047|consen  219 LISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQTVMTVRDFTQIFDAYAQF  294 (835)
T ss_pred             HHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhheehhhHHHHHHHHHHH
Confidence            55554432   234445555544433444677899999999999998886          3455566666666543

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=95.36  E-value=0.25  Score=32.02  Aligned_cols=118  Identities=11%  Similarity=0.053  Sum_probs=75.8

Q ss_pred             HHHHHHHHHhhcCChhHHHHHHHHhHhCC--CCCcHHHHHHHHHHhccccchhhHHHHHHHHHHhCcccchHHHHHHHHH
Q 036068           39 LWTAMIDGYLRVNRFREALTLFQEMQTSN--IMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDM  116 (178)
Q Consensus        39 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~--~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~  116 (178)
                      .|+.-... .+.|++++|.+.|+.+..+-  -+-....-..++.++.+.+++++|...+++.++..+..--.-|-..+.+
T Consensus        13 ly~~a~~~-l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~g   91 (142)
T PF13512_consen   13 LYQEAQEA-LQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRG   91 (142)
T ss_pred             HHHHHHHH-HHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHH
Confidence            34443333 56789999999999998762  1223466778899999999999999999999998865444556666666


Q ss_pred             HHhcCChhhhccchhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCh
Q 036068          117 YCICADVEKAQKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDE  165 (178)
Q Consensus       117 ~~~~~~~~~a~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~  165 (178)
                      ++.-...+..      +..+...=...+....|+.-|+++++.  -|++
T Consensus        92 L~~~~~~~~~------~~~~~~~drD~~~~~~A~~~f~~lv~~--yP~S  132 (142)
T PF13512_consen   92 LSYYEQDEGS------LQSFFRSDRDPTPARQAFRDFEQLVRR--YPNS  132 (142)
T ss_pred             HHHHHHhhhH------HhhhcccccCcHHHHHHHHHHHHHHHH--CcCC
Confidence            5544433311      111111111233456777777777764  4554

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=95.29  E-value=0.88  Score=35.80  Aligned_cols=156  Identities=15%  Similarity=0.120  Sum_probs=98.8

Q ss_pred             HHHHHHHHHhcCChhHHHHHhccCCCC---ChhHHHH-------HHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHH
Q 036068            9 WTAIVSRYINRGQVDIARQCFDQMPER---DYVLWTA-------MIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSI   78 (178)
Q Consensus         9 ~~~li~~~~~~~~~~~a~~~~~~m~~~---~~~~~~~-------li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l   78 (178)
                      ++..-.++...|.+.+...+-+.-.+.   ...-|+.       +-.+|.+.++++.|...|++-+.....|+..+=...
T Consensus       260 ~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~ls~lk~  339 (539)
T KOG0548|consen  260 LNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNAYTKREDYEGAIKYYQKALTEHRTPDLLSKLKE  339 (539)
T ss_pred             HHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcCHHHHHHHHH
Confidence            444555566666665555444443321   1112222       233666677888888888887665544443321111


Q ss_pred             -------------------------HHHhccccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHhcCChhhhccchhhH
Q 036068           79 -------------------------LTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQKDKFSW  133 (178)
Q Consensus        79 -------------------------l~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~  133 (178)
                                               -+.+.+.|++..|...|.+++++. +-|...|...-.+|.+.|.+..|..|-...
T Consensus       340 ~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~-P~Da~lYsNRAac~~kL~~~~~aL~Da~~~  418 (539)
T KOG0548|consen  340 AEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRD-PEDARLYSNRAACYLKLGEYPEALKDAKKC  418 (539)
T ss_pred             HHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC-CchhHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence                                     235677899999999999999988 457889999999999999999998432222


Q ss_pred             H----HHHHHHHhc-------CChhHHHHHHHHHHHcCCCCChhH
Q 036068          134 T----TMIVGLAIS-------GNGDKALDMFSQMLRASIKPDEVA  167 (178)
Q Consensus       134 ~----~li~~~~~~-------~~~~~a~~~~~~m~~~g~~p~~~t  167 (178)
                      .    ..+.+|.+.       .++++|.+.|.+-++.  .|+..-
T Consensus       419 ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~--dp~~~e  461 (539)
T KOG0548|consen  419 IELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALEL--DPSNAE  461 (539)
T ss_pred             HhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--CchhHH
Confidence            1    334455544       5778888888877664  355433

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.05  E-value=0.82  Score=33.68  Aligned_cols=90  Identities=14%  Similarity=0.041  Sum_probs=69.2

Q ss_pred             HHHHHHHHHhcCChhHHHHHhccCCCC---ChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHH-HHHHhcc
Q 036068            9 WTAIVSRYINRGQVDIARQCFDQMPER---DYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVS-ILTARAN   84 (178)
Q Consensus         9 ~~~li~~~~~~~~~~~a~~~~~~m~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~-ll~~~~~   84 (178)
                      +++.+..+.+..++++|++++..-.++   +......|-..|-...++..|-.++.++...  .|...-|.. -.+.+-+
T Consensus        13 ftaviy~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSLY~   90 (459)
T KOG4340|consen   13 FTAVVYRLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSLYK   90 (459)
T ss_pred             hHHHHHHHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHHHH
Confidence            567777888999999999998866543   6667778888888999999999999998765  466665542 3455667


Q ss_pred             ccchhhHHHHHHHHHH
Q 036068           85 LRALDLGEWIKTYIDK  100 (178)
Q Consensus        85 ~~~~~~a~~~~~~m~~  100 (178)
                      .+.+.+|..+...|.+
T Consensus        91 A~i~ADALrV~~~~~D  106 (459)
T KOG4340|consen   91 ACIYADALRVAFLLLD  106 (459)
T ss_pred             hcccHHHHHHHHHhcC
Confidence            7888888888877654

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=95.02  E-value=0.26  Score=33.32  Aligned_cols=55  Identities=7%  Similarity=0.166  Sum_probs=27.7

Q ss_pred             HHHHHHHHHhcCChhHHHHHhccCCCC------ChhHHHHHHHHHhhcCChhHHHHHHHHh
Q 036068            9 WTAIVSRYINRGQVDIARQCFDQMPER------DYVLWTAMIDGYLRVNRFREALTLFQEM   63 (178)
Q Consensus         9 ~~~li~~~~~~~~~~~a~~~~~~m~~~------~~~~~~~li~~~~~~~~~~~a~~~~~~m   63 (178)
                      +..+.+.|++.|+++.|.+.|.++++.      -+..+-.+|+.....+++..+.....+.
T Consensus        39 ~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka   99 (177)
T PF10602_consen   39 LEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKA   99 (177)
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence            444555555555555555555555542      2223344455555555555555554443

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=94.87  E-value=1.7  Score=35.20  Aligned_cols=163  Identities=13%  Similarity=0.156  Sum_probs=93.5

Q ss_pred             HHHHHHHHHhcCChhHHHHHhccCC---CCChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHHhccc
Q 036068            9 WTAIVSRYINRGQVDIARQCFDQMP---ERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANL   85 (178)
Q Consensus         9 ~~~li~~~~~~~~~~~a~~~~~~m~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~   85 (178)
                      |+.+--.+-...++++|+..|....   +-|...|.-|--.=++.|+++.......++.+.. ......|..+..+..-.
T Consensus        78 wHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~-~~~ra~w~~~Avs~~L~  156 (700)
T KOG1156|consen   78 WHVLGLLQRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLR-PSQRASWIGFAVAQHLL  156 (700)
T ss_pred             HHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh-hhhHHHHHHHHHHHHHH
Confidence            4433333333444555555444322   1233333333333333444444444444443331 11234566666677777


Q ss_pred             cchhhHHHHHHHHHHhC-cccchHHHHHHHH------HHHhcCChhhhc----------cchhhH-HHHHHHHHhcCChh
Q 036068           86 RALDLGEWIKTYIDKNK-VKNDIFAGNALID------MYCICADVEKAQ----------KDKFSW-TTMIVGLAISGNGD  147 (178)
Q Consensus        86 ~~~~~a~~~~~~m~~~~-~~~~~~~~~~ll~------~~~~~~~~~~a~----------~~~~~~-~~li~~~~~~~~~~  147 (178)
                      |+...|..+++...+.. -.|+...+.....      ...+.|..+.|.          .|-..+ .+-..-+.+.++.+
T Consensus       157 g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~lE  236 (700)
T KOG1156|consen  157 GEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVDKLAFEETKADLLMKLGQLE  236 (700)
T ss_pred             HHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhhHH
Confidence            88999999999888766 3566666654433      344567777776          233333 34446677899999


Q ss_pred             HHHHHHHHHHHcCCCCChhHHHHHHhh
Q 036068          148 KALDMFSQMLRASIKPDEVAYVGVLSA  174 (178)
Q Consensus       148 ~a~~~~~~m~~~g~~p~~~t~~~li~a  174 (178)
                      +|..+|..++..  .||..-|.-.+..
T Consensus       237 eA~~~y~~Ll~r--nPdn~~Yy~~l~~  261 (700)
T KOG1156|consen  237 EAVKVYRRLLER--NPDNLDYYEGLEK  261 (700)
T ss_pred             hHHHHHHHHHhh--CchhHHHHHHHHH
Confidence            999999999987  5887766655443

>KOG2610 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.69  E-value=0.66  Score=34.70  Aligned_cols=138  Identities=11%  Similarity=0.055  Sum_probs=90.9

Q ss_pred             cCChhHHHHHhccCCC--C-ChhHHHHHHHHHhhcCChhHHHHHHHHhHhC---CCCCcHHHHHHHHHHhccccchhhHH
Q 036068           19 RGQVDIARQCFDQMPE--R-DYVLWTAMIDGYLRVNRFREALTLFQEMQTS---NIMGDEFTIVSILTARANLRALDLGE   92 (178)
Q Consensus        19 ~~~~~~a~~~~~~m~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~---~~~~~~~~~~~ll~~~~~~~~~~~a~   92 (178)
                      .|+..+|-..++++.+  | |...++.--.++..+|+.+.-...++++.-.   +++-....-..+..++...|-+++|+
T Consensus       116 ~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~dAE  195 (491)
T KOG2610|consen  116 RGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYDDAE  195 (491)
T ss_pred             cccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccchhHH
Confidence            4555566666666554  2 7777888888888888888888888887544   33222333445566778889999999


Q ss_pred             HHHHHHHHhCcccchHHHHHHHHHHHhcCChhhhc----cc-----------hhhHHHHHHHHHhcCChhHHHHHHHHHH
Q 036068           93 WIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ----KD-----------KFSWTTMIVGLAISGNGDKALDMFSQML  157 (178)
Q Consensus        93 ~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~----~~-----------~~~~~~li~~~~~~~~~~~a~~~~~~m~  157 (178)
                      +.-++..+.+ +.|.....+....+-..|++.++.    ..           ..-|=...-.+...+.++.|+++|++=.
T Consensus       196 k~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD~ei  274 (491)
T KOG2610|consen  196 KQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYDREI  274 (491)
T ss_pred             HHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHHHHH
Confidence            8887777665 346666777777777778777776    11           1112222333445589999999997543

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=94.69  E-value=0.18  Score=25.35  Aligned_cols=35  Identities=20%  Similarity=0.381  Sum_probs=29.2

Q ss_pred             hhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhH
Q 036068          131 FSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVA  167 (178)
Q Consensus       131 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t  167 (178)
                      .+|..+...|.+.|++++|.++|++.++.  .|+...
T Consensus         2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~--~P~~~~   36 (44)
T PF13428_consen    2 AAWLALARAYRRLGQPDEAERLLRRALAL--DPDDPE   36 (44)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCCHH
Confidence            35778889999999999999999999985  576543

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=94.68  E-value=0.56  Score=31.72  Aligned_cols=65  Identities=9%  Similarity=0.054  Sum_probs=52.7

Q ss_pred             hhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCc--HHHHHHHHHHhccccchhhHHHHHHHHHHh
Q 036068           37 YVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGD--EFTIVSILTARANLRALDLGEWIKTYIDKN  101 (178)
Q Consensus        37 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~--~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~  101 (178)
                      ...+..+...|.+.|+.+.|.+.|.++......+.  ...+..+|+.....+++..+...+......
T Consensus        36 r~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~  102 (177)
T PF10602_consen   36 RMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESL  102 (177)
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence            34678899999999999999999999988755444  456778888999999999988888766543

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=94.65  E-value=0.94  Score=31.24  Aligned_cols=113  Identities=10%  Similarity=-0.025  Sum_probs=67.6

Q ss_pred             HHHHhhcCChhHHHHHHHHhHhCC--CCCcHHHHHHHHHHhccccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHhcC
Q 036068           44 IDGYLRVNRFREALTLFQEMQTSN--IMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICA  121 (178)
Q Consensus        44 i~~~~~~~~~~~a~~~~~~m~~~~--~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~  121 (178)
                      -..+...|++++|.+.|+++...-  -+--......+..++-+.|+++.|...++.+++..+.....-+-..+.+.+...
T Consensus        12 a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~~~   91 (203)
T PF13525_consen   12 ALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLSYYK   91 (203)
T ss_dssp             HHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHH
Confidence            345567899999999999998752  122234556788899999999999999999998765443333444444443322


Q ss_pred             Chhhh----------ccchhhHHHHHHHHHhcCChhHHHHHHHHH
Q 036068          122 DVEKA----------QKDKFSWTTMIVGLAISGNGDKALDMFSQM  156 (178)
Q Consensus       122 ~~~~a----------~~~~~~~~~li~~~~~~~~~~~a~~~~~~m  156 (178)
                      .....          ..-...+..++.-|=......+|...+.++
T Consensus        92 ~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l  136 (203)
T PF13525_consen   92 QIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAEL  136 (203)
T ss_dssp             HHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHH
T ss_pred             hCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHH
Confidence            22222          123445556666666666666665544444

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=94.56  E-value=0.11  Score=24.98  Aligned_cols=23  Identities=9%  Similarity=0.277  Sum_probs=13.3

Q ss_pred             HHHHHHHHhhcCChhHHHHHHHH
Q 036068           40 WTAMIDGYLRVNRFREALTLFQE   62 (178)
Q Consensus        40 ~~~li~~~~~~~~~~~a~~~~~~   62 (178)
                      |+.|-..|.+.|++++|.++|++
T Consensus         2 l~~Lg~~~~~~g~~~~Ai~~y~~   24 (36)
T PF13176_consen    2 LNNLGRIYRQQGDYEKAIEYYEQ   24 (36)
T ss_dssp             HHHHHHHHHHCT-HHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHH
Confidence            44555566666666666666665

>smart00299 CLH Clathrin heavy chain repeat homology

Probab=94.52  E-value=0.56  Score=30.10  Aligned_cols=126  Identities=16%  Similarity=0.140  Sum_probs=79.5

Q ss_pred             hhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHHhccccchhhHHHHHHHHHHhCcccchHHHHHHHHH
Q 036068           37 YVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDM  116 (178)
Q Consensus        37 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~  116 (178)
                      ......++..+.+.+..+....+++.+...+. .+....+.++..|++.+. ++..+.+   ..   ..+......++..
T Consensus         7 ~~~~~~vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~~~~-~~ll~~l---~~---~~~~yd~~~~~~~   78 (140)
T smart00299        7 PIDVSEVVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAKYDP-QKEIERL---DN---KSNHYDIEKVGKL   78 (140)
T ss_pred             cCCHHHHHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHHHCH-HHHHHHH---Hh---ccccCCHHHHHHH
Confidence            33456788889888999999999999988873 677889999999987643 2333333   32   1233334456777


Q ss_pred             HHhcCChhhhc---cchhhHHHHHHHHHhc-CChhHHHHHHHHHHHcCCCCChhHHHHHHhhhh
Q 036068          117 YCICADVEKAQ---KDKFSWTTMIVGLAIS-GNGDKALDMFSQMLRASIKPDEVAYVGVLSACT  176 (178)
Q Consensus       117 ~~~~~~~~~a~---~~~~~~~~li~~~~~~-~~~~~a~~~~~~m~~~g~~p~~~t~~~li~a~~  176 (178)
                      +.+.+.++.+.   ....-|...+..+... ++++.|.+++.+      .-+...|..++..|.
T Consensus        79 c~~~~l~~~~~~l~~k~~~~~~Al~~~l~~~~d~~~a~~~~~~------~~~~~lw~~~~~~~l  136 (140)
T smart00299       79 CEKAKLYEEAVELYKKDGNFKDAIVTLIEHLGNYEKAIEYFVK------QNNPELWAEVLKALL  136 (140)
T ss_pred             HHHcCcHHHHHHHHHhhcCHHHHHHHHHHcccCHHHHHHHHHh------CCCHHHHHHHHHHHH
Confidence            77777666554   1122233344444444 666666666665      235667777776654

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=94.51  E-value=1  Score=37.73  Aligned_cols=48  Identities=21%  Similarity=0.270  Sum_probs=35.3

Q ss_pred             HHHHHHHHHhcCChhhhc------cchhhHHHHHHHHHhcCChhHHHHHHHHHH
Q 036068          110 GNALIDMYCICADVEKAQ------KDKFSWTTMIVGLAISGNGDKALDMFSQML  157 (178)
Q Consensus       110 ~~~ll~~~~~~~~~~~a~------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~  157 (178)
                      |-.++...|-.|+.++|.      .|....-.|.+.|-+.|++.+|...|-+.+
T Consensus       941 ~fs~VrI~C~qGk~~kAa~iA~esgd~AAcYhlaR~YEn~g~v~~Av~FfTrAq  994 (1416)
T KOG3617|consen  941 YFSMVRIKCIQGKTDKAARIAEESGDKAACYHLARMYENDGDVVKAVKFFTRAQ  994 (1416)
T ss_pred             hhhheeeEeeccCchHHHHHHHhcccHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence            334555556666666665      477777888899999999999998887754

>PF13762 MNE1: Mitochondrial splicing apparatus component

Probab=94.49  E-value=0.79  Score=29.86  Aligned_cols=77  Identities=10%  Similarity=0.070  Sum_probs=39.7

Q ss_pred             HHHHHHHHHhcCChhHHHHHhccCCC---------CChhHHHHHHHHHhhcCC-hhHHHHHHHHhHhCCCCCcHHHHHHH
Q 036068            9 WTAIVSRYINRGQVDIARQCFDQMPE---------RDYVLWTAMIDGYLRVNR-FREALTLFQEMQTSNIMGDEFTIVSI   78 (178)
Q Consensus         9 ~~~li~~~~~~~~~~~a~~~~~~m~~---------~~~~~~~~li~~~~~~~~-~~~a~~~~~~m~~~~~~~~~~~~~~l   78 (178)
                      .|.++.-....+++....++++.+..         .+...|++++.+.++... .--+..+|+.|++.+.+++..-|..+
T Consensus        42 iN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~l  121 (145)
T PF13762_consen   42 INCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCL  121 (145)
T ss_pred             HHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence            34444444555555555555555431         244455555555544443 23345555555555555555555555


Q ss_pred             HHHhccc
Q 036068           79 LTARANL   85 (178)
Q Consensus        79 l~~~~~~   85 (178)
                      |+++.+.
T Consensus       122 i~~~l~g  128 (145)
T PF13762_consen  122 IKAALRG  128 (145)
T ss_pred             HHHHHcC
Confidence            5555544

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=94.45  E-value=1.2  Score=31.72  Aligned_cols=140  Identities=12%  Similarity=0.014  Sum_probs=84.7

Q ss_pred             ChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcH--HHHHHHHHHhccccchhhHHHHHHHHHHhCcccchHHHHHH
Q 036068           36 DYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDE--FTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNAL  113 (178)
Q Consensus        36 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~--~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l  113 (178)
                      +...+-.....+.+.|++++|.+.|+++...--.+..  ...-.+..++.+.+++++|...++...+..+...-.-+...
T Consensus        31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y  110 (243)
T PRK10866         31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLY  110 (243)
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHH
Confidence            4444334455556789999999999999886422211  11235667889999999999999999987654444444444


Q ss_pred             HHHHHh--cC---------------Chh---hhc----------cch----------------hhH--HHHHHHHHhcCC
Q 036068          114 IDMYCI--CA---------------DVE---KAQ----------KDK----------------FSW--TTMIVGLAISGN  145 (178)
Q Consensus       114 l~~~~~--~~---------------~~~---~a~----------~~~----------------~~~--~~li~~~~~~~~  145 (178)
                      +.+.+.  .+               +..   +|.          |+.                ..-  -.+..-|.+.|.
T Consensus       111 ~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~la~~e~~ia~~Y~~~~~  190 (243)
T PRK10866        111 MRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYELSVAEYYTKRGA  190 (243)
T ss_pred             HHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCc
Confidence            544431  11               111   111          110                000  123345778888


Q ss_pred             hhHHHHHHHHHHHc--CCCCChhHHHHHHhhh
Q 036068          146 GDKALDMFSQMLRA--SIKPDEVAYVGVLSAC  175 (178)
Q Consensus       146 ~~~a~~~~~~m~~~--g~~p~~~t~~~li~a~  175 (178)
                      +..|..-++.+.+.  +-+........++.+|
T Consensus       191 y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay  222 (243)
T PRK10866        191 YVAVVNRVEQMLRDYPDTQATRDALPLMENAY  222 (243)
T ss_pred             hHHHHHHHHHHHHHCCCCchHHHHHHHHHHHH
Confidence            88888888888874  3334445555555555

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=94.44  E-value=2.1  Score=34.35  Aligned_cols=155  Identities=13%  Similarity=0.178  Sum_probs=100.5

Q ss_pred             CChhHHHHHhccCCCC-ChhHHHHHHHHHhhcC--ChhHHHHHHHHhHhCCCCCcHHHHHHHHHHhccccchhhHHHHHH
Q 036068           20 GQVDIARQCFDQMPER-DYVLWTAMIDGYLRVN--RFREALTLFQEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKT   96 (178)
Q Consensus        20 ~~~~~a~~~~~~m~~~-~~~~~~~li~~~~~~~--~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~   96 (178)
                      +.-+.+.++-...+.. -...+.+++...-+..  ...++..++...-...-.-......+.++.....|+++.|.+++.
T Consensus       321 nk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~  400 (652)
T KOG2376|consen  321 NKMDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILS  400 (652)
T ss_pred             hhHHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence            3444555555555542 2444555555443322  356677777766554322234566677788889999999999998


Q ss_pred             --------HHHHhCcccchHHHHHHHHHHHhcCChhhhc--------------cchhhHHHHH----HHHHhcCChhHHH
Q 036068           97 --------YIDKNKVKNDIFAGNALIDMYCICADVEKAQ--------------KDKFSWTTMI----VGLAISGNGDKAL  150 (178)
Q Consensus        97 --------~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~--------------~~~~~~~~li----~~~~~~~~~~~a~  150 (178)
                              .+.+.+..  +.+...++..|.+.++-+.|.              +.....+.++    .--.+.|+.++|.
T Consensus       401 ~~~~~~~ss~~~~~~~--P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~  478 (652)
T KOG2376|consen  401 LFLESWKSSILEAKHL--PGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEAS  478 (652)
T ss_pred             HHhhhhhhhhhhhccC--hhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHH
Confidence                    55555544  456677777777776666554              2223333333    3334679999999


Q ss_pred             HHHHHHHHcCCCCChhHHHHHHhhhhc
Q 036068          151 DMFSQMLRASIKPDEVAYVGVLSACTH  177 (178)
Q Consensus       151 ~~~~~m~~~g~~p~~~t~~~li~a~~~  177 (178)
                      .+++++.+.+ ++|..+...++.+|++
T Consensus       479 s~leel~k~n-~~d~~~l~~lV~a~~~  504 (652)
T KOG2376|consen  479 SLLEELVKFN-PNDTDLLVQLVTAYAR  504 (652)
T ss_pred             HHHHHHHHhC-CchHHHHHHHHHHHHh
Confidence            9999999842 6889999999998874

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=94.40  E-value=0.19  Score=25.25  Aligned_cols=27  Identities=15%  Similarity=-0.020  Sum_probs=12.8

Q ss_pred             HHHHHHHhccccchhhHHHHHHHHHHh
Q 036068           75 IVSILTARANLRALDLGEWIKTYIDKN  101 (178)
Q Consensus        75 ~~~ll~~~~~~~~~~~a~~~~~~m~~~  101 (178)
                      +..+-.++.+.|++++|.++++...+.
T Consensus         4 ~~~la~~~~~~G~~~~A~~~~~~~l~~   30 (44)
T PF13428_consen    4 WLALARAYRRLGQPDEAERLLRRALAL   30 (44)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            334444444445555555555444444

>smart00299 CLH Clathrin heavy chain repeat homology

Probab=94.38  E-value=0.81  Score=29.34  Aligned_cols=84  Identities=8%  Similarity=0.128  Sum_probs=60.7

Q ss_pred             HHHHHHHHHHhcCChhHHHHHhccCCC---CChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHHhcc
Q 036068            8 SWTAIVSRYINRGQVDIARQCFDQMPE---RDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARAN   84 (178)
Q Consensus         8 ~~~~li~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~   84 (178)
                      .-..++..+.+.+.......+++.+.+   .+....+.++..|++.+. ++..+.++.   .   ++......+++.|.+
T Consensus         9 ~~~~vv~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~li~ly~~~~~-~~ll~~l~~---~---~~~yd~~~~~~~c~~   81 (140)
T smart00299        9 DVSEVVELFEKRNLLEELIPYLESALKLNSENPALQTKLIELYAKYDP-QKEIERLDN---K---SNHYDIEKVGKLCEK   81 (140)
T ss_pred             CHHHHHHHHHhCCcHHHHHHHHHHHHccCccchhHHHHHHHHHHHHCH-HHHHHHHHh---c---cccCCHHHHHHHHHH
Confidence            346788999889999999999998754   367789999999998753 555555552   1   233444557888888


Q ss_pred             ccchhhHHHHHHHH
Q 036068           85 LRALDLGEWIKTYI   98 (178)
Q Consensus        85 ~~~~~~a~~~~~~m   98 (178)
                      .+-++++..++..+
T Consensus        82 ~~l~~~~~~l~~k~   95 (140)
T smart00299       82 AKLYEEAVELYKKD   95 (140)
T ss_pred             cCcHHHHHHHHHhh
Confidence            88888877777655

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=94.09  E-value=0.73  Score=33.12  Aligned_cols=97  Identities=10%  Similarity=0.051  Sum_probs=72.8

Q ss_pred             HHHHHHHHHHhcCChhHHHHHhccCCC--C----ChhHHHHHHHHHhhcCChhHHHHHHHHhHhCC-CCCcH-HHHHHHH
Q 036068            8 SWTAIVSRYINRGQVDIARQCFDQMPE--R----DYVLWTAMIDGYLRVNRFREALTLFQEMQTSN-IMGDE-FTIVSIL   79 (178)
Q Consensus         8 ~~~~li~~~~~~~~~~~a~~~~~~m~~--~----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~-~~~~~-~~~~~ll   79 (178)
                      .|+.-+.. .+.|++..|..-|....+  |    ....+==|-.++...|++++|...|..+.+.- -.|.. ..+..|-
T Consensus       144 ~Y~~A~~~-~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg  222 (262)
T COG1729         144 LYNAALDL-YKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG  222 (262)
T ss_pred             HHHHHHHH-HHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence            57766654 467889999999988764  1    22333347889999999999999999987642 22222 5777888


Q ss_pred             HHhccccchhhHHHHHHHHHHhCccc
Q 036068           80 TARANLRALDLGEWIKTYIDKNKVKN  105 (178)
Q Consensus        80 ~~~~~~~~~~~a~~~~~~m~~~~~~~  105 (178)
                      .+..+.|+.++|...|+++.+.-+..
T Consensus       223 ~~~~~l~~~d~A~atl~qv~k~YP~t  248 (262)
T COG1729         223 VSLGRLGNTDEACATLQQVIKRYPGT  248 (262)
T ss_pred             HHHHHhcCHHHHHHHHHHHHHHCCCC
Confidence            88899999999999999999876543

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=94.04  E-value=2.8  Score=34.68  Aligned_cols=117  Identities=13%  Similarity=0.018  Sum_probs=89.5

Q ss_pred             HHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHHhccccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHh
Q 036068           40 WTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCI  119 (178)
Q Consensus        40 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~  119 (178)
                      |...-..+.+.+..++|..++.+..... .-....|...-..+...|..++|.+.|.......+. ++...+++-..+.+
T Consensus       653 wllaa~~~~~~~~~~~a~~CL~Ea~~~~-~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~-hv~s~~Ala~~lle  730 (799)
T KOG4162|consen  653 WLLAADLFLLSGNDDEARSCLLEASKID-PLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPD-HVPSMTALAELLLE  730 (799)
T ss_pred             HHHHHHHHHhcCCchHHHHHHHHHHhcc-hhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCC-CcHHHHHHHHHHHH
Confidence            4455667778888888888888876553 345566666666777888899999988877765533 46677888888888


Q ss_pred             cCChhhhc-------------cchhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 036068          120 CADVEKAQ-------------KDKFSWTTMIVGLAISGNGDKALDMFSQMLR  158 (178)
Q Consensus       120 ~~~~~~a~-------------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~  158 (178)
                      .|+..-+.             .+...|-.+-..+-+.|+.+.|.+.|.-..+
T Consensus       731 ~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~q  782 (799)
T KOG4162|consen  731 LGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQ  782 (799)
T ss_pred             hCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHh
Confidence            88766555             4788999999999999999999999987654

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=94.02  E-value=3  Score=34.52  Aligned_cols=97  Identities=13%  Similarity=0.117  Sum_probs=68.6

Q ss_pred             cchhHHHHHHHHHHhcCChhHHHHHhccCCC---CChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCC-cHHHHHHHH
Q 036068            4 KDVISWTAIVSRYINRGQVDIARQCFDQMPE---RDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMG-DEFTIVSIL   79 (178)
Q Consensus         4 p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~-~~~~~~~ll   79 (178)
                      .|...|..+.-+..+.|++..+-+.|++...   .-...|+.+--.|...|....|..+++.-....-.| +...+-..-
T Consensus       321 nd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lmas  400 (799)
T KOG4162|consen  321 NDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLMAS  400 (799)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHHHH
Confidence            5778899999999999999999999998654   356678888888899999888988887754332123 334444444


Q ss_pred             HHhc-cccchhhHHHHHHHHHH
Q 036068           80 TARA-NLRALDLGEWIKTYIDK  100 (178)
Q Consensus        80 ~~~~-~~~~~~~a~~~~~~m~~  100 (178)
                      +.|. +.+..+++..+-....+
T Consensus       401 klc~e~l~~~eegldYA~kai~  422 (799)
T KOG4162|consen  401 KLCIERLKLVEEGLDYAQKAIS  422 (799)
T ss_pred             HHHHhchhhhhhHHHHHHHHHH
Confidence            4443 45666666666655554

>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]

Probab=94.02  E-value=2.3  Score=33.23  Aligned_cols=111  Identities=11%  Similarity=0.147  Sum_probs=54.3

Q ss_pred             HHHHHHHHHHhcCChhHHHHHhccCCC-----CChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHH-HHHHHHH
Q 036068            8 SWTAIVSRYINRGQVDIARQCFDQMPE-----RDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFT-IVSILTA   81 (178)
Q Consensus         8 ~~~~li~~~~~~~~~~~a~~~~~~m~~-----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~-~~~ll~~   81 (178)
                      +|...+....+..-+..|..+|-+.++     +++..++..|..++. |+..-|..+|+.=...  -||... -...+..
T Consensus       399 v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~-~d~~ta~~ifelGl~~--f~d~~~y~~kyl~f  475 (660)
T COG5107         399 VFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYAT-GDRATAYNIFELGLLK--FPDSTLYKEKYLLF  475 (660)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHhc-CCcchHHHHHHHHHHh--CCCchHHHHHHHHH
Confidence            455555555555556666666655543     355556666655543 3445555555553222  123222 2334444


Q ss_pred             hccccchhhHHHHHH----HHHHhCcccchHHHHHHHHHHHhcCChh
Q 036068           82 RANLRALDLGEWIKT----YIDKNKVKNDIFAGNALIDMYCICADVE  124 (178)
Q Consensus        82 ~~~~~~~~~a~~~~~----~m~~~~~~~~~~~~~~ll~~~~~~~~~~  124 (178)
                      +.+.++-+.|..+|+    ++.+...   -..|..+|+.-.+.|++.
T Consensus       476 Li~inde~naraLFetsv~r~~~~q~---k~iy~kmi~YEs~~G~lN  519 (660)
T COG5107         476 LIRINDEENARALFETSVERLEKTQL---KRIYDKMIEYESMVGSLN  519 (660)
T ss_pred             HHHhCcHHHHHHHHHHhHHHHHHhhh---hHHHHHHHHHHHhhcchH
Confidence            555555555555555    2222211   224555555555555544

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=94.01  E-value=0.8  Score=37.59  Aligned_cols=102  Identities=16%  Similarity=0.146  Sum_probs=67.1

Q ss_pred             HHHHHHHHhcCChhHHHHHhccCCCCChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHHhccccchh
Q 036068           10 TAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANLRALD   89 (178)
Q Consensus        10 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~   89 (178)
                      +--+.-+..-|+-.+|.++-.+.+-||-..|-.=+.+++..++|++-+++-+.++      ++.-|..+..+|.+.|+.+
T Consensus       688 ~dTv~~li~~g~~k~a~ql~~~FkipdKr~~wLk~~aLa~~~kweeLekfAkskk------sPIGy~PFVe~c~~~~n~~  761 (829)
T KOG2280|consen  688 HDTVTTLILIGQNKRAEQLKSDFKIPDKRLWWLKLTALADIKKWEELEKFAKSKK------SPIGYLPFVEACLKQGNKD  761 (829)
T ss_pred             HHHHHHHHHccchHHHHHHHHhcCCcchhhHHHHHHHHHhhhhHHHHHHHHhccC------CCCCchhHHHHHHhcccHH
Confidence            4445566677777778888777777777777777777777777776655444332      1345666777777888887


Q ss_pred             hHHHHHHHHHHhCcccchHHHHHHHHHHHhcCChhhh
Q 036068           90 LGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKA  126 (178)
Q Consensus        90 ~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a  126 (178)
                      +|.+++.....         +.-.+.+|.+.|++.+|
T Consensus       762 EA~KYiprv~~---------l~ekv~ay~~~~~~~eA  789 (829)
T KOG2280|consen  762 EAKKYIPRVGG---------LQEKVKAYLRVGDVKEA  789 (829)
T ss_pred             HHhhhhhccCC---------hHHHHHHHHHhccHHHH
Confidence            77777533211         11456667777766654

>PRK15331 chaperone protein SicA; Provisional

Probab=93.88  E-value=1.2  Score=29.62  Aligned_cols=75  Identities=15%  Similarity=-0.038  Sum_probs=42.2

Q ss_pred             ccccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHhcCChhhhc-----------cchhhHHHHHHHHHhcCChhHHHH
Q 036068           83 ANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ-----------KDKFSWTTMIVGLAISGNGDKALD  151 (178)
Q Consensus        83 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~-----------~~~~~~~~li~~~~~~~~~~~a~~  151 (178)
                      -..|++++|+.+|..+.-.++. +..-|-.|-.++-..+++++|.           .|+..+-..-.++...|+.++|..
T Consensus        48 y~~Gk~~eA~~~F~~L~~~d~~-n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~~~A~~  126 (165)
T PRK15331         48 YNQGRLDEAETFFRFLCIYDFY-NPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKAAKARQ  126 (165)
T ss_pred             HHCCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCHHHHHH
Confidence            4556666666666666554432 2333455555555556666655           345555555566666666666666


Q ss_pred             HHHHHHH
Q 036068          152 MFSQMLR  158 (178)
Q Consensus       152 ~~~~m~~  158 (178)
                      .|....+
T Consensus       127 ~f~~a~~  133 (165)
T PRK15331        127 CFELVNE  133 (165)
T ss_pred             HHHHHHh
Confidence            6665554

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=93.79  E-value=0.19  Score=24.53  Aligned_cols=28  Identities=14%  Similarity=0.287  Sum_probs=24.3

Q ss_pred             hhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 036068          131 FSWTTMIVGLAISGNGDKALDMFSQMLR  158 (178)
Q Consensus       131 ~~~~~li~~~~~~~~~~~a~~~~~~m~~  158 (178)
                      .+++.|...|...|++++|.+++++..+
T Consensus         3 ~~~~~la~~~~~~g~~~~A~~~~~~al~   30 (42)
T PF13374_consen    3 SALNNLANAYRAQGRYEEALELLEEALE   30 (42)
T ss_dssp             HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence            4788999999999999999999999875

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=93.77  E-value=1.4  Score=33.27  Aligned_cols=141  Identities=10%  Similarity=0.073  Sum_probs=78.9

Q ss_pred             HHHHHhcCChhHHHHHhccCCC---CChhHHHHHH-HHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHHhccccch
Q 036068           13 VSRYINRGQVDIARQCFDQMPE---RDYVLWTAMI-DGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANLRAL   88 (178)
Q Consensus        13 i~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li-~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~   88 (178)
                      ++-+...+++..|..+++.-..   ......+..| ..+...|++++|...+.-+.... .|+...+..+.-+..-.|.+
T Consensus        29 Ledfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~Y  107 (557)
T KOG3785|consen   29 LEDFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQY  107 (557)
T ss_pred             HHHHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHHH
Confidence            5566677788888887775432   1122333333 35567788888888887766643 45555555555555666777


Q ss_pred             hhHHHHHHHHHHhCcccchHHHHHHHHHHHhcCChhhhc-------cchhhHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 036068           89 DLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ-------KDKFSWTTMIVGLAISGNGDKALDMFSQMLRA  159 (178)
Q Consensus        89 ~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~-------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~  159 (178)
                      .+|.++-...     +-++.--..+...--|.++-++..       ....---.|.+.---.-.+.+|.++|++.+..
T Consensus       108 ~eA~~~~~ka-----~k~pL~~RLlfhlahklndEk~~~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~d  180 (557)
T KOG3785|consen  108 IEAKSIAEKA-----PKTPLCIRLLFHLAHKLNDEKRILTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQD  180 (557)
T ss_pred             HHHHHHHhhC-----CCChHHHHHHHHHHHHhCcHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            7777664322     223444445555555666655433       11111112222222234567888899888765

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=93.73  E-value=0.55  Score=39.85  Aligned_cols=117  Identities=15%  Similarity=0.076  Sum_probs=56.4

Q ss_pred             HHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHHhccccchhhHHHHHHHHHHhCcccchHHHHHHHH--H
Q 036068           39 LWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALID--M  116 (178)
Q Consensus        39 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~--~  116 (178)
                      .|..|-..|+..-+...|..+|++..+.. .-+........+.|++..+++.|..+.-...+.. +.....+|..-.  .
T Consensus       494 af~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~I~l~~~qka-~a~~~k~nW~~rG~y  571 (1238)
T KOG1127|consen  494 AFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFEICLRAAQKA-PAFACKENWVQRGPY  571 (1238)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHHHHHHHhhhc-hHHHHHhhhhhcccc
Confidence            34455555554445555555555544432 1234445555556666666666555521111110 000111111111  1


Q ss_pred             HHhcCChhhhc-----------cchhhHHHHHHHHHhcCChhHHHHHHHHHH
Q 036068          117 YCICADVEKAQ-----------KDKFSWTTMIVGLAISGNGDKALDMFSQML  157 (178)
Q Consensus       117 ~~~~~~~~~a~-----------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~  157 (178)
                      |-+.++..++.           .|...|..+..+|...|++..|..+|.+..
T Consensus       572 yLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs  623 (1238)
T KOG1127|consen  572 YLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKAS  623 (1238)
T ss_pred             ccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhH
Confidence            22333333332           367777777777777777777777776654

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=93.73  E-value=2.7  Score=35.44  Aligned_cols=56  Identities=13%  Similarity=0.120  Sum_probs=39.9

Q ss_pred             HHHHHHHHHHhcCChhHHHHHhccCCC------------------------CChhHHHHHHHHHhhcCChhHHHHHHHHh
Q 036068            8 SWTAIVSRYINRGQVDIARQCFDQMPE------------------------RDYVLWTAMIDGYLRVNRFREALTLFQEM   63 (178)
Q Consensus         8 ~~~~li~~~~~~~~~~~a~~~~~~m~~------------------------~~~~~~~~li~~~~~~~~~~~a~~~~~~m   63 (178)
                      .|.=+-..+-..|+.+.|+.+|...+.                        .|....-.|-+.|...|++.+|..+|.+.
T Consensus       914 L~~WWgqYlES~GemdaAl~~Y~~A~D~fs~VrI~C~qGk~~kAa~iA~esgd~AAcYhlaR~YEn~g~v~~Av~FfTrA  993 (1416)
T KOG3617|consen  914 LYSWWGQYLESVGEMDAALSFYSSAKDYFSMVRIKCIQGKTDKAARIAEESGDKAACYHLARMYENDGDVVKAVKFFTRA  993 (1416)
T ss_pred             HHHHHHHHHhcccchHHHHHHHHHhhhhhhheeeEeeccCchHHHHHHHhcccHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence            333345555667888888888876652                        26666667888888889999998888764

>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]

Probab=93.65  E-value=2.7  Score=32.85  Aligned_cols=133  Identities=13%  Similarity=0.062  Sum_probs=94.2

Q ss_pred             ChhHHHHHHHHHhhcCChhHHHHHHHHhHhCC-CCCcHHHHHHHHHHhccccchhhHHHHHHHHHHhCcccchHHHHHHH
Q 036068           36 DYVLWTAMIDGYLRVNRFREALTLFQEMQTSN-IMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALI  114 (178)
Q Consensus        36 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll  114 (178)
                      -...|...|....+..-.+.|..+|-+..+.| +.+++..++++|..++. |+...|..+|+.=...- .-++.--+..+
T Consensus       396 ~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~-~d~~ta~~ifelGl~~f-~d~~~y~~kyl  473 (660)
T COG5107         396 LTFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYAT-GDRATAYNIFELGLLKF-PDSTLYKEKYL  473 (660)
T ss_pred             hhhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHhc-CCcchHHHHHHHHHHhC-CCchHHHHHHH
Confidence            45578888888888888999999999999988 68889999999998875 57888889887543332 22233344556


Q ss_pred             HHHHhcCChhhhc-----------cc--hhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhHHHHHH
Q 036068          115 DMYCICADVEKAQ-----------KD--KFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVL  172 (178)
Q Consensus       115 ~~~~~~~~~~~a~-----------~~--~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li  172 (178)
                      ..+.+.++-+.|.           .+  ...|..+|.--..-|+...|..+=++|.+.  -|-..+...+.
T Consensus       474 ~fLi~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~--~pQen~~evF~  542 (660)
T COG5107         474 LFLIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFREL--VPQENLIEVFT  542 (660)
T ss_pred             HHHHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHH--cCcHhHHHHHH
Confidence            6666666655554           23  567888888888888888888777777653  44444444433

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=93.54  E-value=2.9  Score=35.83  Aligned_cols=150  Identities=15%  Similarity=0.094  Sum_probs=100.0

Q ss_pred             HHHHHHHHHHhcCChhHHHHHhccCCC---CChhHHHHHHHHHhhcCChhHHHHHHHHhHhCC-CCCcHHHHHHHHHHhc
Q 036068            8 SWTAIVSRYINRGQVDIARQCFDQMPE---RDYVLWTAMIDGYLRVNRFREALTLFQEMQTSN-IMGDEFTIVSILTARA   83 (178)
Q Consensus         8 ~~~~li~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~-~~~~~~~~~~ll~~~~   83 (178)
                      .|..|-..|..--+...|...|++..+   .+...+..+...|++..+++.|..+.-.--+.. .......|.-.--.+.
T Consensus       494 af~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~yyL  573 (1238)
T KOG1127|consen  494 AFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPYYL  573 (1238)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhcccccc
Confidence            466666667666677778888876654   477788889999999999999998832221111 0111122222223356


Q ss_pred             cccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHhcCChhhhc---------cchhhHHHHH--HHHHhcCChhHHHHH
Q 036068           84 NLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ---------KDKFSWTTMI--VGLAISGNGDKALDM  152 (178)
Q Consensus        84 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~---------~~~~~~~~li--~~~~~~~~~~~a~~~  152 (178)
                      +.++..++..-|+......+ .|...|..+..+|.+.|.+..|.         +....|....  ..-|..|.+++++..
T Consensus       574 ea~n~h~aV~~fQsALR~dP-kD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd~GkYkeald~  652 (1238)
T KOG1127|consen  574 EAHNLHGAVCEFQSALRTDP-KDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVMECDNGKYKEALDA  652 (1238)
T ss_pred             CccchhhHHHHHHHHhcCCc-hhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHHHhhhHHHHHHH
Confidence            77777778777777766653 47888999999999999998887         3344444443  334567888888888


Q ss_pred             HHHHHH
Q 036068          153 FSQMLR  158 (178)
Q Consensus       153 ~~~m~~  158 (178)
                      +.....
T Consensus       653 l~~ii~  658 (1238)
T KOG1127|consen  653 LGLIIY  658 (1238)
T ss_pred             HHHHHH
Confidence            777653

>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed

Probab=93.47  E-value=1.6  Score=30.09  Aligned_cols=79  Identities=14%  Similarity=0.043  Sum_probs=58.5

Q ss_pred             HHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHHhccccchhhHHHHHHHHHH---hCcccchHHHHHHHHHHHhcCC
Q 036068           46 GYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDK---NKVKNDIFAGNALIDMYCICAD  122 (178)
Q Consensus        46 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~~~~~ll~~~~~~~~  122 (178)
                      .+.+.|+ +.|.+.|-++...+..-++..-..+...|. ..+.+++.+++....+   .+-.+++..+.+|...|.+.|+
T Consensus       116 ~Wsr~~d-~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~  193 (203)
T PF11207_consen  116 HWSRFGD-QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKN  193 (203)
T ss_pred             HhhccCc-HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcc
Confidence            3445565 778888888888877667777777777776 4578888888876654   2336788888899998888888


Q ss_pred             hhhh
Q 036068          123 VEKA  126 (178)
Q Consensus       123 ~~~a  126 (178)
                      ++.|
T Consensus       194 ~e~A  197 (203)
T PF11207_consen  194 YEQA  197 (203)
T ss_pred             hhhh
Confidence            8865

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=93.46  E-value=0.52  Score=39.10  Aligned_cols=109  Identities=13%  Similarity=0.077  Sum_probs=54.4

Q ss_pred             HHHHHHHhcCChhHHHHHhccCCCCChhHHHHHHHHH----hhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHHhcccc
Q 036068           11 AIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGY----LRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANLR   86 (178)
Q Consensus        11 ~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~li~~~----~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~   86 (178)
                      .-|+.+.+...+..|..+.+.-.. |..+-..++..|    .+.|+.++|..-|-+-... +.|.     .+++-|....
T Consensus       339 ~kL~iL~kK~ly~~Ai~LAk~~~~-d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~s-----~Vi~kfLdaq  411 (933)
T KOG2114|consen  339 TKLDILFKKNLYKVAINLAKSQHL-DEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEPS-----EVIKKFLDAQ  411 (933)
T ss_pred             HHHHHHHHhhhHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CChH-----HHHHHhcCHH
Confidence            345666666777777776665443 222333333322    3456666666555443221 1111     1344444445


Q ss_pred             chhhHHHHHHHHHHhCcccchHHHHHHHHHHHhcCChhhhc
Q 036068           87 ALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ  127 (178)
Q Consensus        87 ~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~  127 (178)
                      ++.+-..+++.+.+.|.. +...-+.|+.+|.|.++.++..
T Consensus       412 ~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~  451 (933)
T KOG2114|consen  412 RIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLT  451 (933)
T ss_pred             HHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHH
Confidence            555555555555555543 2333455555666555555443

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=93.39  E-value=3.1  Score=32.60  Aligned_cols=112  Identities=17%  Similarity=0.140  Sum_probs=78.0

Q ss_pred             HHHHHHhcCChhHHHHHhccCCCCChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHHhccccchhhH
Q 036068           12 IVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANLRALDLG   91 (178)
Q Consensus        12 li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a   91 (178)
                      -.+...+.|+++.|.++.++..  +...|..|-....+.|+++-|.++|++...         |..++-.|.-.|+.+..
T Consensus       324 rFeLAl~lg~L~~A~~~a~~~~--~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L  392 (443)
T PF04053_consen  324 RFELALQLGNLDIALEIAKELD--DPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKL  392 (443)
T ss_dssp             HHHHHHHCT-HHHHHHHCCCCS--THHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHH
T ss_pred             HhHHHHhcCCHHHHHHHHHhcC--cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHH
Confidence            3456678999999999999887  566999999999999999999999998532         45566677777887777


Q ss_pred             HHHHHHHHHhCcccchHHHHHHHHHHHhcCChhhhccchhhHHHHHHHHHhcCChhHHH
Q 036068           92 EWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQKDKFSWTTMIVGLAISGNGDKAL  150 (178)
Q Consensus        92 ~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~li~~~~~~~~~~~a~  150 (178)
                      .++.+.....|-      +|.....+...|+.++          -+..+.+.|++.+|-
T Consensus       393 ~kl~~~a~~~~~------~n~af~~~~~lgd~~~----------cv~lL~~~~~~~~A~  435 (443)
T PF04053_consen  393 SKLAKIAEERGD------INIAFQAALLLGDVEE----------CVDLLIETGRLPEAA  435 (443)
T ss_dssp             HHHHHHHHHTT-------HHHHHHHHHHHT-HHH----------HHHHHHHTT-HHHHH
T ss_pred             HHHHHHHHHccC------HHHHHHHHHHcCCHHH----------HHHHHHHcCCchHHH
Confidence            777766666652      4444555555566553          345556666666554

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=93.38  E-value=0.94  Score=36.88  Aligned_cols=117  Identities=11%  Similarity=0.027  Sum_probs=69.4

Q ss_pred             CChhHHHHHhccCCCCChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHHhccccchhhHHHHHHHHH
Q 036068           20 GQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYID   99 (178)
Q Consensus        20 ~~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~   99 (178)
                      |-.+.+.++-+++...+..+...+-..+.+...+..|-++|++|-..         ..+.+.....+++++|+.+-+..-
T Consensus       730 gW~d~lidI~rkld~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~---------ksiVqlHve~~~W~eAFalAe~hP  800 (1081)
T KOG1538|consen  730 GWVDMLIDIARKLDKAEREPLLLCATYLKKLDSPGLAAEIFLKMGDL---------KSLVQLHVETQRWDEAFALAEKHP  800 (1081)
T ss_pred             cHHHHHHHHHhhcchhhhhHHHHHHHHHhhccccchHHHHHHHhccH---------HHHhhheeecccchHhHhhhhhCc
Confidence            33333333333444445555555555555566666777777766332         235666777778888777654332


Q ss_pred             HhCcccchHHHHHHHHHHHhcCChhhhccchhhHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 036068          100 KNKVKNDIFAGNALIDMYCICADVEKAQKDKFSWTTMIVGLAISGNGDKALDMFSQMLRA  159 (178)
Q Consensus       100 ~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~  159 (178)
                      +    .-+.+|-.--+-++...++++|          -.+|-+.|+-.+|.++++++...
T Consensus       801 e----~~~dVy~pyaqwLAE~DrFeEA----------qkAfhkAGr~~EA~~vLeQLtnn  846 (1081)
T KOG1538|consen  801 E----FKDDVYMPYAQWLAENDRFEEA----------QKAFHKAGRQREAVQVLEQLTNN  846 (1081)
T ss_pred             c----ccccccchHHHHhhhhhhHHHH----------HHHHHHhcchHHHHHHHHHhhhh
Confidence            2    2233344444445555555554          46788999999999999998764

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=93.33  E-value=3  Score=32.27  Aligned_cols=151  Identities=13%  Similarity=0.029  Sum_probs=107.1

Q ss_pred             hhHHHHHHHHHHhcCChhHHHHHhccCC--CC-ChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHH-HHH
Q 036068            6 VISWTAIVSRYINRGQVDIARQCFDQMP--ER-DYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSI-LTA   81 (178)
Q Consensus         6 ~~~~~~li~~~~~~~~~~~a~~~~~~m~--~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l-l~~   81 (178)
                      +..|-.=-..+...|+.++|.--|+...  .| +...|.-|++.|...|.+.+|.-.-+...+. +.-++.+.+.+ ...
T Consensus       334 ~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V  412 (564)
T KOG1174|consen  334 HEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLV  412 (564)
T ss_pred             chHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhccee
Confidence            3344434466778999999999998755  44 8899999999999999999988766553332 23455665544 233


Q ss_pred             hccc-cchhhHHHHHHHHHHhCcccchHHHHHHHHHHHhcCChhhhc----------cchhhHHHHHHHHHhcCChhHHH
Q 036068           82 RANL-RALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ----------KDKFSWTTMIVGLAISGNGDKAL  150 (178)
Q Consensus        82 ~~~~-~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~----------~~~~~~~~li~~~~~~~~~~~a~  150 (178)
                      |... .--++|..+++.-.+..+.. ....+.+...+..-|..+++.          +|...-+.|-+.++..+.+.+|.
T Consensus       413 ~~~dp~~rEKAKkf~ek~L~~~P~Y-~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~~LH~~Lgd~~~A~Ne~Q~am  491 (564)
T KOG1174|consen  413 LFPDPRMREKAKKFAEKSLKINPIY-TPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDVNLHNHLGDIMRAQNEPQKAM  491 (564)
T ss_pred             eccCchhHHHHHHHHHhhhccCCcc-HHHHHHHHHHHHhhCccchHHHHHHHHHhhccccHHHHHHHHHHHHhhhHHHHH
Confidence            4333 33467888877666554332 445566777777778877776          78888899999999999999999


Q ss_pred             HHHHHHHH
Q 036068          151 DMFSQMLR  158 (178)
Q Consensus       151 ~~~~~m~~  158 (178)
                      +.|...++
T Consensus       492 ~~y~~ALr  499 (564)
T KOG1174|consen  492 EYYYKALR  499 (564)
T ss_pred             HHHHHHHh
Confidence            98887765

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=93.03  E-value=3  Score=31.48  Aligned_cols=112  Identities=13%  Similarity=0.073  Sum_probs=83.1

Q ss_pred             HHhhcCChhHHHHHHHHhHhCCC------------CCcH--HHHHHHHHHhccccchhhHHHHHHHHHHhCcccchHHHH
Q 036068           46 GYLRVNRFREALTLFQEMQTSNI------------MGDE--FTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGN  111 (178)
Q Consensus        46 ~~~~~~~~~~a~~~~~~m~~~~~------------~~~~--~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~  111 (178)
                      .+.+.|.++.|..=|+..+.+.-            .+..  +.....+..+...|+...|+.....+.+.. +.+...+.
T Consensus       115 vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~-~Wda~l~~  193 (504)
T KOG0624|consen  115 VLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQ-PWDASLRQ  193 (504)
T ss_pred             hhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcC-cchhHHHH
Confidence            45677889999998988877631            1111  122234455667789999999999988875 56888888


Q ss_pred             HHHHHHHhcCChhhhc-----------cchhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 036068          112 ALIDMYCICADVEKAQ-----------KDKFSWTTMIVGLAISGNGDKALDMFSQMLR  158 (178)
Q Consensus       112 ~ll~~~~~~~~~~~a~-----------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~  158 (178)
                      .-..+|...|++..|.           .+..++--+-..+-..|+.+.++...++.++
T Consensus       194 ~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLK  251 (504)
T KOG0624|consen  194 ARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLK  251 (504)
T ss_pred             HHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHc
Confidence            8999999999999987           3566666666777788888888888887775

>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1

Probab=92.84  E-value=2  Score=28.82  Aligned_cols=24  Identities=8%  Similarity=-0.115  Sum_probs=10.8

Q ss_pred             HhCCCCCcHHHHHHHHHHhccccc
Q 036068           64 QTSNIMGDEFTIVSILTARANLRA   87 (178)
Q Consensus        64 ~~~~~~~~~~~~~~ll~~~~~~~~   87 (178)
                      .+.++.|+...+..+++.+.+.|+
T Consensus        21 ~~~~i~~~~~L~~lli~lLi~~~~   44 (167)
T PF07035_consen   21 NQHNIPVQHELYELLIDLLIRNGQ   44 (167)
T ss_pred             HHcCCCCCHHHHHHHHHHHHHcCC
Confidence            334444444444444444444444

>PF13929 mRNA_stabil: mRNA stabilisation

Probab=92.78  E-value=2.4  Score=30.98  Aligned_cols=105  Identities=14%  Similarity=0.012  Sum_probs=59.2

Q ss_pred             cCChhHHHHHhccCCC-----CChhHHHHHHHHHhhcCC--hhHHHHHHHHhHh-CCCCCcHHHHHHHHHHhccccchhh
Q 036068           19 RGQVDIARQCFDQMPE-----RDYVLWTAMIDGYLRVNR--FREALTLFQEMQT-SNIMGDEFTIVSILTARANLRALDL   90 (178)
Q Consensus        19 ~~~~~~a~~~~~~m~~-----~~~~~~~~li~~~~~~~~--~~~a~~~~~~m~~-~~~~~~~~~~~~ll~~~~~~~~~~~   90 (178)
                      +..+.+|+.+|+...-     .|..+-..|++......+  ...-.++.+.+.. .|..++..+...+++.+++.+++++
T Consensus       141 N~~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~k  220 (292)
T PF13929_consen  141 NKIVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNK  220 (292)
T ss_pred             hHHHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHH
Confidence            4445667777773221     366677777776665221  2222223333322 2346677777778888888888888


Q ss_pred             HHHHHHHHHHh-CcccchHHHHHHHHHHHhcCCh
Q 036068           91 GEWIKTYIDKN-KVKNDIFAGNALIDMYCICADV  123 (178)
Q Consensus        91 a~~~~~~m~~~-~~~~~~~~~~~ll~~~~~~~~~  123 (178)
                      ..+++...... ++..|...|...|......|+.
T Consensus       221 l~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~  254 (292)
T PF13929_consen  221 LFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQ  254 (292)
T ss_pred             HHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCH
Confidence            77777666554 4444455555555444444443

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=92.68  E-value=1  Score=35.50  Aligned_cols=76  Identities=14%  Similarity=0.007  Sum_probs=47.8

Q ss_pred             hccccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHhcCChhhhc----------cc-hhhHHHHHHHHHhcCChhHHH
Q 036068           82 RANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ----------KD-KFSWTTMIVGLAISGNGDKAL  150 (178)
Q Consensus        82 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~----------~~-~~~~~~li~~~~~~~~~~~a~  150 (178)
                      .+..|+++.|..+|...+...+. +-..|..-..+|.+.|++++|.          |+ ...|+-.-.+..-.|++++|+
T Consensus        12 a~s~~d~~~ai~~~t~ai~l~p~-nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg~~~eA~   90 (539)
T KOG0548|consen   12 AFSSGDFETAIRLFTEAIMLSPT-NHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLGDYEEAI   90 (539)
T ss_pred             hcccccHHHHHHHHHHHHccCCC-ccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhcccHHHHH
Confidence            44556666666666665554432 4445566666666666666665          33 345666666777778888888


Q ss_pred             HHHHHHHH
Q 036068          151 DMFSQMLR  158 (178)
Q Consensus       151 ~~~~~m~~  158 (178)
                      .-|.+-++
T Consensus        91 ~ay~~GL~   98 (539)
T KOG0548|consen   91 LAYSEGLE   98 (539)
T ss_pred             HHHHHHhh
Confidence            88877665

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=92.61  E-value=1.7  Score=27.42  Aligned_cols=101  Identities=15%  Similarity=0.021  Sum_probs=69.8

Q ss_pred             HHHHHHhcCChhHHHHHhccCCCC---C---hhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCc----HHHHHHHHHH
Q 036068           12 IVSRYINRGQVDIARQCFDQMPER---D---YVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGD----EFTIVSILTA   81 (178)
Q Consensus        12 li~~~~~~~~~~~a~~~~~~m~~~---~---~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~----~~~~~~ll~~   81 (178)
                      +-.++-..|+.++|+.+|++....   +   ...+--+-..+...|++++|..+|++.....  |+    ......+.-+
T Consensus         7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~--p~~~~~~~l~~f~Al~   84 (120)
T PF12688_consen    7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEF--PDDELNAALRVFLALA   84 (120)
T ss_pred             HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCccccHHHHHHHHHH
Confidence            456677899999999999976542   2   2345557778889999999999999987652  33    2222233446


Q ss_pred             hccccchhhHHHHHHHHHHhCcccchHHHHHHHHHHH
Q 036068           82 RANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYC  118 (178)
Q Consensus        82 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~  118 (178)
                      +...|+.++|.+.+-....    ++..-|.--|..|.
T Consensus        85 L~~~gr~~eAl~~~l~~la----~~~~~y~ra~~~ya  117 (120)
T PF12688_consen   85 LYNLGRPKEALEWLLEALA----ETLPRYRRAIRFYA  117 (120)
T ss_pred             HHHCCCHHHHHHHHHHHHH----HHHHHHHHHHHHHH
Confidence            7888999999888755443    23335666666554

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=92.50  E-value=3.1  Score=30.31  Aligned_cols=118  Identities=9%  Similarity=0.022  Sum_probs=62.7

Q ss_pred             hHHHHHHHHHhhcCChhHHHHHHHHhH---hCCCCCc--HHHHHHHHHHhccccchhhHHHHHHHHHHh------Ccccc
Q 036068           38 VLWTAMIDGYLRVNRFREALTLFQEMQ---TSNIMGD--EFTIVSILTARANLRALDLGEWIKTYIDKN------KVKND  106 (178)
Q Consensus        38 ~~~~~li~~~~~~~~~~~a~~~~~~m~---~~~~~~~--~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~------~~~~~  106 (178)
                      ..|......+.+.++...|-..|.+.-   +.+ .|+  +..|...+..|.+.|++..+-+++..+-+.      .++.-
T Consensus        56 ~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~lA~~ye~~~~d~e~A  134 (282)
T PF14938_consen   56 EAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREAGRFSQAAKCLKELAEIYEEQLGDYEKA  134 (282)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHCCTT--HHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHcCCHHHH
Confidence            344455555555555444444443321   111 222  234455555566666666665555544321      11222


Q ss_pred             hHHHHHHHHHHHhcCChhhhccchhhHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 036068          107 IFAGNALIDMYCICADVEKAQKDKFSWTTMIVGLAISGNGDKALDMFSQMLRA  159 (178)
Q Consensus       107 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~  159 (178)
                      ...|...+..|...|....   -..++..+...+.+.|++++|.++|++....
T Consensus       135 i~~Y~~A~~~y~~e~~~~~---a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~  184 (282)
T PF14938_consen  135 IEYYQKAAELYEQEGSPHS---AAECLLKAADLYARLGRYEEAIEIYEEVAKK  184 (282)
T ss_dssp             HHHHHHHHHHHHHTT-HHH---HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHCCChhh---HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence            3445555555555553332   2456677888899999999999999998764

>PF13762 MNE1: Mitochondrial splicing apparatus component

Probab=92.50  E-value=2  Score=28.05  Aligned_cols=98  Identities=18%  Similarity=0.128  Sum_probs=68.3

Q ss_pred             hHhCCCCCcH--HHHHHHHHHhccccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHhcCChhhhccchhhHHHHHHHH
Q 036068           63 MQTSNIMGDE--FTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQKDKFSWTTMIVGL  140 (178)
Q Consensus        63 m~~~~~~~~~--~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~li~~~  140 (178)
                      |.+.+..++.  ...+.++.-....+.+....++++.+..-             ..-.-.|.     .+...|++++.+.
T Consensus        28 ~~~~~~~~~~k~~fiN~iL~hl~~~~nf~~~v~~L~~l~~l-------------~~~~~~~~-----~~~ssf~~if~Sl   89 (145)
T PF13762_consen   28 MQEENASQSTKTIFINCILNHLASYQNFSGVVSILEHLHFL-------------NTDNIIGW-----LDNSSFHIIFKSL   89 (145)
T ss_pred             hhhcccChhHHHHHHHHHHHHHHHccchHHHHHHHHHHHHh-------------hHHHHhhh-----cccchHHHHHHHH
Confidence            4545555554  34667777777777888888888777111             11000111     3566889999999


Q ss_pred             HhcCC-hhHHHHHHHHHHHcCCCCChhHHHHHHhhhhcC
Q 036068          141 AISGN-GDKALDMFSQMLRASIKPDEVAYVGVLSACTHN  178 (178)
Q Consensus       141 ~~~~~-~~~a~~~~~~m~~~g~~p~~~t~~~li~a~~~~  178 (178)
                      .+..- ---+..+|+-|++.+.+++..-|..+|.+|.++
T Consensus        90 snSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~li~~~l~g  128 (145)
T PF13762_consen   90 SNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCLIKAALRG  128 (145)
T ss_pred             ccChHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcC
Confidence            77766 456788999999988999999999999998764

>PF13929 mRNA_stabil: mRNA stabilisation

Probab=92.34  E-value=1.5  Score=32.00  Aligned_cols=86  Identities=7%  Similarity=0.028  Sum_probs=66.6

Q ss_pred             CCChhHHHHHHHHHhhcCChhHHHHHHHHhHhC-CCCCcHHHHHHHHHHhccccchhhHHHHHHH-----HHHhCcccch
Q 036068           34 ERDYVLWTAMIDGYLRVNRFREALTLFQEMQTS-NIMGDEFTIVSILTARANLRALDLGEWIKTY-----IDKNKVKNDI  107 (178)
Q Consensus        34 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~-----m~~~~~~~~~  107 (178)
                      .++..+...+|..+++.++|.+-+++|+..... +..-|...|..+|+...+.|+..-...+...     +.+.|+..+.
T Consensus       199 ~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~GhLLwikR~~V~v~~  278 (292)
T PF13929_consen  199 SLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDDGHLLWIKRNNVDVTD  278 (292)
T ss_pred             CCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhCCCeEEeeecCCcCCH
Confidence            458888889999999999999999999887555 5566788899999999999998888777752     4466677766


Q ss_pred             HHHHHHHHHHHh
Q 036068          108 FAGNALIDMYCI  119 (178)
Q Consensus       108 ~~~~~ll~~~~~  119 (178)
                      ..-..+-..+-+
T Consensus       279 ~L~~~L~~LF~~  290 (292)
T PF13929_consen  279 ELRSQLSELFKK  290 (292)
T ss_pred             HHHHHHHHHHHh
Confidence            666666555544

>KOG2796 consensus Uncharacterized conserved protein [Function unknown]

Probab=92.32  E-value=1  Score=32.63  Aligned_cols=120  Identities=9%  Similarity=0.049  Sum_probs=74.8

Q ss_pred             hHHHHHHHHHHhcCChhHHHHHhccCC----CCChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHH---
Q 036068            7 ISWTAIVSRYINRGQVDIARQCFDQMP----ERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSIL---   79 (178)
Q Consensus         7 ~~~~~li~~~~~~~~~~~a~~~~~~m~----~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll---   79 (178)
                      .+-+.++..+.-.|.+.-...++++..    +.++.....|.+.-.+.||.+.|...|++..+..-..|..+++.++   
T Consensus       178 ~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n  257 (366)
T KOG2796|consen  178 RVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMN  257 (366)
T ss_pred             HHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhh
Confidence            345667777777777766666666554    3477778888888888888888888888776544444544444443   


Q ss_pred             --HHhccccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHhcCChhhhc
Q 036068           80 --TARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ  127 (178)
Q Consensus        80 --~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~  127 (178)
                        ..+.-.+++..|...+.+....... ++...|.=.-...-.|+..+|.
T Consensus       258 ~a~i~lg~nn~a~a~r~~~~i~~~D~~-~~~a~NnKALcllYlg~l~DAi  306 (366)
T KOG2796|consen  258 SAFLHLGQNNFAEAHRFFTEILRMDPR-NAVANNNKALCLLYLGKLKDAL  306 (366)
T ss_pred             hhhheecccchHHHHHHHhhccccCCC-chhhhchHHHHHHHHHHHHHHH
Confidence              3445556677777777767665532 3333333333344456666665

>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised

Probab=92.18  E-value=0.78  Score=23.68  Aligned_cols=38  Identities=8%  Similarity=0.068  Sum_probs=32.5

Q ss_pred             HHHHHhcCChhHHHHHHHHHHHcCCCCChhHHHHHHhh
Q 036068          137 IVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA  174 (178)
Q Consensus       137 i~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~a  174 (178)
                      +....+.|-..++..++++|.+.|+..+...|..+++-
T Consensus         9 L~~Ak~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~~   46 (48)
T PF11848_consen    9 LLLAKRRGLISEVKPLLDRLQQAGFRISPKLIEEILRR   46 (48)
T ss_pred             HHHHHHcCChhhHHHHHHHHHHcCcccCHHHHHHHHHH
Confidence            34456788899999999999999999999999988864

This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=91.91  E-value=4.3  Score=30.68  Aligned_cols=111  Identities=10%  Similarity=0.069  Sum_probs=65.8

Q ss_pred             HHHhcCChhHHHHHhccCCCCC----------------hhHHH--HHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHH
Q 036068           15 RYINRGQVDIARQCFDQMPERD----------------YVLWT--AMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIV   76 (178)
Q Consensus        15 ~~~~~~~~~~a~~~~~~m~~~~----------------~~~~~--~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~   76 (178)
                      .+.+.|.++.|..=|+...+.+                ...|+  ..+..+...|+..-|+.....+++-. +-|+..+-
T Consensus       115 vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~-~Wda~l~~  193 (504)
T KOG0624|consen  115 VLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQ-PWDASLRQ  193 (504)
T ss_pred             hhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcC-cchhHHHH
Confidence            4567788888777777664311                11122  23445566677777877777777754 44666666


Q ss_pred             HHHHHhccccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHhcCChhhhc
Q 036068           77 SILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ  127 (178)
Q Consensus        77 ~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~  127 (178)
                      .-..+|...|++..|..=++...+..-. ++.++--+-..+...|+.+.++
T Consensus       194 ~Rakc~i~~~e~k~AI~Dlk~askLs~D-nTe~~ykis~L~Y~vgd~~~sL  243 (504)
T KOG0624|consen  194 ARAKCYIAEGEPKKAIHDLKQASKLSQD-NTEGHYKISQLLYTVGDAENSL  243 (504)
T ss_pred             HHHHHHHhcCcHHHHHHHHHHHHhcccc-chHHHHHHHHHHHhhhhHHHHH
Confidence            6677777777777776655554443322 3444444555555566655554

>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]

Probab=91.88  E-value=1.6  Score=28.43  Aligned_cols=69  Identities=4%  Similarity=-0.031  Sum_probs=56.4

Q ss_pred             HHHHHhHhCCCCCcHHHHHHHHHHhccccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHhcCChhhhc
Q 036068           58 TLFQEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ  127 (178)
Q Consensus        58 ~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~  127 (178)
                      ++.+.+++.|++++..= ..+++.+.+.++.-.|.++++.+.+.++..+..|.-.-++.+...|-+....
T Consensus         7 ~~~~~lk~~glr~T~qR-~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~Glv~~~~   75 (145)
T COG0735           7 DAIERLKEAGLRLTPQR-LAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAGLVHRLE   75 (145)
T ss_pred             HHHHHHHHcCCCcCHHH-HHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCCCEEEEE
Confidence            34566777888877543 5678888888888999999999999999999888888889999998877665

>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia

Probab=91.83  E-value=2.6  Score=27.97  Aligned_cols=91  Identities=12%  Similarity=0.016  Sum_probs=52.7

Q ss_pred             HHHHHHhcCChhHHHHHhccCC--CCChhHHHHH-HHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHHhccccch
Q 036068           12 IVSRYINRGQVDIARQCFDQMP--ERDYVLWTAM-IDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANLRAL   88 (178)
Q Consensus        12 li~~~~~~~~~~~a~~~~~~m~--~~~~~~~~~l-i~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~   88 (178)
                      ++..-.+.++.+++..++.-++  .|......++ -..+...|+|.+|.++|+++.+..  |...-...|+-.|... .-
T Consensus        16 ~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~--~~~p~~kALlA~CL~~-~~   92 (160)
T PF09613_consen   16 VLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERA--PGFPYAKALLALCLYA-LG   92 (160)
T ss_pred             HHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccC--CCChHHHHHHHHHHHH-cC
Confidence            3444556788999999998876  3533333222 234567889999999999987764  4433334444444322 22


Q ss_pred             hhHHHHH-HHHHHhCccc
Q 036068           89 DLGEWIK-TYIDKNKVKN  105 (178)
Q Consensus        89 ~~a~~~~-~~m~~~~~~~  105 (178)
                      +..++.+ +++...+..|
T Consensus        93 D~~Wr~~A~evle~~~d~  110 (160)
T PF09613_consen   93 DPSWRRYADEVLESGADP  110 (160)
T ss_pred             ChHHHHHHHHHHhcCCCh
Confidence            3334444 3455555444

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=91.79  E-value=0.54  Score=22.77  Aligned_cols=25  Identities=28%  Similarity=0.502  Sum_probs=12.6

Q ss_pred             HHHHHHHHHhhcCChhHHHHHHHHh
Q 036068           39 LWTAMIDGYLRVNRFREALTLFQEM   63 (178)
Q Consensus        39 ~~~~li~~~~~~~~~~~a~~~~~~m   63 (178)
                      +++.|-..|...|++++|..++++.
T Consensus         4 ~~~~la~~~~~~g~~~~A~~~~~~a   28 (42)
T PF13374_consen    4 ALNNLANAYRAQGRYEEALELLEEA   28 (42)
T ss_dssp             HHHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhhhcchhhHHHHHH
Confidence            4445555555555555555555553

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=91.73  E-value=0.62  Score=21.59  Aligned_cols=29  Identities=14%  Similarity=0.198  Sum_probs=24.7

Q ss_pred             hhHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 036068          131 FSWTTMIVGLAISGNGDKALDMFSQMLRA  159 (178)
Q Consensus       131 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~  159 (178)
                      .+|..+...+...|++++|++.|++.++.
T Consensus         2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~   30 (34)
T PF00515_consen    2 EAYYNLGNAYFQLGDYEEALEYYQRALEL   30 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCchHHHHHHHHHHHH
Confidence            46788889999999999999999998864

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=91.52  E-value=4  Score=31.50  Aligned_cols=143  Identities=9%  Similarity=-0.069  Sum_probs=90.8

Q ss_pred             HHHhcCChhHHHHHhccCCC-CChhHHHHHHHHHh--hcCChhHHHHHHHHhHhCCCCCcHHHHHHHHH-----------
Q 036068           15 RYINRGQVDIARQCFDQMPE-RDYVLWTAMIDGYL--RVNRFREALTLFQEMQTSNIMGDEFTIVSILT-----------   80 (178)
Q Consensus        15 ~~~~~~~~~~a~~~~~~m~~-~~~~~~~~li~~~~--~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~-----------   80 (178)
                      ++.-.|+++.|.+.--...+ .....+...+++.+  -.++.+.+..-|++-++.+  |+...-.+.-.           
T Consensus       178 cl~~~~~~~~a~~ea~~ilkld~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ld--pdh~~sk~~~~~~k~le~~k~~  255 (486)
T KOG0550|consen  178 CLAFLGDYDEAQSEAIDILKLDATNAEALYVRGLCLYYNDNADKAINHFQQALRLD--PDHQKSKSASMMPKKLEVKKER  255 (486)
T ss_pred             hhhhcccchhHHHHHHHHHhcccchhHHHHhcccccccccchHHHHHHHhhhhccC--hhhhhHHhHhhhHHHHHHHHhh
Confidence            44456666666665554443 23334555555443  4567788888888876653  55443332222           


Q ss_pred             --HhccccchhhHHHHHHHHHHhC---cccchHHHHHHHHHHHhcCChhhhc---------cchhhHHHHHHHHH--hcC
Q 036068           81 --ARANLRALDLGEWIKTYIDKNK---VKNDIFAGNALIDMYCICADVEKAQ---------KDKFSWTTMIVGLA--ISG  144 (178)
Q Consensus        81 --~~~~~~~~~~a~~~~~~m~~~~---~~~~~~~~~~ll~~~~~~~~~~~a~---------~~~~~~~~li~~~~--~~~  144 (178)
                        -..+.|.+..|.+.|.+.+...   .+++...|-.......+.|+.++|.         .+...+-.+.++-|  ..+
T Consensus       256 gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le  335 (486)
T KOG0550|consen  256 GNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALE  335 (486)
T ss_pred             hhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHH
Confidence              2256688999999999887643   4556666777777788899999987         23444444444444  358


Q ss_pred             ChhHHHHHHHHHHHc
Q 036068          145 NGDKALDMFSQMLRA  159 (178)
Q Consensus       145 ~~~~a~~~~~~m~~~  159 (178)
                      +|++|.+-|++..+.
T Consensus       336 ~~e~AV~d~~~a~q~  350 (486)
T KOG0550|consen  336 KWEEAVEDYEKAMQL  350 (486)
T ss_pred             HHHHHHHHHHHHHhh
Confidence            889999888877654

>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]

Probab=91.28  E-value=1.7  Score=27.69  Aligned_cols=59  Identities=8%  Similarity=-0.017  Sum_probs=46.0

Q ss_pred             HHHHHHHhHhCCCCCcHHHHHHHHHHhccccchhhHHHHHHHHHHhCcccchHHHHHHHH
Q 036068           56 ALTLFQEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALID  115 (178)
Q Consensus        56 a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~  115 (178)
                      ..+.++.+....+.|+......-+++|.+.+|+..|..+++.++..- .+.-.+|..++.
T Consensus        68 vrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K~-g~~k~~Y~y~v~  126 (149)
T KOG4077|consen   68 VRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDKC-GAQKQVYPYYVK  126 (149)
T ss_pred             HHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHhc-ccHHHHHHHHHH
Confidence            45566777778899999999999999999999999999999887542 222335666554

>TIGR03504 FimV_Cterm FimV C-terminal domain

Probab=90.90  E-value=0.82  Score=23.17  Aligned_cols=25  Identities=16%  Similarity=0.376  Sum_probs=15.8

Q ss_pred             HHHHHhhcCChhHHHHHHHHhHhCC
Q 036068           43 MIDGYLRVNRFREALTLFQEMQTSN   67 (178)
Q Consensus        43 li~~~~~~~~~~~a~~~~~~m~~~~   67 (178)
                      |-.+|...|+.+.|.++++++...|
T Consensus         5 LA~ayie~Gd~e~Ar~lL~evl~~~   29 (44)
T TIGR03504         5 LARAYIEMGDLEGARELLEEVIEEG   29 (44)
T ss_pred             HHHHHHHcCChHHHHHHHHHHHHcC
Confidence            4456666666666666666666544

This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=90.86  E-value=3.6  Score=31.42  Aligned_cols=89  Identities=12%  Similarity=0.126  Sum_probs=69.5

Q ss_pred             HHHHhcCChhHHHHHhccCCC------------------CChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHH
Q 036068           14 SRYINRGQVDIARQCFDQMPE------------------RDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTI   75 (178)
Q Consensus        14 ~~~~~~~~~~~a~~~~~~m~~------------------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~   75 (178)
                      ..+.+.|++..|...|++..+                  .-..++.-|.-.+.+.+++.+|+..=++.+..+ .+|.-..
T Consensus       216 n~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KAL  294 (397)
T KOG0543|consen  216 NVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKAL  294 (397)
T ss_pred             hHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhHH
Confidence            467889999998888776431                  133456677788889999999999888888876 4566666


Q ss_pred             HHHHHHhccccchhhHHHHHHHHHHhCc
Q 036068           76 VSILTARANLRALDLGEWIKTYIDKNKV  103 (178)
Q Consensus        76 ~~ll~~~~~~~~~~~a~~~~~~m~~~~~  103 (178)
                      --=-+++...++++.|...|+.+++-.+
T Consensus       295 yRrG~A~l~~~e~~~A~~df~ka~k~~P  322 (397)
T KOG0543|consen  295 YRRGQALLALGEYDLARDDFQKALKLEP  322 (397)
T ss_pred             HHHHHHHHhhccHHHHHHHHHHHHHhCC
Confidence            6667788999999999999999988653

>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH

Probab=90.76  E-value=3.6  Score=28.04  Aligned_cols=94  Identities=10%  Similarity=0.020  Sum_probs=57.8

Q ss_pred             hhHHHHHHHHhHhCCCCCc--HHHHHH-----HHHHhccccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHhcCChhh
Q 036068           53 FREALTLFQEMQTSNIMGD--EFTIVS-----ILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEK  125 (178)
Q Consensus        53 ~~~a~~~~~~m~~~~~~~~--~~~~~~-----ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~  125 (178)
                      .+.|..+|+.+.+.--.|.  ......     .+-.|.+.|.+++|.++++++..   .|+......-+....+..+...
T Consensus        85 LESAl~v~~~I~~E~~~~~~lhe~i~~lik~~aV~VCm~~g~Fk~A~eiLkr~~~---d~~~~~~r~kL~~II~~Kd~~h  161 (200)
T cd00280          85 LESALMVLESIEKEFSLPETLHEEIRKLIKEQAVAVCMENGEFKKAEEVLKRLFS---DPESQKLRMKLLMIIREKDPAH  161 (200)
T ss_pred             HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhc---CCCchhHHHHHHHHHHcccccc
Confidence            5789999999877643331  122222     33468999999999999999987   3455555666666666555443


Q ss_pred             hccchhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 036068          126 AQKDKFSWTTMIVGLAISGNGDKALDMFSQMLR  158 (178)
Q Consensus       126 a~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~  158 (178)
                               .++..+.-..-.++..++++.-.+
T Consensus       162 ---------~~lqnFSy~~~~~ki~~~ve~~~~  185 (200)
T cd00280         162 ---------PVLQNFSYSHFMQKMKSYVELVLD  185 (200)
T ss_pred             ---------HHHHhccHHHHHHHHHHHHHHHhc
Confidence                     344444333333455555555443

Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=90.74  E-value=2.5  Score=34.92  Aligned_cols=107  Identities=11%  Similarity=0.060  Sum_probs=77.9

Q ss_pred             HHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHHhccccchhhHHHHHHHHHHhCcccchHHHHHHHHHHH
Q 036068           39 LWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYC  118 (178)
Q Consensus        39 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~  118 (178)
                      +.+--+.-+...|+..+|.++-.+.+    .||...|.-=+.+++..+++++-+++-+..      .++--|...+..+.
T Consensus       686 Sl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAksk------ksPIGy~PFVe~c~  755 (829)
T KOG2280|consen  686 SLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSK------KSPIGYLPFVEACL  755 (829)
T ss_pred             cHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhcc------CCCCCchhHHHHHH
Confidence            34445556677788888877655543    588899999999999999998777663332      22445777888999


Q ss_pred             hcCChhhhc---cchhhHHHHHHHHHhcCChhHHHHHHHH
Q 036068          119 ICADVEKAQ---KDKFSWTTMIVGLAISGNGDKALDMFSQ  155 (178)
Q Consensus       119 ~~~~~~~a~---~~~~~~~~li~~~~~~~~~~~a~~~~~~  155 (178)
                      +.|+.++|.   |-..-+.-...+|.+.|++.+|-++--+
T Consensus       756 ~~~n~~EA~KYiprv~~l~ekv~ay~~~~~~~eAad~A~~  795 (829)
T KOG2280|consen  756 KQGNKDEAKKYIPRVGGLQEKVKAYLRVGDVKEAADLAAE  795 (829)
T ss_pred             hcccHHHHhhhhhccCChHHHHHHHHHhccHHHHHHHHHH
Confidence            999999998   3333444688999999999988875433

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=90.59  E-value=5.4  Score=29.33  Aligned_cols=110  Identities=14%  Similarity=0.154  Sum_probs=47.1

Q ss_pred             hhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHHhccccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHh---cCChh
Q 036068           48 LRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCI---CADVE  124 (178)
Q Consensus        48 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~---~~~~~  124 (178)
                      ...|+..+|..+|+......-. +...-..+..+|...|+.+.|..++..+-..--.........-|..+.+   .++..
T Consensus       145 ~~~e~~~~a~~~~~~al~~~~~-~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~~~  223 (304)
T COG3118         145 IEAEDFGEAAPLLKQALQAAPE-NSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPEIQ  223 (304)
T ss_pred             hhccchhhHHHHHHHHHHhCcc-cchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCCHH
Confidence            3445555555555554443211 2233344555555555555555555544322211111111121222222   22222


Q ss_pred             hhc------c-chhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 036068          125 KAQ------K-DKFSWTTMIVGLAISGNGDKALDMFSQMLR  158 (178)
Q Consensus       125 ~a~------~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~  158 (178)
                      ...      | |...--.+...+...|+.+.|++.+=.+.+
T Consensus       224 ~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~  264 (304)
T COG3118         224 DLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLR  264 (304)
T ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            222      2 334444455566666666666665544443

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=90.56  E-value=5.1  Score=28.96  Aligned_cols=88  Identities=19%  Similarity=0.039  Sum_probs=53.0

Q ss_pred             HHHHHHHhccccchhhHHHHHHHHHHhCcc--cchHHHHHHHHHHHhcCChhhhc--------------cchhhHHHHHH
Q 036068           75 IVSILTARANLRALDLGEWIKTYIDKNKVK--NDIFAGNALIDMYCICADVEKAQ--------------KDKFSWTTMIV  138 (178)
Q Consensus        75 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~--~~~~~~~~ll~~~~~~~~~~~a~--------------~~~~~~~~li~  138 (178)
                      |+.-+..+. .|++.+|++-|...++..+.  ..+..+-.|-.++...|++++|.              .-...+--|-.
T Consensus       145 Y~~A~~~~k-sgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~  223 (262)
T COG1729         145 YNAALDLYK-SGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGV  223 (262)
T ss_pred             HHHHHHHHH-cCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHH
Confidence            444444333 33466666666655554432  22444555556666666666654              12345556677


Q ss_pred             HHHhcCChhHHHHHHHHHHHcCCCCCh
Q 036068          139 GLAISGNGDKALDMFSQMLRASIKPDE  165 (178)
Q Consensus       139 ~~~~~~~~~~a~~~~~~m~~~g~~p~~  165 (178)
                      ...+.|+.++|-.+|++..+.  -|+.
T Consensus       224 ~~~~l~~~d~A~atl~qv~k~--YP~t  248 (262)
T COG1729         224 SLGRLGNTDEACATLQQVIKR--YPGT  248 (262)
T ss_pred             HHHHhcCHHHHHHHHHHHHHH--CCCC
Confidence            788899999999999998875  4544

>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK

Probab=90.51  E-value=3.5  Score=27.06  Aligned_cols=88  Identities=11%  Similarity=0.038  Sum_probs=52.0

Q ss_pred             HHHhcCChhHHHHHhccCC--CC---ChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHHhccccchh
Q 036068           15 RYINRGQVDIARQCFDQMP--ER---DYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANLRALD   89 (178)
Q Consensus        15 ~~~~~~~~~~a~~~~~~m~--~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~   89 (178)
                      .-...++.+++..+++.|+  .|   ...++...  .+...|+|++|.++|+++.+.+..   ..|..-+.++|-...-|
T Consensus        19 ~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~--l~i~rg~w~eA~rvlr~l~~~~~~---~p~~kAL~A~CL~al~D   93 (153)
T TIGR02561        19 YALRSADPYDAQAMLDALRVLRPNLKELDMFDGW--LLIARGNYDEAARILRELLSSAGA---PPYGKALLALCLNAKGD   93 (153)
T ss_pred             HHHhcCCHHHHHHHHHHHHHhCCCccccchhHHH--HHHHcCCHHHHHHHHHhhhccCCC---chHHHHHHHHHHHhcCC
Confidence            3345888999999998876  34   34444443  356788999999999999887522   24444444444333333


Q ss_pred             hHHHHH-HHHHHhCcccch
Q 036068           90 LGEWIK-TYIDKNKVKNDI  107 (178)
Q Consensus        90 ~a~~~~-~~m~~~~~~~~~  107 (178)
                      -.++.+ +.+...+-+++.
T Consensus        94 p~Wr~~A~~~le~~~~~~a  112 (153)
T TIGR02561        94 AEWHVHADEVLARDADADA  112 (153)
T ss_pred             hHHHHHHHHHHHhCCCHhH
Confidence            333333 334444444443

This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=90.31  E-value=5.2  Score=28.72  Aligned_cols=70  Identities=11%  Similarity=0.124  Sum_probs=45.3

Q ss_pred             HHHHHhcCChhHHHHHhccCCCC------ChhHHHHHHHHHhhcCChhHHHHHHHHhHhC-CCCCcHHHHHHHHHHhc
Q 036068           13 VSRYINRGQVDIARQCFDQMPER------DYVLWTAMIDGYLRVNRFREALTLFQEMQTS-NIMGDEFTIVSILTARA   83 (178)
Q Consensus        13 i~~~~~~~~~~~a~~~~~~m~~~------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-~~~~~~~~~~~ll~~~~   83 (178)
                      ...-.+.|++++|.+-|+.+.+.      ...+--.++-++-+.+++++|....++..+. +-.|| .-|...|.+++
T Consensus        41 g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n-~dY~~YlkgLs  117 (254)
T COG4105          41 GLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPN-ADYAYYLKGLS  117 (254)
T ss_pred             HHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCC-hhHHHHHHHHH
Confidence            33445688888888888888742      3344555667777888888888888886654 33333 33444444443

>PRK10564 maltose regulon periplasmic protein; Provisional

Probab=90.24  E-value=0.8  Score=33.55  Aligned_cols=46  Identities=17%  Similarity=0.270  Sum_probs=37.9

Q ss_pred             cchh-hHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhHHHHHHh
Q 036068          128 KDKF-SWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLS  173 (178)
Q Consensus       128 ~~~~-~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~  173 (178)
                      +|.. -||.-|...++.||+++|+.+++|.++.|+.---.||.--+.
T Consensus       254 ~dTe~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFik~V~  300 (303)
T PRK10564        254 NDTESYFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFISSVK  300 (303)
T ss_pred             chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHHHHhh
Confidence            4444 457999999999999999999999999998877777765544

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=90.22  E-value=0.57  Score=21.34  Aligned_cols=28  Identities=21%  Similarity=0.434  Sum_probs=22.6

Q ss_pred             HHHHHHHhcCChhHHHHHHHHHHHcCCCCC
Q 036068          135 TMIVGLAISGNGDKALDMFSQMLRASIKPD  164 (178)
Q Consensus       135 ~li~~~~~~~~~~~a~~~~~~m~~~g~~p~  164 (178)
                      .+...+.+.|++++|.+.|+++++.  .|+
T Consensus         5 ~~a~~~~~~g~~~~A~~~~~~~~~~--~P~   32 (33)
T PF13174_consen    5 RLARCYYKLGDYDEAIEYFQRLIKR--YPD   32 (33)
T ss_dssp             HHHHHHHHHCHHHHHHHHHHHHHHH--STT
T ss_pred             HHHHHHHHccCHHHHHHHHHHHHHH--CcC
Confidence            4556777899999999999999875  454

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=90.08  E-value=1.1  Score=20.53  Aligned_cols=28  Identities=21%  Similarity=0.380  Sum_probs=23.3

Q ss_pred             hHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 036068          132 SWTTMIVGLAISGNGDKALDMFSQMLRA  159 (178)
Q Consensus       132 ~~~~li~~~~~~~~~~~a~~~~~~m~~~  159 (178)
                      .|..+-..+.+.|++++|.+.|++..+.
T Consensus         3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l   30 (34)
T PF07719_consen    3 AWYYLGQAYYQLGNYEEAIEYFEKALEL   30 (34)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence            4667788899999999999999998864

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=90.01  E-value=3.7  Score=26.53  Aligned_cols=51  Identities=10%  Similarity=-0.156  Sum_probs=22.9

Q ss_pred             HhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHHhccccchhhHHHHHHHH
Q 036068           47 YLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYI   98 (178)
Q Consensus        47 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m   98 (178)
                      .+..|+.+.|++.|.+-...- +-....||.-.+++.-.|+.++|..=+++.
T Consensus        53 laE~g~Ld~AlE~F~qal~l~-P~raSayNNRAQa~RLq~~~e~ALdDLn~A  103 (175)
T KOG4555|consen   53 LAEAGDLDGALELFGQALCLA-PERASAYNNRAQALRLQGDDEEALDDLNKA  103 (175)
T ss_pred             HHhccchHHHHHHHHHHHHhc-ccchHhhccHHHHHHHcCChHHHHHHHHHH
Confidence            344445555555554443321 123344555555555455544444444333

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=89.90  E-value=6.3  Score=29.01  Aligned_cols=111  Identities=12%  Similarity=0.043  Sum_probs=80.5

Q ss_pred             HHHHhcCChhHHHHHhccCCC---CChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHHhccccchhh
Q 036068           14 SRYINRGQVDIARQCFDQMPE---RDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANLRALDL   90 (178)
Q Consensus        14 ~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~   90 (178)
                      ......|++.+|..+|+....   .+...--.+.+.|...|+.+.|..++..+...--.........-|..+.+.....+
T Consensus       142 ~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~  221 (304)
T COG3118         142 KELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPE  221 (304)
T ss_pred             hhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCC
Confidence            345678888888888887653   35666778889999999999999999998766433333343445666777777777


Q ss_pred             HHHHHHHHHHhCccc-chHHHHHHHHHHHhcCChhhhc
Q 036068           91 GEWIKTYIDKNKVKN-DIFAGNALIDMYCICADVEKAQ  127 (178)
Q Consensus        91 a~~~~~~m~~~~~~~-~~~~~~~ll~~~~~~~~~~~a~  127 (178)
                      ...+-+.+..   .| |...--.+-..+...|+.+.|.
T Consensus       222 ~~~l~~~~aa---dPdd~~aa~~lA~~~~~~g~~e~Al  256 (304)
T COG3118         222 IQDLQRRLAA---DPDDVEAALALADQLHLVGRNEAAL  256 (304)
T ss_pred             HHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHH
Confidence            7777666655   34 5666667777888899998875

>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human

Probab=89.76  E-value=0.78  Score=37.01  Aligned_cols=147  Identities=10%  Similarity=-0.013  Sum_probs=33.5

Q ss_pred             HHHHhccCCCCChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHHhccccchhhHHHHHHHHHHhCcc
Q 036068           25 ARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVK  104 (178)
Q Consensus        25 a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~  104 (178)
                      ..+++.+.+-.+...-.-++..|.+.|..+.|.++.+.+-.+-.  ...-|..-+.-+.+.++.+.+..+-..+.+....
T Consensus       393 i~~lL~~~p~~t~~~~~k~l~iC~~~~L~~~a~~I~~~~~~~~~--~~~~~g~AL~~~~ra~d~~~v~~i~~~ll~~~~~  470 (566)
T PF07575_consen  393 IEELLPRVPLDTNDDAEKLLEICAELGLEDVAREICKILGQRLL--KEGRYGEALSWFIRAGDYSLVTRIADRLLEEYCN  470 (566)
T ss_dssp             HHHHGGG----SHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHH--HHHHHHHHHHHHH---------------------
T ss_pred             HHHHHhhCCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH--HCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHhc
Confidence            33444444444555666777888888888888887777654422  2345667777778888887777776666654433


Q ss_pred             cchHHHHHHHHHHHhcCChhhhccchhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhHHHHHHhh
Q 036068          105 NDIFAGNALIDMYCICADVEKAQKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA  174 (178)
Q Consensus       105 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~a  174 (178)
                      .+......+++......-...-.--...|.-+-.. .+.|++.+|.+.+-.+.+.+..|...-...|.++
T Consensus       471 ~~~~~~~~ll~~i~~~~~~~~~L~fla~yreF~~~-~~~~~~~~Aa~~Lv~Ll~~~~~Pk~f~~~LL~d~  539 (566)
T PF07575_consen  471 NGEPLDDDLLDNIGSPMLLSQRLSFLAKYREFYEL-YDEGDFREAASLLVSLLKSPIAPKSFWPLLLCDA  539 (566)
T ss_dssp             ----------------------------------------------------------------------
T ss_pred             CCCcccHHHHHHhcchhhhhhhhHHHHHHHHHHHH-HhhhhHHHHHHHHHHHHCCCCCcHHHHHHHHHHH
Confidence            33333333333222222111111111222222222 2348888888888888888888877666665554

Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.

>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus

Probab=89.62  E-value=4  Score=26.39  Aligned_cols=108  Identities=10%  Similarity=0.009  Sum_probs=48.6

Q ss_pred             HHhcCChhHHHHHhccCCC-CChhHHHHHHHHHhhcCChhHHHHHHHHhHhC-CC----------------CCcHHHHHH
Q 036068           16 YINRGQVDIARQCFDQMPE-RDYVLWTAMIDGYLRVNRFREALTLFQEMQTS-NI----------------MGDEFTIVS   77 (178)
Q Consensus        16 ~~~~~~~~~a~~~~~~m~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-~~----------------~~~~~~~~~   77 (178)
                      +.-.|.+++..+++.+... .+..-+|=+|.-....-+=+-.++.++.+-+. .+                .-+..-...
T Consensus        12 ~ildG~V~qGveii~k~v~Ssni~E~NWvICNiiDaa~C~yvv~~LdsIGkiFDis~C~NlKrVi~C~~~~n~~se~vD~   91 (161)
T PF09205_consen   12 RILDGDVKQGVEIIEKTVNSSNIKEYNWVICNIIDAADCDYVVETLDSIGKIFDISKCGNLKRVIECYAKRNKLSEYVDL   91 (161)
T ss_dssp             HHHTT-HHHHHHHHHHHHHHS-HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS-GGG-S-THHHHHHHHHTT---HHHHH
T ss_pred             HHHhchHHHHHHHHHHHcCcCCccccceeeeecchhhchhHHHHHHHHHhhhcCchhhcchHHHHHHHHHhcchHHHHHH
Confidence            4457888888888887654 35555555554444433434444444443221 00                011223344


Q ss_pred             HHHHhccccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHhcCChh
Q 036068           78 ILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVE  124 (178)
Q Consensus        78 ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~  124 (178)
                      .+....+.|+-++-.+++..+.+.+ ++++...-.+-.+|.+.|+..
T Consensus        92 ALd~lv~~~kkDqLdki~~~l~kn~-~~~p~~L~kia~Ay~klg~~r  137 (161)
T PF09205_consen   92 ALDILVKQGKKDQLDKIYNELKKNE-EINPEFLVKIANAYKKLGNTR  137 (161)
T ss_dssp             HHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HH
T ss_pred             HHHHHHHhccHHHHHHHHHHHhhcc-CCCHHHHHHHHHHHHHhcchh
Confidence            4555566666666666666665533 444554444444444444443

Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=89.49  E-value=4.1  Score=26.33  Aligned_cols=89  Identities=11%  Similarity=-0.124  Sum_probs=50.5

Q ss_pred             HHHhcCChhHHHHHhccCCC---CChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHH---HHHHhccccch
Q 036068           15 RYINRGQVDIARQCFDQMPE---RDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVS---ILTARANLRAL   88 (178)
Q Consensus        15 ~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~---ll~~~~~~~~~   88 (178)
                      +.+..|+++.|++.|.+...   .....||.--.++.-.|+.++|++=+++-.+..-.-+...+.+   --..|...|+-
T Consensus        52 alaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~d  131 (175)
T KOG4555|consen   52 ALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGND  131 (175)
T ss_pred             HHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCch
Confidence            45566777777777765432   3666677777777777777777766666555322222222222   22234555666


Q ss_pred             hhHHHHHHHHHHhCc
Q 036068           89 DLGEWIKTYIDKNKV  103 (178)
Q Consensus        89 ~~a~~~~~~m~~~~~  103 (178)
                      +.|..=|+...+.|.
T Consensus       132 d~AR~DFe~AA~LGS  146 (175)
T KOG4555|consen  132 DAARADFEAAAQLGS  146 (175)
T ss_pred             HHHHHhHHHHHHhCC
Confidence            666666666655553

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=89.49  E-value=0.51  Score=22.29  Aligned_cols=24  Identities=17%  Similarity=0.401  Sum_probs=17.8

Q ss_pred             CcchhHHHHHHHHHHhcCChhHHH
Q 036068            3 NKDVISWTAIVSRYINRGQVDIAR   26 (178)
Q Consensus         3 ~p~~~~~~~li~~~~~~~~~~~a~   26 (178)
                      |-|+.+|+.+-..+...|++++|+
T Consensus        10 P~n~~a~~nla~~~~~~g~~~~A~   33 (34)
T PF13431_consen   10 PNNAEAYNNLANLYLNQGDYEEAI   33 (34)
T ss_pred             CCCHHHHHHHHHHHHHCcCHHhhc
Confidence            356667788888888888887775

>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models

Probab=89.35  E-value=0.9  Score=19.86  Aligned_cols=21  Identities=19%  Similarity=0.309  Sum_probs=11.5

Q ss_pred             HHHHHHHHhcCChhHHHHHhc
Q 036068           10 TAIVSRYINRGQVDIARQCFD   30 (178)
Q Consensus        10 ~~li~~~~~~~~~~~a~~~~~   30 (178)
                      ..+...+...|++++|..+++
T Consensus         5 ~~la~~~~~~G~~~eA~~~l~   25 (26)
T PF07721_consen    5 LALARALLAQGDPDEAERLLR   25 (26)
T ss_pred             HHHHHHHHHcCCHHHHHHHHh
Confidence            344555555666666655554

The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding

>TIGR03504 FimV_Cterm FimV C-terminal domain

Probab=88.95  E-value=1.1  Score=22.73  Aligned_cols=26  Identities=8%  Similarity=0.212  Sum_probs=22.7

Q ss_pred             HHHHHHHhcCChhHHHHHHHHHHHcC
Q 036068          135 TMIVGLAISGNGDKALDMFSQMLRAS  160 (178)
Q Consensus       135 ~li~~~~~~~~~~~a~~~~~~m~~~g  160 (178)
                      .|..+|...|+.+.|.+++++....|
T Consensus         4 dLA~ayie~Gd~e~Ar~lL~evl~~~   29 (44)
T TIGR03504         4 DLARAYIEMGDLEGARELLEEVIEEG   29 (44)
T ss_pred             HHHHHHHHcCChHHHHHHHHHHHHcC
Confidence            36789999999999999999999754

This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=88.58  E-value=1.5  Score=20.12  Aligned_cols=27  Identities=19%  Similarity=0.272  Sum_probs=23.6

Q ss_pred             hHHHHHHHHHhcCChhHHHHHHHHHHH
Q 036068          132 SWTTMIVGLAISGNGDKALDMFSQMLR  158 (178)
Q Consensus       132 ~~~~li~~~~~~~~~~~a~~~~~~m~~  158 (178)
                      +|..+-..|...|++++|...|++..+
T Consensus         3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~   29 (34)
T PF13181_consen    3 AYYNLGKIYEQLGDYEEALEYFEKALE   29 (34)
T ss_dssp             HHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            567778889999999999999999876

...

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=88.58  E-value=1.5  Score=20.17  Aligned_cols=27  Identities=19%  Similarity=0.447  Sum_probs=14.4

Q ss_pred             HHHHHHHHHhhcCChhHHHHHHHHhHh
Q 036068           39 LWTAMIDGYLRVNRFREALTLFQEMQT   65 (178)
Q Consensus        39 ~~~~li~~~~~~~~~~~a~~~~~~m~~   65 (178)
                      .|..+-..|...|++++|...|++..+
T Consensus         3 ~~~~~g~~~~~~~~~~~A~~~~~~al~   29 (34)
T PF00515_consen    3 AYYNLGNAYFQLGDYEEALEYYQRALE   29 (34)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence            444555555555666666655555544

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=88.38  E-value=7.5  Score=27.94  Aligned_cols=122  Identities=11%  Similarity=0.069  Sum_probs=86.7

Q ss_pred             hhHHHHHHHHHhhcCChhHHHHHHHHhHhCC--CCCcHHHHHHHHHHhccccchhhHHHHHHHHHHhCcccchHHHHHHH
Q 036068           37 YVLWTAMIDGYLRVNRFREALTLFQEMQTSN--IMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALI  114 (178)
Q Consensus        37 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~--~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll  114 (178)
                      ...|+.-+.. .+.|++++|.+.|+.+.++.  -+-...+-..++.++-+.+++++|....++..+..+.....-|-.-|
T Consensus        35 ~~LY~~g~~~-L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Yl  113 (254)
T COG4105          35 SELYNEGLTE-LQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYL  113 (254)
T ss_pred             HHHHHHHHHH-HhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHH
Confidence            3345554444 56789999999999998763  23345677788888999999999999999998876655455566667


Q ss_pred             HHHHhcCChhhhc--------------------c----------------chhhH-H-HHHHHHHhcCChhHHHHHHHHH
Q 036068          115 DMYCICADVEKAQ--------------------K----------------DKFSW-T-TMIVGLAISGNGDKALDMFSQM  156 (178)
Q Consensus       115 ~~~~~~~~~~~a~--------------------~----------------~~~~~-~-~li~~~~~~~~~~~a~~~~~~m  156 (178)
                      .+++..-..+...                    |                |.... + .+..-|.+.|.+..|..-+++|
T Consensus       114 kgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~nR~~~v  193 (254)
T COG4105         114 KGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAINRFEEV  193 (254)
T ss_pred             HHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHH
Confidence            7766555444443                    1                21111 2 3346678889999999999999


Q ss_pred             HHc
Q 036068          157 LRA  159 (178)
Q Consensus       157 ~~~  159 (178)
                      ++.
T Consensus       194 ~e~  196 (254)
T COG4105         194 LEN  196 (254)
T ss_pred             Hhc
Confidence            986

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=87.98  E-value=8.3  Score=29.57  Aligned_cols=92  Identities=8%  Similarity=0.058  Sum_probs=66.8

Q ss_pred             hHHHHHHHHHHhcCChhHHHHHhccCC---CCChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHH-HHHHHh
Q 036068            7 ISWTAIVSRYINRGQVDIARQCFDQMP---ERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIV-SILTAR   82 (178)
Q Consensus         7 ~~~~~li~~~~~~~~~~~a~~~~~~m~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~-~ll~~~   82 (178)
                      .++..+..++.+.+++..|+..-++..   .+|+-..-.--.++...|+++.|+..|+++.+..  |+-.... -++.+-
T Consensus       258 ~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~--P~Nka~~~el~~l~  335 (397)
T KOG0543|consen  258 ACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLE--PSNKAARAELIKLK  335 (397)
T ss_pred             HHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhC--CCcHHHHHHHHHHH
Confidence            467889999999999999998888654   4577666666788899999999999999998864  5544444 444444


Q ss_pred             ccccchh-hHHHHHHHHHH
Q 036068           83 ANLRALD-LGEWIKTYIDK  100 (178)
Q Consensus        83 ~~~~~~~-~a~~~~~~m~~  100 (178)
                      -+..+.. ...++|..|-.
T Consensus       336 ~k~~~~~~kekk~y~~mF~  354 (397)
T KOG0543|consen  336 QKIREYEEKEKKMYANMFA  354 (397)
T ss_pred             HHHHHHHHHHHHHHHHHhh
Confidence            4444433 34677777754

>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length

Probab=87.79  E-value=5.6  Score=31.17  Aligned_cols=111  Identities=10%  Similarity=0.120  Sum_probs=65.1

Q ss_pred             HHHHHHHHhcCChhHHHHHhccCCCC-ChhHHHHHHHHHh--hcCChhHHHHHHHHhHhC--C------------CCCcH
Q 036068           10 TAIVSRYINRGQVDIARQCFDQMPER-DYVLWTAMIDGYL--RVNRFREALTLFQEMQTS--N------------IMGDE   72 (178)
Q Consensus        10 ~~li~~~~~~~~~~~a~~~~~~m~~~-~~~~~~~li~~~~--~~~~~~~a~~~~~~m~~~--~------------~~~~~   72 (178)
                      +.+|++|. ..+++.+...+.+.++. ....|-.|..++.  +.+++.+|.+.+..=.++  +            ..+|-
T Consensus        50 grilnAff-l~nld~Me~~l~~l~~~~~~s~~l~LF~~L~~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df  128 (549)
T PF07079_consen   50 GRILNAFF-LNNLDLMEKQLMELRQQFGKSAYLPLFKALVAYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDF  128 (549)
T ss_pred             hHHHHHHH-HhhHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHH
Confidence            45666666 34566666666555532 2333444444332  556777777666554332  1            12222


Q ss_pred             HHHHHHHHHhccccchhhHHHHHHHHHH----hCcccchHHHHHHHHHHHhcC
Q 036068           73 FTIVSILTARANLRALDLGEWIKTYIDK----NKVKNDIFAGNALIDMYCICA  121 (178)
Q Consensus        73 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~----~~~~~~~~~~~~ll~~~~~~~  121 (178)
                      .-=++.+.++...|++.++..+++++..    +....+..+|+.++-.+++.-
T Consensus       129 ~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~~vlmlsrSY  181 (549)
T PF07079_consen  129 FLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDRAVLMLSRSY  181 (549)
T ss_pred             HHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHhHHH
Confidence            3334567778888888888888877664    445578888888777666643

Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.

>TIGR02508 type_III_yscG type III secretion protein, YscG family

Probab=87.48  E-value=4.8  Score=24.61  Aligned_cols=75  Identities=11%  Similarity=-0.001  Sum_probs=41.7

Q ss_pred             hhHHHHHhccCCCC-ChhHHHHH--HHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHHhccccchhhHHHHHHHH
Q 036068           22 VDIARQCFDQMPER-DYVLWTAM--IDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYI   98 (178)
Q Consensus        22 ~~~a~~~~~~m~~~-~~~~~~~l--i~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m   98 (178)
                      .++|..+-+.+... +..-.-.|  +.++.+.|++++|..+.+.+    ..||...|.++-  -.+.|--+....-+..|
T Consensus        21 HqEA~tIAdwL~~~~~~~E~v~lIRlsSLmNrG~Yq~Al~l~~~~----~~pdlepw~ALc--e~rlGl~s~l~~rl~rl   94 (115)
T TIGR02508        21 HQEANTIADWLHLKGESEEAVQLIRLSSLMNRGDYQSALQLGNKL----CYPDLEPWLALC--EWRLGLGSALESRLNRL   94 (115)
T ss_pred             HHHHHHHHHHHhcCCchHHHHHHHHHHHHHccchHHHHHHhcCCC----CCchHHHHHHHH--HHhhccHHHHHHHHHHH
Confidence            45566665555432 11222223  34566777777777666655    357776664443  34556666666666666


Q ss_pred             HHhC
Q 036068           99 DKNK  102 (178)
Q Consensus        99 ~~~~  102 (178)
                      ..+|
T Consensus        95 a~sg   98 (115)
T TIGR02508        95 AASG   98 (115)
T ss_pred             HhCC
Confidence            6665

YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.

>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised

Probab=87.25  E-value=2.3  Score=21.94  Aligned_cols=30  Identities=0%  Similarity=-0.140  Sum_probs=13.8

Q ss_pred             ccchhhHHHHHHHHHHhCcccchHHHHHHH
Q 036068           85 LRALDLGEWIKTYIDKNKVKNDIFAGNALI  114 (178)
Q Consensus        85 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll  114 (178)
                      .|-.+++..+++.|.+.|+..+...+..++
T Consensus        15 ~GlI~~~~~~l~~l~~~g~~is~~l~~~~L   44 (48)
T PF11848_consen   15 RGLISEVKPLLDRLQQAGFRISPKLIEEIL   44 (48)
T ss_pred             cCChhhHHHHHHHHHHcCcccCHHHHHHHH
Confidence            334444444445554444444444444443

This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.

>COG3898 Uncharacterized membrane-bound protein [Function unknown]

Probab=87.18  E-value=12  Score=28.94  Aligned_cols=141  Identities=15%  Similarity=0.091  Sum_probs=74.9

Q ss_pred             hcCChhHHHHHhccCCC-CChhH--HHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHHhccccchhhHHHH
Q 036068           18 NRGQVDIARQCFDQMPE-RDYVL--WTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANLRALDLGEWI   94 (178)
Q Consensus        18 ~~~~~~~a~~~~~~m~~-~~~~~--~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~   94 (178)
                      -.|++++|.+-|+-|.. |....  ...|.-.--+.|+.+.|.+.-.+-.+.. +--.+.+...+...|..|+++.|.++
T Consensus       132 ~eG~~~~Ar~kfeAMl~dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~AlkL  210 (531)
T COG3898         132 LEGDYEDARKKFEAMLDDPETRLLGLRGLYLEAQRLGAREAARHYAERAAEKA-PQLPWAARATLEARCAAGDWDGALKL  210 (531)
T ss_pred             hcCchHHHHHHHHHHhcChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHHHHHH
Confidence            36777777777777764 21111  1122222234566666655544443332 11246677888888888888888888


Q ss_pred             HHHHHHhC-cccchHHHHHHHHHHHhcCC-----hhhhc----------cchhhHHH-HHHHHHhcCChhHHHHHHHHHH
Q 036068           95 KTYIDKNK-VKNDIFAGNALIDMYCICAD-----VEKAQ----------KDKFSWTT-MIVGLAISGNGDKALDMFSQML  157 (178)
Q Consensus        95 ~~~m~~~~-~~~~~~~~~~ll~~~~~~~~-----~~~a~----------~~~~~~~~-li~~~~~~~~~~~a~~~~~~m~  157 (178)
                      ++.-.+.. ++++..--.-.+-.-.+...     ...|.          ||...--. -...+.+.|+..++-.+++.+=
T Consensus       211 vd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aW  290 (531)
T COG3898         211 VDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANKLAPDLVPAAVVAARALFRDGNLRKGSKILETAW  290 (531)
T ss_pred             HHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCccchHHHHHHHHHHhccchhhhhhHHHHHH
Confidence            87655433 34443322222221222111     11111          44333222 2367778888888888888776


Q ss_pred             Hc
Q 036068          158 RA  159 (178)
Q Consensus       158 ~~  159 (178)
                      +.
T Consensus       291 K~  292 (531)
T COG3898         291 KA  292 (531)
T ss_pred             hc
Confidence            65

>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF

Probab=86.99  E-value=0.92  Score=29.08  Aligned_cols=31  Identities=16%  Similarity=0.176  Sum_probs=22.2

Q ss_pred             cCChhHHHHHHHHhHhCCCCCcHHHHHHHHHHh
Q 036068           50 VNRFREALTLFQEMQTSNIMGDEFTIVSILTAR   82 (178)
Q Consensus        50 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~   82 (178)
                      .|.-..|-.+|.+|+++|-+||  .|+.|+..+
T Consensus       108 ygsk~DaY~VF~kML~~G~pPd--dW~~Ll~~a  138 (140)
T PF11663_consen  108 YGSKTDAYAVFRKMLERGNPPD--DWDALLKEA  138 (140)
T ss_pred             hccCCcHHHHHHHHHhCCCCCc--cHHHHHHHh
Confidence            3566778888888888888887  455666543

The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].

>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases

Probab=86.85  E-value=11  Score=28.06  Aligned_cols=146  Identities=13%  Similarity=0.169  Sum_probs=82.6

Q ss_pred             HHHHHHhcCChhHHHHHhccCCC--CChhHHHHHHHHHhhcCChhHHHHHHHHhHhC--------CCCCcHHHHHHHHHH
Q 036068           12 IVSRYINRGQVDIARQCFDQMPE--RDYVLWTAMIDGYLRVNRFREALTLFQEMQTS--------NIMGDEFTIVSILTA   81 (178)
Q Consensus        12 li~~~~~~~~~~~a~~~~~~m~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~--------~~~~~~~~~~~ll~~   81 (178)
                      ..++.-+.|+|+...+.......  ++...|..+...  ..++.+++....++....        ........|..++..
T Consensus         4 ~~eaaWrl~~Wd~l~~~~~~~~~~~~~~~~~~al~~l--~~~~~~~~~~~i~~~r~~~~~~l~~~~~~s~~~~y~~l~~l   81 (352)
T PF02259_consen    4 AAEAAWRLGDWDLLEEYLSQSNEDSPEYSFYRALLAL--RQGDYDEAKKYIEKARQLLLDELSALSSESYQRAYPSLVKL   81 (352)
T ss_pred             HHHHHHhcCChhhHHHHHhhccCCChhHHHHHHHHHH--hCccHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence            35677788999998888887775  344555555544  778888888877776442        111122233333222


Q ss_pred             hccccchhhHHHHH--------------HHHHH--hCcccchHHHHHHHHHHHhcCC-hhhhccchhhHHHHHHHHHhcC
Q 036068           82 RANLRALDLGEWIK--------------TYIDK--NKVKNDIFAGNALIDMYCICAD-VEKAQKDKFSWTTMIVGLAISG  144 (178)
Q Consensus        82 ~~~~~~~~~a~~~~--------------~~m~~--~~~~~~~~~~~~ll~~~~~~~~-~~~a~~~~~~~~~li~~~~~~~  144 (178)
                      . ...+++++.++.              +...+  ....++..+|..++..-.-.-. .........+|..+...+.+.|
T Consensus        82 q-~L~Elee~~~~~~~~~~~~~~~~~l~~~W~~Rl~~~~~~~~~~~~il~~R~~~l~~~~~~~~~~~~~l~~a~~aRk~g  160 (352)
T PF02259_consen   82 Q-QLVELEEIIELKSNLSQNPQDLKSLLKRWRSRLPNMQDDFSVWEPILSLRRLVLSLILLPEELAETWLKFAKLARKAG  160 (352)
T ss_pred             h-HHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHCC
Confidence            1 112222222222              11111  1235566677766654322211 1111134567888888899999


Q ss_pred             ChhHHHHHHHHHHHcC
Q 036068          145 NGDKALDMFSQMLRAS  160 (178)
Q Consensus       145 ~~~~a~~~~~~m~~~g  160 (178)
                      .++.|...+.++...+
T Consensus       161 ~~~~A~~~l~~~~~~~  176 (352)
T PF02259_consen  161 NFQLALSALNRLFQLN  176 (352)
T ss_pred             CcHHHHHHHHHHhccC
Confidence            9999999888887643

Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding

>PF13170 DUF4003: Protein of unknown function (DUF4003)

Probab=86.83  E-value=2.8  Score=30.97  Aligned_cols=99  Identities=12%  Similarity=0.129  Sum_probs=62.2

Q ss_pred             hhHHHHHhccCCC-------CChhHHHHHHHHHhhcCC----hhHHHHHHHHhHhCCCCCcH--HHHHHHHHHhccccc-
Q 036068           22 VDIARQCFDQMPE-------RDYVLWTAMIDGYLRVNR----FREALTLFQEMQTSNIMGDE--FTIVSILTARANLRA-   87 (178)
Q Consensus        22 ~~~a~~~~~~m~~-------~~~~~~~~li~~~~~~~~----~~~a~~~~~~m~~~~~~~~~--~~~~~ll~~~~~~~~-   87 (178)
                      ...|.++|+.|++       ++-.++..|+..  ..++    .+.+..+|+.+.+.|...+-  .....++..+..... 
T Consensus       119 ~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~  196 (297)
T PF13170_consen  119 IQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDVEELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQE  196 (297)
T ss_pred             HHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchH
Confidence            4568999999985       366677777665  3333    46678888888887765442  333333333333322 


Q ss_pred             -hhhHHHHHHHHHHhCcccchHHHHHHHHHHHhcCCh
Q 036068           88 -LDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADV  123 (178)
Q Consensus        88 -~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~  123 (178)
                       ..++.++++.+.+.|+++....|..+ ..++-.++.
T Consensus       197 ~v~r~~~l~~~l~~~~~kik~~~yp~l-GlLall~~~  232 (297)
T PF13170_consen  197 KVARVIELYNALKKNGVKIKYMHYPTL-GLLALLEDP  232 (297)
T ss_pred             HHHHHHHHHHHHHHcCCccccccccHH-HHHHhcCCc
Confidence             34788899999999998877665544 333333333

>KOG4570 consensus Uncharacterized conserved protein [Function unknown]

Probab=86.49  E-value=12  Score=28.11  Aligned_cols=90  Identities=11%  Similarity=0.061  Sum_probs=51.9

Q ss_pred             ChhHHHHHHHHHhhcCChhHHHHHHHHhHhC---CCCCcHHHHHHHHHHhccccchhhHHHHHHHHHHhCcccchHHHHH
Q 036068           36 DYVLWTAMIDGYLRVNRFREALTLFQEMQTS---NIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNA  112 (178)
Q Consensus        36 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~---~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~  112 (178)
                      ...+...++..-....+++.+...+=++...   ...|+ .+..++++.|.+. +++++..++..=++.|+-||.++++.
T Consensus        63 s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~-~~~~~~irlllky-~pq~~i~~l~npIqYGiF~dqf~~c~  140 (418)
T KOG4570|consen   63 SSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRN-WTIHTWIRLLLKY-DPQKAIYTLVNPIQYGIFPDQFTFCL  140 (418)
T ss_pred             ceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhcc-ccHHHHHHHHHcc-ChHHHHHHHhCcchhccccchhhHHH
Confidence            4444555555555556666666665555432   11222 2223344444332 55566666666667777777777777


Q ss_pred             HHHHHHhcCChhhhc
Q 036068          113 LIDMYCICADVEKAQ  127 (178)
Q Consensus       113 ll~~~~~~~~~~~a~  127 (178)
                      +|+.+.+.+++.+|.
T Consensus       141 l~D~flk~~n~~~aa  155 (418)
T KOG4570|consen  141 LMDSFLKKENYKDAA  155 (418)
T ss_pred             HHHHHHhcccHHHHH
Confidence            777777777777663

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=86.39  E-value=17  Score=30.39  Aligned_cols=21  Identities=19%  Similarity=0.169  Sum_probs=10.7

Q ss_pred             chHHHHHHHHHHHhcCChhhh
Q 036068          106 DIFAGNALIDMYCICADVEKA  126 (178)
Q Consensus       106 ~~~~~~~ll~~~~~~~~~~~a  126 (178)
                      +......+-+.+.+.|.-++|
T Consensus       851 ~s~llp~~a~mf~svGMC~qA  871 (1189)
T KOG2041|consen  851 DSELLPVMADMFTSVGMCDQA  871 (1189)
T ss_pred             ccchHHHHHHHHHhhchHHHH
Confidence            444445555555555555544

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=86.32  E-value=17  Score=29.79  Aligned_cols=92  Identities=16%  Similarity=0.157  Sum_probs=56.8

Q ss_pred             hcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHHhccccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHhcCChhhhc-
Q 036068           49 RVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ-  127 (178)
Q Consensus        49 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~-  127 (178)
                      +.|+.+.|.++..+.      -+..-|..|-++..+.+++..|.+.+.....         |..|+-.+...|+.+... 
T Consensus       649 ~lgrl~iA~~la~e~------~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~  713 (794)
T KOG0276|consen  649 KLGRLDIAFDLAVEA------NSEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAV  713 (794)
T ss_pred             hcCcHHHHHHHHHhh------cchHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHH
Confidence            445566665554442      2456788888888888888888888765443         334444555555544222 


Q ss_pred             -----cchhhHHHHHHHHHhcCChhHHHHHHHH
Q 036068          128 -----KDKFSWTTMIVGLAISGNGDKALDMFSQ  155 (178)
Q Consensus       128 -----~~~~~~~~li~~~~~~~~~~~a~~~~~~  155 (178)
                           ...-..|..+-+|...|+++++++++.+
T Consensus       714 la~~~~~~g~~N~AF~~~~l~g~~~~C~~lLi~  746 (794)
T KOG0276|consen  714 LASLAKKQGKNNLAFLAYFLSGDYEECLELLIS  746 (794)
T ss_pred             HHHHHHhhcccchHHHHHHHcCCHHHHHHHHHh
Confidence                 2223345566677778888888877654

>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]

Probab=86.05  E-value=2.9  Score=29.44  Aligned_cols=81  Identities=10%  Similarity=-0.081  Sum_probs=59.0

Q ss_pred             HHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHHhccccchhhHHHHHHHHHHhC--cccchHHHHHHHHH
Q 036068           39 LWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNK--VKNDIFAGNALIDM  116 (178)
Q Consensus        39 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~--~~~~~~~~~~ll~~  116 (178)
                      |.+.-++.+.+.+..++++...++-.+.+ +-|..+-..+++.+|-.|++++|..=++......  ..+...+|..+|.+
T Consensus         3 Tl~~t~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~   81 (273)
T COG4455           3 TLRDTISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC   81 (273)
T ss_pred             chHHHHHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence            34556677888889999998888766654 3456666778999999999999987777665443  34556778888876


Q ss_pred             HHhc
Q 036068          117 YCIC  120 (178)
Q Consensus       117 ~~~~  120 (178)
                      -...
T Consensus        82 ea~R   85 (273)
T COG4455          82 EAAR   85 (273)
T ss_pred             HHHH
Confidence            4443

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=86.04  E-value=14  Score=28.40  Aligned_cols=81  Identities=9%  Similarity=0.013  Sum_probs=57.4

Q ss_pred             HHHHHHHHHhhcCChhHHHHHHHHhHhCC---CCCcHHHHHHHHHHhcc---ccchhhHHHHHHHHHHhCcccchHHHHH
Q 036068           39 LWTAMIDGYLRVNRFREALTLFQEMQTSN---IMGDEFTIVSILTARAN---LRALDLGEWIKTYIDKNKVKNDIFAGNA  112 (178)
Q Consensus        39 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~---~~~~~~~~~~ll~~~~~---~~~~~~a~~~~~~m~~~~~~~~~~~~~~  112 (178)
                      +...++-+|....+++...++.+.+...-   +.-....---...++.+   .|+-++|.+++..+......+++.++..
T Consensus       143 iv~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL  222 (374)
T PF13281_consen  143 IVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGL  222 (374)
T ss_pred             HHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHH
Confidence            33355557899999999999999987751   11122222344556666   8999999999998666666778888887


Q ss_pred             HHHHHHh
Q 036068          113 LIDMYCI  119 (178)
Q Consensus       113 ll~~~~~  119 (178)
                      +-..|-.
T Consensus       223 ~GRIyKD  229 (374)
T PF13281_consen  223 LGRIYKD  229 (374)
T ss_pred             HHHHHHH
Confidence            7776654

>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1

Probab=85.45  E-value=2.8  Score=25.87  Aligned_cols=30  Identities=13%  Similarity=0.203  Sum_probs=26.3

Q ss_pred             chhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 036068          129 DKFSWTTMIVGLAISGNGDKALDMFSQMLR  158 (178)
Q Consensus       129 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~  158 (178)
                      ...-|..|+.-|...|.+++|++++.++.+
T Consensus        38 ~~~~~~eL~~lY~~kg~h~~AL~ll~~l~~   67 (108)
T PF10366_consen   38 EHGKYQELVDLYQGKGLHRKALELLKKLAD   67 (108)
T ss_pred             HcCCHHHHHHHHHccCccHHHHHHHHHHhc
Confidence            344577899999999999999999999987

Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.

>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1

Probab=85.11  E-value=8.4  Score=25.85  Aligned_cols=65  Identities=15%  Similarity=0.052  Sum_probs=51.1

Q ss_pred             HHHHHHHHHhCcccchHHHHHHHHHHHhcCChhhhc------------------------------------cchh-hHH
Q 036068           92 EWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ------------------------------------KDKF-SWT  134 (178)
Q Consensus        92 ~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~------------------------------------~~~~-~~~  134 (178)
                      .++++.+.+.++.|....+..+++.+.+.|++....                                    .-.. .+.
T Consensus        14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~qllq~~Vi~DSk~lA~~LLs~~~~~~~~~Ql~lDMLkRL~~~~~   93 (167)
T PF07035_consen   14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQLLQYHVIPDSKPLACQLLSLGNQYPPAYQLGLDMLKRLGTAYE   93 (167)
T ss_pred             HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHhhcccCCcHHHHHHHHHhHccChHHHHHHHHHHHHhhhhHH
Confidence            456677778899999999999999999999988765                                    1223 566


Q ss_pred             HHHHHHHhcCChhHHHHHHHHH
Q 036068          135 TMIVGLAISGNGDKALDMFSQM  156 (178)
Q Consensus       135 ~li~~~~~~~~~~~a~~~~~~m  156 (178)
                      .++..+...|++-+|+++.++.
T Consensus        94 ~iievLL~~g~vl~ALr~ar~~  115 (167)
T PF07035_consen   94 EIIEVLLSKGQVLEALRYARQY  115 (167)
T ss_pred             HHHHHHHhCCCHHHHHHHHHHc
Confidence            7777788888888888888774

>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B

Probab=84.49  E-value=3.1  Score=22.74  Aligned_cols=46  Identities=11%  Similarity=0.117  Sum_probs=28.3

Q ss_pred             hhHHHHHHHHhHhCCCCCcHHHHHHHHHHhccccchhhHHHHHHHHHH
Q 036068           53 FREALTLFQEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDK  100 (178)
Q Consensus        53 ~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~  100 (178)
                      ++...++++.+...  +.|-.--..+|.++...|++++|.++++.+.+
T Consensus         6 ~~~~~~~~~~lR~~--RHD~~NhLqvI~gllqlg~~~~a~eYi~~~~~   51 (62)
T PF14689_consen    6 LEELEELIDSLRAQ--RHDFLNHLQVIYGLLQLGKYEEAKEYIKELSK   51 (62)
T ss_dssp             HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH--hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            34445555555433  34555666777778888888888777776654

>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]

Probab=84.43  E-value=7.2  Score=23.86  Aligned_cols=22  Identities=18%  Similarity=0.413  Sum_probs=11.6

Q ss_pred             HHHHHHhhcCChhHHHHHHHHh
Q 036068           42 AMIDGYLRVNRFREALTLFQEM   63 (178)
Q Consensus        42 ~li~~~~~~~~~~~a~~~~~~m   63 (178)
                      .++..|...|+.++|...++++
T Consensus         7 ~~l~ey~~~~d~~ea~~~l~el   28 (113)
T PF02847_consen    7 SILMEYFSSGDVDEAVECLKEL   28 (113)
T ss_dssp             HHHHHHHHHT-HHHHHHHHHHT
T ss_pred             HHHHHHhcCCCHHHHHHHHHHh
Confidence            3444555556666666655554

It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=84.01  E-value=18  Score=29.97  Aligned_cols=75  Identities=13%  Similarity=0.027  Sum_probs=51.0

Q ss_pred             HHHHHHHHHhccccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHhcCChhhhc------c--chhhHHHHHHHHHhcC
Q 036068           73 FTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ------K--DKFSWTTMIVGLAISG  144 (178)
Q Consensus        73 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~------~--~~~~~~~li~~~~~~~  144 (178)
                      .+...+..-+.+...+..|-++|..|-+         ...+++.+...+++.+|.      |  -...|-.-.+-++..+
T Consensus       748 e~l~~~a~ylk~l~~~gLAaeIF~k~gD---------~ksiVqlHve~~~W~eAFalAe~hPe~~~dVy~pyaqwLAE~D  818 (1081)
T KOG1538|consen  748 EPLLLCATYLKKLDSPGLAAEIFLKMGD---------LKSLVQLHVETQRWDEAFALAEKHPEFKDDVYMPYAQWLAEND  818 (1081)
T ss_pred             hHHHHHHHHHhhccccchHHHHHHHhcc---------HHHHhhheeecccchHhHhhhhhCccccccccchHHHHhhhhh
Confidence            3444444455666667777777766543         235677888889999887      1  1223445567778899


Q ss_pred             ChhHHHHHHHHH
Q 036068          145 NGDKALDMFSQM  156 (178)
Q Consensus       145 ~~~~a~~~~~~m  156 (178)
                      +|++|.+.|.+.
T Consensus       819 rFeEAqkAfhkA  830 (1081)
T KOG1538|consen  819 RFEEAQKAFHKA  830 (1081)
T ss_pred             hHHHHHHHHHHh
Confidence            999999999775

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=83.44  E-value=14  Score=29.39  Aligned_cols=80  Identities=15%  Similarity=0.123  Sum_probs=54.0

Q ss_pred             HHHHHhhcCChhHHHHHHHHhHhCC-CCCcHHHHHHHHHHhccccchhhHHHHHHHHHHhCc-ccchHHHHHHHHHHHhc
Q 036068           43 MIDGYLRVNRFREALTLFQEMQTSN-IMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKV-KNDIFAGNALIDMYCIC  120 (178)
Q Consensus        43 li~~~~~~~~~~~a~~~~~~m~~~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~-~~~~~~~~~ll~~~~~~  120 (178)
                      |-...-+.|+.++|.+.|++|.+.. ..-.......|+.++...+.+.++..++..-.+... +.-...|+..+-.+-..
T Consensus       265 LAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALLkaRav  344 (539)
T PF04184_consen  265 LAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAALLKARAV  344 (539)
T ss_pred             HHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHHHHHhh
Confidence            4445557799999999999987653 222344677889999999999999998877654432 23345577666544444


Q ss_pred             CC
Q 036068          121 AD  122 (178)
Q Consensus       121 ~~  122 (178)
                      ++
T Consensus       345 ~d  346 (539)
T PF04184_consen  345 GD  346 (539)
T ss_pred             cc
Confidence            43

The molecular function of this protein is uncertain.

>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]

Probab=83.41  E-value=28  Score=29.93  Aligned_cols=170  Identities=14%  Similarity=0.098  Sum_probs=96.7

Q ss_pred             HHHHHHHHHHhcCChhHHHHHhccCCCCC-------hhHHHHHHHHHhhcCCh--hHHHHHHHHhHhCCCCCcHHHHHH-
Q 036068            8 SWTAIVSRYINRGQVDIARQCFDQMPERD-------YVLWTAMIDGYLRVNRF--REALTLFQEMQTSNIMGDEFTIVS-   77 (178)
Q Consensus         8 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~-------~~~~~~li~~~~~~~~~--~~a~~~~~~m~~~~~~~~~~~~~~-   77 (178)
                      -|..|+..|...|+.++|+++|.+..+.+       ..-+.-+++.+-+.+..  +..++.-+=..+..-.-....++. 
T Consensus       506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~~p~~gi~Ift~~  585 (877)
T KOG2063|consen  506 KYRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLNKNPEAGIQIFTSE  585 (877)
T ss_pred             cHHHHHHHHHhccchHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhccCchhheeeeecc
Confidence            47889999999999999999999886522       11222344444444443  333332222222211101111111 


Q ss_pred             -----------HHHHhccccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHhcCC----h----hhhc-----------
Q 036068           78 -----------ILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICAD----V----EKAQ-----------  127 (178)
Q Consensus        78 -----------ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~----~----~~a~-----------  127 (178)
                                 -+-.|......+-+..+++.+....-.++....+.++..|++.=+    .    +++.           
T Consensus       586 ~~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e~v~~~~~~~~kg~e~~E~~~rekl~~~  665 (877)
T KOG2063|consen  586 DKQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLEKVLEQASTDGKGEEAPETTVREKLLDF  665 (877)
T ss_pred             ChhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHHHHhhccCchhccccchhhhHHHHHHHH
Confidence                       122344555667788888888877667778888888888876433    0    0110           


Q ss_pred             ----------------cchhhHHHHHHHHHhcCChhHHHHHHHHHHH------------c-CCCCChhHHHHHHhhhhc
Q 036068          128 ----------------KDKFSWTTMIVGLAISGNGDKALDMFSQMLR------------A-SIKPDEVAYVGVLSACTH  177 (178)
Q Consensus       128 ----------------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~------------~-g~~p~~~t~~~li~a~~~  177 (178)
                                      +...-|.-.-.-+.+.|+.++|+.++-..+.            . .-.++...|.++++.|.+
T Consensus       666 l~~s~~Y~p~~~L~~~~~~~l~ee~aill~rl~khe~aL~Iyv~~L~d~~~A~~Yc~~~y~~~~~~~~~y~~lL~~~l~  744 (877)
T KOG2063|consen  666 LESSDLYDPQLLLERLNGDELYEERAILLGRLGKHEEALHIYVHELDDIDAAESYCLPQYESDKTNKEIYLTLLRIYLN  744 (877)
T ss_pred             hhhhcccCcchhhhhccchhHHHHHHHHHhhhhhHHHHHHHHHHHhcchhHHHHHHHHhccCCCcccHHHHHHHHHHhc
Confidence                            1222222222223388899999987766543            1 234577888888887754

>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B

Probab=83.38  E-value=2.7  Score=22.97  Aligned_cols=25  Identities=20%  Similarity=0.333  Sum_probs=20.8

Q ss_pred             HHHHHHHHhcCChhHHHHHHHHHHH
Q 036068          134 TTMIVGLAISGNGDKALDMFSQMLR  158 (178)
Q Consensus       134 ~~li~~~~~~~~~~~a~~~~~~m~~  158 (178)
                      -.+|.++...|++++|.++++++.+
T Consensus        27 LqvI~gllqlg~~~~a~eYi~~~~~   51 (62)
T PF14689_consen   27 LQVIYGLLQLGKYEEAKEYIKELSK   51 (62)
T ss_dssp             HHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            3578999999999999999998875

>PRK10564 maltose regulon periplasmic protein; Provisional

Probab=83.30  E-value=3.3  Score=30.48  Aligned_cols=41  Identities=17%  Similarity=0.204  Sum_probs=30.5

Q ss_pred             hhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHH
Q 036068           37 YVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVS   77 (178)
Q Consensus        37 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~   77 (178)
                      ..-|+.-|..-.+.||+++|+.++++-++.|+.--..+|-.
T Consensus       257 e~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFik  297 (303)
T PRK10564        257 ESYFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFIS  297 (303)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHHH
Confidence            33477888888888888888888888888887644445433

>PRK11639 zinc uptake transcriptional repressor; Provisional

Probab=83.28  E-value=11  Score=25.22  Aligned_cols=66  Identities=8%  Similarity=-0.084  Sum_probs=49.9

Q ss_pred             HHhHhCCCCCcHHHHHHHHHHhccccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHhcCChhhhc
Q 036068           61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ  127 (178)
Q Consensus        61 ~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~  127 (178)
                      +.+++.|++++..= ..++..+....+.-.|.++++.+.+.+...+..|..--|..+...|-+....
T Consensus        15 ~~L~~~GlR~T~qR-~~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Glv~~~~   80 (169)
T PRK11639         15 KLCAQRNVRLTPQR-LEVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGFVHKVE   80 (169)
T ss_pred             HHHHHcCCCCCHHH-HHHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCCEEEEe
Confidence            33556787766544 3556666556667789999999999998888888888888899888887764

>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]

Probab=82.31  E-value=9  Score=23.42  Aligned_cols=62  Identities=15%  Similarity=0.259  Sum_probs=36.4

Q ss_pred             HHHHHHHHhcCChhHHHHHhccCCCCC--hhHHHHHHHHHhhc--CChhHHHHHHHHhHhCCCCCc
Q 036068           10 TAIVSRYINRGQVDIARQCFDQMPERD--YVLWTAMIDGYLRV--NRFREALTLFQEMQTSNIMGD   71 (178)
Q Consensus        10 ~~li~~~~~~~~~~~a~~~~~~m~~~~--~~~~~~li~~~~~~--~~~~~a~~~~~~m~~~~~~~~   71 (178)
                      ..+|..|...|+.++|..-++++..|+  ......++......  ..-+.+..++.++...+..+.
T Consensus         6 ~~~l~ey~~~~d~~ea~~~l~el~~~~~~~~vv~~~l~~~le~~~~~r~~~~~Ll~~L~~~~~~~~   71 (113)
T PF02847_consen    6 FSILMEYFSSGDVDEAVECLKELKLPSQHHEVVKVILECALEEKKSYREYYSKLLSHLCKRKLISK   71 (113)
T ss_dssp             HHHHHHHHHHT-HHHHHHHHHHTT-GGGHHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHHTTSS-H
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHhCCCccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhcCCCCH
Confidence            456778888999999999999987761  11222333333332  223445666677776665443

It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....

>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins

Probab=81.91  E-value=18  Score=26.59  Aligned_cols=83  Identities=7%  Similarity=-0.078  Sum_probs=52.8

Q ss_pred             HHHHHhcCChhHHHH----HhccCCCCChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHHh-----c
Q 036068           13 VSRYINRGQVDIARQ----CFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTAR-----A   83 (178)
Q Consensus        13 i~~~~~~~~~~~a~~----~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~-----~   83 (178)
                      |.+++..++|.++..    .|+.-++--.......|-.|.|.++...+.++-..=+..--.-+...|.++...|     .
T Consensus        90 IQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VLl  169 (309)
T PF07163_consen   90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVLL  169 (309)
T ss_pred             HHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHHh
Confidence            778888888888654    3444444456667777888888888877776665544321111223355555444     5


Q ss_pred             cccchhhHHHHH
Q 036068           84 NLRALDLGEWIK   95 (178)
Q Consensus        84 ~~~~~~~a~~~~   95 (178)
                      =.|.+++|+++.
T Consensus       170 PLG~~~eAeelv  181 (309)
T PF07163_consen  170 PLGHFSEAEELV  181 (309)
T ss_pred             ccccHHHHHHHH
Confidence            568888888876

Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane

>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1

Probab=81.67  E-value=9.9  Score=23.43  Aligned_cols=55  Identities=16%  Similarity=0.270  Sum_probs=32.7

Q ss_pred             HHHHHHHHhcCChhHHHHHhccCCC----------CChhHHHHHHHHHhhcCChhHHHHHHHHhHh
Q 036068           10 TAIVSRYINRGQVDIARQCFDQMPE----------RDYVLWTAMIDGYLRVNRFREALTLFQEMQT   65 (178)
Q Consensus        10 ~~li~~~~~~~~~~~a~~~~~~m~~----------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~   65 (178)
                      ++|+.+|... +...+..+++.=..          ....-|..|+..|...|..++|.++|.++..
T Consensus         3 TaLlk~Yl~~-~~~~l~~llr~~N~C~~~~~e~~L~~~~~~~eL~~lY~~kg~h~~AL~ll~~l~~   67 (108)
T PF10366_consen    3 TALLKCYLET-NPSLLGPLLRLPNYCDLEEVEEVLKEHGKYQELVDLYQGKGLHRKALELLKKLAD   67 (108)
T ss_pred             HHHHHHHHHh-CHHHHHHHHccCCcCCHHHHHHHHHHcCCHHHHHHHHHccCccHHHHHHHHHHhc
Confidence            4566666666 55555555543211          1233466777777777777777777776655

Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.

>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane

Probab=81.12  E-value=5.9  Score=22.94  Aligned_cols=46  Identities=9%  Similarity=0.000  Sum_probs=30.4

Q ss_pred             hcCChhHHHHHHHHhHhCCCCCcH--HHHHHHHHHhccccchhhHHHH
Q 036068           49 RVNRFREALTLFQEMQTSNIMGDE--FTIVSILTARANLRALDLGEWI   94 (178)
Q Consensus        49 ~~~~~~~a~~~~~~m~~~~~~~~~--~~~~~ll~~~~~~~~~~~a~~~   94 (178)
                      ..++.++|+..|...++.-..|..  .++..++++++.-|+++++...
T Consensus        18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f   65 (80)
T PF10579_consen   18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF   65 (80)
T ss_pred             ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            455678888888887665332221  4666778888888887776554

Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=81.02  E-value=27  Score=27.95  Aligned_cols=51  Identities=12%  Similarity=0.017  Sum_probs=41.8

Q ss_pred             HHHHHhccccchhhHHHHHHHHHHhCcc-cchHHHHHHHHHHHhcCChhhhc
Q 036068           77 SILTARANLRALDLGEWIKTYIDKNKVK-NDIFAGNALIDMYCICADVEKAQ  127 (178)
Q Consensus        77 ~ll~~~~~~~~~~~a~~~~~~m~~~~~~-~~~~~~~~ll~~~~~~~~~~~a~  127 (178)
                      -+..++.+.|+.++|.+.+.+|.+.... ....+...|+..+...+.+.+++
T Consensus       264 RLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q  315 (539)
T PF04184_consen  264 RLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQ  315 (539)
T ss_pred             HHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHH
Confidence            4566777899999999999999875433 34668889999999999999987

The molecular function of this protein is uncertain.

>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]

Probab=80.98  E-value=28  Score=28.12  Aligned_cols=146  Identities=7%  Similarity=0.004  Sum_probs=88.8

Q ss_pred             HHHHHHHHHHhcCChhHHHHHhccCCC--CChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHHhccc
Q 036068            8 SWTAIVSRYINRGQVDIARQCFDQMPE--RDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANL   85 (178)
Q Consensus         8 ~~~~li~~~~~~~~~~~a~~~~~~m~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~   85 (178)
                      ..-+++..|+++-+++.+..+-.+|..  .+-..|-.++..|..+ ..++-..+|+++.+..+. |+..-..+..-|-+ 
T Consensus        68 ~l~~~~~~f~~n~k~~~veh~c~~~l~~~e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReLa~~yEk-  144 (711)
T COG1747          68 CLVTLLTIFGDNHKNQIVEHLCTRVLEYGESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGRELADKYEK-  144 (711)
T ss_pred             HHHHHHHHhccchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHHHHHHHH-
Confidence            355677888888888888888877763  5777888888888888 457888888888776543 33333344444433 


Q ss_pred             cchhhHHHHHHHHHHhCcc-----cchHHHHHHHHHHHhcCChhhhc-------------cchhhHHHHHHHHHhcCChh
Q 036068           86 RALDLGEWIKTYIDKNKVK-----NDIFAGNALIDMYCICADVEKAQ-------------KDKFSWTTMIVGLAISGNGD  147 (178)
Q Consensus        86 ~~~~~a~~~~~~m~~~~~~-----~~~~~~~~ll~~~~~~~~~~~a~-------------~~~~~~~~li~~~~~~~~~~  147 (178)
                      .+.+.+..+|.....+-++     .--.+|.-+...-..  +.+...             .-.+.+.-+-..|....++.
T Consensus       145 ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i~d--D~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~~eN~~  222 (711)
T COG1747         145 IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELIGD--DKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSENENWT  222 (711)
T ss_pred             hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhccc--cHHHHHHHHHHHHHhhccchHHHHHHHHHHHhccccCHH
Confidence            5556666666554433222     112344444431111  111100             24555666677788888899


Q ss_pred             HHHHHHHHHHH
Q 036068          148 KALDMFSQMLR  158 (178)
Q Consensus       148 ~a~~~~~~m~~  158 (178)
                      +|+++++.+++
T Consensus       223 eai~Ilk~il~  233 (711)
T COG1747         223 EAIRILKHILE  233 (711)
T ss_pred             HHHHHHHHHhh
Confidence            99988886554

>PRK13342 recombination factor protein RarA; Reviewed

Probab=80.84  E-value=24  Score=27.38  Aligned_cols=115  Identities=14%  Similarity=0.026  Sum_probs=66.6

Q ss_pred             hhHHHHHHHHhHhC---CC-CCcHHHHHHHHHHhccccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHhcCChhhhcc
Q 036068           53 FREALTLFQEMQTS---NI-MGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQK  128 (178)
Q Consensus        53 ~~~a~~~~~~m~~~---~~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~  128 (178)
                      .++...++++....   |+ ..+......++..+  .|+...+..+++.....+...+......++.....  .++   .
T Consensus       153 ~e~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s--~Gd~R~aln~Le~~~~~~~~It~~~v~~~~~~~~~--~~d---~  225 (413)
T PRK13342        153 EEDIEQLLKRALEDKERGLVELDDEALDALARLA--NGDARRALNLLELAALGVDSITLELLEEALQKRAA--RYD---K  225 (413)
T ss_pred             HHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhC--CCCHHHHHHHHHHHHHccCCCCHHHHHHHHhhhhh--ccC---C
Confidence            45666666665432   43 45555555565543  68888888888876654333444444444432111  111   1


Q ss_pred             chhhHHHHHHHHHh---cCChhHHHHHHHHHHHcCCCCChhHHHHHHhh
Q 036068          129 DKFSWTTMIVGLAI---SGNGDKALDMFSQMLRASIKPDEVAYVGVLSA  174 (178)
Q Consensus       129 ~~~~~~~li~~~~~---~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~a  174 (178)
                      +.....-++.++.+   .++.+.|+..+.+|.+.|..|....=..++.+
T Consensus       226 ~~~~~~~~isa~~ks~rgsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a  274 (413)
T PRK13342        226 DGDEHYDLISALHKSIRGSDPDAALYYLARMLEAGEDPLFIARRLVIIA  274 (413)
T ss_pred             CccHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence            11223344444444   58999999999999999988886554444433

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=80.80  E-value=26  Score=27.77  Aligned_cols=161  Identities=13%  Similarity=0.066  Sum_probs=72.0

Q ss_pred             HHHHhcCChhHHHHHhccCCC-----C--ChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHHh-ccc
Q 036068           14 SRYINRGQVDIARQCFDQMPE-----R--DYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTAR-ANL   85 (178)
Q Consensus        14 ~~~~~~~~~~~a~~~~~~m~~-----~--~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~-~~~   85 (178)
                      +.+...|++++|.+.|++...     +  ....+--+.-.+.-..+|++|.+.|.++.+.. .-+..+|.-+.-+| ...
T Consensus       275 R~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s-~WSka~Y~Y~~a~c~~~l  353 (468)
T PF10300_consen  275 RLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES-KWSKAFYAYLAAACLLML  353 (468)
T ss_pred             HHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc-ccHHHHHHHHHHHHHHhh
Confidence            344456677777777775332     0  11122233444555567777777777776643 22333443333332 344


Q ss_pred             cch-------hhHHHHHHHHHH-------hCcccchHHHHHHHHHHHhcCC--hhhhccchhhHH--HHHHHHHhcCChh
Q 036068           86 RAL-------DLGEWIKTYIDK-------NKVKNDIFAGNALIDMYCICAD--VEKAQKDKFSWT--TMIVGLAISGNGD  147 (178)
Q Consensus        86 ~~~-------~~a~~~~~~m~~-------~~~~~~~~~~~~ll~~~~~~~~--~~~a~~~~~~~~--~li~~~~~~~~~~  147 (178)
                      ++.       ++|.+++.....       +..+.+..+..- +.-|.+.+.  ..++..-...+.  .+-.++.+.++-.
T Consensus       354 ~~~~~~~~~~~~a~~l~~~vp~l~~k~~gk~lp~E~Fv~RK-~~~~~~~~~~~~~d~~~~~p~~El~y~WNg~~~~~~~~  432 (468)
T PF10300_consen  354 GREEEAKEHKKEAEELFRKVPKLKQKKAGKSLPLEKFVIRK-AQKYEKQAKVDLVDAILVLPALELMYFWNGFPRMPKEE  432 (468)
T ss_pred             ccchhhhhhHHHHHHHHHHHHHHHhhhccCCCChHHHHHHH-HHHHHhcCCCcchhhhhcCHHHHHHHHHhccccCChHH
Confidence            444       556666654432       111112222111 223333321  111211111111  1223444444444


Q ss_pred             HHHHHHHHHHHc---CCCCChhHHHHHHhhhh
Q 036068          148 KALDMFSQMLRA---SIKPDEVAYVGVLSACT  176 (178)
Q Consensus       148 ~a~~~~~~m~~~---g~~p~~~t~~~li~a~~  176 (178)
                      .-...+.+..+.   ...+|......||.|.+
T Consensus       433 l~~~~~~~l~~~~~~~~~~De~~l~~lL~g~~  464 (468)
T PF10300_consen  433 LEIKSLLELEESKNSEEDPDERALRHLLKGAC  464 (468)
T ss_pred             HHHHHHHHHHhcccccCCccHHHHHHHHHHHH
Confidence            332344444332   35678888888888754

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins

Probab=80.77  E-value=20  Score=26.37  Aligned_cols=118  Identities=9%  Similarity=0.073  Sum_probs=71.3

Q ss_pred             HHHHHHHHHHhcCChhHHHHHhccCC---------CCChh--------HHHHHHHHHhhcCChhHHHHHHHHhHhC--CC
Q 036068            8 SWTAIVSRYINRGQVDIARQCFDQMP---------ERDYV--------LWTAMIDGYLRVNRFREALTLFQEMQTS--NI   68 (178)
Q Consensus         8 ~~~~li~~~~~~~~~~~a~~~~~~m~---------~~~~~--------~~~~li~~~~~~~~~~~a~~~~~~m~~~--~~   68 (178)
                      ....-.+-+.-+.|+..|.+.-++--         +.+..        ..-.=|.+++..++|.++....-+-...  .+
T Consensus        37 lLe~Aad~LvV~rdF~aal~tCerglqsL~~~a~~ee~~~~~~evK~sLcvvGIQALAEmnrWreVLsWvlqyYq~pEkl  116 (309)
T PF07163_consen   37 LLEEAADLLVVHRDFQAALETCERGLQSLASDADAEEPAGSSLEVKCSLCVVGIQALAEMNRWREVLSWVLQYYQVPEKL  116 (309)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccchhhhhhhhhhhhHHHHHHHhhHHHHHHHHHHHhcCcccC
Confidence            34444455556677777666655421         11111        1122367888999999988766554432  34


Q ss_pred             CCcHHHHHHHHHHhccccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHh-----cCChhhhc
Q 036068           69 MGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCI-----CADVEKAQ  127 (178)
Q Consensus        69 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~-----~~~~~~a~  127 (178)
                      +|.  +.-..|-.|.+.+++..+.++-+.-.+..-..+..-|..+...|..     .|.+++|.
T Consensus       117 Ppk--IleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VLlPLG~~~eAe  178 (309)
T PF07163_consen  117 PPK--ILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVLLPLGHFSEAE  178 (309)
T ss_pred             CHH--HHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHHhccccHHHHH
Confidence            444  4445566678888988888888766654434444557777776654     47777764

Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane

>smart00028 TPR Tetratricopeptide repeats

Probab=80.63  E-value=3.5  Score=17.53  Aligned_cols=28  Identities=18%  Similarity=0.197  Sum_probs=23.5

Q ss_pred             hhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 036068          131 FSWTTMIVGLAISGNGDKALDMFSQMLR  158 (178)
Q Consensus       131 ~~~~~li~~~~~~~~~~~a~~~~~~m~~  158 (178)
                      ..|..+...+...|++++|...+++.++
T Consensus         2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~   29 (34)
T smart00028        2 EALYNLGNAYLKLGDYDEALEYYEKALE   29 (34)
T ss_pred             hHHHHHHHHHHHHhhHHHHHHHHHHHHc
Confidence            3567778888999999999999988775

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	178
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	4e-06

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134

 Score = 45.2 bits (105), Expect = 4e-06
 Identities = 18/153 (11%), Positives = 44/153 (28%), Gaps = 15/153 (9%)

Query: 40  WTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYID 99
            T  +    R+   + A  L    + +     E  +  +L       +LD+ +       
Sbjct: 60  LTRRLQVEPRLLSKQMAGCLEDCTRQAPESPWEEQLARLLQEAPGKLSLDVEQAPSGQHS 119

Query: 100 KNKVKNDIFAGNALIDMYCICADVEKAQK---------------DKFSWTTMIVGLAISG 144
           + ++        A      +   +  A                     +  +++G A  G
Sbjct: 120 QAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQG 179

Query: 145 NGDKALDMFSQMLRASIKPDEVAYVGVLSACTH 177
              + + +   +  A + PD ++Y   L     
Sbjct: 180 AFKELVYVLFMVKDAGLTPDLLSYAAALQCMGR 212

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	178
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	100.0
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	100.0
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	99.91
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	99.91
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	99.78
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	99.77
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.5
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.49
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	99.49
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.49
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.48
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.47
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.47
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	99.47
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	99.45
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.45
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.45
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.44
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.44
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	99.42
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	99.42
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.42
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.39
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	99.38
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	99.38
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.37
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	99.36
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	99.35
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.33
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	99.33
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.32
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.31
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.29
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.29
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.27
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	99.25
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.24
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	99.22
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	99.22
2gw1_A	514	Mitochondrial precursor proteins import receptor;	99.2
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.2
2gw1_A	514	Mitochondrial precursor proteins import receptor;	99.19
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	99.19
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	99.15
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	99.15
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.14
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	99.13
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	99.11
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.09
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.09
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	99.08
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	99.07
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	99.07
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.06
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	99.05
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	99.04
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	99.04
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.03
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	99.03
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	99.03
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.01
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.0
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	98.99
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	98.95
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	98.92
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	98.92
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	98.9
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	98.89
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	98.88
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	98.88
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	98.85
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	98.85
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	98.85
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	98.84
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	98.84
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	98.84
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	98.81
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	98.79
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	98.77
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	98.77
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	98.77
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	98.71
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	98.71
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	98.71
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	98.69
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	98.69
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	98.66
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	98.66
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	98.66
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	98.66
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	98.64
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	98.63
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	98.63
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	98.63
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	98.63
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	98.62
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	98.62
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	98.62
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	98.61
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	98.61
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	98.61
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	98.61
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	98.6
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	98.59
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	98.59
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	98.56
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	98.56
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	98.56
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	98.55
4g1t_A	472	Interferon-induced protein with tetratricopeptide	98.55
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	98.54
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	98.54
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	98.53
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	98.53
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	98.53
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	98.52
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	98.52
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	98.51
4g1t_A	472	Interferon-induced protein with tetratricopeptide	98.49
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	98.49
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	98.48
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	98.48
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	98.47
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	98.46
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	98.44
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	98.43
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	98.43
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	98.43
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	98.42
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	98.42
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	98.4
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	98.4
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	98.4
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	98.39
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	98.39
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	98.39
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	98.36
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	98.36
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	98.36
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	98.36
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	98.35
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	98.35
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	98.35
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	98.33
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	98.33
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	98.32
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	98.31
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	98.3
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	98.28
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	98.28
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	98.26
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	98.24
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	98.21
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	98.19
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	98.19
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	98.19
3k9i_A	117	BH0479 protein; putative protein binding protein,	98.17
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	98.16
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	98.13
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	98.13
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	98.12
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	98.11
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	98.11
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	98.09
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	98.09
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	98.08
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	98.06
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	98.0
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	98.0
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	98.0
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	98.0
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	97.99
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	97.98
3k9i_A	117	BH0479 protein; putative protein binding protein,	97.97
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	97.94
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	97.91
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	97.9
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	97.83
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	97.83
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	97.82
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	97.81
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	97.8
2l6j_A	111	TPR repeat-containing protein associated with HSP;	97.8
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	97.75
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	97.73
2l6j_A	111	TPR repeat-containing protein associated with HSP;	97.73
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	97.7
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	97.67
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	97.67
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	97.63
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	97.63
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	97.57
2kat_A	115	Uncharacterized protein; NESG, structure, structur	97.55
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	97.47
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	97.41
2kat_A	115	Uncharacterized protein; NESG, structure, structur	97.37
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	97.32
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	97.31
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	97.27
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	97.27
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	97.2
1klx_A	138	Cysteine rich protein B; structural genomics, heli	97.16
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	97.12
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	97.09
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	97.03
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	96.96
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	96.85
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	96.84
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	96.77
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	96.55
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	96.53
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	96.47
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	96.22
3mkq_B	177	Coatomer subunit alpha; beta-propeller, alpha-sole	96.21
1wy6_A	172	Hypothetical protein ST1625; helical repeat protei	96.19
1klx_A	138	Cysteine rich protein B; structural genomics, heli	96.12
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	96.09
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	96.06
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	95.89
1v54_E	109	Cytochrome C oxidase polypeptide VA; oxidoreductas	95.85
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	95.84
4fhn_B	1139	Nucleoporin NUP120; protein complex,structural pro	95.83
3lvg_A	624	Clathrin heavy chain 1; SELF assembly, coated PIT,	95.79
4h7y_A	161	Dual specificity protein kinase TTK; mitotic check	95.74
1pc2_A	152	Mitochondria fission protein; unknown function; NM	95.23
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	95.1
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	95.01
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	94.76
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	94.6
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	94.59
2y69_E	152	Cytochrome C oxidase subunit 5A; electron transpor	94.48
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	94.29
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	94.14
2nsz_A	129	Programmed cell death protein 4; PDCD4, tumor supp	93.93
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	93.82
1pc2_A	152	Mitochondria fission protein; unknown function; NM	93.71
1ug3_A	339	EIF4GI, eukaryotic protein synthesis initiation fa	93.52
2ion_A	152	PDCD4, programmed cell death 4, PDCD4; alpha-helic	92.79
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	92.34
4fhn_B	1139	Nucleoporin NUP120; protein complex,structural pro	92.28
3mkq_B	177	Coatomer subunit alpha; beta-propeller, alpha-sole	91.83
3lvg_A	624	Clathrin heavy chain 1; SELF assembly, coated PIT,	91.3
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	90.59
1wy6_A	172	Hypothetical protein ST1625; helical repeat protei	90.26
2nsz_A	129	Programmed cell death protein 4; PDCD4, tumor supp	89.76
2ion_A	152	PDCD4, programmed cell death 4, PDCD4; alpha-helic	89.43
2xig_A	150	Ferric uptake regulation protein; hpfur, transcrip	89.39
4b4t_R	429	RPN7, 26S proteasome regulatory subunit RPN7; hydr	89.27
4b4t_R	429	RPN7, 26S proteasome regulatory subunit RPN7; hydr	89.25
2fe3_A	145	Peroxide operon regulator; oxidative stress regula	88.9
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	88.65
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	88.46
1mzb_A	136	Ferric uptake regulation protein; ferric uptake re	88.14
2w57_A	150	Ferric uptake regulation protein; gene regulation,	88.13
2zu6_B	307	Programmed cell death protein 4; protein-protein c	87.44
2uwj_G	115	Type III export protein PSCG; virulence, chaperone	87.43
3esl_A	202	Checkpoint serine/threonine-protein kinase BUB1; m	87.25
3eiq_C	358	Programmed cell death protein 4; PDCD4, anti-oncog	86.74
2p58_C	116	Putative type III secretion protein YSCG; type III	86.67
3eyy_A	145	Putative iron uptake regulatory protein; NUR, nick	85.53
4ets_A	162	Ferric uptake regulation protein; metal binding pr	85.45
2fu4_A	83	Ferric uptake regulation protein; DNA binding doma	84.06
1v54_E	109	Cytochrome C oxidase polypeptide VA; oxidoreductas	83.62
3ltj_A	201	Alpharep-4; protein engineering, heat-like repeat,	82.7
1y8m_A	144	FIS1; mitochondria, unknown function; NMR {Sacchar	81.77
1ug3_A	339	EIF4GI, eukaryotic protein synthesis initiation fa	80.91

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=100.00  E-value=2.3e-37  Score=237.38  Aligned_cols=171  Identities=9%  Similarity=0.078  Sum_probs=163.8

Q ss_pred             hHHHHHHHHHHhcCChhHHHHHhccCC----CCChhHHHHHHHHHhhcCC---------hhHHHHHHHHhHhCCCCCcHH
Q 036068            7 ISWTAIVSRYINRGQVDIARQCFDQMP----ERDYVLWTAMIDGYLRVNR---------FREALTLFQEMQTSNIMGDEF   73 (178)
Q Consensus         7 ~~~~~li~~~~~~~~~~~a~~~~~~m~----~~~~~~~~~li~~~~~~~~---------~~~a~~~~~~m~~~~~~~~~~   73 (178)
                      .+++.+|++|++.|++++|.++|++|+    +||..+||+||.+|++.+.         .++|.++|++|.+.|+.||..
T Consensus        27 ~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~  106 (501)
T 4g26_A           27 ALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEA  106 (501)
T ss_dssp             HHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHH
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHH
Confidence            457889999999999999999999997    4899999999999998765         688999999999999999999


Q ss_pred             HHHHHHHHhccccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHhcCChhhhc------------cchhhHHHHHHHHH
Q 036068           74 TIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ------------KDKFSWTTMIVGLA  141 (178)
Q Consensus        74 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~------------~~~~~~~~li~~~~  141 (178)
                      ||+++|.+|++.|++++|.++|++|.+.|+.|+..||+++|.+|++.|++++|.            ||..||++||.+|+
T Consensus       107 tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~  186 (501)
T 4g26_A          107 TFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSM  186 (501)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHh
Confidence            999999999999999999999999999999999999999999999999999997            89999999999999


Q ss_pred             hcCChhHHHHHHHHHHHcCCCCChhHHHHHHhhhhc
Q 036068          142 ISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACTH  177 (178)
Q Consensus       142 ~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~a~~~  177 (178)
                      +.|++++|.+++++|.+.|+.|+..||+.|+..|+.
T Consensus       187 ~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s  222 (501)
T 4g26_A          187 DTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKS  222 (501)
T ss_dssp             HTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHS
T ss_pred             hCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhc
Confidence            999999999999999999999999999999998864

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=100.00  E-value=7.3e-32  Score=206.93  Aligned_cols=154  Identities=18%  Similarity=0.171  Sum_probs=135.9

Q ss_pred             HHHHhccCCCC-----ChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHHhccccc---------hhh
Q 036068           25 ARQCFDQMPER-----DYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANLRA---------LDL   90 (178)
Q Consensus        25 a~~~~~~m~~~-----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~---------~~~   90 (178)
                      +..+.++++++     ....++.+|.+|++.|++++|+++|++|.+.|+.||..||+++|.+|++.+.         +++
T Consensus         9 ~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~   88 (501)
T 4g26_A            9 SENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSR   88 (501)
T ss_dssp             ---------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHH
T ss_pred             HHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHH
Confidence            45555666542     3446889999999999999999999999999999999999999999987654         678


Q ss_pred             HHHHHHHHHHhCcccchHHHHHHHHHHHhcCChhhhc------------cchhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 036068           91 GEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ------------KDKFSWTTMIVGLAISGNGDKALDMFSQMLR  158 (178)
Q Consensus        91 a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~------------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~  158 (178)
                      |.++|++|.+.|+.||..||+++|.+|++.|++++|.            ||..+||+||.+|++.|++++|.++|++|.+
T Consensus        89 A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~  168 (501)
T 4g26_A           89 GFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVE  168 (501)
T ss_dssp             HHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHh
Confidence            9999999999999999999999999999999999997            8999999999999999999999999999999


Q ss_pred             cCCCCChhHHHHHHhhhhcC
Q 036068          159 ASIKPDEVAYVGVLSACTHN  178 (178)
Q Consensus       159 ~g~~p~~~t~~~li~a~~~~  178 (178)
                      .|+.||..||++||++|+++
T Consensus       169 ~G~~Pd~~ty~~Li~~~~~~  188 (501)
T 4g26_A          169 SEVVPEEPELAALLKVSMDT  188 (501)
T ss_dssp             TTCCCCHHHHHHHHHHHHHT
T ss_pred             cCCCCCHHHHHHHHHHHhhC
Confidence            99999999999999999864

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}

Probab=99.91  E-value=1.5e-24  Score=173.79  Aligned_cols=138  Identities=11%  Similarity=0.052  Sum_probs=120.6

Q ss_pred             hHHHHHHHHHHhcCChhHHHHHhccCC-------CCChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHH
Q 036068            7 ISWTAIVSRYINRGQVDIARQCFDQMP-------ERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSIL   79 (178)
Q Consensus         7 ~~~~~li~~~~~~~~~~~a~~~~~~m~-------~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll   79 (178)
                      .+||++|++|++.|++++|.++|++|.       .||+.|||+||.+|++.|++++|.++|++|.+.|+.||..||+++|
T Consensus       128 ~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntLI  207 (1134)
T 3spa_A          128 QRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAAL  207 (1134)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHH
Confidence            489999999999999999999998764       4899999999999999999999999999999999999999999999


Q ss_pred             HHhccccch-hhHHHHHHHHHHhCcccchHHHHHHHHHHHhcCChhhhc-------c------chhhHHHHHHHHHhcC
Q 036068           80 TARANLRAL-DLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ-------K------DKFSWTTMIVGLAISG  144 (178)
Q Consensus        80 ~~~~~~~~~-~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~-------~------~~~~~~~li~~~~~~~  144 (178)
                      .++|+.|+. ++|.+++++|.+.|+.||..+|+.++.+..+.+-++.+.       |      .+.+.+.|...|.+.+
T Consensus       208 ~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv~P~f~p~~~~~~~~~t~~LL~dl~s~d~  286 (1134)
T 3spa_A          208 QCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAKDG  286 (1134)
T ss_dssp             HHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHHGGGCCCCCCCCCCCCCCCCCTTTHHHHCCCS
T ss_pred             HHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHHHHhCcccCCCCCCcccccchHHHHHHHccCC
Confidence            999999985 789999999999999999999998887777765555443       2      2455566666676655

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}

Probab=99.91  E-value=3.6e-24  Score=171.58  Aligned_cols=118  Identities=10%  Similarity=0.060  Sum_probs=103.5

Q ss_pred             hhHHHHHHHHHhhcCChhHHHHHHHHhH---hCCCCCcHHHHHHHHHHhccccchhhHHHHHHHHHHhCcccchHHHHHH
Q 036068           37 YVLWTAMIDGYLRVNRFREALTLFQEMQ---TSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNAL  113 (178)
Q Consensus        37 ~~~~~~li~~~~~~~~~~~a~~~~~~m~---~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l  113 (178)
                      ..|||+||++|++.|++++|.++|++|.   ..|+.||..|||+||++||+.|++++|.++|++|.+.|+.||..|    
T Consensus       127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvT----  202 (1134)
T 3spa_A          127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLS----  202 (1134)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHH----
T ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHH----
Confidence            3489999999999999999999998876   458999999999999999999999999999999999999985555    


Q ss_pred             HHHHHhcCChhhhccchhhHHHHHHHHHhcCCh-hHHHHHHHHHHHcCCCCChhHHHHHHhhhhc
Q 036068          114 IDMYCICADVEKAQKDKFSWTTMIVGLAISGNG-DKALDMFSQMLRASIKPDEVAYVGVLSACTH  177 (178)
Q Consensus       114 l~~~~~~~~~~~a~~~~~~~~~li~~~~~~~~~-~~a~~~~~~m~~~g~~p~~~t~~~li~a~~~  177 (178)
                                         ||+||.++|+.|+. ++|.++|++|.+.|+.||..||++++.++.+
T Consensus       203 -------------------YntLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR  248 (1134)
T 3spa_A          203 -------------------YAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDR  248 (1134)
T ss_dssp             -------------------HHHHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHH
T ss_pred             -------------------HHHHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhH
Confidence                               55566666666663 6899999999999999999999988877643

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=99.78  E-value=1.2e-17  Score=129.99  Aligned_cols=172  Identities=15%  Similarity=-0.003  Sum_probs=122.3

Q ss_pred             cchhHHHHHHHHHHhcCChhHHHHHhccCCC-------------------------------------CChhHHHHHHHH
Q 036068            4 KDVISWTAIVSRYINRGQVDIARQCFDQMPE-------------------------------------RDYVLWTAMIDG   46 (178)
Q Consensus         4 p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~-------------------------------------~~~~~~~~li~~   46 (178)
                      +++.+|+.++.++.+.|++++|.++|+++.+                                     .+..+|+.+...
T Consensus       303 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~  382 (597)
T 2xpi_A          303 KSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIY  382 (597)
T ss_dssp             GCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCcccHHHHHHHHHH
Confidence            5666777777777777777777777776631                                     245566667777


Q ss_pred             HhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHHhccccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHhcCChhhh
Q 036068           47 YLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKA  126 (178)
Q Consensus        47 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a  126 (178)
                      |.+.|++++|.++|+++.+.. +.+..+|+.++.++.+.|++++|.++|+.+.+.+. .+..+|+.+...|.+.|++++|
T Consensus       383 ~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A  460 (597)
T 2xpi_A          383 YLCVNKISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQ-GTHLPYLFLGMQHMQLGNILLA  460 (597)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTT-TCSHHHHHHHHHHHHHTCHHHH
T ss_pred             HHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-cchHHHHHHHHHHHHcCCHHHH
Confidence            777777777777777766543 23456777777777777777777777777766543 3567777777777777777777


Q ss_pred             c-----------cchhhHHHHHHHHHhcCChhHHHHHHHHHHHc----CCCCC--hhHHHHHHhhhhc
Q 036068          127 Q-----------KDKFSWTTMIVGLAISGNGDKALDMFSQMLRA----SIKPD--EVAYVGVLSACTH  177 (178)
Q Consensus       127 ~-----------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----g~~p~--~~t~~~li~a~~~  177 (178)
                      .           .+..+|+.++..|.+.|++++|.++|+++.+.    +..|+  ..+|..+..+|.+
T Consensus       461 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~  528 (597)
T 2xpi_A          461 NEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRK  528 (597)
T ss_dssp             HHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHH
Confidence            6           35777888888888888888888888888765    66777  5677777777653

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=99.77  E-value=2.4e-17  Score=128.28  Aligned_cols=170  Identities=14%  Similarity=0.124  Sum_probs=112.1

Q ss_pred             cchhHHHHHHHHHHhcCChhHHHHHhccCCC---CChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHH
Q 036068            4 KDVISWTAIVSRYINRGQVDIARQCFDQMPE---RDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILT   80 (178)
Q Consensus         4 p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~   80 (178)
                      .++.+|+.+...|.+.|++++|.++|+++.+   .+..+|+.++..|.+.|++++|.++|+++.+.+ +.+..+|..+..
T Consensus       371 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~  449 (597)
T 2xpi_A          371 EKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGM  449 (597)
T ss_dssp             TSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHH
Confidence            4566677777777777777777777776542   356677777777777777777777777776654 335666777777


Q ss_pred             HhccccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHhcCChhhhc----------------cc--hhhHHHHHHHHHh
Q 036068           81 ARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ----------------KD--KFSWTTMIVGLAI  142 (178)
Q Consensus        81 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~----------------~~--~~~~~~li~~~~~  142 (178)
                      +|.+.|++++|.++|+.+.+... .++.+|+.+...|.+.|++++|.                |+  ..+|+.+...|.+
T Consensus       450 ~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~  528 (597)
T 2xpi_A          450 QHMQLGNILLANEYLQSSYALFQ-YDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRK  528 (597)
T ss_dssp             HHHHHTCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHH
Confidence            77777777777777777666543 25666777777777777776665                22  4566677777777


Q ss_pred             cCChhHHHHHHHHHHHcCCCCChhHHHHHHhhhh
Q 036068          143 SGNGDKALDMFSQMLRASIKPDEVAYVGVLSACT  176 (178)
Q Consensus       143 ~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~a~~  176 (178)
                      .|++++|.++|+++.+.+ +.+..+|..+..+|.
T Consensus       529 ~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~  561 (597)
T 2xpi_A          529 LKMYDAAIDALNQGLLLS-TNDANVHTAIALVYL  561 (597)
T ss_dssp             TTCHHHHHHHHHHHHHHS-SCCHHHHHHHHHHHH
T ss_pred             hcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHH
Confidence            777777777777766543 235566666665554

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.50  E-value=4.1e-12  Score=86.60  Aligned_cols=156  Identities=8%  Similarity=-0.065  Sum_probs=123.9

Q ss_pred             CcchhHHHHHHHHHHhcCChhHHHHHhccCCC---CChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHH
Q 036068            3 NKDVISWTAIVSRYINRGQVDIARQCFDQMPE---RDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSIL   79 (178)
Q Consensus         3 ~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll   79 (178)
                      +.++..|..+...+.+.|++++|.+.|++..+   .+...+..+...+...|++++|.+.+++..+.. +.+..++..+.
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~   83 (225)
T 2vq2_A            5 NQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYG   83 (225)
T ss_dssp             CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred             cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHH
Confidence            45667788888889999999999998887653   367788888888888999999999998887764 33567788888


Q ss_pred             HHhccc-cchhhHHHHHHHHHHhCccc-chHHHHHHHHHHHhcCChhhhc-----------cchhhHHHHHHHHHhcCCh
Q 036068           80 TARANL-RALDLGEWIKTYIDKNKVKN-DIFAGNALIDMYCICADVEKAQ-----------KDKFSWTTMIVGLAISGNG  146 (178)
Q Consensus        80 ~~~~~~-~~~~~a~~~~~~m~~~~~~~-~~~~~~~ll~~~~~~~~~~~a~-----------~~~~~~~~li~~~~~~~~~  146 (178)
                      ..+... |++++|...++.+.+.+..| +...+..+...+.+.|++++|.           .+...+..+...+.+.|++
T Consensus        84 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~  163 (225)
T 2vq2_A           84 WFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQL  163 (225)
T ss_dssp             HHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCH
T ss_pred             HHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCH
Confidence            888888 99999999998888732222 3677888888888899988887           2467778888888888999


Q ss_pred             hHHHHHHHHHHHc
Q 036068          147 DKALDMFSQMLRA  159 (178)
Q Consensus       147 ~~a~~~~~~m~~~  159 (178)
                      ++|.+++++..+.
T Consensus       164 ~~A~~~~~~~~~~  176 (225)
T 2vq2_A          164 GDADYYFKKYQSR  176 (225)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHh
Confidence            9999888888764

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.49  E-value=5.2e-12  Score=86.79  Aligned_cols=169  Identities=14%  Similarity=0.030  Sum_probs=140.5

Q ss_pred             CCCcchhHHHHHHHHHHhcCChhHHHHHhccCCC---CChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHH
Q 036068            1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPE---RDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVS   77 (178)
Q Consensus         1 ~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~   77 (178)
                      || +++..+..+-..+.+.|++++|...|++..+   .+...+..+-..+.+.|++++|...|++..+.. +-+...+..
T Consensus         1 ~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~   78 (217)
T 2pl2_A            1 MQ-TAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMV   78 (217)
T ss_dssp             ----CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred             CC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHH
Confidence            55 7778889999999999999999999998653   377889999999999999999999999998875 335678888


Q ss_pred             HHHHhccc-----------cchhhHHHHHHHHHHhCcccchHHHHHHHHHHHhcCChhhhc----------cchhhHHHH
Q 036068           78 ILTARANL-----------RALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ----------KDKFSWTTM  136 (178)
Q Consensus        78 ll~~~~~~-----------~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~----------~~~~~~~~l  136 (178)
                      +-.++.+.           |++++|...++...+..+. +...+..+-..|...|++++|.          .+...+..+
T Consensus        79 lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~l  157 (217)
T 2pl2_A           79 LSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPR-YAPLHLQRGLVYALLGERDKAEASLKQALALEDTPEIRSAL  157 (217)
T ss_dssp             HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHH
T ss_pred             HHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHH
Confidence            89999999           9999999999999987643 5778889999999999999987          356778889


Q ss_pred             HHHHHhcCChhHHHHHHHHHHHcCCCCC-hhHHHHHHhh
Q 036068          137 IVGLAISGNGDKALDMFSQMLRASIKPD-EVAYVGVLSA  174 (178)
Q Consensus       137 i~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~t~~~li~a  174 (178)
                      ...+...|++++|...|++..+.  .|+ ...+..+-..
T Consensus       158 a~~~~~~g~~~~A~~~~~~al~~--~P~~~~~~~~la~~  194 (217)
T 2pl2_A          158 AELYLSMGRLDEALAQYAKALEQ--APKDLDLRVRYASA  194 (217)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHH--STTCHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHH
Confidence            99999999999999999999875  454 3444444333

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=99.49  E-value=3.8e-12  Score=94.22  Aligned_cols=120  Identities=12%  Similarity=0.002  Sum_probs=56.3

Q ss_pred             hhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHHhccccchhhHHHHHHHHHHhCcccchHHHHHHHHH
Q 036068           37 YVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDM  116 (178)
Q Consensus        37 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~  116 (178)
                      ..++..+...|.+.|++++|.+.|+++.+.+ +.+..++..+..++.+.|++++|.+.++.+.+.. +.+..++..+...
T Consensus       237 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~  314 (388)
T 1w3b_A          237 AVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANI  314 (388)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHH
Confidence            3344444444444444444544444444432 1123344444444555555555555554444433 2234444455555


Q ss_pred             HHhcCChhhhc----------c-chhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 036068          117 YCICADVEKAQ----------K-DKFSWTTMIVGLAISGNGDKALDMFSQMLR  158 (178)
Q Consensus       117 ~~~~~~~~~a~----------~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~  158 (178)
                      +.+.|++++|.          | +..++..+...+.+.|++++|.+.|+++.+
T Consensus       315 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~  367 (388)
T 1w3b_A          315 KREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR  367 (388)
T ss_dssp             HHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHT
T ss_pred             HHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            55555554443          1 234455555555555555555555555543

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.49  E-value=7e-12  Score=87.28  Aligned_cols=152  Identities=9%  Similarity=-0.074  Sum_probs=77.1

Q ss_pred             hhHHHHHHHHHHhcCChhHHHHHhccCCC---CChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHHh
Q 036068            6 VISWTAIVSRYINRGQVDIARQCFDQMPE---RDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTAR   82 (178)
Q Consensus         6 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~   82 (178)
                      +..|..+...+...|++++|.+.|++..+   .+...+..+...|...|++++|.+.|++..+.. +.+...+..+...+
T Consensus        37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~  115 (252)
T 2ho1_A           37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFL  115 (252)
T ss_dssp             HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHH
Confidence            34455555555555555555555555432   244455555555555555555555555554442 12344555555555


Q ss_pred             ccccchhhHHHHHHHHHHhCccc-chHHHHHHHHHHHhcCChhhhc-----------cchhhHHHHHHHHHhcCChhHHH
Q 036068           83 ANLRALDLGEWIKTYIDKNKVKN-DIFAGNALIDMYCICADVEKAQ-----------KDKFSWTTMIVGLAISGNGDKAL  150 (178)
Q Consensus        83 ~~~~~~~~a~~~~~~m~~~~~~~-~~~~~~~ll~~~~~~~~~~~a~-----------~~~~~~~~li~~~~~~~~~~~a~  150 (178)
                      .+.|++++|.++++.+.+.+..| +...+..+...|.+.|++++|.           .+...+..+...+...|++++|.
T Consensus       116 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~  195 (252)
T 2ho1_A          116 YEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPAR  195 (252)
T ss_dssp             HHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHH
Confidence            55555555555555554421122 3444555555555555555554           13444445555555555555555


Q ss_pred             HHHHHHHH
Q 036068          151 DMFSQMLR  158 (178)
Q Consensus       151 ~~~~~m~~  158 (178)
                      +++++..+
T Consensus       196 ~~~~~~~~  203 (252)
T 2ho1_A          196 QYYDLFAQ  203 (252)
T ss_dssp             HHHHHHHT
T ss_pred             HHHHHHHH
Confidence            55555443

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.48  E-value=2.1e-12  Score=97.08  Aligned_cols=153  Identities=14%  Similarity=0.073  Sum_probs=80.8

Q ss_pred             chhHHHHHHHHHHhcCChhHHHHHhccCCC---CChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHH
Q 036068            5 DVISWTAIVSRYINRGQVDIARQCFDQMPE---RDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTA   81 (178)
Q Consensus         5 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~   81 (178)
                      ++..|..+...+.+.|++++|..+|+++.+   .+...|..+...|...|++++|...|+++.+.+ +.+...+..+..+
T Consensus        25 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~  103 (450)
T 2y4t_A           25 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRGHL  103 (450)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHH
Confidence            344555555666666666666666655432   244455555555555555555555555554443 1234444555555


Q ss_pred             hccccchhhHHHHHHHHHHhCc------------------------------------------------ccchHHHHHH
Q 036068           82 RANLRALDLGEWIKTYIDKNKV------------------------------------------------KNDIFAGNAL  113 (178)
Q Consensus        82 ~~~~~~~~~a~~~~~~m~~~~~------------------------------------------------~~~~~~~~~l  113 (178)
                      +.+.|++++|.+.++.+.+...                                                +.+..++..+
T Consensus       104 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l  183 (450)
T 2y4t_A          104 LLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELR  183 (450)
T ss_dssp             HHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHH
Confidence            5555555555555555444321                                                1234445555


Q ss_pred             HHHHHhcCChhhhc-----------cchhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 036068          114 IDMYCICADVEKAQ-----------KDKFSWTTMIVGLAISGNGDKALDMFSQMLR  158 (178)
Q Consensus       114 l~~~~~~~~~~~a~-----------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~  158 (178)
                      ...|.+.|++++|.           .+..+|..+...+...|++++|.+.|+++.+
T Consensus       184 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  239 (450)
T 2y4t_A          184 AECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLK  239 (450)
T ss_dssp             HHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            55555555555554           2455566666666666666666666666654

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.47  E-value=7.2e-12  Score=94.17  Aligned_cols=121  Identities=11%  Similarity=-0.002  Sum_probs=91.8

Q ss_pred             chhHHHHHHHHHHhcCChhHHHHHhccCCC--C-Ch---hHHHHHHHH------------HhhcCChhHHHHHHHHhHhC
Q 036068            5 DVISWTAIVSRYINRGQVDIARQCFDQMPE--R-DY---VLWTAMIDG------------YLRVNRFREALTLFQEMQTS   66 (178)
Q Consensus         5 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~--~-~~---~~~~~li~~------------~~~~~~~~~a~~~~~~m~~~   66 (178)
                      +..+|..+...+.+.|++++|.+.|+++.+  | +.   ..+..+...            +.+.|++++|...|+++.+.
T Consensus        93 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~  172 (450)
T 2y4t_A           93 FTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEV  172 (450)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            455666777777777777777777776653  2 33   555555443            67777777777777777665


Q ss_pred             CCCCcHHHHHHHHHHhccccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHhcCChhhhc
Q 036068           67 NIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ  127 (178)
Q Consensus        67 ~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~  127 (178)
                      . +.+...+..+..++.+.|++++|.+.++.+.+... .+..++..+...|.+.|++++|.
T Consensus       173 ~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~  231 (450)
T 2y4t_A          173 C-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKN-DNTEAFYKISTLYYQLGDHELSL  231 (450)
T ss_dssp             C-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHC-SCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             C-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHH
Confidence            4 34667888889999999999999999999988753 46889999999999999999986

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.47  E-value=1.8e-11  Score=80.81  Aligned_cols=152  Identities=9%  Similarity=0.018  Sum_probs=133.4

Q ss_pred             hhHHHHHHHHHHhcCChhHHHHHhccCCC---CChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHHh
Q 036068            6 VISWTAIVSRYINRGQVDIARQCFDQMPE---RDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTAR   82 (178)
Q Consensus         6 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~   82 (178)
                      ...|..+...+...|++++|.+.++++.+   .+...+..+...+...|++++|.+.+++..+.. +.+...+..+...+
T Consensus         8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~   86 (186)
T 3as5_A            8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTY   86 (186)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence            44578889999999999999999999875   377788899999999999999999999988764 34677888899999


Q ss_pred             ccccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHhcCChhhhc-----------cchhhHHHHHHHHHhcCChhHHHH
Q 036068           83 ANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ-----------KDKFSWTTMIVGLAISGNGDKALD  151 (178)
Q Consensus        83 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~-----------~~~~~~~~li~~~~~~~~~~~a~~  151 (178)
                      ...|++++|.+.++...+... .+...+..+...+.+.|++++|.           .+...+..+...+...|++++|.+
T Consensus        87 ~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~  165 (186)
T 3as5_A           87 VQVQKYDLAVPLLIKVAEANP-INFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALP  165 (186)
T ss_dssp             HHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHhcCHHHHHHHHHHHHhcCc-HhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHH
Confidence            999999999999999988754 46788889999999999999987           356788999999999999999999


Q ss_pred             HHHHHHHc
Q 036068          152 MFSQMLRA  159 (178)
Q Consensus       152 ~~~~m~~~  159 (178)
                      .+++..+.
T Consensus       166 ~~~~~~~~  173 (186)
T 3as5_A          166 HFKKANEL  173 (186)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHc
Confidence            99998864

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=99.47  E-value=1e-11  Score=91.87  Aligned_cols=85  Identities=13%  Similarity=-0.042  Sum_probs=40.6

Q ss_pred             HHHHHHHHHhccccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHhcCChhhhc-----------cchhhHHHHHHHHH
Q 036068           73 FTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ-----------KDKFSWTTMIVGLA  141 (178)
Q Consensus        73 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~-----------~~~~~~~~li~~~~  141 (178)
                      .++..+..++.+.|++++|.+.++.+.+..+. ++.++..+...+.+.|++++|.           .+..+|+.+...+.
T Consensus       238 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~  316 (388)
T 1w3b_A          238 VVHGNLACVYYEQGLIDLAIDTYRRAIELQPH-FPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKR  316 (388)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSS-CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHH
Confidence            34444444444444444444444444443321 2334444444455555544444           23445555555555


Q ss_pred             hcCChhHHHHHHHHHHH
Q 036068          142 ISGNGDKALDMFSQMLR  158 (178)
Q Consensus       142 ~~~~~~~a~~~~~~m~~  158 (178)
                      +.|++++|.+.++++.+
T Consensus       317 ~~g~~~~A~~~~~~al~  333 (388)
T 1w3b_A          317 EQGNIEEAVRLYRKALE  333 (388)
T ss_dssp             TTTCHHHHHHHHHHHTT
T ss_pred             HcCCHHHHHHHHHHHHh
Confidence            55555555555555544

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=99.45  E-value=3.5e-14  Score=106.34  Aligned_cols=155  Identities=13%  Similarity=0.119  Sum_probs=51.9

Q ss_pred             hhHHHHHHHHHHhcCChhHHHHHhccCCCCChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHHhccc
Q 036068            6 VISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANL   85 (178)
Q Consensus         6 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~   85 (178)
                      +.+|..+..++.+.|++++|++.|.+  .+|..+|..++.++...|++++|.+.++...+.  .+++.+.+.++.+|.+.
T Consensus        32 ~~vWs~La~A~l~~g~~~eAIdsfik--a~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~--~~~~~i~~~Li~~Y~Kl  107 (449)
T 1b89_A           32 PAVWSQLAKAQLQKGMVKEAIDSYIK--ADDPSSYMEVVQAANTSGNWEELVKYLQMARKK--ARESYVETELIFALAKT  107 (449)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHc--CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CccchhHHHHHHHHHHh
Confidence            35899999999999999999999975  467779999999999999999999977766553  45678888999999999


Q ss_pred             cchhhHHHHHHHHHHhCcccchHHHHHHHHHHHhcCChhhhc---cchhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCC
Q 036068           86 RALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ---KDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIK  162 (178)
Q Consensus        86 ~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~  162 (178)
                      |+++++.++++       .|+..+|+.+...|...|.+++|.   .....|..++.++.+.|++++|.+.++++      
T Consensus       108 g~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a~n~~~LA~~L~~Lg~yq~AVea~~KA------  174 (449)
T 1b89_A          108 NRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKA------  174 (449)
T ss_dssp             -CHHHHTTTTT-------CC----------------CTTTHHHHHHHTTCHHHHHHHHHTTTCHHHHHHHHHHH------
T ss_pred             CCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhhHHHHHHHHHHhccHHHHHHHHHHc------
Confidence            99999888874       366779999999999999999998   56678999999999999999999999987      


Q ss_pred             CChhHHHHHHhhhhc
Q 036068          163 PDEVAYVGVLSACTH  177 (178)
Q Consensus       163 p~~~t~~~li~a~~~  177 (178)
                      -+..+|..++.+|..
T Consensus       175 ~~~~~Wk~v~~aCv~  189 (449)
T 1b89_A          175 NSTRTWKEVCFACVD  189 (449)
T ss_dssp             TCHHHHHHHHHHHHH
T ss_pred             CCchhHHHHHHHHHH
Confidence            367888888888853

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.45  E-value=6.6e-12  Score=92.13  Aligned_cols=167  Identities=10%  Similarity=0.075  Sum_probs=99.2

Q ss_pred             hhHHHHHHHHHHhcCChhHHHHHhccCCC---CChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHHh
Q 036068            6 VISWTAIVSRYINRGQVDIARQCFDQMPE---RDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTAR   82 (178)
Q Consensus         6 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~   82 (178)
                      ...|..+...+.+.|++++|.+.|+++.+   .+...|..+...|.+.|++++|.+.|++..+.. +.+..++..+..++
T Consensus        65 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~  143 (365)
T 4eqf_A           65 WPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAVSY  143 (365)
T ss_dssp             CTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence            33455555555555555555555555432   244455555555555555555555555544432 12344444444445


Q ss_pred             ccccchhhHHH--------------------------------------------HHHHHHHhCcc-cchHHHHHHHHHH
Q 036068           83 ANLRALDLGEW--------------------------------------------IKTYIDKNKVK-NDIFAGNALIDMY  117 (178)
Q Consensus        83 ~~~~~~~~a~~--------------------------------------------~~~~m~~~~~~-~~~~~~~~ll~~~  117 (178)
                      .+.|++++|..                                            +++.+.+..+. .++.++..+...|
T Consensus       144 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~  223 (365)
T 4eqf_A          144 TNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLF  223 (365)
T ss_dssp             HHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHH
T ss_pred             HccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHH
Confidence            55555444444                                            44444444322 1567788888888


Q ss_pred             HhcCChhhhc-----------cchhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC-hhHHHHHHhhh
Q 036068          118 CICADVEKAQ-----------KDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPD-EVAYVGVLSAC  175 (178)
Q Consensus       118 ~~~~~~~~a~-----------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~t~~~li~a~  175 (178)
                      .+.|++++|.           .+..+|+.+...+.+.|++++|.+.|++..+.  .|+ ...+..+-.+|
T Consensus       224 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~  291 (365)
T 4eqf_A          224 HLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEI--QPGFIRSRYNLGISC  291 (365)
T ss_dssp             HHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred             HHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCchHHHHHHHHHH
Confidence            8888888887           35778888888888899999999999888875  344 45555554443

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.45  E-value=1.2e-11  Score=82.26  Aligned_cols=160  Identities=11%  Similarity=0.051  Sum_probs=137.9

Q ss_pred             chhHHHHHHHHHHhcCChhHHHHHhccCCC---CChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHH
Q 036068            5 DVISWTAIVSRYINRGQVDIARQCFDQMPE---RDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTA   81 (178)
Q Consensus         5 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~   81 (178)
                      ++.+|..+-..+.+.|++++|.+.|++..+   .+...|..+...|.+.|++++|...+++..... .-+...+..+...
T Consensus         4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~   82 (184)
T 3vtx_A            4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGSA   82 (184)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHHH
Confidence            567899999999999999999999998753   378889999999999999999999999987765 3356677778888


Q ss_pred             hccccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHhcCChhhhc-----------cchhhHHHHHHHHHhcCChhHHH
Q 036068           82 RANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ-----------KDKFSWTTMIVGLAISGNGDKAL  150 (178)
Q Consensus        82 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~-----------~~~~~~~~li~~~~~~~~~~~a~  150 (178)
                      +...++++.+...+....+..+ .+...+..+-..|.+.|++++|.           .+...|..+...+.+.|++++|.
T Consensus        83 ~~~~~~~~~a~~~~~~a~~~~~-~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~  161 (184)
T 3vtx_A           83 NFMIDEKQAAIDALQRAIALNT-VYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEAV  161 (184)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHhCc-cchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHHH
Confidence            8999999999999999888764 36788899999999999999998           36778999999999999999999


Q ss_pred             HHHHHHHHcCCCCChhHH
Q 036068          151 DMFSQMLRASIKPDEVAY  168 (178)
Q Consensus       151 ~~~~~m~~~g~~p~~~t~  168 (178)
                      +.|++.++.  .|+...|
T Consensus       162 ~~~~~al~~--~p~~a~~  177 (184)
T 3vtx_A          162 KYFKKALEK--EEKKAKY  177 (184)
T ss_dssp             HHHHHHHHT--THHHHHH
T ss_pred             HHHHHHHhC--CccCHHH
Confidence            999999874  4655444

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.44  E-value=6.6e-12  Score=87.43  Aligned_cols=167  Identities=11%  Similarity=0.029  Sum_probs=141.9

Q ss_pred             cchhHHHHHHHHHHhcCChhHHHHHhccCCC---CChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCC-cHHHHHHHH
Q 036068            4 KDVISWTAIVSRYINRGQVDIARQCFDQMPE---RDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMG-DEFTIVSIL   79 (178)
Q Consensus         4 p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~-~~~~~~~ll   79 (178)
                      .+...|..+...+.+.|++++|.+.|++..+   .+...+..+...|...|++++|.+.|++..+.+..| +...+..+.
T Consensus        69 ~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la  148 (252)
T 2ho1_A           69 SSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLG  148 (252)
T ss_dssp             TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHH
T ss_pred             ChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHH
Confidence            4667889999999999999999999998753   377889999999999999999999999998743344 567888889


Q ss_pred             HHhccccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHhcCChhhhc-----------cchhhHHHHHHHHHhcCChhH
Q 036068           80 TARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ-----------KDKFSWTTMIVGLAISGNGDK  148 (178)
Q Consensus        80 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~-----------~~~~~~~~li~~~~~~~~~~~  148 (178)
                      .++.+.|++++|.+.++...+... .+...+..+...|.+.|++++|.           .+...+..+...+...|++++
T Consensus       149 ~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  227 (252)
T 2ho1_A          149 LVSLQMKKPAQAKEYFEKSLRLNR-NQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDT  227 (252)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHH
Confidence            999999999999999999988764 35788999999999999999997           356778888899999999999


Q ss_pred             HHHHHHHHHHcCCCCChhHHHHHHh
Q 036068          149 ALDMFSQMLRASIKPDEVAYVGVLS  173 (178)
Q Consensus       149 a~~~~~~m~~~g~~p~~~t~~~li~  173 (178)
                      |.++++++.+.  .|+...+..++.
T Consensus       228 A~~~~~~~~~~--~p~~~~~~~~l~  250 (252)
T 2ho1_A          228 AASYGLQLKRL--YPGSLEYQEFQA  250 (252)
T ss_dssp             HHHHHHHHHHH--CTTSHHHHHHHT
T ss_pred             HHHHHHHHHHH--CCCCHHHHHHHh
Confidence            99999999875  576666555543

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.44  E-value=2.4e-11  Score=83.85  Aligned_cols=158  Identities=16%  Similarity=0.136  Sum_probs=122.1

Q ss_pred             cchhHHHHHHHHHHhcCChhHHHHHhccCCC---CChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHH
Q 036068            4 KDVISWTAIVSRYINRGQVDIARQCFDQMPE---RDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILT   80 (178)
Q Consensus         4 p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~   80 (178)
                      .+...|..+...+.+.|++++|.+.|++..+   .+...+..+...+...|++++|.+.+++..+.. +.+...+..+..
T Consensus        55 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~  133 (243)
T 2q7f_A           55 EDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGT  133 (243)
T ss_dssp             TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence            4566777788888888888888888887643   366777888888888888888888888877764 335667777888


Q ss_pred             HhccccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHhcCChhhhc-----------cchhhHHHHHHHHHhcCChhHH
Q 036068           81 ARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ-----------KDKFSWTTMIVGLAISGNGDKA  149 (178)
Q Consensus        81 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~-----------~~~~~~~~li~~~~~~~~~~~a  149 (178)
                      .+.+.|++++|...++...+... .+...+..+...+.+.|++++|.           .+..+|..+...+.+.|++++|
T Consensus       134 ~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A  212 (243)
T 2q7f_A          134 VLVKLEQPKLALPYLQRAVELNE-NDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKA  212 (243)
T ss_dssp             HHHHTSCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHH
T ss_pred             HHHHhccHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHH
Confidence            88888888888888888877653 35677788888888888888876           3566778888888888888888


Q ss_pred             HHHHHHHHHcCCCCCh
Q 036068          150 LDMFSQMLRASIKPDE  165 (178)
Q Consensus       150 ~~~~~~m~~~g~~p~~  165 (178)
                      .+.+++..+.  .|+.
T Consensus       213 ~~~~~~~~~~--~p~~  226 (243)
T 2q7f_A          213 LEMLDKAIDI--QPDH  226 (243)
T ss_dssp             HHHHHHHHHH--CTTC
T ss_pred             HHHHHHHHcc--Ccch
Confidence            8888888764  3544

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=99.42  E-value=7e-11  Score=84.80  Aligned_cols=154  Identities=14%  Similarity=0.079  Sum_probs=106.0

Q ss_pred             chhHHHHHHHHHHhcCChhHHHHHhccCCCCChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHH---HHHHHHH
Q 036068            5 DVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFT---IVSILTA   81 (178)
Q Consensus         5 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~---~~~ll~~   81 (178)
                      ++..+..+...+.+.|++++|.+.+++  ..+...+..+...|.+.|++++|.+.|+++.+..  |+...   ...++..
T Consensus       100 ~~~~~~~la~~~~~~g~~~~Al~~l~~--~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~l~~a~~~l  175 (291)
T 3mkr_A          100 NTTFLLMAASIYFYDQNPDAALRTLHQ--GDSLECMAMTVQILLKLDRLDLARKELKKMQDQD--EDATLTQLATAWVSL  175 (291)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHTT--CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--cCcHHHHHHHHHHHH
Confidence            344556666777777888888877777  3466777777778888888888888888877664  44321   1223344


Q ss_pred             hccccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHhcCChhhhc-----------cchhhHHHHHHHHHhcCChhH-H
Q 036068           82 RANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ-----------KDKFSWTTMIVGLAISGNGDK-A  149 (178)
Q Consensus        82 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~-----------~~~~~~~~li~~~~~~~~~~~-a  149 (178)
                      +...|++++|..+|+.+.+.. +.++..++.+...+.+.|++++|.           .+..++..++..+...|+.++ +
T Consensus       176 ~~~~~~~~eA~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~~~eaa  254 (291)
T 3mkr_A          176 AAGGEKLQDAYYIFQEMADKC-SPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVT  254 (291)
T ss_dssp             HHCTTHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHH
T ss_pred             HhCchHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCHHHH
Confidence            445577888888888877764 346777777888888888888876           256677777777777787765 5


Q ss_pred             HHHHHHHHHcCCCCCh
Q 036068          150 LDMFSQMLRASIKPDE  165 (178)
Q Consensus       150 ~~~~~~m~~~g~~p~~  165 (178)
                      .++++++++.  .|+.
T Consensus       255 ~~~~~~~~~~--~P~~  268 (291)
T 3mkr_A          255 NRYLSQLKDA--HRSH  268 (291)
T ss_dssp             HHHHHHHHHH--CTTC
T ss_pred             HHHHHHHHHh--CCCC
Confidence            6777777754  3544

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=99.42  E-value=1.6e-11  Score=88.12  Aligned_cols=164  Identities=9%  Similarity=0.039  Sum_probs=107.7

Q ss_pred             CcchhHHHHHHHHHHhcCChhHHHHHhccCC----CC-ChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHH
Q 036068            3 NKDVISWTAIVSRYINRGQVDIARQCFDQMP----ER-DYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVS   77 (178)
Q Consensus         3 ~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~----~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~   77 (178)
                      +|+..++..+...+.+.++.++|.+.++++.    .| +...+..+-..+...|++++|.+.+++      ..+...+..
T Consensus        62 ~~~~~a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~  135 (291)
T 3mkr_A           62 APELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAM  135 (291)
T ss_dssp             CHHHHHHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHH
T ss_pred             ChhHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHH
Confidence            3566667777777777777777777777652    24 344455555677777777777777766      345667777


Q ss_pred             HHHHhccccchhhHHHHHHHHHHhCcccch-HHHHHHHHHHHhcCChhhhc-----------cchhhHHHHHHHHHhcCC
Q 036068           78 ILTARANLRALDLGEWIKTYIDKNKVKNDI-FAGNALIDMYCICADVEKAQ-----------KDKFSWTTMIVGLAISGN  145 (178)
Q Consensus        78 ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~-~~~~~ll~~~~~~~~~~~a~-----------~~~~~~~~li~~~~~~~~  145 (178)
                      +...+.+.|++++|.+.++.+.+..+.... ......+..+...|++++|.           .+...|+.+...+.+.|+
T Consensus       136 l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~  215 (291)
T 3mkr_A          136 TVQILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGR  215 (291)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCC
Confidence            777788888888888888887776522110 11122333344457777776           367778888888888888


Q ss_pred             hhHHHHHHHHHHHcCCCC-ChhHHHHHHhh
Q 036068          146 GDKALDMFSQMLRASIKP-DEVAYVGVLSA  174 (178)
Q Consensus       146 ~~~a~~~~~~m~~~g~~p-~~~t~~~li~a  174 (178)
                      +++|.+.|++.++.  .| +..++..+...
T Consensus       216 ~~eA~~~l~~al~~--~p~~~~~l~~l~~~  243 (291)
T 3mkr_A          216 WEAAEGVLQEALDK--DSGHPETLINLVVL  243 (291)
T ss_dssp             HHHHHHHHHHHHHH--CTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHh--CCCCHHHHHHHHHH
Confidence            88888888888764  34 44555555433

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.42  E-value=5.9e-11  Score=80.80  Aligned_cols=167  Identities=14%  Similarity=0.017  Sum_probs=140.1

Q ss_pred             cchhHHHHHHHHHHhcCChhHHHHHhccCCC---CChhHHHHHHHHHhhc-CChhHHHHHHHHhHhCCCCCc-HHHHHHH
Q 036068            4 KDVISWTAIVSRYINRGQVDIARQCFDQMPE---RDYVLWTAMIDGYLRV-NRFREALTLFQEMQTSNIMGD-EFTIVSI   78 (178)
Q Consensus         4 p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~-~~~~~a~~~~~~m~~~~~~~~-~~~~~~l   78 (178)
                      .+...|..+...+...|++++|.+.+++..+   .+...+..+...+... |++++|...+++..+.+..|+ ...+..+
T Consensus        40 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l  119 (225)
T 2vq2_A           40 KNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNK  119 (225)
T ss_dssp             TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHH
T ss_pred             cchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHH
Confidence            4567889999999999999999999998753   4777899999999999 999999999999988433333 6788889


Q ss_pred             HHHhccccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHhcCChhhhc----------c--chhhHHHHHHHHHhcCCh
Q 036068           79 LTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ----------K--DKFSWTTMIVGLAISGNG  146 (178)
Q Consensus        79 l~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~----------~--~~~~~~~li~~~~~~~~~  146 (178)
                      ..++.+.|++++|...++...+.... +...+..+...+.+.|++++|.          |  +...+..+...+...|+.
T Consensus       120 ~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  198 (225)
T 2vq2_A          120 GICSAKQGQFGLAEAYLKRSLAAQPQ-FPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNA  198 (225)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCC-CchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcH
Confidence            99999999999999999999887643 5788999999999999999987          4  456677777888999999


Q ss_pred             hHHHHHHHHHHHcCCCCChhHHHHHHh
Q 036068          147 DKALDMFSQMLRASIKPDEVAYVGVLS  173 (178)
Q Consensus       147 ~~a~~~~~~m~~~g~~p~~~t~~~li~  173 (178)
                      +++..+++.+.+.  .|+...+..++.
T Consensus       199 ~~a~~~~~~~~~~--~p~~~~~~~~l~  223 (225)
T 2vq2_A          199 QAAYEYEAQLQAN--FPYSEELQTVLT  223 (225)
T ss_dssp             HHHHHHHHHHHHH--CTTCHHHHHHHC
T ss_pred             HHHHHHHHHHHHh--CCCCHHHHHHhc
Confidence            9999999998864  577766665553

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.39  E-value=1.1e-11  Score=85.62  Aligned_cols=170  Identities=12%  Similarity=0.031  Sum_probs=124.1

Q ss_pred             CcchhHHHHHHHHHHhcCChhHHHHHhccCCC---CChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHH
Q 036068            3 NKDVISWTAIVSRYINRGQVDIARQCFDQMPE---RDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSIL   79 (178)
Q Consensus         3 ~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll   79 (178)
                      ..+...|..+...+.+.|++++|...|++..+   .+...+..+...+...|++++|.+.|++..+.. +.+...+..+.
T Consensus        20 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la   98 (243)
T 2q7f_A           20 HMASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAG   98 (243)
T ss_dssp             ----------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHH
Confidence            45566788889999999999999999998753   377888899999999999999999999988764 34678888999


Q ss_pred             HHhccccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHhcCChhhhc-----------cchhhHHHHHHHHHhcCChhH
Q 036068           80 TARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ-----------KDKFSWTTMIVGLAISGNGDK  148 (178)
Q Consensus        80 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~-----------~~~~~~~~li~~~~~~~~~~~  148 (178)
                      ..+.+.|++++|.+.++...+... .+...+..+...+.+.|++++|.           .+...+..+...+.+.|++++
T Consensus        99 ~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  177 (243)
T 2q7f_A           99 NVYVVKEMYKEAKDMFEKALRAGM-ENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDE  177 (243)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHTC-CSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHH
T ss_pred             HHHHHhccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHH
Confidence            999999999999999999988764 35778999999999999999997           367788889999999999999


Q ss_pred             HHHHHHHHHHcCCCCChhHHHHHHhhh
Q 036068          149 ALDMFSQMLRASIKPDEVAYVGVLSAC  175 (178)
Q Consensus       149 a~~~~~~m~~~g~~p~~~t~~~li~a~  175 (178)
                      |.+.+++..+.. +.+...+..+...|
T Consensus       178 A~~~~~~~~~~~-~~~~~~~~~la~~~  203 (243)
T 2q7f_A          178 ALSQFAAVTEQD-PGHADAFYNAGVTY  203 (243)
T ss_dssp             HHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhC-cccHHHHHHHHHHH
Confidence            999999998752 23455555555444

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=99.38  E-value=7.4e-11  Score=86.31  Aligned_cols=169  Identities=12%  Similarity=0.078  Sum_probs=114.2

Q ss_pred             chhHHHHHHHHHHhcCChhHHHHHhccCCC---CChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHH
Q 036068            5 DVISWTAIVSRYINRGQVDIARQCFDQMPE---RDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTA   81 (178)
Q Consensus         5 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~   81 (178)
                      +...|..+...+.+.|++++|...|+++.+   .+...|..+...+.+.|++++|.+.|++..+.. +.+..++..+..+
T Consensus        63 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~  141 (368)
T 1fch_A           63 DHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVS  141 (368)
T ss_dssp             TCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHH
Confidence            345566677777777777777777776642   355667777777777777777777777776654 2355666667777


Q ss_pred             hccccchhhHHHHHHHHHHhCc-----------------------------------------------cc---chHHHH
Q 036068           82 RANLRALDLGEWIKTYIDKNKV-----------------------------------------------KN---DIFAGN  111 (178)
Q Consensus        82 ~~~~~~~~~a~~~~~~m~~~~~-----------------------------------------------~~---~~~~~~  111 (178)
                      +.+.|++++|...++.+.+...                                               .|   +..++.
T Consensus       142 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~  221 (368)
T 1fch_A          142 FTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQC  221 (368)
T ss_dssp             HHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHH
Confidence            7777777666666665554321                                               11   466777


Q ss_pred             HHHHHHHhcCChhhhc-----------cchhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhHHHHHHhhh
Q 036068          112 ALIDMYCICADVEKAQ-----------KDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC  175 (178)
Q Consensus       112 ~ll~~~~~~~~~~~a~-----------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~a~  175 (178)
                      .+...|.+.|++++|.           .+...|..+...+.+.|++++|.+.|++..+.. +.+...+..+-..|
T Consensus       222 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~  295 (368)
T 1fch_A          222 GLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQ-PGYIRSRYNLGISC  295 (368)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHH
Confidence            8888888888888887           256778888888888888888888888887642 22344554444443

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=99.38  E-value=6.6e-12  Score=94.13  Aligned_cols=136  Identities=9%  Similarity=-0.008  Sum_probs=76.4

Q ss_pred             chhHHHHHHHHHHhcCChhHHHHHhccCCCCChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHHhcc
Q 036068            5 DVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARAN   84 (178)
Q Consensus         5 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~   84 (178)
                      ++.+.+.++.+|.+.|+++++.++++   .|+..+|+.+...|...|++++|...|.++         ..|..+..++.+
T Consensus        93 ~~~i~~~Li~~Y~Klg~l~e~e~f~~---~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n~~~LA~~L~~  160 (449)
T 1b89_A           93 ESYVETELIFALAKTNRLAELEEFIN---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVH  160 (449)
T ss_dssp             ----------------CHHHHTTTTT---CC----------------CTTTHHHHHHHT---------TCHHHHHHHHHT
T ss_pred             cchhHHHHHHHHHHhCCHHHHHHHHc---CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------hhHHHHHHHHHH
Confidence            34556667777777777777666664   356667777777777777777777777765         367777778888


Q ss_pred             ccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHhcCChhhhc-------cchhhHHHHHHHHHhcCChhHHHHHHHHHH
Q 036068           85 LRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ-------KDKFSWTTMIVGLAISGNGDKALDMFSQML  157 (178)
Q Consensus        85 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~-------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~  157 (178)
                      .|++++|.+.+...      .++.+|..++.++...|+++.|.       .+..-...++..|.+.|++++|..+++..+
T Consensus       161 Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~~~ad~l~~lv~~Yek~G~~eEai~lLe~aL  234 (449)
T 1b89_A          161 LGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAAL  234 (449)
T ss_dssp             TTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred             hccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHHhCHhhHHHHHHHHHHCCCHHHHHHHHHHHh
Confidence            88888877777766      26778888888888888888887       122223457778888888888888888876


Q ss_pred             H
Q 036068          158 R  158 (178)
Q Consensus       158 ~  158 (178)
                      .
T Consensus       235 ~  235 (449)
T 1b89_A          235 G  235 (449)
T ss_dssp             T
T ss_pred             C
Confidence            4

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.37  E-value=2e-11  Score=89.50  Aligned_cols=155  Identities=13%  Similarity=-0.017  Sum_probs=125.3

Q ss_pred             cchhHHHHHHHHHHhcCChhHHHHHhccCCC---CChhHHHHHHHHHhhcCChhHHHHHHHHhHhCC-------------
Q 036068            4 KDVISWTAIVSRYINRGQVDIARQCFDQMPE---RDYVLWTAMIDGYLRVNRFREALTLFQEMQTSN-------------   67 (178)
Q Consensus         4 p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~-------------   67 (178)
                      .+..+|..+...+.+.|++++|.+.|++..+   .+...|..+...|...|++++|...|++..+..             
T Consensus        97 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~  176 (365)
T 4eqf_A           97 GDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGS  176 (365)
T ss_dssp             TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC-------
T ss_pred             CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHhCccchHHHhhhccc
Confidence            4566777788888888888888888877653   356677777777777777777777777764421             


Q ss_pred             -----------------------------CCC---cHHHHHHHHHHhccccchhhHHHHHHHHHHhCcccchHHHHHHHH
Q 036068           68 -----------------------------IMG---DEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALID  115 (178)
Q Consensus        68 -----------------------------~~~---~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~  115 (178)
                                                   ..|   +..++..+...+.+.|++++|...++...+..+ .+..+|..+..
T Consensus       177 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~  255 (365)
T 4eqf_A          177 PGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRP-EDYSLWNRLGA  255 (365)
T ss_dssp             ------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred             hHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHH
Confidence                                         012   577888999999999999999999999998764 36889999999


Q ss_pred             HHHhcCChhhhc----------c-chhhHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 036068          116 MYCICADVEKAQ----------K-DKFSWTTMIVGLAISGNGDKALDMFSQMLRA  159 (178)
Q Consensus       116 ~~~~~~~~~~a~----------~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~  159 (178)
                      .|.+.|++++|.          | +..+|..+...|.+.|++++|.+.|++..+.
T Consensus       256 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~  310 (365)
T 4eqf_A          256 TLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAVSNFLTALSL  310 (365)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence            999999999998          3 5788999999999999999999999999864

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=99.36  E-value=7.5e-11  Score=84.81  Aligned_cols=152  Identities=14%  Similarity=0.020  Sum_probs=83.6

Q ss_pred             hhHHHHHHHHHHhcCChhHHHHHhccCCC---CChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHHh
Q 036068            6 VISWTAIVSRYINRGQVDIARQCFDQMPE---RDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTAR   82 (178)
Q Consensus         6 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~   82 (178)
                      ...|..+...+...|++++|.+.|++..+   .+...+..+...|...|++++|.+.|++..+.. +.+...+..+...+
T Consensus       125 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~  203 (330)
T 3hym_B          125 GPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIA-PEDPFVMHEVGVVA  203 (330)
T ss_dssp             THHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-CCChHHHHHHHHHH
Confidence            34455555555555555555555554432   133444455555555666666666666555543 22345555566666


Q ss_pred             ccccchhhHHHHHHHHHHhC--------cccchHHHHHHHHHHHhcCChhhhc-----------cchhhHHHHHHHHHhc
Q 036068           83 ANLRALDLGEWIKTYIDKNK--------VKNDIFAGNALIDMYCICADVEKAQ-----------KDKFSWTTMIVGLAIS  143 (178)
Q Consensus        83 ~~~~~~~~a~~~~~~m~~~~--------~~~~~~~~~~ll~~~~~~~~~~~a~-----------~~~~~~~~li~~~~~~  143 (178)
                      .+.|++++|...++...+..        .+....++..+...|.+.|++++|.           .+...|..+...+.+.
T Consensus       204 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~  283 (330)
T 3hym_B          204 FQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLM  283 (330)
T ss_dssp             HHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHH
T ss_pred             HHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHh
Confidence            66666666666665555431        1223455666666666666666655           2455556666666666


Q ss_pred             CChhHHHHHHHHHHH
Q 036068          144 GNGDKALDMFSQMLR  158 (178)
Q Consensus       144 ~~~~~a~~~~~~m~~  158 (178)
                      |++++|.+.|++..+
T Consensus       284 g~~~~A~~~~~~al~  298 (330)
T 3hym_B          284 GNFENAVDYFHTALG  298 (330)
T ss_dssp             TCHHHHHHHHHTTTT
T ss_pred             ccHHHHHHHHHHHHc
Confidence            666666666666554

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=99.35  E-value=9.3e-11  Score=85.78  Aligned_cols=156  Identities=14%  Similarity=0.013  Sum_probs=128.7

Q ss_pred             CcchhHHHHHHHHHHhcCChhHHHHHhccCCC---CChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCC-----------
Q 036068            3 NKDVISWTAIVSRYINRGQVDIARQCFDQMPE---RDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNI-----------   68 (178)
Q Consensus         3 ~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~-----------   68 (178)
                      +.+..+|..+...+.+.|++++|.+.|++..+   .+...+..+...|...|++++|.+.|+++.+...           
T Consensus        95 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~  174 (368)
T 1fch_A           95 PKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEE  174 (368)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC----
T ss_pred             CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHH
Confidence            34566788888888888998888888887653   3677788888888888888888888877654321           


Q ss_pred             ------------------------------------CC---cHHHHHHHHHHhccccchhhHHHHHHHHHHhCcccchHH
Q 036068           69 ------------------------------------MG---DEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFA  109 (178)
Q Consensus        69 ------------------------------------~~---~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~  109 (178)
                                                          .|   +..++..+...+.+.|++++|...++...+... .+..+
T Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~-~~~~~  253 (368)
T 1fch_A          175 GAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRP-NDYLL  253 (368)
T ss_dssp             -----------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHH
T ss_pred             HhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-CCHHH
Confidence                                                12   467888899999999999999999999988753 35788


Q ss_pred             HHHHHHHHHhcCChhhhc-----------cchhhHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 036068          110 GNALIDMYCICADVEKAQ-----------KDKFSWTTMIVGLAISGNGDKALDMFSQMLRA  159 (178)
Q Consensus       110 ~~~ll~~~~~~~~~~~a~-----------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~  159 (178)
                      +..+...|.+.|++++|.           .+...+..+...+.+.|++++|.+.|++..+.
T Consensus       254 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~  314 (368)
T 1fch_A          254 WNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNM  314 (368)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence            999999999999999997           35778999999999999999999999999864

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.33  E-value=3e-11  Score=82.98  Aligned_cols=152  Identities=13%  Similarity=0.047  Sum_probs=120.3

Q ss_pred             CcchhHHHHHHHHHHhcCChhHHHHHhccCCC--C-ChhHHHHHHHHHhhc-----------CChhHHHHHHHHhHhCCC
Q 036068            3 NKDVISWTAIVSRYINRGQVDIARQCFDQMPE--R-DYVLWTAMIDGYLRV-----------NRFREALTLFQEMQTSNI   68 (178)
Q Consensus         3 ~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~--~-~~~~~~~li~~~~~~-----------~~~~~a~~~~~~m~~~~~   68 (178)
                      +.++..|..+...+.+.|++++|...|++..+  | +...+..+-..+.+.           |++++|...|++..+.. 
T Consensus        36 p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-  114 (217)
T 2pl2_A           36 PQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVN-  114 (217)
T ss_dssp             SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhC-
Confidence            45677889999999999999999999998753  4 677888899999999           99999999999988864 


Q ss_pred             CCcHHHHHHHHHHhccccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHhcCChhhhc----------c-chhhHHHHH
Q 036068           69 MGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ----------K-DKFSWTTMI  137 (178)
Q Consensus        69 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~----------~-~~~~~~~li  137 (178)
                      +-+...+..+-.++.+.|++++|...++...+..  .++..+..+-..|...|++++|.          | +...+..+.
T Consensus       115 P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la  192 (217)
T 2pl2_A          115 PRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSALAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYA  192 (217)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred             cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHH
Confidence            2356788889999999999999999999999988  67889999999999999999997          3 677888899


Q ss_pred             HHHHhcCChhHHHHHHHHHH
Q 036068          138 VGLAISGNGDKALDMFSQML  157 (178)
Q Consensus       138 ~~~~~~~~~~~a~~~~~~m~  157 (178)
                      ..+.+.|++++|.+.|++..
T Consensus       193 ~~~~~~g~~~~A~~~~~~~~  212 (217)
T 2pl2_A          193 SALLLKGKAEEAARAAALEH  212 (217)
T ss_dssp             HHHTC---------------
T ss_pred             HHHHHccCHHHHHHHHHHHh
Confidence            99999999999999998754

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=99.33  E-value=2.5e-10  Score=82.02  Aligned_cols=153  Identities=15%  Similarity=0.078  Sum_probs=95.3

Q ss_pred             chhHHHHHHHHHHhcC-ChhHHHHHhccCCC---CChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHH
Q 036068            5 DVISWTAIVSRYINRG-QVDIARQCFDQMPE---RDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILT   80 (178)
Q Consensus         5 ~~~~~~~li~~~~~~~-~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~   80 (178)
                      +...|..+...+...| ++++|.+.|++..+   .+...|..+...+...|++++|.+.|++..+.. +.+...+..+..
T Consensus        89 ~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~  167 (330)
T 3hym_B           89 NPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGL  167 (330)
T ss_dssp             STHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHH
Confidence            4455666666666666 66666666665432   245566666666666666666666666665543 223445555666


Q ss_pred             HhccccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHhcCChhhhc--------------------cchhhHHHHHHHH
Q 036068           81 ARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ--------------------KDKFSWTTMIVGL  140 (178)
Q Consensus        81 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~--------------------~~~~~~~~li~~~  140 (178)
                      .+...|++++|.+.++...+... .+..++..+...|.+.|++++|.                    .+...|..+...+
T Consensus       168 ~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~  246 (330)
T 3hym_B          168 EYGLTNNSKLAERFFSQALSIAP-EDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVC  246 (330)
T ss_dssp             HHHHTTCHHHHHHHHHHHHTTCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHH
T ss_pred             HHHHHhhHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHH
Confidence            66666777777777766665542 24566666666677777776665                    0134666667777


Q ss_pred             HhcCChhHHHHHHHHHHHc
Q 036068          141 AISGNGDKALDMFSQMLRA  159 (178)
Q Consensus       141 ~~~~~~~~a~~~~~~m~~~  159 (178)
                      .+.|++++|.+.+++..+.
T Consensus       247 ~~~g~~~~A~~~~~~a~~~  265 (330)
T 3hym_B          247 RKLKKYAEALDYHRQALVL  265 (330)
T ss_dssp             HHTTCHHHHHHHHHHHHHH
T ss_pred             HHhcCHHHHHHHHHHHHhh
Confidence            7777777777777776654

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.32  E-value=1.3e-10  Score=80.67  Aligned_cols=153  Identities=9%  Similarity=0.003  Sum_probs=93.9

Q ss_pred             chhHHHHHHHHHHhcCChhHHHHHhccCCC--C-C-------hhHHHHHHHHHhhcCChhHHHHHHHHhHhCC-------
Q 036068            5 DVISWTAIVSRYINRGQVDIARQCFDQMPE--R-D-------YVLWTAMIDGYLRVNRFREALTLFQEMQTSN-------   67 (178)
Q Consensus         5 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~--~-~-------~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~-------   67 (178)
                      +...|..+...+...|++++|.+.+++..+  | +       ...|..+...+.+.|++++|...|++..+..       
T Consensus        37 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~  116 (258)
T 3uq3_A           37 DITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRTADILT  116 (258)
T ss_dssp             CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHH
T ss_pred             cHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCchhHHHH
Confidence            345566666666666666666666665542  1 1       4566666666666777777776666665521       


Q ss_pred             -----------------C-CCcHHHHHHHHHHhccccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHhcCChhhhc--
Q 036068           68 -----------------I-MGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ--  127 (178)
Q Consensus        68 -----------------~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~--  127 (178)
                                       . +.+...+..+...+.+.|++++|...++...+.... +..++..+...|.+.|++++|.  
T Consensus       117 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~  195 (258)
T 3uq3_A          117 KLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPE-DARGYSNRAAALAKLMSFPEAIAD  195 (258)
T ss_dssp             HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHhCCHHHHHHH
Confidence                             1 112345555666666666777777777666665432 4566666666667777766665  


Q ss_pred             ---------cchhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 036068          128 ---------KDKFSWTTMIVGLAISGNGDKALDMFSQMLR  158 (178)
Q Consensus       128 ---------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~  158 (178)
                               .+...|..+...+.+.|++++|.+.|++..+
T Consensus       196 ~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~  235 (258)
T 3uq3_A          196 CNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAART  235 (258)
T ss_dssp             HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence                     2355666666677777777777777766654

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.31  E-value=1.7e-10  Score=80.14  Aligned_cols=170  Identities=13%  Similarity=0.023  Sum_probs=138.1

Q ss_pred             chhHHHHHHHHHHhcCChhHHHHHhccCCC--CChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCC--CCc----HHHHH
Q 036068            5 DVISWTAIVSRYINRGQVDIARQCFDQMPE--RDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNI--MGD----EFTIV   76 (178)
Q Consensus         5 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~--~~~----~~~~~   76 (178)
                      ....|..+...+.+.|++++|.+.|++..+  .+...|..+...+...|++++|.+.|++..+..-  .++    ..++.
T Consensus         4 ~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~   83 (258)
T 3uq3_A            4 MADKEKAEGNKFYKARQFDEAIEHYNKAWELHKDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFA   83 (258)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHH
Confidence            456788899999999999999999987642  6788999999999999999999999999876431  112    57888


Q ss_pred             HHHHHhccccchhhHHHHHHHHHHhC-------------------------cccchHHHHHHHHHHHhcCChhhhc----
Q 036068           77 SILTARANLRALDLGEWIKTYIDKNK-------------------------VKNDIFAGNALIDMYCICADVEKAQ----  127 (178)
Q Consensus        77 ~ll~~~~~~~~~~~a~~~~~~m~~~~-------------------------~~~~~~~~~~ll~~~~~~~~~~~a~----  127 (178)
                      .+..++.+.|++++|...++...+..                         .+.+...+..+...+...|++++|.    
T Consensus        84 ~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~  163 (258)
T 3uq3_A           84 RIGNAYHKLGDLKKTIEYYQKSLTEHRTADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYT  163 (258)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHcccHHHHHHHHHHHHhcCchhHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence            99999999999999999999888742                         1234667888888999999999997    


Q ss_pred             -------cchhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhHHHHHHhhh
Q 036068          128 -------KDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC  175 (178)
Q Consensus       128 -------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~a~  175 (178)
                             .+...|..+...+.+.|++++|.+.+++..+.. +.+...+..+-..+
T Consensus       164 ~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~  217 (258)
T 3uq3_A          164 EMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQ  217 (258)
T ss_dssp             HHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred             HHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-HHHHHHHHHHHHHH
Confidence                   367788999999999999999999999998753 22345555554443

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.29  E-value=1.4e-10  Score=92.78  Aligned_cols=153  Identities=9%  Similarity=-0.011  Sum_probs=135.3

Q ss_pred             cchhHHHHHHHHHHhcCChhHHHHHhccCCC--C-ChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHH
Q 036068            4 KDVISWTAIVSRYINRGQVDIARQCFDQMPE--R-DYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILT   80 (178)
Q Consensus         4 p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~   80 (178)
                      -++..|+.+-..+.+.|++++|.+.|++..+  | +...|..|-..|.+.|++++|.+.|++..+.. +-+...|..+-.
T Consensus         7 ~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~nLg~   85 (723)
T 4gyw_A            7 THADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMGN   85 (723)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence            3467899999999999999999999998753  3 77899999999999999999999999988864 235788999999


Q ss_pred             HhccccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHhcCChhhhc-----------cchhhHHHHHHHHHhcCChhHH
Q 036068           81 ARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ-----------KDKFSWTTMIVGLAISGNGDKA  149 (178)
Q Consensus        81 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~-----------~~~~~~~~li~~~~~~~~~~~a  149 (178)
                      ++.+.|++++|.+.|++..+.... +...|+.+-..|.+.|++++|.           .+...|..+...+...|++++|
T Consensus        86 ~l~~~g~~~~A~~~~~kAl~l~P~-~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~A  164 (723)
T 4gyw_A           86 TLKEMQDVQGALQCYTRAIQINPA-FADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDY  164 (723)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTTH
T ss_pred             HHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHHH
Confidence            999999999999999999987643 5788999999999999999998           3678899999999999999999


Q ss_pred             HHHHHHHHH
Q 036068          150 LDMFSQMLR  158 (178)
Q Consensus       150 ~~~~~~m~~  158 (178)
                      .+.+++.++
T Consensus       165 ~~~~~kal~  173 (723)
T 4gyw_A          165 DERMKKLVS  173 (723)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999888764

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.29  E-value=5.3e-10  Score=80.21  Aligned_cols=153  Identities=12%  Similarity=-0.025  Sum_probs=79.6

Q ss_pred             chhHHHHHHHHHHhcCChhHHHHHhccCCC---CChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCC-------------
Q 036068            5 DVISWTAIVSRYINRGQVDIARQCFDQMPE---RDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNI-------------   68 (178)
Q Consensus         5 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~-------------   68 (178)
                      +...|..+...+.+.|++++|.+.|++..+   .+...+..+...+...|++++|.+.+++..+...             
T Consensus        54 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~  133 (327)
T 3cv0_A           54 REEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQAD  133 (327)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTTTC--------
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHH
Confidence            344555556666666666666666665432   2455555566666666666666666655543210             


Q ss_pred             -----------------------------------CCcHHHHHHHHHHhccccchhhHHHHHHHHHHhCcccchHHHHHH
Q 036068           69 -----------------------------------MGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNAL  113 (178)
Q Consensus        69 -----------------------------------~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l  113 (178)
                                                         +.+...+..+...+.+.|++++|...++...+... .+..++..+
T Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l  212 (327)
T 3cv0_A          134 VDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRP-DDAQLWNKL  212 (327)
T ss_dssp             ------------CCTTSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHH
T ss_pred             HHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CcHHHHHHH
Confidence                                               11233444444445555555555555555544432 234445555


Q ss_pred             HHHHHhcCChhhhc-----------cchhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 036068          114 IDMYCICADVEKAQ-----------KDKFSWTTMIVGLAISGNGDKALDMFSQMLR  158 (178)
Q Consensus       114 l~~~~~~~~~~~a~-----------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~  158 (178)
                      ...|.+.|++++|.           .+...|..+...+.+.|++++|.+.+++..+
T Consensus       213 ~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~  268 (327)
T 3cv0_A          213 GATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIY  268 (327)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence            55555555555554           2344555555555566666666666655554

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.27  E-value=6.6e-10  Score=79.72  Aligned_cols=169  Identities=11%  Similarity=0.037  Sum_probs=127.8

Q ss_pred             chhHHHHHHHHHHhcCChhHHHHHhccCCC---CChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHH
Q 036068            5 DVISWTAIVSRYINRGQVDIARQCFDQMPE---RDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTA   81 (178)
Q Consensus         5 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~   81 (178)
                      +...|..+...+.+.|++++|..+|+++.+   .+...+..+...+...|++++|.+.|++..+.. +.+..++..+...
T Consensus        20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~   98 (327)
T 3cv0_A           20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVS   98 (327)
T ss_dssp             GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHH
Confidence            556677889999999999999999998753   377788899999999999999999999998864 3466788888888


Q ss_pred             hccccchhhHHHHHHHHHHhCc------------------------------------------------ccchHHHHHH
Q 036068           82 RANLRALDLGEWIKTYIDKNKV------------------------------------------------KNDIFAGNAL  113 (178)
Q Consensus        82 ~~~~~~~~~a~~~~~~m~~~~~------------------------------------------------~~~~~~~~~l  113 (178)
                      +.+.|++++|.+.++...+...                                                +.+..++..+
T Consensus        99 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l  178 (327)
T 3cv0_A           99 HTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASL  178 (327)
T ss_dssp             HHHTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHH
Confidence            8888888888777766554321                                                1245667777


Q ss_pred             HHHHHhcCChhhhc-----------cchhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhHHHHHHhhh
Q 036068          114 IDMYCICADVEKAQ-----------KDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC  175 (178)
Q Consensus       114 l~~~~~~~~~~~a~-----------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~a~  175 (178)
                      ...|.+.|++++|.           .+...|..+...+...|++++|.+.|++..+.. +.+...+..+...+
T Consensus       179 a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~  250 (327)
T 3cv0_A          179 GVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDIN-PGYVRVMYNMAVSY  250 (327)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred             HHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHH
Confidence            77788888888876           256677888888888888888888888887642 22344555444433

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=99.25  E-value=6.4e-10  Score=80.62  Aligned_cols=150  Identities=11%  Similarity=0.012  Sum_probs=78.2

Q ss_pred             hhHHHHHHHHHHhcCChhHHHHHhccCCC--C-ChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCC----cHHHHHHH
Q 036068            6 VISWTAIVSRYINRGQVDIARQCFDQMPE--R-DYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMG----DEFTIVSI   78 (178)
Q Consensus         6 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~----~~~~~~~l   78 (178)
                      +..|..+...+.+.|++++|...|++..+  | +...|..+...+...|++++|...|++..+..  |    +...+..+
T Consensus        37 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~l  114 (359)
T 3ieg_A           37 YIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSN--PSEQEEKEAESQL  114 (359)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHcCChHHHHHHHHHHHhcC--CcccChHHHHHHH
Confidence            34455555555555555555555554432  2 44455555555555555555555555554432  2    22222222


Q ss_pred             ------------HHHhccccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHhcCChhhhc-----------cchhhHHH
Q 036068           79 ------------LTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ-----------KDKFSWTT  135 (178)
Q Consensus        79 ------------l~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~-----------~~~~~~~~  135 (178)
                                  ...+...|++++|.++++.+.+..+ .+..++..+...+...|++++|.           .+...|..
T Consensus       115 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~  193 (359)
T 3ieg_A          115 VKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCV-WDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYK  193 (359)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence                        2445555555555555555555432 23455555555555666655554           24455555


Q ss_pred             HHHHHHhcCChhHHHHHHHHHHH
Q 036068          136 MIVGLAISGNGDKALDMFSQMLR  158 (178)
Q Consensus       136 li~~~~~~~~~~~a~~~~~~m~~  158 (178)
                      +...+...|++++|.+.|++..+
T Consensus       194 la~~~~~~~~~~~A~~~~~~a~~  216 (359)
T 3ieg_A          194 ISTLYYQLGDHELSLSEVRECLK  216 (359)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHh
Confidence            55666666666666666666554

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.24  E-value=4.2e-10  Score=79.00  Aligned_cols=152  Identities=11%  Similarity=-0.081  Sum_probs=114.1

Q ss_pred             chhHHHHHHHHHHhcCChhHHHHHhccCCC---CChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHH
Q 036068            5 DVISWTAIVSRYINRGQVDIARQCFDQMPE---RDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTA   81 (178)
Q Consensus         5 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~   81 (178)
                      +..+|..+...+...|++++|...|++..+   .+...|..+...|...|++++|.+.|++..+.. +.+...+..+..+
T Consensus        42 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~  120 (275)
T 1xnf_A           42 RAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELD-PTYNYAHLNRGIA  120 (275)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-ccccHHHHHHHHH
Confidence            466788888889999999999998887653   367788888888889999999999998887764 2356788888888


Q ss_pred             hccccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHhcCChhhhc----------------------------------
Q 036068           82 RANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ----------------------------------  127 (178)
Q Consensus        82 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~----------------------------------  127 (178)
                      +.+.|++++|...++...+....  .......+..+...|++++|.                                  
T Consensus       121 ~~~~g~~~~A~~~~~~a~~~~~~--~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~  198 (275)
T 1xnf_A          121 LYYGGRDKLAQDDLLAFYQDDPN--DPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYLGNISEQTLME  198 (275)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSCCCSTHHHHHHHHTTSSCHHHHHH
T ss_pred             HHHhccHHHHHHHHHHHHHhCCC--ChHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhcCHHHHHH
Confidence            88889999988888888775432  222222222333334444443                                  


Q ss_pred             ---------c-----chhhHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 036068          128 ---------K-----DKFSWTTMIVGLAISGNGDKALDMFSQMLRA  159 (178)
Q Consensus       128 ---------~-----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~  159 (178)
                               +     +...|..+...+.+.|++++|...|++..+.
T Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  244 (275)
T 1xnf_A          199 RLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVAN  244 (275)
T ss_dssp             HHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred             HHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Confidence                     1     2577888999999999999999999999875

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=99.22  E-value=8.5e-10  Score=68.72  Aligned_cols=128  Identities=15%  Similarity=0.216  Sum_probs=101.9

Q ss_pred             hHHHHHHHHHHhcCChhHHHHHhccCCC---CChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHHhc
Q 036068            7 ISWTAIVSRYINRGQVDIARQCFDQMPE---RDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARA   83 (178)
Q Consensus         7 ~~~~~li~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~   83 (178)
                      ..|..+...+.+.|++++|..+++++.+   .+...+..+...+...|++++|...|+++.+.+ +.+...+..+...+.
T Consensus         2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~   80 (136)
T 2fo7_A            2 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYY   80 (136)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHH
Confidence            3577788888999999999999987653   367778888888889999999999999987765 345677888888899


Q ss_pred             cccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHhcCChhhhccchhhHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 036068           84 NLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQKDKFSWTTMIVGLAISGNGDKALDMFSQMLRA  159 (178)
Q Consensus        84 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~  159 (178)
                      +.|++++|.++++.+.+....                        +...+..+...+.+.|++++|.+.++++.+.
T Consensus        81 ~~~~~~~A~~~~~~~~~~~~~------------------------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~  132 (136)
T 2fo7_A           81 KQGDYDEAIEYYQKALELDPR------------------------SAEAWYNLGNAYYKQGDYDEAIEYYQKALEL  132 (136)
T ss_dssp             TTTCHHHHHHHHHHHHHHCTT------------------------CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred             HhcCHHHHHHHHHHHHHhCCC------------------------ChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence            999999999999888776432                        2234566777888889999999999998764

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=99.22  E-value=9.8e-10  Score=79.65  Aligned_cols=169  Identities=15%  Similarity=0.048  Sum_probs=138.4

Q ss_pred             chhHHHHHHHHHHhcCChhHHHHHhccCCC---CChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHH
Q 036068            5 DVISWTAIVSRYINRGQVDIARQCFDQMPE---RDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTA   81 (178)
Q Consensus         5 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~   81 (178)
                      |+..|..+...+.+.|++++|.+.|++..+   .+...+..+...+...|++++|...|++..+.. +-+...+..+..+
T Consensus         2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~   80 (359)
T 3ieg_A            2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGHL   80 (359)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHHH
Confidence            567788899999999999999999998753   367889999999999999999999999998764 3366889999999


Q ss_pred             hccccchhhHHHHHHHHHHhCcc--cchHHHHHH------------HHHHHhcCChhhhc-----------cchhhHHHH
Q 036068           82 RANLRALDLGEWIKTYIDKNKVK--NDIFAGNAL------------IDMYCICADVEKAQ-----------KDKFSWTTM  136 (178)
Q Consensus        82 ~~~~~~~~~a~~~~~~m~~~~~~--~~~~~~~~l------------l~~~~~~~~~~~a~-----------~~~~~~~~l  136 (178)
                      +.+.|++++|...++...+....  .+...+..+            ...+...|++++|.           .+...+..+
T Consensus        81 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~  160 (359)
T 3ieg_A           81 LLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELR  160 (359)
T ss_dssp             HHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             HHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHH
Confidence            99999999999999999887541  244555554            57899999999997           367788899


Q ss_pred             HHHHHhcCChhHHHHHHHHHHHcCCCCChhHHHHHHhhh
Q 036068          137 IVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC  175 (178)
Q Consensus       137 i~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~a~  175 (178)
                      ...+...|++++|.+.+++..+.. +.+...+..+-..+
T Consensus       161 ~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~  198 (359)
T 3ieg_A          161 AECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLY  198 (359)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence            999999999999999999998752 23455555554443

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=99.20  E-value=1.1e-09  Score=83.41  Aligned_cols=151  Identities=11%  Similarity=0.038  Sum_probs=81.7

Q ss_pred             hhHHHHHHHHHHhcCChhHHHHHhccCCC---CChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHHh
Q 036068            6 VISWTAIVSRYINRGQVDIARQCFDQMPE---RDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTAR   82 (178)
Q Consensus         6 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~   82 (178)
                      ...|..+...+...|++++|...+++..+   .+...|..+...+...|++++|...|++..+.. +.+...+..+...+
T Consensus       270 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~  348 (514)
T 2gw1_A          270 VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELD-PENIFPYIQLACLA  348 (514)
T ss_dssp             HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTC-SSCSHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-hhhHHHHHHHHHHH
Confidence            34445555555555555555555554332   244455555556666666666666666655543 22344555555566


Q ss_pred             ccccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHhcCChhhhc----------cc-------hhhHHHHHHHHHh---
Q 036068           83 ANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ----------KD-------KFSWTTMIVGLAI---  142 (178)
Q Consensus        83 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~----------~~-------~~~~~~li~~~~~---  142 (178)
                      .+.|++++|...++.+.+... .+..++..+...|.+.|++++|.          |+       ...|..+...+..   
T Consensus       349 ~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  427 (514)
T 2gw1_A          349 YRENKFDDCETLFSEAKRKFP-EAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPT  427 (514)
T ss_dssp             TTTTCHHHHHHHHHHHHHHST-TCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCC
T ss_pred             HHcCCHHHHHHHHHHHHHHcc-cCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhh
Confidence            666666666666665555432 23455555555666666665554          11       1155555566666   


Q ss_pred             cCChhHHHHHHHHHHH
Q 036068          143 SGNGDKALDMFSQMLR  158 (178)
Q Consensus       143 ~~~~~~a~~~~~~m~~  158 (178)
                      .|++++|.+.+++..+
T Consensus       428 ~~~~~~A~~~~~~a~~  443 (514)
T 2gw1_A          428 VENFIEATNLLEKASK  443 (514)
T ss_dssp             TTHHHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHH
Confidence            6666666666666554

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.20  E-value=5.7e-10  Score=85.22  Aligned_cols=154  Identities=12%  Similarity=-0.009  Sum_probs=136.1

Q ss_pred             CcchhHHHHHHHHHHhcCCh-hHHHHHhccCCC---CChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHH
Q 036068            3 NKDVISWTAIVSRYINRGQV-DIARQCFDQMPE---RDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSI   78 (178)
Q Consensus         3 ~p~~~~~~~li~~~~~~~~~-~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l   78 (178)
                      +.+...|..+-..+...|++ ++|.+.|++..+   .+...|..+-..|.+.|++++|.+.|++..+..  |+...+..+
T Consensus        99 ~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~l  176 (474)
T 4abn_A           99 QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHC--KNKVSLQNL  176 (474)
T ss_dssp             CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTC--CCHHHHHHH
T ss_pred             chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCHHHHHHH
Confidence            34677888999999999999 999999998753   368899999999999999999999999998874  778889999


Q ss_pred             HHHhccc---------cchhhHHHHHHHHHHhCcccchHHHHHHHHHHHhc--------CChhhhc----------c---
Q 036068           79 LTARANL---------RALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC--------ADVEKAQ----------K---  128 (178)
Q Consensus        79 l~~~~~~---------~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~--------~~~~~a~----------~---  128 (178)
                      -.++.+.         |++++|.+.++...+..+. +...|..+-..|...        |++++|.          |   
T Consensus       177 g~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~  255 (474)
T 4abn_A          177 SMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVL-DGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKAS  255 (474)
T ss_dssp             HHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGG
T ss_pred             HHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCcc
Confidence            9999999         9999999999999987643 578899999999888        8898887          5   


Q ss_pred             -chhhHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 036068          129 -DKFSWTTMIVGLAISGNGDKALDMFSQMLRA  159 (178)
Q Consensus       129 -~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~  159 (178)
                       +...|..+...|...|++++|.+.|++..+.
T Consensus       256 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l  287 (474)
T 4abn_A          256 SNPDLHLNRATLHKYEESYGEALEGFSQAAAL  287 (474)
T ss_dssp             GCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence             5778899999999999999999999999875

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=99.19  E-value=1e-09  Score=83.54  Aligned_cols=162  Identities=11%  Similarity=-0.010  Sum_probs=137.1

Q ss_pred             CcchhHHHHHHHHHHhcCChhHHHHHhccCC---CCChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHH
Q 036068            3 NKDVISWTAIVSRYINRGQVDIARQCFDQMP---ERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSIL   79 (178)
Q Consensus         3 ~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll   79 (178)
                      +.+..+|..+...+.+.|++++|...|++..   ..+...+..+...+...|++++|.+.|++..+.. +.+...+..+.
T Consensus       301 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la  379 (514)
T 2gw1_A          301 SNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFA  379 (514)
T ss_dssp             TTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHH
Confidence            3467789999999999999999999999864   2477889999999999999999999999988764 33567888999


Q ss_pred             HHhccccchhhHHHHHHHHHHhCccc-c----hHHHHHHHHHHHh---cCChhhhc-----------cchhhHHHHHHHH
Q 036068           80 TARANLRALDLGEWIKTYIDKNKVKN-D----IFAGNALIDMYCI---CADVEKAQ-----------KDKFSWTTMIVGL  140 (178)
Q Consensus        80 ~~~~~~~~~~~a~~~~~~m~~~~~~~-~----~~~~~~ll~~~~~---~~~~~~a~-----------~~~~~~~~li~~~  140 (178)
                      ..+.+.|++++|...++.+.+..... .    ..++..+...+.+   .|++++|.           .+..++..+...+
T Consensus       380 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~  459 (514)
T 2gw1_A          380 EILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMK  459 (514)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence            99999999999999999988754332 1    3489999999999   99999997           3677888999999


Q ss_pred             HhcCChhHHHHHHHHHHHcCCCCChhH
Q 036068          141 AISGNGDKALDMFSQMLRASIKPDEVA  167 (178)
Q Consensus       141 ~~~~~~~~a~~~~~~m~~~g~~p~~~t  167 (178)
                      .+.|++++|.+.|++..+.  .|+...
T Consensus       460 ~~~g~~~~A~~~~~~a~~~--~~~~~~  484 (514)
T 2gw1_A          460 LQQEDIDEAITLFEESADL--ARTMEE  484 (514)
T ss_dssp             HHTTCHHHHHHHHHHHHHH--CSSHHH
T ss_pred             HHhcCHHHHHHHHHHHHHh--ccccHH
Confidence            9999999999999999875  465443

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=99.19  E-value=2.6e-09  Score=73.39  Aligned_cols=165  Identities=13%  Similarity=0.022  Sum_probs=133.3

Q ss_pred             cchhHHHHHHHHHHhcCChhHHHHHhccCCC----CChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHH
Q 036068            4 KDVISWTAIVSRYINRGQVDIARQCFDQMPE----RDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSIL   79 (178)
Q Consensus         4 p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll   79 (178)
                      .|+..|...-..+.+.|++++|.+.|++..+    ++...+..+-..+...|++++|.+.|++..+.. +-+...+..+.
T Consensus         5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~   83 (228)
T 4i17_A            5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYIGKS   83 (228)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHHHHH
Confidence            5667888899999999999999999997642    577777778889999999999999999988765 23567888899


Q ss_pred             HHhccccchhhHHHHHHHHHHhCcccch-------HHHHHHHHHHHhcCChhhhc----------c---chhhHHHHHHH
Q 036068           80 TARANLRALDLGEWIKTYIDKNKVKNDI-------FAGNALIDMYCICADVEKAQ----------K---DKFSWTTMIVG  139 (178)
Q Consensus        80 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~-------~~~~~ll~~~~~~~~~~~a~----------~---~~~~~~~li~~  139 (178)
                      .++.+.|++++|...++...+..+. +.       ..|..+-..+.+.|++++|.          |   +...|..+...
T Consensus        84 ~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~  162 (228)
T 4i17_A           84 AAYRDMKNNQEYIATLTEGIKAVPG-NATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGVL  162 (228)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHH
T ss_pred             HHHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHHH
Confidence            9999999999999999999887643 34       45777777888899999987          3   35677778888


Q ss_pred             HHhcCCh---------------------------hHHHHHHHHHHHcCCCCChhHHHHHH
Q 036068          140 LAISGNG---------------------------DKALDMFSQMLRASIKPDEVAYVGVL  172 (178)
Q Consensus       140 ~~~~~~~---------------------------~~a~~~~~~m~~~g~~p~~~t~~~li  172 (178)
                      +...|+.                           ++|+..|++..+.  .|+......++
T Consensus       163 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~l--~p~~~~~~~~l  220 (228)
T 4i17_A          163 FYNNGADVLRKATPLASSNKEKYASEKAKADAAFKKAVDYLGEAVTL--SPNRTEIKQMQ  220 (228)
T ss_dssp             HHHHHHHHHHHHGGGTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhc--CCCCHHHHHHH
Confidence            8888877                           8899999998875  56655444433

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=99.15  E-value=1.1e-09  Score=77.92  Aligned_cols=155  Identities=12%  Similarity=0.067  Sum_probs=127.3

Q ss_pred             cchhHHHHHHHHHHhcCChhHHHHHhccCCC--------C---ChhHHHHHHHHHhhcCChhHHHHHHHHhHhC------
Q 036068            4 KDVISWTAIVSRYINRGQVDIARQCFDQMPE--------R---DYVLWTAMIDGYLRVNRFREALTLFQEMQTS------   66 (178)
Q Consensus         4 p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~--------~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~------   66 (178)
                      .+..+|..+...+...|++++|...|++..+        .   ....+..+...|...|++++|...+++..+.      
T Consensus        25 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  104 (311)
T 3nf1_A           25 ARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLG  104 (311)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhC
Confidence            3466789999999999999999999998754        1   4557888889999999999999999998654      


Q ss_pred             CC-CCcHHHHHHHHHHhccccchhhHHHHHHHHHHh------Cc-ccchHHHHHHHHHHHhcCChhhhc-----------
Q 036068           67 NI-MGDEFTIVSILTARANLRALDLGEWIKTYIDKN------KV-KNDIFAGNALIDMYCICADVEKAQ-----------  127 (178)
Q Consensus        67 ~~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~------~~-~~~~~~~~~ll~~~~~~~~~~~a~-----------  127 (178)
                      +- .....++..+...+...|++++|...++...+.      +. +....++..+...|...|++++|.           
T Consensus       105 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~  184 (311)
T 3nf1_A          105 KDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQ  184 (311)
T ss_dssp             TTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHH
T ss_pred             CCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence            22 334567888999999999999999999888764      22 234667888899999999999987           


Q ss_pred             --------cchhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 036068          128 --------KDKFSWTTMIVGLAISGNGDKALDMFSQMLR  158 (178)
Q Consensus       128 --------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~  158 (178)
                              ....++..+...+...|++++|.+++++..+
T Consensus       185 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  223 (311)
T 3nf1_A          185 TKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILT  223 (311)
T ss_dssp             HTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence                    1244678888999999999999999999986

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=99.15  E-value=2.2e-09  Score=82.24  Aligned_cols=151  Identities=9%  Similarity=-0.089  Sum_probs=132.7

Q ss_pred             hHHHHHHHHHHhcCChhHHHHHhccCC--CCChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHHhcc
Q 036068            7 ISWTAIVSRYINRGQVDIARQCFDQMP--ERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARAN   84 (178)
Q Consensus         7 ~~~~~li~~~~~~~~~~~a~~~~~~m~--~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~   84 (178)
                      .+|..+...+...|++++|.+.|++..  .|+...|..+...+...|++++|.+.|++..+.. +.+..++..+...+.+
T Consensus       244 ~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~  322 (537)
T 3fp2_A          244 LALCYTGIFHFLKNNLLDAQVLLQESINLHPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFI  322 (537)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcccHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHh
Confidence            357777888999999999999999876  3667888899999999999999999999998765 3467889999999999


Q ss_pred             ccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHhcCChhhhc-----------cchhhHHHHHHHHHhcCChhHHHHHH
Q 036068           85 LRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ-----------KDKFSWTTMIVGLAISGNGDKALDMF  153 (178)
Q Consensus        85 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~-----------~~~~~~~~li~~~~~~~~~~~a~~~~  153 (178)
                      .|++++|...++...+.... +...+..+...|.+.|++++|.           .+...|..+...+...|++++|.+.|
T Consensus       323 ~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~  401 (537)
T 3fp2_A          323 LQDYKNAKEDFQKAQSLNPE-NVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQY  401 (537)
T ss_dssp             TTCHHHHHHHHHHHHHHCTT-CSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHH
Confidence            99999999999999987643 5788999999999999999997           35778899999999999999999999


Q ss_pred             HHHHHc
Q 036068          154 SQMLRA  159 (178)
Q Consensus       154 ~~m~~~  159 (178)
                      ++..+.
T Consensus       402 ~~a~~~  407 (537)
T 3fp2_A          402 DIAKRL  407 (537)
T ss_dssp             HHHHHH
T ss_pred             HHHHHc
Confidence            998764

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.14  E-value=8.5e-09  Score=72.27  Aligned_cols=153  Identities=7%  Similarity=-0.081  Sum_probs=124.4

Q ss_pred             hhHHHHHHHHHHhcCChhHHHHHhccCCC--C-ChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCc--HHHHHHHHH
Q 036068            6 VISWTAIVSRYINRGQVDIARQCFDQMPE--R-DYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGD--EFTIVSILT   80 (178)
Q Consensus         6 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~--~~~~~~ll~   80 (178)
                      ...+......+.+.|++++|...|++..+  | +...+..+...|...|++++|.+.+++..+..-.|+  ...|..+..
T Consensus         3 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~   82 (272)
T 3u4t_A            3 DDVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGK   82 (272)
T ss_dssp             --CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHH
Confidence            34456678889999999999999998753  3 566888999999999999999999999988432222  345888999


Q ss_pred             HhccccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHhcCChhhhc-----------cchhhHHHHHHHHHhcCChhHH
Q 036068           81 ARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ-----------KDKFSWTTMIVGLAISGNGDKA  149 (178)
Q Consensus        81 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~-----------~~~~~~~~li~~~~~~~~~~~a  149 (178)
                      ++.+.|++++|...++...+.... +..++..+-..|...|++++|.           .+...|..+...+...+++++|
T Consensus        83 ~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A  161 (272)
T 3u4t_A           83 ILMKKGQDSLAIQQYQAAVDRDTT-RLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKA  161 (272)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHcccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999987643 5788999999999999999997           3566666666344455699999


Q ss_pred             HHHHHHHHHc
Q 036068          150 LDMFSQMLRA  159 (178)
Q Consensus       150 ~~~~~~m~~~  159 (178)
                      .+.|++..+.
T Consensus       162 ~~~~~~a~~~  171 (272)
T 3u4t_A          162 DSSFVKVLEL  171 (272)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHh
Confidence            9999999875

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.13  E-value=1.6e-08  Score=71.19  Aligned_cols=149  Identities=11%  Similarity=-0.001  Sum_probs=81.1

Q ss_pred             chhHHHHHHHHHHhcCChhHHHHHhccCCCC-ChhHHHHHHHHHhh----cCChhHHHHHHHHhHhCCCCCcHHHHHHHH
Q 036068            5 DVISWTAIVSRYINRGQVDIARQCFDQMPER-DYVLWTAMIDGYLR----VNRFREALTLFQEMQTSNIMGDEFTIVSIL   79 (178)
Q Consensus         5 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll   79 (178)
                      ++.++..+-..+.+.|++++|.+.|++..++ +...+..+-..|..    .+++++|.+.|++..+.+   +...+..+-
T Consensus         5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg   81 (273)
T 1ouv_A            5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHLLG   81 (273)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHH
T ss_pred             ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHHHHH
Confidence            4445555566666666666666666654433 34455555555555    666666666666655554   444555555


Q ss_pred             HHhcc----ccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHh----cCChhhhc---------cchhhHHHHHHHHHh
Q 036068           80 TARAN----LRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCI----CADVEKAQ---------KDKFSWTTMIVGLAI  142 (178)
Q Consensus        80 ~~~~~----~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~---------~~~~~~~~li~~~~~  142 (178)
                      ..+.+    .+++++|...++...+.+   ++..+..+-..|..    .+++++|.         .+...+..+-..|..
T Consensus        82 ~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~  158 (273)
T 1ouv_A           82 NLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLNDGDGCTILGSLYDA  158 (273)
T ss_dssp             HHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcCcHHHHHHHHHHHHc
Confidence            55555    566666666665555543   34455555555555    55555554         233444444444444


Q ss_pred             ----cCChhHHHHHHHHHHHc
Q 036068          143 ----SGNGDKALDMFSQMLRA  159 (178)
Q Consensus       143 ----~~~~~~a~~~~~~m~~~  159 (178)
                          .+++++|.+.|++..+.
T Consensus       159 ~~~~~~~~~~A~~~~~~a~~~  179 (273)
T 1ouv_A          159 GRGTPKDLKKALASYDKACDL  179 (273)
T ss_dssp             TSSSCCCHHHHHHHHHHHHHT
T ss_pred             CCCCCCCHHHHHHHHHHHHHC
Confidence                55555555555555543

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=99.11  E-value=9.9e-10  Score=77.04  Aligned_cols=154  Identities=10%  Similarity=-0.014  Sum_probs=122.6

Q ss_pred             chhHHHHHHHHHHhcCChhHHHHHhccCCC----------C-ChhHHHHHHHHHhhcCChhHHHHHHHHhHhC------C
Q 036068            5 DVISWTAIVSRYINRGQVDIARQCFDQMPE----------R-DYVLWTAMIDGYLRVNRFREALTLFQEMQTS------N   67 (178)
Q Consensus         5 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~----------~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~------~   67 (178)
                      ...+|..+...+...|++++|...+++..+          | ...++..+...|...|++++|.+.|++..+.      .
T Consensus        42 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~  121 (283)
T 3edt_B           42 VATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGK  121 (283)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCC
Confidence            456788899999999999999999987642          1 4557888899999999999999999987654      1


Q ss_pred             -CCCcHHHHHHHHHHhccccchhhHHHHHHHHHHh------C-cccchHHHHHHHHHHHhcCChhhhc----------c-
Q 036068           68 -IMGDEFTIVSILTARANLRALDLGEWIKTYIDKN------K-VKNDIFAGNALIDMYCICADVEKAQ----------K-  128 (178)
Q Consensus        68 -~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~------~-~~~~~~~~~~ll~~~~~~~~~~~a~----------~-  128 (178)
                       -+....++..+...+...|++++|...++...+.      + .+....++..+...|.+.|++++|.          + 
T Consensus       122 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~  201 (283)
T 3edt_B          122 FHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHE  201 (283)
T ss_dssp             TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred             CChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence             1234567888888999999999999999888765      1 2224667888889999999999887          0 


Q ss_pred             -------------------------------------------------chhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 036068          129 -------------------------------------------------DKFSWTTMIVGLAISGNGDKALDMFSQMLR  158 (178)
Q Consensus       129 -------------------------------------------------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~  158 (178)
                                                                       ...++..+...|...|++++|.++|++.++
T Consensus       202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  280 (283)
T 3edt_B          202 KEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASR  280 (283)
T ss_dssp             HHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred             hcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence                                                             123567788899999999999999998775

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.09  E-value=8.9e-09  Score=76.63  Aligned_cols=148  Identities=9%  Similarity=0.048  Sum_probs=67.2

Q ss_pred             hHHHHHHHHHHhcCC-hhHHHHHhccCCC---CChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHHh
Q 036068            7 ISWTAIVSRYINRGQ-VDIARQCFDQMPE---RDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTAR   82 (178)
Q Consensus         7 ~~~~~li~~~~~~~~-~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~   82 (178)
                      ..|+.+-..+.+.|+ +++|+..|++..+   .+...|+.+-..+.+.|++++|+..|++..+.. +-+...|..+-.++
T Consensus       132 ~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~  210 (382)
T 2h6f_A          132 TVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVI  210 (382)
T ss_dssp             HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHH
Confidence            334444444444443 4444444444331   234444444444444444444544444444433 12344444444444


Q ss_pred             ccccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHh-cCChhhhc----------------cchhhHHHHHHHHHhcC-
Q 036068           83 ANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCI-CADVEKAQ----------------KDKFSWTTMIVGLAISG-  144 (178)
Q Consensus        83 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~-~~~~~~a~----------------~~~~~~~~li~~~~~~~-  144 (178)
                      .+.|++++|...++.+++..+. +...|+.+-..+.+ .|..++|.                .+...|+.+...+...| 
T Consensus       211 ~~~g~~~eAl~~~~~al~l~P~-~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~  289 (382)
T 2h6f_A          211 QEFKLWDNELQYVDQLLKEDVR-NNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGL  289 (382)
T ss_dssp             HHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCG
T ss_pred             HHcCChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCc
Confidence            4555555555555555544322 34445555444444 33323331                13444555554455444 


Q ss_pred             -ChhHHHHHHHHH
Q 036068          145 -NGDKALDMFSQM  156 (178)
Q Consensus       145 -~~~~a~~~~~~m  156 (178)
                       ++++|++.+.++
T Consensus       290 ~~~~~a~~~~~~~  302 (382)
T 2h6f_A          290 SKYPNLLNQLLDL  302 (382)
T ss_dssp             GGCHHHHHHHHHH
T ss_pred             cchHHHHHHHHHh
Confidence             355555555554

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.09  E-value=3.9e-09  Score=73.98  Aligned_cols=141  Identities=9%  Similarity=-0.152  Sum_probs=118.3

Q ss_pred             HhcCChhHHHHHhccCCCC-------ChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHHhccccchh
Q 036068           17 INRGQVDIARQCFDQMPER-------DYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANLRALD   89 (178)
Q Consensus        17 ~~~~~~~~a~~~~~~m~~~-------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~   89 (178)
                      ...|++++|.+.|+++.+.       +...|..+...+...|++++|...|++..+.. +.+..++..+..++.+.|+++
T Consensus        16 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~   94 (275)
T 1xnf_A           16 QPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFD   94 (275)
T ss_dssp             CCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHH
T ss_pred             CccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHH
Confidence            3567899999999977642       56788899999999999999999999998875 336789999999999999999


Q ss_pred             hHHHHHHHHHHhCcccchHHHHHHHHHHHhcCChhhhc----------cchhhHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 036068           90 LGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ----------KDKFSWTTMIVGLAISGNGDKALDMFSQMLRA  159 (178)
Q Consensus        90 ~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~----------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~  159 (178)
                      +|...++...+... .+..++..+...|.+.|++++|.          |+..........+...|++++|...+++....
T Consensus        95 ~A~~~~~~al~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~  173 (275)
T 1xnf_A           95 AAYEAFDSVLELDP-TYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK  173 (275)
T ss_dssp             HHHHHHHHHHHHCT-TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCc-cccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence            99999999998764 35788999999999999999997          55555555556667789999999999887764

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=99.08  E-value=1.2e-08  Score=73.51  Aligned_cols=156  Identities=10%  Similarity=0.040  Sum_probs=125.5

Q ss_pred             CCcchhHHHHHHHHHHhcCChhHHHHHhccCCC--C-Chh-HHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHH
Q 036068            2 KNKDVISWTAIVSRYINRGQVDIARQCFDQMPE--R-DYV-LWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVS   77 (178)
Q Consensus         2 ~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~--~-~~~-~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~   77 (178)
                      ++.+...|..+...+.+.|++++|.++|++..+  | +.. .|..+...+.+.|++++|.++|++..+.. +++...|..
T Consensus        95 ~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~  173 (308)
T 2ond_A           95 LKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVT  173 (308)
T ss_dssp             TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHH
T ss_pred             CcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHH
Confidence            344566899999999999999999999998754  3 344 89999999999999999999999988764 334555544


Q ss_pred             HHHHh-ccccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHhcCChhhhc-------------c--chhhHHHHHHHHH
Q 036068           78 ILTAR-ANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ-------------K--DKFSWTTMIVGLA  141 (178)
Q Consensus        78 ll~~~-~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~-------------~--~~~~~~~li~~~~  141 (178)
                      ..... ...|++++|..+|+...+..+ .++..|..++..+.+.|+.++|.             |  ....|..++....
T Consensus       174 ~a~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~  252 (308)
T 2ond_A          174 AALMEYYCSKDKSVAFKIFELGLKKYG-DIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFES  252 (308)
T ss_dssp             HHHHHHHTSCCHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Confidence            43332 236999999999999888653 36888999999999999999986             1  2347888888889


Q ss_pred             hcCChhHHHHHHHHHHHc
Q 036068          142 ISGNGDKALDMFSQMLRA  159 (178)
Q Consensus       142 ~~~~~~~a~~~~~~m~~~  159 (178)
                      +.|+.++|..+++++.+.
T Consensus       253 ~~g~~~~a~~~~~~a~~~  270 (308)
T 2ond_A          253 NIGDLASILKVEKRRFTA  270 (308)
T ss_dssp             HHSCHHHHHHHHHHHHHH
T ss_pred             HcCCHHHHHHHHHHHHHH
Confidence            999999999999999874

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=99.07  E-value=3.2e-08  Score=66.97  Aligned_cols=146  Identities=11%  Similarity=-0.080  Sum_probs=108.2

Q ss_pred             chhHHHHHHHHHHhcCChhHHHHHhccCCCCChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHHhcc
Q 036068            5 DVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARAN   84 (178)
Q Consensus         5 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~   84 (178)
                      +...+..+...+.+.|++++|.+.|++...++...|..+...|.+.|++++|.+.|++..+.. +.+...+..+..++.+
T Consensus         5 ~~~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~   83 (213)
T 1hh8_A            5 EAISLWNEGVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQ   83 (213)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHH
Confidence            445567788889999999999999999988899999999999999999999999999988765 3467788899999999


Q ss_pred             ccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHhcCChhhhccchhhHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 036068           85 LRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQKDKFSWTTMIVGLAISGNGDKALDMFSQMLRA  159 (178)
Q Consensus        85 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~  159 (178)
                      .|++++|.+.++...+.........       +...|. .........+..+...+.+.|++++|.+.|++..+.
T Consensus        84 ~~~~~~A~~~~~~al~~~~~~~~~~-------~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~  150 (213)
T 1hh8_A           84 TEKYDLAIKDLKEALIQLRGNQLID-------YKILGL-QFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM  150 (213)
T ss_dssp             TTCHHHHHHHHHHHHHTTTTCSEEE-------CGGGTB-CCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred             cccHHHHHHHHHHHHHhCCCccHHH-------HHHhcc-ccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHc
Confidence            9999999999999887543211000       000000 000012345566666677777777777777776653

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=99.07  E-value=5.2e-09  Score=80.16  Aligned_cols=120  Identities=9%  Similarity=0.008  Sum_probs=60.9

Q ss_pred             hhHHHHHHHHHHhcCChhHHHHHhccCCC---CChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHHh
Q 036068            6 VISWTAIVSRYINRGQVDIARQCFDQMPE---RDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTAR   82 (178)
Q Consensus         6 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~   82 (178)
                      ...|..+...+.+.|++++|.+.|++..+   .+..+|..+...+...|++++|...|++..+.. +.+...+..+..++
T Consensus       276 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~  354 (537)
T 3fp2_A          276 PNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLN-PENVYPYIQLACLL  354 (537)
T ss_dssp             HHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCSHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence            44455555555555555555555554432   244455555555555555555555555554432 11234455555555


Q ss_pred             ccccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHhcCChhhhc
Q 036068           83 ANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ  127 (178)
Q Consensus        83 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~  127 (178)
                      .+.|++++|..+++...+... .+..++..+...+.+.|++++|.
T Consensus       355 ~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~  398 (537)
T 3fp2_A          355 YKQGKFTESEAFFNETKLKFP-TLPEVPTFFAEILTDRGDFDTAI  398 (537)
T ss_dssp             HHTTCHHHHHHHHHHHHHHCT-TCTHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHhCCHHHHH
Confidence            555555555555555554432 23444555555555555555554

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.06  E-value=1.4e-08  Score=75.48  Aligned_cols=162  Identities=10%  Similarity=0.028  Sum_probs=136.5

Q ss_pred             chhHHHHHHHHHHhcCChhHHHHHhccCCC---CChhHHHHHHHHHhhcCC-hhHHHHHHHHhHhCCCCCcHHHHHHHHH
Q 036068            5 DVISWTAIVSRYINRGQVDIARQCFDQMPE---RDYVLWTAMIDGYLRVNR-FREALTLFQEMQTSNIMGDEFTIVSILT   80 (178)
Q Consensus         5 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~-~~~a~~~~~~m~~~~~~~~~~~~~~ll~   80 (178)
                      +...|+.+-..+.+.|++++|++.+++..+   .+...|+.+-..+.+.|+ +++|+..|++..+.. +-+...|..+-.
T Consensus        96 ~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g~  174 (382)
T 2h6f_A           96 FRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRV  174 (382)
T ss_dssp             HHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
Confidence            345688899999999999999999998763   377889999999999997 999999999998875 336788999999


Q ss_pred             HhccccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHhcCChhhhc-----------cchhhHHHHHHHHHh-cCChhH
Q 036068           81 ARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ-----------KDKFSWTTMIVGLAI-SGNGDK  148 (178)
Q Consensus        81 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~-----------~~~~~~~~li~~~~~-~~~~~~  148 (178)
                      ++.+.|++++|...++...+.... +...|..+-..+.+.|++++|.           .+...|+.+...+.+ .|..++
T Consensus       175 ~~~~~g~~~eAl~~~~kal~ldP~-~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~~~~a~~~lg~~l~~l~~~~~e  253 (382)
T 2h6f_A          175 LVEWLRDPSQELEFIADILNQDAK-NYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDR  253 (382)
T ss_dssp             HHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSCSH
T ss_pred             HHHHccCHHHHHHHHHHHHHhCcc-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcchH
Confidence            999999999999999999998754 6889999999999999999998           478899999999999 666688


Q ss_pred             H-----HHHHHHHHHcCCCCCh-hHHHH
Q 036068          149 A-----LDMFSQMLRASIKPDE-VAYVG  170 (178)
Q Consensus       149 a-----~~~~~~m~~~g~~p~~-~t~~~  170 (178)
                      |     ++.|++.++.  .|+. ..|..
T Consensus       254 A~~~~el~~~~~Al~l--~P~~~~a~~~  279 (382)
T 2h6f_A          254 AVLEREVQYTLEMIKL--VPHNESAWNY  279 (382)
T ss_dssp             HHHHHHHHHHHHHHHH--STTCHHHHHH
T ss_pred             HHHHHHHHHHHHHHHH--CCCCHHHHHH
Confidence            8     5888888764  4644 34433

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=99.05  E-value=7e-09  Score=70.58  Aligned_cols=163  Identities=15%  Similarity=0.079  Sum_probs=123.8

Q ss_pred             hhHHHHHHHHHHhcCChhHHHHHhccCCC--C-ChhHHHH----------------HHHHHhhcCChhHHHHHHHHhHhC
Q 036068            6 VISWTAIVSRYINRGQVDIARQCFDQMPE--R-DYVLWTA----------------MIDGYLRVNRFREALTLFQEMQTS   66 (178)
Q Consensus         6 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~--~-~~~~~~~----------------li~~~~~~~~~~~a~~~~~~m~~~   66 (178)
                      +..+-.....+.+.|++++|...|++..+  | +...|..                +-..|.+.|++++|...|++..+.
T Consensus         4 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~   83 (208)
T 3urz_A            4 VDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQK   83 (208)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence            34445556678899999999999998764  3 4455666                888999999999999999999887


Q ss_pred             CCCCcHHHHHHHHHHhccccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHhcCChhhhc----------cch--hhHH
Q 036068           67 NIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ----------KDK--FSWT  134 (178)
Q Consensus        67 ~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~----------~~~--~~~~  134 (178)
                      . +-+...+..+-.++...|++++|...|+...+..+. +..++..+-..|...|+.+...          ++.  ..+.
T Consensus        84 ~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~  161 (208)
T 3urz_A           84 A-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEAD-NLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKMQYARY  161 (208)
T ss_dssp             C-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCHHHHHHH
T ss_pred             C-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCchhHHHH
Confidence            5 336788999999999999999999999999988643 5777888877776655433221          222  2334


Q ss_pred             HHHHHHHhcCChhHHHHHHHHHHHcCCCCChhHHHHHH
Q 036068          135 TMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVL  172 (178)
Q Consensus       135 ~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li  172 (178)
                      ..-.++...|++++|...|++.++  ..|+......+-
T Consensus       162 ~~g~~~~~~~~~~~A~~~~~~al~--l~P~~~~~~~l~  197 (208)
T 3urz_A          162 RDGLSKLFTTRYEKARNSLQKVIL--RFPSTEAQKTLD  197 (208)
T ss_dssp             HHHHHHHHHHTHHHHHHHHHHHTT--TSCCHHHHHHHH
T ss_pred             HHHHHHHHccCHHHHHHHHHHHHH--hCCCHHHHHHHH
Confidence            445566678999999999999886  468876655543

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=99.04  E-value=2.1e-08  Score=70.30  Aligned_cols=161  Identities=10%  Similarity=0.008  Sum_probs=125.5

Q ss_pred             CcchhHHHHHHHHHHhcCChhHHHHHhccCCC--C-C---hhHHHHHHHHHhhcCChhHHHHHHHHhHhCCC--CCcHHH
Q 036068            3 NKDVISWTAIVSRYINRGQVDIARQCFDQMPE--R-D---YVLWTAMIDGYLRVNRFREALTLFQEMQTSNI--MGDEFT   74 (178)
Q Consensus         3 ~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~--~-~---~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~--~~~~~~   74 (178)
                      +.+...+-.+...+.+.|++++|.+.|+++.+  | +   ...+..+-..|.+.|++++|...|++..+..-  ......
T Consensus        12 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a   91 (261)
T 3qky_A           12 HSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQA   91 (261)
T ss_dssp             CSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHH
T ss_pred             CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHH
Confidence            45667777888999999999999999998864  3 3   56788888999999999999999999987631  122456


Q ss_pred             HHHHHHHhcc--------ccchhhHHHHHHHHHHhCcccchHHH-----------------HHHHHHHHhcCChhhhc--
Q 036068           75 IVSILTARAN--------LRALDLGEWIKTYIDKNKVKNDIFAG-----------------NALIDMYCICADVEKAQ--  127 (178)
Q Consensus        75 ~~~ll~~~~~--------~~~~~~a~~~~~~m~~~~~~~~~~~~-----------------~~ll~~~~~~~~~~~a~--  127 (178)
                      +..+..++.+        .|++++|...|+.+.+..+. +....                 ..+-..|.+.|++++|.  
T Consensus        92 ~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~  170 (261)
T 3qky_A           92 EYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPN-HELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVT  170 (261)
T ss_dssp             HHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTT-CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcC-chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHH
Confidence            6677778877        99999999999999987643 23333                 44567789999999997  


Q ss_pred             --------cc----hhhHHHHHHHHHhc----------CChhHHHHHHHHHHHcCCCCChh
Q 036068          128 --------KD----KFSWTTMIVGLAIS----------GNGDKALDMFSQMLRASIKPDEV  166 (178)
Q Consensus       128 --------~~----~~~~~~li~~~~~~----------~~~~~a~~~~~~m~~~g~~p~~~  166 (178)
                              |+    ...+..+...|...          |++++|...|++..+.  .|+..
T Consensus       171 ~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~  229 (261)
T 3qky_A          171 YEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQI--FPDSP  229 (261)
T ss_dssp             HHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHH--CTTCT
T ss_pred             HHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHH--CCCCh
Confidence                    33    34566777777765          8999999999999875  46653

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=99.04  E-value=1.1e-07  Score=68.45  Aligned_cols=166  Identities=11%  Similarity=0.105  Sum_probs=128.3

Q ss_pred             cchhHHHHHHHHHH-------hcCCh-------hHHHHHhccCCC---C-ChhHHHHHHHHHhhcCChhHHHHHHHHhHh
Q 036068            4 KDVISWTAIVSRYI-------NRGQV-------DIARQCFDQMPE---R-DYVLWTAMIDGYLRVNRFREALTLFQEMQT   65 (178)
Q Consensus         4 p~~~~~~~li~~~~-------~~~~~-------~~a~~~~~~m~~---~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~   65 (178)
                      -++..|..+...+.       +.|++       ++|..+|++..+   | +...|..+...+.+.|++++|.++|++..+
T Consensus        48 ~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~  127 (308)
T 2ond_A           48 HHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLA  127 (308)
T ss_dssp             TCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred             CCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Confidence            45566777777765       35886       899999997543   3 666899999999999999999999999988


Q ss_pred             CCCCCc-HH-HHHHHHHHhccccchhhHHHHHHHHHHhCcccchHHHHHHHHHH-HhcCChhhhc-----------cchh
Q 036068           66 SNIMGD-EF-TIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMY-CICADVEKAQ-----------KDKF  131 (178)
Q Consensus        66 ~~~~~~-~~-~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~-~~~~~~~~a~-----------~~~~  131 (178)
                      .  .|+ .. .|..+...+.+.|++++|..+|+...+... .+...|....... ...|+.+.|.           .+..
T Consensus       128 ~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p-~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p~~~~  204 (308)
T 2ond_A          128 I--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDAR-TRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPE  204 (308)
T ss_dssp             S--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTT-CCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHH
T ss_pred             c--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHH
Confidence            5  454 33 799999999999999999999999988754 3455555443332 2368888886           3678


Q ss_pred             hHHHHHHHHHhcCChhHHHHHHHHHHHcC-CCCC--hhHHHHHH
Q 036068          132 SWTTMIVGLAISGNGDKALDMFSQMLRAS-IKPD--EVAYVGVL  172 (178)
Q Consensus       132 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g-~~p~--~~t~~~li  172 (178)
                      .|..++..+.+.|++++|..+|++.++.. +.|+  ...|..++
T Consensus       205 ~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~  248 (308)
T 2ond_A          205 YVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFL  248 (308)
T ss_dssp             HHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHH
Confidence            89999999999999999999999999863 5664  33444433

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.03  E-value=4.3e-08  Score=64.90  Aligned_cols=135  Identities=12%  Similarity=0.059  Sum_probs=112.7

Q ss_pred             ChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHHhccccchhhHHHHHHHHHHhCcccchHHHHHHHH
Q 036068           36 DYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALID  115 (178)
Q Consensus        36 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~  115 (178)
                      +...|..+-..|.+.|++++|.+.|++..+.. +-+...+..+..++.+.|++++|...+......... +...+..+-.
T Consensus         4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~   81 (184)
T 3vtx_A            4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTT-SAEAYYILGS   81 (184)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCch-hHHHHHHHHH
Confidence            56789999999999999999999999988875 336788899999999999999999999999887644 5677888888


Q ss_pred             HHHhcCChhhhc-----------cchhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC-hhHHHHHHhh
Q 036068          116 MYCICADVEKAQ-----------KDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPD-EVAYVGVLSA  174 (178)
Q Consensus       116 ~~~~~~~~~~a~-----------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~t~~~li~a  174 (178)
                      .+...++++.+.           .+...+..+...+.+.|++++|.+.|++..+.  .|+ ...+..+-.+
T Consensus        82 ~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~lg~~  150 (184)
T 3vtx_A           82 ANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISI--KPGFIRAYQSIGLA  150 (184)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHh--cchhhhHHHHHHHH
Confidence            899999999887           36778888999999999999999999999875  353 4445444333

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=99.03  E-value=6.3e-09  Score=74.05  Aligned_cols=154  Identities=10%  Similarity=-0.006  Sum_probs=122.1

Q ss_pred             chhHHHHHHHHHHhcCChhHHHHHhccCCC-----------CChhHHHHHHHHHhhcCChhHHHHHHHHhHhC------C
Q 036068            5 DVISWTAIVSRYINRGQVDIARQCFDQMPE-----------RDYVLWTAMIDGYLRVNRFREALTLFQEMQTS------N   67 (178)
Q Consensus         5 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~-----------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~------~   67 (178)
                      ...++..+...+...|++++|...+++..+           .....+..+...|...|++++|.+.|++..+.      +
T Consensus        68 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~  147 (311)
T 3nf1_A           68 VATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGK  147 (311)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCC
Confidence            345688889999999999999999887642           14557888889999999999999999987654      2


Q ss_pred             C-CCcHHHHHHHHHHhccccchhhHHHHHHHHHHh------C-cccchHHHHHHHHHHHhcCChhhhc----------c-
Q 036068           68 I-MGDEFTIVSILTARANLRALDLGEWIKTYIDKN------K-VKNDIFAGNALIDMYCICADVEKAQ----------K-  128 (178)
Q Consensus        68 ~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~------~-~~~~~~~~~~ll~~~~~~~~~~~a~----------~-  128 (178)
                      - ......+..+...+.+.|++++|.++++...+.      + .+....++..+...|.+.|++++|.          + 
T Consensus       148 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  227 (311)
T 3nf1_A          148 DHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHE  227 (311)
T ss_dssp             TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred             CChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence            2 223466788888999999999999999888765      2 2224567888888999999999886          0 


Q ss_pred             -------------------------------------------------chhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 036068          129 -------------------------------------------------DKFSWTTMIVGLAISGNGDKALDMFSQMLR  158 (178)
Q Consensus       129 -------------------------------------------------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~  158 (178)
                                                                       +..+|..+...|.+.|++++|.++|++..+
T Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  306 (311)
T 3nf1_A          228 REFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMR  306 (311)
T ss_dssp             HHHC------CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             hcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence                                                             235577888999999999999999998875

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.03  E-value=1e-07  Score=67.05  Aligned_cols=150  Identities=13%  Similarity=-0.019  Sum_probs=115.0

Q ss_pred             chhHHHHHHHHHHh----cCChhHHHHHhccCCC-CChhHHHHHHHHHhh----cCChhHHHHHHHHhHhCCCCCcHHHH
Q 036068            5 DVISWTAIVSRYIN----RGQVDIARQCFDQMPE-RDYVLWTAMIDGYLR----VNRFREALTLFQEMQTSNIMGDEFTI   75 (178)
Q Consensus         5 ~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~-~~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~~~~~~~~~~   75 (178)
                      +...+..+-..+..    .+++++|...|++..+ .+...+..+-..|..    .+++++|.+.|++..+.+   +...+
T Consensus        37 ~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~  113 (273)
T 1ouv_A           37 ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNYSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGC  113 (273)
T ss_dssp             CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHH
T ss_pred             CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHH
Confidence            34566777788888    8888888888887653 367777778888888    888888888888887765   56677


Q ss_pred             HHHHHHhcc----ccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHh----cCChhhhc---------cchhhHHHHHH
Q 036068           76 VSILTARAN----LRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCI----CADVEKAQ---------KDKFSWTTMIV  138 (178)
Q Consensus        76 ~~ll~~~~~----~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~---------~~~~~~~~li~  138 (178)
                      ..+-..+.+    .+++++|...++...+.+   +...+..+-..|..    .+++++|.         .+...+..+-.
T Consensus       114 ~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~  190 (273)
T 1ouv_A          114 ASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGN  190 (273)
T ss_dssp             HHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence            777777777    888888888888888765   45566667777777    77888776         35667777777


Q ss_pred             HHHh----cCChhHHHHHHHHHHHcC
Q 036068          139 GLAI----SGNGDKALDMFSQMLRAS  160 (178)
Q Consensus       139 ~~~~----~~~~~~a~~~~~~m~~~g  160 (178)
                      .|..    .+++++|.+.|++..+.+
T Consensus       191 ~~~~g~~~~~~~~~A~~~~~~a~~~~  216 (273)
T 1ouv_A          191 MYHHGEGATKNFKEALARYSKACELE  216 (273)
T ss_dssp             HHHHTCSSCCCHHHHHHHHHHHHHTT
T ss_pred             HHHcCCCCCccHHHHHHHHHHHHhCC
Confidence            8888    888888888888887764

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.01  E-value=6.2e-08  Score=67.83  Aligned_cols=158  Identities=9%  Similarity=-0.013  Sum_probs=106.8

Q ss_pred             HHHHHHHHHHhcCChhHHHHHhccCCC---CChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHHhcc
Q 036068            8 SWTAIVSRYINRGQVDIARQCFDQMPE---RDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARAN   84 (178)
Q Consensus         8 ~~~~li~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~   84 (178)
                      .|..+...+.+.|++++|.+.|++..+   .+...|..+...|...|++++|.+.|++..+.. +.+...+..+...+..
T Consensus        76 ~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~  154 (272)
T 3u4t_A           76 DFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYY  154 (272)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHH
Confidence            366677777777777777777776542   355677777777777777777777777776652 2344555555523333


Q ss_pred             ccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHhcCC---hhhhc-------------cc------hhhHHHHHHHHHh
Q 036068           85 LRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICAD---VEKAQ-------------KD------KFSWTTMIVGLAI  142 (178)
Q Consensus        85 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~---~~~a~-------------~~------~~~~~~li~~~~~  142 (178)
                      .+++++|.+.++...+..+. +...+..+...+...|+   +++|.             |+      ...|..+...|.+
T Consensus       155 ~~~~~~A~~~~~~a~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~  233 (272)
T 3u4t_A          155 NKEYVKADSSFVKVLELKPN-IYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTI  233 (272)
T ss_dssp             TTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHH
Confidence            44788888888877776533 35666667777777776   55554             23      1467778888899


Q ss_pred             cCChhHHHHHHHHHHHcCCCCChhHHH
Q 036068          143 SGNGDKALDMFSQMLRASIKPDEVAYV  169 (178)
Q Consensus       143 ~~~~~~a~~~~~~m~~~g~~p~~~t~~  169 (178)
                      .|++++|.+.|++..+.  .|+.....
T Consensus       234 ~~~~~~A~~~~~~al~~--~p~~~~a~  258 (272)
T 3u4t_A          234 NRDKVKADAAWKNILAL--DPTNKKAI  258 (272)
T ss_dssp             TTCHHHHHHHHHHHHHH--CTTCHHHH
T ss_pred             cCCHHHHHHHHHHHHhc--CccHHHHH
Confidence            99999999999999875  46654433

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.00  E-value=3.8e-08  Score=64.54  Aligned_cols=136  Identities=15%  Similarity=0.072  Sum_probs=111.6

Q ss_pred             hhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHHhccccchhhHHHHHHHHHHhCcccchHHHHHHHHH
Q 036068           37 YVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDM  116 (178)
Q Consensus        37 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~  116 (178)
                      ...|..+...+...|++++|.+.|++..+.. +.+...+..+...+.+.|++++|...++...+... .+...+..+...
T Consensus         8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~   85 (186)
T 3as5_A            8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADAP-DNVKVATVLGLT   85 (186)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHH
Confidence            3457778888999999999999999987764 34678888999999999999999999999988753 467888999999


Q ss_pred             HHhcCChhhhc-----------cchhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhHHHHHHhhh
Q 036068          117 YCICADVEKAQ-----------KDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC  175 (178)
Q Consensus       117 ~~~~~~~~~a~-----------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~a~  175 (178)
                      +...|++++|.           .+...+..+...+...|++++|.+++++..+.. +.+...+..+...+
T Consensus        86 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~  154 (186)
T 3as5_A           86 YVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSY  154 (186)
T ss_dssp             HHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred             HHHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHH
Confidence            99999999987           367788888899999999999999999998763 23445555554443

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=98.99  E-value=2.8e-09  Score=81.46  Aligned_cols=152  Identities=11%  Similarity=-0.009  Sum_probs=130.4

Q ss_pred             cchhHHHHHHHHHHhcCChhHHHHHhccCC--CCChhHHHHHHHHHhhc---------CChhHHHHHHHHhHhCCCCCcH
Q 036068            4 KDVISWTAIVSRYINRGQVDIARQCFDQMP--ERDYVLWTAMIDGYLRV---------NRFREALTLFQEMQTSNIMGDE   72 (178)
Q Consensus         4 p~~~~~~~li~~~~~~~~~~~a~~~~~~m~--~~~~~~~~~li~~~~~~---------~~~~~a~~~~~~m~~~~~~~~~   72 (178)
                      .+...|..+...+.+.|++++|.+.|++..  .|+...+..+-..|...         |++++|.+.|++..+.. +-+.
T Consensus       135 ~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~  213 (474)
T 4abn_A          135 ELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDG  213 (474)
T ss_dssp             TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCH
T ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCH
Confidence            357789999999999999999999999875  36778888899999999         99999999999988875 3357


Q ss_pred             HHHHHHHHHhccc--------cchhhHHHHHHHHHHhCcc--cchHHHHHHHHHHHhcCChhhhc-----------cchh
Q 036068           73 FTIVSILTARANL--------RALDLGEWIKTYIDKNKVK--NDIFAGNALIDMYCICADVEKAQ-----------KDKF  131 (178)
Q Consensus        73 ~~~~~ll~~~~~~--------~~~~~a~~~~~~m~~~~~~--~~~~~~~~ll~~~~~~~~~~~a~-----------~~~~  131 (178)
                      ..|..+..++...        |++++|...|+...+....  .+...|..+-..|.+.|++++|.           .+..
T Consensus       214 ~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~  293 (474)
T 4abn_A          214 RSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPE  293 (474)
T ss_dssp             HHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred             HHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Confidence            8888899999888        9999999999999987542  47889999999999999999997           3566


Q ss_pred             hHHHHHHHHHhcCChhHHHHHHHHH
Q 036068          132 SWTTMIVGLAISGNGDKALDMFSQM  156 (178)
Q Consensus       132 ~~~~li~~~~~~~~~~~a~~~~~~m  156 (178)
                      .+..+...+...|++++|.+.+.++
T Consensus       294 a~~~l~~~~~~lg~~~eAi~~~~~~  318 (474)
T 4abn_A          294 PQQREQQLLEFLSRLTSLLESKGKT  318 (474)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhccc
Confidence            7888889999999999999765443

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=98.95  E-value=2.8e-08  Score=60.92  Aligned_cols=114  Identities=13%  Similarity=0.135  Sum_probs=92.8

Q ss_pred             cchhHHHHHHHHHHhcCChhHHHHHhccCCC---CChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHH
Q 036068            4 KDVISWTAIVSRYINRGQVDIARQCFDQMPE---RDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILT   80 (178)
Q Consensus         4 p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~   80 (178)
                      .+...|..+...+.+.|++++|.+.|+++.+   .+...+..+...+.+.|++++|...|+++.+.. +.+..++..+..
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~   85 (125)
T 1na0_A            7 NSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGN   85 (125)
T ss_dssp             CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHH
Confidence            3467888999999999999999999998753   367788899999999999999999999988764 346778889999


Q ss_pred             HhccccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHh
Q 036068           81 ARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCI  119 (178)
Q Consensus        81 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~  119 (178)
                      ++.+.|++++|...++...+..+. +...+..+-..+.+
T Consensus        86 ~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~  123 (125)
T 1na0_A           86 AYYKQGDYDEAIEYYQKALELDPN-NAEAKQNLGNAKQK  123 (125)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHH
T ss_pred             HHHHhcCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHh
Confidence            999999999999999998887543 45555555544443

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=98.92  E-value=4.9e-08  Score=75.97  Aligned_cols=139  Identities=9%  Similarity=-0.041  Sum_probs=97.9

Q ss_pred             cCChhHHHHHhccCCC---CChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHHhccccchhhHHHHH
Q 036068           19 RGQVDIARQCFDQMPE---RDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANLRALDLGEWIK   95 (178)
Q Consensus        19 ~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~   95 (178)
                      .|++++|.+.|++..+   .+...|..+-..+.+.|++++|.+.|++..+.. +-+...+..+..++.+.|++++|.+.+
T Consensus         2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~   80 (568)
T 2vsy_A            2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVLL   80 (568)
T ss_dssp             -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence            4677888888887654   256778888888888888888888888887764 235677888888888888888888888


Q ss_pred             HHHHHhCcccchHHHHHHHHHHHhcCChhhhc-----------cchhhHHHHHHHHHhc---CChhHHHHHHHHHHHc
Q 036068           96 TYIDKNKVKNDIFAGNALIDMYCICADVEKAQ-----------KDKFSWTTMIVGLAIS---GNGDKALDMFSQMLRA  159 (178)
Q Consensus        96 ~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~-----------~~~~~~~~li~~~~~~---~~~~~a~~~~~~m~~~  159 (178)
                      +...+... .+...+..+-..|.+.|++++|.           .+...+..+...+...   |+.++|.+.+++..+.
T Consensus        81 ~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~  157 (568)
T 2vsy_A           81 QQASDAAP-EHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ  157 (568)
T ss_dssp             HHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred             HHHHhcCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence            88887653 35677888888888888888887           3566778888888888   9999999999988875

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=98.92  E-value=8.5e-08  Score=63.32  Aligned_cols=148  Identities=15%  Similarity=0.029  Sum_probs=114.4

Q ss_pred             HHHHHHHHHHhcCChhHHHHHhccCCC---CChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHH-hc
Q 036068            8 SWTAIVSRYINRGQVDIARQCFDQMPE---RDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTA-RA   83 (178)
Q Consensus         8 ~~~~li~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~-~~   83 (178)
                      .+......+.+.|++++|...|++..+   .+...+..+-..+.+.|++++|...|++..+..  |+...+...... +.
T Consensus         8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~~   85 (176)
T 2r5s_A            8 QLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLIAKLELH   85 (176)
T ss_dssp             THHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHHHHHHH
Confidence            455677889999999999999999875   377789999999999999999999999987653  344333222211 12


Q ss_pred             cccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHhcCChhhhc----------cc---hhhHHHHHHHHHhcCChhHHH
Q 036068           84 NLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ----------KD---KFSWTTMIVGLAISGNGDKAL  150 (178)
Q Consensus        84 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~----------~~---~~~~~~li~~~~~~~~~~~a~  150 (178)
                      +.+...++...++...+..+. ++..+..+-..+...|++++|.          |+   ...+..+...+...|+.++|.
T Consensus        86 ~~~~~~~a~~~~~~al~~~P~-~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~  164 (176)
T 2r5s_A           86 QQAAESPELKRLEQELAANPD-NFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIA  164 (176)
T ss_dssp             HHHTSCHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHH
T ss_pred             hhcccchHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHH
Confidence            223344578888888876543 5788889999999999999987          33   457888999999999999999


Q ss_pred             HHHHHHHH
Q 036068          151 DMFSQMLR  158 (178)
Q Consensus       151 ~~~~~m~~  158 (178)
                      ..|++.+.
T Consensus       165 ~~y~~al~  172 (176)
T 2r5s_A          165 SKYRRQLY  172 (176)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99988764

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=98.90  E-value=2.7e-08  Score=79.21  Aligned_cols=144  Identities=8%  Similarity=-0.089  Sum_probs=123.4

Q ss_pred             HhcCChhHHHHHhccCC-----------CCChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHHhccc
Q 036068           17 INRGQVDIARQCFDQMP-----------ERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANL   85 (178)
Q Consensus        17 ~~~~~~~~a~~~~~~m~-----------~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~   85 (178)
                      ...|++++|.+.+++..           ..+...+..+-..+.+.|++++|.+.|++..+.. +-+...|..+-.++.+.
T Consensus       402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~  480 (681)
T 2pzi_A          402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELLT  480 (681)
T ss_dssp             TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHH
T ss_pred             ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHHc
Confidence            78999999999998765           2367788888999999999999999999988764 33667888888999999


Q ss_pred             cchhhHHHHHHHHHHhCcccchHHHHHHHHHHHhcCChhhhc-----------cchhhHHHHHHHHHhcCChhHHHHHHH
Q 036068           86 RALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ-----------KDKFSWTTMIVGLAISGNGDKALDMFS  154 (178)
Q Consensus        86 ~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~-----------~~~~~~~~li~~~~~~~~~~~a~~~~~  154 (178)
                      |++++|...|+...+..+. +...+..+-..|.+.|++++ .           .+...|..+...+.+.|++++|.+.|+
T Consensus       481 g~~~~A~~~~~~al~l~P~-~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~  558 (681)
T 2pzi_A          481 GDYDSATKHFTEVLDTFPG-ELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRTLD  558 (681)
T ss_dssp             TCHHHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            9999999999999988743 57888899999999999988 7           367788999999999999999999999


Q ss_pred             HHHHcCCCCCh
Q 036068          155 QMLRASIKPDE  165 (178)
Q Consensus       155 ~m~~~g~~p~~  165 (178)
                      +..+.  .|+.
T Consensus       559 ~al~l--~P~~  567 (681)
T 2pzi_A          559 EVPPT--SRHF  567 (681)
T ss_dssp             TSCTT--STTH
T ss_pred             hhccc--Cccc
Confidence            88753  5654

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=98.89  E-value=5.6e-08  Score=65.07  Aligned_cols=142  Identities=12%  Similarity=-0.001  Sum_probs=101.7

Q ss_pred             HhcCChhHHHH---HhccCCCCChhHHHHHHHHHhhcCChhHHHHHHHHhHh----CCCC-CcHHHHHHHHHHhccccch
Q 036068           17 INRGQVDIARQ---CFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQT----SNIM-GDEFTIVSILTARANLRAL   88 (178)
Q Consensus        17 ~~~~~~~~a~~---~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~----~~~~-~~~~~~~~ll~~~~~~~~~   88 (178)
                      ...|++++|.+   ++..-+......+..+-..+...|++++|...+++..+    .+.. ....++..+-..+...|++
T Consensus         3 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~   82 (203)
T 3gw4_A            3 FEAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNW   82 (203)
T ss_dssp             ----CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred             cccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCH
Confidence            46788999888   66554444667788888888899999999998888655    2222 2345677777888889999


Q ss_pred             hhHHHHHHHHHHh----Ccc--cchHHHHHHHHHHHhcCChhhhc-------------cc----hhhHHHHHHHHHhcCC
Q 036068           89 DLGEWIKTYIDKN----KVK--NDIFAGNALIDMYCICADVEKAQ-------------KD----KFSWTTMIVGLAISGN  145 (178)
Q Consensus        89 ~~a~~~~~~m~~~----~~~--~~~~~~~~ll~~~~~~~~~~~a~-------------~~----~~~~~~li~~~~~~~~  145 (178)
                      ++|...++...+.    +-.  .....+..+-..+...|++++|.             .+    ..++..+...+...|+
T Consensus        83 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~  162 (203)
T 3gw4_A           83 DAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKN  162 (203)
T ss_dssp             HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcC
Confidence            9998888776653    212  22455777788888899998886             11    2335677788889999


Q ss_pred             hhHHHHHHHHHHH
Q 036068          146 GDKALDMFSQMLR  158 (178)
Q Consensus       146 ~~~a~~~~~~m~~  158 (178)
                      +++|.+.+++..+
T Consensus       163 ~~~A~~~~~~al~  175 (203)
T 3gw4_A          163 LLEAQQHWLRARD  175 (203)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999988875

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=98.88  E-value=8.8e-08  Score=59.53  Aligned_cols=117  Identities=9%  Similarity=-0.042  Sum_probs=95.9

Q ss_pred             CcchhHHHHHHHHHHhcCChhHHHHHhccCCC---CChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHH
Q 036068            3 NKDVISWTAIVSRYINRGQVDIARQCFDQMPE---RDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSIL   79 (178)
Q Consensus         3 ~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll   79 (178)
                      +.++..|..+...+.+.|++++|...|++..+   .+...+..+...+...|++++|...+++..+.. +.+...+..+.
T Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la   91 (133)
T 2lni_A           13 PDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRKA   91 (133)
T ss_dssp             SCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred             cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHHH
Confidence            45667789999999999999999999998643   377888889999999999999999999988764 33677888899


Q ss_pred             HHhccccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHhcC
Q 036068           80 TARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICA  121 (178)
Q Consensus        80 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~  121 (178)
                      .++.+.|++++|.+.++...+.... +...+..+...+.+.|
T Consensus        92 ~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~  132 (133)
T 2lni_A           92 AALEAMKDYTKAMDVYQKALDLDSS-CKEAADGYQRCMMAQY  132 (133)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCGG-GTHHHHHHHHHHHHHT
T ss_pred             HHHHHHhhHHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHhc
Confidence            9999999999999999998877533 4566666666666554

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=98.88  E-value=1.2e-07  Score=75.91  Aligned_cols=135  Identities=13%  Similarity=-0.019  Sum_probs=115.4

Q ss_pred             ChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHHhccccchhhHHHHHHHHHHhCcccchHHHHHHHH
Q 036068           36 DYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALID  115 (178)
Q Consensus        36 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~  115 (178)
                      +...|+.|-..|.+.|++++|.+.|++..+.. +-+...+..+-.++.+.|++++|.+.|++..+.... +...|..+-.
T Consensus         8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~-~~~a~~nLg~   85 (723)
T 4gyw_A            8 HADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT-FADAYSNMGN   85 (723)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHH
Confidence            46689999999999999999999999988864 235788999999999999999999999999987643 5788999999


Q ss_pred             HHHhcCChhhhc-----------cchhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCh-hHHHHHHhh
Q 036068          116 MYCICADVEKAQ-----------KDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDE-VAYVGVLSA  174 (178)
Q Consensus       116 ~~~~~~~~~~a~-----------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~-~t~~~li~a  174 (178)
                      .|.+.|++++|.           .+...|+.+...+.+.|++++|++.|++.++.  .|+. ..+..+..+
T Consensus        86 ~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l--~P~~~~a~~~L~~~  154 (723)
T 4gyw_A           86 TLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKL--KPDFPDAYCNLAHC  154 (723)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHhhhhhH
Confidence            999999999997           36788999999999999999999999999875  4653 445544443

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=98.85  E-value=3.8e-08  Score=68.85  Aligned_cols=143  Identities=11%  Similarity=-0.009  Sum_probs=112.6

Q ss_pred             HhcCChhHHHHHhccCCC-------C----ChhHHHHHHHHHhhcCChhHHHHHHHHhHhC------CC-CCcHHHHHHH
Q 036068           17 INRGQVDIARQCFDQMPE-------R----DYVLWTAMIDGYLRVNRFREALTLFQEMQTS------NI-MGDEFTIVSI   78 (178)
Q Consensus        17 ~~~~~~~~a~~~~~~m~~-------~----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~------~~-~~~~~~~~~l   78 (178)
                      ...|++++|.+.|++..+       +    ...++..+-..|...|++++|...+++..+.      +- .....++..+
T Consensus        12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l   91 (283)
T 3edt_B           12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL   91 (283)
T ss_dssp             -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence            456777776666665432       2    4567888999999999999999999998654      22 2345688899


Q ss_pred             HHHhccccchhhHHHHHHHHHHhC-------cccchHHHHHHHHHHHhcCChhhhc-------------------cchhh
Q 036068           79 LTARANLRALDLGEWIKTYIDKNK-------VKNDIFAGNALIDMYCICADVEKAQ-------------------KDKFS  132 (178)
Q Consensus        79 l~~~~~~~~~~~a~~~~~~m~~~~-------~~~~~~~~~~ll~~~~~~~~~~~a~-------------------~~~~~  132 (178)
                      ..++...|++++|...++...+..       .+....++..+...|...|++++|.                   ....+
T Consensus        92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  171 (283)
T 3edt_B           92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT  171 (283)
T ss_dssp             HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred             HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence            999999999999999998887641       1334677888999999999999987                   12456


Q ss_pred             HHHHHHHHHhcCChhHHHHHHHHHHHc
Q 036068          133 WTTMIVGLAISGNGDKALDMFSQMLRA  159 (178)
Q Consensus       133 ~~~li~~~~~~~~~~~a~~~~~~m~~~  159 (178)
                      +..+...+...|++++|.+++++..+.
T Consensus       172 ~~~la~~~~~~g~~~~A~~~~~~~l~~  198 (283)
T 3edt_B          172 KNNLASCYLKQGKYQDAETLYKEILTR  198 (283)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            788889999999999999999998863

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=98.85  E-value=2.8e-07  Score=63.25  Aligned_cols=154  Identities=7%  Similarity=-0.048  Sum_probs=114.5

Q ss_pred             chhHHHHHHHHHHhcCChhHHHHHhccCCC--CC----hhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCC-CcH-HHHH
Q 036068            5 DVISWTAIVSRYINRGQVDIARQCFDQMPE--RD----YVLWTAMIDGYLRVNRFREALTLFQEMQTSNIM-GDE-FTIV   76 (178)
Q Consensus         5 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~--~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~-~~~-~~~~   76 (178)
                      +...+..+...+.+.|++++|...|+++.+  |+    ...+..+..+|.+.|++++|.+.|++..+..-. +.. ..+.
T Consensus         3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~   82 (225)
T 2yhc_A            3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY   82 (225)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence            445566678889999999999999998863  32    346777889999999999999999998875421 111 1333


Q ss_pred             HHHHHhc------------------cccchhhHHHHHHHHHHhCcccchHHH-----------------HHHHHHHHhcC
Q 036068           77 SILTARA------------------NLRALDLGEWIKTYIDKNKVKNDIFAG-----------------NALIDMYCICA  121 (178)
Q Consensus        77 ~ll~~~~------------------~~~~~~~a~~~~~~m~~~~~~~~~~~~-----------------~~ll~~~~~~~  121 (178)
                      .+-.++.                  ..|++++|...|+.+.+..+. +...+                 -.+-..|.+.|
T Consensus        83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~-~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~  161 (225)
T 2yhc_A           83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPN-SQYTTDATKRLVFLKDRLAKYEYSVAEYYTERG  161 (225)
T ss_dssp             HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTT-CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcC-ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            3333333                  367899999999999887543 23222                 23445688899


Q ss_pred             Chhhhc----------cch----hhHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 036068          122 DVEKAQ----------KDK----FSWTTMIVGLAISGNGDKALDMFSQMLRA  159 (178)
Q Consensus       122 ~~~~a~----------~~~----~~~~~li~~~~~~~~~~~a~~~~~~m~~~  159 (178)
                      ++++|.          |+.    ..+..+...+.+.|+.++|.+.++++...
T Consensus       162 ~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~  213 (225)
T 2yhc_A          162 AWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAAN  213 (225)
T ss_dssp             CHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHC
T ss_pred             cHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh
Confidence            999987          432    46788889999999999999999998876

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=98.85  E-value=3e-07  Score=70.91  Aligned_cols=152  Identities=10%  Similarity=0.086  Sum_probs=117.5

Q ss_pred             chhHHHHHHHHHHh-------cCChh-------HHHHHhccCCC---C-ChhHHHHHHHHHhhcCChhHHHHHHHHhHhC
Q 036068            5 DVISWTAIVSRYIN-------RGQVD-------IARQCFDQMPE---R-DYVLWTAMIDGYLRVNRFREALTLFQEMQTS   66 (178)
Q Consensus         5 ~~~~~~~li~~~~~-------~~~~~-------~a~~~~~~m~~---~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~   66 (178)
                      +...|......+.+       .|+++       +|.++|++..+   | +...|..+...+.+.|++++|.++|++..+.
T Consensus       271 ~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~  350 (530)
T 2ooe_A          271 HPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI  350 (530)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS
T ss_pred             CHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCc
Confidence            45667777777765       68887       88999987653   4 6778889999999999999999999998885


Q ss_pred             CCCCc--HHHHHHHHHHhccccchhhHHHHHHHHHHhCcccchHHHHHHHH-HHHhcCChhhhc----------c-chhh
Q 036068           67 NIMGD--EFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALID-MYCICADVEKAQ----------K-DKFS  132 (178)
Q Consensus        67 ~~~~~--~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~-~~~~~~~~~~a~----------~-~~~~  132 (178)
                        .|+  ...|..+...+.+.|++++|.++|+...+.... +...+-.... .+...|+.+.|.          | +...
T Consensus       351 --~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~-~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~  427 (530)
T 2ooe_A          351 --EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDART-RHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEY  427 (530)
T ss_dssp             --SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTC-CTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHH
T ss_pred             --cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCC-chHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHH
Confidence              454  257888888888999999999999988876432 2333332222 234678888876          3 5788


Q ss_pred             HHHHHHHHHhcCChhHHHHHHHHHHHc
Q 036068          133 WTTMIVGLAISGNGDKALDMFSQMLRA  159 (178)
Q Consensus       133 ~~~li~~~~~~~~~~~a~~~~~~m~~~  159 (178)
                      |..++..+.+.|+.++|..+|++....
T Consensus       428 ~~~~~~~~~~~g~~~~Ar~~~~~al~~  454 (530)
T 2ooe_A          428 VLAYIDYLSHLNEDNNTRVLFERVLTS  454 (530)
T ss_dssp             HHHHHHHHTTTTCHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHhCCCHhhHHHHHHHHHhc
Confidence            899999999999999999999999886

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=98.84  E-value=1.1e-07  Score=67.77  Aligned_cols=151  Identities=12%  Similarity=-0.023  Sum_probs=114.9

Q ss_pred             chhHHHHHHHHHHhcCChhHHHHHhccCCC--C-ChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHH-HH
Q 036068            5 DVISWTAIVSRYINRGQVDIARQCFDQMPE--R-DYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSI-LT   80 (178)
Q Consensus         5 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l-l~   80 (178)
                      +...+..+...+.+.|++++|...|++..+  | +...+..+...+.+.|++++|...+++.....  |+....... ..
T Consensus       116 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~~~~~~  193 (287)
T 3qou_A          116 EEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQD--QDTRYQGLVAQI  193 (287)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGG--CSHHHHHHHHHH
T ss_pred             chhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhh--cchHHHHHHHHH
Confidence            344566677888889999999999998753  3 66788888889999999999999999887653  444332222 22


Q ss_pred             HhccccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHhcCChhhhc----------c---chhhHHHHHHHHHhcCChh
Q 036068           81 ARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ----------K---DKFSWTTMIVGLAISGNGD  147 (178)
Q Consensus        81 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~----------~---~~~~~~~li~~~~~~~~~~  147 (178)
                      .+.+.++.++|...++...+..+ .+...+..+-..|...|++++|.          |   +...+..+...+...|+.+
T Consensus       194 ~l~~~~~~~~a~~~l~~al~~~P-~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~  272 (287)
T 3qou_A          194 ELLXQAADTPEIQQLQQQVAENP-EDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGD  272 (287)
T ss_dssp             HHHHHHTSCHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTC
T ss_pred             HHHhhcccCccHHHHHHHHhcCC-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCC
Confidence            35677778888888888887764 36778888888899999999887          2   2567888888888899999


Q ss_pred             HHHHHHHHHHH
Q 036068          148 KALDMFSQMLR  158 (178)
Q Consensus       148 ~a~~~~~~m~~  158 (178)
                      +|...|++-+.
T Consensus       273 ~a~~~~r~al~  283 (287)
T 3qou_A          273 ALASXYRRQLY  283 (287)
T ss_dssp             HHHHHHHHHHH
T ss_pred             cHHHHHHHHHH
Confidence            88888877653

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=98.84  E-value=3.6e-07  Score=62.52  Aligned_cols=126  Identities=11%  Similarity=-0.016  Sum_probs=107.8

Q ss_pred             ChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHHhccccchhhHHHHHHHHHHhCcccchHHHHHHHH
Q 036068           36 DYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALID  115 (178)
Q Consensus        36 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~  115 (178)
                      |...+...-..+.+.|++++|...|++..+..-.++...+..+..++.+.|++++|...++...+..+. +..++..+-.
T Consensus         6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~   84 (228)
T 4i17_A            6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYN-LANAYIGKSA   84 (228)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCS-HHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcc-hHHHHHHHHH
Confidence            567788888899999999999999999988764367777777999999999999999999999987644 6788999999


Q ss_pred             HHHhcCChhhhc----------c-ch-------hhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC
Q 036068          116 MYCICADVEKAQ----------K-DK-------FSWTTMIVGLAISGNGDKALDMFSQMLRASIKPD  164 (178)
Q Consensus       116 ~~~~~~~~~~a~----------~-~~-------~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~  164 (178)
                      .|.+.|++++|.          | +.       ..|..+-..+...|++++|.+.|++.++.  .|+
T Consensus        85 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~  149 (228)
T 4i17_A           85 AYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV--TSK  149 (228)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--SCH
T ss_pred             HHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc--CCC
Confidence            999999999998          3 33       45777888889999999999999999864  566

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=98.84  E-value=2.2e-07  Score=66.27  Aligned_cols=150  Identities=9%  Similarity=-0.073  Sum_probs=114.5

Q ss_pred             HHHHHHHHHhcCChhHHHHHhccCCC-----CC----hhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCC-Cc----HHH
Q 036068            9 WTAIVSRYINRGQVDIARQCFDQMPE-----RD----YVLWTAMIDGYLRVNRFREALTLFQEMQTSNIM-GD----EFT   74 (178)
Q Consensus         9 ~~~li~~~~~~~~~~~a~~~~~~m~~-----~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~-~~----~~~   74 (178)
                      +...+..+.+.|++++|.+++++..+     ++    ...+..+...+...+++++|...|++....... ++    ..+
T Consensus        78 l~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~  157 (293)
T 3u3w_A           78 FKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYI  157 (293)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHH
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHH
Confidence            34457888999999999999998653     12    123334666777888999999999998873222 22    346


Q ss_pred             HHHHHHHhccccchhhHHHHHHHHHH----h-Cccc-chHHHHHHHHHHHhcCChhhhcc-----------------chh
Q 036068           75 IVSILTARANLRALDLGEWIKTYIDK----N-KVKN-DIFAGNALIDMYCICADVEKAQK-----------------DKF  131 (178)
Q Consensus        75 ~~~ll~~~~~~~~~~~a~~~~~~m~~----~-~~~~-~~~~~~~ll~~~~~~~~~~~a~~-----------------~~~  131 (178)
                      ++.+-.+|...|++++|...++...+    . +..+ ...++..+-..|.+.|++++|..                 -..
T Consensus       158 ~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~  237 (293)
T 3u3w_A          158 ENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQ  237 (293)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHH
Confidence            88999999999999999999988774    1 2222 24578899999999999999981                 156


Q ss_pred             hHHHHHHHHHhcCC-hhHHHHHHHHHHH
Q 036068          132 SWTTMIVGLAISGN-GDKALDMFSQMLR  158 (178)
Q Consensus       132 ~~~~li~~~~~~~~-~~~a~~~~~~m~~  158 (178)
                      +|..+-..+.+.|+ +++|.+.|++...
T Consensus       238 ~~~~lg~~~~~~g~~~~~A~~~~~~Al~  265 (293)
T 3u3w_A          238 LYYQRGECLRKLEYEEAEIEDAYKKASF  265 (293)
T ss_dssp             HHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence            78888899999995 6999999988865

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=98.81  E-value=1.1e-07  Score=58.64  Aligned_cols=118  Identities=7%  Similarity=-0.066  Sum_probs=97.7

Q ss_pred             cchhHHHHHHHHHHhcCChhHHHHHhccCCC---CChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHH
Q 036068            4 KDVISWTAIVSRYINRGQVDIARQCFDQMPE---RDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILT   80 (178)
Q Consensus         4 p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~   80 (178)
                      .+...|..+...+...|++++|...|++..+   .+...+..+...+...|++++|...+++..+.. +.+...+..+..
T Consensus        10 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~   88 (131)
T 2vyi_A           10 AEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGL   88 (131)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred             hhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHH
Confidence            4566788899999999999999999998653   377788889999999999999999999988764 335778888889


Q ss_pred             HhccccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHhcCCh
Q 036068           81 ARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADV  123 (178)
Q Consensus        81 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~  123 (178)
                      ++.+.|++++|...++...+... .+...+..+...+.+.|+.
T Consensus        89 ~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~~l~~~~~~~~~~  130 (131)
T 2vyi_A           89 ALSSLNKHVEAVAYYKKALELDP-DNETYKSNLKIAELKLREA  130 (131)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHTTC
T ss_pred             HHHHhCCHHHHHHHHHHHHhcCc-cchHHHHHHHHHHHHHhcC
Confidence            99999999999999999888764 3566777777777777764

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=98.79  E-value=1.3e-07  Score=69.78  Aligned_cols=153  Identities=11%  Similarity=-0.035  Sum_probs=119.6

Q ss_pred             hhHHHHHHHHHHhcCChhHHHHHhccCCC-----C----ChhHHHHHHHHHhhcCChhHHHHHHHHhHhC----CC-CCc
Q 036068            6 VISWTAIVSRYINRGQVDIARQCFDQMPE-----R----DYVLWTAMIDGYLRVNRFREALTLFQEMQTS----NI-MGD   71 (178)
Q Consensus         6 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~-----~----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----~~-~~~   71 (178)
                      ..+++.+-..+...|++++|.+.|++..+     +    ...++..+-..|...|++++|.+.|++..+.    +. +..
T Consensus       184 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~  263 (383)
T 3ulq_A          184 LQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSL  263 (383)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhH
Confidence            45788899999999999999999987653     1    2247888899999999999999999997662    33 334


Q ss_pred             HHHHHHHHHHhccccchhhHHHHHHHHHHh----CcccchHHHHHHHHHHHhcCC---hhhhc----------cchhhHH
Q 036068           72 EFTIVSILTARANLRALDLGEWIKTYIDKN----KVKNDIFAGNALIDMYCICAD---VEKAQ----------KDKFSWT  134 (178)
Q Consensus        72 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~----~~~~~~~~~~~ll~~~~~~~~---~~~a~----------~~~~~~~  134 (178)
                      ..++..+..++.+.|++++|...++...+.    +-+.....+..+-..|...|+   .++|.          .....+.
T Consensus       264 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~  343 (383)
T 3ulq_A          264 PQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKMLYADLEDFAI  343 (383)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcCHHHHHHHHH
Confidence            678888999999999999999999877653    222233446677777888888   55554          2344677


Q ss_pred             HHHHHHHhcCChhHHHHHHHHHHH
Q 036068          135 TMIVGLAISGNGDKALDMFSQMLR  158 (178)
Q Consensus       135 ~li~~~~~~~~~~~a~~~~~~m~~  158 (178)
                      .+...|...|++++|.+.|++..+
T Consensus       344 ~la~~y~~~g~~~~A~~~~~~al~  367 (383)
T 3ulq_A          344 DVAKYYHERKNFQKASAYFLKVEQ  367 (383)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHH
Confidence            888999999999999999999876

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=98.77  E-value=2e-07  Score=66.54  Aligned_cols=151  Identities=6%  Similarity=-0.072  Sum_probs=117.4

Q ss_pred             HHHHHHHHHHhcCChhHHHHHhccCCC-------C--ChhHHHHHHHHHhhcCChhHHHHHHHHhHhC----CCCC-cHH
Q 036068            8 SWTAIVSRYINRGQVDIARQCFDQMPE-------R--DYVLWTAMIDGYLRVNRFREALTLFQEMQTS----NIMG-DEF   73 (178)
Q Consensus         8 ~~~~li~~~~~~~~~~~a~~~~~~m~~-------~--~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----~~~~-~~~   73 (178)
                      .|......|...|++++|.+.|++..+       +  ...+|+.+-..|.+.|++++|...|++..+.    |-.. -..
T Consensus        39 ~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~  118 (292)
T 1qqe_A           39 LCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGAN  118 (292)
T ss_dssp             HHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence            577778888899999999888876542       1  2568889999999999999999999887543    2111 145


Q ss_pred             HHHHHHHHhccc-cchhhHHHHHHHHHHhCccc-----chHHHHHHHHHHHhcCChhhhc----------cch-h-----
Q 036068           74 TIVSILTARANL-RALDLGEWIKTYIDKNKVKN-----DIFAGNALIDMYCICADVEKAQ----------KDK-F-----  131 (178)
Q Consensus        74 ~~~~ll~~~~~~-~~~~~a~~~~~~m~~~~~~~-----~~~~~~~ll~~~~~~~~~~~a~----------~~~-~-----  131 (178)
                      ++..+-..|.+. |++++|...++...+.....     ...++..+-..|.+.|++++|.          |+. .     
T Consensus       119 ~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  198 (292)
T 1qqe_A          119 FKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSL  198 (292)
T ss_dssp             HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGH
T ss_pred             HHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHH
Confidence            788888899996 99999999998877643211     1456888899999999999997          221 1     


Q ss_pred             --hHHHHHHHHHhcCChhHHHHHHHHHHH
Q 036068          132 --SWTTMIVGLAISGNGDKALDMFSQMLR  158 (178)
Q Consensus       132 --~~~~li~~~~~~~~~~~a~~~~~~m~~  158 (178)
                        .|..+...+...|++++|...|++.++
T Consensus       199 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~  227 (292)
T 1qqe_A          199 KDYFLKKGLCQLAATDAVAAARTLQEGQS  227 (292)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHGGGC
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence              467777888999999999999999875

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=98.77  E-value=8e-08  Score=61.95  Aligned_cols=106  Identities=6%  Similarity=-0.142  Sum_probs=69.5

Q ss_pred             HHHhcCChhHHHHHhccCCCC---ChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHHhccccchhhH
Q 036068           15 RYINRGQVDIARQCFDQMPER---DYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANLRALDLG   91 (178)
Q Consensus        15 ~~~~~~~~~~a~~~~~~m~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a   91 (178)
                      .+...|++++|++.+.+....   +...+-.+-..|.+.|++++|.+.|++..+.. +-+..+|..+-.++.+.|++++|
T Consensus         6 ~~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~~A   84 (150)
T 4ga2_A            6 MRRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ-ERDPKAHRFLGLLYELEENTDKA   84 (150)
T ss_dssp             -CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCchHHH
Confidence            344567778888777766543   34455567777888888888888888877764 23567777888888888888888


Q ss_pred             HHHHHHHHHhCcccchHHHHHHHHHHHhcCC
Q 036068           92 EWIKTYIDKNKVKNDIFAGNALIDMYCICAD  122 (178)
Q Consensus        92 ~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~  122 (178)
                      ...|+...+..+. ++.++..+-..|.+.|+
T Consensus        85 ~~~~~~al~~~p~-~~~~~~~la~~~~~~~~  114 (150)
T 4ga2_A           85 VECYRRSVELNPT-QKDLVLKIAELLCKNDV  114 (150)
T ss_dssp             HHHHHHHHHHCTT-CHHHHHHHHHHHHHHCS
T ss_pred             HHHHHHHHHhCCC-CHHHHHHHHHHHHHcCC
Confidence            8888887776532 23344333333333333

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=98.77  E-value=3.1e-07  Score=66.10  Aligned_cols=150  Identities=13%  Similarity=0.080  Sum_probs=90.7

Q ss_pred             cchhHHHHHHHHHHhcCChhHHHHHhccCCC-----CChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCC-----cHH
Q 036068            4 KDVISWTAIVSRYINRGQVDIARQCFDQMPE-----RDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMG-----DEF   73 (178)
Q Consensus         4 p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~-----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~-----~~~   73 (178)
                      ++..++..+..++...|++++|++++.+...     -+...+-.++..+.+.|+.+.|.+.+++|.+.  .|     +..
T Consensus        98 ~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~--~~d~~~~~d~  175 (310)
T 3mv2_B           98 NSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNA--IEDTVSGDNE  175 (310)
T ss_dssp             CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCHHHHHHHH
T ss_pred             CCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CccccccchH
Confidence            4444555677777777888888777776522     25556777777777788888888888777664  45     245


Q ss_pred             HHHHHHHHhc----cccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHhcCChhhhcc---------------------
Q 036068           74 TIVSILTARA----NLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQK---------------------  128 (178)
Q Consensus        74 ~~~~ll~~~~----~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~---------------------  128 (178)
                      +...+..++.    ..+++++|..+|+++.+...  +..+...++.++.+.|++++|..                     
T Consensus       176 ~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p--~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~  253 (310)
T 3mv2_B          176 MILNLAESYIKFATNKETATSNFYYYEELSQTFP--TWKTQLGLLNLHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLY  253 (310)
T ss_dssp             HHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSC--SHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSS
T ss_pred             HHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCC--CcccHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccccccCCCC
Confidence            5555555522    23377777778777765532  22222333336777777777761                     


Q ss_pred             chhhHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 036068          129 DKFSWTTMIVGLAISGNGDKALDMFSQMLRA  159 (178)
Q Consensus       129 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~  159 (178)
                      |..+.-.+|......|+  +|.+++.++++.
T Consensus       254 ~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~  282 (310)
T 3mv2_B          254 KPTFLANQITLALMQGL--DTEDLTNQLVKL  282 (310)
T ss_dssp             HHHHHHHHHHHHHHTTC--TTHHHHHHHHHT
T ss_pred             CHHHHHHHHHHHHHhCh--HHHHHHHHHHHh
Confidence            33334233444444555  677777777764

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=98.71  E-value=6.4e-07  Score=63.88  Aligned_cols=152  Identities=8%  Similarity=-0.092  Sum_probs=114.1

Q ss_pred             hHHHHHHHHHHhcCChhHHHHHhccCCC---CC------hhHHHHHHHHHhhcCChhHHHHHHHHhHhCCC---CCc--H
Q 036068            7 ISWTAIVSRYINRGQVDIARQCFDQMPE---RD------YVLWTAMIDGYLRVNRFREALTLFQEMQTSNI---MGD--E   72 (178)
Q Consensus         7 ~~~~~li~~~~~~~~~~~a~~~~~~m~~---~~------~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~---~~~--~   72 (178)
                      ..+...+..+...|++++|.+.+++..+   .+      ...+..+...+...|++++|...+++..+...   .+.  .
T Consensus        76 ~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~  155 (293)
T 2qfc_A           76 KQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNL  155 (293)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHH
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHH
Confidence            3455678889999999999999875432   11      12234455667788999999999998765321   122  4


Q ss_pred             HHHHHHHHHhccccchhhHHHHHHHHHH---hCc-cc--chHHHHHHHHHHHhcCChhhhc----------cc-------
Q 036068           73 FTIVSILTARANLRALDLGEWIKTYIDK---NKV-KN--DIFAGNALIDMYCICADVEKAQ----------KD-------  129 (178)
Q Consensus        73 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~---~~~-~~--~~~~~~~ll~~~~~~~~~~~a~----------~~-------  129 (178)
                      .+++.+-..|...|++++|...++...+   ... .+  ...++..+-..|.+.|++++|.          ++       
T Consensus       156 ~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~  235 (293)
T 2qfc_A          156 YIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALI  235 (293)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHH
Confidence            5888899999999999999999988763   221 11  2368889999999999999998          22       


Q ss_pred             hhhHHHHHHHHHhcCChhHH-HHHHHHHHH
Q 036068          130 KFSWTTMIVGLAISGNGDKA-LDMFSQMLR  158 (178)
Q Consensus       130 ~~~~~~li~~~~~~~~~~~a-~~~~~~m~~  158 (178)
                      ..+|..+...|.+.|++++| ...+++...
T Consensus       236 ~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~  265 (293)
T 2qfc_A          236 GQLYYQRGECLRKLEYEEAEIEDAYKKASF  265 (293)
T ss_dssp             HHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence            56788888999999999999 777877653

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=98.71  E-value=2.6e-07  Score=57.14  Aligned_cols=98  Identities=14%  Similarity=0.186  Sum_probs=85.0

Q ss_pred             cchhHHHHHHHHHHhcCChhHHHHHhccCCC---CChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHH
Q 036068            4 KDVISWTAIVSRYINRGQVDIARQCFDQMPE---RDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILT   80 (178)
Q Consensus         4 p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~   80 (178)
                      .+...|..+...+...|++++|...|+++.+   .+...+..+...+...|++++|.+.++++.+.. +.+...+..+..
T Consensus        33 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~  111 (136)
T 2fo7_A           33 RSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGN  111 (136)
T ss_dssp             TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred             cchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHH
Confidence            4667788899999999999999999998753   467788889999999999999999999998765 335778888999


Q ss_pred             HhccccchhhHHHHHHHHHHhC
Q 036068           81 ARANLRALDLGEWIKTYIDKNK  102 (178)
Q Consensus        81 ~~~~~~~~~~a~~~~~~m~~~~  102 (178)
                      ++.+.|++++|...++.+.+..
T Consensus       112 ~~~~~~~~~~A~~~~~~~~~~~  133 (136)
T 2fo7_A          112 AYYKQGDYDEAIEYYQKALELD  133 (136)
T ss_dssp             HHHTTTCHHHHHHHHHHHHHHS
T ss_pred             HHHHHccHHHHHHHHHHHHccC
Confidence            9999999999999999888764

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=98.71  E-value=2e-07  Score=55.96  Aligned_cols=101  Identities=8%  Similarity=0.045  Sum_probs=86.3

Q ss_pred             CcchhHHHHHHHHHHhcCChhHHHHHhccCCC---CChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCC--cHHHHHH
Q 036068            3 NKDVISWTAIVSRYINRGQVDIARQCFDQMPE---RDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMG--DEFTIVS   77 (178)
Q Consensus         3 ~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~--~~~~~~~   77 (178)
                      +.+...|..+...+.+.|++++|...|++..+   .+...|..+-..+...|++++|...|++..+.. +.  +...+..
T Consensus         3 p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~   81 (112)
T 2kck_A            3 DQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAA   81 (112)
T ss_dssp             CSSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHH
T ss_pred             CCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHH
Confidence            45667788899999999999999999997653   467788889999999999999999999988764 23  5788889


Q ss_pred             HHHHhccc-cchhhHHHHHHHHHHhCcc
Q 036068           78 ILTARANL-RALDLGEWIKTYIDKNKVK  104 (178)
Q Consensus        78 ll~~~~~~-~~~~~a~~~~~~m~~~~~~  104 (178)
                      +..++.+. |++++|.+.++...+....
T Consensus        82 l~~~~~~~~~~~~~A~~~~~~~~~~~p~  109 (112)
T 2kck_A           82 KADALRYIEGKEVEAEIAEARAKLEHHH  109 (112)
T ss_dssp             HHHHHTTCSSCSHHHHHHHHHHGGGCCC
T ss_pred             HHHHHHHHhCCHHHHHHHHHHHhhcccC
Confidence            99999999 9999999999999887654

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=98.69  E-value=8.8e-07  Score=68.31  Aligned_cols=154  Identities=10%  Similarity=0.041  Sum_probs=122.2

Q ss_pred             cchhHHHHHHHHHHhcCChhHHHHHhccCCC--C-Ch-hHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHH
Q 036068            4 KDVISWTAIVSRYINRGQVDIARQCFDQMPE--R-DY-VLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSIL   79 (178)
Q Consensus         4 p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~--~-~~-~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll   79 (178)
                      .+...|..++..+.+.|++++|.++|++..+  | +. ..|......+.+.|+.++|.++|++..+.. +.+...|....
T Consensus       319 ~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~-~~~~~~~~~~a  397 (530)
T 2ooe_A          319 KNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAA  397 (530)
T ss_dssp             SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCT-TCCTHHHHHHH
T ss_pred             ccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhcc-CCchHHHHHHH
Confidence            4577899999999999999999999998753  3 33 478889998999999999999999988753 22333333222


Q ss_pred             HH-hccccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHhcCChhhhc----------c-c----hhhHHHHHHHHHhc
Q 036068           80 TA-RANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ----------K-D----KFSWTTMIVGLAIS  143 (178)
Q Consensus        80 ~~-~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~----------~-~----~~~~~~li~~~~~~  143 (178)
                      .. +...|++++|..+|+...+..+ .++..|..++..+.+.|+.+.|.          | +    ...|...+.-....
T Consensus       398 ~~~~~~~~~~~~A~~~~e~al~~~p-~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~  476 (530)
T 2ooe_A          398 LMEYYCSKDKSVAFKIFELGLKKYG-DIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNI  476 (530)
T ss_dssp             HHHHHHTCCHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHS
T ss_pred             HHHHHHcCChhHHHHHHHHHHHHCC-CCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHc
Confidence            22 3358999999999998887653 36889999999999999999886          2 2    23788888888889


Q ss_pred             CChhHHHHHHHHHHHc
Q 036068          144 GNGDKALDMFSQMLRA  159 (178)
Q Consensus       144 ~~~~~a~~~~~~m~~~  159 (178)
                      |+.+.+..+++++.+.
T Consensus       477 G~~~~~~~~~~r~~~~  492 (530)
T 2ooe_A          477 GDLASILKVEKRRFTA  492 (530)
T ss_dssp             SCHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHH
Confidence            9999999999998864

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=98.69  E-value=5.8e-08  Score=72.04  Aligned_cols=151  Identities=13%  Similarity=0.097  Sum_probs=84.9

Q ss_pred             HHHHHHHHHHhcCChhHHHHHhccCCC--C-Ch----hHHHHHHHHHhhcCChhHHHHHHHHhHhC----C-CCCcHHHH
Q 036068            8 SWTAIVSRYINRGQVDIARQCFDQMPE--R-DY----VLWTAMIDGYLRVNRFREALTLFQEMQTS----N-IMGDEFTI   75 (178)
Q Consensus         8 ~~~~li~~~~~~~~~~~a~~~~~~m~~--~-~~----~~~~~li~~~~~~~~~~~a~~~~~~m~~~----~-~~~~~~~~   75 (178)
                      .+..+...+.+.|++++|...|++..+  | +.    ..|..+...|...|++++|...+++..+.    + .......+
T Consensus        50 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~  129 (411)
T 4a1s_A           50 ELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSS  129 (411)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHH
Confidence            344555666677777777777766542  2 22    35666666666777777777776665432    1 11223455


Q ss_pred             HHHHHHhccccchhhHHHHHHHHHHhC-----cccchHHHHHHHHHHHhcCC-----------------hhhhc------
Q 036068           76 VSILTARANLRALDLGEWIKTYIDKNK-----VKNDIFAGNALIDMYCICAD-----------------VEKAQ------  127 (178)
Q Consensus        76 ~~ll~~~~~~~~~~~a~~~~~~m~~~~-----~~~~~~~~~~ll~~~~~~~~-----------------~~~a~------  127 (178)
                      ..+...+...|++++|...++...+..     ......++..+-..|...|+                 +++|.      
T Consensus       130 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~a  209 (411)
T 4a1s_A          130 GNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQEN  209 (411)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHH
Confidence            566666666677777766666554331     11223455556666666666                 55554      


Q ss_pred             -----------cchhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 036068          128 -----------KDKFSWTTMIVGLAISGNGDKALDMFSQMLR  158 (178)
Q Consensus       128 -----------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~  158 (178)
                                 .....+..+...+...|++++|.+.+++..+
T Consensus       210 l~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  251 (411)
T 4a1s_A          210 LKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLR  251 (411)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence                       0122455555556666666666666655543

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=98.66  E-value=1.7e-07  Score=60.73  Aligned_cols=93  Identities=12%  Similarity=0.078  Sum_probs=42.0

Q ss_pred             HHHHHHHHHHhcCChhHHHHHhccCCC--C-ChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHHhcc
Q 036068            8 SWTAIVSRYINRGQVDIARQCFDQMPE--R-DYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARAN   84 (178)
Q Consensus         8 ~~~~li~~~~~~~~~~~a~~~~~~m~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~   84 (178)
                      .+..+-..+.+.|++++|...|++..+  | +...|..+-.+|...|++++|...|++..+.. +-+...|..+-.++.+
T Consensus        38 ~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~-P~~~~~~~~lg~~~~~  116 (151)
T 3gyz_A           38 DIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG-KNDYTPVFHTGQCQLR  116 (151)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SSCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHH
Confidence            344444444444444444444444331  2 34444444444444444444444444444432 1123444444444444


Q ss_pred             ccchhhHHHHHHHHHHh
Q 036068           85 LRALDLGEWIKTYIDKN  101 (178)
Q Consensus        85 ~~~~~~a~~~~~~m~~~  101 (178)
                      .|++++|...|+...+.
T Consensus       117 lg~~~eA~~~~~~al~l  133 (151)
T 3gyz_A          117 LKAPLKAKECFELVIQH  133 (151)
T ss_dssp             TTCHHHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHh
Confidence            44444444444444443

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=98.66  E-value=2.1e-06  Score=72.45  Aligned_cols=141  Identities=12%  Similarity=0.106  Sum_probs=99.6

Q ss_pred             chhHHHHHHHHHHhcCChhHHHHHhccCCCCChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHHhcc
Q 036068            5 DVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARAN   84 (178)
Q Consensus         5 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~   84 (178)
                      +..+|..+-.++.+.|++++|.+-|.+-  .|...|..++.++.+.|++++|.+.|..-.+..  ++....+.+..+|++
T Consensus      1104 ~p~vWsqLAKAql~~G~~kEAIdsYiKA--dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAK 1179 (1630)
T 1xi4_A         1104 EPAVWSQLAKAQLQKGMVKEAIDSYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAK 1179 (1630)
T ss_pred             CHHHHHHHHHHHHhCCCHHHHHHHHHhc--CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHh
Confidence            3567888888888888888888888664  577778888888888888888888887755543  232233347777777


Q ss_pred             ccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHhcCChhhhc---cchhhHHHHHHHHHhcCChhHHHHHHHHH
Q 036068           85 LRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ---KDKFSWTTMIVGLAISGNGDKALDMFSQM  156 (178)
Q Consensus        85 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m  156 (178)
                      .+++++.+.+.    +   .++...|..+-..+...|+++.|.   .....|..+...+++.|++++|.+.+++.
T Consensus      1180 l~rleele~fI----~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA~ny~rLA~tLvkLge~q~AIEaarKA 1247 (1630)
T 1xi4_A         1180 TNRLAELEEFI----N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKA 1247 (1630)
T ss_pred             hcCHHHHHHHH----h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhhhHHHHHHHHHHHhCCHHHHHHHHHHh
Confidence            77776544442    1   234445556677777777777776   34567777788888888888888777765

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=98.66  E-value=7.3e-07  Score=65.77  Aligned_cols=153  Identities=12%  Similarity=-0.047  Sum_probs=117.4

Q ss_pred             hhHHHHHHHHHHhcCChhHHHHHhccCCC-----C----ChhHHHHHHHHHhhcCChhHHHHHHHHhHhC----CCCCcH
Q 036068            6 VISWTAIVSRYINRGQVDIARQCFDQMPE-----R----DYVLWTAMIDGYLRVNRFREALTLFQEMQTS----NIMGDE   72 (178)
Q Consensus         6 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~-----~----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----~~~~~~   72 (178)
                      ..+++.+-..+...|++++|.+.|++..+     +    ...+++.+-..|...|++++|.+.|++..+.    +.+...
T Consensus       182 ~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~  261 (378)
T 3q15_A          182 IQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLP  261 (378)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHH
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHH
Confidence            45788899999999999999999887643     1    2346778888999999999999999997661    223346


Q ss_pred             HHHHHHHHHhccccchhhHHHHHHHHHHhCc----ccchHHHHHHHHHHHhcCC---hhhhc----------cchhhHHH
Q 036068           73 FTIVSILTARANLRALDLGEWIKTYIDKNKV----KNDIFAGNALIDMYCICAD---VEKAQ----------KDKFSWTT  135 (178)
Q Consensus        73 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~----~~~~~~~~~ll~~~~~~~~---~~~a~----------~~~~~~~~  135 (178)
                      .++..+..++.+.|++++|...++...+...    +.....+..+-..|...++   ..+|.          .....+..
T Consensus       262 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~  341 (378)
T 3q15_A          262 KVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKNLHAYIEACARS  341 (378)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCCChhHHHHHHHH
Confidence            7888899999999999999999998876432    2234455666666667777   55554          12345667


Q ss_pred             HHHHHHhcCChhHHHHHHHHHHH
Q 036068          136 MIVGLAISGNGDKALDMFSQMLR  158 (178)
Q Consensus       136 li~~~~~~~~~~~a~~~~~~m~~  158 (178)
                      +...|...|++++|.+.|++..+
T Consensus       342 la~~y~~~g~~~~A~~~~~~al~  364 (378)
T 3q15_A          342 AAAVFESSCHFEQAAAFYRKVLK  364 (378)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHH
Confidence            88999999999999999998865

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=98.66  E-value=1e-06  Score=57.01  Aligned_cols=127  Identities=11%  Similarity=-0.029  Sum_probs=91.4

Q ss_pred             HHHHHHHHHhcCChhHHHHHhccCCCCChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHHhccccch
Q 036068            9 WTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANLRAL   88 (178)
Q Consensus         9 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~   88 (178)
                      +..+.+.+...+.+.++.++    ...+...+..+-..+.+.|++++|...|++..... +-+...|..+-.++.+.|++
T Consensus        12 ~~~l~~~~~~~~~l~~al~l----~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~   86 (151)
T 3gyz_A           12 STAVIDAINSGATLKDINAI----PDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQF   86 (151)
T ss_dssp             HHHHHHHHHTSCCTGGGCCS----CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHHCCCCHHHHhCC----CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccH
Confidence            34444554444444333221    11256677778888899999999999999988875 34677888888999999999


Q ss_pred             hhHHHHHHHHHHhCcccchHHHHHHHHHHHhcCChhhhccchhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChh
Q 036068           89 DLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEV  166 (178)
Q Consensus        89 ~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~  166 (178)
                      ++|...|+...+..+.                        +...|..+-..|.+.|++++|...|++.++.  .|+..
T Consensus        87 ~~Ai~~~~~al~l~P~------------------------~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l--~~~~~  138 (151)
T 3gyz_A           87 QQAADLYAVAFALGKN------------------------DYTPVFHTGQCQLRLKAPLKAKECFELVIQH--SNDEK  138 (151)
T ss_dssp             HHHHHHHHHHHHHSSS------------------------CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHH
T ss_pred             HHHHHHHHHHHhhCCC------------------------CcHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCHH
Confidence            9999999998887643                        3445667777778888888888888888875  35543

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=98.64  E-value=4.3e-07  Score=64.84  Aligned_cols=152  Identities=8%  Similarity=-0.073  Sum_probs=113.5

Q ss_pred             hhHHHHHHHHHHhcCChhHHHHHhccCCC-----CC----hhHHHHHHHHHhhc-CChhHHHHHHHHhHhCC----CCCc
Q 036068            6 VISWTAIVSRYINRGQVDIARQCFDQMPE-----RD----YVLWTAMIDGYLRV-NRFREALTLFQEMQTSN----IMGD   71 (178)
Q Consensus         6 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~-----~~----~~~~~~li~~~~~~-~~~~~a~~~~~~m~~~~----~~~~   71 (178)
                      ..+|+.+...|.+.|++++|...|++..+     .+    ..+++.+-..|... |++++|...|++..+..    -.+.
T Consensus        77 a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~  156 (292)
T 1qqe_A           77 GNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVAL  156 (292)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHH
Confidence            46789999999999999999998887653     11    45788888999996 99999999999976531    1111


Q ss_pred             -HHHHHHHHHHhccccchhhHHHHHHHHHHhCcccch------HHHHHHHHHHHhcCChhhhc----------cchh---
Q 036068           72 -EFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDI------FAGNALIDMYCICADVEKAQ----------KDKF---  131 (178)
Q Consensus        72 -~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~------~~~~~ll~~~~~~~~~~~a~----------~~~~---  131 (178)
                       ..++..+...+.+.|++++|...++...+.......      ..+..+...|...|++++|.          |+..   
T Consensus       157 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~  236 (292)
T 1qqe_A          157 SNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSR  236 (292)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC--------
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcH
Confidence             357888899999999999999999999886644322      25677788899999999987          2211   


Q ss_pred             ---hHHHHHHHHH--hcCChhHHHHHHHHHH
Q 036068          132 ---SWTTMIVGLA--ISGNGDKALDMFSQML  157 (178)
Q Consensus       132 ---~~~~li~~~~--~~~~~~~a~~~~~~m~  157 (178)
                         .+..++..+.  ..+++++|+..|+++.
T Consensus       237 ~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~  267 (292)
T 1qqe_A          237 ESNFLKSLIDAVNEGDSEQLSEHCKEFDNFM  267 (292)
T ss_dssp             -HHHHHHHHHHHHTTCTTTHHHHHHHHTTSS
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHhccCC
Confidence               2344555554  4567888888887654

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=98.63  E-value=2.5e-07  Score=68.62  Aligned_cols=152  Identities=13%  Similarity=0.041  Sum_probs=102.6

Q ss_pred             hHHHHHHHHHHhcCChhHHHHHhccCCC---------CChhHHHHHHHHHhhcCChhHHHHHHHHhHhC----C-CCCcH
Q 036068            7 ISWTAIVSRYINRGQVDIARQCFDQMPE---------RDYVLWTAMIDGYLRVNRFREALTLFQEMQTS----N-IMGDE   72 (178)
Q Consensus         7 ~~~~~li~~~~~~~~~~~a~~~~~~m~~---------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----~-~~~~~   72 (178)
                      ..|..+...+...|++++|.+.+++..+         .....+..+-..|...|++++|...+++..+.    + .....
T Consensus        87 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  166 (411)
T 4a1s_A           87 AIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEG  166 (411)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHH
Confidence            4677788888888888888888776542         14456777777888888888888888776543    1 11224


Q ss_pred             HHHHHHHHHhccccc-----------------hhhHHHHHHHHHHh----Cc-ccchHHHHHHHHHHHhcCChhhhc---
Q 036068           73 FTIVSILTARANLRA-----------------LDLGEWIKTYIDKN----KV-KNDIFAGNALIDMYCICADVEKAQ---  127 (178)
Q Consensus        73 ~~~~~ll~~~~~~~~-----------------~~~a~~~~~~m~~~----~~-~~~~~~~~~ll~~~~~~~~~~~a~---  127 (178)
                      .++..+...+...|+                 +++|.+.++...+.    +. .....++..+-..|...|++++|.   
T Consensus       167 ~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~  246 (411)
T 4a1s_A          167 RALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHH  246 (411)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHH
Confidence            466677777777888                 77777777665432    11 122346667777778888887776   


Q ss_pred             -------c---c----hhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 036068          128 -------K---D----KFSWTTMIVGLAISGNGDKALDMFSQMLR  158 (178)
Q Consensus       128 -------~---~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~  158 (178)
                             +   +    ...+..+...+...|++++|.+.+++..+
T Consensus       247 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  291 (411)
T 4a1s_A          247 QERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLA  291 (411)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence                   1   1    22666777777777777777777777664

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=98.63  E-value=1.7e-06  Score=55.70  Aligned_cols=129  Identities=12%  Similarity=-0.034  Sum_probs=93.5

Q ss_pred             hhHHHHHHHHHHhcCChhHHHHHhccCCC---CChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHHh
Q 036068            6 VISWTAIVSRYINRGQVDIARQCFDQMPE---RDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTAR   82 (178)
Q Consensus         6 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~   82 (178)
                      ...|..+...+...|++++|...|++..+   .+...+..+...+...|++++|...+++..+.. +.+...+..+..++
T Consensus        13 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~   91 (166)
T 1a17_A           13 AEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASN   91 (166)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHH
Confidence            44577788888889999999998887642   367778888888888999999999998887764 33567788888888


Q ss_pred             ccccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHhcCChhhhccchhhHHHHHHHHHhcCChhHHHHHHHHHH
Q 036068           83 ANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQKDKFSWTTMIVGLAISGNGDKALDMFSQML  157 (178)
Q Consensus        83 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~  157 (178)
                      .+.|++++|...++...+.... +...+..                     -.....+.+.|++++|.+.+.+..
T Consensus        92 ~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~---------------------~~~~~~~~~~~~~~~A~~~~~~~~  144 (166)
T 1a17_A           92 MALGKFRAALRDYETVVKVKPH-DKDAKMK---------------------YQECNKIVKQKAFERAIAGDEHKR  144 (166)
T ss_dssp             HHTTCHHHHHHHHHHHHHHSTT-CHHHHHH---------------------HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHhccHHHHHHHHHHHHHhCCC-CHHHHHH---------------------HHHHHHHHHHHHHHHHHHcccchH
Confidence            8899999999999888876533 2222211                     122233455677778888777654

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=98.63  E-value=6.1e-07  Score=56.07  Aligned_cols=106  Identities=8%  Similarity=0.036  Sum_probs=86.8

Q ss_pred             hhHHHHHHHHHHhcCChhHHHHHhccCCC---CChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHHh
Q 036068            6 VISWTAIVSRYINRGQVDIARQCFDQMPE---RDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTAR   82 (178)
Q Consensus         6 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~   82 (178)
                      ...|...-..+.+.|++++|.+.|++..+   .+...|..+-.+|.+.|++++|.+.|++..+.. +.+...|..+-.++
T Consensus        13 a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~   91 (126)
T 4gco_A           13 AQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYIRKAACL   91 (126)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHHHHHHHH
Confidence            45677888899999999999999998653   478889999999999999999999999988765 34577888999999


Q ss_pred             ccccchhhHHHHHHHHHHhCcccchHHHHHH
Q 036068           83 ANLRALDLGEWIKTYIDKNKVKNDIFAGNAL  113 (178)
Q Consensus        83 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l  113 (178)
                      .+.|++++|.+.|+...+..+. +...+..+
T Consensus        92 ~~~~~~~~A~~~~~~al~l~P~-~~~a~~~l  121 (126)
T 4gco_A           92 VAMREWSKAQRAYEDALQVDPS-NEEAREGV  121 (126)
T ss_dssp             HHTTCHHHHHHHHHHHHHHCTT-CHHHHHHH
T ss_pred             HHCCCHHHHHHHHHHHHHHCcC-CHHHHHHH
Confidence            9999999999999999887543 34444433

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=98.63  E-value=6.5e-07  Score=64.39  Aligned_cols=149  Identities=8%  Similarity=-0.030  Sum_probs=115.1

Q ss_pred             HHHHHHHHHHhcCChhHHHHHhccCCC-------C--ChhHHHHHHHHHhhcCChhHHHHHHHHhHhC----CCCC-cHH
Q 036068            8 SWTAIVSRYINRGQVDIARQCFDQMPE-------R--DYVLWTAMIDGYLRVNRFREALTLFQEMQTS----NIMG-DEF   73 (178)
Q Consensus         8 ~~~~li~~~~~~~~~~~a~~~~~~m~~-------~--~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----~~~~-~~~   73 (178)
                      .|......|...|++++|.+.|.+..+       +  -..+|+.+...|.+.|++++|...|++..+.    |-.. -..
T Consensus        38 ~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~  117 (307)
T 2ifu_A           38 EYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAM  117 (307)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence            577788889999999999988887642       1  2457888889999999999999999986442    2111 246


Q ss_pred             HHHHHHHHhccccchhhHHHHHHHHHHhCccc-----chHHHHHHHHHHHhcCChhhhc----------cc-------hh
Q 036068           74 TIVSILTARANLRALDLGEWIKTYIDKNKVKN-----DIFAGNALIDMYCICADVEKAQ----------KD-------KF  131 (178)
Q Consensus        74 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~-----~~~~~~~ll~~~~~~~~~~~a~----------~~-------~~  131 (178)
                      ++..+-.+|.+ |++++|...++...+.....     ...+++.+-..|.+.|++++|.          ++       ..
T Consensus       118 ~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~  196 (307)
T 2ifu_A          118 ALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYK  196 (307)
T ss_dssp             HHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHH
Confidence            77888888988 99999999998776542211     2567888899999999999997          11       22


Q ss_pred             hHHHHHHHHHhcCChhHHHHHHHHHH
Q 036068          132 SWTTMIVGLAISGNGDKALDMFSQML  157 (178)
Q Consensus       132 ~~~~li~~~~~~~~~~~a~~~~~~m~  157 (178)
                      .+..+...+...|++++|...|++.+
T Consensus       197 ~~~~~g~~~~~~g~~~~A~~~~~~al  222 (307)
T 2ifu_A          197 KCIAQVLVQLHRADYVAAQKCVRESY  222 (307)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence            56666677778899999999999988

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=98.62  E-value=2.5e-06  Score=58.02  Aligned_cols=156  Identities=12%  Similarity=0.046  Sum_probs=122.7

Q ss_pred             cchhHHHHHHHHHHhcCChhHHHHHhccCCCC-ChhHHHHHHHHHhhcC----ChhHHHHHHHHhHhCCCCCcHHHHHHH
Q 036068            4 KDVISWTAIVSRYINRGQVDIARQCFDQMPER-DYVLWTAMIDGYLRVN----RFREALTLFQEMQTSNIMGDEFTIVSI   78 (178)
Q Consensus         4 p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-~~~~~~~li~~~~~~~----~~~~a~~~~~~m~~~~~~~~~~~~~~l   78 (178)
                      -++..+..+-..+...+++++|...|++.-+. +...+..|-..|.. +    +.++|.+.|++..+.|   +...+..+
T Consensus        16 g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~g---~~~a~~~L   91 (212)
T 3rjv_A           16 GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQGDGDALALLAQLKIR-NPQQADYPQARQLAEKAVEAG---SKSGEIVL   91 (212)
T ss_dssp             TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred             CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHCC---CHHHHHHH
Confidence            35667788888999999999999999987654 67777777778877 6    8999999999998876   55677777


Q ss_pred             HHHhcc----ccchhhHHHHHHHHHHhCcc-cchHHHHHHHHHHHh----cCChhhhc----------cchhhHHHHHHH
Q 036068           79 LTARAN----LRALDLGEWIKTYIDKNKVK-NDIFAGNALIDMYCI----CADVEKAQ----------KDKFSWTTMIVG  139 (178)
Q Consensus        79 l~~~~~----~~~~~~a~~~~~~m~~~~~~-~~~~~~~~ll~~~~~----~~~~~~a~----------~~~~~~~~li~~  139 (178)
                      -..|..    .+++++|.++++...+.|.. ..+..+..|-..|..    .++.++|.          .+...+..|-..
T Consensus        92 g~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~a~~~Lg~~  171 (212)
T 3rjv_A           92 ARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSLSRTGYAEYWAGMM  171 (212)
T ss_dssp             HHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHTSCTTHHHHHHHHH
T ss_pred             HHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence            777876    78999999999999887753 136677777777877    67777776          356677777777


Q ss_pred             HHhc-C-----ChhHHHHHHHHHHHcCCCC
Q 036068          140 LAIS-G-----NGDKALDMFSQMLRASIKP  163 (178)
Q Consensus       140 ~~~~-~-----~~~~a~~~~~~m~~~g~~p  163 (178)
                      |... |     +.++|...|++..+.|...
T Consensus       172 y~~g~gg~~~~d~~~A~~~~~~A~~~g~~~  201 (212)
T 3rjv_A          172 FQQGEKGFIEPNKQKALHWLNVSCLEGFDT  201 (212)
T ss_dssp             HHHCBTTTBCCCHHHHHHHHHHHHHHTCHH
T ss_pred             HHcCCCCCCCCCHHHHHHHHHHHHHcCCHH
Confidence            7654 3     8999999999998887533

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=98.62  E-value=4.7e-07  Score=58.28  Aligned_cols=115  Identities=10%  Similarity=-0.069  Sum_probs=93.1

Q ss_pred             hhHHHHHHHHHHhcCChhHHHHHhccCCC---CChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHHh
Q 036068            6 VISWTAIVSRYINRGQVDIARQCFDQMPE---RDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTAR   82 (178)
Q Consensus         6 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~   82 (178)
                      ...+-.+-..|.+.|++++|.+.|++..+   .+...|..+-..|.+.|++++|...|++..+.. +-+...+..+...+
T Consensus        31 ~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~  109 (150)
T 4ga2_A           31 SIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENTDKAVECYRRSVELN-PTQKDLVLKIAELL  109 (150)
T ss_dssp             HTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence            44566788999999999999999998753   478899999999999999999999999998864 23577888999999


Q ss_pred             ccccchhhHHHH-HHHHHHhCcccchHHHHHHHHHHHhcCC
Q 036068           83 ANLRALDLGEWI-KTYIDKNKVKNDIFAGNALIDMYCICAD  122 (178)
Q Consensus        83 ~~~~~~~~a~~~-~~~m~~~~~~~~~~~~~~ll~~~~~~~~  122 (178)
                      .+.|+++++.+. ++...+..+ -++.+|...-..+.+.|+
T Consensus       110 ~~~~~~~~aa~~~~~~al~l~P-~~~~~~~l~~~ll~~~G~  149 (150)
T 4ga2_A          110 CKNDVTDGRAKYWVERAAKLFP-GSPAVYKLKEQLLDCEGE  149 (150)
T ss_dssp             HHHCSSSSHHHHHHHHHHHHST-TCHHHHHHHHHHHHTCCC
T ss_pred             HHcCChHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHhCc
Confidence            999999876655 577777654 357777777777766664

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=98.62  E-value=2.8e-07  Score=65.80  Aligned_cols=154  Identities=13%  Similarity=0.082  Sum_probs=120.1

Q ss_pred             hhHHHHHHHHHHhcCC--------------------hhHHHHHhccCCC-----C----ChhHHHHHHHHHhhcCChhHH
Q 036068            6 VISWTAIVSRYINRGQ--------------------VDIARQCFDQMPE-----R----DYVLWTAMIDGYLRVNRFREA   56 (178)
Q Consensus         6 ~~~~~~li~~~~~~~~--------------------~~~a~~~~~~m~~-----~----~~~~~~~li~~~~~~~~~~~a   56 (178)
                      ..++..+...+...|+                    +++|.+.+++..+     +    ....+..+...+...|++++|
T Consensus       123 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A  202 (338)
T 3ro2_A          123 ARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDA  202 (338)
T ss_dssp             HHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred             HHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHH
Confidence            3478888899999999                    8999888877542     1    344788888899999999999


Q ss_pred             HHHHHHhHhC----CC-CCcHHHHHHHHHHhccccchhhHHHHHHHHHHhCcc-----cchHHHHHHHHHHHhcCChhhh
Q 036068           57 LTLFQEMQTS----NI-MGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVK-----NDIFAGNALIDMYCICADVEKA  126 (178)
Q Consensus        57 ~~~~~~m~~~----~~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~-----~~~~~~~~ll~~~~~~~~~~~a  126 (178)
                      .+.+++..+.    +. .....++..+...+...|++++|...++...+....     ....++..+...|...|++++|
T Consensus       203 ~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A  282 (338)
T 3ro2_A          203 VIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKA  282 (338)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHH
Confidence            9999987543    11 112347788888999999999999999877653211     1256778888899999999999


Q ss_pred             c-------------c----chhhHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 036068          127 Q-------------K----DKFSWTTMIVGLAISGNGDKALDMFSQMLRA  159 (178)
Q Consensus       127 ~-------------~----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~  159 (178)
                      .             .    ...++..+...+.+.|++++|.+.+++..+.
T Consensus       283 ~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~  332 (338)
T 3ro2_A          283 IDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI  332 (338)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence            7             1    1447778889999999999999999998864

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=98.61  E-value=3.3e-07  Score=73.04  Aligned_cols=139  Identities=16%  Similarity=0.019  Sum_probs=114.7

Q ss_pred             cchhHHHHHHHHHHhcCChhHHHHHhccCCC---CChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHH
Q 036068            4 KDVISWTAIVSRYINRGQVDIARQCFDQMPE---RDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILT   80 (178)
Q Consensus         4 p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~   80 (178)
                      .+...|..+...+.+.|++++|.+.|++..+   .+...|..+-..|.+.|++++|.+.|++..+.. +-+...+..+-.
T Consensus       431 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~~~~~lg~  509 (681)
T 2pzi_A          431 ESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLTGDYDSATKHFTEVLDTF-PGELAPKLALAA  509 (681)
T ss_dssp             TCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCSHHHHHHHH
T ss_pred             cchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHH
Confidence            4566788899999999999999999998764   377889999999999999999999999988865 235678889999


Q ss_pred             HhccccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHhcCChhhhc----------c-chhhHHHHHHHHHhcCC
Q 036068           81 ARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ----------K-DKFSWTTMIVGLAISGN  145 (178)
Q Consensus        81 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~----------~-~~~~~~~li~~~~~~~~  145 (178)
                      ++.+.|++++ .+.|+...+.... +...|..+-..|.+.|++++|.          | +...|..+...+...++
T Consensus       510 ~~~~~g~~~~-~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~~~~~~~~  583 (681)
T 2pzi_A          510 TAELAGNTDE-HKFYQTVWSTNDG-VISAAFGLARARSAEGDRVGAVRTLDEVPPTSRHFTTARLTSAVTLLSGRS  583 (681)
T ss_dssp             HHHHHTCCCT-TCHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHTSCTTSTTHHHHHHHHHHHTC----
T ss_pred             HHHHcCChHH-HHHHHHHHHhCCc-hHHHHHHHHHHHHHcCCHHHHHHHHHhhcccCcccHHHHHHHHHHHHccCC
Confidence            9999999999 9999999987643 5778999999999999999997          3 35666667777666554

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=98.61  E-value=3.6e-06  Score=52.48  Aligned_cols=106  Identities=9%  Similarity=-0.008  Sum_probs=83.6

Q ss_pred             hhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHHhccccchhhHHHHHHHHHHhCcccchHHHHHHHHH
Q 036068           37 YVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDM  116 (178)
Q Consensus        37 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~  116 (178)
                      ...+...-..|.+.|++++|.+.|++..+.. +.+...|..+-.++.+.|++++|...++...+....            
T Consensus        13 a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~------------   79 (126)
T 4gco_A           13 AQEEKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSK------------   79 (126)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------------
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhh------------
Confidence            3456677788899999999999999987764 346788888889999999999999999888876432            


Q ss_pred             HHhcCChhhhccchhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhHHH
Q 036068          117 YCICADVEKAQKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYV  169 (178)
Q Consensus       117 ~~~~~~~~~a~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~  169 (178)
                                  +...|..+...+...|++++|.+.|++.++.  .|+.....
T Consensus        80 ------------~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l--~P~~~~a~  118 (126)
T 4gco_A           80 ------------FIKGYIRKAACLVAMREWSKAQRAYEDALQV--DPSNEEAR  118 (126)
T ss_dssp             ------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHH
T ss_pred             ------------hhHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--CcCCHHHH
Confidence                        3445777788888899999999999998874  57654443

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=98.61  E-value=1.4e-06  Score=64.26  Aligned_cols=148  Identities=9%  Similarity=-0.119  Sum_probs=114.3

Q ss_pred             HHHHHHhcCChhHHHHHhccCCC-----C----ChhHHHHHHHHHhhcCChhHHHHHHHHhHhC----C--CCCcHHHHH
Q 036068           12 IVSRYINRGQVDIARQCFDQMPE-----R----DYVLWTAMIDGYLRVNRFREALTLFQEMQTS----N--IMGDEFTIV   76 (178)
Q Consensus        12 li~~~~~~~~~~~a~~~~~~m~~-----~----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----~--~~~~~~~~~   76 (178)
                      .-..+...|++++|.+.|++..+     +    ...++..+-..|...|++++|...+++..+.    +  ......++.
T Consensus       109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  188 (383)
T 3ulq_A          109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS  188 (383)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred             HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence            45567789999999999987643     2    3457888889999999999999999886542    1  111245788


Q ss_pred             HHHHHhccccchhhHHHHHHHHHHhCc-----ccchHHHHHHHHHHHhcCChhhhc-------------c----chhhHH
Q 036068           77 SILTARANLRALDLGEWIKTYIDKNKV-----KNDIFAGNALIDMYCICADVEKAQ-------------K----DKFSWT  134 (178)
Q Consensus        77 ~ll~~~~~~~~~~~a~~~~~~m~~~~~-----~~~~~~~~~ll~~~~~~~~~~~a~-------------~----~~~~~~  134 (178)
                      .+-.+|...|++++|...++...+...     .....++..+-..|...|++++|.             .    ...++.
T Consensus       189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  268 (383)
T 3ulq_A          189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF  268 (383)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred             HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence            888899999999999999987765421     112357888889999999999987             1    234577


Q ss_pred             HHHHHHHhcCChhHHHHHHHHHHHc
Q 036068          135 TMIVGLAISGNGDKALDMFSQMLRA  159 (178)
Q Consensus       135 ~li~~~~~~~~~~~a~~~~~~m~~~  159 (178)
                      .+...+.+.|++++|.+.+++..+.
T Consensus       269 ~l~~~~~~~g~~~~A~~~~~~al~~  293 (383)
T 3ulq_A          269 LITQIHYKLGKIDKAHEYHSKGMAY  293 (383)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHH
Confidence            8889999999999999999988753

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=98.61  E-value=2.8e-07  Score=65.79  Aligned_cols=28  Identities=11%  Similarity=0.198  Sum_probs=15.9

Q ss_pred             hHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 036068          132 SWTTMIVGLAISGNGDKALDMFSQMLRA  159 (178)
Q Consensus       132 ~~~~li~~~~~~~~~~~a~~~~~~m~~~  159 (178)
                      ++..+...+...|++++|.+.+++..+.
T Consensus       225 ~~~~l~~~~~~~g~~~~A~~~~~~al~~  252 (338)
T 3ro2_A          225 AYSNLGNAYIFLGEFETASEYYKKTLLL  252 (338)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            4555555555556666666666555554

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=98.60  E-value=2.3e-06  Score=72.30  Aligned_cols=139  Identities=13%  Similarity=0.089  Sum_probs=92.4

Q ss_pred             cchhHHHHHHHHHHhcCChhHHHHHhccCCC--CChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHH
Q 036068            4 KDVISWTAIVSRYINRGQVDIARQCFDQMPE--RDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTA   81 (178)
Q Consensus         4 p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~   81 (178)
                      -|...|..++.++.+.|++++|.+.+...++  ++....+.+..+|++.+++++...+.    .   .++...|..+-..
T Consensus      1132 dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~Idt~LafaYAKl~rleele~fI----~---~~n~ad~~~iGd~ 1204 (1630)
T 1xi4_A         1132 DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTNRLAELEEFI----N---GPNNAHIQQVGDR 1204 (1630)
T ss_pred             CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccccccHHHHHHHHhhcCHHHHHHHH----h---CCCHHHHHHHHHH
Confidence            4566788899999999999999999965442  23333334777777777766433332    1   2344555566666


Q ss_pred             hccccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHhcCChhhhc------c---------------------------
Q 036068           82 RANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ------K---------------------------  128 (178)
Q Consensus        82 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~------~---------------------------  128 (178)
                      |...|++++|..+|+..         ..|..+...|++.|+++.|.      .                           
T Consensus      1205 le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA~n~~aWkev~~acve~~Ef~LA~~cgl~ 1275 (1630)
T 1xi4_A         1205 CYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLH 1275 (1630)
T ss_pred             HHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHhCCHHHHHHHHHHHhhhhHHHHHHHHHHh
Confidence            77777777777776653         35666666666666666665      2                           


Q ss_pred             ---chhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 036068          129 ---DKFSWTTMIVGLAISGNGDKALDMFSQMLR  158 (178)
Q Consensus       129 ---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~  158 (178)
                         +...+..++..|.+.|.+++|..+++.-+.
T Consensus      1276 Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~ 1308 (1630)
T 1xi4_A         1276 IVVHADELEELINYYQDRGYFEELITMLEAALG 1308 (1630)
T ss_pred             hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence               333455777788888999999999977654

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=98.59  E-value=3.9e-07  Score=67.12  Aligned_cols=95  Identities=11%  Similarity=0.062  Sum_probs=44.3

Q ss_pred             chhHHHHHHHHHHhcCChhHHHHHhccCCC--C-C----hhHHHHHHHHHhhcCChhHHHHHHHHhHhC----CCCC-cH
Q 036068            5 DVISWTAIVSRYINRGQVDIARQCFDQMPE--R-D----YVLWTAMIDGYLRVNRFREALTLFQEMQTS----NIMG-DE   72 (178)
Q Consensus         5 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~--~-~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----~~~~-~~   72 (178)
                      ....+...-..+.+.|++++|...|++..+  | +    ...|..+...|...|++++|...+++....    +-.| ..
T Consensus         8 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~   87 (406)
T 3sf4_A            8 SCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEA   87 (406)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHH
Confidence            333444455555555555555555554431  1 1    234444555555555555555555543221    1111 12


Q ss_pred             HHHHHHHHHhccccchhhHHHHHHHHH
Q 036068           73 FTIVSILTARANLRALDLGEWIKTYID   99 (178)
Q Consensus        73 ~~~~~ll~~~~~~~~~~~a~~~~~~m~   99 (178)
                      .++..+...+...|++++|...++...
T Consensus        88 ~~~~~la~~~~~~g~~~~A~~~~~~al  114 (406)
T 3sf4_A           88 KASGNLGNTLKVLGNFDEAIVCCQRHL  114 (406)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            344444445555555555555554443

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=98.59  E-value=5.6e-07  Score=66.26  Aligned_cols=151  Identities=13%  Similarity=0.051  Sum_probs=73.0

Q ss_pred             HHHHHHHHHHhcCChhHHHHHhccCCC-----CC----hhHHHHHHHHHhhcCC--------------------hhHHHH
Q 036068            8 SWTAIVSRYINRGQVDIARQCFDQMPE-----RD----YVLWTAMIDGYLRVNR--------------------FREALT   58 (178)
Q Consensus         8 ~~~~li~~~~~~~~~~~a~~~~~~m~~-----~~----~~~~~~li~~~~~~~~--------------------~~~a~~   58 (178)
                      +|..+...+...|++++|...+++..+     ++    ..++..+-..|...|+                    +++|.+
T Consensus        89 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~  168 (406)
T 3sf4_A           89 ASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVD  168 (406)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHH
Confidence            344455555555555555555544332     11    2244455555555555                    555555


Q ss_pred             HHHHhHhC----CCCC-cHHHHHHHHHHhccccchhhHHHHHHHHHHhCcc-----cchHHHHHHHHHHHhcCChhhhc-
Q 036068           59 LFQEMQTS----NIMG-DEFTIVSILTARANLRALDLGEWIKTYIDKNKVK-----NDIFAGNALIDMYCICADVEKAQ-  127 (178)
Q Consensus        59 ~~~~m~~~----~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~-----~~~~~~~~ll~~~~~~~~~~~a~-  127 (178)
                      .+++..+.    +-.| ...++..+...+...|++++|...++...+....     ....++..+...|...|++++|. 
T Consensus       169 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~  248 (406)
T 3sf4_A          169 FYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASE  248 (406)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHH
Confidence            55543221    1111 1234445555555556666666555554432110     01224555555555666666554 


Q ss_pred             ---------c-------chhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 036068          128 ---------K-------DKFSWTTMIVGLAISGNGDKALDMFSQMLR  158 (178)
Q Consensus       128 ---------~-------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~  158 (178)
                               +       ...++..+...+...|++++|.+.+++..+
T Consensus       249 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~  295 (406)
T 3sf4_A          249 YYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLA  295 (406)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence                     0       134455555556666666666666655543

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=98.56  E-value=3.3e-06  Score=62.24  Aligned_cols=148  Identities=8%  Similarity=-0.045  Sum_probs=115.4

Q ss_pred             HHHHHHhcCChhHHHHHhccCCC-----C----ChhHHHHHHHHHhhcCChhHHHHHHHHhHhC----CC-CC-cHHHHH
Q 036068           12 IVSRYINRGQVDIARQCFDQMPE-----R----DYVLWTAMIDGYLRVNRFREALTLFQEMQTS----NI-MG-DEFTIV   76 (178)
Q Consensus        12 li~~~~~~~~~~~a~~~~~~m~~-----~----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----~~-~~-~~~~~~   76 (178)
                      .-..+...|++++|...|++..+     +    ....+..+-..|...|++++|...+++..+.    +- .+ ...+++
T Consensus       107 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  186 (378)
T 3q15_A          107 RGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLF  186 (378)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHH
T ss_pred             HHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHH
Confidence            34456789999999999987643     2    3457888888999999999999999886542    11 11 256788


Q ss_pred             HHHHHhccccchhhHHHHHHHHHHh----Ccc-cchHHHHHHHHHHHhcCChhhhc----------------cchhhHHH
Q 036068           77 SILTARANLRALDLGEWIKTYIDKN----KVK-NDIFAGNALIDMYCICADVEKAQ----------------KDKFSWTT  135 (178)
Q Consensus        77 ~ll~~~~~~~~~~~a~~~~~~m~~~----~~~-~~~~~~~~ll~~~~~~~~~~~a~----------------~~~~~~~~  135 (178)
                      .+-.+|...|++++|.+.++...+.    +.. ....++..+-..|...|++++|.                ....++..
T Consensus       187 ~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  266 (378)
T 3q15_A          187 VIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFG  266 (378)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHH
T ss_pred             HHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHH
Confidence            8889999999999999999877653    211 22457888888999999999997                13556778


Q ss_pred             HHHHHHhcCChhHHHHHHHHHHHc
Q 036068          136 MIVGLAISGNGDKALDMFSQMLRA  159 (178)
Q Consensus       136 li~~~~~~~~~~~a~~~~~~m~~~  159 (178)
                      +...+.+.|++++|.+.+++..+.
T Consensus       267 la~~~~~~g~~~~A~~~~~~al~~  290 (378)
T 3q15_A          267 LSWTLCKAGQTQKAFQFIEEGLDH  290 (378)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHH
Confidence            889999999999999999999874

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=98.56  E-value=1.2e-06  Score=56.52  Aligned_cols=89  Identities=8%  Similarity=-0.055  Sum_probs=66.9

Q ss_pred             hhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHHhccccchhhHHHHHHHHHHhCcccchHHHHHHHHH
Q 036068           37 YVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDM  116 (178)
Q Consensus        37 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~  116 (178)
                      ...+..+-..+...|++++|...|++..+.. +.+...+..+..++.+.|++++|...++...+... .+...+..+...
T Consensus        13 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~~a~~   90 (166)
T 1a17_A           13 AEELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDK-KYIKGYYRRAAS   90 (166)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-ccHHHHHHHHHH
Confidence            4456667777788888888888888877654 23567777777888888888888888888777653 356677777888


Q ss_pred             HHhcCChhhhc
Q 036068          117 YCICADVEKAQ  127 (178)
Q Consensus       117 ~~~~~~~~~a~  127 (178)
                      +.+.|++++|.
T Consensus        91 ~~~~~~~~~A~  101 (166)
T 1a17_A           91 NMALGKFRAAL  101 (166)
T ss_dssp             HHHTTCHHHHH
T ss_pred             HHHhccHHHHH
Confidence            88888888876

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=98.56  E-value=9.5e-07  Score=55.31  Aligned_cols=99  Identities=10%  Similarity=-0.015  Sum_probs=84.1

Q ss_pred             CcchhHHHHHHHHHHhcCChhHHHHHhccCCC---CChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHH
Q 036068            3 NKDVISWTAIVSRYINRGQVDIARQCFDQMPE---RDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSIL   79 (178)
Q Consensus         3 ~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll   79 (178)
                      +.+...|..+...+.+.|++++|...|++..+   .+...|..+...+...|++++|...+++..+.. +.+...+..+.
T Consensus         6 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~   84 (137)
T 3q49_B            6 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLG   84 (137)
T ss_dssp             CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred             cccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHHHHH
Confidence            46778889999999999999999999997643   367788889999999999999999999988765 33577888899


Q ss_pred             HHhccccchhhHHHHHHHHHHhC
Q 036068           80 TARANLRALDLGEWIKTYIDKNK  102 (178)
Q Consensus        80 ~~~~~~~~~~~a~~~~~~m~~~~  102 (178)
                      .++.+.|++++|...++...+..
T Consensus        85 ~~~~~~~~~~~A~~~~~~a~~~~  107 (137)
T 3q49_B           85 QCQLEMESYDEAIANLQRAYSLA  107 (137)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhhHHHHHHHHHHHHHHC
Confidence            99999999999999998887654

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.55  E-value=2.8e-06  Score=53.61  Aligned_cols=109  Identities=17%  Similarity=0.038  Sum_probs=84.5

Q ss_pred             CcchhHHHHHHHHHHhcCChhHHHHHhccCCC--CC----hhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHH
Q 036068            3 NKDVISWTAIVSRYINRGQVDIARQCFDQMPE--RD----YVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIV   76 (178)
Q Consensus         3 ~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~--~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~   76 (178)
                      +.+...+..+...+.+.|++++|.+.|++..+  |+    ...|..+...|...|++++|...+++..+.. +.+...+.
T Consensus        25 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~  103 (148)
T 2dba_A           25 ASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKALY  103 (148)
T ss_dssp             CCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHHHH
T ss_pred             hHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHHHH
Confidence            34667788888999999999999999987653  44    5678888888899999999999999887764 23567778


Q ss_pred             HHHHHhccccchhhHHHHHHHHHHhCcccchHHHHHH
Q 036068           77 SILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNAL  113 (178)
Q Consensus        77 ~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l  113 (178)
                      .+..++.+.|++++|...++...+.... +...+..+
T Consensus       104 ~~a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l  139 (148)
T 2dba_A          104 RRSQALEKLGRLDQAVLDLQRCVSLEPK-NKVFQEAL  139 (148)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHHCSS-CHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHcCCC-cHHHHHHH
Confidence            8888889999999999999888876532 34444433

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=98.55  E-value=1.1e-05  Score=60.92  Aligned_cols=154  Identities=12%  Similarity=0.019  Sum_probs=100.1

Q ss_pred             chhHHHHHHHHHHhcCChhHHHHHhccCCC------------CChhHHHHHHHHHhhcCChhHHHHHHHHhHhC-----C
Q 036068            5 DVISWTAIVSRYINRGQVDIARQCFDQMPE------------RDYVLWTAMIDGYLRVNRFREALTLFQEMQTS-----N   67 (178)
Q Consensus         5 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~------------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-----~   67 (178)
                      .+..||.+-..+...|++++|++.|++..+            ....+|+.+-..|...|++++|...+++..+.     +
T Consensus        50 ~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~  129 (472)
T 4g1t_A           50 KATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSS  129 (472)
T ss_dssp             CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccc
Confidence            345688888999999999999888876421            24567888888999999999999888876542     1


Q ss_pred             -CCC-cHHHHHHHHHHhc--cccchhhHHHHHHHHHHhCcccchHHHHHHHHH---HHhcCChhhhc-------------
Q 036068           68 -IMG-DEFTIVSILTARA--NLRALDLGEWIKTYIDKNKVKNDIFAGNALIDM---YCICADVEKAQ-------------  127 (178)
Q Consensus        68 -~~~-~~~~~~~ll~~~~--~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~---~~~~~~~~~a~-------------  127 (178)
                       ..+ ...++...-.++.  ..+++++|...|+...+..+. ++..+..+...   +...++.++|.             
T Consensus       130 ~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~-~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~  208 (472)
T 4g1t_A          130 PYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPK-NPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDN  208 (472)
T ss_dssp             SSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSC
T ss_pred             ccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcc
Confidence             011 2344544433433  345678888888877766532 33334333333   22334434332             


Q ss_pred             ------------------------------------cchhhHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 036068          128 ------------------------------------KDKFSWTTMIVGLAISGNGDKALDMFSQMLRA  159 (178)
Q Consensus       128 ------------------------------------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~  159 (178)
                                                          .+...+..+...|...|++++|.+.+++..+.
T Consensus       209 ~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~  276 (472)
T 4g1t_A          209 QYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEY  276 (472)
T ss_dssp             HHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHh
Confidence                                                24556677777788888888888888887764

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=98.54  E-value=8.5e-07  Score=58.25  Aligned_cols=117  Identities=8%  Similarity=0.083  Sum_probs=72.2

Q ss_pred             hcCChhHHHHHhccCC---CCChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHH-hccccch--hhH
Q 036068           18 NRGQVDIARQCFDQMP---ERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTA-RANLRAL--DLG   91 (178)
Q Consensus        18 ~~~~~~~a~~~~~~m~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~-~~~~~~~--~~a   91 (178)
                      ..|++++|...+++..   ..+...|..+-..|...|++++|...|++..+.. +.+...+..+..+ +.+.|++  ++|
T Consensus        22 ~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~~~A  100 (177)
T 2e2e_A           22 SQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMTAQT  100 (177)
T ss_dssp             -----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCCHHH
T ss_pred             hccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcchHHH
Confidence            4556666666665543   2355666667777777777777777777766543 2244555556666 5566666  777


Q ss_pred             HHHHHHHHHhCcccchHHHHHHHHHHHhcCChhhhccchhhHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 036068           92 EWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQKDKFSWTTMIVGLAISGNGDKALDMFSQMLRA  159 (178)
Q Consensus        92 ~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~  159 (178)
                      ...++...+..+.                        +...+..+...+...|++++|...|++..+.
T Consensus       101 ~~~~~~al~~~p~------------------------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  144 (177)
T 2e2e_A          101 RAMIDKALALDSN------------------------EITALMLLASDAFMQANYAQAIELWQKVMDL  144 (177)
T ss_dssp             HHHHHHHHHHCTT------------------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHhCCC------------------------cHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence            7777766665422                        2344566667777888888888888888764

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=98.54  E-value=2.5e-06  Score=51.43  Aligned_cols=108  Identities=13%  Similarity=0.073  Sum_probs=87.5

Q ss_pred             cchhHHHHHHHHHHhcCChhHHHHHhccCCC---CChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHH
Q 036068            4 KDVISWTAIVSRYINRGQVDIARQCFDQMPE---RDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILT   80 (178)
Q Consensus         4 p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~   80 (178)
                      +++..|..+...+...|++++|...|++..+   .+...+..+...+...|++++|...+++..+.. +.+...+..+..
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~   80 (118)
T 1elw_A            2 EQVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAA   80 (118)
T ss_dssp             CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHH
Confidence            3466788899999999999999999998753   377788888899999999999999999988764 335778888899


Q ss_pred             HhccccchhhHHHHHHHHHHhCcccchHHHHHH
Q 036068           81 ARANLRALDLGEWIKTYIDKNKVKNDIFAGNAL  113 (178)
Q Consensus        81 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l  113 (178)
                      ++.+.|++++|...++...+..+. +...+..+
T Consensus        81 ~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l  112 (118)
T 1elw_A           81 ALEFLNRFEEAKRTYEEGLKHEAN-NPQLKEGL  112 (118)
T ss_dssp             HHHHTTCHHHHHHHHHHHHTTCTT-CHHHHHHH
T ss_pred             HHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHH
Confidence            999999999999999998876543 34444433

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=98.53  E-value=1.7e-06  Score=55.59  Aligned_cols=97  Identities=7%  Similarity=-0.024  Sum_probs=67.7

Q ss_pred             chhHHHHHHHHHHhcCChhHHHHHhccCCC---CChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHH
Q 036068            5 DVISWTAIVSRYINRGQVDIARQCFDQMPE---RDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTA   81 (178)
Q Consensus         5 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~   81 (178)
                      +...+..+...+.+.|++++|...|++...   .+...|..+-.+|...|++++|.+.|++..+.. +-+...+..+-.+
T Consensus        20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~   98 (148)
T 2vgx_A           20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD-IXEPRFPFHAAEC   98 (148)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHH
Confidence            445566677777777888887777776542   366667777777777777888877777776654 2245666677777


Q ss_pred             hccccchhhHHHHHHHHHHhC
Q 036068           82 RANLRALDLGEWIKTYIDKNK  102 (178)
Q Consensus        82 ~~~~~~~~~a~~~~~~m~~~~  102 (178)
                      +...|++++|...|+...+..
T Consensus        99 ~~~~g~~~~A~~~~~~al~~~  119 (148)
T 2vgx_A           99 LLQXGELAEAESGLFLAQELI  119 (148)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHHC
Confidence            777778877777777766543

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=98.53  E-value=5.8e-06  Score=59.52  Aligned_cols=134  Identities=7%  Similarity=-0.089  Sum_probs=98.7

Q ss_pred             HHHHhccCC---CCChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCC-CCcHHHHHHHHHHhccccchhhHHHHHHHHHH
Q 036068           25 ARQCFDQMP---ERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNI-MGDEFTIVSILTARANLRALDLGEWIKTYIDK  100 (178)
Q Consensus        25 a~~~~~~m~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~  100 (178)
                      +...|++..   .++..++..+-.++...|++++|++++.+-...+- .-+...+...+..+.+.|+.+.|.+.++.|.+
T Consensus        85 a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~  164 (310)
T 3mv2_B           85 NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN  164 (310)
T ss_dssp             CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence            455555443   24555666888899999999999999999866653 23667888899999999999999999999988


Q ss_pred             hCc---ccchHHHHHHHHH--HHhcC--Chhhhc----------cchhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 036068          101 NKV---KNDIFAGNALIDM--YCICA--DVEKAQ----------KDKFSWTTMIVGLAISGNGDKALDMFSQMLR  158 (178)
Q Consensus       101 ~~~---~~~~~~~~~ll~~--~~~~~--~~~~a~----------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~  158 (178)
                      ...   ..+..+...+..+  ....|  +..+|.          |+..+-..++.++.+.|++++|.+.++.+.+
T Consensus       165 ~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~  239 (310)
T 3mv2_B          165 AIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLNLHLQQRNIAEAQGIVELLLS  239 (310)
T ss_dssp             HSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHS
T ss_pred             cCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            743   1135666666666  33334  777776          4423344555588999999999999998765

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=98.53  E-value=3.4e-06  Score=60.07  Aligned_cols=147  Identities=14%  Similarity=0.034  Sum_probs=106.3

Q ss_pred             HHHHHhccCCCCChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHHhccccchhhHHHHHHHHHHhCc
Q 036068           24 IARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKV  103 (178)
Q Consensus        24 ~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~  103 (178)
                      ...+.++.....+...+..+-..+.+.|++++|...|++..+.. +-+...+..+...+.+.|++++|...++......+
T Consensus       104 ~l~~~l~~~lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p  182 (287)
T 3qou_A          104 AIRALLDXVLPREEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQ  182 (287)
T ss_dssp             HHHHHHHHHSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGC
T ss_pred             HHHHHHHHHcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhc
Confidence            34444444444456667778888899999999999999998875 33567888999999999999999999998877654


Q ss_pred             ccchHHHHH-HHHHHHhcCChhhhc-----------cchhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC---hhHH
Q 036068          104 KNDIFAGNA-LIDMYCICADVEKAQ-----------KDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPD---EVAY  168 (178)
Q Consensus       104 ~~~~~~~~~-ll~~~~~~~~~~~a~-----------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~---~~t~  168 (178)
                        +...... ....+.+.++.+.|.           .+...+..+...+...|++++|.+.|.++++.  .|+   ...+
T Consensus       183 --~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~--~p~~~~~~a~  258 (287)
T 3qou_A          183 --DTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRX--DLTAADGQTR  258 (287)
T ss_dssp             --SHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTGGGGHHH
T ss_pred             --chHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhc--ccccccchHH
Confidence              3332222 222355555555443           36788899999999999999999999999985  354   3445


Q ss_pred             HHHHhhh
Q 036068          169 VGVLSAC  175 (178)
Q Consensus       169 ~~li~a~  175 (178)
                      ..+...+
T Consensus       259 ~~l~~~~  265 (287)
T 3qou_A          259 XTFQEIL  265 (287)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            5444443

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=98.52  E-value=2.3e-06  Score=55.54  Aligned_cols=99  Identities=7%  Similarity=-0.085  Sum_probs=82.2

Q ss_pred             cchhHHHHHHHHHHhcCChhHHHHHhccCCC---CChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHH
Q 036068            4 KDVISWTAIVSRYINRGQVDIARQCFDQMPE---RDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILT   80 (178)
Q Consensus         4 p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~   80 (178)
                      .+...|..+...+.+.|++++|.+.|++..+   .+...|..+-..|.+.|++++|...|++..+.. +-+...|..+-.
T Consensus         9 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~   87 (164)
T 3sz7_A            9 PESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSRLGL   87 (164)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence            4566788888999999999999999987653   377788888889999999999999999988765 335778888888


Q ss_pred             HhccccchhhHHHHHHHHHHhCc
Q 036068           81 ARANLRALDLGEWIKTYIDKNKV  103 (178)
Q Consensus        81 ~~~~~~~~~~a~~~~~~m~~~~~  103 (178)
                      ++.+.|++++|...|+...+...
T Consensus        88 ~~~~~g~~~~A~~~~~~al~~~p  110 (164)
T 3sz7_A           88 ARFDMADYKGAKEAYEKGIEAEG  110 (164)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHS
T ss_pred             HHHHccCHHHHHHHHHHHHHhCC
Confidence            99999999999999988887654

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=98.52  E-value=2.3e-06  Score=52.98  Aligned_cols=97  Identities=9%  Similarity=0.015  Sum_probs=82.8

Q ss_pred             chhHHHHHHHHHHhcCChhHHHHHhccCCC---CChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHH
Q 036068            5 DVISWTAIVSRYINRGQVDIARQCFDQMPE---RDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTA   81 (178)
Q Consensus         5 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~   81 (178)
                      +...|..+-..+.+.|++++|...|++..+   .+...|..+-.+|.+.|++++|...|++..+.. +-+...+..+-.+
T Consensus         3 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~   81 (126)
T 3upv_A            3 KAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATA   81 (126)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHH
Confidence            456788888999999999999999997653   377889999999999999999999999988765 3357788889999


Q ss_pred             hccccchhhHHHHHHHHHHhC
Q 036068           82 RANLRALDLGEWIKTYIDKNK  102 (178)
Q Consensus        82 ~~~~~~~~~a~~~~~~m~~~~  102 (178)
                      +...|++++|...++...+..
T Consensus        82 ~~~~~~~~~A~~~~~~al~~~  102 (126)
T 3upv_A           82 QIAVKEYASALETLDAARTKD  102 (126)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHhCHHHHHHHHHHHHHhC
Confidence            999999999999999888765

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=98.51  E-value=4.5e-06  Score=50.78  Aligned_cols=98  Identities=12%  Similarity=0.147  Sum_probs=79.8

Q ss_pred             hhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHHhccccchhhHHHHHHHHHHhCcccchHHHHHHHHH
Q 036068           37 YVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDM  116 (178)
Q Consensus        37 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~  116 (178)
                      ...|..+...+...|++++|.+.|++..+.. +.+..++..+..++.+.|++++|..+++.+.+....            
T Consensus         9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~------------   75 (125)
T 1na0_A            9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN------------   75 (125)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------------
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCc------------
Confidence            5678888889999999999999999988764 346778888999999999999999999988876422            


Q ss_pred             HHhcCChhhhccchhhHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 036068          117 YCICADVEKAQKDKFSWTTMIVGLAISGNGDKALDMFSQMLRA  159 (178)
Q Consensus       117 ~~~~~~~~~a~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~  159 (178)
                                  +..++..+...+...|++++|.+.++++.+.
T Consensus        76 ------------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~  106 (125)
T 1na0_A           76 ------------NAEAWYNLGNAYYKQGDYDEAIEYYQKALEL  106 (125)
T ss_dssp             ------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             ------------cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence                        2334566777788888999999999998875

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=98.49  E-value=5.5e-07  Score=68.01  Aligned_cols=96  Identities=8%  Similarity=-0.054  Sum_probs=43.8

Q ss_pred             HHHHHHHHHhccccchhhHHHHHHHHHHhCcccchH--HHHHHHH-HHHhcCChhhhc----------------------
Q 036068           73 FTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIF--AGNALID-MYCICADVEKAQ----------------------  127 (178)
Q Consensus        73 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~--~~~~ll~-~~~~~~~~~~a~----------------------  127 (178)
                      .++..+-..+.+.|++++|...|+...+....+...  .+..+.. .+...|+.++|.                      
T Consensus       335 ~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~~~~~  414 (472)
T 4g1t_A          335 RVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKMKDK  414 (472)
T ss_dssp             CCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHHHHHH
T ss_pred             hhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHH
Confidence            344555566667777777777777766654333211  1111111 223455555553                      


Q ss_pred             -------------cchhhHHHHHHHHHhcCChhHHHHHHHHHHHcC-CCCChhHH
Q 036068          128 -------------KDKFSWTTMIVGLAISGNGDKALDMFSQMLRAS-IKPDEVAY  168 (178)
Q Consensus       128 -------------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g-~~p~~~t~  168 (178)
                                   .+..+|+.+-..|...|++++|.+.|++.++.| ..|+..++
T Consensus       415 l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~  469 (472)
T 4g1t_A          415 LQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSW  469 (472)
T ss_dssp             HHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC----------------------
T ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhc
Confidence                         256778888888888899999999998888753 55665544

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=98.49  E-value=7.8e-06  Score=50.45  Aligned_cols=99  Identities=12%  Similarity=0.031  Sum_probs=80.5

Q ss_pred             ChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHHhccccchhhHHHHHHHHHHhCcccchHHHHHHHH
Q 036068           36 DYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALID  115 (178)
Q Consensus        36 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~  115 (178)
                      +...|..+...+.+.|++++|.+.|++..+.. +.+...+..+..++.+.|++++|.+.++...+....           
T Consensus        15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-----------   82 (133)
T 2lni_A           15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPT-----------   82 (133)
T ss_dssp             HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTT-----------
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-----------
Confidence            66788889999999999999999999988764 336788889999999999999999999988886432           


Q ss_pred             HHHhcCChhhhccchhhHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 036068          116 MYCICADVEKAQKDKFSWTTMIVGLAISGNGDKALDMFSQMLRA  159 (178)
Q Consensus       116 ~~~~~~~~~~a~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~  159 (178)
                                   +...|..+...+.+.|++++|.+.|++..+.
T Consensus        83 -------------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~  113 (133)
T 2lni_A           83 -------------FIKGYTRKAAALEAMKDYTKAMDVYQKALDL  113 (133)
T ss_dssp             -------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             -------------chHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence                         2334566667777888888888888888764

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=98.48  E-value=3e-06  Score=65.93  Aligned_cols=122  Identities=9%  Similarity=0.030  Sum_probs=106.0

Q ss_pred             cchhHHHHHHHHHHhcCChhHHHHHhccCCC---CChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHH
Q 036068            4 KDVISWTAIVSRYINRGQVDIARQCFDQMPE---RDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILT   80 (178)
Q Consensus         4 p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~   80 (178)
                      .+...|..+...+.+.|++++|.+.|++..+   .+...|..+-..|.+.|++++|.+.|++..+.. +-+...+..+..
T Consensus        21 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~   99 (568)
T 2vsy_A           21 QDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQQASDAA-PEHPGIALWLGH   99 (568)
T ss_dssp             CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Confidence            3567889999999999999999999998654   367789999999999999999999999988865 335778899999


Q ss_pred             HhccccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHhc---CChhhhc
Q 036068           81 ARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC---ADVEKAQ  127 (178)
Q Consensus        81 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~---~~~~~a~  127 (178)
                      ++.+.|++++|.+.++...+... .+...+..+...+.+.   |+.++|.
T Consensus       100 ~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~~~~g~~~~A~  148 (568)
T 2vsy_A          100 ALEDAGQAEAAAAAYTRAHQLLP-EEPYITAQLLNWRRRLCDWRALDVLS  148 (568)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCTTHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhhccccHHHHH
Confidence            99999999999999999988764 3577888999999999   8888876

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=98.48  E-value=5.1e-06  Score=50.98  Aligned_cols=99  Identities=10%  Similarity=0.012  Sum_probs=78.2

Q ss_pred             ChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHHhccccchhhHHHHHHHHHHhCcccchHHHHHHHH
Q 036068           36 DYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALID  115 (178)
Q Consensus        36 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~  115 (178)
                      +...+..+...+...|++++|...|++..+.. +.+...+..+..++...|++++|.+.++...+....           
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-----------   78 (131)
T 2vyi_A           11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPA-----------   78 (131)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-----------
T ss_pred             hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCcc-----------
Confidence            55677888889999999999999999987764 336778888899999999999999999988876432           


Q ss_pred             HHHhcCChhhhccchhhHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 036068          116 MYCICADVEKAQKDKFSWTTMIVGLAISGNGDKALDMFSQMLRA  159 (178)
Q Consensus       116 ~~~~~~~~~~a~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~  159 (178)
                                   +...+..+...+...|++++|...|++..+.
T Consensus        79 -------------~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~  109 (131)
T 2vyi_A           79 -------------YSKAYGRMGLALSSLNKHVEAVAYYKKALEL  109 (131)
T ss_dssp             -------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             -------------CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence                         1234556666777788888888888888765

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=98.47  E-value=1.3e-06  Score=55.55  Aligned_cols=97  Identities=12%  Similarity=0.012  Sum_probs=64.0

Q ss_pred             chhHHHHHHHHHHhcCChhHHHHHhccCCC--C-ChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHH
Q 036068            5 DVISWTAIVSRYINRGQVDIARQCFDQMPE--R-DYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTA   81 (178)
Q Consensus         5 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~   81 (178)
                      +...+..+...+.+.|++++|...|++...  | +...|..+-..|.+.|++++|...|++..+.. +-+...+..+-.+
T Consensus        17 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~   95 (142)
T 2xcb_A           17 TLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMD-INEPRFPFHAAEC   95 (142)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHH
Confidence            344555666677777777777777776542  2 55666666677777777777777777766654 2345566666677


Q ss_pred             hccccchhhHHHHHHHHHHhC
Q 036068           82 RANLRALDLGEWIKTYIDKNK  102 (178)
Q Consensus        82 ~~~~~~~~~a~~~~~~m~~~~  102 (178)
                      +...|++++|...++...+..
T Consensus        96 ~~~~g~~~~A~~~~~~al~~~  116 (142)
T 2xcb_A           96 HLQLGDLDGAESGFYSARALA  116 (142)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHhC
Confidence            777777777777777666543

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=98.46  E-value=5.8e-06  Score=54.33  Aligned_cols=123  Identities=9%  Similarity=-0.021  Sum_probs=93.6

Q ss_pred             cchhHHHHHHHHHHhcCChhHHHHHhccCCC--CChhHHHHHHHH-HhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHH
Q 036068            4 KDVISWTAIVSRYINRGQVDIARQCFDQMPE--RDYVLWTAMIDG-YLRVNRFREALTLFQEMQTSNIMGDEFTIVSILT   80 (178)
Q Consensus         4 p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~--~~~~~~~~li~~-~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~   80 (178)
                      .+...|..+...+.+.|++++|...|++..+  |+...+..+... +.+.++..+|...|++..+.. +-+...+..+-.
T Consensus        38 ~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~-P~~~~~~~~la~  116 (176)
T 2r5s_A           38 SRGDVKLAKADCLLETKQFELAQELLATIPLEYQDNSYKSLIAKLELHQQAAESPELKRLEQELAAN-PDNFELACELAV  116 (176)
T ss_dssp             TSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGCCHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHS-TTCHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccCChHHHHHHHHHHHHhhcccchHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence            4567788999999999999999999999875  333333222111 223233455788888887764 225788889999


Q ss_pred             HhccccchhhHHHHHHHHHHhCccc-chHHHHHHHHHHHhcCChhhhc
Q 036068           81 ARANLRALDLGEWIKTYIDKNKVKN-DIFAGNALIDMYCICADVEKAQ  127 (178)
Q Consensus        81 ~~~~~~~~~~a~~~~~~m~~~~~~~-~~~~~~~ll~~~~~~~~~~~a~  127 (178)
                      ++.+.|++++|...++...+..+.+ +...+..+...+...|+.++|.
T Consensus       117 ~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~  164 (176)
T 2r5s_A          117 QYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIA  164 (176)
T ss_dssp             HHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHH
T ss_pred             HHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHH
Confidence            9999999999999999999887654 4678999999999999998764

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=98.44  E-value=5.4e-06  Score=60.47  Aligned_cols=119  Identities=11%  Similarity=0.027  Sum_probs=60.5

Q ss_pred             hhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCc--------------HHHHHHHHHHhccccchhhHHHHHHHHHHhC
Q 036068           37 YVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGD--------------EFTIVSILTARANLRALDLGEWIKTYIDKNK  102 (178)
Q Consensus        37 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~--------------~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~  102 (178)
                      ...|..+-..|.+.|++++|...|++..+..-...              ...|..+-.++.+.|++++|...++...+..
T Consensus       147 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~  226 (336)
T 1p5q_A          147 STIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELD  226 (336)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence            33444455555555555555555555544321110              2455555555555555555555555555543


Q ss_pred             cccchHHHHHHHHHHHhcCChhhhc-----------cchhhHHHHHHHHHhcCChhHH-HHHHHHH
Q 036068          103 VKNDIFAGNALIDMYCICADVEKAQ-----------KDKFSWTTMIVGLAISGNGDKA-LDMFSQM  156 (178)
Q Consensus       103 ~~~~~~~~~~ll~~~~~~~~~~~a~-----------~~~~~~~~li~~~~~~~~~~~a-~~~~~~m  156 (178)
                      + .+...+..+-.+|...|++++|.           .+...+..+...+.+.|+.+++ ..+|++|
T Consensus       227 p-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~  291 (336)
T 1p5q_A          227 S-NNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANM  291 (336)
T ss_dssp             T-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             C-CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            2 23445555555555555555554           1344555555666666666655 3344444

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=98.43  E-value=1.3e-05  Score=49.41  Aligned_cols=98  Identities=10%  Similarity=-0.063  Sum_probs=77.2

Q ss_pred             hhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHHhccccchhhHHHHHHHHHHhCcccchHHHHHHHHH
Q 036068           37 YVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDM  116 (178)
Q Consensus        37 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~  116 (178)
                      ...|..+-..+.+.|++++|...|++..+.. +.+...|..+..++.+.|++++|...++...+..+.            
T Consensus         4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~------------   70 (126)
T 3upv_A            4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPN------------   70 (126)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------------
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC------------
Confidence            3456677788889999999999999988765 346788888999999999999999999988876532            


Q ss_pred             HHhcCChhhhccchhhHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 036068          117 YCICADVEKAQKDKFSWTTMIVGLAISGNGDKALDMFSQMLRA  159 (178)
Q Consensus       117 ~~~~~~~~~a~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~  159 (178)
                                  +...|..+...+...|++++|.+.|++..+.
T Consensus        71 ------------~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~  101 (126)
T 3upv_A           71 ------------FVRAYIRKATAQIAVKEYASALETLDAARTK  101 (126)
T ss_dssp             ------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             ------------cHHHHHHHHHHHHHHhCHHHHHHHHHHHHHh
Confidence                        2334566667777788888888888887754

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=98.43  E-value=1.5e-06  Score=53.50  Aligned_cols=111  Identities=8%  Similarity=-0.020  Sum_probs=87.9

Q ss_pred             chhHHHHHHHHHHhcCChhHHHHHhccCCC---CChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCC--CCc----HHHH
Q 036068            5 DVISWTAIVSRYINRGQVDIARQCFDQMPE---RDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNI--MGD----EFTI   75 (178)
Q Consensus         5 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~--~~~----~~~~   75 (178)
                      ....|..+...+...|++++|...|++..+   .+...+..+...+...|++++|...+++......  .++    ..++
T Consensus         3 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~   82 (131)
T 1elr_A            3 QALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAY   82 (131)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHH
Confidence            356788889999999999999999997653   4677888889999999999999999999876531  112    6778


Q ss_pred             HHHHHHhccccchhhHHHHHHHHHHhCcccchHHHHHHHHHH
Q 036068           76 VSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMY  117 (178)
Q Consensus        76 ~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~  117 (178)
                      ..+..++.+.|++++|.+.++...+..  |+......+-...
T Consensus        83 ~~la~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~  122 (131)
T 1elr_A           83 ARIGNSYFKEEKYKDAIHFYNKSLAEH--RTPDVLKKCQQAE  122 (131)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHH
T ss_pred             HHHHHHHHHhccHHHHHHHHHHHHHhC--CCHHHHHHHHHHH
Confidence            888899999999999999999988865  3555555554443

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=98.43  E-value=8.8e-06  Score=52.16  Aligned_cols=98  Identities=11%  Similarity=-0.011  Sum_probs=73.6

Q ss_pred             ChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHHhccccchhhHHHHHHHHHHhCcccchHHHHHHHH
Q 036068           36 DYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALID  115 (178)
Q Consensus        36 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~  115 (178)
                      +...+..+-..+.+.|++++|...|++..... +.+...|..+-.++.+.|++++|...++...+..+. ++.       
T Consensus        20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~-------   90 (148)
T 2vgx_A           20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIX-EPR-------   90 (148)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTH-------
T ss_pred             hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-Cch-------
Confidence            55667777888889999999999999987765 336778888888899999999999999988876532 233       


Q ss_pred             HHHhcCChhhhccchhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 036068          116 MYCICADVEKAQKDKFSWTTMIVGLAISGNGDKALDMFSQMLR  158 (178)
Q Consensus       116 ~~~~~~~~~~a~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~  158 (178)
                                      .|..+...+...|++++|...|++.++
T Consensus        91 ----------------~~~~lg~~~~~~g~~~~A~~~~~~al~  117 (148)
T 2vgx_A           91 ----------------FPFHAAECLLQXGELAEAESGLFLAQE  117 (148)
T ss_dssp             ----------------HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             ----------------HHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence                            344555566666666777777766665

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=98.42  E-value=2.3e-06  Score=62.43  Aligned_cols=132  Identities=11%  Similarity=0.015  Sum_probs=108.7

Q ss_pred             chhHHHHHHHHHHhcCChhHHHHHhccCCC--C-C---------------hhHHHHHHHHHhhcCChhHHHHHHHHhHhC
Q 036068            5 DVISWTAIVSRYINRGQVDIARQCFDQMPE--R-D---------------YVLWTAMIDGYLRVNRFREALTLFQEMQTS   66 (178)
Q Consensus         5 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~--~-~---------------~~~~~~li~~~~~~~~~~~a~~~~~~m~~~   66 (178)
                      +...|..+-..+.+.|++++|...|++..+  | +               ...|..+-..|.+.|++++|...+++..+.
T Consensus       146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~  225 (336)
T 1p5q_A          146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALEL  225 (336)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            355788899999999999999999998653  3 2               478999999999999999999999999887


Q ss_pred             CCCCcHHHHHHHHHHhccccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHhcCChhhhccchhhHHHHHHHH
Q 036068           67 NIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQKDKFSWTTMIVGL  140 (178)
Q Consensus        67 ~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~li~~~  140 (178)
                      . +.+...+..+-.++.+.|++++|...|+...+..+. +...+..+-..+.+.|+.+++.  ...|..++..+
T Consensus       226 ~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~a~~~l~~~~~~~~~~~~a~--~~~~~~~~~~~  295 (336)
T 1p5q_A          226 D-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPN-NKAAKTQLAVCQQRIRRQLARE--KKLYANMFERL  295 (336)
T ss_dssp             C-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHH
T ss_pred             C-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHh
Confidence            5 346788999999999999999999999999987643 5778888999999999988774  22444444433

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=98.42  E-value=2.4e-05  Score=54.56  Aligned_cols=124  Identities=10%  Similarity=-0.088  Sum_probs=99.7

Q ss_pred             CCChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCc----HHHHHHHHHHhccccchhhHHHHHHHHHHhCcc--cch
Q 036068           34 ERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGD----EFTIVSILTARANLRALDLGEWIKTYIDKNKVK--NDI  107 (178)
Q Consensus        34 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~----~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~--~~~  107 (178)
                      ..+...+-.+-..+.+.|++++|...|++..+..  |+    ...+..+..++.+.|++++|...++...+..+.  ...
T Consensus        12 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~   89 (261)
T 3qky_A           12 HSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG--RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVP   89 (261)
T ss_dssp             CSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC--SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHH
T ss_pred             CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC--CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhH
Confidence            3466677778888899999999999999998864  33    567888889999999999999999999987542  235


Q ss_pred             HHHHHHHHHHHh--------cCChhhhc----------cc-hhhH-----------------HHHHHHHHhcCChhHHHH
Q 036068          108 FAGNALIDMYCI--------CADVEKAQ----------KD-KFSW-----------------TTMIVGLAISGNGDKALD  151 (178)
Q Consensus       108 ~~~~~ll~~~~~--------~~~~~~a~----------~~-~~~~-----------------~~li~~~~~~~~~~~a~~  151 (178)
                      ..+..+-..+.+        .|++++|.          |+ ...+                 ..+...|.+.|++++|..
T Consensus        90 ~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~  169 (261)
T 3qky_A           90 QAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAV  169 (261)
T ss_dssp             HHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHH
Confidence            567777778888        89999987          33 3333                 445678899999999999


Q ss_pred             HHHHHHHc
Q 036068          152 MFSQMLRA  159 (178)
Q Consensus       152 ~~~~m~~~  159 (178)
                      .|++.++.
T Consensus       170 ~~~~~l~~  177 (261)
T 3qky_A          170 TYEAVFDA  177 (261)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99999875

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=98.40  E-value=3.3e-06  Score=60.02  Aligned_cols=98  Identities=10%  Similarity=-0.013  Sum_probs=84.4

Q ss_pred             cchhHHHHHHHHHHhcCChhHHHHHhccCCC--C-ChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHH
Q 036068            4 KDVISWTAIVSRYINRGQVDIARQCFDQMPE--R-DYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILT   80 (178)
Q Consensus         4 p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~   80 (178)
                      .+...+..+...+.+.|++++|...|++..+  | +...|..+-..|.+.|++++|.+.+++..+.. +-+...+..+..
T Consensus         2 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~   80 (281)
T 2c2l_A            2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQ   80 (281)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence            4567788899999999999999999998753  4 78889999999999999999999999988764 335678888999


Q ss_pred             HhccccchhhHHHHHHHHHHhC
Q 036068           81 ARANLRALDLGEWIKTYIDKNK  102 (178)
Q Consensus        81 ~~~~~~~~~~a~~~~~~m~~~~  102 (178)
                      ++.+.|++++|...++...+..
T Consensus        81 ~~~~~g~~~~A~~~~~~al~l~  102 (281)
T 2c2l_A           81 CQLEMESYDEAIANLQRAYSLA  102 (281)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHhC
Confidence            9999999999999998877654

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=98.40  E-value=1.9e-05  Score=49.20  Aligned_cols=114  Identities=6%  Similarity=-0.090  Sum_probs=84.3

Q ss_pred             hHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHHhccccchhhHHHHHHHHHHhCcccchHHHHHHHHHH
Q 036068           38 VLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMY  117 (178)
Q Consensus        38 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~  117 (178)
                      ..+.-|-..+.+.|++++|++.|++..+.. +-+...|..+-.+|.+.|++++|.+.++...+..... ...+..+.   
T Consensus         9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~-~~~~~~~a---   83 (127)
T 4gcn_A            9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRET-RADYKLIA---   83 (127)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT-TCCHHHHH---
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCccc-chhhHHHH---
Confidence            356677788899999999999999987764 3356788889999999999999999998887654321 11122222   


Q ss_pred             HhcCChhhhccchhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhHHHHH
Q 036068          118 CICADVEKAQKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGV  171 (178)
Q Consensus       118 ~~~~~~~~a~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~l  171 (178)
                                   .+|..+-..+...|++++|++.|++.++.  .||..+...|
T Consensus        84 -------------~~~~~lg~~~~~~~~~~~A~~~~~kal~~--~~~~~~~~~l  122 (127)
T 4gcn_A           84 -------------KAMSRAGNAFQKQNDLSLAVQWFHRSLSE--FRDPELVKKV  122 (127)
T ss_dssp             -------------HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCCHHHHHHH
T ss_pred             -------------HHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CcCHHHHHHH
Confidence                         23555667788899999999999998864  5777665544

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=98.40  E-value=9.6e-06  Score=54.56  Aligned_cols=118  Identities=10%  Similarity=-0.070  Sum_probs=95.2

Q ss_pred             CcchhHHHHHHHHHHhcCChhHHHHHhccCCC---CChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCC-----------
Q 036068            3 NKDVISWTAIVSRYINRGQVDIARQCFDQMPE---RDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNI-----------   68 (178)
Q Consensus         3 ~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~-----------   68 (178)
                      +|+...|..+...+.+.|++++|.+.|++..+   .+...|..+-..|.+.|++++|.+.|++..+..-           
T Consensus        34 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~  113 (213)
T 1hh8_A           34 DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILG  113 (213)
T ss_dssp             SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGT
T ss_pred             CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhc
Confidence            35778899999999999999999999998653   4777899999999999999999999999877531           


Q ss_pred             ---CC-cHHHHHHHHHHhccccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHhc
Q 036068           69 ---MG-DEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC  120 (178)
Q Consensus        69 ---~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~  120 (178)
                         .| ....+..+..++.+.|++++|...++...+.............+..+.+.
T Consensus       114 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~  169 (213)
T 1hh8_A          114 LQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPRHSKIDKAMECVWKQ  169 (213)
T ss_dssp             BCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSGGGGHHHHHHHHHHTT
T ss_pred             cccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCcccccchHHHHHHHHHhc
Confidence               11 23678888999999999999999999999877655555555555555443

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=98.39  E-value=1.2e-05  Score=50.90  Aligned_cols=98  Identities=12%  Similarity=-0.017  Sum_probs=72.7

Q ss_pred             ChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHHhccccchhhHHHHHHHHHHhCcccchHHHHHHHH
Q 036068           36 DYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALID  115 (178)
Q Consensus        36 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~  115 (178)
                      +...+..+-..+.+.|++++|...|++..... +.+...|..+-.++.+.|++++|...++...+..+. ++.       
T Consensus        17 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~-------   87 (142)
T 2xcb_A           17 TLEQLYALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMDIN-EPR-------   87 (142)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTH-------
T ss_pred             HHHHHHHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CcH-------
Confidence            44556667778889999999999999988765 336778888888899999999999999998887533 233       


Q ss_pred             HHHhcCChhhhccchhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 036068          116 MYCICADVEKAQKDKFSWTTMIVGLAISGNGDKALDMFSQMLR  158 (178)
Q Consensus       116 ~~~~~~~~~~a~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~  158 (178)
                                      .|..+...+...|++++|...|++.++
T Consensus        88 ----------------~~~~lg~~~~~~g~~~~A~~~~~~al~  114 (142)
T 2xcb_A           88 ----------------FPFHAAECHLQLGDLDGAESGFYSARA  114 (142)
T ss_dssp             ----------------HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             ----------------HHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence                            344555566666666677777766654

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=98.39  E-value=1.7e-05  Score=49.36  Aligned_cols=99  Identities=6%  Similarity=-0.154  Sum_probs=77.8

Q ss_pred             CChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHHhccccchhhHHHHHHHHHHhCcccchHHHHHHH
Q 036068           35 RDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALI  114 (178)
Q Consensus        35 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll  114 (178)
                      .+...|..+-..+...|++++|...|++..+.. +.+...+..+..++.+.|++++|...++...+.... +        
T Consensus         7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~--------   76 (137)
T 3q49_B            7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ-S--------   76 (137)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-C--------
T ss_pred             ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCch-h--------
Confidence            467788888899999999999999999987765 335778888999999999999999999988886532 2        


Q ss_pred             HHHHhcCChhhhccchhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 036068          115 DMYCICADVEKAQKDKFSWTTMIVGLAISGNGDKALDMFSQMLR  158 (178)
Q Consensus       115 ~~~~~~~~~~~a~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~  158 (178)
                                     ...|..+...+...|++++|...|++..+
T Consensus        77 ---------------~~~~~~l~~~~~~~~~~~~A~~~~~~a~~  105 (137)
T 3q49_B           77 ---------------VKAHFFLGQCQLEMESYDEAIANLQRAYS  105 (137)
T ss_dssp             ---------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             ---------------HHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence                           33455666666777777777777777764

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=98.39  E-value=1.2e-05  Score=53.55  Aligned_cols=151  Identities=11%  Similarity=-0.040  Sum_probs=111.9

Q ss_pred             cchhHHHHHHHHHHhcCChhHHHHHhccCCC---------CChhHHHHHHHHHhhcCChhHHHHHHHHhHhC----CCCC
Q 036068            4 KDVISWTAIVSRYINRGQVDIARQCFDQMPE---------RDYVLWTAMIDGYLRVNRFREALTLFQEMQTS----NIMG   70 (178)
Q Consensus         4 p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~---------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----~~~~   70 (178)
                      ....++..+...+...|++++|...+++..+         .....+..+-..+...|++++|.+.+++..+.    +-.|
T Consensus        24 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  103 (203)
T 3gw4_A           24 TASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDP  103 (203)
T ss_dssp             THHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCH
T ss_pred             HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccH
Confidence            4567889999999999999999999887653         14557888888999999999999999986543    2122


Q ss_pred             --cHHHHHHHHHHhccccchhhHHHHHHHHHHh----Ccc-cchHHHHHHHHHHHhcCChhhhccchhhHHHHHHHHHhc
Q 036068           71 --DEFTIVSILTARANLRALDLGEWIKTYIDKN----KVK-NDIFAGNALIDMYCICADVEKAQKDKFSWTTMIVGLAIS  143 (178)
Q Consensus        71 --~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~----~~~-~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~li~~~~~~  143 (178)
                        ....+..+-..+...|++++|...++...+.    +.. .-..++..+-..+.+.|++++|.   ..+...+..+.+.
T Consensus       104 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~---~~~~~al~~~~~~  180 (203)
T 3gw4_A          104 LAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQ---QHWLRARDIFAEL  180 (203)
T ss_dssp             HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH---HHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHH---HHHHHHHHHHHHc
Confidence              2456778888899999999999999877643    211 11344677888899999999873   4466667777777


Q ss_pred             CChhHHHHHHHHHH
Q 036068          144 GNGDKALDMFSQML  157 (178)
Q Consensus       144 ~~~~~a~~~~~~m~  157 (178)
                      |+....-.+...+-
T Consensus       181 ~~~~~~~~~~~~~~  194 (203)
T 3gw4_A          181 EDSEAVNELMTRLN  194 (203)
T ss_dssp             TCHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHhccc
Confidence            77665555555544

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=98.36  E-value=0.00011  Score=55.93  Aligned_cols=149  Identities=9%  Similarity=-0.003  Sum_probs=82.0

Q ss_pred             chhHHHHHHHHHHh----cCChhHHHHHhccCCC-CChhHHHHHHHHHhh----cCChhHHHHHHHHhHhCCCCCcHHHH
Q 036068            5 DVISWTAIVSRYIN----RGQVDIARQCFDQMPE-RDYVLWTAMIDGYLR----VNRFREALTLFQEMQTSNIMGDEFTI   75 (178)
Q Consensus         5 ~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~-~~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~~~~~~~~~~   75 (178)
                      ++..+..+-..|..    .+++++|...|++.-+ .+...+..|-..|..    .++.++|.+.|++..+.|   +...+
T Consensus        38 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~  114 (490)
T 2xm6_A           38 EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQGYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LPQAQ  114 (490)
T ss_dssp             CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHH
T ss_pred             CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHH
Confidence            34444555555555    6666777666665432 355555556666665    666666666666666554   33444


Q ss_pred             HHHHHHhcc----ccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHh----cCChhhhc---------cchhhHHHHHH
Q 036068           76 VSILTARAN----LRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCI----CADVEKAQ---------KDKFSWTTMIV  138 (178)
Q Consensus        76 ~~ll~~~~~----~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~---------~~~~~~~~li~  138 (178)
                      ..+-..|..    .+++++|...|+...+.|   ++..+..+-..|..    .++.++|.         .+...+..+-.
T Consensus       115 ~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~  191 (490)
T 2xm6_A          115 QNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQGNVWSCNQLGY  191 (490)
T ss_dssp             HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence            445555544    556666666666665554   23344444444544    44555554         24445555555


Q ss_pred             HHHh----cCChhHHHHHHHHHHHc
Q 036068          139 GLAI----SGNGDKALDMFSQMLRA  159 (178)
Q Consensus       139 ~~~~----~~~~~~a~~~~~~m~~~  159 (178)
                      .|..    .++.++|.+.|++..+.
T Consensus       192 ~y~~g~g~~~~~~~A~~~~~~a~~~  216 (490)
T 2xm6_A          192 MYSRGLGVERNDAISAQWYRKSATS  216 (490)
T ss_dssp             HHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred             HHhcCCCCCcCHHHHHHHHHHHHHC
Confidence            5554    55666666666655544

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=98.36  E-value=1.8e-06  Score=57.89  Aligned_cols=145  Identities=13%  Similarity=-0.021  Sum_probs=75.2

Q ss_pred             HHHHHHhcCChhHHHHHhccCCCC---ChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCC-Cc--------------HH
Q 036068           12 IVSRYINRGQVDIARQCFDQMPER---DYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIM-GD--------------EF   73 (178)
Q Consensus        12 li~~~~~~~~~~~a~~~~~~m~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~-~~--------------~~   73 (178)
                      .+......|+++.+.+.|+.-.+.   ....+..+-..+.+.|++++|...|++..+..-. |+              ..
T Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~   89 (198)
T 2fbn_A           10 HSSGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEIS   89 (198)
T ss_dssp             ------------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHH
T ss_pred             hhhhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHH
Confidence            344455566677766666644322   4445666667777778888888888777654211 10              25


Q ss_pred             HHHHHHHHhccccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHhcCChhhhc----------c-chhhHHHHHHHHHh
Q 036068           74 TIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ----------K-DKFSWTTMIVGLAI  142 (178)
Q Consensus        74 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~----------~-~~~~~~~li~~~~~  142 (178)
                      .+..+..++.+.|++++|...++...+... .+...+..+-..|...|++++|.          | +...+..+...+..
T Consensus        90 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~  168 (198)
T 2fbn_A           90 CNLNLATCYNKNKDYPKAIDHASKVLKIDK-NNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNK  168 (198)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHH
Confidence            666777777778888888888877776643 24555555666666666666654          1 33444444455555


Q ss_pred             cCChhHHH-HHHHHHH
Q 036068          143 SGNGDKAL-DMFSQML  157 (178)
Q Consensus       143 ~~~~~~a~-~~~~~m~  157 (178)
                      .++.+++. ..|..|.
T Consensus       169 ~~~~~~~~~~~~~~~f  184 (198)
T 2fbn_A          169 LKEARKKDKLTFGGMF  184 (198)
T ss_dssp             HHHHHC----------
T ss_pred             HHHHHHHHHHHHHHHh
Confidence            55554444 3444443

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=98.36  E-value=1.4e-05  Score=51.78  Aligned_cols=90  Identities=10%  Similarity=-0.058  Sum_probs=70.6

Q ss_pred             ChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHHhccccchhhHHHHHHHHHHhCcccchHHHHHHHH
Q 036068           36 DYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALID  115 (178)
Q Consensus        36 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~  115 (178)
                      +...|..+-..+.+.|++++|.+.|++..+.. +-+...|..+..++.+.|++++|...++...+.... +...|..+-.
T Consensus        10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~   87 (164)
T 3sz7_A           10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPK-YSKAWSRLGL   87 (164)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHH
Confidence            56678888889999999999999999988765 336788889999999999999999999999887643 3555555555


Q ss_pred             HHHhcCChhhhc
Q 036068          116 MYCICADVEKAQ  127 (178)
Q Consensus       116 ~~~~~~~~~~a~  127 (178)
                      .|.+.|++++|.
T Consensus        88 ~~~~~g~~~~A~   99 (164)
T 3sz7_A           88 ARFDMADYKGAK   99 (164)
T ss_dssp             HHHHTTCHHHHH
T ss_pred             HHHHccCHHHHH
Confidence            555555555553

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=98.36  E-value=1.5e-05  Score=47.47  Aligned_cols=101  Identities=12%  Similarity=-0.019  Sum_probs=81.3

Q ss_pred             ChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHHhccccchhhHHHHHHHHHHhCcccchHHHHHHHH
Q 036068           36 DYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALID  115 (178)
Q Consensus        36 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~  115 (178)
                      +...|..+...+.+.|++++|...|++..+.. +.+...+..+..++.+.|++++|.+.++...+.....          
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~----------   73 (112)
T 2kck_A            5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDE----------   73 (112)
T ss_dssp             STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCT----------
T ss_pred             cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCccc----------
Confidence            45667778888999999999999999988764 3356788888899999999999999999888764320          


Q ss_pred             HHHhcCChhhhccchhhHHHHHHHHHhc-CChhHHHHHHHHHHHc
Q 036068          116 MYCICADVEKAQKDKFSWTTMIVGLAIS-GNGDKALDMFSQMLRA  159 (178)
Q Consensus       116 ~~~~~~~~~~a~~~~~~~~~li~~~~~~-~~~~~a~~~~~~m~~~  159 (178)
                                  .+...|..+...+.+. |++++|.+.+++..+.
T Consensus        74 ------------~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~  106 (112)
T 2kck_A           74 ------------YNKDVWAAKADALRYIEGKEVEAEIAEARAKLE  106 (112)
T ss_dssp             ------------TCHHHHHHHHHHHTTCSSCSHHHHHHHHHHGGG
T ss_pred             ------------chHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhc
Confidence                        1234567777888889 9999999999998875

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=98.35  E-value=5.4e-05  Score=57.73  Aligned_cols=146  Identities=12%  Similarity=0.014  Sum_probs=71.9

Q ss_pred             hHHHHHHHHHHh----cCChhHHHHHhccCCCC-ChhHHHHHHHHHhh----cCChhHHHHHHHHhHhCCCCCcHHHHHH
Q 036068            7 ISWTAIVSRYIN----RGQVDIARQCFDQMPER-DYVLWTAMIDGYLR----VNRFREALTLFQEMQTSNIMGDEFTIVS   77 (178)
Q Consensus         7 ~~~~~li~~~~~----~~~~~~a~~~~~~m~~~-~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~~~~~~~~~~~~   77 (178)
                      ..+..|-..|..    .+++++|.+.|++..+. +...+..|-..|..    .+++++|.+.|++..+.|   +...+..
T Consensus        76 ~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~  152 (490)
T 2xm6_A           76 PAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKGLPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQS  152 (490)
T ss_dssp             HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred             HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHH
Confidence            344445555555    56666666666654332 44445555555554    456666666666655544   2333444


Q ss_pred             HHHHhcc----ccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHh----cCChhhhc---------cchhhHHHHHHHH
Q 036068           78 ILTARAN----LRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCI----CADVEKAQ---------KDKFSWTTMIVGL  140 (178)
Q Consensus        78 ll~~~~~----~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~---------~~~~~~~~li~~~  140 (178)
                      +-..|..    .+++++|.+.|+...+.|   ++..+..+-..|..    .++.++|.         .+...+..+...|
T Consensus       153 Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y  229 (490)
T 2xm6_A          153 MGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSGDELGQLHLADMY  229 (490)
T ss_dssp             HHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            4444443    445555555555555543   23444444444444    44444443         2333344444444


Q ss_pred             Hh----cCChhHHHHHHHHHHH
Q 036068          141 AI----SGNGDKALDMFSQMLR  158 (178)
Q Consensus       141 ~~----~~~~~~a~~~~~~m~~  158 (178)
                      ..    .+++++|.++|++..+
T Consensus       230 ~~g~g~~~~~~~A~~~~~~a~~  251 (490)
T 2xm6_A          230 YFGIGVTQDYTQSRVLFSQSAE  251 (490)
T ss_dssp             HHTSSSCCCHHHHHHHHHHHHT
T ss_pred             HcCCCCCCCHHHHHHHHHHHHH
Confidence            43    4445555555544443

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=98.35  E-value=6.2e-05  Score=53.50  Aligned_cols=119  Identities=8%  Similarity=0.027  Sum_probs=91.6

Q ss_pred             HHHHHHHHhhcCChhHHHHHHHHhHhCC-CCCcH----HHHHHHHHHhccccchhhHHHHHHHHHHhCcc-cc----hHH
Q 036068           40 WTAMIDGYLRVNRFREALTLFQEMQTSN-IMGDE----FTIVSILTARANLRALDLGEWIKTYIDKNKVK-ND----IFA  109 (178)
Q Consensus        40 ~~~li~~~~~~~~~~~a~~~~~~m~~~~-~~~~~----~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~-~~----~~~  109 (178)
                      +...+..+...|++++|.+.+++..... ..|+.    ..+..+...+...+++++|...++...+.... ++    ..+
T Consensus        78 l~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~  157 (293)
T 3u3w_A           78 FKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYI  157 (293)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHH
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHH
Confidence            3344778889999999999999987643 22332    23335666778888999999999998874322 22    336


Q ss_pred             HHHHHHHHHhcCChhhhc------------------cchhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 036068          110 GNALIDMYCICADVEKAQ------------------KDKFSWTTMIVGLAISGNGDKALDMFSQMLR  158 (178)
Q Consensus       110 ~~~ll~~~~~~~~~~~a~------------------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~  158 (178)
                      ++.+-..|...|++++|.                  ....+|..+...|.+.|++++|.+.+++.++
T Consensus       158 ~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~  224 (293)
T 3u3w_A          158 ENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIE  224 (293)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence            899999999999999987                  1234788899999999999999999998875

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=98.35  E-value=3e-05  Score=46.53  Aligned_cols=102  Identities=11%  Similarity=-0.019  Sum_probs=80.3

Q ss_pred             hhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHHhccccchhhHHHHHHHHHHhCcccchHHHHHHHHH
Q 036068           37 YVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDM  116 (178)
Q Consensus        37 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~  116 (178)
                      ...+..+...+...|++++|...|++..... +.+...+..+..++.+.|++++|...++...+....            
T Consensus         4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~------------   70 (118)
T 1elw_A            4 VNELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPD------------   70 (118)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT------------
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcc------------
Confidence            4567778888899999999999999987764 336778888888999999999999999888876432            


Q ss_pred             HHhcCChhhhccchhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCh
Q 036068          117 YCICADVEKAQKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDE  165 (178)
Q Consensus       117 ~~~~~~~~~a~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~  165 (178)
                                  +...+..+...+...|++++|.+.+++..+.  .|+.
T Consensus        71 ------------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~  105 (118)
T 1elw_A           71 ------------WGKGYSRKAAALEFLNRFEEAKRTYEEGLKH--EANN  105 (118)
T ss_dssp             ------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CTTC
T ss_pred             ------------cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHc--CCCC
Confidence                        2334666777788889999999999988764  4544

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=98.33  E-value=2.4e-05  Score=47.88  Aligned_cols=115  Identities=6%  Similarity=-0.057  Sum_probs=85.2

Q ss_pred             hhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHHhccccchhhHHHHHHHHHHhCcccchHHHHHHHHH
Q 036068           37 YVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDM  116 (178)
Q Consensus        37 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~  116 (178)
                      ...|..+...+...|++++|...|++..... +.+...+..+..++.+.|++++|...++...+....... .+..    
T Consensus         4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~-~~~~----   77 (131)
T 1elr_A            4 ALKEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENRE-DYRQ----   77 (131)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTT-CHHH----
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccch-hHHH----
Confidence            3567778888999999999999999988764 346778888889999999999999999888775432100 0000    


Q ss_pred             HHhcCChhhhccchhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhHHHHH
Q 036068          117 YCICADVEKAQKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGV  171 (178)
Q Consensus       117 ~~~~~~~~~a~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~l  171 (178)
                                  ...+|..+...+.+.|++++|.+.|++..+.  .|+......+
T Consensus        78 ------------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l  118 (131)
T 1elr_A           78 ------------IAKAYARIGNSYFKEEKYKDAIHFYNKSLAE--HRTPDVLKKC  118 (131)
T ss_dssp             ------------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHH
T ss_pred             ------------HHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCHHHHHHH
Confidence                        1345667778888999999999999998875  4565544443

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=98.33  E-value=7.3e-06  Score=52.10  Aligned_cols=135  Identities=10%  Similarity=0.008  Sum_probs=96.3

Q ss_pred             hhHHHHHHHHHHhcCChhHHHHHhccCCC-----CC----hhHHHHHHHHHhhcCChhHHHHHHHHhHhC----CCCC-c
Q 036068            6 VISWTAIVSRYINRGQVDIARQCFDQMPE-----RD----YVLWTAMIDGYLRVNRFREALTLFQEMQTS----NIMG-D   71 (178)
Q Consensus         6 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~-----~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----~~~~-~   71 (178)
                      ..++..+...+...|++++|...+++..+     ++    ...+..+-..+...|++++|.+.+++..+.    +-.+ .
T Consensus         9 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~   88 (164)
T 3ro3_A            9 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVE   88 (164)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHH
Confidence            34678888889999999999999987653     11    246777888888999999999999886543    1111 1


Q ss_pred             HHHHHHHHHHhccccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHhcCChhhhccchhhHHHHHHHHHhcCChhHHHH
Q 036068           72 EFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQKDKFSWTTMIVGLAISGNGDKALD  151 (178)
Q Consensus        72 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~li~~~~~~~~~~~a~~  151 (178)
                      ...+..+..++...|++++|.+.++...+.........                  .....+..+...+...|++++|.+
T Consensus        89 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~------------------~~~~~~~~la~~~~~~g~~~~A~~  150 (164)
T 3ro3_A           89 AQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRI------------------GEGRACWSLGNAYTALGNHDQAMH  150 (164)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH------------------HHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchH------------------hHHHHHHHHHHHHHHccCHHHHHH
Confidence            45677777888899999999998877664321111000                  113346677788888999999999


Q ss_pred             HHHHHHH
Q 036068          152 MFSQMLR  158 (178)
Q Consensus       152 ~~~~m~~  158 (178)
                      .+++..+
T Consensus       151 ~~~~a~~  157 (164)
T 3ro3_A          151 FAEKHLE  157 (164)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9988765

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=98.32  E-value=8.1e-06  Score=54.62  Aligned_cols=120  Identities=6%  Similarity=-0.006  Sum_probs=97.4

Q ss_pred             hhHHHHHHHHHHhcCChhHHHHHhccCCC---CCh----------------hHHHHHHHHHhhcCChhHHHHHHHHhHhC
Q 036068            6 VISWTAIVSRYINRGQVDIARQCFDQMPE---RDY----------------VLWTAMIDGYLRVNRFREALTLFQEMQTS   66 (178)
Q Consensus         6 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~---~~~----------------~~~~~li~~~~~~~~~~~a~~~~~~m~~~   66 (178)
                      ...+..+-..+.+.|++++|...|++..+   .+.                ..|..+-..|.+.|++++|...+++..+.
T Consensus        38 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~  117 (198)
T 2fbn_A           38 AFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKI  117 (198)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence            34577788899999999999999997643   232                78888889999999999999999998886


Q ss_pred             CCCCcHHHHHHHHHHhccccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHhcCChhhhc
Q 036068           67 NIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ  127 (178)
Q Consensus        67 ~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~  127 (178)
                      . +.+...+..+..++...|++++|...++...+.... +...+..+...+.+.++.+++.
T Consensus       118 ~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~~~~~  176 (198)
T 2fbn_A          118 D-KNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPN-NLDIRNSYELCVNKLKEARKKD  176 (198)
T ss_dssp             S-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHC--
T ss_pred             C-cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHHHHHHHH
Confidence            4 346788888999999999999999999999887643 5677888888887777766654

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.31  E-value=8.1e-05  Score=46.66  Aligned_cols=103  Identities=11%  Similarity=0.035  Sum_probs=81.1

Q ss_pred             CChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCc----HHHHHHHHHHhccccchhhHHHHHHHHHHhCcccchHHH
Q 036068           35 RDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGD----EFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAG  110 (178)
Q Consensus        35 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~----~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~  110 (178)
                      .+...+..+...+.+.|++++|.+.|++..+..  |+    ...+..+..++.+.+++++|...++...+....      
T Consensus        26 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~------   97 (148)
T 2dba_A           26 SSVEQLRKEGNELFKCGDYGGALAAYTQALGLD--ATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGG------   97 (148)
T ss_dssp             CCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSC------
T ss_pred             HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHc--ccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCcc------
Confidence            367788888999999999999999999988764  55    678888888999999999999999988876432      


Q ss_pred             HHHHHHHHhcCChhhhccchhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCh
Q 036068          111 NALIDMYCICADVEKAQKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDE  165 (178)
Q Consensus       111 ~~ll~~~~~~~~~~~a~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~  165 (178)
                                        +...|..+...+...|++++|.+.|++..+.  .|+.
T Consensus        98 ------------------~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~--~p~~  132 (148)
T 2dba_A           98 ------------------DVKALYRRSQALEKLGRLDQAVLDLQRCVSL--EPKN  132 (148)
T ss_dssp             ------------------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CSSC
T ss_pred             ------------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCc
Confidence                              2234555666777788888888888888764  3543

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=98.30  E-value=2.5e-06  Score=52.79  Aligned_cols=94  Identities=6%  Similarity=-0.069  Sum_probs=75.7

Q ss_pred             HHHHHHHHHHhcCChhHHHHHhccCCC--C-ChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHHhcc
Q 036068            8 SWTAIVSRYINRGQVDIARQCFDQMPE--R-DYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARAN   84 (178)
Q Consensus         8 ~~~~li~~~~~~~~~~~a~~~~~~m~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~   84 (178)
                      .+..+...+.+.|++++|...|++..+  | +...|..+-..+...|++++|...|++..+.. +-+...+..+..++.+
T Consensus        19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~~~~~la~~~~~   97 (121)
T 1hxi_A           19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTN   97 (121)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence            455677788899999999999988753  3 77788888889999999999999999987764 2356778888888999


Q ss_pred             ccchhhHHHHHHHHHHhC
Q 036068           85 LRALDLGEWIKTYIDKNK  102 (178)
Q Consensus        85 ~~~~~~a~~~~~~m~~~~  102 (178)
                      .|++++|...++...+..
T Consensus        98 ~g~~~~A~~~~~~al~~~  115 (121)
T 1hxi_A           98 EHNANAALASLRAWLLSQ  115 (121)
T ss_dssp             HHHHHHHHHHHHHHHC--
T ss_pred             cCCHHHHHHHHHHHHHhC
Confidence            999999999998887654

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=98.28  E-value=0.00016  Score=52.07  Aligned_cols=152  Identities=6%  Similarity=-0.059  Sum_probs=120.0

Q ss_pred             chhHHHHHHHHH----Hhc---CChhHHHHHhccCCC---CChhHHHHHHHHHhhcCChh--HHHHHHHHhHhCCCCCcH
Q 036068            5 DVISWTAIVSRY----INR---GQVDIARQCFDQMPE---RDYVLWTAMIDGYLRVNRFR--EALTLFQEMQTSNIMGDE   72 (178)
Q Consensus         5 ~~~~~~~li~~~----~~~---~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~~~--~a~~~~~~m~~~~~~~~~   72 (178)
                      +..+|+.--..+    .+.   +++++++++++++.+   +|...|+.--..+.+.|.++  +++++++++.+.... |.
T Consensus       102 ~y~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~-N~  180 (306)
T 3dra_A          102 NYQIWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLK-NN  180 (306)
T ss_dssp             CCHHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTT-CH
T ss_pred             cHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCC-CH
Confidence            344455554444    444   789999999998864   58888888888888888888  999999999988743 77


Q ss_pred             HHHHHHHHHhccccc------hhhHHHHHHHHHHhCcccchHHHHHHHHHHHhcCChhhhc---------------cchh
Q 036068           73 FTIVSILTARANLRA------LDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ---------------KDKF  131 (178)
Q Consensus        73 ~~~~~ll~~~~~~~~------~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~---------------~~~~  131 (178)
                      ..|+---..+.+.+.      ++++.+.++.++...+ -+...|+-+-..+.+.|+...+.               .+..
T Consensus       181 sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p-~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~  259 (306)
T 3dra_A          181 SAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKCP-QNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSF  259 (306)
T ss_dssp             HHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHCS-SCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHH
T ss_pred             HHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhCC-CCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHH
Confidence            777766666666666      8889999999888875 47889999988888888754433               2567


Q ss_pred             hHHHHHHHHHhcCChhHHHHHHHHHHH
Q 036068          132 SWTTMIVGLAISGNGDKALDMFSQMLR  158 (178)
Q Consensus       132 ~~~~li~~~~~~~~~~~a~~~~~~m~~  158 (178)
                      .+..+...+.+.|+.++|.++++.+.+
T Consensus       260 al~~la~~~~~~~~~~~A~~~~~~l~~  286 (306)
T 3dra_A          260 ALETLAKIYTQQKKYNESRTVYDLLKS  286 (306)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHccCCHHHHHHHHHHHHh
Confidence            888899999999999999999999886

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=98.28  E-value=6.4e-05  Score=55.01  Aligned_cols=151  Identities=9%  Similarity=-0.027  Sum_probs=104.9

Q ss_pred             HHHHHHHHHHhcCChhHHHHHhccCCC----------C-ChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCC----CCcH
Q 036068            8 SWTAIVSRYINRGQVDIARQCFDQMPE----------R-DYVLWTAMIDGYLRVNRFREALTLFQEMQTSNI----MGDE   72 (178)
Q Consensus         8 ~~~~li~~~~~~~~~~~a~~~~~~m~~----------~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~----~~~~   72 (178)
                      ++..+...+...|++++|.+.+++..+          + ....+..+-..+...|++++|...+++.....-    ....
T Consensus        95 ~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  174 (373)
T 1hz4_A           95 SLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQL  174 (373)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHH
Confidence            356677788889999998888876542          1 223556677788899999999999988755321    1123


Q ss_pred             HHHHHHHHHhccccchhhHHHHHHHHHHhCcccc-hHHHH-----HHHHHHHhcCChhhhc----------cc-----hh
Q 036068           73 FTIVSILTARANLRALDLGEWIKTYIDKNKVKND-IFAGN-----ALIDMYCICADVEKAQ----------KD-----KF  131 (178)
Q Consensus        73 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~-----~ll~~~~~~~~~~~a~----------~~-----~~  131 (178)
                      .++..+...+...|++++|...++........++ ...+.     .....+...|+.++|.          +.     ..
T Consensus       175 ~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~  254 (373)
T 1hz4_A          175 QCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQG  254 (373)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHH
Confidence            5677788888899999999999988765422211 11122     2334477889988876          11     12


Q ss_pred             hHHHHHHHHHhcCChhHHHHHHHHHHH
Q 036068          132 SWTTMIVGLAISGNGDKALDMFSQMLR  158 (178)
Q Consensus       132 ~~~~li~~~~~~~~~~~a~~~~~~m~~  158 (178)
                      .+..+...+...|++++|.+.+++..+
T Consensus       255 ~~~~la~~~~~~g~~~~A~~~l~~a~~  281 (373)
T 1hz4_A          255 QWRNIARAQILLGEFEPAEIVLEELNE  281 (373)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            456677888889999999999988765

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=98.26  E-value=5.5e-05  Score=60.30  Aligned_cols=168  Identities=7%  Similarity=0.035  Sum_probs=109.8

Q ss_pred             cchhHHHHHHHHHHhcCChhHHHHHhccCCC-------------CC------------hhHHHHHHHHHhhcCChhHHHH
Q 036068            4 KDVISWTAIVSRYINRGQVDIARQCFDQMPE-------------RD------------YVLWTAMIDGYLRVNRFREALT   58 (178)
Q Consensus         4 p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~-------------~~------------~~~~~~li~~~~~~~~~~~a~~   58 (178)
                      ++...|-..+...-+.|+++.|.++|++..+             |+            ...|...+....+.|+.+.|.+
T Consensus       376 ~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~  455 (679)
T 4e6h_A          376 NSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRK  455 (679)
T ss_dssp             TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHH
Confidence            3455566677777788888888888887653             21            2356667777777778888888


Q ss_pred             HHHHhHhC-C-CCCcHHHHHHHHHHhccccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHhcCChhhhc---------
Q 036068           59 LFQEMQTS-N-IMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ---------  127 (178)
Q Consensus        59 ~~~~m~~~-~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~---------  127 (178)
                      +|.+..+. + ..+......+.+.-.+ .++.+.|..+|+...+. .+.++..|...+......|+.+.|.         
T Consensus       456 vf~~A~~~~~~~~~~lyi~~A~lE~~~-~~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~  533 (679)
T 4e6h_A          456 IFGKCRRLKKLVTPDIYLENAYIEYHI-SKDTKTACKVLELGLKY-FATDGEYINKYLDFLIYVNEESQVKSLFESSIDK  533 (679)
T ss_dssp             HHHHHHHTGGGSCTHHHHHHHHHHHTT-TSCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTT
T ss_pred             HHHHHHHhcCCCChHHHHHHHHHHHHh-CCCHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHh
Confidence            88887665 2 1222223223333222 34578888888877776 3345666777777777777777665         


Q ss_pred             -c----chhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhHHHHHHhhh
Q 036068          128 -K----DKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC  175 (178)
Q Consensus       128 -~----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~a~  175 (178)
                       +    ....|...+.--.+.|+.+.+..+.+++.+.  .|+......+++=|
T Consensus       534 ~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~--~P~~~~~~~f~~ry  584 (679)
T 4e6h_A          534 ISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEK--FPEVNKLEEFTNKY  584 (679)
T ss_dssp             SSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHH--STTCCHHHHHHHHT
T ss_pred             cCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCcHHHHHHHHh
Confidence             2    3456777777777888888888888888875  46666655555433

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=98.24  E-value=6.6e-06  Score=51.28  Aligned_cols=105  Identities=11%  Similarity=0.059  Sum_probs=83.0

Q ss_pred             hhHHHHHHHHHHhcCChhHHHHHhccCCC---CChhHHHHHHHHHhhcCChhHHHHHHHHhHhCC--CCCc----HHHHH
Q 036068            6 VISWTAIVSRYINRGQVDIARQCFDQMPE---RDYVLWTAMIDGYLRVNRFREALTLFQEMQTSN--IMGD----EFTIV   76 (178)
Q Consensus         6 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~--~~~~----~~~~~   76 (178)
                      ...+..+-..+.+.|++++|++.|++..+   .+...|..+-.+|.+.|++++|++.+++..+..  ..++    ..+|.
T Consensus         8 A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~   87 (127)
T 4gcn_A            8 AIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMS   87 (127)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHH
Confidence            34677889999999999999999998653   478889999999999999999999999976532  1111    24677


Q ss_pred             HHHHHhccccchhhHHHHHHHHHHhCcccchHHHHH
Q 036068           77 SILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNA  112 (178)
Q Consensus        77 ~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~  112 (178)
                      .+-.++...|++++|.+.|+...+..  |++.+...
T Consensus        88 ~lg~~~~~~~~~~~A~~~~~kal~~~--~~~~~~~~  121 (127)
T 4gcn_A           88 RAGNAFQKQNDLSLAVQWFHRSLSEF--RDPELVKK  121 (127)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHS--CCHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhhC--cCHHHHHH
Confidence            77888899999999999999887754  45554443

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=98.21  E-value=1.9e-05  Score=51.71  Aligned_cols=100  Identities=6%  Similarity=0.092  Sum_probs=84.9

Q ss_pred             cchhHHHHHHHHHHhcCChhHHHHHhccCCC---CChhHHHHHHHH-HhhcCCh--hHHHHHHHHhHhCCCCCcHHHHHH
Q 036068            4 KDVISWTAIVSRYINRGQVDIARQCFDQMPE---RDYVLWTAMIDG-YLRVNRF--REALTLFQEMQTSNIMGDEFTIVS   77 (178)
Q Consensus         4 p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~-~~~~~~~--~~a~~~~~~m~~~~~~~~~~~~~~   77 (178)
                      .+...|..+...+...|++++|...|++..+   .+...+..+... +...|++  ++|...|++..+.. +-+...+..
T Consensus        42 ~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~  120 (177)
T 2e2e_A           42 QNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQTRAMIDKALALD-SNEITALML  120 (177)
T ss_dssp             SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred             CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhC-CCcHHHHHH
Confidence            4667899999999999999999999998763   367777778888 7789998  99999999998875 335678888


Q ss_pred             HHHHhccccchhhHHHHHHHHHHhCcc
Q 036068           78 ILTARANLRALDLGEWIKTYIDKNKVK  104 (178)
Q Consensus        78 ll~~~~~~~~~~~a~~~~~~m~~~~~~  104 (178)
                      +..++.+.|++++|...++...+....
T Consensus       121 la~~~~~~g~~~~A~~~~~~al~~~p~  147 (177)
T 2e2e_A          121 LASDAFMQANYAQAIELWQKVMDLNSP  147 (177)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHTCCT
T ss_pred             HHHHHHHcccHHHHHHHHHHHHhhCCC
Confidence            899999999999999999999887543

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=98.19  E-value=2.3e-05  Score=59.88  Aligned_cols=117  Identities=14%  Similarity=0.011  Sum_probs=92.2

Q ss_pred             HHHHHHHHHhcCChhHHHHHhccCCC---CChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHHhccc
Q 036068            9 WTAIVSRYINRGQVDIARQCFDQMPE---RDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANL   85 (178)
Q Consensus         9 ~~~li~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~   85 (178)
                      |..+...+.+.|++++|.+.|++..+   .+...|..+-.+|.+.|++++|.+.+++..+.. +-+...+..+-.++.+.
T Consensus         9 ~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~   87 (477)
T 1wao_1            9 LKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMAL   87 (477)
T ss_dssp             SSSSSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHc
Confidence            34445566789999999999997653   368889999999999999999999999998875 33577888899999999


Q ss_pred             cchhhHHHHHHHHHHhCcccchHHHHHHHHH--HHhcCChhhhc
Q 036068           86 RALDLGEWIKTYIDKNKVKNDIFAGNALIDM--YCICADVEKAQ  127 (178)
Q Consensus        86 ~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~--~~~~~~~~~a~  127 (178)
                      |++++|.+.++...+.... +...+..+-.+  +.+.|++++|.
T Consensus        88 g~~~eA~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~g~~~~A~  130 (477)
T 1wao_1           88 GKFRAALRDYETVVKVKPH-DKDAKMKYQECNKIVKQKAFERAI  130 (477)
T ss_dssp             TCHHHHHHHHHHHHHHSTT-CTTHHHHHHHHHHHHHHHHHCCC-
T ss_pred             CCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHh
Confidence            9999999999998887643 34455555444  77777777775

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=98.19  E-value=0.00015  Score=53.06  Aligned_cols=151  Identities=11%  Similarity=0.011  Sum_probs=109.2

Q ss_pred             HHHHHHHHHhcCChhHHHHHhccCC----CCChh----HHHHHHHHHhhcCChhHHHHHHHHhHhC----CCC-CcHHHH
Q 036068            9 WTAIVSRYINRGQVDIARQCFDQMP----ERDYV----LWTAMIDGYLRVNRFREALTLFQEMQTS----NIM-GDEFTI   75 (178)
Q Consensus         9 ~~~li~~~~~~~~~~~a~~~~~~m~----~~~~~----~~~~li~~~~~~~~~~~a~~~~~~m~~~----~~~-~~~~~~   75 (178)
                      +......+...|++++|...+++..    ..+..    .++.+-..+...|++++|.+.+++....    |.. ....++
T Consensus        17 ~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~   96 (373)
T 1hz4_A           17 NALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSL   96 (373)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence            3444556778999999999987642    22222    4566667888899999999999987542    211 012345


Q ss_pred             HHHHHHhccccchhhHHHHHHHHHHhC----cc--c-chHHHHHHHHHHHhcCChhhhc----------c------chhh
Q 036068           76 VSILTARANLRALDLGEWIKTYIDKNK----VK--N-DIFAGNALIDMYCICADVEKAQ----------K------DKFS  132 (178)
Q Consensus        76 ~~ll~~~~~~~~~~~a~~~~~~m~~~~----~~--~-~~~~~~~ll~~~~~~~~~~~a~----------~------~~~~  132 (178)
                      ..+-..+...|++++|...++...+..    ..  | ....+..+-..+...|++++|.          +      ...+
T Consensus        97 ~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~  176 (373)
T 1hz4_A           97 IQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQC  176 (373)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHH
Confidence            667778889999999999998776532    21  2 2445667778899999999987          1      1245


Q ss_pred             HHHHHHHHHhcCChhHHHHHHHHHHHc
Q 036068          133 WTTMIVGLAISGNGDKALDMFSQMLRA  159 (178)
Q Consensus       133 ~~~li~~~~~~~~~~~a~~~~~~m~~~  159 (178)
                      +..+...+...|++++|...+++..+.
T Consensus       177 ~~~la~~~~~~g~~~~A~~~l~~a~~~  203 (373)
T 1hz4_A          177 LAMLIQCSLARGDLDNARSQLNRLENL  203 (373)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            777888899999999999999998764

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=98.19  E-value=0.00014  Score=51.64  Aligned_cols=133  Identities=12%  Similarity=0.036  Sum_probs=96.6

Q ss_pred             HHHHHHHHHhcCChhHHHHHhccCCC--CChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCc--HHHHHHHHHHhcc
Q 036068            9 WTAIVSRYINRGQVDIARQCFDQMPE--RDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGD--EFTIVSILTARAN   84 (178)
Q Consensus         9 ~~~li~~~~~~~~~~~a~~~~~~m~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~--~~~~~~ll~~~~~   84 (178)
                      +-.....+...|++++|.++|+.+..  |+....-.+-..+.+.+++++|...|+...... .|.  ...+..+-.++.+
T Consensus       105 ~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~a~~~LG~al~~  183 (282)
T 4f3v_A          105 TMGFAACEAAQGNYADAMEALEAAPVAGSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGAAGVAHGVAAAN  183 (282)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHHHHHHHHHHHHH
Confidence            34567788899999999999999874  433344455568889999999999998654432 121  3467778888999


Q ss_pred             ccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHhcCChhhhccchhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC
Q 036068           85 LRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPD  164 (178)
Q Consensus        85 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~  164 (178)
                      .|++++|...|++.......|...                     .......-.++.+.|+.++|..+|+++...  .|+
T Consensus       184 LG~~~eAl~~l~~a~~g~~~P~~~---------------------~da~~~~glaL~~lGr~deA~~~l~~a~a~--~P~  240 (282)
T 4f3v_A          184 LALFTEAERRLTEANDSPAGEACA---------------------RAIAWYLAMARRSQGNESAAVALLEWLQTT--HPE  240 (282)
T ss_dssp             TTCHHHHHHHHHHHHTSTTTTTTH---------------------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--SCC
T ss_pred             CCCHHHHHHHHHHHhcCCCCcccc---------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCc
Confidence            999999999999887543324321                     112344556677889999999999999875  466


Q ss_pred             h
Q 036068          165 E  165 (178)
Q Consensus       165 ~  165 (178)
                      .
T Consensus       241 ~  241 (282)
T 4f3v_A          241 P  241 (282)
T ss_dssp             H
T ss_pred             H
Confidence            3

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=98.17  E-value=6.2e-06  Score=50.45  Aligned_cols=85  Identities=8%  Similarity=-0.006  Sum_probs=47.1

Q ss_pred             cCChhHHHHHHHHhHhCC--CCCcHHHHHHHHHHhccccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHhcCChhhhc
Q 036068           50 VNRFREALTLFQEMQTSN--IMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ  127 (178)
Q Consensus        50 ~~~~~~a~~~~~~m~~~~--~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~  127 (178)
                      .|++++|...|++..+.+  -+-+...+..+..++.+.|++++|...++...+..+..                      
T Consensus         3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~----------------------   60 (117)
T 3k9i_A            3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNH----------------------   60 (117)
T ss_dssp             ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----------------------
T ss_pred             CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc----------------------
Confidence            456667777777766643  12234556666666777777777777777666654321                      


Q ss_pred             cchhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 036068          128 KDKFSWTTMIVGLAISGNGDKALDMFSQMLR  158 (178)
Q Consensus       128 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~  158 (178)
                        ...+..+...+.+.|++++|.+.+++..+
T Consensus        61 --~~~~~~l~~~~~~~g~~~~A~~~~~~al~   89 (117)
T 3k9i_A           61 --QALRVFYAMVLYNLGRYEQGVELLLKIIA   89 (117)
T ss_dssp             --HHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             --hHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence              22334445555555666666666665554

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=98.16  E-value=2.1e-05  Score=48.46  Aligned_cols=93  Identities=11%  Similarity=0.029  Sum_probs=74.8

Q ss_pred             HHHHHHHHHhcCChhHHHHHhccCCC--C-Ch---hHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCc----HHHHHHH
Q 036068            9 WTAIVSRYINRGQVDIARQCFDQMPE--R-DY---VLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGD----EFTIVSI   78 (178)
Q Consensus         9 ~~~li~~~~~~~~~~~a~~~~~~m~~--~-~~---~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~----~~~~~~l   78 (178)
                      +..+...+.+.|++++|.+.|++..+  | +.   ..+..+-..+.+.|++++|...|++..+..  |+    ...+..+
T Consensus         5 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~~~~l   82 (129)
T 2xev_A            5 AYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY--PTHDKAAGGLLKL   82 (129)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTSTTHHHHHHHH
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC--CCCcccHHHHHHH
Confidence            34467788899999999999998753  3 33   467778888999999999999999987764  33    5667778


Q ss_pred             HHHhccccchhhHHHHHHHHHHhCc
Q 036068           79 LTARANLRALDLGEWIKTYIDKNKV  103 (178)
Q Consensus        79 l~~~~~~~~~~~a~~~~~~m~~~~~  103 (178)
                      ..++.+.|++++|...++.+.+..+
T Consensus        83 a~~~~~~g~~~~A~~~~~~~~~~~p  107 (129)
T 2xev_A           83 GLSQYGEGKNTEAQQTLQQVATQYP  107 (129)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHCC
Confidence            8889999999999999999888753

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=98.13  E-value=5.2e-05  Score=56.48  Aligned_cols=146  Identities=9%  Similarity=-0.091  Sum_probs=108.1

Q ss_pred             HHHHHhcCChhHHHHHhccCCCC--------------------ChhHHHHHHHHHhhcCChhHHHHHHHHhHhC-CCCCc
Q 036068           13 VSRYINRGQVDIARQCFDQMPER--------------------DYVLWTAMIDGYLRVNRFREALTLFQEMQTS-NIMGD   71 (178)
Q Consensus        13 i~~~~~~~~~~~a~~~~~~m~~~--------------------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-~~~~~   71 (178)
                      .+.+.+.|++++|.+.|.+..+.                    ....+..|...|.+.|++++|.+.+.+.... +..++
T Consensus        11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~   90 (434)
T 4b4t_Q           11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAK   90 (434)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccc
Confidence            56678899999999999876421                    1124777899999999999999999987542 11122


Q ss_pred             H----HHHHHHHHHhccccchhhHHHHHHHHHHh----Cccc-chHHHHHHHHHHHhcCChhhhc---------------
Q 036068           72 E----FTIVSILTARANLRALDLGEWIKTYIDKN----KVKN-DIFAGNALIDMYCICADVEKAQ---------------  127 (178)
Q Consensus        72 ~----~~~~~ll~~~~~~~~~~~a~~~~~~m~~~----~~~~-~~~~~~~ll~~~~~~~~~~~a~---------------  127 (178)
                      .    .+.+.+-..+...|+++++.+++......    +..+ -..++..+...|...|++++|.               
T Consensus        91 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~  170 (434)
T 4b4t_Q           91 SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDD  170 (434)
T ss_dssp             HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSC
T ss_pred             hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhccc
Confidence            2    22333334456778899999998776542    2222 2567788899999999999997               


Q ss_pred             --cchhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 036068          128 --KDKFSWTTMIVGLAISGNGDKALDMFSQMLR  158 (178)
Q Consensus       128 --~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~  158 (178)
                        .....+..++..|...|++++|..++++.+.
T Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~  203 (434)
T 4b4t_Q          171 KPSLVDVHLLESKVYHKLRNLAKSKASLTAART  203 (434)
T ss_dssp             STHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence              1355788899999999999999999998875

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=98.13  E-value=3.6e-05  Score=47.46  Aligned_cols=96  Identities=16%  Similarity=0.000  Sum_probs=75.0

Q ss_pred             HHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHHhccccchhhHHHHHHHHHHhCcccchHHHHHHHHHHH
Q 036068           39 LWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYC  118 (178)
Q Consensus        39 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~  118 (178)
                      .+-.+-..+.+.|++++|...|++..+.. +-+...|..+-.++.+.|++++|...++...+..+.              
T Consensus        19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~--------------   83 (121)
T 1hxi_A           19 NPMEEGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK--------------   83 (121)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--------------
T ss_pred             hHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--------------
Confidence            45556677888999999999999988764 336778888888899999999999999988887543              


Q ss_pred             hcCChhhhccchhhHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 036068          119 ICADVEKAQKDKFSWTTMIVGLAISGNGDKALDMFSQMLRA  159 (178)
Q Consensus       119 ~~~~~~~a~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~  159 (178)
                                +...+..+...+.+.|++++|...|++.++.
T Consensus        84 ----------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  114 (121)
T 1hxi_A           84 ----------DIAVHAALAVSHTNEHNANAALASLRAWLLS  114 (121)
T ss_dssp             ----------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred             ----------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence                      2334566777778888888999999888753

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=98.12  E-value=2.7e-05  Score=50.27  Aligned_cols=97  Identities=18%  Similarity=0.137  Sum_probs=79.2

Q ss_pred             hhHHHHHHHHHHhcCChhHHHHHhccCCCC---------------------ChhHHHHHHHHHhhcCChhHHHHHHHHhH
Q 036068            6 VISWTAIVSRYINRGQVDIARQCFDQMPER---------------------DYVLWTAMIDGYLRVNRFREALTLFQEMQ   64 (178)
Q Consensus         6 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~---------------------~~~~~~~li~~~~~~~~~~~a~~~~~~m~   64 (178)
                      +..+...-..+.+.|++++|...|.+..+-                     +...|..+-.+|.+.|++++|...+++..
T Consensus        11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al   90 (162)
T 3rkv_A           11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL   90 (162)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence            445777888899999999999998875421                     33577888889999999999999999988


Q ss_pred             hCCCCCcHHHHHHHHHHhccccchhhHHHHHHHHHHhCc
Q 036068           65 TSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKV  103 (178)
Q Consensus        65 ~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~  103 (178)
                      +.. +.+...|..+-.++...|++++|...++...+..+
T Consensus        91 ~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p  128 (162)
T 3rkv_A           91 KRE-ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHP  128 (162)
T ss_dssp             HHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCG
T ss_pred             hcC-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCC
Confidence            765 34577888899999999999999999998888754

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=98.11  E-value=0.00023  Score=50.48  Aligned_cols=122  Identities=7%  Similarity=-0.003  Sum_probs=92.6

Q ss_pred             hHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCc-H----HHHHHHHHHhccccchhhHHHHHHHHHHhCc---ccc--h
Q 036068           38 VLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGD-E----FTIVSILTARANLRALDLGEWIKTYIDKNKV---KND--I  107 (178)
Q Consensus        38 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~-~----~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~---~~~--~  107 (178)
                      ..+...+..+...|++++|.+.+++..+...... .    ..+..+...+...|++++|...++...+...   .+.  .
T Consensus        76 ~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~  155 (293)
T 2qfc_A           76 KQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNL  155 (293)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHH
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHH
Confidence            3455677888999999999999988776532211 1    2234455667888999999999988775321   111  4


Q ss_pred             HHHHHHHHHHHhcCChhhhc-------------cc-----hhhHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 036068          108 FAGNALIDMYCICADVEKAQ-------------KD-----KFSWTTMIVGLAISGNGDKALDMFSQMLRA  159 (178)
Q Consensus       108 ~~~~~ll~~~~~~~~~~~a~-------------~~-----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~  159 (178)
                      .+++.+-..|...|++++|.             ++     ..+++.+...|.+.|++++|.+.+++.++.
T Consensus       156 ~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~  225 (293)
T 2qfc_A          156 YIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEI  225 (293)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHH
Confidence            58889999999999999987             22     258889999999999999999999998753

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=98.11  E-value=2.7e-05  Score=57.61  Aligned_cols=118  Identities=8%  Similarity=-0.004  Sum_probs=91.6

Q ss_pred             hHHHHHHHHHHhcCChhHHHHHhccCCC-------------------CChhHHHHHHHHHhhcCChhHHHHHHHHhHhCC
Q 036068            7 ISWTAIVSRYINRGQVDIARQCFDQMPE-------------------RDYVLWTAMIDGYLRVNRFREALTLFQEMQTSN   67 (178)
Q Consensus         7 ~~~~~li~~~~~~~~~~~a~~~~~~m~~-------------------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~   67 (178)
                      ..|..+-..+.+.|++++|.+.|++..+                   .+...|..+-..|.+.|++++|.+.+++..+..
T Consensus       224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~  303 (370)
T 1ihg_A          224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEID  303 (370)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhC
Confidence            3477788889999999999999987653                   245678888889999999999999999988764


Q ss_pred             CCCcHHHHHHHHHHhccccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHhcCChhhh
Q 036068           68 IMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKA  126 (178)
Q Consensus        68 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a  126 (178)
                       +-+...+..+-.++.+.|++++|...++...+.... +...+..+-..+.+.++.+++
T Consensus       304 -p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~-~~~~~~~l~~~~~~~~~~~~a  360 (370)
T 1ihg_A          304 -PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPE-DKAIQAELLKVKQKIKAQKDK  360 (370)
T ss_dssp             -TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHH
T ss_pred             -chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHH
Confidence             235778888888999999999999999988887533 455666666666655555543

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=98.09  E-value=2e-05  Score=59.91  Aligned_cols=119  Identities=8%  Similarity=0.015  Sum_probs=82.9

Q ss_pred             hhHHHHHHHHHHhcCChhHHHHHhccCCC--C-C---------------hhHHHHHHHHHhhcCChhHHHHHHHHhHhCC
Q 036068            6 VISWTAIVSRYINRGQVDIARQCFDQMPE--R-D---------------YVLWTAMIDGYLRVNRFREALTLFQEMQTSN   67 (178)
Q Consensus         6 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~--~-~---------------~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~   67 (178)
                      ...|..+-..+.+.|++++|...|++..+  | +               ...|..+-.+|.+.|++++|...+++..+..
T Consensus       268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~  347 (457)
T 1kt0_A          268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD  347 (457)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence            34566777788888888888888886643  2 2               4677777778888888888888888877764


Q ss_pred             CCCcHHHHHHHHHHhccccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHhcCChhhh
Q 036068           68 IMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKA  126 (178)
Q Consensus        68 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a  126 (178)
                       +-+...|..+-.++.+.|++++|...|+...+..+. +...+..+-..+.+.++.+++
T Consensus       348 -p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~-~~~a~~~l~~~~~~~~~~~~a  404 (457)
T 1kt0_A          348 -SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQ-NKAARLQISMCQKKAKEHNER  404 (457)
T ss_dssp             -TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHHHH
T ss_pred             -CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHH
Confidence             335677777778888888888888888877766432 345566666666666666554

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=98.09  E-value=0.00061  Score=46.05  Aligned_cols=118  Identities=11%  Similarity=0.016  Sum_probs=97.4

Q ss_pred             CChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHHhcccc----chhhHHHHHHHHHHhCcccchHHH
Q 036068           35 RDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANLR----ALDLGEWIKTYIDKNKVKNDIFAG  110 (178)
Q Consensus        35 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~----~~~~a~~~~~~m~~~~~~~~~~~~  110 (178)
                      .+...+..|-..|...+++++|.+.|++..+.|   +...+..+-..|.. +    ++++|.++|+...+.|   ++..+
T Consensus        16 g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~g---~~~a~   88 (212)
T 3rjv_A           16 GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAVEAG---SKSGE   88 (212)
T ss_dssp             TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHTT---CHHHH
T ss_pred             CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHCC---CHHHH
Confidence            477888888889999999999999999998876   55667777777877 6    8999999999998765   45566


Q ss_pred             HHHHHHHHh----cCChhhhc---------cc----hhhHHHHHHHHHh----cCChhHHHHHHHHHHHc
Q 036068          111 NALIDMYCI----CADVEKAQ---------KD----KFSWTTMIVGLAI----SGNGDKALDMFSQMLRA  159 (178)
Q Consensus       111 ~~ll~~~~~----~~~~~~a~---------~~----~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~  159 (178)
                      ..|-..|..    .+++++|.         .+    ...+..|-..|..    .+++++|+..|++..+.
T Consensus        89 ~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~  158 (212)
T 3rjv_A           89 IVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL  158 (212)
T ss_dssp             HHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc
Confidence            677677766    77888877         23    6888889899988    88999999999999886

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=98.08  E-value=0.00025  Score=43.47  Aligned_cols=101  Identities=12%  Similarity=0.028  Sum_probs=73.0

Q ss_pred             HHHHHHhhcCChhHHHHHHHHhHhCCCCCcH---HHHHHHHHHhccccchhhHHHHHHHHHHhCcccchHHHHHHHHHHH
Q 036068           42 AMIDGYLRVNRFREALTLFQEMQTSNIMGDE---FTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYC  118 (178)
Q Consensus        42 ~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~---~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~  118 (178)
                      .+-..+.+.|++++|.+.|++..+..- .+.   ..+..+..++.+.|++++|...++...+..+....           
T Consensus         7 ~~a~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~-----------   74 (129)
T 2xev_A            7 NVAFDALKNGKYDDASQLFLSFLELYP-NGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDK-----------   74 (129)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCS-SSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTT-----------
T ss_pred             HHHHHHHHhCCHHHHHHHHHHHHHHCC-CCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcc-----------
Confidence            455677889999999999999887542 122   47777888899999999999999998887543210           


Q ss_pred             hcCChhhhccchhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChh
Q 036068          119 ICADVEKAQKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEV  166 (178)
Q Consensus       119 ~~~~~~~a~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~  166 (178)
                                ....+..+...+.+.|++++|...|++..+.  .|+..
T Consensus        75 ----------~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~p~~~  110 (129)
T 2xev_A           75 ----------AAGGLLKLGLSQYGEGKNTEAQQTLQQVATQ--YPGSD  110 (129)
T ss_dssp             ----------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTSH
T ss_pred             ----------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCh
Confidence                      0223445566677788888888888888764  35543

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=98.06  E-value=0.00038  Score=47.43  Aligned_cols=127  Identities=12%  Similarity=0.025  Sum_probs=89.7

Q ss_pred             hhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCC-C-cHHHHHHHHHHhccccchhhHHHHHHHHHHhCcccch--HHHHH
Q 036068           37 YVLWTAMIDGYLRVNRFREALTLFQEMQTSNIM-G-DEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDI--FAGNA  112 (178)
Q Consensus        37 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~-~-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~--~~~~~  112 (178)
                      ...+-.+...+.+.|++++|...|+++.+..-. | ....+..+..++.+.|++++|...++.+.+..+....  ..+-.
T Consensus         4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~   83 (225)
T 2yhc_A            4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYM   83 (225)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHH
Confidence            344555667788999999999999999875321 1 2357778889999999999999999999987654322  23443


Q ss_pred             HHHHHHh------------------cCChhhhc----------cc-hhhH-----------------HHHHHHHHhcCCh
Q 036068          113 LIDMYCI------------------CADVEKAQ----------KD-KFSW-----------------TTMIVGLAISGNG  146 (178)
Q Consensus       113 ll~~~~~------------------~~~~~~a~----------~~-~~~~-----------------~~li~~~~~~~~~  146 (178)
                      +-..+.+                  .|+.++|.          |+ ...+                 -.+...+.+.|++
T Consensus        84 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~~  163 (225)
T 2yhc_A           84 RGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGAW  163 (225)
T ss_dssp             HHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCH
T ss_pred             HHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcH
Confidence            4444443                  45677775          33 2222                 2345677889999


Q ss_pred             hHHHHHHHHHHHcCCCCCh
Q 036068          147 DKALDMFSQMLRASIKPDE  165 (178)
Q Consensus       147 ~~a~~~~~~m~~~g~~p~~  165 (178)
                      ++|...|+++++.  .|+.
T Consensus       164 ~~A~~~~~~~l~~--~p~~  180 (225)
T 2yhc_A          164 VAVVNRVEGMLRD--YPDT  180 (225)
T ss_dssp             HHHHHHHHHHHHH--STTS
T ss_pred             HHHHHHHHHHHHH--CcCC
Confidence            9999999999975  4554

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=98.00  E-value=3.3e-05  Score=48.95  Aligned_cols=90  Identities=12%  Similarity=0.039  Sum_probs=51.6

Q ss_pred             hHHHHHHHHHhhcCChhHHHHHHHHhHhCCC---CC--cHHHHHHHHHHhccccchhhHHHHHHHHHHhCc----cc-ch
Q 036068           38 VLWTAMIDGYLRVNRFREALTLFQEMQTSNI---MG--DEFTIVSILTARANLRALDLGEWIKTYIDKNKV----KN-DI  107 (178)
Q Consensus        38 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~---~~--~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~----~~-~~  107 (178)
                      .++..+-..+...|++++|...+++..+..-   .+  ...++..+...+...|++++|...++...+...    .+ ..
T Consensus        10 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~   89 (164)
T 3ro3_A           10 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEA   89 (164)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHH
Confidence            3555666666677777777777766543210   00  113556666666777777777777765543211    11 13


Q ss_pred             HHHHHHHHHHHhcCChhhhc
Q 036068          108 FAGNALIDMYCICADVEKAQ  127 (178)
Q Consensus       108 ~~~~~ll~~~~~~~~~~~a~  127 (178)
                      ..+..+-..+...|++++|.
T Consensus        90 ~~~~~l~~~~~~~~~~~~A~  109 (164)
T 3ro3_A           90 QSCYSLGNTYTLLQDYEKAI  109 (164)
T ss_dssp             HHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHHhhHHHHH
Confidence            45556666667777777665

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=98.00  E-value=8.8e-05  Score=53.17  Aligned_cols=119  Identities=8%  Similarity=-0.078  Sum_probs=92.8

Q ss_pred             HHHHHHHHHhhcCChhHHHHHHHHhHhC----CCCC-cHHHHHHHHHHhccccchhhHHHHHHHHHHh----Ccc-cchH
Q 036068           39 LWTAMIDGYLRVNRFREALTLFQEMQTS----NIMG-DEFTIVSILTARANLRALDLGEWIKTYIDKN----KVK-NDIF  108 (178)
Q Consensus        39 ~~~~li~~~~~~~~~~~a~~~~~~m~~~----~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~----~~~-~~~~  108 (178)
                      .|+.....|...|++++|...|.+..+.    +-.+ -..+|+.+..+|.+.|++++|...++...+.    |-. ....
T Consensus        38 ~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~  117 (307)
T 2ifu_A           38 EYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAM  117 (307)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence            5666778888999999999999886543    2111 1457888889999999999999999876653    211 1246


Q ss_pred             HHHHHHHHHHhcCChhhhc----------c-------chhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 036068          109 AGNALIDMYCICADVEKAQ----------K-------DKFSWTTMIVGLAISGNGDKALDMFSQMLR  158 (178)
Q Consensus       109 ~~~~ll~~~~~~~~~~~a~----------~-------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~  158 (178)
                      +++.+-..|.. |++++|.          +       ...+++.+...+.+.|++++|.+.|++..+
T Consensus       118 ~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~  183 (307)
T 2ifu_A          118 ALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKS  183 (307)
T ss_dssp             HHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            77788888888 9999987          1       146788889999999999999999999886

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=98.00  E-value=5.1e-05  Score=58.20  Aligned_cols=112  Identities=10%  Similarity=-0.108  Sum_probs=61.4

Q ss_pred             hhcCChhHHHHHHHHhHhC---CCCC----cHHHHHHHHHHhccccchhhHHHHHHHHHHh-----Cc-cc-chHHHHHH
Q 036068           48 LRVNRFREALTLFQEMQTS---NIMG----DEFTIVSILTARANLRALDLGEWIKTYIDKN-----KV-KN-DIFAGNAL  113 (178)
Q Consensus        48 ~~~~~~~~a~~~~~~m~~~---~~~~----~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~-----~~-~~-~~~~~~~l  113 (178)
                      ...|++++|..++++.++.   -+.|    ...+++.+..+|...|++++|+.++++..+.     |. .| ...+++.|
T Consensus       320 ~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nL  399 (490)
T 3n71_A          320 RSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRA  399 (490)
T ss_dssp             HTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHH
T ss_pred             HhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence            3455555555555554321   1111    1345555555555556665555555544321     11 11 23345555


Q ss_pred             HHHHHhcCChhhhc------------------c-chhhHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 036068          114 IDMYCICADVEKAQ------------------K-DKFSWTTMIVGLAISGNGDKALDMFSQMLRA  159 (178)
Q Consensus       114 l~~~~~~~~~~~a~------------------~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~  159 (178)
                      -..|...|++++|.                  | ...+.+.+-..+...+.+++|..+|.++++.
T Consensus       400 a~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~  464 (490)
T 3n71_A          400 GLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREA  464 (490)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            55555555555554                  1 2234456667778889999999999999873

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=98.00  E-value=6.6e-05  Score=50.67  Aligned_cols=113  Identities=10%  Similarity=-0.032  Sum_probs=80.7

Q ss_pred             HHHHHHhcCChhHHHHHhccCCC--C-ChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHHhccccc-
Q 036068           12 IVSRYINRGQVDIARQCFDQMPE--R-DYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANLRA-   87 (178)
Q Consensus        12 li~~~~~~~~~~~a~~~~~~m~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~-   87 (178)
                      +...+.+.|++++|...|++..+  | +...|..+-..+...|++++|...|++..+.. +-+...+..+-.++...++ 
T Consensus        60 lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~  138 (208)
T 3urz_A           60 LALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYYLTAEQ  138 (208)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHhHH
Confidence            88999999999999999998753  3 78889999999999999999999999998875 3356777777777765543 


Q ss_pred             -hhhHHHHHHHHHHhCcccchHHHHHHHHHHHhcCChhhhc
Q 036068           88 -LDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ  127 (178)
Q Consensus        88 -~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~  127 (178)
                       .+.+...++....  ..|....+...-.++...|++++|.
T Consensus       139 ~~~~~~~~~~~~~~--~~~~~~a~~~~g~~~~~~~~~~~A~  177 (208)
T 3urz_A          139 EKKKLETDYKKLSS--PTKMQYARYRDGLSKLFTTRYEKAR  177 (208)
T ss_dssp             HHHHHHHHHC---C--CCHHHHHHHHHHHHHHHHHTHHHHH
T ss_pred             HHHHHHHHHHHHhC--CCchhHHHHHHHHHHHHccCHHHHH
Confidence             3444555544432  2232333334444566678888876

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=97.99  E-value=0.00018  Score=46.30  Aligned_cols=99  Identities=11%  Similarity=0.019  Sum_probs=70.0

Q ss_pred             hhHHHHHHHHHhhcCChhHHHHHHHHhHhC--------C---------CCCcHHHHHHHHHHhccccchhhHHHHHHHHH
Q 036068           37 YVLWTAMIDGYLRVNRFREALTLFQEMQTS--------N---------IMGDEFTIVSILTARANLRALDLGEWIKTYID   99 (178)
Q Consensus        37 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~--------~---------~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~   99 (178)
                      ...+...-..+.+.|++++|...|.+..+.        .         -+.+...|..+..++.+.|++++|...++...
T Consensus        11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al   90 (162)
T 3rkv_A           11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL   90 (162)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence            445677778889999999999999997664        0         11234677888888899999999999998888


Q ss_pred             HhCcccchHHHHHHHHHHHhcCChhhhccchhhHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 036068          100 KNKVKNDIFAGNALIDMYCICADVEKAQKDKFSWTTMIVGLAISGNGDKALDMFSQMLRA  159 (178)
Q Consensus       100 ~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~  159 (178)
                      +..+. +..                       .|..+..++...|++++|...|++.++.
T Consensus        91 ~~~p~-~~~-----------------------a~~~~g~~~~~~g~~~~A~~~~~~al~l  126 (162)
T 3rkv_A           91 KREET-NEK-----------------------ALFRRAKARIAAWKLDEAEEDLKLLLRN  126 (162)
T ss_dssp             HHSTT-CHH-----------------------HHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             hcCCc-chH-----------------------HHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence            76532 233                       3455555566666666666666666553

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=97.98  E-value=2e-05  Score=60.27  Aligned_cols=108  Identities=9%  Similarity=-0.046  Sum_probs=85.4

Q ss_pred             HHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHHhccccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHhcCChh
Q 036068           45 DGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVE  124 (178)
Q Consensus        45 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~  124 (178)
                      ..+.+.|++++|.+.|++..+.. +-+...+..+..++.+.|++++|.+.++...+... .+...+..+-..|.+.|+++
T Consensus        14 ~~~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p-~~~~~~~~lg~~~~~~g~~~   91 (477)
T 1wao_1           14 NDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDK-KYIKGYYRRAASNMALGKFR   91 (477)
T ss_dssp             SSTTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCT-TCHHHHHHHHHHHHHHTCHH
T ss_pred             HHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHH
Confidence            34567899999999999988764 33578899999999999999999999999998764 35788889999999999999


Q ss_pred             hhc----------c-chhhHHHHHHH--HHhcCChhHHHHHHH
Q 036068          125 KAQ----------K-DKFSWTTMIVG--LAISGNGDKALDMFS  154 (178)
Q Consensus       125 ~a~----------~-~~~~~~~li~~--~~~~~~~~~a~~~~~  154 (178)
                      +|.          | +...+..+..+  +.+.|++++|.++++
T Consensus        92 eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~  134 (477)
T 1wao_1           92 AALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE  134 (477)
T ss_dssp             HHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence            997          2 45556666555  788899999999988

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=97.97  E-value=1.9e-05  Score=48.17  Aligned_cols=99  Identities=12%  Similarity=0.039  Sum_probs=72.1

Q ss_pred             hcCChhHHHHHhccCCC-----C-ChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHHhccccchhhH
Q 036068           18 NRGQVDIARQCFDQMPE-----R-DYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANLRALDLG   91 (178)
Q Consensus        18 ~~~~~~~a~~~~~~m~~-----~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a   91 (178)
                      ..|++++|...|++..+     | +...|..+-..|.+.|++++|...|++..+.. +-+...+..+..++.+.|++++|
T Consensus         2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A   80 (117)
T 3k9i_A            2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF-PNHQALRVFYAMVLYNLGRYEQG   80 (117)
T ss_dssp             -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHH
T ss_pred             CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHcCCHHHH
Confidence            46888889998887653     2 45678888899999999999999999998875 33577888899999999999999


Q ss_pred             HHHHHHHHHhCc-ccchHHHHHHHHHH
Q 036068           92 EWIKTYIDKNKV-KNDIFAGNALIDMY  117 (178)
Q Consensus        92 ~~~~~~m~~~~~-~~~~~~~~~ll~~~  117 (178)
                      ...++...+... .++...+...+..|
T Consensus        81 ~~~~~~al~~~p~~~~~~~~~~ai~~~  107 (117)
T 3k9i_A           81 VELLLKIIAETSDDETIQSYKQAILFY  107 (117)
T ss_dssp             HHHHHHHHHHHCCCHHHHHTHHHHHHH
T ss_pred             HHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence            999998877643 23333344444433

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.94  E-value=0.00025  Score=52.81  Aligned_cols=151  Identities=9%  Similarity=-0.032  Sum_probs=111.0

Q ss_pred             HHHHHHHHHHhcCChhHHHHHhccCCC-----CC---h-hHHHHHHHHHhhcCChhHHHHHHHHhHh----CCCCC-cHH
Q 036068            8 SWTAIVSRYINRGQVDIARQCFDQMPE-----RD---Y-VLWTAMIDGYLRVNRFREALTLFQEMQT----SNIMG-DEF   73 (178)
Q Consensus         8 ~~~~li~~~~~~~~~~~a~~~~~~m~~-----~~---~-~~~~~li~~~~~~~~~~~a~~~~~~m~~----~~~~~-~~~   73 (178)
                      .+..+...|.+.|++++|.+.+....+     ++   . ...+.+-..+...|+.++|.+++++...    .+..+ -..
T Consensus        57 al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~  136 (434)
T 4b4t_Q           57 SILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHS  136 (434)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHH
Confidence            467889999999999999999988753     11   1 1233333344466889999999888643    23222 356


Q ss_pred             HHHHHHHHhccccchhhHHHHHHHHHHhC--c---ccchHHHHHHHHHHHhcCChhhhc-------------cc-----h
Q 036068           74 TIVSILTARANLRALDLGEWIKTYIDKNK--V---KNDIFAGNALIDMYCICADVEKAQ-------------KD-----K  130 (178)
Q Consensus        74 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~--~---~~~~~~~~~ll~~~~~~~~~~~a~-------------~~-----~  130 (178)
                      ++..+...+...|++++|..+++.+...-  .   .....++..+...|...|++++|.             ++     .
T Consensus       137 ~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~  216 (434)
T 4b4t_Q          137 LSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVA  216 (434)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHH
T ss_pred             HHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHH
Confidence            78889999999999999999998876431  1   123567888899999999999987             11     2


Q ss_pred             hhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 036068          131 FSWTTMIVGLAISGNGDKALDMFSQMLR  158 (178)
Q Consensus       131 ~~~~~li~~~~~~~~~~~a~~~~~~m~~  158 (178)
                      ..+..+...+...|++++|...|.+..+
T Consensus       217 ~~~~~~g~~~~~~~~y~~A~~~~~~a~~  244 (434)
T 4b4t_Q          217 ELDLMSGILHCEDKDYKTAFSYFFESFE  244 (434)
T ss_dssp             HHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence            4456666777888999999998888764

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=97.91  E-value=0.00025  Score=50.24  Aligned_cols=90  Identities=8%  Similarity=-0.148  Sum_probs=72.8

Q ss_pred             ChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHHhccccchhhHHHHHHHHHHhCcccchHHHHHHHH
Q 036068           36 DYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALID  115 (178)
Q Consensus        36 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~  115 (178)
                      +...+..+-..+.+.|++++|...|++..+.. +-+...|..+..++.+.|++++|...++...+... .+...+..+-.
T Consensus         3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~   80 (281)
T 2c2l_A            3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDG-QSVKAHFFLGQ   80 (281)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCT-TCHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CCHHHHHHHHH
Confidence            45567778888999999999999999988764 23678888899999999999999999999887653 34666777777


Q ss_pred             HHHhcCChhhhc
Q 036068          116 MYCICADVEKAQ  127 (178)
Q Consensus       116 ~~~~~~~~~~a~  127 (178)
                      .|...|++++|.
T Consensus        81 ~~~~~g~~~~A~   92 (281)
T 2c2l_A           81 CQLEMESYDEAI   92 (281)
T ss_dssp             HHHHTTCHHHHH
T ss_pred             HHHHcCCHHHHH
Confidence            777777777775

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=97.90  E-value=0.00013  Score=55.36  Aligned_cols=121  Identities=7%  Similarity=0.001  Sum_probs=96.0

Q ss_pred             ChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCc--------------HHHHHHHHHHhccccchhhHHHHHHHHHHh
Q 036068           36 DYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGD--------------EFTIVSILTARANLRALDLGEWIKTYIDKN  101 (178)
Q Consensus        36 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~--------------~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~  101 (178)
                      ....|..+-..+.+.|++++|...|++..+..-...              ...|..+-.++.+.+++++|...++...+.
T Consensus       267 ~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~  346 (457)
T 1kt0_A          267 QAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGL  346 (457)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence            455788888899999999999999999877531111              578889999999999999999999999987


Q ss_pred             CcccchHHHHHHHHHHHhcCChhhhc-----------cchhhHHHHHHHHHhcCChhHHH-HHHHHHH
Q 036068          102 KVKNDIFAGNALIDMYCICADVEKAQ-----------KDKFSWTTMIVGLAISGNGDKAL-DMFSQML  157 (178)
Q Consensus       102 ~~~~~~~~~~~ll~~~~~~~~~~~a~-----------~~~~~~~~li~~~~~~~~~~~a~-~~~~~m~  157 (178)
                      ... +...|..+-.+|.+.|++++|.           .+...+..+...+.+.++.+++. .++++|.
T Consensus       347 ~p~-~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~f  413 (457)
T 1kt0_A          347 DSA-NEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERDRRIYANMF  413 (457)
T ss_dssp             STT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred             CCc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            643 5788888899999999999987           35677888888888888888766 3555554

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=97.83  E-value=0.00063  Score=54.28  Aligned_cols=155  Identities=9%  Similarity=-0.050  Sum_probs=113.2

Q ss_pred             chhHHHHHHHHHHhcCChhHHH-HHhccCCC--C-ChhHHHHHHHHHhhcCChhHHHHHHHHhHhCC---------CCC-
Q 036068            5 DVISWTAIVSRYINRGQVDIAR-QCFDQMPE--R-DYVLWTAMIDGYLRVNRFREALTLFQEMQTSN---------IMG-   70 (178)
Q Consensus         5 ~~~~~~~li~~~~~~~~~~~a~-~~~~~m~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~---------~~~-   70 (178)
                      +...|-..+..+.+.|+.++|. ++|++...  | +...|-..+....+.|++++|.++|++.....         -.| 
T Consensus       342 ~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~  421 (679)
T 4e6h_A          342 APEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPT  421 (679)
T ss_dssp             CHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTT
T ss_pred             CHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCc
Confidence            4556777777788889998896 88887653  3 55567778888889999999999999987631         013 


Q ss_pred             -----------cHHHHHHHHHHhccccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHhc-CChhhhc-----------
Q 036068           71 -----------DEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC-ADVEKAQ-----------  127 (178)
Q Consensus        71 -----------~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~-~~~~~a~-----------  127 (178)
                                 ....|...++...+.+..+.|..+|....+.-...+..+|-.....-.+. ++.+.|.           
T Consensus       422 ~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p  501 (679)
T 4e6h_A          422 NESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFA  501 (679)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHT
T ss_pred             chhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCC
Confidence                       23468888888888999999999999998762222344444333333344 3466654           


Q ss_pred             cchhhHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 036068          128 KDKFSWTTMIVGLAISGNGDKALDMFSQMLRA  159 (178)
Q Consensus       128 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~  159 (178)
                      .+...|...+.-....|+.+.|..+|++....
T Consensus       502 ~~~~~w~~y~~fe~~~~~~~~AR~lferal~~  533 (679)
T 4e6h_A          502 TDGEYINKYLDFLIYVNEESQVKSLFESSIDK  533 (679)
T ss_dssp             TCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTT
T ss_pred             CchHHHHHHHHHHHhCCCHHHHHHHHHHHHHh
Confidence            35666778888888899999999999998875

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=97.83  E-value=0.0022  Score=48.58  Aligned_cols=145  Identities=12%  Similarity=-0.016  Sum_probs=63.7

Q ss_pred             HHHHHHHHHHhcC---ChhHHHHHhccCCC---CChhHHHHHHHHHhhc----CChhHHHHHHHHhHhCCCCCcHHHHHH
Q 036068            8 SWTAIVSRYINRG---QVDIARQCFDQMPE---RDYVLWTAMIDGYLRV----NRFREALTLFQEMQTSNIMGDEFTIVS   77 (178)
Q Consensus         8 ~~~~li~~~~~~~---~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~----~~~~~a~~~~~~m~~~~~~~~~~~~~~   77 (178)
                      .+..+-..+.+.|   +.++|.+.|++.-+   ++...+..|-..|...    ++.++|.+.|++.. .|   +...+..
T Consensus       178 a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-~g---~~~a~~~  253 (452)
T 3e4b_A          178 CYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA-PG---YPASWVS  253 (452)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-GG---STHHHHH
T ss_pred             HHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-CC---CHHHHHH
Confidence            4444444444455   44555555544321   2222223333344332    35555555555544 22   2222222


Q ss_pred             HHHH-h--ccccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHhcC-----Chhhhc--------cchhhHHHHHHHHH
Q 036068           78 ILTA-R--ANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICA-----DVEKAQ--------KDKFSWTTMIVGLA  141 (178)
Q Consensus        78 ll~~-~--~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~-----~~~~a~--------~~~~~~~~li~~~~  141 (178)
                      +-.. +  ...+++++|.+.|+...+.|   ++..+..+-..|. .|     +.++|.        .+...+..|-..|.
T Consensus       254 Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa~g~~~A~~~Lg~~y~  329 (452)
T 3e4b_A          254 LAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAVGREVAADYYLGQIYR  329 (452)
T ss_dssp             HHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTTTTCHHHHHHHHHHHH
T ss_pred             HHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence            3222 2  33455555555555555544   2333333333333 23     444433        23344444444444


Q ss_pred             h----cCChhHHHHHHHHHHHcC
Q 036068          142 I----SGNGDKALDMFSQMLRAS  160 (178)
Q Consensus       142 ~----~~~~~~a~~~~~~m~~~g  160 (178)
                      .    ..+.++|...|++..+.|
T Consensus       330 ~G~g~~~d~~~A~~~~~~Aa~~g  352 (452)
T 3e4b_A          330 RGYLGKVYPQKALDHLLTAARNG  352 (452)
T ss_dssp             TTTTSSCCHHHHHHHHHHHHTTT
T ss_pred             CCCCCCcCHHHHHHHHHHHHhhC
Confidence            3    226666666666666554

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=97.82  E-value=9.3e-05  Score=56.79  Aligned_cols=113  Identities=6%  Similarity=-0.073  Sum_probs=83.3

Q ss_pred             HHHhcCChhHHHHHhccCCC----------C-ChhHHHHHHHHHhhcCChhHHHHHHHHhHh-----CCC-CC-cHHHHH
Q 036068           15 RYINRGQVDIARQCFDQMPE----------R-DYVLWTAMIDGYLRVNRFREALTLFQEMQT-----SNI-MG-DEFTIV   76 (178)
Q Consensus        15 ~~~~~~~~~~a~~~~~~m~~----------~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~-----~~~-~~-~~~~~~   76 (178)
                      .+-..|++++|..++++..+          | ...+++.|...|...|++++|..++++.++     .|- .| ...+++
T Consensus       318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~  397 (490)
T 3n71_A          318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM  397 (490)
T ss_dssp             HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred             HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence            45679999999988876532          2 456899999999999999999999998654     121 22 346889


Q ss_pred             HHHHHhccccchhhHHHHHHHHHH-----hCcc-c-chHHHHHHHHHHHhcCChhhhc
Q 036068           77 SILTARANLRALDLGEWIKTYIDK-----NKVK-N-DIFAGNALIDMYCICADVEKAQ  127 (178)
Q Consensus        77 ~ll~~~~~~~~~~~a~~~~~~m~~-----~~~~-~-~~~~~~~ll~~~~~~~~~~~a~  127 (178)
                      .|-..|...|++++|+.++++..+     .|.. | ...+.+.+-..+...+.+++|.
T Consensus       398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae  455 (490)
T 3n71_A          398 RAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNE  455 (490)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999987653     2432 2 2344556666677777777653

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=97.81  E-value=0.00078  Score=47.86  Aligned_cols=105  Identities=11%  Similarity=-0.095  Sum_probs=81.7

Q ss_pred             HHHHHHHHHHhcCChhHHHHHhccCCCC-C----hhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCc--HHHHHHHHH
Q 036068            8 SWTAIVSRYINRGQVDIARQCFDQMPER-D----YVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGD--EFTIVSILT   80 (178)
Q Consensus         8 ~~~~li~~~~~~~~~~~a~~~~~~m~~~-~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~--~~~~~~ll~   80 (178)
                      ....+-..+.+.+++++|+..|+...+. +    ...+..+-.++.+.|++++|++.|++.......|.  .......-.
T Consensus       137 ~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~gl  216 (282)
T 4f3v_A          137 VAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAM  216 (282)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHH
Confidence            5555667899999999999999976653 2    23667778899999999999999999875443254  335666777


Q ss_pred             HhccccchhhHHHHHHHHHHhCcccchHHHHHHH
Q 036068           81 ARANLRALDLGEWIKTYIDKNKVKNDIFAGNALI  114 (178)
Q Consensus        81 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll  114 (178)
                      ++.+.|+.++|..+|+.+....+.  ...+..|.
T Consensus       217 aL~~lGr~deA~~~l~~a~a~~P~--~~~~~aL~  248 (282)
T 4f3v_A          217 ARRSQGNESAAVALLEWLQTTHPE--PKVAAALK  248 (282)
T ss_dssp             HHHHHTCHHHHHHHHHHHHHHSCC--HHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHhcCCc--HHHHHHHh
Confidence            889999999999999999998654  55555553

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=97.80  E-value=0.00049  Score=39.25  Aligned_cols=81  Identities=11%  Similarity=0.019  Sum_probs=51.2

Q ss_pred             hhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHHhccccchhhHHHHHHHHHHhCcccchHHHHHHHHH
Q 036068           37 YVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDM  116 (178)
Q Consensus        37 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~  116 (178)
                      ...+..+-..+.+.|++++|...|++..+.. +.+...+..+..++.+.|++++|...++...+..+. +...+..+-..
T Consensus         9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~l~~~   86 (91)
T 1na3_A            9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN-NAEAKQNLGNA   86 (91)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CHHHHHHHHHH
Confidence            3455666667777777777777777766553 224566667777777777777777777777665432 34445544444


Q ss_pred             HHh
Q 036068          117 YCI  119 (178)
Q Consensus       117 ~~~  119 (178)
                      +.+
T Consensus        87 ~~~   89 (91)
T 1na3_A           87 KQK   89 (91)
T ss_dssp             HHH
T ss_pred             HHh
Confidence            433

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=97.80  E-value=0.00026  Score=42.10  Aligned_cols=63  Identities=10%  Similarity=0.006  Sum_probs=34.7

Q ss_pred             hHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHHhccccchhhHHHHHHHHHHh
Q 036068           38 VLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKN  101 (178)
Q Consensus        38 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~  101 (178)
                      ..|..+-..+.+.|++++|.+.|++..+.. +.+...+..+-.++.+.|++++|...++...+.
T Consensus         5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~   67 (111)
T 2l6j_A            5 EKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRY   67 (111)
T ss_dssp             HHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence            344455555555666666666666555443 224455555555566666666666666555544

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=97.75  E-value=0.00021  Score=52.05  Aligned_cols=119  Identities=12%  Similarity=0.046  Sum_probs=56.7

Q ss_pred             hHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHH------------------HHHHHHHHhccccchhhHHHHHHHHH
Q 036068           38 VLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEF------------------TIVSILTARANLRALDLGEWIKTYID   99 (178)
Q Consensus        38 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~------------------~~~~ll~~~~~~~~~~~a~~~~~~m~   99 (178)
                      ..+..+-..+.+.|++++|...|++..+..  |+..                  .|..+-.++.+.+++++|...++...
T Consensus       180 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~--p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al  257 (338)
T 2if4_A          180 DRRKMDGNSLFKEEKLEEAMQQYEMAIAYM--GDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVL  257 (338)
T ss_dssp             HHHHHHHHHTCSSSCCHHHHHHHHHHHHHS--CHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHHh--ccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            345555566666777777777777655432  3322                  56667777777777777777777777


Q ss_pred             HhCcccchHHHHHHHHHHHhcCChhhhc----------c-chhhHHHHHHH-HHhcCChhHHHHHHHHHHHc
Q 036068          100 KNKVKNDIFAGNALIDMYCICADVEKAQ----------K-DKFSWTTMIVG-LAISGNGDKALDMFSQMLRA  159 (178)
Q Consensus       100 ~~~~~~~~~~~~~ll~~~~~~~~~~~a~----------~-~~~~~~~li~~-~~~~~~~~~a~~~~~~m~~~  159 (178)
                      +... .+...|..+-.+|...|++++|.          | +...+..+... ....+..+++..+|++|...
T Consensus       258 ~~~p-~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~~~~~~~l~~  328 (338)
T 2if4_A          258 TEEE-KNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQKEMYKGIFKG  328 (338)
T ss_dssp             HHCT-TCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC------------------------------------
T ss_pred             HhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence            6543 24566667777777777777766          2 33344444433 23456677888888888753

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=97.73  E-value=0.0049  Score=45.16  Aligned_cols=153  Identities=10%  Similarity=-0.039  Sum_probs=109.6

Q ss_pred             cchhHHHHHHHHHHhc-C-ChhHHHHHhccCCC---CChhHHHHHHHHHhhcCChh--------HHHHHHHHhHhCCCCC
Q 036068            4 KDVISWTAIVSRYINR-G-QVDIARQCFDQMPE---RDYVLWTAMIDGYLRVNRFR--------EALTLFQEMQTSNIMG   70 (178)
Q Consensus         4 p~~~~~~~li~~~~~~-~-~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~~~--------~a~~~~~~m~~~~~~~   70 (178)
                      .+..+|+.--..+.+. + ++++++++++++.+   +|...|+.--..+.+.|.++        ++++.++++.+... -
T Consensus       121 Kny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp-~  199 (349)
T 3q7a_A          121 KSYQVWHHRLLLLDRISPQDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDG-R  199 (349)
T ss_dssp             CCHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCT-T
T ss_pred             CcHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCC-C
Confidence            4455676666666665 6 77888888888765   36666666555555555555        88888888888764 3


Q ss_pred             cHHHHHHHHHHhccccc-------hhhHHHHHHHHHHhCcccchHHHHHHHHHHHhcCChhh------------------
Q 036068           71 DEFTIVSILTARANLRA-------LDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEK------------------  125 (178)
Q Consensus        71 ~~~~~~~ll~~~~~~~~-------~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~------------------  125 (178)
                      |...|+---..+.+.+.       ++++.+.++..+...+ -+...|+-+-..+.+.|....                  
T Consensus       200 N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~P-~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~  278 (349)
T 3q7a_A          200 NNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLIP-HNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDI  278 (349)
T ss_dssp             CHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC-------
T ss_pred             CHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhcCCCcccccccccccccccccccc
Confidence            77778777777777665       5778888888877764 368888887777777665410                  


Q ss_pred             --h-----------------ccchhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 036068          126 --A-----------------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLR  158 (178)
Q Consensus       126 --a-----------------~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~  158 (178)
                        .                 .+....+..|.+.|...|+.++|.++++.+.+
T Consensus       279 ~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~  330 (349)
T 3q7a_A          279 ETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSS  330 (349)
T ss_dssp             -------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Confidence              0                 14566778888999999999999999999865

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=97.73  E-value=0.00014  Score=43.24  Aligned_cols=90  Identities=10%  Similarity=0.127  Sum_probs=70.0

Q ss_pred             cchhHHHHHHHHHHhcCChhHHHHHhccCCC---CChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCc-------HH
Q 036068            4 KDVISWTAIVSRYINRGQVDIARQCFDQMPE---RDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGD-------EF   73 (178)
Q Consensus         4 p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~-------~~   73 (178)
                      ++...|..+...+.+.|++++|.+.|++..+   .+...|..+-..+.+.|++++|.+.+++..+..  |+       ..
T Consensus         2 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~   79 (111)
T 2l6j_A            2 SQFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYT--STAEHVAIRSK   79 (111)
T ss_dssp             THHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC--SSTTSHHHHHH
T ss_pred             chHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCccHHHHHHH
Confidence            4667888899999999999999999998653   377888899999999999999999999988764  44       44


Q ss_pred             HHHHHHHHhccccchhhHHHHH
Q 036068           74 TIVSILTARANLRALDLGEWIK   95 (178)
Q Consensus        74 ~~~~ll~~~~~~~~~~~a~~~~   95 (178)
                      .+..+-.++...|+.+.+...+
T Consensus        80 ~~~~~~~~~~~~~~~~~a~~~~  101 (111)
T 2l6j_A           80 LQYRLELAQGAVGSVQIPVVEV  101 (111)
T ss_dssp             HHHHHHHHHHHHHCCCCCSSSS
T ss_pred             HHHHHHHHHHHHHhHhhhHhHH
Confidence            5555555666666665554433

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=97.70  E-value=0.00019  Score=41.04  Aligned_cols=78  Identities=15%  Similarity=0.324  Sum_probs=61.5

Q ss_pred             chhHHHHHHHHHHhcCChhHHHHHhccCCC---CChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHH
Q 036068            5 DVISWTAIVSRYINRGQVDIARQCFDQMPE---RDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTA   81 (178)
Q Consensus         5 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~   81 (178)
                      +...|..+...+.+.|++++|...|++..+   .+...+..+-..+.+.|++++|.+.|++..+.. +-+...+..+-.+
T Consensus         8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~   86 (91)
T 1na3_A            8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAKQNLGNA   86 (91)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCHHHHHHHHHH
Confidence            567788899999999999999999997643   367788889999999999999999999988764 2244555554444


Q ss_pred             hc
Q 036068           82 RA   83 (178)
Q Consensus        82 ~~   83 (178)
                      +.
T Consensus        87 ~~   88 (91)
T 1na3_A           87 KQ   88 (91)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=97.67  E-value=0.00041  Score=51.28  Aligned_cols=97  Identities=7%  Similarity=-0.071  Sum_probs=68.0

Q ss_pred             hHHHHHHHHHhhcCChhHHHHHHHHhHhC---------------CCCCcHHHHHHHHHHhccccchhhHHHHHHHHHHhC
Q 036068           38 VLWTAMIDGYLRVNRFREALTLFQEMQTS---------------NIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNK  102 (178)
Q Consensus        38 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~---------------~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~  102 (178)
                      ..+..+-..+.+.|++++|.+.|++..+.               --.-+...|..+..++.+.+++++|...++...+..
T Consensus       224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~  303 (370)
T 1ihg_A          224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEID  303 (370)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhC
Confidence            35777888899999999999999987761               112245678888888899999999999998888754


Q ss_pred             cccchHHHHHHHHHHHhcCChhhhccchhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 036068          103 VKNDIFAGNALIDMYCICADVEKAQKDKFSWTTMIVGLAISGNGDKALDMFSQMLR  158 (178)
Q Consensus       103 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~  158 (178)
                      .. +...                       |..+..+|...|++++|.+.|++.++
T Consensus       304 p~-~~~a-----------------------~~~lg~~~~~~g~~~eA~~~l~~Al~  335 (370)
T 1ihg_A          304 PS-NTKA-----------------------LYRRAQGWQGLKEYDQALADLKKAQE  335 (370)
T ss_dssp             TT-CHHH-----------------------HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             ch-hHHH-----------------------HHHHHHHHHHccCHHHHHHHHHHHHH
Confidence            32 2333                       44455555555666666666666554

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=97.67  E-value=0.00027  Score=45.85  Aligned_cols=93  Identities=14%  Similarity=-0.027  Sum_probs=65.8

Q ss_pred             HHHHHHHHHHhcCChhHHHHHhccCCC--CC--------h-----hHHHHHHHHHhhcCChhHHHHHHHHhHhC-----C
Q 036068            8 SWTAIVSRYINRGQVDIARQCFDQMPE--RD--------Y-----VLWTAMIDGYLRVNRFREALTLFQEMQTS-----N   67 (178)
Q Consensus         8 ~~~~li~~~~~~~~~~~a~~~~~~m~~--~~--------~-----~~~~~li~~~~~~~~~~~a~~~~~~m~~~-----~   67 (178)
                      .+...-..+.+.|++++|...|++..+  |+        .     ..|..+-.++.+.|++++|+..+++..+.     .
T Consensus        13 ~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e   92 (159)
T 2hr2_A           13 LALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGE   92 (159)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcccc
Confidence            455566677788888888888887643  22        2     27777778888888888888888887664     1


Q ss_pred             CCCc-HHHH----HHHHHHhccccchhhHHHHHHHHHH
Q 036068           68 IMGD-EFTI----VSILTARANLRALDLGEWIKTYIDK  100 (178)
Q Consensus        68 ~~~~-~~~~----~~ll~~~~~~~~~~~a~~~~~~m~~  100 (178)
                      +.|+ ...|    ...-.++...|++++|...|+...+
T Consensus        93 ~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle  130 (159)
T 2hr2_A           93 LNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE  130 (159)
T ss_dssp             TTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             CCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence            1343 4456    6677778888888888888877665

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=97.63  E-value=0.0017  Score=42.11  Aligned_cols=115  Identities=16%  Similarity=0.179  Sum_probs=81.6

Q ss_pred             HHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCc-------------HHHHHHHHHHhccccchhhHHHHHHHHHHhCccc
Q 036068           39 LWTAMIDGYLRVNRFREALTLFQEMQTSNIMGD-------------EFTIVSILTARANLRALDLGEWIKTYIDKNKVKN  105 (178)
Q Consensus        39 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~-------------~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~  105 (178)
                      .+...-..+.+.|++++|.+.|++..+..  |+             ...|...-.++.+.|++++|...++..++.    
T Consensus        13 ~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~--p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l----   86 (159)
T 2hr2_A           13 LALSDAQRQLVAGEYDEAAANCRRAMEIS--HTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHY----   86 (159)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHH--TTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh----
Confidence            44556667888999999999999987653  33             338888899999999999999999888764    


Q ss_pred             chHHHHHHHHHHHhcCChhhhccchhhH----HHHHHHHHhcCChhHHHHHHHHHHH-----cCCCCChhHHHHHH
Q 036068          106 DIFAGNALIDMYCICADVEKAQKDKFSW----TTMIVGLAISGNGDKALDMFSQMLR-----ASIKPDEVAYVGVL  172 (178)
Q Consensus       106 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~----~~li~~~~~~~~~~~a~~~~~~m~~-----~g~~p~~~t~~~li  172 (178)
                                 +-+.+..+.  .+...|    ...-.++...|++++|+..|++.++     .|+.+......-.+
T Consensus        87 -----------~n~~~e~~p--d~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~~~~~~~~~  149 (159)
T 2hr2_A           87 -----------FNRRGELNQ--DEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGKERMMEVA  149 (159)
T ss_dssp             -----------HHHHCCTTS--THHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTHHHHHHHH
T ss_pred             -----------hhccccCCC--chHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHH
Confidence                       111111110  123455    7777888899999999999998864     35655555444433

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=97.63  E-value=0.0072  Score=45.72  Aligned_cols=146  Identities=12%  Similarity=0.033  Sum_probs=86.9

Q ss_pred             hhHHHHHHHHHHhcCCh----hHHHHHhccCCCCChhHHHHHHHHHhhcC---ChhHHHHHHHHhHhCCCCCcHHHHHHH
Q 036068            6 VISWTAIVSRYINRGQV----DIARQCFDQMPERDYVLWTAMIDGYLRVN---RFREALTLFQEMQTSNIMGDEFTIVSI   78 (178)
Q Consensus         6 ~~~~~~li~~~~~~~~~----~~a~~~~~~m~~~~~~~~~~li~~~~~~~---~~~~a~~~~~~m~~~~~~~~~~~~~~l   78 (178)
                      +..+..+...+...+.+    +.+..+++.....+...+..|-..|.+.|   +.++|++.|++..+.| .++...+..+
T Consensus       141 ~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~L  219 (452)
T 3e4b_A          141 PEAGLAQVLLYRTQGTYDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSV  219 (452)
T ss_dssp             TTHHHHHHHHHHHHTCGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHH
Confidence            34455566666666633    33444555555555557777777777777   7777777777777766 3444544555


Q ss_pred             HHHhccc----cchhhHHHHHHHHHHhCcccchHHHHHHHHH-H--HhcCChhhhc---------cchhhHHHHHHHHHh
Q 036068           79 LTARANL----RALDLGEWIKTYIDKNKVKNDIFAGNALIDM-Y--CICADVEKAQ---------KDKFSWTTMIVGLAI  142 (178)
Q Consensus        79 l~~~~~~----~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~-~--~~~~~~~~a~---------~~~~~~~~li~~~~~  142 (178)
                      -..|...    +++++|...|+... .|   ++..+..+-.. |  ...++.++|.         .+...+..|-..|. 
T Consensus       220 g~~y~~g~~~~~d~~~A~~~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~-  294 (452)
T 3e4b_A          220 ARVLGDATLGTPDEKTAQALLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAADQPRAELLLGKLYY-  294 (452)
T ss_dssp             HHHHTCGGGSSCCHHHHHHHHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-
T ss_pred             HHHHhCCCCCCCCHHHHHHHHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH-
Confidence            5555444    56777777777665 22   33344444443 2  3466666665         35555666665555 


Q ss_pred             cC-----ChhHHHHHHHHHH
Q 036068          143 SG-----NGDKALDMFSQML  157 (178)
Q Consensus       143 ~~-----~~~~a~~~~~~m~  157 (178)
                      .|     ++++|.+.|++..
T Consensus       295 ~G~g~~~d~~~A~~~~~~Aa  314 (452)
T 3e4b_A          295 EGKWVPADAKAAEAHFEKAV  314 (452)
T ss_dssp             HCSSSCCCHHHHHHHHHTTT
T ss_pred             cCCCCCCCHHHHHHHHHHHh
Confidence            44     7777777777655

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=97.57  E-value=0.00066  Score=40.04  Aligned_cols=64  Identities=17%  Similarity=0.007  Sum_probs=35.3

Q ss_pred             ChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHHhccccchhhHHHHHHHHHH
Q 036068           36 DYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDK  100 (178)
Q Consensus        36 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~  100 (178)
                      +...+..+-..|.+.|++++|...|++..+.. +-+...|..+-.++.+.|++++|.+.++...+
T Consensus         6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~   69 (100)
T 3ma5_A            6 DPFTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE   69 (100)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            34455555555566666666666666655543 12344555555566666666666666655443

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=97.55  E-value=0.00028  Score=42.60  Aligned_cols=65  Identities=8%  Similarity=-0.103  Sum_probs=48.2

Q ss_pred             ChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHHhccccchhhHHHHHHHHHHh
Q 036068           36 DYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKN  101 (178)
Q Consensus        36 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~  101 (178)
                      +...+..+-..|...|++++|...|++..+.. +.+...+..+..++.+.|++++|...++...+.
T Consensus        18 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~   82 (115)
T 2kat_A           18 NMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWESGLAA   82 (115)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            56677777778888888888888888877654 234567777777788888888888888776654

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=97.47  E-value=0.00054  Score=51.68  Aligned_cols=88  Identities=5%  Similarity=-0.077  Sum_probs=54.2

Q ss_pred             HHHHHHhcCChhHHHHHhccCCC-------C----ChhHHHHHHHHHhhcCChhHHHHHHHHhHh-----CC-CCCc-HH
Q 036068           12 IVSRYINRGQVDIARQCFDQMPE-------R----DYVLWTAMIDGYLRVNRFREALTLFQEMQT-----SN-IMGD-EF   73 (178)
Q Consensus        12 li~~~~~~~~~~~a~~~~~~m~~-------~----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~-----~~-~~~~-~~   73 (178)
                      .+..+.+.|++++|.+++++..+       +    ...+++.|...|...|++++|..++++.+.     .| -.|+ ..
T Consensus       293 ~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~  372 (429)
T 3qwp_A          293 KIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGV  372 (429)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHH
T ss_pred             HHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHH
Confidence            34556667777777777664421       1    344667777777777777777777776543     11 1122 34


Q ss_pred             HHHHHHHHhccccchhhHHHHHHHHH
Q 036068           74 TIVSILTARANLRALDLGEWIKTYID   99 (178)
Q Consensus        74 ~~~~ll~~~~~~~~~~~a~~~~~~m~   99 (178)
                      +++.|-..|...|++++|+.++++..
T Consensus       373 ~l~nLa~~~~~~g~~~eA~~~~~~Al  398 (429)
T 3qwp_A          373 QVMKVGKLQLHQGMFPQAMKNLRLAF  398 (429)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence            66677777777777777777776544

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=97.41  E-value=0.0003  Score=51.26  Aligned_cols=109  Identities=13%  Similarity=0.043  Sum_probs=79.2

Q ss_pred             hhHHHHHHHHHHhcCChhHHHHHhccCCC--CCh------------------hHHHHHHHHHhhcCChhHHHHHHHHhHh
Q 036068            6 VISWTAIVSRYINRGQVDIARQCFDQMPE--RDY------------------VLWTAMIDGYLRVNRFREALTLFQEMQT   65 (178)
Q Consensus         6 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~--~~~------------------~~~~~li~~~~~~~~~~~a~~~~~~m~~   65 (178)
                      ...|..+-..+.+.|++++|...|++..+  |+.                  ..|..+-.+|.+.|++++|...+++..+
T Consensus       179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al~  258 (338)
T 2if4_A          179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVLT  258 (338)
T ss_dssp             HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            34577788888999999999999998543  332                  2788888999999999999999999887


Q ss_pred             CCCCCcHHHHHHHHHHhccccchhhHHHHHHHHHHhCcccchHHHHHHHHH
Q 036068           66 SNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDM  116 (178)
Q Consensus        66 ~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~  116 (178)
                      .. +-+...|..+-.++...|++++|...|+...+.... +...+..+...
T Consensus       259 ~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~-~~~a~~~L~~l  307 (338)
T 2if4_A          259 EE-EKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPD-DKAIRRELRAL  307 (338)
T ss_dssp             HC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC----------------
T ss_pred             hC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHH
Confidence            64 336788999999999999999999999988765432 34444444433

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=97.37  E-value=0.0071  Score=36.17  Aligned_cols=71  Identities=10%  Similarity=-0.129  Sum_probs=52.3

Q ss_pred             hHHHHHHHHhHhCCCCCcHHHHHHHHHHhccccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHhcCChhhh
Q 036068           54 REALTLFQEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKA  126 (178)
Q Consensus        54 ~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a  126 (178)
                      ++|.+.|++..+.. +.+...+..+..++.+.|++++|...++...+.... +...|..+-..|.+.|++++|
T Consensus         2 ~~a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A   72 (115)
T 2kat_A            2 QAITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPT-YSVAWKWLGKTLQGQGDRAGA   72 (115)
T ss_dssp             CCHHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHH
T ss_pred             hHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHcCCHHHH
Confidence            35677788877764 346778888999999999999999999999887643 355566666666666666655

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=97.32  E-value=0.0018  Score=48.87  Aligned_cols=89  Identities=10%  Similarity=-0.030  Sum_probs=64.0

Q ss_pred             hcCChhHHHHHHHHhHh---CCCCCc----HHHHHHHHHHhccccchhhHHHHHHHHHHh-----CcccchHHHHHHHHH
Q 036068           49 RVNRFREALTLFQEMQT---SNIMGD----EFTIVSILTARANLRALDLGEWIKTYIDKN-----KVKNDIFAGNALIDM  116 (178)
Q Consensus        49 ~~~~~~~a~~~~~~m~~---~~~~~~----~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~-----~~~~~~~~~~~ll~~  116 (178)
                      ..|++++|..++++.++   .-+.|+    ..+++.+..+|...|++++|+.++++..+.     |. .++.+       
T Consensus       310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~-~Hp~~-------  381 (433)
T 3qww_A          310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPV-YSLNV-------  381 (433)
T ss_dssp             TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCS-SCHHH-------
T ss_pred             hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCC-CChHH-------
Confidence            45788999999988654   212222    468889999999999999999999877642     21 12221       


Q ss_pred             HHhcCChhhhccchhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 036068          117 YCICADVEKAQKDKFSWTTMIVGLAISGNGDKALDMFSQMLR  158 (178)
Q Consensus       117 ~~~~~~~~~a~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~  158 (178)
                                   ..+++.|...|..+|++++|..+|++.++
T Consensus       382 -------------a~~l~nLa~~~~~qg~~~eA~~~~~~Al~  410 (433)
T 3qww_A          382 -------------ASMWLKLGRLYMGLENKAAGEKALKKAIA  410 (433)
T ss_dssp             -------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             -------------HHHHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence                         34577788888888888888888887764

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=97.31  E-value=0.012  Score=42.28  Aligned_cols=38  Identities=5%  Similarity=-0.372  Sum_probs=17.4

Q ss_pred             cchhhHHHHHHHHHHhCcccchHHHHHHHHHHHhcCChh
Q 036068           86 RALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVE  124 (178)
Q Consensus        86 ~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~  124 (178)
                      ++++++..+++.+.+...+ +..+|+.--..+.+.|.++
T Consensus       124 ~~~~~EL~~~~~~l~~~pk-ny~aW~~R~~vl~~l~~~~  161 (306)
T 3dra_A          124 FDPYREFDILEAMLSSDPK-NHHVWSYRKWLVDTFDLHN  161 (306)
T ss_dssp             CCTHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCTT
T ss_pred             CCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcccC
Confidence            3444555555555444322 3444444444444444443

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=97.27  E-value=0.0035  Score=47.31  Aligned_cols=96  Identities=13%  Similarity=0.028  Sum_probs=68.4

Q ss_pred             HHHHHhhcCChhHHHHHHHHhHhCC---CCC----cHHHHHHHHHHhccccchhhHHHHHHHHHHhC---c-ccchHHHH
Q 036068           43 MIDGYLRVNRFREALTLFQEMQTSN---IMG----DEFTIVSILTARANLRALDLGEWIKTYIDKNK---V-KNDIFAGN  111 (178)
Q Consensus        43 li~~~~~~~~~~~a~~~~~~m~~~~---~~~----~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~---~-~~~~~~~~  111 (178)
                      .+..+.+.|++++|.+++++.++..   +.|    ...+++.+..+|...|++++|+.++++..+..   . +.++.+  
T Consensus       293 ~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~--  370 (429)
T 3qwp_A          293 KIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVR--  370 (429)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHH--
T ss_pred             HHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHH--
Confidence            3556667899999999999876531   222    25688899999999999999999998776421   1 112222  


Q ss_pred             HHHHHHHhcCChhhhccchhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 036068          112 ALIDMYCICADVEKAQKDKFSWTTMIVGLAISGNGDKALDMFSQMLR  158 (178)
Q Consensus       112 ~ll~~~~~~~~~~~a~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~  158 (178)
                                        ..+++.|...|..+|++++|..++++.++
T Consensus       371 ------------------a~~l~nLa~~~~~~g~~~eA~~~~~~Al~  399 (429)
T 3qwp_A          371 ------------------GVQVMKVGKLQLHQGMFPQAMKNLRLAFD  399 (429)
T ss_dssp             ------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             ------------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence                              34567777778888888888888877764

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=97.27  E-value=0.00047  Score=52.08  Aligned_cols=83  Identities=10%  Similarity=-0.056  Sum_probs=65.5

Q ss_pred             hcCChhHHHHHhccCCC-------C----ChhHHHHHHHHHhhcCChhHHHHHHHHhHh-----CCC-CCc-HHHHHHHH
Q 036068           18 NRGQVDIARQCFDQMPE-------R----DYVLWTAMIDGYLRVNRFREALTLFQEMQT-----SNI-MGD-EFTIVSIL   79 (178)
Q Consensus        18 ~~~~~~~a~~~~~~m~~-------~----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~-----~~~-~~~-~~~~~~ll   79 (178)
                      ..|++++|..++++..+       +    ...+++.|...|...|++++|..++++.++     .|- .|+ ..+++.|-
T Consensus       310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa  389 (433)
T 3qww_A          310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG  389 (433)
T ss_dssp             TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred             hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence            35788898888876531       2    456899999999999999999999999754     221 233 46789999


Q ss_pred             HHhccccchhhHHHHHHHHHH
Q 036068           80 TARANLRALDLGEWIKTYIDK  100 (178)
Q Consensus        80 ~~~~~~~~~~~a~~~~~~m~~  100 (178)
                      ..|...|++++|+.++++..+
T Consensus       390 ~~~~~qg~~~eA~~~~~~Al~  410 (433)
T 3qww_A          390 RLYMGLENKAAGEKALKKAIA  410 (433)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHhccCHHHHHHHHHHHHH
Confidence            999999999999999987654

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=97.20  E-value=0.0079  Score=35.25  Aligned_cols=85  Identities=12%  Similarity=0.014  Sum_probs=58.9

Q ss_pred             cHHHHHHHHHHhccccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHhcCChhhhccchhhHHHHHHHHHhcCChhHHH
Q 036068           71 DEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQKDKFSWTTMIVGLAISGNGDKAL  150 (178)
Q Consensus        71 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~li~~~~~~~~~~~a~  150 (178)
                      +...+..+-.++.+.|++++|...++...+..+. +...|..+-..|.+.|++++|.   ..|...+...-..++...+.
T Consensus         6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~---~~~~~al~l~~~~~~~~~~~   81 (100)
T 3ma5_A            6 DPFTRYALAQEHLKHDNASRALALFEELVETDPD-YVGTYYHLGKLYERLDRTDDAI---DTYAQGIEVAREEGTQKDLS   81 (100)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHH---HHHHHHHHHHHHHSCHHHHH
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHH---HHHHHHHhhhhcCCchhHHH
Confidence            5677888889999999999999999999987643 4566777777777777777663   34444554445555655555


Q ss_pred             HHHHHHHHc
Q 036068          151 DMFSQMLRA  159 (178)
Q Consensus       151 ~~~~~m~~~  159 (178)
                      ++-.-+...
T Consensus        82 ~l~~~l~~~   90 (100)
T 3ma5_A           82 ELQDAKLKA   90 (100)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHc
Confidence            554444443

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=97.16  E-value=0.0063  Score=38.13  Aligned_cols=110  Identities=10%  Similarity=-0.084  Sum_probs=62.2

Q ss_pred             ChhHHHHHhccCCCC-ChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHHhcc----ccchhhHHHHH
Q 036068           21 QVDIARQCFDQMPER-DYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARAN----LRALDLGEWIK   95 (178)
Q Consensus        21 ~~~~a~~~~~~m~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~   95 (178)
                      ++++|.+.|++.-+. +....  |-..|...+.+++|++.|++-.+.|   +...+..+-..|..    .+++++|.++|
T Consensus        10 d~~~A~~~~~~aa~~g~~~a~--lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~   84 (138)
T 1klx_A           10 DLKKAIQYYVKACELNEMFGC--LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAAQYY   84 (138)
T ss_dssp             HHHHHHHHHHHHHHTTCTTHH--HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHH
T ss_pred             CHHHHHHHHHHHHcCCCHhhh--HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHH
Confidence            455555555544321 22222  4444444455555666666655543   33444444444444    45566666666


Q ss_pred             HHHHHhCcccchHHHHHHHHHHHhcCChhhhccchhhHHHHHHHHHh----cCChhHHHHHHHHHHHcCC
Q 036068           96 TYIDKNKVKNDIFAGNALIDMYCICADVEKAQKDKFSWTTMIVGLAI----SGNGDKALDMFSQMLRASI  161 (178)
Q Consensus        96 ~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~g~  161 (178)
                      +...+.|                          +...+..|-..|..    .++.++|.+.|++..+.|.
T Consensus        85 ~~Aa~~g--------------------------~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~  128 (138)
T 1klx_A           85 SKACGLN--------------------------DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS  128 (138)
T ss_dssp             HHHHHTT--------------------------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred             HHHHcCC--------------------------CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence            5555443                          33445556666666    7899999999999988764

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=97.12  E-value=0.002  Score=41.65  Aligned_cols=112  Identities=18%  Similarity=0.041  Sum_probs=78.4

Q ss_pred             hcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHHhccccch----------hhHHHHHHHHHHhCcccchHHHHHHHHHHH
Q 036068           49 RVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANLRAL----------DLGEWIKTYIDKNKVKNDIFAGNALIDMYC  118 (178)
Q Consensus        49 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~----------~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~  118 (178)
                      +.+.+++|.+.+++..+.. +-+...|..+-.++.+.+++          ++|...|+..++..+. ....|..+-.+|.
T Consensus        14 r~~~feeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~-~~~A~~~LG~ay~   91 (158)
T 1zu2_A           14 RILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPK-KDEAVWCIGNAYT   91 (158)
T ss_dssp             HHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred             HHhHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHH
Confidence            4456788888888887765 34677777777777777665          4888888888887644 4566666666666


Q ss_pred             hcCChhhhccchhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhHHHHHHhhhh
Q 036068          119 ICADVEKAQKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACT  176 (178)
Q Consensus       119 ~~~~~~~a~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~a~~  176 (178)
                      ..|.+   .|+.         -...|++++|.+.|++.++.  .|+...|...+...-
T Consensus        92 ~lg~l---~P~~---------~~a~g~~~eA~~~~~kAl~l--~P~~~~y~~al~~~~  135 (158)
T 1zu2_A           92 SFAFL---TPDE---------TEAKHNFDLATQFFQQAVDE--QPDNTHYLKSLEMTA  135 (158)
T ss_dssp             HHHHH---CCCH---------HHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred             Hhccc---Ccch---------hhhhccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHH
Confidence            65543   1221         01137899999999999875  688888877766543

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=97.09  E-value=0.019  Score=46.20  Aligned_cols=76  Identities=14%  Similarity=-0.002  Sum_probs=49.3

Q ss_pred             HHHHHHHHhcCChhHHHHHhccCCCCChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHHhccccchh
Q 036068           10 TAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANLRALD   89 (178)
Q Consensus        10 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~   89 (178)
                      ..++..+-+.|.+++|.++.+.-.    .-    .......|++++|.++.+.+      .+...|..+...+.+.++++
T Consensus       633 ~~~~~~l~~~~~~~~a~~~~~~~~----~~----f~~~l~~~~~~~A~~~~~~~------~~~~~W~~la~~al~~~~~~  698 (814)
T 3mkq_A          633 TKIARFLEGQEYYEEALNISPDQD----QK----FELALKVGQLTLARDLLTDE------SAEMKWRALGDASLQRFNFK  698 (814)
T ss_dssp             HHHHHHHHHTTCHHHHHHHCCCHH----HH----HHHHHHHTCHHHHHHHHTTC------CCHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHhCCChHHheecCCCcc----hh----eehhhhcCCHHHHHHHHHhh------CcHhHHHHHHHHHHHcCCHH
Confidence            667777788888888887764311    11    22334567777777665443      34567777777777777777


Q ss_pred             hHHHHHHHHH
Q 036068           90 LGEWIKTYID   99 (178)
Q Consensus        90 ~a~~~~~~m~   99 (178)
                      .|++.|..+.
T Consensus       699 ~A~~~y~~~~  708 (814)
T 3mkq_A          699 LAIEAFTNAH  708 (814)
T ss_dssp             HHHHHHHHHT
T ss_pred             HHHHHHHHcc
Confidence            7777776653

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=97.03  E-value=0.0057  Score=49.19  Aligned_cols=46  Identities=24%  Similarity=0.395  Sum_probs=27.5

Q ss_pred             HHhcCChhHHHHHhccCCCCChhHHHHHHHHHhhcCChhHHHHHHHHh
Q 036068           16 YINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEM   63 (178)
Q Consensus        16 ~~~~~~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m   63 (178)
                      ....|+++.|.++.+.+.  +...|..|-..+.+.++++.|.++|.++
T Consensus       662 ~l~~~~~~~A~~~~~~~~--~~~~W~~la~~al~~~~~~~A~~~y~~~  707 (814)
T 3mkq_A          662 ALKVGQLTLARDLLTDES--AEMKWRALGDASLQRFNFKLAIEAFTNA  707 (814)
T ss_dssp             HHHHTCHHHHHHHHTTCC--CHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             hhhcCCHHHHHHHHHhhC--cHhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence            345566666666665553  3456666666666666666666666654

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=96.96  E-value=0.064  Score=39.30  Aligned_cols=153  Identities=9%  Similarity=0.007  Sum_probs=107.9

Q ss_pred             HHHHHHHHHhcCChhHHHHHhccCCC---CChhHHHHHHHHHhhcC-ChhHHHHHHHHhHhCCCCCcHHHHHHHHHHhcc
Q 036068            9 WTAIVSRYINRGQVDIARQCFDQMPE---RDYVLWTAMIDGYLRVN-RFREALTLFQEMQTSNIMGDEFTIVSILTARAN   84 (178)
Q Consensus         9 ~~~li~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~-~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~   84 (178)
                      ++.+-....+.+.-++|+++++++..   .+...|+.--..+...| .+++++++++.+....-+ +..+|+---.++.+
T Consensus        57 ~~~~r~~~~~~e~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPK-ny~aW~hR~wlL~~  135 (349)
T 3q7a_A           57 MDYFRAIAAKEEKSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLK-SYQVWHHRLLLLDR  135 (349)
T ss_dssp             HHHHHHHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCC-CHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHH
Confidence            34434444445555689999998864   36667777666677777 599999999999887633 55666655555544


Q ss_pred             c-c-chhhHHHHHHHHHHhCcccchHHHHHHHHHHHhcCChh--------hhc-----------cchhhHHHHHHHHHhc
Q 036068           85 L-R-ALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVE--------KAQ-----------KDKFSWTTMIVGLAIS  143 (178)
Q Consensus        85 ~-~-~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~--------~a~-----------~~~~~~~~li~~~~~~  143 (178)
                      . + +++++.++++.+.+... .+...|+.--..+.+.|.++        ++.           .|...|+.....+.+.
T Consensus       136 l~~~~~~~EL~~~~k~L~~dp-kNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N~SAW~~R~~lL~~l  214 (349)
T 3q7a_A          136 ISPQDPVSEIEYIHGSLLPDP-KNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRNNSAWGWRWYLRVSR  214 (349)
T ss_dssp             HCCSCCHHHHHHHHHHTSSCT-TCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTTS
T ss_pred             hcCCChHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc
Confidence            4 5 78899999999988764 36788887666666655555        333           5888899888888887


Q ss_pred             CC-------hhHHHHHHHHHHHcCCCCCh
Q 036068          144 GN-------GDKALDMFSQMLRASIKPDE  165 (178)
Q Consensus       144 ~~-------~~~a~~~~~~m~~~g~~p~~  165 (178)
                      ++       ++++++.+++.+..  .|+.
T Consensus       215 ~~~~~~~~~~~eELe~~~~aI~~--~P~n  241 (349)
T 3q7a_A          215 PGAETSSRSLQDELIYILKSIHL--IPHN  241 (349)
T ss_dssp             TTCCCCHHHHHHHHHHHHHHHHH--CTTC
T ss_pred             cccccchHHHHHHHHHHHHHHHh--CCCC
Confidence            76       68899999888864  4544

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=96.85  E-value=0.084  Score=41.28  Aligned_cols=145  Identities=10%  Similarity=0.009  Sum_probs=105.1

Q ss_pred             HhcCCh-hHHHHHhccCCC--C-ChhHHHHHHHHHhhcCC----------hhHHHHHHHHhHhCCCCCcHHHHHHHHHHh
Q 036068           17 INRGQV-DIARQCFDQMPE--R-DYVLWTAMIDGYLRVNR----------FREALTLFQEMQTSNIMGDEFTIVSILTAR   82 (178)
Q Consensus        17 ~~~~~~-~~a~~~~~~m~~--~-~~~~~~~li~~~~~~~~----------~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~   82 (178)
                      .+.|.+ ++|.+.++++..  | +...|+.-=..+.+.|+          +++++++++++.+..-+ +..+|.----++
T Consensus        39 ~~~~~~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK-~y~aW~hR~w~l  117 (567)
T 1dce_A           39 RQAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCWLL  117 (567)
T ss_dssp             HHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred             HHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHH
Confidence            344444 567888887764  3 55667665555555555          89999999999887533 566776666666


Q ss_pred             cccc--chhhHHHHHHHHHHhCcccchHHHHHHHHHHHhcC-Chhhhc-----------cchhhHHHHHHHHHhc-----
Q 036068           83 ANLR--ALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICA-DVEKAQ-----------KDKFSWTTMIVGLAIS-----  143 (178)
Q Consensus        83 ~~~~--~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~-~~~~a~-----------~~~~~~~~li~~~~~~-----  143 (178)
                      .+.+  +++++.+.++.+.+.... +.+.|+.--..+.+.| .++++.           .|...|+.....+.+.     
T Consensus       118 ~~l~~~~~~~el~~~~k~l~~d~~-N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~  196 (567)
T 1dce_A          118 SRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPD  196 (567)
T ss_dssp             HTCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCC
T ss_pred             HHcccccHHHHHHHHHHHHhhccc-cccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhccccc
Confidence            7777  669999999999998754 6888988888888888 666554           4788888877776663     


Q ss_pred             ---------CChhHHHHHHHHHHHcCCCCCh
Q 036068          144 ---------GNGDKALDMFSQMLRASIKPDE  165 (178)
Q Consensus       144 ---------~~~~~a~~~~~~m~~~g~~p~~  165 (178)
                               +.++++++++++....  .|+.
T Consensus       197 ~~~~~~~~~~~~~eel~~~~~ai~~--~P~~  225 (567)
T 1dce_A          197 SGPQGRLPENVLLKELELVQNAFFT--DPND  225 (567)
T ss_dssp             SSSCCSSCHHHHHHHHHHHHHHHHH--CSSC
T ss_pred             ccccccccHHHHHHHHHHHHHHHhh--CCCC
Confidence                     5578999999988864  4543

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=96.84  E-value=0.016  Score=33.45  Aligned_cols=57  Identities=9%  Similarity=-0.066  Sum_probs=33.9

Q ss_pred             HHHhhcCChhHHHHHHHHhHhCCCCCcHH-HHHHHHHHhccccchhhHHHHHHHHHHhC
Q 036068           45 DGYLRVNRFREALTLFQEMQTSNIMGDEF-TIVSILTARANLRALDLGEWIKTYIDKNK  102 (178)
Q Consensus        45 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~-~~~~ll~~~~~~~~~~~a~~~~~~m~~~~  102 (178)
                      ..+.+.|++++|...|++..+.. +.+.. .+..+-.++.+.|++++|.+.++...+..
T Consensus         8 ~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~   65 (99)
T 2kc7_A            8 KELINQGDIENALQALEEFLQTE-PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELN   65 (99)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence            34555666666666666665543 12334 55566666666666666666666666554

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=96.77  E-value=0.051  Score=39.50  Aligned_cols=140  Identities=9%  Similarity=-0.006  Sum_probs=99.5

Q ss_pred             hhHHHHHhccCCC---CChhHHHHHHHHHhhcC--ChhHHHHHHHHhHhCCCCCcHHHHHHHHHHhccccc-hhhHHHHH
Q 036068           22 VDIARQCFDQMPE---RDYVLWTAMIDGYLRVN--RFREALTLFQEMQTSNIMGDEFTIVSILTARANLRA-LDLGEWIK   95 (178)
Q Consensus        22 ~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~--~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~-~~~a~~~~   95 (178)
                      +++++.+++.+..   ++..+|+.--..+.+.+  .+++++++++++.+... -|...|+----++.+.|. ++++.+.+
T Consensus        90 l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dp-rNy~AW~~R~~vl~~l~~~~~eel~~~  168 (331)
T 3dss_A           90 VKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADE-RNFHCWDYRRFVAAQAAVAPAEELAFT  168 (331)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhCcCHHHHHHHH
Confidence            5677777777653   47788887777777777  48899999999988763 366777666666666677 58899999


Q ss_pred             HHHHHhCcccchHHHHHHHHHHHhcC--------------Chhhhc-----------cchhhHHHHHHHHHhc-------
Q 036068           96 TYIDKNKVKNDIFAGNALIDMYCICA--------------DVEKAQ-----------KDKFSWTTMIVGLAIS-------  143 (178)
Q Consensus        96 ~~m~~~~~~~~~~~~~~ll~~~~~~~--------------~~~~a~-----------~~~~~~~~li~~~~~~-------  143 (178)
                      +.+++..+. +...|+..-..+.+.+              .++++.           .|...|+-+--.+.+.       
T Consensus       169 ~~~I~~~p~-N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~~  247 (331)
T 3dss_A          169 DSLITRNFS-NYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELS  247 (331)
T ss_dssp             HHHHHHCSC-CHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGCC
T ss_pred             HHHHHHCCC-CHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccccc
Confidence            999887753 6777887766666552              233332           4778887665555554       


Q ss_pred             ----CChhHHHHHHHHHHHcCCCCCh
Q 036068          144 ----GNGDKALDMFSQMLRASIKPDE  165 (178)
Q Consensus       144 ----~~~~~a~~~~~~m~~~g~~p~~  165 (178)
                          +.++++++.++++.+.  .||.
T Consensus       248 ~~~~~~l~~el~~~~elle~--~pd~  271 (331)
T 3dss_A          248 VEKSTVLQSELESCKELQEL--EPEN  271 (331)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH--CTTC
T ss_pred             hHHHHHHHHHHHHHHHHHhh--Cccc
Confidence                4578999999999875  5765

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=96.55  E-value=0.13  Score=37.35  Aligned_cols=153  Identities=12%  Similarity=-0.003  Sum_probs=106.6

Q ss_pred             CcchhHHHHHHHHHHhcC--ChhHHHHHhccCCC---CChhHHHHHHHHHhhcCC-hhHHHHHHHHhHhCCCCCcHHHHH
Q 036068            3 NKDVISWTAIVSRYINRG--QVDIARQCFDQMPE---RDYVLWTAMIDGYLRVNR-FREALTLFQEMQTSNIMGDEFTIV   76 (178)
Q Consensus         3 ~p~~~~~~~li~~~~~~~--~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~-~~~a~~~~~~m~~~~~~~~~~~~~   76 (178)
                      +.+..+|+.--..+.+.|  ++++++++++++.+   .|...|+.--..+...|. ++++++.++++.+... -|...|+
T Consensus       105 PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p-~N~SAW~  183 (331)
T 3dss_A          105 PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNF-SNYSSWH  183 (331)
T ss_dssp             TTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCS-CCHHHHH
T ss_pred             CCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCC-CCHHHHH
Confidence            356677887777777777  48999999998864   588888887777778887 5899999999988764 4777776


Q ss_pred             HHHHHhccc--------------cchhhHHHHHHHHHHhCcccchHHHHHHHHHHHhc-C----------Chhhhc----
Q 036068           77 SILTARANL--------------RALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC-A----------DVEKAQ----  127 (178)
Q Consensus        77 ~ll~~~~~~--------------~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~-~----------~~~~a~----  127 (178)
                      -....+.+.              +.++++.+.+.......+ -+...|+-+-..+.+. |          .++++.    
T Consensus       184 ~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P-~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~  262 (331)
T 3dss_A          184 YRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDP-NDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCK  262 (331)
T ss_dssp             HHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHH
Confidence            555554433              457788888888887764 4788888666666555 2          122222    


Q ss_pred             ------cchhhHHHHHH-----HHHhcCChhHHHHHHHHHHH
Q 036068          128 ------KDKFSWTTMIV-----GLAISGNGDKALDMFSQMLR  158 (178)
Q Consensus       128 ------~~~~~~~~li~-----~~~~~~~~~~a~~~~~~m~~  158 (178)
                            ||. .|+.+-.     +....|..+++...+.++.+
T Consensus       263 elle~~pd~-~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~  303 (331)
T 3dss_A          263 ELQELEPEN-KWCLLTIILLMRALDPLLYEKETLQYFSTLKA  303 (331)
T ss_dssp             HHHHHCTTC-HHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHH
T ss_pred             HHHhhCccc-chHHHHHHHHHHhhcccccHHHHHHHHHHHHH
Confidence                  543 4543222     22246778888999999875

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=96.53  E-value=0.15  Score=39.11  Aligned_cols=149  Identities=14%  Similarity=0.064  Sum_probs=97.5

Q ss_pred             hhHHHHHHHHHHhcCChhHHHHHhccCCC-C-----------------------------------------ChhHHHHH
Q 036068            6 VISWTAIVSRYINRGQVDIARQCFDQMPE-R-----------------------------------------DYVLWTAM   43 (178)
Q Consensus         6 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~-~-----------------------------------------~~~~~~~l   43 (178)
                      ...|-..+..+.+.|+.+.|..++++... |                                         ....|-..
T Consensus       213 ~~lW~~ya~~~~~~~~~~~ar~i~erAi~~P~~~~l~~~y~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y  292 (493)
T 2uy1_A          213 EEVYFFYSEYLIGIGQKEKAKKVVERGIEMSDGMFLSLYYGLVMDEEAVYGDLKRKYSMGEAESAEKVFSKELDLLRINH  292 (493)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHTTCTHHHHHHHHHTC----------CHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCcHHHHHHHHhhcchhHHHHHHHHHHHhhccchhhhhcccccHHHHHHH
Confidence            45566666677777777777777664210 1                                         01223344


Q ss_pred             HHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHH--HHHHHhccccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHhcC
Q 036068           44 IDGYLRVNRFREALTLFQEMQTSNIMGDEFTIV--SILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICA  121 (178)
Q Consensus        44 i~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~--~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~  121 (178)
                      +....+.++.+.|..+|++. +.. ..+...|.  +.+.... .++.+.|..+|+...+.... ++..|...++...+.|
T Consensus       293 ~~~~~r~~~~~~AR~i~~~A-~~~-~~~~~v~i~~A~lE~~~-~~d~~~ar~ife~al~~~~~-~~~~~~~yid~e~~~~  368 (493)
T 2uy1_A          293 LNYVLKKRGLELFRKLFIEL-GNE-GVGPHVFIYCAFIEYYA-TGSRATPYNIFSSGLLKHPD-STLLKEEFFLFLLRIG  368 (493)
T ss_dssp             HHHHHHHHCHHHHHHHHHHH-TTS-CCCHHHHHHHHHHHHHH-HCCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHT
T ss_pred             HHHHHHcCCHHHHHHHHHHh-hCC-CCChHHHHHHHHHHHHH-CCChHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcC
Confidence            44444567789999999988 321 12334443  2222222 23689999999988876432 3555666777777888


Q ss_pred             Chhhhc-------cchhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 036068          122 DVEKAQ-------KDKFSWTTMIVGLAISGNGDKALDMFSQMLR  158 (178)
Q Consensus       122 ~~~~a~-------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~  158 (178)
                      +.+.|.       .....|...+.--...|+.+.+..++++..+
T Consensus       369 ~~~~aR~l~er~~k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~  412 (493)
T 2uy1_A          369 DEENARALFKRLEKTSRMWDSMIEYEFMVGSMELFRELVDQKMD  412 (493)
T ss_dssp             CHHHHHHHHHHSCCBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            887765       3577788888877888999999999988875

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=96.47  E-value=0.0039  Score=36.16  Aligned_cols=56  Identities=20%  Similarity=0.344  Sum_probs=47.9

Q ss_pred             HHHHHHhcCChhHHHHHhccCCC--C-Chh-HHHHHHHHHhhcCChhHHHHHHHHhHhCC
Q 036068           12 IVSRYINRGQVDIARQCFDQMPE--R-DYV-LWTAMIDGYLRVNRFREALTLFQEMQTSN   67 (178)
Q Consensus        12 li~~~~~~~~~~~a~~~~~~m~~--~-~~~-~~~~li~~~~~~~~~~~a~~~~~~m~~~~   67 (178)
                      ....+.+.|++++|.+.|++..+  | +.. .|..+-..|...|++++|.+.|++..+..
T Consensus         6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~   65 (99)
T 2kc7_A            6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELN   65 (99)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence            45678899999999999998753  3 566 88888899999999999999999988764

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=96.22  E-value=0.01  Score=38.36  Aligned_cols=96  Identities=17%  Similarity=0.041  Sum_probs=69.5

Q ss_pred             HhcCChhHHHHHhccCCC---CChhHHHHHHHHHhhcCCh----------hHHHHHHHHhHhCCCCCcHHHHHHHHHHhc
Q 036068           17 INRGQVDIARQCFDQMPE---RDYVLWTAMIDGYLRVNRF----------REALTLFQEMQTSNIMGDEFTIVSILTARA   83 (178)
Q Consensus        17 ~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~~----------~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~   83 (178)
                      .+.+.+++|.+.+++..+   .+...|..+-.++.+.+++          ++|+..|++..+.. +-+...|..+-.+|.
T Consensus        13 ~r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ld-P~~~~A~~~LG~ay~   91 (158)
T 1zu2_A           13 DRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID-PKKDEAVWCIGNAYT   91 (158)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred             HHHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHH
Confidence            455667888888876642   3777787777777777654          59999999988865 225678888888888


Q ss_pred             ccc-----------chhhHHHHHHHHHHhCcccchHHHHHHHH
Q 036068           84 NLR-----------ALDLGEWIKTYIDKNKVKNDIFAGNALID  115 (178)
Q Consensus        84 ~~~-----------~~~~a~~~~~~m~~~~~~~~~~~~~~ll~  115 (178)
                      +.|           ++++|.+.|+...+..  |+...|...+.
T Consensus        92 ~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~--P~~~~y~~al~  132 (158)
T 1zu2_A           92 SFAFLTPDETEAKHNFDLATQFFQQAVDEQ--PDNTHYLKSLE  132 (158)
T ss_dssp             HHHHHCCCHHHHHHHHHHHHHHHHHHHHHC--TTCHHHHHHHH
T ss_pred             HhcccCcchhhhhccHHHHHHHHHHHHHhC--CCCHHHHHHHH
Confidence            764           8999999999988864  44444444433

>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}

Probab=96.21  E-value=0.088  Score=34.58  Aligned_cols=98  Identities=9%  Similarity=0.084  Sum_probs=65.7

Q ss_pred             HHHHHhcCChhHHHHHhccCCCCChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHHhccccchhhHH
Q 036068           13 VSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANLRALDLGE   92 (178)
Q Consensus        13 i~~~~~~~~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~   92 (178)
                      .....+.|+++.|.++.+++  .+...|..|-....+.|+++-|.++|++...         +..+...|.-.|+.+...
T Consensus        12 F~LAL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~   80 (177)
T 3mkq_B           12 FDLALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLS   80 (177)
T ss_dssp             HHHHHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHH
T ss_pred             HHHHHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHH
Confidence            34456789999998888776  4677899999999999999999998888543         233444445556665555


Q ss_pred             HHHHHHHHhCcccchHHHHHHHHHHHhcCChhhhc
Q 036068           93 WIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ  127 (178)
Q Consensus        93 ~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~  127 (178)
                      .+-+.-...| .     ++.....+.-.|+++++.
T Consensus        81 kla~iA~~~g-~-----~n~af~~~l~lGdv~~~i  109 (177)
T 3mkq_B           81 KMQNIAQTRE-D-----FGSMLLNTFYNNSTKERS  109 (177)
T ss_dssp             HHHHHHHHTT-C-----HHHHHHHHHHHTCHHHHH
T ss_pred             HHHHHHHHCc-c-----HHHHHHHHHHcCCHHHHH
Confidence            5544444443 2     445555566677777654

>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1

Probab=96.19  E-value=0.082  Score=33.31  Aligned_cols=69  Identities=12%  Similarity=-0.089  Sum_probs=59.3

Q ss_pred             ChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHHhccccchhhHHHHHHHHHHhCccc
Q 036068           36 DYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKN  105 (178)
Q Consensus        36 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~  105 (178)
                      +...++..+..+...|.-++-.+++..+.. +..|++.....+..+|.+.|+..++.+++.+.-+.|++-
T Consensus        90 ~se~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~kE  158 (172)
T 1wy6_A           90 LNEHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACKKGEKE  158 (172)
T ss_dssp             CCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHH
T ss_pred             hHHHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhHH
Confidence            667788899999999999999999999654 347888999999999999999999999999999998753

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=96.12  E-value=0.035  Score=34.63  Aligned_cols=90  Identities=9%  Similarity=-0.105  Sum_probs=72.2

Q ss_pred             HHHHHHhcCChhHHHHHhccCCC-CChhHHHHHHHHHhh----cCChhHHHHHHHHhHhCCCCCcHHHHHHHHHHhcc--
Q 036068           12 IVSRYINRGQVDIARQCFDQMPE-RDYVLWTAMIDGYLR----VNRFREALTLFQEMQTSNIMGDEFTIVSILTARAN--   84 (178)
Q Consensus        12 li~~~~~~~~~~~a~~~~~~m~~-~~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~--   84 (178)
                      +-..|...+.+++|.+.|++.-+ .+...+..|-..|..    .++.++|++.|++-.+.|   +...+..+-..|..  
T Consensus        31 lg~~y~~g~~~~~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~  107 (138)
T 1klx_A           31 LSLVSNSQINKQKLFQYLSKACELNSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLN---DQDGCLILGYKQYAGK  107 (138)
T ss_dssp             HHHHTCTTSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTS
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcCC---CHHHHHHHHHHHHCCC
Confidence            55556666778888888887654 477788888888887    789999999999998876   45666777777777  


Q ss_pred             --ccchhhHHHHHHHHHHhCcc
Q 036068           85 --LRALDLGEWIKTYIDKNKVK  104 (178)
Q Consensus        85 --~~~~~~a~~~~~~m~~~~~~  104 (178)
                        .+++++|.+.++...+.|..
T Consensus       108 g~~~d~~~A~~~~~~Aa~~g~~  129 (138)
T 1klx_A          108 GVVKNEKQAVKTFEKACRLGSE  129 (138)
T ss_dssp             SSCCCHHHHHHHHHHHHHTTCH
T ss_pred             CCCcCHHHHHHHHHHHHHCCCH
Confidence              78999999999999988754

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=96.09  E-value=0.045  Score=42.81  Aligned_cols=114  Identities=8%  Similarity=-0.061  Sum_probs=88.2

Q ss_pred             chhHHHHHHHHHHhcCC----------hhHHHHHhccCCC---CChhHHHHHHHHHhhcC--ChhHHHHHHHHhHhCCCC
Q 036068            5 DVISWTAIVSRYINRGQ----------VDIARQCFDQMPE---RDYVLWTAMIDGYLRVN--RFREALTLFQEMQTSNIM   69 (178)
Q Consensus         5 ~~~~~~~li~~~~~~~~----------~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~--~~~~a~~~~~~m~~~~~~   69 (178)
                      +..+|+.--..+.+.|+          +++++++++++.+   ++..+|+.--..+.+.+  ++++++++++++.+....
T Consensus        62 ~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d~~  141 (567)
T 1dce_A           62 FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADER  141 (567)
T ss_dssp             CHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTT
T ss_pred             hHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccccHHHHHHHHHHHHhhccc
Confidence            34457766666666666          8899999998764   47888888888888888  679999999999987643


Q ss_pred             CcHHHHHHHHHHhcccc-chhhHHHHHHHHHHhCcccchHHHHHHHHHHHhc
Q 036068           70 GDEFTIVSILTARANLR-ALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC  120 (178)
Q Consensus        70 ~~~~~~~~ll~~~~~~~-~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~  120 (178)
                       +...|+---.++.+.+ .++++.+.++.+++..+. +...|+..-..+.+.
T Consensus       142 -N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~-n~saW~~r~~ll~~l  191 (567)
T 1dce_A          142 -NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQL  191 (567)
T ss_dssp             -CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCC-CHHHHHHHHHHHHHH
T ss_pred             -cccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCC-CccHHHHHHHHHHhh
Confidence             7777877766777777 788899999888887643 678888887777764

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=96.06  E-value=0.056  Score=31.40  Aligned_cols=48  Identities=8%  Similarity=-0.119  Sum_probs=21.6

Q ss_pred             hhHHHHHHHHhHhCCCCCcHHHHHHHHHHhccccchhhHHHHHHHHHHh
Q 036068           53 FREALTLFQEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKN  101 (178)
Q Consensus        53 ~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~  101 (178)
                      .++|..+|++.++.. +-+......+-..+.+.|++++|...|+.+.+.
T Consensus        25 ~~~A~~~l~~AL~~d-p~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~   72 (93)
T 3bee_A           25 TDEVSLLLEQALQLE-PYNEAALSLIANDHFISFRFQEAIDTWVLLLDS   72 (93)
T ss_dssp             CHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred             CHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            344555555544432 112333344444444555555555555554443

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=95.89  E-value=0.12  Score=30.43  Aligned_cols=63  Identities=5%  Similarity=-0.091  Sum_probs=40.3

Q ss_pred             HHHHHHHhhcCChhHHHHHHHHhHhC------CCCCcHHHHHHHHHHhccccchhhHHHHHHHHHHhCc
Q 036068           41 TAMIDGYLRVNRFREALTLFQEMQTS------NIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKV  103 (178)
Q Consensus        41 ~~li~~~~~~~~~~~a~~~~~~m~~~------~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~  103 (178)
                      -.|-..+.+.|+++.|...|++..+.      .-.+....+..+..++.+.|++++|...++...+..+
T Consensus         9 ~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P   77 (104)
T 2v5f_A            9 FELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDP   77 (104)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCC
Confidence            34555666667777777766665432      1133556677777777777777777777777766543

>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...

Probab=95.85  E-value=0.13  Score=30.46  Aligned_cols=64  Identities=11%  Similarity=-0.020  Sum_probs=52.5

Q ss_pred             ChhHHHHHHHHhHhCCCCCcHHHHHHHHHHhccccchhhHHHHHHHHHHhCcccchHHHHHHHHH
Q 036068           52 RFREALTLFQEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDM  116 (178)
Q Consensus        52 ~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~  116 (178)
                      +.=+..+.++.+....+.|+.....+.+++|.|.+++..|.++++.++..- .....+|..+++-
T Consensus        25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~-~~~~~iY~~~lqE   88 (109)
T 1v54_E           25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVIQE   88 (109)
T ss_dssp             CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHHHH
T ss_pred             cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh-cCchhhHHHHHHH
Confidence            445677888888999999999999999999999999999999999887543 2235567777764

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=95.84  E-value=0.036  Score=32.21  Aligned_cols=65  Identities=14%  Similarity=0.108  Sum_probs=53.4

Q ss_pred             CcchhHHHHHHHHHHhcCC---hhHHHHHhccCCC---CChhHHHHHHHHHhhcCChhHHHHHHHHhHhCC
Q 036068            3 NKDVISWTAIVSRYINRGQ---VDIARQCFDQMPE---RDYVLWTAMIDGYLRVNRFREALTLFQEMQTSN   67 (178)
Q Consensus         3 ~p~~~~~~~li~~~~~~~~---~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~   67 (178)
                      ++|+..+..+..++...++   .++|..++++..+   .++.....+-..+.+.|++++|...|+++.+..
T Consensus         3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~   73 (93)
T 3bee_A            3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSN   73 (93)
T ss_dssp             CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCC
T ss_pred             CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence            4677778888888865554   7899999998763   377788888889999999999999999998875

>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}

Probab=95.83  E-value=0.71  Score=39.25  Aligned_cols=137  Identities=13%  Similarity=0.086  Sum_probs=89.2

Q ss_pred             HHHHHHHHhcCChhHHHHHhccCCCCChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCC--------------------
Q 036068           10 TAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIM--------------------   69 (178)
Q Consensus        10 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~--------------------   69 (178)
                      ..++..+.+.+.++.+.++....+.....+| .+-.+|...|++++|.++|++.-. |+.                    
T Consensus       816 ~~l~~~l~~~~~~~~~~~l~~~~~~~~~~~y-l~g~~~L~~ge~~~A~~~F~kaa~-~~~~~~~l~~~~~~~~~~~~~~~  893 (1139)
T 4fhn_B          816 TELVEKLFLFKQYNACMQLIGWLNSDPIAVY-LKALIYLKSKEAVKAVRCFKTTSL-VLYSHTSQFAVLREFQEIAEKYH  893 (1139)
T ss_dssp             HHHHHHHHHHSCTTHHHHHHHHSCCCHHHHH-HHHHHHHHTTCHHHHHHHHHTCCC-SCTTCCCSCSSHHHHHHHHHTTT
T ss_pred             HHHHHHHHHhhhHHHHHHHhhhccCCcHHHH-HHHHHHHhcCCHHHHHHHHHHHhh-hhcccchhhhhhccccccccccc
Confidence            3466778888888888888777765433333 455678889999999999977411 110                    


Q ss_pred             ---CcHHHHHHHHHHhccccchhhHHHHHHHHHHhCcccc----hHHHHHHHHHHHhcCChhhhc------cc----hhh
Q 036068           70 ---GDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKND----IFAGNALIDMYCICADVEKAQ------KD----KFS  132 (178)
Q Consensus        70 ---~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~----~~~~~~ll~~~~~~~~~~~a~------~~----~~~  132 (178)
                         .-..-|.-++..+.+.+.++.+.++-...++....-+    ...|..+...+...|++++|.      ||    ...
T Consensus       894 ~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~r~~c  973 (1139)
T 4fhn_B          894 HQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPLKKSC  973 (1139)
T ss_dssp             SCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSSCHHH
T ss_pred             ccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHHHHHH
Confidence               0112356677777788888888777666555432111    236788889999999999986      22    344


Q ss_pred             HHHHHHHHHhcCChhH
Q 036068          133 WTTMIVGLAISGNGDK  148 (178)
Q Consensus       133 ~~~li~~~~~~~~~~~  148 (178)
                      ...|+..+|..|..+.
T Consensus       974 Lr~LV~~lce~~~~~~  989 (1139)
T 4fhn_B          974 LLDFVNQLTKQGKINQ  989 (1139)
T ss_dssp             HHHHHHHHHHHCCHHH
T ss_pred             HHHHHHHHHhCCChhh
Confidence            5566666666655433

>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A

Probab=95.79  E-value=0.00056  Score=52.18  Aligned_cols=135  Identities=11%  Similarity=0.064  Sum_probs=88.1

Q ss_pred             hhHHHHHHHHHHhcCChhHHHHHhccCCCCChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHHhccc
Q 036068            6 VISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANL   85 (178)
Q Consensus         6 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~   85 (178)
                      +.+|+.|-.+..+.+++.+|++-|-  +..|+..|..+|.+..+.|.+++-...++-.++..-.|  ..=+.|+-+|++.
T Consensus        54 p~VWs~LgkAqL~~~~v~eAIdsyI--kA~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~ke~--~IDteLi~ayAk~  129 (624)
T 3lvg_A           54 PAVWSQLAKAQLQKGMVKEAIDSYI--KADDPSSYMEVVQAANTSGNWEELVKYLQMARKKARES--YVETELIFALAKT  129 (624)
T ss_dssp             CCCSSSHHHHTTTSSSCTTTTTSSC--CCSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCCST--TTTHHHHHHHHTS
T ss_pred             ccHHHHHHHHHHccCchHHHHHHHH--hCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhccc--ccHHHHHHHHHhh
Confidence            3457777788888887777776553  34566778888999899999888887666554443333  3335688889888


Q ss_pred             cchhhHHHHHHHHHHhCcccchHHHHHHHHHHHhcCChhhhc--------------------------------cchhhH
Q 036068           86 RALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ--------------------------------KDKFSW  133 (178)
Q Consensus        86 ~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~--------------------------------~~~~~~  133 (178)
                      ++..+.++++.       .|+..-...+-+-+...|.++.|.                                .++.||
T Consensus       130 ~rL~elEefl~-------~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~ktW  202 (624)
T 3lvg_A          130 NRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTW  202 (624)
T ss_dssp             CSSSTTTSTTS-------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCSH
T ss_pred             CcHHHHHHHHc-------CCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhHH
Confidence            88776555541       133333334444444444444443                                478888


Q ss_pred             HHHHHHHHhcCChhHHHH
Q 036068          134 TTMIVGLAISGNGDKALD  151 (178)
Q Consensus       134 ~~li~~~~~~~~~~~a~~  151 (178)
                      ..+-.+|+..+++..|.-
T Consensus       203 KeV~~ACvd~~EfrLAqi  220 (624)
T 3lvg_A          203 KEVCFACVDGKEFRLAQM  220 (624)
T ss_dssp             HHHTHHHHHSCTTTTTTH
T ss_pred             HHHHHHHhCchHHHHHHH
Confidence            888888888877766653

>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A

Probab=95.74  E-value=0.16  Score=32.53  Aligned_cols=112  Identities=7%  Similarity=0.005  Sum_probs=78.3

Q ss_pred             CCcchhHHHHHHHHHHhcCCh------hHHHHHhccCCC---C----ChhHHHHHHH---HHhhcCChhHHHHHHHHhHh
Q 036068            2 KNKDVISWTAIVSRYINRGQV------DIARQCFDQMPE---R----DYVLWTAMID---GYLRVNRFREALTLFQEMQT   65 (178)
Q Consensus         2 ~~p~~~~~~~li~~~~~~~~~------~~a~~~~~~m~~---~----~~~~~~~li~---~~~~~~~~~~a~~~~~~m~~   65 (178)
                      .+-|..+|-..+...-+.|+.      +...++|++...   |    ....|--|--   .+...++.++|.++|+.+.+
T Consensus         9 ~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~   88 (161)
T 4h7y_A            9 MANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARA   88 (161)
T ss_dssp             -CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence            456788888888888888998      777777775431   1    2222222211   11234789999999999976


Q ss_pred             CCCCCcHHHHHHHHHHhccccchhhHHHHHHHHHHhCcccchHHHHHHHH
Q 036068           66 SNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALID  115 (178)
Q Consensus        66 ~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~  115 (178)
                      .+-.. +..|....+.=.+.|+++.|.+++..-+..+..| ...+...+.
T Consensus        89 ~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~-~~~le~a~~  136 (161)
T 4h7y_A           89 NCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVP-LEMLEIALR  136 (161)
T ss_dssp             HCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBC-HHHHHHHHH
T ss_pred             HhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCc-HHHHHHHHH
Confidence            65555 7777777777789999999999999999988776 344444444

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=95.23  E-value=0.32  Score=31.06  Aligned_cols=91  Identities=12%  Similarity=0.035  Sum_probs=60.2

Q ss_pred             ChhHHHHHHHHhHhCCCCCcHHHHHHHHHHhcccc---chhhHHHHHHHHHHhCcccchHHHHHHHHHHHhcCChhhhcc
Q 036068           52 RFREALTLFQEMQTSNIMGDEFTIVSILTARANLR---ALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQK  128 (178)
Q Consensus        52 ~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~---~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~  128 (178)
                      ....+.+-|.+....|. ++..+...+--++++.+   +.+++..+++.+.+.. .|+.                     
T Consensus        13 ~l~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~---------------------   69 (152)
T 1pc2_A           13 DLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEE---------------------   69 (152)
T ss_dssp             HHHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHH---------------------
T ss_pred             HHHHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-Cccc---------------------
Confidence            34566667777666654 67777777777888877   6778999998888865 2210                     


Q ss_pred             chhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhH
Q 036068          129 DKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVA  167 (178)
Q Consensus       129 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t  167 (178)
                      +...+-.|-.++.+.|++++|.++++++++.  .|+..-
T Consensus        70 ~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~i--eP~n~Q  106 (152)
T 1pc2_A           70 QRDYVFYLAVGNYRLKEYEKALKYVRGLLQT--EPQNNQ  106 (152)
T ss_dssp             HHHHHHHHHHHHHHTSCHHHHHHHHHHHHHH--CTTCHH
T ss_pred             hHHHHHHHHHHHHHccCHHHHHHHHHHHHhc--CCCCHH
Confidence            1122334555667788888888888888764  565433

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=95.10  E-value=0.17  Score=37.57  Aligned_cols=71  Identities=8%  Similarity=-0.078  Sum_probs=58.2

Q ss_pred             HHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHHhccccchhhHHHHHHHHHH-----hCcccchHHHHH
Q 036068           41 TAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDK-----NKVKNDIFAGNA  112 (178)
Q Consensus        41 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~-----~~~~~~~~~~~~  112 (178)
                      ..++..+...|+.+++...+..+.... +.+...+..+|.++.+.|+..+|.+.|+.+.+     .|++|++.+-..
T Consensus       175 ~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~l  250 (388)
T 2ff4_A          175 TAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRAL  250 (388)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHHH
Confidence            346677778999999999999887764 55788999999999999999999999987653     599998776433

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=95.01  E-value=0.74  Score=33.99  Aligned_cols=131  Identities=11%  Similarity=0.029  Sum_probs=81.1

Q ss_pred             ChhHHHHHHHHHhh--cC---ChhHHHHHHHHhHhCCCCCc-HHHHHHHHHHhc----ccc-chhhHHHHHHHHHH----
Q 036068           36 DYVLWTAMIDGYLR--VN---RFREALTLFQEMQTSNIMGD-EFTIVSILTARA----NLR-ALDLGEWIKTYIDK----  100 (178)
Q Consensus        36 ~~~~~~~li~~~~~--~~---~~~~a~~~~~~m~~~~~~~~-~~~~~~ll~~~~----~~~-~~~~a~~~~~~m~~----  100 (178)
                      +...|...+++...  .+   +..+|..+|++..+.  .|+ ...+..+.-++.    ... ..+....+-..+..    
T Consensus       193 ~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~l--DP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~  270 (372)
T 3ly7_A          193 RGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQS--SPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTL  270 (372)
T ss_dssp             SGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTC
T ss_pred             CHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhc
Confidence            77788888866543  22   357888999988776  455 233332222221    100 11111111111111    


Q ss_pred             hCcccchHHHHHHHHHHHhcCChhhhc----------cchhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhHHHH
Q 036068          101 NKVKNDIFAGNALIDMYCICADVEKAQ----------KDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVG  170 (178)
Q Consensus       101 ~~~~~~~~~~~~ll~~~~~~~~~~~a~----------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~  170 (178)
                      ..-+.++.++..+...+...|+++.|.          |+...|..+-..+.-.|++++|.+.|++....  .|...||..
T Consensus       271 ~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL--~P~~~t~~~  348 (372)
T 3ly7_A          271 PELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSWLNYVLLGKVYEMKGMNREAADAYLTAFNL--RPGANTLYW  348 (372)
T ss_dssp             GGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCSHHHHHH
T ss_pred             ccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCcChHHH
Confidence            122456777777777777779999887          56656666677788899999999999998865  587777654

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=94.76  E-value=0.25  Score=28.97  Aligned_cols=77  Identities=12%  Similarity=0.009  Sum_probs=52.6

Q ss_pred             CcHHHHHHHHHHhccccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHhcCChhhhccchhhHHHHHHHHHhcCChhHH
Q 036068           70 GDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQKDKFSWTTMIVGLAISGNGDKA  149 (178)
Q Consensus        70 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~li~~~~~~~~~~~a  149 (178)
                      .+..-+..+-..+.+.++++.|...++...+.-.+.+.                 ........+..|..++.+.|++++|
T Consensus         3 Lsa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~-----------------~~~~~~~i~~~L~~~~~~~g~~~~A   65 (104)
T 2v5f_A            3 LTAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEI-----------------STIDKVSVLDYLSYAVYQQGDLDKA   65 (104)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCC-----------------CSSCHHHHHHHHHHHHHHTTCHHHH
T ss_pred             CCHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCC-----------------CcccHHHHHHHHHHHHHHccCHHHH
Confidence            45667778888999999999999999887764211110                 0012344566777777788888888


Q ss_pred             HHHHHHHHHcCCCCCh
Q 036068          150 LDMFSQMLRASIKPDE  165 (178)
Q Consensus       150 ~~~~~~m~~~g~~p~~  165 (178)
                      ..++++..+.  .|+.
T Consensus        66 ~~~~~~al~l--~P~~   79 (104)
T 2v5f_A           66 LLLTKKLLEL--DPEH   79 (104)
T ss_dssp             HHHHHHHHHH--CTTC
T ss_pred             HHHHHHHHhc--CCCC
Confidence            8888887753  4554

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=94.60  E-value=0.22  Score=36.73  Aligned_cols=57  Identities=7%  Similarity=-0.238  Sum_probs=36.3

Q ss_pred             CCcHHHHHHHHHHhccccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHhcCChhhhc
Q 036068           69 MGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ  127 (178)
Q Consensus        69 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~  127 (178)
                      ..+..+|.++...+...|++++|...+++....+  |+...|..+-..+.-.|++++|.
T Consensus       274 ~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~  330 (372)
T 3ly7_A          274 NNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAA  330 (372)
T ss_dssp             TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHH
Confidence            4455666666555555577777777777776665  45555555556666677777765

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=94.59  E-value=0.23  Score=35.38  Aligned_cols=92  Identities=10%  Similarity=-0.049  Sum_probs=69.0

Q ss_pred             hHHHHHhccCCC--C---ChhHHHHHHHHHhhc-----CChhHHHHHHHHhHhCCCCCcHHHHHHHHHHhccc-cchhhH
Q 036068           23 DIARQCFDQMPE--R---DYVLWTAMIDGYLRV-----NRFREALTLFQEMQTSNIMGDEFTIVSILTARANL-RALDLG   91 (178)
Q Consensus        23 ~~a~~~~~~m~~--~---~~~~~~~li~~~~~~-----~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~-~~~~~a   91 (178)
                      ..|...+++..+  |   +-..|..|...|.+.     |+.++|.+.|++-++.+-.-+..++......+++. ++.+++
T Consensus       180 ~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a  259 (301)
T 3u64_A          180 HAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGF  259 (301)
T ss_dssp             HHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHH
T ss_pred             HHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHH
Confidence            345555554432  4   355888999999985     99999999999988865222477788899999885 999999


Q ss_pred             HHHHHHHHHhCcc--cchHHHHHHH
Q 036068           92 EWIKTYIDKNKVK--NDIFAGNALI  114 (178)
Q Consensus        92 ~~~~~~m~~~~~~--~~~~~~~~ll  114 (178)
                      .+.++...+..+.  |+....+.+-
T Consensus       260 ~~~L~kAL~a~p~~~P~~~lan~~~  284 (301)
T 3u64_A          260 DEALDRALAIDPESVPHNKLLVILS  284 (301)
T ss_dssp             HHHHHHHHHCCGGGCSSCHHHHHHH
T ss_pred             HHHHHHHHcCCCCCCCChhHHHHHH
Confidence            9999999998876  6665555443

>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}

Probab=94.48  E-value=0.49  Score=29.60  Aligned_cols=64  Identities=11%  Similarity=-0.020  Sum_probs=51.8

Q ss_pred             ChhHHHHHHHHhHhCCCCCcHHHHHHHHHHhccccchhhHHHHHHHHHHhCcccchHHHHHHHHH
Q 036068           52 RFREALTLFQEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDM  116 (178)
Q Consensus        52 ~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~  116 (178)
                      |.=+..+-++.+....+.|+.....+.+++|.+.+|+..|.++++.++..- .+...+|..+++-
T Consensus        68 D~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~-~~~~~iY~y~lqE  131 (152)
T 2y69_E           68 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVIQE  131 (152)
T ss_dssp             CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHHHH
T ss_pred             cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc-CCchhhHHHHHHH
Confidence            344567777888889999999999999999999999999999999887643 3335567777764

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=94.29  E-value=0.26  Score=37.75  Aligned_cols=113  Identities=7%  Similarity=0.083  Sum_probs=78.4

Q ss_pred             hHHHHHHHHHHhcCChhHHHHHhccCCCCC--hhHHH--HHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHHh
Q 036068            7 ISWTAIVSRYINRGQVDIARQCFDQMPERD--YVLWT--AMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTAR   82 (178)
Q Consensus         7 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~--~~~~~--~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~   82 (178)
                      ..|...++...+.+.++.|..+|++...|+  ...|-  +.+.... .++.+.|.++|+...+.- .-+...+...++..
T Consensus       287 ~lw~~y~~~~~r~~~~~~AR~i~~~A~~~~~~~~v~i~~A~lE~~~-~~d~~~ar~ife~al~~~-~~~~~~~~~yid~e  364 (493)
T 2uy1_A          287 LLRINHLNYVLKKRGLELFRKLFIELGNEGVGPHVFIYCAFIEYYA-TGSRATPYNIFSSGLLKH-PDSTLLKEEFFLFL  364 (493)
T ss_dssp             HHHHHHHHHHHHHHCHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHH-HCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHhhCCCCChHHHHHHHHHHHHH-CCChHHHHHHHHHHHHHC-CCCHHHHHHHHHHH
Confidence            567788888888899999999999884443  23332  2222222 236999999999987753 11234456677777


Q ss_pred             ccccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHhcCChhhh
Q 036068           83 ANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKA  126 (178)
Q Consensus        83 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a  126 (178)
                      .+.|+.+.|..+|+...     .+...|...+..-...|+.+.+
T Consensus       365 ~~~~~~~~aR~l~er~~-----k~~~lw~~~~~fE~~~G~~~~~  403 (493)
T 2uy1_A          365 LRIGDEENARALFKRLE-----KTSRMWDSMIEYEFMVGSMELF  403 (493)
T ss_dssp             HHHTCHHHHHHHHHHSC-----CBHHHHHHHHHHHHHHSCHHHH
T ss_pred             HHcCCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHCCCHHHH
Confidence            88899999999998862     2567777777776777776643

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=94.14  E-value=0.69  Score=37.48  Aligned_cols=114  Identities=11%  Similarity=-0.058  Sum_probs=69.3

Q ss_pred             HHHHHHHhhcCC-hhHHHHHHHHhHhCCCCCcHHHH--HHHHHHhccccc-hhhHHHHHHHHHHh------Cccc-ch--
Q 036068           41 TAMIDGYLRVNR-FREALTLFQEMQTSNIMGDEFTI--VSILTARANLRA-LDLGEWIKTYIDKN------KVKN-DI--  107 (178)
Q Consensus        41 ~~li~~~~~~~~-~~~a~~~~~~m~~~~~~~~~~~~--~~ll~~~~~~~~-~~~a~~~~~~m~~~------~~~~-~~--  107 (178)
                      ..|+..+...++ .+.|..+|+++....  |...++  ..++..+.+.++ --+|.+++.+..+.      ...+ +.  
T Consensus       252 ~~Ll~~~~~t~~~~~~a~~~le~L~~~~--p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~  329 (754)
T 4gns_B          252 YSLKSFIAITPSLVDFTIDYLKGLTKKD--PIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADS  329 (754)
T ss_dssp             HHHHHHHHTCGGGHHHHHHHHHHHHHHC--GGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHH
T ss_pred             HHHHHHHcccccHHHHHHHHHHHHHhhC--CchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhccccccc
Confidence            345555555555 588999999988874  443332  233443333332 22344444433321      1111 11  


Q ss_pred             --------HHHHHHHHHHHhcCChhhhc----------c-chhhHHHHHHHHHhcCChhHHHHHHHHH
Q 036068          108 --------FAGNALIDMYCICADVEKAQ----------K-DKFSWTTMIVGLAISGNGDKALDMFSQM  156 (178)
Q Consensus       108 --------~~~~~ll~~~~~~~~~~~a~----------~-~~~~~~~li~~~~~~~~~~~a~~~~~~m  156 (178)
                              ...+.=.+.+...|+++.|.          | +..+|..|...|...|+++.|+-.++-+
T Consensus       330 ~~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc  397 (754)
T 4gns_B          330 ARLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM  397 (754)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred             ccccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence                    11222233456689999988          4 6899999999999999999999988877

>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A

Probab=93.93  E-value=0.64  Score=28.75  Aligned_cols=70  Identities=13%  Similarity=0.270  Sum_probs=45.2

Q ss_pred             HHHHHHHHHhcCChhHHHHHhccCCCCC---hhHHHHHHHHHhhcCC--hhHHHHHHHHhHhCCCCCcHHHHHHH
Q 036068            9 WTAIVSRYINRGQVDIARQCFDQMPERD---YVLWTAMIDGYLRVNR--FREALTLFQEMQTSNIMGDEFTIVSI   78 (178)
Q Consensus         9 ~~~li~~~~~~~~~~~a~~~~~~m~~~~---~~~~~~li~~~~~~~~--~~~a~~~~~~m~~~~~~~~~~~~~~l   78 (178)
                      -..+|.-|...|+.++|.+.++++..|.   ..+...+..++-+.++  -+.+..++..+...|+.+.......+
T Consensus        10 i~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is~~q~~~Gf   84 (129)
T 2nsz_A           10 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQMKRGY   84 (129)
T ss_dssp             HHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHHHHHH
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHhCCCccHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHHHHHHHH
Confidence            4567888888888888888888887662   2234445555555432  35677777777777766555443333

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=93.82  E-value=0.23  Score=36.83  Aligned_cols=68  Identities=21%  Similarity=0.238  Sum_probs=56.2

Q ss_pred             HHHHHHHHHhcCChhHHHHHhccCCC--C-ChhHHHHHHHHHhhcCChhHHHHHHHHhHh-----CCCCCcHHHHH
Q 036068            9 WTAIVSRYINRGQVDIARQCFDQMPE--R-DYVLWTAMIDGYLRVNRFREALTLFQEMQT-----SNIMGDEFTIV   76 (178)
Q Consensus         9 ~~~li~~~~~~~~~~~a~~~~~~m~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~-----~~~~~~~~~~~   76 (178)
                      ...++..+...|+++++...+..+..  | +...|..+|.++.+.|+..+|.+.|++..+     .|+.|+..+-.
T Consensus       174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~  249 (388)
T 2ff4_A          174 HTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRA  249 (388)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence            34567788889999999988877653  4 777999999999999999999999998744     59999987643

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=93.71  E-value=0.35  Score=30.89  Aligned_cols=68  Identities=7%  Similarity=0.001  Sum_probs=53.8

Q ss_pred             CChhHHHHHHHHHhhcC---ChhHHHHHHHHhHhCCCCC--cHHHHHHHHHHhccccchhhHHHHHHHHHHhCc
Q 036068           35 RDYVLWTAMIDGYLRVN---RFREALTLFQEMQTSNIMG--DEFTIVSILTARANLRALDLGEWIKTYIDKNKV  103 (178)
Q Consensus        35 ~~~~~~~~li~~~~~~~---~~~~a~~~~~~m~~~~~~~--~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~  103 (178)
                      ++..+.-.+-.++++++   +.+++..+|++..+.. .|  ....+-.+--++.+.+++++|.+.++.+.+..+
T Consensus        30 ~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ieP  102 (152)
T 1pc2_A           30 VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEP  102 (152)
T ss_dssp             CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCT
T ss_pred             CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCC
Confidence            46666666777888887   6779999999988875 34  345556677788999999999999999998764

>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14

Probab=93.52  E-value=1.3  Score=32.26  Aligned_cols=141  Identities=8%  Similarity=-0.034  Sum_probs=80.2

Q ss_pred             HHHHHHHHHhcCChhHHHHHhccCCCCCh---hHHHHHHHHHhhcC-ChhHHHHHHHHhHhCCCCCcHHHHHHHHHHhcc
Q 036068            9 WTAIVSRYINRGQVDIARQCFDQMPERDY---VLWTAMIDGYLRVN-RFREALTLFQEMQTSNIMGDEFTIVSILTARAN   84 (178)
Q Consensus         9 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~---~~~~~li~~~~~~~-~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~   84 (178)
                      -..++.-|...|+.++|...++++..|..   .....+..++-+.. .-+.+..++..+.+.|+.+.......+-+.+..
T Consensus        14 ~~~ll~Ey~~~~d~~Ea~~ci~el~~p~~~~~~v~~~i~~~le~~~~~re~~~~Ll~~L~~~~~is~~~~~~Gf~~~~~~   93 (339)
T 1ug3_A           14 SKAIIEEYLHLNDMKEAVQCVQELASPSLLFIFVRHGVESTLERSAIAREHMGQLLHQLLCAGHLSTAQYYQGLYEILEL   93 (339)
T ss_dssp             HHHHHHHHHHHCCHHHHHHHHHTTCCGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHHcCCcccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHhh
Confidence            46789999999999999999999998742   22333333333321 235577788888877776555443333333333


Q ss_pred             cc----chhhHHHHHHHHHHh----CcccchHHHHHHHHHHHhcCChhhhccchhhHHHHHHHHHhcCChhHHHHHHHH
Q 036068           85 LR----ALDLGEWIKTYIDKN----KVKNDIFAGNALIDMYCICADVEKAQKDKFSWTTMIVGLAISGNGDKALDMFSQ  155 (178)
Q Consensus        85 ~~----~~~~a~~~~~~m~~~----~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~li~~~~~~~~~~~a~~~~~~  155 (178)
                      ..    |...|...+..+...    |.-|-...++.+...+...|...      .....++..+.+....+.+.++|++
T Consensus        94 l~Dl~lDiP~a~~~La~~v~~~i~~g~l~~~~l~~~~~~~l~~~g~~~------~fl~~vl~~l~~~~g~~~l~~~~~~  166 (339)
T 1ug3_A           94 AEDMEIDIPHVWLYLAELVTPILQEGGVPMGELFREITKPLRPLGKAA------SLLLEILGLLCKSMGPKKVGTLWRE  166 (339)
T ss_dssp             HHHHTTTCTTHHHHHHHHHGGGGSTTSCCHHHHHHHHTTTHHHHTCHH------HHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred             ChHhhcCccchHHHHHHHHHHHHHCCCCCHHHHHHHHHHhhhccchHH------HHHHHHHHHHHHHcCHHHHHHHHHH
Confidence            22    456777777766543    43332233333333333333222      2344455555666666666666653

>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A

Probab=92.79  E-value=0.67  Score=29.59  Aligned_cols=74  Identities=12%  Similarity=0.231  Sum_probs=47.8

Q ss_pred             HHHHHHHHHhcCChhHHHHHhccCCCCC---hhHHHHHHHHHhhcCC--hhHHHHHHHHhHhCCCCCcHHHHHHHHHHh
Q 036068            9 WTAIVSRYINRGQVDIARQCFDQMPERD---YVLWTAMIDGYLRVNR--FREALTLFQEMQTSNIMGDEFTIVSILTAR   82 (178)
Q Consensus         9 ~~~li~~~~~~~~~~~a~~~~~~m~~~~---~~~~~~li~~~~~~~~--~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~   82 (178)
                      -+.+|.-|...|+.++|.+.++++..|.   ..+...+..++-+.++  -+.+..++..+...|+.+.......+-+.+
T Consensus        12 i~~lL~EY~~~~D~~EA~~cl~EL~~p~f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is~~q~~~Gf~~vl   90 (152)
T 2ion_A           12 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQMKRGYERIY   90 (152)
T ss_dssp             HHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHHHHHHHHHHHH
Confidence            4677888888889999988888887762   2334445555555332  455777788887777665555443333333

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=92.34  E-value=2.2  Score=30.47  Aligned_cols=125  Identities=10%  Similarity=0.050  Sum_probs=75.8

Q ss_pred             CChhHHHHHhccCCCCCh--hHHHHHHH-HHhhc--CC------hhHHHHHHHHhHhCCCCCc---HHHHHHHHHHhccc
Q 036068           20 GQVDIARQCFDQMPERDY--VLWTAMID-GYLRV--NR------FREALTLFQEMQTSNIMGD---EFTIVSILTARANL   85 (178)
Q Consensus        20 ~~~~~a~~~~~~m~~~~~--~~~~~li~-~~~~~--~~------~~~a~~~~~~m~~~~~~~~---~~~~~~ll~~~~~~   85 (178)
                      ++..+..+.+.+....++  ..|..++. .++..  |+      ...|...+++..+.  .|+   -..|..+-..|.+.
T Consensus       135 ~~~~~~~~~l~~~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleL--DP~~~~GsA~~~LG~lY~~v  212 (301)
T 3u64_A          135 GDEQRLHKVLSRCTRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDL--WPSYQEGAVWNVLTKFYAAA  212 (301)
T ss_dssp             SCHHHHHHHHTTCCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHH--CTTHHHHHHHHHHHHHHHHS
T ss_pred             cchhhHHHHHHHcCccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHhC
Confidence            344455566666654433  35665554 33432  32      45666666766664  466   45788888888874


Q ss_pred             -----cchhhHHHHHHHHHHhCcccchHHHHHHHHHHHhcCChhhhccchhhHHHHHHHHHh-cCChhHHHHHHHHHHHc
Q 036068           86 -----RALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQKDKFSWTTMIVGLAI-SGNGDKALDMFSQMLRA  159 (178)
Q Consensus        86 -----~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~li~~~~~-~~~~~~a~~~~~~m~~~  159 (178)
                           |+.++|.+.|++..+.++.-+..++                       ......+++ .|+.+++.+++++.+..
T Consensus       213 Pp~~gGd~ekA~~~ferAL~LnP~~~id~~-----------------------v~YA~~l~~~~gd~~~a~~~L~kAL~a  269 (301)
T 3u64_A          213 PESFGGGMEKAHTAFEHLTRYCSAHDPDHH-----------------------ITYADALCIPLNNRAGFDEALDRALAI  269 (301)
T ss_dssp             CTTTTCCHHHHHHHHHHHHHHCCTTCSHHH-----------------------HHHHHHTTTTTTCHHHHHHHHHHHHHC
T ss_pred             CCccCCCHHHHHHHHHHHHHhCCCCCchHH-----------------------HHHHHHHHHhcCCHHHHHHHHHHHHcC
Confidence                 9999999999999887653223333                       334444455 36667777777777765


Q ss_pred             CCC--CChhHHH
Q 036068          160 SIK--PDEVAYV  169 (178)
Q Consensus       160 g~~--p~~~t~~  169 (178)
                      ...  |+....+
T Consensus       270 ~p~~~P~~~lan  281 (301)
T 3u64_A          270 DPESVPHNKLLV  281 (301)
T ss_dssp             CGGGCSSCHHHH
T ss_pred             CCCCCCChhHHH
Confidence            444  5544433

>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}

Probab=92.28  E-value=4.8  Score=34.29  Aligned_cols=147  Identities=10%  Similarity=0.034  Sum_probs=100.7

Q ss_pred             HHHHHHHHhcCChhHHHHHhccCCCC--------------------------ChhHHHHHHHHHhhcCChhHHHHHHHHh
Q 036068           10 TAIVSRYINRGQVDIARQCFDQMPER--------------------------DYVLWTAMIDGYLRVNRFREALTLFQEM   63 (178)
Q Consensus        10 ~~li~~~~~~~~~~~a~~~~~~m~~~--------------------------~~~~~~~li~~~~~~~~~~~a~~~~~~m   63 (178)
                      -.+-.++...|++++|.+.|.+.-..                          -..-|..++..+.+.+.++.+.++-+.-
T Consensus       846 yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lA  925 (1139)
T 4fhn_B          846 YLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLA  925 (1139)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHH
T ss_pred             HHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            44678889999999999999876420                          1123778888999999998888776654


Q ss_pred             HhCCC--CCc--HHHHHHHHHHhccccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHhcCChhhhc------------
Q 036068           64 QTSNI--MGD--EFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ------------  127 (178)
Q Consensus        64 ~~~~~--~~~--~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~------------  127 (178)
                      .+..-  .++  ...|..+++++...+++++|...+-.+......  ......+|...|..|..+...            
T Consensus       926 i~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~r--~~cLr~LV~~lce~~~~~~L~~lpf~gl~~~Vd 1003 (1139)
T 4fhn_B          926 DASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPLK--KSCLLDFVNQLTKQGKINQLLNYSMPTLRQDVD 1003 (1139)
T ss_dssp             HHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSSC--HHHHHHHHHHHHHHCCHHHHHHHTTTSCHHHHH
T ss_pred             HHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHHH--HHHHHHHHHHHHhCCChhhhhCCCCccHHHHHH
Confidence            43321  122  225788999999999999999998777655433  456777888888888777654            


Q ss_pred             ------------c-c-hhhHHHHHHHHHhcCChhHHH-HHHHHHHH
Q 036068          128 ------------K-D-KFSWTTMIVGLAISGNGDKAL-DMFSQMLR  158 (178)
Q Consensus       128 ------------~-~-~~~~~~li~~~~~~~~~~~a~-~~~~~m~~  158 (178)
                                  + + +.-|..|=.-....|++.+|- -+|++..+
T Consensus      1004 ~IL~~kAr~~~~~~~~p~Yy~iLYs~ri~r~dyR~AA~vmYe~~~R 1049 (1139)
T 4fhn_B         1004 NLLERKAFQMINVESQPCWYNILFSWRYKHQNYRDAAAIIYEKLSR 1049 (1139)
T ss_dssp             HHHHHHHHHHHHHCCSTHHHHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCccccCCCHHHHhHhhhhccCChHHHHHHHHHHHHH
Confidence                        0 1 122455556666677776544 45555544

>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}

Probab=91.83  E-value=1.8  Score=28.37  Aligned_cols=95  Identities=16%  Similarity=0.201  Sum_probs=63.3

Q ss_pred             HHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHHhccccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHhcCChhh
Q 036068           46 GYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEK  125 (178)
Q Consensus        46 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~  125 (178)
                      ...+.|+++.|.++.+++      -+...|..+-+...+.|+++-|++.|....+         +..+.-.|.-.|+.++
T Consensus        14 LAL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~   78 (177)
T 3mkq_B           14 LALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNK   78 (177)
T ss_dssp             HHHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHH
T ss_pred             HHHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHH
Confidence            345678999999887765      3678899999999999999999999876644         2333334444444443


Q ss_pred             hc------cchhhHHHHHHHHHhcCChhHHHHHHHH
Q 036068          126 AQ------KDKFSWTTMIVGLAISGNGDKALDMFSQ  155 (178)
Q Consensus       126 a~------~~~~~~~~li~~~~~~~~~~~a~~~~~~  155 (178)
                      ..      ...--+|.....+...|+++++.++|.+
T Consensus        79 L~kla~iA~~~g~~n~af~~~l~lGdv~~~i~lL~~  114 (177)
T 3mkq_B           79 LSKMQNIAQTREDFGSMLLNTFYNNSTKERSSIFAE  114 (177)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHCccHHHHHHHHHHcCCHHHHHHHHHH
Confidence            32      1122355666666677777777777644

>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A

Probab=91.30  E-value=0.0044  Score=47.46  Aligned_cols=113  Identities=10%  Similarity=0.092  Sum_probs=92.4

Q ss_pred             ChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHHhccccchhhHHHHHHHHHHhCcccchHHHHHHHH
Q 036068           36 DYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALID  115 (178)
Q Consensus        36 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~  115 (178)
                      ....|..|-.+..+.+++.+|++.|-+   .   -|...|..++.+..+.|.+++-..++....+..  .++.+=+.|+.
T Consensus        53 ~p~VWs~LgkAqL~~~~v~eAIdsyIk---A---~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~--ke~~IDteLi~  124 (624)
T 3lvg_A           53 EPAVWSQLAKAQLQKGMVKEAIDSYIK---A---DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIF  124 (624)
T ss_dssp             CCCCSSSHHHHTTTSSSCTTTTTSSCC---C---SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTC--CSTTTTHHHHH
T ss_pred             CccHHHHHHHHHHccCchHHHHHHHHh---C---CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh--cccccHHHHHH
Confidence            556788999999999999998875543   2   255678899999999999999999988777653  34556679999


Q ss_pred             HHHhcCChhhhc-----cchhhHHHHHHHHHhcCChhHHHHHHHHH
Q 036068          116 MYCICADVEKAQ-----KDKFSWTTMIVGLAISGNGDKALDMFSQM  156 (178)
Q Consensus       116 ~~~~~~~~~~a~-----~~~~~~~~li~~~~~~~~~~~a~~~~~~m  156 (178)
                      +|+|.++..+..     ||..-...+-+-|...|.++.|.-+|..+
T Consensus       125 ayAk~~rL~elEefl~~~N~A~iq~VGDrcf~e~lYeAAKilys~i  170 (624)
T 3lvg_A          125 ALAKTNRLAELEEFINGPNNAHIQQVGDRCYDEKMYDAAKLLYNNV  170 (624)
T ss_dssp             HHHTSCSSSTTTSTTSCCSSSCTHHHHHHHHHSCCSTTSSTTGGGS
T ss_pred             HHHhhCcHHHHHHHHcCCCcccHHHHHHHHHHccCHHHHHHHHHhC
Confidence            999999999876     78888888999999999999888777654

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=90.59  E-value=1.9  Score=26.50  Aligned_cols=90  Identities=14%  Similarity=0.033  Sum_probs=57.5

Q ss_pred             CChhHHHHHHHHhHhCCCCCcHHHHHHHHHHhccccchhh---HHHHHHHHHHhCcccchHHHHHHHHHHHhcCChhhhc
Q 036068           51 NRFREALTLFQEMQTSNIMGDEFTIVSILTARANLRALDL---GEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ  127 (178)
Q Consensus        51 ~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~---a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~  127 (178)
                      .....+.+-|.+....|. ++..+--.+.-++.+......   +..+++.+.+.+. |. .                   
T Consensus        15 ~~l~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~-p~-~-------------------   72 (126)
T 1nzn_A           15 EDLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGS-KE-E-------------------   72 (126)
T ss_dssp             HHHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSC-HH-H-------------------
T ss_pred             HHHHHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCC-cc-h-------------------
Confidence            345566666666655553 666666667777777766554   7778877776541 21 0                   


Q ss_pred             cchhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCh
Q 036068          128 KDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDE  165 (178)
Q Consensus       128 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~  165 (178)
                       .....-.|..++.+.|++++|.++++.+++.  .|+.
T Consensus        73 -~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~--eP~n  107 (126)
T 1nzn_A           73 -QRDYVFYLAVGNYRLKEYEKALKYVRGLLQT--EPQN  107 (126)
T ss_dssp             -HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTC
T ss_pred             -HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh--CCCC
Confidence             1122334567778888888888888888874  5654

>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1

Probab=90.26  E-value=2.3  Score=26.87  Aligned_cols=122  Identities=12%  Similarity=0.037  Sum_probs=64.4

Q ss_pred             HHhcCChhHHHHHhccCCC-CChhHHHHHHHHHhhcCChhHHHHHHHHhHhC-CC----------------CCcHHHHHH
Q 036068           16 YINRGQVDIARQCFDQMPE-RDYVLWTAMIDGYLRVNRFREALTLFQEMQTS-NI----------------MGDEFTIVS   77 (178)
Q Consensus        16 ~~~~~~~~~a~~~~~~m~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-~~----------------~~~~~~~~~   77 (178)
                      +.-.|.+++..++..+..+ .+..-||=+|.-....-+=+-.++.++.+-+. .+                .-+......
T Consensus        17 ~ildG~v~qGveii~k~~~ssni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFDis~C~NlKrVi~C~~~~n~~se~vd~   96 (172)
T 1wy6_A           17 FLLDGYIDEGVKIVLEITKSSTKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLDKCQNLKSVVECGVINNTLNEHVNK   96 (172)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHSCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGGGCSCTHHHHHHHHHTTCCCHHHHH
T ss_pred             HHHhhhHHHHHHHHHHHcCCCCccccceeeeecchhhchhHHHHHHHHHhhhcCcHhhhcHHHHHHHHHHhcchHHHHHH
Confidence            4557888888888887764 35555555555444444444444444443221 00                112233445


Q ss_pred             HHHHhccccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHhcCChhhhccchhhHHHHHHHHHhcCChhHHHHHHHHHH
Q 036068           78 ILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQKDKFSWTTMIVGLAISGNGDKALDMFSQML  157 (178)
Q Consensus        78 ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~  157 (178)
                      .++.....|+.++-.+++..+.. +.+|++...-.+-                       .+|.+.|+..++.+++.+.-
T Consensus        97 ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia-----------------------~Ay~Klg~~r~a~eLl~~AC  152 (172)
T 1wy6_A           97 ALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIA-----------------------NALRRVGDERDATTLLIEAC  152 (172)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHH-----------------------HHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHH-----------------------HHHHHhcchhhHHHHHHHHH
Confidence            55566666666666666666433 2244444444444                       45555555555556665555


Q ss_pred             HcCC
Q 036068          158 RASI  161 (178)
Q Consensus       158 ~~g~  161 (178)
                      +.|+
T Consensus       153 ~kG~  156 (172)
T 1wy6_A          153 KKGE  156 (172)
T ss_dssp             HTTC
T ss_pred             Hhhh
Confidence            5554

>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A

Probab=89.76  E-value=2.3  Score=26.16  Aligned_cols=82  Identities=12%  Similarity=0.066  Sum_probs=54.0

Q ss_pred             HHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHHhcccc--chhhHHHHHHHHHHhCcccchHHHHHHHHH
Q 036068           39 LWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANLR--ALDLGEWIKTYIDKNKVKNDIFAGNALIDM  116 (178)
Q Consensus        39 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~--~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~  116 (178)
                      ..+.++.-|...|+.++|.++++++..-. .........+..++-+.+  ..+.+..++..+.+.|+-+.......+-..
T Consensus         9 ki~~ll~EY~~~~D~~Ea~~cl~eL~~p~-f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is~~q~~~Gf~~v   87 (129)
T 2nsz_A            9 EIDMLLKEYLLSGDISEAEHCLKELEVPH-FHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQMKRGYERI   87 (129)
T ss_dssp             HHHHHHHHHHHHCCHHHHHHHHHHHTCGG-GHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHhCCCc-cHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHHHHHHHHHHH
Confidence            35678999999999999999999986322 223445556666666653  346788888888887766554444444443


Q ss_pred             HHhcC
Q 036068          117 YCICA  121 (178)
Q Consensus       117 ~~~~~  121 (178)
                      +....
T Consensus        88 ~~~l~   92 (129)
T 2nsz_A           88 YNEIP   92 (129)
T ss_dssp             HHHHH
T ss_pred             HhhCh
Confidence            33333

>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A

Probab=89.43  E-value=2.8  Score=26.65  Aligned_cols=92  Identities=12%  Similarity=0.094  Sum_probs=58.1

Q ss_pred             HHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHHhcccc--chhhHHHHHHHHHHhCcccchHHHHHHHHH
Q 036068           39 LWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANLR--ALDLGEWIKTYIDKNKVKNDIFAGNALIDM  116 (178)
Q Consensus        39 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~--~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~  116 (178)
                      ..+.+|.-|...|+.++|.++++++..-. .....+...+..++-+.+  .-+.+..++..+.+.|+-+.......+-..
T Consensus        11 ki~~lL~EY~~~~D~~EA~~cl~EL~~p~-f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is~~q~~~Gf~~v   89 (152)
T 2ion_A           11 EIDMLLKEYLLSGDISEAEHCLKELEVPH-FHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQMKRGYERI   89 (152)
T ss_dssp             HHHHHHHHHHHHCCHHHHHHHHHHHTCGG-GHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHhCCCc-chHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHHHHHHHHHHH
Confidence            45678999999999999999999985322 223445556666666542  356678888888887766555544444444


Q ss_pred             HHhcCChhhhccchh
Q 036068          117 YCICADVEKAQKDKF  131 (178)
Q Consensus       117 ~~~~~~~~~a~~~~~  131 (178)
                      +....+..-=.|+..
T Consensus        90 l~~ldDl~lDiP~A~  104 (152)
T 2ion_A           90 YNEIPDINLDVPHSY  104 (152)
T ss_dssp             HHHHHHHHHHSTTHH
T ss_pred             HHhChHhccCccchH
Confidence            444433333224433

>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}

Probab=89.39  E-value=2.8  Score=26.50  Aligned_cols=67  Identities=6%  Similarity=-0.027  Sum_probs=51.3

Q ss_pred             HHHhHhCCCCCcHHHHHHHHHHhccccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHhcCChhhhc
Q 036068           60 FQEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ  127 (178)
Q Consensus        60 ~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~  127 (178)
                      -+.+.+.|++++..= ..++..+...+..-.|.++++.+.+.+...+..|.--.+..+...|.+....
T Consensus        15 ~~~l~~~g~r~T~qR-~~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~~~~   81 (150)
T 2xig_A           15 RMSIKKNGLKNSKQR-EEVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKENFISVLE   81 (150)
T ss_dssp             HHHHHHCC--CHHHH-HHHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred             HHHHHHcCCCCCHHH-HHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCcEEEEE
Confidence            345677888876543 4566666666778899999999999988888889888899999999887655

>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=89.27  E-value=3.2  Score=31.14  Aligned_cols=94  Identities=7%  Similarity=-0.045  Sum_probs=66.2

Q ss_pred             HHHHHHHHHHhcCChhHHHHHhccCCC------CChhHHHHHHHHHhhcCChhHHHHHHHHhHh---CCCCCcHHHHHHH
Q 036068            8 SWTAIVSRYINRGQVDIARQCFDQMPE------RDYVLWTAMIDGYLRVNRFREALTLFQEMQT---SNIMGDEFTIVSI   78 (178)
Q Consensus         8 ~~~~li~~~~~~~~~~~a~~~~~~m~~------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~~~~~l   78 (178)
                      ++..+.+.|.+.|+++.|.+.+.+++.      .-+..+-.+|+.+...+++..+...+++...   .+-.|+...-...
T Consensus       133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~  212 (429)
T 4b4t_R          133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT  212 (429)
T ss_dssp             CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence            345678889999999999999999874      2455677888999999999999999988643   3333443321111


Q ss_pred             --HHHhccccchhhHHHHHHHHHHh
Q 036068           79 --LTARANLRALDLGEWIKTYIDKN  101 (178)
Q Consensus        79 --l~~~~~~~~~~~a~~~~~~m~~~  101 (178)
                        ...+...+++..|.+.|-+....
T Consensus       213 ~~gl~~l~~r~f~~Aa~~f~e~~~t  237 (429)
T 4b4t_R          213 YYGIHCLAVRNFKEAAKLLVDSLAT  237 (429)
T ss_dssp             HHHHGGGGTSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhChHHHHHHHHHHHhcc
Confidence              11234567888888888666543

>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=89.25  E-value=5.6  Score=29.83  Aligned_cols=61  Identities=7%  Similarity=-0.024  Sum_probs=41.4

Q ss_pred             HHHHHHHHHhhcCChhHHHHHHHHhHhC--CCCCcHHHHHHHHHHhccccchhhHHHHHHHHH
Q 036068           39 LWTAMIDGYLRVNRFREALTLFQEMQTS--NIMGDEFTIVSILTARANLRALDLGEWIKTYID   99 (178)
Q Consensus        39 ~~~~li~~~~~~~~~~~a~~~~~~m~~~--~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~   99 (178)
                      +...+-..|.+.|++++|.++|.++...  +...-...+..+++.+...+++..+...++...
T Consensus       133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~  195 (429)
T 4b4t_R          133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVN  195 (429)
T ss_dssp             CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence            3445667777778888888888777653  223345667777777777777777777776654

>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*

Probab=88.90  E-value=3  Score=26.17  Aligned_cols=66  Identities=9%  Similarity=-0.005  Sum_probs=51.7

Q ss_pred             HHhHhCCCCCcHHHHHHHHHHhccccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHhcCChhhhc
Q 036068           61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ  127 (178)
Q Consensus        61 ~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~  127 (178)
                      +.+.+.|++++..= ..++..+...+..-.|.++++.+.+.+...+..|..--+..+...|.+....
T Consensus        11 ~~l~~~g~r~T~qR-~~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~~~~   76 (145)
T 2fe3_A           11 ETLKETGVRITPQR-HAILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGLVKELT   76 (145)
T ss_dssp             HHHHHTTCCCCHHH-HHHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTSEEEEC
T ss_pred             HHHHHcCCCCCHHH-HHHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCCEEEEe
Confidence            45677888777543 4556666666677889999999999988888889888899999999877654

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=88.65  E-value=1.6  Score=26.90  Aligned_cols=68  Identities=6%  Similarity=-0.041  Sum_probs=50.6

Q ss_pred             CChhHHHHHHHHHhhcCChhH---HHHHHHHhHhCCCCC--cHHHHHHHHHHhccccchhhHHHHHHHHHHhCc
Q 036068           35 RDYVLWTAMIDGYLRVNRFRE---ALTLFQEMQTSNIMG--DEFTIVSILTARANLRALDLGEWIKTYIDKNKV  103 (178)
Q Consensus        35 ~~~~~~~~li~~~~~~~~~~~---a~~~~~~m~~~~~~~--~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~  103 (178)
                      ++..+--.+-.++++++....   ++.++.++.+.+ .|  .....-.+.-++.+.|++++|.+.++.+.+..+
T Consensus        33 ~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~eP  105 (126)
T 1nzn_A           33 VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEP  105 (126)
T ss_dssp             CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred             CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCC
Confidence            555665566677777776555   888999988765 23  334445667789999999999999999998764

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=88.46  E-value=1.6  Score=35.37  Aligned_cols=117  Identities=14%  Similarity=0.008  Sum_probs=71.8

Q ss_pred             HHHHHHHHhcCC-hhHHHHHhccCCCCCh--h--HHHHHHHHHhhcCC-hhHHHHHHHHhHhC------CCCCc-H----
Q 036068           10 TAIVSRYINRGQ-VDIARQCFDQMPERDY--V--LWTAMIDGYLRVNR-FREALTLFQEMQTS------NIMGD-E----   72 (178)
Q Consensus        10 ~~li~~~~~~~~-~~~a~~~~~~m~~~~~--~--~~~~li~~~~~~~~-~~~a~~~~~~m~~~------~~~~~-~----   72 (178)
                      ..++..+...|+ ++.|.++|+++.+.+.  .  ....+|..+.+.++ --+|.+++.+..+.      ...+. .    
T Consensus       252 ~~Ll~~~~~t~~~~~~a~~~le~L~~~~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~  331 (754)
T 4gns_B          252 YSLKSFIAITPSLVDFTIDYLKGLTKKDPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSAR  331 (754)
T ss_dssp             HHHHHHHHTCGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHH
T ss_pred             HHHHHHHcccccHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhccccccccc
Confidence            345555666666 5779999998875332  2  22233444333332 23355555554321      11111 1    


Q ss_pred             ------HHHHHHHHHhccccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHhcCChhhhc
Q 036068           73 ------FTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ  127 (178)
Q Consensus        73 ------~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~  127 (178)
                            .....=.+.|...|+++-|.++-++....- +.+-.+|..|...|.+.|+++.|+
T Consensus       332 ~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~a-PseF~tW~~La~vYi~l~d~e~AL  391 (754)
T 4gns_B          332 LMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELA-LDSFESWYNLARCHIKKEEYEKAL  391 (754)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             ccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcC-chhhHHHHHHHHHHHHhccHHHHH
Confidence                  112222344667899999999988877764 335789999999999999999998

>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42

Probab=88.14  E-value=2.8  Score=25.94  Aligned_cols=66  Identities=9%  Similarity=-0.010  Sum_probs=51.1

Q ss_pred             HHhHhCCCCCcHHHHHHHHHHhcccc-chhhHHHHHHHHHHhCcccchHHHHHHHHHHHhcCChhhhc
Q 036068           61 QEMQTSNIMGDEFTIVSILTARANLR-ALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ  127 (178)
Q Consensus        61 ~~m~~~~~~~~~~~~~~ll~~~~~~~-~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~  127 (178)
                      +.+.+.|++++..= ..++..+...+ ..-.|.++++.+.+.+...+..|..--+..+...|-+....
T Consensus         7 ~~l~~~g~r~T~qR-~~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~~~~   73 (136)
T 1mzb_A            7 SELRKAGLKVTLPR-VKILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAGLVVRHN   73 (136)
T ss_dssp             HHHHHTTCCCCHHH-HHHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSEEEEC
T ss_pred             HHHHHCCCCCCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCcEEEEE
Confidence            34667888877544 45666666666 67889999999999988888888888899999988877654

>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}

Probab=88.13  E-value=3.5  Score=26.04  Aligned_cols=66  Identities=8%  Similarity=-0.038  Sum_probs=52.5

Q ss_pred             HHhHhCCCCCcHHHHHHHHHHhcccc-chhhHHHHHHHHHHhCcccchHHHHHHHHHHHhcCChhhhc
Q 036068           61 QEMQTSNIMGDEFTIVSILTARANLR-ALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ  127 (178)
Q Consensus        61 ~~m~~~~~~~~~~~~~~ll~~~~~~~-~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~  127 (178)
                      +.+.+.|++++..= ..++..+...+ ..-.|.++++.+.+.+...+..|..--+..+...|.+....
T Consensus         6 ~~l~~~g~r~T~qR-~~Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~~~~   72 (150)
T 2w57_A            6 QALKDAGLKVTLPR-LKILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAGIVTRHH   72 (150)
T ss_dssp             HHHHHTTCCCCHHH-HHHHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred             HHHHHcCCCCCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCcEEEEE
Confidence            45677888877544 45667776666 67889999999999988888889888899999999887654

>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A

Probab=87.44  E-value=3.9  Score=29.33  Aligned_cols=25  Identities=16%  Similarity=0.526  Sum_probs=12.2

Q ss_pred             HHHHHHHhcCChhHHHHHhccCCCC
Q 036068           11 AIVSRYINRGQVDIARQCFDQMPER   35 (178)
Q Consensus        11 ~li~~~~~~~~~~~a~~~~~~m~~~   35 (178)
                      .+|.-|...|+.++|...++++..|
T Consensus       171 ~lL~EY~~~~D~~EA~~ci~EL~~p  195 (307)
T 2zu6_B          171 MLLKEYLLSGDISEAEHCLKELEVP  195 (307)
T ss_dssp             HHHHHHHHHCCHHHHHHHHHHHCCG
T ss_pred             HHHHHHHcCCCHHHHHHHHHHcCCC
Confidence            3444444445555555555555443

>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}

Probab=87.43  E-value=3  Score=24.59  Aligned_cols=51  Identities=10%  Similarity=-0.032  Sum_probs=24.6

Q ss_pred             HHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHHhccccchhhHHHHHHHHHHhC
Q 036068           46 GYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNK  102 (178)
Q Consensus        46 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~  102 (178)
                      .+.+.|++++|..+.+.+.    .||...|.++-  -.+.|--++++.-+..+..+|
T Consensus        48 SLmNrG~Yq~Al~l~~~~c----~pdlepw~ALc--e~rlGl~s~le~rL~~la~sg   98 (115)
T 2uwj_G           48 SLANQGRYQEALAFAHGNP----WPALEPWFALC--EWHLGLGAALDRRLAGLGGSS   98 (115)
T ss_dssp             HHHHTTCHHHHHGGGTTCC----CGGGHHHHHHH--HHHTTCHHHHHHHHHHHHTCS
T ss_pred             HHHcchhHHHHHHhcCCCC----CchHHHHHHHH--HHhcccHHHHHHHHHHHHhCC
Confidence            4445556666654443332    45555553332  234455555555555555444

>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}

Probab=87.25  E-value=5  Score=26.87  Aligned_cols=72  Identities=14%  Similarity=-0.004  Sum_probs=55.6

Q ss_pred             CChhHHHHHHHHHhh--cCChhHHHHHHHHhHhCCCCCc-HHHHHHHHHHhccccchhhHHHHHHHHHHhCcccc
Q 036068           35 RDYVLWTAMIDGYLR--VNRFREALTLFQEMQTSNIMGD-EFTIVSILTARANLRALDLGEWIKTYIDKNKVKND  106 (178)
Q Consensus        35 ~~~~~~~~li~~~~~--~~~~~~a~~~~~~m~~~~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~  106 (178)
                      .|..-....|..--.  ++...++.++|..|.++||.-. +.-|......+-..|++++|.++|+.=++.+-.|-
T Consensus        75 ND~RYLklWl~Ya~~~~~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P~  149 (202)
T 3esl_A           75 NDPRFLKIWIWYINLFLSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRPY  149 (202)
T ss_dssp             TCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSH
T ss_pred             CCHHHHHHHHHHHHhhcccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccH
Confidence            366655555543333  4557799999999999887544 56788888889999999999999999999888884

>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}

Probab=86.74  E-value=5.8  Score=29.12  Aligned_cols=93  Identities=13%  Similarity=0.100  Sum_probs=44.7

Q ss_pred             HHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHHhcccc--chhhHHHHHHHHHHhCcccchHHHHHHHHHH
Q 036068           40 WTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANLR--ALDLGEWIKTYIDKNKVKNDIFAGNALIDMY  117 (178)
Q Consensus        40 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~--~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~  117 (178)
                      .+.+|.-|...|+.++|.++++++..-... .......+..++-+.+  .-+.+.+++..+.+.|+-+.......+...+
T Consensus       220 i~~lL~EY~~s~D~~EA~~ci~EL~~p~fh-he~V~~av~~aLE~~~~~~re~~~~LL~~L~~~glls~~q~~~Gf~~vl  298 (358)
T 3eiq_C          220 IDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQMKRGYERIY  298 (358)
T ss_dssp             HHHHHHHHHHHCCHHHHHHHHHHHCCTTCH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred             HHHHHHHhccCCCHHHHHHHHHHccCCcch-HHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
Confidence            455566666666666666666665432211 2233334444444332  2344555555555555554444444444444


Q ss_pred             HhcCChhhhccchhhH
Q 036068          118 CICADVEKAQKDKFSW  133 (178)
Q Consensus       118 ~~~~~~~~a~~~~~~~  133 (178)
                      ....+..-=.|....+
T Consensus       299 ~~ldDl~lDiP~A~~~  314 (358)
T 3eiq_C          299 NEIPDINLDVPHSYSV  314 (358)
T ss_dssp             HHHHHHHHHCTTHHHH
T ss_pred             HhccHhhcccccHHHH
Confidence            4444444434444433

>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}

Probab=86.67  E-value=3.4  Score=24.42  Aligned_cols=75  Identities=9%  Similarity=-0.021  Sum_probs=37.9

Q ss_pred             ChhHHHHHhccCCC-CChhHHHHHH--HHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHHhccccchhhHHHHHHH
Q 036068           21 QVDIARQCFDQMPE-RDYVLWTAMI--DGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTY   97 (178)
Q Consensus        21 ~~~~a~~~~~~m~~-~~~~~~~~li--~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~   97 (178)
                      ..++|..+-+.+.. ++ .-.-.||  ..+.+.|++++|..+.+.+.    .||...|.++-  -.+.|--++++.-+..
T Consensus        22 ~HqEA~tIAdwL~~~~~-~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c----~pdlepw~ALc--e~rlGl~s~le~rL~~   94 (116)
T 2p58_C           22 YHEEANCIAEWLHLKGE-EEAVQLIRLSSLMNRGDYASALQQGNKLA----YPDLEPWLALC--EYRLGLGSALESRLNR   94 (116)
T ss_dssp             CHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHTTCHHHHHHHHTTSC----CGGGHHHHHHH--HHHHTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHcchhHHHHHHhcCCCC----CchHHHHHHHH--HHhcccHHHHHHHHHH
Confidence            34555555554432 22 2222333  34556667777766555543    46666664442  2355555555555555


Q ss_pred             HHHhC
Q 036068           98 IDKNK  102 (178)
Q Consensus        98 m~~~~  102 (178)
                      +..+|
T Consensus        95 la~sg   99 (116)
T 2p58_C           95 LARSQ   99 (116)
T ss_dssp             HTTCC
T ss_pred             HHhCC
Confidence            55554

>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}

Probab=85.53  E-value=2.7  Score=26.40  Aligned_cols=65  Identities=12%  Similarity=0.004  Sum_probs=49.6

Q ss_pred             HHhHhCCCCCcHHHHHHHHHHhccccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHhcCChhhhc
Q 036068           61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ  127 (178)
Q Consensus        61 ~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~  127 (178)
                      +.+.+.|++++..= ..++..+.+.+ .-.|.++++.+.+.+...+..|.---+..+...|.+....
T Consensus         8 ~~L~~~g~r~T~qR-~~Il~~l~~~~-h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv~~i~   72 (145)
T 3eyy_A            8 SDLRQRGYRLTPQR-QLVLEAVDTLE-HATPDDILGEVRKTASGINISTVYRTLELLEELGLVSHAH   72 (145)
T ss_dssp             HHHHTTTCCCCHHH-HHHHHHHHHHS-SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHTSEEEEE
T ss_pred             HHHHHcCCCcCHHH-HHHHHHHHhcC-CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCCcEEEEE
Confidence            45667888877543 34555555555 6789999999999988888888888889999998877654

>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}

Probab=85.45  E-value=5.4  Score=25.56  Aligned_cols=73  Identities=10%  Similarity=0.008  Sum_probs=56.2

Q ss_pred             hHHHHHHHH-hHhCCCCCcHHHHHHHHHHhccccchhhHHHHHHHHHHh--CcccchHHHHHHHHHHHhcCChhhhc
Q 036068           54 REALTLFQE-MQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKN--KVKNDIFAGNALIDMYCICADVEKAQ  127 (178)
Q Consensus        54 ~~a~~~~~~-m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~--~~~~~~~~~~~ll~~~~~~~~~~~a~  127 (178)
                      +.+.+-+.+ +.+.|++++.. =..++..+.+.+..-.|.++++.+.+.  +...+..|.---++.+...|......
T Consensus        14 ~~~~~~~~~~L~~~g~r~T~q-R~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Glv~~i~   89 (162)
T 4ets_A           14 DVLLERFKKILRQGGLKYTKQ-REVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEMVTSIS   89 (162)
T ss_dssp             HHHHHHHHHHHHHHTCCCCHH-HHHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTSEEECC
T ss_pred             HHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCEEEEE
Confidence            444444444 56678887654 356778887877888999999999998  88888888888889999999887664

>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}

Probab=84.06  E-value=3.8  Score=22.64  Aligned_cols=65  Identities=6%  Similarity=-0.058  Sum_probs=50.0

Q ss_pred             HHhHhCCCCCcHHHHHHHHHHhcccc-chhhHHHHHHHHHHhCcccchHHHHHHHHHHHhcCChhhh
Q 036068           61 QEMQTSNIMGDEFTIVSILTARANLR-ALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKA  126 (178)
Q Consensus        61 ~~m~~~~~~~~~~~~~~ll~~~~~~~-~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a  126 (178)
                      +.|.+.|+..+..- ..++..+.+.+ ..-.+.++++.+.+.+...+..|..-.+..+.+.|-+...
T Consensus         6 ~~l~~~g~~~t~~r-~~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~Glv~~~   71 (83)
T 2fu4_A            6 TALKKAGLKVTLPR-LKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIVTRH   71 (83)
T ss_dssp             HHHHHTTCCCCHHH-HHHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSEEEE
T ss_pred             HHHHHcCCCcCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCeEEE
Confidence            44667888777655 55667777665 5677899999999888778888888889999988877643

>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...

Probab=83.62  E-value=3.9  Score=24.20  Aligned_cols=45  Identities=9%  Similarity=0.042  Sum_probs=25.4

Q ss_pred             cchhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhHHHHHHh
Q 036068          128 KDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLS  173 (178)
Q Consensus       128 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~  173 (178)
                      |++....+.+++|-+.+++-.|.++++-.+.. ..+...+|-.+++
T Consensus        43 P~P~ii~aaLrAcRRvND~alAVR~lE~iK~K-~~~~~~iY~~~lq   87 (109)
T 1v54_E           43 PEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQ   87 (109)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHH
T ss_pred             CCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-hcCchhhHHHHHH
Confidence            44445555666666666666777777666543 2233445555544

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}

Probab=82.70  E-value=7.7  Score=25.15  Aligned_cols=148  Identities=12%  Similarity=0.053  Sum_probs=96.4

Q ss_pred             CcchhHHHHHHHHHHhcCChhHHHHHhccCCCCChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHHh
Q 036068            3 NKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTAR   82 (178)
Q Consensus         3 ~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~   82 (178)
                      .||..+-...+..+.+.+.-+....+.+.+..++...-...+.++.+.+.. ++...+.++...   ++...-...+.++
T Consensus        25 ~~~~~vr~~A~~~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~~-~~~~~L~~~l~d---~~~~vr~~a~~aL  100 (201)
T 3ltj_A           25 DDSYYVRRAAAYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIGDE-RAVEPLIKALKD---EDGWVRQSAAVAL  100 (201)
T ss_dssp             CSCHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCG-GGHHHHHHHTTC---SSHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHhcCChhHHHHHHHHHcCCCHHHHHHHHHHHHhhCCH-HHHHHHHHHHcC---CCHHHHHHHHHHH
Confidence            466666667788888888877777777777778888877888888888764 444455555443   5666666777777


Q ss_pred             ccccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHhcCChhhhc--------cchhhHHHHHHHHHhcCChhHHHHHHH
Q 036068           83 ANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ--------KDKFSWTTMIVGLAISGNGDKALDMFS  154 (178)
Q Consensus        83 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~--------~~~~~~~~li~~~~~~~~~~~a~~~~~  154 (178)
                      .+.++.+....+.+ +.+   .++..+-...+.++++.++.+...        ++...-...+.++.+.|+ +++...+.
T Consensus       101 ~~~~~~~~~~~L~~-~l~---d~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~-~~~~~~L~  175 (201)
T 3ltj_A          101 GQIGDERAVEPLIK-ALK---DEDWFVRIAAAFALGEIGDERAVEPLIKALKDEDGWVRQSAADALGEIGG-ERVRAAME  175 (201)
T ss_dssp             HHHCCGGGHHHHHH-HTT---CSSHHHHHHHHHHHHHHTCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS-HHHHHHHH
T ss_pred             HHhCcHHHHHHHHH-HHc---CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-hhHHHHHH
Confidence            77776544444433 332   456777777788888877643221        444555666667777765 44566666


Q ss_pred             HHHHc
Q 036068          155 QMLRA  159 (178)
Q Consensus       155 ~m~~~  159 (178)
                      ++.+.
T Consensus       176 ~~l~d  180 (201)
T 3ltj_A          176 KLAET  180 (201)
T ss_dssp             HHHHH
T ss_pred             HHHhC
Confidence            66653

>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=81.77  E-value=4.8  Score=25.35  Aligned_cols=69  Identities=4%  Similarity=-0.021  Sum_probs=46.8

Q ss_pred             CChhHHHHHHHHHhhcC---ChhHHHHHHHHhHhCCCCCcHHHHHHHHHHhccccchhhHHHHHHHHHHhCc
Q 036068           35 RDYVLWTAMIDGYLRVN---RFREALTLFQEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKV  103 (178)
Q Consensus        35 ~~~~~~~~li~~~~~~~---~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~  103 (178)
                      ++..+-=..-.+++++.   +..+++.+++++.+.+-.-.....--+.-++.+.|++++|.++.+.+.+..+
T Consensus        37 vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP  108 (144)
T 1y8m_A           37 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHER  108 (144)
T ss_dssp             SCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCC
T ss_pred             CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCC
Confidence            44444334445555555   4567888888887764322344555667788999999999999999988754

>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14

Probab=80.91  E-value=3.5  Score=29.94  Aligned_cols=74  Identities=16%  Similarity=0.086  Sum_probs=46.2

Q ss_pred             HHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHHhcccc-chhhHHHHHHHHHHhCcccchHHHHHHH
Q 036068           40 WTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANLR-ALDLGEWIKTYIDKNKVKNDIFAGNALI  114 (178)
Q Consensus        40 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~-~~~~a~~~~~~m~~~~~~~~~~~~~~ll  114 (178)
                      ...++.-|...|+.++|..+++++..... ........+..++-+.. .-+.+..++..+.+.|+-+.......+-
T Consensus        14 ~~~ll~Ey~~~~d~~Ea~~ci~el~~p~~-~~~~v~~~i~~~le~~~~~re~~~~Ll~~L~~~~~is~~~~~~Gf~   88 (339)
T 1ug3_A           14 SKAIIEEYLHLNDMKEAVQCVQELASPSL-LFIFVRHGVESTLERSAIAREHMGQLLHQLLCAGHLSTAQYYQGLY   88 (339)
T ss_dssp             HHHHHHHHHHHCCHHHHHHHHHTTCCGGG-HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHTTSSCHHHHHHHHH
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHHcCCccc-HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
Confidence            56788999999999999999999854332 12334444444544322 3455667777777776654443333333

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	178
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	99.3
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	99.11
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.08
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.01
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	98.99
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	98.84
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	98.75
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	98.74
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	98.66
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	98.56
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	98.46
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	98.43
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	98.42
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	98.42
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	98.35
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	98.31
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	98.29
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	98.27
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	98.26
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	98.24
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	98.18
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	98.13
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	98.12
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	98.07
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	98.04
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	97.98
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	97.96
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	97.94
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	97.94
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	97.88
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	97.85
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	97.85
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	97.85
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	97.8
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	97.71
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	97.68
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	97.61
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	97.56
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	97.43
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	97.36
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	97.33
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	97.22
d1b89a_	336	Clathrin heavy chain proximal leg segment {Cow (Bo	97.11
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	96.93
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	96.73
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	96.59
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	96.47
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	96.38
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	96.19
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	96.13
d1wy6a1	161	Hypothetical protein ST1625 {Archaeon Sulfolobus t	95.86
d1v54e_	105	Cytochrome c oxidase subunit E {Cow (Bos taurus) [	95.29
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	95.27
d2nsza1	129	Programmed cell death 4, PDCD4 {Mouse (Mus musculu	94.29
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	93.47
d1b89a_	336	Clathrin heavy chain proximal leg segment {Cow (Bo	93.38
d1wy6a1	161	Hypothetical protein ST1625 {Archaeon Sulfolobus t	92.3
d1ug3a1	193	Eukaryotic initiation factor eIF4G {Human (Homo sa	91.57
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	90.16
d2nsza1	129	Programmed cell death 4, PDCD4 {Mouse (Mus musculu	89.76
d1mzba_	134	Ferric uptake regulation protein, FUR {Pseudomonas	89.4
d1ug3a1	193	Eukaryotic initiation factor eIF4G {Human (Homo sa	87.83
d1peqa1	162	R1 subunit of ribonucleotide reductase, N-terminal	87.28

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.30  E-value=2e-10  Score=82.19  Aligned_cols=168  Identities=12%  Similarity=0.025  Sum_probs=132.3

Q ss_pred             cchhHHHHHHHHHHhcCChhHHHHHhccCCC---CChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHH
Q 036068            4 KDVISWTAIVSRYINRGQVDIARQCFDQMPE---RDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILT   80 (178)
Q Consensus         4 p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~   80 (178)
                      -++..|..+...+...|++++|...+++..+   .+...+..+...+.+.|++++|.+.|++..+.. +-+..++..+..
T Consensus       201 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~  279 (388)
T d1w3ba_         201 NFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLAN  279 (388)
T ss_dssp             TCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHH
T ss_pred             ccHHHHHHHhhhhhccccHHHHHHHHHHhHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence            3456678888888888999888888887653   466677778888888999999999998887764 235677888888


Q ss_pred             HhccccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHhcCChhhhc----------c-chhhHHHHHHHHHhcCChhHH
Q 036068           81 ARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ----------K-DKFSWTTMIVGLAISGNGDKA  149 (178)
Q Consensus        81 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~----------~-~~~~~~~li~~~~~~~~~~~a  149 (178)
                      ++.+.|++++|.+.++...... +.+...+..+...+.+.|++++|.          | +..+|..+...+.+.|++++|
T Consensus       280 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A  358 (388)
T d1w3ba_         280 ALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEA  358 (388)
T ss_dssp             HHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHH
T ss_pred             HHHHcCCHHHHHHHHHhhhccC-CccchhhhHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Confidence            8899999999999998887765 346778888888899999999887          3 466788888999999999999


Q ss_pred             HHHHHHHHHcCCCCC-hhHHHHHHhhh
Q 036068          150 LDMFSQMLRASIKPD-EVAYVGVLSAC  175 (178)
Q Consensus       150 ~~~~~~m~~~g~~p~-~~t~~~li~a~  175 (178)
                      .+.|++.++  +.|+ ...+..+-.+|
T Consensus       359 ~~~~~~al~--l~P~~~~a~~~lg~~~  383 (388)
T d1w3ba_         359 LMHYKEAIR--ISPTFADAYSNMGNTL  383 (388)
T ss_dssp             HHHHHHHHT--TCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHH--hCCCCHHHHHHHHHHH
Confidence            999999886  3575 45566655544

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.11  E-value=6.7e-09  Score=73.99  Aligned_cols=165  Identities=12%  Similarity=0.059  Sum_probs=137.0

Q ss_pred             chhHHHHHHHHHHhcCChhHHHHHhccCCC---CChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHH
Q 036068            5 DVISWTAIVSRYINRGQVDIARQCFDQMPE---RDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTA   81 (178)
Q Consensus         5 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~   81 (178)
                      +...+..+...+...|++++|...+++..+   .+...|..+...+...|++++|...+++....+ ..+...+..+..+
T Consensus       168 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~  246 (388)
T d1w3ba_         168 FAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVHGNLACV  246 (388)
T ss_dssp             CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred             hhHHHHhhcccccccCcHHHHHHHHHHHHHhCcccHHHHHHHhhhhhccccHHHHHHHHHHhHHHh-hhHHHHHHHHHHH
Confidence            455677888999999999999999987642   367788999999999999999999999988765 3466778888899


Q ss_pred             hccccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHhcCChhhhc-----------cchhhHHHHHHHHHhcCChhHHH
Q 036068           82 RANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ-----------KDKFSWTTMIVGLAISGNGDKAL  150 (178)
Q Consensus        82 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~-----------~~~~~~~~li~~~~~~~~~~~a~  150 (178)
                      +.+.|++++|...++...+..+ .++.++..+...+.+.|++++|.           .+...+..+...+.+.|++++|.
T Consensus       247 ~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~  325 (388)
T d1w3ba_         247 YYEQGLIDLAIDTYRRAIELQP-HFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAV  325 (388)
T ss_dssp             HHHTTCHHHHHHHHHHHHHTCS-SCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHH
T ss_pred             HHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccCCccchhhhHHHHHHHHCCCHHHHH
Confidence            9999999999999999988764 35778999999999999999997           46678888889999999999999


Q ss_pred             HHHHHHHHcCCCCCh-hHHHHHHh
Q 036068          151 DMFSQMLRASIKPDE-VAYVGVLS  173 (178)
Q Consensus       151 ~~~~~m~~~g~~p~~-~t~~~li~  173 (178)
                      +.|++.++.  .|+. ..+..+-.
T Consensus       326 ~~~~~al~~--~p~~~~~~~~la~  347 (388)
T d1w3ba_         326 RLYRKALEV--FPEFAAAHSNLAS  347 (388)
T ss_dssp             HHHHHHTTS--CTTCHHHHHHHHH
T ss_pred             HHHHHHHHh--CCCCHHHHHHHHH
Confidence            999998864  5654 34444433

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.08  E-value=1e-08  Score=72.15  Aligned_cols=153  Identities=13%  Similarity=0.004  Sum_probs=96.6

Q ss_pred             chhHHHHHHHHHHhcCChhHHHHHhccCCC---CChhHHHHHHHHHhhcCChhHHHHHHHHhHhCC--------------
Q 036068            5 DVISWTAIVSRYINRGQVDIARQCFDQMPE---RDYVLWTAMIDGYLRVNRFREALTLFQEMQTSN--------------   67 (178)
Q Consensus         5 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~--------------   67 (178)
                      ++..|..+...+...|++++|...|++..+   .+...|..+...|...|++++|.+.+++.....              
T Consensus        52 ~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~  131 (323)
T d1fcha_          52 HMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGA  131 (323)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC------
T ss_pred             CHHHHHHHHHHHHHcCChHHHHHHHHhhhccccccccccccccccccccccccccccchhhHHHhccchHHHHHhhhhhh
Confidence            455677777777777777777777776542   255666667777777777777777776653311              


Q ss_pred             ------------------------------------CCCcHHHHHHHHHHhccccchhhHHHHHHHHHHhCcccchHHHH
Q 036068           68 ------------------------------------IMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGN  111 (178)
Q Consensus        68 ------------------------------------~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~  111 (178)
                                                          -.++...+..+...+...|++++|...++...+..+. +..+|.
T Consensus       132 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~  210 (323)
T d1fcha_         132 GGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPN-DYLLWN  210 (323)
T ss_dssp             ---------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHH
T ss_pred             hhcccccchhhHHHHHHhhHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHhhhhcccccccccccc-cccchh
Confidence                                                0112334444555566666777777777666655432 455666


Q ss_pred             HHHHHHHhcCChhhhc-----------cchhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 036068          112 ALIDMYCICADVEKAQ-----------KDKFSWTTMIVGLAISGNGDKALDMFSQMLR  158 (178)
Q Consensus       112 ~ll~~~~~~~~~~~a~-----------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~  158 (178)
                      .+-..|.+.|++++|.           .+...|..+...|.+.|++++|.+.|++.++
T Consensus       211 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~  268 (323)
T d1fcha_         211 KLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALN  268 (323)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             hhhhcccccccchhHHHHHHHHHHHhhccHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            6666677777777665           2455666677777777777777777776654

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.01  E-value=3.3e-08  Score=69.46  Aligned_cols=147  Identities=12%  Similarity=0.097  Sum_probs=116.9

Q ss_pred             HHHHHHhcCChhHHHHHhccCCC--C-ChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHHhccccch
Q 036068           12 IVSRYINRGQVDIARQCFDQMPE--R-DYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANLRAL   88 (178)
Q Consensus        12 li~~~~~~~~~~~a~~~~~~m~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~   88 (178)
                      .-..+.+.|++++|...|++..+  | +...|..+...+...|++++|...|++..+.. +-+...+..+..++.+.|++
T Consensus        25 ~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~  103 (323)
T d1fcha_          25 EGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFTNESLQ  103 (323)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccc-cccccccccccccccccccc
Confidence            55678899999999999998753  3 67789999999999999999999999988764 23567788888889999999


Q ss_pred             hhHHHHHHHHHHhCc--------------------------------------------------ccchHHHHHHHHHHH
Q 036068           89 DLGEWIKTYIDKNKV--------------------------------------------------KNDIFAGNALIDMYC  118 (178)
Q Consensus        89 ~~a~~~~~~m~~~~~--------------------------------------------------~~~~~~~~~ll~~~~  118 (178)
                      ++|.+.++.......                                                  ..+..++..+-..+.
T Consensus       104 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~~~~~~l~~~~~  183 (323)
T d1fcha_         104 RQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFN  183 (323)
T ss_dssp             HHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHH
T ss_pred             cccccchhhHHHhccchHHHHHhhhhhhhhcccccchhhHHHHHHhhHHHHHHHHHHHHHHHhhcccccccchhhHHHHH
Confidence            888887766543211                                                  123455666777788


Q ss_pred             hcCChhhhc-----------cchhhHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 036068          119 ICADVEKAQ-----------KDKFSWTTMIVGLAISGNGDKALDMFSQMLRA  159 (178)
Q Consensus       119 ~~~~~~~a~-----------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~  159 (178)
                      ..|++++|.           .+...|..+...+.+.|++++|.+.|++.++.
T Consensus       184 ~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~  235 (323)
T d1fcha_         184 LSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALEL  235 (323)
T ss_dssp             HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHhhhhcccccccccccccccchhhhhhcccccccchhHHHHHHHHHHH
Confidence            888888886           35777888889999999999999999998874

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=98.99  E-value=2.5e-08  Score=67.94  Aligned_cols=157  Identities=11%  Similarity=-0.062  Sum_probs=118.7

Q ss_pred             hhHHHHHHHHHHhcCChhHHHHHhccCCC---CChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHHh
Q 036068            6 VISWTAIVSRYINRGQVDIARQCFDQMPE---RDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTAR   82 (178)
Q Consensus         6 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~   82 (178)
                      ..+|..+-..|.+.|++++|.+.|++..+   .+..+|+.+-.+|.+.|++++|.+.|++..+.. +-+..++..+..++
T Consensus        37 a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~  115 (259)
T d1xnfa_          37 AQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELD-PTYNYAHLNRGIAL  115 (259)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHhhhchHHHHHHHHHHhhhhhhHHHHHH-hhhhhhHHHHHHHH
Confidence            34677788899999999999999998753   488899999999999999999999999998865 23466788888999


Q ss_pred             ccccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHhcCChhhhc-----------------------------------
Q 036068           83 ANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ-----------------------------------  127 (178)
Q Consensus        83 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~-----------------------------------  127 (178)
                      ...|++++|...++...+..+. +......+...+.+.+..+...                                   
T Consensus       116 ~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  194 (259)
T d1xnfa_         116 YYGGRDKLAQDDLLAFYQDDPN-DPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYLGNISEQTLMERL  194 (259)
T ss_dssp             HHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSCCCSTHHHHHHHHTTSSCHHHHHHHH
T ss_pred             HHHhhHHHHHHHHHHHHhhccc-cHHHHHHHHHHHHHhhhHHHHHHHHHHhhccchhhhhhhHHHHHHHHHHHHHHHHHH
Confidence            9999999999999988876543 2333322333333333222211                                   


Q ss_pred             ------------cchhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChh
Q 036068          128 ------------KDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEV  166 (178)
Q Consensus       128 ------------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~  166 (178)
                                  ....+|..+-..+...|++++|.+.|++.+..  .|+..
T Consensus       195 ~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~  243 (259)
T d1xnfa_         195 KADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVAN--NVHNF  243 (259)
T ss_dssp             HHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CCTTC
T ss_pred             HHHHHHhhhcCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc--CCCCH
Confidence                        13456777888999999999999999998864  56543

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.84  E-value=4e-07  Score=63.81  Aligned_cols=156  Identities=10%  Similarity=0.046  Sum_probs=122.5

Q ss_pred             CCcchhHHHHHHHHHHhcCChhHHHHHhccCCC--C-C-hhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHH
Q 036068            2 KNKDVISWTAIVSRYINRGQVDIARQCFDQMPE--R-D-YVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVS   77 (178)
Q Consensus         2 ~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~--~-~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~   77 (178)
                      ++.+...|...+....+.|+++.|..+|+++.+  | + ...|...+....+.|+.+.|.++|++..+.+. .+...|..
T Consensus        95 ~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~al~~~~-~~~~~~~~  173 (308)
T d2onda1          95 LKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDAR-TRHHVYVT  173 (308)
T ss_dssp             TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTT-CCTHHHHH
T ss_pred             CCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC-CcHHHHHH
Confidence            445667788888999999999999999998643  2 3 34788999999999999999999999887653 23344443


Q ss_pred             HHHH-hccccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHhcCChhhhc----------c-----chhhHHHHHHHHH
Q 036068           78 ILTA-RANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ----------K-----DKFSWTTMIVGLA  141 (178)
Q Consensus        78 ll~~-~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~----------~-----~~~~~~~li~~~~  141 (178)
                      .... +...++.+.|..+|+...+.. +.++..|...+..+.+.|+.+.|.          |     ....|...+.--.
T Consensus       174 ~a~~e~~~~~~~~~a~~i~e~~l~~~-p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~~~~~~~iw~~~~~fE~  252 (308)
T d2onda1         174 AALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFES  252 (308)
T ss_dssp             HHHHHHHTSCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHH
T ss_pred             HHHHHHHhccCHHHHHHHHHHHHHhh-hhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHH
Confidence            3332 344678999999999998874 346888999999999999999886          1     2346888888888


Q ss_pred             hcCChhHHHHHHHHHHHc
Q 036068          142 ISGNGDKALDMFSQMLRA  159 (178)
Q Consensus       142 ~~~~~~~a~~~~~~m~~~  159 (178)
                      ..|+.+.+..+++++.+.
T Consensus       253 ~~G~~~~~~~~~~r~~~~  270 (308)
T d2onda1         253 NIGDLASILKVEKRRFTA  270 (308)
T ss_dssp             HHSCHHHHHHHHHHHHHH
T ss_pred             HcCCHHHHHHHHHHHHHH
Confidence            899999999999998763

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.75  E-value=8.4e-07  Score=62.50  Aligned_cols=151  Identities=8%  Similarity=-0.010  Sum_probs=104.1

Q ss_pred             hHHHHHHHHHHhcCChhHHHHHhccCCC--C-ChhHHHHHHHHHhhcC-ChhHHHHHHHHhHhCCCCCcHHHHHHHHHHh
Q 036068            7 ISWTAIVSRYINRGQVDIARQCFDQMPE--R-DYVLWTAMIDGYLRVN-RFREALTLFQEMQTSNIMGDEFTIVSILTAR   82 (178)
Q Consensus         7 ~~~~~li~~~~~~~~~~~a~~~~~~m~~--~-~~~~~~~li~~~~~~~-~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~   82 (178)
                      ..|+.+-..+.+.+++++|++++++..+  | +...|+..-..+...| ++++|+..+++..+.. +-+..+|..+-..+
T Consensus        44 ~a~~~~~~~~~~~e~~~~Al~~~~~ai~lnP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~-p~~~~a~~~~~~~~  122 (315)
T d2h6fa1          44 DVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRVLV  122 (315)
T ss_dssp             HHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCchHHHHHHHHHHHHHCCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHH-HhhhhHHHHHhHHH
Confidence            3466666677777888888888887753  3 5566777777776665 4788888888876654 23567777777777


Q ss_pred             ccccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHhcCChhhhc-----------cchhhHHHHHHHHHhcCC------
Q 036068           83 ANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ-----------KDKFSWTTMIVGLAISGN------  145 (178)
Q Consensus        83 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~-----------~~~~~~~~li~~~~~~~~------  145 (178)
                      .+.|++++|.+.++...+..+. +...|..+...+.+.|++++|.           .+...|+.+...+.+.+.      
T Consensus       123 ~~l~~~~eAl~~~~kal~~dp~-n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p~n~~a~~~r~~~l~~~~~~~~~~~  201 (315)
T d2h6fa1         123 EWLRDPSQELEFIADILNQDAK-NYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAV  201 (315)
T ss_dssp             HHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSCSHHH
T ss_pred             HhhccHHHHHHHHhhhhhhhhc-chHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCCccHHHHHHHHHHHHHccccchhhh
Confidence            7888888888888887776533 5777777888888888887776           355566665555555444      


Q ss_pred             hhHHHHHHHHHHHc
Q 036068          146 GDKALDMFSQMLRA  159 (178)
Q Consensus       146 ~~~a~~~~~~m~~~  159 (178)
                      +++|++.+.+.++.
T Consensus       202 ~~~ai~~~~~al~~  215 (315)
T d2h6fa1         202 LEREVQYTLEMIKL  215 (315)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             hHHhHHHHHHHHHh
Confidence            45677777666653

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.74  E-value=1.4e-06  Score=57.00  Aligned_cols=146  Identities=12%  Similarity=-0.045  Sum_probs=103.4

Q ss_pred             HHHHHHHHHHhcCChhHHHHHhccCCCCChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHHhccccc
Q 036068            8 SWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANLRA   87 (178)
Q Consensus         8 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~   87 (178)
                      .|+. -..+...|+++.|++.|+++..++...|.-+-..|.+.|++++|.+.|++..+.. +-+...|..+-.++.+.|+
T Consensus         8 l~~~-g~~~~~~~d~~~Al~~~~~i~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ld-p~~~~a~~~~g~~~~~~g~   85 (192)
T d1hh8a_           8 LWNE-GVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEK   85 (192)
T ss_dssp             HHHH-HHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred             HHHH-HHHHHHCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHh-hhhhhhHHHHHHHHHhhcc
Confidence            3553 5667889999999999999999999999999999999999999999999988875 3467788889999999999


Q ss_pred             hhhHHHHHHHHHHhCcccchHHHHHHHHHHHhcCChhhhccchhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC
Q 036068           88 LDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKP  163 (178)
Q Consensus        88 ~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p  163 (178)
                      +++|...|+...+........       .|...|..-.. ....++..+-..+.+.|++++|.+.+.+..+....|
T Consensus        86 ~~~A~~~~~kAl~~~~~n~~~-------~~~~~~~~~~~-~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~~~  153 (192)
T d1hh8a_          86 YDLAIKDLKEALIQLRGNQLI-------DYKILGLQFKL-FACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP  153 (192)
T ss_dssp             HHHHHHHHHHHHHTTTTCSEE-------ECGGGTBCCEE-EHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG
T ss_pred             HHHHHHHHHHHHHhCccCchH-------HHHHhhhhccc-chHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence            999999998876532111000       00000000000 112334455666777788888887777766543333

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.66  E-value=1.8e-06  Score=60.39  Aligned_cols=143  Identities=12%  Similarity=0.125  Sum_probs=110.2

Q ss_pred             ChhHHHHHhccCC----CCChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHHhccccchhhHHHHHH
Q 036068           21 QVDIARQCFDQMP----ERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKT   96 (178)
Q Consensus        21 ~~~~a~~~~~~m~----~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~   96 (178)
                      ..++|..+|++..    ..+...|......+.+.|+++.|..+|+++.+.........|...+..+.+.++++.|.++|+
T Consensus        79 ~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~  158 (308)
T d2onda1          79 FSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFK  158 (308)
T ss_dssp             HHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHH
Confidence            3467778887643    236667888888999999999999999999876533335578999999999999999999999


Q ss_pred             HHHHhCcccchHHHHHHHHH-HHhcCChhhhc-----------cchhhHHHHHHHHHhcCChhHHHHHHHHHHHc-CCCC
Q 036068           97 YIDKNKVKNDIFAGNALIDM-YCICADVEKAQ-----------KDKFSWTTMIVGLAISGNGDKALDMFSQMLRA-SIKP  163 (178)
Q Consensus        97 ~m~~~~~~~~~~~~~~ll~~-~~~~~~~~~a~-----------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-g~~p  163 (178)
                      ...+.+.. +...|-..... +...|+.+.|.           .+...|...+....+.|+++.|..+|++..+. +..|
T Consensus       159 ~al~~~~~-~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~~  237 (308)
T d2onda1         159 KAREDART-RHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPP  237 (308)
T ss_dssp             HHHTSTTC-CTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCG
T ss_pred             HHHHhCCC-cHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCh
Confidence            99887643 34444443333 44467777766           36788999999999999999999999998875 3455


Q ss_pred             C
Q 036068          164 D  164 (178)
Q Consensus       164 ~  164 (178)
                      +
T Consensus       238 ~  238 (308)
T d2onda1         238 E  238 (308)
T ss_dssp             G
T ss_pred             H
Confidence            4

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.56  E-value=4.1e-06  Score=58.83  Aligned_cols=169  Identities=8%  Similarity=0.030  Sum_probs=127.9

Q ss_pred             cchhHHHHHHHHHHhcC-ChhHHHHHhccCCC---CChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHH
Q 036068            4 KDVISWTAIVSRYINRG-QVDIARQCFDQMPE---RDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSIL   79 (178)
Q Consensus         4 p~~~~~~~li~~~~~~~-~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll   79 (178)
                      -+...|+..-.++...| ++++|++.+++..+   .+..+|+.+-..+.+.|++++|+..+++..+.. +-+...|..+.
T Consensus        75 ~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~~~a~~~~~~~~~~l~~~~eAl~~~~kal~~d-p~n~~a~~~~~  153 (315)
T d2h6fa1          75 ANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQD-AKNYHAWQHRQ  153 (315)
T ss_dssp             TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred             CChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHhhccHHHHHHHHhhhhhhh-hcchHHHHHHH
Confidence            34556888888888766 59999999998653   488899999999999999999999999998875 34688999999


Q ss_pred             HHhccccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHhcCChh------hhc----------c-chhhHHHHHHHHHh
Q 036068           80 TARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVE------KAQ----------K-DKFSWTTMIVGLAI  142 (178)
Q Consensus        80 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~------~a~----------~-~~~~~~~li~~~~~  142 (178)
                      .++.+.+++++|.+.++..++..+. +...|+.+-..+.+.+...      +|.          | +...|+.+...+. 
T Consensus       154 ~~~~~~~~~~~Al~~~~~al~~~p~-n~~a~~~r~~~l~~~~~~~~~~~~~~ai~~~~~al~~~P~~~~~~~~l~~ll~-  231 (315)
T d2h6fa1         154 WVIQEFKLWDNELQYVDQLLKEDVR-NNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQ-  231 (315)
T ss_dssp             HHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHT-
T ss_pred             HHHHHHHhhHHHHHHHHHHHHHCCc-cHHHHHHHHHHHHHccccchhhhhHHhHHHHHHHHHhCCCchHHHHHHHHHHH-
Confidence            9999999999999999999998743 5777887777777766643      333          3 5677777655544 


Q ss_pred             cCChhHHHHHHHHHHHcCCCC-ChhHHHHHHhhh
Q 036068          143 SGNGDKALDMFSQMLRASIKP-DEVAYVGVLSAC  175 (178)
Q Consensus       143 ~~~~~~a~~~~~~m~~~g~~p-~~~t~~~li~a~  175 (178)
                      ....+++.+.+++..+..-.+ +...+..+...|
T Consensus       232 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~y  265 (315)
T d2h6fa1         232 DRGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIY  265 (315)
T ss_dssp             TTCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHH
T ss_pred             hcChHHHHHHHHHHHHhCCCcCCHHHHHHHHHHH
Confidence            455688888888887643222 344455555544

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.46  E-value=3.5e-06  Score=50.40  Aligned_cols=99  Identities=11%  Similarity=-0.005  Sum_probs=63.3

Q ss_pred             HHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHHhccccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHhcCCh
Q 036068           44 IDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADV  123 (178)
Q Consensus        44 i~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~  123 (178)
                      -..+.+.|++++|..+|++..+.. +-+...|..+-.++.+.|++++|...+....+.++.                   
T Consensus        10 g~~~~~~g~~~eAi~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~-------------------   69 (117)
T d1elwa_          10 GNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPD-------------------   69 (117)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-------------------
T ss_pred             HHHHHHcCCHHHHHHHHHHHHhcC-CcchhhhhcccccccccccccccchhhhhHHHhccc-------------------
Confidence            345566677777777777766654 335566777777777777777777777777665432                   


Q ss_pred             hhhccchhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhHHH
Q 036068          124 EKAQKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYV  169 (178)
Q Consensus       124 ~~a~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~  169 (178)
                           +...|..+...+...|++++|+..|++..+.  .|+...+.
T Consensus        70 -----~~~~~~~~g~~~~~~~~~~~A~~~~~~a~~~--~p~~~~~~  108 (117)
T d1elwa_          70 -----WGKGYSRKAAALEFLNRFEEAKRTYEEGLKH--EANNPQLK  108 (117)
T ss_dssp             -----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CTTCHHHH
T ss_pred             -----hhhHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHH
Confidence                 2334556666667777777777777777653  45544433

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.43  E-value=1.3e-06  Score=56.87  Aligned_cols=98  Identities=10%  Similarity=-0.015  Sum_probs=84.9

Q ss_pred             CcchhHHHHHHHHHHhcCChhHHHHHhccCC---CCChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHH
Q 036068            3 NKDVISWTAIVSRYINRGQVDIARQCFDQMP---ERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSIL   79 (178)
Q Consensus         3 ~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll   79 (178)
                      .|++..+...-..+.+.|++++|+..|++..   ..+...|..+-.+|.+.|++++|...|++..+.. +-+..+|..+-
T Consensus         1 ~~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~-p~~~~a~~~lg   79 (201)
T d2c2la1           1 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLG   79 (201)
T ss_dssp             CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHH
T ss_pred             ChhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhC-CCcHHHHHHHH
Confidence            3777888888999999999999999999764   2488889999999999999999999999987753 22577899999


Q ss_pred             HHhccccchhhHHHHHHHHHHh
Q 036068           80 TARANLRALDLGEWIKTYIDKN  101 (178)
Q Consensus        80 ~~~~~~~~~~~a~~~~~~m~~~  101 (178)
                      .++.+.|++++|...|+...+.
T Consensus        80 ~~~~~l~~~~~A~~~~~~al~l  101 (201)
T d2c2la1          80 QCQLEMESYDEAIANLQRAYSL  101 (201)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHHh
Confidence            9999999999999999987654

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.42  E-value=3.2e-06  Score=54.91  Aligned_cols=91  Identities=8%  Similarity=-0.147  Sum_probs=70.4

Q ss_pred             CChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHHhccccchhhHHHHHHHHHHhCcccchHHHHHHH
Q 036068           35 RDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALI  114 (178)
Q Consensus        35 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll  114 (178)
                      |+...+.-.-..|.+.|++++|...|++..... +-+...|..+-.+|.+.|++++|...++...+..+. .+..|..+-
T Consensus         2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~-p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~-~~~a~~~lg   79 (201)
T d2c2la1           2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ-SVKAHFFLG   79 (201)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTT-CHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCC-cHHHHHHHH
Confidence            455566667788899999999999999987765 446778889999999999999999999998876432 355666666


Q ss_pred             HHHHhcCChhhhc
Q 036068          115 DMYCICADVEKAQ  127 (178)
Q Consensus       115 ~~~~~~~~~~~a~  127 (178)
                      .+|.+.|++++|.
T Consensus        80 ~~~~~l~~~~~A~   92 (201)
T d2c2la1          80 QCQLEMESYDEAI   92 (201)
T ss_dssp             HHHHHTTCHHHHH
T ss_pred             HHHHHCCCHHHHH
Confidence            6666666666664

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.42  E-value=2e-06  Score=51.54  Aligned_cols=101  Identities=12%  Similarity=0.058  Sum_probs=84.6

Q ss_pred             HHHHHHHHhcCChhHHHHHhccCCC---CChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHHhcccc
Q 036068           10 TAIVSRYINRGQVDIARQCFDQMPE---RDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANLR   86 (178)
Q Consensus        10 ~~li~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~   86 (178)
                      ..--..+.+.|++++|...|++..+   .+...|..+-.+|.+.|++++|...+.+..+.+ +.+...|..+..++...|
T Consensus         7 ~~~g~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~g~~~~~~~   85 (117)
T d1elwa_           7 KEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAALEFLN   85 (117)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhcCCcchhhhhcccccccccccccccchhhhhHHHhc-cchhhHHHHHHHHHHHcc
Confidence            3455678899999999999999753   377889999999999999999999999998876 457888999999999999


Q ss_pred             chhhHHHHHHHHHHhCcccchHHHHH
Q 036068           87 ALDLGEWIKTYIDKNKVKNDIFAGNA  112 (178)
Q Consensus        87 ~~~~a~~~~~~m~~~~~~~~~~~~~~  112 (178)
                      ++++|...++...+..+. ++..+..
T Consensus        86 ~~~~A~~~~~~a~~~~p~-~~~~~~~  110 (117)
T d1elwa_          86 RFEEAKRTYEEGLKHEAN-NPQLKEG  110 (117)
T ss_dssp             CHHHHHHHHHHHHTTCTT-CHHHHHH
T ss_pred             CHHHHHHHHHHHHHhCCC-CHHHHHH
Confidence            999999999999886543 3444433

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.35  E-value=7.5e-06  Score=51.53  Aligned_cols=94  Identities=13%  Similarity=0.019  Sum_probs=79.3

Q ss_pred             HHHHHHHHHhcCChhHHHHHhccCCC---CChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHHhccc
Q 036068            9 WTAIVSRYINRGQVDIARQCFDQMPE---RDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANL   85 (178)
Q Consensus         9 ~~~li~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~   85 (178)
                      +...-..+.+.|++++|...|++..+   .+...|..+-..|...|++++|.+.|++..+.. +-+...|..+..++...
T Consensus        13 l~~~gn~~~~~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~-p~~~~a~~~~g~~~~~~   91 (159)
T d1a17a_          13 LKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMAL   91 (159)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHcCCHHHHHHHhhhccccchhhhhhhhhhHHHHHhccccchHHHHHHHHHHHc-ccchHHHHHHHHHHHHc
Confidence            44556678899999999999998753   377788889999999999999999999988765 33567888999999999


Q ss_pred             cchhhHHHHHHHHHHhCc
Q 036068           86 RALDLGEWIKTYIDKNKV  103 (178)
Q Consensus        86 ~~~~~a~~~~~~m~~~~~  103 (178)
                      |++++|...++...+..+
T Consensus        92 g~~~eA~~~~~~a~~~~p  109 (159)
T d1a17a_          92 GKFRAALRDYETVVKVKP  109 (159)
T ss_dssp             TCHHHHHHHHHHHHHHST
T ss_pred             CCHHHHHHHHHHHHHcCC
Confidence            999999999999888763

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.31  E-value=1.1e-05  Score=50.68  Aligned_cols=84  Identities=10%  Similarity=-0.019  Sum_probs=68.0

Q ss_pred             HHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHHhccccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHhcC
Q 036068           42 AMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICA  121 (178)
Q Consensus        42 ~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~  121 (178)
                      ..-..|.+.|++++|...|++..+.. +-+...|..+-.++.+.|++++|.+.|+...+..+. +..+|..+...|...|
T Consensus        15 ~~gn~~~~~~~y~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~-~~~a~~~~g~~~~~~g   92 (159)
T d1a17a_          15 TQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKK-YIKGYYRRAASNMALG   92 (159)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHcCCHHHHHHHhhhccccc-hhhhhhhhhhHHHHHhccccchHHHHHHHHHHHccc-chHHHHHHHHHHHHcC
Confidence            34457789999999999999998875 446788888999999999999999999999887643 5567777777777777


Q ss_pred             Chhhhc
Q 036068          122 DVEKAQ  127 (178)
Q Consensus       122 ~~~~a~  127 (178)
                      ++++|.
T Consensus        93 ~~~eA~   98 (159)
T d1a17a_          93 KFRAAL   98 (159)
T ss_dssp             CHHHHH
T ss_pred             CHHHHH
Confidence            777775

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.29  E-value=9.6e-06  Score=56.09  Aligned_cols=152  Identities=6%  Similarity=-0.087  Sum_probs=111.1

Q ss_pred             HHHHHHHHHHhcCChhHHHHHhccCCC-----C----ChhHHHHHHHHHhhcCChhHHHHHHHHhHh----CCC-CCcHH
Q 036068            8 SWTAIVSRYINRGQVDIARQCFDQMPE-----R----DYVLWTAMIDGYLRVNRFREALTLFQEMQT----SNI-MGDEF   73 (178)
Q Consensus         8 ~~~~li~~~~~~~~~~~a~~~~~~m~~-----~----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~----~~~-~~~~~   73 (178)
                      .|......|...|++++|.+.|.+..+     .    -..+|..+-..|.+.|++++|.+.+++..+    .|. .....
T Consensus        39 ~y~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~  118 (290)
T d1qqea_          39 LCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGAN  118 (290)
T ss_dssp             HHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHH
Confidence            588888899999999999999987643     1    235788889999999999999999997543    221 11234


Q ss_pred             HHHHHHHHh-ccccchhhHHHHHHHHHHh----Cccc-chHHHHHHHHHHHhcCChhhhc----------cch-------
Q 036068           74 TIVSILTAR-ANLRALDLGEWIKTYIDKN----KVKN-DIFAGNALIDMYCICADVEKAQ----------KDK-------  130 (178)
Q Consensus        74 ~~~~ll~~~-~~~~~~~~a~~~~~~m~~~----~~~~-~~~~~~~ll~~~~~~~~~~~a~----------~~~-------  130 (178)
                      ++..+...| ...+++++|.+.++...+.    +-++ ...++..+...|.+.|++++|.          ++.       
T Consensus       119 ~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~  198 (290)
T d1qqea_         119 FKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSL  198 (290)
T ss_dssp             HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGH
T ss_pred             HHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhH
Confidence            566666666 4569999999999876542    2222 2456788899999999999998          111       


Q ss_pred             -hhHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 036068          131 -FSWTTMIVGLAISGNGDKALDMFSQMLRA  159 (178)
Q Consensus       131 -~~~~~li~~~~~~~~~~~a~~~~~~m~~~  159 (178)
                       ..+...+..+...|+++.|.+.+++..+.
T Consensus       199 ~~~~~~~~~~~l~~~d~~~A~~~~~~~~~~  228 (290)
T d1qqea_         199 KDYFLKKGLCQLAATDAVAAARTLQEGQSE  228 (290)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHGGGCC
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence             12344555667889999999999998764

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=98.27  E-value=2e-06  Score=51.09  Aligned_cols=87  Identities=7%  Similarity=-0.043  Sum_probs=61.7

Q ss_pred             HHHHHHHhcCChhHHHHHhccCCC--C-ChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHHhccccc
Q 036068           11 AIVSRYINRGQVDIARQCFDQMPE--R-DYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANLRA   87 (178)
Q Consensus        11 ~li~~~~~~~~~~~a~~~~~~m~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~   87 (178)
                      ..-..+.+.|++++|...|++..+  | +...|..+-..+.+.|++++|...|++..+.. +-+...+..+..++...|+
T Consensus        21 ~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~la~~y~~~g~   99 (112)
T d1hxia_          21 EEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNEHN   99 (112)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhhHHHHHHHhhhcccccccchhhhhhhhhhhhhhhHHHhhcccccccccc-cccccchHHHHHHHHHCCC
Confidence            345566777888888777777653  3 56677777777777788888888777776654 2346677777777777778


Q ss_pred             hhhHHHHHHHH
Q 036068           88 LDLGEWIKTYI   98 (178)
Q Consensus        88 ~~~a~~~~~~m   98 (178)
                      +++|.+.+++.
T Consensus       100 ~~~A~~~l~~~  110 (112)
T d1hxia_         100 ANAALASLRAW  110 (112)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            87777777654

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.26  E-value=8e-06  Score=49.27  Aligned_cols=107  Identities=14%  Similarity=0.073  Sum_probs=74.8

Q ss_pred             HHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHHhcccc---chhhHHHHHHHHHHhCcccchHHHHHHHHHH
Q 036068           41 TAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANLR---ALDLGEWIKTYIDKNKVKNDIFAGNALIDMY  117 (178)
Q Consensus        41 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~---~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~  117 (178)
                      ..|+..+...+++++|.+.|++....+ +.+..++..+..++.+.+   ++++|..+++.+.+....|+.          
T Consensus         3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~~-p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~----------   71 (122)
T d1nzna_           3 EAVLNELVSVEDLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQ----------   71 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHH----------
T ss_pred             HHHHHHhcCHHHHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchH----------
Confidence            456777888888899999898888765 446677777888887644   455688888877765543321          


Q ss_pred             HhcCChhhhccchhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhHHHHHH
Q 036068          118 CICADVEKAQKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVL  172 (178)
Q Consensus       118 ~~~~~~~~a~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li  172 (178)
                                  ..+|..+-.+|.+.|++++|.+.|++.++.  .|+..-...+.
T Consensus        72 ------------~~~~~~Lg~~y~~~g~~~~A~~~~~~aL~~--~P~~~~A~~l~  112 (122)
T d1nzna_          72 ------------RDYVFYLAVGNYRLKEYEKALKYVRGLLQT--EPQNNQAKELE  112 (122)
T ss_dssp             ------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHH
T ss_pred             ------------HHHHHHHHHHHHHHhhhHHHHHHHHHHHHh--CcCCHHHHHHH
Confidence                        124556677778888888888888888874  57665544443

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.24  E-value=2.1e-05  Score=51.19  Aligned_cols=119  Identities=10%  Similarity=-0.052  Sum_probs=92.8

Q ss_pred             CCcchhHHHHHHHHHHhcCChhHHHHHhccCCC---CChhHHHHHHHHHhhcCChhHHHHHHHHhHhC------------
Q 036068            2 KNKDVISWTAIVSRYINRGQVDIARQCFDQMPE---RDYVLWTAMIDGYLRVNRFREALTLFQEMQTS------------   66 (178)
Q Consensus         2 ~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~------------   66 (178)
                      .+|++.+|..+-..+.+.|++++|.+.|++..+   .+...|..+-.+|.+.|++++|.+-|++-...            
T Consensus        32 ~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~~~a~~~~g~~~~~~g~~~~A~~~~~kAl~~~~~n~~~~~~~~  111 (192)
T d1hh8a_          32 QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKIL  111 (192)
T ss_dssp             SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGG
T ss_pred             CCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhhhhhHHHHHHHHHhhccHHHHHHHHHHHHHhCccCchHHHHHh
Confidence            467888999999999999999999999998753   47778999999999999999999999986542            


Q ss_pred             CCC--Cc-HHHHHHHHHHhccccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHhc
Q 036068           67 NIM--GD-EFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC  120 (178)
Q Consensus        67 ~~~--~~-~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~  120 (178)
                      |..  ++ ..++..+-.++.+.|++++|.+.+....+....+........+..+.+.
T Consensus       112 ~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~~~~~~~~~~Al~~~~~~  168 (192)
T d1hh8a_         112 GLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPRHSKIDKAMECVWKQ  168 (192)
T ss_dssp             TBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSGGGGHHHHHHHHHHTT
T ss_pred             hhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhh
Confidence            111  11 2456667778899999999999998888777666555555555555443

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=98.18  E-value=9.2e-06  Score=48.12  Aligned_cols=89  Identities=16%  Similarity=0.021  Sum_probs=68.8

Q ss_pred             HHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHHhccccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHhcCC
Q 036068           43 MIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICAD  122 (178)
Q Consensus        43 li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~  122 (178)
                      +-..+.+.|++++|...|++..+.. +-+...|..+-.++.+.+++++|...++...+..+.                  
T Consensus        22 ~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~------------------   82 (112)
T d1hxia_          22 EGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK------------------   82 (112)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------------------
T ss_pred             HHHHHHHHhhhHHHHHHHhhhcccc-cccchhhhhhhhhhhhhhhHHHhhcccccccccccc------------------
Confidence            4556778899999999999988765 225788888999999999999999999988876533                  


Q ss_pred             hhhhccchhhHHHHHHHHHhcCChhHHHHHHHHH
Q 036068          123 VEKAQKDKFSWTTMIVGLAISGNGDKALDMFSQM  156 (178)
Q Consensus       123 ~~~a~~~~~~~~~li~~~~~~~~~~~a~~~~~~m  156 (178)
                            +...|..+...|...|++++|.+.+++.
T Consensus        83 ------~~~a~~~la~~y~~~g~~~~A~~~l~~~  110 (112)
T d1hxia_          83 ------DIAVHAALAVSHTNEHNANAALASLRAW  110 (112)
T ss_dssp             ------CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ------cccchHHHHHHHHHCCCHHHHHHHHHHH
Confidence                  2344566666777777777777777764

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.13  E-value=2e-05  Score=47.75  Aligned_cols=110  Identities=5%  Similarity=-0.033  Sum_probs=80.2

Q ss_pred             HHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHHhccccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHh
Q 036068           40 WTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCI  119 (178)
Q Consensus        40 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~  119 (178)
                      +..+-..+.+.|++++|+..|++..+.+ +.+...+..+-.+|.+.|++++|.+.++..++.... +...+..+..    
T Consensus         7 ~k~~G~~~~~~~~y~~Ai~~y~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~-~~~~~~~~a~----   80 (128)
T d1elra_           7 EKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRE-NREDYRQIAK----   80 (128)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH-STTCHHHHHH----
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcc-cHHHHHHHHH----
Confidence            3455667889999999999999988875 346788888999999999999999999988765432 2222333333    


Q ss_pred             cCChhhhccchhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhHHH
Q 036068          120 CADVEKAQKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYV  169 (178)
Q Consensus       120 ~~~~~~a~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~  169 (178)
                                  +|..+-..+...+++++|++.|++-...  .|+.....
T Consensus        81 ------------~~~~lg~~~~~~~~~~~A~~~~~kal~~--~~~~~~~~  116 (128)
T d1elra_          81 ------------AYARIGNSYFKEEKYKDAIHFYNKSLAE--HRTPDVLK  116 (128)
T ss_dssp             ------------HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHH
T ss_pred             ------------HHHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCHHHHH
Confidence                        3445556667789999999999887764  35544433

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=98.12  E-value=0.00017  Score=48.27  Aligned_cols=121  Identities=8%  Similarity=-0.184  Sum_probs=92.2

Q ss_pred             ChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHHhccccchhhHHHHHHHHHHhCcccchHHHHHHHH
Q 036068           36 DYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALID  115 (178)
Q Consensus        36 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~  115 (178)
                      ...+|..+-..|.+.|++++|.+.|++..+.. +-+..+|..+-.++.+.|++++|...|+...+..+. +..++..+-.
T Consensus        36 ~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~  113 (259)
T d1xnfa_          36 RAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPT-YNYAHLNRGI  113 (259)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHhhccC-CCCHHHHhhhchHHHHHHHHHHhhhhhhHHHHHHhh-hhhhHHHHHH
Confidence            44567777889999999999999999988764 336788999999999999999999999999987643 5677888888


Q ss_pred             HHHhcCChhhhc----------c-chhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 036068          116 MYCICADVEKAQ----------K-DKFSWTTMIVGLAISGNGDKALDMFSQMLR  158 (178)
Q Consensus       116 ~~~~~~~~~~a~----------~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~  158 (178)
                      .|...|++++|.          | +......+..++.+.+..+.+..+......
T Consensus       114 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (259)
T d1xnfa_         114 ALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK  167 (259)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred             HHHHHhhHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhhhHHHHHHHHHHhhc
Confidence            899999999887          2 333333344455556666666555555554

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.07  E-value=3.8e-05  Score=49.39  Aligned_cols=97  Identities=8%  Similarity=-0.043  Sum_probs=80.3

Q ss_pred             HHHHHHhcCChhHHHHHhccCCC----C---------------------ChhHHHHHHHHHhhcCChhHHHHHHHHhHhC
Q 036068           12 IVSRYINRGQVDIARQCFDQMPE----R---------------------DYVLWTAMIDGYLRVNRFREALTLFQEMQTS   66 (178)
Q Consensus        12 li~~~~~~~~~~~a~~~~~~m~~----~---------------------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~   66 (178)
                      .-......|++++|.+.|.+...    +                     ....+..+...+.+.|++++|...+++..+.
T Consensus        17 ~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~~~~~~w~~~~r~~l~~~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~   96 (179)
T d2ff4a2          17 AGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELEALTFE   96 (179)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHhhCcccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHh
Confidence            34577889999999888876432    0                     2245778899999999999999999999887


Q ss_pred             CCCCcHHHHHHHHHHhccccchhhHHHHHHHHH-----HhCcccchHH
Q 036068           67 NIMGDEFTIVSILTARANLRALDLGEWIKTYID-----KNKVKNDIFA  109 (178)
Q Consensus        67 ~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~-----~~~~~~~~~~  109 (178)
                      . +-+...|..++.++.+.|+.++|.+.|+.+.     +.|++|+..+
T Consensus        97 ~-P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l  143 (179)
T d2ff4a2          97 H-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL  143 (179)
T ss_dssp             S-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred             C-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHHH
Confidence            6 4578999999999999999999999998874     4699998765

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.04  E-value=7.3e-06  Score=49.45  Aligned_cols=94  Identities=7%  Similarity=0.029  Sum_probs=76.7

Q ss_pred             HHHHHHHHhcCChhHHHHHhccCCC---CChhHHHHHHHHHhhcCC---hhHHHHHHHHhHhCCCCCc-HHHHHHHHHHh
Q 036068           10 TAIVSRYINRGQVDIARQCFDQMPE---RDYVLWTAMIDGYLRVNR---FREALTLFQEMQTSNIMGD-EFTIVSILTAR   82 (178)
Q Consensus        10 ~~li~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~---~~~a~~~~~~m~~~~~~~~-~~~~~~ll~~~   82 (178)
                      ..+++.+...+++++|.+.|++..+   .+..++..+-.++.+.++   .++|.++|++..+.+..|+ ..++..+-.+|
T Consensus         3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y   82 (122)
T d1nzna_           3 EAVLNELVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGN   82 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhcCHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHH
Confidence            4678889999999999999998764   477788888888887554   5579999999887654444 24677888999


Q ss_pred             ccccchhhHHHHHHHHHHhCc
Q 036068           83 ANLRALDLGEWIKTYIDKNKV  103 (178)
Q Consensus        83 ~~~~~~~~a~~~~~~m~~~~~  103 (178)
                      .+.|++++|.+.|+...+..+
T Consensus        83 ~~~g~~~~A~~~~~~aL~~~P  103 (122)
T d1nzna_          83 YRLKEYEKALKYVRGLLQTEP  103 (122)
T ss_dssp             HHTTCHHHHHHHHHHHHHHCT
T ss_pred             HHHhhhHHHHHHHHHHHHhCc
Confidence            999999999999999999753

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.98  E-value=4.3e-05  Score=53.59  Aligned_cols=145  Identities=10%  Similarity=0.008  Sum_probs=99.2

Q ss_pred             CChhHHHHHhccCCC---CChhHHHHHHHHHhhcC--ChhHHHHHHHHhHhCCCCCcHHHHH-HHHHHhccccchhhHHH
Q 036068           20 GQVDIARQCFDQMPE---RDYVLWTAMIDGYLRVN--RFREALTLFQEMQTSNIMGDEFTIV-SILTARANLRALDLGEW   93 (178)
Q Consensus        20 ~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~--~~~~a~~~~~~m~~~~~~~~~~~~~-~ll~~~~~~~~~~~a~~   93 (178)
                      |++++|+.++++..+   .+...|..+..++...+  ++++|...+++..+.. +++...+. ..-..+...+.+++|..
T Consensus        87 ~~~~~al~~~~~~l~~~pk~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~Al~  165 (334)
T d1dcea1          87 ALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELA  165 (334)
T ss_dssp             HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhCCCcHHHHHHhhHHHHHhccccHHHHHHHHHHHHhhC-chhhhhhhhHHHHHHHhccccHHHHH
Confidence            346677777776542   35566666666655554  4678888888877654 23344443 33356667778888888


Q ss_pred             HHHHHHHhCcccchHHHHHHHHHHHhcCChhhhc----------------------------------------------
Q 036068           94 IKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ----------------------------------------------  127 (178)
Q Consensus        94 ~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~----------------------------------------------  127 (178)
                      .++...+..+. +...|+.+-..+.+.|++++|.                                              
T Consensus       166 ~~~~~i~~~p~-~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~a~~~~~~~l~~~~~~~~~  244 (334)
T d1dcea1         166 FTDSLITRNFS-NYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPLFR  244 (334)
T ss_dssp             HHHTTTTTTCC-CHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCSSS
T ss_pred             HHHHHHHcCCC-CHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCcchhhH
Confidence            88777776643 5677777777788888777664                                              


Q ss_pred             -----------------------------cchhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhHH
Q 036068          128 -----------------------------KDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAY  168 (178)
Q Consensus       128 -----------------------------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~  168 (178)
                                                   .+...|..+...+...|++++|.+.|++.++.  .|+..-|
T Consensus       245 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~l--dP~~~~y  312 (334)
T d1dcea1         245 CELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAV--DPMRAAY  312 (334)
T ss_dssp             CCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHH--CGGGHHH
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--CcccHHH
Confidence                                         14566777788888999999999999998874  5754433

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.96  E-value=0.00025  Score=45.41  Aligned_cols=117  Identities=18%  Similarity=0.210  Sum_probs=71.3

Q ss_pred             ChhHHHHHH---HHHhhcCChhHHHHHHHHhHhC--CCCCcHHHHHHHHHHhccccchhhHHHHHHHHHHhCcccchHHH
Q 036068           36 DYVLWTAMI---DGYLRVNRFREALTLFQEMQTS--NIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAG  110 (178)
Q Consensus        36 ~~~~~~~li---~~~~~~~~~~~a~~~~~~m~~~--~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~  110 (178)
                      |...|..+.   ......|++++|.+.|.+-...  |-...            .....+-+...-..+..    .....+
T Consensus         7 D~~~f~~~~~~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~------------~~~~~~w~~~~r~~l~~----~~~~a~   70 (179)
T d2ff4a2           7 DLGRFVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLD------------DLRDFQFVEPFATALVE----DKVLAH   70 (179)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTG------------GGTTSTTHHHHHHHHHH----HHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccccc------------cCcchHHHHHHHHHHHH----HHHHHH
Confidence            334444444   4677889999999999997663  21100            00000001111111111    113345


Q ss_pred             HHHHHHHHhcCChhhhc-----------cchhhHHHHHHHHHhcCChhHHHHHHHHHHH-----cCCCCChhHH
Q 036068          111 NALIDMYCICADVEKAQ-----------KDKFSWTTMIVGLAISGNGDKALDMFSQMLR-----ASIKPDEVAY  168 (178)
Q Consensus       111 ~~ll~~~~~~~~~~~a~-----------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~-----~g~~p~~~t~  168 (178)
                      ..+...+.+.|++++|.           .+...|..++.++.+.|+.++|++.|+++.+     -|+.|+..+-
T Consensus        71 ~~la~~~~~~g~~~~Al~~~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l~  144 (179)
T d2ff4a2          71 TAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLR  144 (179)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHH
T ss_pred             HHHHHHHHHCCCchHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHHHH
Confidence            55555666666666655           3677899999999999999999999999843     5999998763

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.94  E-value=0.0001  Score=50.70  Aligned_cols=121  Identities=12%  Similarity=-0.058  Sum_probs=91.1

Q ss_pred             HHHHHHHHHhhcCChhHHHHHHHHhHhC----CCCC-cHHHHHHHHHHhccccchhhHHHHHHHHHHhC-----cccchH
Q 036068           39 LWTAMIDGYLRVNRFREALTLFQEMQTS----NIMG-DEFTIVSILTARANLRALDLGEWIKTYIDKNK-----VKNDIF  108 (178)
Q Consensus        39 ~~~~li~~~~~~~~~~~a~~~~~~m~~~----~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~-----~~~~~~  108 (178)
                      .|.-.-..|...+++++|.+.|.+..+.    +-.+ -..+|..+..+|.+.|++++|.+.++...+..     ......
T Consensus        39 ~y~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~  118 (290)
T d1qqea_          39 LCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGAN  118 (290)
T ss_dssp             HHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHH
Confidence            3556677888999999999999987542    2222 24678889999999999999999998765432     122245


Q ss_pred             HHHHHHHHHHh-cCChhhhc-------------c----chhhHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 036068          109 AGNALIDMYCI-CADVEKAQ-------------K----DKFSWTTMIVGLAISGNGDKALDMFSQMLRA  159 (178)
Q Consensus       109 ~~~~ll~~~~~-~~~~~~a~-------------~----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~  159 (178)
                      ++..+...|-. .|++++|.             .    -..+|..+...+...|++++|.+.|++....
T Consensus       119 ~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~  187 (290)
T d1qqea_         119 FKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKS  187 (290)
T ss_dssp             HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHh
Confidence            56666666644 69999987             0    2445788899999999999999999998875

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=97.94  E-value=7.2e-05  Score=51.09  Aligned_cols=111  Identities=10%  Similarity=-0.050  Sum_probs=76.0

Q ss_pred             HhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHHhccccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHhcCChhhh
Q 036068           47 YLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKA  126 (178)
Q Consensus        47 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a  126 (178)
                      ..+.|++++|...+++..+.. +-+...+..+...++..|++++|...++...+..+. +...+..+-..+...+..+++
T Consensus         6 aL~~G~l~eAl~~l~~al~~~-P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~-~~~~~~~l~~ll~a~~~~~~a   83 (264)
T d1zbpa1           6 ALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPE-YLPGASQLRHLVKAAQARKDF   83 (264)
T ss_dssp             HTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGG-GHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHhccccHHH
Confidence            346688888888888887775 446778888888888888888888888888776543 234444444444333333333


Q ss_pred             c------------cchhhHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 036068          127 Q------------KDKFSWTTMIVGLAISGNGDKALDMFSQMLRA  159 (178)
Q Consensus       127 ~------------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~  159 (178)
                      .            ++...+......+.+.|+.++|.++++++.+.
T Consensus        84 ~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~  128 (264)
T d1zbpa1          84 AQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL  128 (264)
T ss_dssp             TTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc
Confidence            2            12233344456677889999999999998874

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.88  E-value=9e-05  Score=47.02  Aligned_cols=105  Identities=10%  Similarity=0.030  Sum_probs=77.8

Q ss_pred             HHHHHHHHHHhcCChhHHHHHhccCCC-----C-------------ChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCC
Q 036068            8 SWTAIVSRYINRGQVDIARQCFDQMPE-----R-------------DYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIM   69 (178)
Q Consensus         8 ~~~~li~~~~~~~~~~~a~~~~~~m~~-----~-------------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~   69 (178)
                      .+...-..+.+.|++++|...|.+..+     +             -..+|+-+-.+|.+.|++++|...+++..+.. +
T Consensus        15 ~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~~~~A~~~~~~al~~~-p   93 (170)
T d1p5qa1          15 IVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELD-S   93 (170)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-T
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHHhhhhcccccchhhhhhhcc-c
Confidence            344555678899999999999976531     0             22356667778889999999999999888765 3


Q ss_pred             CcHHHHHHHHHHhccccchhhHHHHHHHHHHhCcccchHHHHHHH
Q 036068           70 GDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALI  114 (178)
Q Consensus        70 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll  114 (178)
                      -+...+..+..++...|++++|...|+...+..+. +..+...+-
T Consensus        94 ~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~-n~~~~~~l~  137 (170)
T d1p5qa1          94 NNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPN-NKAAKTQLA  137 (170)
T ss_dssp             TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS-CHHHHHHHH
T ss_pred             cchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCC-CHHHHHHHH
Confidence            36788888888999999999999999988886532 444444433

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=97.85  E-value=0.00011  Score=45.72  Aligned_cols=104  Identities=6%  Similarity=0.025  Sum_probs=79.9

Q ss_pred             HHHHHHHHHHhcCChhHHHHHhccCCC--------C-----------ChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCC
Q 036068            8 SWTAIVSRYINRGQVDIARQCFDQMPE--------R-----------DYVLWTAMIDGYLRVNRFREALTLFQEMQTSNI   68 (178)
Q Consensus         8 ~~~~li~~~~~~~~~~~a~~~~~~m~~--------~-----------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~   68 (178)
                      .+..--..+.+.|++.+|...|.+...        +           ...+|+-+..+|.+.|++++|++.+++..+.. 
T Consensus        19 ~~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Al~~~~~al~~~-   97 (153)
T d2fbna1          19 DIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKID-   97 (153)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCcchhhhhhHHHHHhhhhHHHHHHhhHHHHHHHhcccchhhhhhhcccccc-
Confidence            445556778899999999998886431        1           23466678888899999999999999988775 


Q ss_pred             CCcHHHHHHHHHHhccccchhhHHHHHHHHHHhCcccchHHHHHH
Q 036068           69 MGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNAL  113 (178)
Q Consensus        69 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l  113 (178)
                      +.+..+|..+..++...|++++|...|+...+..+. +..+...+
T Consensus        98 p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~-n~~~~~~l  141 (153)
T d2fbna1          98 KNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPN-NLDIRNSY  141 (153)
T ss_dssp             TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT-CHHHHHHH
T ss_pred             chhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHH
Confidence            447789999999999999999999999998887643 34444443

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.85  E-value=0.00044  Score=43.67  Aligned_cols=87  Identities=9%  Similarity=0.004  Sum_probs=55.8

Q ss_pred             HHHHHHHHhhcCChhHHHHHHHHhHhCC-----CCC---------cHHHHHHHHHHhccccchhhHHHHHHHHHHhCccc
Q 036068           40 WTAMIDGYLRVNRFREALTLFQEMQTSN-----IMG---------DEFTIVSILTARANLRALDLGEWIKTYIDKNKVKN  105 (178)
Q Consensus        40 ~~~li~~~~~~~~~~~a~~~~~~m~~~~-----~~~---------~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~  105 (178)
                      +...-..+.+.|++++|...|++..+.-     ...         -..+|+.+..+|.+.|++++|...++..++..+. 
T Consensus        16 l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~~~~A~~~~~~al~~~p~-   94 (170)
T d1p5qa1          16 VKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSN-   94 (170)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHHhhhhcccccchhhhhhhcccc-
Confidence            3444567888999999999998876431     110         1245666777788888888888888888776532 


Q ss_pred             chHHHHHHHHHHHhcCChhhhc
Q 036068          106 DIFAGNALIDMYCICADVEKAQ  127 (178)
Q Consensus       106 ~~~~~~~ll~~~~~~~~~~~a~  127 (178)
                      ++..+..+-.+|...|++++|.
T Consensus        95 ~~~a~~~~g~~~~~~g~~~~A~  116 (170)
T d1p5qa1          95 NEKGLSRRGEAHLAVNDFELAR  116 (170)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHH
T ss_pred             chhhhHHHHHHHHHhhhHHHHH
Confidence            3444444444455555444443

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.85  E-value=0.00012  Score=46.25  Aligned_cols=107  Identities=8%  Similarity=0.023  Sum_probs=80.6

Q ss_pred             HHHHHHHHHhcCChhHHHHHhccCCC-------------------CChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCC
Q 036068            9 WTAIVSRYINRGQVDIARQCFDQMPE-------------------RDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIM   69 (178)
Q Consensus         9 ~~~li~~~~~~~~~~~a~~~~~~m~~-------------------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~   69 (178)
                      +......+.+.|++++|+..|.+..+                   .+...|..+-..+.+.|++++|+..+++..+.. +
T Consensus        30 ~~~~~~~~~~~~~y~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~-p  108 (169)
T d1ihga1          30 LKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEID-P  108 (169)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-T
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhChhhHHHHHHHHHHHHhhcccchhhhhhhhhhhhh-h
Confidence            44556678889999999888876531                   144456667788889999999999999988765 3


Q ss_pred             CcHHHHHHHHHHhccccchhhHHHHHHHHHHhCcccchHHHHHHHHHH
Q 036068           70 GDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMY  117 (178)
Q Consensus        70 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~  117 (178)
                      -+...|..+-.++.+.|++++|.+.|+...+..+. +..+...+-...
T Consensus       109 ~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~-n~~~~~~l~~~~  155 (169)
T d1ihga1         109 SNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPE-DKAIQAELLKVK  155 (169)
T ss_dssp             TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred             hhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHH
Confidence            46778888899999999999999999988887543 445555554443

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=97.80  E-value=0.00098  Score=41.22  Aligned_cols=108  Identities=11%  Similarity=0.016  Sum_probs=70.6

Q ss_pred             HHHHHHHHHhhcCChhHHHHHHHHhHhCCC----CCc-----------HHHHHHHHHHhccccchhhHHHHHHHHHHhCc
Q 036068           39 LWTAMIDGYLRVNRFREALTLFQEMQTSNI----MGD-----------EFTIVSILTARANLRALDLGEWIKTYIDKNKV  103 (178)
Q Consensus        39 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~----~~~-----------~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~  103 (178)
                      .+..--..+.+.|++++|...|.+..+.-.    .++           ..+|+.+..+|.+.|++++|.+.++...+..+
T Consensus        19 ~~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Al~~~~~al~~~p   98 (153)
T d2fbna1          19 DIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDK   98 (153)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCcchhhhhhHHHHHhhhhHHHHHHhhHHHHHHHhcccchhhhhhhccccccc
Confidence            344455677889999999999988764210    011           23445555566666666666666666555432


Q ss_pred             ccchHHHHHHHHHHHhcCChhhhccchhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhHHHHHH
Q 036068          104 KNDIFAGNALIDMYCICADVEKAQKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVL  172 (178)
Q Consensus       104 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li  172 (178)
                                              .++.+|..+..++...|++++|...|++.++.  .|+.......+
T Consensus        99 ------------------------~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l--~P~n~~~~~~l  141 (153)
T d2fbna1          99 ------------------------NNVKALYKLGVANMYFGFLEEAKENLYKAASL--NPNNLDIRNSY  141 (153)
T ss_dssp             ------------------------TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--STTCHHHHHHH
T ss_pred             ------------------------hhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHH
Confidence                                    24556777888888888888999999888864  47655444443

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=97.71  E-value=0.0012  Score=45.27  Aligned_cols=94  Identities=9%  Similarity=-0.053  Sum_probs=58.4

Q ss_pred             hHHHHHHHHHHhcCChhHHHHHhccCCC-----C----ChhHHHHHHHHHhhcCChhHHHHHHHHhHh----CCCC--Cc
Q 036068            7 ISWTAIVSRYINRGQVDIARQCFDQMPE-----R----DYVLWTAMIDGYLRVNRFREALTLFQEMQT----SNIM--GD   71 (178)
Q Consensus         7 ~~~~~li~~~~~~~~~~~a~~~~~~m~~-----~----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~----~~~~--~~   71 (178)
                      ..+..+...+...|++++|.+.|++..+     +    ....+..+...+...|++..+...+.+...    .+..  +.
T Consensus        52 ~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~  131 (366)
T d1hz4a_          52 VATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPM  131 (366)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhH
Confidence            4567778888899999999998887642     1    223455556667777777777777766432    1111  11


Q ss_pred             -HHHHHHHHHHhccccchhhHHHHHHHHHH
Q 036068           72 -EFTIVSILTARANLRALDLGEWIKTYIDK  100 (178)
Q Consensus        72 -~~~~~~ll~~~~~~~~~~~a~~~~~~m~~  100 (178)
                       ...+..+-..+...|+++.+...+.....
T Consensus       132 ~~~~~~~la~~~~~~~~~~~a~~~~~~~~~  161 (366)
T d1hz4a_         132 HEFLVRIRAQLLWAWARLDEAEASARSGIE  161 (366)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhcchhhhHHHHHHHHH
Confidence             22444455566667777777666655543

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.68  E-value=0.0001  Score=44.45  Aligned_cols=95  Identities=8%  Similarity=0.005  Sum_probs=75.9

Q ss_pred             HHHHHHHHHHhcCChhHHHHHhccCCC---CChhHHHHHHHHHhhcCChhHHHHHHHHhHhCC---CC--Cc-HHHHHHH
Q 036068            8 SWTAIVSRYINRGQVDIARQCFDQMPE---RDYVLWTAMIDGYLRVNRFREALTLFQEMQTSN---IM--GD-EFTIVSI   78 (178)
Q Consensus         8 ~~~~li~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~---~~--~~-~~~~~~l   78 (178)
                      .+..+-..+.+.|++++|++.|++..+   .+...|..+-.+|.+.|++++|...+++..+..   ..  +. ..+|..+
T Consensus         6 ~~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~l   85 (128)
T d1elra_           6 KEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARI   85 (128)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHH
Confidence            355667789999999999999998753   478889999999999999999999999976532   11  11 2467777


Q ss_pred             HHHhccccchhhHHHHHHHHHHhC
Q 036068           79 LTARANLRALDLGEWIKTYIDKNK  102 (178)
Q Consensus        79 l~~~~~~~~~~~a~~~~~~m~~~~  102 (178)
                      -..+...+++++|.+.+.......
T Consensus        86 g~~~~~~~~~~~A~~~~~kal~~~  109 (128)
T d1elra_          86 GNSYFKEEKYKDAIHFYNKSLAEH  109 (128)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHhCCHHHHHHHHHHHHhcC
Confidence            788888899999999998777654

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=97.61  E-value=0.00072  Score=46.49  Aligned_cols=151  Identities=9%  Similarity=-0.066  Sum_probs=107.3

Q ss_pred             HHHHHHHHHHhcCChhHHHHHhccCCC--------CChhHHHHHHHHHhhcCChhHHHHHHHHhHh----CCCCCc--HH
Q 036068            8 SWTAIVSRYINRGQVDIARQCFDQMPE--------RDYVLWTAMIDGYLRVNRFREALTLFQEMQT----SNIMGD--EF   73 (178)
Q Consensus         8 ~~~~li~~~~~~~~~~~a~~~~~~m~~--------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~----~~~~~~--~~   73 (178)
                      .+..+...+...|+++.+...+.+...        .....+..+...+...++..++...+.+...    .+..+.  ..
T Consensus       135 ~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~  214 (366)
T d1hz4a_         135 LVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISN  214 (366)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHH
T ss_pred             HHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHH
Confidence            455667788899999999888876542        1344556666777788888888888776533    111111  23


Q ss_pred             HHHHHHHHhccccchhhHHHHHHHHHHhCcc---cchHHHHHHHHHHHhcCChhhhc-----------------cchhhH
Q 036068           74 TIVSILTARANLRALDLGEWIKTYIDKNKVK---NDIFAGNALIDMYCICADVEKAQ-----------------KDKFSW  133 (178)
Q Consensus        74 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~---~~~~~~~~ll~~~~~~~~~~~a~-----------------~~~~~~  133 (178)
                      .+......+...+++++|...+....+....   .....+..+...|...|++++|.                 .....+
T Consensus       215 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~  294 (366)
T d1hz4a_         215 ANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNL  294 (366)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHH
Confidence            4555666778889999999998876654322   22445666788899999999887                 134567


Q ss_pred             HHHHHHHHhcCChhHHHHHHHHHHH
Q 036068          134 TTMIVGLAISGNGDKALDMFSQMLR  158 (178)
Q Consensus       134 ~~li~~~~~~~~~~~a~~~~~~m~~  158 (178)
                      ..+-..|.+.|++++|.+.+++.++
T Consensus       295 ~~la~~~~~~g~~~~A~~~l~~Al~  319 (366)
T d1hz4a_         295 LLLNQLYWQAGRKSDAQRVLLDALK  319 (366)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            7778889999999999999988764

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=97.56  E-value=0.00049  Score=43.30  Aligned_cols=94  Identities=9%  Similarity=0.029  Sum_probs=73.4

Q ss_pred             HHHHHHHHHHhcCChhHHHHHhccCCC-------C-----------ChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCC
Q 036068            8 SWTAIVSRYINRGQVDIARQCFDQMPE-------R-----------DYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIM   69 (178)
Q Consensus         8 ~~~~li~~~~~~~~~~~a~~~~~~m~~-------~-----------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~   69 (178)
                      .+.-.-..+.+.|++.+|...|++...       .           ....|+-+-.+|.+.|++++|+..+++..+.. +
T Consensus        17 ~~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~-p   95 (168)
T d1kt1a1          17 IVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD-S   95 (168)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-T
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhccchhhhhhcchhHHHHHHhHHHHHHHhhhcccchhhhhhhhhcc-c
Confidence            455566778899999999999876431       0           22345556677888999999999999988765 4


Q ss_pred             CcHHHHHHHHHHhccccchhhHHHHHHHHHHhC
Q 036068           70 GDEFTIVSILTARANLRALDLGEWIKTYIDKNK  102 (178)
Q Consensus        70 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~  102 (178)
                      .+...|.....++...|++++|...|+...+..
T Consensus        96 ~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~  128 (168)
T d1kt1a1          96 ANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN  128 (168)
T ss_dssp             TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC
T ss_pred             chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence            577888888899999999999999999988765

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.43  E-value=0.0022  Score=40.14  Aligned_cols=101  Identities=7%  Similarity=0.015  Sum_probs=64.9

Q ss_pred             HHHHHHHHhhcCChhHHHHHHHHhHhC--------------CCC-CcHHHHHHHHHHhccccchhhHHHHHHHHHHhCcc
Q 036068           40 WTAMIDGYLRVNRFREALTLFQEMQTS--------------NIM-GDEFTIVSILTARANLRALDLGEWIKTYIDKNKVK  104 (178)
Q Consensus        40 ~~~li~~~~~~~~~~~a~~~~~~m~~~--------------~~~-~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~  104 (178)
                      +...-..+.+.|++++|+..|++..+.              .+. .....+..+-.++.+.|++++|...++..++..+ 
T Consensus        30 ~~~~~~~~~~~~~y~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p-  108 (169)
T d1ihga1          30 LKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDP-  108 (169)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCT-
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhChhhHHHHHHHHHHHHhhcccchhhhhhhhhhhhhh-
Confidence            444556677889999999888776431              011 1233444555566666666666666666655432 


Q ss_pred             cchHHHHHHHHHHHhcCChhhhccchhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChh
Q 036068          105 NDIFAGNALIDMYCICADVEKAQKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEV  166 (178)
Q Consensus       105 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~  166 (178)
                                             .+...|..+..++.+.|++++|.+.|++.++.  .|+..
T Consensus       109 -----------------------~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l--~p~n~  145 (169)
T d1ihga1         109 -----------------------SNTKALYRRAQGWQGLKEYDQALADLKKAQEI--APEDK  145 (169)
T ss_dssp             -----------------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCH
T ss_pred             -----------------------hhhhHHHhHHHHHHHccCHHHHHHHHHHHHHh--CCCCH
Confidence                                   23455677777888888888888888888874  45443

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.36  E-value=0.0009  Score=49.55  Aligned_cols=144  Identities=7%  Similarity=-0.153  Sum_probs=84.7

Q ss_pred             HHHHHHHHHHhcCChhHHHHHhccCCCCC-hhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHHhcccc
Q 036068            8 SWTAIVSRYINRGQVDIARQCFDQMPERD-YVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANLR   86 (178)
Q Consensus         8 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~   86 (178)
                      .+..+-..+.+.|+.+.|...+++..+++ ..++..+-..+...|++++|...|++..+.. +-+...|+.+-..+...|
T Consensus       122 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~-P~~~~~~~~Lg~~~~~~~  200 (497)
T d1ya0a1         122 KSSQLGIISNKQTHTSAIVKPQSSSCSYICQHCLVHLGDIARYRNQTSQAESYYRHAAQLV-PSNGQPYNQLAILASSKG  200 (497)
T ss_dssp             ---------------------CCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTBSHHHHHHHHHHHHTT
T ss_pred             HHHHhHHHHHhCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCchHHHHHHHHHHHHcC
Confidence            34444444445555555554444332222 2356667778888999999999999987764 335689999999999999


Q ss_pred             chhhHHHHHHHHHHhCcccchHHHHHHHHHHHhcCChhhhcc------c-hhhHHHHHHHHHhcCChhHHHHHH
Q 036068           87 ALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQK------D-KFSWTTMIVGLAISGNGDKALDMF  153 (178)
Q Consensus        87 ~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~------~-~~~~~~li~~~~~~~~~~~a~~~~  153 (178)
                      +..+|...|.+-.... +|-+.++..|...+.+.....++.+      + ...+..+...+....+++...++.
T Consensus       201 ~~~~A~~~y~ral~~~-~~~~~a~~nL~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~l~~~~~~~~~~~~~  273 (497)
T d1ya0a1         201 DHLTTIFYYCRSIAVK-FPFPAASTNLQKALSKALESRDEVKTKWGVSDFIKAFIKFHGHVYLSKSLEKLSPLR  273 (497)
T ss_dssp             CHHHHHHHHHHHHSSS-BCCHHHHHHHHHHHHHHTTSCCCCCSSCCHHHHHHHHHHHHHHHHHTCCGGGHHHHH
T ss_pred             CHHHHHHHHHHHHhCC-CCCHHHHHHHHHHHHHhhhhhhhhccccccchHHHHHHHHHHHHHhCCchhhHHHHH
Confidence            9999999998888766 4568889999988888766555442      1 222333334444555555444443

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=97.33  E-value=0.0033  Score=39.32  Aligned_cols=89  Identities=7%  Similarity=-0.068  Sum_probs=55.0

Q ss_pred             hHHHHHHHHHhhcCChhHHHHHHHHhHhC---CCCC-----------cHHHHHHHHHHhccccchhhHHHHHHHHHHhCc
Q 036068           38 VLWTAMIDGYLRVNRFREALTLFQEMQTS---NIMG-----------DEFTIVSILTARANLRALDLGEWIKTYIDKNKV  103 (178)
Q Consensus        38 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~---~~~~-----------~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~  103 (178)
                      ..+.-.-..+.+.|++++|...|++....   ...+           ....|+.+-.++.+.+++++|...++...+..+
T Consensus        16 ~~~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p   95 (168)
T d1kt1a1          16 AIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDS   95 (168)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhccchhhhhhcchhHHHHHHhHHHHHHHhhhcccchhhhhhhhhccc
Confidence            34556667888999999999999885431   1111           123455566677888888888888888777653


Q ss_pred             ccchHHHHHHHHHHHhcCChhhhc
Q 036068          104 KNDIFAGNALIDMYCICADVEKAQ  127 (178)
Q Consensus       104 ~~~~~~~~~ll~~~~~~~~~~~a~  127 (178)
                       .+...|..+-.+|...|++++|.
T Consensus        96 -~~~~a~~~~~~~~~~l~~~~~A~  118 (168)
T d1kt1a1          96 -ANEKGLYRRGEAQLLMNEFESAK  118 (168)
T ss_dssp             -TCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             -chHHHHHHHHHHHHHcCCHHHHH
Confidence             23444444444444444444443

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=97.22  E-value=0.0018  Score=39.98  Aligned_cols=105  Identities=16%  Similarity=0.097  Sum_probs=69.8

Q ss_pred             hHHHHH--HHHHhhcCChhHHHHHHHHhHhCC-CCCc----------HHHHHHHHHHhccccchhhHHHHHHHHHHhCc-
Q 036068           38 VLWTAM--IDGYLRVNRFREALTLFQEMQTSN-IMGD----------EFTIVSILTARANLRALDLGEWIKTYIDKNKV-  103 (178)
Q Consensus        38 ~~~~~l--i~~~~~~~~~~~a~~~~~~m~~~~-~~~~----------~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~-  103 (178)
                      .+|..+  ...+.+.|++++|+..|++..+.. -.|+          ...|+.+-.+|.+.|++++|.+.++...+... 
T Consensus         8 ~a~~~l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~   87 (156)
T d2hr2a1           8 GAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNR   87 (156)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccc
Confidence            456666  445667799999999999976531 1122          45788888899999999999988877664211 


Q ss_pred             --ccchHHHHHHHHHHHhcCChhhhccchhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 036068          104 --KNDIFAGNALIDMYCICADVEKAQKDKFSWTTMIVGLAISGNGDKALDMFSQMLR  158 (178)
Q Consensus       104 --~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~  158 (178)
                        .........                ....++.+-..|...|++++|.+.|++.++
T Consensus        88 ~~~~~~~~~~~----------------~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~  128 (156)
T d2hr2a1          88 RGELNQDEGKL----------------WISAVYSRALALDGLGRGAEAMPEFKKVVE  128 (156)
T ss_dssp             HCCTTSTHHHH----------------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             cccccccccch----------------hHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence              111111100                122456677888888999999988888664

>d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Clathrin heavy chain proximal leg segment
domain: Clathrin heavy chain proximal leg segment
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.11  E-value=0.019  Score=40.12  Aligned_cols=83  Identities=10%  Similarity=-0.018  Sum_probs=51.5

Q ss_pred             ChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHHhccccchhhHHHHHHHHHHhCcccchHHHHHHHH
Q 036068           36 DYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALID  115 (178)
Q Consensus        36 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~  115 (178)
                      +..+|..+...+.+......+     ++...+...+......++..|-..|.+++...+++..... -..+...++-++.
T Consensus        68 ~~~~~k~~~~~l~~~~e~~la-----~i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~-~~~~~~~~~~L~~  141 (336)
T d1b89a_          68 STRTWKEVCFACVDGKEFRLA-----QMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTELAI  141 (336)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHH-----HHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS-TTCCHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHhCcHHHHH-----HHHHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcC-CccchHHHHHHHH
Confidence            334454555554444333222     1222333445566677888888888888888888876543 2456778889999


Q ss_pred             HHHhcCChh
Q 036068          116 MYCICADVE  124 (178)
Q Consensus       116 ~~~~~~~~~  124 (178)
                      .|++.+.-.
T Consensus       142 lyak~~~~k  150 (336)
T d1b89a_         142 LYSKFKPQK  150 (336)
T ss_dssp             HHHTTCHHH
T ss_pred             HHHHhChHH
Confidence            999876543

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=96.93  E-value=0.0057  Score=37.63  Aligned_cols=95  Identities=17%  Similarity=0.065  Sum_probs=71.2

Q ss_pred             hhHHHHH--HHHHHhcCChhHHHHHhccCCC-----C----------ChhHHHHHHHHHhhcCChhHHHHHHHHhHhC--
Q 036068            6 VISWTAI--VSRYINRGQVDIARQCFDQMPE-----R----------DYVLWTAMIDGYLRVNRFREALTLFQEMQTS--   66 (178)
Q Consensus         6 ~~~~~~l--i~~~~~~~~~~~a~~~~~~m~~-----~----------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~--   66 (178)
                      ..+|..+  .....+.|++++|++.|++..+     |          ....|+.+-.+|.+.|++++|..-+++..+.  
T Consensus         7 a~a~~~l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~   86 (156)
T d2hr2a1           7 VGAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFN   86 (156)
T ss_dssp             HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhccc
Confidence            3467766  5566678999999999987642     1          2357888999999999999999999887542  


Q ss_pred             ---CCCCc-----HHHHHHHHHHhccccchhhHHHHHHHHHH
Q 036068           67 ---NIMGD-----EFTIVSILTARANLRALDLGEWIKTYIDK  100 (178)
Q Consensus        67 ---~~~~~-----~~~~~~ll~~~~~~~~~~~a~~~~~~m~~  100 (178)
                         ...++     ...+..+-.+|.+.|++++|...|+...+
T Consensus        87 ~~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~  128 (156)
T d2hr2a1          87 RRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE  128 (156)
T ss_dssp             HHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             ccccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence               11122     23566678889999999999999987664

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.73  E-value=0.017  Score=39.73  Aligned_cols=136  Identities=8%  Similarity=-0.035  Sum_probs=87.6

Q ss_pred             HHHHHHhcCChhHHHHHhccCCC--CC-hhHHHH---HHHHHh-------hcCChhHHHHHHHHhHhCCCCCcHHHHHHH
Q 036068           12 IVSRYINRGQVDIARQCFDQMPE--RD-YVLWTA---MIDGYL-------RVNRFREALTLFQEMQTSNIMGDEFTIVSI   78 (178)
Q Consensus        12 li~~~~~~~~~~~a~~~~~~m~~--~~-~~~~~~---li~~~~-------~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l   78 (178)
                      ++...-+.+..++|.+++++..+  |+ ...|+.   ++..+.       ..|++++|+.++++..+.. +-+...|..+
T Consensus        35 ~~~~~~~~~~~~~al~~~~~~l~~~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~-pk~~~~~~~~  113 (334)
T d1dcea1          35 VFQKRQAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHR  113 (334)
T ss_dssp             HHHHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred             HHHHHhcccccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhC-CCcHHHHHHh
Confidence            33333333445789999997753  53 334433   222222       2345788999999987765 2255566666


Q ss_pred             HHHhcccc--chhhHHHHHHHHHHhCcccchHHHH-HHHHHHHhcCChhhhc-----------cchhhHHHHHHHHHhcC
Q 036068           79 LTARANLR--ALDLGEWIKTYIDKNKVKNDIFAGN-ALIDMYCICADVEKAQ-----------KDKFSWTTMIVGLAISG  144 (178)
Q Consensus        79 l~~~~~~~--~~~~a~~~~~~m~~~~~~~~~~~~~-~ll~~~~~~~~~~~a~-----------~~~~~~~~li~~~~~~~  144 (178)
                      ..++...+  +++++...++...+.... ....+. ..-..+...+..++|.           .+...|+.+...+.+.|
T Consensus       114 ~~~~~~~~~~~~~~a~~~~~~al~~~~~-~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~p~~~~a~~~l~~~~~~~~  192 (334)
T d1dcea1         114 CWLLSRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLH  192 (334)
T ss_dssp             HHHHHTCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHS
T ss_pred             hHHHHHhccccHHHHHHHHHHHHhhCch-hhhhhhhHHHHHHHhccccHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhc
Confidence            55555554  578899999988887644 344444 4446677788888877           36778888888888888


Q ss_pred             ChhHH
Q 036068          145 NGDKA  149 (178)
Q Consensus       145 ~~~~a  149 (178)
                      ++++|
T Consensus       193 ~~~~A  197 (334)
T d1dcea1         193 PQPDS  197 (334)
T ss_dssp             CCCCS
T ss_pred             CHHHH
Confidence            77655

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=96.59  E-value=0.0062  Score=37.11  Aligned_cols=113  Identities=17%  Similarity=0.030  Sum_probs=71.7

Q ss_pred             HhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHHhccc----------cchhhHHHHHHHHHHhCcccchHHHHHHHHH
Q 036068           47 YLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANL----------RALDLGEWIKTYIDKNKVKNDIFAGNALIDM  116 (178)
Q Consensus        47 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~----------~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~  116 (178)
                      |-+.+.+++|...|++..+.. +-+...+..+-.++...          +.+++|...++...+..+. +..+|..+-..
T Consensus         7 ~~r~~~fe~A~~~~e~al~~~-P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~-~~~a~~~lG~~   84 (145)
T d1zu2a1           7 FDRILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPK-KDEAVWCIGNA   84 (145)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred             HHHHccHHHHHHHHHHHHhhC-CcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcch-hhHHHhhHHHH
Confidence            344556888888888887765 34556666666666543          3456788888888877643 46677777776


Q ss_pred             HHhcCChhhhccchhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhHHHHHHhhh
Q 036068          117 YCICADVEKAQKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC  175 (178)
Q Consensus       117 ~~~~~~~~~a~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~a~  175 (178)
                      |...|.....   ..         ...+.+++|.+.|++..+.  .|+..+|..-+.-+
T Consensus        85 y~~~g~~~~~---~~---------~~~~~~~~A~~~~~kal~l--~P~~~~~~~~L~~~  129 (145)
T d1zu2a1          85 YTSFAFLTPD---ET---------EAKHNFDLATQFFQQAVDE--QPDNTHYLKSLEMT  129 (145)
T ss_dssp             HHHHHHHCCC---HH---------HHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHH
T ss_pred             HHHcccchhh---HH---------HHHHhHHHhhhhhhccccc--CCCHHHHHHHHHHH
Confidence            7665543311   00         0123467788888887754  68777777666544

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=96.47  E-value=0.00057  Score=46.49  Aligned_cols=110  Identities=10%  Similarity=-0.030  Sum_probs=66.9

Q ss_pred             HHhcCChhHHHHHhccCC--CC-ChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcH-HHHHHHHHHhccccchhhH
Q 036068           16 YINRGQVDIARQCFDQMP--ER-DYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDE-FTIVSILTARANLRALDLG   91 (178)
Q Consensus        16 ~~~~~~~~~a~~~~~~m~--~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~-~~~~~ll~~~~~~~~~~~a   91 (178)
                      ..+.|++++|++.+++..  +| |...+..+...|+..|++++|.+.|++..+..  |+. ..+..+...+...+..+++
T Consensus         6 aL~~G~l~eAl~~l~~al~~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~--P~~~~~~~~l~~ll~a~~~~~~a   83 (264)
T d1zbpa1           6 ALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLF--PEYLPGASQLRHLVKAAQARKDF   83 (264)
T ss_dssp             HTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--GGGHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHhccccHHH
Confidence            456899999999999875  33 88899999999999999999999999988763  543 3333333333222222221


Q ss_pred             HHHHHHHHHhCcccchHHHHHHHHHHHhcCChhhhc
Q 036068           92 EWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ  127 (178)
Q Consensus        92 ~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~  127 (178)
                      ..-...-...+.++....+......+.+.|+.++|.
T Consensus        84 ~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~  119 (264)
T d1zbpa1          84 AQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVS  119 (264)
T ss_dssp             TTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred             HHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHH
Confidence            111000000111222233334455677788888775

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.38  E-value=0.027  Score=31.34  Aligned_cols=62  Identities=5%  Similarity=-0.148  Sum_probs=40.6

Q ss_pred             HHHHHHhhcCChhHHHHHHHHhHhC-----CCCC-cHHHHHHHHHHhccccchhhHHHHHHHHHHhCc
Q 036068           42 AMIDGYLRVNRFREALTLFQEMQTS-----NIMG-DEFTIVSILTARANLRALDLGEWIKTYIDKNKV  103 (178)
Q Consensus        42 ~li~~~~~~~~~~~a~~~~~~m~~~-----~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~  103 (178)
                      .+-..+.+.|++++|...|++..+.     ...+ ...++..+-.++.+.|++++|...+++..+..+
T Consensus        10 ~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P   77 (95)
T d1tjca_          10 ELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDP   77 (95)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCc
Confidence            3455666777777777777765432     1111 245677777777888888888888877777654

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.19  E-value=0.012  Score=32.84  Aligned_cols=61  Identities=7%  Similarity=-0.039  Sum_probs=50.0

Q ss_pred             hHHHHHHHHHHhcCChhHHHHHhccCCC---------C-ChhHHHHHHHHHhhcCChhHHHHHHHHhHhCC
Q 036068            7 ISWTAIVSRYINRGQVDIARQCFDQMPE---------R-DYVLWTAMIDGYLRVNRFREALTLFQEMQTSN   67 (178)
Q Consensus         7 ~~~~~li~~~~~~~~~~~a~~~~~~m~~---------~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~   67 (178)
                      ..+-.+-..+.+.|+++.|...|++..+         + ...+++.|-.++.+.|++++|.+.+++..+..
T Consensus         6 ddc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~   76 (95)
T d1tjca_           6 EDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELD   76 (95)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhC
Confidence            3444678889999999999999887642         1 24578889999999999999999999998864

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.13  E-value=0.021  Score=41.92  Aligned_cols=99  Identities=7%  Similarity=-0.066  Sum_probs=42.0

Q ss_pred             HHHHHHHHHhccccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHhcCChhhhc-----------cchhhHHHHHHHHH
Q 036068           73 FTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ-----------KDKFSWTTMIVGLA  141 (178)
Q Consensus        73 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~-----------~~~~~~~~li~~~~  141 (178)
                      ..+..+-..+.+.++.++|...+....+..  + ...+..+-..+...|++++|.           .+..+|+.|-..+.
T Consensus       121 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--~-~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~~~~~~~~Lg~~~~  197 (497)
T d1ya0a1         121 VKSSQLGIISNKQTHTSAIVKPQSSSCSYI--C-QHCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILAS  197 (497)
T ss_dssp             ----------------------CCHHHHHH--H-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHH
T ss_pred             HHHHHhHHHHHhCCCHHHHHHHHHHHhCCC--H-HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCchHHHHHHHHHHH
Confidence            344444445555555555555444333211  1 133444555555566666655           24566777777777


Q ss_pred             hcCChhHHHHHHHHHHHcCCCCChhHHHHHHhhh
Q 036068          142 ISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC  175 (178)
Q Consensus       142 ~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~a~  175 (178)
                      ..|+..+|...|.+.+... .|-...+..|...+
T Consensus       198 ~~~~~~~A~~~y~ral~~~-~~~~~a~~nL~~~~  230 (497)
T d1ya0a1         198 SKGDHLTTIFYYCRSIAVK-FPFPAASTNLQKAL  230 (497)
T ss_dssp             HTTCHHHHHHHHHHHHSSS-BCCHHHHHHHHHHH
T ss_pred             HcCCHHHHHHHHHHHHhCC-CCCHHHHHHHHHHH
Confidence            7777777777777666543 34445555555444

>d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Hypothetical protein ST1625
family: Hypothetical protein ST1625
domain: Hypothetical protein ST1625
species: Archaeon Sulfolobus tokodaii [TaxId: 111955]

Probab=95.86  E-value=0.073  Score=31.57  Aligned_cols=68  Identities=12%  Similarity=-0.077  Sum_probs=51.7

Q ss_pred             ChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHHhccccchhhHHHHHHHHHHhCcc
Q 036068           36 DYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVK  104 (178)
Q Consensus        36 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~  104 (178)
                      +...++..+..+.+.|.-++-.++++.+.+.+ .|++.....+..+|.+.|+..++.+++.+.-+.|.+
T Consensus        85 ~se~vdlALd~lv~~~kkd~Ld~i~~~l~kn~-~i~~~~llkia~A~kkig~~re~nell~~ACe~G~K  152 (161)
T d1wy6a1          85 LNEHVNKALDILVIQGKRDKLEEIGREILKNN-EVSASILVAIANALRRVGDERDATTLLIEACKKGEK  152 (161)
T ss_dssp             CCHHHHHHHHHHHHTTCHHHHHHHHHHHC--C-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred             hHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhHH
Confidence            55567777788888888888888888866644 677778888888888888888888888888777765

>d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Cytochrome c oxidase subunit E
family: Cytochrome c oxidase subunit E
domain: Cytochrome c oxidase subunit E
species: Cow (Bos taurus) [TaxId: 9913]

Probab=95.29  E-value=0.099  Score=29.28  Aligned_cols=71  Identities=11%  Similarity=-0.002  Sum_probs=54.7

Q ss_pred             HHHhhcC--ChhHHHHHHHHhHhCCCCCcHHHHHHHHHHhccccchhhHHHHHHHHHHhCcccchHHHHHHHHH
Q 036068           45 DGYLRVN--RFREALTLFQEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDM  116 (178)
Q Consensus        45 ~~~~~~~--~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~  116 (178)
                      ..|...-  +.=++.+.++.+....+.|+.....+.+++|.+.+++..|.++++..+... ..+...|..+++-
T Consensus        12 ~~~F~~~~iD~we~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~K~-~~~k~~y~yilqe   84 (105)
T d1v54e_          12 VTYFNKPDIDAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVIQE   84 (105)
T ss_dssp             HHHHTCTTCCHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHHHH
T ss_pred             HHHhcCcCccHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh-cCcHHHHHHHHHH
Confidence            3444433  444677788888899999999999999999999999999999999887543 2345577776653

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=95.27  E-value=0.022  Score=34.49  Aligned_cols=85  Identities=16%  Similarity=0.043  Sum_probs=58.0

Q ss_pred             HHhcCChhHHHHHhccCC--CC-ChhHHHHHHHHHhhc----------CChhHHHHHHHHhHhCCCCCcHHHHHHHHHHh
Q 036068           16 YINRGQVDIARQCFDQMP--ER-DYVLWTAMIDGYLRV----------NRFREALTLFQEMQTSNIMGDEFTIVSILTAR   82 (178)
Q Consensus        16 ~~~~~~~~~a~~~~~~m~--~~-~~~~~~~li~~~~~~----------~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~   82 (178)
                      |-+.+.+++|...|+...  .| +...+..+-.++...          +.+++|...|++..+.. +-+..+|..+-.+|
T Consensus         7 ~~r~~~fe~A~~~~e~al~~~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~-P~~~~a~~~lG~~y   85 (145)
T d1zu2a1           7 FDRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID-PKKDEAVWCIGNAY   85 (145)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred             HHHHccHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhc-chhhHHHhhHHHHH
Confidence            345677899999999875  34 666666666666543          44578999999988765 33567888787777


Q ss_pred             ccccc-----------hhhHHHHHHHHHHh
Q 036068           83 ANLRA-----------LDLGEWIKTYIDKN  101 (178)
Q Consensus        83 ~~~~~-----------~~~a~~~~~~m~~~  101 (178)
                      ...|+           +++|.+.|+...+.
T Consensus        86 ~~~g~~~~~~~~~~~~~~~A~~~~~kal~l  115 (145)
T d1zu2a1          86 TSFAFLTPDETEAKHNFDLATQFFQQAVDE  115 (145)
T ss_dssp             HHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHcccchhhHHHHHHhHHHhhhhhhccccc
Confidence            66543           45566666665554

>d2nsza1 a.118.1.14 (A:322-450) Programmed cell death 4, PDCD4 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: MIF4G domain-like
domain: Programmed cell death 4, PDCD4
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.29  E-value=0.25  Score=29.13  Aligned_cols=66  Identities=12%  Similarity=0.259  Sum_probs=40.9

Q ss_pred             HHHHHHHHHhcCChhHHHHHhccCCCCC---hhHHHHHHHHHhhcCCh--hHHHHHHHHhHhCCCCCcHHH
Q 036068            9 WTAIVSRYINRGQVDIARQCFDQMPERD---YVLWTAMIDGYLRVNRF--REALTLFQEMQTSNIMGDEFT   74 (178)
Q Consensus         9 ~~~li~~~~~~~~~~~a~~~~~~m~~~~---~~~~~~li~~~~~~~~~--~~a~~~~~~m~~~~~~~~~~~   74 (178)
                      ...++.-|...|+.++|...++++..|.   ...+..+..++-+.++-  +.+..++..+...|+.+....
T Consensus        10 ~~~ll~EY~~~~D~~Ea~~~l~eL~~p~~~~e~V~~~i~~ale~~~~~r~~~~~~Ll~~L~~~~~is~~~i   80 (129)
T d2nsza1          10 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQM   80 (129)
T ss_dssp             HHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHH
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHHcCCchhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHCCCCCHHHH
Confidence            4667777888888888888888777652   23344444454454443  234667777777776554444

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=93.47  E-value=0.57  Score=30.46  Aligned_cols=95  Identities=7%  Similarity=0.026  Sum_probs=58.8

Q ss_pred             chhHHHHHHHHHHhcCChhHHHHHhccCCC-CChhHHHHHHHHHhh----cCChhHHHHHHHHhHhCCCCCcHHHHHHHH
Q 036068            5 DVISWTAIVSRYINRGQVDIARQCFDQMPE-RDYVLWTAMIDGYLR----VNRFREALTLFQEMQTSNIMGDEFTIVSIL   79 (178)
Q Consensus         5 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~-~~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll   79 (178)
                      |+..+..|-..+.+.+++++|.+.|++.-+ .|...+-.|-..|..    ..+...|...+..-...+. |...  ..+.
T Consensus         1 ~p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~~-~~a~--~~l~   77 (265)
T d1ouva_           1 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNY-SNGC--HLLG   77 (265)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC-HHHH--HHHH
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcchhHHHHHHhhcccccccc-cchh--hccc
Confidence            456677788888899999999999998753 355555555555554    4577778877777666552 2222  2222


Q ss_pred             HH----hccccchhhHHHHHHHHHHhC
Q 036068           80 TA----RANLRALDLGEWIKTYIDKNK  102 (178)
Q Consensus        80 ~~----~~~~~~~~~a~~~~~~m~~~~  102 (178)
                      ..    .....+.+.|...++...+.|
T Consensus        78 ~~~~~~~~~~~~~~~a~~~~~~a~~~g  104 (265)
T d1ouva_          78 NLYYSGQGVSQNTNKALQYYSKACDLK  104 (265)
T ss_dssp             HHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred             cccccccccchhhHHHHHHHhhhhhhh
Confidence            22    223345566666666555544

>d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Clathrin heavy chain proximal leg segment
domain: Clathrin heavy chain proximal leg segment
species: Cow (Bos taurus) [TaxId: 9913]

Probab=93.38  E-value=0.77  Score=31.69  Aligned_cols=119  Identities=10%  Similarity=0.044  Sum_probs=81.7

Q ss_pred             ChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHHhccccchhhHHHHHHHHHHh-C-ccc--------
Q 036068           36 DYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKN-K-VKN--------  105 (178)
Q Consensus        36 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~-~-~~~--------  105 (178)
                      +......++..|...|.+++...++....... ..+...++.++..|++.+..    ++.+.+... + +.+        
T Consensus        98 ~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~~-~~~~~~~~~L~~lyak~~~~----kl~e~l~~~s~~y~~~k~~~~c~  172 (336)
T d1b89a_          98 HADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQ----KMREHLELFWSRVNIPKVLRAAE  172 (336)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHH----HHHHHHHHHSTTSCHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHcCChHHHHHHHHHHHcCC-ccchHHHHHHHHHHHHhChH----HHHHHHHhccccCCHHHHHHHHH
Confidence            44455678999999999999999999865432 45677888899999886432    333333331 1 111        


Q ss_pred             chHHHHHHHHHHHhcCChhhhc-------cchhhHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 036068          106 DIFAGNALIDMYCICADVEKAQ-------KDKFSWTTMIVGLAISGNGDKALDMFSQMLRA  159 (178)
Q Consensus       106 ~~~~~~~ll~~~~~~~~~~~a~-------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~  159 (178)
                      ....|.-++..|.+.|+++.|.       ++..-...++..+.+.++.+...++..-.++.
T Consensus       173 ~~~l~~elv~Ly~~~~~~~~A~~~~i~~~~~~~~~~~f~e~~~k~~N~e~~~~~i~~yL~~  233 (336)
T d1b89a_         173 QAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYLEF  233 (336)
T ss_dssp             TTTCHHHHHHHHHHTTCHHHHHHHHHHSTTTTCCHHHHHHHHHHCSSTHHHHHHHHHHHHH
T ss_pred             HcCChHHHHHHHHhcCCHHHHHHHHHHcchhhhhHHHHHHHHHccCChHHHHHHHHHHHHc
Confidence            1223677888999999999887       34444566777788888887777777666653

>d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Hypothetical protein ST1625
family: Hypothetical protein ST1625
domain: Hypothetical protein ST1625
species: Archaeon Sulfolobus tokodaii [TaxId: 111955]

Probab=92.30  E-value=0.59  Score=27.60  Aligned_cols=109  Identities=13%  Similarity=0.029  Sum_probs=65.5

Q ss_pred             HHhcCChhHHHHHhccCCC-CChhHHHHHHHHHhhcCChhHHHHHHHHhHhC-CCC----------------CcHHHHHH
Q 036068           16 YINRGQVDIARQCFDQMPE-RDYVLWTAMIDGYLRVNRFREALTLFQEMQTS-NIM----------------GDEFTIVS   77 (178)
Q Consensus        16 ~~~~~~~~~a~~~~~~m~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-~~~----------------~~~~~~~~   77 (178)
                      +...|.+++..+++.+... .+..-||=+|.-....-+-+..++.++.+-+. .+.                -+..-+..
T Consensus        12 ~ildG~ve~Gveii~k~~~ss~~~E~NW~ICNiidt~dC~~v~~~Ld~IG~~FDls~C~Nlk~vv~C~~~~n~~se~vdl   91 (161)
T d1wy6a1          12 FLLDGYIDEGVKIVLEITKSSTKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLDKCQNLKSVVECGVINNTLNEHVNK   91 (161)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHSCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGGGCSCTHHHHHHHHHTTCCCHHHHH
T ss_pred             HHHhhhHHhHHHHHHHHcccCCccccceeeeecccccchHHHHHHHHHHhhhcCchhhhcHHHHHHHHHHhcchHHHHHH
Confidence            4567888888888887764 45666666665555555555555555554321 111                12233455


Q ss_pred             HHHHhccccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHhcCChhh
Q 036068           78 ILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEK  125 (178)
Q Consensus        78 ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~  125 (178)
                      .++...+.|+-+.-.++++.+.+.+ ++++...-.+-.+|.+.|...+
T Consensus        92 ALd~lv~~~kkd~Ld~i~~~l~kn~-~i~~~~llkia~A~kkig~~re  138 (161)
T d1wy6a1          92 ALDILVIQGKRDKLEEIGREILKNN-EVSASILVAIANALRRVGDERD  138 (161)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHC--C-CSCHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHhccHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcchhh
Confidence            6677777778888888888777754 5556655555666666665554

>d1ug3a1 a.118.1.14 (A:1235-1427) Eukaryotic initiation factor eIF4G {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: MIF4G domain-like
domain: Eukaryotic initiation factor eIF4G
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.57  E-value=0.95  Score=28.47  Aligned_cols=143  Identities=8%  Similarity=-0.035  Sum_probs=84.9

Q ss_pred             HHHHHHHHHhcCChhHHHHHhccCCCCChh--HHHHHHHHHhhcCC--hhHHHHHHHHhHhCCCCCcHHHHHHHHHHhcc
Q 036068            9 WTAIVSRYINRGQVDIARQCFDQMPERDYV--LWTAMIDGYLRVNR--FREALTLFQEMQTSNIMGDEFTIVSILTARAN   84 (178)
Q Consensus         9 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~--~~~~li~~~~~~~~--~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~   84 (178)
                      ...++.-|...++.++|...++++..|...  ....++......++  -+.+..++..+...|+.+.......+-..+..
T Consensus        13 ~~~il~Ey~~~~D~~Ea~~~l~el~~p~~~~~~V~~~i~~~le~~~~~re~~~~Ll~~L~~~~~is~~~~~~gf~~~l~~   92 (193)
T d1ug3a1          13 SKAIIEEYLHLNDMKEAVQCVQELASPSLLFIFVRHGVESTLERSAIAREHMGQLLHQLLCAGHLSTAQYYQGLYEILEL   92 (193)
T ss_dssp             HHHHHHHHHHHCCHHHHHHHHHTTCCGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHHcCCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHh
Confidence            467899999999999999999999877322  12223333333332  35567788888888876565544444444333


Q ss_pred             cc----chhhHHHHHHHHHHh----CcccchHHHHHHHHHHHhcCChhhhccchhhHHHHHHHHHhcCChhHHHHHHHHH
Q 036068           85 LR----ALDLGEWIKTYIDKN----KVKNDIFAGNALIDMYCICADVEKAQKDKFSWTTMIVGLAISGNGDKALDMFSQM  156 (178)
Q Consensus        85 ~~----~~~~a~~~~~~m~~~----~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~li~~~~~~~~~~~a~~~~~~m  156 (178)
                      ..    |...|..++..+...    |.-|-...++.+-......|..      ...+...+..+++....+.+.++|++.
T Consensus        93 l~Dl~iDiP~a~~~la~~~a~~i~~~~l~l~~l~~~~~~~l~~~g~~------~~l~~~~L~~l~~~~G~~~~~~l~~~s  166 (193)
T d1ug3a1          93 AEDMEIDIPHVWLYLAELVTPILQEGGVPMGELFREITKPLRPLGKA------ASLLLEILGLLCKSMGPKKVGTLWREA  166 (193)
T ss_dssp             HHHHTTTCTTHHHHHHHHHGGGGSTTSCCHHHHHHHHTTTHHHHTCH------HHHHHHHHHHHHHHHCHHHHHHHHHHT
T ss_pred             hhhhhhcchHHHHHHHHHHHHHHHcCCCCHHHHHHHhcccccccchH------HHHHHHHHHHHHHhcCHHHHHHHHHHC
Confidence            32    456677777666643    3333233333333333333332      334556666777777777788888665


Q ss_pred             H
Q 036068          157 L  157 (178)
Q Consensus       157 ~  157 (178)
                      .
T Consensus       167 ~  167 (193)
T d1ug3a1         167 G  167 (193)
T ss_dssp             T
T ss_pred             C
Confidence            3

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=90.16  E-value=0.24  Score=28.98  Aligned_cols=53  Identities=6%  Similarity=0.045  Sum_probs=39.4

Q ss_pred             CChhHHHHHHHHhHhCCCCCcH-HHHHHHHHHhccccchhhHHHHHHHHHHhCcc
Q 036068           51 NRFREALTLFQEMQTSNIMGDE-FTIVSILTARANLRALDLGEWIKTYIDKNKVK  104 (178)
Q Consensus        51 ~~~~~a~~~~~~m~~~~~~~~~-~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~  104 (178)
                      .+.++++.+|++..+.+ +.+. ..+--+--+|.+.|++++|.+.++.+.+..+.
T Consensus        52 ~d~~~gI~lLe~~~~~~-p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~  105 (124)
T d2pqrb1          52 NDERLGVKILTDIYKEA-ESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERN  105 (124)
T ss_dssp             HHHHHHHHHHHHHHHHC-GGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHHHHHhcC-chhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence            45678899998887754 2232 45556777888999999999999998887543

>d2nsza1 a.118.1.14 (A:322-450) Programmed cell death 4, PDCD4 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: MIF4G domain-like
domain: Programmed cell death 4, PDCD4
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=89.76  E-value=1.1  Score=26.18  Aligned_cols=79  Identities=11%  Similarity=0.053  Sum_probs=52.4

Q ss_pred             HHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHHhccccch--hhHHHHHHHHHHhCcccchHHHHHHHHH
Q 036068           39 LWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANLRAL--DLGEWIKTYIDKNKVKNDIFAGNALIDM  116 (178)
Q Consensus        39 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~--~~a~~~~~~m~~~~~~~~~~~~~~ll~~  116 (178)
                      -...++.-|...|+.++|...++++...... ....+..+..+.-+.+.-  +.+..++..+.+.|+-+....-..+...
T Consensus         9 k~~~ll~EY~~~~D~~Ea~~~l~eL~~p~~~-~e~V~~~i~~ale~~~~~r~~~~~~Ll~~L~~~~~is~~~i~~Gf~~~   87 (129)
T d2nsza1           9 EIDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQMKRGYERI   87 (129)
T ss_dssp             HHHHHHHHHHHHCCHHHHHHHHHHHTCGGGH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHcCCchhh-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
Confidence            3567899999999999999999998543222 345555566666555443  3457789999988865544444444433


Q ss_pred             HH
Q 036068          117 YC  118 (178)
Q Consensus       117 ~~  118 (178)
                      +.
T Consensus        88 l~   89 (129)
T d2nsza1          88 YN   89 (129)
T ss_dssp             HH
T ss_pred             Hh
Confidence            33

>d1mzba_ a.4.5.42 (A:) Ferric uptake regulation protein, FUR {Pseudomonas aeruginosa [TaxId: 287]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: FUR-like
domain: Ferric uptake regulation protein, FUR
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=89.40  E-value=0.97  Score=26.48  Aligned_cols=65  Identities=9%  Similarity=0.003  Sum_probs=53.3

Q ss_pred             HhHhCCCCCcHHHHHHHHHHhccc-cchhhHHHHHHHHHHhCcccchHHHHHHHHHHHhcCChhhhc
Q 036068           62 EMQTSNIMGDEFTIVSILTARANL-RALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ  127 (178)
Q Consensus        62 ~m~~~~~~~~~~~~~~ll~~~~~~-~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~  127 (178)
                      ++++.|++++. .=..++..+.+. +..-.|.++++.+.+.+...+..|.---+..+...|-.....
T Consensus         6 ~Lr~~GlR~T~-qR~~Il~~L~~~~~~h~sa~ei~~~l~~~~~~i~~aTVYR~L~~l~e~gli~~~~   71 (134)
T d1mzba_           6 ELRKAGLKVTL-PRVKILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAGLVVRHN   71 (134)
T ss_dssp             HHHHTTCCCCH-HHHHHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSEEEEC
T ss_pred             HHHHcCCCCCH-HHHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCccHHHHHHHHHHHHhccEEEEEe
Confidence            47889999886 446778888776 457889999999999999999898888888899988887655

>d1ug3a1 a.118.1.14 (A:1235-1427) Eukaryotic initiation factor eIF4G {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: MIF4G domain-like
domain: Eukaryotic initiation factor eIF4G
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.83  E-value=1.1  Score=28.09  Aligned_cols=91  Identities=15%  Similarity=0.116  Sum_probs=54.5

Q ss_pred             HHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHHhccc-cchhhHHHHHHHHHHhCcccchHHHHHHHHHH
Q 036068           39 LWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANL-RALDLGEWIKTYIDKNKVKNDIFAGNALIDMY  117 (178)
Q Consensus        39 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~-~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~  117 (178)
                      ....+|.-|...++.++|...++++...... .......+..++-+. .+-+.+..++..+.+.|+-+.......+-..+
T Consensus        12 k~~~il~Ey~~~~D~~Ea~~~l~el~~p~~~-~~~V~~~i~~~le~~~~~re~~~~Ll~~L~~~~~is~~~~~~gf~~~l   90 (193)
T d1ug3a1          12 KSKAIIEEYLHLNDMKEAVQCVQELASPSLL-FIFVRHGVESTLERSAIAREHMGQLLHQLLCAGHLSTAQYYQGLYEIL   90 (193)
T ss_dssp             HHHHHHHHHHHHCCHHHHHHHHHTTCCGGGH-HHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHcCCchhH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
Confidence            4567889999999999999999998543322 223333344444322 22355677888888888765555555555544


Q ss_pred             HhcCChhhhccch
Q 036068          118 CICADVEKAQKDK  130 (178)
Q Consensus       118 ~~~~~~~~a~~~~  130 (178)
                      ....+..--.|..
T Consensus        91 ~~l~Dl~iDiP~a  103 (193)
T d1ug3a1          91 ELAEDMEIDIPHV  103 (193)
T ss_dssp             HHHHHHTTTCTTH
T ss_pred             HhhhhhhhcchHH
Confidence            4444433333433

>d1peqa1 a.98.1.1 (A:13-174) R1 subunit of ribonucleotide reductase, N-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: All alpha proteins
fold: R1 subunit of ribonucleotide reductase, N-terminal domain
superfamily: R1 subunit of ribonucleotide reductase, N-terminal domain
family: R1 subunit of ribonucleotide reductase, N-terminal domain
domain: R1 subunit of ribonucleotide reductase, N-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=87.28  E-value=0.37  Score=29.63  Aligned_cols=133  Identities=12%  Similarity=0.112  Sum_probs=69.5

Q ss_pred             hhHHHHHHHHHhhcCCh--hHHHHHHHHhHhCCCCCcHHHHHHH---HHHhccccchhhH----------HHHHHHHHHh
Q 036068           37 YVLWTAMIDGYLRVNRF--REALTLFQEMQTSNIMGDEFTIVSI---LTARANLRALDLG----------EWIKTYIDKN  101 (178)
Q Consensus        37 ~~~~~~li~~~~~~~~~--~~a~~~~~~m~~~~~~~~~~~~~~l---l~~~~~~~~~~~a----------~~~~~~m~~~  101 (178)
                      -...|..+..+-+.|.+  +.-....+......+.|+...|..+   +.-+...|-++..          .++.+.+...
T Consensus         4 y~~Lna~l~l~~~~g~i~~~kD~~A~~~y~~e~v~~~~~~F~sl~eri~~LV~~g~Yd~~il~~Ys~eeie~L~~~I~~~   83 (162)
T d1peqa1           4 YHALNAMLNLYDKAGHIQFDKDQQAIDAFFATHVRPHSVTFASQHERLGTLVREGYYDDAVLARYDRAFVLRLFEHAHAS   83 (162)
T ss_dssp             HHHHHHGGGCCCTTSCCCTHHHHHHHHHHHHHTHHHHBCCCSCHHHHHHHHHHTTSBCHHHHTTSCHHHHHHHHHHHHHS
T ss_pred             HHHHHhHhccccccCccchHHHHHHHHHHHHHHHhhcccccccHHHHHHHHhhcCcccHHHHHHccHHHHHHHHHHhhhc
Confidence            34455555555455542  2222233333334445555444444   6666777776542          2222222222


Q ss_pred             Cc-ccchHHHHHHHHHHHhcCCh-hhhccchhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhHHH
Q 036068          102 KV-KNDIFAGNALIDMYCICADV-EKAQKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYV  169 (178)
Q Consensus       102 ~~-~~~~~~~~~ll~~~~~~~~~-~~a~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~  169 (178)
                      +. ..+-.....+...|.-..+- ..-.-++.-.-..+..+...|+.+.|.++++.|.+..+.|...|+-
T Consensus        84 rd~~~ty~G~~~l~~~YllK~~d~~~~~E~pq~~~m~vAl~l~~~~~~~a~~~y~~~~~~~~~~aTPT~~  153 (162)
T d1peqa1          84 GFRFQTFLGAWKFYTSYTLKTFDGKRYLEHFEDRVTMVALTLAQGDETLATQLTDEMLSGRFQPATPTFL  153 (162)
T ss_dssp             CCCCSSHHHHHHHHHHTSCBCTTSSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSEEECHHHHH
T ss_pred             cccccchHHHHHHHHHHhhccCCCCchhhCHHHHHHHHHHHHccCcHHHHHHHHHHHHhCCeeCCCcHhh
Confidence            21 22333344444455543221 1112234444445555666899999999999999988888877764