Citrus Sinensis ID: 036107

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-
Protein Sequence
MPPKHDIWKLLSQSHLQKHHKINPLGCLLCNRHCITNELTGLPSWLKFFDTQSPDEDFVIPSLASWVESLKLNEQSRISSHALSEDHETDVDKVSEILRKRYPSPDKVVEALKCFCFTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEKKSLGNAKERIDELLTHATEQRTF
Secondary Structure (PSIPRED)
cccccHHHHHHHHHHHccccccccHHHHHHHHHHHccccccHHHHHHHHcccccccccHHHHHHHHHHcccccHHHHHHHHHHHccccccHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHccccHHHHHHHHHHHHHccccccHHHHHHHccccccHHHHHHHHHHHHccccHHHHHHHHHHHHccccccHHHHHHHHHHHHccccHHHHHHHHHHHHHccccccHHHHHHHHHHHHccccHHHHHHHHHHHHHcccccccHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccHHHHHHHHHHHHccccEEEHHHHHHHHHHcccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHccHHHHHHHHHHHHHcccccccc
Secondary Structure Prediction (SSPRO)
cccHHHHHHHHHHHcccccccccHHHHHHHHHHHccccHHHHHHHHHHHHHcccccHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccEEEHHHHHHHHHHccccHHHHHHHHHHHHHHHHccccccEEEHHHHHHHHHHcccHHHHHHHHHHHHHccHHHHHHHHHHHccccccEEEHHHHHHHHHHcccHHHHHHHHHHHHccccccEEEHHHHHHHHHHcccHHHHHHHHHHHHHccccccEEEHHHHHHHHHHcccHHHHHHHHHHHHHccccccEEEHHHHHHHHHHcccHHHHHHHHHHHHHccccccEEEHHHHHHHHHccccEEEHHHHHHHHHHcccHHHHHHHHHHHHHccccccEEEHHHHHHHHHHcccHHHHHHHHHHHHHHHHccccccEHHHHHHHHHHHHccHHHHHHHHHHHHHcccccccc
Coil and Loop (DISEMBL)
MPPKHDIWKLLSQShlqkhhkinplgcllcnrhcitneltglpswlkffdtqspdedfviPSLASWVESLKLNEQSrisshalsedhetdvDKVSEILrkrypspdkVVEALKCFCFTwaktqtgymhtpETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFqhgfspdgvsyTCFIEHYCREKDFRKVDYTLKEmqekgckpsviTCTIVMHALEKAKQIYEALKVYEKmksddcltdtsfYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKieedsckpdcetHARSlkmcchkkrmKDGMLVLNLMREMLskgivpqesTHKMLAEELEKKSLGNAKERIDELLTHATEQRTF
Flexible Loop (DISEMBL)
MPPKHDIWKLLSQSHLQKHHKINPLGCLLCNRHCITNELTGLPSWLKFFDTQSPDEDFVIPSLASWVESLKLNEQSRIsshalsedhetdvdKVSEILRkrypspdkvVEALKCFCFTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEmqekgckpsvITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLrqkieedsckpdcetharslkmcchkkrMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEkkslgnakERIDELlthateqrtf
Low Complexity Region (SEG)
MPPKHDIWKLLSQSHLQKHHKINPLGCLLCNRHCITNELTGLPSWLKFFDTQSPDEDFVIPSLASWVESLKLNEQSRISSHALSEDHETDVDKVSEILRKRYPSPDKVVEALKCFCFTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEKKSLGNAKERIDELLTHATEQRTF
Disordered region (IsUnstruct)
******IWKLLSQSHLQKHHKINPLGCLLCNRHCITNELTGLPSWLKFFDTQSPDEDFVIPSLASWVESL*******************************Y**PDKVVEALKCFCFTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRS***********************HARSLKMCCHKKRMKDGMLVLNLMREMLS******************************************
Disordered Region (DISOPRED)
*PPKHDIWKLLSQSHLQKHHKINPLGCLLCNRHCITNELTGLPSWLKFFDTQSPDEDFVIPSLASWVESLKLNEQSRISSHALSEDHETDVDKVSEILRKRYPSPDKVVEALKCFCFTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEKKSLGNAKERIDELLTHATEQRTF
Disordered Region (DISEMBL)
MPPKHDIWKLLSQSHLQKHHKINPLGCLLCNRHCITNELTGLPSWLKFFDTQSPDEDFVIPSLASWVESLKLN******************DKVSEILRKRYPSPDKVVEALKCFCFTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEKKSLGNAKERIDELLTHATEQRTF
Disordered Region (DISPRO)
MPPKHDIWKLLSQSHLQKHHKINPLGCLLCNRHCITNELTGLPSWLKFFDTQSPDEDFVIPSLASWVESLKLNEQSRISSHALSEDHETDVDKVSEILRKRYPSPDKVVEALKCFCFTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEKKSLGNAKERIDELLTHATEQRTF
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MPPKHDIWKLLSQSHLQKHHKINPLGCLLCNRHCITNELTGLPSWLKFFDTQSPDEDFVIPSLASWVESLKLNEQSRISSHALSEDHETDVDKVSEILRKRYPSPDKVVEALKCFCFTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEKKSLGNAKERIDELLTHATEQRTF
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	441	2.2.26 [Sep-21-2011]
Q9LUJ4	562	Pentatricopeptide repeat-	yes	no	0.902	0.708	0.391	4e-86
Q9M8W9	508	Pentatricopeptide repeat-	no	no	0.707	0.614	0.296	3e-40
Q9LN22	537	Pentatricopeptide repeat-	no	no	0.659	0.541	0.254	7e-25
Q9FH87	637	Putative pentatricopeptid	no	no	0.716	0.496	0.232	1e-23
Q9C9A2	510	Pentatricopeptide repeat-	no	no	0.696	0.601	0.255	5e-23
Q9FVX2	517	Pentatricopeptide repeat-	no	no	0.668	0.570	0.231	2e-22
Q9SSR6	523	Pentatricopeptide repeat-	no	no	0.770	0.650	0.238	8e-22
P0C8A0	638	Pentatricopeptide repeat-	no	no	0.655	0.452	0.235	2e-21
Q0WP85	509	Pentatricopeptide repeat-	no	no	0.578	0.500	0.223	2e-19
Q9ASZ8	621	Pentatricopeptide repeat-	no	no	0.641	0.455	0.231	8e-19

>sp|Q9LUJ4|PP248_ARATH Pentatricopeptide repeat-containing protein At3g22670, mitochondrial OS=Arabidopsis thaliana GN=At3g22670 PE=2 SV=1

 Score =  318 bits (816), Expect = 4e-86,   Method: Compositional matrix adjust.
 Identities = 203/519 (39%), Positives = 275/519 (52%), Gaps = 121/519 (23%)

Query: 35  ITNELTGLPSWLKFFDTQSP----------DEDFVIPSLASWVESLKLNEQSRISSHALS 84
           +  E   LPSW+K F +  P          DEDFVIPSLA+WVES K + Q ++S   + 
Sbjct: 37  VAAESPELPSWIKDFLSNKPSSSSSSVSKDDEDFVIPSLANWVESQKFSRQ-QVSEGNVV 95

Query: 85  EDHETDVDKVSEILRKRYPSPDKVVEAL-KCFC------------------------FTW 119
           +    D+DKV + L K+  S + VV+ L KC                          F W
Sbjct: 96  KKPVEDIDKVCDFLNKKDTSHEDVVKELSKCDVVVTESLVLQVLRRFSNGWNQAYGFFIW 155

Query: 120 AKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNG-YVSLAAMSTVMRRL-- 176
           A +QTGY+H+  TYNAMV+ LGK + F LMWELV E+++      V+L  MS VMRRL  
Sbjct: 156 ANSQTGYVHSGHTYNAMVDVLGKCRNFDLMWELVNEMNKNEESKLVTLDTMSKVMRRLAK 215

Query: 177 ----------------------DTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQI 214
                                 DT AM+ LMD LVK NS+ HA++VFLK  D I   ++ 
Sbjct: 216 SGKYNKAVDAFLEMEKSYGVKTDTIAMNSLMDALVKENSIEHAHEVFLKLFDTIKPDART 275

Query: 215 FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQ 274
           F++LIHG+CK RK D A+  M  M    F+PD V+YT F+E YC+E DFR+V+  L+EM+
Sbjct: 276 FNILIHGFCKARKFDDARAMMDLMKVTEFTPDVVTYTSFVEAYCKEGDFRRVNEMLEEMR 335

Query: 275 EKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRF- 333
           E GC P+V+T TIVMH+L K+KQ+ EAL VYEKMK D C+ D  FYSSLI ILSK  RF 
Sbjct: 336 ENGCNPNVVTYTIVMHSLGKSKQVAEALGVYEKMKEDGCVPDAKFYSSLIHILSKTGRFK 395

Query: 334 ------------------LIYNTMISSACVRSEEGNALKLRQKIEE---DSCKPDCETHA 372
                             L+YNTMIS+A   S +  AL+L +++E+   +SC P+ ET+A
Sbjct: 396 DAAEIFEDMTNQGVRRDVLVYNTMISAALHHSRDEMALRLLKRMEDEEGESCSPNVETYA 455

Query: 373 RSL-----------------------------------KMCCHKKRMKDGMLVLNLMREM 397
             L                                   +  C   ++++  L      E 
Sbjct: 456 PLLKMCCHKKKMKLLGILLHHMVKNDVSIDVSTYILLIRGLCMSGKVEEACL---FFEEA 512

Query: 398 LSKGIVPQESTHKMLAEELEKKSLGNAKERIDELLTHAT 436
           + KG+VP++ST KML +ELEKK++  AK +I  L+   T
Sbjct: 513 VRKGMVPRDSTCKMLVDELEKKNMAEAKLKIQSLVQSKT 551

Arabidopsis thaliana (taxid: 3702)

>sp|Q9M8W9|PP211_ARATH Pentatricopeptide repeat-containing protein At3g04130, mitochondrial OS=Arabidopsis thaliana GN=At3g04130 PE=2 SV=2

 Score =  166 bits (420), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 116/391 (29%), Positives = 188/391 (48%), Gaps = 79/391 (20%)

Query: 119 WAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRL-- 176
           WA++  G+ H+ + Y+  V+ LGK+KK+  M E V+ +    +  V+L  ++ +MRR   
Sbjct: 110 WAESCKGHKHSSDAYDMAVDILGKAKKWDRMKEFVERMR--GDKLVTLNTVAKIMRRFAG 167

Query: 177 ---------------------DTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIF 215
                                +T +M++L+DTL K   V  A  V L+ K  I+ ++  F
Sbjct: 168 AGEWEEAVGIFDRLGEFGLEKNTESMNLLLDTLCKEKRVEQARVVLLQLKSHITPNAHTF 227

Query: 216 DVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQE 275
           ++ IHGWCK  + + A   ++EM  HGF P  +SYT  I  YC++ +F KV   L EM+ 
Sbjct: 228 NIFIHGWCKANRVEEALWTIQEMKGHGFRPCVISYTTIIRCYCQQFEFIKVYEMLSEMEA 287

Query: 276 KGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRF-- 333
            G  P+ IT T +M +L   K+  EAL+V  +MK   C  D+ FY+ LI  L++A R   
Sbjct: 288 NGSPPNSITYTTIMSSLNAQKEFEEALRVATRMKRSGCKPDSLFYNCLIHTLARAGRLEE 347

Query: 334 ------------------LIYNTMISSACVRSEEGNALKLRQKIEEDS-CKPDCETHARS 374
                               YN+MI+  C   EE  A++L +++E  + C PD  T+   
Sbjct: 348 AERVFRVEMPELGVSINTSTYNSMIAMYCHHDEEDKAIELLKEMESSNLCNPDVHTYQPL 407

Query: 375 LKMCCHK-------KRMKD--------------GMLVLNLMR------------EMLSKG 401
           L+ C  +       K +K+                L+  L R            EM+S+ 
Sbjct: 408 LRSCFKRGDVVEVGKLLKEMVTKHHLSLDESTYTFLIQRLCRANMCEWAYCLFEEMISQD 467

Query: 402 IVPQESTHKMLAEELEKKSLGNAKERIDELL 432
           I P+  T  +L EE++KK++  + ERI+ ++
Sbjct: 468 ITPRHRTCLLLLEEVKKKNMHESAERIEHIM 498

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LN22|PPR54_ARATH Pentatricopeptide repeat-containing protein At1g20300, mitochondrial OS=Arabidopsis thaliana GN=At1g20300 PE=2 SV=1

 Score =  115 bits (288), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 87/342 (25%), Positives = 148/342 (43%), Gaps = 51/342 (14%)

Query: 117 FTWAKTQTGYMH-TPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRR 175
           F WA ++  Y H +P  YN M++  GK ++F L W L+ ++ +  N  +S+   + ++RR
Sbjct: 137 FNWATSRDDYDHKSPHPYNEMIDLSGKVRQFDLAWHLI-DLMKSRNVEISIETFTILIRR 195

Query: 176 L-----------------------DTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSS 212
                                   D  A S+++  L ++   + A   F   KD      
Sbjct: 196 YVRAGLASEAVHCFNRMEDYGCVPDKIAFSIVISNLSRKRRASEAQSFFDSLKDRFEPDV 255

Query: 213 QIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKE 272
            ++  L+ GWC+  +   A+K  KEM   G  P+  +Y+  I+  CR     +      +
Sbjct: 256 IVYTNLVRGWCRAGEISEAEKVFKEMKLAGIEPNVYTYSIVIDALCRCGQISRAHDVFAD 315

Query: 273 MQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFI------ 326
           M + GC P+ IT   +M    KA +  + L+VY +MK   C  DT  Y+ LI        
Sbjct: 316 MLDSGCAPNAITFNNLMRVHVKAGRTEKVLQVYNQMKKLGCEPDTITYNFLIEAHCRDEN 375

Query: 327 LSKAVRFLIYNTMISSAC---------------VRSEEGNALKLRQKIEEDSCKPDCETH 371
           L  AV+ L  NTMI   C                + +   A ++  K+ E  C+P+  T+
Sbjct: 376 LENAVKVL--NTMIKKKCEVNASTFNTIFRYIEKKRDVNGAHRMYSKMMEAKCEPNTVTY 433

Query: 372 ARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLA 413
              ++M    K      +VL + +EM  K + P  +T+++L 
Sbjct: 434 NILMRMFVGSKSTD---MVLKMKKEMDDKEVEPNVNTYRLLV 472

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FH87|PP447_ARATH Putative pentatricopeptide repeat-containing protein At5g65820 OS=Arabidopsis thaliana GN=At5g65820 PE=3 SV=1

 Score =  111 bits (278), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 84/362 (23%), Positives = 157/362 (43%), Gaps = 46/362 (12%)

Query: 117 FTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRL 176
           F WA  Q  Y H+ E Y +MV+ L K ++FG +W L++E+ + +   +       +++R 
Sbjct: 134 FVWAAKQPRYCHSIEVYKSMVKILSKMRQFGAVWGLIEEMRKENPQLIEPELFVVLVQRF 193

Query: 177 -----------------------DTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQ 213
                                  D      L+D L K  SV  A K+F   +    ++ +
Sbjct: 194 ASADMVKKAIEVLDEMPKFGFEPDEYVFGCLLDALCKHGSVKDAAKLFEDMRMRFPVNLR 253

Query: 214 IFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEM 273
            F  L++GWC+  K   A+  + +M + GF PD V YT  +  Y            L++M
Sbjct: 254 YFTSLLYGWCRVGKMMEAKYVLVQMNEAGFEPDIVDYTNLLSGYANAGKMADAYDLLRDM 313

Query: 274 QEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVR- 332
           + +G +P+    T+++ AL K  ++ EA+KV+ +M+  +C  D   Y++L+    K  + 
Sbjct: 314 RRRGFEPNANCYTVLIQALCKVDRMEEAMKVFVEMERYECEADVVTYTALVSGFCKWGKI 373

Query: 333 ---FLIYNTMISSACVRSEEG---------------NALKLRQKIEEDSCKPDCETHARS 374
              +++ + MI    + SE                   L+L +K+ +    PD   +   
Sbjct: 374 DKCYIVLDDMIKKGLMPSELTYMHIMVAHEKKESFEECLELMEKMRQIEYHPDIGIYNVV 433

Query: 375 LKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEKKS-LGNAKERIDELLT 433
           +++ C    +K+ + + N   EM   G+ P   T  ++   L  +  L  A +   E++T
Sbjct: 434 IRLACKLGEVKEAVRLWN---EMEENGLSPGVDTFVIMINGLASQGCLLEASDHFKEMVT 490

Query: 434 HA 435
             
Sbjct: 491 RG 492

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C9A2|PP112_ARATH Pentatricopeptide repeat-containing protein At1g71060, mitochondrial OS=Arabidopsis thaliana GN=At1g71060 PE=2 SV=1

 Score =  109 bits (272), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 100/392 (25%), Positives = 172/392 (43%), Gaps = 85/392 (21%)

Query: 65  SWVESLKLNEQSRISSHALSEDHETDVDKVSEILRKRYPSPDKVVEALKCFCFTWAKTQT 124
           S VE+L LNE S   S AL          + E+L+K   +       L    F WA+ Q 
Sbjct: 79  SKVETL-LNEASVKLSPAL----------IEEVLKKLSNAG-----VLALSVFKWAENQK 122

Query: 125 GYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVL 184
           G+ HT   YNA++E+LGK K+F L+W LV ++   +   +S    + + RR         
Sbjct: 123 GFKHTTSNYNALIESLGKIKQFKLIWSLVDDMK--AKKLLSKETFALISRRY-------- 172

Query: 185 MDTLVKRNSVAHAYKVFLKFKD-CISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGF 243
                +   V  A   F K ++    + S  F+ ++    K+R    AQK   +M +  F
Sbjct: 173 ----ARARKVKEAIGAFHKMEEFGFKMESSDFNRMLDTLSKSRNVGDAQKVFDKMKKKRF 228

Query: 244 SPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALK 303
            PD  SYT  +E + +E +  +VD   +EM+++G +P V+   I+++A  KAK+  EA++
Sbjct: 229 EPDIKSYTILLEGWGQELNLLRVDEVNREMKDEGFEPDVVAYGIIINAHCKAKKYEEAIR 288

Query: 304 VYEKMKSDDCLTDTSFYSSLI---------------FILSKAVRFLI----YNTMISSAC 344
            + +M+  +C      + SLI               F  SK+  F +    YN ++ + C
Sbjct: 289 FFNEMEQRNCKPSPHIFCSLINGLGSEKKLNDALEFFERSKSSGFPLEAPTYNALVGAYC 348

Query: 345 VRSEEGNALK------------------------LRQKIEED--------SCKPDCETHA 372
                 +A K                        +R +  ++        SC+P   T+ 
Sbjct: 349 WSQRMEDAYKTVDEMRLKGVGPNARTYDIILHHLIRMQRSKEAYEVYQTMSCEPTVSTYE 408

Query: 373 RSLKMCCHKKRMKDGMLVLNLMREMLSKGIVP 404
             ++M C+K+R+    + + +  EM  KG++P
Sbjct: 409 IMVRMFCNKERLD---MAIKIWDEMKGKGVLP 437

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FVX2|PP129_ARATH Pentatricopeptide repeat-containing protein At1g77360, mitochondrial OS=Arabidopsis thaliana GN=At1g77360 PE=2 SV=2

 Score =  107 bits (266), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 79/341 (23%), Positives = 145/341 (42%), Gaps = 46/341 (13%)

Query: 117 FTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRL 176
           F W++ Q  Y H+   Y+ M+E+  K +++ LMW+L+  + +     +++     VMR+ 
Sbjct: 121 FQWSEKQRHYEHSVRAYHMMIESTAKIRQYKLMWDLINAMRK--KKMLNVETFCIVMRKY 178

Query: 177 -----------------------DTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQ 213
                                  +  A + L+  L K  +V  A +VF   +D  +  S+
Sbjct: 179 ARAQKVDEAIYAFNVMEKYDLPPNLVAFNGLLSALCKSKNVRKAQEVFENMRDRFTPDSK 238

Query: 214 IFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEM 273
            + +L+ GW K      A++  +EM   G  PD V+Y+  ++  C+     +    ++ M
Sbjct: 239 TYSILLEGWGKEPNLPKAREVFREMIDAGCHPDIVTYSIMVDILCKAGRVDEALGIVRSM 298

Query: 274 QEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVR- 332
               CKP+    ++++H      ++ EA+  + +M+      D + ++SLI    KA R 
Sbjct: 299 DPSICKPTTFIYSVLVHTYGTENRLEEAVDTFLEMERSGMKADVAVFNSLIGAFCKANRM 358

Query: 333 ---FLIYNTMISSACVRSEEGNALKLRQKIEEDS--------------CKPDCETHARSL 375
              + +   M S     + +   + LR  IE                 C+PD +T+   +
Sbjct: 359 KNVYRVLKEMKSKGVTPNSKSCNIILRHLIERGEKDEAFDVFRKMIKVCEPDADTYTMVI 418

Query: 376 KMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEEL 416
           KM C KK M+    V   MR+   KG+ P   T  +L   L
Sbjct: 419 KMFCEKKEMETADKVWKYMRK---KGVFPSMHTFSVLINGL 456

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SSR6|PPR78_ARATH Pentatricopeptide repeat-containing protein At1g52640, mitochondrial OS=Arabidopsis thaliana GN=At1g52640 PE=2 SV=1

 Score =  105 bits (261), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 96/402 (23%), Positives = 164/402 (40%), Gaps = 62/402 (15%)

Query: 72  LNEQSRISSHALSEDHETDVDKVSEILRKRYPS-PDKVVEALKCFC----------FTWA 120
           +NE SR+ S     DH    D +   L    P     +VE +   C          F WA
Sbjct: 38  VNEISRVLS-----DHRNPKDDLEHTLVAYSPRVSSNLVEQVLKRCKNLGFPAHRFFLWA 92

Query: 121 KTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMR-----R 175
           +    + H+ E+Y+ +VE LG SK+F L+W+ + E  E +   +S      V R      
Sbjct: 93  RRIPDFAHSLESYHILVEILGSSKQFALLWDFLIEAREYNYFEISSKVFWIVFRAYSRAN 152

Query: 176 LDTRA------------------MSVLMDTLVKRNSVAHAYKVFLKFKD-CISLSSQIFD 216
           L + A                  +  L+ +L  +  V HA + F K K   I  S++ + 
Sbjct: 153 LPSEACRAFNRMVEFGIKPCVDDLDQLLHSLCDKKHVNHAQEFFGKAKGFGIVPSAKTYS 212

Query: 217 VLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEK 276
           +L+ GW + R +  A+K   EM +     D ++Y   ++  C+  D        +EM   
Sbjct: 213 ILVRGWARIRDASGARKVFDEMLERNCVVDLLAYNALLDALCKSGDVDGGYKMFQEMGNL 272

Query: 277 GCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVR---- 332
           G KP   +  I +HA   A  ++ A KV ++MK  D + +   ++ +I  L K  +    
Sbjct: 273 GLKPDAYSFAIFIHAYCDAGDVHSAYKVLDRMKRYDLVPNVYTFNHIIKTLCKNEKVDDA 332

Query: 333 FLI---------------YNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKM 377
           +L+               YN++++  C   E   A KL  +++   C PD  T+   LK+
Sbjct: 333 YLLLDEMIQKGANPDTWTYNSIMAYHCDHCEVNRATKLLSRMDRTKCLPDRHTYNMVLKL 392

Query: 378 CCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEKK 419
                R      +   M E   +   P  +T+ ++   L +K
Sbjct: 393 LIRIGRFDRATEIWEGMSE---RKFYPTVATYTVMIHGLVRK 431

Arabidopsis thaliana (taxid: 3702)

>sp|P0C8A0|PP275_ARATH Pentatricopeptide repeat-containing protein At3g49730 OS=Arabidopsis thaliana GN=At3g49730 PE=2 SV=1

 Score =  103 bits (258), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 79/335 (23%), Positives = 146/335 (43%), Gaps = 46/335 (13%)

Query: 117 FTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRL 176
           F WA  Q GY H+ E   +MV  L K ++FG +W L++E+ + +   +       +MRR 
Sbjct: 118 FLWATKQPGYFHSYEVCKSMVMILSKMRQFGAVWGLIEEMRKTNPELIEPELFVVLMRRF 177

Query: 177 -----------------------DTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQ 213
                                  D      L+D L K  SV  A KVF   ++    + +
Sbjct: 178 ASANMVKKAVEVLDEMPKYGLEPDEYVFGCLLDALCKNGSVKEASKVFEDMREKFPPNLR 237

Query: 214 IFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEM 273
            F  L++GWC+  K   A++ + +M + G  PD V +T  +  Y            + +M
Sbjct: 238 YFTSLLYGWCREGKLMEAKEVLVQMKEAGLEPDIVVFTNLLSGYAHAGKMADAYDLMNDM 297

Query: 274 QEKGCKPSVITCTIVMHAL-EKAKQIYEALKVYEKMKSDDCLTDTSFYSSLI------FI 326
           +++G +P+V   T+++ AL    K++ EA++V+ +M+   C  D   Y++LI       +
Sbjct: 298 RKRGFEPNVNCYTVLIQALCRTEKRMDEAMRVFVEMERYGCEADIVTYTALISGFCKWGM 357

Query: 327 LSKAVRFL-------------IYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHAR 373
           + K    L              Y  ++ +   + +    L+L +K++   C PD   +  
Sbjct: 358 IDKGYSVLDDMRKKGVMPSQVTYMQIMVAHEKKEQFEECLELIEKMKRRGCHPDLLIYNV 417

Query: 374 SLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQEST 408
            +++ C    +K+ + + N   EM + G+ P   T
Sbjct: 418 VIRLACKLGEVKEAVRLWN---EMEANGLSPGVDT 449

Arabidopsis thaliana (taxid: 3702)

>sp|Q0WP85|PP150_ARATH Pentatricopeptide repeat-containing protein At2g13420, mitochondrial OS=Arabidopsis thaliana GN=At2g13420 PE=2 SV=1

 Score = 97.8 bits (242), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 68/304 (22%), Positives = 125/304 (41%), Gaps = 49/304 (16%)

Query: 117 FTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVM--- 173
           F + ++      TP ++N +++ LG+ ++F ++ +L+ E+D+ S     +     +    
Sbjct: 92  FQYLRSLPSPSTTPTSFNLIIDILGRVRQFDVVRQLIVEMDQTSPETFLILVKRLIAAGL 151

Query: 174 -----------------RRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFD 216
                            RR        L+DTL K      A  VF + K+      +++ 
Sbjct: 152 TRQAVRAFDDAPCFLENRRFRLVEFGFLLDTLCKYGYTKMAVGVFNERKEEFGSDEKVYT 211

Query: 217 VLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCR----------EKDFRKV 266
           +LI GWCK R+ D A+K + EM + G  P+ V+Y   +   CR          E++ R  
Sbjct: 212 ILIAGWCKLRRIDMAEKFLVEMIESGIEPNVVTYNVLLNGICRTASLHPEERFERNVRNA 271

Query: 267 DYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFI 326
           +    EM+++G +P V + +IV+H   +A +    L   + MK+         Y+S++  
Sbjct: 272 EKVFDEMRQRGIEPDVTSFSIVLHMYSRAHKAELTLDKMKLMKAKGISPTIETYTSVVKC 331

Query: 327 LSKAVRFL-------------------IYNTMISSACVRSEEGNALKLRQKIEEDSCKPD 367
           L    R                      YN        R +   A+ L +K++   CKP 
Sbjct: 332 LCSCGRLEEAEELLETMVESGISPSSATYNCFFKEYKGRKDANGAMNLYRKMKNGLCKPS 391

Query: 368 CETH 371
            +T+
Sbjct: 392 TQTY 395

Arabidopsis thaliana (taxid: 3702)

>sp|Q9ASZ8|PPR37_ARATH Pentatricopeptide repeat-containing protein At1g12620 OS=Arabidopsis thaliana GN=At1g12620 PE=2 SV=1

 Score = 95.5 bits (236), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 82/354 (23%), Positives = 148/354 (41%), Gaps = 71/354 (20%)

Query: 122 TQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAM 181
            +TG+     TY  +++ + KS +  L  EL+++++E                +LD    
Sbjct: 204 VETGFQPNEVTYGPVLKVMCKSGQTALAMELLRKMEERK-------------IKLDAVKY 250

Query: 182 SVLMDTLVKRNSVAHAYKVFLKFK-DCISLSSQIFDVLIHGWCKTRKSDYAQKAM----- 235
           S+++D L K  S+ +A+ +F + +         I+  LI G+C   + D   K +     
Sbjct: 251 SIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIIIYTTLIRGFCYAGRWDDGAKLLRDMIK 310

Query: 236 ------------------------------KEMFQHGFSPDGVSYTCFIEHYCREKDFRK 265
                                         KEM Q G SPD V+YT  I+ +C+E    K
Sbjct: 311 RKITPDVVAFSALIDCFVKEGKLREAEELHKEMIQRGISPDTVTYTSLIDGFCKENQLDK 370

Query: 266 VDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIF 325
            ++ L  M  KGC P++ T  I+++   KA  I + L+++ KM     + DT  Y++LI 
Sbjct: 371 ANHMLDLMVSKGCGPNIRTFNILINGYCKANLIDDGLELFRKMSLRGVVADTVTYNTLIQ 430

Query: 326 -----------------ILSKAVR--FLIYNTMISSACVRSEEGNALKLRQKIEEDSCKP 366
                            ++S+ VR   + Y  ++   C   E   AL++ +KIE+   + 
Sbjct: 431 GFCELGKLEVAKELFQEMVSRRVRPDIVSYKILLDGLCDNGEPEKALEIFEKIEKSKMEL 490

Query: 367 DCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEKKS 420
           D   +   +   C+  ++ D     +L   +  KG+ P   T+ ++   L KK 
Sbjct: 491 DIGIYNIIIHGMCNASKVDDAW---DLFCSLPLKGVKPDVKTYNIMIGGLCKKG 541

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	441
255552099	549	pentatricopeptide repeat-containing prot	0.990	0.795	0.442	1e-110
225432738	535	PREDICTED: pentatricopeptide repeat-cont	0.943	0.777	0.461	1e-110
224107985	497	predicted protein [Populus trichocarpa]	0.893	0.792	0.439	1e-101
449442128	591	PREDICTED: pentatricopeptide repeat-cont	0.916	0.683	0.450	1e-101
449505568	614	PREDICTED: pentatricopeptide repeat-cont	0.916	0.657	0.450	1e-101
356495784	558	PREDICTED: pentatricopeptide repeat-cont	0.956	0.756	0.402	8e-91
356540343	543	PREDICTED: pentatricopeptide repeat-cont	0.918	0.745	0.384	2e-89
15228825	562	pentatricopeptide repeat-containing prot	0.902	0.708	0.391	3e-84
224107983	481	predicted protein [Populus trichocarpa]	0.861	0.790	0.374	3e-82
357480939	596	Pentatricopeptide repeat-containing prot	0.941	0.696	0.379	2e-81

>gi|255552099|ref|XP_002517094.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] gi|223543729|gb|EEF45257.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis]

 Score =  404 bits (1037), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 242/547 (44%), Positives = 304/547 (55%), Gaps = 110/547 (20%)

Query: 1   MPPKHDIWKLLSQSHLQKHHKINP-----LGCLLCNRHCI----TNELTGLPSWLKFFD- 50
           MP KH I KL       K  K NP     L   L   H      + E   LP+WL     
Sbjct: 1   MPQKHQIHKLYQIFSSPKTLKSNPSLSKSLPIPLTTPHSADSPDSPESPDLPTWLHSNKK 60

Query: 51  TQSPDEDFVIPSLASWVESLKLNEQSRISSHALSEDHETDVDKVSEILRKRYPSPDKVVE 110
            + PD DFVIPSLA WVE   L +   + +H L     +D+D+VSEIL+K YP  D VV+
Sbjct: 61  PEFPDGDFVIPSLADWVEHHNLGDIKEVGNHLLFHAQVSDIDRVSEILKKHYPCTDSVVQ 120

Query: 111 ALK-C---------------FC---------FTWAKTQTGYMHTPETYNAMVEALGKSKK 145
           AL  C               FC         FTWAK QTGY+H P+ Y+ MV+ LG+ KK
Sbjct: 121 ALNDCGVNPTNNLISQLLNRFCNDWVPALGLFTWAKHQTGYVHPPDLYDLMVDILGRRKK 180

Query: 146 FGLMWELVKEIDELSNGYVSLAAMSTVMRRL-----------------------DTRAMS 182
           F  MWELVKE++ L  GYVSL  M  VMRRL                       D  A++
Sbjct: 181 FSFMWELVKEMENLE-GYVSLVTMKKVMRRLARAGNFQDAVEAFRGIEKLGVRKDIEALN 239

Query: 183 VLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHG 242
           VLMD LVK  SV HAY  F++FKD I +  Q F++L+HG+CK RK D A+K M EM + G
Sbjct: 240 VLMDALVKEGSVEHAYSAFMEFKDSIHVDFQSFNILLHGYCKARKLDDARKIMDEMDKQG 299

Query: 243 FSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEAL 302
           F P+ VSYTCFIE YC+ KDFR V+    EMQEK CKP+VIT TI MHAL KAKQ+ +AL
Sbjct: 300 FQPNVVSYTCFIELYCKLKDFRNVEAIFSEMQEKSCKPNVITYTIFMHALGKAKQVNKAL 359

Query: 303 KVYEKMKSDDCLTDTSFYSSLIFILSKAVR-------------------FLIYNTMISSA 343
           +VYE MKS+ C+ D SFYSSLIF+L+++ R                    L YNTMI+SA
Sbjct: 360 EVYEMMKSNCCVPDASFYSSLIFVLTQSGRLKDAWDVFEDMKKQGVSPDLLTYNTMITSA 419

Query: 344 CVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLM--------- 394
           C   EE NALKL +++EEDSCKPD +T+A  LKMCC KKR+K    +LN M         
Sbjct: 420 CTHLEEENALKLLRRMEEDSCKPDIQTYAPLLKMCCRKKRIKVLKFLLNHMFKNNISIDL 479

Query: 395 -----------------------REMLSKGIVPQESTHKMLAEELEKKSLGNAKERIDEL 431
                                   EM+ KG++P++ T+KML EELE+ +L  AKE+I +L
Sbjct: 480 GTYVLLVGGLCKSGKLELACSFFEEMVMKGLIPRDRTYKMLVEELEQNNLTEAKEKIQKL 539

Query: 432 LTHATEQ 438
           +    +Q
Sbjct: 540 MFQTEDQ 546

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225432738|ref|XP_002279088.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22670, mitochondrial [Vitis vinifera]

 Score =  404 bits (1037), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 243/527 (46%), Positives = 307/527 (58%), Gaps = 111/527 (21%)

Query: 22  INPLGCLLCNRHCITN------ELTGLPSWLKFFDTQSP-----DEDFVIPSLASWVESL 70
           +N L  L  N  C T       E   LP W+KF    +P     D+DFVIP LA W E+ 
Sbjct: 9   LNALHYLSLNPFCTTTGSPTTAESPELPDWVKFSQNNNPAGSDSDDDFVIPKLAYWAENQ 68

Query: 71  KLNEQSRISSHALSEDHETDVDKVSEILRKRYPSPDKVVEAL----------------KC 114
           K + +S++  + L E  ++D+DK+SE+L+ R+ S D VV+AL                K 
Sbjct: 69  KHDHRSKVDGYVLKETIDSDIDKISELLKFRHSSADAVVQALGGCGVSVSESLVEQVLKR 128

Query: 115 FC---------FTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVS 165
           F          F WAK QTGY H+  +YN+MV+ LGK KKF LMWELV+E+D L  GYVS
Sbjct: 129 FSNDWIPAFGFFKWAKAQTGYRHSMNSYNSMVDILGKLKKFDLMWELVEEMDRLG-GYVS 187

Query: 166 LAAMSTVMRRL-----------------------DTRAMSVLMDTLVKRNSVAHAYKVFL 202
           LA M+ VMRRL                       DT AM+ LMD LVK NSV HA  VF+
Sbjct: 188 LATMTKVMRRLARASRWKDAIEAFRGMERFGVKKDTLAMNTLMDALVKENSVEHANDVFV 247

Query: 203 KFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKD 262
           +FKD I L+   F+VLIHGWCK RK D A K+M EM +HGF PD +SYT  +E YCREKD
Sbjct: 248 EFKDSILLNPHTFNVLIHGWCKARKMDNALKSMAEMKEHGFCPDVISYTSIVEAYCREKD 307

Query: 263 FRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSS 322
           FRKV+  L EM+EKGC P+V+T TIVMHAL K K+I +AL+VYEKMK   C+ DTSFYSS
Sbjct: 308 FRKVNSVLNEMEEKGCPPNVVTYTIVMHALGKGKEISKALEVYEKMKGSSCVPDTSFYSS 367

Query: 323 LIFILSKAVRF-------------------LIYNTMISSACVRSEEGNALKLRQKIEEDS 363
           LI+ILSKA R                    L YNTMIS+AC+ S+E +ALKL  K+EE S
Sbjct: 368 LIYILSKAGRLKDARDVFEDMTKQGAIPDVLTYNTMISAACMHSQEEDALKLLLKMEESS 427

Query: 364 CKPDCETHARSLKMCCHKKRMKDGMLVLNLM----------------------------- 394
           CKPD  T++  LKMCC   RMK    +LN M                             
Sbjct: 428 CKPDLNTYSPLLKMCCRNNRMKVLSALLNHMFKNDISLEVGTYSLLVHGLCKSGKLEHAC 487

Query: 395 ---REMLSKGIVPQESTHKMLAEELEKKSLGNAKERIDELLTHATEQ 438
               EM+SKG+VP++ THK+L +ELEKKS+  AKER+++L++ A +Q
Sbjct: 488 LFFEEMVSKGLVPKDCTHKLLLKELEKKSMVEAKERVEKLMSQARQQ 534

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224107985|ref|XP_002314678.1| predicted protein [Populus trichocarpa] gi|222863718|gb|EEF00849.1| predicted protein [Populus trichocarpa]

 Score =  376 bits (965), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 219/498 (43%), Positives = 281/498 (56%), Gaps = 104/498 (20%)

Query: 38  ELTGLPSWLKFFDTQSP----DEDFVIPSLASWVESLKLNEQSRISSHALSEDHETDVDK 93
           E   LP+WL     Q P    D DFVIPSLA+WVE+  L     + S  L E   ++ DK
Sbjct: 1   ESPDLPTWLSNSQNQKPSDPDDGDFVIPSLANWVENPNLETHRNVPSPLLFEPQVSNADK 60

Query: 94  VSEILRKRYPSPDKVVEALK---------------------CFC----FTWAKTQTGYMH 128
           +SEIL+KRY S   VV+AL                      C      F WAK QT Y+H
Sbjct: 61  LSEILKKRYSSEAAVVKALNESGIDATNELVSQILMRFDSHCVVAFGVFIWAKNQTSYVH 120

Query: 129 TPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRL------------ 176
           TPE Y+ M++ LGK KKF LMW LV+++  L NGYVSLA  S VMRRL            
Sbjct: 121 TPELYDYMIDILGKFKKFSLMWSLVEQMKGL-NGYVSLATASKVMRRLAKARKYKDAIDV 179

Query: 177 -----------DTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKT 225
                      D  A++VLMD LVK   V  A+  FL+FKDCI+L S  F++LIHG+CK 
Sbjct: 180 FRGIEKYGASKDREALNVLMDALVKEGDVEDAHSAFLEFKDCITLDSSSFNILIHGYCKA 239

Query: 226 RKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITC 285
           R    A+K M+EM +HGF PD VSY+CFI  YC +KDFR V+    EMQEKGCKP+VIT 
Sbjct: 240 RMFVVARKIMEEMEKHGFHPDVVSYSCFIAAYCEQKDFRNVEAVFDEMQEKGCKPNVITY 299

Query: 286 TIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVR------------- 332
           T VMHAL KA+Q+ EAL+VYEKMK + CL D+ FYSSLI++LS++ R             
Sbjct: 300 TTVMHALGKARQLNEALEVYEKMKRNGCLPDSKFYSSLIYVLSQSGRIKDAWDVFEDMEK 359

Query: 333 ------FLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKD 386
                   +YNTMISSAC  S+ G+ALKL +++E DSCKPD +T+A  LKMCC +K +K 
Sbjct: 360 QGVCRNLWVYNTMISSACAHSQGGSALKLLERMEGDSCKPDVKTYAPLLKMCCRRKSIKL 419

Query: 387 GMLVLNLM--------------------------------REMLSKGIVPQESTHKMLAE 414
              +L+ M                                +E + KG+VP   T K L E
Sbjct: 420 LKFLLSHMFKNNVSVDLGTYTLLVNEFCRNGKLEHACFYFQEAVLKGMVPMVKTFKALVE 479

Query: 415 ELEKKSLGNAKERIDELL 432
           ELE+K++   KE+I++L+
Sbjct: 480 ELEQKNMKEMKEKIEKLM 497

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449442128|ref|XP_004138834.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22670, mitochondrial-like [Cucumis sativus]

 Score =  374 bits (959), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 230/510 (45%), Positives = 285/510 (55%), Gaps = 106/510 (20%)

Query: 36  TNELTGLPSWLKFFDT------QSPDEDFVIPSLASWVESLKLNEQSRISSHALSEDHET 89
            +E   LP W+KFFDT      +S D+ FVIP LA W+ES KL + +++    L E    
Sbjct: 82  VSESPDLPDWIKFFDTKTSTHLESEDDVFVIPPLAHWLESQKLEDNNKVVQKKLGETCNN 141

Query: 90  DVDKVSEILRKRYPSPDKVVEAL----------------KCF---------CFTWAKTQT 124
           +VDK+S +L  RYPSP+ V EAL                K F          F WAK Q 
Sbjct: 142 EVDKISTMLENRYPSPENVAEALNGKAYRVSNTLVAQLLKRFHNDWIQAYGIFKWAKDQI 201

Query: 125 GYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRL-------- 176
            Y H+PE+YN+MV+ LGK+K F LMWELV E++ L+ G VSL  MS V+RRL        
Sbjct: 202 PYRHSPESYNSMVDILGKAKNFRLMWELVDEMNHLA-GSVSLETMSKVIRRLARAGRHQE 260

Query: 177 ---------------DTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHG 221
                          DT AM+VLMD LVK  SV  A+ VF + K  I  +   F+VLIHG
Sbjct: 261 AIHAFRNIEKYGISTDTTAMNVLMDALVKEASVEDAHNVFRELKCSIPFNLASFNVLIHG 320

Query: 222 WCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPS 281
           +CK +K D A K M E+ + G  PD +SYT FIE +CREKDFR VD  L +M+ KGCKP+
Sbjct: 321 YCKAKKLDEAWKIMGEVEKSGLEPDVISYTAFIEAHCREKDFRNVDKVLVQMEHKGCKPN 380

Query: 282 VITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRF-------- 333
           VIT TI+MHAL KAKQI EALKVYEKMK + C+ D+SFYSSLIFIL KA R         
Sbjct: 381 VITFTIIMHALGKAKQINEALKVYEKMKKEGCVPDSSFYSSLIFILGKAGRLTDVKEIVE 440

Query: 334 -----------LIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKK 382
                      L YNT+IS AC  S+E  AL L  K+EE SCKPD +T+   LKM C KK
Sbjct: 441 DMEKQGVTPDVLTYNTLISCACAHSQEETALTLLLKMEEVSCKPDLKTYHPLLKMFCRKK 500

Query: 383 RMK------------------------------DGMLVL--NLMREMLSKGIVPQESTHK 410
           RMK                              +G L L  +   EMLSK +VP++ST K
Sbjct: 501 RMKVLKFLLDHMFKNDVSIEAGTYAILVRGLCENGKLHLACSFFGEMLSKAMVPKDSTFK 560

Query: 411 MLAEELEKKSLGNAKERIDELLTHATEQRT 440
           ML EELE+KS+    + I+ L+  AT Q T
Sbjct: 561 MLKEELERKSMLEEMKIIENLMFCATNQDT 590

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449505568|ref|XP_004162510.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22670, mitochondrial-like [Cucumis sativus]

 Score =  373 bits (958), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 230/510 (45%), Positives = 285/510 (55%), Gaps = 106/510 (20%)

Query: 36  TNELTGLPSWLKFFDT------QSPDEDFVIPSLASWVESLKLNEQSRISSHALSEDHET 89
            +E   LP W+KFFDT      +S D+ FVIP LA W+ES KL + +++    L E    
Sbjct: 105 VSESPDLPDWIKFFDTKTSTHLESEDDVFVIPPLAHWLESQKLEDNNKVVQKKLGETCNN 164

Query: 90  DVDKVSEILRKRYPSPDKVVEAL----------------KCF---------CFTWAKTQT 124
           +VDK+S +L  RYPSP+ V EAL                K F          F WAK Q 
Sbjct: 165 EVDKISTMLENRYPSPENVAEALNGKAYRVSNTLVAQLLKRFHNDWIQAYGIFKWAKDQI 224

Query: 125 GYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRL-------- 176
            Y H+PE+YN+MV+ LGK+K F LMWELV E++ L+ G VSL  MS V+RRL        
Sbjct: 225 PYRHSPESYNSMVDILGKAKNFRLMWELVDEMNHLA-GSVSLETMSKVIRRLARAGRHQE 283

Query: 177 ---------------DTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHG 221
                          DT AM+VLMD LVK  SV  A+ VF + K  I  +   F+VLIHG
Sbjct: 284 AIHAFRNIEKYGISTDTTAMNVLMDALVKEASVEDAHNVFRELKCSIPFNLASFNVLIHG 343

Query: 222 WCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPS 281
           +CK +K D A K M E+ + G  PD +SYT FIE +CREKDFR VD  L +M+ KGCKP+
Sbjct: 344 YCKAKKLDEAWKIMGEVEKSGLEPDVISYTAFIEAHCREKDFRNVDKVLVQMEHKGCKPN 403

Query: 282 VITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRF-------- 333
           VIT TI+MHAL KAKQI EALKVYEKMK + C+ D+SFYSSLIFIL KA R         
Sbjct: 404 VITFTIIMHALGKAKQINEALKVYEKMKKEGCVPDSSFYSSLIFILGKAGRLTDVKEIVE 463

Query: 334 -----------LIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKK 382
                      L YNT+IS AC  S+E  AL L  K+EE SCKPD +T+   LKM C KK
Sbjct: 464 DMEKQGVTPDVLTYNTLISCACAHSQEETALTLLLKMEEVSCKPDLKTYHPLLKMFCRKK 523

Query: 383 RMK------------------------------DGMLVL--NLMREMLSKGIVPQESTHK 410
           RMK                              +G L L  +   EMLSK +VP++ST K
Sbjct: 524 RMKVLKFLLDHMFKNDVSIEAGTYAILVRGLCENGKLHLACSFFGEMLSKAMVPKDSTFK 583

Query: 411 MLAEELEKKSLGNAKERIDELLTHATEQRT 440
           ML EELE+KS+    + I+ L+  AT Q T
Sbjct: 584 MLKEELERKSMLEEMKIIENLMFCATNQDT 613

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356495784|ref|XP_003516753.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22670, mitochondrial-like [Glycine max]

 Score =  340 bits (872), Expect = 8e-91,   Method: Compositional matrix adjust.
 Identities = 218/542 (40%), Positives = 294/542 (54%), Gaps = 120/542 (22%)

Query: 1   MPPKHDIWKLLSQSHLQKHHKINPLGC--------LLCNRHCITNELTGLPSWLKFFDTQ 52
           MP K    KL +       H+++P           L  N  C   E   LP WLKF DT 
Sbjct: 1   MPSKFRFLKLFT-------HRLSPRTAAANGSHRFLYGNPLCTMAESPELPPWLKFSDTP 53

Query: 53  SP-----DEDFVIPSLASWVESLKLNEQSRISSHALSEDHETDVDKVSEILRKRYPSPDK 107
           +P     D++FVIPSLA WV++  L  + ++ + +  +D+  +++ V+++L+KRYPSP+ 
Sbjct: 54  TPPDADSDDNFVIPSLAHWVDTHMLTTKPKVLTQSPKQDNLDELEAVTKVLQKRYPSPEL 113

Query: 108 VVEALKCFCFT-------------------------WAKTQTGYMHTPETYNAMVEALGK 142
              AL    F                          WAK+ TGY H+PE YN MV+ LGK
Sbjct: 114 ASLALDGLSFQPSSGLVSQVLNRFSNDWVPALGFFKWAKSLTGYRHSPELYNLMVDILGK 173

Query: 143 SKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRL-----------------------DTR 179
            + F  M ELV+E+  L  GYV+L  M+ VMRRL                       DT 
Sbjct: 174 CRSFDSMSELVEEMARL-EGYVTLETMTKVMRRLARARKHEDAIEAFGRMEKFGVKKDTA 232

Query: 180 AMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMF 239
           A++VL+D LVK +SV HA+KV L+FK  I LSS+ F+VL+HGWC+ R  D A+KAM++M 
Sbjct: 233 ALNVLIDALVKGDSVEHAHKVVLEFKGSIPLSSRSFNVLMHGWCRARDFDNARKAMEDMK 292

Query: 240 QHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIY 299
           +HGF PD  SYT FIE Y  E+DFRKVD  L+EM+E GC P+ +T T VM  L KA Q+ 
Sbjct: 293 EHGFEPDVFSYTNFIEAYGHERDFRKVDQVLEEMRENGCPPNAVTYTSVMLHLGKAGQLR 352

Query: 300 EALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRF-------------------LIYNTMI 340
           +AL+VYEKMKSD C+ DT FYSS+IFIL KA R                    + YN+MI
Sbjct: 353 KALEVYEKMKSDGCVADTPFYSSMIFILGKAGRLKDACDVFEDMPKQGVVRDVVTYNSMI 412

Query: 341 SSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHK------KRMKDGM------ 388
           S+AC  S E  AL+L +++E+ SCKP+  T+ R LKMCC K      K + D M      
Sbjct: 413 STACAHSREETALRLLKEMEDGSCKPNVGTYHRLLKMCCKKKRMKVLKFLLDHMFKNNIS 472

Query: 389 -------LVLNLMR-------------EMLSKGIVPQESTHKMLAEELEKKSLGNAKERI 428
                  L++N +R             EM+ +G  P+ ST K LA ELE KS+   K R+
Sbjct: 473 PDLATYSLLVNALRKSGKVEDAYSFLEEMVLRGFTPKPSTLKKLAGELESKSMLEEKVRV 532

Query: 429 DE 430
           +E
Sbjct: 533 EE 534

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356540343|ref|XP_003538649.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22670, mitochondrial-like [Glycine max]

 Score =  335 bits (860), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 198/515 (38%), Positives = 275/515 (53%), Gaps = 110/515 (21%)

Query: 34  CITNELTGLPSWLKFFDTQSP-----DEDFVIPSLASWVESLKLNEQSRISSHALSEDHE 88
           C   E   LP WLKF DT +P     D++FVIPSLA WV++  L  + ++ + +  +D+ 
Sbjct: 32  CTMAESPELPPWLKFSDTPTPPDADSDDNFVIPSLAHWVDTHMLITKPKVLTQSPKQDNL 91

Query: 89  TDVDKVSEILRKRYPSPDKVVEALKCFCFT-------------------------WAKTQ 123
            ++D ++++L+KRYPSP+    AL    F                          WAK+Q
Sbjct: 92  DELDAITKVLKKRYPSPELAALALDGLSFQPSSGLVSQVLNRFSNDWVPALGFFKWAKSQ 151

Query: 124 TGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRL------- 176
           TGY H+PE  N MV+ LGK K F  M +LV+E+ +L  GYV+L  M+ V+RRL       
Sbjct: 152 TGYRHSPELCNLMVDILGKCKSFDPMSDLVEEMAKLEQGYVTLETMAKVIRRLAKARKHE 211

Query: 177 ----------------DTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIH 220
                           DT A++VL+D LVK +SV HA+KV L+FK  I LSS  F+VL+H
Sbjct: 212 DAIEAFRRMDKFGVNKDTAALNVLIDALVKGDSVEHAHKVVLEFKGLIPLSSHSFNVLMH 271

Query: 221 GWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKP 280
           GWC+ RK D A+KAM++M + GF PD  SYT FIE YC E+DFRKVD  L+EM+E GC P
Sbjct: 272 GWCRARKFDNARKAMEDMKELGFEPDVFSYTSFIEAYCHERDFRKVDQVLEEMRENGCPP 331

Query: 281 SVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRF------- 333
           + +T T VM  L KA Q+ +AL+VYEKMK D C+ DT  YS +IFIL KA R        
Sbjct: 332 NAVTYTTVMLHLGKAGQLSKALEVYEKMKCDGCVADTPVYSCMIFILGKAGRLKDACDVF 391

Query: 334 ------------LIYNTMISSACVRSEEGNALKLRQKIEEDSCK---------------- 365
                       + YNTMIS+AC  S E  AL+L +++E+ SCK                
Sbjct: 392 EDMPKQGVVRDVVTYNTMISTACAHSREETALRLLKEMEDGSCKPNVGTYHPLLKMCCKK 451

Query: 366 -------------------PDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQE 406
                              PD  T++  +   C   ++ D     + + EM+ KG  P+ 
Sbjct: 452 KRMKVLKFLLDHMFKNDISPDLATYSLLVNALCKTGKVADA---YSFLEEMVLKGFTPKP 508

Query: 407 STHKMLAEELEKKSLGNAKERIDELLTHATEQRTF 441
           ST K LA ELE  S+   KER++E +   ++++  
Sbjct: 509 STLKGLAGELESLSMLEEKERVEEWMDRFSQKQNI 543

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15228825|ref|NP_188906.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] gi|75274241|sp|Q9LUJ4.1|PP248_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g22670, mitochondrial; Flags: Precursor gi|9279685|dbj|BAB01242.1| unnamed protein product [Arabidopsis thaliana] gi|332643142|gb|AEE76663.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]

 Score =  318 bits (816), Expect = 3e-84,   Method: Compositional matrix adjust.
 Identities = 203/519 (39%), Positives = 275/519 (52%), Gaps = 121/519 (23%)

Query: 35  ITNELTGLPSWLKFFDTQSP----------DEDFVIPSLASWVESLKLNEQSRISSHALS 84
           +  E   LPSW+K F +  P          DEDFVIPSLA+WVES K + Q ++S   + 
Sbjct: 37  VAAESPELPSWIKDFLSNKPSSSSSSVSKDDEDFVIPSLANWVESQKFSRQ-QVSEGNVV 95

Query: 85  EDHETDVDKVSEILRKRYPSPDKVVEAL-KCFC------------------------FTW 119
           +    D+DKV + L K+  S + VV+ L KC                          F W
Sbjct: 96  KKPVEDIDKVCDFLNKKDTSHEDVVKELSKCDVVVTESLVLQVLRRFSNGWNQAYGFFIW 155

Query: 120 AKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNG-YVSLAAMSTVMRRL-- 176
           A +QTGY+H+  TYNAMV+ LGK + F LMWELV E+++      V+L  MS VMRRL  
Sbjct: 156 ANSQTGYVHSGHTYNAMVDVLGKCRNFDLMWELVNEMNKNEESKLVTLDTMSKVMRRLAK 215

Query: 177 ----------------------DTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQI 214
                                 DT AM+ LMD LVK NS+ HA++VFLK  D I   ++ 
Sbjct: 216 SGKYNKAVDAFLEMEKSYGVKTDTIAMNSLMDALVKENSIEHAHEVFLKLFDTIKPDART 275

Query: 215 FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQ 274
           F++LIHG+CK RK D A+  M  M    F+PD V+YT F+E YC+E DFR+V+  L+EM+
Sbjct: 276 FNILIHGFCKARKFDDARAMMDLMKVTEFTPDVVTYTSFVEAYCKEGDFRRVNEMLEEMR 335

Query: 275 EKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRF- 333
           E GC P+V+T TIVMH+L K+KQ+ EAL VYEKMK D C+ D  FYSSLI ILSK  RF 
Sbjct: 336 ENGCNPNVVTYTIVMHSLGKSKQVAEALGVYEKMKEDGCVPDAKFYSSLIHILSKTGRFK 395

Query: 334 ------------------LIYNTMISSACVRSEEGNALKLRQKIEE---DSCKPDCETHA 372
                             L+YNTMIS+A   S +  AL+L +++E+   +SC P+ ET+A
Sbjct: 396 DAAEIFEDMTNQGVRRDVLVYNTMISAALHHSRDEMALRLLKRMEDEEGESCSPNVETYA 455

Query: 373 RSL-----------------------------------KMCCHKKRMKDGMLVLNLMREM 397
             L                                   +  C   ++++  L      E 
Sbjct: 456 PLLKMCCHKKKMKLLGILLHHMVKNDVSIDVSTYILLIRGLCMSGKVEEACL---FFEEA 512

Query: 398 LSKGIVPQESTHKMLAEELEKKSLGNAKERIDELLTHAT 436
           + KG+VP++ST KML +ELEKK++  AK +I  L+   T
Sbjct: 513 VRKGMVPRDSTCKMLVDELEKKNMAEAKLKIQSLVQSKT 551

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224107983|ref|XP_002314677.1| predicted protein [Populus trichocarpa] gi|222863717|gb|EEF00848.1| predicted protein [Populus trichocarpa]

 Score =  312 bits (799), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 181/483 (37%), Positives = 262/483 (54%), Gaps = 103/483 (21%)

Query: 55  DEDFVIPSLASWVESLKLNEQSRISSHALSEDHETDVDKVSEILRKRYPSPDKVVEAL-- 112
           + +F I  LA+WV++  L     I++ + +     D+DKV  IL++ +PS D VV+AL  
Sbjct: 2   NGNFFISPLANWVDNPTLENFKSIAAESGTG---GDIDKVKGILKRHFPSEDAVVKALDE 58

Query: 113 -----------------------KCFCFTWAKTQTGYMHTPETYNAMVEALGKSKKFGLM 149
                                      F WAK QTGY+HTP  Y+ +V+ LGK KKFG+M
Sbjct: 59  SGINATNDLVSQLLERFSNQWITALGVFIWAKNQTGYVHTPRLYDLVVDILGKCKKFGIM 118

Query: 150 WELVKEIDELSNGYVSLAAMSTVMRRL-----------------------DTRAMSVLMD 186
           W++V E++EL NG VS + MS V+RRL                       DT A++++M 
Sbjct: 119 WKVVNEMNEL-NGQVSFSTMSIVVRRLASSGMYKDVIDVLRGLEKYRVKKDTVALNMVMH 177

Query: 187 TLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPD 246
            L K+     AY VFL+FKD I+L S  F++LIHG+C+ R  D A+K M+EM +HGF PD
Sbjct: 178 ALAKQGGAKDAYSVFLEFKDSITLDSHSFNILIHGYCEARMLDDARKTMEEMEKHGFRPD 237

Query: 247 GVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYE 306
             SYTCFI+ YC++KDFR V+  L EM EKGC+P VI  +I + AL KA++I EAL+VYE
Sbjct: 238 ASSYTCFIKAYCKQKDFRNVEVILNEMGEKGCEPDVIAYSIYIRALGKARKINEALEVYE 297

Query: 307 KMKSDDCLTDTSFYSSLIFILSKAVR-------------------FLIYNTMISSACVRS 347
           KM  + C  D  F+S+LI++L ++ R                      YN MI  AC   
Sbjct: 298 KMNKNSCKPDAKFFSTLIYVLGRSGRLNDAWYVFEDMENHGVSRDLWTYNAMIYHACANR 357

Query: 348 EEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLN--------------- 392
           +  +ALKL +++E +SCKPD ET+   LKMCC  K MK    +L+               
Sbjct: 358 QGNSALKLLERMEVNSCKPDLETYQPLLKMCCKMKDMKVLKFLLSHMFNNNVRIDLSTYA 417

Query: 393 -LMREM----------------LSKGIVPQESTHKMLAEELEKKSLGNAKERIDELLTHA 435
            L+RE+                +  GIVP++ T+++L +EL + ++   K +I++L+  A
Sbjct: 418 LLIRELAESGKLEHACFFFQDAVLNGIVPKDRTYEILLKELGQNNMVEMKGKIEKLMLQA 477

Query: 436 TEQ 438
            EQ
Sbjct: 478 KEQ 480

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357480939|ref|XP_003610755.1| Pentatricopeptide repeat-containing protein [Medicago truncatula] gi|355512090|gb|AES93713.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]

 Score =  309 bits (791), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 199/525 (37%), Positives = 275/525 (52%), Gaps = 110/525 (20%)

Query: 14  SHLQKHHKINPLGCLLCNRHCITNELTGLPSWLKFFDTQSP---DEDFVIPSLASWVESL 70
           S++  H  INP   ++ N    + E   LP W+ F D  +P   D+DFVIPSLA WV+S 
Sbjct: 68  SNVSPHFFINPFCTVVVN----SPESPELPPWVMFSDKPTPSNSDDDFVIPSLAHWVDSS 123

Query: 71  KLNEQSRISSHALSED--HETDVDKVSEILR-KRYPSPDKVVEAL--------------- 112
            L  + ++ +    E+  H  DV+K+S  L+ +R+ S D VV+AL               
Sbjct: 124 ILQTKPKLFAKPSLEESIHLEDVEKISTFLKEQRHSSHDHVVQALDGSGFRVSNSLVMQV 183

Query: 113 -KCFC---------FTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNG 162
            K F          F WAK QT Y+H+PE YN MV+ LGK+K+F LMW+LVKE+  +  G
Sbjct: 184 LKRFGNDWVAAYGFFIWAKKQTPYVHSPEVYNLMVDILGKAKEFDLMWKLVKEMKRIE-G 242

Query: 163 YVSLAAMSTVMRRL-----------------------DTRAMSVLMDTLVKRNSVAHAYK 199
           YV L  MS VMRR                        DT A++ L+D LVK  S+  A+ 
Sbjct: 243 YVCLDTMSKVMRRFAKAQRHEDAVEAFRGMGKYGVEKDTAALNKLLDALVKGQSIEIAHN 302

Query: 200 VFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCR 259
           V  +FK  + LSS  F++LI+GWCK R  + A+K M+E  +HGF PD  +Y  FIE YC 
Sbjct: 303 VLDEFKSSVPLSSPSFNILINGWCKVRNFEKARKVMEERKEHGFEPDVFTYNNFIESYCH 362

Query: 260 EKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSF 319
           +KDFRKVD  L+EM+  GC P+ +T TI++    KA Q+ +AL+ YE+MK D  + DT F
Sbjct: 363 DKDFRKVDEVLEEMRGNGCPPNAVTYTILLLGYGKAGQLSKALEEYERMKKDGIVPDTPF 422

Query: 320 YSSLIFILSKAVRF-------------------LIYNTMISSACVRSEEGNALKLRQKIE 360
           YSSL++IL KA R                    + YNTMIS+AC  S+E  AL+L +++E
Sbjct: 423 YSSLMYILGKAGRLKDACEVFDDMPKQGVVRDVVTYNTMISTACAHSKEETALRLLKEME 482

Query: 361 EDSCKPDCET----------------------HARSLKMCCHKKRM--------KDGMLV 390
           E SCKPD +T                      H     +C  +             G LV
Sbjct: 483 ETSCKPDLQTYHPLLKMCCKKKRMKVLKFLLDHMFKHDLCPDRGTYTLLVQSLSNSGKLV 542

Query: 391 --LNLMREMLSKGIVPQESTHKMLAEELEKKSLGNAKERIDELLT 433
                  EM+SKG  P E+T K+L  +LE KS+   K++I+EL+ 
Sbjct: 543 EACTFFEEMVSKGFTPMETTVKLLTRKLEIKSMLKEKDQIEELMA 587

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	441
TAIR|locus:2094394	562	AT3G22670 [Arabidopsis thalian	0.455	0.357	0.474	2.3e-56
TAIR|locus:2103075	508	AT3G04130 "AT3G04130" [Arabido	0.353	0.307	0.397	4.9e-29
TAIR|locus:2026346	510	AT1G71060 [Arabidopsis thalian	0.442	0.382	0.312	9.4e-19
TAIR|locus:2012883	537	AT1G20300 [Arabidopsis thalian	0.641	0.527	0.242	2.8e-15
TAIR|locus:2155730	915	AT5G65560 "AT5G65560" [Arabido	0.594	0.286	0.226	1.6e-14
TAIR|locus:2019085	763	AT1G74580 "AT1G74580" [Arabido	0.455	0.263	0.290	7.9e-14
TAIR|locus:2035206	523	AT1G52640 [Arabidopsis thalian	0.687	0.579	0.229	2.8e-13
TAIR|locus:2825891	458	AT1G77405 [Arabidopsis thalian	0.761	0.733	0.227	3.5e-13
TAIR|locus:2164910	747	EMB2745 "EMBRYO DEFECTIVE 2745	0.653	0.385	0.271	4.1e-13
TAIR|locus:2097395	638	AT3G49730 [Arabidopsis thalian	0.335	0.231	0.281	3.1e-10

TAIR|locus:2094394 AT3G22670 [Arabidopsis thaliana (taxid:3702)]

 Score = 458 (166.3 bits), Expect = 2.3e-56, Sum P(2) = 2.3e-56
 Identities = 101/213 (47%), Positives = 135/213 (63%)

Query:   121 KTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRA 180
             K +   + T +T + ++  L KS K+    + V    E+   Y     + T     DT A
Sbjct:   194 KNEESKLVTLDTMSKVMRRLAKSGKYN---KAVDAFLEMEKSY----GVKT-----DTIA 241

Query:   181 MSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQ 240
             M+ LMD LVK NS+ HA++VFLK  D I   ++ F++LIHG+CK RK D A+  M  M  
Sbjct:   242 MNSLMDALVKENSIEHAHEVFLKLFDTIKPDARTFNILIHGFCKARKFDDARAMMDLMKV 301

Query:   241 HGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYE 300
               F+PD V+YT F+E YC+E DFR+V+  L+EM+E GC P+V+T TIVMH+L K+KQ+ E
Sbjct:   302 TEFTPDVVTYTSFVEAYCKEGDFRRVNEMLEEMRENGCNPNVVTYTIVMHSLGKSKQVAE 361

Query:   301 ALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRF 333
             AL VYEKMK D C+ D  FYSSLI ILSK  RF
Sbjct:   362 ALGVYEKMKEDGCVPDAKFYSSLIHILSKTGRF 394

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2103075 AT3G04130 "AT3G04130" [Arabidopsis thaliana (taxid:3702)]

 Score = 297 (109.6 bits), Expect = 4.9e-29, Sum P(2) = 4.9e-29
 Identities = 62/156 (39%), Positives = 92/156 (58%)

Query:   177 DTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMK 236
             +T +M++L+DTL K   V  A  V L+ K  I+ ++  F++ IHGWCK  + + A   ++
Sbjct:   189 NTESMNLLLDTLCKEKRVEQARVVLLQLKSHITPNAHTFNIFIHGWCKANRVEEALWTIQ 248

Query:   237 EMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAK 296
             EM  HGF P  +SYT  I  YC++ +F KV   L EM+  G  P+ IT T +M +L   K
Sbjct:   249 EMKGHGFRPCVISYTTIIRCYCQQFEFIKVYEMLSEMEANGSPPNSITYTTIMSSLNAQK 308

Query:   297 QIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVR 332
             +  EAL+V  +MK   C  D+ FY+ LI  L++A R
Sbjct:   309 EFEEALRVATRMKRSGCKPDSLFYNCLIHTLARAGR 344

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2026346 AT1G71060 [Arabidopsis thaliana (taxid:3702)]

 Score = 251 (93.4 bits), Expect = 9.4e-19, P = 9.4e-19
 Identities = 65/208 (31%), Positives = 110/208 (52%)

Query:   117 FTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRL 176
             F WA+ Q G+ HT   YNA++E+LGK K+F L+W LV ++   +   +S    + + RR 
Sbjct:   115 FKWAENQKGFKHTTSNYNALIESLGKIKQFKLIWSLVDDMK--AKKLLSKETFALISRRY 172

Query:   177 DTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMK 236
               RA  V  + +       H  + F  FK    + S  F+ ++    K+R    AQK   
Sbjct:   173 -ARARKV-KEAI----GAFHKMEEF-GFK----MESSDFNRMLDTLSKSRNVGDAQKVFD 221

Query:   237 EMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAK 296
             +M +  F PD  SYT  +E + +E +  +VD   +EM+++G +P V+   I+++A  KAK
Sbjct:   222 KMKKKRFEPDIKSYTILLEGWGQELNLLRVDEVNREMKDEGFEPDVVAYGIIINAHCKAK 281

Query:   297 QIYEALKVYEKMKSDDCLTDTSFYSSLI 324
             +  EA++ + +M+  +C      + SLI
Sbjct:   282 KYEEAIRFFNEMEQRNCKPSPHIFCSLI 309

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2012883 AT1G20300 [Arabidopsis thaliana (taxid:3702)]

 Score = 221 (82.9 bits), Expect = 2.8e-15, P = 2.8e-15
 Identities = 75/309 (24%), Positives = 135/309 (43%)

Query:   117 FTWAKTQTGYMH-TPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRR 175
             F WA ++  Y H +P  YN M++  GK ++F L W L+ ++ +  N  +S+   + ++RR
Sbjct:   137 FNWATSRDDYDHKSPHPYNEMIDLSGKVRQFDLAWHLI-DLMKSRNVEISIETFTILIRR 195

Query:   176 LDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQI-FDVLIHGWCKTRKSDYAQKA 234
                          V+    + A   F + +D   +  +I F ++I    + R++  AQ  
Sbjct:   196 Y------------VRAGLASEAVHCFNRMEDYGCVPDKIAFSIVISNLSRKRRASEAQSF 243

Query:   235 MKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEK 294
                + +  F PD + YT  +  +CR  +  + +   KEM+  G +P+V T +IV+ AL +
Sbjct:   244 FDSL-KDRFEPDVIVYTNLVRGWCRAGEISEAEKVFKEMKLAGIEPNVYTYSIVIDALCR 302

Query:   295 AKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVR----FLIYNTMISSACVRSEEG 350
               QI  A  V+  M    C  +   +++L+ +  KA R      +YN M    C    E 
Sbjct:   303 CGQISRAHDVFADMLDSGCAPNAITFNNLMRVHVKAGRTEKVLQVYNQMKKLGC----EP 358

Query:   351 NALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHK 410
             + +     IE      + E   + L     KK   +      + R +  K  V     H+
Sbjct:   359 DTITYNFLIEAHCRDENLENAVKVLNTMIKKKCEVNASTFNTIFRYIEKKRDV--NGAHR 416

Query:   411 MLAEELEKK 419
             M ++ +E K
Sbjct:   417 MYSKMMEAK 425

GO:0005739 "mitochondrion" evidence=ISM;IDA

TAIR|locus:2155730 AT5G65560 "AT5G65560" [Arabidopsis thaliana (taxid:3702)]

 Score = 218 (81.8 bits), Expect = 1.6e-14, P = 1.6e-14
 Identities = 66/291 (22%), Positives = 131/291 (45%)

Query:   119 WAKTQTGYMHTPETYNAMVEALGKSKKFGLMWEL----VKEIDELSNG-YV-SLAAMSTV 172
             W      Y H+  +Y +++  L  +   G+++++    +K  D + +  YV  L      
Sbjct:   112 WISQNPRYKHSVYSYASLLTLLINNGYVGVVFKIRLLMIKSCDSVGDALYVLDLCRKMNK 171

Query:   173 MRRLDTR------AMSVLMDTLVKRNSVAHAYKVFLKF-KDCISLSSQIFDVLIHGWCKT 225
               R + +        + L+++L +   V    +V+++  +D +  +   ++ +++G+CK 
Sbjct:   172 DERFELKYKLIIGCYNTLLNSLARFGLVDEMKQVYMEMLEDKVCPNIYTYNKMVNGYCKL 231

Query:   226 RKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITC 285
                + A + + ++ + G  PD  +YT  I  YC+ KD         EM  KGC+ + +  
Sbjct:   232 GNVEEANQYVSKIVEAGLDPDFFTYTSLIMGYCQRKDLDSAFKVFNEMPLKGCRRNEVAY 291

Query:   286 TIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACV 345
             T ++H L  A++I EA+ ++ KMK D+C                 VR   Y  +I S C 
Sbjct:   292 THLIHGLCVARRIDEAMDLFVKMKDDECFP--------------TVR--TYTVLIKSLCG 335

Query:   346 RSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMRE 396
                +  AL L +++EE   KP+  T+   +   C + + +    +L  M E
Sbjct:   336 SERKSEALNLVKEMEETGIKPNIHTYTVLIDSLCSQCKFEKARELLGQMLE 386

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2019085 AT1G74580 "AT1G74580" [Arabidopsis thaliana (taxid:3702)]

 Score = 190 (71.9 bits), Expect = 7.9e-14, Sum P(2) = 7.9e-14
 Identities = 65/224 (29%), Positives = 107/224 (47%)

Query:   117 FTWAKTQTGYMHTPETYNAMV---EALGKSKKFG-LMWELVKEIDELSN-GYVSLAA-MS 170
             FT+     G  H  ET  A+    EALGK  K   +++  +  I  LSN G +  AA ++
Sbjct:   357 FTYRSLIDGLCHEGETNRALALFNEALGKGIKPNVILYNTL--IKGLSNQGMILEAAQLA 414

Query:   171 TVMRRL----DTRAMSVLMDTLVKRNSVAHA---YKVFLK---FKDCISLSSQIFDVLIH 220
               M       + +  ++L++ L K   V+ A    KV +    F D  +     F++LIH
Sbjct:   415 NEMSEKGLIPEVQTFNILVNGLCKMGCVSDADGLVKVMISKGYFPDIFT-----FNILIH 469

Query:   221 GWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKP 280
             G+    K + A + +  M  +G  PD  +Y   +   C+   F  V  T K M EKGC P
Sbjct:   470 GYSTQLKMENALEILDVMLDNGVDPDVYTYNSLLNGLCKTSKFEDVMETYKTMVEKGCAP 529

Query:   281 SVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLI 324
             ++ T  I++ +L + +++ EAL + E+MK+     D   + +LI
Sbjct:   530 NLFTFNILLESLCRYRKLDEALGLLEEMKNKSVNPDAVTFGTLI 573

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2035206 AT1G52640 [Arabidopsis thaliana (taxid:3702)]

 Score = 203 (76.5 bits), Expect = 2.8e-13, P = 2.8e-13
 Identities = 80/349 (22%), Positives = 148/349 (42%)

Query:   117 FTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMR-- 174
             F WA+    + H+ E+Y+ +VE LG SK+F L+W+ + E  E +   +S      V R  
Sbjct:    89 FLWARRIPDFAHSLESYHILVEILGSSKQFALLWDFLIEAREYNYFEISSKVFWIVFRAY 148

Query:   175 ---RLDTRA------------------MSVLMDTLVKRNSVAHAYKVFLKFKDC-ISLSS 212
                 L + A                  +  L+ +L  +  V HA + F K K   I  S+
Sbjct:   149 SRANLPSEACRAFNRMVEFGIKPCVDDLDQLLHSLCDKKHVNHAQEFFGKAKGFGIVPSA 208

Query:   213 QIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKE 272
             + + +L+ GW + R +  A+K   EM +     D ++Y   ++  C+  D        +E
Sbjct:   209 KTYSILVRGWARIRDASGARKVFDEMLERNCVVDLLAYNALLDALCKSGDVDGGYKMFQE 268

Query:   273 MQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVR 332
             M   G KP   +  I +HA   A  ++ A KV ++MK  D + +   Y+           
Sbjct:   269 MGNLGLKPDAYSFAIFIHAYCDAGDVHSAYKVLDRMKRYDLVPNV--YT----------- 315

Query:   333 FLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLN 392
                +N +I + C   +  +A  L  ++ +    PD  T+   +   C    +     +L+
Sbjct:   316 ---FNHIIKTLCKNEKVDDAYLLLDEMIQKGANPDTWTYNSIMAYHCDHCEVNRATKLLS 372

Query:   393 LMREMLSKGIVPQESTHKMLAEELEKKSLGNAKERIDELLTHATEQRTF 441
              M    +K  +P   T+ M+ + L +  +G   +R  E+    +E++ +
Sbjct:   373 RMDR--TK-CLPDRHTYNMVLKLLIR--IGRF-DRATEIWEGMSERKFY 415

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2825891 AT1G77405 [Arabidopsis thaliana (taxid:3702)]

 Score = 201 (75.8 bits), Expect = 3.5e-13, P = 3.5e-13
 Identities = 87/383 (22%), Positives = 157/383 (40%)

Query:    75 QSRISSHALSEDHETDVDKVSEILRKRYPSPDKVVEAL-KCF-CFTWAKTQTGYMHTPET 132
             +S +    LS++ +    +V  +    Y  P KV   L K    F W +T  G+ H   T
Sbjct:    70 RSPLKQRNLSDESQRRRSEVLVLGPGAYMDPKKVSIGLQKALEFFFWIETHFGFDHNEIT 129

Query:   133 YNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRN 192
                M   L K   F  +W+ ++++    NG         V+    T +++ LM  L +  
Sbjct:   130 CRDMACLLAKGNDFKGLWDFLRQVSRRENG-------KNVVT---TASITCLMKCLGEEG 179

Query:   193 SVAHAYKVFLKFKD--CISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFS--PDGV 248
              V  A   F + K+  C       ++ +I+  C+      A+  + +M   GF   PD  
Sbjct:   180 FVKEALATFYRMKEYHC-KPDVYAYNTIINALCRVGNFKKARFLLDQMQLPGFRYPPDTY 238

Query:   249 SYTCFIEHYCR-------EKDFRK----VDYTLKEMQEKGCKPSVITCTIVMHALEKAKQ 297
             +YT  I  YCR        K  R+     +   +EM  +G  P V+T   ++    K  +
Sbjct:   239 TYTILISSYCRYGMQTGCRKAIRRRMWEANRMFREMLFRGFVPDVVTYNCLIDGCCKTNR 298

Query:   298 IYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQ 357
             I  AL+++E MK+  C+ +   Y+S I       R+      I  A         ++  +
Sbjct:   299 IGRALELFEDMKTKGCVPNQVTYNSFI-------RYYSVTNEIEGAI------EMMRTMK 345

Query:   358 KIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELE 417
             K+      P   T+   +      +R  +     +L+ EM+  G+VP+E T+K++ + L 
Sbjct:   346 KLGHGV--PGSSTYTPLIHALVETRRAAEAR---DLVVEMVEAGLVPREYTYKLVCDALS 400

Query:   418 KKSLGNA-KERIDELLTHATEQR 439
              + L +   E + + +    +QR
Sbjct:   401 SEGLASTLDEELHKRMREGIQQR 423

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2164910 EMB2745 "EMBRYO DEFECTIVE 2745" [Arabidopsis thaliana (taxid:3702)]

 Score = 204 (76.9 bits), Expect = 4.1e-13, P = 4.1e-13
 Identities = 85/313 (27%), Positives = 137/313 (43%)

Query:   125 GYMHTPETYNAMVEA---LGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAM 181
             G+  +  TYNA++      GK +    + E +KE   LS   VS    STV+     R+ 
Sbjct:   410 GFSPSVVTYNALINGHCVTGKMEDAIAVLEDMKE-KGLSPDVVSY---STVLSGF-CRSY 464

Query:   182 SVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQH 241
              V     VKR  V    K      D I+ SS     LI G+C+ R++  A    +EM + 
Sbjct:   465 DVDEALRVKREMVEKGIK-----PDTITYSS-----LIQGFCEQRRTKEACDLYEEMLRV 514

Query:   242 GFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEA 301
             G  PD  +YT  I  YC E D  K      EM EKG  P V+T +++++ L K  +  EA
Sbjct:   515 GLPPDEFTYTALINAYCMEGDLEKALQLHNEMVEKGVLPDVVTYSVLINGLNKQSRTREA 574

Query:   302 LKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEE 361
              ++  K+  ++ +     Y +LI   S  + F    ++I   C++     A ++ + +  
Sbjct:   575 KRLLLKLFYEESVPSDVTYHTLIENCSN-IEFKSVVSLIKGFCMKGMMTEADQVFESMLG 633

Query:   362 DSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEKKSL 421
              + KPD   +   +   C   R  D      L +EM+  G +    T   L + L K+  
Sbjct:   634 KNHKPDGTAYNIMIHGHC---RAGDIRKAYTLYKEMVKSGFLLHTVTVIALVKALHKE-- 688

Query:   422 GNAKERIDELLTH 434
             G   E ++ ++ H
Sbjct:   689 GKVNE-LNSVIVH 700

GO:0005739 "mitochondrion" evidence=ISM;IDA

GO:0009793 "embryo development ending in seed dormancy" evidence=NAS

TAIR|locus:2097395 AT3G49730 [Arabidopsis thaliana (taxid:3702)]

 Score = 177 (67.4 bits), Expect = 3.1e-10, P = 3.1e-10
 Identities = 42/149 (28%), Positives = 77/149 (51%)

Query:   177 DTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMK 236
             D      L+D L K  SV  A KVF   ++    + + F  L++GWC+  K   A++ + 
Sbjct:   201 DEYVFGCLLDALCKNGSVKEASKVFEDMREKFPPNLRYFTSLLYGWCREGKLMEAKEVLV 260

Query:   237 EMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKA- 295
             +M + G  PD V +T  +  Y            + +M+++G +P+V   T+++ AL +  
Sbjct:   261 QMKEAGLEPDIVVFTNLLSGYAHAGKMADAYDLMNDMRKRGFEPNVNCYTVLIQALCRTE 320

Query:   296 KQIYEALKVYEKMKSDDCLTDTSFYSSLI 324
             K++ EA++V+ +M+   C  D   Y++LI
Sbjct:   321 KRMDEAMRVFVEMERYGCEADIVTYTALI 349

GO:0005739 "mitochondrion" evidence=ISM

GO:0007131 "reciprocal meiotic recombination" evidence=RCA

GO:0009560 "embryo sac egg cell differentiation" evidence=RCA

GO:0009691 "cytokinin biosynthetic process" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	441
pfam13041	50	pfam13041, PPR_2, PPR repeat family	9e-11
pfam13041	50	pfam13041, PPR_2, PPR repeat family	7e-07
pfam13041	50	pfam13041, PPR_2, PPR repeat family	4e-06
TIGR00756	35	TIGR00756, PPR, pentatricopeptide repeat domain (P	8e-06
PLN03218	1060	PLN03218, PLN03218, maturation of RBCL 1; Provisio	8e-06
PLN03218	1060	PLN03218, PLN03218, maturation of RBCL 1; Provisio	3e-05
pfam12854	34	pfam12854, PPR_1, PPR repeat	0.001
pfam13812	34	pfam13812, PPR_3, Pentatricopeptide repeat domain	0.001
pfam01535	31	pfam01535, PPR, PPR repeat	0.003

>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family

 Score = 56.6 bits (138), Expect = 9e-11
 Identities = 16/48 (33%), Positives = 28/48 (58%)

Query: 245 PDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHAL 292
           PD V+Y   I+ YC++    +      EM+++G KP+V T +I++  L
Sbjct: 1   PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48

This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50

>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family

 Score = 45.5 bits (109), Expect = 7e-07
 Identities = 14/45 (31%), Positives = 23/45 (51%)

Query: 280 PSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLI 324
           P V+T   ++    K  ++ EALK++ +MK      +   YS LI
Sbjct: 1   PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILI 45

This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50

>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family

 Score = 43.5 bits (104), Expect = 4e-06
 Identities = 15/45 (33%), Positives = 25/45 (55%)

Query: 215 FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCR 259
           ++ LI G+CK  K + A K   EM + G  P+  +Y+  I+  C+
Sbjct: 6   YNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50

This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50

>gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif)

 Score = 42.1 bits (100), Expect = 8e-06
 Identities = 11/35 (31%), Positives = 18/35 (51%)

Query: 248 VSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSV 282
           V+Y   I+  C+     +     KEM+E+G +P V
Sbjct: 1   VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35

This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35

>gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional

 Score = 47.9 bits (114), Expect = 8e-06
 Identities = 60/310 (19%), Positives = 116/310 (37%), Gaps = 40/310 (12%)

Query: 133 YNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRN 192
           Y  ++    KS K   M+E+  E+             + V   + T     L+D   +  
Sbjct: 475 YTTLISTCAKSGKVDAMFEVFHEMVN-----------AGVEANVHT--FGALIDGCARAG 521

Query: 193 SVAHAYKVF--LKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMF--QHGFSPDGV 248
            VA A+  +  ++ K+ +     +F+ LI    ++   D A   + EM    H   PD +
Sbjct: 522 QVAKAFGAYGIMRSKN-VKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHI 580

Query: 249 SYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKM 308
           +    ++         +     + + E   K +    TI +++  +      AL +Y+ M
Sbjct: 581 TVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDM 640

Query: 309 KSDDCLTDTSFYSSLIFI------LSKAVRFL-------------IYNTMISSACVRSEE 349
           K      D  F+S+L+ +      L KA   L              Y++++ +       
Sbjct: 641 KKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNW 700

Query: 350 GNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTH 409
             AL+L + I+    +P   T    +   C   ++   + VL+   EM   G+ P   T+
Sbjct: 701 KKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLS---EMKRLGLCPNTITY 757

Query: 410 KMLAEELEKK 419
            +L    E+K
Sbjct: 758 SILLVASERK 767

Length = 1060

>gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional

 Score = 46.4 bits (110), Expect = 3e-05
 Identities = 56/295 (18%), Positives = 117/295 (39%), Gaps = 62/295 (21%)

Query: 97  ILRKRYPSPDKVVEALKCFCFTWAKTQTGYMHTPETYNAMVEALGKS----KKFGLMWEL 152
           I+R +   PD+VV                       +NA++ A G+S    + F ++ E+
Sbjct: 532 IMRSKNVKPDRVV-----------------------FNALISACGQSGAVDRAFDVLAEM 568

Query: 153 VKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVF-LKFKDCISLS 211
             E   +   ++++ A               LM        V  A +V+ +  +  I  +
Sbjct: 569 KAETHPIDPDHITVGA---------------LMKACANAGQVDRAKEVYQMIHEYNIKGT 613

Query: 212 SQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLK 271
            +++ + ++   +    D+A     +M + G  PD V ++  ++      D  K    L+
Sbjct: 614 PEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQ 673

Query: 272 EMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAV 331
           + +++G K   ++ + +M A   AK   +AL++YE +KS       S  ++LI  L +  
Sbjct: 674 DARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGN 733

Query: 332 RFL------------------IYNTMISSACVRSEEGN-ALKLRQKIEEDSCKPD 367
           +                    I  +++  A  R ++ +  L L  + +ED  KP+
Sbjct: 734 QLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPN 788

Length = 1060

>gnl|CDD|205109 pfam12854, PPR_1, PPR repeat

 Score = 36.2 bits (85), Expect = 0.001
 Identities = 11/34 (32%), Positives = 23/34 (67%)

Query: 276 KGCKPSVITCTIVMHALEKAKQIYEALKVYEKMK 309
           KG KP V+T   ++  L +A ++ EA+++ ++M+
Sbjct: 1   KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34

This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34

>gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain

 Score = 36.0 bits (84), Expect = 0.001
 Identities = 8/33 (24%), Positives = 13/33 (39%)

Query: 248 VSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKP 280
            +Y   +    +  D       L+EM+  G KP
Sbjct: 2   ETYNALLLALAKAGDPDLALAVLEEMKASGLKP 34

This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34

>gnl|CDD|144943 pfam01535, PPR, PPR repeat

 Score = 34.7 bits (81), Expect = 0.003
 Identities = 11/31 (35%), Positives = 15/31 (48%)

Query: 248 VSYTCFIEHYCREKDFRKVDYTLKEMQEKGC 278
           V+Y   I  YC+     +     KEM+EKG 
Sbjct: 1   VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31

This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	441
PLN03218	1060	maturation of RBCL 1; Provisional	100.0
PLN03218	1060	maturation of RBCL 1; Provisional	100.0
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	100.0
PLN03077	857	Protein ECB2; Provisional	100.0
PLN03077	857	Protein ECB2; Provisional	100.0
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	100.0
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	99.86
PRK11788	389	tetratricopeptide repeat protein; Provisional	99.85
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	99.85
PRK11788	389	tetratricopeptide repeat protein; Provisional	99.83
KOG4422	625	consensus Uncharacterized conserved protein [Funct	99.73
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	99.72
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	99.59
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	99.55
KOG4422	625	consensus Uncharacterized conserved protein [Funct	99.55
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	99.54
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	99.52
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	99.5
PF13041	50	PPR_2: PPR repeat family	99.47
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	99.47
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	99.46
PF13041	50	PPR_2: PPR repeat family	99.46
KOG4318	1088	consensus Bicoid mRNA stability factor [RNA proces	99.45
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	99.38
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	99.36
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	99.35
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	99.35
PRK14574	822	hmsH outer membrane protein; Provisional	99.35
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	99.32
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	99.31
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	99.31
KOG4318	1088	consensus Bicoid mRNA stability factor [RNA proces	99.3
PRK14574	822	hmsH outer membrane protein; Provisional	99.29
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	99.23
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	99.23
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	99.22
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	99.19
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	99.19
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	99.17
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	99.16
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	99.14
KOG1126	638	consensus DNA-binding cell division cycle control	99.13
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	99.09
PRK12370	553	invasion protein regulator; Provisional	99.09
KOG2076	895	consensus RNA polymerase III transcription factor	99.08
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	99.01
PRK12370	553	invasion protein regulator; Provisional	98.99
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	98.98
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	98.97
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	98.91
PF12854	34	PPR_1: PPR repeat	98.89
KOG1126	638	consensus DNA-binding cell division cycle control	98.88
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	98.87
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	98.84
PF12854	34	PPR_1: PPR repeat	98.84
KOG2003	840	consensus TPR repeat-containing protein [General f	98.81
KOG2076	895	consensus RNA polymerase III transcription factor	98.81
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	98.81
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	98.77
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	98.76
KOG1129	478	consensus TPR repeat-containing protein [General f	98.75
KOG2003	840	consensus TPR repeat-containing protein [General f	98.75
PRK11189	296	lipoprotein NlpI; Provisional	98.67
KOG1915	677	consensus Cell cycle control protein (crooked neck	98.67
KOG1129	478	consensus TPR repeat-containing protein [General f	98.66
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	98.64
PRK11189	296	lipoprotein NlpI; Provisional	98.57
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	98.52
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	98.5
KOG1915	677	consensus Cell cycle control protein (crooked neck	98.5
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	98.48
KOG0495	913	consensus HAT repeat protein [RNA processing and m	98.48
KOG0495	913	consensus HAT repeat protein [RNA processing and m	98.47
KOG0547	606	consensus Translocase of outer mitochondrial membr	98.45
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	98.44
TIGR00756	35	PPR pentatricopeptide repeat domain (PPR motif). T	98.43
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	98.39
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	98.38
TIGR00756	35	PPR pentatricopeptide repeat domain (PPR motif). T	98.38
KOG0547	606	consensus Translocase of outer mitochondrial membr	98.36
PF13812	34	PPR_3: Pentatricopeptide repeat domain	98.32
PF13812	34	PPR_3: Pentatricopeptide repeat domain	98.32
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	98.27
KOG0985	1666	consensus Vesicle coat protein clathrin, heavy cha	98.24
KOG4340	459	consensus Uncharacterized conserved protein [Funct	98.23
KOG1125	579	consensus TPR repeat-containing protein [General f	98.2
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	98.15
PF10037	429	MRP-S27: Mitochondrial 28S ribosomal protein S27;	98.14
KOG3785	557	consensus Uncharacterized conserved protein [Funct	98.14
PLN02789	320	farnesyltranstransferase	98.14
PF08579	120	RPM2: Mitochondrial ribonuclease P subunit (RPM2);	98.13
KOG1070	1710	consensus rRNA processing protein Rrp5 [RNA proces	98.13
PRK04841	903	transcriptional regulator MalT; Provisional	98.11
KOG1070	1710	consensus rRNA processing protein Rrp5 [RNA proces	98.11
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	98.1
KOG4340	459	consensus Uncharacterized conserved protein [Funct	98.1
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	98.09
PF08579	120	RPM2: Mitochondrial ribonuclease P subunit (RPM2);	98.08
PF01535	31	PPR: PPR repeat; InterPro: IPR002885 This entry re	98.07
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	98.07
PF01535	31	PPR: PPR repeat; InterPro: IPR002885 This entry re	98.06
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	98.04
KOG1128	777	consensus Uncharacterized conserved protein, conta	98.04
KOG3081	299	consensus Vesicle coat complex COPI, epsilon subun	98.04
PF10037	429	MRP-S27: Mitochondrial 28S ribosomal protein S27;	98.03
PRK14720	906	transcript cleavage factor/unknown domain fusion p	98.02
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	98.02
KOG0985	1666	consensus Vesicle coat protein clathrin, heavy cha	98.01
PF06239	228	ECSIT: Evolutionarily conserved signalling interme	97.95
KOG3616	1636	consensus Selective LIM binding factor [Transcript	97.95
COG4783	484	Putative Zn-dependent protease, contains TPR repea	97.93
KOG3785	557	consensus Uncharacterized conserved protein [Funct	97.93
PLN02789	320	farnesyltranstransferase	97.9
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	97.88
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	97.86
PRK10370	198	formate-dependent nitrite reductase complex subuni	97.85
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	97.83
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	97.83
KOG1128	777	consensus Uncharacterized conserved protein, conta	97.82
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	97.81
PRK04841	903	transcriptional regulator MalT; Provisional	97.8
PF06239	228	ECSIT: Evolutionarily conserved signalling interme	97.79
KOG2047	835	consensus mRNA splicing factor [RNA processing and	97.77
KOG3616	1636	consensus Selective LIM binding factor [Transcript	97.77
COG4783	484	Putative Zn-dependent protease, contains TPR repea	97.77
PRK15359	144	type III secretion system chaperone protein SscB;	97.74
PRK10370	198	formate-dependent nitrite reductase complex subuni	97.73
PRK15359	144	type III secretion system chaperone protein SscB;	97.73
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	97.73
TIGR02552	135	LcrH_SycD type III secretion low calcium response	97.7
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	97.7
KOG2376	652	consensus Signal recognition particle, subunit Srp	97.69
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	97.68
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	97.62
TIGR02552	135	LcrH_SycD type III secretion low calcium response	97.6
PRK14720	906	transcript cleavage factor/unknown domain fusion p	97.57
KOG3081	299	consensus Vesicle coat complex COPI, epsilon subun	97.52
KOG2376	652	consensus Signal recognition particle, subunit Srp	97.48
KOG2053	932	consensus Mitochondrial inheritance and actin cyto	97.46
KOG2047	835	consensus mRNA splicing factor [RNA processing and	97.45
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	97.43
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	97.41
KOG1125	579	consensus TPR repeat-containing protein [General f	97.4
KOG3060	289	consensus Uncharacterized conserved protein [Funct	97.38
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	97.36
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	97.27
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	97.26
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	97.25
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	97.19
KOG1914	656	consensus mRNA cleavage and polyadenylation factor	97.18
KOG2053	932	consensus Mitochondrial inheritance and actin cyto	97.1
KOG3060	289	consensus Uncharacterized conserved protein [Funct	97.06
PF03704	146	BTAD: Bacterial transcriptional activator domain;	97.05
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	97.04
PF12921	126	ATP13: Mitochondrial ATPase expression; InterPro:	97.02
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	97.0
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	96.97
PF03704	146	BTAD: Bacterial transcriptional activator domain;	96.95
PF13170	297	DUF4003: Protein of unknown function (DUF4003)	96.94
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	96.92
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	96.9
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	96.88
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	96.86
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	96.85
KOG1914	656	consensus mRNA cleavage and polyadenylation factor	96.82
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	96.77
KOG3941	406	consensus Intermediate in Toll signal transduction	96.75
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	96.75
PF12921	126	ATP13: Mitochondrial ATPase expression; InterPro:	96.75
PF07079	549	DUF1347: Protein of unknown function (DUF1347); In	96.66
PF07079	549	DUF1347: Protein of unknown function (DUF1347); In	96.64
KOG2041	1189	consensus WD40 repeat protein [General function pr	96.6
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	96.58
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	96.53
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	96.51
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	96.5
PF04840	319	Vps16_C: Vps16, C-terminal region; InterPro: IPR00	96.49
smart00299	140	CLH Clathrin heavy chain repeat homology.	96.35
PF04840	319	Vps16_C: Vps16, C-terminal region; InterPro: IPR00	96.35
KOG3941	406	consensus Intermediate in Toll signal transduction	96.35
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	96.32
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	96.29
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	96.28
KOG2041	1189	consensus WD40 repeat protein [General function pr	96.27
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	96.27
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	96.27
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	96.23
COG3898	531	Uncharacterized membrane-bound protein [Function u	96.17
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	96.16
PF12688	120	TPR_5: Tetratrico peptide repeat	96.11
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	96.1
PF12688	120	TPR_5: Tetratrico peptide repeat	96.0
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	95.93
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	95.93
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	95.88
PF09205	161	DUF1955: Domain of unknown function (DUF1955); Int	95.76
KOG2796	366	consensus Uncharacterized conserved protein [Funct	95.75
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	95.72
PRK10803	263	tol-pal system protein YbgF; Provisional	95.72
PRK10803	263	tol-pal system protein YbgF; Provisional	95.69
COG5107	660	RNA14 Pre-mRNA 3'-end processing (cleavage and pol	95.63
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	95.6
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	95.59
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	95.59
PF09205	161	DUF1955: Domain of unknown function (DUF1955); Int	95.56
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	95.42
KOG0553	304	consensus TPR repeat-containing protein [General f	95.31
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	95.29
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	95.23
KOG2796	366	consensus Uncharacterized conserved protein [Funct	95.13
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	95.04
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	95.03
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	94.87
KOG0553	304	consensus TPR repeat-containing protein [General f	94.56
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	94.48
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	94.41
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	94.39
PF13371	73	TPR_9: Tetratricopeptide repeat	94.34
smart00299	140	CLH Clathrin heavy chain repeat homology.	94.33
PF13170	297	DUF4003: Protein of unknown function (DUF4003)	94.31
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	94.19
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	94.13
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	94.02
PF13371	73	TPR_9: Tetratricopeptide repeat	93.75
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	93.74
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	93.6
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	93.59
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	93.56
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	93.49
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	93.29
PF07035	167	Mic1: Colon cancer-associated protein Mic1-like; I	93.26
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	93.0
PF07035	167	Mic1: Colon cancer-associated protein Mic1-like; I	92.96
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	92.83
COG3629	280	DnrI DNA-binding transcriptional activator of the	92.71
KOG1585	308	consensus Protein required for fusion of vesicles	92.37
COG3629	280	DnrI DNA-binding transcriptional activator of the	92.04
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	91.89
PRK15331	165	chaperone protein SicA; Provisional	91.62
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	91.27
PF13929	292	mRNA_stabil: mRNA stabilisation	91.13
PF13512	142	TPR_18: Tetratricopeptide repeat	91.12
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	90.86
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	90.62
COG1747	711	Uncharacterized N-terminal domain of the transcrip	90.54
PF00637	143	Clathrin: Region in Clathrin and VPS; InterPro: IP	90.53
COG4105	254	ComL DNA uptake lipoprotein [General function pred	90.47
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	90.41
PF13929	292	mRNA_stabil: mRNA stabilisation	90.22
COG4700	251	Uncharacterized protein conserved in bacteria cont	90.0
COG5107	660	RNA14 Pre-mRNA 3'-end processing (cleavage and pol	89.85
KOG2610	491	consensus Uncharacterized conserved protein [Funct	89.82
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	89.81
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	89.59
KOG4570	418	consensus Uncharacterized conserved protein [Funct	89.32
PRK15331	165	chaperone protein SicA; Provisional	89.06
PF00637	143	Clathrin: Region in Clathrin and VPS; InterPro: IP	88.48
PF10366	108	Vps39_1: Vacuolar sorting protein 39 domain 1; Int	88.28
COG4105	254	ComL DNA uptake lipoprotein [General function pred	88.15
PF09613	160	HrpB1_HrpK: Bacterial type III secretion protein (	87.79
KOG4570	418	consensus Uncharacterized conserved protein [Funct	87.33
cd00923	103	Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va.	87.1
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	86.85
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	86.47
PF13428	44	TPR_14: Tetratricopeptide repeat	86.45
KOG1585	308	consensus Protein required for fusion of vesicles	86.21
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	85.98
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	85.81
COG3118	304	Thioredoxin domain-containing protein [Posttransla	85.64
PF13762	145	MNE1: Mitochondrial splicing apparatus component	85.48
PF13428	44	TPR_14: Tetratricopeptide repeat	85.33
PF02284	108	COX5A: Cytochrome c oxidase subunit Va; InterPro:	85.18
KOG4555	175	consensus TPR repeat-containing protein [Function	85.12
PF13762	145	MNE1: Mitochondrial splicing apparatus component	84.75
PF02284	108	COX5A: Cytochrome c oxidase subunit Va; InterPro:	84.51
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	84.3
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	84.15
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	84.06
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	83.33
COG4455	273	ImpE Protein of avirulence locus involved in tempe	83.23
COG4700	251	Uncharacterized protein conserved in bacteria cont	82.56
KOG4555	175	consensus TPR repeat-containing protein [Function	82.46
COG4649	221	Uncharacterized protein conserved in bacteria [Fun	82.16
KOG2610	491	consensus Uncharacterized conserved protein [Funct	82.06
PRK10564	303	maltose regulon periplasmic protein; Provisional	81.89
KOG1130	639	consensus Predicted G-alpha GTPase interaction pro	81.87
PF11207	203	DUF2989: Protein of unknown function (DUF2989); In	81.63
PF11207	203	DUF2989: Protein of unknown function (DUF2989); In	80.77
COG3118	304	Thioredoxin domain-containing protein [Posttransla	80.64

>PLN03218 maturation of RBCL 1; Provisional

Probab=100.00  E-value=9.6e-60  Score=483.76  Aligned_cols=407  Identities=14%  Similarity=0.169  Sum_probs=370.0

Q ss_pred             hhHHHHhhHhHHhhhccCCCcc-----hhhcccchhcccccCccchhccCCCCCCCCcccccchhhHHHhhhhchhhHHH
Q 036107            5 HDIWKLLSQSHLQKHHKINPLG-----CLLCNRHCITNELTGLPSWLKFFDTQSPDEDFVIPSLASWVESLKLNEQSRIS   79 (441)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~n~~i-----~~l~~~~~~~~~a~~l~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~i~   79 (441)
                      +++.++|.+..-.+..++|..+     ..+++.|... +|.+++..+.     .|+..+|+.+|.+|++.++++.|..++
T Consensus       387 ~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~-eAl~lf~~M~-----~pd~~Tyn~LL~a~~k~g~~e~A~~lf  460 (1060)
T PLN03218        387 KDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVK-EAFRFAKLIR-----NPTLSTFNMLMSVCASSQDIDGALRVL  460 (1060)
T ss_pred             HHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHH-HHHHHHHHcC-----CCCHHHHHHHHHHHHhCcCHHHHHHHH
Confidence            4677788777666555555443     3466777777 8887776554     289999999999999999999999999


Q ss_pred             HHhhhcCchhhHHHHHHHHHhcCCChHHHHHHHhhhhhHhhhhcCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHh
Q 036107           80 SHALSEDHETDVDKVSEILRKRYPSPDKVVEALKCFCFTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDEL  159 (441)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~g~~p~~~~y~~li~~~~~~~~~~~a~~l~~~m~~~  159 (441)
                      ..|.+.|+.|+. .+++.|+.+|++.|++++|.++|+.   |...|+.||..+|+++|.+|++.|++++|.++|++|.+.
T Consensus       461 ~~M~~~Gl~pD~-~tynsLI~~y~k~G~vd~A~~vf~e---M~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~  536 (1060)
T PLN03218        461 RLVQEAGLKADC-KLYTTLISTCAKSGKVDAMFEVFHE---MVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSK  536 (1060)
T ss_pred             HHHHHcCCCCCH-HHHHHHHHHHHhCcCHHHHHHHHHH---HHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHc
Confidence            999999999998 8999999999999999999999954   456799999999999999999999999999999999987


Q ss_pred             cCCCccHHHHHHHHhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHhh---hCCCCcHHHHHHHHHHHHhcCCHHHHHHHHH
Q 036107          160 SNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFK---DCISLSSQIFDVLIHGWCKTRKSDYAQKAMK  236 (441)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~  236 (441)
                      + .            .||..+|+.+|.+|++.|++++|.++|++|.   .++.||..+|++||.+|++.|++++|.++|+
T Consensus       537 G-v------------~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~  603 (1060)
T PLN03218        537 N-V------------KPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQ  603 (1060)
T ss_pred             C-C------------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence            7 3            3499999999999999999999999999994   3789999999999999999999999999999


Q ss_pred             HHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC
Q 036107          237 EMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTD  316 (441)
Q Consensus       237 ~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~  316 (441)
                      +|.+.|+.|+..+|+++|.+|++.|++++|.++|++|.+.|+.||..||+++|.+|++.|++++|.++|++|.+.|+.||
T Consensus       604 ~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd  683 (1060)
T PLN03218        604 MIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLG  683 (1060)
T ss_pred             HHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcCcc-------------------chHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 036107          317 TSFYSSLIFILSKAVRF-------------------LIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKM  377 (441)
Q Consensus       317 ~~~~~~li~~~~~~g~~-------------------~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~  377 (441)
                      ..+|+++|.+|+++|++                   .+||+||.+|++.|++++|+++|++|.+.|+.||..||+.+|.+
T Consensus       684 ~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a  763 (1060)
T PLN03218        684 TVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVA  763 (1060)
T ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence            99999999999999987                   89999999999999999999999999999999999999999999


Q ss_pred             HHhcCChhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cC-------------------CccHHHHHHHHHHH
Q 036107          378 CCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEK----KS-------------------LGNAKERIDELLTH  434 (441)
Q Consensus       378 ~~~~g~~~~a~~~~~~~~~m~~~~~~p~~~~~~~ll~~~~~----~g-------------------~~~~a~~~~~~m~~  434 (441)
                      |++.|++++|.+   ++.+|.+.|+.||..+|++|+..|.+    ++                   ..++|..+|++|.+
T Consensus       764 ~~k~G~le~A~~---l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~  840 (1060)
T PLN03218        764 SERKDDADVGLD---LLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETIS  840 (1060)
T ss_pred             HHHCCCHHHHHH---HHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHH
Confidence            999999999976   78888899999999999999876432    11                   23568888988887


Q ss_pred             Hhh
Q 036107          435 ATE  437 (441)
Q Consensus       435 ~~~  437 (441)
                      ..-
T Consensus       841 ~Gi  843 (1060)
T PLN03218        841 AGT  843 (1060)
T ss_pred             CCC
Confidence            553

>PLN03218 maturation of RBCL 1; Provisional

Probab=100.00  E-value=5.2e-59  Score=478.35  Aligned_cols=393  Identities=16%  Similarity=0.214  Sum_probs=369.0

Q ss_pred             hccCCCcchhhcccchhcccccCccchhccCCCCCCCCcccccchhhHHHhhhhchhhHHHHHhhhcCchhhHHHHHHHH
Q 036107           19 HHKINPLGCLLCNRHCITNELTGLPSWLKFFDTQSPDEDFVIPSLASWVESLKLNEQSRISSHALSEDHETDVDKVSEIL   98 (441)
Q Consensus        19 ~~~~n~~i~~l~~~~~~~~~a~~l~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l   98 (441)
                      ...++..+..+++.|++. +|.++|+.|.......|+..++..++..|++.+.++.|..++..|..    |+. .+++.+
T Consensus       370 ~~~~~~~y~~l~r~G~l~-eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~-~Tyn~L  443 (1060)
T PLN03218        370 SPEYIDAYNRLLRDGRIK-DCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTL-STFNML  443 (1060)
T ss_pred             chHHHHHHHHHHHCcCHH-HHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCH-HHHHHH
Confidence            334566777899999999 99999999988766677888888899999999999999999998875    776 899999


Q ss_pred             HhcCCChHHHHHHHhhhhhHhhhhcCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHhcCCCccHHHHHHHHhhcCH
Q 036107           99 RKRYPSPDKVVEALKCFCFTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDT  178 (441)
Q Consensus        99 ~~~~~~~g~~~~A~~~~~~~~~~~~~g~~p~~~~y~~li~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~  178 (441)
                      +..|++.|+++.|+++|+   .+.+.|+.||..+||++|.+|++.|++++|.++|++|.+.| .            .||.
T Consensus       444 L~a~~k~g~~e~A~~lf~---~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~G-v------------~Pdv  507 (1060)
T PLN03218        444 MSVCASSQDIDGALRVLR---LVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAG-V------------EANV  507 (1060)
T ss_pred             HHHHHhCcCHHHHHHHHH---HHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcC-C------------CCCH
Confidence            999999999999999995   45567999999999999999999999999999999999977 3            3499


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHhh-hCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhh--CCCCCCHhhHHHHHH
Q 036107          179 RAMSVLMDTLVKRNSVAHAYKVFLKFK-DCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQ--HGFSPDGVSYTCFIE  255 (441)
Q Consensus       179 ~~~~~li~~~~~~g~~~~a~~~~~~~~-~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~--~g~~p~~~~~~~li~  255 (441)
                      .+|+.+|.+|++.|++++|.++|+.|. .++.||..+|+.||.+|++.|++++|.++|++|..  .|+.||..+|+++|.
T Consensus       508 vTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~  587 (1060)
T PLN03218        508 HTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMK  587 (1060)
T ss_pred             HHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHH
Confidence            999999999999999999999999995 58999999999999999999999999999999986  689999999999999


Q ss_pred             HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCcc--
Q 036107          256 HYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRF--  333 (441)
Q Consensus       256 ~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~--  333 (441)
                      +|++.|++++|.++|++|.+.|++|+..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+++|.+|++.|+.  
T Consensus       588 ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~ee  667 (1060)
T PLN03218        588 ACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDK  667 (1060)
T ss_pred             HHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHH
Confidence            999999999999999999999999999999999999999999999999999999999999999999999999999987  


Q ss_pred             -----------------chHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHH
Q 036107          334 -----------------LIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMRE  396 (441)
Q Consensus       334 -----------------~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~~~~  396 (441)
                                       .+|+++|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.+   ++++
T Consensus       668 A~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAle---lf~e  744 (1060)
T PLN03218        668 AFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALE---VLSE  744 (1060)
T ss_pred             HHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHH---HHHH
Confidence                             89999999999999999999999999999999999999999999999999999966   7888


Q ss_pred             HHHCCCCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHh
Q 036107          397 MLSKGIVPQESTHKMLAEELEKKSLGNAKERIDELLTHAT  436 (441)
Q Consensus       397 m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~  436 (441)
                      |...|+.||..||+.++.+|++.|++++|.++++.|.+..
T Consensus       745 M~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~G  784 (1060)
T PLN03218        745 MKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDG  784 (1060)
T ss_pred             HHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC
Confidence            9999999999999999999999999999999999998754

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=100.00  E-value=6e-59  Score=473.88  Aligned_cols=384  Identities=13%  Similarity=0.095  Sum_probs=363.1

Q ss_pred             cCCCcchhhcccchhcccccCccchhccCCCCCCCCcccccchhhHHHhhhhchhhHHHHHhhhcCchhhHHHHHHHHHh
Q 036107           21 KINPLGCLLCNRHCITNELTGLPSWLKFFDTQSPDEDFVIPSLASWVESLKLNEQSRISSHALSEDHETDVDKVSEILRK  100 (441)
Q Consensus        21 ~~n~~i~~l~~~~~~~~~a~~l~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~  100 (441)
                      .+|..|..+++.|++. +|+++|.++....+..||..+|+.++.+|++.++++.+..+|..|.+.|+.|+. .+++.|+.
T Consensus        89 ~~~~~i~~l~~~g~~~-~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~-~~~n~Li~  166 (697)
T PLN03081         89 SLCSQIEKLVACGRHR-EALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQ-YMMNRVLL  166 (697)
T ss_pred             eHHHHHHHHHcCCCHH-HHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcch-HHHHHHHH
Confidence            5678888899999998 999999999887777899999999999999999999999999999999999997 89999999


Q ss_pred             cCCChHHHHHHHhhhhhHhhhhcCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHhcCCCccHHHHHHHHhhcCHHH
Q 036107          101 RYPSPDKVVEALKCFCFTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRA  180 (441)
Q Consensus       101 ~~~~~g~~~~A~~~~~~~~~~~~~g~~p~~~~y~~li~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~  180 (441)
                      +|.+.|+++.|.++|+.+.       .||..+||++|.+|++.|++++|.++|++|.+.+ .            .+|..+
T Consensus       167 ~y~k~g~~~~A~~lf~~m~-------~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g-~------------~p~~~t  226 (697)
T PLN03081        167 MHVKCGMLIDARRLFDEMP-------ERNLASWGTIIGGLVDAGNYREAFALFREMWEDG-S------------DAEPRT  226 (697)
T ss_pred             HHhcCCCHHHHHHHHhcCC-------CCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhC-C------------CCChhh
Confidence            9999999999999996553       3799999999999999999999999999999877 3            348999


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHh-hhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHh
Q 036107          181 MSVLMDTLVKRNSVAHAYKVFLKF-KDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCR  259 (441)
Q Consensus       181 ~~~li~~~~~~g~~~~a~~~~~~~-~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~  259 (441)
                      |+.++.+|++.|+.+.+.+++..+ +.++.||..+||+||.+|+++|++++|.++|++|..    +|+++||++|.+|++
T Consensus       227 ~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~~~vt~n~li~~y~~  302 (697)
T PLN03081        227 FVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE----KTTVAWNSMLAGYAL  302 (697)
T ss_pred             HHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCC----CChhHHHHHHHHHHh
Confidence            999999999999999999999988 558999999999999999999999999999999975    799999999999999


Q ss_pred             cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCcc------
Q 036107          260 EKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRF------  333 (441)
Q Consensus       260 ~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~------  333 (441)
                      .|++++|.++|++|.+.|+.||..||++++.+|++.|++++|.+++..|.+.|+.||..+|++||++|+++|++      
T Consensus       303 ~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~v  382 (697)
T PLN03081        303 HGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNV  382 (697)
T ss_pred             CCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999987      


Q ss_pred             ---------chHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHH-CCCC
Q 036107          334 ---------LIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLS-KGIV  403 (441)
Q Consensus       334 ---------~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~~~~m~~-~~~~  403 (441)
                               .+||+||.+|++.|+.++|+++|++|.+.|+.||..||+.+|.+|++.|.+++|.+   +|+.|.+ .|+.
T Consensus       383 f~~m~~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~---~f~~m~~~~g~~  459 (697)
T PLN03081        383 FDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWE---IFQSMSENHRIK  459 (697)
T ss_pred             HHhCCCCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHH---HHHHHHHhcCCC
Confidence                     89999999999999999999999999999999999999999999999999999977   6667765 6999


Q ss_pred             CCHHHHHHHHHHHHhcCCccHHHHHHHHHH
Q 036107          404 PQESTHKMLAEELEKKSLGNAKERIDELLT  433 (441)
Q Consensus       404 p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~  433 (441)
                      |+..+|++++++|++.|++++|.++++.|.
T Consensus       460 p~~~~y~~li~~l~r~G~~~eA~~~~~~~~  489 (697)
T PLN03081        460 PRAMHYACMIELLGREGLLDEAYAMIRRAP  489 (697)
T ss_pred             CCccchHhHHHHHHhcCCHHHHHHHHHHCC
Confidence            999999999999999999999999998874

>PLN03077 Protein ECB2; Provisional

Probab=100.00  E-value=8e-59  Score=483.68  Aligned_cols=412  Identities=17%  Similarity=0.170  Sum_probs=367.6

Q ss_pred             hhHHHHhhHhHHhhhccCCCcchhhcccchhcccccCccchhccCCCCCCCCcccccchhhHHHhhhhchhhHHHHHhhh
Q 036107            5 HDIWKLLSQSHLQKHHKINPLGCLLCNRHCITNELTGLPSWLKFFDTQSPDEDFVIPSLASWVESLKLNEQSRISSHALS   84 (441)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~n~~i~~l~~~~~~~~~a~~l~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~i~~~~~~   84 (441)
                      .+++++|.+...++...+|.+|..+++.|++. +|.++|+.|... +..||..||+++|.+|+..+++..+..+|.++.+
T Consensus       138 ~~A~~~f~~m~~~d~~~~n~li~~~~~~g~~~-~A~~~f~~M~~~-g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~  215 (857)
T PLN03077        138 VHAWYVFGKMPERDLFSWNVLVGGYAKAGYFD-EALCLYHRMLWA-GVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVR  215 (857)
T ss_pred             HHHHHHHhcCCCCCeeEHHHHHHHHHhCCCHH-HHHHHHHHHHHc-CCCCChhHHHHHHHHhCCccchhhHHHHHHHHHH
Confidence            46778888888888889999999999999999 999999977654 7889999999999999999999999999999999


Q ss_pred             cCchhhHHHHHHHHHhcCCChHHHHHHHhhhhhHhhhhcCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHhcCCCc
Q 036107           85 EDHETDVDKVSEILRKRYPSPDKVVEALKCFCFTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYV  164 (441)
Q Consensus        85 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~g~~p~~~~y~~li~~~~~~~~~~~a~~l~~~m~~~~~~~~  164 (441)
                      .|+.++. .+++.|+.+|.+.|++++|.++|+.+.       .||..+||++|.+|++.|++++|+++|++|.+.| ..|
T Consensus       216 ~g~~~~~-~~~n~Li~~y~k~g~~~~A~~lf~~m~-------~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g-~~P  286 (857)
T PLN03077        216 FGFELDV-DVVNALITMYVKCGDVVSARLVFDRMP-------RRDCISWNAMISGYFENGECLEGLELFFTMRELS-VDP  286 (857)
T ss_pred             cCCCccc-chHhHHHHHHhcCCCHHHHHHHHhcCC-------CCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcC-CCC
Confidence            9999998 899999999999999999999997554       3689999999999999999999999999999977 778


Q ss_pred             cHHHHHHHHhh-----------------------cCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcHHHHHHHHHH
Q 036107          165 SLAAMSTVMRR-----------------------LDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHG  221 (441)
Q Consensus       165 ~~~~~~~~~~~-----------------------~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~  221 (441)
                      +..++..++..                       +|..+|++||.+|++.|++++|.++|++|..   ||..+||++|.+
T Consensus       287 d~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~---~d~~s~n~li~~  363 (857)
T PLN03077        287 DLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMET---KDAVSWTAMISG  363 (857)
T ss_pred             ChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCC---CCeeeHHHHHHH
Confidence            87777777653                       4889999999999999999999999999964   788899999999


Q ss_pred             HHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 036107          222 WCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEA  301 (441)
Q Consensus       222 ~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a  301 (441)
                      |++.|++++|+++|++|.+.|+.||..||+.+|.+|++.|++++|.++++.|.+.|+.|+..+|++||.+|++.|++++|
T Consensus       364 ~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A  443 (857)
T PLN03077        364 YEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKA  443 (857)
T ss_pred             HHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHH
Confidence            99999999999999999999999999999999999999999999999999999999888888888888888888888888


Q ss_pred             HHHHHHHhhC------------------------------CCCCCHHHHHHHH---------------------------
Q 036107          302 LKVYEKMKSD------------------------------DCLTDTSFYSSLI---------------------------  324 (441)
Q Consensus       302 ~~~~~~m~~~------------------------------g~~~~~~~~~~li---------------------------  324 (441)
                      .++|++|.+.                              ++.||..||+++|                           
T Consensus       444 ~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~  523 (857)
T PLN03077        444 LEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFD  523 (857)
T ss_pred             HHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCcc
Confidence            8777776543                              3456666655544                           


Q ss_pred             --------HHHHhcCcc--------------chHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 036107          325 --------FILSKAVRF--------------LIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKK  382 (441)
Q Consensus       325 --------~~~~~~g~~--------------~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g  382 (441)
                              ++|+++|+.              .+||+||.+|++.|+.++|+++|++|.+.|+.||..||+.+|.+|++.|
T Consensus       524 ~~~~naLi~~y~k~G~~~~A~~~f~~~~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g  603 (857)
T PLN03077        524 GFLPNALLDLYVRCGRMNYAWNQFNSHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSG  603 (857)
T ss_pred             ceechHHHHHHHHcCCHHHHHHHHHhcCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcC
Confidence                    555555543              6799999999999999999999999999999999999999999999999


Q ss_pred             ChhhHHHHHHHHHHHH-HCCCCCCHHHHHHHHHHHHhcCCccHHHHHHHHHH
Q 036107          383 RMKDGMLVLNLMREML-SKGIVPQESTHKMLAEELEKKSLGNAKERIDELLT  433 (441)
Q Consensus       383 ~~~~a~~~~~~~~~m~-~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~  433 (441)
                      ++++|.+   +|++|. +.|+.|+..+|++++++|++.|++++|.+++++|.
T Consensus       604 ~v~ea~~---~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~  652 (857)
T PLN03077        604 MVTQGLE---YFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMP  652 (857)
T ss_pred             hHHHHHH---HHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCC
Confidence            9999966   777787 67999999999999999999999999999999985

>PLN03077 Protein ECB2; Provisional

Probab=100.00  E-value=4e-54  Score=448.45  Aligned_cols=388  Identities=19%  Similarity=0.150  Sum_probs=363.2

Q ss_pred             hhhccCCCcchhhcccchhcccccCccchhccCCCCCCCCcccccchhhHHHhhhhchhhHHHHHhhhcCchhhHHHHHH
Q 036107           17 QKHHKINPLGCLLCNRHCITNELTGLPSWLKFFDTQSPDEDFVIPSLASWVESLKLNEQSRISSHALSEDHETDVDKVSE   96 (441)
Q Consensus        17 ~~~~~~n~~i~~l~~~~~~~~~a~~l~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~   96 (441)
                      .+....|..+..+|+.|++. +|.++++.+.. .+..|+..+|..++.+|.+.+.++.+..+|..+.+.+..+++ .+++
T Consensus        49 ~~~~~~n~~i~~l~~~g~~~-~A~~l~~~m~~-~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~n  125 (857)
T PLN03077         49 SSTHDSNSQLRALCSHGQLE-QALKLLESMQE-LRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGV-RLGN  125 (857)
T ss_pred             cchhhHHHHHHHHHhCCCHH-HHHHHHHHHHh-cCCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCc-hHHH
Confidence            34455789999999999999 99999997765 356789999999999999999999999999999999998887 7999


Q ss_pred             HHHhcCCChHHHHHHHhhhhhHhhhhcCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHhcCCCccHHHHHHHHhhc
Q 036107           97 ILRKRYPSPDKVVEALKCFCFTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRL  176 (441)
Q Consensus        97 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~g~~p~~~~y~~li~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~  176 (441)
                      .++..|++.|+++.|+++|+.|.       .||..+||++|.+|++.|++++|+++|++|...| .            .|
T Consensus       126 ~li~~~~~~g~~~~A~~~f~~m~-------~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g-~------------~P  185 (857)
T PLN03077        126 AMLSMFVRFGELVHAWYVFGKMP-------ERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAG-V------------RP  185 (857)
T ss_pred             HHHHHHHhCCChHHHHHHHhcCC-------CCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcC-C------------CC
Confidence            99999999999999999996554       3799999999999999999999999999999876 3            44


Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHh-hhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHH
Q 036107          177 DTRAMSVLMDTLVKRNSVAHAYKVFLKF-KDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIE  255 (441)
Q Consensus       177 ~~~~~~~li~~~~~~g~~~~a~~~~~~~-~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~  255 (441)
                      |..||++++.+|++.++++.+.+++..+ +.++.||..+||+||.+|++.|++++|.++|++|..    ||.++||++|.
T Consensus       186 d~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~----~d~~s~n~li~  261 (857)
T PLN03077        186 DVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPR----RDCISWNAMIS  261 (857)
T ss_pred             ChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCC----CCcchhHHHHH
Confidence            9999999999999999999999999998 559999999999999999999999999999999975    79999999999


Q ss_pred             HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCcc--
Q 036107          256 HYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRF--  333 (441)
Q Consensus       256 ~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~--  333 (441)
                      +|++.|++++|+++|++|.+.|+.||..||+.+|.+|++.|+++.|.+++..|.+.|+.||..+|+++|.+|+++|++  
T Consensus       262 ~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~  341 (857)
T PLN03077        262 GYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGE  341 (857)
T ss_pred             HHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHH
Confidence            999999999999999999999999999999999999999999999999999999999999999999999999999988  


Q ss_pred             -------------chHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHC
Q 036107          334 -------------LIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSK  400 (441)
Q Consensus       334 -------------~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~~~~m~~~  400 (441)
                                   .+||+||.+|++.|++++|+++|++|.+.|+.||..||+.+|.+|++.|++++|.+   ++..|.+.
T Consensus       342 A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~---l~~~~~~~  418 (857)
T PLN03077        342 AEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVK---LHELAERK  418 (857)
T ss_pred             HHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHH---HHHHHHHh
Confidence                         89999999999999999999999999999999999999999999999999999977   66777889


Q ss_pred             CCCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHH
Q 036107          401 GIVPQESTHKMLAEELEKKSLGNAKERIDELLTH  434 (441)
Q Consensus       401 ~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~  434 (441)
                      |+.|+..+|+.|+++|++.|++++|.++|+.|.+
T Consensus       419 g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~  452 (857)
T PLN03077        419 GLISYVVVANALIEMYSKCKCIDKALEVFHNIPE  452 (857)
T ss_pred             CCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCC
Confidence            9999999999999999999999999999999864

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=100.00  E-value=1.2e-53  Score=435.10  Aligned_cols=381  Identities=15%  Similarity=0.129  Sum_probs=274.1

Q ss_pred             hhHHHHhhHhHHhhhccCCCcchhhcccchhcccccCccchhccCCCCCCCCcccccchhhHHHhhhhchhhHHHHHhhh
Q 036107            5 HDIWKLLSQSHLQKHHKINPLGCLLCNRHCITNELTGLPSWLKFFDTQSPDEDFVIPSLASWVESLKLNEQSRISSHALS   84 (441)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~n~~i~~l~~~~~~~~~a~~l~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~i~~~~~~   84 (441)
                      +++.++|.+..-++...+|.+|..+++.|++. +|.++|+.|.. .+..|+..||+.++.+|++.+....++.+|..+.+
T Consensus       175 ~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~-~A~~lf~~M~~-~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~  252 (697)
T PLN03081        175 IDARRLFDEMPERNLASWGTIIGGLVDAGNYR-EAFALFREMWE-DGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLK  252 (697)
T ss_pred             HHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHH-HHHHHHHHHHH-hCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHH
Confidence            34555666555555666666666677666666 66666665543 34556666677777777666666666777776666


Q ss_pred             cCchhhHHHHHHHHHhcCCChHHHHHHHhhhhhHhhhhcCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHhcCCCc
Q 036107           85 EDHETDVDKVSEILRKRYPSPDKVVEALKCFCFTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYV  164 (441)
Q Consensus        85 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~g~~p~~~~y~~li~~~~~~~~~~~a~~l~~~m~~~~~~~~  164 (441)
                      .|+.++. .+++.|+.+|.++|++++|.++|+.+.       .+|..+||++|.+|++.|++++|.++|++|.+.| .  
T Consensus       253 ~g~~~d~-~~~n~Li~~y~k~g~~~~A~~vf~~m~-------~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g-~--  321 (697)
T PLN03081        253 TGVVGDT-FVSCALIDMYSKCGDIEDARCVFDGMP-------EKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSG-V--  321 (697)
T ss_pred             hCCCccc-eeHHHHHHHHHHCCCHHHHHHHHHhCC-------CCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcC-C--
Confidence            6666665 666667777777777777777765432       2466677777777777777777777777776655 2  


Q ss_pred             cHHHHHHHHhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHh-hhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCC
Q 036107          165 SLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKF-KDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGF  243 (441)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~-~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~  243 (441)
                                .||..||++++.+|++.|++++|.+++..| +.++.||..+||+||.+|+++|++++|.++|++|.+   
T Consensus       322 ----------~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~---  388 (697)
T PLN03081        322 ----------SIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR---  388 (697)
T ss_pred             ----------CCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC---
Confidence                      236667777777777777777777777666 346667777777777777777777777777776653   


Q ss_pred             CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhh-CCCCCCHHHHHH
Q 036107          244 SPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKS-DDCLTDTSFYSS  322 (441)
Q Consensus       244 ~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~-~g~~~~~~~~~~  322 (441)
                       ||..+||+||.+|++.|+.++|.++|++|.+.|+.||..||+++|.+|++.|++++|.++|+.|.+ .|+.|+..+   
T Consensus       389 -~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~---  464 (697)
T PLN03081        389 -KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMH---  464 (697)
T ss_pred             -CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccc---
Confidence             566677777777777777777777777777777777777777777777777777777777777754 466676654   


Q ss_pred             HHHHHHhcCccchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCC
Q 036107          323 LIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGI  402 (441)
Q Consensus       323 li~~~~~~g~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~~~~m~~~~~  402 (441)
                                   |+.||.+|++.|++++|.+++++|   ++.|+..+|++|+.+|+..|+++.|.++   ++++.  ++
T Consensus       465 -------------y~~li~~l~r~G~~~eA~~~~~~~---~~~p~~~~~~~Ll~a~~~~g~~~~a~~~---~~~l~--~~  523 (697)
T PLN03081        465 -------------YACMIELLGREGLLDEAYAMIRRA---PFKPTVNMWAALLTACRIHKNLELGRLA---AEKLY--GM  523 (697)
T ss_pred             -------------hHhHHHHHHhcCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCCcHHHHHH---HHHHh--CC
Confidence                         888888888899999999998876   6899999999999999999999999884   44443  45


Q ss_pred             CCC-HHHHHHHHHHHHhcCCccHHHHHHHHHHHHh
Q 036107          403 VPQ-ESTHKMLAEELEKKSLGNAKERIDELLTHAT  436 (441)
Q Consensus       403 ~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~  436 (441)
                      .|+ ..+|..|++.|++.|++++|.++++.|++..
T Consensus       524 ~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g  558 (697)
T PLN03081        524 GPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKG  558 (697)
T ss_pred             CCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcC
Confidence            564 6799999999999999999999999998765

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=99.86  E-value=1.1e-18  Score=184.66  Aligned_cols=281  Identities=14%  Similarity=0.092  Sum_probs=161.7

Q ss_pred             CHHHHHHHHHHHHcCCChhHHHHHHHHHHHhcCCCccHHHHHHHHhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCC
Q 036107          129 TPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCI  208 (441)
Q Consensus       129 ~~~~y~~li~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~  208 (441)
                      +...|..+..++.+.|++++|.+.|+++.+..+.              +...+..+...+.+.|++++|...|+++....
T Consensus       600 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~--------------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~  665 (899)
T TIGR02917       600 SPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPD--------------SALALLLLADAYAVMKNYAKAITSLKRALELK  665 (899)
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--------------ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence            3444555555555555555555555554443211              34445555555555555555555555554333


Q ss_pred             CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 036107          209 SLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIV  288 (441)
Q Consensus       209 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~l  288 (441)
                      +.+...+..+...+...|++++|.++++.+.+.+ +.+...+..+...+.+.|++++|.+.|+++.+.+  |+..++..+
T Consensus       666 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~l  742 (899)
T TIGR02917       666 PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRA--PSSQNAIKL  742 (899)
T ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCchHHHHH
Confidence            4445555555555555555555555555555443 2344455555555556666666666666555543  233445555


Q ss_pred             HHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCcc------------------chHHHHHHHHHhcCChh
Q 036107          289 MHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRF------------------LIYNTMISSACVRSEEG  350 (441)
Q Consensus       289 l~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~------------------~~~~~li~~~~~~g~~~  350 (441)
                      ..++.+.|++++|.+.++.+.+.. +.+...+..+...|.+.|+.                  .+++.+...+...|+ .
T Consensus       743 ~~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~  820 (899)
T TIGR02917       743 HRALLASGNTAEAVKTLEAWLKTH-PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-P  820 (899)
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-H
Confidence            555666666666666666555532 23445555555555555555                  445566666666666 5


Q ss_pred             HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCccHHHHHHH
Q 036107          351 NALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEKKSLGNAKERIDE  430 (441)
Q Consensus       351 ~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~  430 (441)
                      +|+..+++..+.. .-+..++..+...+...|++++|.+   .++++.+.+.. +..++..+..++.+.|+.++|.++++
T Consensus       821 ~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~---~~~~a~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~  895 (899)
T TIGR02917       821 RALEYAEKALKLA-PNIPAILDTLGWLLVEKGEADRALP---LLRKAVNIAPE-AAAIRYHLALALLATGRKAEARKELD  895 (899)
T ss_pred             HHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHH---HHHHHHhhCCC-ChHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            6666666665432 1223345556666777788888755   56666655433 77888888888888888888888888


Q ss_pred             HHH
Q 036107          431 LLT  433 (441)
Q Consensus       431 ~m~  433 (441)
                      .|.
T Consensus       896 ~~~  898 (899)
T TIGR02917       896 KLL  898 (899)
T ss_pred             HHh
Confidence            774

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=99.85  E-value=5.6e-18  Score=162.12  Aligned_cols=297  Identities=11%  Similarity=0.065  Sum_probs=235.4

Q ss_pred             cCCChHHHHHHHhhhhhHhhhhcCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHhcCCCccHHHHHHHHhhcCHHH
Q 036107          101 RYPSPDKVVEALKCFCFTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRA  180 (441)
Q Consensus       101 ~~~~~g~~~~A~~~~~~~~~~~~~g~~p~~~~y~~li~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~  180 (441)
                      .+...|+.+.|++.|..+...    ...+..+|..+...+...|++++|.++++.+...+ .....         ....+
T Consensus        44 ~~~~~~~~~~A~~~~~~al~~----~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~-~~~~~---------~~~~~  109 (389)
T PRK11788         44 NFLLNEQPDKAIDLFIEMLKV----DPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRP-DLTRE---------QRLLA  109 (389)
T ss_pred             HHHhcCChHHHHHHHHHHHhc----CcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCC-CCCHH---------HHHHH
Confidence            345667888999999644332    12245689999999999999999999999988743 21110         02357


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC----HhhHHHHHHH
Q 036107          181 MSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPD----GVSYTCFIEH  256 (441)
Q Consensus       181 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~----~~~~~~li~~  256 (441)
                      +..+...|.+.|++++|..+|+++.+..+.+..+++.++..+.+.|++++|.+.++.+.+.+..++    ...|..+...
T Consensus       110 ~~~La~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~  189 (389)
T PRK11788        110 LQELGQDYLKAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQ  189 (389)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHH
Confidence            888999999999999999999999665566788899999999999999999999999987653332    1245667778


Q ss_pred             HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCccchH
Q 036107          257 YCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIY  336 (441)
Q Consensus       257 ~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~  336 (441)
                      +.+.|++++|...|+++.+.. +.+...+..+...+.+.|++++|.++|+++.+.+.....                .++
T Consensus       190 ~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~----------------~~~  252 (389)
T PRK11788        190 ALARGDLDAARALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLS----------------EVL  252 (389)
T ss_pred             HHhCCCHHHHHHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHH----------------HHH
Confidence            889999999999999998764 234667888889999999999999999999875322112                237


Q ss_pred             HHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 036107          337 NTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEEL  416 (441)
Q Consensus       337 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~~~~m~~~~~~p~~~~~~~ll~~~  416 (441)
                      +.++.+|...|++++|...++++.+.  .|+...+..+...+.+.|++++|..   .+.++.+  ..|+..++..++..+
T Consensus       253 ~~l~~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~la~~~~~~g~~~~A~~---~l~~~l~--~~P~~~~~~~l~~~~  325 (389)
T PRK11788        253 PKLMECYQALGDEAEGLEFLRRALEE--YPGADLLLALAQLLEEQEGPEAAQA---LLREQLR--RHPSLRGFHRLLDYH  325 (389)
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHh--CCCchHHHHHHHHHHHhCCHHHHHH---HHHHHHH--hCcCHHHHHHHHHHh
Confidence            88888999999999999999999875  5777777889999999999999977   5555443  369999999999887


Q ss_pred             Hh---cCCccHHHHHHHHHHHH
Q 036107          417 EK---KSLGNAKERIDELLTHA  435 (441)
Q Consensus       417 ~~---~g~~~~a~~~~~~m~~~  435 (441)
                      ..   .|+.+++..+++.|.+.
T Consensus       326 ~~~~~~g~~~~a~~~~~~~~~~  347 (389)
T PRK11788        326 LAEAEEGRAKESLLLLRDLVGE  347 (389)
T ss_pred             hhccCCccchhHHHHHHHHHHH
Confidence            75   55899999999988763

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=99.85  E-value=5.6e-18  Score=179.37  Aligned_cols=389  Identities=11%  Similarity=-0.003  Sum_probs=239.5

Q ss_pred             hcccchhcccccCccchhccCCCCCCC-CcccccchhhHHHhhhhchhhHHHHHhhhcCchhhHHHHHHHHHhcCCChHH
Q 036107           29 LCNRHCITNELTGLPSWLKFFDTQSPD-EDFVIPSLASWVESLKLNEQSRISSHALSEDHETDVDKVSEILRKRYPSPDK  107 (441)
Q Consensus        29 l~~~~~~~~~a~~l~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~g~  107 (441)
                      +.+.|++. +|.+.+......   .|+ ...+..+...+...++.+.+...+..+.+......  .....++..+.+.|+
T Consensus       373 ~~~~g~~~-~A~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~--~~~~~l~~~~~~~~~  446 (899)
T TIGR02917       373 YLALGDFE-KAAEYLAKATEL---DPENAAARTQLGISKLSQGDPSEAIADLETAAQLDPELG--RADLLLILSYLRSGQ  446 (899)
T ss_pred             HHHCCCHH-HHHHHHHHHHhc---CCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCcch--hhHHHHHHHHHhcCC
Confidence            44555555 555555532222   222 12223333333445556666666655554432211  233344455666666


Q ss_pred             HHHHHhhhhhHhhhhcCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHhcCCCccHHHH------------------
Q 036107          108 VVEALKCFCFTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAM------------------  169 (441)
Q Consensus       108 ~~~A~~~~~~~~~~~~~g~~p~~~~y~~li~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~------------------  169 (441)
                      .++|+++++....    ...++..+|+.+...+...|++++|.+.|+++.+..+..+.....                  
T Consensus       447 ~~~A~~~~~~~~~----~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~  522 (899)
T TIGR02917       447 FDKALAAAKKLEK----KQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRF  522 (899)
T ss_pred             HHHHHHHHHHHHH----hCCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHCCCHHHHHHHH
Confidence            7777666643221    233456677777777777777777777777776644222110000                  


Q ss_pred             HHHH--hhcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCH
Q 036107          170 STVM--RRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDG  247 (441)
Q Consensus       170 ~~~~--~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~  247 (441)
                      ..++  ...+..++..+...+.+.|+.++|..+++++....+.+...+..+...|.+.|++++|.++++++.+. .+.+.
T Consensus       523 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~  601 (899)
T TIGR02917       523 EKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADA-APDSP  601 (899)
T ss_pred             HHHHHhCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHc-CCCCH
Confidence            0000  00144566666666666777777777776664444455556666777777777777777777777653 23456


Q ss_pred             hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHH
Q 036107          248 VSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFIL  327 (441)
Q Consensus       248 ~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~  327 (441)
                      .+|..+...+.+.|++++|...|+++.+.. +.+...+..+..++.+.|++++|..+|+.+.+.. +.+..++..+...+
T Consensus       602 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~  679 (899)
T TIGR02917       602 EAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLL  679 (899)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence            677777777777777777777777776643 2355667777777777777777777777776643 33456667777777


Q ss_pred             HhcCcc------------------chHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHH
Q 036107          328 SKAVRF------------------LIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGML  389 (441)
Q Consensus       328 ~~~g~~------------------~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~  389 (441)
                      .+.|+.                  ..+..+...+...|++++|++.|+++...  .|+..++..+...+.+.|++++|.+
T Consensus       680 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~  757 (899)
T TIGR02917       680 LAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKR--APSSQNAIKLHRALLASGNTAEAVK  757 (899)
T ss_pred             HHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHCCCHHHHHH
Confidence            777665                  45566667777788888888888887765  3555667777788888888888766


Q ss_pred             HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHh
Q 036107          390 VLNLMREMLSKGIVPQESTHKMLAEELEKKSLGNAKERIDELLTHAT  436 (441)
Q Consensus       390 ~~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~  436 (441)
                         .+.++.+. .+.+...+..+...|.+.|++++|.+.++.+....
T Consensus       758 ---~~~~~l~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~  800 (899)
T TIGR02917       758 ---TLEAWLKT-HPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKA  800 (899)
T ss_pred             ---HHHHHHHh-CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC
Confidence               44444332 34466778888888888888888888888876554

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=99.83  E-value=5.4e-18  Score=162.25  Aligned_cols=300  Identities=11%  Similarity=0.080  Sum_probs=236.6

Q ss_pred             HHHhhhhchhhHHHHHhhhcCchhhHHHHHHHHHhcCCChHHHHHHHhhhhhHhhhhcCCCCC--CHHHHHHHHHHHHcC
Q 036107           66 WVESLKLNEQSRISSHALSEDHETDVDKVSEILRKRYPSPDKVVEALKCFCFTWAKTQTGYMH--TPETYNAMVEALGKS  143 (441)
Q Consensus        66 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~g~~p--~~~~y~~li~~~~~~  143 (441)
                      ....++.+.|...+..+.+..  |+...++..+...+.+.|++++|+..++.+...  ....+  ....|..+...|.+.
T Consensus        45 ~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~--~~~~~~~~~~~~~~La~~~~~~  120 (389)
T PRK11788         45 FLLNEQPDKAIDLFIEMLKVD--PETVELHLALGNLFRRRGEVDRAIRIHQNLLSR--PDLTREQRLLALQELGQDYLKA  120 (389)
T ss_pred             HHhcCChHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcC--CCCCHHHHHHHHHHHHHHHHHC
Confidence            345577888999999998864  333357777888899999999999998644321  11111  135788999999999


Q ss_pred             CChhHHHHHHHHHHHhcCCCccHHHHHHHHhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCc-----HHHHHHH
Q 036107          144 KKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLS-----SQIFDVL  218 (441)
Q Consensus       144 ~~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~-----~~~~~~l  218 (441)
                      |+++.|..+|+++.+..+              .+..++..+...+.+.|++++|.+.++.+....+.+     ...+..+
T Consensus       121 g~~~~A~~~~~~~l~~~~--------------~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l  186 (389)
T PRK11788        121 GLLDRAEELFLQLVDEGD--------------FAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCEL  186 (389)
T ss_pred             CCHHHHHHHHHHHHcCCc--------------chHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHH
Confidence            999999999999987431              167789999999999999999999999984422111     2245667


Q ss_pred             HHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH
Q 036107          219 IHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQI  298 (441)
Q Consensus       219 i~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~  298 (441)
                      ...+.+.|++++|.+.|+++.+.. +.+...+..+...+.+.|++++|.++|+++.+.+......+++.+..+|.+.|++
T Consensus       187 a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~  265 (389)
T PRK11788        187 AQQALARGDLDAARALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDE  265 (389)
T ss_pred             HHHHHhCCCHHHHHHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCH
Confidence            788899999999999999998753 2345678888899999999999999999998764333356788999999999999


Q ss_pred             HHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCccchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 036107          299 YEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMC  378 (441)
Q Consensus       299 ~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~  378 (441)
                      ++|...++.+.+..  |+...                ++.+...+.+.|++++|..+++++.+.  .|+..++..++..+
T Consensus       266 ~~A~~~l~~~~~~~--p~~~~----------------~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~  325 (389)
T PRK11788        266 AEGLEFLRRALEEY--PGADL----------------LLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYH  325 (389)
T ss_pred             HHHHHHHHHHHHhC--CCchH----------------HHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHh
Confidence            99999999998864  45433                677888889999999999999998865  79999999999887


Q ss_pred             Hh---cCChhhHHHHHHHHHHHHHCCCCCCHH
Q 036107          379 CH---KKRMKDGMLVLNLMREMLSKGIVPQES  407 (441)
Q Consensus       379 ~~---~g~~~~a~~~~~~~~~m~~~~~~p~~~  407 (441)
                      ..   .|+.+++   +..+++|.++++.|++.
T Consensus       326 ~~~~~~g~~~~a---~~~~~~~~~~~~~~~p~  354 (389)
T PRK11788        326 LAEAEEGRAKES---LLLLRDLVGEQLKRKPR  354 (389)
T ss_pred             hhccCCccchhH---HHHHHHHHHHHHhCCCC
Confidence            75   4477777   44788888878777765

>KOG4422 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.73  E-value=1.2e-14  Score=129.95  Aligned_cols=252  Identities=15%  Similarity=0.185  Sum_probs=181.5

Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHhhh-CCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHH
Q 036107          177 DTRAMSVLMDTLVKRNSVAHAYKVFLKFKD-CISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIE  255 (441)
Q Consensus       177 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~  255 (441)
                      +..+|.++|.++|+-...|.|.+++.+.+. ..+.+..+||.+|.+-+-..+    .++..+|.+..+.||..|+|++++
T Consensus       206 T~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~----K~Lv~EMisqkm~Pnl~TfNalL~  281 (625)
T KOG4422|consen  206 TDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVG----KKLVAEMISQKMTPNLFTFNALLS  281 (625)
T ss_pred             CchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhcc----HHHHHHHHHhhcCCchHhHHHHHH
Confidence            788999999999999999999999998844 678899999999876554333    788999999999999999999999


Q ss_pred             HHHhcCCHHH----HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH-HHHHHHHH----hhCCCCC----CHHHHHH
Q 036107          256 HYCREKDFRK----VDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYE-ALKVYEKM----KSDDCLT----DTSFYSS  322 (441)
Q Consensus       256 ~~~~~g~~~~----a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~-a~~~~~~m----~~~g~~~----~~~~~~~  322 (441)
                      +.++.|+++.    |.+++.+|++-|+.|...+|..+|.-+++.++..+ +..+..++    ..+.++|    |...|..
T Consensus       282 c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~  361 (625)
T KOG4422|consen  282 CAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQS  361 (625)
T ss_pred             HHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHHH
Confidence            9999998764    57788899999999999999999999999888855 33333333    2233333    3445566


Q ss_pred             HHHHHHhcCcc--------------------------chHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 036107          323 LIFILSKAVRF--------------------------LIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLK  376 (441)
Q Consensus       323 li~~~~~~g~~--------------------------~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~  376 (441)
                      .|+.|.+..+.                          .-|..+....|+....+.-+..|+.|.-.-.-|+..+...+++
T Consensus       362 AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lr  441 (625)
T KOG4422|consen  362 AMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLR  441 (625)
T ss_pred             HHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHH
Confidence            66666655544                          2333455555666666666666666666556677777777777


Q ss_pred             HHHhcCChhhHHHHHH-----------------------------------------------------HHHHHHHCCCC
Q 036107          377 MCCHKKRMKDGMLVLN-----------------------------------------------------LMREMLSKGIV  403 (441)
Q Consensus       377 ~~~~~g~~~~a~~~~~-----------------------------------------------------~~~~m~~~~~~  403 (441)
                      +..-.|.++-..++|.                                                     .-.+|..  ..
T Consensus       442 A~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r~--~~  519 (625)
T KOG4422|consen  442 ALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYESQPIRQRA--QD  519 (625)
T ss_pred             HHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHh--cc
Confidence            6666666665555544                                                     1122222  22


Q ss_pred             CCHHHHHHHHHHHHhcCCccHHHHHHHHHHH
Q 036107          404 PQESTHKMLAEELEKKSLGNAKERIDELLTH  434 (441)
Q Consensus       404 p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~  434 (441)
                      .+....+...-.+.|.|..++|.+++..+.+
T Consensus       520 ~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~  550 (625)
T KOG4422|consen  520 WPATSLNCIAILLLRAGRTQKAWEMLGLFLR  550 (625)
T ss_pred             CChhHHHHHHHHHHHcchHHHHHHHHHHHHh
Confidence            3344566677778999999999999998853

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=99.72  E-value=8.4e-14  Score=140.59  Aligned_cols=371  Identities=13%  Similarity=0.071  Sum_probs=266.7

Q ss_pred             hhHHHHhhHhHHhhhccCCCcchhhcccchhcccccCccchhccCCCCCCCCcccccchhhHHHhhhhchhhHHHHHhhh
Q 036107            5 HDIWKLLSQSHLQKHHKINPLGCLLCNRHCITNELTGLPSWLKFFDTQSPDEDFVIPSLASWVESLKLNEQSRISSHALS   84 (441)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~n~~i~~l~~~~~~~~~a~~l~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~i~~~~~~   84 (441)
                      |..+|.+++-|+-+..++.-+ |.+-++.-         +..+..   .-+.....-++..+.+.|+++.|..++..++.
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~---------~~~~~~---~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~   70 (656)
T PRK15174          4 HSTFKKISPTTLLKQEDWEGL-CLYFSQHP---------EKVRDS---AGNEQNIILFAIACLRKDETDVGLTLLSDRVL   70 (656)
T ss_pred             hhhhhccCchhhhhhhchhhH-hHHhhccc---------Hhhhhh---cccccCHHHHHHHHHhcCCcchhHHHhHHHHH
Confidence            566777777666555444332 33322211         111111   11344556677888899999999999998887


Q ss_pred             cCchhhHHHHHHHHHhcCCChHHHHHHHhhhhhHhhhhcCCCCC-CHHHHHHHHHHHHcCCChhHHHHHHHHHHHhcCCC
Q 036107           85 EDHETDVDKVSEILRKRYPSPDKVVEALKCFCFTWAKTQTGYMH-TPETYNAMVEALGKSKKFGLMWELVKEIDELSNGY  163 (441)
Q Consensus        85 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~g~~p-~~~~y~~li~~~~~~~~~~~a~~l~~~m~~~~~~~  163 (441)
                      ......  .+...+.......|+.+.|++.|+....     ..| +...|..+...+...|++++|.+.+++.....+. 
T Consensus        71 ~~p~~~--~~l~~l~~~~l~~g~~~~A~~~l~~~l~-----~~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~-  142 (656)
T PRK15174         71 TAKNGR--DLLRRWVISPLASSQPDAVLQVVNKLLA-----VNVCQPEDVLLVASVLLKSKQYATVADLAEQAWLAFSG-  142 (656)
T ss_pred             hCCCch--hHHHHHhhhHhhcCCHHHHHHHHHHHHH-----hCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-
Confidence            765554  2344444566679999999999964332     234 4667888889999999999999999999885422 


Q ss_pred             ccHHHHHHHHhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCC
Q 036107          164 VSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGF  243 (441)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~  243 (441)
                                   +...+..+...+...|++++|...+..+....+.+...+..+ ..+...|++++|..+++.+.+...
T Consensus       143 -------------~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~  208 (656)
T PRK15174        143 -------------NSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGDMIATC-LSFLNKSRLPEDHDLARALLPFFA  208 (656)
T ss_pred             -------------cHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCC
Confidence                         667888899999999999999999988743333334444343 347889999999999999877543


Q ss_pred             CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH----HHHHHHHHhhCCCCCCHHH
Q 036107          244 SPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYE----ALKVYEKMKSDDCLTDTSF  319 (441)
Q Consensus       244 ~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~----a~~~~~~m~~~g~~~~~~~  319 (441)
                      .++...+..+...+.+.|++++|...+++..+.. +.+...+..+-..+...|++++    |...|++..+.  .|+.. 
T Consensus       209 ~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l--~P~~~-  284 (656)
T PRK15174        209 LERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQF--NSDNV-  284 (656)
T ss_pred             CcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhh--CCCCH-
Confidence            3445556666778899999999999999998764 3367788889999999999986    79999988875  34432 


Q ss_pred             HHHHHHHHHhcCccchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCChhhHHHHHHHHHHHH
Q 036107          320 YSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPD-CETHARSLKMCCHKKRMKDGMLVLNLMREML  398 (441)
Q Consensus       320 ~~~li~~~~~~g~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~t~~~li~~~~~~g~~~~a~~~~~~~~~m~  398 (441)
                                    ..+..+...+...|++++|+..+++..+.  .|+ ...+..+...+.+.|++++|.+.   +.++.
T Consensus       285 --------------~a~~~lg~~l~~~g~~~eA~~~l~~al~l--~P~~~~a~~~La~~l~~~G~~~eA~~~---l~~al  345 (656)
T PRK15174        285 --------------RIVTLYADALIRTGQNEKAIPLLQQSLAT--HPDLPYVRAMYARALRQVGQYTAASDE---FVQLA  345 (656)
T ss_pred             --------------HHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHH---HHHHH
Confidence                          23777888888899999999999998765  444 34566677888899999999774   44544


Q ss_pred             HCCCCCCHHH-HHHHHHHHHhcCCccHHHHHHHHHHHH
Q 036107          399 SKGIVPQEST-HKMLAEELEKKSLGNAKERIDELLTHA  435 (441)
Q Consensus       399 ~~~~~p~~~~-~~~ll~~~~~~g~~~~a~~~~~~m~~~  435 (441)
                      ..  .|+... +..+..++...|+.++|.+.++...+.
T Consensus       346 ~~--~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~  381 (656)
T PRK15174        346 RE--KGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQA  381 (656)
T ss_pred             Hh--CccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence            32  454433 333456788999999999999886554

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=99.59  E-value=6.5e-12  Score=127.00  Aligned_cols=294  Identities=11%  Similarity=0.004  Sum_probs=224.8

Q ss_pred             HhcCCChHHHHHHHhhhhhHhhhhcCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHhcCCCccHHHHHHHHhhcCH
Q 036107           99 RKRYPSPDKVVEALKCFCFTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDT  178 (441)
Q Consensus        99 ~~~~~~~g~~~~A~~~~~~~~~~~~~g~~p~~~~y~~li~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~  178 (441)
                      +....+.|++++|+.+++.....    ..-+...+..+..+....|++++|.+.++++....|.              +.
T Consensus        49 ~~~~~~~g~~~~A~~l~~~~l~~----~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~--------------~~  110 (656)
T PRK15174         49 AIACLRKDETDVGLTLLSDRVLT----AKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVC--------------QP  110 (656)
T ss_pred             HHHHHhcCCcchhHHHhHHHHHh----CCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCC--------------Ch
Confidence            34556778888998888533222    1123455666667777899999999999999986533              56


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHH
Q 036107          179 RAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYC  258 (441)
Q Consensus       179 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~  258 (441)
                      ..+..+...+.+.|++++|...+++.-...+.+...+..+...+...|++++|...++.+...... +...+..+ ..+.
T Consensus       111 ~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~-~~~a~~~~-~~l~  188 (656)
T PRK15174        111 EDVLLVASVLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPP-RGDMIATC-LSFL  188 (656)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCC-CHHHHHHH-HHHH
Confidence            778888899999999999999999985544567778899999999999999999999988764322 22333333 4478


Q ss_pred             hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCccchHHH
Q 036107          259 REKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNT  338 (441)
Q Consensus       259 ~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~~~  338 (441)
                      ..|++++|...++.+.+....++...+..+..++.+.|++++|...++...+..  |+..               ..+..
T Consensus       189 ~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~--p~~~---------------~~~~~  251 (656)
T PRK15174        189 NKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG--LDGA---------------ALRRS  251 (656)
T ss_pred             HcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCCH---------------HHHHH
Confidence            899999999999998776544455566667788999999999999999998764  3322               22677


Q ss_pred             HHHHHHhcCChhH----HHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCCC-CHHHHHHH
Q 036107          339 MISSACVRSEEGN----ALKLRQKIEEDSCKPD-CETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVP-QESTHKML  412 (441)
Q Consensus       339 li~~~~~~g~~~~----a~~~~~~m~~~g~~p~-~~t~~~li~~~~~~g~~~~a~~~~~~~~~m~~~~~~p-~~~~~~~l  412 (441)
                      +-..|...|+.++    |+..|++..+.  .|+ ...+..+...+.+.|++++|...   +++....  .| +...+..+
T Consensus       252 Lg~~l~~~G~~~eA~~~A~~~~~~Al~l--~P~~~~a~~~lg~~l~~~g~~~eA~~~---l~~al~l--~P~~~~a~~~L  324 (656)
T PRK15174        252 LGLAYYQSGRSREAKLQAAEHWRHALQF--NSDNVRIVTLYADALIRTGQNEKAIPL---LQQSLAT--HPDLPYVRAMY  324 (656)
T ss_pred             HHHHHHHcCCchhhHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHCCCHHHHHHH---HHHHHHh--CCCCHHHHHHH
Confidence            7788888888885    89999998864  454 55788888999999999999774   4444332  34 35567778


Q ss_pred             HHHHHhcCCccHHHHHHHHHHHHh
Q 036107          413 AEELEKKSLGNAKERIDELLTHAT  436 (441)
Q Consensus       413 l~~~~~~g~~~~a~~~~~~m~~~~  436 (441)
                      ...+.+.|++++|.+.++.+....
T Consensus       325 a~~l~~~G~~~eA~~~l~~al~~~  348 (656)
T PRK15174        325 ARALRQVGQYTAASDEFVQLAREK  348 (656)
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHhC
Confidence            889999999999999998876543

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=99.55  E-value=2e-11  Score=123.60  Aligned_cols=368  Identities=11%  Similarity=0.025  Sum_probs=238.1

Q ss_pred             hcccchhcccccCccchhccCCCCCCCCcccccchhhHHHhhhhchhhHHHHHhhhcCchhhHHHHHHHHHhcCCChHHH
Q 036107           29 LCNRHCITNELTGLPSWLKFFDTQSPDEDFVIPSLASWVESLKLNEQSRISSHALSEDHETDVDKVSEILRKRYPSPDKV  108 (441)
Q Consensus        29 l~~~~~~~~~a~~l~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~  108 (441)
                      +-+.|++. +|.+.+.-.   ....|+...|..+-.++...++++.+...+....+..  |+...++..+..+|...|++
T Consensus       137 ~~~~~~~~-~Ai~~y~~a---l~~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~--p~~~~a~~~~a~a~~~lg~~  210 (615)
T TIGR00990       137 AYRNKDFN-KAIKLYSKA---IECKPDPVYYSNRAACHNALGDWEKVVEDTTAALELD--PDYSKALNRRANAYDGLGKY  210 (615)
T ss_pred             HHHcCCHH-HHHHHHHHH---HhcCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHcCCH
Confidence            44556666 666666622   1233454555555555666778888888777776653  33334555566777777777


Q ss_pred             HHHHhhhhhHhhh-----------------------------hcCCCCCCHHHHHHHHH---------------------
Q 036107          109 VEALKCFCFTWAK-----------------------------TQTGYMHTPETYNAMVE---------------------  138 (441)
Q Consensus       109 ~~A~~~~~~~~~~-----------------------------~~~g~~p~~~~y~~li~---------------------  138 (441)
                      ++|+.-|......                             ......|..........                     
T Consensus       211 ~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  290 (615)
T TIGR00990       211 ADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELDEET  290 (615)
T ss_pred             HHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhccccccccc
Confidence            7776544211000                             00000011110000000                     


Q ss_pred             ------H------HHcCCChhHHHHHHHHHHHhcCCCccHHHHHHHHhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 036107          139 ------A------LGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKD  206 (441)
Q Consensus       139 ------~------~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~  206 (441)
                            .      ....+++++|.+.|++....+...+.           ....+..+...+...|++++|+..|+..-.
T Consensus       291 ~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~-----------~a~a~~~lg~~~~~~g~~~eA~~~~~kal~  359 (615)
T TIGR00990       291 GNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEK-----------EAIALNLRGTFKCLKGKHLEALADLSKSIE  359 (615)
T ss_pred             ccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChh-----------hHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence                  0      01124667777777777664311111           456677777788888999999999988754


Q ss_pred             CCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 036107          207 CISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCT  286 (441)
Q Consensus       207 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~  286 (441)
                      ..+-+...|..+...+...|++++|...|++..+.. +.+..+|..+...+...|++++|...|++..+... .+...+.
T Consensus       360 l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P-~~~~~~~  437 (615)
T TIGR00990       360 LDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDP-DFIFSHI  437 (615)
T ss_pred             cCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCc-cCHHHHH
Confidence            434456677888888888999999999998887642 23467888888888889999999999998877532 3566777


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCccchHHHHHHHHHhcCChhHHHHHHHHHHHcCCC-
Q 036107          287 IVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCK-  365 (441)
Q Consensus       287 ~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~-  365 (441)
                      .+...+.+.|++++|...|++..+.  .|+..               ..|+.+...+...|++++|++.|++..+..-. 
T Consensus       438 ~la~~~~~~g~~~eA~~~~~~al~~--~P~~~---------------~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~  500 (615)
T TIGR00990       438 QLGVTQYKEGSIASSMATFRRCKKN--FPEAP---------------DVYNYYGELLLDQNKFDEAIEKFDTAIELEKET  500 (615)
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHh--CCCCh---------------HHHHHHHHHHHHccCHHHHHHHHHHHHhcCCcc
Confidence            7888888999999999999988764  23321               23777888889999999999999997754211 


Q ss_pred             -C---CHH-HHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCccHHHHHHHHHHHHhh
Q 036107          366 -P---DCE-THARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQ-ESTHKMLAEELEKKSLGNAKERIDELLTHATE  437 (441)
Q Consensus       366 -p---~~~-t~~~li~~~~~~g~~~~a~~~~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~  437 (441)
                       +   +.. .++.....+...|++++|.+   .+.+....  .|+ ...+..+...+.+.|++++|.+.++...+..+
T Consensus       501 ~~~~~~~~~l~~~a~~~~~~~~~~~eA~~---~~~kAl~l--~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~  573 (615)
T TIGR00990       501 KPMYMNVLPLINKALALFQWKQDFIEAEN---LCEKALII--DPECDIAVATMAQLLLQQGDVDEALKLFERAAELAR  573 (615)
T ss_pred             ccccccHHHHHHHHHHHHHHhhhHHHHHH---HHHHHHhc--CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhc
Confidence             1   111 12222223344689999977   45554333  343 44788899999999999999999988765543

>KOG4422 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.55  E-value=2.2e-12  Score=115.62  Aligned_cols=290  Identities=15%  Similarity=0.147  Sum_probs=210.7

Q ss_pred             HHHHHHHHHHcCCChhHHHHHHHHHHHhcCCCccHHHHHHHHhhc---C--HH---HHHHHHHH--H-------HhcCCH
Q 036107          132 TYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRL---D--TR---AMSVLMDT--L-------VKRNSV  194 (441)
Q Consensus       132 ~y~~li~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~---~--~~---~~~~li~~--~-------~~~g~~  194 (441)
                      +=|.++. ....|...++.-+++.|...+ ..++..+-..+++..   +  ..   -|.-.+..  +       -+.|.+
T Consensus       118 ~E~nL~k-mIS~~EvKDs~ilY~~m~~e~-~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G~v  195 (625)
T KOG4422|consen  118 TENNLLK-MISSREVKDSCILYERMRSEN-VDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSGAV  195 (625)
T ss_pred             chhHHHH-HHhhcccchhHHHHHHHHhcC-CCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccccccccccccH
Confidence            4444443 455788889999999999877 444433333332211   0  00   00000000  0       011222


Q ss_pred             HHHHHHHHHhhhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 036107          195 AHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQ  274 (441)
Q Consensus       195 ~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~  274 (441)
                        |.-+|+..    +.+..+|.++|.+.||-...+.|.+++++-.....+.+..+||.+|.+-+-..+    .++..+|.
T Consensus       196 --AdL~~E~~----PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~----K~Lv~EMi  265 (625)
T KOG4422|consen  196 --ADLLFETL----PKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVG----KKLVAEMI  265 (625)
T ss_pred             --HHHHHhhc----CCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhcc----HHHHHHHH
Confidence              22222222    456778999999999999999999999999998889999999999987665443    78999999


Q ss_pred             HcCCCCCHHHHHHHHHHHHhcCCHHH----HHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCcc-----------------
Q 036107          275 EKGCKPSVITCTIVMHALEKAKQIYE----ALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRF-----------------  333 (441)
Q Consensus       275 ~~g~~p~~~~~~~ll~~~~~~~~~~~----a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~-----------------  333 (441)
                      ...+.||..|||+++++..+.|+++.    |.+++.+|++.|+.|...+|..+|..+++.++.                 
T Consensus       266 sqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltG  345 (625)
T KOG4422|consen  266 SQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTG  345 (625)
T ss_pred             HhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhcc
Confidence            99999999999999999999998875    557888999999999999999999988888776                 


Q ss_pred             -----------chHHHHHHHHHhcCChhHHHHHHHHHHHcC----CCCCH---HHHHHHHHHHHhcCChhhHHHHHHHHH
Q 036107          334 -----------LIYNTMISSACVRSEEGNALKLRQKIEEDS----CKPDC---ETHARSLKMCCHKKRMKDGMLVLNLMR  395 (441)
Q Consensus       334 -----------~~~~~li~~~~~~g~~~~a~~~~~~m~~~g----~~p~~---~t~~~li~~~~~~g~~~~a~~~~~~~~  395 (441)
                                 ..|-..+..|.+..+.+.|.++-.-.+...    +.|+.   +-|..+....|+....+..   +..+.
T Consensus       346 K~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~---~~~Y~  422 (625)
T KOG4422|consen  346 KTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVT---LKWYE  422 (625)
T ss_pred             CcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHH---HHHHH
Confidence                       445556666667777777777665554211    23332   2356677777776666665   45777


Q ss_pred             HHHHCCCCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHh
Q 036107          396 EMLSKGIVPQESTHKMLAEELEKKSLGNAKERIDELLTHAT  436 (441)
Q Consensus       396 ~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~  436 (441)
                      .|.-.-+.|+..+...++++..-.|.++-.-++|..+....
T Consensus       423 ~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~g  463 (625)
T KOG4422|consen  423 DLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYG  463 (625)
T ss_pred             HhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhh
Confidence            78778888999999999999999999999999999887655

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=99.54  E-value=1.1e-10  Score=126.14  Aligned_cols=341  Identities=12%  Similarity=0.028  Sum_probs=168.5

Q ss_pred             HhhhhchhhHHHHHhhhcCchhhHHHHHHHHHhcCCChHHHHHHHhhhhhHhhhhcCCCCCCHHHHHHH-----------
Q 036107           68 ESLKLNEQSRISSHALSEDHETDVDKVSEILRKRYPSPDKVVEALKCFCFTWAKTQTGYMHTPETYNAM-----------  136 (441)
Q Consensus        68 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~g~~p~~~~y~~l-----------  136 (441)
                      ..++++.|...+...++..  |+...+...+...|.+.|+.++|+..|+...... +. .+....|..+           
T Consensus       281 ~~g~~~~A~~~l~~aL~~~--P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~-p~-~~~~~~~~~ll~~~~~~~~~~  356 (1157)
T PRK11447        281 DSGQGGKAIPELQQAVRAN--PKDSEALGALGQAYSQQGDRARAVAQFEKALALD-PH-SSNRDKWESLLKVNRYWLLIQ  356 (1157)
T ss_pred             HCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CC-ccchhHHHHHHHhhhHHHHHH
Confidence            4456666666666666543  2222455556666667777777777665322211 00 1111112111           


Q ss_pred             -HHHHHcCCChhHHHHHHHHHHHhcCCCccHHHHHHHHhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcHHHH
Q 036107          137 -VEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIF  215 (441)
Q Consensus       137 -i~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~  215 (441)
                       -..+.+.|++++|.+.|++.....+.              +...+..+-..+...|++++|++.|++.-...+.+...+
T Consensus       357 ~g~~~~~~g~~~eA~~~~~~Al~~~P~--------------~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~  422 (1157)
T PRK11447        357 QGDAALKANNLAQAERLYQQARQVDNT--------------DSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAV  422 (1157)
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHhCCC--------------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHH
Confidence             23455667777777777776664321              456666677777778888888888877643323333344


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHhhCCCC--------CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 036107          216 DVLIHGWCKTRKSDYAQKAMKEMFQHGFS--------PDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTI  287 (441)
Q Consensus       216 ~~li~~~~~~~~~~~a~~~~~~m~~~g~~--------p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~  287 (441)
                      ..+...|. .++.++|..+++.+....-.        .....+..+...+...|++++|.+.|++..+.... +...+..
T Consensus       423 ~~L~~l~~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~-~~~~~~~  500 (1157)
T PRK11447        423 RGLANLYR-QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPG-SVWLTYR  500 (1157)
T ss_pred             HHHHHHHH-hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHH
Confidence            33333332 12333333333322111000        00011222223333444555555555544443211 2333444


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHhhCC----------------------------------CCCCHHH---------HHHHH
Q 036107          288 VMHALEKAKQIYEALKVYEKMKSDD----------------------------------CLTDTSF---------YSSLI  324 (441)
Q Consensus       288 ll~~~~~~~~~~~a~~~~~~m~~~g----------------------------------~~~~~~~---------~~~li  324 (441)
                      +...|.+.|++++|...++++.+..                                  ..++...         +..+.
T Consensus       501 LA~~~~~~G~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a  580 (1157)
T PRK11447        501 LAQDLRQAGQRSQADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETA  580 (1157)
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHH
Confidence            4444445555555555554444321                                  1111000         00111


Q ss_pred             HHHHhcCcc--------------chHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHH
Q 036107          325 FILSKAVRF--------------LIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLV  390 (441)
Q Consensus       325 ~~~~~~g~~--------------~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~  390 (441)
                      ..+...|+.              ..+..+-..+.+.|+.++|++.|++..+.. .-+...+..+...+...|++++|.+.
T Consensus       581 ~~l~~~G~~~eA~~~l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~-P~~~~a~~~la~~~~~~g~~~eA~~~  659 (1157)
T PRK11447        581 NRLRDSGKEAEAEALLRQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTRE-PGNADARLGLIEVDIAQGDLAAARAQ  659 (1157)
T ss_pred             HHHHHCCCHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence            222222222              234455666677777777777777776542 22345666777777777777777664


Q ss_pred             HHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCccHHHHHHHHHHH
Q 036107          391 LNLMREMLSKGIVP-QESTHKMLAEELEKKSLGNAKERIDELLTH  434 (441)
Q Consensus       391 ~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~  434 (441)
                      ++   ....  ..| +...+..+..++.+.|++++|.++++.+..
T Consensus       660 l~---~ll~--~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~  699 (1157)
T PRK11447        660 LA---KLPA--TANDSLNTQRRVALAWAALGDTAAAQRTFNRLIP  699 (1157)
T ss_pred             HH---HHhc--cCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhh
Confidence            44   3221  233 334555566666777777777777777654

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=99.52  E-value=2.7e-11  Score=130.67  Aligned_cols=332  Identities=9%  Similarity=0.012  Sum_probs=183.7

Q ss_pred             HHHhhhhchhhHHHHHhhhcCchhhHHHHHHHHHhcCCChHHHHHHHhhhhhHhhhhcCCCCC-CHHHHHHHHHHHHcCC
Q 036107           66 WVESLKLNEQSRISSHALSEDHETDVDKVSEILRKRYPSPDKVVEALKCFCFTWAKTQTGYMH-TPETYNAMVEALGKSK  144 (441)
Q Consensus        66 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~g~~p-~~~~y~~li~~~~~~~  144 (441)
                      +.+.+++++|...+..+.+....  ...+...+..++...|+.++|++.|+.....     .| +...+..+...+. .+
T Consensus       361 ~~~~g~~~eA~~~~~~Al~~~P~--~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~-----~p~~~~a~~~L~~l~~-~~  432 (1157)
T PRK11447        361 ALKANNLAQAERLYQQARQVDNT--DSYAVLGLGDVAMARKDYAAAERYYQQALRM-----DPGNTNAVRGLANLYR-QQ  432 (1157)
T ss_pred             HHHCCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHH-hc
Confidence            34556777777777777765432  2244555667777778888888877533322     12 2334444444442 23


Q ss_pred             ChhHHHHHHHHHHHhcCCCccHHHHHHHHhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcHHHHHHHHHHHHh
Q 036107          145 KFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCK  224 (441)
Q Consensus       145 ~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~  224 (441)
                      +.++|...++.+.....     ..+...........+..+...+...|++++|.+.|++.....+-+...+..+...|.+
T Consensus       433 ~~~~A~~~l~~l~~~~~-----~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~  507 (1157)
T PRK11447        433 SPEKALAFIASLSASQR-----RSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQ  507 (1157)
T ss_pred             CHHHHHHHHHhCCHHHH-----HHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            44555554443322110     0011111111223344455555555666666666655533333344445555555556


Q ss_pred             cCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC---------------------------
Q 036107          225 TRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKG---------------------------  277 (441)
Q Consensus       225 ~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g---------------------------  277 (441)
                      .|++++|...|++..+.. +.+...+..+...+...++.++|...++.+....                           
T Consensus       508 ~G~~~~A~~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~  586 (1157)
T PRK11447        508 AGQRSQADALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDS  586 (1157)
T ss_pred             cCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHC
Confidence            666666666665554421 1122222222222333444444444443322111                           


Q ss_pred             ------------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCccchHHHHHHHHHh
Q 036107          278 ------------CKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACV  345 (441)
Q Consensus       278 ------------~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~~~li~~~~~  345 (441)
                                  .+.+...+..+...+.+.|++++|...|+...+..  |+..               ..+..+...|..
T Consensus       587 G~~~eA~~~l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~--P~~~---------------~a~~~la~~~~~  649 (1157)
T PRK11447        587 GKEAEAEALLRQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTRE--PGNA---------------DARLGLIEVDIA  649 (1157)
T ss_pred             CCHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCH---------------HHHHHHHHHHHH
Confidence                        12334445555566666666666666666666542  2211               347888889999


Q ss_pred             cCChhHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCC--CCC---CHHHHHHHHHHHHhc
Q 036107          346 RSEEGNALKLRQKIEEDSCKPD-CETHARSLKMCCHKKRMKDGMLVLNLMREMLSKG--IVP---QESTHKMLAEELEKK  419 (441)
Q Consensus       346 ~g~~~~a~~~~~~m~~~g~~p~-~~t~~~li~~~~~~g~~~~a~~~~~~~~~m~~~~--~~p---~~~~~~~ll~~~~~~  419 (441)
                      .|+.++|++.++...+.  .|+ ..+...+..++...|++++|.++   +++.....  -.|   +...+..+.+.+.+.
T Consensus       650 ~g~~~eA~~~l~~ll~~--~p~~~~~~~~la~~~~~~g~~~eA~~~---~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~  724 (1157)
T PRK11447        650 QGDLAAARAQLAKLPAT--ANDSLNTQRRVALAWAALGDTAAAQRT---FNRLIPQAKSQPPSMESALVLRDAARFEAQT  724 (1157)
T ss_pred             CCCHHHHHHHHHHHhcc--CCCChHHHHHHHHHHHhCCCHHHHHHH---HHHHhhhCccCCcchhhHHHHHHHHHHHHHc
Confidence            99999999999987653  444 34566677788899999999874   44443322  122   234666778888999


Q ss_pred             CCccHHHHHHHHHH
Q 036107          420 SLGNAKERIDELLT  433 (441)
Q Consensus       420 g~~~~a~~~~~~m~  433 (441)
                      |++++|.+.++...
T Consensus       725 G~~~~A~~~y~~Al  738 (1157)
T PRK11447        725 GQPQQALETYKDAM  738 (1157)
T ss_pred             CCHHHHHHHHHHHH
Confidence            99999999998764

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=99.50  E-value=3.2e-10  Score=117.14  Aligned_cols=374  Identities=9%  Similarity=-0.033  Sum_probs=207.2

Q ss_pred             hcccchhcccccCccchhccCCCCCCCCcccccchhhHHHhhhhchhhHHHHHhhhcCchhhHHHHHHHHHhcCCChHHH
Q 036107           29 LCNRHCITNELTGLPSWLKFFDTQSPDEDFVIPSLASWVESLKLNEQSRISSHALSEDHETDVDKVSEILRKRYPSPDKV  108 (441)
Q Consensus        29 l~~~~~~~~~a~~l~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~  108 (441)
                      ....|+.. +|++++.-..  .....+...+..+-.++...++++.|..++....+.....  ..+...+...+...|+.
T Consensus        25 a~~~g~~~-~A~~~~~~~~--~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~--~~a~~~la~~l~~~g~~   99 (765)
T PRK10049         25 ALWAGQDA-EVITVYNRYR--VHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQN--DDYQRGLILTLADAGQY   99 (765)
T ss_pred             HHHcCCHH-HHHHHHHHHH--hhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHCCCH
Confidence            44555555 6654444222  1111133335566666677788888888888777653222  13444566677788888


Q ss_pred             HHHHhhhhhHhhhhcCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHhcCCCccHHHHHHHHhhcCHHHHHHHHHHH
Q 036107          109 VEALKCFCFTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTL  188 (441)
Q Consensus       109 ~~A~~~~~~~~~~~~~g~~p~~~~y~~li~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~  188 (441)
                      ++|+..++.....    ...+.. |..+-.++...|+.++|+..+++..+..|.              +...+..+..++
T Consensus       100 ~eA~~~l~~~l~~----~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~--------------~~~~~~~la~~l  160 (765)
T PRK10049        100 DEALVKAKQLVSG----APDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQ--------------TQQYPTEYVQAL  160 (765)
T ss_pred             HHHHHHHHHHHHh----CCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCC--------------CHHHHHHHHHHH
Confidence            8888888533222    222445 777777888888888888888888885533              556666677777


Q ss_pred             HhcCCHHHHHHHHHHhhhCCCCcH------HHHHHHHHHHH-----hcCCH---HHHHHHHHHHhhC-CCCCCHh-hHH-
Q 036107          189 VKRNSVAHAYKVFLKFKDCISLSS------QIFDVLIHGWC-----KTRKS---DYAQKAMKEMFQH-GFSPDGV-SYT-  251 (441)
Q Consensus       189 ~~~g~~~~a~~~~~~~~~~~~~~~------~~~~~li~~~~-----~~~~~---~~a~~~~~~m~~~-g~~p~~~-~~~-  251 (441)
                      ...|..+.|++.++....  .|+.      .....++....     ..+++   ++|++.++.+.+. .-.|+.. .+. 
T Consensus       161 ~~~~~~e~Al~~l~~~~~--~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~  238 (765)
T PRK10049        161 RNNRLSAPALGAIDDANL--TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQR  238 (765)
T ss_pred             HHCCChHHHHHHHHhCCC--CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHH
Confidence            788888888888875432  1111      01111111111     11112   4444455554432 1112111 110 


Q ss_pred             ---HHHHHHHhcCCHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC---CHHHHHHHH
Q 036107          252 ---CFIEHYCREKDFRKVDYTLKEMQEKGCK-PSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLT---DTSFYSSLI  324 (441)
Q Consensus       252 ---~li~~~~~~g~~~~a~~l~~~m~~~g~~-p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~---~~~~~~~li  324 (441)
                         ..+.++...|++++|...|+.+.+.+.+ |+. .-..+..+|...|++++|...|+++.+..-..   .......+.
T Consensus       239 a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~  317 (765)
T PRK10049        239 ARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLF  317 (765)
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHH
Confidence               1122334445556666666665554321 221 11113445555566666666655554422100   011222222


Q ss_pred             HHHHhcCcc---------------------------------chHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHH
Q 036107          325 FILSKAVRF---------------------------------LIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETH  371 (441)
Q Consensus       325 ~~~~~~g~~---------------------------------~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~  371 (441)
                      .++.+.|+.                                 ..+..+...+...|+.++|+++++++.... .-+...+
T Consensus       318 ~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~-P~n~~l~  396 (765)
T PRK10049        318 YSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNA-PGNQGLR  396 (765)
T ss_pred             HHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHH
Confidence            233333333                                 013445667778888888988888887542 3344567


Q ss_pred             HHHHHHHHhcCChhhHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCccHHHHHHHHHHHH
Q 036107          372 ARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQ-ESTHKMLAEELEKKSLGNAKERIDELLTHA  435 (441)
Q Consensus       372 ~~li~~~~~~g~~~~a~~~~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~  435 (441)
                      ..+...+...|++++|++   .+++..+  +.|+ ...+..+...+.+.|++++|+.+++.+.+.
T Consensus       397 ~~lA~l~~~~g~~~~A~~---~l~~al~--l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~  456 (765)
T PRK10049        397 IDYASVLQARGWPRAAEN---ELKKAEV--LEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAR  456 (765)
T ss_pred             HHHHHHHHhcCCHHHHHH---HHHHHHh--hCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence            777778888888888877   4444332  3455 456666666778888999999988887654

>PF13041 PPR_2: PPR repeat family

Probab=99.47  E-value=1.2e-13  Score=89.33  Aligned_cols=49  Identities=35%  Similarity=0.655  Sum_probs=24.9

Q ss_pred             CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 036107          245 PDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALE  293 (441)
Q Consensus       245 p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~  293 (441)
                      ||+.+||++|++|++.|++++|.++|++|.+.|++||..||+.+|++|+
T Consensus         1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~   49 (50)
T PF13041_consen    1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC   49 (50)
T ss_pred             CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence            4445555555555555555555555555555555555555555555444

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=99.47  E-value=3.6e-10  Score=114.48  Aligned_cols=295  Identities=11%  Similarity=-0.006  Sum_probs=215.4

Q ss_pred             HHhcCCChHHHHHHHhhhhhHhhhhcCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHhcCCCccHHHHHHHHhhcC
Q 036107           98 LRKRYPSPDKVVEALKCFCFTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLD  177 (441)
Q Consensus        98 l~~~~~~~g~~~~A~~~~~~~~~~~~~g~~p~~~~y~~li~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~  177 (441)
                      ....+.+.|+++.|+..|...     ....|+...|..+-.+|.+.|++++|++.++...+..+.              +
T Consensus       133 ~G~~~~~~~~~~~Ai~~y~~a-----l~~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~--------------~  193 (615)
T TIGR00990       133 KGNKAYRNKDFNKAIKLYSKA-----IECKPDPVYYSNRAACHNALGDWEKVVEDTTAALELDPD--------------Y  193 (615)
T ss_pred             HHHHHHHcCCHHHHHHHHHHH-----HhcCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCC--------------C
Confidence            345677789999999999533     245688889999999999999999999999998885522              5


Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHhhh--CC---------------------------C----CcHHHHHHH------
Q 036107          178 TRAMSVLMDTLVKRNSVAHAYKVFLKFKD--CI---------------------------S----LSSQIFDVL------  218 (441)
Q Consensus       178 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~--~~---------------------------~----~~~~~~~~l------  218 (441)
                      ...+..+-.++...|++++|+.-|.....  +.                           .    |........      
T Consensus       194 ~~a~~~~a~a~~~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  273 (615)
T TIGR00990       194 SKALNRRANAYDGLGKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRP  273 (615)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccC
Confidence            67888889999999999999876543310  00                           0    000000000      


Q ss_pred             ---------------------HHHH------HhcCCHHHHHHHHHHHhhCC-CCC-CHhhHHHHHHHHHhcCCHHHHHHH
Q 036107          219 ---------------------IHGW------CKTRKSDYAQKAMKEMFQHG-FSP-DGVSYTCFIEHYCREKDFRKVDYT  269 (441)
Q Consensus       219 ---------------------i~~~------~~~~~~~~a~~~~~~m~~~g-~~p-~~~~~~~li~~~~~~g~~~~a~~l  269 (441)
                                           +...      ...+++++|.+.|++..+.+ ..| +...|+.+-..+...|++++|+..
T Consensus       274 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~  353 (615)
T TIGR00990       274 KPRPAGLEDSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALAD  353 (615)
T ss_pred             CcchhhhhcccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHH
Confidence                                 0000      11257889999999988754 233 345677888888899999999999


Q ss_pred             HHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCccchHHHHHHHHHhcCCh
Q 036107          270 LKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEE  349 (441)
Q Consensus       270 ~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~~~li~~~~~~g~~  349 (441)
                      |++..+... -+...|..+...+...|++++|...|+...+.. +.+..                .|..+...+...|++
T Consensus       354 ~~kal~l~P-~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~----------------~~~~lg~~~~~~g~~  415 (615)
T TIGR00990       354 LSKSIELDP-RVTQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPD----------------IYYHRAQLHFIKGEF  415 (615)
T ss_pred             HHHHHHcCC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHH----------------HHHHHHHHHHHcCCH
Confidence            999877532 236678888888999999999999999987753 11232                377778888889999


Q ss_pred             hHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCccHHHHH
Q 036107          350 GNALKLRQKIEEDSCKP-DCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEKKSLGNAKERI  428 (441)
Q Consensus       350 ~~a~~~~~~m~~~g~~p-~~~t~~~li~~~~~~g~~~~a~~~~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~  428 (441)
                      ++|+..|++..+.  .| +...+..+...+.+.|++++|...   +++.... .+-+...|..+-..+...|++++|.+.
T Consensus       416 ~~A~~~~~kal~l--~P~~~~~~~~la~~~~~~g~~~eA~~~---~~~al~~-~P~~~~~~~~lg~~~~~~g~~~~A~~~  489 (615)
T TIGR00990       416 AQAGKDYQKSIDL--DPDFIFSHIQLGVTQYKEGSIASSMAT---FRRCKKN-FPEAPDVYNYYGELLLDQNKFDEAIEK  489 (615)
T ss_pred             HHHHHHHHHHHHc--CccCHHHHHHHHHHHHHCCCHHHHHHH---HHHHHHh-CCCChHHHHHHHHHHHHccCHHHHHHH
Confidence            9999999998764  44 455677777888899999999774   4443322 233467888888999999999999998


Q ss_pred             HHHHHHH
Q 036107          429 DELLTHA  435 (441)
Q Consensus       429 ~~~m~~~  435 (441)
                      ++.....
T Consensus       490 ~~~Al~l  496 (615)
T TIGR00990       490 FDTAIEL  496 (615)
T ss_pred             HHHHHhc
Confidence            8885544

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=99.46  E-value=3.4e-10  Score=107.97  Aligned_cols=281  Identities=10%  Similarity=0.041  Sum_probs=208.1

Q ss_pred             hHHHHHHHhhhhhHhhhhcCCCCCCHHHHHHH-HHHHHcCCChhHHHHHHHHHHHhcCCCccHHHHHHHHhhcCHHHHH-
Q 036107          105 PDKVVEALKCFCFTWAKTQTGYMHTPETYNAM-VEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMS-  182 (441)
Q Consensus       105 ~g~~~~A~~~~~~~~~~~~~g~~p~~~~y~~l-i~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~-  182 (441)
                      .|++..|.+......     ...+++..+-.+ ..+..+.|+++.|.+.+.++.+..+               +..... 
T Consensus        97 eGd~~~A~k~l~~~~-----~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~---------------~~~~~~~  156 (398)
T PRK10747         97 EGDYQQVEKLMTRNA-----DHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAELAD---------------NDQLPVE  156 (398)
T ss_pred             CCCHHHHHHHHHHHH-----hcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC---------------cchHHHH
Confidence            577788887764221     112233433333 4444788999999999999987441               222222 


Q ss_pred             -HHHHHHHhcCCHHHHHHHHHHhhhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCH-------hhHHHHH
Q 036107          183 -VLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDG-------VSYTCFI  254 (441)
Q Consensus       183 -~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~-------~~~~~li  254 (441)
                       .....+...|+.+.|...++.+.+..+-+......+...|.+.|++++|.+++..+.+.+..++.       .+|..++
T Consensus       157 l~~a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~  236 (398)
T PRK10747        157 ITRVRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLM  236 (398)
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Confidence             33567888999999999999997766778888999999999999999999999999987655332       2344445


Q ss_pred             HHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCccc
Q 036107          255 EHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFL  334 (441)
Q Consensus       255 ~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~  334 (441)
                      .......+.+...++++.+-+. .+.+......+..++...|+.++|.+++++..+.  .++.                 
T Consensus       237 ~~~~~~~~~~~l~~~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~-----------------  296 (398)
T PRK10747        237 DQAMADQGSEGLKRWWKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDE-----------------  296 (398)
T ss_pred             HHHHHhcCHHHHHHHHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCH-----------------
Confidence            5555555666777777766433 3457788899999999999999999999998874  3433                 


Q ss_pred             hHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 036107          335 IYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCE-THARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLA  413 (441)
Q Consensus       335 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~-t~~~li~~~~~~g~~~~a~~~~~~~~~m~~~~~~p~~~~~~~ll  413 (441)
                       --.++.+....++.+++++..+...+.  .|+.. .+..+-..|.+.+++++|.+.   |+...  ...|+..+|..+.
T Consensus       297 -~l~~l~~~l~~~~~~~al~~~e~~lk~--~P~~~~l~l~lgrl~~~~~~~~~A~~~---le~al--~~~P~~~~~~~La  368 (398)
T PRK10747        297 -RLVLLIPRLKTNNPEQLEKVLRQQIKQ--HGDTPLLWSTLGQLLMKHGEWQEASLA---FRAAL--KQRPDAYDYAWLA  368 (398)
T ss_pred             -HHHHHHhhccCCChHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHCCCHHHHHHH---HHHHH--hcCCCHHHHHHHH
Confidence             223445555668999999999998754  55554 466777899999999999884   44533  3579999999999


Q ss_pred             HHHHhcCCccHHHHHHHHHH
Q 036107          414 EELEKKSLGNAKERIDELLT  433 (441)
Q Consensus       414 ~~~~~~g~~~~a~~~~~~m~  433 (441)
                      ..+.+.|+.++|.++++.-.
T Consensus       369 ~~~~~~g~~~~A~~~~~~~l  388 (398)
T PRK10747        369 DALDRLHKPEEAAAMRRDGL  388 (398)
T ss_pred             HHHHHcCCHHHHHHHHHHHH
Confidence            99999999999999988643

>PF13041 PPR_2: PPR repeat family

Probab=99.46  E-value=1.5e-13  Score=88.85  Aligned_cols=50  Identities=34%  Similarity=0.651  Sum_probs=48.1

Q ss_pred             CcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHh
Q 036107          210 LSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCR  259 (441)
Q Consensus       210 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~  259 (441)
                      ||..+||++|++|++.|++++|.++|++|.+.|++||..||+.+|++|++
T Consensus         1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k   50 (50)
T PF13041_consen    1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK   50 (50)
T ss_pred             CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence            78999999999999999999999999999999999999999999999975

>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]

Probab=99.45  E-value=3.8e-11  Score=116.67  Aligned_cols=227  Identities=14%  Similarity=0.088  Sum_probs=128.7

Q ss_pred             cCCCCCCCCcccccchhhHHHhhhhchhhHHHHHhhhcCchhhHHHHHHHHHhcCCChHHHHHHHhhhhhHhhhhcCCCC
Q 036107           48 FFDTQSPDEDFVIPSLASWVESLKLNEQSRISSHALSEDHETDVDKVSEILRKRYPSPDKVVEALKCFCFTWAKTQTGYM  127 (441)
Q Consensus        48 ~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~g~~  127 (441)
                      .-.+..|+..||.+++..+|..|+.+.|. ++..|.-...... +.+++.++......++.+.+.              .
T Consensus        17 e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~-e~vf~~lv~sh~~And~Enpk--------------e   80 (1088)
T KOG4318|consen   17 EISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVR-EGVFRGLVASHKEANDAENPK--------------E   80 (1088)
T ss_pred             HHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhccccccc-chhHHHHHhcccccccccCCC--------------C
Confidence            34688999999999999999999999999 8898877665555 478889988888888776664              4


Q ss_pred             CCHHHHHHHHHHHHcCCChhH---HHHHHHHHHH----hcCCCccHHHHHH--HHhhcCHHHHHHHHHHHHhcCCHHHHH
Q 036107          128 HTPETYNAMVEALGKSKKFGL---MWELVKEIDE----LSNGYVSLAAMST--VMRRLDTRAMSVLMDTLVKRNSVAHAY  198 (441)
Q Consensus       128 p~~~~y~~li~~~~~~~~~~~---a~~l~~~m~~----~~~~~~~~~~~~~--~~~~~~~~~~~~li~~~~~~g~~~~a~  198 (441)
                      |...+|+.+..+|...||+..   ..+.++.+..    .|.+.+.......  +.....+. -..++......|.++.++
T Consensus        81 p~aDtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpd-a~n~illlv~eglwaqll  159 (1088)
T KOG4318|consen   81 PLADTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPD-AENAILLLVLEGLWAQLL  159 (1088)
T ss_pred             CchhHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchh-HHHHHHHHHHHHHHHHHH
Confidence            788999999999999998765   3332222222    2222221111111  11111111 112222333344444444


Q ss_pred             HHHHHhh------------------------------hCC-CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCH
Q 036107          199 KVFLKFK------------------------------DCI-SLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDG  247 (441)
Q Consensus       199 ~~~~~~~------------------------------~~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~  247 (441)
                      ++...++                              ... .|+..+|.+++.+-.-+|+++.|..++.+|++.|++.+.
T Consensus       160 kll~~~Pvsa~~~p~~vfLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~  239 (1088)
T KOG4318|consen  160 KLLAKVPVSAWNAPFQVFLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRA  239 (1088)
T ss_pred             HHHhhCCcccccchHHHHHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCccc
Confidence            4443331                              111 245555555555555555555555555555555555555


Q ss_pred             hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 036107          248 VSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEK  294 (441)
Q Consensus       248 ~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~  294 (441)
                      +-|-.+|-+   .++...+..+++-|++.|+.|+..|+..-+..+..
T Consensus       240 HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~  283 (1088)
T KOG4318|consen  240 HYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLS  283 (1088)
T ss_pred             ccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhc
Confidence            444444433   44444555555555555555555555544444444

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.38  E-value=6e-11  Score=111.20  Aligned_cols=306  Identities=10%  Similarity=0.055  Sum_probs=147.1

Q ss_pred             CcccccchhhHHHhhhhchhhHHHHHhhhcCchhhHHHHHHHHHhcCCChHHHHHHHhhhhhHhhhhcCCCCCCHH----
Q 036107           56 EDFVIPSLASWVESLKLNEQSRISSHALSEDHETDVDKVSEILRKRYPSPDKVVEALKCFCFTWAKTQTGYMHTPE----  131 (441)
Q Consensus        56 ~~~~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~g~~p~~~----  131 (441)
                      ..+|+.+-..+...|.++.+...+..+++-.  |+.-..+.-+..++...|+.+.|.+.|...     ..+.|+..    
T Consensus       116 ae~ysn~aN~~kerg~~~~al~~y~~aiel~--p~fida~inla~al~~~~~~~~a~~~~~~a-----lqlnP~l~ca~s  188 (966)
T KOG4626|consen  116 AEAYSNLANILKERGQLQDALALYRAAIELK--PKFIDAYINLAAALVTQGDLELAVQCFFEA-----LQLNPDLYCARS  188 (966)
T ss_pred             HHHHHHHHHHHHHhchHHHHHHHHHHHHhcC--chhhHHHhhHHHHHHhcCCCcccHHHHHHH-----HhcCcchhhhhc
Confidence            4566667777777777777777777666543  211123333444555555555555555211     11223333    


Q ss_pred             -------------------------------HHHHHHHHHHcCCChhHHHHHHHHHHHhcCCCccHHHHHHHHhhcCHHH
Q 036107          132 -------------------------------TYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRA  180 (441)
Q Consensus       132 -------------------------------~y~~li~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~  180 (441)
                                                     .|+.|-..+-..|+.-.|++-|++..+.++.++              ..
T Consensus       189 ~lgnLlka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~--------------dA  254 (966)
T KOG4626|consen  189 DLGNLLKAEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFL--------------DA  254 (966)
T ss_pred             chhHHHHhhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcch--------------HH
Confidence                                           344444444444444444444444444333322              34


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC-HhhHHHHHHHHHh
Q 036107          181 MSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPD-GVSYTCFIEHYCR  259 (441)
Q Consensus       181 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~  259 (441)
                      |-.|-..|...+.+++|...|.+.-.--+.....+..+-..|-..|.++.|...|++..+.  .|+ ...|+.|-.++-.
T Consensus       255 YiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~--~P~F~~Ay~NlanALkd  332 (966)
T KOG4626|consen  255 YINLGNVYKEARIFDRAVSCYLRALNLRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALEL--QPNFPDAYNNLANALKD  332 (966)
T ss_pred             HhhHHHHHHHHhcchHHHHHHHHHHhcCCcchhhccceEEEEeccccHHHHHHHHHHHHhc--CCCchHHHhHHHHHHHh
Confidence            4444455555555555555554432222233444444555555555555555555555442  333 2455555555555


Q ss_pred             cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC-HHHHHHHHHHHHhcCcc-----
Q 036107          260 EKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTD-TSFYSSLIFILSKAVRF-----  333 (441)
Q Consensus       260 ~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~-~~~~~~li~~~~~~g~~-----  333 (441)
                      .|++.+|.+.+.+...... --....+.|-..|...|.+++|..+|....+.  .|. ....+.|-..|-..|+.     
T Consensus       333 ~G~V~ea~~cYnkaL~l~p-~hadam~NLgni~~E~~~~e~A~~ly~~al~v--~p~~aaa~nNLa~i~kqqgnl~~Ai~  409 (966)
T KOG4626|consen  333 KGSVTEAVDCYNKALRLCP-NHADAMNNLGNIYREQGKIEEATRLYLKALEV--FPEFAAAHNNLASIYKQQGNLDDAIM  409 (966)
T ss_pred             ccchHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHhccchHHHHHHHHHHhh--ChhhhhhhhhHHHHHHhcccHHHHHH
Confidence            5555555555555544311 12344555555555555555555555554442  121 11222333333333332     


Q ss_pred             -------------chHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCChhhHHH
Q 036107          334 -------------LIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDC-ETHARSLKMCCHKKRMKDGML  389 (441)
Q Consensus       334 -------------~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~-~t~~~li~~~~~~g~~~~a~~  389 (441)
                                   ..|+.+-..|-..|+++.|++.+.+.+.  +.|.. ..++.|-..|-..|++.+|.+
T Consensus       410 ~YkealrI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~--~nPt~AeAhsNLasi~kDsGni~~AI~  477 (966)
T KOG4626|consen  410 CYKEALRIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQ--INPTFAEAHSNLASIYKDSGNIPEAIQ  477 (966)
T ss_pred             HHHHHHhcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHh--cCcHHHHHHhhHHHHhhccCCcHHHHH
Confidence                         3344444555555555555555554442  23332 345555555556666666544

>TIGR00540 hemY_coli hemY protein

Probab=99.36  E-value=2.4e-09  Score=102.62  Aligned_cols=292  Identities=9%  Similarity=-0.037  Sum_probs=202.4

Q ss_pred             CChHHHHHHHhhhhhHhhhhcCCCCCCHH-HHHHHHHHHHcCCChhHHHHHHHHHHHhcCCCccHHHHHHHHhhcCHHHH
Q 036107          103 PSPDKVVEALKCFCFTWAKTQTGYMHTPE-TYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAM  181 (441)
Q Consensus       103 ~~~g~~~~A~~~~~~~~~~~~~g~~p~~~-~y~~li~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~  181 (441)
                      ...|++..|.+.+..     .....|++. .|-..-.+..+.|+.+.|.+.+.+..+..+..             +...-
T Consensus        95 ~~~g~~~~A~~~l~~-----~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~-------------~l~~~  156 (409)
T TIGR00540        95 LAEGDYAKAEKLIAK-----NADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGND-------------NILVE  156 (409)
T ss_pred             HhCCCHHHHHHHHHH-----HhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcC-------------chHHH
Confidence            456788888887732     223446544 34444567778899999999999987643111             12233


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHhhhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHH---H
Q 036107          182 SVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHY---C  258 (441)
Q Consensus       182 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~---~  258 (441)
                      ......+...|+++.|.+.++.+.+..+-+..+...+...+...|++++|.+++..+.+.++.++...-..-..++   .
T Consensus       157 ~~~a~l~l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l  236 (409)
T TIGR00540       157 IARTRILLAQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLL  236 (409)
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Confidence            3457778889999999999999976666677889999999999999999999999999987543332212222222   2


Q ss_pred             hcCCHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCccch
Q 036107          259 REKDFRKVDYTLKEMQEKGC---KPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLI  335 (441)
Q Consensus       259 ~~g~~~~a~~l~~~m~~~g~---~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~  335 (441)
                      ..+..++..+.+..+.+...   +.+...+..+...+...|+.++|.+++++..+.........+               
T Consensus       237 ~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~---------------  301 (409)
T TIGR00540       237 DEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISL---------------  301 (409)
T ss_pred             HHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchh---------------
Confidence            33333334445555554321   237888899999999999999999999999886432211100               


Q ss_pred             HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHH---HHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 036107          336 YNTMISSACVRSEEGNALKLRQKIEEDSCKPDCE---THARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKML  412 (441)
Q Consensus       336 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~---t~~~li~~~~~~g~~~~a~~~~~~~~~m~~~~~~p~~~~~~~l  412 (441)
                      ...........++.+.+++.+++..+.  .|+..   ...++-..|.+.|++++|.+   .|+........|+...+..+
T Consensus       302 ~~l~~~~~l~~~~~~~~~~~~e~~lk~--~p~~~~~~ll~sLg~l~~~~~~~~~A~~---~le~a~a~~~~p~~~~~~~L  376 (409)
T TIGR00540       302 PLCLPIPRLKPEDNEKLEKLIEKQAKN--VDDKPKCCINRALGQLLMKHGEFIEAAD---AFKNVAACKEQLDANDLAMA  376 (409)
T ss_pred             HHHHHhhhcCCCChHHHHHHHHHHHHh--CCCChhHHHHHHHHHHHHHcccHHHHHH---HHHHhHHhhcCCCHHHHHHH
Confidence            111122223456778888888776643  44444   45577788899999999988   45532233468999999999


Q ss_pred             HHHHHhcCCccHHHHHHHHH
Q 036107          413 AEELEKKSLGNAKERIDELL  432 (441)
Q Consensus       413 l~~~~~~g~~~~a~~~~~~m  432 (441)
                      ...+.+.|+.++|.+++++-
T Consensus       377 a~ll~~~g~~~~A~~~~~~~  396 (409)
T TIGR00540       377 ADAFDQAGDKAEAAAMRQDS  396 (409)
T ss_pred             HHHHHHcCCHHHHHHHHHHH
Confidence            99999999999999999874

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.35  E-value=6.4e-10  Score=104.50  Aligned_cols=213  Identities=13%  Similarity=0.106  Sum_probs=147.7

Q ss_pred             HHHHHHHHHHHHcCCChhHHHHHHHHHHHhcCCCccHHHHHHHHhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCC
Q 036107          130 PETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCIS  209 (441)
Q Consensus       130 ~~~y~~li~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~  209 (441)
                      ...+..+-..|-..|+++.|+..+++..+..+.+              +..|+.|-.++-..|++.+|.+.|++.-.-.+
T Consensus       286 A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F--------------~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p  351 (966)
T KOG4626|consen  286 AVAHGNLACIYYEQGLLDLAIDTYKRALELQPNF--------------PDAYNNLANALKDKGSVTEAVDCYNKALRLCP  351 (966)
T ss_pred             hhhccceEEEEeccccHHHHHHHHHHHHhcCCCc--------------hHHHhHHHHHHHhccchHHHHHHHHHHHHhCC
Confidence            3455566666666666666666666666644333              36777788888888888888887777644334


Q ss_pred             CcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC-HhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHH
Q 036107          210 LSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPD-GVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPS-VITCTI  287 (441)
Q Consensus       210 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~-~~~~~~  287 (441)
                      -.....+.|-+.|...|.+++|..+|....+  +.|. ...++.|-..|-+.|++++|...+++...  ++|+ ...|+.
T Consensus       352 ~hadam~NLgni~~E~~~~e~A~~ly~~al~--v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr--I~P~fAda~~N  427 (966)
T KOG4626|consen  352 NHADAMNNLGNIYREQGKIEEATRLYLKALE--VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALR--IKPTFADALSN  427 (966)
T ss_pred             ccHHHHHHHHHHHHHhccchHHHHHHHHHHh--hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh--cCchHHHHHHh
Confidence            4455677777778888888888888777665  3344 34677777777788888888888877655  4555 467777


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCccchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC
Q 036107          288 VMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPD  367 (441)
Q Consensus       288 ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~  367 (441)
                      +-..|-..|+++.|.+.+.+.+..+  |.-.               ..++.|-+.|-..|++.+|+.-+++...  ++||
T Consensus       428 mGnt~ke~g~v~~A~q~y~rAI~~n--Pt~A---------------eAhsNLasi~kDsGni~~AI~sY~~aLk--lkPD  488 (966)
T KOG4626|consen  428 MGNTYKEMGDVSAAIQCYTRAIQIN--PTFA---------------EAHSNLASIYKDSGNIPEAIQSYRTALK--LKPD  488 (966)
T ss_pred             cchHHHHhhhHHHHHHHHHHHHhcC--cHHH---------------HHHhhHHHHhhccCCcHHHHHHHHHHHc--cCCC
Confidence            7777888888888887777776643  3211               3488999999999999999999998764  4666


Q ss_pred             HH-HHHHHHHHHH
Q 036107          368 CE-THARSLKMCC  379 (441)
Q Consensus       368 ~~-t~~~li~~~~  379 (441)
                      .. .|..++.+.-
T Consensus       489 fpdA~cNllh~lq  501 (966)
T KOG4626|consen  489 FPDAYCNLLHCLQ  501 (966)
T ss_pred             CchhhhHHHHHHH
Confidence            53 4555555443

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=99.35  E-value=9.8e-12  Score=113.13  Aligned_cols=260  Identities=14%  Similarity=0.098  Sum_probs=105.7

Q ss_pred             HHHHHHHcCCChhHHHHHHHH-HHHhcCCCccHHHHHHHHhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcHH
Q 036107          135 AMVEALGKSKKFGLMWELVKE-IDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQ  213 (441)
Q Consensus       135 ~li~~~~~~~~~~~a~~l~~~-m~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~  213 (441)
                      .+-..+.+.|++++|+++++. .....  .+.           |..-|..+.......++.+.|.+.++++-..-+-+..
T Consensus        13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~--~~~-----------~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~   79 (280)
T PF13429_consen   13 RLARLLYQRGDYEKALEVLKKAAQKIA--PPD-----------DPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQ   79 (280)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ccccccccccccccccccccccccccc--ccc-----------ccccccccccccccccccccccccccccccccccccc
Confidence            446677889999999999965 33320  111           5566666666777789999999999998543333566


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHH
Q 036107          214 IFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKG-CKPSVITCTIVMHAL  292 (441)
Q Consensus       214 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g-~~p~~~~~~~ll~~~  292 (441)
                      .+..++.. ...+++++|.+++++..+..  ++...+..++..+.+.++++++.++++...+.. .+.+...|..+...+
T Consensus        80 ~~~~l~~l-~~~~~~~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~  156 (280)
T PF13429_consen   80 DYERLIQL-LQDGDPEEALKLAEKAYERD--GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIY  156 (280)
T ss_dssp             -----------------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHH
T ss_pred             cccccccc-cccccccccccccccccccc--cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHH
Confidence            68888887 78999999999998876643  677778889999999999999999999987543 456788889999999


Q ss_pred             HhcCCHHHHHHHHHHHhhCCCCCC-HHHHHHHHHHHHhcCccchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHH
Q 036107          293 EKAKQIYEALKVYEKMKSDDCLTD-TSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETH  371 (441)
Q Consensus       293 ~~~~~~~~a~~~~~~m~~~g~~~~-~~~~~~li~~~~~~g~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~  371 (441)
                      .+.|+.++|.+.+++..+.  .|+ ...                .+.++..+...|+.+++.++++...... ..|...+
T Consensus       157 ~~~G~~~~A~~~~~~al~~--~P~~~~~----------------~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~  217 (280)
T PF13429_consen  157 EQLGDPDKALRDYRKALEL--DPDDPDA----------------RNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLW  217 (280)
T ss_dssp             HHCCHHHHHHHHHHHHHHH---TT-HHH----------------HHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHC
T ss_pred             HHcCCHHHHHHHHHHHHHc--CCCCHHH----------------HHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHH
Confidence            9999999999999999886  343 333                6777778888888899989998887654 4455567


Q ss_pred             HHHHHHHHhcCChhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCccHHHHHHHHHH
Q 036107          372 ARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEKKSLGNAKERIDELLT  433 (441)
Q Consensus       372 ~~li~~~~~~g~~~~a~~~~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~  433 (441)
                      ..+..++...|+.++|...++   +... -.+.|......+.+++...|+.++|.++....-
T Consensus       218 ~~la~~~~~lg~~~~Al~~~~---~~~~-~~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~  275 (280)
T PF13429_consen  218 DALAAAYLQLGRYEEALEYLE---KALK-LNPDDPLWLLAYADALEQAGRKDEALRLRRQAL  275 (280)
T ss_dssp             HHHHHHHHHHT-HHHHHHHHH---HHHH-HSTT-HHHHHHHHHHHT----------------
T ss_pred             HHHHHHhcccccccccccccc---cccc-ccccccccccccccccccccccccccccccccc
Confidence            888999999999999977444   4322 234478889999999999999999999887654

>PRK14574 hmsH outer membrane protein; Provisional

Probab=99.35  E-value=5.9e-09  Score=106.48  Aligned_cols=173  Identities=9%  Similarity=0.031  Sum_probs=90.7

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCC-----CCCCHHHHHHHHHHHH
Q 036107          254 IEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDD-----CLTDTSFYSSLIFILS  328 (441)
Q Consensus       254 i~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g-----~~~~~~~~~~li~~~~  328 (441)
                      +-++...|+..++.+.|+.|...|.+.-..+-..+.++|...+++++|..++..+....     ..++......|.-+|.
T Consensus       299 l~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~l  378 (822)
T PRK14574        299 LGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLN  378 (822)
T ss_pred             HHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHH
Confidence            33444555555555555555555544333455555555555555555555555553321     1112212222333333


Q ss_pred             hcCcc---------------------------------chHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHH
Q 036107          329 KAVRF---------------------------------LIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSL  375 (441)
Q Consensus       329 ~~g~~---------------------------------~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li  375 (441)
                      ..++.                                 ..+..++..+...|+..+|++.++++.... .-|......+-
T Consensus       379 d~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~a-P~n~~l~~~~A  457 (822)
T PRK14574        379 ESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTA-PANQNLRIALA  457 (822)
T ss_pred             hcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence            33322                                 223345566667777777777777775432 44555666666


Q ss_pred             HHHHhcCChhhHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCccHHHHHHHHH
Q 036107          376 KMCCHKKRMKDGMLVLNLMREMLSKGIVPQ-ESTHKMLAEELEKKSLGNAKERIDELL  432 (441)
Q Consensus       376 ~~~~~~g~~~~a~~~~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~m  432 (441)
                      ..+...|.+.+|++.   ++...  .+.|+ ..+......++...|++++|+++.+.+
T Consensus       458 ~v~~~Rg~p~~A~~~---~k~a~--~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l  510 (822)
T PRK14574        458 SIYLARDLPRKAEQE---LKAVE--SLAPRSLILERAQAETAMALQEWHQMELLTDDV  510 (822)
T ss_pred             HHHHhcCCHHHHHHH---HHHHh--hhCCccHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence            667777777777663   32321  22333 445566666666777777777666544

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=99.32  E-value=2e-08  Score=104.04  Aligned_cols=346  Identities=9%  Similarity=0.003  Sum_probs=233.5

Q ss_pred             chhhHHHhhhhchhhHHHHHhhhcCchhhHHHHHHHHHhcCCChHHHHHHHhhhhhHhhhhcCCCCCCHHHHHHHHHHHH
Q 036107           62 SLASWVESLKLNEQSRISSHALSEDHETDVDKVSEILRKRYPSPDKVVEALKCFCFTWAKTQTGYMHTPETYNAMVEALG  141 (441)
Q Consensus        62 ~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~g~~p~~~~y~~li~~~~  141 (441)
                      -+....-.|+.+.+..++.......  +....+...+...+.+.|++++|+++++.....    ...+...+..+...+.
T Consensus        21 ~~~ia~~~g~~~~A~~~~~~~~~~~--~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~----~P~~~~a~~~la~~l~   94 (765)
T PRK10049         21 WLQIALWAGQDAEVITVYNRYRVHM--QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSL----EPQNDDYQRGLILTLA   94 (765)
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHhhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHH
Confidence            3556667788889988887776633  443367888888999999999999998533222    1234667888888999


Q ss_pred             cCCChhHHHHHHHHHHHhcCCCccHHHHHHHHhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcHHHHHHHHHH
Q 036107          142 KSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHG  221 (441)
Q Consensus       142 ~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~  221 (441)
                      +.|++++|...+++..+..+.              +.. +..+..++...|+.++|+..+++.-...+.+...+..+...
T Consensus        95 ~~g~~~eA~~~l~~~l~~~P~--------------~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~  159 (765)
T PRK10049         95 DAGQYDEALVKAKQLVSGAPD--------------KAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQA  159 (765)
T ss_pred             HCCCHHHHHHHHHHHHHhCCC--------------CHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            999999999999999885422              556 88888899999999999999999866556677777778888


Q ss_pred             HHhcCCHHHHHHHHHHHhhCCCCCCH------hhHHHHHHHHH-----hcCCH---HHHHHHHHHHHHc-CCCCCHH-HH
Q 036107          222 WCKTRKSDYAQKAMKEMFQHGFSPDG------VSYTCFIEHYC-----REKDF---RKVDYTLKEMQEK-GCKPSVI-TC  285 (441)
Q Consensus       222 ~~~~~~~~~a~~~~~~m~~~g~~p~~------~~~~~li~~~~-----~~g~~---~~a~~l~~~m~~~-g~~p~~~-~~  285 (441)
                      +...+..+.|++.++....   .|+.      .....++....     ..+++   ++|++.++.+.+. ...|+.. .+
T Consensus       160 l~~~~~~e~Al~~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~  236 (765)
T PRK10049        160 LRNNRLSAPALGAIDDANL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADY  236 (765)
T ss_pred             HHHCCChHHHHHHHHhCCC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHH
Confidence            8899999999999987664   2332      01122222222     22234   7788888888754 2333321 11


Q ss_pred             ----HHHHHHHHhcCCHHHHHHHHHHHhhCCCC-CCHHHHHHHHHHHHhcCcc----------------------chHHH
Q 036107          286 ----TIVMHALEKAKQIYEALKVYEKMKSDDCL-TDTSFYSSLIFILSKAVRF----------------------LIYNT  338 (441)
Q Consensus       286 ----~~ll~~~~~~~~~~~a~~~~~~m~~~g~~-~~~~~~~~li~~~~~~g~~----------------------~~~~~  338 (441)
                          ...+.++...|++++|...|+.+.+.+-. |+. .-..+..+|...|+.                      .....
T Consensus       237 ~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~  315 (765)
T PRK10049        237 QRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELAD  315 (765)
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHH
Confidence                11144556779999999999999987632 332 112234456666655                      01233


Q ss_pred             HHHHHHhcCChhHHHHHHHHHHHcC-----------CCCCH---HHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCCC
Q 036107          339 MISSACVRSEEGNALKLRQKIEEDS-----------CKPDC---ETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVP  404 (441)
Q Consensus       339 li~~~~~~g~~~~a~~~~~~m~~~g-----------~~p~~---~t~~~li~~~~~~g~~~~a~~~~~~~~~m~~~~~~p  404 (441)
                      +..++...|++++|..+++.+.+..           -.|+.   ..+..+...+...|+.++|.+   .++++... .+-
T Consensus       316 L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~---~l~~al~~-~P~  391 (765)
T PRK10049        316 LFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEM---RARELAYN-APG  391 (765)
T ss_pred             HHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHH---HHHHHHHh-CCC
Confidence            4446677788888888888876541           12332   234455667777788888866   44444322 333


Q ss_pred             CHHHHHHHHHHHHhcCCccHHHHHHHHHHHHh
Q 036107          405 QESTHKMLAEELEKKSLGNAKERIDELLTHAT  436 (441)
Q Consensus       405 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~  436 (441)
                      +...+..+...+...|+.++|++.++......
T Consensus       392 n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~  423 (765)
T PRK10049        392 NQGLRIDYASVLQARGWPRAAENELKKAEVLE  423 (765)
T ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC
Confidence            45677777777888888888888888765543

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=99.31  E-value=5.8e-09  Score=99.53  Aligned_cols=278  Identities=8%  Similarity=0.009  Sum_probs=206.4

Q ss_pred             hhhhchhhHHHHHhhhcCchhhHHHHHHHHH-hcCCChHHHHHHHhhhhhHhhhhcCCCCCCHHHHH--HHHHHHHcCCC
Q 036107           69 SLKLNEQSRISSHALSEDHETDVDKVSEILR-KRYPSPDKVVEALKCFCFTWAKTQTGYMHTPETYN--AMVEALGKSKK  145 (441)
Q Consensus        69 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~-~~~~~~g~~~~A~~~~~~~~~~~~~g~~p~~~~y~--~li~~~~~~~~  145 (441)
                      .|+++.|++......+.+-.|.   ++-.+. ....+.|+.+.|.+.+....     ...|+...+.  .....+...|+
T Consensus        97 eGd~~~A~k~l~~~~~~~~~p~---l~~llaA~aA~~~g~~~~A~~~l~~A~-----~~~~~~~~~~~l~~a~l~l~~g~  168 (398)
T PRK10747         97 EGDYQQVEKLMTRNADHAEQPV---VNYLLAAEAAQQRGDEARANQHLERAA-----ELADNDQLPVEITRVRIQLARNE  168 (398)
T ss_pred             CCCHHHHHHHHHHHHhcccchH---HHHHHHHHHHHHCCCHHHHHHHHHHHH-----hcCCcchHHHHHHHHHHHHHCCC
Confidence            4778888877665544433333   333443 44478899999999885332     3345654333  33568889999


Q ss_pred             hhHHHHHHHHHHHhcCCCccHHHHHHHHhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcHH--------HHHH
Q 036107          146 FGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQ--------IFDV  217 (441)
Q Consensus       146 ~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~--------~~~~  217 (441)
                      ++.|.+.++++.+..|.              ++.....+...|.+.|++++|.+++..+.+....+..        +|..
T Consensus       169 ~~~Al~~l~~~~~~~P~--------------~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~  234 (398)
T PRK10747        169 NHAARHGVDKLLEVAPR--------------HPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIG  234 (398)
T ss_pred             HHHHHHHHHHHHhcCCC--------------CHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence            99999999999886533              6789999999999999999999999999653332322        3344


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 036107          218 LIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQ  297 (441)
Q Consensus       218 li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~  297 (441)
                      ++....+..+.+...++++++.+. .+.++.....+..++...|+.++|.+++++..+.  .||..  -.++.+....++
T Consensus       235 l~~~~~~~~~~~~l~~~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~--l~~l~~~l~~~~  309 (398)
T PRK10747        235 LMDQAMADQGSEGLKRWWKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDER--LVLLIPRLKTNN  309 (398)
T ss_pred             HHHHHHHhcCHHHHHHHHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHH--HHHHHhhccCCC
Confidence            455455556677788888887643 3457888999999999999999999999998874  44442  223444456699


Q ss_pred             HHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCccchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 036107          298 IYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKM  377 (441)
Q Consensus       298 ~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~  377 (441)
                      .+++.+..+...+..  |+...               .+..+-..+.+.|++++|.+.|+...+.  .|+..++..+-..
T Consensus       310 ~~~al~~~e~~lk~~--P~~~~---------------l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~  370 (398)
T PRK10747        310 PEQLEKVLRQQIKQH--GDTPL---------------LWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADA  370 (398)
T ss_pred             hHHHHHHHHHHHhhC--CCCHH---------------HHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHH
Confidence            999999999988753  33321               2677778889999999999999999864  7999999999999


Q ss_pred             HHhcCChhhHHHHHH
Q 036107          378 CCHKKRMKDGMLVLN  392 (441)
Q Consensus       378 ~~~~g~~~~a~~~~~  392 (441)
                      +.+.|+.++|.++++
T Consensus       371 ~~~~g~~~~A~~~~~  385 (398)
T PRK10747        371 LDRLHKPEEAAAMRR  385 (398)
T ss_pred             HHHcCCHHHHHHHHH
Confidence            999999999987555

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=99.31  E-value=1.8e-11  Score=111.35  Aligned_cols=258  Identities=10%  Similarity=0.023  Sum_probs=107.6

Q ss_pred             HHHhcCCChHHHHHHHhhhhhHhhhhcCCCCC-CHHHHHHHHHHHHcCCChhHHHHHHHHHHHhcCCCccHHHHHHHHhh
Q 036107           97 ILRKRYPSPDKVVEALKCFCFTWAKTQTGYMH-TPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRR  175 (441)
Q Consensus        97 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~g~~p-~~~~y~~li~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~  175 (441)
                      .+...+.+.|+++.|+++++...   ...-.| |...|..+-......++++.|.+.++++...++.             
T Consensus        13 ~~A~~~~~~~~~~~Al~~L~~~~---~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-------------   76 (280)
T PF13429_consen   13 RLARLLYQRGDYEKALEVLKKAA---QKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-------------   76 (280)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ccccccccccccccccccccccc---ccccccccccccccccccccccccccccccccccccccccc-------------
Confidence            34678889999999999983111   111123 3445555555666778999999999999886522             


Q ss_pred             cCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC-CCCCCHhhHHHHH
Q 036107          176 LDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQH-GFSPDGVSYTCFI  254 (441)
Q Consensus       176 ~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-g~~p~~~~~~~li  254 (441)
                       ++..+..++.. ...+++++|.+++...-+. .++...+..++..+.+.++++++.++++..... ..+++...|..+.
T Consensus        77 -~~~~~~~l~~l-~~~~~~~~A~~~~~~~~~~-~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a  153 (280)
T PF13429_consen   77 -NPQDYERLIQL-LQDGDPEEALKLAEKAYER-DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALA  153 (280)
T ss_dssp             --------------------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHH
T ss_pred             -ccccccccccc-ccccccccccccccccccc-ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHH
Confidence             45567777777 7899999999998765221 255666888889999999999999999997753 2456778888888


Q ss_pred             HHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCccc
Q 036107          255 EHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFL  334 (441)
Q Consensus       255 ~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~  334 (441)
                      ..+.+.|+.++|.+.+++..+.... |....+.++..+...|+.+++.+++....+.. +.|.                .
T Consensus       154 ~~~~~~G~~~~A~~~~~~al~~~P~-~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~----------------~  215 (280)
T PF13429_consen  154 EIYEQLGDPDKALRDYRKALELDPD-DPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDP----------------D  215 (280)
T ss_dssp             HHHHHCCHHHHHHHHHHHHHHH-TT--HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSC----------------C
T ss_pred             HHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHH----------------H
Confidence            9999999999999999999886322 57778889999999999999999988887753 2222                2


Q ss_pred             hHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHH
Q 036107          335 IYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLN  392 (441)
Q Consensus       335 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~  392 (441)
                      .|..+..+|...|+.++|+..|++..... ..|..+...+..++...|+.++|.++..
T Consensus       216 ~~~~la~~~~~lg~~~~Al~~~~~~~~~~-p~d~~~~~~~a~~l~~~g~~~~A~~~~~  272 (280)
T PF13429_consen  216 LWDALAAAYLQLGRYEEALEYLEKALKLN-PDDPLWLLAYADALEQAGRKDEALRLRR  272 (280)
T ss_dssp             HCHHHHHHHHHHT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHT-------------
T ss_pred             HHHHHHHHhcccccccccccccccccccc-cccccccccccccccccccccccccccc
Confidence            27888889999999999999999987642 4477778888899999999999977543

>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]

Probab=99.30  E-value=1.1e-09  Score=106.83  Aligned_cols=240  Identities=10%  Similarity=0.068  Sum_probs=158.6

Q ss_pred             HhhhhcCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHhcCCCccHHHHHHHHhhc------------CHHHHHHHH
Q 036107          118 TWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRL------------DTRAMSVLM  185 (441)
Q Consensus       118 ~~~~~~~g~~p~~~~y~~li~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~------------~~~~~~~li  185 (441)
                      .-.+...|+.|+.+||..+|.-||..|+.+.|- +|.-|+... .++....+...+...            ...+|..|.
T Consensus        13 la~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ks-Lpv~e~vf~~lv~sh~~And~Enpkep~aDtyt~Ll   90 (1088)
T KOG4318|consen   13 LALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKS-LPVREGVFRGLVASHKEANDAENPKEPLADTYTNLL   90 (1088)
T ss_pred             HHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhccc-ccccchhHHHHHhcccccccccCCCCCchhHHHHHH
Confidence            345567799999999999999999999999888 888887754 666666666665552            668888899


Q ss_pred             HHHHhcCCHHHHHHHHHH-hh--------hCCC-CcHHH-------------HHHHHHHHHhcCCHHHHHHHHHHHhhCC
Q 036107          186 DTLVKRNSVAHAYKVFLK-FK--------DCIS-LSSQI-------------FDVLIHGWCKTRKSDYAQKAMKEMFQHG  242 (441)
Q Consensus       186 ~~~~~~g~~~~a~~~~~~-~~--------~~~~-~~~~~-------------~~~li~~~~~~~~~~~a~~~~~~m~~~g  242 (441)
                      .+|...||+.. ++..++ +.        .|+. |....             -..+|.-..-.|.++.+++++..|....
T Consensus        91 ~ayr~hGDli~-fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllkll~~~Pvsa  169 (1088)
T KOG4318|consen   91 KAYRIHGDLIL-FEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLKLLAKVPVSA  169 (1088)
T ss_pred             HHHHhccchHH-HHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHhhCCccc
Confidence            99988888765 222222 21        1111 11110             1123333344455555555555554321


Q ss_pred             CCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHH
Q 036107          243 FSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSS  322 (441)
Q Consensus       243 ~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~  322 (441)
                      ..-   ++-.+|.-+....  .-..++....+.-.-.|+..+|.+++++-.-+|+.+.|..++.+|++.|++.+.+-   
T Consensus       170 ~~~---p~~vfLrqnv~~n--tpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~Hy---  241 (1088)
T KOG4318|consen  170 WNA---PFQVFLRQNVVDN--TPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHY---  241 (1088)
T ss_pred             ccc---hHHHHHHHhccCC--chHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCccccc---
Confidence            111   1111243333322  23333333333221158999999999999999999999999999999999888765   


Q ss_pred             HHHHHHhcCccchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCh
Q 036107          323 LIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRM  384 (441)
Q Consensus       323 li~~~~~~g~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~  384 (441)
                                   |..++-+   .++...++.+++.|.+.|+.|+..|+...+..+.+.|..
T Consensus       242 -------------FwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t  287 (1088)
T KOG4318|consen  242 -------------FWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQT  287 (1088)
T ss_pred             -------------chhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhh
Confidence                         4444444   777888999999999999999999999888888775543

>PRK14574 hmsH outer membrane protein; Provisional

Probab=99.29  E-value=1.7e-08  Score=103.21  Aligned_cols=277  Identities=10%  Similarity=0.043  Sum_probs=181.9

Q ss_pred             HHHcCCChhHHHHHHHHHHHhcCCCccHHHHHHHHhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcHHHHHHH
Q 036107          139 ALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVL  218 (441)
Q Consensus       139 ~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l  218 (441)
                      ...+.|+++.|++.|++..+..+..+             ...+ .++..+...|+.++|+..+++............-.+
T Consensus        43 i~~r~Gd~~~Al~~L~qaL~~~P~~~-------------~av~-dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llal  108 (822)
T PRK14574         43 IRARAGDTAPVLDYLQEESKAGPLQS-------------GQVD-DWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASA  108 (822)
T ss_pred             HHHhCCCHHHHHHHHHHHHhhCccch-------------hhHH-HHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHH
Confidence            46678899999999999887553321             1222 566666666777777777776652122223233333


Q ss_pred             HHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH
Q 036107          219 IHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQI  298 (441)
Q Consensus       219 i~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~  298 (441)
                      ...|...|++++|.++|+++.+... -+...+..++..+...++.++|++.++.+...  .|+...+..++..+...++.
T Consensus       109 A~ly~~~gdyd~Aiely~kaL~~dP-~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~  185 (822)
T PRK14574        109 ARAYRNEKRWDQALALWQSSLKKDP-TNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRN  185 (822)
T ss_pred             HHHHHHcCCHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchH
Confidence            4566667777777777777776431 23455556666777777777777777777554  34444443333333334555


Q ss_pred             HHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCcc---------------------------------------------
Q 036107          299 YEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRF---------------------------------------------  333 (441)
Q Consensus       299 ~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~---------------------------------------------  333 (441)
                      .+|.+.++++.+.. +-+...+..++.++.+.|-.                                             
T Consensus       186 ~~AL~~~ekll~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~  264 (822)
T PRK14574        186 YDALQASSEAVRLA-PTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERF  264 (822)
T ss_pred             HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhH
Confidence            55777777776653 22444555555555555544                                             


Q ss_pred             ----------------------------chHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChh
Q 036107          334 ----------------------------LIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMK  385 (441)
Q Consensus       334 ----------------------------~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~  385 (441)
                                                  ...--.+-++...|+..++++.|+.|...|...-..+-..+.++|...++++
T Consensus       265 ~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~  344 (822)
T PRK14574        265 DIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPE  344 (822)
T ss_pred             HHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcH
Confidence                                        1111346677888999999999999999887655668889999999999999


Q ss_pred             hHHHHHHHHHHHHHCC----CCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHH
Q 036107          386 DGMLVLNLMREMLSKG----IVPQESTHKMLAEELEKKSLGNAKERIDELLTHA  435 (441)
Q Consensus       386 ~a~~~~~~~~~m~~~~----~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~  435 (441)
                      +|..+++.+-.  ..+    ..++......|.-++...+++++|..+++.+.+.
T Consensus       345 kA~~l~~~~~~--~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~  396 (822)
T PRK14574        345 KAAPILSSLYY--SDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQ  396 (822)
T ss_pred             HHHHHHHHHhh--ccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhc
Confidence            99885543322  221    2334445688999999999999999999999874

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=99.23  E-value=1.1e-07  Score=99.39  Aligned_cols=258  Identities=8%  Similarity=-0.009  Sum_probs=146.7

Q ss_pred             CHHHHHHHHHHHHcCCChhHHHHHHHHHHHhcCCCccHHHHHHHHhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCC
Q 036107          129 TPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCI  208 (441)
Q Consensus       129 ~~~~y~~li~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~  208 (441)
                      +...|..+-.++.. ++.++|...+.+.....               |+......+...+...|++++|...|+++... 
T Consensus       476 ~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~---------------Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~-  538 (987)
T PRK09782        476 DAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQ---------------PDAWQHRAVAYQAYQVEDYATALAAWQKISLH-  538 (987)
T ss_pred             CHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhC---------------CchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc-
Confidence            34555555555554 66666777666655432               12222223334445677777777777766332 


Q ss_pred             CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 036107          209 SLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIV  288 (441)
Q Consensus       209 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~l  288 (441)
                      .|+...+..+...+.+.|++++|.+.|++..+.. +.+...+..+.....+.|++++|...+++..+.  .|+...|..+
T Consensus       539 ~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l--~P~~~a~~~L  615 (987)
T PRK09782        539 DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG-LGDNALYWWLHAQRYIPGQPELALNDLTRSLNI--APSANAYVAR  615 (987)
T ss_pred             CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCCHHHHHHH
Confidence            3333445555666677777777777777776643 112222223333334457777777777777654  3456667777


Q ss_pred             HHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCccchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC-C
Q 036107          289 MHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKP-D  367 (441)
Q Consensus       289 l~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~  367 (441)
                      ..++.+.|++++|...+++..+..  |+...               .++.+-..+...|+.++|+..+++..+.  .| +
T Consensus       616 A~~l~~lG~~deA~~~l~~AL~l~--Pd~~~---------------a~~nLG~aL~~~G~~eeAi~~l~~AL~l--~P~~  676 (987)
T PRK09782        616 ATIYRQRHNVPAAVSDLRAALELE--PNNSN---------------YQAALGYALWDSGDIAQSREMLERAHKG--LPDD  676 (987)
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHhC--CCCHH---------------HHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCC
Confidence            777777777777777777776653  33221               2666666677777777777777776653  33 3


Q ss_pred             HHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCccHHHHHHH
Q 036107          368 CETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQE-STHKMLAEELEKKSLGNAKERIDE  430 (441)
Q Consensus       368 ~~t~~~li~~~~~~g~~~~a~~~~~~~~~m~~~~~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~  430 (441)
                      ...+..+-.++...|++++|..   .+++..+  ..|+. .+....-....+..+++.+.+-++
T Consensus       677 ~~a~~nLA~al~~lGd~~eA~~---~l~~Al~--l~P~~a~i~~~~g~~~~~~~~~~~a~~~~~  735 (987)
T PRK09782        677 PALIRQLAYVNQRLDDMAATQH---YARLVID--DIDNQALITPLTPEQNQQRFNFRRLHEEVG  735 (987)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHH---HHHHHHh--cCCCCchhhhhhhHHHHHHHHHHHHHHHHH
Confidence            3456666677777777777766   3333221  33433 233333333344444444444433

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.23  E-value=1.1e-07  Score=86.90  Aligned_cols=295  Identities=13%  Similarity=0.042  Sum_probs=211.7

Q ss_pred             hcCCChHHHHHHHhhhhhHhhhhcCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHhcCCCccHHHHHHHHhhcCHH
Q 036107          100 KRYPSPDKVVEALKCFCFTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTR  179 (441)
Q Consensus       100 ~~~~~~g~~~~A~~~~~~~~~~~~~g~~p~~~~y~~li~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~  179 (441)
                      .++......+++++-.   +.....|+.-+...-+..-.+.-...+++.|+.+|+++.+..|--..           |..
T Consensus       235 ~a~~el~q~~e~~~k~---e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~-----------dmd  300 (559)
T KOG1155|consen  235 KAYQELHQHEEALQKK---ERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLD-----------DMD  300 (559)
T ss_pred             HHHHHHHHHHHHHHHH---HHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcch-----------hHH
Confidence            4444444566666554   44445566555544444444556678999999999999996532222           778


Q ss_pred             HHHHHHHHHHhcCCHH-HHHHHHHHhhhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHH
Q 036107          180 AMSVLMDTLVKRNSVA-HAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYC  258 (441)
Q Consensus       180 ~~~~li~~~~~~g~~~-~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~  258 (441)
                      +|+.++-.--.+.++. .|..+++.  +.++|  .|+.++-+-|+-.++.++|...|+...+.+- .....|+.|-+-|.
T Consensus       301 lySN~LYv~~~~skLs~LA~~v~~i--dKyR~--ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp-~~~~aWTLmGHEyv  375 (559)
T KOG1155|consen  301 LYSNVLYVKNDKSKLSYLAQNVSNI--DKYRP--ETCCIIANYYSLRSEHEKAVMYFKRALKLNP-KYLSAWTLMGHEYV  375 (559)
T ss_pred             HHhHHHHHHhhhHHHHHHHHHHHHh--ccCCc--cceeeehhHHHHHHhHHHHHHHHHHHHhcCc-chhHHHHHhhHHHH
Confidence            8888776544433332 23333221  12333  4688888899999999999999999987531 24578999999999


Q ss_pred             hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCccchHHH
Q 036107          259 REKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNT  338 (441)
Q Consensus       259 ~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~~~  338 (441)
                      ..++...|.+-++...+-.. .|-..|-.|-++|.-.+.+.-|.-.|++..+.  +|+..               ..|.+
T Consensus       376 EmKNt~AAi~sYRrAvdi~p-~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~--kPnDs---------------Rlw~a  437 (559)
T KOG1155|consen  376 EMKNTHAAIESYRRAVDINP-RDYRAWYGLGQAYEIMKMHFYALYYFQKALEL--KPNDS---------------RLWVA  437 (559)
T ss_pred             HhcccHHHHHHHHHHHhcCc-hhHHHHhhhhHHHHHhcchHHHHHHHHHHHhc--CCCch---------------HHHHH
Confidence            99999999999999988643 48889999999999999999999999988874  45433               33999


Q ss_pred             HHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHH-HHHCCCCCC-H-HHHHHHHHH
Q 036107          339 MISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMRE-MLSKGIVPQ-E-STHKMLAEE  415 (441)
Q Consensus       339 li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~~~~-m~~~~~~p~-~-~~~~~ll~~  415 (441)
                      |-.+|.+.+++++|++.|......| ..+...+..|-+.|-+.++.++|.+.++.+.+ +...|..-+ . .....|..-
T Consensus       438 LG~CY~kl~~~~eAiKCykrai~~~-dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~  516 (559)
T KOG1155|consen  438 LGECYEKLNRLEEAIKCYKRAILLG-DTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEY  516 (559)
T ss_pred             HHHHHHHhccHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHH
Confidence            9999999999999999999988766 44778899999999999999999887775444 333454443 2 233335556


Q ss_pred             HHhcCCccHHHHHHHHH
Q 036107          416 LEKKSLGNAKERIDELL  432 (441)
Q Consensus       416 ~~~~g~~~~a~~~~~~m  432 (441)
                      +.+.+++++|.......
T Consensus       517 f~k~~~~~~As~Ya~~~  533 (559)
T KOG1155|consen  517 FKKMKDFDEASYYATLV  533 (559)
T ss_pred             HHhhcchHHHHHHHHHH
Confidence            67888888887754443

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=99.22  E-value=2.1e-08  Score=88.18  Aligned_cols=201  Identities=10%  Similarity=-0.005  Sum_probs=160.4

Q ss_pred             CHHHHHHHHHHHHcCCChhHHHHHHHHHHHhcCCCccHHHHHHHHhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCC
Q 036107          129 TPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCI  208 (441)
Q Consensus       129 ~~~~y~~li~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~  208 (441)
                      ....+..+...+...|++++|.+.+++..+..+.              +...+..+...+...|++++|.+.+++.....
T Consensus        30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~--------------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~   95 (234)
T TIGR02521        30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHDPD--------------DYLAYLALALYYQQLGELEKAEDSFRRALTLN   95 (234)
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc--------------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence            4567888889999999999999999998775422              56778888889999999999999998875544


Q ss_pred             CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC-CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 036107          209 SLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFS-PDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTI  287 (441)
Q Consensus       209 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~-p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~  287 (441)
                      +.+...+..+...+...|++++|.+.|++....... .....+..+...+...|++++|...+++..+... .+...+..
T Consensus        96 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~  174 (234)
T TIGR02521        96 PNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDP-QRPESLLE  174 (234)
T ss_pred             CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-CChHHHHH
Confidence            556677888889999999999999999999864322 2345677778889999999999999999877532 25667888


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCccchHHHHHHHHHhcCChhHHHHHHHHHHH
Q 036107          288 VMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEE  361 (441)
Q Consensus       288 ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  361 (441)
                      +...+...|++++|...+++..+. .+.+...                +..+...+...|+.++|..+.+.+..
T Consensus       175 la~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~----------------~~~~~~~~~~~~~~~~a~~~~~~~~~  231 (234)
T TIGR02521       175 LAELYYLRGQYKDARAYLERYQQT-YNQTAES----------------LWLGIRIARALGDVAAAQRYGAQLQK  231 (234)
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHH----------------HHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence            889999999999999999998876 2223332                55667777888888999988887754

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>TIGR00540 hemY_coli hemY protein

Probab=99.19  E-value=2.9e-08  Score=95.26  Aligned_cols=286  Identities=8%  Similarity=-0.021  Sum_probs=195.5

Q ss_pred             HhhhhchhhHHHHHhhhcCchhhHHHHHHHHHhcCCChHHHHHHHhhhhhHhhhhcCCCCCCHH--HHHHHHHHHHcCCC
Q 036107           68 ESLKLNEQSRISSHALSEDHETDVDKVSEILRKRYPSPDKVVEALKCFCFTWAKTQTGYMHTPE--TYNAMVEALGKSKK  145 (441)
Q Consensus        68 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~g~~p~~~--~y~~li~~~~~~~~  145 (441)
                      ..|+++.|........+....|..  .+-.....+.+.|+.+.|.+.+.....     ..|+..  .--+....+...|+
T Consensus        96 ~~g~~~~A~~~l~~~~~~~~~~~~--~~llaA~aa~~~g~~~~A~~~l~~a~~-----~~p~~~l~~~~~~a~l~l~~~~  168 (409)
T TIGR00540        96 AEGDYAKAEKLIAKNADHAAEPVL--NLIKAAEAAQQRGDEARANQHLEEAAE-----LAGNDNILVEIARTRILLAQNE  168 (409)
T ss_pred             hCCCHHHHHHHHHHHhhcCCCCHH--HHHHHHHHHHHCCCHHHHHHHHHHHHH-----hCCcCchHHHHHHHHHHHHCCC
Confidence            457888888888777665543332  222334667778999999998854321     124432  33345778888999


Q ss_pred             hhHHHHHHHHHHHhcCCCccHHHHHHHHhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcHHHHHH-HHHHH--
Q 036107          146 FGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDV-LIHGW--  222 (441)
Q Consensus       146 ~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~-li~~~--  222 (441)
                      ++.|.+.++.+.+..|.              ++.+...+...+...|+++.|.+.+..+.+...++...+.. -..++  
T Consensus       169 ~~~Al~~l~~l~~~~P~--------------~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~  234 (409)
T TIGR00540       169 LHAARHGVDKLLEMAPR--------------HKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIG  234 (409)
T ss_pred             HHHHHHHHHHHHHhCCC--------------CHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence            99999999999996533              67889999999999999999999999996532334333321 11111  


Q ss_pred             -HhcCCHHHHHHHHHHHhhCC---CCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH--HHhcC
Q 036107          223 -CKTRKSDYAQKAMKEMFQHG---FSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHA--LEKAK  296 (441)
Q Consensus       223 -~~~~~~~~a~~~~~~m~~~g---~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~--~~~~~  296 (441)
                       ...+..+...+.+..+.+..   .+.+...+..+...+...|+.++|.+++++..+.........+. ++..  ....+
T Consensus       235 ~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~-~l~~~~~l~~~  313 (409)
T TIGR00540       235 LLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLP-LCLPIPRLKPE  313 (409)
T ss_pred             HHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhH-HHHHhhhcCCC
Confidence             22222222233444443321   12378889999999999999999999999998853322111111 2232  23457


Q ss_pred             CHHHHHHHHHHHhhCCCCCCHH--HHHHHHHHHHhcCccchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHH
Q 036107          297 QIYEALKVYEKMKSDDCLTDTS--FYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARS  374 (441)
Q Consensus       297 ~~~~a~~~~~~m~~~g~~~~~~--~~~~li~~~~~~g~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l  374 (441)
                      +.+.+.+.++...+.  .|+..  .               ...++-..+.+.|++++|.+.|+........|+..++..+
T Consensus       314 ~~~~~~~~~e~~lk~--~p~~~~~~---------------ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~L  376 (409)
T TIGR00540       314 DNEKLEKLIEKQAKN--VDDKPKCC---------------INRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMA  376 (409)
T ss_pred             ChHHHHHHHHHHHHh--CCCChhHH---------------HHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHH
Confidence            788888888887764  33332  1               1456667788899999999999965554568999999999


Q ss_pred             HHHHHhcCChhhHHHHHH
Q 036107          375 LKMCCHKKRMKDGMLVLN  392 (441)
Q Consensus       375 i~~~~~~g~~~~a~~~~~  392 (441)
                      ...+.+.|+.++|.++++
T Consensus       377 a~ll~~~g~~~~A~~~~~  394 (409)
T TIGR00540       377 ADAFDQAGDKAEAAAMRQ  394 (409)
T ss_pred             HHHHHHcCCHHHHHHHHH
Confidence            999999999999988665

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=99.19  E-value=2.3e-07  Score=96.97  Aligned_cols=303  Identities=11%  Similarity=-0.032  Sum_probs=205.4

Q ss_pred             CCChHHHHHHHhhhhhHhhhhcCCCCCCHHHHHHHHHHHHcCCC---hhHHHHHHHHHHHh------c---CCCccHHHH
Q 036107          102 YPSPDKVVEALKCFCFTWAKTQTGYMHTPETYNAMVEALGKSKK---FGLMWELVKEIDEL------S---NGYVSLAAM  169 (441)
Q Consensus       102 ~~~~g~~~~A~~~~~~~~~~~~~g~~p~~~~y~~li~~~~~~~~---~~~a~~l~~~m~~~------~---~~~~~~~~~  169 (441)
                      ..+.|+..+|.++|+..... ...-.++...-+.++..|.+.+.   ..++..+-..+...      +   +..+....+
T Consensus       386 ~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  464 (987)
T PRK09782        386 LMQNGQSREAADLLLQRYPF-QGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAI  464 (987)
T ss_pred             HHHcccHHHHHHHHHHhcCC-CcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHH
Confidence            34567788888888644443 22233355666788888888876   33443331101000      0   011111122


Q ss_pred             HHHHhh----cCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC
Q 036107          170 STVMRR----LDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSP  245 (441)
Q Consensus       170 ~~~~~~----~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p  245 (441)
                      ...+..    .+...|..+-.++.. ++.++|...+.+.... .|+......+...+...|++++|...|+++...  .|
T Consensus       465 ~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~-~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p  540 (987)
T PRK09782        465 VRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQR-QPDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DM  540 (987)
T ss_pred             HHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CC
Confidence            122111    156677777777776 8888899977766332 255443333445556899999999999998654  45


Q ss_pred             CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHH
Q 036107          246 DGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIF  325 (441)
Q Consensus       246 ~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~  325 (441)
                      +...+..+...+.+.|++++|...+++..+.+ +.+...+..+.....+.|++++|...+++..+..  |+...      
T Consensus       541 ~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~--P~~~a------  611 (987)
T PRK09782        541 SNEDLLAAANTAQAAGNGAARDRWLQQAEQRG-LGDNALYWWLHAQRYIPGQPELALNDLTRSLNIA--PSANA------  611 (987)
T ss_pred             CcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhC--CCHHH------
Confidence            55566777788899999999999999998765 2233444444455566799999999999998764  45433      


Q ss_pred             HHHhcCccchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCCC
Q 036107          326 ILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDC-ETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVP  404 (441)
Q Consensus       326 ~~~~~g~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~-~t~~~li~~~~~~g~~~~a~~~~~~~~~m~~~~~~p  404 (441)
                                |..+...+.+.|+.++|+..+++..+.  .|+. ..+..+-..+...|+.++|...   +.+..+  ..|
T Consensus       612 ----------~~~LA~~l~~lG~~deA~~~l~~AL~l--~Pd~~~a~~nLG~aL~~~G~~eeAi~~---l~~AL~--l~P  674 (987)
T PRK09782        612 ----------YVARATIYRQRHNVPAAVSDLRAALEL--EPNNSNYQAALGYALWDSGDIAQSREM---LERAHK--GLP  674 (987)
T ss_pred             ----------HHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHH---HHHHHH--hCC
Confidence                      778888899999999999999998865  5554 4566666789999999999774   444332  234


Q ss_pred             -CHHHHHHHHHHHHhcCCccHHHHHHHHHHHH
Q 036107          405 -QESTHKMLAEELEKKSLGNAKERIDELLTHA  435 (441)
Q Consensus       405 -~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~  435 (441)
                       +...+..+-.++...|++++|+..++.....
T Consensus       675 ~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l  706 (987)
T PRK09782        675 DDPALIRQLAYVNQRLDDMAATQHYARLVIDD  706 (987)
T ss_pred             CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence             5668889999999999999999999887544

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=99.17  E-value=4.4e-08  Score=86.11  Aligned_cols=131  Identities=9%  Similarity=0.033  Sum_probs=58.1

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHH
Q 036107          179 RAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYC  258 (441)
Q Consensus       179 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~  258 (441)
                      ..+..+...+...|++++|.+.+++.....+.+...+..+...+...|++++|.+.+++..+.. +.+...+..+...+.
T Consensus        32 ~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~  110 (234)
T TIGR02521        32 KIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTFLC  110 (234)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHH
Confidence            3344444455555555555555554432223334444444455555555555555555444432 122334444444444


Q ss_pred             hcCCHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 036107          259 REKDFRKVDYTLKEMQEKGC-KPSVITCTIVMHALEKAKQIYEALKVYEKMKS  310 (441)
Q Consensus       259 ~~g~~~~a~~l~~~m~~~g~-~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~  310 (441)
                      ..|++++|.+.+++..+... ......+..+..++...|++++|.+.+.+..+
T Consensus       111 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  163 (234)
T TIGR02521       111 QQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQ  163 (234)
T ss_pred             HcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            55555555555555443211 11122333344444444444444444444443

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=99.16  E-value=4e-07  Score=81.88  Aligned_cols=290  Identities=11%  Similarity=0.056  Sum_probs=219.9

Q ss_pred             ChHHHHHHHhhhhhHhhhhcCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHhcCCCccHHHHHHHHhhcCHHHHHH
Q 036107          104 SPDKVVEALKCFCFTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSV  183 (441)
Q Consensus       104 ~~g~~~~A~~~~~~~~~~~~~g~~p~~~~y~~li~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~  183 (441)
                      ..|++..|.+....   ....+-. ....|-.-..+--+.|+.+.+-..+.+..+..+.             .+..++-+
T Consensus        96 ~eG~~~qAEkl~~r---nae~~e~-p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~-------------~~l~v~lt  158 (400)
T COG3071          96 FEGDFQQAEKLLRR---NAEHGEQ-PVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGD-------------DTLAVELT  158 (400)
T ss_pred             hcCcHHHHHHHHHH---hhhcCcc-hHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCC-------------chHHHHHH
Confidence            46788888887732   2222322 2346666777778889999999999999886311             15566777


Q ss_pred             HHHHHHhcCCHHHHHHHHHHhhhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCH-------hhHHHHHHH
Q 036107          184 LMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDG-------VSYTCFIEH  256 (441)
Q Consensus       184 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~-------~~~~~li~~  256 (441)
                      ........|+.+.|..-.+.+...-+-+..+......+|.+.|++.....++..|.+.|+--|.       .+|+.++.-
T Consensus       159 rarlll~~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q  238 (400)
T COG3071         159 RARLLLNRRDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQ  238 (400)
T ss_pred             HHHHHHhCCCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHH
Confidence            7788889999999999988886655667788999999999999999999999999998876554       468888887


Q ss_pred             HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCccchH
Q 036107          257 YCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIY  336 (441)
Q Consensus       257 ~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~  336 (441)
                      ....+..+.-...+++.... .+-+...-.+++.-+.++|+.++|.++..+-.+++..|+...                 
T Consensus       239 ~~~~~~~~gL~~~W~~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~~-----------------  300 (400)
T COG3071         239 ARDDNGSEGLKTWWKNQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLCR-----------------  300 (400)
T ss_pred             HhccccchHHHHHHHhccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHHH-----------------
Confidence            77777777766667666443 344566777888889999999999999999999888775322                 


Q ss_pred             HHHHHHHHhcCChhHHHHHHHHH-HHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 036107          337 NTMISSACVRSEEGNALKLRQKI-EEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEE  415 (441)
Q Consensus       337 ~~li~~~~~~g~~~~a~~~~~~m-~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~~~~m~~~~~~p~~~~~~~ll~~  415 (441)
                         .-.+.+-++.+.-++..++- ...+..|  ..+.+|=..|.+.+.+.+|...++   .  .....|+..+|+.+-++
T Consensus       301 ---~~~~l~~~d~~~l~k~~e~~l~~h~~~p--~L~~tLG~L~~k~~~w~kA~~~le---a--Al~~~~s~~~~~~la~~  370 (400)
T COG3071         301 ---LIPRLRPGDPEPLIKAAEKWLKQHPEDP--LLLSTLGRLALKNKLWGKASEALE---A--ALKLRPSASDYAELADA  370 (400)
T ss_pred             ---HHhhcCCCCchHHHHHHHHHHHhCCCCh--hHHHHHHHHHHHhhHHHHHHHHHH---H--HHhcCCChhhHHHHHHH
Confidence               22345566666666666553 4566666  557778888999999999988554   3  34689999999999999


Q ss_pred             HHhcCCccHHHHHHHHHHHHhhh
Q 036107          416 LEKKSLGNAKERIDELLTHATEQ  438 (441)
Q Consensus       416 ~~~~g~~~~a~~~~~~m~~~~~~  438 (441)
                      +.+.|+.++|.++.++-.....+
T Consensus       371 ~~~~g~~~~A~~~r~e~L~~~~~  393 (400)
T COG3071         371 LDQLGEPEEAEQVRREALLLTRQ  393 (400)
T ss_pred             HHHcCChHHHHHHHHHHHHHhcC
Confidence            99999999999999886544443

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=99.14  E-value=3.7e-07  Score=82.10  Aligned_cols=282  Identities=9%  Similarity=0.026  Sum_probs=220.1

Q ss_pred             hhhhchhhHHHHHhhhcCchhhHHHHHHHHHhcCCChHHHHHHHhhhhhHhhhhcCCCCCCHHHHHHHHHHHHcCCChhH
Q 036107           69 SLKLNEQSRISSHALSEDHETDVDKVSEILRKRYPSPDKVVEALKCFCFTWAKTQTGYMHTPETYNAMVEALGKSKKFGL  148 (441)
Q Consensus        69 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~g~~p~~~~y~~li~~~~~~~~~~~  148 (441)
                      .|++..|++......+.+..|-..  +-.=..+....|+.+.|-+.+...   .+..-.++...+-+.-......|+.+.
T Consensus        97 eG~~~qAEkl~~rnae~~e~p~l~--~l~aA~AA~qrgd~~~an~yL~ea---ae~~~~~~l~v~ltrarlll~~~d~~a  171 (400)
T COG3071          97 EGDFQQAEKLLRRNAEHGEQPVLA--YLLAAEAAQQRGDEDRANRYLAEA---AELAGDDTLAVELTRARLLLNRRDYPA  171 (400)
T ss_pred             cCcHHHHHHHHHHhhhcCcchHHH--HHHHHHHHHhcccHHHHHHHHHHH---hccCCCchHHHHHHHHHHHHhCCCchh
Confidence            478999999988888888777652  222235667778888888777322   222224567788888899999999999


Q ss_pred             HHHHHHHHHHhcCCCccHHHHHHHHhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhh-CCCCc-------HHHHHHHHH
Q 036107          149 MWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKD-CISLS-------SQIFDVLIH  220 (441)
Q Consensus       149 a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~-~~~~~-------~~~~~~li~  220 (441)
                      |.+-+++..+..+.              .+.+......+|.+.|++..+..+...+.+ +.--+       ..+|+.+++
T Consensus       172 A~~~v~~ll~~~pr--------------~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~  237 (400)
T COG3071         172 ARENVDQLLEMTPR--------------HPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQ  237 (400)
T ss_pred             HHHHHHHHHHhCcC--------------ChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHH
Confidence            99999999986633              678999999999999999999999999944 43322       346888888


Q ss_pred             HHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH
Q 036107          221 GWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYE  300 (441)
Q Consensus       221 ~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~  300 (441)
                      -....+..+.-...+++..+. .+-++..-.+++.-+.+.|+.++|.++..+-.+.+..|+.    ...-.+.+-++.+.
T Consensus       238 q~~~~~~~~gL~~~W~~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L----~~~~~~l~~~d~~~  312 (400)
T COG3071         238 QARDDNGSEGLKTWWKNQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRL----CRLIPRLRPGDPEP  312 (400)
T ss_pred             HHhccccchHHHHHHHhccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhH----HHHHhhcCCCCchH
Confidence            887777788877788877653 4456777778888999999999999999999988887762    22334667788887


Q ss_pred             HHHHHHHHh-hCCCCCCHHHHHHHHHHHHhcCccchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 036107          301 ALKVYEKMK-SDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCC  379 (441)
Q Consensus       301 a~~~~~~m~-~~g~~~~~~~~~~li~~~~~~g~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~  379 (441)
                      -.+..+.-. ..+-.|+.                  +.++-..|.+++.+.+|.+.|+.-.  ...|+..+|+-+-+++.
T Consensus       313 l~k~~e~~l~~h~~~p~L------------------~~tLG~L~~k~~~w~kA~~~leaAl--~~~~s~~~~~~la~~~~  372 (400)
T COG3071         313 LIKAAEKWLKQHPEDPLL------------------LSTLGRLALKNKLWGKASEALEAAL--KLRPSASDYAELADALD  372 (400)
T ss_pred             HHHHHHHHHHhCCCChhH------------------HHHHHHHHHHhhHHHHHHHHHHHHH--hcCCChhhHHHHHHHHH
Confidence            777777654 46767743                  8888899999999999999999655  45899999999999999


Q ss_pred             hcCChhhHHHHHHHH
Q 036107          380 HKKRMKDGMLVLNLM  394 (441)
Q Consensus       380 ~~g~~~~a~~~~~~~  394 (441)
                      +.|+..+|.++.+.-
T Consensus       373 ~~g~~~~A~~~r~e~  387 (400)
T COG3071         373 QLGEPEEAEQVRREA  387 (400)
T ss_pred             HcCChHHHHHHHHHH
Confidence            999999998865533

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=99.13  E-value=2.9e-08  Score=94.57  Aligned_cols=280  Identities=14%  Similarity=0.053  Sum_probs=200.1

Q ss_pred             HHHHHHhhhhhHhhhhcCCCCCC-HHHHHHHHHHHHcCCChhHHHHHHHHHHHhcCCCccHHHHHHHHhhcCHHHHHHHH
Q 036107          107 KVVEALKCFCFTWAKTQTGYMHT-PETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLM  185 (441)
Q Consensus       107 ~~~~A~~~~~~~~~~~~~g~~p~-~~~y~~li~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~li  185 (441)
                      ...+|+..|.-     .....++ ......+-.+|...+++++|..+|+...+..+-.+.           +.++|++++
T Consensus       334 ~~~~A~~~~~k-----lp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~-----------~meiyST~L  397 (638)
T KOG1126|consen  334 NCREALNLFEK-----LPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVK-----------GMEIYSTTL  397 (638)
T ss_pred             HHHHHHHHHHh-----hHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccc-----------chhHHHHHH
Confidence            44567777632     2222233 345566778888999999999999999986644332           788999988


Q ss_pred             HHHHhcCCHHHHHHHH-HHhhhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC-CHhhHHHHHHHHHhcCCH
Q 036107          186 DTLVKRNSVAHAYKVF-LKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSP-DGVSYTCFIEHYCREKDF  263 (441)
Q Consensus       186 ~~~~~~g~~~~a~~~~-~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~  263 (441)
                      -.+-+.-    ++..+ +.+-+..+-...+|.++-++|+-.++.+.|++.|++..+  +.| ...+|+.+-.-+....++
T Consensus       398 WHLq~~v----~Ls~Laq~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQ--ldp~faYayTLlGhE~~~~ee~  471 (638)
T KOG1126|consen  398 WHLQDEV----ALSYLAQDLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQ--LDPRFAYAYTLLGHESIATEEF  471 (638)
T ss_pred             HHHHhhH----HHHHHHHHHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhc--cCCccchhhhhcCChhhhhHHH
Confidence            8765432    22222 222222345667899999999999999999999999987  446 678999999999999999


Q ss_pred             HHHHHHHHHHHHcCCCCCHHHHH---HHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCccchHHHHH
Q 036107          264 RKVDYTLKEMQEKGCKPSVITCT---IVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMI  340 (441)
Q Consensus       264 ~~a~~l~~~m~~~g~~p~~~~~~---~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~~~li  340 (441)
                      |.|...|+....    +|...|+   .+.-.|.+.++++.|+-.|+...+.+  |...+               .-..+.
T Consensus       472 d~a~~~fr~Al~----~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN--P~nsv---------------i~~~~g  530 (638)
T KOG1126|consen  472 DKAMKSFRKALG----VDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEIN--PSNSV---------------ILCHIG  530 (638)
T ss_pred             HhHHHHHHhhhc----CCchhhHHHHhhhhheeccchhhHHHHHHHhhhcCC--ccchh---------------HHhhhh
Confidence            999999998655    3555555   46677999999999999999988864  32221               134445


Q ss_pred             HHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhc
Q 036107          341 SSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQ-ESTHKMLAEELEKK  419 (441)
Q Consensus       341 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~  419 (441)
                      ..+-+.|+.++|++++++.....- -|...--.-...+...+++++|.+.++.+++     +.|+ ...|..+.+.|.+.
T Consensus       531 ~~~~~~k~~d~AL~~~~~A~~ld~-kn~l~~~~~~~il~~~~~~~eal~~LEeLk~-----~vP~es~v~~llgki~k~~  604 (638)
T KOG1126|consen  531 RIQHQLKRKDKALQLYEKAIHLDP-KNPLCKYHRASILFSLGRYVEALQELEELKE-----LVPQESSVFALLGKIYKRL  604 (638)
T ss_pred             HHHHHhhhhhHHHHHHHHHHhcCC-CCchhHHHHHHHHHhhcchHHHHHHHHHHHH-----hCcchHHHHHHHHHHHHHH
Confidence            566778888999999999875432 2222222334455567899999775555555     4565 45788888899999


Q ss_pred             CCccHHHHHHHHHHHH
Q 036107          420 SLGNAKERIDELLTHA  435 (441)
Q Consensus       420 g~~~~a~~~~~~m~~~  435 (441)
                      |+.+.|..=|.-+...
T Consensus       605 ~~~~~Al~~f~~A~~l  620 (638)
T KOG1126|consen  605 GNTDLALLHFSWALDL  620 (638)
T ss_pred             ccchHHHHhhHHHhcC
Confidence            9999998877766544

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=99.09  E-value=2.7e-07  Score=80.70  Aligned_cols=225  Identities=11%  Similarity=0.065  Sum_probs=150.8

Q ss_pred             HHHHHHHHHHcCCChhHHHHHHHHHHHhcCCCccHHHHHHHHhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhh--CCC
Q 036107          132 TYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKD--CIS  209 (441)
Q Consensus       132 ~y~~li~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~--~~~  209 (441)
                      .|-+-++.+. +++.++|.++|-+|.+.++.              +.++--+|-+.|-+.|.+|.|+++.+.+-+  +..
T Consensus        38 ~Yv~GlNfLL-s~Q~dKAvdlF~e~l~~d~~--------------t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT  102 (389)
T COG2956          38 DYVKGLNFLL-SNQPDKAVDLFLEMLQEDPE--------------TFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLT  102 (389)
T ss_pred             HHHhHHHHHh-hcCcchHHHHHHHHHhcCch--------------hhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCc
Confidence            4444444443 56899999999999985422              455666788889999999999999998843  222


Q ss_pred             CcH--HHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC----HH
Q 036107          210 LSS--QIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPS----VI  283 (441)
Q Consensus       210 ~~~--~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~----~~  283 (441)
                      -+.  ...-.|-.-|...|-++.|+++|..+.+.|. .-......|+..|-...+|++|.++-+++.+.|-.+.    ..
T Consensus       103 ~~qr~lAl~qL~~Dym~aGl~DRAE~~f~~L~de~e-fa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAq  181 (389)
T COG2956         103 FEQRLLALQQLGRDYMAAGLLDRAEDIFNQLVDEGE-FAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQ  181 (389)
T ss_pred             hHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhcchh-hhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHH
Confidence            111  2233456778899999999999999987542 2355678899999999999999999999988765544    24


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCccchHHHHHHHHHhcCChhHHHHHHHHHHHcC
Q 036107          284 TCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDS  363 (441)
Q Consensus       284 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g  363 (441)
                      .|.-+-..+....+++.|...+....+.+-+- +..                --.+-..+...|+++.|.+.++...+++
T Consensus       182 fyCELAq~~~~~~~~d~A~~~l~kAlqa~~~c-vRA----------------si~lG~v~~~~g~y~~AV~~~e~v~eQn  244 (389)
T COG2956         182 FYCELAQQALASSDVDRARELLKKALQADKKC-VRA----------------SIILGRVELAKGDYQKAVEALERVLEQN  244 (389)
T ss_pred             HHHHHHHHHhhhhhHHHHHHHHHHHHhhCccc-eeh----------------hhhhhHHHHhccchHHHHHHHHHHHHhC
Confidence            56667777777888999999998887754221 111                1112233444555555555555555554


Q ss_pred             CCCCHHHHHHHHHHHHhcCChhhHHH
Q 036107          364 CKPDCETHARSLKMCCHKKRMKDGML  389 (441)
Q Consensus       364 ~~p~~~t~~~li~~~~~~g~~~~a~~  389 (441)
                      ..--..+...|..+|.+.|+.+++..
T Consensus       245 ~~yl~evl~~L~~~Y~~lg~~~~~~~  270 (389)
T COG2956         245 PEYLSEVLEMLYECYAQLGKPAEGLN  270 (389)
T ss_pred             hHHHHHHHHHHHHHHHHhCCHHHHHH
Confidence            44444455555555555555555433

>PRK12370 invasion protein regulator; Provisional

Probab=99.09  E-value=1.4e-07  Score=94.00  Aligned_cols=234  Identities=13%  Similarity=0.043  Sum_probs=136.6

Q ss_pred             ChHHHHHHHhhhhhHhhhhcCCCCCC-HHHHHHHHHHHH---------cCCChhHHHHHHHHHHHhcCCCccHHHHHHHH
Q 036107          104 SPDKVVEALKCFCFTWAKTQTGYMHT-PETYNAMVEALG---------KSKKFGLMWELVKEIDELSNGYVSLAAMSTVM  173 (441)
Q Consensus       104 ~~g~~~~A~~~~~~~~~~~~~g~~p~-~~~y~~li~~~~---------~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~~~  173 (441)
                      ..++.++|++.|+..-     ...|+ ...|..+-.++.         ..+++++|.+.+++..+..+.           
T Consensus       273 ~~~~~~~A~~~~~~Al-----~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~-----------  336 (553)
T PRK12370        273 TPYSLQQALKLLTQCV-----NMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHN-----------  336 (553)
T ss_pred             CHHHHHHHHHHHHHHH-----hcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCC-----------
Confidence            3456667777774222     23343 334444433322         223467777777777765422           


Q ss_pred             hhcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCH-hhHHH
Q 036107          174 RRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDG-VSYTC  252 (441)
Q Consensus       174 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~-~~~~~  252 (441)
                         +...+..+-..+...|++++|...|++.-...+.+...+..+-..+...|++++|...+++..+.  .|+. ..+..
T Consensus       337 ---~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l--~P~~~~~~~~  411 (553)
T PRK12370        337 ---NPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKL--DPTRAAAGIT  411 (553)
T ss_pred             ---CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCChhhHHH
Confidence               56666677677777788888888887764444455666777777777788888888888877764  3432 22333


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCc
Q 036107          253 FIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVR  332 (441)
Q Consensus       253 li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~  332 (441)
                      ++..+...|++++|...+++..+...+-+...+..+-.++...|++++|...+.++...  .|+...             
T Consensus       412 ~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~--~~~~~~-------------  476 (553)
T PRK12370        412 KLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ--EITGLI-------------  476 (553)
T ss_pred             HHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc--cchhHH-------------
Confidence            44445567777888887777665432223444566666677778888888877776543  222221             


Q ss_pred             cchHHHHHHHHHhcCChhHHHHHHHHHHH-cCCCCCHHHHHHHHHH
Q 036107          333 FLIYNTMISSACVRSEEGNALKLRQKIEE-DSCKPDCETHARSLKM  377 (441)
Q Consensus       333 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~-~g~~p~~~t~~~li~~  377 (441)
                        ..+.+...|+..|  +.|...++++.+ ....|....+..++.+
T Consensus       477 --~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~~~~~~~~~~~~~  518 (553)
T PRK12370        477 --AVNLLYAEYCQNS--ERALPTIREFLESEQRIDNNPGLLPLVLV  518 (553)
T ss_pred             --HHHHHHHHHhccH--HHHHHHHHHHHHHhhHhhcCchHHHHHHH
Confidence              1455555556666  366666666543 2233433333344443

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=99.08  E-value=5.9e-07  Score=88.55  Aligned_cols=323  Identities=10%  Similarity=0.053  Sum_probs=220.6

Q ss_pred             hhhchhhHHHHHhhhcCchhhHHHHHHHHHhcCCChHHHHHHHhhhhhHhhhhcCCCCCCHHHHHHHHHHHHcCCChhHH
Q 036107           70 LKLNEQSRISSHALSEDHETDVDKVSEILRKRYPSPDKVVEALKCFCFTWAKTQTGYMHTPETYNAMVEALGKSKKFGLM  149 (441)
Q Consensus        70 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~g~~p~~~~y~~li~~~~~~~~~~~a  149 (441)
                      |++++|.+|+..+.+......  ..+..|..+|-+.|+.+.++..+    ....+-.+-|...|-.+-....+.|.++.|
T Consensus       153 g~~eeA~~i~~EvIkqdp~~~--~ay~tL~~IyEqrGd~eK~l~~~----llAAHL~p~d~e~W~~ladls~~~~~i~qA  226 (895)
T KOG2076|consen  153 GDLEEAEEILMEVIKQDPRNP--IAYYTLGEIYEQRGDIEKALNFW----LLAAHLNPKDYELWKRLADLSEQLGNINQA  226 (895)
T ss_pred             CCHHHHHHHHHHHHHhCccch--hhHHHHHHHHHHcccHHHHHHHH----HHHHhcCCCChHHHHHHHHHHHhcccHHHH
Confidence            778888888888888765544  46777888888888888888754    222223333667888888888888889999


Q ss_pred             HHHHHHHHHhcCCCccHHHHHHHHhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcHH-HH----HHHHHHHHh
Q 036107          150 WELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQ-IF----DVLIHGWCK  224 (441)
Q Consensus       150 ~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~----~~li~~~~~  224 (441)
                      .-.|.+..+..|.              +...+---...|-+.|+...|.+-|.++-.-.+|... -+    -.+++.|..
T Consensus       227 ~~cy~rAI~~~p~--------------n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~  292 (895)
T KOG2076|consen  227 RYCYSRAIQANPS--------------NWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFIT  292 (895)
T ss_pred             HHHHHHHHhcCCc--------------chHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHH
Confidence            8888888775422              3334444456777888888888888887433333222 12    234556666


Q ss_pred             cCCHHHHHHHHHHHhhC-CCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-------------------------
Q 036107          225 TRKSDYAQKAMKEMFQH-GFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGC-------------------------  278 (441)
Q Consensus       225 ~~~~~~a~~~~~~m~~~-g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~-------------------------  278 (441)
                      .++-+.|.+.++..... +-.-+...++.+...+.+...++.|......+.....                         
T Consensus       293 ~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~  372 (895)
T KOG2076|consen  293 HNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGK  372 (895)
T ss_pred             hhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCC
Confidence            77778888888777652 2233556777888888888888888888877765221                         


Q ss_pred             --CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCccchHHHHHHHHHhcCChhHHHHHH
Q 036107          279 --KPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLR  356 (441)
Q Consensus       279 --~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~~~li~~~~~~g~~~~a~~~~  356 (441)
                        .++... .-++-++.+....+....+.....+..+.|+...              ..|.-+..+|...|++.+|+++|
T Consensus       373 ~~s~~l~v-~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~--------------dL~~d~a~al~~~~~~~~Al~~l  437 (895)
T KOG2076|consen  373 ELSYDLRV-IRLMICLVHLKERELLEALLHFLVEDNVWVSDDV--------------DLYLDLADALTNIGKYKEALRLL  437 (895)
T ss_pred             CCCccchh-HhHhhhhhcccccchHHHHHHHHHHhcCChhhhH--------------HHHHHHHHHHHhcccHHHHHHHH
Confidence              222222 2233444555555555555666666554443322              33777888899999999999999


Q ss_pred             HHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCccHHHHHHHHH
Q 036107          357 QKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQE-STHKMLAEELEKKSLGNAKERIDELL  432 (441)
Q Consensus       357 ~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~~~~m~~~~~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~m  432 (441)
                      ..+.....--+...|-.+-.+|...|.+++|.+.++..-.     ..|+. ..--.|-..+.+.|+.++|.+.++.|
T Consensus       438 ~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~-----~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~  509 (895)
T KOG2076|consen  438 SPITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLI-----LAPDNLDARITLASLYQQLGNHEKALETLEQI  509 (895)
T ss_pred             HHHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHh-----cCCCchhhhhhHHHHHHhcCCHHHHHHHHhcc
Confidence            9998765555677899999999999999999886665544     34433 34455666778999999999888775

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.01  E-value=1.1e-06  Score=80.43  Aligned_cols=286  Identities=11%  Similarity=0.050  Sum_probs=207.4

Q ss_pred             hhHHHhhhhchhhHHHHHhhhcCchhhHHHHHHHHHhcCCChHHHHHHHhhhhhHhhhhcCCCC-CCHHHHHHHHHHHHc
Q 036107           64 ASWVESLKLNEQSRISSHALSEDHETDVDKVSEILRKRYPSPDKVVEALKCFCFTWAKTQTGYM-HTPETYNAMVEALGK  142 (441)
Q Consensus        64 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~g~~-p~~~~y~~li~~~~~  142 (441)
                      .++......+++..=.......|+.... .+-+....+.-...+++.|+.+|+.....  ..++ -|..+|+.++-.--.
T Consensus       235 ~a~~el~q~~e~~~k~e~l~~~gf~~~~-~i~~~~A~~~y~~rDfD~a~s~Feei~kn--DPYRl~dmdlySN~LYv~~~  311 (559)
T KOG1155|consen  235 KAYQELHQHEEALQKKERLSSVGFPNSM-YIKTQIAAASYNQRDFDQAESVFEEIRKN--DPYRLDDMDLYSNVLYVKND  311 (559)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccCCccH-HHHHHHHHHHhhhhhHHHHHHHHHHHHhc--CCCcchhHHHHhHHHHHHhh
Confidence            3444444455555555555666666665 67777777888889999999999755433  1222 167899988844433


Q ss_pred             CCChh-HHHHHHHHHHHhcCCCccHHHHHHHHhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcHHHHHHHHHH
Q 036107          143 SKKFG-LMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHG  221 (441)
Q Consensus       143 ~~~~~-~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~  221 (441)
                      ..++. .|..+++-                  .++-++|+-++-+-|+-.++.|+|...|++.-+-.+.....|+.+-+-
T Consensus       312 ~skLs~LA~~v~~i------------------dKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHE  373 (559)
T KOG1155|consen  312 KSKLSYLAQNVSNI------------------DKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHE  373 (559)
T ss_pred             hHHHHHHHHHHHHh------------------ccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHH
Confidence            22222 12222211                  233678889999999999999999999998855556677789999999


Q ss_pred             HHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 036107          222 WCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEA  301 (441)
Q Consensus       222 ~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a  301 (441)
                      |...++...|.+-|+...+-. +.|-..|-.|-.+|.-.+...-|+-.|++..+.. +-|...|.+|-++|.+.++.++|
T Consensus       374 yvEmKNt~AAi~sYRrAvdi~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eA  451 (559)
T KOG1155|consen  374 YVEMKNTHAAIESYRRAVDIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEA  451 (559)
T ss_pred             HHHhcccHHHHHHHHHHHhcC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHH
Confidence            999999999999999988743 3577899999999999999999999999987752 34789999999999999999999


Q ss_pred             HHHHHHHhhCCCCCCHHHHHHHHHHHHhcCccchHHHHHHHHHhcCChhHHHHHHHHHHH----cCCCCC-HH-HHHHHH
Q 036107          302 LKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEE----DSCKPD-CE-THARSL  375 (441)
Q Consensus       302 ~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~~~li~~~~~~g~~~~a~~~~~~m~~----~g~~p~-~~-t~~~li  375 (441)
                      ++.|......|-. +..                .+..+-..|-+.++.++|-..|++..+    .|..-+ .. .-.-|.
T Consensus       452 iKCykrai~~~dt-e~~----------------~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA  514 (559)
T KOG1155|consen  452 IKCYKRAILLGDT-EGS----------------ALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLA  514 (559)
T ss_pred             HHHHHHHHhcccc-chH----------------HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHH
Confidence            9999999887633 222                378888888888999999988877654    343222 21 222233


Q ss_pred             HHHHhcCChhhHHH
Q 036107          376 KMCCHKKRMKDGML  389 (441)
Q Consensus       376 ~~~~~~g~~~~a~~  389 (441)
                      .-+.+.+++++|..
T Consensus       515 ~~f~k~~~~~~As~  528 (559)
T KOG1155|consen  515 EYFKKMKDFDEASY  528 (559)
T ss_pred             HHHHhhcchHHHHH
Confidence            45557777777744

>PRK12370 invasion protein regulator; Provisional

Probab=98.99  E-value=1.5e-06  Score=86.68  Aligned_cols=264  Identities=10%  Similarity=0.031  Sum_probs=174.0

Q ss_pred             CCHHHHHHHHHHHHcC-----CChhHHHHHHHHHHHhcCCCccHHHHHHHHhhcCHHHHHHHHHHHH---------hcCC
Q 036107          128 HTPETYNAMVEALGKS-----KKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLV---------KRNS  193 (441)
Q Consensus       128 p~~~~y~~li~~~~~~-----~~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~---------~~g~  193 (441)
                      .+...|...+.+-...     +++++|.++|++..+..|.              +...|..+-.++.         ..++
T Consensus       254 ~~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ldP~--------------~a~a~~~La~~~~~~~~~g~~~~~~~  319 (553)
T PRK12370        254 NSIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMSPN--------------SIAPYCALAECYLSMAQMGIFDKQNA  319 (553)
T ss_pred             CChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcCCc--------------cHHHHHHHHHHHHHHHHcCCcccchH
Confidence            3566676776664221     3467899999998886543              3344444433332         3355


Q ss_pred             HHHHHHHHHHhhhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC-HhhHHHHHHHHHhcCCHHHHHHHHHH
Q 036107          194 VAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPD-GVSYTCFIEHYCREKDFRKVDYTLKE  272 (441)
Q Consensus       194 ~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~a~~l~~~  272 (441)
                      +++|...+++.-...+-+...+..+-..+...|++++|...|++..+.+  |+ ...|..+-..+...|++++|...+++
T Consensus       320 ~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~--P~~~~a~~~lg~~l~~~G~~~eAi~~~~~  397 (553)
T PRK12370        320 MIKAKEHAIKATELDHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLS--PISADIKYYYGWNLFMAGQLEEALQTINE  397 (553)
T ss_pred             HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence            8999999998865556677888888888999999999999999998854  54 56788888899999999999999999


Q ss_pred             HHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCccchHHHHHHHHHhcCChhHH
Q 036107          273 MQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNA  352 (441)
Q Consensus       273 m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~~~li~~~~~~g~~~~a  352 (441)
                      ..+.... +...+..++..+...|++++|...+++..+.. .|+..               ..+..+-..+...|+.++|
T Consensus       398 Al~l~P~-~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~-~p~~~---------------~~~~~la~~l~~~G~~~eA  460 (553)
T PRK12370        398 CLKLDPT-RAAAGITKLWITYYHTGIDDAIRLGDELRSQH-LQDNP---------------ILLSMQVMFLSLKGKHELA  460 (553)
T ss_pred             HHhcCCC-ChhhHHHHHHHHHhccCHHHHHHHHHHHHHhc-cccCH---------------HHHHHHHHHHHhCCCHHHH
Confidence            9886433 22233444555777899999999999987653 23221               1256677778889999999


Q ss_pred             HHHHHHHHHcCCCCCHHHHH-HHHHHHHhcCChhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCccHHHHHHHH
Q 036107          353 LKLRQKIEEDSCKPDCETHA-RSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEKKSLGNAKERIDEL  431 (441)
Q Consensus       353 ~~~~~~m~~~g~~p~~~t~~-~li~~~~~~g~~~~a~~~~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~  431 (441)
                      ...+.++...  .|+..+.. .+...++..|+  .+...++.+.+..  +..|...-...  ..+.-.|+-+.+..+ +.
T Consensus       461 ~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~--~a~~~l~~ll~~~--~~~~~~~~~~~--~~~~~~g~~~~~~~~-~~  531 (553)
T PRK12370        461 RKLTKEISTQ--EITGLIAVNLLYAEYCQNSE--RALPTIREFLESE--QRIDNNPGLLP--LVLVAHGEAIAEKMW-NK  531 (553)
T ss_pred             HHHHHHhhhc--cchhHHHHHHHHHHHhccHH--HHHHHHHHHHHHh--hHhhcCchHHH--HHHHHHhhhHHHHHH-HH
Confidence            9999987543  55544443 44445566663  6655444333322  22232222233  334444555554444 44


Q ss_pred             HH
Q 036107          432 LT  433 (441)
Q Consensus       432 m~  433 (441)
                      +.
T Consensus       532 ~~  533 (553)
T PRK12370        532 FK  533 (553)
T ss_pred             hh
Confidence            43

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=98.98  E-value=1.1e-06  Score=76.97  Aligned_cols=169  Identities=12%  Similarity=0.070  Sum_probs=75.4

Q ss_pred             HHHHHHHHHcCCChhHHHHHHHHHHHhcCCCccHHHHHHHHhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcH
Q 036107          133 YNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSS  212 (441)
Q Consensus       133 y~~li~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~  212 (441)
                      --+|-+.|.+.|..+.|+.+-....+.. ..+..-         -..+.--|-.-|...|-++.|+.+|..+.+.-..-.
T Consensus        72 ~ltLGnLfRsRGEvDRAIRiHQ~L~~sp-dlT~~q---------r~lAl~qL~~Dym~aGl~DRAE~~f~~L~de~efa~  141 (389)
T COG2956          72 HLTLGNLFRSRGEVDRAIRIHQTLLESP-DLTFEQ---------RLLALQQLGRDYMAAGLLDRAEDIFNQLVDEGEFAE  141 (389)
T ss_pred             HHHHHHHHHhcchHHHHHHHHHHHhcCC-CCchHH---------HHHHHHHHHHHHHHhhhhhHHHHHHHHHhcchhhhH
Confidence            3344444555555555555555555432 222100         112223344445555555555555555533112222


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCH----hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 036107          213 QIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDG----VSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIV  288 (441)
Q Consensus       213 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~----~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~l  288 (441)
                      .....|+..|-+..+|++|.++-+++.+.|-.+..    ..|--+-..+....+++.|..+++...+.+.+ .+..--.+
T Consensus       142 ~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~-cvRAsi~l  220 (389)
T COG2956         142 GALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQADKK-CVRASIIL  220 (389)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCcc-ceehhhhh
Confidence            23455555555555555555555555544333221    23334444444445555555555554443211 11111222


Q ss_pred             HHHHHhcCCHHHHHHHHHHHhhCC
Q 036107          289 MHALEKAKQIYEALKVYEKMKSDD  312 (441)
Q Consensus       289 l~~~~~~~~~~~a~~~~~~m~~~g  312 (441)
                      -+.....|+++.|.+.++...+.+
T Consensus       221 G~v~~~~g~y~~AV~~~e~v~eQn  244 (389)
T COG2956         221 GRVELAKGDYQKAVEALERVLEQN  244 (389)
T ss_pred             hHHHHhccchHHHHHHHHHHHHhC
Confidence            334445555555555555555543

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=98.97  E-value=9.4e-07  Score=84.81  Aligned_cols=248  Identities=16%  Similarity=0.116  Sum_probs=175.7

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHhh----h--C-CCCcHHH-HHHHHHHHHhcCCHHHHHHHHHHHhhC-----C-CC
Q 036107          179 RAMSVLMDTLVKRNSVAHAYKVFLKFK----D--C-ISLSSQI-FDVLIHGWCKTRKSDYAQKAMKEMFQH-----G-FS  244 (441)
Q Consensus       179 ~~~~~li~~~~~~g~~~~a~~~~~~~~----~--~-~~~~~~~-~~~li~~~~~~~~~~~a~~~~~~m~~~-----g-~~  244 (441)
                      .+...|...|...|+++.|+.++.+.-    +  | ..|...+ .+.+-..|...+++++|..+|+++..-     | -.
T Consensus       200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h  279 (508)
T KOG1840|consen  200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDH  279 (508)
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCC
Confidence            555669999999999999999997752    1  1 2233322 333556788899999999999998742     2 11


Q ss_pred             CC-HhhHHHHHHHHHhcCCHHHHHHHHHHHHH---c--CCC-CCH-HHHHHHHHHHHhcCCHHHHHHHHHHHhhC---CC
Q 036107          245 PD-GVSYTCFIEHYCREKDFRKVDYTLKEMQE---K--GCK-PSV-ITCTIVMHALEKAKQIYEALKVYEKMKSD---DC  313 (441)
Q Consensus       245 p~-~~~~~~li~~~~~~g~~~~a~~l~~~m~~---~--g~~-p~~-~~~~~ll~~~~~~~~~~~a~~~~~~m~~~---g~  313 (441)
                      |. ..+++.|-..|.+.|++++|...++...+   .  |.. |.+ .-++.+...|+..+++++|..++....+.   -.
T Consensus       280 ~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~  359 (508)
T KOG1840|consen  280 PAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAP  359 (508)
T ss_pred             HHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhc
Confidence            22 35677777889999999999888887543   1  222 222 34567777899999999999999876441   12


Q ss_pred             CCCHHHHHHHHHHHHhcCccchHHHHHHHHHhcCChhHHHHHHHHHHH----cCC--CCC-HHHHHHHHHHHHhcCChhh
Q 036107          314 LTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEE----DSC--KPD-CETHARSLKMCCHKKRMKD  386 (441)
Q Consensus       314 ~~~~~~~~~li~~~~~~g~~~~~~~li~~~~~~g~~~~a~~~~~~m~~----~g~--~p~-~~t~~~li~~~~~~g~~~~  386 (441)
                      .++.....            .+++.|-..|...|++++|.+++++...    .+.  .+. ...++.+-..|.+.+.+++
T Consensus       360 g~~~~~~a------------~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~  427 (508)
T KOG1840|consen  360 GEDNVNLA------------KIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEE  427 (508)
T ss_pred             cccchHHH------------HHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccch
Confidence            22221100            3488899999999999999999998653    222  222 4567888889999999998


Q ss_pred             HHHHHHHHHHHH-HCC--CCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhhh
Q 036107          387 GMLVLNLMREML-SKG--IVPQESTHKMLAEELEKKSLGNAKERIDELLTHATEQ  438 (441)
Q Consensus       387 a~~~~~~~~~m~-~~~--~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~  438 (441)
                      |.++|..-.... ..|  .+-...+|..|...|.+.|++++|.++.+...+..++
T Consensus       428 a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~~~~~  482 (508)
T KOG1840|consen  428 AEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLNAREQ  482 (508)
T ss_pred             HHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHH
Confidence            888776443333 222  2223458999999999999999999999998876654

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=98.91  E-value=1.6e-06  Score=86.26  Aligned_cols=96  Identities=5%  Similarity=-0.085  Sum_probs=69.3

Q ss_pred             HHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 036107          339 MISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEK  418 (441)
Q Consensus       339 li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~~~~m~~~~~~p~~~~~~~ll~~~~~  418 (441)
                      +--.++..|++++|..+|.+..+... -+..+|-.+-++|...|++..|.++|+..-+  ...-.-+..+...|.+++.+
T Consensus       652 IgiVLA~kg~~~~A~dIFsqVrEa~~-~~~dv~lNlah~~~e~~qy~~AIqmYe~~lk--kf~~~~~~~vl~~Lara~y~  728 (1018)
T KOG2002|consen  652 IGIVLAEKGRFSEARDIFSQVREATS-DFEDVWLNLAHCYVEQGQYRLAIQMYENCLK--KFYKKNRSEVLHYLARAWYE  728 (1018)
T ss_pred             hhhhhhhccCchHHHHHHHHHHHHHh-hCCceeeeHHHHHHHHHHHHHHHHHHHHHHH--HhcccCCHHHHHHHHHHHHH
Confidence            44455677888888888888877653 2334567788888888999888887665544  33455577788888899999


Q ss_pred             cCCccHHHHHHHHHHHHhh
Q 036107          419 KSLGNAKERIDELLTHATE  437 (441)
Q Consensus       419 ~g~~~~a~~~~~~m~~~~~  437 (441)
                      +|.+.+|.+....-.+...
T Consensus       729 ~~~~~eak~~ll~a~~~~p  747 (1018)
T KOG2002|consen  729 AGKLQEAKEALLKARHLAP  747 (1018)
T ss_pred             hhhHHHHHHHHHHHHHhCC
Confidence            9998888887766554443

>PF12854 PPR_1: PPR repeat

Probab=98.89  E-value=2.3e-09  Score=62.33  Aligned_cols=32  Identities=31%  Similarity=0.611  Sum_probs=14.2

Q ss_pred             CCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 036107          242 GFSPDGVSYTCFIEHYCREKDFRKVDYTLKEM  273 (441)
Q Consensus       242 g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m  273 (441)
                      |+.||..|||+||++|++.|++++|.++|++|
T Consensus         2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M   33 (34)
T PF12854_consen    2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM   33 (34)
T ss_pred             CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence            34444444444444444444444444444443

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=98.88  E-value=4.3e-07  Score=86.77  Aligned_cols=252  Identities=13%  Similarity=0.033  Sum_probs=184.7

Q ss_pred             ChhHHHHHHHHHHHhcCCCccHHHHHHHHhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhh---CCCCcHHHHHHHHHH
Q 036107          145 KFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKD---CISLSSQIFDVLIHG  221 (441)
Q Consensus       145 ~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~~~~li~~  221 (441)
                      +..+|..+|.........              +.++..-+-.+|-..+++++|+++|+.+++   -..-+..+|++.+-.
T Consensus       334 ~~~~A~~~~~klp~h~~n--------------t~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWH  399 (638)
T KOG1126|consen  334 NCREALNLFEKLPSHHYN--------------TGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWH  399 (638)
T ss_pred             HHHHHHHHHHhhHHhcCC--------------chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHH
Confidence            467788888886553311              457777888999999999999999999954   233467788888765


Q ss_pred             HHhcCCH-HHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH
Q 036107          222 WCKTRKS-DYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYE  300 (441)
Q Consensus       222 ~~~~~~~-~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~  300 (441)
                      +-+.-.. -.|..+.+.++     -.+.+|-++-++|.-+++.+.|++.|++..+.... ..++|+.+-+-+.....+|.
T Consensus       400 Lq~~v~Ls~Laq~Li~~~~-----~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~-faYayTLlGhE~~~~ee~d~  473 (638)
T KOG1126|consen  400 LQDEVALSYLAQDLIDTDP-----NSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPR-FAYAYTLLGHESIATEEFDK  473 (638)
T ss_pred             HHhhHHHHHHHHHHHhhCC-----CCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCc-cchhhhhcCChhhhhHHHHh
Confidence            5443221 12334444433     35789999999999999999999999998875322 67899998888999999999


Q ss_pred             HHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCccchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC-HHHHHHHHHHHH
Q 036107          301 ALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPD-CETHARSLKMCC  379 (441)
Q Consensus       301 a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~t~~~li~~~~  379 (441)
                      |...|+....    .|...||+             |--+-..|.+.++.+.|+-.|++..+  +.|. .+....+-..+.
T Consensus       474 a~~~fr~Al~----~~~rhYnA-------------wYGlG~vy~Kqek~e~Ae~~fqkA~~--INP~nsvi~~~~g~~~~  534 (638)
T KOG1126|consen  474 AMKSFRKALG----VDPRHYNA-------------WYGLGTVYLKQEKLEFAEFHFQKAVE--INPSNSVILCHIGRIQH  534 (638)
T ss_pred             HHHHHHhhhc----CCchhhHH-------------HHhhhhheeccchhhHHHHHHHhhhc--CCccchhHHhhhhHHHH
Confidence            9999987764    46666655             66777889999999999999998775  4554 445556666777


Q ss_pred             hcCChhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhhhc
Q 036107          380 HKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEKKSLGNAKERIDELLTHATEQR  439 (441)
Q Consensus       380 ~~g~~~~a~~~~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~  439 (441)
                      +.|+.++|.+   ++++.....-+-...-|. -...+...+++++|...+++++....+.
T Consensus       535 ~~k~~d~AL~---~~~~A~~ld~kn~l~~~~-~~~il~~~~~~~eal~~LEeLk~~vP~e  590 (638)
T KOG1126|consen  535 QLKRKDKALQ---LYEKAIHLDPKNPLCKYH-RASILFSLGRYVEALQELEELKELVPQE  590 (638)
T ss_pred             HhhhhhHHHH---HHHHHHhcCCCCchhHHH-HHHHHHhhcchHHHHHHHHHHHHhCcch
Confidence            8899999966   565654433333333333 3455778899999999999998766543

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=98.87  E-value=8.3e-07  Score=85.17  Aligned_cols=249  Identities=13%  Similarity=0.069  Sum_probs=174.8

Q ss_pred             hhHHHHHHHHHhcCCChHHHHHHHhhhhhHhhh--hcCCCC-CCHH-HHHHHHHHHHcCCChhHHHHHHHHHHHhcCCC-
Q 036107           89 TDVDKVSEILRKRYPSPDKVVEALKCFCFTWAK--TQTGYM-HTPE-TYNAMVEALGKSKKFGLMWELVKEIDELSNGY-  163 (441)
Q Consensus        89 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~g~~-p~~~-~y~~li~~~~~~~~~~~a~~l~~~m~~~~~~~-  163 (441)
                      |....+...|..+|...|+++.|..+|...-..  ...|.. |... ..+.+-..|...+++++|..+|+++....... 
T Consensus       196 P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~  275 (508)
T KOG1840|consen  196 PERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVF  275 (508)
T ss_pred             chHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhc
Confidence            333467777889999999999999999844333  233422 2222 23334567788899999999999988643110 


Q ss_pred             -ccHHHHHHHHhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHh----hh---CCCCcHH-HHHHHHHHHHhcCCHHHHHHH
Q 036107          164 -VSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKF----KD---CISLSSQ-IFDVLIHGWCKTRKSDYAQKA  234 (441)
Q Consensus       164 -~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~----~~---~~~~~~~-~~~~li~~~~~~~~~~~a~~~  234 (441)
                       ..+..        -..+++.|-.+|.+.|++++|...++..    ++   ...|.+. -++.+...++..+.+++|..+
T Consensus       276 G~~h~~--------va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l  347 (508)
T KOG1840|consen  276 GEDHPA--------VAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKL  347 (508)
T ss_pred             CCCCHH--------HHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHH
Confidence             11000        2356777777899999999999988765    22   1223332 256677788889999999998


Q ss_pred             HHHHhhC---CCCCC----HhhHHHHHHHHHhcCCHHHHHHHHHHHHHc----CC--CC-CHHHHHHHHHHHHhcCCHHH
Q 036107          235 MKEMFQH---GFSPD----GVSYTCFIEHYCREKDFRKVDYTLKEMQEK----GC--KP-SVITCTIVMHALEKAKQIYE  300 (441)
Q Consensus       235 ~~~m~~~---g~~p~----~~~~~~li~~~~~~g~~~~a~~l~~~m~~~----g~--~p-~~~~~~~ll~~~~~~~~~~~  300 (441)
                      +....+.   -+.++    ..+++.|-..|...|++++|.++|++..+.    +-  .+ ....++.|-..|.+.+++++
T Consensus       348 ~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~  427 (508)
T KOG1840|consen  348 LQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEE  427 (508)
T ss_pred             HHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccch
Confidence            8766532   11222    368999999999999999999999987542    11  22 24567888899999999999


Q ss_pred             HHHHHHHHhh----CCCC-CCHHHHHHHHHHHHhcCccchHHHHHHHHHhcCChhHHHHHHHHHH
Q 036107          301 ALKVYEKMKS----DDCL-TDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIE  360 (441)
Q Consensus       301 a~~~~~~m~~----~g~~-~~~~~~~~li~~~~~~g~~~~~~~li~~~~~~g~~~~a~~~~~~m~  360 (441)
                      |.++|.+...    .|.. |+..               .+|..|...|.+.|+++.|+++.+...
T Consensus       428 a~~l~~~~~~i~~~~g~~~~~~~---------------~~~~nL~~~Y~~~g~~e~a~~~~~~~~  477 (508)
T KOG1840|consen  428 AEQLFEEAKDIMKLCGPDHPDVT---------------YTYLNLAALYRAQGNYEAAEELEEKVL  477 (508)
T ss_pred             HHHHHHHHHHHHHHhCCCCCchH---------------HHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence            9999987543    3332 2332               358889999999999999999987764

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=98.84  E-value=3.1e-06  Score=84.25  Aligned_cols=275  Identities=13%  Similarity=0.072  Sum_probs=188.4

Q ss_pred             HhhhcCchhhHHHHHHHHHhcCCChHHHHHHHhhhhhHhhhhcCCCCCCH-------HHHHHHHHHHHcCCChhHHHHHH
Q 036107           81 HALSEDHETDVDKVSEILRKRYPSPDKVVEALKCFCFTWAKTQTGYMHTP-------ETYNAMVEALGKSKKFGLMWELV  153 (441)
Q Consensus        81 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~g~~p~~-------~~y~~li~~~~~~~~~~~a~~l~  153 (441)
                      .+.+.+....+ .+.|-+...+-..|.+..|+..|+........-..+|.       .-||. -..+-..++++.|.+++
T Consensus       442 ~L~~~~~~ip~-E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNl-arl~E~l~~~~~A~e~Y  519 (1018)
T KOG2002|consen  442 ILESKGKQIPP-EVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNL-ARLLEELHDTEVAEEMY  519 (1018)
T ss_pred             HHHHcCCCCCH-HHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHH-HHHHHhhhhhhHHHHHH
Confidence            33444444443 45666666666777777777777643333111112222       12332 23334446777788888


Q ss_pred             HHHHHhcCCCccHHHHHHHHhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcHHHHHHHHHHHHhcCCHHHHHH
Q 036107          154 KEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQK  233 (441)
Q Consensus       154 ~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~  233 (441)
                      ..+.+..|++.              ..|-.+.-..-..+...+|...+...-.....+...++.+-..|.+...+..|.+
T Consensus       520 k~Ilkehp~YI--------------d~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k  585 (1018)
T KOG2002|consen  520 KSILKEHPGYI--------------DAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKK  585 (1018)
T ss_pred             HHHHHHCchhH--------------HHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhccccc
Confidence            87777554432              2333333333345788888888888755555555567777778888889998988


Q ss_pred             HHHHHhhC-CCCCCHhhHHHHHHHHHh------------cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH
Q 036107          234 AMKEMFQH-GFSPDGVSYTCFIEHYCR------------EKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYE  300 (441)
Q Consensus       234 ~~~~m~~~-g~~p~~~~~~~li~~~~~------------~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~  300 (441)
                      -|+...+. -..+|+.+.-+|-+.|.+            .+..++|+++|.+..+...+ |.+.-|.+--.++..|++++
T Consensus       586 ~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpk-N~yAANGIgiVLA~kg~~~~  664 (1018)
T KOG2002|consen  586 KFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPK-NMYAANGIGIVLAEKGRFSE  664 (1018)
T ss_pred             HHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcc-hhhhccchhhhhhhccCchH
Confidence            77666543 122566666666665543            34577899999998876443 77888888888999999999


Q ss_pred             HHHHHHHHhhCCC-CCCHHHHHHHHHHHHhcCccchHHHHHHHHHhcCChhHHHHHHHHHH-HcCCCCCHHHHHHHHHHH
Q 036107          301 ALKVYEKMKSDDC-LTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIE-EDSCKPDCETHARSLKMC  378 (441)
Q Consensus       301 a~~~~~~m~~~g~-~~~~~~~~~li~~~~~~g~~~~~~~li~~~~~~g~~~~a~~~~~~m~-~~g~~p~~~t~~~li~~~  378 (441)
                      |..||.+..+... .+|                  +|-.+-+.|+..|++..|+++|+... ...-+-+....+-|-+++
T Consensus       665 A~dIFsqVrEa~~~~~d------------------v~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~  726 (1018)
T KOG2002|consen  665 ARDIFSQVREATSDFED------------------VWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAW  726 (1018)
T ss_pred             HHHHHHHHHHHHhhCCc------------------eeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHH
Confidence            9999999998765 333                  38899999999999999999998754 555566778888899999


Q ss_pred             HhcCChhhHHHH
Q 036107          379 CHKKRMKDGMLV  390 (441)
Q Consensus       379 ~~~g~~~~a~~~  390 (441)
                      -+.|.+.+|.+.
T Consensus       727 y~~~~~~eak~~  738 (1018)
T KOG2002|consen  727 YEAGKLQEAKEA  738 (1018)
T ss_pred             HHhhhHHHHHHH
Confidence            999999999874

>PF12854 PPR_1: PPR repeat

Probab=98.84  E-value=5.3e-09  Score=60.78  Aligned_cols=34  Identities=32%  Similarity=0.730  Sum_probs=32.4

Q ss_pred             cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 036107          276 KGCKPSVITCTIVMHALEKAKQIYEALKVYEKMK  309 (441)
Q Consensus       276 ~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~  309 (441)
                      .|+.||..||++||++|++.|++++|.++|++|+
T Consensus         1 ~G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~   34 (34)
T PF12854_consen    1 RGCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK   34 (34)
T ss_pred             CCCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence            4899999999999999999999999999999984

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.81  E-value=3.6e-06  Score=76.92  Aligned_cols=260  Identities=11%  Similarity=0.025  Sum_probs=147.7

Q ss_pred             HHHcCCChhHHHHHHHHHHHhcCCCccHHHHHHHHhhcCHHHHHHHHHHHHh-cCCHHHHHHHHHHhhhCCCCcHHHHHH
Q 036107          139 ALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVK-RNSVAHAYKVFLKFKDCISLSSQIFDV  217 (441)
Q Consensus       139 ~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~-~g~~~~a~~~~~~~~~~~~~~~~~~~~  217 (441)
                      -+.++|+++.|.+++.-..+..+...+            ...-|.-+--|.+ -.++..|.+.-+..-+.-+-+......
T Consensus       428 ~~lk~~d~~~aieilkv~~~kdnk~~s------------aaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~n  495 (840)
T KOG2003|consen  428 ELLKNGDIEGAIEILKVFEKKDNKTAS------------AAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTN  495 (840)
T ss_pred             HHHhccCHHHHHHHHHHHHhccchhhH------------HHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhc
Confidence            467889999999999888876522221            1111111111222 234444444443332111111111111


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHH---HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 036107          218 LIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIE---HYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEK  294 (441)
Q Consensus       218 li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~---~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~  294 (441)
                      --+...-+|++++|.+.|.+....    |..+-.+|.+   .+-..|++++|++.|-.+..- +.-+.....-+.+.|--
T Consensus       496 kgn~~f~ngd~dka~~~ykeal~n----dasc~ealfniglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~  570 (840)
T KOG2003|consen  496 KGNIAFANGDLDKAAEFYKEALNN----DASCTEALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYEL  570 (840)
T ss_pred             CCceeeecCcHHHHHHHHHHHHcC----chHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHH
Confidence            111122346666666666666543    2222222221   234456666666666555332 11244455555556666


Q ss_pred             cCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCcc------------------chHHHHHHHHHhcCChhHHHHHH
Q 036107          295 AKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRF------------------LIYNTMISSACVRSEEGNALKLR  356 (441)
Q Consensus       295 ~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~------------------~~~~~li~~~~~~g~~~~a~~~~  356 (441)
                      ..++..|.+++.+.... ++.|..+...|-+.|-+.|+.                  .+...|-.-|....-+++++..|
T Consensus       571 led~aqaie~~~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~  649 (840)
T KOG2003|consen  571 LEDPAQAIELLMQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYF  649 (840)
T ss_pred             hhCHHHHHHHHHHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHH
Confidence            66666666666554432 344555666666666666655                  33444556667777788999999


Q ss_pred             HHHHHcCCCCCHHHHHHHHHHHH-hcCChhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCc
Q 036107          357 QKIEEDSCKPDCETHARSLKMCC-HKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEKKSLG  422 (441)
Q Consensus       357 ~~m~~~g~~p~~~t~~~li~~~~-~~g~~~~a~~~~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~  422 (441)
                      ++.-  -++|+..-|-.+|..|. +.|++.+|.+   ++++. .+.++-|......|++.+...|..
T Consensus       650 ekaa--liqp~~~kwqlmiasc~rrsgnyqka~d---~yk~~-hrkfpedldclkflvri~~dlgl~  710 (840)
T KOG2003|consen  650 EKAA--LIQPNQSKWQLMIASCFRRSGNYQKAFD---LYKDI-HRKFPEDLDCLKFLVRIAGDLGLK  710 (840)
T ss_pred             HHHH--hcCccHHHHHHHHHHHHHhcccHHHHHH---HHHHH-HHhCccchHHHHHHHHHhccccch
Confidence            8753  46999999999888665 6799999966   45443 336788888999999988887743

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=98.81  E-value=8.9e-06  Score=80.49  Aligned_cols=361  Identities=11%  Similarity=0.024  Sum_probs=245.3

Q ss_pred             cchhcccccCccchhccCCCCCCCCcccccchhhHHHhhhhchhhHHHHHhhhcCchhhHHHHHHHHHhcCCChHHHHHH
Q 036107           32 RHCITNELTGLPSWLKFFDTQSPDEDFVIPSLASWVESLKLNEQSRISSHALSEDHETDVDKVSEILRKRYPSPDKVVEA  111 (441)
Q Consensus        32 ~~~~~~~a~~l~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A  111 (441)
                      +|++. +|.++..-.-+..+.  ....|.++-...-+.|+.+.+...  .+...+..|.....+..+.....+.|.+..|
T Consensus       152 rg~~e-eA~~i~~EvIkqdp~--~~~ay~tL~~IyEqrGd~eK~l~~--~llAAHL~p~d~e~W~~ladls~~~~~i~qA  226 (895)
T KOG2076|consen  152 RGDLE-EAEEILMEVIKQDPR--NPIAYYTLGEIYEQRGDIEKALNF--WLLAAHLNPKDYELWKRLADLSEQLGNINQA  226 (895)
T ss_pred             hCCHH-HHHHHHHHHHHhCcc--chhhHHHHHHHHHHcccHHHHHHH--HHHHHhcCCCChHHHHHHHHHHHhcccHHHH
Confidence            47776 777777633333222  234455555555566655554443  3444444444446777777888889999999


Q ss_pred             HhhhhhHhhhhcCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHhcCCCccHHHHHHHHhhcCHHHHHHHHHHHHhc
Q 036107          112 LKCFCFTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKR  191 (441)
Q Consensus       112 ~~~~~~~~~~~~~g~~p~~~~y~~li~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~  191 (441)
                      .-.|...-..    ..++...+-.-+..|-+.|+...|.+.|.++....| ++++.-+.        ..-...++.+...
T Consensus       227 ~~cy~rAI~~----~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p-~~d~er~~--------d~i~~~~~~~~~~  293 (895)
T KOG2076|consen  227 RYCYSRAIQA----NPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDP-PVDIERIE--------DLIRRVAHYFITH  293 (895)
T ss_pred             HHHHHHHHhc----CCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCC-chhHHHHH--------HHHHHHHHHHHHh
Confidence            9888533222    223455555567789999999999999999998763 22222111        1223346667777


Q ss_pred             CCHHHHHHHHHHhhh--CCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCC--------------------------
Q 036107          192 NSVAHAYKVFLKFKD--CISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGF--------------------------  243 (441)
Q Consensus       192 g~~~~a~~~~~~~~~--~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~--------------------------  243 (441)
                      ++.+.|.+.++..-.  +-..+...++.++..|.+...++.|.....++.....                          
T Consensus       294 ~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~  373 (895)
T KOG2076|consen  294 NERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKE  373 (895)
T ss_pred             hHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCC
Confidence            888999999887632  5566777899999999999999999999988877222                          


Q ss_pred             -CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHH
Q 036107          244 -SPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKP--SVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFY  320 (441)
Q Consensus       244 -~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p--~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~  320 (441)
                       .++..+ --++-+....+..+....+.....+....|  +...|.-+..++...|++.+|..+|..+...-.--+..  
T Consensus       374 ~s~~l~v-~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~--  450 (895)
T KOG2076|consen  374 LSYDLRV-IRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAF--  450 (895)
T ss_pred             CCccchh-HhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchh--
Confidence             222222 122334445555566666666666666443  46778899999999999999999999998764333333  


Q ss_pred             HHHHHHHHhcCccchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHhcCChhhHHHHHHHHHHH--
Q 036107          321 SSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCE-THARSLKMCCHKKRMKDGMLVLNLMREM--  397 (441)
Q Consensus       321 ~~li~~~~~~g~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~-t~~~li~~~~~~g~~~~a~~~~~~~~~m--  397 (441)
                                    .|-.+-.+|-..|.+++|++.|+.....  .|+.. .-.+|-..+-+.|+.++|.+   .+.++  
T Consensus       451 --------------vw~~~a~c~~~l~e~e~A~e~y~kvl~~--~p~~~D~Ri~Lasl~~~~g~~EkalE---tL~~~~~  511 (895)
T KOG2076|consen  451 --------------VWYKLARCYMELGEYEEAIEFYEKVLIL--APDNLDARITLASLYQQLGNHEKALE---TLEQIIN  511 (895)
T ss_pred             --------------hhHHHHHHHHHHhhHHHHHHHHHHHHhc--CCCchhhhhhHHHHHHhcCCHHHHHH---HHhcccC
Confidence                          3888999999999999999999998754  55543 23344456678899999866   55553  


Q ss_pred             ------HHCCCCCCHHHHHHHHHHHHhcCCccHHHHHHHHH
Q 036107          398 ------LSKGIVPQESTHKMLAEELEKKSLGNAKERIDELL  432 (441)
Q Consensus       398 ------~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m  432 (441)
                            ...++.|+...-....+.+...|+.++-..+..+|
T Consensus       512 ~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi~t~~~L  552 (895)
T KOG2076|consen  512 PDGRNAEACAWEPERRILAHRCDILFQVGKREEFINTASTL  552 (895)
T ss_pred             CCccchhhccccHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence                  23457777888788888889999888866655554

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=98.81  E-value=3.3e-05  Score=72.90  Aligned_cols=278  Identities=9%  Similarity=-0.062  Sum_probs=168.1

Q ss_pred             HHHHHHHHHHHcCCChhHHHHHHHHHHHhcCCCccHHHHHHHHhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCC
Q 036107          131 ETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISL  210 (441)
Q Consensus       131 ~~y~~li~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~  210 (441)
                      ..|..+-..+...|+.+.+...+....+..+...+           ...........+...|++++|.+++++.-...+.
T Consensus         7 ~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~   75 (355)
T cd05804           7 LGHAAAALLLLLGGERPAAAAKAAAAAQALAARAT-----------ERERAHVEALSAWIAGDLPKALALLEQLLDDYPR   75 (355)
T ss_pred             HHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCC-----------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC
Confidence            35555666666677788877666665554322221           1122223334556789999999999887544444


Q ss_pred             cHHHHHHHHHHHH----hcCCHHHHHHHHHHHhhCCCCCCH-hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 036107          211 SSQIFDVLIHGWC----KTRKSDYAQKAMKEMFQHGFSPDG-VSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITC  285 (441)
Q Consensus       211 ~~~~~~~li~~~~----~~~~~~~a~~~~~~m~~~g~~p~~-~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~  285 (441)
                      +...+.. ...+.    ..+..+.+.+.++.  ..+..|+. .....+-..+...|++++|...+++..+.. +.+...+
T Consensus        76 ~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~  151 (355)
T cd05804          76 DLLALKL-HLGAFGLGDFSGMRDHVARVLPL--WAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAV  151 (355)
T ss_pred             cHHHHHH-hHHHHHhcccccCchhHHHHHhc--cCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHH
Confidence            5545542 22222    24555566666654  11222333 344455567888999999999999998864 3356778


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHhhCCC-CCCHHHHHHHHHHHHhcCccchHHHHHHHHHhcCChhHHHHHHHHHHHcCC
Q 036107          286 TIVMHALEKAKQIYEALKVYEKMKSDDC-LTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSC  364 (441)
Q Consensus       286 ~~ll~~~~~~~~~~~a~~~~~~m~~~g~-~~~~~~~~~li~~~~~~g~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~  364 (441)
                      ..+-..+...|++++|...+++..+..- .|+...              ..|..+...+...|+.++|+.++++......
T Consensus       152 ~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~--------------~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~  217 (355)
T cd05804         152 HAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRG--------------HNWWHLALFYLERGDYEAALAIYDTHIAPSA  217 (355)
T ss_pred             HHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhH--------------HHHHHHHHHHHHCCCHHHHHHHHHHHhcccc
Confidence            8888899999999999999998876432 222211              1256677888999999999999999854322


Q ss_pred             -CCCHHHH-H--HHHHHHHhcCChhhHHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhhh
Q 036107          365 -KPDCETH-A--RSLKMCCHKKRMKDGMLVLNLMREMLSKGI--VPQESTHKMLAEELEKKSLGNAKERIDELLTHATEQ  438 (441)
Q Consensus       365 -~p~~~t~-~--~li~~~~~~g~~~~a~~~~~~~~~m~~~~~--~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~  438 (441)
                       .+..... +  .++.-+...|..+.+.+ |+.+........  ......-.....++...|+.++|..+++.+....+.
T Consensus       218 ~~~~~~~~~~~~~~l~~~~~~g~~~~~~~-w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~  296 (355)
T cd05804         218 ESDPALDLLDAASLLWRLELAGHVDVGDR-WEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASS  296 (355)
T ss_pred             CCChHHHHhhHHHHHHHHHhcCCCChHHH-HHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhc
Confidence             2222211 1  33344445555554444 322322211111  111222235666778899999999999998776543

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=98.77  E-value=4.8e-05  Score=71.82  Aligned_cols=270  Identities=9%  Similarity=-0.031  Sum_probs=159.9

Q ss_pred             HHHHcCCChhHHHHHHHHHHHhcCCCccHHHHHHHHhhcCHHHHHH---HHHHHHhcCCHHHHHHHHHHhhhCCCCcHHH
Q 036107          138 EALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSV---LMDTLVKRNSVAHAYKVFLKFKDCISLSSQI  214 (441)
Q Consensus       138 ~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~---li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~  214 (441)
                      ..+...|++++|.+++++..+..|.              |...+..   ........+..+.+.+.+.......+.....
T Consensus        51 ~~~~~~g~~~~A~~~~~~~l~~~P~--------------~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  116 (355)
T cd05804          51 LSAWIAGDLPKALALLEQLLDDYPR--------------DLLALKLHLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYL  116 (355)
T ss_pred             HHHHHcCCHHHHHHHHHHHHHHCCC--------------cHHHHHHhHHHHHhcccccCchhHHHHHhccCcCCCCcHHH
Confidence            3456779999999999998875422              3333332   1112223455666666665532233333444


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCCH--HHHHHHHHH
Q 036107          215 FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGC-KPSV--ITCTIVMHA  291 (441)
Q Consensus       215 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~-~p~~--~~~~~ll~~  291 (441)
                      ...+...+...|++++|.+.+++..+.. +.+...+..+-..+...|++++|...+++..+... .|+.  ..|..+...
T Consensus       117 ~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~  195 (355)
T cd05804         117 LGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALF  195 (355)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHH
Confidence            5556678889999999999999999864 33456778888899999999999999999876532 2332  346678888


Q ss_pred             HHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCccchHHHHHHHHHhcCChhHHHHH--HHHHHHcCC--CCC
Q 036107          292 LEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKL--RQKIEEDSC--KPD  367 (441)
Q Consensus       292 ~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~~~li~~~~~~g~~~~a~~~--~~~m~~~g~--~p~  367 (441)
                      +...|++++|..++++.......+....  .+.          ....++.-+...|....+.+.  +........  ...
T Consensus       196 ~~~~G~~~~A~~~~~~~~~~~~~~~~~~--~~~----------~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~  263 (355)
T cd05804         196 YLERGDYEAALAIYDTHIAPSAESDPAL--DLL----------DAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGL  263 (355)
T ss_pred             HHHCCCHHHHHHHHHHHhccccCCChHH--HHh----------hHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccc
Confidence            9999999999999999864332111110  000          000222233333433333222  111111110  111


Q ss_pred             HHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHC---CCCCCHHHHHHHHHH--HHhcCCccHHHHHHHHHHH
Q 036107          368 CETHARSLKMCCHKKRMKDGMLVLNLMREMLSK---GIVPQESTHKMLAEE--LEKKSLGNAKERIDELLTH  434 (441)
Q Consensus       368 ~~t~~~li~~~~~~g~~~~a~~~~~~~~~m~~~---~~~p~~~~~~~ll~~--~~~~g~~~~a~~~~~~m~~  434 (441)
                      .........++...|+.+.|..+++-+....+.   .-.....+-..++.+  +.+.|++++|.+.+.....
T Consensus       264 ~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~  335 (355)
T cd05804         264 AFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRD  335 (355)
T ss_pred             hHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            222235667778889999998866555443333   111111223333444  4588999999988876543

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=98.76  E-value=9.8e-06  Score=78.76  Aligned_cols=292  Identities=11%  Similarity=0.059  Sum_probs=194.7

Q ss_pred             hcCCChHHHHHHHhhhhhHhhhhcCCCCCCH-HHHHHHHHHHHcCCChhHHHHHHHHHHHhcCCCccHHHHHHHHhhcCH
Q 036107          100 KRYPSPDKVVEALKCFCFTWAKTQTGYMHTP-ETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDT  178 (441)
Q Consensus       100 ~~~~~~g~~~~A~~~~~~~~~~~~~g~~p~~-~~y~~li~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~  178 (441)
                      .++...|+.++|++.+..     .....+|. ......-..+.+.|+.++|..++..+...+|.              +.
T Consensus        12 ~il~e~g~~~~AL~~L~~-----~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPd--------------n~   72 (517)
T PF12569_consen   12 SILEEAGDYEEALEHLEK-----NEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPD--------------NY   72 (517)
T ss_pred             HHHHHCCCHHHHHHHHHh-----hhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC--------------cH
Confidence            344667999999998842     22333454 45667778889999999999999999986522              33


Q ss_pred             HHHHHHHHHHHh-----cCCHHHHHHHHHHhhhCCCCcHHHHHHHHHHHHhcCCHH-HHHHHHHHHhhCCCCCCHhhHHH
Q 036107          179 RAMSVLMDTLVK-----RNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSD-YAQKAMKEMFQHGFSPDGVSYTC  252 (441)
Q Consensus       179 ~~~~~li~~~~~-----~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~-~a~~~~~~m~~~g~~p~~~~~~~  252 (441)
                      .-|..+..+..-     ....+...++|+++.... |.......+.-.+..-..+. .+...+..+...|++   .+|+.
T Consensus        73 ~Yy~~L~~~~g~~~~~~~~~~~~~~~~y~~l~~~y-p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvP---slF~~  148 (517)
T PF12569_consen   73 DYYRGLEEALGLQLQLSDEDVEKLLELYDELAEKY-PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVP---SLFSN  148 (517)
T ss_pred             HHHHHHHHHHhhhcccccccHHHHHHHHHHHHHhC-ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCc---hHHHH
Confidence            444444454422     236788888998885544 43333333333333222332 455566777777764   34666


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHc----C----------CCCCHH--HHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC
Q 036107          253 FIEHYCREKDFRKVDYTLKEMQEK----G----------CKPSVI--TCTIVMHALEKAKQIYEALKVYEKMKSDDCLTD  316 (441)
Q Consensus       253 li~~~~~~g~~~~a~~l~~~m~~~----g----------~~p~~~--~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~  316 (441)
                      |-.-|....+.+-..+++......    |          -+|+..  ++.-+-+.|...|++++|.++.+..++.  .|+
T Consensus       149 lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h--tPt  226 (517)
T PF12569_consen  149 LKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH--TPT  226 (517)
T ss_pred             HHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--CCC
Confidence            666666666666666666665432    1          234443  4466678899999999999999999887  354


Q ss_pred             HHHHHHHHHHHHhcCccchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHH
Q 036107          317 TSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMRE  396 (441)
Q Consensus       317 ~~~~~~li~~~~~~g~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~~~~  396 (441)
                      ..               ..|..-...|-+.|++.+|.+.++...... .-|.+.=+-....+.+.|++++|.+++.+|.+
T Consensus       227 ~~---------------ely~~KarilKh~G~~~~Aa~~~~~Ar~LD-~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr  290 (517)
T PF12569_consen  227 LV---------------ELYMTKARILKHAGDLKEAAEAMDEARELD-LADRYINSKCAKYLLRAGRIEEAEKTASLFTR  290 (517)
T ss_pred             cH---------------HHHHHHHHHHHHCCCHHHHHHHHHHHHhCC-hhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcC
Confidence            33               227777778889999999999999887654 44666777778888899999999998777765


Q ss_pred             HHHCCCCCCHHH--------HHHHHHHHHhcCCccHHHHHHHHHHHH
Q 036107          397 MLSKGIVPQEST--------HKMLAEELEKKSLGNAKERIDELLTHA  435 (441)
Q Consensus       397 m~~~~~~p~~~~--------~~~ll~~~~~~g~~~~a~~~~~~m~~~  435 (441)
                         .+..|-...        ..-.-.+|.+.|++..|.+-+..+.+.
T Consensus       291 ---~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~  334 (517)
T PF12569_consen  291 ---EDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLKH  334 (517)
T ss_pred             ---CCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence               332332211        133446678899999999888776654

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.75  E-value=1.8e-06  Score=75.66  Aligned_cols=227  Identities=9%  Similarity=-0.032  Sum_probs=155.3

Q ss_pred             HHHHHHHHcCCChhHHHHHHHHHHHhcCCCccHHHHHHHHhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcHH
Q 036107          134 NAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQ  213 (441)
Q Consensus       134 ~~li~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~  213 (441)
                      +-+-++|.+.|-+.+|..-|..-.+..               +-+.||..|-.+|.+..+.+.|+.+|.+--+.++-++.
T Consensus       227 ~Q~gkCylrLgm~r~AekqlqssL~q~---------------~~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT  291 (478)
T KOG1129|consen  227 QQMGKCYLRLGMPRRAEKQLQSSLTQF---------------PHPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVT  291 (478)
T ss_pred             HHHHHHHHHhcChhhhHHHHHHHhhcC---------------CchhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhh
Confidence            345566777788888887777655522               25567777788888888888888888776555555554


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 036107          214 IFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALE  293 (441)
Q Consensus       214 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~  293 (441)
                      ....+-+.+-..++.++|.++|+...+.. ..++....++-.+|.-.++.+.|+..++++.+.|+. +...|+.+--+|.
T Consensus       292 ~l~g~ARi~eam~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~  369 (478)
T KOG1129|consen  292 YLLGQARIHEAMEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCL  369 (478)
T ss_pred             hhhhhHHHHHHHHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHH
Confidence            44555666777778888888888776542 335666667777777788888888888888888876 6777777777788


Q ss_pred             hcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCccchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHH
Q 036107          294 KAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHAR  373 (441)
Q Consensus       294 ~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~  373 (441)
                      -.+++|-+..-|.+....--.|+...              .+|-.+-...+..|+...|.+.|+-..... .-+...++.
T Consensus       370 yaqQ~D~~L~sf~RAlstat~~~~aa--------------DvWYNlg~vaV~iGD~nlA~rcfrlaL~~d-~~h~ealnN  434 (478)
T KOG1129|consen  370 YAQQIDLVLPSFQRALSTATQPGQAA--------------DVWYNLGFVAVTIGDFNLAKRCFRLALTSD-AQHGEALNN  434 (478)
T ss_pred             hhcchhhhHHHHHHHHhhccCcchhh--------------hhhhccceeEEeccchHHHHHHHHHHhccC-cchHHHHHh
Confidence            88888888877777665433333322              235556566666777788887777765443 223456666


Q ss_pred             HHHHHHhcCChhhHHHHHH
Q 036107          374 SLKMCCHKKRMKDGMLVLN  392 (441)
Q Consensus       374 li~~~~~~g~~~~a~~~~~  392 (441)
                      |--.-.+.|++++|+.+++
T Consensus       435 LavL~~r~G~i~~Arsll~  453 (478)
T KOG1129|consen  435 LAVLAARSGDILGARSLLN  453 (478)
T ss_pred             HHHHHhhcCchHHHHHHHH
Confidence            6666667788888877444

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.75  E-value=9.9e-06  Score=74.15  Aligned_cols=208  Identities=12%  Similarity=0.038  Sum_probs=155.5

Q ss_pred             cCCChhHHHHHHHHHHHhcCCCccHHHHHHHHhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcHHHHHHHHHH
Q 036107          142 KSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHG  221 (441)
Q Consensus       142 ~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~  221 (441)
                      -+|++++|.+.+.+.....             ..+....||+ --.+-..|++++|++.|-.+..-+.-+..+.-.+.+.
T Consensus       502 ~ngd~dka~~~ykeal~nd-------------asc~ealfni-glt~e~~~~ldeald~f~klh~il~nn~evl~qiani  567 (840)
T KOG2003|consen  502 ANGDLDKAAEFYKEALNND-------------ASCTEALFNI-GLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANI  567 (840)
T ss_pred             ecCcHHHHHHHHHHHHcCc-------------hHHHHHHHHh-cccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence            3578888888888877643             1112223332 2245567999999999988866556677777778888


Q ss_pred             HHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 036107          222 WCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEA  301 (441)
Q Consensus       222 ~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a  301 (441)
                      |--..+...|.+++-+.... ++-|+.....|-.-|-+.|+-.+|.+.+-+--. -.+.|..|...|-..|....-++++
T Consensus       568 ye~led~aqaie~~~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyr-yfp~nie~iewl~ayyidtqf~eka  645 (840)
T KOG2003|consen  568 YELLEDPAQAIELLMQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYR-YFPCNIETIEWLAAYYIDTQFSEKA  645 (840)
T ss_pred             HHHhhCHHHHHHHHHHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhccc-ccCcchHHHHHHHHHHHhhHHHHHH
Confidence            88888888999988776553 555778888888999999999999887655432 3566788888888888888888999


Q ss_pred             HHHHHHHhhCCCCCCHHHHHHHHHHHHhcCccchHHHHHH-HHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 036107          302 LKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMIS-SACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCH  380 (441)
Q Consensus       302 ~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~~~li~-~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~  380 (441)
                      ..+|+...-  +.|+..-                |..||. ++.+.|++++|.++++.... .+.-|......|++.|..
T Consensus       646 i~y~ekaal--iqp~~~k----------------wqlmiasc~rrsgnyqka~d~yk~~hr-kfpedldclkflvri~~d  706 (840)
T KOG2003|consen  646 INYFEKAAL--IQPNQSK----------------WQLMIASCFRRSGNYQKAFDLYKDIHR-KFPEDLDCLKFLVRIAGD  706 (840)
T ss_pred             HHHHHHHHh--cCccHHH----------------HHHHHHHHHHhcccHHHHHHHHHHHHH-hCccchHHHHHHHHHhcc
Confidence            999987654  5677765                777775 44567999999999999764 467788888889998888


Q ss_pred             cCCh
Q 036107          381 KKRM  384 (441)
Q Consensus       381 ~g~~  384 (441)
                      .|.-
T Consensus       707 lgl~  710 (840)
T KOG2003|consen  707 LGLK  710 (840)
T ss_pred             ccch
Confidence            8753

>PRK11189 lipoprotein NlpI; Provisional

Probab=98.67  E-value=5e-05  Score=69.47  Aligned_cols=210  Identities=13%  Similarity=0.006  Sum_probs=141.9

Q ss_pred             HHHHHHHHHHHHcCCChhHHHHHHHHHHHhcCCCccHHHHHHHHhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCC
Q 036107          130 PETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCIS  209 (441)
Q Consensus       130 ~~~y~~li~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~  209 (441)
                      ...|..+-..+.+.|++++|...|++..+..+.              +...|+.+-..+...|++++|.+.|+..-+..+
T Consensus        64 a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~--------------~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P  129 (296)
T PRK11189         64 AQLHYERGVLYDSLGLRALARNDFSQALALRPD--------------MADAYNYLGIYLTQAGNFDAAYEAFDSVLELDP  129 (296)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCC--------------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence            356777777888999999999999998885532              678999999999999999999999988855444


Q ss_pred             CcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 036107          210 LSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVM  289 (441)
Q Consensus       210 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll  289 (441)
                      -+...|..+..++...|++++|.+.|+...+.  .|+..........+...++.++|...|++..... .|+...+ .  
T Consensus       130 ~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~--~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~-~~~~~~~-~--  203 (296)
T PRK11189        130 TYNYAYLNRGIALYYGGRYELAQDDLLAFYQD--DPNDPYRALWLYLAESKLDPKQAKENLKQRYEKL-DKEQWGW-N--  203 (296)
T ss_pred             CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhC-CccccHH-H--
Confidence            56777888888899999999999999998874  3544322222223445678999999997755432 2332222 2  


Q ss_pred             HHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCccchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHH
Q 036107          290 HALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCE  369 (441)
Q Consensus       290 ~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~  369 (441)
                      ......|+.+.+ +.+..+.+.. ..+...-...-         ..|..+-..+.+.|++++|+..|++..+.. .||..
T Consensus       204 ~~~~~lg~~~~~-~~~~~~~~~~-~~~~~l~~~~~---------ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~-~~~~~  271 (296)
T PRK11189        204 IVEFYLGKISEE-TLMERLKAGA-TDNTELAERLC---------ETYFYLAKYYLSLGDLDEAAALFKLALANN-VYNFV  271 (296)
T ss_pred             HHHHHccCCCHH-HHHHHHHhcC-CCcHHHHHHHH---------HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CchHH
Confidence            223345666554 3555554321 11111000111         237778888899999999999999988654 33444


Q ss_pred             HH
Q 036107          370 TH  371 (441)
Q Consensus       370 t~  371 (441)
                      -+
T Consensus       272 e~  273 (296)
T PRK11189        272 EH  273 (296)
T ss_pred             HH
Confidence            33

>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]

Probab=98.67  E-value=0.00018  Score=66.65  Aligned_cols=340  Identities=11%  Similarity=0.057  Sum_probs=196.6

Q ss_pred             HHhhhhchhhHHHHHhhhcCchhhHHHHHHHHHhcCCChHHHHHHHhhhhhHhhhhcCCCCCCHHHHHHHHHHHHcCCCh
Q 036107           67 VESLKLNEQSRISSHALSEDHETDVDKVSEILRKRYPSPDKVVEALKCFCFTWAKTQTGYMHTPETYNAMVEALGKSKKF  146 (441)
Q Consensus        67 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~g~~p~~~~y~~li~~~~~~~~~  146 (441)
                      .+.+...+|+-+++..+..=..  ++.+.--.+.+--..|++.-|.++|. .|.    ...|+...|++.|..-.+...+
T Consensus       118 mknk~vNhARNv~dRAvt~lPR--VdqlWyKY~ymEE~LgNi~gaRqife-rW~----~w~P~eqaW~sfI~fElRykei  190 (677)
T KOG1915|consen  118 MKNKQVNHARNVWDRAVTILPR--VDQLWYKYIYMEEMLGNIAGARQIFE-RWM----EWEPDEQAWLSFIKFELRYKEI  190 (677)
T ss_pred             HhhhhHhHHHHHHHHHHHhcch--HHHHHHHHHHHHHHhcccHHHHHHHH-HHH----cCCCcHHHHHHHHHHHHHhhHH
Confidence            3556788888888887765433  33444444445556678889999995 222    5679999999999999999999


Q ss_pred             hHHHHHHHHHHHhcCCCccHHHHHHHHhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCC---CCcHHHHHHHHHHHH
Q 036107          147 GLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCI---SLSSQIFDVLIHGWC  223 (441)
Q Consensus       147 ~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~~~~li~~~~  223 (441)
                      +.|.++++...-..               |++.+|--....=.++|.+..|.++|+...+.+   ..+...|.++...=.
T Consensus       191 eraR~IYerfV~~H---------------P~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe  255 (677)
T KOG1915|consen  191 ERARSIYERFVLVH---------------PKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDDEEAEILFVAFAEFEE  255 (677)
T ss_pred             HHHHHHHHHHheec---------------ccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence            99999999987633               244555555555555666666666665542211   111122222222222


Q ss_pred             hcCCHHHHHHHH--------------------------------------------HHHhhCCCCCCHhhHHHHHHHHHh
Q 036107          224 KTRKSDYAQKAM--------------------------------------------KEMFQHGFSPDGVSYTCFIEHYCR  259 (441)
Q Consensus       224 ~~~~~~~a~~~~--------------------------------------------~~m~~~g~~p~~~~~~~li~~~~~  259 (441)
                      ++..++.|.-+|                                            +++.+.+ +-|-.+|--.+.--..
T Consensus       256 ~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~n-p~nYDsWfdylrL~e~  334 (677)
T KOG1915|consen  256 RQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKN-PYNYDSWFDYLRLEES  334 (677)
T ss_pred             HHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhC-CCCchHHHHHHHHHHh
Confidence            222333333222                                            2222211 2244555566666666


Q ss_pred             cCCHHHHHHHHHHHHHcCCCCCH-------HHHHHHHHHH---HhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHH--
Q 036107          260 EKDFRKVDYTLKEMQEKGCKPSV-------ITCTIVMHAL---EKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFIL--  327 (441)
Q Consensus       260 ~g~~~~a~~l~~~m~~~g~~p~~-------~~~~~ll~~~---~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~--  327 (441)
                      .|+.+...++|+..... ++|-.       ..|--+=-+|   ....+++.+.++|+...+ -++....|+..+=-+|  
T Consensus       335 ~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~-lIPHkkFtFaKiWlmyA~  412 (677)
T KOG1915|consen  335 VGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLD-LIPHKKFTFAKIWLMYAQ  412 (677)
T ss_pred             cCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh-hcCcccchHHHHHHHHHH
Confidence            78888888888887764 44421       1222111111   346788888888888777 2333444554442222  


Q ss_pred             -------------------HhcCccchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHH
Q 036107          328 -------------------SKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGM  388 (441)
Q Consensus       328 -------------------~~~g~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~  388 (441)
                                         +++.+..+|..-|..-.+.++++.+-+++++..+-+ .-|..+|......=...|+.+.|.
T Consensus       413 feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~-Pe~c~~W~kyaElE~~LgdtdRaR  491 (677)
T KOG1915|consen  413 FEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFS-PENCYAWSKYAELETSLGDTDRAR  491 (677)
T ss_pred             HHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-hHhhHHHHHHHHHHHHhhhHHHHH
Confidence                               222222455555666666677777777777776543 234455655555555667777777


Q ss_pred             HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHH
Q 036107          389 LVLNLMREMLSKGIVPQESTHKMLAEELEKKSLGNAKERIDELLTH  434 (441)
Q Consensus       389 ~~~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~  434 (441)
                      .+|++-.+  +.........|.+.|+-=...|.+++|..+++.+..
T Consensus       492 aifelAi~--qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~  535 (677)
T KOG1915|consen  492 AIFELAIS--QPALDMPELLWKAYIDFEIEEGEFEKARALYERLLD  535 (677)
T ss_pred             HHHHHHhc--CcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHH
Confidence            76665433  122223344555666655677888888888877543

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.66  E-value=1.1e-06  Score=77.02  Aligned_cols=231  Identities=9%  Similarity=0.021  Sum_probs=181.3

Q ss_pred             HHHHHHhcCCChHHHHHHHhhhhhHhhhhcCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHhcCCCccHHHHHHHH
Q 036107           94 VSEILRKRYPSPDKVVEALKCFCFTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVM  173 (441)
Q Consensus        94 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~g~~p~~~~y~~li~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~~~  173 (441)
                      .-+-+.++|.+.|.+.+|..-|+     ......|-+.||-.+-+.|.+..+++.|+.++.+-...   .|.        
T Consensus       225 Wk~Q~gkCylrLgm~r~Aekqlq-----ssL~q~~~~dTfllLskvY~ridQP~~AL~~~~~gld~---fP~--------  288 (478)
T KOG1129|consen  225 WKQQMGKCYLRLGMPRRAEKQLQ-----SSLTQFPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS---FPF--------  288 (478)
T ss_pred             HHHHHHHHHHHhcChhhhHHHHH-----HHhhcCCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc---CCc--------
Confidence            44456678888888888888774     22334577889999999999999999999999987763   231        


Q ss_pred             hhcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHH
Q 036107          174 RRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCF  253 (441)
Q Consensus       174 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l  253 (441)
                         |+.-..-....+-.-++.++|.++|...-+-.+.++.....+-..|.-.++++-|++.|.++.+.|+. +...|+.+
T Consensus       289 ---~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~Ni  364 (478)
T KOG1129|consen  289 ---DVTYLLGQARIHEAMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNI  364 (478)
T ss_pred             ---hhhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhH
Confidence               23233334556666799999999999985555667777777778888899999999999999999986 78889998


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcC
Q 036107          254 IEHYCREKDFRKVDYTLKEMQEKGCKPS--VITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAV  331 (441)
Q Consensus       254 i~~~~~~g~~~~a~~l~~~m~~~g~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g  331 (441)
                      --+|.-.+++|-++.-|.+....-..|+  ...|-.+-......|++..|.+.|+-....+-.- .              
T Consensus       365 gLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h-~--------------  429 (478)
T KOG1129|consen  365 GLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQH-G--------------  429 (478)
T ss_pred             HHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcch-H--------------
Confidence            8899999999999999998876544444  4567788888888999999999999888764322 1              


Q ss_pred             ccchHHHHHHHHHhcCChhHHHHHHHHHHH
Q 036107          332 RFLIYNTMISSACVRSEEGNALKLRQKIEE  361 (441)
Q Consensus       332 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  361 (441)
                        ..+|.+--.-.+.|++++|..+++....
T Consensus       430 --ealnNLavL~~r~G~i~~Arsll~~A~s  457 (478)
T KOG1129|consen  430 --EALNNLAVLAARSGDILGARSLLNAAKS  457 (478)
T ss_pred             --HHHHhHHHHHhhcCchHHHHHHHHHhhh
Confidence              2388888888899999999999988764

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=98.64  E-value=3.7e-05  Score=74.83  Aligned_cols=261  Identities=12%  Similarity=0.108  Sum_probs=180.0

Q ss_pred             HHHHHcCCChhHHHHHHHHHHHhcCCCccHHHHHHHHhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcHHHHH
Q 036107          137 VEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFD  216 (441)
Q Consensus       137 i~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~  216 (441)
                      ...+...|++++|++.++.-..   ..++           ...........+.+.|+.++|..+|..+-+..+.|..-|.
T Consensus        11 ~~il~e~g~~~~AL~~L~~~~~---~I~D-----------k~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~   76 (517)
T PF12569_consen   11 NSILEEAGDYEEALEHLEKNEK---QILD-----------KLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYR   76 (517)
T ss_pred             HHHHHHCCCHHHHHHHHHhhhh---hCCC-----------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHH
Confidence            3456888999999999987554   2221           3456677788889999999999999999655566666666


Q ss_pred             HHHHHHHhc-----CCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCH-HHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 036107          217 VLIHGWCKT-----RKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDF-RKVDYTLKEMQEKGCKPSVITCTIVMH  290 (441)
Q Consensus       217 ~li~~~~~~-----~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~-~~a~~l~~~m~~~g~~p~~~~~~~ll~  290 (441)
                      .+..+..-.     .+.+...++|+++...-  |.....-.+.-.+.....+ ..+...+..+...|++   .+|+.|-.
T Consensus        77 ~L~~~~g~~~~~~~~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvP---slF~~lk~  151 (517)
T PF12569_consen   77 GLEEALGLQLQLSDEDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVP---SLFSNLKP  151 (517)
T ss_pred             HHHHHHhhhcccccccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCc---hHHHHHHH
Confidence            777766333     25788889999987642  4444443333333332333 3456667777888886   45677766


Q ss_pred             HHHhcCCHHHHHHHHHHHhhC----CC----------CCCHHHHHHHHHHHHhcCccchHHHHHHHHHhcCChhHHHHHH
Q 036107          291 ALEKAKQIYEALKVYEKMKSD----DC----------LTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLR  356 (441)
Q Consensus       291 ~~~~~~~~~~a~~~~~~m~~~----g~----------~~~~~~~~~li~~~~~~g~~~~~~~li~~~~~~g~~~~a~~~~  356 (441)
                      -|......+-..+++......    +-          .|+...              .++.-+-..|-..|++++|++..
T Consensus       152 Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~l--------------w~~~~lAqhyd~~g~~~~Al~~I  217 (517)
T PF12569_consen  152 LYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLL--------------WTLYFLAQHYDYLGDYEKALEYI  217 (517)
T ss_pred             HHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHH--------------HHHHHHHHHHHHhCCHHHHHHHH
Confidence            676655666666666665432    11          222222              23566778888999999999999


Q ss_pred             HHHHHcCCCCC-HHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHH
Q 036107          357 QKIEEDSCKPD-CETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEKKSLGNAKERIDELLTHA  435 (441)
Q Consensus       357 ~~m~~~g~~p~-~~t~~~li~~~~~~g~~~~a~~~~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~  435 (441)
                      ++.++.  .|+ ...|..-.+.+-+.|++.+|.+..+..+.|   + .-|...-+.....+.++|+.++|++++....+.
T Consensus       218 d~aI~h--tPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~L---D-~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~  291 (517)
T PF12569_consen  218 DKAIEH--TPTLVELYMTKARILKHAGDLKEAAEAMDEAREL---D-LADRYINSKCAKYLLRAGRIEEAEKTASLFTRE  291 (517)
T ss_pred             HHHHhc--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhC---C-hhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCC
Confidence            998876  566 446777777888999999997754444442   2 236667777788889999999999999887765


Q ss_pred             h
Q 036107          436 T  436 (441)
Q Consensus       436 ~  436 (441)
                      .
T Consensus       292 ~  292 (517)
T PF12569_consen  292 D  292 (517)
T ss_pred             C
Confidence            4

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>PRK11189 lipoprotein NlpI; Provisional

Probab=98.57  E-value=0.00017  Score=65.94  Aligned_cols=229  Identities=10%  Similarity=-0.019  Sum_probs=150.7

Q ss_pred             CChhHHHHHHHHHHHhcCCCccHHHHHHHHhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcHHHHHHHHHHHH
Q 036107          144 KKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWC  223 (441)
Q Consensus       144 ~~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~  223 (441)
                      ++.+.++.-+.++....+..+..          ....|..+-..+.+.|+.++|...|++.-...+.+...|+.+-..+.
T Consensus        40 ~~~e~~i~~~~~~l~~~~~~~~~----------~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~  109 (296)
T PRK11189         40 LQQEVILARLNQILASRDLTDEE----------RAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLT  109 (296)
T ss_pred             hHHHHHHHHHHHHHccccCCcHh----------hHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence            45667777777776533221110          24556777778889999999999998886555667888999999999


Q ss_pred             hcCCHHHHHHHHHHHhhCCCCCC-HhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 036107          224 KTRKSDYAQKAMKEMFQHGFSPD-GVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEAL  302 (441)
Q Consensus       224 ~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~  302 (441)
                      ..|++++|...|++..+.  .|+ ..+|..+..++...|++++|.+.|+...+..  |+..........+...+++++|.
T Consensus       110 ~~g~~~~A~~~~~~Al~l--~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~--P~~~~~~~~~~l~~~~~~~~~A~  185 (296)
T PRK11189        110 QAGNFDAAYEAFDSVLEL--DPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDD--PNDPYRALWLYLAESKLDPKQAK  185 (296)
T ss_pred             HCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHccCCHHHHH
Confidence            999999999999999874  454 5678888888899999999999999987753  33221222222344567899999


Q ss_pred             HHHHHHhhCCCCCCHHHHHHHHHHHHhcCccchHHHHHHHHHhcCChhHHHHHHHHHHHcC---C--CC-CHHHHHHHHH
Q 036107          303 KVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDS---C--KP-DCETHARSLK  376 (441)
Q Consensus       303 ~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g---~--~p-~~~t~~~li~  376 (441)
                      ..|.+..... .|+.                  |.. ...+...|+...+ +.+..+.+..   .  .| ....|..+-.
T Consensus       186 ~~l~~~~~~~-~~~~------------------~~~-~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~  244 (296)
T PRK11189        186 ENLKQRYEKL-DKEQ------------------WGW-NIVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAK  244 (296)
T ss_pred             HHHHHHHhhC-Cccc------------------cHH-HHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHH
Confidence            9997755432 2322                  221 1222334555544 3555554221   1  11 2357888888


Q ss_pred             HHHhcCChhhHHHHHHHHHHHHHCCCCCCHHHHHH
Q 036107          377 MCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKM  411 (441)
Q Consensus       377 ~~~~~g~~~~a~~~~~~~~~m~~~~~~p~~~~~~~  411 (441)
                      .+.+.|++++|...   +++..+.+ .||-.-+..
T Consensus       245 ~~~~~g~~~~A~~~---~~~Al~~~-~~~~~e~~~  275 (296)
T PRK11189        245 YYLSLGDLDEAAAL---FKLALANN-VYNFVEHRY  275 (296)
T ss_pred             HHHHCCCHHHHHHH---HHHHHHhC-CchHHHHHH
Confidence            99999999999774   44443322 345554444

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.52  E-value=1.1e-05  Score=72.97  Aligned_cols=232  Identities=13%  Similarity=0.057  Sum_probs=151.1

Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHH-H
Q 036107          177 DTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFI-E  255 (441)
Q Consensus       177 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li-~  255 (441)
                      +......+.+++.-.|+.+.+   ..++..+-.|.......+...+...++-+.+..-+++....+..++-.++..+. .
T Consensus        34 ~~e~~~~~~Rs~iAlg~~~~v---l~ei~~~~~~~l~av~~la~y~~~~~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~  110 (290)
T PF04733_consen   34 KLERDFYQYRSYIALGQYDSV---LSEIKKSSSPELQAVRLLAEYLSSPSDKESALEELKELLADQAGESNEIVQLLAAT  110 (290)
T ss_dssp             HHHHHHHHHHHHHHTT-HHHH---HHHS-TTSSCCCHHHHHHHHHHCTSTTHHCHHHHHHHCCCTS---CHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCChhHH---HHHhccCCChhHHHHHHHHHHHhCccchHHHHHHHHHHHHhccccccHHHHHHHHH
Confidence            345566677888888987754   455544446777666555554444355566666666655444332222333222 3


Q ss_pred             HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCccch
Q 036107          256 HYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLI  335 (441)
Q Consensus       256 ~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~  335 (441)
                      .+...|++++|++++..-      .+.......+..|.+.++++.|.+.++.|.+.+  .|... ..+            
T Consensus       111 i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~--eD~~l-~qL------------  169 (290)
T PF04733_consen  111 ILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQID--EDSIL-TQL------------  169 (290)
T ss_dssp             HHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCS--CCHHH-HHH------------
T ss_pred             HHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CcHHH-HHH------------
Confidence            455679999999998653      366777888999999999999999999999764  34332 222            


Q ss_pred             HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 036107          336 YNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEE  415 (441)
Q Consensus       336 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~~~~m~~~~~~p~~~~~~~ll~~  415 (441)
                      ..+.+..+...+++++|..+|+++.+ ...++..+.+.+..++...|++++|.+   .+.+....+ .-+..+...++-.
T Consensus       170 a~awv~l~~g~e~~~~A~y~f~El~~-~~~~t~~~lng~A~~~l~~~~~~eAe~---~L~~al~~~-~~~~d~LaNliv~  244 (290)
T PF04733_consen  170 AEAWVNLATGGEKYQDAFYIFEELSD-KFGSTPKLLNGLAVCHLQLGHYEEAEE---LLEEALEKD-PNDPDTLANLIVC  244 (290)
T ss_dssp             HHHHHHHHHTTTCCCHHHHHHHHHHC-CS--SHHHHHHHHHHHHHCT-HHHHHH---HHHHHCCC--CCHHHHHHHHHHH
T ss_pred             HHHHHHHHhCchhHHHHHHHHHHHHh-ccCCCHHHHHHHHHHHHHhCCHHHHHH---HHHHHHHhc-cCCHHHHHHHHHH
Confidence            33344444445679999999999865 357888999999999999999999987   455533322 2245566777777


Q ss_pred             HHhcCCc-cHHHHHHHHHHHHhh
Q 036107          416 LEKKSLG-NAKERIDELLTHATE  437 (441)
Q Consensus       416 ~~~~g~~-~~a~~~~~~m~~~~~  437 (441)
                      ....|+. +.+.+.++.++....
T Consensus       245 ~~~~gk~~~~~~~~l~qL~~~~p  267 (290)
T PF04733_consen  245 SLHLGKPTEAAERYLSQLKQSNP  267 (290)
T ss_dssp             HHHTT-TCHHHHHHHHHCHHHTT
T ss_pred             HHHhCCChhHHHHHHHHHHHhCC
Confidence            7778877 668888888876643

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=98.50  E-value=0.00026  Score=59.64  Aligned_cols=170  Identities=9%  Similarity=-0.044  Sum_probs=100.2

Q ss_pred             HHHHHHHHHHcCCChhHHHHHHHHHHHhcCCCccHHHHHHHHhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCc
Q 036107          132 TYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLS  211 (441)
Q Consensus       132 ~y~~li~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~  211 (441)
                      ..--+--+|.+.|+...|..-+++..+.++.              +.-++..+-..|-+.|..+.|.+-|++.-+--+-+
T Consensus        37 arlqLal~YL~~gd~~~A~~nlekAL~~DPs--------------~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~  102 (250)
T COG3063          37 ARLQLALGYLQQGDYAQAKKNLEKALEHDPS--------------YYLAHLVRAHYYQKLGENDLADESYRKALSLAPNN  102 (250)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc--------------cHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCc
Confidence            3444555666777777777777776665532              44566666666667777777777666654433445


Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC-CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 036107          212 SQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSP-DGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMH  290 (441)
Q Consensus       212 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~  290 (441)
                      ..+.|..-..+|..|.+++|.+.|++....-.-| -..||..+.-+..+.|+++.|...|++-.+..-. ...+.-.+..
T Consensus       103 GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~-~~~~~l~~a~  181 (250)
T COG3063         103 GDVLNNYGAFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQ-FPPALLELAR  181 (250)
T ss_pred             cchhhhhhHHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcC-CChHHHHHHH
Confidence            5556666666666677777777776666531111 1245666666666666666666666666554221 2344455555


Q ss_pred             HHHhcCCHHHHHHHHHHHhhCCCCCCH
Q 036107          291 ALEKAKQIYEALKVYEKMKSDDCLTDT  317 (441)
Q Consensus       291 ~~~~~~~~~~a~~~~~~m~~~g~~~~~  317 (441)
                      ...+.|++..|...++.....+. ++.
T Consensus       182 ~~~~~~~y~~Ar~~~~~~~~~~~-~~A  207 (250)
T COG3063         182 LHYKAGDYAPARLYLERYQQRGG-AQA  207 (250)
T ss_pred             HHHhcccchHHHHHHHHHHhccc-ccH
Confidence            56666666666666666655543 444

>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]

Probab=98.50  E-value=0.001  Score=61.88  Aligned_cols=188  Identities=11%  Similarity=0.027  Sum_probs=117.5

Q ss_pred             cCCChHHHHHHHhhhhhHhhhhcCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHhcCCCccHHHHHHHHhhcCHHH
Q 036107          101 RYPSPDKVVEALKCFCFTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRA  180 (441)
Q Consensus       101 ~~~~~g~~~~A~~~~~~~~~~~~~g~~p~~~~y~~li~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~  180 (441)
                      .-...+++..|.++|+....    +-..+...|-.-+..-.++.++..|..+++.....-|.+             |. -
T Consensus        82 wEesq~e~~RARSv~ERALd----vd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRV-------------dq-l  143 (677)
T KOG1915|consen   82 WEESQKEIQRARSVFERALD----VDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRV-------------DQ-L  143 (677)
T ss_pred             HHHhHHHHHHHHHHHHHHHh----cccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchH-------------HH-H
Confidence            34556777788888753322    223456677777777788888888888888876633111             21 2


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhc
Q 036107          181 MSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCRE  260 (441)
Q Consensus       181 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~  260 (441)
                      |--.+.+=-..|++..|.++|++..+ ..|+...|++.|+.=.+-+.++.|..+|+...-.  .|++.+|--...-=-++
T Consensus       144 WyKY~ymEE~LgNi~gaRqiferW~~-w~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~  220 (677)
T KOG1915|consen  144 WYKYIYMEEMLGNIAGARQIFERWME-WEPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKH  220 (677)
T ss_pred             HHHHHHHHHHhcccHHHHHHHHHHHc-CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhc
Confidence            22333344456888888888876532 4688888888888888888888888888887753  47888887777777777


Q ss_pred             CCHHHHHHHHHHHHHc-CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 036107          261 KDFRKVDYTLKEMQEK-GC-KPSVITCTIVMHALEKAKQIYEALKVYEKMK  309 (441)
Q Consensus       261 g~~~~a~~l~~~m~~~-g~-~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~  309 (441)
                      |....|..+|....+. |- ..+...|++...-=.++..++.|.-+|+-..
T Consensus       221 g~~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAl  271 (677)
T KOG1915|consen  221 GNVALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYAL  271 (677)
T ss_pred             CcHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8777777777766543 11 1122233333332233444555555554443

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.48  E-value=5.1e-06  Score=75.13  Aligned_cols=130  Identities=15%  Similarity=0.118  Sum_probs=55.6

Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcHHHHHHHHHHHH----hcCCHHHHHHHHHHHhhCCCCCCHhhHHH
Q 036107          177 DTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWC----KTRKSDYAQKAMKEMFQHGFSPDGVSYTC  252 (441)
Q Consensus       177 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~----~~~~~~~a~~~~~~m~~~g~~p~~~~~~~  252 (441)
                      +.+.....+..+.+.++++.|.+.++.|++- ..|. +...+..++.    ....+.+|..+|+++.+. ..+++.+.+.
T Consensus       130 ~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~-~eD~-~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng  206 (290)
T PF04733_consen  130 SLELLALAVQILLKMNRPDLAEKELKNMQQI-DEDS-ILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNG  206 (290)
T ss_dssp             CHHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-SCCH-HHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHH
T ss_pred             cccHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCcH-HHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHH
Confidence            3344444455555555555555555554321 1121 1222222221    122455555555554432 3344455555


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH-HHHHHHHHHHhh
Q 036107          253 FIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQI-YEALKVYEKMKS  310 (441)
Q Consensus       253 li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~-~~a~~~~~~m~~  310 (441)
                      +..++...|++++|.+++.+..+... -+..|...++.+....|+. +.+.+++.+++.
T Consensus       207 ~A~~~l~~~~~~eAe~~L~~al~~~~-~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~  264 (290)
T PF04733_consen  207 LAVCHLQLGHYEEAEELLEEALEKDP-NDPDTLANLIVCSLHLGKPTEAAERYLSQLKQ  264 (290)
T ss_dssp             HHHHHHHCT-HHHHHHHHHHHCCC-C-CHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHH
T ss_pred             HHHHHHHhCCHHHHHHHHHHHHHhcc-CCHHHHHHHHHHHHHhCCChhHHHHHHHHHHH
Confidence            55555555555555555555433321 1344444455555555554 344455555544

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=98.48  E-value=0.00099  Score=64.31  Aligned_cols=333  Identities=10%  Similarity=0.026  Sum_probs=187.0

Q ss_pred             CCcccccchhhHHHhhhhchhhHHHHHhhhcCchhhHHHHHHHHHhcCCChHHHHHHHhhhhhHhhhhcCCCCCCHHHHH
Q 036107           55 DEDFVIPSLASWVESLKLNEQSRISSHALSEDHETDVDKVSEILRKRYPSPDKVVEALKCFCFTWAKTQTGYMHTPETYN  134 (441)
Q Consensus        55 ~~~~~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~g~~p~~~~y~  134 (441)
                      -..|+...-+.|...+.++-++.|+.+.++.-....  .+.......--..|..++-..+|.    ......+.....|-
T Consensus       515 ~~~tw~~da~~~~k~~~~~carAVya~alqvfp~k~--slWlra~~~ek~hgt~Esl~Allq----kav~~~pkae~lwl  588 (913)
T KOG0495|consen  515 RKSTWLDDAQSCEKRPAIECARAVYAHALQVFPCKK--SLWLRAAMFEKSHGTRESLEALLQ----KAVEQCPKAEILWL  588 (913)
T ss_pred             hHhHHhhhHHHHHhcchHHHHHHHHHHHHhhccchh--HHHHHHHHHHHhcCcHHHHHHHHH----HHHHhCCcchhHHH
Confidence            345667777777777777778888877776432222  233333322222333333333332    11112223445666


Q ss_pred             HHHHHHHcCCChhHHHHHHHHHHHhcCCCccHHHHHHHHhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcHHH
Q 036107          135 AMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQI  214 (441)
Q Consensus       135 ~li~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~  214 (441)
                      ....-+-..|+...|+.++.+.-+..+.              +...|-+-+..-.....++.|..+|.+.+. ..|+..+
T Consensus       589 M~ake~w~agdv~~ar~il~~af~~~pn--------------seeiwlaavKle~en~e~eraR~llakar~-~sgTeRv  653 (913)
T KOG0495|consen  589 MYAKEKWKAGDVPAARVILDQAFEANPN--------------SEEIWLAAVKLEFENDELERARDLLAKARS-ISGTERV  653 (913)
T ss_pred             HHHHHHHhcCCcHHHHHHHHHHHHhCCC--------------cHHHHHHHHHHhhccccHHHHHHHHHHHhc-cCCcchh
Confidence            6666677778888888777776664311              556677777777777788888888777643 3566667


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHh-hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 036107          215 FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGV-SYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALE  293 (441)
Q Consensus       215 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~-~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~  293 (441)
                      |.--++.---.++.++|.+++++..+.  -|+-. .|-.+-..+-+.++.+.|.+.|..=.+. ++-....|-.|...=-
T Consensus       654 ~mKs~~~er~ld~~eeA~rllEe~lk~--fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~~ipLWllLakleE  730 (913)
T KOG0495|consen  654 WMKSANLERYLDNVEEALRLLEEALKS--FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK-CPNSIPLWLLLAKLEE  730 (913)
T ss_pred             hHHHhHHHHHhhhHHHHHHHHHHHHHh--CCchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-CCCCchHHHHHHHHHH
Confidence            766666666667778888877777653  34443 3444444555666666666666543322 2223445555555556


Q ss_pred             hcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCccchHHHHHHHHHhcCChhHHHHHHHHHHHc-----------
Q 036107          294 KAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEED-----------  362 (441)
Q Consensus       294 ~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-----------  362 (441)
                      +.|.+-.|..+++...-++. -+...                |-..|..-.+.|+.+.|..++.+..+.           
T Consensus       731 k~~~~~rAR~ildrarlkNP-k~~~l----------------wle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEa  793 (913)
T KOG0495|consen  731 KDGQLVRARSILDRARLKNP-KNALL----------------WLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEA  793 (913)
T ss_pred             HhcchhhHHHHHHHHHhcCC-Ccchh----------------HHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHH
Confidence            66777777777777666542 23334                444444444455545444444333221           


Q ss_pred             ------------------CCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCcc
Q 036107          363 ------------------SCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQ-ESTHKMLAEELEKKSLGN  423 (441)
Q Consensus       363 ------------------g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~g~~~  423 (441)
                                        ...-|......+-..+-....++.|++   .|.+...  +-|| -.+|..+...+.+.|.-+
T Consensus       794 I~le~~~~rkTks~DALkkce~dphVllaia~lfw~e~k~~kar~---Wf~Ravk--~d~d~GD~wa~fykfel~hG~ee  868 (913)
T KOG0495|consen  794 IWLEPRPQRKTKSIDALKKCEHDPHVLLAIAKLFWSEKKIEKARE---WFERAVK--KDPDNGDAWAWFYKFELRHGTEE  868 (913)
T ss_pred             HHhccCcccchHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHH---HHHHHHc--cCCccchHHHHHHHHHHHhCCHH
Confidence                              112233333333344444444555544   5555332  2333 347777777778888777


Q ss_pred             HHHHHHHHHH
Q 036107          424 AKERIDELLT  433 (441)
Q Consensus       424 ~a~~~~~~m~  433 (441)
                      +-.++++.-.
T Consensus       869 d~kev~~~c~  878 (913)
T KOG0495|consen  869 DQKEVLKKCE  878 (913)
T ss_pred             HHHHHHHHHh
Confidence            7777776654

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=98.47  E-value=0.00057  Score=65.89  Aligned_cols=300  Identities=11%  Similarity=0.034  Sum_probs=214.4

Q ss_pred             hhhchhhHHHHHhhhcCchhhHHHHHHHHHhcCCChHHHHHHHhhhhhHhhhhcCCCCCCHHHHHHHHHHHHcCCChhHH
Q 036107           70 LKLNEQSRISSHALSEDHETDVDKVSEILRKRYPSPDKVVEALKCFCFTWAKTQTGYMHTPETYNAMVEALGKSKKFGLM  149 (441)
Q Consensus        70 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~g~~p~~~~y~~li~~~~~~~~~~~a  149 (441)
                      |..++...++...+.+-...  +.+.-+..+-+-..|++..|+..++.....    ...+...|-.-+.....+.+++.|
T Consensus       564 gt~Esl~Allqkav~~~pka--e~lwlM~ake~w~agdv~~ar~il~~af~~----~pnseeiwlaavKle~en~e~era  637 (913)
T KOG0495|consen  564 GTRESLEALLQKAVEQCPKA--EILWLMYAKEKWKAGDVPAARVILDQAFEA----NPNSEEIWLAAVKLEFENDELERA  637 (913)
T ss_pred             CcHHHHHHHHHHHHHhCCcc--hhHHHHHHHHHHhcCCcHHHHHHHHHHHHh----CCCcHHHHHHHHHHhhccccHHHH
Confidence            44555555665555554333  345555666777789999999888644432    122567999999999999999999


Q ss_pred             HHHHHHHHHhcCCCccHHHHHHHHhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcHHHHHHHHHHHHhcCCHH
Q 036107          150 WELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSD  229 (441)
Q Consensus       150 ~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~  229 (441)
                      ..+|.+....+               ++..+|.--++.---.++.++|.++.++.-+.++-=...|-.+-..+-+.++++
T Consensus       638 R~llakar~~s---------------gTeRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie  702 (913)
T KOG0495|consen  638 RDLLAKARSIS---------------GTERVWMKSANLERYLDNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIE  702 (913)
T ss_pred             HHHHHHHhccC---------------CcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHH
Confidence            99999988744               255666666666667799999999998775544444556777778888889999


Q ss_pred             HHHHHHHHHhhCCCCCC-HhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 036107          230 YAQKAMKEMFQHGFSPD-GVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKM  308 (441)
Q Consensus       230 ~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m  308 (441)
                      .|.+.|..=.+.  .|+ +..|-.+-.-=-+.|.+-+|..+++.-+-.+.+ |...|-..|+.=.+.|+.+.|..+..+.
T Consensus       703 ~aR~aY~~G~k~--cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk-~~~lwle~Ir~ElR~gn~~~a~~lmakA  779 (913)
T KOG0495|consen  703 MAREAYLQGTKK--CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPK-NALLWLESIRMELRAGNKEQAELLMAKA  779 (913)
T ss_pred             HHHHHHHhcccc--CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCC-cchhHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            999988776543  344 456666666667788999999999998877654 7889999999999999999999888776


Q ss_pred             hhCCCCCCHHHHHHH-------------HHHHHhcCcc-chHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCH-HHHHH
Q 036107          309 KSDDCLTDTSFYSSL-------------IFILSKAVRF-LIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDC-ETHAR  373 (441)
Q Consensus       309 ~~~g~~~~~~~~~~l-------------i~~~~~~g~~-~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~-~t~~~  373 (441)
                      .+. ++.+...|..-             ++++-|+..- ...-++-..+-...++++|.+.|.+....  .||. .+|.-
T Consensus       780 LQe-cp~sg~LWaEaI~le~~~~rkTks~DALkkce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~--d~d~GD~wa~  856 (913)
T KOG0495|consen  780 LQE-CPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKK--DPDNGDAWAW  856 (913)
T ss_pred             HHh-CCccchhHHHHHHhccCcccchHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHcc--CCccchHHHH
Confidence            553 22233344333             4555554333 44555666677778899999999988754  4544 46777


Q ss_pred             HHHHHHhcCChhhHHHHHHHHHH
Q 036107          374 SLKMCCHKKRMKDGMLVLNLMRE  396 (441)
Q Consensus       374 li~~~~~~g~~~~a~~~~~~~~~  396 (441)
                      +...+.+.|.-++-.+++..+..
T Consensus       857 fykfel~hG~eed~kev~~~c~~  879 (913)
T KOG0495|consen  857 FYKFELRHGTEEDQKEVLKKCET  879 (913)
T ss_pred             HHHHHHHhCCHHHHHHHHHHHhc
Confidence            77888899987777776665544

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.45  E-value=0.00081  Score=62.69  Aligned_cols=221  Identities=12%  Similarity=0.061  Sum_probs=143.1

Q ss_pred             cCCHHHHHHHHHHhhhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHH
Q 036107          191 RNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTL  270 (441)
Q Consensus       191 ~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~l~  270 (441)
                      .|+.-.|.+-|+..-...+.+...|=-+-..|....+.++..+.|++....+- -|..+|..--....-.+++++|..=|
T Consensus       339 ~g~~~~a~~d~~~~I~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp-~n~dvYyHRgQm~flL~q~e~A~aDF  417 (606)
T KOG0547|consen  339 KGDSLGAQEDFDAAIKLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDP-ENPDVYYHRGQMRFLLQQYEEAIADF  417 (606)
T ss_pred             cCCchhhhhhHHHHHhcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCC-CCCchhHhHHHHHHHHHHHHHHHHHH
Confidence            46666666666665332222222255555667778888888888887776432 24556666666666667788888888


Q ss_pred             HHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCccchHHHHHHHHHhcCChh
Q 036107          271 KEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEG  350 (441)
Q Consensus       271 ~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~~~li~~~~~~g~~~  350 (441)
                      ++.++.... ++..|.-+--+..+.+++++++..|++.+++  .|+..               ..||..-..+...++++
T Consensus       418 ~Kai~L~pe-~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk--FP~~~---------------Evy~~fAeiLtDqqqFd  479 (606)
T KOG0547|consen  418 QKAISLDPE-NAYAYIQLCCALYRQHKIAESMKTFEEAKKK--FPNCP---------------EVYNLFAEILTDQQQFD  479 (606)
T ss_pred             HHHhhcChh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CCCCc---------------hHHHHHHHHHhhHHhHH
Confidence            887665322 5666777777777888899999999888875  23222               34888888888889999


Q ss_pred             HHHHHHHHHHHc-----CCCCCHHHH--HHHHHHHHhcCChhhHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCc
Q 036107          351 NALKLRQKIEED-----SCKPDCETH--ARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQ-ESTHKMLAEELEKKSLG  422 (441)
Q Consensus       351 ~a~~~~~~m~~~-----g~~p~~~t~--~~li~~~~~~g~~~~a~~~~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~g~~  422 (441)
                      +|++.|+..++.     ++..+..++  -.++- +.=.+++..|.+   ++++..+  +-|- ...|..|-..-.+.|+.
T Consensus       480 ~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~-~qwk~d~~~a~~---Ll~KA~e--~Dpkce~A~~tlaq~~lQ~~~i  553 (606)
T KOG0547|consen  480 KAVKQYDKAIELEPREHLIIVNAAPLVHKALLV-LQWKEDINQAEN---LLRKAIE--LDPKCEQAYETLAQFELQRGKI  553 (606)
T ss_pred             HHHHHHHHHHhhccccccccccchhhhhhhHhh-hchhhhHHHHHH---HHHHHHc--cCchHHHHHHHHHHHHHHHhhH
Confidence            999999987643     222222222  11111 112266777755   6666433  3332 23788899999999999


Q ss_pred             cHHHHHHHHHHHHh
Q 036107          423 NAKERIDELLTHAT  436 (441)
Q Consensus       423 ~~a~~~~~~m~~~~  436 (441)
                      ++|.++|+.--...
T Consensus       554 ~eAielFEksa~lA  567 (606)
T KOG0547|consen  554 DEAIELFEKSAQLA  567 (606)
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999998755443

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=98.44  E-value=0.00046  Score=58.13  Aligned_cols=188  Identities=11%  Similarity=-0.001  Sum_probs=119.8

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHhhhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCC
Q 036107          183 VLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKD  262 (441)
Q Consensus       183 ~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~  262 (441)
                      -|--.|.+.|+...|..-+++.-+.-+-+..+|..+-..|-+.|..+.|.+-|++..+.. +-+..+.|..-.-+|..|+
T Consensus        40 qLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FLC~qg~  118 (250)
T COG3063          40 QLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFLCAQGR  118 (250)
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHHHhCCC
Confidence            344567777777777777777644445566667777777777777777777777776532 1234556666666677777


Q ss_pred             HHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCccchHHHHHH
Q 036107          263 FRKVDYTLKEMQEKG-CKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMIS  341 (441)
Q Consensus       263 ~~~a~~l~~~m~~~g-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~~~li~  341 (441)
                      +++|...|++....- ..--..||..+.-+..+.|+++.|+..|++-.+..-..+.                 +.-.+..
T Consensus       119 ~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~-----------------~~l~~a~  181 (250)
T COG3063         119 PEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPP-----------------ALLELAR  181 (250)
T ss_pred             hHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCCh-----------------HHHHHHH
Confidence            777777777766541 1112456677776777777777777777777664322111                 2455556


Q ss_pred             HHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHH
Q 036107          342 SACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGML  389 (441)
Q Consensus       342 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~  389 (441)
                      ...+.|++-.|...++.....+. ++..+....|+---..|+.+.+.+
T Consensus       182 ~~~~~~~y~~Ar~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~  228 (250)
T COG3063         182 LHYKAGDYAPARLYLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQR  228 (250)
T ss_pred             HHHhcccchHHHHHHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHH
Confidence            66666777777777776665554 666666666666666677666655

>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif)

Probab=98.43  E-value=4.2e-07  Score=53.51  Aligned_cols=34  Identities=32%  Similarity=0.541  Sum_probs=31.4

Q ss_pred             hHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCH
Q 036107          335 IYNTMISSACVRSEEGNALKLRQKIEEDSCKPDC  368 (441)
Q Consensus       335 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~  368 (441)
                      +||++|.+|++.|++++|.++|++|.+.|+.||.
T Consensus         2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~   35 (35)
T TIGR00756         2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV   35 (35)
T ss_pred             cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence            6999999999999999999999999999999983

This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.39  E-value=0.00047  Score=65.31  Aligned_cols=268  Identities=13%  Similarity=0.073  Sum_probs=179.8

Q ss_pred             CCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHhcCCCccHHHHHHHHhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 036107          125 GYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKF  204 (441)
Q Consensus       125 g~~p~~~~y~~li~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~  204 (441)
                      +.+.++...-.--.-+-..+++.+..++++...+..+-              ....+..=|..+...|+..+...+=..+
T Consensus       239 ~l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpf--------------h~~~~~~~ia~l~el~~~n~Lf~lsh~L  304 (611)
T KOG1173|consen  239 GLAENLDLLAEKADRLYYGCRFKECLKITEELLEKDPF--------------HLPCLPLHIACLYELGKSNKLFLLSHKL  304 (611)
T ss_pred             hhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCC--------------CcchHHHHHHHHHHhcccchHHHHHHHH
Confidence            34445555666666677788999999999998886522              4556666677888888888887777778


Q ss_pred             hhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC-HhhHHHHHHHHHhcCCHHHHHHHHHHHHHc--C-CCC
Q 036107          205 KDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPD-GVSYTCFIEHYCREKDFRKVDYTLKEMQEK--G-CKP  280 (441)
Q Consensus       205 ~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~a~~l~~~m~~~--g-~~p  280 (441)
                      -+..+-...+|-++-.-|.-.|+..+|.+.|.+-..  +.|. ...|-..-..|+-.|+.|+|...+...-+.  | ..|
T Consensus       305 V~~yP~~a~sW~aVg~YYl~i~k~seARry~SKat~--lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP  382 (611)
T KOG1173|consen  305 VDLYPSKALSWFAVGCYYLMIGKYSEARRYFSKATT--LDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLP  382 (611)
T ss_pred             HHhCCCCCcchhhHHHHHHHhcCcHHHHHHHHHHhh--cCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcch
Confidence            777777888888888888888999999999987654  3333 356777777788888888887777665432  2 122


Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHH-------------HHHHhcC----c-------c-ch
Q 036107          281 SVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLI-------------FILSKAV----R-------F-LI  335 (441)
Q Consensus       281 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li-------------~~~~~~g----~-------~-~~  335 (441)
                      ..  |..  --|.+.+++..|.++|.+..... +.|..+.+-+-             .-+.+.-    .       + .+
T Consensus       383 ~L--Ylg--mey~~t~n~kLAe~Ff~~A~ai~-P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~  457 (611)
T KOG1173|consen  383 SL--YLG--MEYMRTNNLKLAEKFFKQALAIA-PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPT  457 (611)
T ss_pred             HH--HHH--HHHHHhccHHHHHHHHHHHHhcC-CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHH
Confidence            21  211  12455556666666665544321 11111111110             0000000    0       0 45


Q ss_pred             HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 036107          336 YNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEE  415 (441)
Q Consensus       336 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~~~~m~~~~~~p~~~~~~~ll~~  415 (441)
                      ++.|-..|.+.+..++|+..+++-.... .-|..|+.++--.|...|+++.|.+   .+.+  ...+.|+-.+...++..
T Consensus       458 ~~NLGH~~Rkl~~~~eAI~~~q~aL~l~-~k~~~~~asig~iy~llgnld~Aid---~fhK--aL~l~p~n~~~~~lL~~  531 (611)
T KOG1173|consen  458 LNNLGHAYRKLNKYEEAIDYYQKALLLS-PKDASTHASIGYIYHLLGNLDKAID---HFHK--ALALKPDNIFISELLKL  531 (611)
T ss_pred             HHhHHHHHHHHhhHHHHHHHHHHHHHcC-CCchhHHHHHHHHHHHhcChHHHHH---HHHH--HHhcCCccHHHHHHHHH
Confidence            8888899999999999999999877543 5577788888888889999999965   6666  45788998888877776


Q ss_pred             HHhc
Q 036107          416 LEKK  419 (441)
Q Consensus       416 ~~~~  419 (441)
                      +...
T Consensus       532 aie~  535 (611)
T KOG1173|consen  532 AIED  535 (611)
T ss_pred             HHHh
Confidence            6543

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=98.38  E-value=0.0024  Score=61.70  Aligned_cols=380  Identities=12%  Similarity=0.013  Sum_probs=211.1

Q ss_pred             hcccchhcccccCccchhccCCCCCCCCcccccchhhHHHhhhhchhhHHHHHhhhcCchhhHHHHHHHHHhcCCChHHH
Q 036107           29 LCNRHCITNELTGLPSWLKFFDTQSPDEDFVIPSLASWVESLKLNEQSRISSHALSEDHETDVDKVSEILRKRYPSPDKV  108 (441)
Q Consensus        29 l~~~~~~~~~a~~l~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~  108 (441)
                      ||..|+.. +|.+..+.-.+....  ...+|..+--.....++.++|...+..+.+.+  +|...+..=+.-.-++-++.
T Consensus        51 L~~lg~~~-ea~~~vr~glr~d~~--S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~--~dN~qilrDlslLQ~QmRd~  125 (700)
T KOG1156|consen   51 LNCLGKKE-EAYELVRLGLRNDLK--SHVCWHVLGLLQRSDKKYDEAIKCYRNALKIE--KDNLQILRDLSLLQIQMRDY  125 (700)
T ss_pred             hhcccchH-HHHHHHHHHhccCcc--cchhHHHHHHHHhhhhhHHHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHHHhh
Confidence            67777776 666666522222211  33455544333334466777777777766654  33333333332222333333


Q ss_pred             HHHHhhhhhHhhhhcCCCCC-CHHHHHHHHHHHHcCCChhHHHHHHHHHHHhcCCCccHHHHHHHHhhcCHHHHHHHHHH
Q 036107          109 VEALKCFCFTWAKTQTGYMH-TPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDT  187 (441)
Q Consensus       109 ~~A~~~~~~~~~~~~~g~~p-~~~~y~~li~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~  187 (441)
                      .-....-...+.     ..| ....|-...-+..-.|+...|.+++++..+..+..++...+...      ...---...
T Consensus       126 ~~~~~tr~~LLq-----l~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~s------e~~Ly~n~i  194 (700)
T KOG1156|consen  126 EGYLETRNQLLQ-----LRPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHS------ELLLYQNQI  194 (700)
T ss_pred             hhHHHHHHHHHH-----hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHH------HHHHHHHHH
Confidence            332222111111     112 35688888888899999999999999998865323322222111      111112233


Q ss_pred             HHhcCCHHHHHHHHHHhhhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHH-hcCCHHHH
Q 036107          188 LVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYC-REKDFRKV  266 (441)
Q Consensus       188 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~-~~g~~~~a  266 (441)
                      ..+.|..+.|++.....+..+.-....--+--..+.+.+++++|..++..+...  .||-.-|.-.+..+. +-.+--++
T Consensus       195 ~~E~g~~q~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~r--nPdn~~Yy~~l~~~lgk~~d~~~~  272 (700)
T KOG1156|consen  195 LIEAGSLQKALEHLLDNEKQIVDKLAFEETKADLLMKLGQLEEAVKVYRRLLER--NPDNLDYYEGLEKALGKIKDMLEA  272 (700)
T ss_pred             HHHcccHHHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhh--CchhHHHHHHHHHHHHHHhhhHHH
Confidence            456788888888877665433333333344456678889999999999999886  377776665555444 33333333


Q ss_pred             -HHHHHHHHHcC---CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHH-------------HHHHHHh
Q 036107          267 -DYTLKEMQEKG---CKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSS-------------LIFILSK  329 (441)
Q Consensus       267 -~~l~~~m~~~g---~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~-------------li~~~~~  329 (441)
                       ..+|....+.-   -.|--...+.+ +   ...-.+....++..+.+.|+++--....+             ++..|..
T Consensus       273 lk~ly~~ls~~y~r~e~p~Rlplsvl-~---~eel~~~vdkyL~~~l~Kg~p~vf~dl~SLyk~p~k~~~le~Lvt~y~~  348 (700)
T KOG1156|consen  273 LKALYAILSEKYPRHECPRRLPLSVL-N---GEELKEIVDKYLRPLLSKGVPSVFKDLRSLYKDPEKVAFLEKLVTSYQH  348 (700)
T ss_pred             HHHHHHHHhhcCcccccchhccHHHh-C---cchhHHHHHHHHHHHhhcCCCchhhhhHHHHhchhHhHHHHHHHHHHHh
Confidence             36666665431   11111111111 1   11222333444455555555432221111             1122211


Q ss_pred             c----Ccc---------------chHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHhcCChhhHHH
Q 036107          330 A----VRF---------------LIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCE-THARSLKMCCHKKRMKDGML  389 (441)
Q Consensus       330 ~----g~~---------------~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~-t~~~li~~~~~~g~~~~a~~  389 (441)
                      .    |..               .++-.++..|-+.|+++.|+..++....+  .|+.+ -|..=.+.+...|++++|..
T Consensus       349 ~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdH--TPTliEly~~KaRI~kH~G~l~eAa~  426 (700)
T KOG1156|consen  349 SLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDH--TPTLIELYLVKARIFKHAGLLDEAAA  426 (700)
T ss_pred             hcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhcc--CchHHHHHHHHHHHHHhcCChHHHHH
Confidence            1    111               55666788889999999999999988754  66654 34444467778899999876


Q ss_pred             HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHh
Q 036107          390 VLNLMREMLSKGIVPQESTHKMLAEELEKKSLGNAKERIDELLTHAT  436 (441)
Q Consensus       390 ~~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~  436 (441)
                      .++..++|   + .||...-..-..-..++++.++|.++....++..
T Consensus       427 ~l~ea~el---D-~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~  469 (700)
T KOG1156|consen  427 WLDEAQEL---D-TADRAINSKCAKYMLRANEIEEAEEVLSKFTREG  469 (700)
T ss_pred             HHHHHHhc---c-chhHHHHHHHHHHHHHccccHHHHHHHHHhhhcc
Confidence            44433332   2 3555544455666778899999998888776644

>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif)

Probab=98.38  E-value=6.9e-07  Score=52.53  Aligned_cols=33  Identities=27%  Similarity=0.564  Sum_probs=16.3

Q ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 036107          249 SYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPS  281 (441)
Q Consensus       249 ~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~  281 (441)
                      +||++|.+|++.|++++|.++|++|.+.|++||
T Consensus         2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~   34 (35)
T TIGR00756         2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD   34 (35)
T ss_pred             cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence            444455555555555555555555544444444

This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.36  E-value=5.8e-05  Score=70.01  Aligned_cols=195  Identities=15%  Similarity=0.098  Sum_probs=148.5

Q ss_pred             HHHHHHHHHcCCChhHHHHHHHHHHHhcCCCccHHHHHHHHhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcH
Q 036107          133 YNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSS  212 (441)
Q Consensus       133 y~~li~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~  212 (441)
                      |-.+-..|.+..+.++.+..|++....++.              ++.+|..--..+.-.+++++|..=|++..+--+-+.
T Consensus       363 yI~~a~~y~d~~~~~~~~~~F~~A~~ldp~--------------n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe~~  428 (606)
T KOG0547|consen  363 YIKRAAAYADENQSEKMWKDFNKAEDLDPE--------------NPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPENA  428 (606)
T ss_pred             HHHHHHHHhhhhccHHHHHHHHHHHhcCCC--------------CCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChhhh
Confidence            777778899999999999999999887644              445666656666667889999998888765445566


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHc-----CCCCCHHHH--
Q 036107          213 QIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEK-----GCKPSVITC--  285 (441)
Q Consensus       213 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~-----g~~p~~~~~--  285 (441)
                      ..|--+-.+.-+.+++++++..|++..++ ++.-+..|+..-..+...+++++|.+.|+...+.     ++..+..++  
T Consensus       429 ~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~  507 (606)
T KOG0547|consen  429 YAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVH  507 (606)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhh
Confidence            66666777777889999999999999875 6556789999999999999999999999987653     232233222  


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCccchHHHHHHHHHhcCChhHHHHHHHHHH
Q 036107          286 TIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIE  360 (441)
Q Consensus       286 ~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~~~li~~~~~~g~~~~a~~~~~~m~  360 (441)
                      -+++..- -.+++..|.+++....+.+-+.+.                 .|-+|-..-.+.|++++|+++|++-.
T Consensus       508 Ka~l~~q-wk~d~~~a~~Ll~KA~e~Dpkce~-----------------A~~tlaq~~lQ~~~i~eAielFEksa  564 (606)
T KOG0547|consen  508 KALLVLQ-WKEDINQAENLLRKAIELDPKCEQ-----------------AYETLAQFELQRGKIDEAIELFEKSA  564 (606)
T ss_pred             hhHhhhc-hhhhHHHHHHHHHHHHccCchHHH-----------------HHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            2333222 238999999999998886543332                 38888888899999999999998864

>PF13812 PPR_3: Pentatricopeptide repeat domain

Probab=98.32  E-value=1e-06  Score=51.45  Aligned_cols=29  Identities=21%  Similarity=0.366  Sum_probs=11.0

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 036107          250 YTCFIEHYCREKDFRKVDYTLKEMQEKGC  278 (441)
Q Consensus       250 ~~~li~~~~~~g~~~~a~~l~~~m~~~g~  278 (441)
                      |+++|.+|++.|+++.|.++|++|++.|+
T Consensus         4 y~~ll~a~~~~g~~~~a~~~~~~M~~~gv   32 (34)
T PF13812_consen    4 YNALLRACAKAGDPDAALQLFDEMKEQGV   32 (34)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence            33333333333333333333333333333

>PF13812 PPR_3: Pentatricopeptide repeat domain

Probab=98.32  E-value=8.8e-07  Score=51.73  Aligned_cols=33  Identities=24%  Similarity=0.473  Sum_probs=30.5

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC
Q 036107          213 QIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSP  245 (441)
Q Consensus       213 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p  245 (441)
                      .+|+.+|.+|++.|+++.|.++|++|.+.|++|
T Consensus         2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P   34 (34)
T PF13812_consen    2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP   34 (34)
T ss_pred             cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence            579999999999999999999999999999887

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=98.27  E-value=0.00018  Score=63.57  Aligned_cols=170  Identities=10%  Similarity=-0.012  Sum_probs=118.0

Q ss_pred             CHHHHHHHHHHHHcCCChhHHHHHHHHHHHhcCCCccHHHHHHHHhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCC
Q 036107          129 TPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCI  208 (441)
Q Consensus       129 ~~~~y~~li~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~  208 (441)
                      ....+-.+...+.+.|+++.|...|+++....+..+.           ...++..+..++.+.|++++|...++.+.+..
T Consensus        32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~-----------~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~  100 (235)
T TIGR03302        32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPY-----------AEQAQLDLAYAYYKSGDYAEAIAAADRFIRLH  100 (235)
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchh-----------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC
Confidence            4566777777888889999999999888774422110           22456667778888899999999998874322


Q ss_pred             CCcH---HHHHHHHHHHHhc--------CCHHHHHHHHHHHhhCCCCCCHh-hH-----------------HHHHHHHHh
Q 036107          209 SLSS---QIFDVLIHGWCKT--------RKSDYAQKAMKEMFQHGFSPDGV-SY-----------------TCFIEHYCR  259 (441)
Q Consensus       209 ~~~~---~~~~~li~~~~~~--------~~~~~a~~~~~~m~~~g~~p~~~-~~-----------------~~li~~~~~  259 (441)
                      +.+.   .++..+-.++.+.        |+.++|.+.|+......  |+.. .+                 -.+-..+.+
T Consensus       101 p~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~  178 (235)
T TIGR03302       101 PNHPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRY--PNSEYAPDAKKRMDYLRNRLAGKELYVARFYLK  178 (235)
T ss_pred             cCCCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHC--CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            2122   1344444444443        67888888888887642  3321 11                 133456778


Q ss_pred             cCCHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 036107          260 EKDFRKVDYTLKEMQEKG--CKPSVITCTIVMHALEKAKQIYEALKVYEKMKSD  311 (441)
Q Consensus       260 ~g~~~~a~~l~~~m~~~g--~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~  311 (441)
                      .|++++|...+++..+..  -+.....+..+..++.+.|++++|..+++.+...
T Consensus       179 ~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~  232 (235)
T TIGR03302       179 RGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN  232 (235)
T ss_pred             cCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            899999999999987753  2234678889999999999999999999888764

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.24  E-value=0.001  Score=67.17  Aligned_cols=162  Identities=15%  Similarity=0.133  Sum_probs=89.4

Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHH
Q 036107          177 DTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEH  256 (441)
Q Consensus       177 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~  256 (441)
                      .+.+|+.+-.+-.+.|.+.+|.+-|-+..     |...|.-+|+...+.|.+++-.+.+.-.++..-+|.+.  +.||-+
T Consensus      1103 ~p~vWsqlakAQL~~~~v~dAieSyikad-----Dps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~A 1175 (1666)
T KOG0985|consen 1103 EPAVWSQLAKAQLQGGLVKDAIESYIKAD-----DPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFA 1175 (1666)
T ss_pred             ChHHHHHHHHHHHhcCchHHHHHHHHhcC-----CcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHH
Confidence            45666666666666666666666554432     33346666666666666666666665555544444433  356666


Q ss_pred             HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCccchH
Q 036107          257 YCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIY  336 (441)
Q Consensus       257 ~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~  336 (441)
                      |++.++..+.++++.       -||......+-+-|...+.++.|.-+|.....                         |
T Consensus      1176 yAkt~rl~elE~fi~-------gpN~A~i~~vGdrcf~~~~y~aAkl~y~~vSN-------------------------~ 1223 (1666)
T KOG0985|consen 1176 YAKTNRLTELEEFIA-------GPNVANIQQVGDRCFEEKMYEAAKLLYSNVSN-------------------------F 1223 (1666)
T ss_pred             HHHhchHHHHHHHhc-------CCCchhHHHHhHHHhhhhhhHHHHHHHHHhhh-------------------------H
Confidence            666666555444432       25555555666666666666666655554322                         5


Q ss_pred             HHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 036107          337 NTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKR  383 (441)
Q Consensus       337 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~  383 (441)
                      ..+...++..|+++.|.+--++.      -+..||-.+-.+|...+.
T Consensus      1224 a~La~TLV~LgeyQ~AVD~aRKA------ns~ktWK~VcfaCvd~~E 1264 (1666)
T KOG0985|consen 1224 AKLASTLVYLGEYQGAVDAARKA------NSTKTWKEVCFACVDKEE 1264 (1666)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhc------cchhHHHHHHHHHhchhh
Confidence            55555555555555554433322      233455555555554443

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.23  E-value=0.00063  Score=59.42  Aligned_cols=291  Identities=10%  Similarity=0.035  Sum_probs=176.0

Q ss_pred             ChHHHHHHHhhhhhHhhhhcCCCCC-CHHHHHHHHHHHHcCCChhHHHHHHHHHHHhcCCCccHHHHHHHHhhcCHHHHH
Q 036107          104 SPDKVVEALKCFCFTWAKTQTGYMH-TPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMS  182 (441)
Q Consensus       104 ~~g~~~~A~~~~~~~~~~~~~g~~p-~~~~y~~li~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~  182 (441)
                      +..++.+|++++....+     -.| +....+.+-.+|-...++..|-+.++++....   |            ...-|.
T Consensus        22 ~d~ry~DaI~~l~s~~E-----r~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~---P------------~~~qYr   81 (459)
T KOG4340|consen   22 RDARYADAIQLLGSELE-----RSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLH---P------------ELEQYR   81 (459)
T ss_pred             HHhhHHHHHHHHHHHHh-----cCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC---h------------HHHHHH
Confidence            45567777777642222     123 56677888888888899999999999987743   2            112222


Q ss_pred             H-HHHHHHhcCCHHHHHHHHHHhhhCCCCcHHHHHHHHHHH--HhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHh
Q 036107          183 V-LMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGW--CKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCR  259 (441)
Q Consensus       183 ~-li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~--~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~  259 (441)
                      . -..++-+.+.+..|+++...|.+.  ++...-..-+.+.  -..+++..+..+.++....|   +..+.+..-....+
T Consensus        82 lY~AQSLY~A~i~ADALrV~~~~~D~--~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllyk  156 (459)
T KOG4340|consen   82 LYQAQSLYKACIYADALRVAFLLLDN--PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYK  156 (459)
T ss_pred             HHHHHHHHHhcccHHHHHHHHHhcCC--HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeec
Confidence            1 124556778899999999888542  3322222223332  34678888999998886533   33344444344568


Q ss_pred             cCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC-------------CCHHH----HH
Q 036107          260 EKDFRKVDYTLKEMQEK-GCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCL-------------TDTSF----YS  321 (441)
Q Consensus       260 ~g~~~~a~~l~~~m~~~-g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~-------------~~~~~----~~  321 (441)
                      .|++++|.+-|+...+- |.. ....|+..+..| +.|+++.|.+...+++++|++             ||...    ..
T Consensus       157 egqyEaAvqkFqaAlqvsGyq-pllAYniALaHy-~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~  234 (459)
T KOG4340|consen  157 EGQYEAAVQKFQAALQVSGYQ-PLLAYNLALAHY-SSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLV  234 (459)
T ss_pred             cccHHHHHHHHHHHHhhcCCC-chhHHHHHHHHH-hhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHH
Confidence            89999999999988765 555 457788777655 558999999999999888763             22111    11


Q ss_pred             HHHHHHHhcCccchHHHHHHHHHhcCChhHHHHHHHHHH-HcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHC
Q 036107          322 SLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIE-EDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSK  400 (441)
Q Consensus       322 ~li~~~~~~g~~~~~~~li~~~~~~g~~~~a~~~~~~m~-~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~~~~m~~~  400 (441)
                      .-++++.     ..+|.-..-+.+.|+.+.|.+-+-.|- ...-..|++|...+.-.-. .+++.++.+-+..+-+   .
T Consensus       235 lh~Sal~-----eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n~-~~~p~~g~~KLqFLL~---~  305 (459)
T KOG4340|consen  235 LHQSALV-----EAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMNM-DARPTEGFEKLQFLLQ---Q  305 (459)
T ss_pred             HHHHHHH-----HHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhcc-cCCccccHHHHHHHHh---c
Confidence            1111111     226655666677888888888887774 2223455566554433222 1333333221222222   1


Q ss_pred             CCCCCHHHHHHHHHHHHhcCCccHHHHHHHH
Q 036107          401 GIVPQESTHKMLAEELEKKSLGNAKERIDEL  431 (441)
Q Consensus       401 ~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~  431 (441)
                      . +....||..++-.||+..-++.|-+++-+
T Consensus       306 n-PfP~ETFANlLllyCKNeyf~lAADvLAE  335 (459)
T KOG4340|consen  306 N-PFPPETFANLLLLYCKNEYFDLAADVLAE  335 (459)
T ss_pred             C-CCChHHHHHHHHHHhhhHHHhHHHHHHhh
Confidence            1 13455777777777777777777666543

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.20  E-value=0.0003  Score=66.75  Aligned_cols=255  Identities=9%  Similarity=0.013  Sum_probs=184.3

Q ss_pred             HHcCCChhHHHHHHHHHHHhcCCCccHHHHHHHHhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcHHHHHHHH
Q 036107          140 LGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLI  219 (441)
Q Consensus       140 ~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li  219 (441)
                      +.+.|++.+|.-+|+...+..|.              +.+.|-.|-..-...++-..|+.-+.+.-+--+-|....-+|-
T Consensus       295 lm~nG~L~~A~LafEAAVkqdP~--------------haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLA  360 (579)
T KOG1125|consen  295 LMKNGDLSEAALAFEAAVKQDPQ--------------HAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALA  360 (579)
T ss_pred             HHhcCCchHHHHHHHHHHhhChH--------------HHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHH
Confidence            35677888888888887775432              6788888888888888888888888777554466777888888


Q ss_pred             HHHHhcCCHHHHHHHHHHHhhCCCC--------CCHhhHHHHHHHHHhcCCHHHHHHHHHHHH-HcCCCCCHHHHHHHHH
Q 036107          220 HGWCKTRKSDYAQKAMKEMFQHGFS--------PDGVSYTCFIEHYCREKDFRKVDYTLKEMQ-EKGCKPSVITCTIVMH  290 (441)
Q Consensus       220 ~~~~~~~~~~~a~~~~~~m~~~g~~--------p~~~~~~~li~~~~~~g~~~~a~~l~~~m~-~~g~~p~~~~~~~ll~  290 (441)
                      -.|...|.-..|++.++.-.....+        ++...-+.  +.......+....++|-++. +.+.++|...+..|--
T Consensus       361 VSytNeg~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGV  438 (579)
T KOG1125|consen  361 VSYTNEGLQNQALKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGV  438 (579)
T ss_pred             HHHhhhhhHHHHHHHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHH
Confidence            8999999999999999888653210        01100000  22233334566777777764 4565677777888877


Q ss_pred             HHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCccchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHH-
Q 036107          291 ALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCE-  369 (441)
Q Consensus       291 ~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~-  369 (441)
                      .|.-.|++++|.+.|+.....  +|+..+               .||.|-..++...+.++|+.-|++.++.  +|+.+ 
T Consensus       439 Ly~ls~efdraiDcf~~AL~v--~Pnd~~---------------lWNRLGAtLAN~~~s~EAIsAY~rALqL--qP~yVR  499 (579)
T KOG1125|consen  439 LYNLSGEFDRAVDCFEAALQV--KPNDYL---------------LWNRLGATLANGNRSEEAISAYNRALQL--QPGYVR  499 (579)
T ss_pred             HHhcchHHHHHHHHHHHHHhc--CCchHH---------------HHHHhhHHhcCCcccHHHHHHHHHHHhc--CCCeee
Confidence            888999999999999999885  666653               4999999999999999999999998864  67654 


Q ss_pred             -HHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCC------CCHHHHHHHHHHHHhcCCccHHHHHHH
Q 036107          370 -THARSLKMCCHKKRMKDGMLVLNLMREMLSKGIV------PQESTHKMLAEELEKKSLGNAKERIDE  430 (441)
Q Consensus       370 -t~~~li~~~~~~g~~~~a~~~~~~~~~m~~~~~~------p~~~~~~~ll~~~~~~g~~~~a~~~~~  430 (441)
                       -|| |--+|...|.+++|.+.+=..-.|..++-.      ++...|.+|=.++.-.++.|.+.+...
T Consensus       500 ~RyN-lgIS~mNlG~ykEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~a~~  566 (579)
T KOG1125|consen  500 VRYN-LGISCMNLGAYKEAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQEAAP  566 (579)
T ss_pred             eehh-hhhhhhhhhhHHHHHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHHhcc
Confidence             354 555788999999998765555566655222      234578877777788888775555443

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.15  E-value=0.00082  Score=63.74  Aligned_cols=213  Identities=15%  Similarity=0.060  Sum_probs=153.6

Q ss_pred             CHHHHHHHHHHHHcCCChhHHHHHHHHHHHhcCCCccHHHHHHHHhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHh----
Q 036107          129 TPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKF----  204 (441)
Q Consensus       129 ~~~~y~~li~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~----  204 (441)
                      .+.+|=++-.-|.-.|+..+|++.|.+....++.+              ...|-..-++++-.|..|+|...+...    
T Consensus       311 ~a~sW~aVg~YYl~i~k~seARry~SKat~lD~~f--------------gpaWl~fghsfa~e~EhdQAmaaY~tAarl~  376 (611)
T KOG1173|consen  311 KALSWFAVGCYYLMIGKYSEARRYFSKATTLDPTF--------------GPAWLAFGHSFAGEGEHDQAMAAYFTAARLM  376 (611)
T ss_pred             CCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCccc--------------cHHHHHHhHHhhhcchHHHHHHHHHHHHHhc
Confidence            35567666666666677777777777766544222              346777777888888888888877654    


Q ss_pred             hhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC-CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHc----C--
Q 036107          205 KDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSP-DGVSYTCFIEHYCREKDFRKVDYTLKEMQEK----G--  277 (441)
Q Consensus       205 ~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~----g--  277 (441)
                      +....|..    -+---|.+.++++.|.+.|.+...  +.| |+...+-+--.....+.+.+|..+|+...+.    +  
T Consensus       377 ~G~hlP~L----Ylgmey~~t~n~kLAe~Ff~~A~a--i~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e  450 (611)
T KOG1173|consen  377 PGCHLPSL----YLGMEYMRTNNLKLAEKFFKQALA--IAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNE  450 (611)
T ss_pred             cCCcchHH----HHHHHHHHhccHHHHHHHHHHHHh--cCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhcccc
Confidence            22333433    233457778899999999988765  445 5566777666667788999999999987621    1  


Q ss_pred             CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCccchHHHHHHHHHhcCChhHHHHHHH
Q 036107          278 CKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQ  357 (441)
Q Consensus       278 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~~~li~~~~~~g~~~~a~~~~~  357 (441)
                      ...-..+++.|-++|.+.+.+++|...|+...... +-+..+                +.++--.|...|+++.|++.|.
T Consensus       451 ~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~-~k~~~~----------------~asig~iy~llgnld~Aid~fh  513 (611)
T KOG1173|consen  451 KIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLS-PKDAST----------------HASIGYIYHLLGNLDKAIDHFH  513 (611)
T ss_pred             ccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcC-CCchhH----------------HHHHHHHHHHhcChHHHHHHHH
Confidence            11245678999999999999999999999988753 224433                7777788888999999999999


Q ss_pred             HHHHcCCCCCHHHHHHHHHHHHh
Q 036107          358 KIEEDSCKPDCETHARSLKMCCH  380 (441)
Q Consensus       358 ~m~~~g~~p~~~t~~~li~~~~~  380 (441)
                      +-.  .+.||..+-..++..+..
T Consensus       514 KaL--~l~p~n~~~~~lL~~aie  534 (611)
T KOG1173|consen  514 KAL--ALKPDNIFISELLKLAIE  534 (611)
T ss_pred             HHH--hcCCccHHHHHHHHHHHH
Confidence            876  569999888888875543

>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=98.14  E-value=6e-05  Score=70.91  Aligned_cols=124  Identities=13%  Similarity=0.059  Sum_probs=77.7

Q ss_pred             CCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC--CCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH
Q 036107          207 CISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQH--GFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVIT  284 (441)
Q Consensus       207 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~--g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~  284 (441)
                      +.+.+......+++.+....+++.+..++.+.+..  ....-..|..++|+.|.+.|..++++++++.=...|+-||..+
T Consensus        61 ~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s  140 (429)
T PF10037_consen   61 KKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFS  140 (429)
T ss_pred             CCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhh
Confidence            44555666666666666666666666666666543  2222234445666667777666777666666666666677777


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhc
Q 036107          285 CTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKA  330 (441)
Q Consensus       285 ~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~  330 (441)
                      ||.||+.+.+.|++..|.++..+|...+...+..|+.-.+.+|.+.
T Consensus       141 ~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~  186 (429)
T PF10037_consen  141 FNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY  186 (429)
T ss_pred             HHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence            7777777777777777666666666655555555655555555555

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.14  E-value=0.0055  Score=55.01  Aligned_cols=184  Identities=12%  Similarity=0.089  Sum_probs=114.8

Q ss_pred             hhhHHHhhhhchhhHHHHHhhhcCchhhHHHHHHHHHhcCCChHHHHHHHhhhhhHhhhhcCCCCCCHHHHHHHHHHHHc
Q 036107           63 LASWVESLKLNEQSRISSHALSEDHETDVDKVSEILRKRYPSPDKVVEALKCFCFTWAKTQTGYMHTPETYNAMVEALGK  142 (441)
Q Consensus        63 l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~g~~p~~~~y~~li~~~~~  142 (441)
                      |.-....++...|..++.+-...+..... .+.-.+..++-..|+.++|+.++.+...    .-.|+...+-.+-....-
T Consensus        29 Ledfls~rDytGAislLefk~~~~~EEE~-~~~lWia~C~fhLgdY~~Al~~Y~~~~~----~~~~~~el~vnLAcc~Fy  103 (557)
T KOG3785|consen   29 LEDFLSNRDYTGAISLLEFKLNLDREEED-SLQLWIAHCYFHLGDYEEALNVYTFLMN----KDDAPAELGVNLACCKFY  103 (557)
T ss_pred             HHHHHhcccchhHHHHHHHhhccchhhhH-HHHHHHHHHHHhhccHHHHHHHHHHHhc----cCCCCcccchhHHHHHHH
Confidence            66666778888888888887766655553 5666788899999999999999965433    333566666666666666


Q ss_pred             CCChhHHHHHHHHHHHhcCCCccHHHHHHHHhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcHHHHHHHHHHH
Q 036107          143 SKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGW  222 (441)
Q Consensus       143 ~~~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~  222 (441)
                      .|.+.+|..+-++..+                  ++-.-..+++...+.|+-++-..+.+.+.+..    .---+|....
T Consensus       104 Lg~Y~eA~~~~~ka~k------------------~pL~~RLlfhlahklndEk~~~~fh~~LqD~~----EdqLSLAsvh  161 (557)
T KOG3785|consen  104 LGQYIEAKSIAEKAPK------------------TPLCIRLLFHLAHKLNDEKRILTFHSSLQDTL----EDQLSLASVH  161 (557)
T ss_pred             HHHHHHHHHHHhhCCC------------------ChHHHHHHHHHHHHhCcHHHHHHHHHHHhhhH----HHHHhHHHHH
Confidence            7888888887665433                  44455556666667777777766666664311    1112222222


Q ss_pred             HhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHH-HHHhcCCHHHHHHHHHHHHH
Q 036107          223 CKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIE-HYCREKDFRKVDYTLKEMQE  275 (441)
Q Consensus       223 ~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~-~~~~~g~~~~a~~l~~~m~~  275 (441)
                      --.-.+.+|.++|.+....  .|+....|.-+. +|.+..-++-+.++++--.+
T Consensus       162 YmR~HYQeAIdvYkrvL~d--n~ey~alNVy~ALCyyKlDYydvsqevl~vYL~  213 (557)
T KOG3785|consen  162 YMRMHYQEAIDVYKRVLQD--NPEYIALNVYMALCYYKLDYYDVSQEVLKVYLR  213 (557)
T ss_pred             HHHHHHHHHHHHHHHHHhc--ChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHH
Confidence            2233567777777777654  245555554443 34455555666666655433

>PLN02789 farnesyltranstransferase

Probab=98.14  E-value=0.0064  Score=55.91  Aligned_cols=215  Identities=6%  Similarity=-0.026  Sum_probs=145.2

Q ss_pred             HHHHHHHHHHcCCChhHHHHHHHHHHHhcCCCccHHHHHHHHhhcCHHHHHHHHHHHHhcC-CHHHHHHHHHHhhhCCCC
Q 036107          132 TYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRN-SVAHAYKVFLKFKDCISL  210 (441)
Q Consensus       132 ~y~~li~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~a~~~~~~~~~~~~~  210 (441)
                      +++.+-..+...++.++|+.+.+++.+..+.              +..+|+.--..+...| ++++++..++.+-...+.
T Consensus        39 a~~~~ra~l~~~e~serAL~lt~~aI~lnP~--------------~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npk  104 (320)
T PLN02789         39 AMDYFRAVYASDERSPRALDLTADVIRLNPG--------------NYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPK  104 (320)
T ss_pred             HHHHHHHHHHcCCCCHHHHHHHHHHHHHCch--------------hHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCc
Confidence            4555556667778999999999998885533              3445555445555666 679999999988655566


Q ss_pred             cHHHHHHHHHHHHhcCC--HHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 036107          211 SSQIFDVLIHGWCKTRK--SDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIV  288 (441)
Q Consensus       211 ~~~~~~~li~~~~~~~~--~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~l  288 (441)
                      +..+|+..--.+.+.|.  .++++.+++++.+... -|..+|+...-++.+.|+++++++.++++.+.+.. |...|+..
T Consensus       105 nyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~dp-kNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R  182 (320)
T PLN02789        105 NYQIWHHRRWLAEKLGPDAANKELEFTRKILSLDA-KNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQR  182 (320)
T ss_pred             chHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHH
Confidence            77778766555556665  3678889988887542 47789999888999999999999999999988765 66777776


Q ss_pred             HHHHHhc---CCH----HHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCccchHHHHHHHHHhc----CChhHHHHHHH
Q 036107          289 MHALEKA---KQI----YEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVR----SEEGNALKLRQ  357 (441)
Q Consensus       289 l~~~~~~---~~~----~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~~~li~~~~~~----g~~~~a~~~~~  357 (441)
                      ...+.+.   |..    ++..+....+.... +-|...                |+-+...+...    ++..+|.+.+.
T Consensus       183 ~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~-P~N~Sa----------------W~Yl~~ll~~~~~~l~~~~~~~~~~~  245 (320)
T PLN02789        183 YFVITRSPLLGGLEAMRDSELKYTIDAILAN-PRNESP----------------WRYLRGLFKDDKEALVSDPEVSSVCL  245 (320)
T ss_pred             HHHHHhccccccccccHHHHHHHHHHHHHhC-CCCcCH----------------HHHHHHHHhcCCcccccchhHHHHHH
Confidence            6655554   222    35566665665542 223333                55555555442    33456777777


Q ss_pred             HHHHcCCCCCHHHHHHHHHHHHh
Q 036107          358 KIEEDSCKPDCETHARSLKMCCH  380 (441)
Q Consensus       358 ~m~~~g~~p~~~t~~~li~~~~~  380 (441)
                      +....+ ..+......|++.|+.
T Consensus       246 ~~~~~~-~~s~~al~~l~d~~~~  267 (320)
T PLN02789        246 EVLSKD-SNHVFALSDLLDLLCE  267 (320)
T ss_pred             Hhhccc-CCcHHHHHHHHHHHHh
Confidence            765432 3355667777887775

>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends

Probab=98.13  E-value=4e-05  Score=56.77  Aligned_cols=75  Identities=19%  Similarity=0.330  Sum_probs=35.3

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHhcC--------CHHHHHHHHHHHhhCCCCCCHHHHHHH
Q 036107          253 FIEHYCREKDFRKVDYTLKEMQEKGC-KPSVITCTIVMHALEKAK--------QIYEALKVYEKMKSDDCLTDTSFYSSL  323 (441)
Q Consensus       253 li~~~~~~g~~~~a~~l~~~m~~~g~-~p~~~~~~~ll~~~~~~~--------~~~~a~~~~~~m~~~g~~~~~~~~~~l  323 (441)
                      .|..|...+++.....+|+.+++.|+ .|+..+|+.++.+.++..        ++-....+|+.|...+++|+..+|+.+
T Consensus        31 ~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYniv  110 (120)
T PF08579_consen   31 NINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNIV  110 (120)
T ss_pred             HHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHHH
Confidence            33334444555555555555555554 445555555554444322        122344455555555555555554444


Q ss_pred             HHHH
Q 036107          324 IFIL  327 (441)
Q Consensus       324 i~~~  327 (441)
                      +..+
T Consensus       111 l~~L  114 (120)
T PF08579_consen  111 LGSL  114 (120)
T ss_pred             HHHH
Confidence            4443

Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].

>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]

Probab=98.13  E-value=0.0012  Score=68.94  Aligned_cols=229  Identities=11%  Similarity=0.015  Sum_probs=154.3

Q ss_pred             CHHHHHHHHHHHHcCCChhHHHHHHHHHHHhcCCCccHHHHHHHHhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCC
Q 036107          129 TPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCI  208 (441)
Q Consensus       129 ~~~~y~~li~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~  208 (441)
                      +...|-.-|.-..+.++.+.|++++++....-+.....         --...|.++++.-...|.-+...++|++..+-+
T Consensus      1457 SSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REee---------EKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc 1527 (1710)
T KOG1070|consen 1457 SSILWIRYMAFHLELSEIEKARKIAERALKTINFREEE---------EKLNIWIAYLNLENAYGTEESLKKVFERACQYC 1527 (1710)
T ss_pred             cchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhH---------HHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc
Confidence            35678888888888888888888888876632111100         023566677777777788888888888875533


Q ss_pred             CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHH
Q 036107          209 SLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKP-SVITCTI  287 (441)
Q Consensus       209 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p-~~~~~~~  287 (441)
                      .| ..+|..|...|.+.+..++|-++|+.|.+. +.-....|...+..+.++.+-++|..++.+..+.=.+- ......-
T Consensus      1528 d~-~~V~~~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~Isk 1605 (1710)
T KOG1070|consen 1528 DA-YTVHLKLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISK 1605 (1710)
T ss_pred             ch-HHHHHHHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHH
Confidence            22 235778888888888888888888888865 33466778888888888888888888888766542111 1222333


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHhhCCC-CCCHHHHHHHHHHHHhcCccchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC
Q 036107          288 VMHALEKAKQIYEALKVYEKMKSDDC-LTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKP  366 (441)
Q Consensus       288 ll~~~~~~~~~~~a~~~~~~m~~~g~-~~~~~~~~~li~~~~~~g~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p  366 (441)
                      ....-.+.|+.+.++.+|+....... +.|                  .|+..|..-.++|+.+.+..+|++..+.++.|
T Consensus      1606 fAqLEFk~GDaeRGRtlfEgll~ayPKRtD------------------lW~VYid~eik~~~~~~vR~lfeRvi~l~l~~ 1667 (1710)
T KOG1070|consen 1606 FAQLEFKYGDAERGRTLFEGLLSAYPKRTD------------------LWSVYIDMEIKHGDIKYVRDLFERVIELKLSI 1667 (1710)
T ss_pred             HHHHHhhcCCchhhHHHHHHHHhhCccchh------------------HHHHHHHHHHccCCHHHHHHHHHHHHhcCCCh
Confidence            34444677888888888887766432 222                  28888888888888888888888888887776


Q ss_pred             CHH--HHHHHHHHHHhcCChhh
Q 036107          367 DCE--THARSLKMCCHKKRMKD  386 (441)
Q Consensus       367 ~~~--t~~~li~~~~~~g~~~~  386 (441)
                      -..  .|.-.+..=-+.|+-+.
T Consensus      1668 kkmKfffKkwLeyEk~~Gde~~ 1689 (1710)
T KOG1070|consen 1668 KKMKFFFKKWLEYEKSHGDEKN 1689 (1710)
T ss_pred             hHhHHHHHHHHHHHHhcCchhh
Confidence            543  44445544444454433

>PRK04841 transcriptional regulator MalT; Provisional

Probab=98.11  E-value=0.0063  Score=65.19  Aligned_cols=280  Identities=8%  Similarity=-0.045  Sum_probs=169.5

Q ss_pred             HHHHcCCChhHHHHHHHHHHHhcCCCccHHHHHHHHhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhh---C-CCC--c
Q 036107          138 EALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKD---C-ISL--S  211 (441)
Q Consensus       138 ~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~---~-~~~--~  211 (441)
                      ..+...|++++|...+++.....+... .  ..      -....+.+-..+...|++++|...+.+...   . ..+  .
T Consensus       460 ~~~~~~g~~~~A~~~~~~al~~~~~~~-~--~~------~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~  530 (903)
T PRK04841        460 QVAINDGDPEEAERLAELALAELPLTW-Y--YS------RIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYA  530 (903)
T ss_pred             HHHHhCCCHHHHHHHHHHHHhcCCCcc-H--HH------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHH
Confidence            345578999999999988765321110 0  00      113445566677889999999999987622   1 111  2


Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHhh----CCCC--C-CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCC--
Q 036107          212 SQIFDVLIHGWCKTRKSDYAQKAMKEMFQ----HGFS--P-DGVSYTCFIEHYCREKDFRKVDYTLKEMQEK--GCKP--  280 (441)
Q Consensus       212 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~----~g~~--p-~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~--g~~p--  280 (441)
                      ..++..+-..+...|+++.|...+++...    .|..  + ....+..+-..+...|++++|...+++....  ...+  
T Consensus       531 ~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~  610 (903)
T PRK04841        531 LWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQ  610 (903)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchH
Confidence            23455566678889999999998887654    2221  1 2233445555677789999999999887543  1112  


Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC-HHHHHHHHHHHHhcCccchHHHHHHHHHhcCChhHHHHHHHHH
Q 036107          281 SVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTD-TSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKI  359 (441)
Q Consensus       281 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~-~~~~~~li~~~~~~g~~~~~~~li~~~~~~g~~~~a~~~~~~m  359 (441)
                      ....+..+.......|++++|.+.+.......-... ...+..           ..-...+..+...|+.+.|...+...
T Consensus       611 ~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~g~~~~A~~~l~~~  679 (903)
T PRK04841        611 QLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIA-----------NADKVRLIYWQMTGDKEAAANWLRQA  679 (903)
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhh-----------HHHHHHHHHHHHCCCHHHHHHHHHhc
Confidence            234455566678889999999999988754211100 000000           00111224455678888888887775


Q ss_pred             HHcCCCCCH---HHHHHHHHHHHhcCChhhHHHHHHHHHHHHH-CCCCCC-HHHHHHHHHHHHhcCCccHHHHHHHHHHH
Q 036107          360 EEDSCKPDC---ETHARSLKMCCHKKRMKDGMLVLNLMREMLS-KGIVPQ-ESTHKMLAEELEKKSLGNAKERIDELLTH  434 (441)
Q Consensus       360 ~~~g~~p~~---~t~~~li~~~~~~g~~~~a~~~~~~~~~m~~-~~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~m~~  434 (441)
                      .........   ..+..+..++...|+.++|...++......+ .|..++ ..+...+-.++.+.|+.++|.+.+.....
T Consensus       680 ~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~  759 (903)
T PRK04841        680 PKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALK  759 (903)
T ss_pred             CCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            432211111   1134556677788999888776554443322 244433 23566677778899999999888887665


Q ss_pred             Hhh
Q 036107          435 ATE  437 (441)
Q Consensus       435 ~~~  437 (441)
                      ..+
T Consensus       760 la~  762 (903)
T PRK04841        760 LAN  762 (903)
T ss_pred             HhC
Confidence            443

>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]

Probab=98.11  E-value=0.0038  Score=65.38  Aligned_cols=234  Identities=10%  Similarity=0.025  Sum_probs=178.6

Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCC-----cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHH
Q 036107          177 DTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISL-----SSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYT  251 (441)
Q Consensus       177 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~-----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~  251 (441)
                      ....|-..|......++.+.|.+++++.-..+.+     -...|-++++.-.--|.-+...++|++..+.  .-....|.
T Consensus      1457 SSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy--cd~~~V~~ 1534 (1710)
T KOG1070|consen 1457 SSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY--CDAYTVHL 1534 (1710)
T ss_pred             cchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh--cchHHHHH
Confidence            4577888888999999999999999987433322     2235888888777778889999999999874  22346788


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhc
Q 036107          252 CFIEHYCREKDFRKVDYTLKEMQEK-GCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKA  330 (441)
Q Consensus       252 ~li~~~~~~g~~~~a~~l~~~m~~~-g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~  330 (441)
                      .|...|.+.+.+++|.++++.|.+. |  -....|...+..+.+..+-++|..++.+..+.  .|...+.          
T Consensus      1535 ~L~~iy~k~ek~~~A~ell~~m~KKF~--q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~--lPk~eHv---------- 1600 (1710)
T KOG1070|consen 1535 KLLGIYEKSEKNDEADELLRLMLKKFG--QTRKVWIMYADFLLRQNEAEAARELLKRALKS--LPKQEHV---------- 1600 (1710)
T ss_pred             HHHHHHHHhhcchhHHHHHHHHHHHhc--chhhHHHHHHHHHhcccHHHHHHHHHHHHHhh--cchhhhH----------
Confidence            9999999999999999999999875 4  46788999999999999999999999988775  2321110          


Q ss_pred             CccchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCCCCHH--H
Q 036107          331 VRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQES--T  408 (441)
Q Consensus       331 g~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~~~~m~~~~~~p~~~--~  408 (441)
                         ....-.+..-.+.|+.+.+-.+|+.....- .--...|+..|+.=.++|+.+.++.   +|++....++.|-..  .
T Consensus      1601 ---~~IskfAqLEFk~GDaeRGRtlfEgll~ay-PKRtDlW~VYid~eik~~~~~~vR~---lfeRvi~l~l~~kkmKff 1673 (1710)
T KOG1070|consen 1601 ---EFISKFAQLEFKYGDAERGRTLFEGLLSAY-PKRTDLWSVYIDMEIKHGDIKYVRD---LFERVIELKLSIKKMKFF 1673 (1710)
T ss_pred             ---HHHHHHHHHHhhcCCchhhHHHHHHHHhhC-ccchhHHHHHHHHHHccCCHHHHHH---HHHHHHhcCCChhHhHHH
Confidence               123444455567889999999999887542 1223459999999999999999877   777877788877543  7


Q ss_pred             HHHHHHHHHhcCCccHHHHHHHHHH
Q 036107          409 HKMLAEELEKKSLGNAKERIDELLT  433 (441)
Q Consensus       409 ~~~ll~~~~~~g~~~~a~~~~~~m~  433 (441)
                      |...+..=...|+-+.++.+=....
T Consensus      1674 fKkwLeyEk~~Gde~~vE~VKarA~ 1698 (1710)
T KOG1070|consen 1674 FKKWLEYEKSHGDEKNVEYVKARAK 1698 (1710)
T ss_pred             HHHHHHHHHhcCchhhHHHHHHHHH
Confidence            8888877777888877776655443

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=98.10  E-value=0.012  Score=57.12  Aligned_cols=253  Identities=9%  Similarity=-0.017  Sum_probs=136.5

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHhhhC--CCCcHHHHHHHHHH------HHhcCCHHHHHHHHHHHhhCCCCCCHhh
Q 036107          178 TRAMSVLMDTLVKRNSVAHAYKVFLKFKDC--ISLSSQIFDVLIHG------WCKTRKSDYAQKAMKEMFQHGFSPDGVS  249 (441)
Q Consensus       178 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~~~~li~~------~~~~~~~~~a~~~~~~m~~~g~~p~~~~  249 (441)
                      ...|..+..+.--.|+...|..+.+...+.  -.|+...|......      ..+.|..+.|++-+.+-... + .|-..
T Consensus       143 ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~-i-~Dkla  220 (700)
T KOG1156|consen  143 RASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ-I-VDKLA  220 (700)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH-H-HHHHH
Confidence            345555556666667777777777766432  24555555544433      23455666666655443321 1 12222


Q ss_pred             -HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH-hcCCHHHHH-HHHHHHhhC---CCCCC-------
Q 036107          250 -YTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALE-KAKQIYEAL-KVYEKMKSD---DCLTD-------  316 (441)
Q Consensus       250 -~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~-~~~~~~~a~-~~~~~m~~~---g~~~~-------  316 (441)
                       -.+--.-+.+.+++++|..++..+....  ||..-|.-.+..+. +..+..++. .+|....+.   .-.|-       
T Consensus       221 ~~e~ka~l~~kl~~lEeA~~~y~~Ll~rn--Pdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl  298 (700)
T KOG1156|consen  221 FEETKADLLMKLGQLEEAVKVYRRLLERN--PDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVL  298 (700)
T ss_pred             HhhhHHHHHHHHhhHHhHHHHHHHHHhhC--chhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHh
Confidence             2233344566677777777777776652  55555554443333 333333333 555554332   11110       


Q ss_pred             -----HHHHHHHHHHHHhcCccchHHHHHHHHHhcCChhHHHHHHHHHHH----cC----------CCCCHH--HHHHHH
Q 036107          317 -----TSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEE----DS----------CKPDCE--THARSL  375 (441)
Q Consensus       317 -----~~~~~~li~~~~~~g~~~~~~~li~~~~~~g~~~~a~~~~~~m~~----~g----------~~p~~~--t~~~li  375 (441)
                           ...+.-.+.-..+.|-+.++..+.+.|-.....+-..++.-.+..    .|          -.|+..  |+--++
T Consensus       299 ~~eel~~~vdkyL~~~l~Kg~p~vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~la  378 (700)
T KOG1156|consen  299 NGEELKEIVDKYLRPLLSKGVPSVFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLA  378 (700)
T ss_pred             CcchhHHHHHHHHHHHhhcCCCchhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHH
Confidence                 011222233333334446677777666554433322222222221    11          145554  344566


Q ss_pred             HHHHhcCChhhHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCccHHHHHHHHHHHHhhhc
Q 036107          376 KMCCHKKRMKDGMLVLNLMREMLSKGIVPQES-THKMLAEELEKKSLGNAKERIDELLTHATEQR  439 (441)
Q Consensus       376 ~~~~~~g~~~~a~~~~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~  439 (441)
                      ..+-+.|+++.|..   +++.  .-+..|+.. .|..=.+.+..+|++++|..++++-+..-.++
T Consensus       379 qh~D~~g~~~~A~~---yId~--AIdHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aD  438 (700)
T KOG1156|consen  379 QHYDKLGDYEVALE---YIDL--AIDHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTAD  438 (700)
T ss_pred             HHHHHcccHHHHHH---HHHH--HhccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchh
Confidence            67778899999977   4555  335677766 66666788999999999999999887665444

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.10  E-value=0.0035  Score=54.92  Aligned_cols=275  Identities=10%  Similarity=0.087  Sum_probs=163.6

Q ss_pred             cccccchhhHHHhhhhchhhHHHHHhhhcCchhhHHHHHHHHHhcCCChHHHHHHHhhhhhHhhhhcCCCCCCHHHHHH-
Q 036107           57 DFVIPSLASWVESLKLNEQSRISSHALSEDHETDVDKVSEILRKRYPSPDKVVEALKCFCFTWAKTQTGYMHTPETYNA-  135 (441)
Q Consensus        57 ~~~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~g~~p~~~~y~~-  135 (441)
                      --+.+++....+-.++..+.++...-.+......  .-.+.|..+|....++..|...+...-     -..|...-|.. 
T Consensus        11 Geftaviy~lI~d~ry~DaI~~l~s~~Er~p~~r--AgLSlLgyCYY~~Q~f~~AA~CYeQL~-----ql~P~~~qYrlY   83 (459)
T KOG4340|consen   11 GEFTAVVYRLIRDARYADAIQLLGSELERSPRSR--AGLSLLGYCYYRLQEFALAAECYEQLG-----QLHPELEQYRLY   83 (459)
T ss_pred             CchHHHHHHHHHHhhHHHHHHHHHHHHhcCccch--HHHHHHHHHHHHHHHHHHHHHHHHHHH-----hhChHHHHHHHH
Confidence            3456667777777777777777665554443222  355667788888888888888874221     22344443332 


Q ss_pred             HHHHHHcCCChhHHHHHHHHHHHhcCCCccHHHHHHHHhhcCHHHHHHHHHH--HHhcCCHHHHHHHHHHhhhCCCCcHH
Q 036107          136 MVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDT--LVKRNSVAHAYKVFLKFKDCISLSSQ  213 (441)
Q Consensus       136 li~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~--~~~~g~~~~a~~~~~~~~~~~~~~~~  213 (441)
                      --..+-+.+.+.+|+.+...|.... .               ...-..-+.+  .-..+++..+..+.++....  -+..
T Consensus        84 ~AQSLY~A~i~ADALrV~~~~~D~~-~---------------L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~e--n~Ad  145 (459)
T KOG4340|consen   84 QAQSLYKACIYADALRVAFLLLDNP-A---------------LHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSE--NEAD  145 (459)
T ss_pred             HHHHHHHhcccHHHHHHHHHhcCCH-H---------------HHHHHHHHHHHHhcccccCcchHHHHHhccCC--Cccc
Confidence            1234566788888888888876522 1               1111111111  22457777888888777531  1222


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHhhC-CCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-------------
Q 036107          214 IFDVLIHGWCKTRKSDYAQKAMKEMFQH-GFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCK-------------  279 (441)
Q Consensus       214 ~~~~li~~~~~~~~~~~a~~~~~~m~~~-g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~-------------  279 (441)
                      +.+..-....+.|+++.|.+-|+...+- |.. ....||.-+..| +.|+++.|++...++.+.|++             
T Consensus       146 ~~in~gCllykegqyEaAvqkFqaAlqvsGyq-pllAYniALaHy-~~~qyasALk~iSEIieRG~r~HPElgIGm~teg  223 (459)
T KOG4340|consen  146 GQINLGCLLYKEGQYEAAVQKFQAALQVSGYQ-PLLAYNLALAHY-SSRQYASALKHISEIIERGIRQHPELGIGMTTEG  223 (459)
T ss_pred             hhccchheeeccccHHHHHHHHHHHHhhcCCC-chhHHHHHHHHH-hhhhHHHHHHHHHHHHHhhhhcCCccCccceecc
Confidence            3333333446788899988888887764 444 456777766544 457888888888888877653             


Q ss_pred             CCH--------HHHHHHHHH-------HHhcCCHHHHHHHHHHHhhC-CCCCCHHHHHH--HHHHHHhcCcc--------
Q 036107          280 PSV--------ITCTIVMHA-------LEKAKQIYEALKVYEKMKSD-DCLTDTSFYSS--LIFILSKAVRF--------  333 (441)
Q Consensus       280 p~~--------~~~~~ll~~-------~~~~~~~~~a~~~~~~m~~~-g~~~~~~~~~~--li~~~~~~g~~--------  333 (441)
                      ||+        ..-+.++.+       +.+.|+++.|.+-+..|.-+ .-..|.+|...  +.++-++-+.-        
T Consensus       224 iDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n~~~~p~~g~~KLqFLL  303 (459)
T KOG4340|consen  224 IDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMNMDARPTEGFEKLQFLL  303 (459)
T ss_pred             CchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhcccCCccccHHHHHHHH
Confidence            121        112333333       45778888888888888642 22334444332  22222221111        


Q ss_pred             -------chHHHHHHHHHhcCChhHHHHHHHH
Q 036107          334 -------LIYNTMISSACVRSEEGNALKLRQK  358 (441)
Q Consensus       334 -------~~~~~li~~~~~~g~~~~a~~~~~~  358 (441)
                             .||..++-.||++.-++.|-+++.+
T Consensus       304 ~~nPfP~ETFANlLllyCKNeyf~lAADvLAE  335 (459)
T KOG4340|consen  304 QQNPFPPETFANLLLLYCKNEYFDLAADVLAE  335 (459)
T ss_pred             hcCCCChHHHHHHHHHHhhhHHHhHHHHHHhh
Confidence                   6777788888888888877777755

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=98.09  E-value=0.00093  Score=58.99  Aligned_cols=174  Identities=9%  Similarity=-0.034  Sum_probs=91.3

Q ss_pred             cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCH----hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CC-HHH
Q 036107          211 SSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDG----VSYTCFIEHYCREKDFRKVDYTLKEMQEKGCK-PS-VIT  284 (441)
Q Consensus       211 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~----~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~-p~-~~~  284 (441)
                      ....+-.+...+.+.|+++.|...|++....  .|+.    ..+..+..++.+.|++++|...++++.+..-. |. ..+
T Consensus        32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a  109 (235)
T TIGR03302        32 PAEELYEEAKEALDSGDYTEAIKYFEALESR--YPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYA  109 (235)
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHH
Confidence            4445556666677777777777777776653  2321    34556666777777777777777777654221 11 113


Q ss_pred             HHHHHHHHHhc--------CCHHHHHHHHHHHhhCCCCCCHH-HHHHHH---HHHHhcCccchHHHHHHHHHhcCChhHH
Q 036107          285 CTIVMHALEKA--------KQIYEALKVYEKMKSDDCLTDTS-FYSSLI---FILSKAVRFLIYNTMISSACVRSEEGNA  352 (441)
Q Consensus       285 ~~~ll~~~~~~--------~~~~~a~~~~~~m~~~g~~~~~~-~~~~li---~~~~~~g~~~~~~~li~~~~~~g~~~~a  352 (441)
                      +..+-.++.+.        |++++|.+.|+.+.+..  |+.. .+..+.   ......+  ...-.+-..|.+.|++++|
T Consensus       110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~a~~~~~~~~~~~~--~~~~~~a~~~~~~g~~~~A  185 (235)
T TIGR03302       110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRY--PNSEYAPDAKKRMDYLRNRLA--GKELYVARFYLKRGAYVAA  185 (235)
T ss_pred             HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHC--CCChhHHHHHHHHHHHHHHHH--HHHHHHHHHHHHcCChHHH
Confidence            33333344433        66777888887777642  2221 111110   0000000  0012334455666666666


Q ss_pred             HHHHHHHHHcCC-CC-CHHHHHHHHHHHHhcCChhhHHHH
Q 036107          353 LKLRQKIEEDSC-KP-DCETHARSLKMCCHKKRMKDGMLV  390 (441)
Q Consensus       353 ~~~~~~m~~~g~-~p-~~~t~~~li~~~~~~g~~~~a~~~  390 (441)
                      +..+++..+..- .| ....+..+..++.+.|++++|..+
T Consensus       186 ~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~  225 (235)
T TIGR03302       186 INRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDA  225 (235)
T ss_pred             HHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHH
Confidence            666666654311 12 234555666666666666666553

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends

Probab=98.08  E-value=9.1e-05  Score=54.95  Aligned_cols=78  Identities=14%  Similarity=0.203  Sum_probs=60.8

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHhhCCC-CCCHhhHHHHHHHHHhcC--------CHHHHHHHHHHHHHcCCCCCHHHHHH
Q 036107          217 VLIHGWCKTRKSDYAQKAMKEMFQHGF-SPDGVSYTCFIEHYCREK--------DFRKVDYTLKEMQEKGCKPSVITCTI  287 (441)
Q Consensus       217 ~li~~~~~~~~~~~a~~~~~~m~~~g~-~p~~~~~~~li~~~~~~g--------~~~~a~~l~~~m~~~g~~p~~~~~~~  287 (441)
                      .-|..+...+++.....+|+.+++.|+ .|++.+|+.++.+.++..        +.-+.+.+++.|...+++|+..||+.
T Consensus        30 ~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYni  109 (120)
T PF08579_consen   30 DNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNI  109 (120)
T ss_pred             HHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHH
Confidence            345556666888888888888888888 888888888888877643        23356778888888888999999988


Q ss_pred             HHHHHHh
Q 036107          288 VMHALEK  294 (441)
Q Consensus       288 ll~~~~~  294 (441)
                      ++..+.+
T Consensus       110 vl~~Llk  116 (120)
T PF08579_consen  110 VLGSLLK  116 (120)
T ss_pred             HHHHHHH
Confidence            8887765

Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].

>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat

Probab=98.07  E-value=5.4e-06  Score=47.10  Aligned_cols=31  Identities=26%  Similarity=0.449  Sum_probs=27.5

Q ss_pred             chHHHHHHHHHhcCChhHHHHHHHHHHHcCC
Q 036107          334 LIYNTMISSACVRSEEGNALKLRQKIEEDSC  364 (441)
Q Consensus       334 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~  364 (441)
                      .+||+||++|++.|++++|.++|++|.+.|+
T Consensus         1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~   31 (31)
T PF01535_consen    1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI   31 (31)
T ss_pred             CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence            3699999999999999999999999998774

Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=98.07  E-value=0.002  Score=63.91  Aligned_cols=309  Identities=10%  Similarity=0.047  Sum_probs=185.0

Q ss_pred             HHHHHH--hcCCChHHHHHHHhhhhhHhhhhcCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHhcCCCccHHHHHH
Q 036107           94 VSEILR--KRYPSPDKVVEALKCFCFTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMST  171 (441)
Q Consensus        94 ~~~~l~--~~~~~~g~~~~A~~~~~~~~~~~~~g~~p~~~~y~~li~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~  171 (441)
                      ....++  +.|..-|+.+.|.+..+++.         +-..|..|-+.|.+.++++-|.-.+-.|....    ....+..
T Consensus       728 TRkaml~FSfyvtiG~MD~AfksI~~Ik---------S~~vW~nmA~McVkT~RLDVAkVClGhm~~aR----gaRAlR~  794 (1416)
T KOG3617|consen  728 TRKAMLDFSFYVTIGSMDAAFKSIQFIK---------SDSVWDNMASMCVKTRRLDVAKVCLGHMKNAR----GARALRR  794 (1416)
T ss_pred             HHHhhhceeEEEEeccHHHHHHHHHHHh---------hhHHHHHHHHHhhhhccccHHHHhhhhhhhhh----hHHHHHH
Confidence            334444  67889999999987775543         55889999999999999999999988887633    1222222


Q ss_pred             HHhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHH
Q 036107          172 VMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYT  251 (441)
Q Consensus       172 ~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~  251 (441)
                      ....++ ++-.-+.-.....|.+|+|+.+|.+-+.        |..|=..|-..|.|++|.++-+.=-+-.+   ..||.
T Consensus       795 a~q~~~-e~eakvAvLAieLgMlEeA~~lYr~ckR--------~DLlNKlyQs~g~w~eA~eiAE~~DRiHL---r~Tyy  862 (1416)
T KOG3617|consen  795 AQQNGE-EDEAKVAVLAIELGMLEEALILYRQCKR--------YDLLNKLYQSQGMWSEAFEIAETKDRIHL---RNTYY  862 (1416)
T ss_pred             HHhCCc-chhhHHHHHHHHHhhHHHHHHHHHHHHH--------HHHHHHHHHhcccHHHHHHHHhhccceeh---hhhHH
Confidence            222222 3333444455678999999999988865        66666777788999999988765433222   23555


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHH----------HcC---------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCC
Q 036107          252 CFIEHYCREKDFRKVDYTLKEMQ----------EKG---------CKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDD  312 (441)
Q Consensus       252 ~li~~~~~~g~~~~a~~l~~~m~----------~~g---------~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g  312 (441)
                      .--.-+-..+|.+.|++.|++-.          ...         -.-|...|..--...-..|+.+.|..+|...++. 
T Consensus       863 ~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D~-  941 (1416)
T KOG3617|consen  863 NYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKDY-  941 (1416)
T ss_pred             HHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhhh-
Confidence            55555556677777777766421          111         1224444555555556678888888777766542 


Q ss_pred             CCCCHHHHHHHHHHHHhcCcc-------------chHHHHHHHHHhcCChhHHHHHHHHHH----------HcCCC----
Q 036107          313 CLTDTSFYSSLIFILSKAVRF-------------LIYNTMISSACVRSEEGNALKLRQKIE----------EDSCK----  365 (441)
Q Consensus       313 ~~~~~~~~~~li~~~~~~g~~-------------~~~~~li~~~~~~g~~~~a~~~~~~m~----------~~g~~----  365 (441)
                              -+++...|-.|+.             ...-.+-+.|-..|++.+|..+|-+..          +.+++    
T Consensus       942 --------fs~VrI~C~qGk~~kAa~iA~esgd~AAcYhlaR~YEn~g~v~~Av~FfTrAqafsnAIRlcKEnd~~d~L~ 1013 (1416)
T KOG3617|consen  942 --------FSMVRIKCIQGKTDKAARIAEESGDKAACYHLARMYENDGDVVKAVKFFTRAQAFSNAIRLCKENDMKDRLA 1013 (1416)
T ss_pred             --------hhheeeEeeccCchHHHHHHHhcccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence                    1222222222322             445567888999999999999986543          12211    


Q ss_pred             -------CCHH------------HHHHHHHHHHhcCChhhHHHHHH-----HHHHHHHC--CCCCCHHHHHHHHHHHHhc
Q 036107          366 -------PDCE------------THARSLKMCCHKKRMKDGMLVLN-----LMREMLSK--GIVPQESTHKMLAEELEKK  419 (441)
Q Consensus       366 -------p~~~------------t~~~li~~~~~~g~~~~a~~~~~-----~~~~m~~~--~~~p~~~~~~~ll~~~~~~  419 (441)
                             |...            -+...+..|-+.|.+.+|.++.-     ..-+++..  .-..|+...+--.+-++..
T Consensus      1014 nlal~s~~~d~v~aArYyEe~g~~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~~~ 1093 (1416)
T KOG3617|consen 1014 NLALMSGGSDLVSAARYYEELGGYAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADFFENN 1093 (1416)
T ss_pred             HHHhhcCchhHHHHHHHHHHcchhhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHHhH
Confidence                   1000            12233344555555555544210     11111222  3344566666666667777


Q ss_pred             CCccHHHHHHHHHHHHh
Q 036107          420 SLGNAKERIDELLTHAT  436 (441)
Q Consensus       420 g~~~~a~~~~~~m~~~~  436 (441)
                      .++++|..++-.-++..
T Consensus      1094 ~qyekAV~lL~~ar~~~ 1110 (1416)
T KOG3617|consen 1094 QQYEKAVNLLCLAREFS 1110 (1416)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            77777777665554443

>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat

Probab=98.06  E-value=6e-06  Score=46.92  Aligned_cols=25  Identities=32%  Similarity=0.607  Sum_probs=9.5

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHh
Q 036107          215 FDVLIHGWCKTRKSDYAQKAMKEMF  239 (441)
Q Consensus       215 ~~~li~~~~~~~~~~~a~~~~~~m~  239 (441)
                      ||++|++|++.|++++|.++|++|.
T Consensus         3 y~~li~~~~~~~~~~~a~~~~~~M~   27 (31)
T PF01535_consen    3 YNSLISGYCKMGQFEEALEVFDEMR   27 (31)
T ss_pred             HHHHHHHHHccchHHHHHHHHHHHh
Confidence            3333333333333333333333333

Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.04  E-value=0.0051  Score=56.37  Aligned_cols=269  Identities=10%  Similarity=0.007  Sum_probs=138.1

Q ss_pred             CHHHHHHHHHHHHcCCChhHHHHHHHHHHHhcCCCccHHHHHHHHhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCC
Q 036107          129 TPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCI  208 (441)
Q Consensus       129 ~~~~y~~li~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~  208 (441)
                      ++.....+-..+...|+.++|...|++.+..++.              +.......--.+.+.|+.++...+...+-...
T Consensus       231 NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy--------------~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~  296 (564)
T KOG1174|consen  231 NEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPD--------------NVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV  296 (564)
T ss_pred             cHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChh--------------hhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh
Confidence            4555666666666666666666666666553311              11111111122345566665555555542222


Q ss_pred             CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 036107          209 SLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIV  288 (441)
Q Consensus       209 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~l  288 (441)
                      .-+...|-.-.......++++.|+.+-++-.+.. +.+...|-.=-..+...|+.++|.=.|+..+... +-+...|..|
T Consensus       297 ~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La-p~rL~~Y~GL  374 (564)
T KOG1174|consen  297 KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIALERHTQAVIAFRTAQMLA-PYRLEIYRGL  374 (564)
T ss_pred             hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhccchHHHHHHHHHHHhcc-hhhHHHHHHH
Confidence            2233334333344445556666666666655421 1122233222244556666777766666655431 1255667777


Q ss_pred             HHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCccchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCH
Q 036107          289 MHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDC  368 (441)
Q Consensus       289 l~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~  368 (441)
                      +++|...|++.+|.-.-+...+. +.-+..+...             +.+.+...--.+ -++|.+++++-.  .+.|+.
T Consensus       375 ~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL-------------~g~~V~~~dp~~-rEKAKkf~ek~L--~~~P~Y  437 (564)
T KOG1174|consen  375 FHSYLAQKRFKEANALANWTIRL-FQNSARSLTL-------------FGTLVLFPDPRM-REKAKKFAEKSL--KINPIY  437 (564)
T ss_pred             HHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhh-------------hcceeeccCchh-HHHHHHHHHhhh--ccCCcc
Confidence            77777777776665444332221 0001111000             000000000011 256666665543  235655


Q ss_pred             H-HHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHH
Q 036107          369 E-THARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEKKSLGNAKERIDELLTHA  435 (441)
Q Consensus       369 ~-t~~~li~~~~~~g~~~~a~~~~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~  435 (441)
                      . ..+.+...|...|..+++..   ++++-  ....||....+.|-+.+...+.+++|.+-|..-.+.
T Consensus       438 ~~AV~~~AEL~~~Eg~~~D~i~---LLe~~--L~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~  500 (564)
T KOG1174|consen  438 TPAVNLIAELCQVEGPTKDIIK---LLEKH--LIIFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQ  500 (564)
T ss_pred             HHHHHHHHHHHHhhCccchHHH---HHHHH--HhhccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence            3 45555667777788888755   45552  245788888888888888888888887777655443

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=98.04  E-value=0.00095  Score=65.22  Aligned_cols=189  Identities=9%  Similarity=0.017  Sum_probs=83.8

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHhhhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCC
Q 036107          183 VLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKD  262 (441)
Q Consensus       183 ~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~  262 (441)
                      -+|..|+..|+..+|..+..+.-+ -+||...|..+.+......-+++|.++++.-..+       .--.+-.-..+.++
T Consensus       429 ~vi~CY~~lg~~~kaeei~~q~le-k~~d~~lyc~LGDv~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~  500 (777)
T KOG1128|consen  429 PVILCYLLLGQHGKAEEINRQELE-KDPDPRLYCLLGDVLHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKD  500 (777)
T ss_pred             HHHHHHHHhcccchHHHHHHHHhc-CCCcchhHHHhhhhccChHHHHHHHHHhhhhhHH-------HHHhhccccccchh
Confidence            344455555555555544433311 2445555555555444444455555555443221       00000000112445


Q ss_pred             HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCccchHHHHHHH
Q 036107          263 FRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISS  342 (441)
Q Consensus       263 ~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~~~li~~  342 (441)
                      ++++.+.|+.-.+... ....+|-.+-.+..+.++++.|.+.|..-...  .||..               ..||.+-.+
T Consensus       501 fs~~~~hle~sl~~np-lq~~~wf~~G~~ALqlek~q~av~aF~rcvtL--~Pd~~---------------eaWnNls~a  562 (777)
T KOG1128|consen  501 FSEADKHLERSLEINP-LQLGTWFGLGCAALQLEKEQAAVKAFHRCVTL--EPDNA---------------EAWNNLSTA  562 (777)
T ss_pred             HHHHHHHHHHHhhcCc-cchhHHHhccHHHHHHhhhHHHHHHHHHHhhc--CCCch---------------hhhhhhhHH
Confidence            5555555554333211 12344545555555555555555555554442  33332               235555555


Q ss_pred             HHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHHH
Q 036107          343 ACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREML  398 (441)
Q Consensus       343 ~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~~~~m~  398 (441)
                      |.+.|+-.+|...+++..... .-+...|...+-.-.+.|.+++|.+++..+..|.
T Consensus       563 yi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rll~~~  617 (777)
T KOG1128|consen  563 YIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLR  617 (777)
T ss_pred             HHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHHHHhh
Confidence            555555555555555554433 2222333344444445555555555444444443

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.04  E-value=0.00046  Score=59.34  Aligned_cols=122  Identities=16%  Similarity=0.120  Sum_probs=55.6

Q ss_pred             HHHHHhcCCHHHHHHHHHHhhhCCCCcHHHHHHHHHHHHh----cCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhc
Q 036107          185 MDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCK----TRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCRE  260 (441)
Q Consensus       185 i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~  260 (441)
                      +..+.+..+++.|......|.+.  -+..|.+-|-.++.+    .+.+.+|.-+|++|.++ ..|+.-+.+-...++...
T Consensus       144 VqI~lk~~r~d~A~~~lk~mq~i--ded~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~  220 (299)
T KOG3081|consen  144 VQILLKMHRFDLAEKELKKMQQI--DEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQL  220 (299)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcc--chHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHh
Confidence            33444455555555555555331  222333333333332    23455555555555442 345555555555555555


Q ss_pred             CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH-HHHHHHHHhh
Q 036107          261 KDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYE-ALKVYEKMKS  310 (441)
Q Consensus       261 g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~-a~~~~~~m~~  310 (441)
                      |++++|..++++.....-+ +..|...+|.+-...|...+ ..+...+++.
T Consensus       221 ~~~eeAe~lL~eaL~kd~~-dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~  270 (299)
T KOG3081|consen  221 GRYEEAESLLEEALDKDAK-DPETLANLIVLALHLGKDAEVTERNLSQLKL  270 (299)
T ss_pred             cCHHHHHHHHHHHHhccCC-CHHHHHHHHHHHHHhCCChHHHHHHHHHHHh
Confidence            5555555555555444322 34444444444444443322 3334444443

>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=98.03  E-value=8.1e-05  Score=70.09  Aligned_cols=125  Identities=12%  Similarity=0.088  Sum_probs=107.5

Q ss_pred             CCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHH
Q 036107          241 HGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEK--GCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTS  318 (441)
Q Consensus       241 ~g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~--g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~  318 (441)
                      .+.+.+......+++.+....+++.+..++-..+..  ....-..|..++|+.|.+.|..+++..++..=...|+.||..
T Consensus        60 ~~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~  139 (429)
T PF10037_consen   60 RKKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNF  139 (429)
T ss_pred             cCCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChh
Confidence            355667888899999999999999999999998876  333334566799999999999999999999999999999998


Q ss_pred             HHHHHHHHHHhcCccchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 036107          319 FYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHK  381 (441)
Q Consensus       319 ~~~~li~~~~~~g~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~  381 (441)
                      +                +|.+|..+.+.|++..|.++..+|..++.-.+..|+..-+.+|.+.
T Consensus       140 s----------------~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~  186 (429)
T PF10037_consen  140 S----------------FNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY  186 (429)
T ss_pred             h----------------HHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence            7                7888888888888899999999999888888888888888888776

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=98.02  E-value=0.0077  Score=62.16  Aligned_cols=235  Identities=11%  Similarity=0.094  Sum_probs=153.2

Q ss_pred             CCCCC-HHHHHHHHHHHHcCCChhHHHHHHHHHHHhcCCCccHHHHHHHHhhc----CHHHHHHHHHHHHhcCCHHHHHH
Q 036107          125 GYMHT-PETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRL----DTRAMSVLMDTLVKRNSVAHAYK  199 (441)
Q Consensus       125 g~~p~-~~~y~~li~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~----~~~~~~~li~~~~~~g~~~~a~~  199 (441)
                      .+.|+ ...|..|+..+-..+++++|.++.+.-.+..+..+..-.+...+..-    +......++.......++.-...
T Consensus        25 ~~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv~~l~~~~~~~~~~~ve~  104 (906)
T PRK14720         25 NYSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLLNLIDSFSQNLKWAIVEH  104 (906)
T ss_pred             cCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhhhhhhhcccccchhHHHH
Confidence            44454 56888888888888999999999887766554444333332221110    11111133333333444433333


Q ss_pred             HHHHhhhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 036107          200 VFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCK  279 (441)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~  279 (441)
                      +...+.. ..-+...+-.+..+|-+.|+.++|..+|+++.+.. +-|+.+.|.+-..|+.. ++++|.+++.+..+.   
T Consensus       105 ~~~~i~~-~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~---  178 (906)
T PRK14720        105 ICDKILL-YGENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYLKKAIYR---  178 (906)
T ss_pred             HHHHHHh-hhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH---
Confidence            3333322 22333567778888889999999999999999876 44788899999999998 999999999887665   


Q ss_pred             CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhc-C--cc-chHHHHHHHHHhcCChhHHHHH
Q 036107          280 PSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKA-V--RF-LIYNTMISSACVRSEEGNALKL  355 (441)
Q Consensus       280 p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~-g--~~-~~~~~li~~~~~~g~~~~a~~~  355 (441)
                                  +...+++.++.++|..+.+.... +...+-.++...... |  +. .++-.+-..|-..+++++++.+
T Consensus       179 ------------~i~~kq~~~~~e~W~k~~~~~~~-d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~i  245 (906)
T PRK14720        179 ------------FIKKKQYVGIEEIWSKLVHYNSD-DFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYI  245 (906)
T ss_pred             ------------HHhhhcchHHHHHHHHHHhcCcc-cchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHH
Confidence                        66677888888888888876432 122222222222111 1  11 5577777888889999999999


Q ss_pred             HHHHHHcCCCCCHHHHHHHHHHHH
Q 036107          356 RQKIEEDSCKPDCETHARSLKMCC  379 (441)
Q Consensus       356 ~~~m~~~g~~p~~~t~~~li~~~~  379 (441)
                      |+...+.. .-|.....-++.+|.
T Consensus       246 LK~iL~~~-~~n~~a~~~l~~~y~  268 (906)
T PRK14720        246 LKKILEHD-NKNNKAREELIRFYK  268 (906)
T ss_pred             HHHHHhcC-CcchhhHHHHHHHHH
Confidence            99988654 336667777888776

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=98.02  E-value=0.00098  Score=57.33  Aligned_cols=161  Identities=9%  Similarity=-0.016  Sum_probs=121.3

Q ss_pred             HHHHHHHHcCCChhHHHHHHHHHHHhcCCCccHHHHHHHHhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcHH
Q 036107          134 NAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQ  213 (441)
Q Consensus       134 ~~li~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~  213 (441)
                      ...-..+.-.|+-+....+........   +.           |....+.......+.|++..|...|.+....-++|..
T Consensus        70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~---~~-----------d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~  135 (257)
T COG5010          70 AKLATALYLRGDADSSLAVLQKSAIAY---PK-----------DRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWE  135 (257)
T ss_pred             HHHHHHHHhcccccchHHHHhhhhccC---cc-----------cHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChh
Confidence            444455555666666666655543311   11           6667777888888999999999999988777788999


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 036107          214 IFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALE  293 (441)
Q Consensus       214 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~  293 (441)
                      .|+.+--+|-+.|++++|..-|.+..+--. -+...+|.+.-.+.-.|+++.|..++......+.. |...-..+.-...
T Consensus       136 ~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~-~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~a-d~~v~~NLAl~~~  213 (257)
T COG5010         136 AWNLLGAALDQLGRFDEARRAYRQALELAP-NEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAA-DSRVRQNLALVVG  213 (257)
T ss_pred             hhhHHHHHHHHccChhHHHHHHHHHHHhcc-CCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCC-chHHHHHHHHHHh
Confidence            999999999999999999999888887421 24566777877888889999999999888776544 6666777777888


Q ss_pred             hcCCHHHHHHHHHHHhh
Q 036107          294 KAKQIYEALKVYEKMKS  310 (441)
Q Consensus       294 ~~~~~~~a~~~~~~m~~  310 (441)
                      ..|++++|+++-..-..
T Consensus       214 ~~g~~~~A~~i~~~e~~  230 (257)
T COG5010         214 LQGDFREAEDIAVQELL  230 (257)
T ss_pred             hcCChHHHHhhcccccc
Confidence            89999999887765443

>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.01  E-value=0.013  Score=59.77  Aligned_cols=313  Identities=11%  Similarity=0.034  Sum_probs=202.3

Q ss_pred             CccchhccCCCCCCCCcccccchhhHHHhhhhchhhHHHHHhhhcCchhhHHHHHHHHHhcCCChHHHHHHHhhhhhHhh
Q 036107           41 GLPSWLKFFDTQSPDEDFVIPSLASWVESLKLNEQSRISSHALSEDHETDVDKVSEILRKRYPSPDKVVEALKCFCFTWA  120 (441)
Q Consensus        41 ~l~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  120 (441)
                      ++.+++.+...+.-+     -.-..|...+-.++|.+|+......+      ...++|+.-   -+.++.|.+.-   ..
T Consensus      1038 rVm~YI~rLdnyDa~-----~ia~iai~~~LyEEAF~ifkkf~~n~------~A~~VLie~---i~~ldRA~efA---e~ 1100 (1666)
T KOG0985|consen 1038 RVMEYINRLDNYDAP-----DIAEIAIENQLYEEAFAIFKKFDMNV------SAIQVLIEN---IGSLDRAYEFA---ER 1100 (1666)
T ss_pred             HHHHHHHHhccCCch-----hHHHHHhhhhHHHHHHHHHHHhcccH------HHHHHHHHH---hhhHHHHHHHH---Hh
Confidence            355555555443211     22333445555667777766333222      334445432   34455554422   11


Q ss_pred             hhcCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHhcCCCccHHHHHHHHhhcCHHHHHHHHHHHHhcCCHHHHHHH
Q 036107          121 KTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKV  200 (441)
Q Consensus       121 ~~~~g~~p~~~~y~~li~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~  200 (441)
                      -      -.+..|..+-.+-.+.|...+|++-|-+.   +                |+..|.-++....+.|.+|+..+.
T Consensus      1101 ~------n~p~vWsqlakAQL~~~~v~dAieSyika---d----------------Dps~y~eVi~~a~~~~~~edLv~y 1155 (1666)
T KOG0985|consen 1101 C------NEPAVWSQLAKAQLQGGLVKDAIESYIKA---D----------------DPSNYLEVIDVASRTGKYEDLVKY 1155 (1666)
T ss_pred             h------CChHHHHHHHHHHHhcCchHHHHHHHHhc---C----------------CcHHHHHHHHHHHhcCcHHHHHHH
Confidence            1      14677888888888888888887765432   3                889999999999999999999998


Q ss_pred             HHHhhh-CCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 036107          201 FLKFKD-CISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCK  279 (441)
Q Consensus       201 ~~~~~~-~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~  279 (441)
                      +...++ .-.|..  =+.||-+|++.+++.+.+++..       -||......+-+-|...|.++.|.-+|...      
T Consensus      1156 L~MaRkk~~E~~i--d~eLi~AyAkt~rl~elE~fi~-------gpN~A~i~~vGdrcf~~~~y~aAkl~y~~v------ 1220 (1666)
T KOG0985|consen 1156 LLMARKKVREPYI--DSELIFAYAKTNRLTELEEFIA-------GPNVANIQQVGDRCFEEKMYEAAKLLYSNV------ 1220 (1666)
T ss_pred             HHHHHHhhcCccc--hHHHHHHHHHhchHHHHHHHhc-------CCCchhHHHHhHHHhhhhhhHHHHHHHHHh------
Confidence            877654 333443  4679999999999988766542       388888888999999999999998887643      


Q ss_pred             CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCcc--------------chHHHHHHHHHh
Q 036107          280 PSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRF--------------LIYNTMISSACV  345 (441)
Q Consensus       280 p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~--------------~~~~~li~~~~~  345 (441)
                         .-|..|...+...|++..|.+.-+...      ++.||..+-.+|...+++              .-..-+|.-|-.
T Consensus      1221 ---SN~a~La~TLV~LgeyQ~AVD~aRKAn------s~ktWK~VcfaCvd~~EFrlAQiCGL~iivhadeLeeli~~Yq~ 1291 (1666)
T KOG0985|consen 1221 ---SNFAKLASTLVYLGEYQGAVDAARKAN------STKTWKEVCFACVDKEEFRLAQICGLNIIVHADELEELIEYYQD 1291 (1666)
T ss_pred             ---hhHHHHHHHHHHHHHHHHHHHHhhhcc------chhHHHHHHHHHhchhhhhHHHhcCceEEEehHhHHHHHHHHHh
Confidence               457777777888888888765544322      556777777777776665              345668889999


Q ss_pred             cCChhHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCccH
Q 036107          346 RSEEGNALKLRQKIEEDSCK-PDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEKKSLGNA  424 (441)
Q Consensus       346 ~g~~~~a~~~~~~m~~~g~~-p~~~t~~~li~~~~~~g~~~~a~~~~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~  424 (441)
                      .|.+++.+.+++.-.  |++ .....|+.|.-.|++- ++++..+-+++|-.         ....-.+++++..+..|.+
T Consensus      1292 rGyFeElIsl~Ea~L--GLERAHMgmfTELaiLYsky-kp~km~EHl~LFws---------RvNipKviRA~eqahlW~E 1359 (1666)
T KOG0985|consen 1292 RGYFEELISLLEAGL--GLERAHMGMFTELAILYSKY-KPEKMMEHLKLFWS---------RVNIPKVIRAAEQAHLWSE 1359 (1666)
T ss_pred             cCcHHHHHHHHHhhh--chhHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHH---------hcchHHHHHHHHHHHHHHH
Confidence            999999888877643  332 3344667666666654 34554444444433         1223345556655555555


Q ss_pred             HHHHHHH
Q 036107          425 KERIDEL  431 (441)
Q Consensus       425 a~~~~~~  431 (441)
                      ..-++..
T Consensus      1360 lvfLY~~ 1366 (1666)
T KOG0985|consen 1360 LVFLYDK 1366 (1666)
T ss_pred             HHHHHHh
Confidence            5554443

>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses

Probab=97.95  E-value=6.6e-05  Score=62.81  Aligned_cols=101  Identities=17%  Similarity=0.212  Sum_probs=66.3

Q ss_pred             CHHHHHHHHHHHHhc-----CCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCcc---chHHHHHHHHHhcCChhHH
Q 036107          281 SVITCTIVMHALEKA-----KQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRF---LIYNTMISSACVRSEEGNA  352 (441)
Q Consensus       281 ~~~~~~~ll~~~~~~-----~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~---~~~~~li~~~~~~g~~~~a  352 (441)
                      |..+|..+++.|.+.     |.++-....+..|.+.|+.-|..+|+.|++.+=+ |..   ..+-++..-|-  .+.+-|
T Consensus        46 ~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fvp~n~fQ~~F~hyp--~Qq~c~  122 (228)
T PF06239_consen   46 DKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFVPRNFFQAEFMHYP--RQQECA  122 (228)
T ss_pred             cHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcccccHHHHHhccCc--HHHHHH
Confidence            555555555555432     4555555566666666666666666666666665 333   11222222222  234679


Q ss_pred             HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCh
Q 036107          353 LKLRQKIEEDSCKPDCETHARSLKMCCHKKRM  384 (441)
Q Consensus       353 ~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~  384 (441)
                      ++++++|+..|+.||..|+..++..+++.+..
T Consensus       123 i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~p  154 (228)
T PF06239_consen  123 IDLLEQMENNGVMPDKETEQMLLNIFGRKSHP  154 (228)
T ss_pred             HHHHHHHHHcCCCCcHHHHHHHHHHhccccHH
Confidence            99999999999999999999999999887763

ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].

>KOG3616 consensus Selective LIM binding factor [Transcription]

Probab=97.95  E-value=0.0022  Score=62.79  Aligned_cols=185  Identities=14%  Similarity=0.127  Sum_probs=124.9

Q ss_pred             HHHHHHcCCChhHHHHHHHHHHHhcCCCccHHHHHHHHhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcHHHH
Q 036107          136 MVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIF  215 (441)
Q Consensus       136 li~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~  215 (441)
                      .|.+-....+|.+|+.+++.++... .              -..-|..+...|+..|+++.|+++|.+-.        .+
T Consensus       738 aieaai~akew~kai~ildniqdqk-~--------------~s~yy~~iadhyan~~dfe~ae~lf~e~~--------~~  794 (1636)
T KOG3616|consen  738 AIEAAIGAKEWKKAISILDNIQDQK-T--------------ASGYYGEIADHYANKGDFEIAEELFTEAD--------LF  794 (1636)
T ss_pred             HHHHHhhhhhhhhhHhHHHHhhhhc-c--------------ccccchHHHHHhccchhHHHHHHHHHhcc--------hh
Confidence            3445556778889999998887743 1              23456778899999999999999996653        37


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 036107          216 DVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKA  295 (441)
Q Consensus       216 ~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~  295 (441)
                      +--|.+|.+.|+|+.|.++-++..  |.......|-+--.-.-++|++.+|.+++-.+.+    |+     ..|..|-+.
T Consensus       795 ~dai~my~k~~kw~da~kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti~~----p~-----~aiqmydk~  863 (1636)
T KOG3616|consen  795 KDAIDMYGKAGKWEDAFKLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITIGE----PD-----KAIQMYDKH  863 (1636)
T ss_pred             HHHHHHHhccccHHHHHHHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEccC----ch-----HHHHHHHhh
Confidence            778999999999999999977664  4445667777777777889999999888765533    33     345677788


Q ss_pred             CCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCcc----------chHHHHHHHHHhcCChhHHHHHHH
Q 036107          296 KQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRF----------LIYNTMISSACVRSEEGNALKLRQ  357 (441)
Q Consensus       296 ~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~----------~~~~~li~~~~~~g~~~~a~~~~~  357 (441)
                      |..++..++.+.--..-+..   |-..+-.-|-..|+.          .-|.+-++.|-..+-+++|.++-+
T Consensus       864 ~~~ddmirlv~k~h~d~l~d---t~~~f~~e~e~~g~lkaae~~flea~d~kaavnmyk~s~lw~dayriak  932 (1636)
T KOG3616|consen  864 GLDDDMIRLVEKHHGDHLHD---THKHFAKELEAEGDLKAAEEHFLEAGDFKAAVNMYKASELWEDAYRIAK  932 (1636)
T ss_pred             CcchHHHHHHHHhChhhhhH---HHHHHHHHHHhccChhHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHh
Confidence            88777777665432211111   111222222222222          227777777777777777766543

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=97.93  E-value=0.0068  Score=56.84  Aligned_cols=151  Identities=11%  Similarity=0.043  Sum_probs=81.6

Q ss_pred             HhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHH
Q 036107          223 CKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPS-VITCTIVMHALEKAKQIYEA  301 (441)
Q Consensus       223 ~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~a  301 (441)
                      ...|.+++|+..++.+... .+-|+.-+......+.+.++.++|.+.++.+...  .|+ ....-.+-+++.+.|++.+|
T Consensus       317 ~~~~~~d~A~~~l~~L~~~-~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all~~g~~~ea  393 (484)
T COG4783         317 YLAGQYDEALKLLQPLIAA-QPDNPYYLELAGDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALLKGGKPQEA  393 (484)
T ss_pred             HHhcccchHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHhcCChHHH
Confidence            3456666666666665543 2233444445555666666666666666666553  233 34444555666666666666


Q ss_pred             HHHHHHHhhCCCCCCHHHHHHHHHHHHhcCcc-chHHHHHHHHHhcCChhHHHHHHHHHHHcC--CCCCHHHHHHHHHH
Q 036107          302 LKVYEKMKSDDCLTDTSFYSSLIFILSKAVRF-LIYNTMISSACVRSEEGNALKLRQKIEEDS--CKPDCETHARSLKM  377 (441)
Q Consensus       302 ~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~-~~~~~li~~~~~~g~~~~a~~~~~~m~~~g--~~p~~~t~~~li~~  377 (441)
                      ..+++...... +-|...|..|-.+|...|+. ..--+--.+|...|+++.|+..+....+..  -.|+..-+...|..
T Consensus       394 i~~L~~~~~~~-p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~~~G~~~~A~~~l~~A~~~~~~~~~~~aR~dari~~  471 (484)
T COG4783         394 IRILNRYLFND-PEDPNGWDLLAQAYAELGNRAEALLARAEGYALAGRLEQAIIFLMRASQQVKLGFPDWARADARIDQ  471 (484)
T ss_pred             HHHHHHHhhcC-CCCchHHHHHHHHHHHhCchHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhccCCcHHHHHHHHHHHH
Confidence            66666655432 33444544444444444444 223333455566777777777776665432  23343344444443

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.93  E-value=0.0073  Score=54.27  Aligned_cols=191  Identities=9%  Similarity=0.073  Sum_probs=104.8

Q ss_pred             HHHHHHhcCCHHHHHHHHHHhhhCCCCcHHHHHHHHHH-HH----hcCCHHHHHHHHHHHhhCCCCCCH-hhHHHHHHHH
Q 036107          184 LMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHG-WC----KTRKSDYAQKAMKEMFQHGFSPDG-VSYTCFIEHY  257 (441)
Q Consensus       184 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~-~~----~~~~~~~a~~~~~~m~~~g~~p~~-~~~~~li~~~  257 (441)
                      |+--|.+.+++.+|..+...+.. ..|-....-.++.+ +.    ....+.-|.+.|+-.-+.+..-|+ .--.++-+++
T Consensus       291 L~iYyL~q~dVqeA~~L~Kdl~P-ttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~f  369 (557)
T KOG3785|consen  291 LIIYYLNQNDVQEAISLCKDLDP-TTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYF  369 (557)
T ss_pred             heeeecccccHHHHHHHHhhcCC-CChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHH
Confidence            34445566666666666655531 12222222222221 11    112345566666555444443333 2334455555


Q ss_pred             HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCccchHH
Q 036107          258 CREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYN  337 (441)
Q Consensus       258 ~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~~  337 (441)
                      .-..++++++-.++.++.-=..-|..- -.+.++++..|.+.+|+++|-......++ |..+|               ..
T Consensus       370 FL~~qFddVl~YlnSi~sYF~NdD~Fn-~N~AQAk~atgny~eaEelf~~is~~~ik-n~~~Y---------------~s  432 (557)
T KOG3785|consen  370 FLSFQFDDVLTYLNSIESYFTNDDDFN-LNLAQAKLATGNYVEAEELFIRISGPEIK-NKILY---------------KS  432 (557)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCcchhh-hHHHHHHHHhcChHHHHHHHhhhcChhhh-hhHHH---------------HH
Confidence            556667777777766655433223333 34677888889999999999877655444 33332               33


Q ss_pred             HHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHH-HHHHhcCChhhHHHHHHHHH
Q 036107          338 TMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSL-KMCCHKKRMKDGMLVLNLMR  395 (441)
Q Consensus       338 ~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li-~~~~~~g~~~~a~~~~~~~~  395 (441)
                      .+.++|.++++++.|++++-++..   ..+..+...+| .-|-+.+++--|.+.|+.++
T Consensus       433 ~LArCyi~nkkP~lAW~~~lk~~t---~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE  488 (557)
T KOG3785|consen  433 MLARCYIRNKKPQLAWDMMLKTNT---PSERFSLLQLIANDCYKANEFYYAAKAFDELE  488 (557)
T ss_pred             HHHHHHHhcCCchHHHHHHHhcCC---chhHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence            455778888888888777666542   22334444444 46667777776666555433

>PLN02789 farnesyltranstransferase

Probab=97.90  E-value=0.019  Score=52.79  Aligned_cols=231  Identities=8%  Similarity=-0.074  Sum_probs=150.2

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcHHHHHHHHHHHHhcC-CHHHHHHHHHHHhhCCCCCCHhhHHHHHHHH
Q 036107          179 RAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTR-KSDYAQKAMKEMFQHGFSPDGVSYTCFIEHY  257 (441)
Q Consensus       179 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~-~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~  257 (441)
                      .++..+-..+...++.++|+.+.+.+-...+-+..+|+.--..+.+.| ++++++..++++.+... -+..+|+..-..+
T Consensus        38 ~a~~~~ra~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~np-knyqaW~~R~~~l  116 (320)
T PLN02789         38 EAMDYFRAVYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNP-KNYQIWHHRRWLA  116 (320)
T ss_pred             HHHHHHHHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCC-cchHHhHHHHHHH
Confidence            344455555666788999999998875544455556666555666666 68999999999987543 3556677665555


Q ss_pred             HhcCC--HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCccch
Q 036107          258 CREKD--FRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLI  335 (441)
Q Consensus       258 ~~~g~--~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~  335 (441)
                      .+.|.  .++++.+++.+.+...+ |..+|+...-++.+.|+++++.+.++++.+.+... ...                
T Consensus       117 ~~l~~~~~~~el~~~~kal~~dpk-Ny~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N-~sA----------------  178 (320)
T PLN02789        117 EKLGPDAANKELEFTRKILSLDAK-NYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRN-NSA----------------  178 (320)
T ss_pred             HHcCchhhHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCc-hhH----------------
Confidence            56665  36788999898877554 78999999999999999999999999999876443 334                


Q ss_pred             HHHHHHHHHhc---CC----hhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc----CChhhHHHHHHHHHHHHHCCCCC
Q 036107          336 YNTMISSACVR---SE----EGNALKLRQKIEEDSCKPDCETHARSLKMCCHK----KRMKDGMLVLNLMREMLSKGIVP  404 (441)
Q Consensus       336 ~~~li~~~~~~---g~----~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~----g~~~~a~~~~~~~~~m~~~~~~p  404 (441)
                      |+.....+.+.   |.    .++.++...+++... .-|...|+-+-..+...    +...+|.+   .+.+....+ ..
T Consensus       179 W~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~-P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~---~~~~~~~~~-~~  253 (320)
T PLN02789        179 WNQRYFVITRSPLLGGLEAMRDSELKYTIDAILAN-PRNESPWRYLRGLFKDDKEALVSDPEVSS---VCLEVLSKD-SN  253 (320)
T ss_pred             HHHHHHHHHhccccccccccHHHHHHHHHHHHHhC-CCCcCHHHHHHHHHhcCCcccccchhHHH---HHHHhhccc-CC
Confidence            33332222222   22    245666666665432 23445666666666553    23344544   444433322 33


Q ss_pred             CHHHHHHHHHHHHhcC------------------CccHHHHHHHHHH
Q 036107          405 QESTHKMLAEELEKKS------------------LGNAKERIDELLT  433 (441)
Q Consensus       405 ~~~~~~~ll~~~~~~g------------------~~~~a~~~~~~m~  433 (441)
                      +......|++.|+...                  ..++|.++++.+.
T Consensus       254 s~~al~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~l~  300 (320)
T PLN02789        254 HVFALSDLLDLLCEGLQPTAEFRDTVDTLAEELSDSTLAQAVCSELE  300 (320)
T ss_pred             cHHHHHHHHHHHHhhhccchhhhhhhhccccccccHHHHHHHHHHHH
Confidence            5667888999998643                  2366888888884

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=97.88  E-value=0.0011  Score=57.11  Aligned_cols=174  Identities=12%  Similarity=0.043  Sum_probs=130.2

Q ss_pred             hhcCchhhHHHHHHHHHhcCCChHHHHHHHhhhhhHhhhhcCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHhcCC
Q 036107           83 LSEDHETDVDKVSEILRKRYPSPDKVVEALKCFCFTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNG  162 (441)
Q Consensus        83 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~g~~p~~~~y~~li~~~~~~~~~~~a~~l~~~m~~~~~~  162 (441)
                      ......|....+ .-+...+.-.|+-+.++.+..    .......-|...-+..+....+.|++..|...|.+.....  
T Consensus        58 ~~~~~~p~d~~i-~~~a~a~~~~G~a~~~l~~~~----~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~--  130 (257)
T COG5010          58 AAVLRNPEDLSI-AKLATALYLRGDADSSLAVLQ----KSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA--  130 (257)
T ss_pred             HHHhcCcchHHH-HHHHHHHHhcccccchHHHHh----hhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC--
Confidence            334444544344 334455555565555555541    1122333456677778999999999999999999998844  


Q ss_pred             CccHHHHHHHHhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCC
Q 036107          163 YVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHG  242 (441)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g  242 (441)
                                  .+|...|+.+--+|.+.|+++.|..-|.+..+-..-+....|.|--.+.-.|+.+.|..++......+
T Consensus       131 ------------p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~  198 (257)
T COG5010         131 ------------PTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSP  198 (257)
T ss_pred             ------------CCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC
Confidence                        22899999999999999999999999988765444566678899888999999999999999988764


Q ss_pred             CCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 036107          243 FSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEK  276 (441)
Q Consensus       243 ~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~  276 (441)
                      - -|..+-..+.-.....|++++|..+...-...
T Consensus       199 ~-ad~~v~~NLAl~~~~~g~~~~A~~i~~~e~~~  231 (257)
T COG5010         199 A-ADSRVRQNLALVVGLQGDFREAEDIAVQELLS  231 (257)
T ss_pred             C-CchHHHHHHHHHHhhcCChHHHHhhccccccc
Confidence            3 36677778888899999999999988765443

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=97.86  E-value=0.0014  Score=66.39  Aligned_cols=131  Identities=9%  Similarity=0.077  Sum_probs=108.1

Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC-HhhHHHHHH
Q 036107          177 DTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPD-GVSYTCFIE  255 (441)
Q Consensus       177 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~  255 (441)
                      +...+..|-....+.|+.++|+.+++..-+-.+-+......+...+.+.+++++|+..+++.....  |+ ......+-.
T Consensus        85 ~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~--p~~~~~~~~~a~  162 (694)
T PRK15179         85 TELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGG--SSSAREILLEAK  162 (694)
T ss_pred             cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC--CCCHHHHHHHHH
Confidence            678888888888999999999999988866556677778888889999999999999999988753  44 456666777


Q ss_pred             HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 036107          256 HYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKS  310 (441)
Q Consensus       256 ~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~  310 (441)
                      ++.+.|++++|..+|++....+ +-+..++..+-.++.+.|+.++|...|+...+
T Consensus       163 ~l~~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~  216 (694)
T PRK15179        163 SWDEIGQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLD  216 (694)
T ss_pred             HHHHhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            8888999999999999998733 23478888888999999999999999988866

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=97.85  E-value=0.0014  Score=55.94  Aligned_cols=119  Identities=5%  Similarity=0.056  Sum_probs=73.9

Q ss_pred             CCChhHHHHHHHHHHHhcCCCccHHHHHHHHhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcHHHHHHHHHHH
Q 036107          143 SKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGW  222 (441)
Q Consensus       143 ~~~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~  222 (441)
                      .++.+++...+++..+..+.              |...|..+-..|...|+++.|...|++...-.+.+...+..+-.++
T Consensus        52 ~~~~~~~i~~l~~~L~~~P~--------------~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL  117 (198)
T PRK10370         52 QQTPEAQLQALQDKIRANPQ--------------NSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVL  117 (198)
T ss_pred             chhHHHHHHHHHHHHHHCCC--------------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            44555555555555553322              6667777777777777777777777766444444566666666553


Q ss_pred             -HhcCC--HHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 036107          223 -CKTRK--SDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEK  276 (441)
Q Consensus       223 -~~~~~--~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~  276 (441)
                       ...|+  .++|.+++++..+... -+...+..+-..+.+.|++++|...++.+.+.
T Consensus       118 ~~~~g~~~~~~A~~~l~~al~~dP-~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l  173 (198)
T PRK10370        118 YYQAGQHMTPQTREMIDKALALDA-NEVTALMLLASDAFMQADYAQAIELWQKVLDL  173 (198)
T ss_pred             HHhcCCCCcHHHHHHHHHHHHhCC-CChhHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence             45555  3677777777766432 14556666666677777777777777777664

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=97.83  E-value=0.0029  Score=64.29  Aligned_cols=149  Identities=11%  Similarity=0.079  Sum_probs=124.2

Q ss_pred             CCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHhcCCCccHHHHHHHHhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 036107          125 GYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKF  204 (441)
Q Consensus       125 g~~p~~~~y~~li~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~  204 (441)
                      .+..+...+-.|-.+..+.|++++|..+++...+..|.              +......+...+.+.+++++|+...++.
T Consensus        81 ~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd--------------~~~a~~~~a~~L~~~~~~eeA~~~~~~~  146 (694)
T PRK15179         81 RYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPD--------------SSEAFILMLRGVKRQQGIEAGRAEIELY  146 (694)
T ss_pred             hccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCC--------------cHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence            34457889999999999999999999999999986533              5677788889999999999999999998


Q ss_pred             hhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH
Q 036107          205 KDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVIT  284 (441)
Q Consensus       205 ~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~  284 (441)
                      -..-+-+......+-.++.+.|++++|..+|++....+ +-+..++..+-.++-+.|+.++|...|+...+.- .|....
T Consensus       147 l~~~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~-~~~~~~  224 (694)
T PRK15179        147 FSGGSSSAREILLEAKSWDEIGQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLDAI-GDGARK  224 (694)
T ss_pred             hhcCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh-CcchHH
Confidence            66666777778888899999999999999999999743 2347889999999999999999999999987652 234455


Q ss_pred             HHHHH
Q 036107          285 CTIVM  289 (441)
Q Consensus       285 ~~~ll  289 (441)
                      |+..+
T Consensus       225 ~~~~~  229 (694)
T PRK15179        225 LTRRL  229 (694)
T ss_pred             HHHHH
Confidence            65554

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=97.83  E-value=0.025  Score=52.01  Aligned_cols=286  Identities=13%  Similarity=0.018  Sum_probs=176.0

Q ss_pred             hhhHHHhhhhchhhH--HHHHhhhcCchhhHHHHHHHHHhcCCChHHHHHHHhhhhhHhhhhcCCCCCCH----HHHHHH
Q 036107           63 LASWVESLKLNEQSR--ISSHALSEDHETDVDKVSEILRKRYPSPDKVVEALKCFCFTWAKTQTGYMHTP----ETYNAM  136 (441)
Q Consensus        63 l~~~~~~~~~~~~~~--i~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~g~~p~~----~~y~~l  136 (441)
                      +.+.++....+.+..  ..-.+.+...-++...+...+.+.+...|+-.+|.-.|+...     -+.|+.    ..|..+
T Consensus       201 ika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~-----~~dpy~i~~MD~Ya~L  275 (564)
T KOG1174|consen  201 IKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTL-----CANPDNVEAMDLYAVL  275 (564)
T ss_pred             HHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHh-----hCChhhhhhHHHHHHH
Confidence            556655544443333  333333334444444888999999999999999998885222     223332    245444


Q ss_pred             HHHHHcCCChhHHHHHHHHHHHhcCCCccHHHHHHHHhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcHHHHH
Q 036107          137 VEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFD  216 (441)
Q Consensus       137 i~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~  216 (441)
                      +   .+.|+.+....+....-... .             .+...|-.-....-...+++.|+.+-++--+-.+.+...|-
T Consensus       276 L---~~eg~~e~~~~L~~~Lf~~~-~-------------~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~ali  338 (564)
T KOG1174|consen  276 L---GQEGGCEQDSALMDYLFAKV-K-------------YTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRNHEALI  338 (564)
T ss_pred             H---HhccCHhhHHHHHHHHHhhh-h-------------cchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcccchHHH
Confidence            3   45566666666555554422 0             12222222233444567888888777665322122222222


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHhhCCCCC-CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH-HHHH-
Q 036107          217 VLIHGWCKTRKSDYAQKAMKEMFQHGFSP-DGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVM-HALE-  293 (441)
Q Consensus       217 ~li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll-~~~~-  293 (441)
                      .=-+.+...++.++|.--|......  .| +..+|.-|+..|...|.+.+|..+-++.... ++-+..+.+.+- ..|. 
T Consensus       339 lKG~lL~~~~R~~~A~IaFR~Aq~L--ap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~  415 (564)
T KOG1174|consen  339 LKGRLLIALERHTQAVIAFRTAQML--APYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFP  415 (564)
T ss_pred             hccHHHHhccchHHHHHHHHHHHhc--chhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeecc
Confidence            2224567788999999889887653  33 6789999999999999999998887775442 222444444431 2222 


Q ss_pred             hcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCccchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHH
Q 036107          294 KAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHAR  373 (441)
Q Consensus       294 ~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~  373 (441)
                      ...--++|.++++.-.+.  .|+-.               ..-+.+...+...|..++++.+++.-..  ..||....+.
T Consensus       416 dp~~rEKAKkf~ek~L~~--~P~Y~---------------~AV~~~AEL~~~Eg~~~D~i~LLe~~L~--~~~D~~LH~~  476 (564)
T KOG1174|consen  416 DPRMREKAKKFAEKSLKI--NPIYT---------------PAVNLIAELCQVEGPTKDIIKLLEKHLI--IFPDVNLHNH  476 (564)
T ss_pred             CchhHHHHHHHHHhhhcc--CCccH---------------HHHHHHHHHHHhhCccchHHHHHHHHHh--hccccHHHHH
Confidence            222346777777765543  33321               2256677778888889999999988664  3788888888


Q ss_pred             HHHHHHhcCChhhHHHHHH
Q 036107          374 SLKMCCHKKRMKDGMLVLN  392 (441)
Q Consensus       374 li~~~~~~g~~~~a~~~~~  392 (441)
                      |-+.+...+.++++...|.
T Consensus       477 Lgd~~~A~Ne~Q~am~~y~  495 (564)
T KOG1174|consen  477 LGDIMRAQNEPQKAMEYYY  495 (564)
T ss_pred             HHHHHHHhhhHHHHHHHHH
Confidence            8888888888888866444

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=97.82  E-value=0.00072  Score=66.01  Aligned_cols=193  Identities=18%  Similarity=0.102  Sum_probs=143.3

Q ss_pred             chhhHHHHHHHHHhcCCChHHHHHHHhhhhhHhhhhcCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHhcCCCccH
Q 036107           87 HETDVDKVSEILRKRYPSPDKVVEALKCFCFTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSL  166 (441)
Q Consensus        87 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~g~~p~~~~y~~li~~~~~~~~~~~a~~l~~~m~~~~~~~~~~  166 (441)
                      ..|- ..+...+...+.+.|-..+|+..|+            ....|--+|.+|+..|+..+|.++..+-.+..+     
T Consensus       394 lpp~-Wq~q~~laell~slGitksAl~I~E------------rlemw~~vi~CY~~lg~~~kaeei~~q~lek~~-----  455 (777)
T KOG1128|consen  394 LPPI-WQLQRLLAELLLSLGITKSALVIFE------------RLEMWDPVILCYLLLGQHGKAEEINRQELEKDP-----  455 (777)
T ss_pred             CCCc-chHHHHHHHHHHHcchHHHHHHHHH------------hHHHHHHHHHHHHHhcccchHHHHHHHHhcCCC-----
Confidence            3444 3677778888889999999999884            457788899999999999999998887766443     


Q ss_pred             HHHHHHHhhcCHHHHHHHHHHHHhc----------------------------CCHHHHHHHHHHhhhCCCCcHHHHHHH
Q 036107          167 AAMSTVMRRLDTRAMSVLMDTLVKR----------------------------NSVAHAYKVFLKFKDCISLSSQIFDVL  218 (441)
Q Consensus       167 ~~~~~~~~~~~~~~~~~li~~~~~~----------------------------g~~~~a~~~~~~~~~~~~~~~~~~~~l  218 (441)
                                |+.-|..+.+...+.                            ++++++.+.|+.--.-.+....+|-.+
T Consensus       456 ----------d~~lyc~LGDv~~d~s~yEkawElsn~~sarA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~  525 (777)
T KOG1128|consen  456 ----------DPRLYCLLGDVLHDPSLYEKAWELSNYISARAQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGL  525 (777)
T ss_pred             ----------cchhHHHhhhhccChHHHHHHHHHhhhhhHHHHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhc
Confidence                      334444444444333                            444555444443222123344456666


Q ss_pred             HHHHHhcCCHHHHHHHHHHHhhCCCCCC-HhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 036107          219 IHGWCKTRKSDYAQKAMKEMFQHGFSPD-GVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQ  297 (441)
Q Consensus       219 i~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~  297 (441)
                      -.+..+.+++..|.+.|..-...  .|| ...||.+-.+|.+.|+..+|...+++..+.+ .-+...|-.-+....+.|.
T Consensus       526 G~~ALqlek~q~av~aF~rcvtL--~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge  602 (777)
T KOG1128|consen  526 GCAALQLEKEQAAVKAFHRCVTL--EPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGE  602 (777)
T ss_pred             cHHHHHHhhhHHHHHHHHHHhhc--CCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhccc
Confidence            66777888999999999888763  455 5789999999999999999999999998887 4467778888888899999


Q ss_pred             HHHHHHHHHHHhh
Q 036107          298 IYEALKVYEKMKS  310 (441)
Q Consensus       298 ~~~a~~~~~~m~~  310 (441)
                      +++|.+.+.++.+
T Consensus       603 ~eda~~A~~rll~  615 (777)
T KOG1128|consen  603 FEDAIKAYHRLLD  615 (777)
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999998865

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=97.81  E-value=0.00078  Score=63.24  Aligned_cols=127  Identities=13%  Similarity=0.063  Sum_probs=81.5

Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHH
Q 036107          177 DTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEH  256 (441)
Q Consensus       177 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~  256 (441)
                      +..-...|+..+...++++.|..+|+++.... |+.  .-.+...+...++-.+|.+++++..+. .+-|......-...
T Consensus       168 ~NyLv~~Ll~~l~~t~~~~~ai~lle~L~~~~-pev--~~~LA~v~l~~~~E~~AI~ll~~aL~~-~p~d~~LL~~Qa~f  243 (395)
T PF09295_consen  168 NNYLVDTLLKYLSLTQRYDEAIELLEKLRERD-PEV--AVLLARVYLLMNEEVEAIRLLNEALKE-NPQDSELLNLQAEF  243 (395)
T ss_pred             chHHHHHHHHHHhhcccHHHHHHHHHHHHhcC-CcH--HHHHHHHHHhcCcHHHHHHHHHHHHHh-CCCCHHHHHHHHHH
Confidence            33444555666666677777777777774422 433  334666666667777777777777653 22345555555566


Q ss_pred             HHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 036107          257 YCREKDFRKVDYTLKEMQEKGCKP-SVITCTIVMHALEKAKQIYEALKVYEKMK  309 (441)
Q Consensus       257 ~~~~g~~~~a~~l~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~  309 (441)
                      +.+.++++.|+++.+++.+.  .| +-.+|..|..+|.+.|+++.|...++.+.
T Consensus       244 Ll~k~~~~lAL~iAk~av~l--sP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P  295 (395)
T PF09295_consen  244 LLSKKKYELALEIAKKAVEL--SPSEFETWYQLAECYIQLGDFENALLALNSCP  295 (395)
T ss_pred             HHhcCCHHHHHHHHHHHHHh--CchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence            77777777777777777664  23 34577777777777777777777777665

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>PRK04841 transcriptional regulator MalT; Provisional

Probab=97.80  E-value=0.067  Score=57.42  Aligned_cols=277  Identities=10%  Similarity=-0.056  Sum_probs=164.4

Q ss_pred             HHHHHHHcCCChhHHHHHHHHHHHhcCCCc--cHHHHHHHHhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCC-c
Q 036107          135 AMVEALGKSKKFGLMWELVKEIDELSNGYV--SLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISL-S  211 (441)
Q Consensus       135 ~li~~~~~~~~~~~a~~l~~~m~~~~~~~~--~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~-~  211 (441)
                      .....+...|++++|...+......-....  .....       .......+-..+...|++++|...++........ +
T Consensus       414 ~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~-------~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~  486 (903)
T PRK04841        414 LQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTL-------QAEFNALRAQVAINDGDPEEAERLAELALAELPLTW  486 (903)
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhH-------HHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCcc
Confidence            334445677899999999988765321100  00000       0111222334456789999999999876321111 1


Q ss_pred             ----HHHHHHHHHHHHhcCCHHHHHHHHHHHhhC----CC-CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHH----cCC
Q 036107          212 ----SQIFDVLIHGWCKTRKSDYAQKAMKEMFQH----GF-SPDGVSYTCFIEHYCREKDFRKVDYTLKEMQE----KGC  278 (441)
Q Consensus       212 ----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----g~-~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~----~g~  278 (441)
                          ....+.+-..+...|++++|...+++....    |- .+...++..+-..+...|++++|...+++..+    .|.
T Consensus       487 ~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~  566 (903)
T PRK04841        487 YYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHL  566 (903)
T ss_pred             HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcc
Confidence                123455666778899999999999887642    11 11123455666678889999999999888654    232


Q ss_pred             C--C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCC--CCCCHHHHHHHHHHHHhcCccchHHHHHHHHHhcCChhHHH
Q 036107          279 K--P-SVITCTIVMHALEKAKQIYEALKVYEKMKSDD--CLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNAL  353 (441)
Q Consensus       279 ~--p-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g--~~~~~~~~~~li~~~~~~g~~~~~~~li~~~~~~g~~~~a~  353 (441)
                      .  + ....+..+...+...|++++|...+.+.....  ..+....              ..+..+...+...|+.++|.
T Consensus       567 ~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~--------------~~~~~la~~~~~~G~~~~A~  632 (903)
T PRK04841        567 EQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQL--------------QCLAMLAKISLARGDLDNAR  632 (903)
T ss_pred             ccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHH--------------HHHHHHHHHHHHcCCHHHHH
Confidence            1  1 23344555566778899999999998876531  1121111              12455666778899999999


Q ss_pred             HHHHHHHHcCCC-CCHHHH-----HHHHHHHHhcCChhhHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhcCCccH
Q 036107          354 KLRQKIEEDSCK-PDCETH-----ARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQ---ESTHKMLAEELEKKSLGNA  424 (441)
Q Consensus       354 ~~~~~m~~~g~~-p~~~t~-----~~li~~~~~~g~~~~a~~~~~~~~~m~~~~~~p~---~~~~~~ll~~~~~~g~~~~  424 (441)
                      +.+.+.....-. .....+     ...+..+...|+.+.|.+.   +.+.........   ...+..+..++...|+.++
T Consensus       633 ~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~---l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~  709 (903)
T PRK04841        633 RYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANW---LRQAPKPEFANNHFLQGQWRNIARAQILLGQFDE  709 (903)
T ss_pred             HHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHH---HHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHH
Confidence            999887542111 111111     1122344557888888763   333211111111   1124566777888999999


Q ss_pred             HHHHHHHHHHH
Q 036107          425 KERIDELLTHA  435 (441)
Q Consensus       425 a~~~~~~m~~~  435 (441)
                      |...++.....
T Consensus       710 A~~~l~~al~~  720 (903)
T PRK04841        710 AEIILEELNEN  720 (903)
T ss_pred             HHHHHHHHHHH
Confidence            99998886554

>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses

Probab=97.79  E-value=0.00034  Score=58.61  Aligned_cols=102  Identities=13%  Similarity=0.184  Sum_probs=72.6

Q ss_pred             CCcHHHHHHHHHHHHh-----cCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhc----------------CCHHHHH
Q 036107          209 SLSSQIFDVLIHGWCK-----TRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCRE----------------KDFRKVD  267 (441)
Q Consensus       209 ~~~~~~~~~li~~~~~-----~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~----------------g~~~~a~  267 (441)
                      ..+..+|..+|..|.+     .|..+-....+..|.+-|+..|..+|+.||+.+=+.                .+-+-|+
T Consensus        44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i  123 (228)
T PF06239_consen   44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAI  123 (228)
T ss_pred             cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHH
Confidence            3566667777777754     366777777778888888888888888888776542                1345688


Q ss_pred             HHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH-HHHHHHHHHHhh
Q 036107          268 YTLKEMQEKGCKPSVITCTIVMHALEKAKQI-YEALKVYEKMKS  310 (441)
Q Consensus       268 ~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~-~~a~~~~~~m~~  310 (441)
                      +++++|...|+.||..|+..|++.+++.+.. .+..++.-.|.+
T Consensus       124 ~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~p~~K~~rmmYWmpk  167 (228)
T PF06239_consen  124 DLLEQMENNGVMPDKETEQMLLNIFGRKSHPMKKYRRMMYWMPK  167 (228)
T ss_pred             HHHHHHHHcCCCCcHHHHHHHHHHhccccHHHHHHHHHHHHHHH
Confidence            9999999999999999999999998776654 234444444433

ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].

>KOG2047 consensus mRNA splicing factor [RNA processing and modification]

Probab=97.77  E-value=0.045  Score=53.28  Aligned_cols=305  Identities=13%  Similarity=0.137  Sum_probs=183.4

Q ss_pred             HHHHHHHhcCCChHHHHHHHhhhhhHhhhhcCCCCC--C-HHHHHHHHHHHHcCCChhHHHHHHHHHHHhcCCCc-----
Q 036107           93 KVSEILRKRYPSPDKVVEALKCFCFTWAKTQTGYMH--T-PETYNAMVEALGKSKKFGLMWELVKEIDELSNGYV-----  164 (441)
Q Consensus        93 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~g~~p--~-~~~y~~li~~~~~~~~~~~a~~l~~~m~~~~~~~~-----  164 (441)
                      .+.-.+.+.|-+.|+++.|+.+|+   ......++-  + ..+|-.--..=.+..+++.|+++.+..........     
T Consensus       388 ~Lw~~faklYe~~~~l~~aRvife---ka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd  464 (835)
T KOG2047|consen  388 TLWVEFAKLYENNGDLDDARVIFE---KATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYD  464 (835)
T ss_pred             hHHHHHHHHHHhcCcHHHHHHHHH---HhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhc
Confidence            566677788999999999999884   222222211  1 12343333444455678888887776654321100     


Q ss_pred             -cHHHHHHHHhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhh--CCCCcHHH-HHHHHHHHHhcCCHHHHHHHHHHHhh
Q 036107          165 -SLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKD--CISLSSQI-FDVLIHGWCKTRKSDYAQKAMKEMFQ  240 (441)
Q Consensus       165 -~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~-~~~li~~~~~~~~~~~a~~~~~~m~~  240 (441)
                       +..+-..+.+  +...|+..++.--..|-++....+|+++-+  -..|.... |..+   +-...-++++.++|++-..
T Consensus       465 ~~~pvQ~rlhr--SlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~NyAmf---LEeh~yfeesFk~YErgI~  539 (835)
T KOG2047|consen  465 NSEPVQARLHR--SLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAMF---LEEHKYFEESFKAYERGIS  539 (835)
T ss_pred             CCCcHHHHHHH--hHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHH---HHhhHHHHHHHHHHHcCCc
Confidence             0111111111  567778888887888899999999988843  23333221 2222   2334568889999887655


Q ss_pred             CCCCCCH-hhHHHHHHHHHh---cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH--HhcCCHHHHHHHHHHHhhCCCC
Q 036107          241 HGFSPDG-VSYTCFIEHYCR---EKDFRKVDYTLKEMQEKGCKPSVITCTIVMHAL--EKAKQIYEALKVYEKMKSDDCL  314 (441)
Q Consensus       241 ~g~~p~~-~~~~~li~~~~~---~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~--~~~~~~~~a~~~~~~m~~~g~~  314 (441)
                      .=--|++ ..|+.-+.-+.+   ....+.|..+|++..+ |++|...-+--|+-+-  -+.|....|..++++.-. +++
T Consensus       540 LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~-~v~  617 (835)
T KOG2047|consen  540 LFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATS-AVK  617 (835)
T ss_pred             cCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh-cCC
Confidence            3222444 467776665554   2358999999999998 7776644333333221  234777888888888543 344


Q ss_pred             CCHHHHHHHHHHHHhcCccchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHH---HHHHhcCChhhHHHHH
Q 036107          315 TDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSL---KMCCHKKRMKDGMLVL  391 (441)
Q Consensus       315 ~~~~~~~~li~~~~~~g~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li---~~~~~~g~~~~a~~~~  391 (441)
                      +....              ..||..|.--+..=.+...-.+|++.++.  -||...-...|   ..=++.|..++|+.++
T Consensus       618 ~a~~l--------------~myni~I~kaae~yGv~~TR~iYekaIe~--Lp~~~~r~mclrFAdlEtklGEidRARaIy  681 (835)
T KOG2047|consen  618 EAQRL--------------DMYNIYIKKAAEIYGVPRTREIYEKAIES--LPDSKAREMCLRFADLETKLGEIDRARAIY  681 (835)
T ss_pred             HHHHH--------------HHHHHHHHHHHHHhCCcccHHHHHHHHHh--CChHHHHHHHHHHHHHhhhhhhHHHHHHHH
Confidence            43322              33777776665555555666777777654  66665443333   3445789999999987


Q ss_pred             HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCccHH
Q 036107          392 NLMREMLSKGIVPQESTHKMLAEELEKKSLGNAK  425 (441)
Q Consensus       392 ~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a  425 (441)
                      ..-.+..  .-+.+..-|.+.=.-=.+.|+-+..
T Consensus       682 a~~sq~~--dPr~~~~fW~twk~FEvrHGnedT~  713 (835)
T KOG2047|consen  682 AHGSQIC--DPRVTTEFWDTWKEFEVRHGNEDTY  713 (835)
T ss_pred             HhhhhcC--CCcCChHHHHHHHHHHHhcCCHHHH
Confidence            7665532  3444566677766666888884433

>KOG3616 consensus Selective LIM binding factor [Transcription]

Probab=97.77  E-value=0.0048  Score=60.52  Aligned_cols=138  Identities=12%  Similarity=0.083  Sum_probs=95.7

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCc
Q 036107          253 FIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVR  332 (441)
Q Consensus       253 li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~  332 (441)
                      .|.+....+.|.+|+.+++.+++....  ..-|..+.+.|+..|+++.|+++|.+.-.                      
T Consensus       738 aieaai~akew~kai~ildniqdqk~~--s~yy~~iadhyan~~dfe~ae~lf~e~~~----------------------  793 (1636)
T KOG3616|consen  738 AIEAAIGAKEWKKAISILDNIQDQKTA--SGYYGEIADHYANKGDFEIAEELFTEADL----------------------  793 (1636)
T ss_pred             HHHHHhhhhhhhhhHhHHHHhhhhccc--cccchHHHHHhccchhHHHHHHHHHhcch----------------------
Confidence            344555667788888888877766432  33466677888888888888888764321                      


Q ss_pred             cchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 036107          333 FLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKML  412 (441)
Q Consensus       333 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~~~~m~~~~~~p~~~~~~~l  412 (441)
                         ++-.|..|.+.|+++.|.++-.+..  |-......|-.-..-+-+.|++.+|++++-.+       -.|+.     -
T Consensus       794 ---~~dai~my~k~~kw~da~kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti-------~~p~~-----a  856 (1636)
T KOG3616|consen  794 ---FKDAIDMYGKAGKWEDAFKLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITI-------GEPDK-----A  856 (1636)
T ss_pred             ---hHHHHHHHhccccHHHHHHHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEc-------cCchH-----H
Confidence               7777888888888899988876653  44555566666666677788888887743211       13443     3


Q ss_pred             HHHHHhcCCccHHHHHHHH
Q 036107          413 AEELEKKSLGNAKERIDEL  431 (441)
Q Consensus       413 l~~~~~~g~~~~a~~~~~~  431 (441)
                      |+.|-+.|..++..++.+.
T Consensus       857 iqmydk~~~~ddmirlv~k  875 (1636)
T KOG3616|consen  857 IQMYDKHGLDDDMIRLVEK  875 (1636)
T ss_pred             HHHHHhhCcchHHHHHHHH
Confidence            5789999999998888765

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=97.77  E-value=0.029  Score=52.78  Aligned_cols=217  Identities=10%  Similarity=0.016  Sum_probs=143.0

Q ss_pred             HHHHHHHcCC-ChhHHHHHHHHHHH--hcCCCccHHHHHHHHhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhh---CC
Q 036107          135 AMVEALGKSK-KFGLMWELVKEIDE--LSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKD---CI  208 (441)
Q Consensus       135 ~li~~~~~~~-~~~~a~~l~~~m~~--~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~---~~  208 (441)
                      .-|..+.+.| +.....++|+++..  .....++.-                ++..=.-..++.++...-+.++.   .-
T Consensus       207 ~Gi~~L~raGydp~gM~~ff~rl~~~~~~~~~~p~y----------------l~THPlp~~RIa~lr~ra~q~p~~~~~d  270 (484)
T COG4783         207 IGITTLVRAGYDPQGMPEFFERLADQLRYGGQPPEY----------------LLTHPLPEERIADLRNRAEQSPPYNKLD  270 (484)
T ss_pred             HHHHHHHHcCCCchhHHHHHHHHHHHHhcCCCCChH----------------HhcCCCchhHHHHHHHHHHhCCCCCCCC
Confidence            3455566777 56667788888874  221222211                11111123456666666677743   34


Q ss_pred             CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 036107          209 SLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIV  288 (441)
Q Consensus       209 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~l  288 (441)
                      .|+...+...+.+......-..+..++.+-.+.  .-...-|..-+. +...|++++|+..++.+... .+-|..-+...
T Consensus       271 ~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~--~~~aa~YG~A~~-~~~~~~~d~A~~~l~~L~~~-~P~N~~~~~~~  346 (484)
T COG4783         271 SPDFQLARARIRAKYEALPNQQAADLLAKRSKR--GGLAAQYGRALQ-TYLAGQYDEALKLLQPLIAA-QPDNPYYLELA  346 (484)
T ss_pred             CccHHHHHHHHHHHhccccccchHHHHHHHhCc--cchHHHHHHHHH-HHHhcccchHHHHHHHHHHh-CCCCHHHHHHH
Confidence            566666777777655544333333333333221  123344555554 45678999999999998775 33466666777


Q ss_pred             HHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCccchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCH
Q 036107          289 MHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDC  368 (441)
Q Consensus       289 l~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~  368 (441)
                      .+.+.+.++..+|.+.++.+...  .|+..               ..+-.+-.+|.+.|++.+|+.+++.-.... .-|.
T Consensus       347 ~~i~~~~nk~~~A~e~~~kal~l--~P~~~---------------~l~~~~a~all~~g~~~eai~~L~~~~~~~-p~dp  408 (484)
T COG4783         347 GDILLEANKAKEAIERLKKALAL--DPNSP---------------LLQLNLAQALLKGGKPQEAIRILNRYLFND-PEDP  408 (484)
T ss_pred             HHHHHHcCChHHHHHHHHHHHhc--CCCcc---------------HHHHHHHHHHHhcCChHHHHHHHHHHhhcC-CCCc
Confidence            78999999999999999999885  44432               226677788999999999999999976542 5567


Q ss_pred             HHHHHHHHHHHhcCChhhHHH
Q 036107          369 ETHARSLKMCCHKKRMKDGML  389 (441)
Q Consensus       369 ~t~~~li~~~~~~g~~~~a~~  389 (441)
                      ..|..|-.+|...|+..++..
T Consensus       409 ~~w~~LAqay~~~g~~~~a~~  429 (484)
T COG4783         409 NGWDLLAQAYAELGNRAEALL  429 (484)
T ss_pred             hHHHHHHHHHHHhCchHHHHH
Confidence            789999999999999888755

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=97.74  E-value=0.0038  Score=50.30  Aligned_cols=99  Identities=7%  Similarity=-0.120  Sum_probs=63.4

Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHH
Q 036107          177 DTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEH  256 (441)
Q Consensus       177 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~  256 (441)
                      ++..+..+-..+...|++++|...|+..-..-+.+...|..+-.++.+.|++++|...|+...... +.+...+..+-.+
T Consensus        23 ~p~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~-p~~~~a~~~lg~~  101 (144)
T PRK15359         23 DPETVYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD-ASHPEPVYQTGVC  101 (144)
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHH
Confidence            333344455566667777777777766644445566666667777777777777777777776542 2355666666666


Q ss_pred             HHhcCCHHHHHHHHHHHHHc
Q 036107          257 YCREKDFRKVDYTLKEMQEK  276 (441)
Q Consensus       257 ~~~~g~~~~a~~l~~~m~~~  276 (441)
                      +.+.|++++|...|+...+.
T Consensus       102 l~~~g~~~eAi~~~~~Al~~  121 (144)
T PRK15359        102 LKMMGEPGLAREAFQTAIKM  121 (144)
T ss_pred             HHHcCCHHHHHHHHHHHHHh
Confidence            77777777777777776553

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=97.73  E-value=0.0022  Score=54.68  Aligned_cols=120  Identities=8%  Similarity=0.064  Sum_probs=99.0

Q ss_pred             cCCHHHHHHHHHHhhhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHH-HhcCC--HHHHH
Q 036107          191 RNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHY-CREKD--FRKVD  267 (441)
Q Consensus       191 ~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~-~~~g~--~~~a~  267 (441)
                      .++.+++...++..-...+.+...|..+-..|...|++++|...|++..+.. +-+...+..+-.++ ...|+  .++|.
T Consensus        52 ~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~A~  130 (198)
T PRK10370         52 QQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQTR  130 (198)
T ss_pred             chhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHHHH
Confidence            5667777777777655557788899999999999999999999999998854 23566777777764 67777  59999


Q ss_pred             HHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCC
Q 036107          268 YTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDD  312 (441)
Q Consensus       268 ~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g  312 (441)
                      +++++..+.+.. +...+..+-..+.+.|++++|...|+.+.+..
T Consensus       131 ~~l~~al~~dP~-~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~  174 (198)
T PRK10370        131 EMIDKALALDAN-EVTALMLLASDAFMQADYAQAIELWQKVLDLN  174 (198)
T ss_pred             HHHHHHHHhCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence            999999887544 67888889999999999999999999998864

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=97.73  E-value=0.0014  Score=52.78  Aligned_cols=106  Identities=13%  Similarity=-0.067  Sum_probs=88.3

Q ss_pred             HHHHHHHHHHHHcCCChhHHHHHHHHHHHhcCCCccHHHHHHHHhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCC
Q 036107          130 PETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCIS  209 (441)
Q Consensus       130 ~~~y~~li~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~  209 (441)
                      +..+...-..+...|++++|.+.|+......+.              +...+..+-.++.+.|++++|...|+..-...+
T Consensus        24 p~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~--------------~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p   89 (144)
T PRK15359         24 PETVYASGYASWQEGDYSRAVIDFSWLVMAQPW--------------SWRAHIALAGTWMMLKEYTTAINFYGHALMLDA   89 (144)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC--------------cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence            334556677888999999999999998875422              778899999999999999999999999866666


Q ss_pred             CcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHH
Q 036107          210 LSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYT  251 (441)
Q Consensus       210 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~  251 (441)
                      .+...+..+-.++.+.|++++|...|+...+.  .|+...|.
T Consensus        90 ~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~--~p~~~~~~  129 (144)
T PRK15359         90 SHPEPVYQTGVCLKMMGEPGLAREAFQTAIKM--SYADASWS  129 (144)
T ss_pred             CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHH
Confidence            78888999999999999999999999999874  46554444

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=97.73  E-value=0.029  Score=56.08  Aligned_cols=178  Identities=17%  Similarity=0.123  Sum_probs=110.2

Q ss_pred             HHHhhhhchhhHHHHHhhhcCchhhHHHHHHHHHhcCCChHHHHHHHhhhhhHhhhhcCCCCCCHHHHHHHHHHHHcCCC
Q 036107           66 WVESLKLNEQSRISSHALSEDHETDVDKVSEILRKRYPSPDKVVEALKCFCFTWAKTQTGYMHTPETYNAMVEALGKSKK  145 (441)
Q Consensus        66 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~g~~p~~~~y~~li~~~~~~~~  145 (441)
                      +.+.|-+++|..+++...+          +.+|.+.|...|.+.+|.++-   ....+..++   .||..--.-+-..++
T Consensus       810 AieLgMlEeA~~lYr~ckR----------~DLlNKlyQs~g~w~eA~eiA---E~~DRiHLr---~Tyy~yA~~Lear~D  873 (1416)
T KOG3617|consen  810 AIELGMLEEALILYRQCKR----------YDLLNKLYQSQGMWSEAFEIA---ETKDRIHLR---NTYYNYAKYLEARRD  873 (1416)
T ss_pred             HHHHhhHHHHHHHHHHHHH----------HHHHHHHHHhcccHHHHHHHH---hhccceehh---hhHHHHHHHHHhhcc
Confidence            3455666667666664332          334556778888898888776   333333333   355555555566678


Q ss_pred             hhHHHHHHHHHHHhcCC-----CccHHHHHHHHhh-cCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcHHHHHHHH
Q 036107          146 FGLMWELVKEIDELSNG-----YVSLAAMSTVMRR-LDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLI  219 (441)
Q Consensus       146 ~~~a~~l~~~m~~~~~~-----~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li  219 (441)
                      .+.|++.|++-....-.     ......+...+.+ -|...|.-.-..+-..|+.+.|+.+|+..++        |-+++
T Consensus       874 i~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D--------~fs~V  945 (1416)
T KOG3617|consen  874 IEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD--------YFSMV  945 (1416)
T ss_pred             HHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh--------hhhhe
Confidence            88888888764321100     0011111111111 1566666666666678999999999988765        66777


Q ss_pred             HHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 036107          220 HGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEM  273 (441)
Q Consensus       220 ~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m  273 (441)
                      +..|-.|+.++|-++-++-      -|....-.+-.-|-..|++.+|...|.+.
T Consensus       946 rI~C~qGk~~kAa~iA~es------gd~AAcYhlaR~YEn~g~v~~Av~FfTrA  993 (1416)
T KOG3617|consen  946 RIKCIQGKTDKAARIAEES------GDKAACYHLARMYENDGDVVKAVKFFTRA  993 (1416)
T ss_pred             eeEeeccCchHHHHHHHhc------ccHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence            7777788888888776653      25555566667777777777777777654

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=97.70  E-value=0.0023  Score=50.87  Aligned_cols=95  Identities=15%  Similarity=0.008  Sum_probs=48.4

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHh
Q 036107          180 AMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCR  259 (441)
Q Consensus       180 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~  259 (441)
                      ....+...+...|+.++|.+.|+......+.+...+..+-..+.+.|++++|..+|++....+ +.+...+..+-..+..
T Consensus        19 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~   97 (135)
T TIGR02552        19 QIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAAECLLA   97 (135)
T ss_pred             HHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHH
Confidence            334444455555555555555555533333444555555555555555555555555554432 2233444444455555


Q ss_pred             cCCHHHHHHHHHHHHH
Q 036107          260 EKDFRKVDYTLKEMQE  275 (441)
Q Consensus       260 ~g~~~~a~~l~~~m~~  275 (441)
                      .|++++|...|+...+
T Consensus        98 ~g~~~~A~~~~~~al~  113 (135)
T TIGR02552        98 LGEPESALKALDLAIE  113 (135)
T ss_pred             cCCHHHHHHHHHHHHH
Confidence            5555555555555544

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=97.70  E-value=0.0027  Score=51.24  Aligned_cols=127  Identities=12%  Similarity=0.087  Sum_probs=59.2

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcHH---HHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCH--hhHHH
Q 036107          178 TRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQ---IFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDG--VSYTC  252 (441)
Q Consensus       178 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~--~~~~~  252 (441)
                      ...|..++..+. .++...+.+.++.+....+.+..   ..-.+-..+...|++++|...|+........|+.  ...-.
T Consensus        12 ~~~y~~~~~~~~-~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~   90 (145)
T PF09976_consen   12 SALYEQALQALQ-AGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLR   90 (145)
T ss_pred             HHHHHHHHHHHH-CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHH
Confidence            344555555542 55555555555555333233311   1112224455556666666666665554311211  12223


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 036107          253 FIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEK  307 (441)
Q Consensus       253 li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~  307 (441)
                      +-..+...|++++|+.+++......  .....+...-..+.+.|+.++|...|+.
T Consensus        91 LA~~~~~~~~~d~Al~~L~~~~~~~--~~~~~~~~~Gdi~~~~g~~~~A~~~y~~  143 (145)
T PF09976_consen   91 LARILLQQGQYDEALATLQQIPDEA--FKALAAELLGDIYLAQGDYDEARAAYQK  143 (145)
T ss_pred             HHHHHHHcCCHHHHHHHHHhccCcc--hHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence            3445555566666666654432222  1223344444555556666666555543

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.69  E-value=0.056  Score=52.06  Aligned_cols=113  Identities=15%  Similarity=0.110  Sum_probs=69.1

Q ss_pred             hhHHHhhhhchhhHHHHHhhhcCchhhHHHHHHHHHhcCCChHHHHHHHhhhhhHhhhhcCCCCCCHHHHHHH--HHHH-
Q 036107           64 ASWVESLKLNEQSRISSHALSEDHETDVDKVSEILRKRYPSPDKVVEALKCFCFTWAKTQTGYMHTPETYNAM--VEAL-  140 (441)
Q Consensus        64 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~g~~p~~~~y~~l--i~~~-  140 (441)
                      +-....++++++......+...+  |+...++..-+-+..+.+.+++|+.+.+...         -..+++..  =.+| 
T Consensus        20 n~~~~~~e~e~a~k~~~Kil~~~--pdd~~a~~cKvValIq~~ky~~ALk~ikk~~---------~~~~~~~~~fEKAYc   88 (652)
T KOG2376|consen   20 NRHGKNGEYEEAVKTANKILSIV--PDDEDAIRCKVVALIQLDKYEDALKLIKKNG---------ALLVINSFFFEKAYC   88 (652)
T ss_pred             HHhccchHHHHHHHHHHHHHhcC--CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcc---------hhhhcchhhHHHHHH
Confidence            33344456777777666666665  3333555555557788899999986653221         11222222  2334 


Q ss_pred             -HcCCChhHHHHHHHHHHHhcCCCccHHHHHHHHhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 036107          141 -GKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKF  204 (441)
Q Consensus       141 -~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~  204 (441)
                       .+.+..++|+..++.... .                |..+...--..+-+.|++++|+.+|..+
T Consensus        89 ~Yrlnk~Dealk~~~~~~~-~----------------~~~ll~L~AQvlYrl~~ydealdiY~~L  136 (652)
T KOG2376|consen   89 EYRLNKLDEALKTLKGLDR-L----------------DDKLLELRAQVLYRLERYDEALDIYQHL  136 (652)
T ss_pred             HHHcccHHHHHHHHhcccc-c----------------chHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence             356788888888873222 1                4445555556677888999999988887

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=97.68  E-value=0.0045  Score=49.98  Aligned_cols=113  Identities=12%  Similarity=0.111  Sum_probs=51.8

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCH-h---hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH--HHHHHH
Q 036107          215 FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDG-V---SYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSV--ITCTIV  288 (441)
Q Consensus       215 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~-~---~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~--~~~~~l  288 (441)
                      |..++..+. .++...+...++.+....  |+. .   ..-.+-..+...|++++|...|++..+....|+.  ...-.+
T Consensus        15 y~~~~~~~~-~~~~~~~~~~~~~l~~~~--~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~L   91 (145)
T PF09976_consen   15 YEQALQALQ-AGDPAKAEAAAEQLAKDY--PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRL   91 (145)
T ss_pred             HHHHHHHHH-CCCHHHHHHHHHHHHHHC--CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHH
Confidence            444444442 555555555555555432  111 1   1112224455556666666666665554422221  122334


Q ss_pred             HHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCc
Q 036107          289 MHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVR  332 (441)
Q Consensus       289 l~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~  332 (441)
                      ...+...|++++|...++.......  ....+...-+.|.+.|+
T Consensus        92 A~~~~~~~~~d~Al~~L~~~~~~~~--~~~~~~~~Gdi~~~~g~  133 (145)
T PF09976_consen   92 ARILLQQGQYDEALATLQQIPDEAF--KALAAELLGDIYLAQGD  133 (145)
T ss_pred             HHHHHHcCCHHHHHHHHHhccCcch--HHHHHHHHHHHHHHCCC
Confidence            4555556666666666544332222  22334444455555555

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=97.62  E-value=0.0026  Score=59.86  Aligned_cols=117  Identities=14%  Similarity=0.089  Sum_probs=94.4

Q ss_pred             cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 036107          211 SSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMH  290 (441)
Q Consensus       211 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~  290 (441)
                      +-....+|+..+...++++.|..+|+++.+..  |+  ....+...+...++-.+|.+++.+..+.. +-+......-..
T Consensus       168 ~NyLv~~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~  242 (395)
T PF09295_consen  168 NNYLVDTLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAE  242 (395)
T ss_pred             chHHHHHHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence            34455667777788899999999999999864  55  44567888888889999999999988653 336777777778


Q ss_pred             HHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCcc
Q 036107          291 ALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRF  333 (441)
Q Consensus       291 ~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~  333 (441)
                      .|.+.++++.|..+.+++.+.. +-+..+|..|..+|.+.|+.
T Consensus       243 fLl~k~~~~lAL~iAk~av~ls-P~~f~~W~~La~~Yi~~~d~  284 (395)
T PF09295_consen  243 FLLSKKKYELALEIAKKAVELS-PSEFETWYQLAECYIQLGDF  284 (395)
T ss_pred             HHHhcCCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHhcCCH
Confidence            8999999999999999999863 33455999999999999996

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=97.60  E-value=0.003  Score=50.24  Aligned_cols=107  Identities=10%  Similarity=0.007  Sum_probs=86.1

Q ss_pred             HHHHHHHHHHHHcCCChhHHHHHHHHHHHhcCCCccHHHHHHHHhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCC
Q 036107          130 PETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCIS  209 (441)
Q Consensus       130 ~~~y~~li~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~  209 (441)
                      ......+...+...|++++|.+.|+.....++.              +...+..+...+.+.|++++|...++......+
T Consensus        17 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~--------------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p   82 (135)
T TIGR02552        17 LEQIYALAYNLYQQGRYDEALKLFQLLAAYDPY--------------NSRYWLGLAACCQMLKEYEEAIDAYALAAALDP   82 (135)
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCC--------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            345666777788899999999999998875522              678888888999999999999999998855556


Q ss_pred             CcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHH
Q 036107          210 LSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTC  252 (441)
Q Consensus       210 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~  252 (441)
                      .+...+..+-..|...|++++|.+.|+...+.  .|+...+..
T Consensus        83 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~  123 (135)
T TIGR02552        83 DDPRPYFHAAECLLALGEPESALKALDLAIEI--CGENPEYSE  123 (135)
T ss_pred             CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--ccccchHHH
Confidence            67777888888999999999999999998874  355554443

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=97.57  E-value=0.02  Score=59.27  Aligned_cols=218  Identities=10%  Similarity=0.079  Sum_probs=112.2

Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhC--CCCcHHHHHHHHHHHHhcCCHHHHHHH------------------HH
Q 036107          177 DTRAMSVLMDTLVKRNSVAHAYKVFLKFKDC--ISLSSQIFDVLIHGWCKTRKSDYAQKA------------------MK  236 (441)
Q Consensus       177 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~~~~li~~~~~~~~~~~a~~~------------------~~  236 (441)
                      +...+..|+..+...+++++|.++.+.....  -.+....+..+  .+...++...+..+                  ..
T Consensus        30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~--l~~q~~~~~~~~lv~~l~~~~~~~~~~~ve~~~~  107 (906)
T PRK14720         30 KFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGI--LSLSRRPLNDSNLLNLIDSFSQNLKWAIVEHICD  107 (906)
T ss_pred             hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHH--HHHhhcchhhhhhhhhhhhcccccchhHHHHHHH
Confidence            6788889999999999999999999865332  22333333333  45555555544444                  11


Q ss_pred             HHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC
Q 036107          237 EMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTD  316 (441)
Q Consensus       237 ~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~  316 (441)
                      .|...+  -+...+-.+..+|-+.|+.+++.++++++.+.. +-|+.+.|.+-..|... ++++|.+++......-+  +
T Consensus       108 ~i~~~~--~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~~i--~  181 (906)
T PRK14720        108 KILLYG--ENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYLKKAIYRFI--K  181 (906)
T ss_pred             HHHhhh--hhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHH--h
Confidence            111110  111344455555556677777777777776665 33566666666666666 77777766666554311  0


Q ss_pred             HHHHHHHHHHHHhcCccchHHHHHHHHHhcCChhHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHH
Q 036107          317 TSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEED-SCKPDCETHARSLKMCCHKKRMKDGMLVLNLMR  395 (441)
Q Consensus       317 ~~~~~~li~~~~~~g~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~~~  395 (441)
                      ..-|+.+..         .|.-++.  ....+++.-..+.+.+... |..--..++-.+-..|...++++++..+++.+-
T Consensus       182 ~kq~~~~~e---------~W~k~~~--~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL  250 (906)
T PRK14720        182 KKQYVGIEE---------IWSKLVH--YNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKIL  250 (906)
T ss_pred             hhcchHHHH---------HHHHHHh--cCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHH
Confidence            001000000         0221111  1112223333344444322 333444455555566667777777766444433


Q ss_pred             HHHHCCCCCCHHHHHHHHHHHH
Q 036107          396 EMLSKGIVPQESTHKMLAEELE  417 (441)
Q Consensus       396 ~m~~~~~~p~~~~~~~ll~~~~  417 (441)
                      +   .. +-|.....-++..|.
T Consensus       251 ~---~~-~~n~~a~~~l~~~y~  268 (906)
T PRK14720        251 E---HD-NKNNKAREELIRFYK  268 (906)
T ss_pred             h---cC-CcchhhHHHHHHHHH
Confidence            3   21 114445556666664

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.52  E-value=0.051  Score=47.16  Aligned_cols=175  Identities=15%  Similarity=0.055  Sum_probs=89.8

Q ss_pred             HHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCC
Q 036107          233 KAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDD  312 (441)
Q Consensus       233 ~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g  312 (441)
                      ++.+.+......-+......-...|+..|++++|++.....    .  +......=+..+.+..+++-|++.++.|.+-.
T Consensus        94 ~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~----~--~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~id  167 (299)
T KOG3081|consen   94 SLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLG----E--NLEAAALNVQILLKMHRFDLAEKELKKMQQID  167 (299)
T ss_pred             HHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhcc----c--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Confidence            34444444333333233333334566777777777776651    1  22222222344556667777777777777643


Q ss_pred             CCCCHHHHHHHHHHHHhcCccchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHH
Q 036107          313 CLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLN  392 (441)
Q Consensus       313 ~~~~~~~~~~li~~~~~~g~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~  392 (441)
                         +..|.+.|-.+            .|......+++.+|.-+|++|-+ ...|+..+.+....++...|++++|..   
T Consensus       168 ---ed~tLtQLA~a------------wv~la~ggek~qdAfyifeE~s~-k~~~T~~llnG~Av~~l~~~~~eeAe~---  228 (299)
T KOG3081|consen  168 ---EDATLTQLAQA------------WVKLATGGEKIQDAFYIFEELSE-KTPPTPLLLNGQAVCHLQLGRYEEAES---  228 (299)
T ss_pred             ---hHHHHHHHHHH------------HHHHhccchhhhhHHHHHHHHhc-ccCCChHHHccHHHHHHHhcCHHHHHH---
Confidence               33343333333            22222334456777777777754 246777777777777777777777766   


Q ss_pred             HHHHHHHCCCCCCHHHHHHHHHHHHhcCCc-cHHHHHHHHHH
Q 036107          393 LMREMLSKGIVPQESTHKMLAEELEKKSLG-NAKERIDELLT  433 (441)
Q Consensus       393 ~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~-~~a~~~~~~m~  433 (441)
                      ++++...+... ++.+...++..-...|.. +-..+..+.++
T Consensus       229 lL~eaL~kd~~-dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk  269 (299)
T KOG3081|consen  229 LLEEALDKDAK-DPETLANLIVLALHLGKDAEVTERNLSQLK  269 (299)
T ss_pred             HHHHHHhccCC-CHHHHHHHHHHHHHhCCChHHHHHHHHHHH
Confidence            44444433332 233444444443444433 33344444443

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.48  E-value=0.11  Score=50.14  Aligned_cols=305  Identities=11%  Similarity=0.068  Sum_probs=156.9

Q ss_pred             hhhHHHhhhhchhhHHHHHhhhcCchhhH-HHHHHHHHhcCCChHHHHHHHhhhhhHhhhhcCCCCCC-H--HHHHHHHH
Q 036107           63 LASWVESLKLNEQSRISSHALSEDHETDV-DKVSEILRKRYPSPDKVVEALKCFCFTWAKTQTGYMHT-P--ETYNAMVE  138 (441)
Q Consensus        63 l~~~~~~~~~~~~~~i~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~g~~p~-~--~~y~~li~  138 (441)
                      -+-|-+.+++++|..|+.++.+++....- +...+++...-...+.+            +......|+ .  ..||+ -.
T Consensus       117 AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~------------~q~v~~v~e~syel~yN~-Ac  183 (652)
T KOG2376|consen  117 AQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQL------------LQSVPEVPEDSYELLYNT-AC  183 (652)
T ss_pred             HHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHH------------HHhccCCCcchHHHHHHH-HH
Confidence            44566777888888888888776643332 22223332221111111            112223332 1  23443 45


Q ss_pred             HHHcCCChhHHHHHHHHHHHhcC-----CCccHHHHHHHHhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcHH
Q 036107          139 ALGKSKKFGLMWELVKEIDELSN-----GYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQ  213 (441)
Q Consensus       139 ~~~~~~~~~~a~~l~~~m~~~~~-----~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~  213 (441)
                      .+...|++.+|+++++...+.+.     +-....-+.   ...+ .+---+.-.+-..|+.++|.+++........+|..
T Consensus       184 ~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie---~el~-~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~~~D~~  259 (652)
T KOG2376|consen  184 ILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIE---EELN-PIRVQLAYVLQLQGQTAEASSIYVDIIKRNPADEP  259 (652)
T ss_pred             HHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHH---HHHH-HHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCCch
Confidence            67788999999999999833220     000000000   0001 01112334455679999999999887444444442


Q ss_pred             H----HHHHHHHHHhcCCHH-HHHHHHHHH-----------------------------------------hhC-CCCCC
Q 036107          214 I----FDVLIHGWCKTRKSD-YAQKAMKEM-----------------------------------------FQH-GFSPD  246 (441)
Q Consensus       214 ~----~~~li~~~~~~~~~~-~a~~~~~~m-----------------------------------------~~~-g~~p~  246 (441)
                      .    -|.|+..-....-++ .+++.++..                                         .+. +..| 
T Consensus       260 ~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk~~q~r~~~a~lp~~~p-  338 (652)
T KOG2376|consen  260 SLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTNKMDQVRELSASLPGMSP-  338 (652)
T ss_pred             HHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhCCccCc-
Confidence            2    233322211111111 011111000                                         000 1112 


Q ss_pred             HhhHHHHHHHHHhcC--CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH--------HHhhCCCCCC
Q 036107          247 GVSYTCFIEHYCREK--DFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYE--------KMKSDDCLTD  316 (441)
Q Consensus       247 ~~~~~~li~~~~~~g--~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~--------~m~~~g~~~~  316 (441)
                      ...+.+++..+.+..  ...++.+++...-+....-....--.+++.....|+++.|.+++.        .+.+.+..|.
T Consensus       339 ~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P~  418 (652)
T KOG2376|consen  339 ESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLPG  418 (652)
T ss_pred             hHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccChh
Confidence            234445554444322  355666666665544322234555666777888999999999999        6666666664


Q ss_pred             HHHHHHHHHHHHhcCcc-------------------------chHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHH
Q 036107          317 TSFYSSLIFILSKAVRF-------------------------LIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETH  371 (441)
Q Consensus       317 ~~~~~~li~~~~~~g~~-------------------------~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~  371 (441)
                      .  ...++..+.+.+..                         .+|.-....-.+.|+.++|..+++++.+.. .+|..+.
T Consensus       419 ~--V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n-~~d~~~l  495 (652)
T KOG2376|consen  419 T--VGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFN-PNDTDLL  495 (652)
T ss_pred             H--HHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhC-CchHHHH
Confidence            4  44555555555544                         334444444456677777777777776543 5666777


Q ss_pred             HHHHHHHHhcCChhhHHH
Q 036107          372 ARSLKMCCHKKRMKDGML  389 (441)
Q Consensus       372 ~~li~~~~~~g~~~~a~~  389 (441)
                      ..++.+|++. +.+.|..
T Consensus       496 ~~lV~a~~~~-d~eka~~  512 (652)
T KOG2376|consen  496 VQLVTAYARL-DPEKAES  512 (652)
T ss_pred             HHHHHHHHhc-CHHHHHH
Confidence            7777777654 3444433

>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]

Probab=97.46  E-value=0.16  Score=51.42  Aligned_cols=63  Identities=10%  Similarity=0.008  Sum_probs=35.7

Q ss_pred             HHHHHHHHhcCChhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHH
Q 036107          372 ARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEKKSLGNAKERIDELLTHA  435 (441)
Q Consensus       372 ~~li~~~~~~g~~~~a~~~~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~  435 (441)
                      +.+++.|.+.++.....+.+-+++.-.. .-+-|..+--.+|+.|+-.|-+..|.++++.|.-.
T Consensus       440 ~~Lid~~rktnd~~~l~eaI~LLE~glt-~s~hnf~~KLlLiriY~~lGa~p~a~~~y~tLdIK  502 (932)
T KOG2053|consen  440 NHLIDLWRKTNDLTDLFEAITLLENGLT-KSPHNFQTKLLLIRIYSYLGAFPDAYELYKTLDIK  502 (932)
T ss_pred             HHHHHHHHhcCcHHHHHHHHHHHHHHhh-cCCccHHHHHHHHHHHHHhcCChhHHHHHHhcchH
Confidence            5677777777776654433333333111 11223345556677777777777777777766543

>KOG2047 consensus mRNA splicing factor [RNA processing and modification]

Probab=97.45  E-value=0.13  Score=50.22  Aligned_cols=172  Identities=9%  Similarity=0.047  Sum_probs=109.9

Q ss_pred             hcCCChHHHHHHHhhhhhHhhhhcCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHhcCCCccHHHHHHHHhhcCHH
Q 036107          100 KRYPSPDKVVEALKCFCFTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTR  179 (441)
Q Consensus       100 ~~~~~~g~~~~A~~~~~~~~~~~~~g~~p~~~~y~~li~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~  179 (441)
                      ....++|++...+.+|+....  ...+......|...|.-....+-++-+..+++...+.                 ++.
T Consensus       110 q~l~~Q~~iT~tR~tfdrALr--aLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~-----------------~P~  170 (835)
T KOG2047|consen  110 QFLIKQGLITRTRRTFDRALR--ALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV-----------------APE  170 (835)
T ss_pred             HHHHhcchHHHHHHHHHHHHH--hCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc-----------------CHH
Confidence            334455666666666652211  1122223456777777777777777777777776663                 455


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHhh-------hCCCCcHHHHHHHHHHHHhcCCHHH---HHHHHHHHhhCCCCCCH--
Q 036107          180 AMSVLMDTLVKRNSVAHAYKVFLKFK-------DCISLSSQIFDVLIHGWCKTRKSDY---AQKAMKEMFQHGFSPDG--  247 (441)
Q Consensus       180 ~~~~li~~~~~~g~~~~a~~~~~~~~-------~~~~~~~~~~~~li~~~~~~~~~~~---a~~~~~~m~~~g~~p~~--  247 (441)
                      .-+--|..+++.++.++|-+.+..+-       ...+.+...|.-+-+..++..+.-.   +..++..+...  -+|.  
T Consensus       171 ~~eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~r--ftDq~g  248 (835)
T KOG2047|consen  171 AREEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRR--FTDQLG  248 (835)
T ss_pred             HHHHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhccc--CcHHHH
Confidence            66777888899999999998887761       1345566677777777776654433   33344444332  3443  


Q ss_pred             hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 036107          248 VSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEK  294 (441)
Q Consensus       248 ~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~  294 (441)
                      ..|++|-+-|.+.|.+++|..+|++-...-  .+..-|+.+.++|+.
T Consensus       249 ~Lw~SLAdYYIr~g~~ekarDvyeeai~~v--~tvrDFt~ifd~Ya~  293 (835)
T KOG2047|consen  249 FLWCSLADYYIRSGLFEKARDVYEEAIQTV--MTVRDFTQIFDAYAQ  293 (835)
T ss_pred             HHHHHHHHHHHHhhhhHHHHHHHHHHHHhh--eehhhHHHHHHHHHH
Confidence            578999999999999999999999866542  244455566666553

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=97.43  E-value=0.0029  Score=57.24  Aligned_cols=132  Identities=11%  Similarity=0.094  Sum_probs=84.5

Q ss_pred             HHHHHHHHHHHcCCChhHHHHHHHHHHHhcCCCccHHHHHHHHhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCC
Q 036107          131 ETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISL  210 (441)
Q Consensus       131 ~~y~~li~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~  210 (441)
                      .+|-.+|...-+.+..+.|+.+|.+..+.+ ..           .++.....++|. +...++.+.|..+|+..-+.+..
T Consensus         2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~-----------~~~vy~~~A~~E-~~~~~d~~~A~~Ife~glk~f~~   68 (280)
T PF05843_consen    2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RC-----------TYHVYVAYALME-YYCNKDPKRARKIFERGLKKFPS   68 (280)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS------------THHHHHHHHHH-HHTCS-HHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CC-----------CHHHHHHHHHHH-HHhCCCHHHHHHHHHHHHHHCCC
Confidence            467777777777777888888888877533 11           012233333332 22245566688888877555666


Q ss_pred             cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCH---hhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 036107          211 SSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDG---VSYTCFIEHYCREKDFRKVDYTLKEMQEK  276 (441)
Q Consensus       211 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~---~~~~~li~~~~~~g~~~~a~~l~~~m~~~  276 (441)
                      +...|...+..+.+.++.+.|..+|++.... +.++.   ..|...+.-=.+.|+.+.+.++.+++.+.
T Consensus        69 ~~~~~~~Y~~~l~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~  136 (280)
T PF05843_consen   69 DPDFWLEYLDFLIKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL  136 (280)
T ss_dssp             -HHHHHHHHHHHHHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            7777888888888888888888888887765 32222   47777777777788888888887777664

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=97.41  E-value=0.0053  Score=55.61  Aligned_cols=130  Identities=11%  Similarity=0.110  Sum_probs=100.1

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHhhhC--CCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHH
Q 036107          179 RAMSVLMDTLVKRNSVAHAYKVFLKFKDC--ISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEH  256 (441)
Q Consensus       179 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~  256 (441)
                      .+|..+|...-+.+..+.|..+|.+..+.  ...+.....++|. |...++.+.|.++|+...+. +..+...|..-++-
T Consensus         2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E-~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~   79 (280)
T PF05843_consen    2 LVWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALME-YYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDF   79 (280)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHH-HHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHH-HHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHH
Confidence            47888999999999999999999998653  3444444444443 33356777899999999875 56678889999999


Q ss_pred             HHhcCCHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 036107          257 YCREKDFRKVDYTLKEMQEKGCKPS---VITCTIVMHALEKAKQIYEALKVYEKMKSD  311 (441)
Q Consensus       257 ~~~~g~~~~a~~l~~~m~~~g~~p~---~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~  311 (441)
                      +.+.++.+.|..+|++.... +.++   ...|...++-=.+.|+++.+.++.+++.+.
T Consensus        80 l~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~  136 (280)
T PF05843_consen   80 LIKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL  136 (280)
T ss_dssp             HHHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred             HHHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            99999999999999998765 3322   258999999889999999999999998874

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=97.40  E-value=0.019  Score=55.01  Aligned_cols=246  Identities=11%  Similarity=0.004  Sum_probs=168.6

Q ss_pred             ChHHHHHHHhhhhhHhhhhcCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHhcCCCccHHHHHHHHhhcCHHHHHH
Q 036107          104 SPDKVVEALKCFCFTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSV  183 (441)
Q Consensus       104 ~~g~~~~A~~~~~~~~~~~~~g~~p~~~~y~~li~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~  183 (441)
                      +.|++.+|.=+|+..-.    .-.-+...|-.|-...+.+++-..|+..+.+-.+..+.              +..+.-.
T Consensus       297 ~nG~L~~A~LafEAAVk----qdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~--------------NleaLma  358 (579)
T KOG1125|consen  297 KNGDLSEAALAFEAAVK----QDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPT--------------NLEALMA  358 (579)
T ss_pred             hcCCchHHHHHHHHHHh----hChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCc--------------cHHHHHH
Confidence            44556666655532211    11115678999999999999999999999998886533              7888889


Q ss_pred             HHHHHHhcCCHHHHHHHHHHh-hhC-----CCC---cHHHHHHHHHHHHhcCCHHHHHHHHHHHh-hCCCCCCHhhHHHH
Q 036107          184 LMDTLVKRNSVAHAYKVFLKF-KDC-----ISL---SSQIFDVLIHGWCKTRKSDYAQKAMKEMF-QHGFSPDGVSYTCF  253 (441)
Q Consensus       184 li~~~~~~g~~~~a~~~~~~~-~~~-----~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~-~~g~~p~~~~~~~l  253 (441)
                      |--.|...|.-..|+..++.. +..     ..+   +...-+.  ..+.....+....++|-++. +.+..+|..++..|
T Consensus       359 LAVSytNeg~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~L  436 (579)
T KOG1125|consen  359 LAVSYTNEGLQNQALKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGL  436 (579)
T ss_pred             HHHHHhhhhhHHHHHHHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhh
Confidence            999999999999999988764 221     000   1100000  12222334556667776665 45545677777777


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCcc
Q 036107          254 IEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRF  333 (441)
Q Consensus       254 i~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~  333 (441)
                      ---|.-.|++++|...|+...... +-|...||-|-..++...+.++|...|.+..+.  .|+-+               
T Consensus       437 GVLy~ls~efdraiDcf~~AL~v~-Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqL--qP~yV---------------  498 (579)
T KOG1125|consen  437 GVLYNLSGEFDRAVDCFEAALQVK-PNDYLLWNRLGATLANGNRSEEAISAYNRALQL--QPGYV---------------  498 (579)
T ss_pred             HHHHhcchHHHHHHHHHHHHHhcC-CchHHHHHHhhHHhcCCcccHHHHHHHHHHHhc--CCCee---------------
Confidence            777888999999999999988753 236889999999999999999999999999884  44322               


Q ss_pred             chHHHHHHHHHhcCChhHHHHHHHHH---HHcC------CCCCHHHHHHHHHHHHhcCChhhH
Q 036107          334 LIYNTMISSACVRSEEGNALKLRQKI---EEDS------CKPDCETHARSLKMCCHKKRMKDG  387 (441)
Q Consensus       334 ~~~~~li~~~~~~g~~~~a~~~~~~m---~~~g------~~p~~~t~~~li~~~~~~g~~~~a  387 (441)
                      .++-.|--+|...|.+++|.+.|-..   ...+      ..++...|..|=.++.-.++.|.+
T Consensus       499 R~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l  561 (579)
T KOG1125|consen  499 RVRYNLGISCMNLGAYKEAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLL  561 (579)
T ss_pred             eeehhhhhhhhhhhhHHHHHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHH
Confidence            22445666788899999999888654   3331      123345566665566666666644

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.38  E-value=0.076  Score=45.81  Aligned_cols=158  Identities=10%  Similarity=-0.045  Sum_probs=117.4

Q ss_pred             CCChhHHHHHHHHHHHhcCCCccHHHHHHHHhhcCH-HHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcHHHHHHHHHH
Q 036107          143 SKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDT-RAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHG  221 (441)
Q Consensus       143 ~~~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~  221 (441)
                      ..+.++..+++.++........         .+++. ..|.-++-+....|+.+.|...+++++..++-+..+--.=---
T Consensus        25 ~rnseevv~l~~~~~~~~k~~~---------~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~   95 (289)
T KOG3060|consen   25 VRNSEEVVQLGSEVLNYSKSGA---------LGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAML   95 (289)
T ss_pred             ccCHHHHHHHHHHHHHHhhhcc---------cCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHH
Confidence            3577888888888876431110         01122 4566677788899999999999999987773333322211222


Q ss_pred             HHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 036107          222 WCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEA  301 (441)
Q Consensus       222 ~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a  301 (441)
                      +--.|++++|.++|+...+.. +.|.++|-.=+...-..|+..+|++-+.+..+. ...|...|.-+-..|...|++++|
T Consensus        96 lEa~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA  173 (289)
T KOG3060|consen   96 LEATGNYKEAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKA  173 (289)
T ss_pred             HHHhhchhhHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHH
Confidence            344789999999999999876 456778877777777788878888888777665 556999999999999999999999


Q ss_pred             HHHHHHHhhC
Q 036107          302 LKVYEKMKSD  311 (441)
Q Consensus       302 ~~~~~~m~~~  311 (441)
                      .-.++++.-.
T Consensus       174 ~fClEE~ll~  183 (289)
T KOG3060|consen  174 AFCLEELLLI  183 (289)
T ss_pred             HHHHHHHHHc
Confidence            9999999875

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=97.36  E-value=0.0045  Score=44.88  Aligned_cols=92  Identities=16%  Similarity=0.092  Sum_probs=45.5

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 036107          217 VLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAK  296 (441)
Q Consensus       217 ~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~  296 (441)
                      .+...+...|++++|..++++..+.. +.+...+..+...+...|++++|.+.++...+... .+..++..+...+...|
T Consensus         5 ~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~   82 (100)
T cd00189           5 NLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELDP-DNAKAYYNLGLAYYKLG   82 (100)
T ss_pred             HHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-cchhHHHHHHHHHHHHH
Confidence            34444455555555555555554431 11224444455555555555555555555544322 12244555555555555


Q ss_pred             CHHHHHHHHHHHhh
Q 036107          297 QIYEALKVYEKMKS  310 (441)
Q Consensus       297 ~~~~a~~~~~~m~~  310 (441)
                      ++++|...+....+
T Consensus        83 ~~~~a~~~~~~~~~   96 (100)
T cd00189          83 KYEEALEAYEKALE   96 (100)
T ss_pred             hHHHHHHHHHHHHc
Confidence            55655555555443

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=97.27  E-value=0.013  Score=45.04  Aligned_cols=94  Identities=15%  Similarity=0.020  Sum_probs=40.1

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHhhhCCCC---cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC--CCHhhHHHHHHHH
Q 036107          183 VLMDTLVKRNSVAHAYKVFLKFKDCISL---SSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFS--PDGVSYTCFIEHY  257 (441)
Q Consensus       183 ~li~~~~~~g~~~~a~~~~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~--p~~~~~~~li~~~  257 (441)
                      .+...+.+.|++++|.+.|..+....+.   ....+..+...+.+.|+++.|.+.|+......-.  .....+..+..++
T Consensus         7 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~   86 (119)
T TIGR02795         7 DAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMSL   86 (119)
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHHH
Confidence            3334444455555555555544221111   1223333444455555555555555554432100  0122344444444


Q ss_pred             HhcCCHHHHHHHHHHHHHc
Q 036107          258 CREKDFRKVDYTLKEMQEK  276 (441)
Q Consensus       258 ~~~g~~~~a~~l~~~m~~~  276 (441)
                      .+.|+.++|...++++.+.
T Consensus        87 ~~~~~~~~A~~~~~~~~~~  105 (119)
T TIGR02795        87 QELGDKEKAKATLQQVIKR  105 (119)
T ss_pred             HHhCChHHHHHHHHHHHHH
Confidence            4455555555555554443

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=97.26  E-value=0.0053  Score=44.47  Aligned_cols=91  Identities=12%  Similarity=0.095  Sum_probs=48.2

Q ss_pred             HHHHHHhcCCHHHHHHHHHHhhhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCH
Q 036107          184 LMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDF  263 (441)
Q Consensus       184 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~  263 (441)
                      +...+...|++++|...++......+.+...+..+...+...+++++|.+.|+...... +.+..++..+...+...|++
T Consensus         6 ~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~   84 (100)
T cd00189           6 LGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYYKLGKY   84 (100)
T ss_pred             HHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHHHHhH
Confidence            34444555666666666655533223333445555555555666666666666555432 12234555555566666666


Q ss_pred             HHHHHHHHHHHH
Q 036107          264 RKVDYTLKEMQE  275 (441)
Q Consensus       264 ~~a~~l~~~m~~  275 (441)
                      ++|...+....+
T Consensus        85 ~~a~~~~~~~~~   96 (100)
T cd00189          85 EEALEAYEKALE   96 (100)
T ss_pred             HHHHHHHHHHHc
Confidence            666666655543

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=97.25  E-value=0.014  Score=44.91  Aligned_cols=101  Identities=12%  Similarity=0.036  Sum_probs=77.8

Q ss_pred             HHHHHHHHHHHcCCChhHHHHHHHHHHHhcCCCccHHHHHHHHhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhC---
Q 036107          131 ETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDC---  207 (441)
Q Consensus       131 ~~y~~li~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~---  207 (441)
                      .++-.....+.+.|++++|.+.|+++....+..+.           ....+..+...+.+.|+++.|...|+.+...   
T Consensus         3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-----------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~   71 (119)
T TIGR02795         3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTY-----------APNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPK   71 (119)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccc-----------cHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCC
Confidence            34566677788899999999999999875433211           3456677888999999999999999987432   


Q ss_pred             CCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCC
Q 036107          208 ISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHG  242 (441)
Q Consensus       208 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g  242 (441)
                      .......+..+..++.+.|+.++|.+.+++..+..
T Consensus        72 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~  106 (119)
T TIGR02795        72 SPKAPDALLKLGMSLQELGDKEKAKATLQQVIKRY  106 (119)
T ss_pred             CCcccHHHHHHHHHHHHhCChHHHHHHHHHHHHHC
Confidence            22234567777888999999999999999998763

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=97.19  E-value=0.098  Score=53.59  Aligned_cols=179  Identities=12%  Similarity=0.104  Sum_probs=105.6

Q ss_pred             hHHHHHhhhcCchhhHHHHHHHHHhcCCChHHHHHHHhhhhhHhhhhcCCCCC-CHHHHHHHHHHHHcCCChhHHHHHHH
Q 036107           76 SRISSHALSEDHETDVDKVSEILRKRYPSPDKVVEALKCFCFTWAKTQTGYMH-TPETYNAMVEALGKSKKFGLMWELVK  154 (441)
Q Consensus        76 ~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~g~~p-~~~~y~~li~~~~~~~~~~~a~~l~~  154 (441)
                      ..++..+......+....++..|...|....+...|.+.|+-..+     +.| |...+......|++..+++.|.++.-
T Consensus       476 ~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFe-----LDatdaeaaaa~adtyae~~~we~a~~I~l  550 (1238)
T KOG1127|consen  476 LALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFE-----LDATDAEAAAASADTYAEESTWEEAFEICL  550 (1238)
T ss_pred             HHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhc-----CCchhhhhHHHHHHHhhccccHHHHHHHHH
Confidence            334444444444455555677777777777788888888853322     222 46678888889999999999888844


Q ss_pred             HHHHhcCCCccHHHHHHHHhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcHHHHHHHHHHHHhcCCHHHHHHH
Q 036107          155 EIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKA  234 (441)
Q Consensus       155 ~m~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~  234 (441)
                      ...+..+...            -...|..+--.|.+.++...|..-|+..-+--+.|...|..+..+|..+|++..|.++
T Consensus       551 ~~~qka~a~~------------~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKv  618 (1238)
T KOG1127|consen  551 RAAQKAPAFA------------CKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKV  618 (1238)
T ss_pred             HHhhhchHHH------------HHhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHh
Confidence            4333221110            1122222333455666777776666655433455666777778888888888888888


Q ss_pred             HHHHhhCCCCCCHhhHHHHHHH--HHhcCCHHHHHHHHHHHH
Q 036107          235 MKEMFQHGFSPDGVSYTCFIEH--YCREKDFRKVDYTLKEMQ  274 (441)
Q Consensus       235 ~~~m~~~g~~p~~~~~~~li~~--~~~~g~~~~a~~l~~~m~  274 (441)
                      |.+....  .|+ .+|...-.+  -+..|++.++...+....
T Consensus       619 F~kAs~L--rP~-s~y~~fk~A~~ecd~GkYkeald~l~~ii  657 (1238)
T KOG1127|consen  619 FTKASLL--RPL-SKYGRFKEAVMECDNGKYKEALDALGLII  657 (1238)
T ss_pred             hhhhHhc--CcH-hHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence            8766542  232 233332222  234566777766666553

>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]

Probab=97.18  E-value=0.24  Score=47.53  Aligned_cols=175  Identities=13%  Similarity=0.085  Sum_probs=131.4

Q ss_pred             HHHHHHHHHHhhh--CCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC-CHhhHHHHHHHHHhcCCHHHHHHHH
Q 036107          194 VAHAYKVFLKFKD--CISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSP-DGVSYTCFIEHYCREKDFRKVDYTL  270 (441)
Q Consensus       194 ~~~a~~~~~~~~~--~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~a~~l~  270 (441)
                      .+...+.++++..  ...|+. +|..+|+.--+...++.|..+|.+.++.+..+ ++.+++++|.-+|. ++..-|.++|
T Consensus       347 ~~~~~~~~~~ll~~~~~~~tL-v~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cs-kD~~~AfrIF  424 (656)
T KOG1914|consen  347 EKKVHEIYNKLLKIEDIDLTL-VYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCS-KDKETAFRIF  424 (656)
T ss_pred             hhhhHHHHHHHHhhhccCCce-ehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhc-CChhHHHHHH
Confidence            4455555665532  445554 68888998889999999999999999988777 78899999998775 6889999999


Q ss_pred             HH-HHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCccchHHHHHHHHHhcCCh
Q 036107          271 KE-MQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEE  349 (441)
Q Consensus       271 ~~-m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~~~li~~~~~~g~~  349 (441)
                      +- |++.|-.  ..--..-+.-+...++-..+..+|++...+++.|+...              ..|..+|.-=...|++
T Consensus       425 eLGLkkf~d~--p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~--------------~Iw~r~l~yES~vGdL  488 (656)
T KOG1914|consen  425 ELGLKKFGDS--PEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSK--------------EIWDRMLEYESNVGDL  488 (656)
T ss_pred             HHHHHhcCCC--hHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhH--------------HHHHHHHHHHHhcccH
Confidence            87 4444432  33345667778889999999999999999987776654              5599999999999999


Q ss_pred             hHHHHHHHHHHHc---CCCCCHHHHHHHHHHHHhcCChhh
Q 036107          350 GNALKLRQKIEED---SCKPDCETHARSLKMCCHKKRMKD  386 (441)
Q Consensus       350 ~~a~~~~~~m~~~---g~~p~~~t~~~li~~~~~~g~~~~  386 (441)
                      ..+.++-+++...   ...|...+-..+++-|.-.+.+..
T Consensus       489 ~si~~lekR~~~af~~~qe~~~~~~~~~v~RY~~~d~~~c  528 (656)
T KOG1914|consen  489 NSILKLEKRRFTAFPADQEYEGNETALFVDRYGILDLYPC  528 (656)
T ss_pred             HHHHHHHHHHHHhcchhhcCCCChHHHHHHHHhhcccccc
Confidence            9999998876532   134444455667777776666544

>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]

Probab=97.10  E-value=0.41  Score=48.69  Aligned_cols=225  Identities=14%  Similarity=0.121  Sum_probs=149.9

Q ss_pred             HHcCCChhHHHHHHHHHHHhcCCCccHHHHHHHHhhcCHHHHHHHHHHH--HhcCCHHHHHHHHHHhhhCCCCcHHHHHH
Q 036107          140 LGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTL--VKRNSVAHAYKVFLKFKDCISLSSQIFDV  217 (441)
Q Consensus       140 ~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~--~~~g~~~~a~~~~~~~~~~~~~~~~~~~~  217 (441)
                      ....+++..|.....+..+..|.                ..|..++.++  .+.|+.++|..+++....--.-|..|...
T Consensus        19 ~ld~~qfkkal~~~~kllkk~Pn----------------~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~   82 (932)
T KOG2053|consen   19 LLDSSQFKKALAKLGKLLKKHPN----------------ALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQF   82 (932)
T ss_pred             HhhhHHHHHHHHHHHHHHHHCCC----------------cHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHH
Confidence            34678899999999988875522                3445555555  57899999999998885433348889999


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 036107          218 LIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQ  297 (441)
Q Consensus       218 li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~  297 (441)
                      +-.+|-..++.++|..+|+...+.  -|+..-...+..+|++.+++.+-.+.--+|-+ ..+-+.+.|-++++.+...-.
T Consensus        83 l~~~y~d~~~~d~~~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK-~~pk~~yyfWsV~Slilqs~~  159 (932)
T KOG2053|consen   83 LQNVYRDLGKLDEAVHLYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYK-NFPKRAYYFWSVISLILQSIF  159 (932)
T ss_pred             HHHHHHHHhhhhHHHHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCcccchHHHHHHHHHHhcc
Confidence            999999999999999999998864  57888888888999999988776555555544 234456677677766654321


Q ss_pred             ----------HHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCccchHHHHHHHHHhcCChhHHHHHHH-HHHHcCCCC
Q 036107          298 ----------IYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQ-KIEEDSCKP  366 (441)
Q Consensus       298 ----------~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~~~li~~~~~~g~~~~a~~~~~-~m~~~g~~p  366 (441)
                                ..-|.+.++.+.+.+-+.....=     +       ..|-   ..+-..|++++|++++. ..-+.-..-
T Consensus       160 ~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE-----~-------~Lyl---~iL~~~~k~~eal~~l~~~la~~l~~~  224 (932)
T KOG2053|consen  160 SENELLDPILLALAEKMVQKLLEKKGKIESEAE-----I-------ILYL---LILELQGKYQEALEFLAITLAEKLTSA  224 (932)
T ss_pred             CCcccccchhHHHHHHHHHHHhccCCccchHHH-----H-------HHHH---HHHHhcccHHHHHHHHHHHHHHhcccc
Confidence                      23466666666664312221100     0       1122   22345677899999984 444444444


Q ss_pred             CHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCC
Q 036107          367 DCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKG  401 (441)
Q Consensus       367 ~~~t~~~li~~~~~~g~~~~a~~~~~~~~~m~~~~  401 (441)
                      +...-+.-+..+...+++.+..+   +..++..+|
T Consensus       225 ~~~l~~~~~dllk~l~~w~~l~~---l~~~Ll~k~  256 (932)
T KOG2053|consen  225 NLYLENKKLDLLKLLNRWQELFE---LSSRLLEKG  256 (932)
T ss_pred             chHHHHHHHHHHHHhcChHHHHH---HHHHHHHhC
Confidence            55555566777778888888644   555555444

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.06  E-value=0.17  Score=43.69  Aligned_cols=189  Identities=16%  Similarity=0.122  Sum_probs=131.7

Q ss_pred             HHHHHHhhhhhHhhhhcCC-CCCCHH-HHHHHHHHHHcCCChhHHHHHHHHHHHhcCCCccHHHHHHHHhhcCHHHHHHH
Q 036107          107 KVVEALKCFCFTWAKTQTG-YMHTPE-TYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVL  184 (441)
Q Consensus       107 ~~~~A~~~~~~~~~~~~~g-~~p~~~-~y~~li~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~l  184 (441)
                      +.++.++++..+......| ..|+.. .|..++-+....|+.+.|...+++....-++.+              .+-..-
T Consensus        27 nseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~--------------RV~~lk   92 (289)
T KOG3060|consen   27 NSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSK--------------RVGKLK   92 (289)
T ss_pred             CHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCCh--------------hHHHHH
Confidence            3455566666555555556 666654 677778888889999999999999887432221              111111


Q ss_pred             HHHHHhcCCHHHHHHHHHHhhhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHH
Q 036107          185 MDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFR  264 (441)
Q Consensus       185 i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~  264 (441)
                      --.+--.|+.++|.++++.+-+.-+.|.+++-.=+...--.|+--+|.+-+.+..+. +.-|...|.-+-..|...|+++
T Consensus        93 am~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~  171 (289)
T KOG3060|consen   93 AMLLEATGNYKEAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFE  171 (289)
T ss_pred             HHHHHHhhchhhHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHH
Confidence            122344689999999999986655778888876666666677767777777776654 5679999999999999999999


Q ss_pred             HHHHHHHHHHHcCCCC-CHHHHHHHHHHHHh---cCCHHHHHHHHHHHhhCC
Q 036107          265 KVDYTLKEMQEKGCKP-SVITCTIVMHALEK---AKQIYEALKVYEKMKSDD  312 (441)
Q Consensus       265 ~a~~l~~~m~~~g~~p-~~~~~~~ll~~~~~---~~~~~~a~~~~~~m~~~g  312 (441)
                      +|.-.++++.=.  .| +...|..+-..+.-   ..+.+.+.++|.+..+..
T Consensus       172 kA~fClEE~ll~--~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~  221 (289)
T KOG3060|consen  172 KAAFCLEELLLI--QPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLN  221 (289)
T ss_pred             HHHHHHHHHHHc--CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhC
Confidence            999999998764  34 34444444444433   345677888888887754

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=97.05  E-value=0.021  Score=46.13  Aligned_cols=58  Identities=7%  Similarity=0.084  Sum_probs=26.4

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 036107          215 FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEM  273 (441)
Q Consensus       215 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m  273 (441)
                      ...++..+...|+++.|.++.+.+.... +-|...|..+|.++...|+..+|.+.|+.+
T Consensus        65 ~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~  122 (146)
T PF03704_consen   65 LERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERY  122 (146)
T ss_dssp             HHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred             HHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence            3334444444555555555555554421 123445555555555555555555555544

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=97.04  E-value=0.0011  Score=47.83  Aligned_cols=80  Identities=15%  Similarity=0.154  Sum_probs=36.0

Q ss_pred             CCHHHHHHHHHHHhhCCC-CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 036107          226 RKSDYAQKAMKEMFQHGF-SPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKV  304 (441)
Q Consensus       226 ~~~~~a~~~~~~m~~~g~-~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~  304 (441)
                      |+++.|+.+|+++.+... .++...+-.+-.++.+.|++++|..+++. .+.+.. +....-.+..+|.+.|++++|.++
T Consensus         3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~-~~~~~~l~a~~~~~l~~y~eAi~~   80 (84)
T PF12895_consen    3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPS-NPDIHYLLARCLLKLGKYEEAIKA   80 (84)
T ss_dssp             T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHC-HHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred             ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCC-CHHHHHHHHHHHHHhCCHHHHHHH
Confidence            455555555555554321 11223333355555556666666665555 111111 112222334555556666666555


Q ss_pred             HHH
Q 036107          305 YEK  307 (441)
Q Consensus       305 ~~~  307 (441)
                      +++
T Consensus        81 l~~   83 (84)
T PF12895_consen   81 LEK   83 (84)
T ss_dssp             HHH
T ss_pred             Hhc
Confidence            543

>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase

Probab=97.02  E-value=0.013  Score=45.68  Aligned_cols=54  Identities=6%  Similarity=-0.086  Sum_probs=35.7

Q ss_pred             CCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHhc
Q 036107          242 GFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEK-GCKPSVITCTIVMHALEKA  295 (441)
Q Consensus       242 g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~-g~~p~~~~~~~ll~~~~~~  295 (441)
                      ...|+..+..+++.+|+.+|++..|+++.+...+. +++.+..+|..|++=+...
T Consensus        47 pl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~v~  101 (126)
T PF12921_consen   47 PLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAYVL  101 (126)
T ss_pred             CCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHh
Confidence            45567777777777777777777777777776543 5666667777776654433

The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=97.00  E-value=0.23  Score=45.10  Aligned_cols=229  Identities=13%  Similarity=0.074  Sum_probs=120.8

Q ss_pred             HHHHHHHHHHcCCChhHHHHHHHHHHHhcCCCccHHHHHHHHhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCc
Q 036107          132 TYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLS  211 (441)
Q Consensus       132 ~y~~li~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~  211 (441)
                      .|...-..|-..+++++|.+.|.+........-+.        ..-...|......|- .+++++|.             
T Consensus        37 ~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~--------~~Aa~~~~~Aa~~~k-~~~~~~Ai-------------   94 (282)
T PF14938_consen   37 LYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDK--------FEAAKAYEEAANCYK-KGDPDEAI-------------   94 (282)
T ss_dssp             HHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-H--------HHHHHHHHHHHHHHH-HTTHHHHH-------------
T ss_pred             HHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCH--------HHHHHHHHHHHHHHH-hhCHHHHH-------------
Confidence            45555666777788888888887765421000000        000111111111211 11333333             


Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhc-CCHHHHHHHHHHHHH----cCCCC-CHHHH
Q 036107          212 SQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCRE-KDFRKVDYTLKEMQE----KGCKP-SVITC  285 (441)
Q Consensus       212 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~-g~~~~a~~l~~~m~~----~g~~p-~~~~~  285 (441)
                       ..|...+..|.+.|++..|-+++..+-+               .|-.. |++++|.+.|++..+    .|..- -..++
T Consensus        95 -~~~~~A~~~y~~~G~~~~aA~~~~~lA~---------------~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~  158 (282)
T PF14938_consen   95 -ECYEKAIEIYREAGRFSQAAKCLKELAE---------------IYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECL  158 (282)
T ss_dssp             -HHHHHHHHHHHHCT-HHHHHHHHHHHHH---------------HHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred             -HHHHHHHHHHHhcCcHHHHHHHHHHHHH---------------HHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHH
Confidence             2355556677777887777776666543               34445 788888888887643    23111 13456


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCccchHHHHHHHHHhcCChhHHHHHHHHHHHc--C
Q 036107          286 TIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEED--S  363 (441)
Q Consensus       286 ~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--g  363 (441)
                      ..+...+.+.|++++|.++|++....-...+..-|+. =         ..|-..+-.+...|++..|.+.|++....  +
T Consensus       159 ~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~-~---------~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~  228 (282)
T PF14938_consen  159 LKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSA-K---------EYFLKAILCHLAMGDYVAARKALERYCSQDPS  228 (282)
T ss_dssp             HHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHH-H---------HHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTT
T ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhH-H---------HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence            7778889999999999999999877543222111100 0         11334455677789999999999998743  3


Q ss_pred             CCCC--HHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 036107          364 CKPD--CETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLA  413 (441)
Q Consensus       364 ~~p~--~~t~~~li~~~~~~g~~~~a~~~~~~~~~m~~~~~~p~~~~~~~ll  413 (441)
                      +..+  ......||.+| +.|+.+.....+.-++.    -.+.|..--..|+
T Consensus       229 F~~s~E~~~~~~l~~A~-~~~D~e~f~~av~~~d~----~~~ld~w~~~~l~  275 (282)
T PF14938_consen  229 FASSREYKFLEDLLEAY-EEGDVEAFTEAVAEYDS----ISRLDNWKTKMLL  275 (282)
T ss_dssp             STTSHHHHHHHHHHHHH-HTT-CCCHHHHCHHHTT----SS---HHHHHHHH
T ss_pred             CCCcHHHHHHHHHHHHH-HhCCHHHHHHHHHHHcc----cCccHHHHHHHHH
Confidence            4333  33566667776 45565554443334444    2344554444443

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=96.97  E-value=0.028  Score=46.57  Aligned_cols=63  Identities=11%  Similarity=-0.038  Sum_probs=29.0

Q ss_pred             hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 036107          248 VSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKP--SVITCTIVMHALEKAKQIYEALKVYEKMKS  310 (441)
Q Consensus       248 ~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p--~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~  310 (441)
                      ..|..+...+...|++++|...|++.......+  ...++..+-..+.+.|++++|...++...+
T Consensus        36 ~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~  100 (168)
T CHL00033         36 FTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALE  100 (168)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            334444444444555555555555544332111  123444444555555555555555554443

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=96.95  E-value=0.042  Score=44.29  Aligned_cols=118  Identities=17%  Similarity=0.126  Sum_probs=74.1

Q ss_pred             HhcCCHHHHHHHHHHHhhC--C-CCCCHH--HHHHHHHHHHhcCccchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC
Q 036107          293 EKAKQIYEALKVYEKMKSD--D-CLTDTS--FYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPD  367 (441)
Q Consensus       293 ~~~~~~~~a~~~~~~m~~~--g-~~~~~~--~~~~li~~~~~~g~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~  367 (441)
                      ...++.+.+...+.++...  | +-++..  .|..-.....+.........++..+...|++++|+.+.+...... .-|
T Consensus        17 ~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~   95 (146)
T PF03704_consen   17 ARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQRALALD-PYD   95 (146)
T ss_dssp             HHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-
T ss_pred             HHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC-CCC
Confidence            4556677777777666552  2 222211  122222222222222447778888889999999999999998653 456


Q ss_pred             HHHHHHHHHHHHhcCChhhHHHHHHHHHHHHH--CCCCCCHHHHHH
Q 036107          368 CETHARSLKMCCHKKRMKDGMLVLNLMREMLS--KGIVPQESTHKM  411 (441)
Q Consensus       368 ~~t~~~li~~~~~~g~~~~a~~~~~~~~~m~~--~~~~p~~~~~~~  411 (441)
                      ...|..+|.+|...|+...|.++++.+.++..  .|+.|+..+-..
T Consensus        96 E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~~l  141 (146)
T PF03704_consen   96 EEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETRAL  141 (146)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHHHH
T ss_pred             HHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHHHH
Confidence            77999999999999999999999998877655  499999886443

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>PF13170 DUF4003: Protein of unknown function (DUF4003)

Probab=96.94  E-value=0.091  Score=47.71  Aligned_cols=158  Identities=11%  Similarity=0.131  Sum_probs=101.3

Q ss_pred             HHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHh--cCC----HHHHHHHHHHHHHcCC---CCCHHHHHHHHHHHHhcCC-
Q 036107          228 SDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCR--EKD----FRKVDYTLKEMQEKGC---KPSVITCTIVMHALEKAKQ-  297 (441)
Q Consensus       228 ~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~--~g~----~~~a~~l~~~m~~~g~---~p~~~~~~~ll~~~~~~~~-  297 (441)
                      +++...+++.|.+.|+..+..+|-+..-....  ..+    ..+|..+|+.|++...   .++..++..++..  ..++ 
T Consensus        78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~  155 (297)
T PF13170_consen   78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV  155 (297)
T ss_pred             HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence            55677889999999999988777663333332  233    5679999999998742   4566778887765  3333 


Q ss_pred             ---HHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCccchHHHHHHHHHhcCC---hhHHHHHHHHHHHcCCCCCHHHH
Q 036107          298 ---IYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSE---EGNALKLRQKIEEDSCKPDCETH  371 (441)
Q Consensus       298 ---~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~~~li~~~~~~g~---~~~a~~~~~~m~~~g~~p~~~t~  371 (441)
                         .+.++.+|+.+.+.|+..+....               +.+-|-++.....   +..+.++++.+++.|+++....|
T Consensus       156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ---------------~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~y  220 (297)
T PF13170_consen  156 EELAERMEQCYQKLADAGFKKGNDLQ---------------FLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHY  220 (297)
T ss_pred             HHHHHHHHHHHHHHHHhCCCCCcHHH---------------HHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccc
Confidence               35677888888888887765531               2222223322222   35788889999999999888887


Q ss_pred             HHHHHHHHhcCC-h-hhHHHHHHHHHHHHHC-CCC
Q 036107          372 ARSLKMCCHKKR-M-KDGMLVLNLMREMLSK-GIV  403 (441)
Q Consensus       372 ~~li~~~~~~g~-~-~~a~~~~~~~~~m~~~-~~~  403 (441)
                      ..+ ..++-.+. . ..+..+.++.+.+.+. ++.
T Consensus       221 p~l-GlLall~~~~~~~~~~i~ev~~~L~~~k~~~  254 (297)
T PF13170_consen  221 PTL-GLLALLEDPEEKIVEEIKEVIDELKEQKGFG  254 (297)
T ss_pred             cHH-HHHHhcCCchHHHHHHHHHHHHHHhhCcccC
Confidence            544 33333333 3 4455555555555543 555

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=96.92  E-value=0.022  Score=53.58  Aligned_cols=102  Identities=13%  Similarity=0.055  Sum_probs=77.5

Q ss_pred             HHHHcCCChhHHHHHHHHHHHhcCCCccHHHHHHHHhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcHHHHHH
Q 036107          138 EALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDV  217 (441)
Q Consensus       138 ~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~  217 (441)
                      ..+...|+++.|++.|++..+..+.              +...|..+..++.+.|++++|+..++......+.+...|..
T Consensus        10 ~~a~~~~~~~~Ai~~~~~Al~~~P~--------------~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~   75 (356)
T PLN03088         10 KEAFVDDDFALAVDLYTQAIDLDPN--------------NAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLR   75 (356)
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCC--------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHH
Confidence            3455678999999999998886532              56778888888888999999999988875544556777888


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHH
Q 036107          218 LIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIE  255 (441)
Q Consensus       218 li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~  255 (441)
                      +-.+|...|++++|...|++..+.  .|+.......+.
T Consensus        76 lg~~~~~lg~~~eA~~~~~~al~l--~P~~~~~~~~l~  111 (356)
T PLN03088         76 KGTACMKLEEYQTAKAALEKGASL--APGDSRFTKLIK  111 (356)
T ss_pred             HHHHHHHhCCHHHHHHHHHHHHHh--CCCCHHHHHHHH
Confidence            888888999999999999888874  455544444443

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=96.90  E-value=0.026  Score=46.76  Aligned_cols=83  Identities=7%  Similarity=-0.065  Sum_probs=46.5

Q ss_pred             HHHHHHHHHHHHcCCChhHHHHHHHHHHHhcCCCccHHHHHHHHhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCC
Q 036107          130 PETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCIS  209 (441)
Q Consensus       130 ~~~y~~li~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~  209 (441)
                      ...|..+...+...|++++|...|++.....+..+.           ...++..+-..+...|+.++|+..++..-...+
T Consensus        35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~-----------~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~  103 (168)
T CHL00033         35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYD-----------RSYILYNIGLIHTSNGEHTKALEYYFQALERNP  103 (168)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchh-----------hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc
Confidence            345566666666677777777777776653311110           234566666667777777777777766533223


Q ss_pred             CcHHHHHHHHHHHH
Q 036107          210 LSSQIFDVLIHGWC  223 (441)
Q Consensus       210 ~~~~~~~~li~~~~  223 (441)
                      ....++..+...+.
T Consensus       104 ~~~~~~~~la~i~~  117 (168)
T CHL00033        104 FLPQALNNMAVICH  117 (168)
T ss_pred             CcHHHHHHHHHHHH
Confidence            33344444444444

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=96.88  E-value=0.055  Score=45.02  Aligned_cols=92  Identities=7%  Similarity=-0.044  Sum_probs=60.8

Q ss_pred             HHHHHHHHHHHHcCCChhHHHHHHHHHHHhcCCCccHHHHHHHHhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCC
Q 036107          130 PETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCIS  209 (441)
Q Consensus       130 ~~~y~~li~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~  209 (441)
                      ...|..+-..+...|++++|...|++.....+..+.           ....+..+...+.+.|++++|...+.+.-...+
T Consensus        35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~-----------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p  103 (172)
T PRK02603         35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPND-----------RSYILYNMGIIYASNGEHDKALEYYHQALELNP  103 (172)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccch-----------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc
Confidence            345667777777888888888888887764422210           135677777788888888888888877644333


Q ss_pred             CcHHHHHHHHHHHHhcCCHHHHH
Q 036107          210 LSSQIFDVLIHGWCKTRKSDYAQ  232 (441)
Q Consensus       210 ~~~~~~~~li~~~~~~~~~~~a~  232 (441)
                      -+...+..+...+...|+...+.
T Consensus       104 ~~~~~~~~lg~~~~~~g~~~~a~  126 (172)
T PRK02603        104 KQPSALNNIAVIYHKRGEKAEEA  126 (172)
T ss_pred             ccHHHHHHHHHHHHHcCChHhHh
Confidence            45555666666776666644433

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=96.86  E-value=0.072  Score=44.33  Aligned_cols=86  Identities=8%  Similarity=-0.061  Sum_probs=41.8

Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHhhh-C-CCC-cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHH
Q 036107          177 DTRAMSVLMDTLVKRNSVAHAYKVFLKFKD-C-ISL-SSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCF  253 (441)
Q Consensus       177 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~-~-~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l  253 (441)
                      ....+..+...+...|++++|...|++.-. . -.+ ....+..+...+.+.|++++|...+++..+.. +-+...+..+
T Consensus        34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l  112 (172)
T PRK02603         34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-PKQPSALNNI  112 (172)
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHH
Confidence            344455555555566666666666655421 1 111 12345555555556666666666665555421 1123334444


Q ss_pred             HHHHHhcCCH
Q 036107          254 IEHYCREKDF  263 (441)
Q Consensus       254 i~~~~~~g~~  263 (441)
                      ...+...|+.
T Consensus       113 g~~~~~~g~~  122 (172)
T PRK02603        113 AVIYHKRGEK  122 (172)
T ss_pred             HHHHHHcCCh
Confidence            4444444443

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=96.85  E-value=0.0048  Score=44.44  Aligned_cols=77  Identities=12%  Similarity=0.114  Sum_probs=32.6

Q ss_pred             CCHHHHHHHHHHhhhCCC--CcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC-HhhHHHHHHHHHhcCCHHHHHH
Q 036107          192 NSVAHAYKVFLKFKDCIS--LSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPD-GVSYTCFIEHYCREKDFRKVDY  268 (441)
Q Consensus       192 g~~~~a~~~~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~a~~  268 (441)
                      |+++.|+.+|+++-...+  ++...+-.+..+|.+.|++++|..++++ .+  +.|+ ....-.+-.++.+.|++++|++
T Consensus         3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~--~~~~~~~~~~l~a~~~~~l~~y~eAi~   79 (84)
T PF12895_consen    3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LK--LDPSNPDIHYLLARCLLKLGKYEEAIK   79 (84)
T ss_dssp             T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HT--HHHCHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred             ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hC--CCCCCHHHHHHHHHHHHHhCCHHHHHH
Confidence            455555555555422111  1222333345555555555555555555 11  1111 1222233444555555555555


Q ss_pred             HHH
Q 036107          269 TLK  271 (441)
Q Consensus       269 l~~  271 (441)
                      +|+
T Consensus        80 ~l~   82 (84)
T PF12895_consen   80 ALE   82 (84)
T ss_dssp             HHH
T ss_pred             HHh
Confidence            554

>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]

Probab=96.82  E-value=0.51  Score=45.35  Aligned_cols=161  Identities=12%  Similarity=0.116  Sum_probs=87.1

Q ss_pred             HHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcC---CHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 036107          228 SDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREK---DFRKVDYTLKEMQEK-GCKPSVITCTIVMHALEKAKQIYEALK  303 (441)
Q Consensus       228 ~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g---~~~~a~~l~~~m~~~-g~~p~~~~~~~ll~~~~~~~~~~~a~~  303 (441)
                      -+++..+++.....-..-+..+|..+.+.=-..-   ..+....++++.... .+.|+ .+|...|+.--+..-+..|+.
T Consensus       309 t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~t-Lv~~~~mn~irR~eGlkaaR~  387 (656)
T KOG1914|consen  309 TDEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLT-LVYCQYMNFIRRAEGLKAARK  387 (656)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCc-eehhHHHHHHHHhhhHHHHHH
Confidence            3455566665554322334444444433211111   245555555555443 33333 456666666666666777777


Q ss_pred             HHHHHhhCCCCC-CHHHHHHHHHHHHhcCccchHHH-----------------HHHHHHhcCChhHHHHHHHHHHHcCCC
Q 036107          304 VYEKMKSDDCLT-DTSFYSSLIFILSKAVRFLIYNT-----------------MISSACVRSEEGNALKLRQKIEEDSCK  365 (441)
Q Consensus       304 ~~~~m~~~g~~~-~~~~~~~li~~~~~~g~~~~~~~-----------------li~~~~~~g~~~~a~~~~~~m~~~g~~  365 (441)
                      +|.+..+.+..+ +..+++++|+-||.......|+.                 -+.-+...++-..|-.+|++....++.
T Consensus       388 iF~kaR~~~r~~hhVfVa~A~mEy~cskD~~~AfrIFeLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~  467 (656)
T KOG1914|consen  388 IFKKAREDKRTRHHVFVAAALMEYYCSKDKETAFRIFELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLS  467 (656)
T ss_pred             HHHHHhhccCCcchhhHHHHHHHHHhcCChhHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCC
Confidence            777776665555 55555555555555544422222                 333344444555666667776666555


Q ss_pred             CCH--HHHHHHHHHHHhcCChhhHHH
Q 036107          366 PDC--ETHARSLKMCCHKKRMKDGML  389 (441)
Q Consensus       366 p~~--~t~~~li~~~~~~g~~~~a~~  389 (441)
                      ||.  ..|..+|.-=+.-|++..+.+
T Consensus       468 ~~ks~~Iw~r~l~yES~vGdL~si~~  493 (656)
T KOG1914|consen  468 ADKSKEIWDRMLEYESNVGDLNSILK  493 (656)
T ss_pred             hhhhHHHHHHHHHHHHhcccHHHHHH
Confidence            544  467777777677777776655

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=96.77  E-value=0.71  Score=46.28  Aligned_cols=202  Identities=12%  Similarity=0.050  Sum_probs=119.9

Q ss_pred             chhhHHHHHHHHHhcCCChHHHHHHHhhhhhHhhhhcCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHhcCCCccH
Q 036107           87 HETDVDKVSEILRKRYPSPDKVVEALKCFCFTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSL  166 (441)
Q Consensus        87 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~g~~p~~~~y~~li~~~~~~~~~~~a~~l~~~m~~~~~~~~~~  166 (441)
                      ++-+. .++..|.-....+|++..+.+.|+..    .++.--....|+.+-..+.-.|.-..|..+++.-....+.+.  
T Consensus       319 ~qnd~-ai~d~Lt~al~~~g~f~~lae~fE~~----~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps--  391 (799)
T KOG4162|consen  319 FQNDA-AIFDHLTFALSRCGQFEVLAEQFEQA----LPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPS--  391 (799)
T ss_pred             hcchH-HHHHHHHHHHHHHHHHHHHHHHHHHH----hHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCC--
Confidence            44343 67788877888889999988888522    223333556788888888888888888888887655442221  


Q ss_pred             HHHHHHHhhcCHHHHHHHHHHHHh-cCCHHHHHHHHHHhh-------hCCCCcHHHHHHHHHHHHhc-----------CC
Q 036107          167 AAMSTVMRRLDTRAMSVLMDTLVK-RNSVAHAYKVFLKFK-------DCISLSSQIFDVLIHGWCKT-----------RK  227 (441)
Q Consensus       167 ~~~~~~~~~~~~~~~~~li~~~~~-~g~~~~a~~~~~~~~-------~~~~~~~~~~~~li~~~~~~-----------~~  227 (441)
                                |+..+-..-..|.+ .+..++++.+-.+.-       +.+.|-  .|-.+--+|...           ..
T Consensus       392 ----------~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~--~~l~lGi~y~~~A~~a~~~seR~~~  459 (799)
T KOG4162|consen  392 ----------DISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPR--GYLFLGIAYGFQARQANLKSERDAL  459 (799)
T ss_pred             ----------cchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhh--HHHHHHHHHHhHhhcCCChHHHHHH
Confidence                      33333333333332 356666655554431       122232  333333333321           12


Q ss_pred             HHHHHHHHHHHhhCC-CCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 036107          228 SDYAQKAMKEMFQHG-FSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYE  306 (441)
Q Consensus       228 ~~~a~~~~~~m~~~g-~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~  306 (441)
                      ..++++.+++..+.+ -.|++.-|-++=  |+..++.+.|.+..++..+.+-.-+...|..+.-.+...+++.+|+.+.+
T Consensus       460 h~kslqale~av~~d~~dp~~if~lalq--~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd  537 (799)
T KOG4162|consen  460 HKKSLQALEEAVQFDPTDPLVIFYLALQ--YAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVD  537 (799)
T ss_pred             HHHHHHHHHHHHhcCCCCchHHHHHHHH--HHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHH
Confidence            446667777776542 334443333332  45566788888888887777555677777777777777777777777766


Q ss_pred             HHh
Q 036107          307 KMK  309 (441)
Q Consensus       307 ~m~  309 (441)
                      ...
T Consensus       538 ~al  540 (799)
T KOG4162|consen  538 AAL  540 (799)
T ss_pred             HHH
Confidence            543

>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]

Probab=96.75  E-value=0.017  Score=50.38  Aligned_cols=105  Identities=13%  Similarity=0.147  Sum_probs=63.7

Q ss_pred             CCHhhHHHHHHHHHhc-----CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHH
Q 036107          245 PDGVSYTCFIEHYCRE-----KDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSF  319 (441)
Q Consensus       245 p~~~~~~~li~~~~~~-----g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~  319 (441)
                      .|-.+|-+.+..+...     +.++-....++.|.+-|+.-|..+|+.||+.+=+                ..+.|.   
T Consensus        65 RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPK----------------gkfiP~---  125 (406)
T KOG3941|consen   65 RDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPK----------------GKFIPQ---  125 (406)
T ss_pred             ccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcc----------------cccccH---
Confidence            4555555555555432     3455555555556666666566666555543322                112221   


Q ss_pred             HHHHHHHHHhcCccchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCh
Q 036107          320 YSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRM  384 (441)
Q Consensus       320 ~~~li~~~~~~g~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~  384 (441)
                                    ..+..+.-.|-+..  +-+++++++|...|+.||..+-..|+.++.+.+-.
T Consensus       126 --------------nvfQ~~F~HYP~QQ--~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p  174 (406)
T KOG3941|consen  126 --------------NVFQKVFLHYPQQQ--NCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFP  174 (406)
T ss_pred             --------------HHHHHHHhhCchhh--hHHHHHHHHHHHcCCCCchHHHHHHHHHhcccccc
Confidence                          11333333333332  45899999999999999999999999999887764

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=96.75  E-value=0.0065  Score=41.57  Aligned_cols=62  Identities=16%  Similarity=0.218  Sum_probs=34.6

Q ss_pred             hcCCHHHHHHHHHHhhhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHH
Q 036107          190 KRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCF  253 (441)
Q Consensus       190 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l  253 (441)
                      +.|++++|+++|+.+-...+-+...+-.+..+|.+.|++++|.++++++...  .|+...|..+
T Consensus         3 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~--~~~~~~~~~l   64 (68)
T PF14559_consen    3 KQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ--DPDNPEYQQL   64 (68)
T ss_dssp             HTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG--GTTHHHHHHH
T ss_pred             hccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCHHHHHHH
Confidence            4566666666666654433445555556666666666666666666666553  3443344333

...

>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase

Probab=96.75  E-value=0.031  Score=43.53  Aligned_cols=100  Identities=7%  Similarity=-0.046  Sum_probs=63.6

Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCccchHHHHHHHHHhcCChhHHHHHHHHHH
Q 036107          281 SVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIE  360 (441)
Q Consensus       281 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~~~li~~~~~~g~~~~a~~~~~~m~  360 (441)
                      |..++.++|.++++.|+++....+.+..-  |+.++...                         ..+.         --.
T Consensus         1 de~~~~~ii~al~r~g~~~~i~~~i~~~W--gI~~~~~~-------------------------~~~~---------~~~   44 (126)
T PF12921_consen    1 DEELLCNIIYALGRSGQLDSIKSYIKSVW--GIDVNGKK-------------------------KEGD---------YPP   44 (126)
T ss_pred             ChHHHHHHHHHHhhcCCHHHHHHHHHHhc--CCCCCCcc-------------------------ccCc---------cCC
Confidence            45677777777888888777777775443  22222110                         0000         112


Q ss_pred             HcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 036107          361 EDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEK  418 (441)
Q Consensus       361 ~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~~~~m~~~~~~p~~~~~~~ll~~~~~  418 (441)
                      .....|+..+..+++.+|+..|++..|.++.+.+.+  ..++..+..+|..|++-...
T Consensus        45 ~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~--~Y~I~i~~~~W~~Ll~W~~v  100 (126)
T PF12921_consen   45 SSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSR--KYPIPIPKEFWRRLLEWAYV  100 (126)
T ss_pred             CCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHH--HcCCCCCHHHHHHHHHHHHH
Confidence            344678888888888888888888888776666655  45677777788888776643

The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].

>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length

Probab=96.66  E-value=0.6  Score=43.95  Aligned_cols=149  Identities=12%  Similarity=0.097  Sum_probs=87.6

Q ss_pred             HhhhhchhhHHHHHhhhcCchhhH----HHHHHHHHhcCCChHHHHHHHhhhh--hHhhhhcCCCCCCHHHHHHHHHHHH
Q 036107           68 ESLKLNEQSRISSHALSEDHETDV----DKVSEILRKRYPSPDKVVEALKCFC--FTWAKTQTGYMHTPETYNAMVEALG  141 (441)
Q Consensus        68 ~~~~~~~~~~i~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~--~~~~~~~~g~~p~~~~y~~li~~~~  141 (441)
                      +.++++++..|+..+.+.......    +.+.+.++.+|-..+     ++.+.  .+...++.|-.|-...+..+.  +-
T Consensus        18 kq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl~n-----ld~Me~~l~~l~~~~~~s~~l~LF~~L~--~Y   90 (549)
T PF07079_consen   18 KQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFLNN-----LDLMEKQLMELRQQFGKSAYLPLFKALV--AY   90 (549)
T ss_pred             HHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHHhh-----HHHHHHHHHHHHHhcCCchHHHHHHHHH--HH
Confidence            457789999999888765433322    223344444443322     22221  112233444333333333332  34


Q ss_pred             cCCChhHHHHHHHHHHHh--cCCCccHHHHHHHHhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhh-----CCCCcHHH
Q 036107          142 KSKKFGLMWELVKEIDEL--SNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKD-----CISLSSQI  214 (441)
Q Consensus       142 ~~~~~~~a~~l~~~m~~~--~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~-----~~~~~~~~  214 (441)
                      +.++++.|.+.+....+.  +...+..++-... .-.|..--+...+++...|++.++..+.+++..     ....+..+
T Consensus        91 ~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~-l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~  169 (549)
T PF07079_consen   91 KQKEYRKALQALSVWKEQIKGTESPWLDTNIQQ-LFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDM  169 (549)
T ss_pred             HhhhHHHHHHHHHHHHhhhcccccchhhhhHHH-HhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHH
Confidence            678999999999888775  3222222221111 111444557788899999999999999998833     45589999


Q ss_pred             HHHHHHHHHh
Q 036107          215 FDVLIHGWCK  224 (441)
Q Consensus       215 ~~~li~~~~~  224 (441)
                      ||.++-.+++
T Consensus       170 yd~~vlmlsr  179 (549)
T PF07079_consen  170 YDRAVLMLSR  179 (549)
T ss_pred             HHHHHHHHhH
Confidence            9997766655

Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.

>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length

Probab=96.64  E-value=0.61  Score=43.88  Aligned_cols=244  Identities=14%  Similarity=0.109  Sum_probs=139.7

Q ss_pred             HHhcCCHHHHHHHHHHhhhCCCCc------HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHH--HHh
Q 036107          188 LVKRNSVAHAYKVFLKFKDCISLS------SQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEH--YCR  259 (441)
Q Consensus       188 ~~~~g~~~~a~~~~~~~~~~~~~~------~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~--~~~  259 (441)
                      +-+.+++.+|.++|.++-+....+      ...-+.+|++|... +++.....+.+..+.  .| ...|-.+..+  +.+
T Consensus        16 Lqkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl~-nld~Me~~l~~l~~~--~~-~s~~l~LF~~L~~Y~   91 (549)
T PF07079_consen   16 LQKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFLN-NLDLMEKQLMELRQQ--FG-KSAYLPLFKALVAYK   91 (549)
T ss_pred             HHHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHHh-hHHHHHHHHHHHHHh--cC-CchHHHHHHHHHHHH
Confidence            346799999999999984322222      33455677888765 566666666666653  23 3334444443  346


Q ss_pred             cCCHHHHHHHHHHHHHc--CCCC------------CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCC----CCCHHHHH
Q 036107          260 EKDFRKVDYTLKEMQEK--GCKP------------SVITCTIVMHALEKAKQIYEALKVYEKMKSDDC----LTDTSFYS  321 (441)
Q Consensus       260 ~g~~~~a~~l~~~m~~~--g~~p------------~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~----~~~~~~~~  321 (441)
                      .+++++|.+.+..-.++  +..|            |..-=+..++++.+.|++.+++.++++|...=+    .-+..+|+
T Consensus        92 ~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd  171 (549)
T PF07079_consen   92 QKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYD  171 (549)
T ss_pred             hhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHH
Confidence            78899999888766544  3222            222335677889999999999999999876533    36888999


Q ss_pred             HHHHHHHhcCcc-----------chHHHHHHHHHhcCChhH---------HHHHHHH----------------------H
Q 036107          322 SLIFILSKAVRF-----------LIYNTMISSACVRSEEGN---------ALKLRQK----------------------I  359 (441)
Q Consensus       322 ~li~~~~~~g~~-----------~~~~~li~~~~~~g~~~~---------a~~~~~~----------------------m  359 (441)
                      .++-+++++--.           .-|--||..|.+.=+.-+         +.+++..                      -
T Consensus       172 ~~vlmlsrSYfLEl~e~~s~dl~pdyYemilfY~kki~~~d~~~Y~k~~peeeL~s~imqhlfi~p~e~l~~~mq~l~~W  251 (549)
T PF07079_consen  172 RAVLMLSRSYFLELKESMSSDLYPDYYEMILFYLKKIHAFDQRPYEKFIPEEELFSTIMQHLFIVPKERLPPLMQILENW  251 (549)
T ss_pred             HHHHHHhHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHhhchHHhhCcHHHHHHHHHHHHHhCCHhhccHHHHHHHHH
Confidence            988777776322           334444444443311111         1122211                      1


Q ss_pred             HHcCCCCCHH-HHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhh
Q 036107          360 EEDSCKPDCE-THARSLKMCCHKKRMKDGMLVLNLMREMLSKGIV-PQESTHKMLAEELEKKSLGNAKERIDELLTHATE  437 (441)
Q Consensus       360 ~~~g~~p~~~-t~~~li~~~~~~g~~~~a~~~~~~~~~m~~~~~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~  437 (441)
                      ...-+.|+.. ....++..+.+  +.+++..+.+.+....-..++ -=..++..++....+.++..+|...+..++-...
T Consensus       252 e~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~ldp  329 (549)
T PF07079_consen  252 ENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLKILDP  329 (549)
T ss_pred             HhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcCC
Confidence            2223445433 22233333333  333443333222221100000 0124678888888888888888888887765543

Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=96.60  E-value=0.87  Score=45.20  Aligned_cols=212  Identities=9%  Similarity=0.008  Sum_probs=107.4

Q ss_pred             hchhhHHHHHhhhcCchhhHHHHHHHHHhcCCChHHHHHHHhhhhhHhhhhcCCCCCCHHHHHHHHHHHHcCCChhHHHH
Q 036107           72 LNEQSRISSHALSEDHETDVDKVSEILRKRYPSPDKVVEALKCFCFTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWE  151 (441)
Q Consensus        72 ~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~g~~p~~~~y~~li~~~~~~~~~~~a~~  151 (441)
                      ++-...+++.+...+..|+-..+.+..++......++.++..+=+..   .-..-.|.+..|..+-..-...-.++-|..
T Consensus       637 LeitsVlld~Il~~pE~pnk~~ii~~~ikslrD~~~Lve~vgledA~---qfiEdnPHprLWrllAe~Al~Kl~l~tAE~  713 (1189)
T KOG2041|consen  637 LEITSVLLDKILLTPENPNKTCIIEVMIKSLRDVMNLVEAVGLEDAI---QFIEDNPHPRLWRLLAEYALFKLALDTAEH  713 (1189)
T ss_pred             eEEEEEEHhhHhcCcCCCCcceEEEEEehhhhhHHHHHHHhchHHHH---HHHhcCCchHHHHHHHHHHHHHHhhhhHhh
Confidence            33444455556665555554333343443333333333333221100   000112667777777666666566666666


Q ss_pred             HHHHHHHhcCCCccHHHHHHHHhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcHHHHHHHHHHHHhcCCHHHH
Q 036107          152 LVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYA  231 (441)
Q Consensus       152 l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a  231 (441)
                      .|-+...    ++....+..+-.-.+.+.-.+=+.+|  -|.+|+|+++|-.+..        -..-|..+.+.|++-.+
T Consensus       714 AFVrc~d----Y~Gik~vkrl~~i~s~~~q~aei~~~--~g~feeaek~yld~dr--------rDLAielr~klgDwfrV  779 (1189)
T KOG2041|consen  714 AFVRCGD----YAGIKLVKRLRTIHSKEQQRAEISAF--YGEFEEAEKLYLDADR--------RDLAIELRKKLGDWFRV  779 (1189)
T ss_pred             hhhhhcc----ccchhHHHHhhhhhhHHHHhHhHhhh--hcchhHhhhhhhccch--------hhhhHHHHHhhhhHHHH
Confidence            6655432    12221111111111222222223322  4888888888876632        23356667777777777


Q ss_pred             HHHHHHHhhCCCC--CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 036107          232 QKAMKEMFQHGFS--PDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMK  309 (441)
Q Consensus       232 ~~~~~~m~~~g~~--p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~  309 (441)
                      .++++.=- .+..  .-...|+.+-..++....|++|.+.+..-...         ...+.++.+..++++-+.+-..+.
T Consensus       780 ~qL~r~g~-~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~---------e~~~ecly~le~f~~LE~la~~Lp  849 (1189)
T KOG2041|consen  780 YQLIRNGG-SDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDT---------ENQIECLYRLELFGELEVLARTLP  849 (1189)
T ss_pred             HHHHHccC-CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch---------HhHHHHHHHHHhhhhHHHHHHhcC
Confidence            66664311 1110  11346777777777777777777777653221         345666666666666666655554


Q ss_pred             h
Q 036107          310 S  310 (441)
Q Consensus       310 ~  310 (441)
                      +
T Consensus       850 e  850 (1189)
T KOG2041|consen  850 E  850 (1189)
T ss_pred             c
Confidence            4

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=96.58  E-value=0.4  Score=42.34  Aligned_cols=54  Identities=6%  Similarity=-0.075  Sum_probs=30.4

Q ss_pred             HHHHHHhcCChhHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHhcCChhhHHHHHH
Q 036107          339 MISSACVRSEEGNALKLRQKIEED--SCKPDCETHARSLKMCCHKKRMKDGMLVLN  392 (441)
Q Consensus       339 li~~~~~~g~~~~a~~~~~~m~~~--g~~p~~~t~~~li~~~~~~g~~~~a~~~~~  392 (441)
                      +..-|.+.|.+..|+.-++.+.+.  +..........++.+|.+.|..++|.++..
T Consensus       181 ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~  236 (243)
T PRK10866        181 VAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAK  236 (243)
T ss_pred             HHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHH
Confidence            334456666666666666666542  333344455556666666666666655443

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=96.53  E-value=0.73  Score=46.18  Aligned_cols=128  Identities=13%  Similarity=0.032  Sum_probs=98.1

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC-HhhHHHHHHHHH
Q 036107          180 AMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPD-GVSYTCFIEHYC  258 (441)
Q Consensus       180 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~  258 (441)
                      .|...-..+.+.+..++|.....+.....+.....|...-..+...|.+++|.+.|..-..  +.|+ +.+.+++-..+.
T Consensus       652 lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~--ldP~hv~s~~Ala~~ll  729 (799)
T KOG4162|consen  652 LWLLAADLFLLSGNDDEARSCLLEASKIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALA--LDPDHVPSMTALAELLL  729 (799)
T ss_pred             HHHHHHHHHHhcCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHh--cCCCCcHHHHHHHHHHH
Confidence            3445556667777778887777776665666777777777777888889999988887765  3454 467788888888


Q ss_pred             hcCCHHHHHH--HHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 036107          259 REKDFRKVDY--TLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKS  310 (441)
Q Consensus       259 ~~g~~~~a~~--l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~  310 (441)
                      +.|+..-|..  ++.++.+.+. .+...|-.+-..+-+.|+.+.|-+.|....+
T Consensus       730 e~G~~~la~~~~~L~dalr~dp-~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~q  782 (799)
T KOG4162|consen  730 ELGSPRLAEKRSLLSDALRLDP-LNHEAWYYLGEVFKKLGDSKQAAECFQAALQ  782 (799)
T ss_pred             HhCCcchHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHccchHHHHHHHHHHHh
Confidence            8888777777  8888888754 3778888999999999999999999987655

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=96.51  E-value=0.014  Score=39.90  Aligned_cols=52  Identities=13%  Similarity=0.157  Sum_probs=30.0

Q ss_pred             hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 036107          259 REKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSD  311 (441)
Q Consensus       259 ~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~  311 (441)
                      +.|++++|.++|+++.+.... +...+..+..+|.+.|++++|..+++.+...
T Consensus         3 ~~~~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~   54 (68)
T PF14559_consen    3 KQGDYDEAIELLEKALQRNPD-NPEARLLLAQCYLKQGQYDEAEELLERLLKQ   54 (68)
T ss_dssp             HTTHHHHHHHHHHHHHHHTTT-SHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred             hccCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            456666666666666554322 4555555666666666666666666666554

...

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=96.50  E-value=0.072  Score=50.10  Aligned_cols=101  Identities=9%  Similarity=0.038  Sum_probs=81.0

Q ss_pred             HHHHhcCCHHHHHHHHHHhhhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHH
Q 036107          186 DTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRK  265 (441)
Q Consensus       186 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~  265 (441)
                      ..+...|+++.|++.|++.-...+-+...|..+-.+|.+.|++++|+..+++..+.. +.+...|..+-.+|...|++++
T Consensus        10 ~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg~~~e   88 (356)
T PLN03088         10 KEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLEEYQT   88 (356)
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCCHHH
Confidence            455678999999999999865556677888889999999999999999999998753 2256788888899999999999


Q ss_pred             HHHHHHHHHHcCCCCCHHHHHHHH
Q 036107          266 VDYTLKEMQEKGCKPSVITCTIVM  289 (441)
Q Consensus       266 a~~l~~~m~~~g~~p~~~~~~~ll  289 (441)
                      |...|++..+..  |+.......+
T Consensus        89 A~~~~~~al~l~--P~~~~~~~~l  110 (356)
T PLN03088         89 AKAALEKGASLA--PGDSRFTKLI  110 (356)
T ss_pred             HHHHHHHHHHhC--CCCHHHHHHH
Confidence            999999988753  4444444333

>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=96.49  E-value=0.69  Score=42.60  Aligned_cols=84  Identities=23%  Similarity=0.139  Sum_probs=68.6

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 036107          214 IFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALE  293 (441)
Q Consensus       214 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~  293 (441)
                      +.+..|.-+...|+...|.++-.+..-    ||..-|-..|.+++..++|++..++...    .  -+++.|-..+.+|.
T Consensus       179 Sl~~Ti~~li~~~~~k~A~kl~k~Fkv----~dkrfw~lki~aLa~~~~w~eL~~fa~s----k--KsPIGyepFv~~~~  248 (319)
T PF04840_consen  179 SLNDTIRKLIEMGQEKQAEKLKKEFKV----PDKRFWWLKIKALAENKDWDELEKFAKS----K--KSPIGYEPFVEACL  248 (319)
T ss_pred             CHHHHHHHHHHCCCHHHHHHHHHHcCC----cHHHHHHHHHHHHHhcCCHHHHHHHHhC----C--CCCCChHHHHHHHH
Confidence            455567777888999999998887753    8999999999999999999988876442    1  24588999999999


Q ss_pred             hcCCHHHHHHHHHH
Q 036107          294 KAKQIYEALKVYEK  307 (441)
Q Consensus       294 ~~~~~~~a~~~~~~  307 (441)
                      +.|+..+|..+...
T Consensus       249 ~~~~~~eA~~yI~k  262 (319)
T PF04840_consen  249 KYGNKKEASKYIPK  262 (319)
T ss_pred             HCCCHHHHHHHHHh
Confidence            99999999888877

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>smart00299 CLH Clathrin heavy chain repeat homology

Probab=96.35  E-value=0.39  Score=38.28  Aligned_cols=41  Identities=12%  Similarity=0.101  Sum_probs=17.0

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHh
Q 036107          218 LIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCR  259 (441)
Q Consensus       218 li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~  259 (441)
                      +|..+...+.......+++.+...|. .+...+|.+|..|++
T Consensus        13 vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~   53 (140)
T smart00299       13 VVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAK   53 (140)
T ss_pred             HHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHH
Confidence            33444444444444444444443331 333344444444443

>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=96.35  E-value=0.84  Score=42.06  Aligned_cols=105  Identities=16%  Similarity=0.115  Sum_probs=58.7

Q ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHH
Q 036107          249 SYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILS  328 (441)
Q Consensus       249 ~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~  328 (441)
                      +.+..|.-+...|+...|.++-++.   .+ |+..-|-..+.+++..+++++-.++...    .-.|             
T Consensus       179 Sl~~Ti~~li~~~~~k~A~kl~k~F---kv-~dkrfw~lki~aLa~~~~w~eL~~fa~s----kKsP-------------  237 (319)
T PF04840_consen  179 SLNDTIRKLIEMGQEKQAEKLKKEF---KV-PDKRFWWLKIKALAENKDWDELEKFAKS----KKSP-------------  237 (319)
T ss_pred             CHHHHHHHHHHCCCHHHHHHHHHHc---CC-cHHHHHHHHHHHHHhcCCHHHHHHHHhC----CCCC-------------
Confidence            4444555556666666665554444   22 5666666666666666666666554332    1122             


Q ss_pred             hcCccchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHH
Q 036107          329 KAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGML  389 (441)
Q Consensus       329 ~~g~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~  389 (441)
                           ..|-.++..|.+.|+..+|..+..++          ++..-+..|.+.|++.+|.+
T Consensus       238 -----IGyepFv~~~~~~~~~~eA~~yI~k~----------~~~~rv~~y~~~~~~~~A~~  283 (319)
T PF04840_consen  238 -----IGYEPFVEACLKYGNKKEASKYIPKI----------PDEERVEMYLKCGDYKEAAQ  283 (319)
T ss_pred             -----CChHHHHHHHHHCCCHHHHHHHHHhC----------ChHHHHHHHHHCCCHHHHHH
Confidence                 22666666666666666666665551          12344556666666666644

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]

Probab=96.35  E-value=0.029  Score=49.01  Aligned_cols=102  Identities=15%  Similarity=0.143  Sum_probs=77.9

Q ss_pred             CCcHHHHHHHHHHHHh-----cCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcC----------------CHHHHH
Q 036107          209 SLSSQIFDVLIHGWCK-----TRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREK----------------DFRKVD  267 (441)
Q Consensus       209 ~~~~~~~~~li~~~~~-----~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g----------------~~~~a~  267 (441)
                      ..|..+|-+.+..|..     .+.++-....++.|.+.|+..|..+|+.||+.+-+..                +-+-+.
T Consensus        64 ~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~I  143 (406)
T KOG3941|consen   64 KRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCAI  143 (406)
T ss_pred             cccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHHH
Confidence            3455667777766654     3667888888899999999999999999999876533                224589


Q ss_pred             HHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHH-HHHHHHHHHhh
Q 036107          268 YTLKEMQEKGCKPSVITCTIVMHALEKAKQIY-EALKVYEKMKS  310 (441)
Q Consensus       268 ~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~-~a~~~~~~m~~  310 (441)
                      +++++|...|+.||..+-..|++++.+.+-.- +..++.-.|.+
T Consensus       144 ~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWmPk  187 (406)
T KOG3941|consen  144 KVLEQMEWHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWMPK  187 (406)
T ss_pred             HHHHHHHHcCCCCchHHHHHHHHHhccccccHHHHHHHHHhhhh
Confidence            99999999999999999999999998887643 34444444443

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=96.32  E-value=0.39  Score=47.51  Aligned_cols=137  Identities=14%  Similarity=0.089  Sum_probs=76.9

Q ss_pred             CCCCCCHHHHHHHHHHHHcCC-----ChhHHHHHHHHHHHhcCCCccHHHHHHHHhhcCHHHHHHHHHHHHhc-------
Q 036107          124 TGYMHTPETYNAMVEALGKSK-----KFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKR-------  191 (441)
Q Consensus       124 ~g~~p~~~~y~~li~~~~~~~-----~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~-------  191 (441)
                      .+...+...|...+.+.....     +...|.++|++..+..|...              ..+..+..++...       
T Consensus       331 ~~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a--------------~a~A~la~~~~~~~~~~~~~  396 (517)
T PRK10153        331 QGLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFT--------------YAQAEKALADIVRHSQQPLD  396 (517)
T ss_pred             ccCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcH--------------HHHHHHHHHHHHHHhcCCcc
Confidence            455568899999999865433     36789999999999775532              3333322222111       


Q ss_pred             -CCHHHHHHHHHHhhh--CCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHH
Q 036107          192 -NSVAHAYKVFLKFKD--CISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDY  268 (441)
Q Consensus       192 -g~~~~a~~~~~~~~~--~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~  268 (441)
                       .+.+.+.+.......  ....+...|.++--.+...|++++|...+++....+  |+...|..+-..+...|+.++|.+
T Consensus       397 ~~~l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~  474 (517)
T PRK10153        397 EKQLAALSTELDNIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAAD  474 (517)
T ss_pred             HHHHHHHHHHHHHhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHH
Confidence             112222222222111  123334455555444445566666666666666543  566666666666666666666666


Q ss_pred             HHHHHHHc
Q 036107          269 TLKEMQEK  276 (441)
Q Consensus       269 l~~~m~~~  276 (441)
                      .+++....
T Consensus       475 ~~~~A~~L  482 (517)
T PRK10153        475 AYSTAFNL  482 (517)
T ss_pred             HHHHHHhc
Confidence            66665443

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=96.29  E-value=0.82  Score=41.39  Aligned_cols=225  Identities=12%  Similarity=0.059  Sum_probs=127.2

Q ss_pred             HHhcCCHHHHHHHHHHhhh---CCCCcHH------HHHHHHHHHHhcCCHHHHHHHHHHHhhC--------CCCCC----
Q 036107          188 LVKRNSVAHAYKVFLKFKD---CISLSSQ------IFDVLIHGWCKTRKSDYAQKAMKEMFQH--------GFSPD----  246 (441)
Q Consensus       188 ~~~~g~~~~a~~~~~~~~~---~~~~~~~------~~~~li~~~~~~~~~~~a~~~~~~m~~~--------g~~p~----  246 (441)
                      ..+.|+++.|..++.+.+.   ...|+..      .||.-...+.+..+++.|..++++-.+.        ...|+    
T Consensus         3 A~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~el   82 (278)
T PF08631_consen    3 AWKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSEL   82 (278)
T ss_pred             chhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHH
Confidence            3567999999999998854   2344332      3454445555443777777666554321        12233    


Q ss_pred             -HhhHHHHHHHHHhcCCH---HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHH
Q 036107          247 -GVSYTCFIEHYCREKDF---RKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSS  322 (441)
Q Consensus       247 -~~~~~~li~~~~~~g~~---~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~  322 (441)
                       ..++..++.+|...+..   ++|..+++.+...... ....|..-++.+.+.++.+++.+++.+|...-..++..    
T Consensus        83 r~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~-~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~~e~~----  157 (278)
T PF08631_consen   83 RLSILRLLANAYLEWDTYESVEKALNALRLLESEYGN-KPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDHSESN----  157 (278)
T ss_pred             HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCC-CcHHHHHHHHHHhccCChhHHHHHHHHHHHhcccccch----
Confidence             34677788888887764   4566677777554322 24555566777777999999999999999864323322    


Q ss_pred             HHHHHHhcCccchHHHHHHHH---HhcCChhHHHHHHHHHHHcCCCCCHH-HHHHH----HHHHHhcCChhh---HHHHH
Q 036107          323 LIFILSKAVRFLIYNTMISSA---CVRSEEGNALKLRQKIEEDSCKPDCE-THARS----LKMCCHKKRMKD---GMLVL  391 (441)
Q Consensus       323 li~~~~~~g~~~~~~~li~~~---~~~g~~~~a~~~~~~m~~~g~~p~~~-t~~~l----i~~~~~~g~~~~---a~~~~  391 (441)
                                   +..++..+   ... ....|...+..+....+.|... -...+    +-...+.++...   ++.+-
T Consensus       158 -------------~~~~l~~i~~l~~~-~~~~a~~~ld~~l~~r~~~~~~~~~e~~vl~~~~~~~~~~~~~~~~~i~~l~  223 (278)
T PF08631_consen  158 -------------FDSILHHIKQLAEK-SPELAAFCLDYLLLNRFKSSEDQWLEKLVLTRVLLTTQSKDLSSSEKIESLE  223 (278)
T ss_pred             -------------HHHHHHHHHHHHhh-CcHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHcCCccccchhHHHHHH
Confidence                         44444444   222 2356777777776655565553 11111    112222222111   22222


Q ss_pred             HHHHHHHH-CCCCCCHHHHHHHHHH-------HHhcCCccHHHHHHHH
Q 036107          392 NLMREMLS-KGIVPQESTHKMLAEE-------LEKKSLGNAKERIDEL  431 (441)
Q Consensus       392 ~~~~~m~~-~~~~p~~~~~~~ll~~-------~~~~g~~~~a~~~~~~  431 (441)
                      +++....+ .+.+.+..+-.++...       +.+++++++|.++++.
T Consensus       224 ~~~~~v~~~~~~~ls~~~~~a~~~LLW~~~~~~~~~k~y~~A~~w~~~  271 (278)
T PF08631_consen  224 ELLSIVEHSLGKQLSAEAASAIHTLLWNKGKKHYKAKNYDEAIEWYEL  271 (278)
T ss_pred             HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHH
Confidence            23332222 2344444444444333       4567899999999884

It is also involved in sporulation [].

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=96.28  E-value=1.1  Score=42.96  Aligned_cols=240  Identities=15%  Similarity=0.049  Sum_probs=139.3

Q ss_pred             hHHHhhhhchhhHHHHHhhhcCchhhHHHHHHHHHhcCCChHHHHHHHhhhhhHhhhhcCCCCCC-HHHHHHHHHHHHcC
Q 036107           65 SWVESLKLNEQSRISSHALSEDHETDVDKVSEILRKRYPSPDKVVEALKCFCFTWAKTQTGYMHT-PETYNAMVEALGKS  143 (441)
Q Consensus        65 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~g~~p~-~~~y~~li~~~~~~  143 (441)
                      ++...|+++.+...+.....-.  |....+++-=..+|++.|++.+|++     .......+.|+ +..|+..-.++.-.
T Consensus        11 aa~s~~d~~~ai~~~t~ai~l~--p~nhvlySnrsaa~a~~~~~~~al~-----da~k~~~l~p~w~kgy~r~Gaa~~~l   83 (539)
T KOG0548|consen   11 AAFSSGDFETAIRLFTEAIMLS--PTNHVLYSNRSAAYASLGSYEKALK-----DATKTRRLNPDWAKGYSRKGAALFGL   83 (539)
T ss_pred             hhcccccHHHHHHHHHHHHccC--CCccchhcchHHHHHHHhhHHHHHH-----HHHHHHhcCCchhhHHHHhHHHHHhc
Confidence            4456677888877777666554  4443455555678999999999986     33445567788 46899999999999


Q ss_pred             CChhHHHHHHHHHHHhcCCCccHHHHHHHHhhcCHHHHHHHHHHHHhcCCHHHHHHHH------HHhhh----CCCCcHH
Q 036107          144 KKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVF------LKFKD----CISLSSQ  213 (441)
Q Consensus       144 ~~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~------~~~~~----~~~~~~~  213 (441)
                      |++++|+..|.+-.+..+.              +...++-+..++....   .+-+.|      ..+..    .......
T Consensus        84 g~~~eA~~ay~~GL~~d~~--------------n~~L~~gl~~a~~~~~---~~~~~~~~p~~~~~l~~~p~t~~~~~~~  146 (539)
T KOG0548|consen   84 GDYEEAILAYSEGLEKDPS--------------NKQLKTGLAQAYLEDY---AADQLFTKPYFHEKLANLPLTNYSLSDP  146 (539)
T ss_pred             ccHHHHHHHHHHHhhcCCc--------------hHHHHHhHHHhhhHHH---HhhhhccCcHHHHHhhcChhhhhhhccH
Confidence            9999999999998775422              5666777777661110   111112      11110    1112222


Q ss_pred             HHHHHHHHHHhcC-------CHHHHHHHHHHHh--------hCCC-------CC---------C-------------Hhh
Q 036107          214 IFDVLIHGWCKTR-------KSDYAQKAMKEMF--------QHGF-------SP---------D-------------GVS  249 (441)
Q Consensus       214 ~~~~li~~~~~~~-------~~~~a~~~~~~m~--------~~g~-------~p---------~-------------~~~  249 (441)
                      .|..++..+-+..       +.....+..-.+.        ..|+       .|         .             ..-
T Consensus       147 ~~~~~l~~~~~~p~~l~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~  226 (539)
T KOG0548|consen  147 AYVKILEIIQKNPTSLKLYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHK  226 (539)
T ss_pred             HHHHHHHHhhcCcHhhhcccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhH
Confidence            3444444432221       1111111111111        1111       11         0             112


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHh
Q 036107          250 YTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSK  329 (441)
Q Consensus       250 ~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~  329 (441)
                      ...+.++..+..++..|.+-+....+..  -+..-++..-.+|...|.+..+...-..-.+.|.. ...-|+.+-.++++
T Consensus       227 ek~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r  303 (539)
T KOG0548|consen  227 EKELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALAR  303 (539)
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHH
Confidence            4456777777888888888888887765  35555566667788888888887777766665532 22334444444444


Q ss_pred             cC
Q 036107          330 AV  331 (441)
Q Consensus       330 ~g  331 (441)
                      .|
T Consensus       304 ~g  305 (539)
T KOG0548|consen  304 LG  305 (539)
T ss_pred             hh
Confidence            33

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=96.27  E-value=1.1  Score=44.58  Aligned_cols=80  Identities=13%  Similarity=0.088  Sum_probs=41.7

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 036107          213 QIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHAL  292 (441)
Q Consensus       213 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~  292 (441)
                      ..|+.+-..++....|++|.+.|..-..      .   ...+.++.+..++++.+.+-+.+.+     |....-.+.+++
T Consensus       797 ~A~r~ig~~fa~~~~We~A~~yY~~~~~------~---e~~~ecly~le~f~~LE~la~~Lpe-----~s~llp~~a~mf  862 (1189)
T KOG2041|consen  797 DAFRNIGETFAEMMEWEEAAKYYSYCGD------T---ENQIECLYRLELFGELEVLARTLPE-----DSELLPVMADMF  862 (1189)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhccc------h---HhHHHHHHHHHhhhhHHHHHHhcCc-----ccchHHHHHHHH
Confidence            3466666666666666666666654321      1   2344555555555554444444322     333444555666


Q ss_pred             HhcCCHHHHHHHHH
Q 036107          293 EKAKQIYEALKVYE  306 (441)
Q Consensus       293 ~~~~~~~~a~~~~~  306 (441)
                      ...|.-++|.+.|-
T Consensus       863 ~svGMC~qAV~a~L  876 (1189)
T KOG2041|consen  863 TSVGMCDQAVEAYL  876 (1189)
T ss_pred             HhhchHHHHHHHHH
Confidence            66666666655443

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=96.27  E-value=0.027  Score=38.02  Aligned_cols=53  Identities=11%  Similarity=0.023  Sum_probs=24.5

Q ss_pred             HHHhcCCHHHHHHHHHHhhhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 036107          187 TLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMF  239 (441)
Q Consensus       187 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~  239 (441)
                      .+.+.|++++|.+.|+.+....+-+...+..+-.++...|++++|..+|++..
T Consensus         6 ~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~   58 (65)
T PF13432_consen    6 ALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERAL   58 (65)
T ss_dssp             HHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            34444555555555554433333344444444444555555555555554443

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=96.27  E-value=0.54  Score=42.67  Aligned_cols=153  Identities=8%  Similarity=-0.032  Sum_probs=80.2

Q ss_pred             CHHHHHHHHHHHHH----cCCCCC-HHHHHHHHHHHHhc-CCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCcc--
Q 036107          262 DFRKVDYTLKEMQE----KGCKPS-VITCTIVMHALEKA-KQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRF--  333 (441)
Q Consensus       262 ~~~~a~~l~~~m~~----~g~~p~-~~~~~~ll~~~~~~-~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~--  333 (441)
                      ++++|...+++..+    .|-... ..++..+-..|... |++++|.+.|++..+.               |...|..  
T Consensus        89 ~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~---------------y~~e~~~~~  153 (282)
T PF14938_consen   89 DPDEAIECYEKAIEIYREAGRFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAEL---------------YEQEGSPHS  153 (282)
T ss_dssp             THHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHH---------------HHHTT-HHH
T ss_pred             CHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH---------------HHHCCChhh
Confidence            55555555554432    121111 23444445555565 7788888777766542               1111111  


Q ss_pred             --chHHHHHHHHHhcCChhHHHHHHHHHHHcCC-----CCCHH-HHHHHHHHHHhcCChhhHHHHHHHHHHHHHC--CCC
Q 036107          334 --LIYNTMISSACVRSEEGNALKLRQKIEEDSC-----KPDCE-THARSLKMCCHKKRMKDGMLVLNLMREMLSK--GIV  403 (441)
Q Consensus       334 --~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~-----~p~~~-t~~~li~~~~~~g~~~~a~~~~~~~~~m~~~--~~~  403 (441)
                        .++..+...+.+.|++++|+++|++....-.     +++.. .|...+-++...|+...|.+   .+.+....  ++.
T Consensus       154 a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~---~~~~~~~~~~~F~  230 (282)
T PF14938_consen  154 AAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARK---ALERYCSQDPSFA  230 (282)
T ss_dssp             HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHH---HHHHHGTTSTTST
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHH---HHHHHHhhCCCCC
Confidence              3477788889999999999999999875432     22222 23333445556788888877   44444322  343


Q ss_pred             CC--HHHHHHHHHHHHhcCCccHHHHHHHHHH
Q 036107          404 PQ--ESTHKMLAEELEKKSLGNAKERIDELLT  433 (441)
Q Consensus       404 p~--~~~~~~ll~~~~~~g~~~~a~~~~~~m~  433 (441)
                      .+  ......|++++ +.|+.+...+......
T Consensus       231 ~s~E~~~~~~l~~A~-~~~D~e~f~~av~~~d  261 (282)
T PF14938_consen  231 SSREYKFLEDLLEAY-EEGDVEAFTEAVAEYD  261 (282)
T ss_dssp             TSHHHHHHHHHHHHH-HTT-CCCHHHHCHHHT
T ss_pred             CcHHHHHHHHHHHHH-HhCCHHHHHHHHHHHc
Confidence            33  33555556555 4455555444444433

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=96.23  E-value=0.78  Score=40.53  Aligned_cols=196  Identities=9%  Similarity=0.055  Sum_probs=105.8

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHhhCCCCCCHh-hH---HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 036107          218 LIHGWCKTRKSDYAQKAMKEMFQHGFSPDGV-SY---TCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALE  293 (441)
Q Consensus       218 li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~-~~---~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~  293 (441)
                      ....+.+.|++++|.+.|+++...-  |+.. .-   -.+..++.+.+++++|...+++..+....-...-|...+.+.+
T Consensus        38 ~A~~~~~~g~y~~Ai~~f~~l~~~y--P~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~  115 (243)
T PRK10866         38 TAQQKLQDGNWKQAITQLEALDNRY--PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLT  115 (243)
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHh
Confidence            3444566788888888888887642  3322 21   2455677788888888888888876532222334444444444


Q ss_pred             hcCCHHHHHHHHHHHhh-CCCCCCHHHHHHHHHHHHhcCccchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHH
Q 036107          294 KAKQIYEALKVYEKMKS-DDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHA  372 (441)
Q Consensus       294 ~~~~~~~a~~~~~~m~~-~g~~~~~~~~~~li~~~~~~g~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~  372 (441)
                      ....   ....|..... ....-|...-...+         ..+..+|.-|-...-..+|...+..+.+.   .-..- -
T Consensus       116 ~~~~---~~~~~~~~~~~~~~~rD~~~~~~A~---------~~~~~li~~yP~S~ya~~A~~rl~~l~~~---la~~e-~  179 (243)
T PRK10866        116 NMAL---DDSALQGFFGVDRSDRDPQHARAAF---------RDFSKLVRGYPNSQYTTDATKRLVFLKDR---LAKYE-L  179 (243)
T ss_pred             hhhc---chhhhhhccCCCccccCHHHHHHHH---------HHHHHHHHHCcCChhHHHHHHHHHHHHHH---HHHHH-H
Confidence            2100   0000000000 00000000000000         11333444444444445565544444321   01111 2


Q ss_pred             HHHHHHHhcCChhhHHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHH
Q 036107          373 RSLKMCCHKKRMKDGMLVLNLMREMLSK--GIVPQESTHKMLAEELEKKSLGNAKERIDELLTH  434 (441)
Q Consensus       373 ~li~~~~~~g~~~~a~~~~~~~~~m~~~--~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~  434 (441)
                      .+.+-|.+.|.+.-|..   .++.+.+.  +.+........+..+|.+.|..++|.++...+..
T Consensus       180 ~ia~~Y~~~~~y~AA~~---r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~~  240 (243)
T PRK10866        180 SVAEYYTKRGAYVAVVN---RVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIAA  240 (243)
T ss_pred             HHHHHHHHcCchHHHHH---HHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHhc
Confidence            45667888899888754   66666653  5556666888899999999999999998876643

>COG3898 Uncharacterized membrane-bound protein [Function unknown]

Probab=96.17  E-value=1.1  Score=41.53  Aligned_cols=267  Identities=12%  Similarity=0.076  Sum_probs=171.2

Q ss_pred             CCHHHHHHHHHHHH--cCCChhHHHHHHHHHHHhcCCCccHHHHHHHHhhcCHHHH----HHHHHHHHhcCCHHHHHHHH
Q 036107          128 HTPETYNAMVEALG--KSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAM----SVLMDTLVKRNSVAHAYKVF  201 (441)
Q Consensus       128 p~~~~y~~li~~~~--~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~----~~li~~~~~~g~~~~a~~~~  201 (441)
                      -|..-.-.++.+-.  -.|+++.|.+-|+.|..                  |+++-    ..|.-..-+.|..+-|...-
T Consensus       116 sDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~------------------dPEtRllGLRgLyleAqr~GareaAr~yA  177 (531)
T COG3898         116 SDQEPLIHLLEAQAALLEGDYEDARKKFEAMLD------------------DPETRLLGLRGLYLEAQRLGAREAARHYA  177 (531)
T ss_pred             ccchHHHHHHHHHHHHhcCchHHHHHHHHHHhc------------------ChHHHHHhHHHHHHHHHhcccHHHHHHHH
Confidence            34444444444333  35899999999999987                  33333    33344445678888888877


Q ss_pred             HHhhhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC-CCCCCHh--hHHHHHHHHHh---cCCHHHHHHHHHHHHH
Q 036107          202 LKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQH-GFSPDGV--SYTCFIEHYCR---EKDFRKVDYTLKEMQE  275 (441)
Q Consensus       202 ~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-g~~p~~~--~~~~li~~~~~---~g~~~~a~~l~~~m~~  275 (441)
                      +..-..-+--...+.+.+...+..|+|+.|+++.+.-++. -+.+++.  .-..|+.+-..   .-+...|...-.+-. 
T Consensus       178 e~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~-  256 (531)
T COG3898         178 ERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEAN-  256 (531)
T ss_pred             HHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHh-
Confidence            7764444455667888999999999999999999887653 3445542  22233333221   223445555444433 


Q ss_pred             cCCCCCHHHH-HHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCccchHHHHHHHHHhcCChhHHHH
Q 036107          276 KGCKPSVITC-TIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALK  354 (441)
Q Consensus       276 ~g~~p~~~~~-~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~~~li~~~~~~g~~~~a~~  354 (441)
                       .+.||..-- ..--.++.+.|+..++-.+++.+-+..-.|+..                    .+-.+.+.|  +.++.
T Consensus       257 -KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~ia--------------------~lY~~ar~g--dta~d  313 (531)
T COG3898         257 -KLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDIA--------------------LLYVRARSG--DTALD  313 (531)
T ss_pred             -hcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHHH--------------------HHHHHhcCC--CcHHH
Confidence             345554332 233467889999999999999999887677542                    112233444  45666


Q ss_pred             HHHHHHH-cCCCCCH-HHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-hcCCccHHHHHHHH
Q 036107          355 LRQKIEE-DSCKPDC-ETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELE-KKSLGNAKERIDEL  431 (441)
Q Consensus       355 ~~~~m~~-~g~~p~~-~t~~~li~~~~~~g~~~~a~~~~~~~~~m~~~~~~p~~~~~~~ll~~~~-~~g~~~~a~~~~~~  431 (441)
                      -+++.+. ..++||. ..-..+..+-...|++..|..--+...+     ..|....|..|.+.-. ..|+-.++..++..
T Consensus       314 RlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r-----~~pres~~lLlAdIeeAetGDqg~vR~wlAq  388 (531)
T COG3898         314 RLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAR-----EAPRESAYLLLADIEEAETGDQGKVRQWLAQ  388 (531)
T ss_pred             HHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhh-----hCchhhHHHHHHHHHhhccCchHHHHHHHHH
Confidence            6665543 2346654 4556667777788998888764444444     6789999998888775 45999999888877


Q ss_pred             HHHHhhhcCC
Q 036107          432 LTHATEQRTF  441 (441)
Q Consensus       432 m~~~~~~~~~  441 (441)
                      -.+.++.+-|
T Consensus       389 av~APrdPaW  398 (531)
T COG3898         389 AVKAPRDPAW  398 (531)
T ss_pred             HhcCCCCCcc
Confidence            6666655443

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=96.16  E-value=0.15  Score=41.04  Aligned_cols=88  Identities=7%  Similarity=-0.039  Sum_probs=57.5

Q ss_pred             HHHHhcCCHHHHHHHHHHHhhCCCCC-CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH
Q 036107          220 HGWCKTRKSDYAQKAMKEMFQHGFSP-DGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQI  298 (441)
Q Consensus       220 ~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~  298 (441)
                      .-+...|++++|.++|+.+...  .| +..-|-.|-.++-..|++.+|+..|........ -|...+-.+-.++...|+.
T Consensus        43 ~~ly~~G~l~~A~~~f~~L~~~--Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~-ddp~~~~~ag~c~L~lG~~  119 (157)
T PRK15363         43 MQLMEVKEFAGAARLFQLLTIY--DAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKI-DAPQAPWAAAECYLACDNV  119 (157)
T ss_pred             HHHHHCCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCchHHHHHHHHHHHcCCH
Confidence            3445667777777777777653  23 334445555566667777777777777766653 3566677777777777777


Q ss_pred             HHHHHHHHHHhh
Q 036107          299 YEALKVYEKMKS  310 (441)
Q Consensus       299 ~~a~~~~~~m~~  310 (441)
                      +.|++.|+....
T Consensus       120 ~~A~~aF~~Ai~  131 (157)
T PRK15363        120 CYAIKALKAVVR  131 (157)
T ss_pred             HHHHHHHHHHHH
Confidence            777777776655

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=96.11  E-value=0.25  Score=38.12  Aligned_cols=105  Identities=13%  Similarity=0.016  Sum_probs=56.2

Q ss_pred             HHHcCCChhHHHHHHHHHHHhcCCCccHHHHHHHHhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCC---cHHHH
Q 036107          139 ALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISL---SSQIF  215 (441)
Q Consensus       139 ~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~---~~~~~  215 (441)
                      ++-..|+.++|+.++++....|...+.           -...+-.+-+.+...|++++|+.+++......+-   +....
T Consensus        10 a~d~~G~~~~Ai~~Y~~Al~~gL~~~~-----------~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~   78 (120)
T PF12688_consen   10 AHDSLGREEEAIPLYRRALAAGLSGAD-----------RRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALR   78 (120)
T ss_pred             HHHhcCCHHHHHHHHHHHHHcCCCchH-----------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHH
Confidence            445567777777777777664411110           1234445666666777777777777665332211   22222


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHH
Q 036107          216 DVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYC  258 (441)
Q Consensus       216 ~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~  258 (441)
                      ..+--++...|+.++|.+++-....    ++...|.--|..|+
T Consensus        79 ~f~Al~L~~~gr~~eAl~~~l~~la----~~~~~y~ra~~~ya  117 (120)
T PF12688_consen   79 VFLALALYNLGRPKEALEWLLEALA----ETLPRYRRAIRFYA  117 (120)
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHH----HHHHHHHHHHHHHH
Confidence            2223355666777777776655543    34445555555444

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=96.10  E-value=0.54  Score=46.52  Aligned_cols=134  Identities=6%  Similarity=-0.067  Sum_probs=94.3

Q ss_pred             CHHHHHHHHHHHHhc-----CCHHHHHHHHHHhhhCCCCcHHHHHHHHHHHHhcC--------CHHHHHHHHHHHhhC-C
Q 036107          177 DTRAMSVLMDTLVKR-----NSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTR--------KSDYAQKAMKEMFQH-G  242 (441)
Q Consensus       177 ~~~~~~~li~~~~~~-----g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~--------~~~~a~~~~~~m~~~-g  242 (441)
                      +...|...+.+....     +..+.|.++|++.-..-+-....|..+..++....        ++..+.+..++.... .
T Consensus       336 ~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~  415 (517)
T PRK10153        336 QGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPE  415 (517)
T ss_pred             CHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhccc
Confidence            778899988886543     33778999998875433444555555544443221        233444444443332 2


Q ss_pred             CCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCC
Q 036107          243 FSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDD  312 (441)
Q Consensus       243 ~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g  312 (441)
                      ...+...|.++--.....|++++|...+++..+.+  |+...|..+-..+...|+.++|.+.+++....+
T Consensus       416 ~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~  483 (517)
T PRK10153        416 LNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFNLR  483 (517)
T ss_pred             CcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence            33455677777666667899999999999998865  688899999999999999999999999987753

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=96.00  E-value=0.38  Score=37.14  Aligned_cols=52  Identities=12%  Similarity=-0.007  Sum_probs=23.1

Q ss_pred             hcCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 036107          259 REKDFRKVDYTLKEMQEKGCKPS--VITCTIVMHALEKAKQIYEALKVYEKMKS  310 (441)
Q Consensus       259 ~~g~~~~a~~l~~~m~~~g~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~m~~  310 (441)
                      ..|+.++|..+|++-.+.|....  ...+..+-.++...|++++|..++++...
T Consensus        13 ~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~   66 (120)
T PF12688_consen   13 SLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALE   66 (120)
T ss_pred             hcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            34445555555555444443322  12233333444444555555555544443

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=95.93  E-value=0.048  Score=36.79  Aligned_cols=52  Identities=13%  Similarity=0.165  Sum_probs=24.1

Q ss_pred             HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 036107          257 YCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMK  309 (441)
Q Consensus       257 ~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~  309 (441)
                      +.+.|++++|.+.|++..+.. +-+...+..+-.++.+.|++++|...|++..
T Consensus         7 ~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~   58 (65)
T PF13432_consen    7 LYQQGDYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQGRYDEALAYYERAL   58 (65)
T ss_dssp             HHHCTHHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            444455555555555554443 1134444444444555555555555555444

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=95.93  E-value=0.69  Score=37.30  Aligned_cols=92  Identities=14%  Similarity=-0.060  Sum_probs=66.7

Q ss_pred             HHHHHHhcCCHHHHHHHHHHhhhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCH
Q 036107          184 LMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDF  263 (441)
Q Consensus       184 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~  263 (441)
                      +-.-+...|++++|..+|+.+-.--+.+..-|-.|--++-..|++++|...|........ -|+..+-.+-.++...|+.
T Consensus        41 ~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~-ddp~~~~~ag~c~L~lG~~  119 (157)
T PRK15363         41 YAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKI-DAPQAPWAAAECYLACDNV  119 (157)
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCchHHHHHHHHHHHcCCH
Confidence            334456678888888888877443345555677777777778888888888888877553 3567777777788888888


Q ss_pred             HHHHHHHHHHHHc
Q 036107          264 RKVDYTLKEMQEK  276 (441)
Q Consensus       264 ~~a~~l~~~m~~~  276 (441)
                      +.|.+.|+.....
T Consensus       120 ~~A~~aF~~Ai~~  132 (157)
T PRK15363        120 CYAIKALKAVVRI  132 (157)
T ss_pred             HHHHHHHHHHHHH
Confidence            8888888876554

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=95.88  E-value=1.3  Score=40.07  Aligned_cols=210  Identities=10%  Similarity=0.097  Sum_probs=122.6

Q ss_pred             HHHHHHHHHHHcCCChhHHHHHHHHHHHh----c---CCCccHHHHHHHHhhcCHHHHHHHHHHHHhcCCHHH---HHHH
Q 036107          131 ETYNAMVEALGKSKKFGLMWELVKEIDEL----S---NGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAH---AYKV  200 (441)
Q Consensus       131 ~~y~~li~~~~~~~~~~~a~~l~~~m~~~----~---~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~---a~~~  200 (441)
                      ..||.-...+.+..+++.|...+++..+.    +   ...+..       ...-..+...++.+|...+..+.   |..+
T Consensus        37 ~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~-------~elr~~iL~~La~~~l~~~~~~~~~ka~~~  109 (278)
T PF08631_consen   37 VCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDG-------SELRLSILRLLANAYLEWDTYESVEKALNA  109 (278)
T ss_pred             HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcH-------HHHHHHHHHHHHHHHHcCCChHHHHHHHHH
Confidence            45666666666655777777666665543    1   111111       11134677888888888887764   4555


Q ss_pred             HHHhhhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHH---HhcCCHHHHHHHHHHHHHcC
Q 036107          201 FLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHY---CREKDFRKVDYTLKEMQEKG  277 (441)
Q Consensus       201 ~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~---~~~g~~~~a~~l~~~m~~~g  277 (441)
                      .+.+.+...-...++-.-|..+.+.++.+.+.+++.+|... +.-....+..+++.+   ... ....|...+..+....
T Consensus       110 l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~-~~~~e~~~~~~l~~i~~l~~~-~~~~a~~~ld~~l~~r  187 (278)
T PF08631_consen  110 LRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRS-VDHSESNFDSILHHIKQLAEK-SPELAAFCLDYLLLNR  187 (278)
T ss_pred             HHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHh-cccccchHHHHHHHHHHHHhh-CcHHHHHHHHHHHHHH
Confidence            55565444434555666677777799999999999999975 222345566666655   333 3456777777766555


Q ss_pred             CCCCHH-HH-HHHHHH---HHhcC------CHHHHHHHHHHHhh-CCCCCCHHHHHHHHHHHHhcCccchHHHHHHHHHh
Q 036107          278 CKPSVI-TC-TIVMHA---LEKAK------QIYEALKVYEKMKS-DDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACV  345 (441)
Q Consensus       278 ~~p~~~-~~-~~ll~~---~~~~~------~~~~a~~~~~~m~~-~g~~~~~~~~~~li~~~~~~g~~~~~~~li~~~~~  345 (441)
                      +.|... .. ..++.-   ..+.+      +++...++++...+ .+.+.+..+-.++...+        ||. ...+.+
T Consensus       188 ~~~~~~~~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~~~ls~~~~~a~~~LL--------W~~-~~~~~~  258 (278)
T PF08631_consen  188 FKSSEDQWLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEHSLGKQLSAEAASAIHTLL--------WNK-GKKHYK  258 (278)
T ss_pred             hCCChhHHHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHH--------HHH-HHHHHh
Confidence            555543 11 111111   11111      24555566664443 44455666655555443        444 334567


Q ss_pred             cCChhHHHHHHHH
Q 036107          346 RSEEGNALKLRQK  358 (441)
Q Consensus       346 ~g~~~~a~~~~~~  358 (441)
                      .+++++|.+.|+-
T Consensus       259 ~k~y~~A~~w~~~  271 (278)
T PF08631_consen  259 AKNYDEAIEWYEL  271 (278)
T ss_pred             hcCHHHHHHHHHH
Confidence            8899999998874

It is also involved in sporulation [].

>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus

Probab=95.76  E-value=0.68  Score=35.87  Aligned_cols=134  Identities=12%  Similarity=0.101  Sum_probs=71.0

Q ss_pred             cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHH---HHHHHHHHHHhcCcc-ch
Q 036107          260 EKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTS---FYSSLIFILSKAVRF-LI  335 (441)
Q Consensus       260 ~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~---~~~~li~~~~~~g~~-~~  335 (441)
                      .|..++..++..+....   .+..-||.+|--....-+-+-   +|+.+..-|--.|..   -...++..|.+.|.. ..
T Consensus        15 dG~V~qGveii~k~v~S---sni~E~NWvICNiiDaa~C~y---vv~~LdsIGkiFDis~C~NlKrVi~C~~~~n~~se~   88 (161)
T PF09205_consen   15 DGDVKQGVEIIEKTVNS---SNIKEYNWVICNIIDAADCDY---VVETLDSIGKIFDISKCGNLKRVIECYAKRNKLSEY   88 (161)
T ss_dssp             TT-HHHHHHHHHHHHHH---S-HHHHTHHHHHHHHH--HHH---HHHHHHHHGGGS-GGG-S-THHHHHHHHHTT---HH
T ss_pred             hchHHHHHHHHHHHcCc---CCccccceeeeecchhhchhH---HHHHHHHHhhhcCchhhcchHHHHHHHHHhcchHHH
Confidence            45556666666655443   233344444433332222222   233332222222222   123345555555544 33


Q ss_pred             HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCC
Q 036107          336 YNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIV  403 (441)
Q Consensus       336 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~~~~m~~~~~~  403 (441)
                      ....+......|+-+.-.+++.++.. .-+|++...-.+-.+|.+.|+..++.+   ++.+..++|++
T Consensus        89 vD~ALd~lv~~~kkDqLdki~~~l~k-n~~~~p~~L~kia~Ay~klg~~r~~~e---ll~~ACekG~k  152 (161)
T PF09205_consen   89 VDLALDILVKQGKKDQLDKIYNELKK-NEEINPEFLVKIANAYKKLGNTREANE---LLKEACEKGLK  152 (161)
T ss_dssp             HHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHH---HHHHHHHTT-H
T ss_pred             HHHHHHHHHHhccHHHHHHHHHHHhh-ccCCCHHHHHHHHHHHHHhcchhhHHH---HHHHHHHhchH
Confidence            56667888888888888888888765 337888888889999999999988866   77777777764

Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.

>KOG2796 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.75  E-value=0.33  Score=42.28  Aligned_cols=144  Identities=10%  Similarity=0.031  Sum_probs=102.7

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH---
Q 036107          214 IFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMH---  290 (441)
Q Consensus       214 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~---  290 (441)
                      +.+.++..+.-.|.+.-...++.+.++..-+.++.....+.+.-.+.||.+.|...|++..+..-+.|..+++.++.   
T Consensus       179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~  258 (366)
T KOG2796|consen  179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS  258 (366)
T ss_pred             HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence            45566677777788888899999999877677888888999999999999999999998877655566666665543   


Q ss_pred             --HHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCccchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCH
Q 036107          291 --ALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDC  368 (441)
Q Consensus       291 --~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~  368 (441)
                        .|.-.+++..|...|.+..+.+-. |...                -|.=.-+..-.|+..+|++.++.|++.  .|..
T Consensus       259 a~i~lg~nn~a~a~r~~~~i~~~D~~-~~~a----------------~NnKALcllYlg~l~DAiK~~e~~~~~--~P~~  319 (366)
T KOG2796|consen  259 AFLHLGQNNFAEAHRFFTEILRMDPR-NAVA----------------NNNKALCLLYLGKLKDALKQLEAMVQQ--DPRH  319 (366)
T ss_pred             hhheecccchHHHHHHHhhccccCCC-chhh----------------hchHHHHHHHHHHHHHHHHHHHHHhcc--CCcc
Confidence              345567888888888888765321 1111                233233334467889999999999865  5666


Q ss_pred             HHHHHHHH
Q 036107          369 ETHARSLK  376 (441)
Q Consensus       369 ~t~~~li~  376 (441)
                      .+-++++-
T Consensus       320 ~l~es~~~  327 (366)
T KOG2796|consen  320 YLHESVLF  327 (366)
T ss_pred             chhhhHHH
Confidence            65554443

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=95.72  E-value=0.6  Score=48.24  Aligned_cols=162  Identities=10%  Similarity=0.019  Sum_probs=110.6

Q ss_pred             HHHHHHHHHHHcCCChhHHHHHHHHHHHhcCCCccHHHHHHHHhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCC
Q 036107          131 ETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISL  210 (441)
Q Consensus       131 ~~y~~li~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~  210 (441)
                      ..|..|-..|+...+...|...|...-+.++.              |......+.+.|++..+++.|.++.-...+.-+.
T Consensus       493 paf~~LG~iYrd~~Dm~RA~kCf~KAFeLDat--------------daeaaaa~adtyae~~~we~a~~I~l~~~qka~a  558 (1238)
T KOG1127|consen  493 PAFAFLGQIYRDSDDMKRAKKCFDKAFELDAT--------------DAEAAAASADTYAEESTWEEAFEICLRAAQKAPA  558 (1238)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCch--------------hhhhHHHHHHHhhccccHHHHHHHHHHHhhhchH
Confidence            46777777777777777788888877775522              6788888889999999999998884333221111


Q ss_pred             cHHH--HHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 036107          211 SSQI--FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIV  288 (441)
Q Consensus       211 ~~~~--~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~l  288 (441)
                      -...  |-..--.|.+.++...|..-|+.-.+... -|...|..+..+|.+.|.+..|.++|.+....  .|+ .+|...
T Consensus       559 ~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dP-kD~n~W~gLGeAY~~sGry~~AlKvF~kAs~L--rP~-s~y~~f  634 (1238)
T KOG1127|consen  559 FACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDP-KDYNLWLGLGEAYPESGRYSHALKVFTKASLL--RPL-SKYGRF  634 (1238)
T ss_pred             HHHHhhhhhccccccCccchhhHHHHHHHHhcCCc-hhHHHHHHHHHHHHhcCceehHHHhhhhhHhc--CcH-hHHHHH
Confidence            1112  22233456677888888888888776432 36788889999999999999999999887663  343 233332


Q ss_pred             HH--HHHhcCCHHHHHHHHHHHhh
Q 036107          289 MH--ALEKAKQIYEALKVYEKMKS  310 (441)
Q Consensus       289 l~--~~~~~~~~~~a~~~~~~m~~  310 (441)
                      -.  .-+..|.+.++...+.....
T Consensus       635 k~A~~ecd~GkYkeald~l~~ii~  658 (1238)
T KOG1127|consen  635 KEAVMECDNGKYKEALDALGLIIY  658 (1238)
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHHH
Confidence            22  24567888888888877644

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=95.72  E-value=0.24  Score=44.20  Aligned_cols=98  Identities=11%  Similarity=0.068  Sum_probs=70.7

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCH----hhHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCCCHHHH
Q 036107          212 SQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDG----VSYTCFIEHYCREKDFRKVDYTLKEMQEKG--CKPSVITC  285 (441)
Q Consensus       212 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~----~~~~~li~~~~~~g~~~~a~~l~~~m~~~g--~~p~~~~~  285 (441)
                      ...|...+..+.+.|++++|...|+.+.+.-  |+.    ..+-.+-..|...|++++|...|+.+.+.-  -+.....+
T Consensus       143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~y--P~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl  220 (263)
T PRK10803        143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKKY--PDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAM  220 (263)
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC--cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHH
Confidence            3446666666667788999988888888642  443    466777888888899999999999887642  11123445


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHhhC
Q 036107          286 TIVMHALEKAKQIYEALKVYEKMKSD  311 (441)
Q Consensus       286 ~~ll~~~~~~~~~~~a~~~~~~m~~~  311 (441)
                      -.+...+...|+.++|..+|+...+.
T Consensus       221 ~klg~~~~~~g~~~~A~~~~~~vi~~  246 (263)
T PRK10803        221 FKVGVIMQDKGDTAKAKAVYQQVIKK  246 (263)
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            55566677889999999999888775

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=95.69  E-value=0.25  Score=44.08  Aligned_cols=99  Identities=9%  Similarity=-0.026  Sum_probs=53.4

Q ss_pred             HHHHHHHHHHHcCCChhHHHHHHHHHHHhcCCCccHHHHHHHHhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCC
Q 036107          131 ETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISL  210 (441)
Q Consensus       131 ~~y~~li~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~  210 (441)
                      ..|...+..+.+.|++++|...|+.+.+.-|..+           ..+.++-.+-..|...|++++|...|..+-...+-
T Consensus       144 ~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~-----------~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~  212 (263)
T PRK10803        144 TDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDST-----------YQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPK  212 (263)
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCc-----------chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC
Confidence            3555555555556677777777777666432211           12345555666666666666666666666332222


Q ss_pred             c---HHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 036107          211 S---SQIFDVLIHGWCKTRKSDYAQKAMKEMFQ  240 (441)
Q Consensus       211 ~---~~~~~~li~~~~~~~~~~~a~~~~~~m~~  240 (441)
                      +   ...+-.+...+...|+.++|.++|++..+
T Consensus       213 s~~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~  245 (263)
T PRK10803        213 SPKAADAMFKVGVIMQDKGDTAKAKAVYQQVIK  245 (263)
T ss_pred             CcchhHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            2   22222334445556666666666666654

>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]

Probab=95.63  E-value=0.67  Score=43.59  Aligned_cols=145  Identities=17%  Similarity=0.149  Sum_probs=103.2

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCC-CCCCHhhHHHHHHHHHhcCCHHHHHHHHHH-HHHcCCCCCHHHH-HHH
Q 036107          212 SQIFDVLIHGWCKTRKSDYAQKAMKEMFQHG-FSPDGVSYTCFIEHYCREKDFRKVDYTLKE-MQEKGCKPSVITC-TIV  288 (441)
Q Consensus       212 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g-~~p~~~~~~~li~~~~~~g~~~~a~~l~~~-m~~~g~~p~~~~~-~~l  288 (441)
                      ..+|...|+.-.+...++.|..+|-+.++.| +.+++..++++|..++. |+..-|..+|+- |+..   ||...| +-.
T Consensus       397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~-~d~~ta~~ifelGl~~f---~d~~~y~~ky  472 (660)
T COG5107         397 TFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYAT-GDRATAYNIFELGLLKF---PDSTLYKEKY  472 (660)
T ss_pred             hhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHhc-CCcchHHHHHHHHHHhC---CCchHHHHHH
Confidence            4468888888888889999999999999998 67889999999997775 788899999987 3443   444443 455


Q ss_pred             HHHHHhcCCHHHHHHHHHHHhhCCCCCC--HHHHHHHHHHHHhcCccchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC
Q 036107          289 MHALEKAKQIYEALKVYEKMKSDDCLTD--TSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKP  366 (441)
Q Consensus       289 l~~~~~~~~~~~a~~~~~~m~~~g~~~~--~~~~~~li~~~~~~g~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p  366 (441)
                      +.-+...++-+.|..+|+...++- ..+  .                ..|..||.--...|++..|..+=++|.+.  -|
T Consensus       473 l~fLi~inde~naraLFetsv~r~-~~~q~k----------------~iy~kmi~YEs~~G~lN~v~sLe~rf~e~--~p  533 (660)
T COG5107         473 LLFLIRINDEENARALFETSVERL-EKTQLK----------------RIYDKMIEYESMVGSLNNVYSLEERFREL--VP  533 (660)
T ss_pred             HHHHHHhCcHHHHHHHHHHhHHHH-HHhhhh----------------HHHHHHHHHHHhhcchHHHHhHHHHHHHH--cC
Confidence            667788899999999999654421 111  1                23777777777777777777776666543  45


Q ss_pred             CHHHHHHHHHHHH
Q 036107          367 DCETHARSLKMCC  379 (441)
Q Consensus       367 ~~~t~~~li~~~~  379 (441)
                      -..+...+.+-|.
T Consensus       534 Qen~~evF~Sry~  546 (660)
T COG5107         534 QENLIEVFTSRYA  546 (660)
T ss_pred             cHhHHHHHHHHHh
Confidence            5545555555444

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=95.60  E-value=0.085  Score=36.04  Aligned_cols=63  Identities=14%  Similarity=0.076  Sum_probs=35.7

Q ss_pred             HhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHhh
Q 036107          247 GVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAK-QIYEALKVYEKMKS  310 (441)
Q Consensus       247 ~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~-~~~~a~~~~~~m~~  310 (441)
                      ..+|..+-..+...|++++|+..|++..+... -+...|..+-.++.+.| ++++|.+.++...+
T Consensus         3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p-~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~   66 (69)
T PF13414_consen    3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDP-NNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK   66 (69)
T ss_dssp             HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHST-THHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence            34555555566666666666666666555432 24555555666666666 46666666655443

...

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=95.59  E-value=1.8  Score=39.45  Aligned_cols=234  Identities=9%  Similarity=0.046  Sum_probs=147.9

Q ss_pred             HHHHcCCChhHHHHHHHHHHHhcCCC-ccHHHHHHHHhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcHHHHH
Q 036107          138 EALGKSKKFGLMWELVKEIDELSNGY-VSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFD  216 (441)
Q Consensus       138 ~~~~~~~~~~~a~~l~~~m~~~~~~~-~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~  216 (441)
                      ..+.+.|.++.|..=|+......+.. ......+.+...-.-......+..+.-.|+...|++....+-+-.+++...|.
T Consensus       114 ~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~~  193 (504)
T KOG0624|consen  114 VVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASLRQ  193 (504)
T ss_pred             hhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHHHH
Confidence            35778999999999999988755322 12222222222112334445566667789999999999888777788999999


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH----HHHH----
Q 036107          217 VLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVIT----CTIV----  288 (441)
Q Consensus       217 ~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~----~~~l----  288 (441)
                      .--.+|...|.+..|..=+....+.. .-++.++--+-.-+...|+.+.++...++-.+.  .||...    |..|    
T Consensus       194 ~Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKl--dpdHK~Cf~~YKklkKv~  270 (504)
T KOG0624|consen  194 ARAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECLKL--DPDHKLCFPFYKKLKKVV  270 (504)
T ss_pred             HHHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHcc--CcchhhHHHHHHHHHHHH
Confidence            99999999999999887665554432 135566666667778889988888888887664  344322    1111    


Q ss_pred             -----HHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCccchHHHHHHHHHhcCChhHHHHHHHHHHHcC
Q 036107          289 -----MHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDS  363 (441)
Q Consensus       289 -----l~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g  363 (441)
                           +....+.+++.++..-.+...+.........|             ..+..+=.+|...|++.+|+..-.+..+  
T Consensus       271 K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~-------------~~~r~~c~C~~~d~~~~eAiqqC~evL~--  335 (504)
T KOG0624|consen  271 KSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRY-------------NGFRVLCTCYREDEQFGEAIQQCKEVLD--  335 (504)
T ss_pred             HHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceee-------------eeeheeeecccccCCHHHHHHHHHHHHh--
Confidence                 12234556666776666666554332122221             2245555667778888888888777764  


Q ss_pred             CCCC-HHHHHHHHHHHHhcCChhhHHH
Q 036107          364 CKPD-CETHARSLKMCCHKKRMKDGML  389 (441)
Q Consensus       364 ~~p~-~~t~~~li~~~~~~g~~~~a~~  389 (441)
                      +.|| ..++.-=..+|.-...++.|..
T Consensus       336 ~d~~dv~~l~dRAeA~l~dE~YD~AI~  362 (504)
T KOG0624|consen  336 IDPDDVQVLCDRAEAYLGDEMYDDAIH  362 (504)
T ss_pred             cCchHHHHHHHHHHHHhhhHHHHHHHH
Confidence            4565 4455544555555555555543

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=95.59  E-value=0.51  Score=45.61  Aligned_cols=157  Identities=9%  Similarity=0.025  Sum_probs=106.8

Q ss_pred             HHcCCChhHHHHHHHHHHHhcCCCccHHHHHHHHhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcHHHHHHHH
Q 036107          140 LGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLI  219 (441)
Q Consensus       140 ~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li  219 (441)
                      ..-.++++.+.++.+.-.-    .|          ..+..-.+.+++-+-+.|-.+.|+++...-+           .-.
T Consensus       271 av~~~d~~~v~~~i~~~~l----l~----------~i~~~~~~~i~~fL~~~G~~e~AL~~~~D~~-----------~rF  325 (443)
T PF04053_consen  271 AVLRGDFEEVLRMIAASNL----LP----------NIPKDQGQSIARFLEKKGYPELALQFVTDPD-----------HRF  325 (443)
T ss_dssp             HHHTT-HHH-----HHHHT----GG----------G--HHHHHHHHHHHHHTT-HHHHHHHSS-HH-----------HHH
T ss_pred             HHHcCChhhhhhhhhhhhh----cc----------cCChhHHHHHHHHHHHCCCHHHHHhhcCChH-----------HHh
Confidence            3446788887777642221    11          1145668889999999999999998763321           233


Q ss_pred             HHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHH
Q 036107          220 HGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIY  299 (441)
Q Consensus       220 ~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~  299 (441)
                      ....+.|+++.|.++-++.      .+...|..|-+.+.+.|+++-|++.|.+..+         |..|+--|.-.|+.+
T Consensus       326 eLAl~lg~L~~A~~~a~~~------~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~  390 (443)
T PF04053_consen  326 ELALQLGNLDIALEIAKEL------DDPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDRE  390 (443)
T ss_dssp             HHHHHCT-HHHHHHHCCCC------STHHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HH
T ss_pred             HHHHhcCCHHHHHHHHHhc------CcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHH
Confidence            4456789999998877654      4778999999999999999999999998654         567777788889998


Q ss_pred             HHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCccchHHHHHHHHHhcCChhHHHHHHHH
Q 036107          300 EALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQK  358 (441)
Q Consensus       300 ~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~~~li~~~~~~g~~~~a~~~~~~  358 (441)
                      ...++.+.....|-                      +|....++...|+.++..+++.+
T Consensus       391 ~L~kl~~~a~~~~~----------------------~n~af~~~~~lgd~~~cv~lL~~  427 (443)
T PF04053_consen  391 KLSKLAKIAEERGD----------------------INIAFQAALLLGDVEECVDLLIE  427 (443)
T ss_dssp             HHHHHHHHHHHTT-----------------------HHHHHHHHHHHT-HHHHHHHHHH
T ss_pred             HHHHHHHHHHHccC----------------------HHHHHHHHHHcCCHHHHHHHHHH
Confidence            88888888777763                      77777777778888887777654

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus

Probab=95.56  E-value=0.82  Score=35.43  Aligned_cols=139  Identities=7%  Similarity=0.016  Sum_probs=73.7

Q ss_pred             cCCChhHHHHHHHHHHHhcCCCccHHHHHHHHhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcHHHHHHHHHH
Q 036107          142 KSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHG  221 (441)
Q Consensus       142 ~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~  221 (441)
                      -.|..++-.++..+.....                +..-+|-+|--....-+-+-..++++.+.+-+..+          
T Consensus        14 ldG~V~qGveii~k~v~Ss----------------ni~E~NWvICNiiDaa~C~yvv~~LdsIGkiFDis----------   67 (161)
T PF09205_consen   14 LDGDVKQGVEIIEKTVNSS----------------NIKEYNWVICNIIDAADCDYVVETLDSIGKIFDIS----------   67 (161)
T ss_dssp             HTT-HHHHHHHHHHHHHHS-----------------HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS-GG----------
T ss_pred             HhchHHHHHHHHHHHcCcC----------------CccccceeeeecchhhchhHHHHHHHHHhhhcCch----------
Confidence            3466777777777766654                44444544444444445455555555553322222          


Q ss_pred             HHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 036107          222 WCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEA  301 (441)
Q Consensus       222 ~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a  301 (441)
                        .+|++.....-+-.+-     .+..-....++...+.|+-|+-.+++.++.+ +-.+++.....+-.||.+.|+..++
T Consensus        68 --~C~NlKrVi~C~~~~n-----~~se~vD~ALd~lv~~~kkDqLdki~~~l~k-n~~~~p~~L~kia~Ay~klg~~r~~  139 (161)
T PF09205_consen   68 --KCGNLKRVIECYAKRN-----KLSEYVDLALDILVKQGKKDQLDKIYNELKK-NEEINPEFLVKIANAYKKLGNTREA  139 (161)
T ss_dssp             --G-S-THHHHHHHHHTT--------HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHH
T ss_pred             --hhcchHHHHHHHHHhc-----chHHHHHHHHHHHHHhccHHHHHHHHHHHhh-ccCCCHHHHHHHHHHHHHhcchhhH
Confidence              1233333333332221     1333445566777778888888888888765 3346777777788888888888888


Q ss_pred             HHHHHHHhhCCCC
Q 036107          302 LKVYEKMKSDDCL  314 (441)
Q Consensus       302 ~~~~~~m~~~g~~  314 (441)
                      .+++.+.-+.|++
T Consensus       140 ~ell~~ACekG~k  152 (161)
T PF09205_consen  140 NELLKEACEKGLK  152 (161)
T ss_dssp             HHHHHHHHHTT-H
T ss_pred             HHHHHHHHHhchH
Confidence            8888888777764

Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=95.42  E-value=2  Score=39.07  Aligned_cols=305  Identities=12%  Similarity=0.055  Sum_probs=185.8

Q ss_pred             hcCCChHHHHHHHhhhhhHhhhhcCCCCCCHHHHHHHH---HHHHcCCChhHHHHHHHHHHHhcCCCccHHHHHHHHhhc
Q 036107          100 KRYPSPDKVVEALKCFCFTWAKTQTGYMHTPETYNAMV---EALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRL  176 (441)
Q Consensus       100 ~~~~~~g~~~~A~~~~~~~~~~~~~g~~p~~~~y~~li---~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~  176 (441)
                      +.+.-.|.+.+|+.-|+-.-+       -|+..|-++.   ..|.-.|+...|+.=|....+..+.+.            
T Consensus        46 k~lla~~Q~sDALt~yHaAve-------~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~------------  106 (504)
T KOG0624|consen   46 KELLARGQLSDALTHYHAAVE-------GDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFM------------  106 (504)
T ss_pred             HHHHHhhhHHHHHHHHHHHHc-------CCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHH------------
Confidence            344456778888887753322       2555555543   456777888888887877777442221            


Q ss_pred             CHHHHHH-HHHHHHhcCCHHHHHHHHHHhhhC-------------CCCcHHHHH--HHHHHHHhcCCHHHHHHHHHHHhh
Q 036107          177 DTRAMSV-LMDTLVKRNSVAHAYKVFLKFKDC-------------ISLSSQIFD--VLIHGWCKTRKSDYAQKAMKEMFQ  240 (441)
Q Consensus       177 ~~~~~~~-li~~~~~~g~~~~a~~~~~~~~~~-------------~~~~~~~~~--~li~~~~~~~~~~~a~~~~~~m~~  240 (441)
                         .-.. --..+.+.|.+++|..=|+.+-+.             ..+....++  ..+..+.-.|+...|......+.+
T Consensus       107 ---~ARiQRg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llE  183 (504)
T KOG0624|consen  107 ---AARIQRGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLE  183 (504)
T ss_pred             ---HHHHHhchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHh
Confidence               1111 123567899999999999887321             111112222  234456678899999999999887


Q ss_pred             CCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHH
Q 036107          241 HGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFY  320 (441)
Q Consensus       241 ~g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~  320 (441)
                      - .+.|...|..--.+|...|++..|+.=++...+..-. +..++--+-..+...|+.+.+.....+..+.  .||...+
T Consensus       184 i-~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~D-nTe~~ykis~L~Y~vgd~~~sL~~iRECLKl--dpdHK~C  259 (504)
T KOG0624|consen  184 I-QPWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQD-NTEGHYKISQLLYTVGDAENSLKEIRECLKL--DPDHKLC  259 (504)
T ss_pred             c-CcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccc-chHHHHHHHHHHHhhhhHHHHHHHHHHHHcc--CcchhhH
Confidence            4 2458888999999999999999998877776655333 4556666677788899999988888877764  4444321


Q ss_pred             HHHHHHHHhcCccchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHH---HHHHHHHHHHhcCChhhHHHHHHHHHHH
Q 036107          321 SSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCE---THARSLKMCCHKKRMKDGMLVLNLMREM  397 (441)
Q Consensus       321 ~~li~~~~~~g~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~---t~~~li~~~~~~g~~~~a~~~~~~~~~m  397 (441)
                      -..-.   +..+++-----+......+++-++++-.+...+..-....+   .+..+-.++...|++.+|.+   ...+.
T Consensus       260 f~~YK---klkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiq---qC~ev  333 (504)
T KOG0624|consen  260 FPFYK---KLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQ---QCKEV  333 (504)
T ss_pred             HHHHH---HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHH---HHHHH
Confidence            11111   11110000111234456677777777777765443221222   34445556667788888866   44443


Q ss_pred             HHCCCCCC-HHHHHHHHHHHHhcCCccHHHHHHHHHHHHhhh
Q 036107          398 LSKGIVPQ-ESTHKMLAEELEKKSLGNAKERIDELLTHATEQ  438 (441)
Q Consensus       398 ~~~~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~  438 (441)
                      .  .+.|| ..++---..+|.-...++.|..=++.-...+++
T Consensus       334 L--~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~s  373 (504)
T KOG0624|consen  334 L--DIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNES  373 (504)
T ss_pred             H--hcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcc
Confidence            2  45665 556666666666666667666666655544443

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=95.31  E-value=1.5  Score=39.16  Aligned_cols=93  Identities=13%  Similarity=0.060  Sum_probs=45.7

Q ss_pred             HhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 036107          223 CKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEAL  302 (441)
Q Consensus       223 ~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~  302 (441)
                      .+.+++.+|+..|.+..+.. +-|.+-|..--.+|.+.|.++.|.+=.+.-....-. -..+|..|-.+|...|++++|.
T Consensus        92 m~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~-yskay~RLG~A~~~~gk~~~A~  169 (304)
T KOG0553|consen   92 MKNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPH-YSKAYGRLGLAYLALGKYEEAI  169 (304)
T ss_pred             HHhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChH-HHHHHHHHHHHHHccCcHHHHH
Confidence            34555555555555555421 123344444555555555555555544444332110 1345555555566666666665


Q ss_pred             HHHHHHhhCCCCCCHHH
Q 036107          303 KVYEKMKSDDCLTDTSF  319 (441)
Q Consensus       303 ~~~~~m~~~g~~~~~~~  319 (441)
                      +.|+...+  +.|+..+
T Consensus       170 ~aykKaLe--ldP~Ne~  184 (304)
T KOG0553|consen  170 EAYKKALE--LDPDNES  184 (304)
T ss_pred             HHHHhhhc--cCCCcHH
Confidence            55555544  2444443

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=95.29  E-value=0.11  Score=35.43  Aligned_cols=60  Identities=13%  Similarity=0.057  Sum_probs=28.0

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcHHHHHHHHHHHHhcC-CHHHHHHHHHHH
Q 036107          179 RAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTR-KSDYAQKAMKEM  238 (441)
Q Consensus       179 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~-~~~~a~~~~~~m  238 (441)
                      .+|..+-..+.+.|++++|+..|++.-+-.+-+...|..+-.+|.+.| ++++|++.|++.
T Consensus         4 ~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~a   64 (69)
T PF13414_consen    4 EAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKA   64 (69)
T ss_dssp             HHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHH
Confidence            344444444455555555555554442222334444444444455554 355555544443

...

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=95.23  E-value=0.91  Score=44.45  Aligned_cols=171  Identities=11%  Similarity=0.025  Sum_probs=112.5

Q ss_pred             HHHHHHHHHHHcCCChhHHHHHHHHHHHhcCCCccHHHHHHHHhhcCHHHHHHHHHHHHh----cCCHHHHHHHHHHhhh
Q 036107          131 ETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVK----RNSVAHAYKVFLKFKD  206 (441)
Q Consensus       131 ~~y~~li~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~  206 (441)
                      .....+++..+=.|+-+..++++.+-.+.+ +.-..-.      ..-.-.|+.++..++.    ....+.|.++++.+..
T Consensus       189 p~~~kll~~vGF~gdR~~GL~~L~~~~~~~-~i~~~la------~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~  261 (468)
T PF10300_consen  189 PKVLKLLSFVGFSGDRELGLRLLWEASKSE-NIRSPLA------ALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLK  261 (468)
T ss_pred             HHHHHHHhhcCcCCcHHHHHHHHHHHhccC-CcchHHH------HHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHH
Confidence            446667777788899999999998876644 3221111      1123456665555543    5678899999999865


Q ss_pred             CCCCcHHHHHHHH-HHHHhcCCHHHHHHHHHHHhhCC--C-CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH
Q 036107          207 CISLSSQIFDVLI-HGWCKTRKSDYAQKAMKEMFQHG--F-SPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSV  282 (441)
Q Consensus       207 ~~~~~~~~~~~li-~~~~~~~~~~~a~~~~~~m~~~g--~-~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~  282 (441)
                      .. |+...|...- +.+...|++++|.+.|++.....  . +.....+--+.-.+.-..+|++|...|..+.+..-. +.
T Consensus       262 ~y-P~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~W-Sk  339 (468)
T PF10300_consen  262 RY-PNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKW-SK  339 (468)
T ss_pred             hC-CCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcccc-HH
Confidence            44 5555555443 56677899999999999765311  1 112234445556677789999999999999886443 33


Q ss_pred             HHHHHHHH-HHHhcCCH-------HHHHHHHHHHhh
Q 036107          283 ITCTIVMH-ALEKAKQI-------YEALKVYEKMKS  310 (441)
Q Consensus       283 ~~~~~ll~-~~~~~~~~-------~~a~~~~~~m~~  310 (441)
                      .+|.-+.. ++...|+.       ++|.++|.+...
T Consensus       340 a~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~  375 (468)
T PF10300_consen  340 AFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPK  375 (468)
T ss_pred             HHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence            44444333 34556777       888888887654

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>KOG2796 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.13  E-value=1.9  Score=37.78  Aligned_cols=145  Identities=12%  Similarity=0.075  Sum_probs=102.7

Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhC-CCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHH
Q 036107          177 DTRAMSVLMDTLVKRNSVAHAYKVFLKFKDC-ISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIE  255 (441)
Q Consensus       177 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~  255 (441)
                      -..+.++++..+.-.|.+.-....++++.+. -+.+......|.+.-.+.|+.+.|...|++..+..-+.|..+.+.++.
T Consensus       176 l~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~  255 (366)
T KOG2796|consen  176 LGRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVL  255 (366)
T ss_pred             HHHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHH
Confidence            3456666777777778887888888887553 356777788899999999999999999998876555566666665543


Q ss_pred             -----HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHH
Q 036107          256 -----HYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLI  324 (441)
Q Consensus       256 -----~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li  324 (441)
                           .|.-.+++-.|...+.+.....-. |+..-|.-.-+..-.|+..+|.+..+.|++.  .|...+-++++
T Consensus       256 ~n~a~i~lg~nn~a~a~r~~~~i~~~D~~-~~~a~NnKALcllYlg~l~DAiK~~e~~~~~--~P~~~l~es~~  326 (366)
T KOG2796|consen  256 MNSAFLHLGQNNFAEAHRFFTEILRMDPR-NAVANNNKALCLLYLGKLKDALKQLEAMVQQ--DPRHYLHESVL  326 (366)
T ss_pred             hhhhhheecccchHHHHHHHhhccccCCC-chhhhchHHHHHHHHHHHHHHHHHHHHHhcc--CCccchhhhHH
Confidence                 344467788888888887765332 4555554444455578999999999999986  45444444443

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=95.04  E-value=0.086  Score=37.08  Aligned_cols=62  Identities=16%  Similarity=0.149  Sum_probs=33.8

Q ss_pred             hhHHHHHHHHHhcCCHHHHHHHHHHHHHc----CC-CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 036107          248 VSYTCFIEHYCREKDFRKVDYTLKEMQEK----GC-KPS-VITCTIVMHALEKAKQIYEALKVYEKMK  309 (441)
Q Consensus       248 ~~~~~li~~~~~~g~~~~a~~l~~~m~~~----g~-~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~m~  309 (441)
                      .+|+.+-..|...|++++|+..|++..+.    |- .|+ ..++..+-.+|...|++++|.+.+++..
T Consensus         6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al   73 (78)
T PF13424_consen    6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL   73 (78)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            34555556666666666666666655422    11 122 3455566666666666666666666543

...

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=95.03  E-value=0.89  Score=43.95  Aligned_cols=133  Identities=13%  Similarity=0.154  Sum_probs=88.9

Q ss_pred             HHHHHHHHHHHHcCCChhHHHHHHHHHHHhcCCCccHHHHHHHHhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCC
Q 036107          130 PETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCIS  209 (441)
Q Consensus       130 ~~~y~~li~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~  209 (441)
                      ..-.+.++.-+-+.|..+.|+++..+-..                         -.....+.|+++.|.++-+...    
T Consensus       295 ~~~~~~i~~fL~~~G~~e~AL~~~~D~~~-------------------------rFeLAl~lg~L~~A~~~a~~~~----  345 (443)
T PF04053_consen  295 KDQGQSIARFLEKKGYPELALQFVTDPDH-------------------------RFELALQLGNLDIALEIAKELD----  345 (443)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHSS-HHH-------------------------HHHHHHHCT-HHHHHHHCCCCS----
T ss_pred             hhHHHHHHHHHHHCCCHHHHHhhcCChHH-------------------------HhHHHHhcCCHHHHHHHHHhcC----
Confidence            44577788888888888888887665332                         1345567788888877665553    


Q ss_pred             CcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 036107          210 LSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVM  289 (441)
Q Consensus       210 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll  289 (441)
                       +...|..|-....+.|+++-|++.|.+...         |..|+--|.-.|+.+...++.+.....|.      ++...
T Consensus       346 -~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~~~------~n~af  409 (443)
T PF04053_consen  346 -DPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEERGD------INIAF  409 (443)
T ss_dssp             -THHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-------HHHHH
T ss_pred             -cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHccC------HHHHH
Confidence             455788888888888888888888877654         56666677778888777777777666653      45566


Q ss_pred             HHHHhcCCHHHHHHHHHH
Q 036107          290 HALEKAKQIYEALKVYEK  307 (441)
Q Consensus       290 ~~~~~~~~~~~a~~~~~~  307 (441)
                      .++.-.|+++++.+++.+
T Consensus       410 ~~~~~lgd~~~cv~lL~~  427 (443)
T PF04053_consen  410 QAALLLGDVEECVDLLIE  427 (443)
T ss_dssp             HHHHHHT-HHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHH
Confidence            666666777777766654

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=94.87  E-value=4  Score=39.44  Aligned_cols=341  Identities=9%  Similarity=-0.031  Sum_probs=193.8

Q ss_pred             hhcccchhcccccCccchhccCCCCCCCCcccccchhhHHHhhhhchhhHHHHHhhhcCchhhHHHHHHHHHhcCCChHH
Q 036107           28 LLCNRHCITNELTGLPSWLKFFDTQSPDEDFVIPSLASWVESLKLNEQSRISSHALSEDHETDVDKVSEILRKRYPSPDK  107 (441)
Q Consensus        28 ~l~~~~~~~~~a~~l~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~g~  107 (441)
                      ..+..|++. .|..+|.---..++  ++...|+.-..+.+..++++.+..--.  ....+.|++..-+.....+..-.|+
T Consensus        11 aa~s~~d~~-~ai~~~t~ai~l~p--~nhvlySnrsaa~a~~~~~~~al~da~--k~~~l~p~w~kgy~r~Gaa~~~lg~   85 (539)
T KOG0548|consen   11 AAFSSGDFE-TAIRLFTEAIMLSP--TNHVLYSNRSAAYASLGSYEKALKDAT--KTRRLNPDWAKGYSRKGAALFGLGD   85 (539)
T ss_pred             hhcccccHH-HHHHHHHHHHccCC--CccchhcchHHHHHHHhhHHHHHHHHH--HHHhcCCchhhHHHHhHHHHHhccc
Confidence            456778887 78777772222222  266677777777788888777655433  3345778888888888877778889


Q ss_pred             HHHHHhhhhhHhhhhcCCCCCC-HHHHHHHHHHHHcCCChhHHHHHHHHHHHhcCCCccHHHHHHHHhhcCHHHHHHHHH
Q 036107          108 VVEALKCFCFTWAKTQTGYMHT-PETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMD  186 (441)
Q Consensus       108 ~~~A~~~~~~~~~~~~~g~~p~-~~~y~~li~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~li~  186 (441)
                      +++|+..|.   .  .....|+ ...++-+..++....   .+.+.|..-.-.. ...+.......+   ....|..++.
T Consensus        86 ~~eA~~ay~---~--GL~~d~~n~~L~~gl~~a~~~~~---~~~~~~~~p~~~~-~l~~~p~t~~~~---~~~~~~~~l~  153 (539)
T KOG0548|consen   86 YEEAILAYS---E--GLEKDPSNKQLKTGLAQAYLEDY---AADQLFTKPYFHE-KLANLPLTNYSL---SDPAYVKILE  153 (539)
T ss_pred             HHHHHHHHH---H--HhhcCCchHHHHHhHHHhhhHHH---HhhhhccCcHHHH-HhhcChhhhhhh---ccHHHHHHHH
Confidence            999998883   1  1122333 456777777661111   1122221100000 000000000001   2233333333


Q ss_pred             HHHhc----------CCHHHHHHHHHHh------h-------hCCCC------------c----------HHHHHHHHHH
Q 036107          187 TLVKR----------NSVAHAYKVFLKF------K-------DCISL------------S----------SQIFDVLIHG  221 (441)
Q Consensus       187 ~~~~~----------g~~~~a~~~~~~~------~-------~~~~~------------~----------~~~~~~li~~  221 (441)
                      .+-+.          .++..+.......      .       ....|            +          ..-...+.++
T Consensus       154 ~~~~~p~~l~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgna  233 (539)
T KOG0548|consen  154 IIQKNPTSLKLYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNA  233 (539)
T ss_pred             HhhcCcHhhhcccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHH
Confidence            33221          1112222211110      0       01111            0          1124456777


Q ss_pred             HHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHH-------HHHHHHHh
Q 036107          222 WCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCT-------IVMHALEK  294 (441)
Q Consensus       222 ~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~-------~ll~~~~~  294 (441)
                      .-+..+++.|.+-+.......  -++.-++..-.+|...|.+.++...-..-.+.|-. ...-|+       .+-.+|.+
T Consensus       234 aykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~g~a~~k  310 (539)
T KOG0548|consen  234 AYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARLGNAYTK  310 (539)
T ss_pred             HHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHhhhhhhh
Confidence            777888999999888887753  34555666667888888888877777666555432 112222       23346777


Q ss_pred             cCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCcc---------chHHHHHHHHHhcCChhHHHHHHHHHHHcCCC
Q 036107          295 AKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRF---------LIYNTMISSACVRSEEGNALKLRQKIEEDSCK  365 (441)
Q Consensus       295 ~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~---------~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~  365 (441)
                      .++++.+...|.+....-..|+...-..-..--.+.+..         .-.-.=-..+.+.|++..|++.|.+++... .
T Consensus       311 ~~~~~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~-P  389 (539)
T KOG0548|consen  311 REDYEGAIKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRD-P  389 (539)
T ss_pred             HHhHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC-C
Confidence            888999999999887765566554333322222222111         001111456778999999999999998765 4


Q ss_pred             CCHHHHHHHHHHHHhcCChhhHHH
Q 036107          366 PDCETHARSLKMCCHKKRMKDGML  389 (441)
Q Consensus       366 p~~~t~~~li~~~~~~g~~~~a~~  389 (441)
                      -|...|..---+|.+.|.+..|..
T Consensus       390 ~Da~lYsNRAac~~kL~~~~~aL~  413 (539)
T KOG0548|consen  390 EDARLYSNRAACYLKLGEYPEALK  413 (539)
T ss_pred             chhHHHHHHHHHHHHHhhHHHHHH
Confidence            456688888889999999988855

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=94.56  E-value=0.59  Score=41.59  Aligned_cols=127  Identities=13%  Similarity=0.111  Sum_probs=86.2

Q ss_pred             HHHhcCCHHHHHHHHHHhhhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC-HhhHHHHHHHHHhcCCHHH
Q 036107          187 TLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPD-GVSYTCFIEHYCREKDFRK  265 (441)
Q Consensus       187 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~  265 (441)
                      -..+.+++++|+..|.+.-.-.+-|.+-|..--.+|++.|.++.|.+=.+.-..  +.|. ..+|..|-.+|...|++.+
T Consensus        90 ~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~--iDp~yskay~RLG~A~~~~gk~~~  167 (304)
T KOG0553|consen   90 KLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALS--IDPHYSKAYGRLGLAYLALGKYEE  167 (304)
T ss_pred             HHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHh--cChHHHHHHHHHHHHHHccCcHHH
Confidence            456778888888888887655566777788888888888888888887777665  3343 3678888888888888888


Q ss_pred             HHHHHHHHHHcCCCCCHHHHHHHHHHHH-hcCCHH---HHHHHHHHHhhCCCCCCH
Q 036107          266 VDYTLKEMQEKGCKPSVITCTIVMHALE-KAKQIY---EALKVYEKMKSDDCLTDT  317 (441)
Q Consensus       266 a~~l~~~m~~~g~~p~~~~~~~ll~~~~-~~~~~~---~a~~~~~~m~~~g~~~~~  317 (441)
                      |.+.|+...+  +.|+-.+|-.=+...- +.+...   .+..-++.....|..|+.
T Consensus       168 A~~aykKaLe--ldP~Ne~~K~nL~~Ae~~l~e~~~~~~~~~~~d~~~~ig~~Pd~  221 (304)
T KOG0553|consen  168 AIEAYKKALE--LDPDNESYKSNLKIAEQKLNEPKSSAQASGSFDMAGLIGAFPDS  221 (304)
T ss_pred             HHHHHHhhhc--cCCCcHHHHHHHHHHHHHhcCCCcccccccchhhhhhccCCccc
Confidence            8888887765  4566666665555433 333333   333444444444444544

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=94.48  E-value=0.18  Score=35.42  Aligned_cols=67  Identities=18%  Similarity=0.059  Sum_probs=49.6

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHhhC--CCCCCHHHHHHHHHHHHhcCccchHHHHHHHHHhcCChhHHHHHHHHH
Q 036107          282 VITCTIVMHALEKAKQIYEALKVYEKMKSD--DCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKI  359 (441)
Q Consensus       282 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~--g~~~~~~~~~~li~~~~~~g~~~~~~~li~~~~~~g~~~~a~~~~~~m  359 (441)
                      ..+|+.+-..|...|++++|...|++..+.  ...++ .  ..++         .+++.+-..|...|++++|++.+++-
T Consensus         5 a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~-~--~~~a---------~~~~~lg~~~~~~g~~~~A~~~~~~a   72 (78)
T PF13424_consen    5 ANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDD-H--PDTA---------NTLNNLGECYYRLGDYEEALEYYQKA   72 (78)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTH-H--HHHH---------HHHHHHHHHHHHTTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCC-C--HHHH---------HHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            457888999999999999999999988753  11111 1  0111         34888888999999999999999875


Q ss_pred             H
Q 036107          360 E  360 (441)
Q Consensus       360 ~  360 (441)
                      .
T Consensus        73 l   73 (78)
T PF13424_consen   73 L   73 (78)
T ss_dssp             H
T ss_pred             H
Confidence            4

...

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=94.41  E-value=4.4  Score=37.96  Aligned_cols=171  Identities=11%  Similarity=0.054  Sum_probs=106.2

Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhC----CCCcHHHHHHHHHHHHh---cCCHHHHHHHHHHHhhCCCCCCHhh
Q 036107          177 DTRAMSVLMDTLVKRNSVAHAYKVFLKFKDC----ISLSSQIFDVLIHGWCK---TRKSDYAQKAMKEMFQHGFSPDGVS  249 (441)
Q Consensus       177 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~~~~~~~~~li~~~~~---~~~~~~a~~~~~~m~~~g~~p~~~~  249 (441)
                      +..+...++-+|....+++...++++.++.-    +.-+..+--...-++-+   .|+.++|++++..+....-.++..|
T Consensus       140 s~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~  219 (374)
T PF13281_consen  140 SPDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDT  219 (374)
T ss_pred             ChhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHH
Confidence            4555567777899999999999999999652    22222222334445566   8999999999999666556678888


Q ss_pred             HHHHHHHHHh---------cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHH----HHHHHH---H-HHhhCC
Q 036107          250 YTCFIEHYCR---------EKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIY----EALKVY---E-KMKSDD  312 (441)
Q Consensus       250 ~~~li~~~~~---------~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~----~a~~~~---~-~m~~~g  312 (441)
                      |..+-..|-.         ....++|...|.+--+.  .||.++--.+...+.-.|...    +..++-   . ...++|
T Consensus       220 ~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~--~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg  297 (374)
T PF13281_consen  220 LGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEI--EPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKG  297 (374)
T ss_pred             HHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcC--CccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhc
Confidence            8877766542         12367777777765443  355544333333333334321    222222   1 112233


Q ss_pred             CCCCHHHHHHHHHHHHhcCccchHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 036107          313 CLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEED  362 (441)
Q Consensus       313 ~~~~~~~~~~li~~~~~~g~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~  362 (441)
                      .......|             .-+.+++.+..-.|+.++|.+..++|...
T Consensus       298 ~~~~~~dY-------------Wd~ATl~Ea~vL~~d~~ka~~a~e~~~~l  334 (374)
T PF13281_consen  298 SLEKMQDY-------------WDVATLLEASVLAGDYEKAIQAAEKAFKL  334 (374)
T ss_pred             cccccccH-------------HHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence            22222221             44677888888899999999999998865

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=94.39  E-value=2.9  Score=35.76  Aligned_cols=55  Identities=7%  Similarity=0.026  Sum_probs=28.1

Q ss_pred             HHhcCCHHHHHHHHHHHhhCCC--CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 036107          222 WCKTRKSDYAQKAMKEMFQHGF--SPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEK  276 (441)
Q Consensus       222 ~~~~~~~~~a~~~~~~m~~~g~--~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~  276 (441)
                      +...|++++|.+.|+++.....  +--....-.+..++.+.|++++|...+++..+.
T Consensus        15 ~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~   71 (203)
T PF13525_consen   15 ALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL   71 (203)
T ss_dssp             HHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             HHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            3455666666666666654311  001123344555666666666666666665543

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=94.34  E-value=0.29  Score=33.73  Aligned_cols=55  Identities=7%  Similarity=0.015  Sum_probs=30.2

Q ss_pred             HHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 036107          221 GWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEK  276 (441)
Q Consensus       221 ~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~  276 (441)
                      .|.+.+++++|.++++.+...+ +.+...|...-..+.+.|++++|.+.|+...+.
T Consensus         4 ~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~   58 (73)
T PF13371_consen    4 IYLQQEDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLERALEL   58 (73)
T ss_pred             HHHhCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence            4555566666666666665542 123444555555556666666666666665543

>smart00299 CLH Clathrin heavy chain repeat homology

Probab=94.33  E-value=2.1  Score=33.96  Aligned_cols=114  Identities=11%  Similarity=0.041  Sum_probs=81.6

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHH
Q 036107          178 TRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHY  257 (441)
Q Consensus       178 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~  257 (441)
                      ......++..+.+.+..+.+..+++.+-.....+...+|.+|..|++.+ ..+..+.+..      ..+......+++.|
T Consensus         7 ~~~~~~vv~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~li~ly~~~~-~~~ll~~l~~------~~~~yd~~~~~~~c   79 (140)
T smart00299        7 PIDVSEVVELFEKRNLLEELIPYLESALKLNSENPALQTKLIELYAKYD-PQKEIERLDN------KSNHYDIEKVGKLC   79 (140)
T ss_pred             cCCHHHHHHHHHhCCcHHHHHHHHHHHHccCccchhHHHHHHHHHHHHC-HHHHHHHHHh------ccccCCHHHHHHHH
Confidence            3445567888888899999999999874332477788999999999864 4444555542      13455666789999


Q ss_pred             HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHH
Q 036107          258 CREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKA-KQIYEALKVYEK  307 (441)
Q Consensus       258 ~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~-~~~~~a~~~~~~  307 (441)
                      .+.+-++++..++..+..         |...+..+... ++++.|.+++.+
T Consensus        80 ~~~~l~~~~~~l~~k~~~---------~~~Al~~~l~~~~d~~~a~~~~~~  121 (140)
T smart00299       80 EKAKLYEEAVELYKKDGN---------FKDAIVTLIEHLGNYEKAIEYFVK  121 (140)
T ss_pred             HHcCcHHHHHHHHHhhcC---------HHHHHHHHHHcccCHHHHHHHHHh
Confidence            999999999999988743         22233334444 788888888875

>PF13170 DUF4003: Protein of unknown function (DUF4003)

Probab=94.31  E-value=4.1  Score=37.14  Aligned_cols=167  Identities=11%  Similarity=0.102  Sum_probs=88.2

Q ss_pred             hchhhHHHHHhhhc-----CchhhHHHHHHHHHhcCCC-hH-HHHHHHhhhhhHhhhhcCCCCCCHHHHHHHHHHHHc--
Q 036107           72 LNEQSRISSHALSE-----DHETDVDKVSEILRKRYPS-PD-KVVEALKCFCFTWAKTQTGYMHTPETYNAMVEALGK--  142 (441)
Q Consensus        72 ~~~~~~i~~~~~~~-----~~~~~~~~~~~~l~~~~~~-~g-~~~~A~~~~~~~~~~~~~g~~p~~~~y~~li~~~~~--  142 (441)
                      .+.-+.+-.++.+.     ++.++...+...++..... +. .+.+.+.++   ....+.|++.+..+|-+.......  
T Consensus        35 ~~~~~~~~~~IK~~t~~fS~lr~~~~~~la~~l~~~~~~p~~~~~~~~~~y---~~L~~~gFk~~~y~~laA~~i~~~~~  111 (297)
T PF13170_consen   35 AERFKEISKYIKKNTGWFSPLRGNHRFILAALLDISFEDPEEAFKEVLDIY---EKLKEAGFKRSEYLYLAALIILEEEE  111 (297)
T ss_pred             HHHHHHHHHHHHHcccccccccccHHHHHHHHHHHcCCCHHHHHHHHHHHH---HHHHHhccCccChHHHHHHHHHHhcc
Confidence            33444454555542     3444444444455444444 22 344445555   555667888888777664444433  


Q ss_pred             CC----ChhHHHHHHHHHHHhcCCCccHHHHHHHHhhcCHHHHHHHHHHHHhcCCH----HHHHHHHHHhhh-CCCCcHH
Q 036107          143 SK----KFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSV----AHAYKVFLKFKD-CISLSSQ  213 (441)
Q Consensus       143 ~~----~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~----~~a~~~~~~~~~-~~~~~~~  213 (441)
                      ..    ....|.++++.|++..+...          ..+..++..++..  ...++    +.++.+|+.+.+ ++..+-.
T Consensus       112 ~~~~~~~~~ra~~iy~~mKk~H~fLT----------s~~D~~~a~lLA~--~~~~~e~l~~~~E~~Y~~L~~~~f~kgn~  179 (297)
T PF13170_consen  112 KEDYDEIIQRAKEIYKEMKKKHPFLT----------SPEDYPFAALLAM--TSEDVEELAERMEQCYQKLADAGFKKGND  179 (297)
T ss_pred             cccHHHHHHHHHHHHHHHHHhCcccc----------CccchhHHHHHhc--ccccHHHHHHHHHHHHHHHHHhCCCCCcH
Confidence            22    35678899999998764432          3355666666554  34443    344555565544 5444222


Q ss_pred             --HHHHHHHHHHhcCC--HHHHHHHHHHHhhCCCCCCHhhHHHH
Q 036107          214 --IFDVLIHGWCKTRK--SDYAQKAMKEMFQHGFSPDGVSYTCF  253 (441)
Q Consensus       214 --~~~~li~~~~~~~~--~~~a~~~~~~m~~~g~~p~~~~~~~l  253 (441)
                        ..+.++........  ...+.++++.+.+.|+++....|..+
T Consensus       180 LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~l  223 (297)
T PF13170_consen  180 LQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTL  223 (297)
T ss_pred             HHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHH
Confidence              22222222221111  34666777777777777666665543

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=94.19  E-value=6.5  Score=39.04  Aligned_cols=82  Identities=17%  Similarity=0.145  Sum_probs=50.4

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCccchHHHHHHHHHhcCChhHHHHHHHHHHH
Q 036107          282 VITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEE  361 (441)
Q Consensus       282 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  361 (441)
                      ..+...+-.-+.+...+.-|.++|..|-+                         -..++......+++.+|..+-++.-+
T Consensus       747 re~l~~~a~ylk~l~~~gLAaeIF~k~gD-------------------------~ksiVqlHve~~~W~eAFalAe~hPe  801 (1081)
T KOG1538|consen  747 REPLLLCATYLKKLDSPGLAAEIFLKMGD-------------------------LKSLVQLHVETQRWDEAFALAEKHPE  801 (1081)
T ss_pred             hhHHHHHHHHHhhccccchHHHHHHHhcc-------------------------HHHHhhheeecccchHhHhhhhhCcc
Confidence            34445555555666677777777777654                         34556667778888888887766432


Q ss_pred             cCCCCCHH-----------HHHHHHHHHHhcCChhhHHHH
Q 036107          362 DSCKPDCE-----------THARSLKMCCHKKRMKDGMLV  390 (441)
Q Consensus       362 ~g~~p~~~-----------t~~~li~~~~~~g~~~~a~~~  390 (441)
                        ..||.+           -|...-.+|.++|+-.+|.++
T Consensus       802 --~~~dVy~pyaqwLAE~DrFeEAqkAfhkAGr~~EA~~v  839 (1081)
T KOG1538|consen  802 --FKDDVYMPYAQWLAENDRFEEAQKAFHKAGRQREAVQV  839 (1081)
T ss_pred             --ccccccchHHHHhhhhhhHHHHHHHHHHhcchHHHHHH
Confidence              234432           244445666677776666553

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=94.13  E-value=0.68  Score=45.50  Aligned_cols=89  Identities=18%  Similarity=0.203  Sum_probs=54.7

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhh--------
Q 036107          178 TRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVS--------  249 (441)
Q Consensus       178 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~--------  249 (441)
                      .++...+-..+.+...+-.|-++|..|.+        ...++..+...++|.+|..+-+...+  +.||+..        
T Consensus       747 re~l~~~a~ylk~l~~~gLAaeIF~k~gD--------~ksiVqlHve~~~W~eAFalAe~hPe--~~~dVy~pyaqwLAE  816 (1081)
T KOG1538|consen  747 REPLLLCATYLKKLDSPGLAAEIFLKMGD--------LKSLVQLHVETQRWDEAFALAEKHPE--FKDDVYMPYAQWLAE  816 (1081)
T ss_pred             hhHHHHHHHHHhhccccchHHHHHHHhcc--------HHHHhhheeecccchHhHhhhhhCcc--ccccccchHHHHhhh
Confidence            34444444444555666666777766643        34566777777888888877777665  3444432        


Q ss_pred             ---HHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 036107          250 ---YTCFIEHYCREKDFRKVDYTLKEMQEK  276 (441)
Q Consensus       250 ---~~~li~~~~~~g~~~~a~~l~~~m~~~  276 (441)
                         |.-.=.+|.+.|+-.+|..+++++...
T Consensus       817 ~DrFeEAqkAfhkAGr~~EA~~vLeQLtnn  846 (1081)
T KOG1538|consen  817 NDRFEEAQKAFHKAGRQREAVQVLEQLTNN  846 (1081)
T ss_pred             hhhHHHHHHHHHHhcchHHHHHHHHHhhhh
Confidence               333445677777777777777777543

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=94.02  E-value=7.7  Score=39.23  Aligned_cols=251  Identities=9%  Similarity=0.082  Sum_probs=134.9

Q ss_pred             CHHHHHHHHHHHHcCCChhHHHHHHHHHHHhcCCCccHHHHHHHHhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhC-
Q 036107          129 TPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDC-  207 (441)
Q Consensus       129 ~~~~y~~li~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-  207 (441)
                      ...+|..+-+---..|+++.|..+++.=...+..+|         .-++..-+..-+.-+.+.|+.+....+.-.+++. 
T Consensus       506 ~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~---------lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~  576 (829)
T KOG2280|consen  506 PGISYAAIARRAYQEGRFELARKLLELEPRSGEQVP---------LLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKL  576 (829)
T ss_pred             CceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhH---------HHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHH
Confidence            345676666666677888888888775443332222         1124556666777777788888777776655331 


Q ss_pred             -----------CCCcHHHHHHHHHH--------HHhcCCHHHHHHHH--HHHh----hCCCCCCHhhHHHHHHHHHhcCC
Q 036107          208 -----------ISLSSQIFDVLIHG--------WCKTRKSDYAQKAM--KEMF----QHGFSPDGVSYTCFIEHYCREKD  262 (441)
Q Consensus       208 -----------~~~~~~~~~~li~~--------~~~~~~~~~a~~~~--~~m~----~~g~~p~~~~~~~li~~~~~~g~  262 (441)
                                 .+.....|--+++-        +-..++-..+..-|  +...    ..|..|+.   ...-+++++...
T Consensus       577 ~~s~l~~~l~~~p~a~~lY~~~~r~~~~~~l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~l---k~~a~~~a~sk~  653 (829)
T KOG2280|consen  577 NRSSLFMTLRNQPLALSLYRQFMRHQDRATLYDFYNQDDNHQALASFHLQASYAAETIEGRIPAL---KTAANAFAKSKE  653 (829)
T ss_pred             HHHHHHHHHHhchhhhHHHHHHHHhhchhhhhhhhhcccchhhhhhhhhhhhhhhhhhcccchhH---HHHHHHHhhhhh
Confidence                       11111122222210        00111111111111  1100    01222222   233334444433


Q ss_pred             HHH----------HHHHHHHHHH-cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcC
Q 036107          263 FRK----------VDYTLKEMQE-KGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAV  331 (441)
Q Consensus       263 ~~~----------a~~l~~~m~~-~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g  331 (441)
                      ..-          -+++.+.+.. .|.....-+.+--+.-+...|+..+|.++-.+.+    .||-..            
T Consensus       654 ~s~e~ka~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~------------  717 (829)
T KOG2280|consen  654 KSFEAKALEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRL------------  717 (829)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC----Ccchhh------------
Confidence            111          1122222221 2333444455666666777788888887776665    334433            


Q ss_pred             ccchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCCCCHHHHHH
Q 036107          332 RFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKM  411 (441)
Q Consensus       332 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~~~~m~~~~~~p~~~~~~~  411 (441)
                          |..=+.+++..+++++-+++-+.++.      +.-|.-++.+|.+.|+.++|.+++.   +     +.+..    -
T Consensus       718 ----~wLk~~aLa~~~kweeLekfAkskks------PIGy~PFVe~c~~~~n~~EA~KYip---r-----v~~l~----e  775 (829)
T KOG2280|consen  718 ----WWLKLTALADIKKWEELEKFAKSKKS------PIGYLPFVEACLKQGNKDEAKKYIP---R-----VGGLQ----E  775 (829)
T ss_pred             ----HHHHHHHHHhhhhHHHHHHHHhccCC------CCCchhHHHHHHhcccHHHHhhhhh---c-----cCChH----H
Confidence                77778888888888887776666541      3447778999999999999987433   3     11111    4


Q ss_pred             HHHHHHhcCCccHHHHHH
Q 036107          412 LAEELEKKSLGNAKERID  429 (441)
Q Consensus       412 ll~~~~~~g~~~~a~~~~  429 (441)
                      ...+|.+.|++.+|.++-
T Consensus       776 kv~ay~~~~~~~eAad~A  793 (829)
T KOG2280|consen  776 KVKAYLRVGDVKEAADLA  793 (829)
T ss_pred             HHHHHHHhccHHHHHHHH
Confidence            557788888888776653

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=93.75  E-value=0.34  Score=33.39  Aligned_cols=57  Identities=16%  Similarity=0.073  Sum_probs=49.8

Q ss_pred             HHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCC
Q 036107          255 EHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDD  312 (441)
Q Consensus       255 ~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g  312 (441)
                      ..|.+.+++++|.++++.+.+.+.. +...+...-.++.+.|++++|.+.|+...+.+
T Consensus         3 ~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~   59 (73)
T PF13371_consen    3 QIYLQQEDYEEALEVLERALELDPD-DPELWLQRARCLFQLGRYEEALEDLERALELS   59 (73)
T ss_pred             HHHHhCCCHHHHHHHHHHHHHhCcc-cchhhHHHHHHHHHhccHHHHHHHHHHHHHHC
Confidence            5688999999999999999987433 67778888899999999999999999999764

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=93.74  E-value=6.1  Score=37.08  Aligned_cols=170  Identities=13%  Similarity=0.101  Sum_probs=108.3

Q ss_pred             HHHHHHHHHHHHcCCChhHHHHHHHHHHHhcCC-CccHHHHHHHHhhcCHHHHHHHHHHHHh---cCCHHHHHHHHHH-h
Q 036107          130 PETYNAMVEALGKSKKFGLMWELVKEIDELSNG-YVSLAAMSTVMRRLDTRAMSVLMDTLVK---RNSVAHAYKVFLK-F  204 (441)
Q Consensus       130 ~~~y~~li~~~~~~~~~~~a~~l~~~m~~~~~~-~~~~~~~~~~~~~~~~~~~~~li~~~~~---~g~~~~a~~~~~~-~  204 (441)
                      ..+...++-.|....+++..+++++.+...... .+.           ...+--...-++-+   .|+.++|++++.. +
T Consensus       141 ~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~-----------~~~i~~~yafALnRrn~~gdre~Al~il~~~l  209 (374)
T PF13281_consen  141 PDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVAN-----------QHNIKFQYAFALNRRNKPGDREKALQILLPVL  209 (374)
T ss_pred             hhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhc-----------chHHHHHHHHHHhhcccCCCHHHHHHHHHHHH
Confidence            334446666799999999999999999885311 111           22222233345556   8999999999988 5


Q ss_pred             hhCCCCcHHHHHHHHHHHHh---------cCCHHHHHHHHHHHhhCCCCCCHhh---HHHHHHHHHhcCC-HHHHHHHH-
Q 036107          205 KDCISLSSQIFDVLIHGWCK---------TRKSDYAQKAMKEMFQHGFSPDGVS---YTCFIEHYCREKD-FRKVDYTL-  270 (441)
Q Consensus       205 ~~~~~~~~~~~~~li~~~~~---------~~~~~~a~~~~~~m~~~g~~p~~~~---~~~li~~~~~~g~-~~~a~~l~-  270 (441)
                      .....++..+|..+-+.|-.         ....++|...|.+--+.  .||..+   +.+|+........ -.+..++- 
T Consensus       210 ~~~~~~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~--~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~  287 (374)
T PF13281_consen  210 ESDENPDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEI--EPDYYSGINAATLLMLAGHDFETSEELRKIGV  287 (374)
T ss_pred             hccCCCChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcC--CccccchHHHHHHHHHcCCcccchHHHHHHHH
Confidence            66667788888887766632         22477888888766553  355433   2233332222111 12333333 


Q ss_pred             --H-HHHHcC---CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCC
Q 036107          271 --K-EMQEKG---CKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDD  312 (441)
Q Consensus       271 --~-~m~~~g---~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g  312 (441)
                        . ...+.|   -..|---+.+++.++.-.|+.++|.+..+.|....
T Consensus       288 ~l~~llg~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~  335 (374)
T PF13281_consen  288 KLSSLLGRKGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLK  335 (374)
T ss_pred             HHHHHHHhhccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcC
Confidence              2 222333   33456677899999999999999999999999764

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=93.60  E-value=4.2  Score=34.78  Aligned_cols=154  Identities=9%  Similarity=0.043  Sum_probs=82.6

Q ss_pred             HHHHcCCChhHHHHHHHHHHHhcCCCccHHHHHHHHhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcH-HHHH
Q 036107          138 EALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSS-QIFD  216 (441)
Q Consensus       138 ~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~  216 (441)
                      ..+.+.|++.+|.+.|+.+...-+..+.           -....-.+..++-+.|+++.|...++.+....+-+. ..+.
T Consensus        13 ~~~~~~g~y~~Ai~~f~~l~~~~P~s~~-----------a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A   81 (203)
T PF13525_consen   13 LEALQQGDYEEAIKLFEKLIDRYPNSPY-----------APQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYA   81 (203)
T ss_dssp             HHHHHCT-HHHHHHHHHHHHHH-TTSTT-----------HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHHHCCCChH-----------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhH
Confidence            3456788999999999999886544332           345566778888999999999999988743222111 1233


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHhhCCCC---CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 036107          217 VLIHGWCKTRKSDYAQKAMKEMFQHGFS---PDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALE  293 (441)
Q Consensus       217 ~li~~~~~~~~~~~a~~~~~~m~~~g~~---p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~  293 (441)
                      ..+.+.+.........     .......   --...+..+|.-|=.+.-..+|...+..+.+.    =...--.+..-|.
T Consensus        82 ~Y~~g~~~~~~~~~~~-----~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~----la~~e~~ia~~Y~  152 (203)
T PF13525_consen   82 LYMLGLSYYKQIPGIL-----RSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNR----LAEHELYIARFYY  152 (203)
T ss_dssp             HHHHHHHHHHHHHHHH------TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHH----HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCccch-----hcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHH----HHHHHHHHHHHHH
Confidence            3333332211111110     0000000   00224555555566666666666666665442    1111123455677


Q ss_pred             hcCCHHHHHHHHHHHhhC
Q 036107          294 KAKQIYEALKVYEKMKSD  311 (441)
Q Consensus       294 ~~~~~~~a~~~~~~m~~~  311 (441)
                      +.|.+..|..-++.+.+.
T Consensus       153 ~~~~y~aA~~r~~~v~~~  170 (203)
T PF13525_consen  153 KRGKYKAAIIRFQYVIEN  170 (203)
T ss_dssp             CTT-HHHHHHHHHHHHHH
T ss_pred             HcccHHHHHHHHHHHHHH
Confidence            888888888888877764

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=93.59  E-value=0.8  Score=38.19  Aligned_cols=97  Identities=9%  Similarity=0.020  Sum_probs=74.1

Q ss_pred             hHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHH--HHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 036107          335 IYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCE--THARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKML  412 (441)
Q Consensus       335 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~--t~~~li~~~~~~g~~~~a~~~~~~~~~m~~~~~~p~~~~~~~l  412 (441)
                      .+..+...|++.|+.+.|++.|.++.+....|...  .+-.+|..+...+++..+.....-.+.+.+.|-.++...--..
T Consensus        38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk~  117 (177)
T PF10602_consen   38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLKV  117 (177)
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence            48888899999999999999999999876666554  5778889999999999998877777777777655555554445


Q ss_pred             HHHH--HhcCCccHHHHHHHH
Q 036107          413 AEEL--EKKSLGNAKERIDEL  431 (441)
Q Consensus       413 l~~~--~~~g~~~~a~~~~~~  431 (441)
                      ..++  ...+++.+|-+.|-.
T Consensus       118 ~~gL~~l~~r~f~~AA~~fl~  138 (177)
T PF10602_consen  118 YEGLANLAQRDFKEAAELFLD  138 (177)
T ss_pred             HHHHHHHHhchHHHHHHHHHc
Confidence            5554  356788887776643

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=93.56  E-value=1.3  Score=42.13  Aligned_cols=64  Identities=9%  Similarity=0.010  Sum_probs=35.3

Q ss_pred             cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCH----hhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 036107          211 SSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDG----VSYTCFIEHYCREKDFRKVDYTLKEMQEK  276 (441)
Q Consensus       211 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~----~~~~~li~~~~~~g~~~~a~~l~~~m~~~  276 (441)
                      +...++.+-.+|.+.|++++|...|++-.+.  .|+.    .+|..+-.+|...|+.++|++.+++..+.
T Consensus        74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL--~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel  141 (453)
T PLN03098         74 TAEDAVNLGLSLFSKGRVKDALAQFETALEL--NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD  141 (453)
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            4445555555566666666666666555442  3442    23555555666666666666666655543

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=93.49  E-value=4  Score=43.33  Aligned_cols=93  Identities=18%  Similarity=0.142  Sum_probs=58.6

Q ss_pred             CCCcHHHHHHHHHHH----HhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH
Q 036107          208 ISLSSQIFDVLIHGW----CKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVI  283 (441)
Q Consensus       208 ~~~~~~~~~~li~~~----~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~  283 (441)
                      .+|+...+..+..+|    .....+++|--+|+..-+         ..--+.+|...|+|++|+.+..+|....-. -..
T Consensus       931 y~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gk---------lekAl~a~~~~~dWr~~l~~a~ql~~~~de-~~~ 1000 (1265)
T KOG1920|consen  931 YKPDSEKQKVIYEAYADHLREELMSDEAALMYERCGK---------LEKALKAYKECGDWREALSLAAQLSEGKDE-LVI 1000 (1265)
T ss_pred             eccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhcc---------HHHHHHHHHHhccHHHHHHHHHhhcCCHHH-HHH
Confidence            356666665555444    456777777777765432         235577788888888888888877542110 112


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 036107          284 TCTIVMHALEKAKQIYEALKVYEKMKS  310 (441)
Q Consensus       284 ~~~~ll~~~~~~~~~~~a~~~~~~m~~  310 (441)
                      +-..|..-+...+++-+|-++..+-..
T Consensus      1001 ~a~~L~s~L~e~~kh~eAa~il~e~~s 1027 (1265)
T KOG1920|consen 1001 LAEELVSRLVEQRKHYEAAKILLEYLS 1027 (1265)
T ss_pred             HHHHHHHHHHHcccchhHHHHHHHHhc
Confidence            235566777777777777777666544

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=93.29  E-value=2  Score=43.71  Aligned_cols=151  Identities=14%  Similarity=0.206  Sum_probs=97.3

Q ss_pred             HHHHHHHHHHHcCCChhHHHHHHHHHHHhcCCCccHHHHHHHHhhcCHHHHHHHHHHH----HhcCCHHHHHHHHHHhhh
Q 036107          131 ETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTL----VKRNSVAHAYKVFLKFKD  206 (441)
Q Consensus       131 ~~y~~li~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~----~~~g~~~~a~~~~~~~~~  206 (441)
                      ....+-|..+.+-.-++.|+.+-+.-..                  |..+...++..|    -+.|++++|...|-+--.
T Consensus       335 k~le~kL~iL~kK~ly~~Ai~LAk~~~~------------------d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~  396 (933)
T KOG2114|consen  335 KDLETKLDILFKKNLYKVAINLAKSQHL------------------DEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIG  396 (933)
T ss_pred             ccHHHHHHHHHHhhhHHHHHHHHHhcCC------------------CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcc
Confidence            3455667777777777777777554221                  444444444444    457999999887755433


Q ss_pred             CCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 036107          207 CISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCT  286 (441)
Q Consensus       207 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~  286 (441)
                      -+.|+.     +|.-|.....+.+--.+++.+.+.|+. +...-+.||.+|.+.++.++..++.+.-. .|...  .-.-
T Consensus       397 ~le~s~-----Vi~kfLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~~--fd~e  467 (933)
T KOG2114|consen  397 FLEPSE-----VIKKFLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEWF--FDVE  467 (933)
T ss_pred             cCChHH-----HHHHhcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCC-Cccee--eeHH
Confidence            334443     667777777788888888898888875 55666888999999999888777766654 33221  1134


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHH
Q 036107          287 IVMHALEKAKQIYEALKVYEKM  308 (441)
Q Consensus       287 ~ll~~~~~~~~~~~a~~~~~~m  308 (441)
                      ..+..|.+.+-.++|..+-...
T Consensus       468 ~al~Ilr~snyl~~a~~LA~k~  489 (933)
T KOG2114|consen  468 TALEILRKSNYLDEAELLATKF  489 (933)
T ss_pred             HHHHHHHHhChHHHHHHHHHHh
Confidence            4555556666666665544433

>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1

Probab=93.26  E-value=4  Score=33.49  Aligned_cols=135  Identities=15%  Similarity=0.178  Sum_probs=85.4

Q ss_pred             HHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 036107          232 QKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSD  311 (441)
Q Consensus       232 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~  311 (441)
                      .+.+..+.+.|+.|+...|..+|+.+.+.|.+..    +.++.+.++-+|.......+-.+..  ....+.++=-+|   
T Consensus        14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~----L~qllq~~Vi~DSk~lA~~LLs~~~--~~~~~~Ql~lDM---   84 (167)
T PF07035_consen   14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQ----LHQLLQYHVIPDSKPLACQLLSLGN--QYPPAYQLGLDM---   84 (167)
T ss_pred             HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHH----HHHHHhhcccCCcHHHHHHHHHhHc--cChHHHHHHHHH---
Confidence            4556666778888888899999999999887654    4555566777777666655533332  222333333333   


Q ss_pred             CCCCCHHHHHHHHHHHHhcCccchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHH
Q 036107          312 DCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVL  391 (441)
Q Consensus       312 g~~~~~~~~~~li~~~~~~g~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~  391 (441)
                                     +.+.+.  .+..++..+...|++-+|+++.+...... .++   -..++.+-.+.++...-..++
T Consensus        85 ---------------LkRL~~--~~~~iievLL~~g~vl~ALr~ar~~~~~~-~~~---~~~fLeAA~~~~D~~lf~~V~  143 (167)
T PF07035_consen   85 ---------------LKRLGT--AYEEIIEVLLSKGQVLEALRYARQYHKVD-SVP---ARKFLEAAANSNDDQLFYAVF  143 (167)
T ss_pred             ---------------HHHhhh--hHHHHHHHHHhCCCHHHHHHHHHHcCCcc-cCC---HHHHHHHHHHcCCHHHHHHHH
Confidence                           333221  17788888999999999999887753211 222   245677777777766655555


Q ss_pred             HHHHH
Q 036107          392 NLMRE  396 (441)
Q Consensus       392 ~~~~~  396 (441)
                      +.|.+
T Consensus       144 ~ff~~  148 (167)
T PF07035_consen  144 RFFEE  148 (167)
T ss_pred             HHHHH
Confidence            55544

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=93.00  E-value=9.2  Score=37.55  Aligned_cols=167  Identities=8%  Similarity=-0.019  Sum_probs=92.8

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCCC-----HHHHHHHHHHHHh----cCCHHHHHHHHHHHhhCCCCCCHHH
Q 036107          250 YTCFIEHYCREKDFRKVDYTLKEMQEK-GCKPS-----VITCTIVMHALEK----AKQIYEALKVYEKMKSDDCLTDTSF  319 (441)
Q Consensus       250 ~~~li~~~~~~g~~~~a~~l~~~m~~~-g~~p~-----~~~~~~ll~~~~~----~~~~~~a~~~~~~m~~~g~~~~~~~  319 (441)
                      +..+++...-.||-+.+++++.+-.+. |+.-.     ..+|+.++..++.    ....+.|.++++.+.+.  -|+...
T Consensus       191 ~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--yP~s~l  268 (468)
T PF10300_consen  191 VLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--YPNSAL  268 (468)
T ss_pred             HHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--CCCcHH
Confidence            456666666777777777777775443 23211     1234444444433    34566777777777764  344433


Q ss_pred             HHHHHHHHHhcCccchHHHH-HHHHHhcCChhHHHHHHHHHHHcC---CCCCHHHHHHHHHHHHhcCChhhHHHHHHHHH
Q 036107          320 YSSLIFILSKAVRFLIYNTM-ISSACVRSEEGNALKLRQKIEEDS---CKPDCETHARSLKMCCHKKRMKDGMLVLNLMR  395 (441)
Q Consensus       320 ~~~li~~~~~~g~~~~~~~l-i~~~~~~g~~~~a~~~~~~m~~~g---~~p~~~t~~~li~~~~~~g~~~~a~~~~~~~~  395 (441)
                                      |... -+.+...|++++|++.|++.....   -+.....+--+...+.-..++++|.+.+..+.
T Consensus       269 ----------------fl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~  332 (468)
T PF10300_consen  269 ----------------FLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLL  332 (468)
T ss_pred             ----------------HHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHH
Confidence                            2221 234556777888888887654211   12333445556666777788888866444333


Q ss_pred             HHHHCCCCCCHHHHHHHHHHH-HhcCCc-------cHHHHHHHHHHHHhhh
Q 036107          396 EMLSKGIVPQESTHKMLAEEL-EKKSLG-------NAKERIDELLTHATEQ  438 (441)
Q Consensus       396 ~m~~~~~~p~~~~~~~ll~~~-~~~g~~-------~~a~~~~~~m~~~~~~  438 (441)
                      +  ...+  +..+|.-+.-+| ...|+.       ++|.+++........+
T Consensus       333 ~--~s~W--Ska~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l~~k  379 (468)
T PF10300_consen  333 K--ESKW--SKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKLKQK  379 (468)
T ss_pred             h--cccc--HHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHHHhh
Confidence            3  1222  334444444443 456666       7777777776655543

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1

Probab=92.96  E-value=4.4  Score=33.22  Aligned_cols=130  Identities=12%  Similarity=0.172  Sum_probs=79.5

Q ss_pred             hhhhcCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHhcCCCccHHHHHHHHhhcCHHHHHHHHHHHHhc--CCHHH
Q 036107          119 WAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKR--NSVAH  196 (441)
Q Consensus       119 ~~~~~~g~~p~~~~y~~li~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~--g~~~~  196 (441)
                      ..-...++.|+...|..+|..+.+.|++....+++..    + ..+            |.......+-.+...  .-...
T Consensus        18 rSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~qllq~----~-Vi~------------DSk~lA~~LLs~~~~~~~~~Ql   80 (167)
T PF07035_consen   18 RSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQLLQY----H-VIP------------DSKPLACQLLSLGNQYPPAYQL   80 (167)
T ss_pred             HHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHhh----c-ccC------------CcHHHHHHHHHhHccChHHHHH
Confidence            4445678888888999999999999987776666554    2 222            333333333233221  12334


Q ss_pred             HHHHHHHhhhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 036107          197 AYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEK  276 (441)
Q Consensus       197 a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~  276 (441)
                      |.+++.+++.       .+..++..+...|++-+|+++......    .+......++.+..+.+|...-..+|+-..+.
T Consensus        81 ~lDMLkRL~~-------~~~~iievLL~~g~vl~ALr~ar~~~~----~~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~~  149 (167)
T PF07035_consen   81 GLDMLKRLGT-------AYEEIIEVLLSKGQVLEALRYARQYHK----VDSVPARKFLEAAANSNDDQLFYAVFRFFEER  149 (167)
T ss_pred             HHHHHHHhhh-------hHHHHHHHHHhCCCHHHHHHHHHHcCC----cccCCHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            4555555431       266677788888888888888877533    23334456777777777766666666655543

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=92.83  E-value=6.9  Score=35.09  Aligned_cols=101  Identities=10%  Similarity=0.048  Sum_probs=48.1

Q ss_pred             CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhc---CCHHHHHHHHHHHHHcCCCCCHHHH
Q 036107          209 SLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCRE---KDFRKVDYTLKEMQEKGCKPSVITC  285 (441)
Q Consensus       209 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~---g~~~~a~~l~~~m~~~g~~p~~~~~  285 (441)
                      +-|...|-.|-..|...|+++.|..-|..-.+.- .++...+..+-.++...   .+..++..+|+++..... -|...-
T Consensus       153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~-~~iral  230 (287)
T COG4235         153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDP-ANIRAL  230 (287)
T ss_pred             CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCC-ccHHHH
Confidence            3455555555555555555555555555554420 12233333333322221   224455555555554321 133444


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHhhC
Q 036107          286 TIVMHALEKAKQIYEALKVYEKMKSD  311 (441)
Q Consensus       286 ~~ll~~~~~~~~~~~a~~~~~~m~~~  311 (441)
                      .-|-..+...|++.+|...|+.|.+.
T Consensus       231 ~lLA~~afe~g~~~~A~~~Wq~lL~~  256 (287)
T COG4235         231 SLLAFAAFEQGDYAEAAAAWQMLLDL  256 (287)
T ss_pred             HHHHHHHHHcccHHHHHHHHHHHHhc
Confidence            44445555556666666666655554

>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]

Probab=92.71  E-value=1.3  Score=39.57  Aligned_cols=78  Identities=12%  Similarity=0.189  Sum_probs=42.9

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhh-----CCCCCCHhhHHHH
Q 036107          179 RAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQ-----HGFSPDGVSYTCF  253 (441)
Q Consensus       179 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~-----~g~~p~~~~~~~l  253 (441)
                      .++..++..+...|+.+.+.+.++++-..-+-+...|..+|.+|.+.|+...|.+.|+++.+     .|+.|...+....
T Consensus       154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y  233 (280)
T COG3629         154 KALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALY  233 (280)
T ss_pred             HHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHH
Confidence            44455555555566666666666555444445555566666666666666666666555543     3555555544444


Q ss_pred             HHH
Q 036107          254 IEH  256 (441)
Q Consensus       254 i~~  256 (441)
                      ...
T Consensus       234 ~~~  236 (280)
T COG3629         234 EEI  236 (280)
T ss_pred             HHH
Confidence            333

>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=92.37  E-value=6.9  Score=34.03  Aligned_cols=213  Identities=10%  Similarity=0.035  Sum_probs=121.9

Q ss_pred             HHHHHHHHHHHHcCCChhHHHHHHHHHHHhcCCCccHHHHHHHHhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCC
Q 036107          130 PETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCIS  209 (441)
Q Consensus       130 ~~~y~~li~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~  209 (441)
                      ...|...-.+|....++++|...+.+..+--..              +..-|+       -....|.|.-+..++.. ++
T Consensus        31 as~yekAAvafRnAk~feKakdcLlkA~~~yEn--------------nrslfh-------AAKayEqaamLake~~k-ls   88 (308)
T KOG1585|consen   31 ASLYEKAAVAFRNAKKFEKAKDCLLKASKGYEN--------------NRSLFH-------AAKAYEQAAMLAKELSK-LS   88 (308)
T ss_pred             HHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHh--------------cccHHH-------HHHHHHHHHHHHHHHHH-hH
Confidence            346777778888889999998887776541100              111111       12233444444444422 11


Q ss_pred             CcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHH---cC--CCCCHHH
Q 036107          210 LSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQE---KG--CKPSVIT  284 (441)
Q Consensus       210 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~---~g--~~p~~~~  284 (441)
                      --+..|+--+..|..+|.++.|-..+++.-+                ..++.++++|++++++-..   .+  .+.-...
T Consensus        89 Evvdl~eKAs~lY~E~GspdtAAmaleKAak----------------~lenv~Pd~AlqlYqralavve~~dr~~ma~el  152 (308)
T KOG1585|consen   89 EVVDLYEKASELYVECGSPDTAAMALEKAAK----------------ALENVKPDDALQLYQRALAVVEEDDRDQMAFEL  152 (308)
T ss_pred             HHHHHHHHHHHHHHHhCCcchHHHHHHHHHH----------------HhhcCCHHHHHHHHHHHHHHHhccchHHHHHHH
Confidence            2233466777888888888888777776543                1234455555555555321   11  1112233


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCccchHHHHHHHHHhcCChhHHHHHHHHHHHcC-
Q 036107          285 CTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDS-  363 (441)
Q Consensus       285 ~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g-  363 (441)
                      |..+-..+.+...+++|-..|..-..         ++.-++.|...++.  |-+.|-.|....++..|.+.++.--+.+ 
T Consensus       153 ~gk~sr~lVrl~kf~Eaa~a~lKe~~---------~~~~~~~y~~~~k~--~va~ilv~L~~~Dyv~aekc~r~~~qip~  221 (308)
T KOG1585|consen  153 YGKCSRVLVRLEKFTEAATAFLKEGV---------AADKCDAYNSQCKA--YVAAILVYLYAHDYVQAEKCYRDCSQIPA  221 (308)
T ss_pred             HHHhhhHhhhhHHhhHHHHHHHHhhh---------HHHHHhhcccHHHH--HHHHHHHHhhHHHHHHHHHHhcchhcCcc
Confidence            44455566777777777665543321         11122222223222  6777777888889999999998854332 


Q ss_pred             --CCCCHHHHHHHHHHHHhcCChhhHHHHHH
Q 036107          364 --CKPDCETHARSLKMCCHKKRMKDGMLVLN  392 (441)
Q Consensus       364 --~~p~~~t~~~li~~~~~~g~~~~a~~~~~  392 (441)
                        -.-+..+...||.+| ..|+.+++.++..
T Consensus       222 f~~sed~r~lenLL~ay-d~gD~E~~~kvl~  251 (308)
T KOG1585|consen  222 FLKSEDSRSLENLLTAY-DEGDIEEIKKVLS  251 (308)
T ss_pred             ccChHHHHHHHHHHHHh-ccCCHHHHHHHHc
Confidence              234556788888887 5688888777544

>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]

Probab=92.04  E-value=8  Score=34.71  Aligned_cols=98  Identities=9%  Similarity=0.032  Sum_probs=74.4

Q ss_pred             HHHHHHHHHHhcCccchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHH--
Q 036107          319 FYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMRE--  396 (441)
Q Consensus       319 ~~~~li~~~~~~g~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~~~~--  396 (441)
                      .|-..+..+.+.-...++..++..+...|+.+.+.+.+++..+.. .-+...|..++.+|.+.|+...|...++-+.+  
T Consensus       139 ~WV~~~R~~l~e~~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~  217 (280)
T COG3629         139 EWVLEQRRALEELFIKALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTL  217 (280)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHh
Confidence            333333444444333558888999999999999999999998654 56778899999999999999999887776665  


Q ss_pred             HHHCCCCCCHHHHHHHHHHHH
Q 036107          397 MLSKGIVPQESTHKMLAEELE  417 (441)
Q Consensus       397 m~~~~~~p~~~~~~~ll~~~~  417 (441)
                      +.+.|+.|...+.....+...
T Consensus       218 ~edlgi~P~~~~~~~y~~~~~  238 (280)
T COG3629         218 AEELGIDPAPELRALYEEILR  238 (280)
T ss_pred             hhhcCCCccHHHHHHHHHHhc
Confidence            234699999998887777743

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=91.89  E-value=3.1  Score=39.73  Aligned_cols=64  Identities=9%  Similarity=0.051  Sum_probs=54.8

Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcH----HHHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 036107          177 DTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSS----QIFDVLIHGWCKTRKSDYAQKAMKEMFQH  241 (441)
Q Consensus       177 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~li~~~~~~~~~~~a~~~~~~m~~~  241 (441)
                      +...++.+-.+|.+.|++++|+..|++.-.- .|+.    ..|..+-.+|.+.|+.++|++.+++..+.
T Consensus        74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL-~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel  141 (453)
T PLN03098         74 TAEDAVNLGLSLFSKGRVKDALAQFETALEL-NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD  141 (453)
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            7889999999999999999999999886332 2442    45999999999999999999999998874

>PRK15331 chaperone protein SicA; Provisional

Probab=91.62  E-value=1.9  Score=35.02  Aligned_cols=86  Identities=9%  Similarity=-0.048  Sum_probs=47.6

Q ss_pred             HhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 036107          223 CKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEAL  302 (441)
Q Consensus       223 ~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~  302 (441)
                      -..|++++|..+|.-+...+.- +..-|..|-.++-..+++++|...|...-..+. -|...+-..-.++...|+.+.|+
T Consensus        48 y~~Gk~~eA~~~F~~L~~~d~~-n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~-~dp~p~f~agqC~l~l~~~~~A~  125 (165)
T PRK15331         48 YNQGRLDEAETFFRFLCIYDFY-NPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK-NDYRPVFFTGQCQLLMRKAAKAR  125 (165)
T ss_pred             HHCCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-CCCCccchHHHHHHHhCCHHHHH
Confidence            4456666666666666553321 233334444445556666777666666544332 13333444555666667777777


Q ss_pred             HHHHHHhh
Q 036107          303 KVYEKMKS  310 (441)
Q Consensus       303 ~~~~~m~~  310 (441)
                      ..|....+
T Consensus       126 ~~f~~a~~  133 (165)
T PRK15331        126 QCFELVNE  133 (165)
T ss_pred             HHHHHHHh
Confidence            76666665

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=91.27  E-value=3.6  Score=36.29  Aligned_cols=98  Identities=11%  Similarity=0.126  Sum_probs=74.4

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC--CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCCC-HHHHHHH
Q 036107          213 QIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFS--PDGVSYTCFIEHYCREKDFRKVDYTLKEMQEK-GCKPS-VITCTIV  288 (441)
Q Consensus       213 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~--p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~-g~~p~-~~~~~~l  288 (441)
                      ..|+.-+.. .+.|++..|...|....+....  -....+-.|..++...|++++|-.+|..+.+. +-.|- ...+--|
T Consensus       143 ~~Y~~A~~~-~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKl  221 (262)
T COG1729         143 KLYNAALDL-YKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKL  221 (262)
T ss_pred             HHHHHHHHH-HHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHH
Confidence            357776664 4667799999999999876311  12345778899999999999999999998765 22222 3567777


Q ss_pred             HHHHHhcCCHHHHHHHHHHHhhC
Q 036107          289 MHALEKAKQIYEALKVYEKMKSD  311 (441)
Q Consensus       289 l~~~~~~~~~~~a~~~~~~m~~~  311 (441)
                      -.+..+.|+.++|..+|++..+.
T Consensus       222 g~~~~~l~~~d~A~atl~qv~k~  244 (262)
T COG1729         222 GVSLGRLGNTDEACATLQQVIKR  244 (262)
T ss_pred             HHHHHHhcCHHHHHHHHHHHHHH
Confidence            78888999999999999998875

>PF13929 mRNA_stabil: mRNA stabilisation

Probab=91.13  E-value=6.8  Score=35.08  Aligned_cols=63  Identities=11%  Similarity=0.104  Sum_probs=31.0

Q ss_pred             CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC-CCCCCHhhHHHHHHHHHhcCCHHHHHHHHH
Q 036107          209 SLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQH-GFSPDGVSYTCFIEHYCREKDFRKVDYTLK  271 (441)
Q Consensus       209 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-g~~p~~~~~~~li~~~~~~g~~~~a~~l~~  271 (441)
                      .++..+.-.+|..+++.+++.+-.++++.-... +..-|..-|..+|+...+.|+..-..++.+
T Consensus       199 ~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~  262 (292)
T PF13929_consen  199 SLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIID  262 (292)
T ss_pred             CCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhh
Confidence            344444555555555555555555555544433 333444555555555555555444444433

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=91.12  E-value=3.3  Score=32.86  Aligned_cols=74  Identities=12%  Similarity=0.104  Sum_probs=50.0

Q ss_pred             HHHhcCCHHHHHHHHHHhhhCCCCc---HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhc
Q 036107          187 TLVKRNSVAHAYKVFLKFKDCISLS---SQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCRE  260 (441)
Q Consensus       187 ~~~~~g~~~~a~~~~~~~~~~~~~~---~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~  260 (441)
                      ...+.|++++|.+.|+.+....+..   ...---|+.+|.+.+++++|...+++..+....-.-+-|...+.|++..
T Consensus        19 ~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~   95 (142)
T PF13512_consen   19 EALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYY   95 (142)
T ss_pred             HHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHH
Confidence            4456788889988888886644433   3344557788888889998888888888753222234566666665543

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=90.86  E-value=5.6  Score=33.15  Aligned_cols=96  Identities=16%  Similarity=0.059  Sum_probs=64.7

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC--HhhHHHHHHHHHhcCCHHHHHHHHHHHHHc---CCCCCH----H
Q 036107          213 QIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPD--GVSYTCFIEHYCREKDFRKVDYTLKEMQEK---GCKPSV----I  283 (441)
Q Consensus       213 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~--~~~~~~li~~~~~~g~~~~a~~l~~~m~~~---g~~p~~----~  283 (441)
                      ..+..+...|++.|+.+.|.+.|.++.+....+.  ...+-.+|......+++..+.....+....   |-.++.    .
T Consensus        37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk  116 (177)
T PF10602_consen   37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK  116 (177)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence            3567788888888888999888888887644433  345677788888888888888887776543   222221    1


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 036107          284 TCTIVMHALEKAKQIYEALKVYEKMKS  310 (441)
Q Consensus       284 ~~~~ll~~~~~~~~~~~a~~~~~~m~~  310 (441)
                      .|..|.  +...+++..|-+.|-+...
T Consensus       117 ~~~gL~--~l~~r~f~~AA~~fl~~~~  141 (177)
T PF10602_consen  117 VYEGLA--NLAQRDFKEAAELFLDSLS  141 (177)
T ss_pred             HHHHHH--HHHhchHHHHHHHHHccCc
Confidence            222222  3456889988888877654

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=90.62  E-value=27  Score=37.52  Aligned_cols=28  Identities=14%  Similarity=0.099  Sum_probs=18.2

Q ss_pred             HHHHHHHHHHHcCC--ChhHHHHHHHHHHH
Q 036107          131 ETYNAMVEALGKSK--KFGLMWELVKEIDE  158 (441)
Q Consensus       131 ~~y~~li~~~~~~~--~~~~a~~l~~~m~~  158 (441)
                      .-.-.+|.+|++.+  .++.|++...+.+.
T Consensus       791 ~~~~~ilTs~vk~~~~~ie~aL~kI~~l~~  820 (1265)
T KOG1920|consen  791 KFNLFILTSYVKSNPPEIEEALQKIKELQL  820 (1265)
T ss_pred             hhhHHHHHHHHhcCcHHHHHHHHHHHHHHh
Confidence            33446777888776  66666666666654

>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]

Probab=90.54  E-value=18  Score=35.18  Aligned_cols=166  Identities=8%  Similarity=0.065  Sum_probs=92.6

Q ss_pred             CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 036107          209 SLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIV  288 (441)
Q Consensus       209 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~l  288 (441)
                      ..|-...-++|..++.+..+.-++.+-.+|..-|  -+-..|-.++..|..+ ..++-..+++++.+..+  |.....-.
T Consensus        63 ~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~df--nDvv~~Re  137 (711)
T COG1747          63 LLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDF--NDVVIGRE  137 (711)
T ss_pred             cccchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcc--hhHHHHHH
Confidence            4455566677777777777777777777777654  4566677777777776 55667777777766544  23333333


Q ss_pred             HHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCccchHHHHHHHHHhcCChhHHHHHHHHHH-HcCCCCC
Q 036107          289 MHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIE-EDSCKPD  367 (441)
Q Consensus       289 l~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~~~li~~~~~~g~~~~a~~~~~~m~-~~g~~p~  367 (441)
                      +.-+...++.+.+..+|.....+-++-....           |-...|.-++.--  ..+.+..+.+..+.. ..|...-
T Consensus       138 La~~yEkik~sk~a~~f~Ka~yrfI~~~q~~-----------~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~  204 (711)
T COG1747         138 LADKYEKIKKSKAAEFFGKALYRFIPRRQNA-----------AIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRG  204 (711)
T ss_pred             HHHHHHHhchhhHHHHHHHHHHHhcchhhhh-----------hHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchH
Confidence            3334444677777777776665432210000           0002333332211  334455555555554 3455555


Q ss_pred             HHHHHHHHHHHHhcCChhhHHHHHH
Q 036107          368 CETHARSLKMCCHKKRMKDGMLVLN  392 (441)
Q Consensus       368 ~~t~~~li~~~~~~g~~~~a~~~~~  392 (441)
                      ...+.-+-.-|....++++|.+++.
T Consensus       205 ~Vl~qdv~~~Ys~~eN~~eai~Ilk  229 (711)
T COG1747         205 SVLMQDVYKKYSENENWTEAIRILK  229 (711)
T ss_pred             HHHHHHHHHHhccccCHHHHHHHHH
Confidence            5556666666666677777755433

>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=90.53  E-value=0.046  Score=43.89  Aligned_cols=53  Identities=9%  Similarity=0.062  Sum_probs=25.2

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 036107          254 IEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYE  306 (441)
Q Consensus       254 i~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~  306 (441)
                      |..+.+.+.++....+++.+...+...+....+.++..|++.++.++..++++
T Consensus        14 i~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~   66 (143)
T PF00637_consen   14 ISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLK   66 (143)
T ss_dssp             HHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTT
T ss_pred             HHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcc
Confidence            33444444455555555555544434445555555555555554455444444

These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=90.47  E-value=12  Score=32.96  Aligned_cols=168  Identities=9%  Similarity=-0.002  Sum_probs=87.8

Q ss_pred             HhcCCHHHHHHHHHHHhhCC--CCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHh-----
Q 036107          223 CKTRKSDYAQKAMKEMFQHG--FSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEK-GCKPSVITCTIVMHALEK-----  294 (441)
Q Consensus       223 ~~~~~~~~a~~~~~~m~~~g--~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~-g~~p~~~~~~~ll~~~~~-----  294 (441)
                      .+.|++++|.+.|+.+...-  -+-...+--.++-++.+.+++++|...+++.... +-.||. -|..-|.+.+.     
T Consensus        45 L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~-dY~~YlkgLs~~~~i~  123 (254)
T COG4105          45 LQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNA-DYAYYLKGLSYFFQID  123 (254)
T ss_pred             HhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCh-hHHHHHHHHHHhccCC
Confidence            34566666666666666431  1112334445555666666777777666665443 333332 23333333322     


Q ss_pred             --cCCHHHHHHHHHHHhh-------CCCCCCHHHHHHH-HHHHHhcCccchHHHHHHHHHhcCChhHHHHHHHHHHHcC-
Q 036107          295 --AKQIYEALKVYEKMKS-------DDCLTDTSFYSSL-IFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDS-  363 (441)
Q Consensus       295 --~~~~~~a~~~~~~m~~-------~g~~~~~~~~~~l-i~~~~~~g~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g-  363 (441)
                        ..+...+.+-|..|.+       +...||...--.. .+.++..     =-.+-+-|.+.|.+..|..-+++|.+.= 
T Consensus       124 ~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~-----Em~IaryY~kr~~~~AA~nR~~~v~e~y~  198 (254)
T COG4105         124 DVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGH-----EMAIARYYLKRGAYVAAINRFEEVLENYP  198 (254)
T ss_pred             ccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHH-----HHHHHHHHHHhcChHHHHHHHHHHHhccc
Confidence              1233333333333332       2223333211111 1111111     1234567889999999999999998751 


Q ss_pred             -CCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHH
Q 036107          364 -CKPDCETHARSLKMCCHKKRMKDGMLVLNLMRE  396 (441)
Q Consensus       364 -~~p~~~t~~~li~~~~~~g~~~~a~~~~~~~~~  396 (441)
                       ..-....+-.+..+|-..|..++|.+.-+++..
T Consensus       199 ~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~  232 (254)
T COG4105         199 DTSAVREALARLEEAYYALGLTDEAKKTAKVLGA  232 (254)
T ss_pred             cccchHHHHHHHHHHHHHhCChHHHHHHHHHHHh
Confidence             122223456677788899999998876555544

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=90.41  E-value=13  Score=33.40  Aligned_cols=111  Identities=6%  Similarity=-0.011  Sum_probs=84.7

Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcHHHHHHHHHHHHhcC---CHHHHHHHHHHHhhCCCCCCHhhHHHH
Q 036107          177 DTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTR---KSDYAQKAMKEMFQHGFSPDGVSYTCF  253 (441)
Q Consensus       177 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~---~~~~a~~~~~~m~~~g~~p~~~~~~~l  253 (441)
                      |...|-.|-..|.+.|++..|..-|....+-..++...+..+-.++....   .-.++.++|+++..... -|+.+-..|
T Consensus       155 d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~-~~iral~lL  233 (287)
T COG4235         155 DAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDP-ANIRALSLL  233 (287)
T ss_pred             CchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCC-ccHHHHHHH
Confidence            88999999999999999999999998886555567777777776655443   45689999999987531 245666666


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 036107          254 IEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMH  290 (441)
Q Consensus       254 i~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~  290 (441)
                      -.++...|++.+|...++.|.+..-  ....+..+|.
T Consensus       234 A~~afe~g~~~~A~~~Wq~lL~~lp--~~~~rr~~ie  268 (287)
T COG4235         234 AFAAFEQGDYAEAAAAWQMLLDLLP--ADDPRRSLIE  268 (287)
T ss_pred             HHHHHHcccHHHHHHHHHHHHhcCC--CCCchHHHHH
Confidence            7789999999999999999988632  2334444443

>PF13929 mRNA_stabil: mRNA stabilisation

Probab=90.22  E-value=13  Score=33.27  Aligned_cols=136  Identities=10%  Similarity=0.099  Sum_probs=98.3

Q ss_pred             cCCHHHHHHHHHHhh--hCCCCcHHHHHHHHHHHHh-cC-CHHHHHHHHHHHhh-CCCCCCHhhHHHHHHHHHhcCCHHH
Q 036107          191 RNSVAHAYKVFLKFK--DCISLSSQIFDVLIHGWCK-TR-KSDYAQKAMKEMFQ-HGFSPDGVSYTCFIEHYCREKDFRK  265 (441)
Q Consensus       191 ~g~~~~a~~~~~~~~--~~~~~~~~~~~~li~~~~~-~~-~~~~a~~~~~~m~~-~g~~p~~~~~~~li~~~~~~g~~~~  265 (441)
                      ...+.+|+.+|+...  +.+--|..+...+++.... .+ ....-.++.+-+.. .|-.++..+...+|..+++.++|.+
T Consensus       141 N~~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~k  220 (292)
T PF13929_consen  141 NKIVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNK  220 (292)
T ss_pred             hHHHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHH
Confidence            455678888887552  3466777888888877765 22 34444455555443 3466888899999999999999999


Q ss_pred             HHHHHHHHHHc-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH-----HhhCCCCCCHHHHHHHHHH
Q 036107          266 VDYTLKEMQEK-GCKPSVITCTIVMHALEKAKQIYEALKVYEK-----MKSDDCLTDTSFYSSLIFI  326 (441)
Q Consensus       266 a~~l~~~m~~~-g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~-----m~~~g~~~~~~~~~~li~~  326 (441)
                      ..+++..-... +..-|...|...|+.....|+..-..++.++     +++.|+..+...-..+-..
T Consensus       221 l~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~GhLLwikR~~V~v~~~L~~~L~~L  287 (292)
T PF13929_consen  221 LFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDDGHLLWIKRNNVDVTDELRSQLSEL  287 (292)
T ss_pred             HHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhCCCeEEeeecCCcCCHHHHHHHHHH
Confidence            99999887665 6666889999999999999999888877764     3556666666554444333

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=90.00  E-value=10  Score=31.60  Aligned_cols=125  Identities=7%  Similarity=-0.033  Sum_probs=68.7

Q ss_pred             CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC---CCCCCHHHH
Q 036107          244 SPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSD---DCLTDTSFY  320 (441)
Q Consensus       244 ~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~---g~~~~~~~~  320 (441)
                      .|++..--.|-.+..+.|+..+|...|++-..--..-|....-.+-++....+++..|...++.+-+.   +-.||.   
T Consensus        86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~---  162 (251)
T COG4700          86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDG---  162 (251)
T ss_pred             chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCc---
Confidence            35555555666666666666666666666655434445556666666666666666666666666553   223333   


Q ss_pred             HHHHHHHHhcCccchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHH
Q 036107          321 SSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGM  388 (441)
Q Consensus       321 ~~li~~~~~~g~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~  388 (441)
                                     --.+-..|...|++.+|..-|+.....  -|+...-.-.-..+.+.|+.+++.
T Consensus       163 ---------------~Ll~aR~laa~g~~a~Aesafe~a~~~--ypg~~ar~~Y~e~La~qgr~~ea~  213 (251)
T COG4700         163 ---------------HLLFARTLAAQGKYADAESAFEVAISY--YPGPQARIYYAEMLAKQGRLREAN  213 (251)
T ss_pred             ---------------hHHHHHHHHhcCCchhHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcchhHHH
Confidence                           334445566666666666666666543  233322211222334555555443

>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]

Probab=89.85  E-value=19  Score=34.42  Aligned_cols=81  Identities=7%  Similarity=0.148  Sum_probs=67.1

Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHH
Q 036107          177 DTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEH  256 (441)
Q Consensus       177 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~  256 (441)
                      |..+|-.||.-+...|..++..+++++|.+-++--...|..-|.+=...++++.++.+|.+.....+  +...|..-++-
T Consensus        41 nI~S~fqLiq~~~tq~s~~~~re~yeq~~~pfp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~l--~ldLW~lYl~Y  118 (660)
T COG5107          41 NILSYFQLIQYLETQESMDAEREMYEQLSSPFPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKSL--NLDLWMLYLEY  118 (660)
T ss_pred             hHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCCccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhhc--cHhHHHHHHHH
Confidence            7899999999999999999999999999877777777899989888888899999999999987654  45556665554


Q ss_pred             HHh
Q 036107          257 YCR  259 (441)
Q Consensus       257 ~~~  259 (441)
                      -.+
T Consensus       119 IRr  121 (660)
T COG5107         119 IRR  121 (660)
T ss_pred             HHh
Confidence            333

>KOG2610 consensus Uncharacterized conserved protein [Function unknown]

Probab=89.82  E-value=13  Score=33.90  Aligned_cols=153  Identities=10%  Similarity=-0.014  Sum_probs=104.9

Q ss_pred             HHcCCChhHHHHHHHHHHHhcCCCccHHHHHHHHhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcHHHH----
Q 036107          140 LGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIF----  215 (441)
Q Consensus       140 ~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~----  215 (441)
                      +--+|++.+|-..++++..   .+|+           |..++...=.+|...|+.+.-...++++-....++...|    
T Consensus       113 ~~~~g~~h~a~~~wdklL~---d~Pt-----------Dlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~  178 (491)
T KOG2610|consen  113 LWGRGKHHEAAIEWDKLLD---DYPT-----------DLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVH  178 (491)
T ss_pred             hhccccccHHHHHHHHHHH---hCch-----------hhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHH
Confidence            3456788888888998887   3443           777778888888899999988888888744333444333    


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHc---CCCCCHHHHHHHHHHH
Q 036107          216 DVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEK---GCKPSVITCTIVMHAL  292 (441)
Q Consensus       216 ~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~---g~~p~~~~~~~ll~~~  292 (441)
                      ..+--++..+|-+++|++.-++-.+-+ +-|.-.-.++-..+--.|++.++.++..+-...   +-..-.+-|-...-.+
T Consensus       179 GmyaFgL~E~g~y~dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~  257 (491)
T KOG2610|consen  179 GMYAFGLEECGIYDDAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFH  257 (491)
T ss_pred             HHHHhhHHHhccchhHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhh
Confidence            334445668899999999988877643 235556667777777889999998877654332   1111122233333345


Q ss_pred             HhcCCHHHHHHHHHH
Q 036107          293 EKAKQIYEALKVYEK  307 (441)
Q Consensus       293 ~~~~~~~~a~~~~~~  307 (441)
                      ...+.++.|+++|+.
T Consensus       258 iE~aeye~aleIyD~  272 (491)
T KOG2610|consen  258 IEGAEYEKALEIYDR  272 (491)
T ss_pred             hcccchhHHHHHHHH
Confidence            666999999999975

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=89.81  E-value=27  Score=36.12  Aligned_cols=166  Identities=13%  Similarity=0.169  Sum_probs=108.8

Q ss_pred             HHHHHHHHHHHHcCCChhHHHHHHHHHHHh---cC---CCccHHHHHHHHhhcCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 036107          130 PETYNAMVEALGKSKKFGLMWELVKEIDEL---SN---GYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLK  203 (441)
Q Consensus       130 ~~~y~~li~~~~~~~~~~~a~~l~~~m~~~---~~---~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~  203 (441)
                      ..+.+.++.+|...+++-.-.-++++....   ..   .+.+.+   .............-+..+.+...++.|..+-+.
T Consensus       283 ~ss~~~i~~~~d~~n~~v~ys~vl~~l~d~l~~w~~~~~vltsd---g~~~~L~ek~le~kL~iL~kK~ly~~Ai~LAk~  359 (933)
T KOG2114|consen  283 NSSSNRIFKAYDLRNRYVLYSSVLEDLSDNLIEWSFDCLVLTSD---GVVHELIEKDLETKLDILFKKNLYKVAINLAKS  359 (933)
T ss_pred             ccchhheeehhhhcCcccchHHhHHHHHHHHHhcCCcEEEEecC---CceeeeeeccHHHHHHHHHHhhhHHHHHHHHHh
Confidence            345678888888887765554444444331   10   000100   011122445566778888999999999888766


Q ss_pred             hhhCCCCcHHHHHHHH----HHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 036107          204 FKDCISLSSQIFDVLI----HGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCK  279 (441)
Q Consensus       204 ~~~~~~~~~~~~~~li----~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~  279 (441)
                      -..    +..+...+.    +.+-+.|++++|...|-+-... +.|     .-+|.-|.......+--..++.+.+.|+.
T Consensus       360 ~~~----d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~-----s~Vi~kfLdaq~IknLt~YLe~L~~~gla  429 (933)
T KOG2114|consen  360 QHL----DEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEP-----SEVIKKFLDAQRIKNLTSYLEALHKKGLA  429 (933)
T ss_pred             cCC----CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CCh-----HHHHHHhcCHHHHHHHHHHHHHHHHcccc
Confidence            532    333333344    3445789999999988776542 233     24556666667777788888888898886


Q ss_pred             CCHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 036107          280 PSVITCTIVMHALEKAKQIYEALKVYEKMK  309 (441)
Q Consensus       280 p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~  309 (441)
                       +...-+.||.+|.+.++.++-.++.+.-.
T Consensus       430 -~~dhttlLLncYiKlkd~~kL~efI~~~~  458 (933)
T KOG2114|consen  430 -NSDHTTLLLNCYIKLKDVEKLTEFISKCD  458 (933)
T ss_pred             -cchhHHHHHHHHHHhcchHHHHHHHhcCC
Confidence             66777899999999999998887776655

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=89.59  E-value=8.7  Score=35.97  Aligned_cols=122  Identities=11%  Similarity=0.092  Sum_probs=84.3

Q ss_pred             HHHHhcCCHHHHHHHHHHhhh------CC---------CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhH
Q 036107          186 DTLVKRNSVAHAYKVFLKFKD------CI---------SLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSY  250 (441)
Q Consensus       186 ~~~~~~g~~~~a~~~~~~~~~------~~---------~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~  250 (441)
                      +.+.+.|++..|..-|++...      ..         ..-..+++.|.-+|.|.+++..|++.-+.....+ ++|+-..
T Consensus       216 n~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KAL  294 (397)
T KOG0543|consen  216 NVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKAL  294 (397)
T ss_pred             hHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhHH
Confidence            367788999999888876411      11         1223357778888899999999999888887753 3567677


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHH-HHHHHHhcCCH-HHHHHHHHHHhh
Q 036107          251 TCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTI-VMHALEKAKQI-YEALKVYEKMKS  310 (441)
Q Consensus       251 ~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~-ll~~~~~~~~~-~~a~~~~~~m~~  310 (441)
                      -.--.++...|+++.|...|+.+.+.  .|+...-.. |+..-.+..+. +...++|..|-.
T Consensus       295 yRrG~A~l~~~e~~~A~~df~ka~k~--~P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF~  354 (397)
T KOG0543|consen  295 YRRGQALLALGEYDLARDDFQKALKL--EPSNKAARAELIKLKQKIREYEEKEKKMYANMFA  354 (397)
T ss_pred             HHHHHHHHhhccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            77778888899999999999999874  455444444 44333344443 344678887755

>KOG4570 consensus Uncharacterized conserved protein [Function unknown]

Probab=89.32  E-value=8.1  Score=34.91  Aligned_cols=103  Identities=18%  Similarity=0.164  Sum_probs=69.9

Q ss_pred             CCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC---CCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH
Q 036107          207 CISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQH---GFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVI  283 (441)
Q Consensus       207 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~---g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~  283 (441)
                      |.+.++.+...++..-.....++.+...+-+++..   -..|+...| +++.-+. .-+.++++.++..=.+-|+-||-+
T Consensus        59 g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~-~~irlll-ky~pq~~i~~l~npIqYGiF~dqf  136 (418)
T KOG4570|consen   59 GLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIH-TWIRLLL-KYDPQKAIYTLVNPIQYGIFPDQF  136 (418)
T ss_pred             CCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHH-HHHHHHH-ccChHHHHHHHhCcchhccccchh
Confidence            45566666777777766677788888887777643   122222222 2233222 235678888888777888888888


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 036107          284 TCTIVMHALEKAKQIYEALKVYEKMKSD  311 (441)
Q Consensus       284 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~  311 (441)
                      +++.+|+.+.+.+++.+|.++...|...
T Consensus       137 ~~c~l~D~flk~~n~~~aa~vvt~~~~q  164 (418)
T KOG4570|consen  137 TFCLLMDSFLKKENYKDAASVVTEVMMQ  164 (418)
T ss_pred             hHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence            8888888888888888888877776654

>PRK15331 chaperone protein SicA; Provisional

Probab=89.06  E-value=5.3  Score=32.55  Aligned_cols=88  Identities=9%  Similarity=-0.126  Sum_probs=67.5

Q ss_pred             HHhcCCHHHHHHHHHHhhhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHH
Q 036107          188 LVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVD  267 (441)
Q Consensus       188 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~  267 (441)
                      +-..|++++|..+|.-+.---..+..-|..|-.++-..+.+++|...|......+. -|+..+--.-.++...|+.+.|.
T Consensus        47 ~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~-~dp~p~f~agqC~l~l~~~~~A~  125 (165)
T PRK15331         47 FYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK-NDYRPVFFTGQCQLLMRKAAKAR  125 (165)
T ss_pred             HHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-CCCCccchHHHHHHHhCCHHHHH
Confidence            34679999999999987432234455577777888888999999999987765443 34455556667788999999999


Q ss_pred             HHHHHHHHc
Q 036107          268 YTLKEMQEK  276 (441)
Q Consensus       268 ~l~~~m~~~  276 (441)
                      ..|....+.
T Consensus       126 ~~f~~a~~~  134 (165)
T PRK15331        126 QCFELVNER  134 (165)
T ss_pred             HHHHHHHhC
Confidence            999988774

>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=88.48  E-value=0.041  Score=44.19  Aligned_cols=85  Identities=15%  Similarity=0.164  Sum_probs=47.3

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 036107          218 LIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQ  297 (441)
Q Consensus       218 li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~  297 (441)
                      +|..+.+.+.++...++++.+...+-.-+....+.++..|++.+..++..++++..       +..-...++..|.+.|.
T Consensus        13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~-------~~yd~~~~~~~c~~~~l   85 (143)
T PF00637_consen   13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTS-------NNYDLDKALRLCEKHGL   85 (143)
T ss_dssp             CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSS-------SSS-CTHHHHHHHTTTS
T ss_pred             HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccc-------cccCHHHHHHHHHhcch
Confidence            45555566666666666666665544455666666666666666556666665511       11223445555666666


Q ss_pred             HHHHHHHHHHHh
Q 036107          298 IYEALKVYEKMK  309 (441)
Q Consensus       298 ~~~a~~~~~~m~  309 (441)
                      ++++.-++.++.
T Consensus        86 ~~~a~~Ly~~~~   97 (143)
T PF00637_consen   86 YEEAVYLYSKLG   97 (143)
T ss_dssp             HHHHHHHHHCCT
T ss_pred             HHHHHHHHHHcc
Confidence            666666555543

These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.

>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1

Probab=88.28  E-value=6.4  Score=29.70  Aligned_cols=65  Identities=12%  Similarity=0.122  Sum_probs=42.6

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCccchHHHHHHHHHhcCChhHHHHHHHHHHH
Q 036107          286 TIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEE  361 (441)
Q Consensus       286 ~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  361 (441)
                      ++|+.+|... +......++.       .||.-.....-..+.+.++   |..++.-|...|..++|++++.+..+
T Consensus         3 TaLlk~Yl~~-~~~~l~~llr-------~~N~C~~~~~e~~L~~~~~---~~eL~~lY~~kg~h~~AL~ll~~l~~   67 (108)
T PF10366_consen    3 TALLKCYLET-NPSLLGPLLR-------LPNYCDLEEVEEVLKEHGK---YQELVDLYQGKGLHRKALELLKKLAD   67 (108)
T ss_pred             HHHHHHHHHh-CHHHHHHHHc-------cCCcCCHHHHHHHHHHcCC---HHHHHHHHHccCccHHHHHHHHHHhc
Confidence            4566666666 5544444433       2233333334444444444   99999999999999999999999876

Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=88.15  E-value=18  Score=31.88  Aligned_cols=175  Identities=11%  Similarity=0.075  Sum_probs=106.0

Q ss_pred             hhHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC-CCCCCHHHHHHHH
Q 036107          248 VSYTCFIEHYCREKDFRKVDYTLKEMQEKG--CKPSVITCTIVMHALEKAKQIYEALKVYEKMKSD-DCLTDTSFYSSLI  324 (441)
Q Consensus       248 ~~~~~li~~~~~~g~~~~a~~l~~~m~~~g--~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~-g~~~~~~~~~~li  324 (441)
                      ..|+.-+. -.+.|++++|.+.|+.+....  -+-...+--.++-++.+.++++.|....++.... +-.||.. |..-|
T Consensus        36 ~LY~~g~~-~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~d-Y~~Yl  113 (254)
T COG4105          36 ELYNEGLT-ELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNAD-YAYYL  113 (254)
T ss_pred             HHHHHHHH-HHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChh-HHHHH
Confidence            34444443 456799999999999998652  2334667777888999999999999999998774 4455543 33333


Q ss_pred             HHHHhcCccchHHHHHHHHHhcCChh---HHHHHHHHHHH----cCCCCCHHHH------------HHHHHHHHhcCChh
Q 036107          325 FILSKAVRFLIYNTMISSACVRSEEG---NALKLRQKIEE----DSCKPDCETH------------ARSLKMCCHKKRMK  385 (441)
Q Consensus       325 ~~~~~~g~~~~~~~li~~~~~~g~~~---~a~~~~~~m~~----~g~~p~~~t~------------~~li~~~~~~g~~~  385 (441)
                      .+++..-..         =-...+..   .|..-|++++.    ..-.||...-            ..+-+-|.+.|.+.
T Consensus       114 kgLs~~~~i---------~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~  184 (254)
T COG4105         114 KGLSYFFQI---------DDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYV  184 (254)
T ss_pred             HHHHHhccC---------CccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChH
Confidence            333322111         00011222   22333333322    1223333321            23445677888887


Q ss_pred             hHHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHh
Q 036107          386 DGMLVLNLMREMLSK--GIVPQESTHKMLAEELEKKSLGNAKERIDELLTHAT  436 (441)
Q Consensus       386 ~a~~~~~~~~~m~~~--~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~  436 (441)
                      .|..   .+++|.+.  ...-....+-.+..+|.+.|..++|.+.-+-+....
T Consensus       185 AA~n---R~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N~  234 (254)
T COG4105         185 AAIN---RFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGANY  234 (254)
T ss_pred             HHHH---HHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhcC
Confidence            7744   77777765  222233466777888999999999998887776443

>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia

Probab=87.79  E-value=13  Score=30.11  Aligned_cols=116  Identities=14%  Similarity=0.115  Sum_probs=57.7

Q ss_pred             HHHHHHHHHHH---HhcCCHHHHHHHHHHhhhCCCCc---HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHH
Q 036107          178 TRAMSVLMDTL---VKRNSVAHAYKVFLKFKDCISLS---SQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYT  251 (441)
Q Consensus       178 ~~~~~~li~~~---~~~g~~~~a~~~~~~~~~~~~~~---~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~  251 (441)
                      ..+.+.||...   .+.++.+++..++..++- .+|.   ..++...  .+.+.|++.+|.++|+++...+  |....-.
T Consensus         7 ~~iv~gLie~~~~al~~~~~~D~e~lL~ALrv-LRP~~~e~~~~~~~--l~i~r~~w~dA~rlLr~l~~~~--~~~p~~k   81 (160)
T PF09613_consen    7 DEIVGGLIEVLSVALRLGDPDDAEALLDALRV-LRPEFPELDLFDGW--LHIVRGDWDDALRLLRELEERA--PGFPYAK   81 (160)
T ss_pred             HHHHHHHHHHHHHHHccCChHHHHHHHHHHHH-hCCCchHHHHHHHH--HHHHhCCHHHHHHHHHHHhccC--CCChHHH
Confidence            34444444433   456778888888777642 2233   3333333  3467788888888888876642  3333344


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 036107          252 CFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEA  301 (441)
Q Consensus       252 ~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a  301 (441)
                      .|+..|.....-..=...-+++.+.+-.|+.   ..++..+....+...|
T Consensus        82 ALlA~CL~~~~D~~Wr~~A~evle~~~d~~a---~~Lv~~Ll~~~~~~~a  128 (160)
T PF09613_consen   82 ALLALCLYALGDPSWRRYADEVLESGADPDA---RALVRALLARADLEPA  128 (160)
T ss_pred             HHHHHHHHHcCChHHHHHHHHHHhcCCChHH---HHHHHHHHHhccccch
Confidence            4554444433222222233345555444443   3344444444444333

>KOG4570 consensus Uncharacterized conserved protein [Function unknown]

Probab=87.33  E-value=4  Score=36.74  Aligned_cols=99  Identities=12%  Similarity=0.230  Sum_probs=73.2

Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhC----CCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHH
Q 036107          177 DTRAMSVLMDTLVKRNSVAHAYKVFLKFKDC----ISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTC  252 (441)
Q Consensus       177 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~  252 (441)
                      ...+...++.......+++.++..+-.++..    ..|+.. -.+.++-+. .-+++++..++..=.+.|+-||..+++.
T Consensus        63 s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~-~~~~irlll-ky~pq~~i~~l~npIqYGiF~dqf~~c~  140 (418)
T KOG4570|consen   63 SSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWT-IHTWIRLLL-KYDPQKAIYTLVNPIQYGIFPDQFTFCL  140 (418)
T ss_pred             ceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhcccc-HHHHHHHHH-ccChHHHHHHHhCcchhccccchhhHHH
Confidence            3445556666666778899999888777541    222222 222334333 3478899999999999999999999999


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHcC
Q 036107          253 FIEHYCREKDFRKVDYTLKEMQEKG  277 (441)
Q Consensus       253 li~~~~~~g~~~~a~~l~~~m~~~g  277 (441)
                      +|+.+.+.+++.+|.++..+|....
T Consensus       141 l~D~flk~~n~~~aa~vvt~~~~qe  165 (418)
T KOG4570|consen  141 LMDSFLKKENYKDAASVVTEVMMQE  165 (418)
T ss_pred             HHHHHHhcccHHHHHHHHHHHHHHH
Confidence            9999999999999999888876553

>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va

Probab=87.10  E-value=5.2  Score=29.17  Aligned_cols=62  Identities=13%  Similarity=0.229  Sum_probs=40.7

Q ss_pred             CHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHH
Q 036107          227 KSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEK-GCKPSVITCTIVMH  290 (441)
Q Consensus       227 ~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~-g~~p~~~~~~~ll~  290 (441)
                      +.-++.+-++.+....+.|++....+.+++|.+.+|+.-|.++|+-.+.. |.  +...|..+++
T Consensus        22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~--~~~~y~~~lq   84 (103)
T cd00923          22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCGA--HKEIYPYILQ   84 (103)
T ss_pred             cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccC--chhhHHHHHH
Confidence            34456666677776777777777777777777777777777777766633 22  3345555543

Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=86.85  E-value=25  Score=33.00  Aligned_cols=133  Identities=11%  Similarity=0.023  Sum_probs=90.1

Q ss_pred             HHHcCCChhHHHHHHHHHHHhc---CCCccHHHHHHHHhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcHHHH
Q 036107          139 ALGKSKKFGLMWELVKEIDELS---NGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIF  215 (441)
Q Consensus       139 ~~~~~~~~~~a~~l~~~m~~~~---~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~  215 (441)
                      .|.+.|++..|...|+.....-   ...+...  .......-..++..|.-++.+.+++..|++.-+..-.--+.|....
T Consensus       217 ~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee--~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KAL  294 (397)
T KOG0543|consen  217 VLFKEGKFKLAKKRYERAVSFLEYRRSFDEEE--QKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKAL  294 (397)
T ss_pred             HHHhhchHHHHHHHHHHHHHHhhccccCCHHH--HHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHH
Confidence            5678888988888888755421   0111111  1111122356778888899999999999999988754446677666


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHh-cCC-HHHHHHHHHHHHH
Q 036107          216 DVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCR-EKD-FRKVDYTLKEMQE  275 (441)
Q Consensus       216 ~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~-~g~-~~~a~~l~~~m~~  275 (441)
                      -.=-.++...|+++.|+..|+.+.+  +.|+-..-+.=|..|.+ ..+ .+...++|..|..
T Consensus       295 yRrG~A~l~~~e~~~A~~df~ka~k--~~P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF~  354 (397)
T KOG0543|consen  295 YRRGQALLALGEYDLARDDFQKALK--LEPSNKAARAELIKLKQKIREYEEKEKKMYANMFA  354 (397)
T ss_pred             HHHHHHHHhhccHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            6667888999999999999999998  46776666555555543 333 3445677777754

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=86.47  E-value=22  Score=34.45  Aligned_cols=75  Identities=13%  Similarity=0.055  Sum_probs=50.1

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHhhCCCC-CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CCHHHHHHHHH
Q 036107          216 DVLIHGWCKTRKSDYAQKAMKEMFQHGFS-PDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCK-PSVITCTIVMH  290 (441)
Q Consensus       216 ~~li~~~~~~~~~~~a~~~~~~m~~~g~~-p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~-p~~~~~~~ll~  290 (441)
                      ..+-.++-+.|+.++|.+.|.+|.+..-. -+......||.++...+.+.++..++.+-.+...+ .-..+|+..+-
T Consensus       263 rRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALL  339 (539)
T PF04184_consen  263 RRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAALL  339 (539)
T ss_pred             HHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHH
Confidence            34555666778888888888888754211 13346777888888888888888888887544332 22456666553

The molecular function of this protein is uncertain.

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=86.45  E-value=2.9  Score=25.41  Aligned_cols=32  Identities=13%  Similarity=0.070  Sum_probs=27.5

Q ss_pred             HHHHHHHHHHHcCCChhHHHHHHHHHHHhcCC
Q 036107          131 ETYNAMVEALGKSKKFGLMWELVKEIDELSNG  162 (441)
Q Consensus       131 ~~y~~li~~~~~~~~~~~a~~l~~~m~~~~~~  162 (441)
                      .+|..+-..|.+.|++++|.++|++..+..|.
T Consensus         2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~   33 (44)
T PF13428_consen    2 AAWLALARAYRRLGQPDEAERLLRRALALDPD   33 (44)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence            45778889999999999999999999996643

>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=86.21  E-value=22  Score=31.06  Aligned_cols=205  Identities=10%  Similarity=-0.005  Sum_probs=97.4

Q ss_pred             HHHHHhcCCHHHHHHHHHHhhhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHH
Q 036107          185 MDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFR  264 (441)
Q Consensus       185 i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~  264 (441)
                      -.+|-...++++|...+.+..++...+...|.+       ...++.|--+.++|..-  .--+..|+--...|.++|..+
T Consensus        38 AvafRnAk~feKakdcLlkA~~~yEnnrslfhA-------AKayEqaamLake~~kl--sEvvdl~eKAs~lY~E~Gspd  108 (308)
T KOG1585|consen   38 AVAFRNAKKFEKAKDCLLKASKGYENNRSLFHA-------AKAYEQAAMLAKELSKL--SEVVDLYEKASELYVECGSPD  108 (308)
T ss_pred             HHHHHhhccHHHHHHHHHHHHHHHHhcccHHHH-------HHHHHHHHHHHHHHHHh--HHHHHHHHHHHHHHHHhCCcc
Confidence            345566677777766555443333333333333       23455666666666542  112345666666777777777


Q ss_pred             HHHHHHHHHHH--cCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCccchHHHHH
Q 036107          265 KVDYTLKEMQE--KGCKPSV--ITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMI  340 (441)
Q Consensus       265 ~a~~l~~~m~~--~g~~p~~--~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~~~li  340 (441)
                      -|-..++..-+  +++.|+.  ..|.--+......++...|.++                               +...-
T Consensus       109 tAAmaleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~el-------------------------------~gk~s  157 (308)
T KOG1585|consen  109 TAAMALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFEL-------------------------------YGKCS  157 (308)
T ss_pred             hHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHH-------------------------------HHHhh
Confidence            66665555432  1233332  1222222222222222222222                               33333


Q ss_pred             HHHHhcCChhHHHHHHHHHHH----cCCCCCH-HHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 036107          341 SSACVRSEEGNALKLRQKIEE----DSCKPDC-ETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEE  415 (441)
Q Consensus       341 ~~~~~~g~~~~a~~~~~~m~~----~g~~p~~-~t~~~li~~~~~~g~~~~a~~~~~~~~~m~~~~~~p~~~~~~~ll~~  415 (441)
                      ..+++..++++|-..+.+-..    ..--|+. ..|...|-.+.-..++..|++.++--.+.-...-.-+..+...|+.+
T Consensus       158 r~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~a  237 (308)
T KOG1585|consen  158 RVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTA  237 (308)
T ss_pred             hHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHH
Confidence            345555555555444433221    1112232 23555555556666777887743321111111112345677778777


Q ss_pred             HHhcCCccHHHHHHH
Q 036107          416 LEKKSLGNAKERIDE  430 (441)
Q Consensus       416 ~~~~g~~~~a~~~~~  430 (441)
                      | ..|+.+++.++..
T Consensus       238 y-d~gD~E~~~kvl~  251 (308)
T KOG1585|consen  238 Y-DEGDIEEIKKVLS  251 (308)
T ss_pred             h-ccCCHHHHHHHHc
Confidence            6 4577777776653

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=85.98  E-value=1.8  Score=24.99  Aligned_cols=25  Identities=8%  Similarity=0.013  Sum_probs=18.9

Q ss_pred             HHHHHHHHHhcCChhHHHHHHHHHH
Q 036107          336 YNTMISSACVRSEEGNALKLRQKIE  360 (441)
Q Consensus       336 ~~~li~~~~~~g~~~~a~~~~~~m~  360 (441)
                      |+.|-..|.+.|++++|+++|++..
T Consensus         2 l~~Lg~~~~~~g~~~~Ai~~y~~aL   26 (36)
T PF13176_consen    2 LNNLGRIYRQQGDYEKAIEYYEQAL   26 (36)
T ss_dssp             HHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            6777788888888888888888743

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=85.81  E-value=2.1  Score=24.72  Aligned_cols=26  Identities=12%  Similarity=0.125  Sum_probs=17.5

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHh
Q 036107          284 TCTIVMHALEKAKQIYEALKVYEKMK  309 (441)
Q Consensus       284 ~~~~ll~~~~~~~~~~~a~~~~~~m~  309 (441)
                      +|+.|-..|.+.|++++|..+|++..
T Consensus         1 al~~Lg~~~~~~g~~~~Ai~~y~~aL   26 (36)
T PF13176_consen    1 ALNNLGRIYRQQGDYEKAIEYYEQAL   26 (36)
T ss_dssp             HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            35667777777777777777777643

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=85.64  E-value=27  Score=31.47  Aligned_cols=122  Identities=11%  Similarity=0.052  Sum_probs=84.9

Q ss_pred             HHHhcCCHHHHHHHHHHhhhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHH
Q 036107          187 TLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKV  266 (441)
Q Consensus       187 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a  266 (441)
                      .....|++.+|..+|.......+-+...--.+..+|...|+.+.|..++..+...--.........-|..+.+.....+.
T Consensus       143 ~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~~  222 (304)
T COG3118         143 ELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPEI  222 (304)
T ss_pred             hhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCCH
Confidence            45567999999999988754444456667788999999999999999999987643222233333445555555555555


Q ss_pred             HHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 036107          267 DYTLKEMQEKGCKP-SVITCTIVMHALEKAKQIYEALKVYEKMKSD  311 (441)
Q Consensus       267 ~~l~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~  311 (441)
                      ..+-++.-..   | |...-..+-..+...|+.+.|.+.+-.+.++
T Consensus       223 ~~l~~~~aad---Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~  265 (304)
T COG3118         223 QDLQRRLAAD---PDDVEAALALADQLHLVGRNEAALEHLLALLRR  265 (304)
T ss_pred             HHHHHHHHhC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            5555555443   4 5666667778889999999998877766654

>PF13762 MNE1: Mitochondrial splicing apparatus component

Probab=85.48  E-value=17  Score=29.02  Aligned_cols=100  Identities=13%  Similarity=0.098  Sum_probs=62.0

Q ss_pred             HHHHHcCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCccchHHHHHHHHHhcCC
Q 036107          271 KEMQEKGCKPSV--ITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSE  348 (441)
Q Consensus       271 ~~m~~~g~~p~~--~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~~~li~~~~~~g~  348 (441)
                      ..|++.+..++.  ...++++.....-+++.....+++.+...        ....+.+..+.   ..|++++.+.++..-
T Consensus        26 ~y~~~~~~~~~~k~~fiN~iL~hl~~~~nf~~~v~~L~~l~~l--------~~~~~~~~~~~---ssf~~if~SlsnSsS   94 (145)
T PF13762_consen   26 PYMQEENASQSTKTIFINCILNHLASYQNFSGVVSILEHLHFL--------NTDNIIGWLDN---SSFHIIFKSLSNSSS   94 (145)
T ss_pred             HHhhhcccChhHHHHHHHHHHHHHHHccchHHHHHHHHHHHHh--------hHHHHhhhccc---chHHHHHHHHccChH
Confidence            344555555554  34577777777778888888888777221        01111111111   347777777755554


Q ss_pred             -hhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 036107          349 -EGNALKLRQKIEEDSCKPDCETHARSLKMCCHK  381 (441)
Q Consensus       349 -~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~  381 (441)
                       ---+..+|.-|++.+.+++..-|..+|.++.+.
T Consensus        95 aK~~~~~Lf~~Lk~~~~~~t~~dy~~li~~~l~g  128 (145)
T PF13762_consen   95 AKLTSLTLFNFLKKNDIEFTPSDYSCLIKAALRG  128 (145)
T ss_pred             HHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcC
Confidence             234667777787777888888888888887654

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=85.33  E-value=3  Score=25.33  Aligned_cols=26  Identities=12%  Similarity=0.294  Sum_probs=14.2

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHhh
Q 036107          215 FDVLIHGWCKTRKSDYAQKAMKEMFQ  240 (441)
Q Consensus       215 ~~~li~~~~~~~~~~~a~~~~~~m~~  240 (441)
                      +..+-..|...|++++|.++|++..+
T Consensus         4 ~~~la~~~~~~G~~~~A~~~~~~~l~   29 (44)
T PF13428_consen    4 WLALARAYRRLGQPDEAERLLRRALA   29 (44)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            44445555555555555555555554

>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1

Probab=85.18  E-value=8.4  Score=28.47  Aligned_cols=47  Identities=15%  Similarity=0.264  Sum_probs=30.7

Q ss_pred             HHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 036107          230 YAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEK  276 (441)
Q Consensus       230 ~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~  276 (441)
                      +..+-++.+....+.|++.+..+.+.+|.+.+++..|.++|+-++..
T Consensus        28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K   74 (108)
T PF02284_consen   28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDK   74 (108)
T ss_dssp             HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence            55666666666677777777777777777777777777777777654

9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=85.12  E-value=16  Score=28.49  Aligned_cols=89  Identities=15%  Similarity=0.028  Sum_probs=55.5

Q ss_pred             HHHcCCChhHHHHHHHHHHHhcCCCccHHHHHHHHhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhh--CCCCcHHHHH
Q 036107          139 ALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKD--CISLSSQIFD  216 (441)
Q Consensus       139 ~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~~~  216 (441)
                      +++..|+.+.|++.|.+.....|.              ....||.--.++.-.|+.++|++=+++.-+  |-+ +.....
T Consensus        52 alaE~g~Ld~AlE~F~qal~l~P~--------------raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~-trtacq  116 (175)
T KOG4555|consen   52 ALAEAGDLDGALELFGQALCLAPE--------------RASAYNNRAQALRLQGDDEEALDDLNKALELAGDQ-TRTACQ  116 (175)
T ss_pred             HHHhccchHHHHHHHHHHHHhccc--------------chHhhccHHHHHHHcCChHHHHHHHHHHHHhcCcc-chHHHH
Confidence            456778888888888877664322              567778777888888888888777766522  212 222222


Q ss_pred             HH---HHHHHhcCCHHHHHHHHHHHhhCC
Q 036107          217 VL---IHGWCKTRKSDYAQKAMKEMFQHG  242 (441)
Q Consensus       217 ~l---i~~~~~~~~~~~a~~~~~~m~~~g  242 (441)
                      +.   -..|-..|+.+.|..=|+..-+.|
T Consensus       117 a~vQRg~lyRl~g~dd~AR~DFe~AA~LG  145 (175)
T KOG4555|consen  117 AFVQRGLLYRLLGNDDAARADFEAAAQLG  145 (175)
T ss_pred             HHHHHHHHHHHhCchHHHHHhHHHHHHhC
Confidence            22   234556677777777776665544

>PF13762 MNE1: Mitochondrial splicing apparatus component

Probab=84.75  E-value=18  Score=28.81  Aligned_cols=102  Identities=11%  Similarity=0.057  Sum_probs=71.8

Q ss_pred             HHhhCCCCCCHHHHHHHHHHHHhcCccchHHHHHHHHHhcCChhHHHHHHHHHHHcC-----CCCCHHHHHHHHHHHHhc
Q 036107          307 KMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDS-----CKPDCETHARSLKMCCHK  381 (441)
Q Consensus       307 ~m~~~g~~~~~~~~~~li~~~~~~g~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g-----~~p~~~t~~~li~~~~~~  381 (441)
                      .|.+.+..++..+              ...|.++.-.+..++....+.+++.+.--.     -..+..+|.+++.+.++.
T Consensus        27 y~~~~~~~~~~k~--------------~fiN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnS   92 (145)
T PF13762_consen   27 YMQEENASQSTKT--------------IFINCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNS   92 (145)
T ss_pred             HhhhcccChhHHH--------------HHHHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccC
Confidence            3455566666654              457888888888888888888888774211     135566799999999776


Q ss_pred             CChhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCccH
Q 036107          382 KRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEKKSLGNA  424 (441)
Q Consensus       382 g~~~~a~~~~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~  424 (441)
                      .--..+-  +-++.-|++.+++++..-|..++.++.+....+.
T Consensus        93 sSaK~~~--~~Lf~~Lk~~~~~~t~~dy~~li~~~l~g~~~~~  133 (145)
T PF13762_consen   93 SSAKLTS--LTLFNFLKKNDIEFTPSDYSCLIKAALRGYFHDS  133 (145)
T ss_pred             hHHHHHH--HHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCCcc
Confidence            6634332  3356666667899999999999999988744443

>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1

Probab=84.51  E-value=13  Score=27.43  Aligned_cols=42  Identities=10%  Similarity=0.136  Sum_probs=22.6

Q ss_pred             HHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHH
Q 036107          355 LRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMRE  396 (441)
Q Consensus       355 ~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~~~~  396 (441)
                      -+..+....+.|+.....+.+++|.+.+++..|.++++.++.
T Consensus        32 glN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~   73 (108)
T PF02284_consen   32 GLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKD   73 (108)
T ss_dssp             HHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             HHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence            334444455666666666667777666666666665554444

9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=84.30  E-value=43  Score=32.64  Aligned_cols=66  Identities=6%  Similarity=-0.033  Sum_probs=51.1

Q ss_pred             hhHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCC
Q 036107          248 VSYTCFIEHYCREKDFRKVDYTLKEMQEKG-CKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDC  313 (441)
Q Consensus       248 ~~~~~li~~~~~~g~~~~a~~l~~~m~~~g-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~  313 (441)
                      .+=..+-.++.+.|+.++|.+.|++|.+.. ..-+......|+.++...+++.++..++.+-.+...
T Consensus       260 y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~l  326 (539)
T PF04184_consen  260 YAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISL  326 (539)
T ss_pred             hhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccC
Confidence            333456666778999999999999997653 222455778899999999999999999999765443

The molecular function of this protein is uncertain.

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=84.15  E-value=13  Score=36.80  Aligned_cols=131  Identities=8%  Similarity=-0.030  Sum_probs=79.3

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhc
Q 036107          181 MSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCRE  260 (441)
Q Consensus       181 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~  260 (441)
                      -+.+.+.+.+.|-.++|+++-        +|...   -.....+.|+++.|.++..+..      +..-|..|-++..+.
T Consensus       617 rt~va~Fle~~g~~e~AL~~s--------~D~d~---rFelal~lgrl~iA~~la~e~~------s~~Kw~~Lg~~al~~  679 (794)
T KOG0276|consen  617 RTKVAHFLESQGMKEQALELS--------TDPDQ---RFELALKLGRLDIAFDLAVEAN------SEVKWRQLGDAALSA  679 (794)
T ss_pred             hhhHHhHhhhccchHhhhhcC--------CChhh---hhhhhhhcCcHHHHHHHHHhhc------chHHHHHHHHHHhhc
Confidence            344555556666666666443        22111   1122345677777777665542      556677777777777


Q ss_pred             CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCccchHHHHH
Q 036107          261 KDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMI  340 (441)
Q Consensus       261 g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~~~li  340 (441)
                      |++..|.+.|...+.         |..|+-.+...|+-+....+-...++.|.                      .|...
T Consensus       680 ~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~~~~~g~----------------------~N~AF  728 (794)
T KOG0276|consen  680 GELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASLAKKQGK----------------------NNLAF  728 (794)
T ss_pred             ccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHHHHhhcc----------------------cchHH
Confidence            777777777765433         45555556666665555555555555442                      56666


Q ss_pred             HHHHhcCChhHHHHHHHHH
Q 036107          341 SSACVRSEEGNALKLRQKI  359 (441)
Q Consensus       341 ~~~~~~g~~~~a~~~~~~m  359 (441)
                      .+|...|+++++.+++.+-
T Consensus       729 ~~~~l~g~~~~C~~lLi~t  747 (794)
T KOG0276|consen  729 LAYFLSGDYEECLELLIST  747 (794)
T ss_pred             HHHHHcCCHHHHHHHHHhc
Confidence            7788889999998887653

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=84.06  E-value=30  Score=30.70  Aligned_cols=98  Identities=13%  Similarity=0.107  Sum_probs=66.0

Q ss_pred             HHHHHHHHHHcCCChhHHHHHHHHHHHhcCCCccHHHHHHHHhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCC--
Q 036107          132 TYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCIS--  209 (441)
Q Consensus       132 ~y~~li~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~--  209 (441)
                      .|+.-+..+ +.|++..|...|....+..|..+           .....+--|..++...|++++|..+|..+.++.+  
T Consensus       144 ~Y~~A~~~~-ksgdy~~A~~~F~~fi~~YP~s~-----------~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s  211 (262)
T COG1729         144 LYNAALDLY-KSGDYAEAEQAFQAFIKKYPNST-----------YTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKS  211 (262)
T ss_pred             HHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCc-----------ccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCC
Confidence            577777554 45668888888888877443322           2556667778888888888888888877733222  


Q ss_pred             -CcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 036107          210 -LSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQH  241 (441)
Q Consensus       210 -~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~  241 (441)
                       .-...+--|-.+..+.|+.++|..+|++..+.
T Consensus       212 ~KApdallKlg~~~~~l~~~d~A~atl~qv~k~  244 (262)
T COG1729         212 PKAPDALLKLGVSLGRLGNTDEACATLQQVIKR  244 (262)
T ss_pred             CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence             22234555556667778888888888887764

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=83.33  E-value=20  Score=35.56  Aligned_cols=149  Identities=13%  Similarity=0.116  Sum_probs=94.2

Q ss_pred             hhhhchhhHHHHHhhhcCchhhHHHHHHHHHhcCCChHHHHHHHhhhhhHhhhhcCCCCCCHHHHHHHHHHHHcCCChhH
Q 036107           69 SLKLNEQSRISSHALSEDHETDVDKVSEILRKRYPSPDKVVEALKCFCFTWAKTQTGYMHTPETYNAMVEALGKSKKFGL  148 (441)
Q Consensus        69 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~g~~p~~~~y~~li~~~~~~~~~~~  148 (441)
                      .++++.|..++..+.+        ...+.+.+...+.|.-++|+++-            +|+.-   -.....+.|+++.
T Consensus       599 rrd~~~a~~vLp~I~k--------~~rt~va~Fle~~g~~e~AL~~s------------~D~d~---rFelal~lgrl~i  655 (794)
T KOG0276|consen  599 RRDLEVADGVLPTIPK--------EIRTKVAHFLESQGMKEQALELS------------TDPDQ---RFELALKLGRLDI  655 (794)
T ss_pred             hccccccccccccCch--------hhhhhHHhHhhhccchHhhhhcC------------CChhh---hhhhhhhcCcHHH
Confidence            3555555555443332        12233445566677777777664            23321   1233456778888


Q ss_pred             HHHHHHHHHHhcCCCccHHHHHHHHhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcHHHHHHHHHHHHhcCCH
Q 036107          149 MWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKS  228 (441)
Q Consensus       149 a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~  228 (441)
                      |.++..+..                   +..-|..|-++..+.|++..|.+.|...++        |..|+-.+...|+-
T Consensus       656 A~~la~e~~-------------------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d--------~~~LlLl~t~~g~~  708 (794)
T KOG0276|consen  656 AFDLAVEAN-------------------SEVKWRQLGDAALSAGELPLASECFLRARD--------LGSLLLLYTSSGNA  708 (794)
T ss_pred             HHHHHHhhc-------------------chHHHHHHHHHHhhcccchhHHHHHHhhcc--------hhhhhhhhhhcCCh
Confidence            877755532                   556788888888888888888888877654        77778778888877


Q ss_pred             HHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 036107          229 DYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEM  273 (441)
Q Consensus       229 ~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m  273 (441)
                      +....+=....+.|.      .|.-.-+|...|+++++.+++.+-
T Consensus       709 ~~l~~la~~~~~~g~------~N~AF~~~~l~g~~~~C~~lLi~t  747 (794)
T KOG0276|consen  709 EGLAVLASLAKKQGK------NNLAFLAYFLSGDYEECLELLIST  747 (794)
T ss_pred             hHHHHHHHHHHhhcc------cchHHHHHHHcCCHHHHHHHHHhc
Confidence            766666666655543      233444566678888888777654

>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]

Probab=83.23  E-value=7.9  Score=33.09  Aligned_cols=79  Identities=15%  Similarity=0.098  Sum_probs=54.1

Q ss_pred             HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 036107          336 YNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEE  415 (441)
Q Consensus       336 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~~~~m~~~~~~p~~~~~~~ll~~  415 (441)
                      .+..|+.+.+.+.+.+|+...++-++.. ..|..+-..+++.+|-.|++++|..-+++..+| +....+-..+|..+|++
T Consensus         4 l~~t~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l-~p~~t~~a~lyr~lir~   81 (273)
T COG4455           4 LRDTISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNLAATL-SPQDTVGASLYRHLIRC   81 (273)
T ss_pred             hHHHHHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHHHhhc-CcccchHHHHHHHHHHH
Confidence            5566778888888888888887765442 233445566788889999999987766665554 23455566677777665


Q ss_pred             H
Q 036107          416 L  416 (441)
Q Consensus       416 ~  416 (441)
                      -
T Consensus        82 e   82 (273)
T COG4455          82 E   82 (273)
T ss_pred             H
Confidence            3

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=82.56  E-value=28  Score=29.17  Aligned_cols=125  Identities=10%  Similarity=0.063  Sum_probs=79.1

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHhhhC-CCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC-CCHhhHHHHHHH
Q 036107          179 RAMSVLMDTLVKRNSVAHAYKVFLKFKDC-ISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFS-PDGVSYTCFIEH  256 (441)
Q Consensus       179 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~-p~~~~~~~li~~  256 (441)
                      ..--.|-.++.+.|+..+|...|++.-.| +.-|....-.+-++....+++..|...++++.+.... .++.+.-.+-..
T Consensus        90 qnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~aR~  169 (251)
T COG4700          90 QNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLFART  169 (251)
T ss_pred             HHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHHHHH
Confidence            33345666777888888888888776444 4456666667777777778888888888887764210 122234455567


Q ss_pred             HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 036107          257 YCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVY  305 (441)
Q Consensus       257 ~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~  305 (441)
                      +...|.+.+|+.-|+.....--.|....|-..  .+.+.|+.+++..-+
T Consensus       170 laa~g~~a~Aesafe~a~~~ypg~~ar~~Y~e--~La~qgr~~ea~aq~  216 (251)
T COG4700         170 LAAQGKYADAESAFEVAISYYPGPQARIYYAE--MLAKQGRLREANAQY  216 (251)
T ss_pred             HHhcCCchhHHHHHHHHHHhCCCHHHHHHHHH--HHHHhcchhHHHHHH
Confidence            77788888888888887776443444443332  245666666555433

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=82.46  E-value=21  Score=27.84  Aligned_cols=90  Identities=8%  Similarity=0.020  Sum_probs=60.1

Q ss_pred             HHHhcCCHHHHHHHHHHhhhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC-CCCCCHh---hHHHHHHHHHhcCC
Q 036107          187 TLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQH-GFSPDGV---SYTCFIEHYCREKD  262 (441)
Q Consensus       187 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-g~~p~~~---~~~~li~~~~~~g~  262 (441)
                      +++..|+++.|++.|.+.-.-.+.....||.--.++--.|+.++|+.=+++..+. |-+ +..   .|-.--..|...|+
T Consensus        52 alaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~-trtacqa~vQRg~lyRl~g~  130 (175)
T KOG4555|consen   52 ALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQ-TRTACQAFVQRGLLYRLLGN  130 (175)
T ss_pred             HHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHHHhCc
Confidence            5667788888888887765445556677888888888888888888877777653 222 221   22223334556777


Q ss_pred             HHHHHHHHHHHHHcC
Q 036107          263 FRKVDYTLKEMQEKG  277 (441)
Q Consensus       263 ~~~a~~l~~~m~~~g  277 (441)
                      -+.|..=|+..-+.|
T Consensus       131 dd~AR~DFe~AA~LG  145 (175)
T KOG4555|consen  131 DDAARADFEAAAQLG  145 (175)
T ss_pred             hHHHHHhHHHHHHhC
Confidence            777777777766655

>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=82.16  E-value=27  Score=28.82  Aligned_cols=139  Identities=12%  Similarity=0.077  Sum_probs=82.0

Q ss_pred             CHHHHHHHHHHHHcCCChhHHHHHHHHHHHhcCCCccHHHHHHHHhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhh-C
Q 036107          129 TPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKD-C  207 (441)
Q Consensus       129 ~~~~y~~li~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~-~  207 (441)
                      +...|...+. +++.+..++|+.-|.++.+.|.+..            .+-.--..-......|+...|...|+++-. .
T Consensus        58 sgd~flaAL~-lA~~~k~d~Alaaf~~lektg~g~Y------------pvLA~mr~at~~a~kgdta~AV~aFdeia~dt  124 (221)
T COG4649          58 SGDAFLAALK-LAQENKTDDALAAFTDLEKTGYGSY------------PVLARMRAATLLAQKGDTAAAVAAFDEIAADT  124 (221)
T ss_pred             chHHHHHHHH-HHHcCCchHHHHHHHHHHhcCCCcc------------hHHHHHHHHHHHhhcccHHHHHHHHHHHhccC
Confidence            3455665554 4667788999999999888652211            111111222345678888899988988833 2


Q ss_pred             CCCcHH-HHHHHHHH--HHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 036107          208 ISLSSQ-IFDVLIHG--WCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKP  280 (441)
Q Consensus       208 ~~~~~~-~~~~li~~--~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p  280 (441)
                      -.|-.. -...|=.+  +...|.++.+..-.+-+...|-+.-...-.+|--+-.+.|++.+|.+.|.++......|
T Consensus       125 ~~P~~~rd~ARlraa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~Da~ap  200 (221)
T COG4649         125 SIPQIGRDLARLRAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIANDAQAP  200 (221)
T ss_pred             CCcchhhHHHHHHHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHccccCc
Confidence            223221 22222222  34567777777777766655444344444566666677788888888887776543333

>KOG2610 consensus Uncharacterized conserved protein [Function unknown]

Probab=82.06  E-value=42  Score=30.90  Aligned_cols=155  Identities=12%  Similarity=-0.008  Sum_probs=109.7

Q ss_pred             hcCCHHHHHHHHHHhhhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhH----HHHHHHHHhcCCHHH
Q 036107          190 KRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSY----TCFIEHYCREKDFRK  265 (441)
Q Consensus       190 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~----~~li~~~~~~g~~~~  265 (441)
                      -.|++.+|-..++++-+..+.|...++..=.+|.-.|+.+.....+++..-. ..||...|    ...--++...|-+++
T Consensus       115 ~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y~d  193 (491)
T KOG2610|consen  115 GRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIYDD  193 (491)
T ss_pred             ccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccchh
Confidence            4688888888899988888889999999999999999999999988888753 23444333    334445567899999


Q ss_pred             HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCccchHHHHHHHHHh
Q 036107          266 VDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACV  345 (441)
Q Consensus       266 a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~~~li~~~~~  345 (441)
                      |++.-++-.+.+- .|.-.-.++.+.+--.|+..++.++..+-.+.=-      ...|+.+       .-|-...-.+..
T Consensus       194 AEk~A~ralqiN~-~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr------~s~mlas-------HNyWH~Al~~iE  259 (491)
T KOG2610|consen  194 AEKQADRALQINR-FDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWR------QSWMLAS-------HNYWHTALFHIE  259 (491)
T ss_pred             HHHHHHhhccCCC-cchHHHHHHHHHHHhcchhhhHHHHHHhcccchh------hhhHHHh-------hhhHHHHHhhhc
Confidence            9999888776543 3666667778888889999999887765443211      1111110       114444455666


Q ss_pred             cCChhHHHHHHHHH
Q 036107          346 RSEEGNALKLRQKI  359 (441)
Q Consensus       346 ~g~~~~a~~~~~~m  359 (441)
                      .+.++.|+++|+.=
T Consensus       260 ~aeye~aleIyD~e  273 (491)
T KOG2610|consen  260 GAEYEKALEIYDRE  273 (491)
T ss_pred             ccchhHHHHHHHHH
Confidence            78999999999763

>PRK10564 maltose regulon periplasmic protein; Provisional

Probab=81.89  E-value=3.7  Score=36.92  Aligned_cols=51  Identities=29%  Similarity=0.367  Sum_probs=43.0

Q ss_pred             CCCCCCHHHHHHHHHHHHhcCccchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 036107          311 DDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLK  376 (441)
Q Consensus       311 ~g~~~~~~~~~~li~~~~~~g~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~  376 (441)
                      ..+.||+.+|               ||..|....+.||+++|++++++.++.|+.--..||-.-++
T Consensus       250 ~~v~~dTe~Y---------------y~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFik~V~  300 (303)
T PRK10564        250 EPMLNDTESY---------------FNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFISSVK  300 (303)
T ss_pred             CccCchHHHH---------------HHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHHHHhh
Confidence            3456788877               99999999999999999999999999998877777755443

>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]

Probab=81.87  E-value=26  Score=33.12  Aligned_cols=245  Identities=10%  Similarity=-0.031  Sum_probs=136.0

Q ss_pred             HHHHhcCCHHHHHHHHHHhhh----CCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHH--hhC--CCC-CCHhhHHHHHHH
Q 036107          186 DTLVKRNSVAHAYKVFLKFKD----CISLSSQIFDVLIHGWCKTRKSDYAQKAMKEM--FQH--GFS-PDGVSYTCFIEH  256 (441)
Q Consensus       186 ~~~~~~g~~~~a~~~~~~~~~----~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m--~~~--g~~-p~~~~~~~li~~  256 (441)
                      .-+|+.|+.+....+|+..-+    .++.-+.+|+.|-++|.-.+++++|+++-..=  ..+  |-+ -...+...|-+.
T Consensus        25 ERLck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNt  104 (639)
T KOG1130|consen   25 ERLCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNT  104 (639)
T ss_pred             HHHHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccch
Confidence            357888999999999987633    33444556777777777788888888764321  111  100 112233344444


Q ss_pred             HHhcCCHHHHHHHHHH----HHHcCCCC-CHHHHHHHHHHHHhcCCH--------------------HHHHHHHHHH---
Q 036107          257 YCREKDFRKVDYTLKE----MQEKGCKP-SVITCTIVMHALEKAKQI--------------------YEALKVYEKM---  308 (441)
Q Consensus       257 ~~~~g~~~~a~~l~~~----m~~~g~~p-~~~~~~~ll~~~~~~~~~--------------------~~a~~~~~~m---  308 (441)
                      +--.|.+++|.-.-.+    .++.|-+. ....+..+-..|...|+-                    +.|.++|.+=   
T Consensus       105 lKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l  184 (639)
T KOG1130|consen  105 LKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLEL  184 (639)
T ss_pred             hhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHH
Confidence            5556777777654332    23333222 234555666666655541                    2233333321   


Q ss_pred             -hhCCCCCCHHHHHHHHHHHHhcCcc-------------------------------chHHHHHHHHHhcCChhHHHHHH
Q 036107          309 -KSDDCLTDTSFYSSLIFILSKAVRF-------------------------------LIYNTMISSACVRSEEGNALKLR  356 (441)
Q Consensus       309 -~~~g~~~~~~~~~~li~~~~~~g~~-------------------------------~~~~~li~~~~~~g~~~~a~~~~  356 (441)
                       .+.|   |.   .+.-.+|+..|+.                               ..+..+-+++.-.|+++.|.+.|
T Consensus       185 ~~~lg---Dr---~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehY  258 (639)
T KOG1130|consen  185 SEKLG---DR---LAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHY  258 (639)
T ss_pred             HHHhh---hH---HhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHH
Confidence             1111   00   1111223333322                               56667777777888888888887


Q ss_pred             HHHH----HcCC-CCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHHH-H-CCCCCCHHHHHHHHHHHHhcCCccHHHHHH
Q 036107          357 QKIE----EDSC-KPDCETHARSLKMCCHKKRMKDGMLVLNLMREML-S-KGIVPQESTHKMLAEELEKKSLGNAKERID  429 (441)
Q Consensus       357 ~~m~----~~g~-~p~~~t~~~li~~~~~~g~~~~a~~~~~~~~~m~-~-~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~  429 (441)
                      +.-.    +.|- .....+.-+|-.+|.-..+++.|..++..--.+. + ....-..+.|-+|-.++...|.-++|..+.
T Consensus       259 K~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fa  338 (639)
T KOG1130|consen  259 KLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFA  338 (639)
T ss_pred             HHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHH
Confidence            7643    2221 2223344456666666667777766544111111 1 134456678889999999999999998887


Q ss_pred             HHHHHHh
Q 036107          430 ELLTHAT  436 (441)
Q Consensus       430 ~~m~~~~  436 (441)
                      +.-.+.+
T Consensus       339 e~hl~~s  345 (639)
T KOG1130|consen  339 ELHLRSS  345 (639)
T ss_pred             HHHHHHH
Confidence            7655443

>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed

Probab=81.63  E-value=19  Score=30.51  Aligned_cols=73  Identities=12%  Similarity=-0.043  Sum_probs=47.4

Q ss_pred             HHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHc---CCCCCHHHHHHHHHHHHhcCCHHHH
Q 036107          228 SDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEK---GCKPSVITCTIVMHALEKAKQIYEA  301 (441)
Q Consensus       228 ~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~---g~~p~~~~~~~ll~~~~~~~~~~~a  301 (441)
                      -+.|++.|-++...+.--++.....|-..|. ..+.+++..++-...+.   +-.+|+..+.+|...+.+.|+++.|
T Consensus       122 d~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A  197 (203)
T PF11207_consen  122 DQEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA  197 (203)
T ss_pred             cHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence            3567777777776665544444444444443 56777777777776543   3366777788888888887777766

>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed

Probab=80.77  E-value=18  Score=30.64  Aligned_cols=81  Identities=14%  Similarity=-0.026  Sum_probs=59.1

Q ss_pred             HhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcc
Q 036107          344 CVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEKKSLGN  423 (441)
Q Consensus       344 ~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~  423 (441)
                      .+.|+ +.|.+.|-.+...+.--+......|..-|. ..+.+++.+++--.-++...+-.+|+..+..|...+.+.|+++
T Consensus       118 sr~~d-~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e  195 (203)
T PF11207_consen  118 SRFGD-QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYE  195 (203)
T ss_pred             hccCc-HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchh
Confidence            34455 789999999988886666666666666555 5677778774433333334466899999999999999999999


Q ss_pred             HHH
Q 036107          424 AKE  426 (441)
Q Consensus       424 ~a~  426 (441)
                      .|-
T Consensus       196 ~AY  198 (203)
T PF11207_consen  196 QAY  198 (203)
T ss_pred             hhh
Confidence            874

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=80.64  E-value=43  Score=30.19  Aligned_cols=141  Identities=12%  Similarity=0.079  Sum_probs=92.3

Q ss_pred             HHHcCCChhHHHHHHHHHHHhcCCCccHHHHHHHHhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcHHH-HHH
Q 036107          139 ALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQI-FDV  217 (441)
Q Consensus       139 ~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~  217 (441)
                      .....|++.+|..+|.......+.              +...--.+..+|...|+.+.|..++..+.....-+... ...
T Consensus       143 ~~~~~e~~~~a~~~~~~al~~~~~--------------~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a  208 (304)
T COG3118         143 ELIEAEDFGEAAPLLKQALQAAPE--------------NSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQA  208 (304)
T ss_pred             hhhhccchhhHHHHHHHHHHhCcc--------------cchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHH
Confidence            466789999999999998875533              45677788899999999999999999996533333322 222


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHhhCCCCC-CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHh
Q 036107          218 LIHGWCKTRKSDYAQKAMKEMFQHGFSP-DGVSYTCFIEHYCREKDFRKVDYTLKEMQEK--GCKPSVITCTIVMHALEK  294 (441)
Q Consensus       218 li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~--g~~p~~~~~~~ll~~~~~  294 (441)
                      -|..+.+.....+...+-.+.-..   | |...=-.+-..+...|+.+.|.+.+-.+.+.  |.. |...=..+++.+.-
T Consensus       209 ~i~ll~qaa~~~~~~~l~~~~aad---Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~-d~~~Rk~lle~f~~  284 (304)
T COG3118         209 QIELLEQAAATPEIQDLQRRLAAD---PDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFE-DGEARKTLLELFEA  284 (304)
T ss_pred             HHHHHHHHhcCCCHHHHHHHHHhC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccc-CcHHHHHHHHHHHh
Confidence            344444444444444444444432   4 5555556677788899999998877666443  333 44455566666555


Q ss_pred             cCC
Q 036107          295 AKQ  297 (441)
Q Consensus       295 ~~~  297 (441)
                      .|.
T Consensus       285 ~g~  287 (304)
T COG3118         285 FGP  287 (304)
T ss_pred             cCC
Confidence            553

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	441
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-08
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-06
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	3e-07

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 54.1 bits (129), Expect = 6e-08
 Identities = 65/458 (14%), Positives = 141/458 (30%), Gaps = 119/458 (25%)

Query: 3   PKHDIWKLLSQSHLQKH-HKINP---------LGC-------LLCNRHCITNELTGLPSW 45
            K+++ +L     L++   ++ P         LG         +C  + +  ++     W
Sbjct: 127 AKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFW 186

Query: 46  LKFFDTQSPDEDFVIPSLASWVESLKLNEQSRISSHALSEDHETDV--DKVSEILR-KRY 102
           L   +  SP+   V+  L   +  +  N  SR S H+ +          ++  +L+ K Y
Sbjct: 187 LNLKNCNSPET--VLEMLQKLLYQIDPNWTSR-SDHSSNIKLRIHSIQAELRRLLKSKPY 243

Query: 103 PSP----DKV--VEALKCF---CFTWAKTQ--------TGYMHTPETYNAMVEALGKSKK 145
            +       V   +A   F   C     T+        +    T  + +     L   + 
Sbjct: 244 ENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEV 303

Query: 146 FGLM--W------ELVKEIDELSNGYVSL--AAMSTVMRRLD----------TRAMSVLM 185
             L+  +      +L +E+   +   +S+   ++   +   D          T  +   +
Sbjct: 304 KSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSL 363

Query: 186 DTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFS- 244
           + L +       +     F     + + +  ++   W    KSD     + ++  H +S 
Sbjct: 364 NVL-EPAEYRKMFDRLSVFPPSAHIPTILLSLI---WFDVIKSD-VMVVVNKL--HKYSL 416

Query: 245 --PDGVSYTCFIEH--YCREKDFRKVDYTL-----------KEMQEKGCKPSV----ITC 285
                   T  I    Y   K   + +Y L           K        P         
Sbjct: 417 VEKQPKESTISI-PSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYS 475

Query: 286 TIVMH--ALEKAKQIYEALKVY-------EKMKSD-----------DCLTDTSFYSSLIF 325
            I  H   +E  +++     V+       +K++ D           + L    FY   I 
Sbjct: 476 HIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYIC 535

Query: 326 --------ILSKAVRFLIYNTMISSACVRSEEGNALKL 355
                   +++  + FL     I    + S+  + L++
Sbjct: 536 DNDPKYERLVNAILDFLP---KIEENLICSKYTDLLRI 570

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 50.2 bits (119), Expect = 1e-06
 Identities = 68/509 (13%), Positives = 136/509 (26%), Gaps = 148/509 (29%)

Query: 15  HLQKHHKINPLGCL-LCNRHCITNELTGLPSWLKFFDTQSPDEDFVIPSLASWVESLK-- 71
           H   HH     G      +  +        +++  FD +   +D     L+   E +   
Sbjct: 1   HHHHHHMDFETGEHQYQYKDIL---SVFEDAFVDNFDCKDV-QDMPKSILSK--EEIDHI 54

Query: 72  LNEQSRISS-----HALSEDHETDVDK-VSEILRKRYPSPDKVVEALKCFCFTWAKTQTG 125
           +  +  +S        L    E  V K V E+LR  Y              F  +  +T 
Sbjct: 55  IMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYK-------------FLMSPIKTE 101

Query: 126 YMHTP---ETYNAMVEAL-GKSKKFG--------LMWELVKEIDEL-SNGYVSLAAMS-- 170
                     Y    + L   ++ F            +L + + EL     V +  +   
Sbjct: 102 QRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGS 161

Query: 171 --TVMRRLDTRAMSVLMDTLVKRNSVAHAYKVF-LKFKDCIS----------LSSQI--- 214
             T +      A+ V +   V+       +K+F L  K+C S          L  QI   
Sbjct: 162 GKTWV------ALDVCLSYKVQCK---MDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPN 212

Query: 215 FDVLIHGWCKTR-KSDYAQKAMKEMFQHGFSPDGVSYTCFI--EHYCREKDFRKVDYTLK 271
           +          + +    Q  ++ + +     +     C +   +    K +   +    
Sbjct: 213 WTSRSDHSSNIKLRIHSIQAELRRLLKSKPYEN-----CLLVLLNVQNAKAWNAFNL--- 264

Query: 272 EMQEKGCKPSVIT-----CTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFI 326
                 CK  + T        +  A      +          +                +
Sbjct: 265 -----SCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKS-------------L 306

Query: 327 LSKAVRFLIYNTMISSACVRSE--EGNALKLR---QKIEEDSCKPD------CETHARSL 375
           L K +             +  E    N  +L    + I +     D      C+     +
Sbjct: 307 LLKYLD-------CRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTII 359

Query: 376 KMCC-------HKKRMKDGMLVL-----NLMREMLS---KGIVPQESTHKMLAEELEKKS 420
           +          ++K      L +     ++   +LS     ++  +    ++  +L K S
Sbjct: 360 ESSLNVLEPAEYRKMFDR--LSVFPPSAHIPTILLSLIWFDVIKSDV--MVVVNKLHKYS 415

Query: 421 L--GNAKERI-------DELLTHATEQRT 440
           L     KE          EL      +  
Sbjct: 416 LVEKQPKESTISIPSIYLELKVKLENEYA 444

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134

 Score = 52.1 bits (123), Expect = 3e-07
 Identities = 29/246 (11%), Positives = 70/246 (28%), Gaps = 10/246 (4%)

Query: 182 SVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQK---AMKEM 238
            +L +   K +            +  +S   Q           T +   A          
Sbjct: 97  RLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQ 156

Query: 239 FQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQI 298
            Q         Y   +  + R+  F+++ Y L  +++ G  P +++    +  + +  Q 
Sbjct: 157 RQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQD 216

Query: 299 YEALKVY-EKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQ 357
              ++   E+M  +       F + L+    +A      + +  +  +  +    +   +
Sbjct: 217 AGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSK 276

Query: 358 KIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELE 417
            + +   K   +      K+    K ++           M     V   S  K      E
Sbjct: 277 LLRDVYAK---DGRVSYPKLHLPLKTLQCLF---EKQLHMELASRVCVVSVEKPTLPSKE 330

Query: 418 KKSLGN 423
            K    
Sbjct: 331 VKHARK 336

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	441
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	100.0
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	100.0
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	100.0
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	99.96
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	99.89
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	99.86
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	99.84
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.83
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	99.83
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.79
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	99.75
2gw1_A	514	Mitochondrial precursor proteins import receptor;	99.75
2gw1_A	514	Mitochondrial precursor proteins import receptor;	99.73
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	99.71
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.71
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	99.69
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.67
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	99.66
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	99.65
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	99.65
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	99.64
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.62
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	99.61
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	99.61
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.59
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	99.58
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	99.58
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	99.57
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.53
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.52
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.46
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.46
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.46
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.45
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	99.44
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.43
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.43
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.43
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.4
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	99.39
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.39
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	99.39
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	99.39
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	99.38
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.37
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	99.36
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.34
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	99.34
4g1t_A	472	Interferon-induced protein with tetratricopeptide	99.31
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	99.31
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.3
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	99.3
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	99.3
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.27
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	99.27
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	99.26
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.26
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	99.23
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	99.23
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.21
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	99.2
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	99.19
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	99.18
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.16
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.14
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	99.13
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.12
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.11
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	99.09
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	99.08
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	99.04
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.03
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	99.03
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.01
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	98.99
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	98.98
4g1t_A	472	Interferon-induced protein with tetratricopeptide	98.98
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	98.97
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	98.93
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	98.92
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	98.89
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	98.88
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	98.82
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	98.81
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	98.72
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	98.71
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	98.71
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	98.66
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	98.63
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	98.62
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	98.59
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	98.58
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	98.56
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	98.55
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	98.52
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	98.5
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	98.49
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	98.49
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	98.49
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	98.47
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	98.46
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	98.45
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	98.44
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	98.43
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	98.41
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	98.41
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	98.41
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	98.4
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	98.4
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	98.4
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	98.39
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	98.36
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	98.36
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	98.34
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	98.34
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	98.34
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	98.33
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	98.33
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	98.32
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	98.32
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	98.31
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	98.31
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	98.29
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	98.23
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	98.21
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	98.21
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	98.15
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	98.14
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	98.13
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	98.12
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	98.11
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	98.11
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	98.09
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	98.08
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	98.07
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	98.06
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	98.01
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	98.0
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	98.0
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	97.98
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	97.95
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	97.95
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	97.92
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	97.92
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	97.92
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	97.91
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	97.91
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	97.91
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	97.91
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	97.91
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	97.91
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	97.87
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	97.87
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	97.86
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	97.85
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	97.84
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	97.84
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	97.83
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	97.81
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	97.81
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	97.79
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	97.78
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	97.77
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	97.77
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	97.74
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	97.73
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	97.71
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	97.7
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	97.68
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	97.63
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	97.62
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	97.59
3k9i_A	117	BH0479 protein; putative protein binding protein,	97.54
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	97.53
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	97.49
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	97.46
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	97.45
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	97.43
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	97.4
3k9i_A	117	BH0479 protein; putative protein binding protein,	97.4
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	97.39
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	97.37
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	97.36
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	97.34
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	97.32
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	97.31
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	97.17
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	97.16
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	97.05
2l6j_A	111	TPR repeat-containing protein associated with HSP;	97.03
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	96.99
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	96.99
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	96.87
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	96.8
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	96.79
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	96.79
2kat_A	115	Uncharacterized protein; NESG, structure, structur	96.73
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	96.71
1klx_A	138	Cysteine rich protein B; structural genomics, heli	96.71
2l6j_A	111	TPR repeat-containing protein associated with HSP;	96.69
1klx_A	138	Cysteine rich protein B; structural genomics, heli	96.64
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	96.63
2kat_A	115	Uncharacterized protein; NESG, structure, structur	96.61
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	96.56
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	96.5
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	96.46
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	96.36
1wy6_A	172	Hypothetical protein ST1625; helical repeat protei	96.26
1wy6_A	172	Hypothetical protein ST1625; helical repeat protei	96.12
3mkq_B	177	Coatomer subunit alpha; beta-propeller, alpha-sole	96.06
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	96.02
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	95.92
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	95.87
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	95.8
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	95.71
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	95.67
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	95.16
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	95.11
3mkq_B	177	Coatomer subunit alpha; beta-propeller, alpha-sole	94.85
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	94.48
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	94.41
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	94.41
1pc2_A	152	Mitochondria fission protein; unknown function; NM	93.53
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	93.09
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	92.41
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	92.15
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	92.13
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	91.7
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	91.28
4h7y_A	161	Dual specificity protein kinase TTK; mitotic check	91.04
1pc2_A	152	Mitochondria fission protein; unknown function; NM	90.85
4fhn_B	1139	Nucleoporin NUP120; protein complex,structural pro	90.79
4h7y_A	161	Dual specificity protein kinase TTK; mitotic check	89.34
4fhn_B	1139	Nucleoporin NUP120; protein complex,structural pro	87.23
1v54_E	109	Cytochrome C oxidase polypeptide VA; oxidoreductas	87.12
1v54_E	109	Cytochrome C oxidase polypeptide VA; oxidoreductas	87.09
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	85.61
4b4t_P	445	26S proteasome regulatory subunit RPN5; hydrolase,	85.47
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	85.47
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	84.86
2y69_E	152	Cytochrome C oxidase subunit 5A; electron transpor	84.77
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	84.73
3eiq_C	358	Programmed cell death protein 4; PDCD4, anti-oncog	84.51
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	81.94
2y69_E	152	Cytochrome C oxidase subunit 5A; electron transpor	81.01
4b4t_P	445	26S proteasome regulatory subunit RPN5; hydrolase,	80.85
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	80.37
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	80.21

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=100.00  E-value=1.5e-33  Score=274.40  Aligned_cols=196  Identities=14%  Similarity=0.141  Sum_probs=175.5

Q ss_pred             hcCCCCCCHH-HHHHHHHHHHcCCChhHHHHHHHHHHHhcCCCccHHHHHHHHhhcCHHHHHHHHHHHHhcCC-------
Q 036107          122 TQTGYMHTPE-TYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNS-------  193 (441)
Q Consensus       122 ~~~g~~p~~~-~y~~li~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~-------  193 (441)
                      .+.+..+.+. .++.+|.+|++.|++++|+++|++|.+.| .            .||..+|++||.+|++.+.       
T Consensus        17 ~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~G-v------------~pd~~tyn~Li~~c~~~~~~~~~~~~   83 (501)
T 4g26_A           17 KKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNG-V------------QLSQYHYNVLLYVCSLAEAATESSPN   83 (501)
T ss_dssp             -------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHT-C------------CCCHHHHHHHHHHHTTCCCCSSSSCC
T ss_pred             HHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC-C------------CCCHhHHHHHHHHHHhCCchhhhhhc
Confidence            3445555543 57888999999999999999999998877 3            3488999999999887654       


Q ss_pred             --HHHHHHHHHHh-hhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHH
Q 036107          194 --VAHAYKVFLKF-KDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTL  270 (441)
Q Consensus       194 --~~~a~~~~~~~-~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~l~  270 (441)
                        +++|.++|++| ..++.||..|||+||.+|++.|++++|.++|++|.+.|+.||..|||++|.+|++.|++++|.++|
T Consensus        84 ~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~  163 (501)
T 4g26_A           84 PGLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVD  163 (501)
T ss_dssp             HHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHH
Confidence              78999999999 559999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhc
Q 036107          271 KEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKA  330 (441)
Q Consensus       271 ~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~  330 (441)
                      ++|.+.|+.||..||++||.+|++.|++++|.++|++|.+.|+.|+..||+.++..|+..
T Consensus       164 ~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~  223 (501)
T 4g26_A          164 AHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE  223 (501)
T ss_dssp             HHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred             HHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence            999999999999999999999999999999999999999999999999999999988764

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=100.00  E-value=6.2e-34  Score=277.09  Aligned_cols=205  Identities=14%  Similarity=0.103  Sum_probs=169.4

Q ss_pred             HHHHHHHHhhh-CCCC-cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCC---------HH
Q 036107          196 HAYKVFLKFKD-CISL-SSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKD---------FR  264 (441)
Q Consensus       196 ~a~~~~~~~~~-~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~---------~~  264 (441)
                      .+..+...+++ +... ...+++.+|++|++.|++++|+++|++|.+.|+.||..|||+||.+|++.+.         ++
T Consensus         8 ~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~   87 (501)
T 4g26_A            8 PSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLS   87 (501)
T ss_dssp             ----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHH
T ss_pred             hHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHH
Confidence            34445555533 3333 2346888899999999999999999999999999999999999999987654         68


Q ss_pred             HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCccchHHHHHHHHH
Q 036107          265 KVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSAC  344 (441)
Q Consensus       265 ~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~~~li~~~~  344 (441)
                      +|.++|++|.+.|+.||..||++||.+|++.|++++|.++|++|.+.|+.||..|                ||++|.+|+
T Consensus        88 ~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~t----------------yn~lI~~~~  151 (501)
T 4g26_A           88 RGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRS----------------YGPALFGFC  151 (501)
T ss_dssp             HHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHH----------------HHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccce----------------ehHHHHHHH
Confidence            8999999999999999999999999999999999999999999999999999877                888888888


Q ss_pred             hcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 036107          345 VRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEKK  419 (441)
Q Consensus       345 ~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~~~~m~~~~~~p~~~~~~~ll~~~~~~  419 (441)
                      +.|++++|.++|++|.+.|+.||..||++||.+|++.|++++|.+   ++++|.+.|..|+..||+.++..|+..
T Consensus       152 ~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~---ll~~Mr~~g~~ps~~T~~~l~~~F~s~  223 (501)
T 4g26_A          152 RKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYK---TLQRLRDLVRQVSKSTFDMIEEWFKSE  223 (501)
T ss_dssp             HTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHH---HHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred             HCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHH---HHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence            888889999999999999999999999999999999999999855   788888889999999999999988753

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=100.00  E-value=2.4e-31  Score=267.31  Aligned_cols=404  Identities=8%  Similarity=-0.065  Sum_probs=319.8

Q ss_pred             ccCCCcchhhcccchhcccccCccchhccCCCCCCCCcccccchhhHHHhhhhchhhHHHHHhhhcCchhhHHHHHHHHH
Q 036107           20 HKINPLGCLLCNRHCITNELTGLPSWLKFFDTQSPDEDFVIPSLASWVESLKLNEQSRISSHALSEDHETDVDKVSEILR   99 (441)
Q Consensus        20 ~~~n~~i~~l~~~~~~~~~a~~l~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~   99 (441)
                      ..++..+..+.+.|++. +|.+++..+.   ...|+..++..+..++.+.|+++.|..++..+...  .++. .+...++
T Consensus        85 ~~~~~~~~~~~~~g~~~-~A~~~~~~~~---~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~-~~~~~l~  157 (597)
T 2xpi_A           85 DYLRLWRHDALMQQQYK-CAAFVGEKVL---DITGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLY--NRSS-ACRYLAA  157 (597)
T ss_dssp             HHHHHHHHHHHHTTCHH-HHHHHHHHHH---HHHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG--GTCH-HHHHHHH
T ss_pred             HHHHHHHHHHHHccCch-HHHHHHHHHH---hhCCCchHHHHHHHHHHHcCcHHHHHHHHHHHhcc--ccch-hHHHHHH
Confidence            34566777788888888 8888887444   23466678888999999999999999999987654  3444 6888899


Q ss_pred             hcCCChHHHHHHHhhhhhHhhhh------------cCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHhcCCCccHH
Q 036107          100 KRYPSPDKVVEALKCFCFTWAKT------------QTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLA  167 (441)
Q Consensus       100 ~~~~~~g~~~~A~~~~~~~~~~~------------~~g~~p~~~~y~~li~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~  167 (441)
                      .+|.+.|++++|+++|+......            ..+..++..+|+.++.+|.+.|++++|.++|++|.+.++..+...
T Consensus       158 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~  237 (597)
T 2xpi_A          158 FCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAF  237 (597)
T ss_dssp             HHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             HHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchhhHHH
Confidence            99999999999999996211110            123344688999999999999999999999999998764433221


Q ss_pred             HHHHH----------------------------------------------------Hh-----hcCHHHHHHHHHHHHh
Q 036107          168 AMSTV----------------------------------------------------MR-----RLDTRAMSVLMDTLVK  190 (441)
Q Consensus       168 ~~~~~----------------------------------------------------~~-----~~~~~~~~~li~~~~~  190 (441)
                      .....                                                    +.     ..+..++..++..|.+
T Consensus       238 ~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~  317 (597)
T 2xpi_A          238 DQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFV  317 (597)
T ss_dssp             HHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHHH
T ss_pred             HHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHHHH
Confidence            11100                                                    00     1477888888888888


Q ss_pred             cCCHHHHHHHHHHhhhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHH
Q 036107          191 RNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTL  270 (441)
Q Consensus       191 ~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~l~  270 (441)
                      .|++++|.++|+++....+.+..+++.++.+|.+.|++++|.++|+++.+.. +.+..+|+.+...|.+.|++++|.++|
T Consensus       318 ~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~  396 (597)
T 2xpi_A          318 RSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRYF  396 (597)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             hcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHHH
Confidence            8888888888888855445577778888888888888888888888887532 346788899999999999999999999


Q ss_pred             HHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCcc-----------------
Q 036107          271 KEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRF-----------------  333 (441)
Q Consensus       271 ~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~-----------------  333 (441)
                      +++.+... .+..+|+.++.+|.+.|++++|.++|+++.+.+ +.+..+++.+..+|.+.|+.                 
T Consensus       397 ~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~  474 (597)
T 2xpi_A          397 SKSSTMDP-QFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQYD  474 (597)
T ss_dssp             HHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCC
T ss_pred             HHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence            99877532 367889999999999999999999999988764 34677888899999998887                 


Q ss_pred             -chHHHHHHHHHhcCChhHHHHHHHHHHHc----CCCCC--HHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCCCCH
Q 036107          334 -LIYNTMISSACVRSEEGNALKLRQKIEED----SCKPD--CETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQE  406 (441)
Q Consensus       334 -~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~p~--~~t~~~li~~~~~~g~~~~a~~~~~~~~~m~~~~~~p~~  406 (441)
                       .+|+.++..|.+.|++++|+++|+++.+.    +..|+  ..+|..+..+|.+.|++++|.+   .++++.+.+ +.+.
T Consensus       475 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~---~~~~~~~~~-p~~~  550 (597)
T 2xpi_A          475 PLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAID---ALNQGLLLS-TNDA  550 (597)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHH---HHHHHHHHS-SCCH
T ss_pred             hHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHH---HHHHHHHhC-CCCh
Confidence             67889999999999999999999998765    77888  6789999999999999999977   455544433 3478


Q ss_pred             HHHHHHHHHHHhcCCccHHHHHHHHHHHHhh
Q 036107          407 STHKMLAEELEKKSLGNAKERIDELLTHATE  437 (441)
Q Consensus       407 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~  437 (441)
                      .+|..+..+|.+.|++++|.+.++.+.+...
T Consensus       551 ~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p  581 (597)
T 2xpi_A          551 NVHTAIALVYLHKKIPGLAITHLHESLAISP  581 (597)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCC
Confidence            8999999999999999999999998876654

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=99.96  E-value=1.8e-27  Score=239.14  Aligned_cols=371  Identities=9%  Similarity=-0.049  Sum_probs=276.9

Q ss_pred             CCCcccccchhhHHHhhhhchhhHHHHHhhhcCchhhHHHHHHHHHhcCCChHHHHHHHhhhhhHhhhhcCCCCCCHHHH
Q 036107           54 PDEDFVIPSLASWVESLKLNEQSRISSHALSEDHETDVDKVSEILRKRYPSPDKVVEALKCFCFTWAKTQTGYMHTPETY  133 (441)
Q Consensus        54 p~~~~~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~g~~p~~~~y  133 (441)
                      ++...+..++..+.+.|+++.|..++..+.+  ..|+. ..+..+...|.+.|++++|+++|+.+.     ...++..+|
T Consensus        82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~--~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~~~~~~~~  153 (597)
T 2xpi_A           82 SREDYLRLWRHDALMQQQYKCAAFVGEKVLD--ITGNP-NDAFWLAQVYCCTGDYARAKCLLTKED-----LYNRSSACR  153 (597)
T ss_dssp             CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHCCH-HHHHHHHHHHHHTTCHHHHHHHHHHTC-----GGGTCHHHH
T ss_pred             HHHHHHHHHHHHHHHccCchHHHHHHHHHHh--hCCCc-hHHHHHHHHHHHcCcHHHHHHHHHHHh-----ccccchhHH
Confidence            4666788999999999999999999999985  44554 456678899999999999999996332     235789999


Q ss_pred             HHHHHHHHcCCChhHHHHHHHHHHHhcCCCccHHHHHH--HHhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCC---
Q 036107          134 NAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMST--VMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCI---  208 (441)
Q Consensus       134 ~~li~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~--~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~---  208 (441)
                      +.++.+|.+.|++++|.++|+++...............  .-...+..+|+.++.+|.+.|++++|.++|+++....   
T Consensus       154 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~  233 (597)
T 2xpi_A          154 YLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKC  233 (597)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchh
Confidence            99999999999999999999953221100000000000  0001157888999999999999999999888772211   


Q ss_pred             --------------------------------------------------------------------CCcHHHHHHHHH
Q 036107          209 --------------------------------------------------------------------SLSSQIFDVLIH  220 (441)
Q Consensus       209 --------------------------------------------------------------------~~~~~~~~~li~  220 (441)
                                                                                          +++..+|+.++.
T Consensus       234 ~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~  313 (597)
T 2xpi_A          234 YEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKAD  313 (597)
T ss_dssp             HHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHH
T ss_pred             hHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHH
Confidence                                                                                256666777777


Q ss_pred             HHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH
Q 036107          221 GWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYE  300 (441)
Q Consensus       221 ~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~  300 (441)
                      +|.+.|++++|.++|+++.+.+ +.+..+|+.++.++.+.|++++|..+++++.+.. +.+..+|+.+..+|.+.|++++
T Consensus       314 ~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~  391 (597)
T 2xpi_A          314 TLFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISE  391 (597)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHH
Confidence            7777777777777777777543 2356677777777777777777777777776543 3467888888888999999999


Q ss_pred             HHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCcc------------------chHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 036107          301 ALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRF------------------LIYNTMISSACVRSEEGNALKLRQKIEED  362 (441)
Q Consensus       301 a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~------------------~~~~~li~~~~~~g~~~~a~~~~~~m~~~  362 (441)
                      |.++|+++.+.. +.+..+|+.++.+|.+.|+.                  .+|+.++..|.+.|++++|+++|++|.+.
T Consensus       392 A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  470 (597)
T 2xpi_A          392 ARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYAL  470 (597)
T ss_dssp             HHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            999998887743 33577888888888888887                  67888888999999999999999988765


Q ss_pred             CCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHH-CCCCCC--HHHHHHHHHHHHhcCCccHHHHHHHHHHHHh
Q 036107          363 SCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLS-KGIVPQ--ESTHKMLAEELEKKSLGNAKERIDELLTHAT  436 (441)
Q Consensus       363 g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~~~~m~~-~~~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~  436 (441)
                      . ..+..+|..+...|.+.|++++|.++++...+... .+..|+  ..+|..+..+|.+.|++++|.++++.+.+..
T Consensus       471 ~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  546 (597)
T 2xpi_A          471 F-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS  546 (597)
T ss_dssp             C-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred             C-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence            3 34678888999999999999998774443332221 277787  7789999999999999999999998876653

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=99.89  E-value=5.3e-20  Score=174.55  Aligned_cols=359  Identities=10%  Similarity=-0.005  Sum_probs=275.2

Q ss_pred             hcccchhcccccCccchhccCCCCCCCCcccccc-hhhHHHhhhhchhhHHHHHhhhcCchhhHHHHHHHHHhcCCChHH
Q 036107           29 LCNRHCITNELTGLPSWLKFFDTQSPDEDFVIPS-LASWVESLKLNEQSRISSHALSEDHETDVDKVSEILRKRYPSPDK  107 (441)
Q Consensus        29 l~~~~~~~~~a~~l~~~~~~~~~~~p~~~~~~~~-l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~g~  107 (441)
                      +-+.|++. +|.+.+......   .|+....... -..+...++++.+...+....+..  |+...++..+...|.+.|+
T Consensus         9 ~~~~g~~~-~A~~~~~~~~~~---~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~--p~~~~~~~~lg~~~~~~g~   82 (388)
T 1w3b_A            9 EYQAGDFE-AAERHCMQLWRQ---EPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN--PLLAEAYSNLGNVYKERGQ   82 (388)
T ss_dssp             HHHHTCHH-HHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTC
T ss_pred             HHHCCCHH-HHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHHCCC
Confidence            45677777 777766632222   3444333333 344456677888888887776654  2223577778888888999


Q ss_pred             HHHHHhhhhhHhhhhcCCCCC-CHHHHHHHHHHHHcCCChhHHHHHHHHHHHhcCCCccHHHHHHHHhhcCHHHHHHHHH
Q 036107          108 VVEALKCFCFTWAKTQTGYMH-TPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMD  186 (441)
Q Consensus       108 ~~~A~~~~~~~~~~~~~g~~p-~~~~y~~li~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~li~  186 (441)
                      +++|++.|+.....     .| +..+|..+..++.+.|++++|.+.|+++.+..+.              +...+..+-.
T Consensus        83 ~~~A~~~~~~al~~-----~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~--------------~~~~~~~l~~  143 (388)
T 1w3b_A           83 LQEAIEHYRHALRL-----KPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPD--------------LYCVRSDLGN  143 (388)
T ss_dssp             HHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTT--------------CTHHHHHHHH
T ss_pred             HHHHHHHHHHHHHc-----CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--------------cHHHHHHHHH
Confidence            99999988644332     24 4567889999999999999999999988876532              4567777888


Q ss_pred             HHHhcCCHHHHHHHHHHhhhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHH
Q 036107          187 TLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKV  266 (441)
Q Consensus       187 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a  266 (441)
                      .+...|++++|.+.|+++....+.+..+|..+...+.+.|++++|...|+++.+.+ +.+...|..+...+...|++++|
T Consensus       144 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A  222 (388)
T 1w3b_A          144 LLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRA  222 (388)
T ss_dssp             HHHTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHH
T ss_pred             HHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHH
Confidence            88888999999999988855445567888899999999999999999999988743 22456788888889999999999


Q ss_pred             HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCccchHHHHHHHHHhc
Q 036107          267 DYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVR  346 (441)
Q Consensus       267 ~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~~~li~~~~~~  346 (441)
                      ...|++..+... -+..++..+..++.+.|++++|.+.|+++.+.+  |+..               .+|..+...+.+.
T Consensus       223 ~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~---------------~~~~~l~~~~~~~  284 (388)
T 1w3b_A          223 VAAYLRALSLSP-NHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ--PHFP---------------DAYCNLANALKEK  284 (388)
T ss_dssp             HHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC--SSCH---------------HHHHHHHHHHHHH
T ss_pred             HHHHHHHHhhCc-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCCH---------------HHHHHHHHHHHHc
Confidence            999988877532 257888889999999999999999999988753  3211               2388888899999


Q ss_pred             CChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCccHHH
Q 036107          347 SEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEKKSLGNAKE  426 (441)
Q Consensus       347 g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~  426 (441)
                      |++++|++.|+++.+.. ..+..++..+...+.+.|++++|.+   .++++.+. .+.+..++..+...+.+.|++++|.
T Consensus       285 g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~---~~~~al~~-~p~~~~~~~~l~~~~~~~g~~~~A~  359 (388)
T 1w3b_A          285 GSVAEAEDCYNTALRLC-PTHADSLNNLANIKREQGNIEEAVR---LYRKALEV-FPEFAAAHSNLASVLQQQGKLQEAL  359 (388)
T ss_dssp             SCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHH---HHHHHTTS-CTTCHHHHHHHHHHHHTTTCCHHHH
T ss_pred             CCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHcCCHHHHHH---HHHHHHhc-CCCcHHHHHHHHHHHHHcCCHHHHH
Confidence            99999999999998763 5577899999999999999999976   56665432 2345779999999999999999999


Q ss_pred             HHHHHHHHHh
Q 036107          427 RIDELLTHAT  436 (441)
Q Consensus       427 ~~~~~m~~~~  436 (441)
                      +.++.+.+..
T Consensus       360 ~~~~~a~~~~  369 (388)
T 1w3b_A          360 MHYKEAIRIS  369 (388)
T ss_dssp             HHHHHHHTTC
T ss_pred             HHHHHHHhhC
Confidence            9999887543

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=99.86  E-value=1.3e-18  Score=165.05  Aligned_cols=342  Identities=13%  Similarity=-0.003  Sum_probs=272.3

Q ss_pred             hcccchhcccccCccchhccCCCCCCCCcccccchhhHHHhhhhchhhHHHHHhhhcCchhhHHHHHHHHHhcCCChHHH
Q 036107           29 LCNRHCITNELTGLPSWLKFFDTQSPDEDFVIPSLASWVESLKLNEQSRISSHALSEDHETDVDKVSEILRKRYPSPDKV  108 (441)
Q Consensus        29 l~~~~~~~~~a~~l~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~  108 (441)
                      +.+.|++. +|...+.......  ..+...+..+-..+.+.|+++.|...+..+.+..  |+....+..+...+.+.|++
T Consensus        43 ~~~~~~~~-~a~~~~~~a~~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~  117 (388)
T 1w3b_A           43 HFQCRRLD-RSAHFSTLAIKQN--PLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLK--PDFIDGYINLAAALVAAGDM  117 (388)
T ss_dssp             HHHTTCHH-HHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHSCS
T ss_pred             HHHcCCHH-HHHHHHHHHHhcC--CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC--cchHHHHHHHHHHHHHcCCH
Confidence            45667776 7766665222221  1245678888888899999999999999988754  33335677788889999999


Q ss_pred             HHHHhhhhhHhhhhcCCCCCC-HHHHHHHHHHHHcCCChhHHHHHHHHHHHhcCCCccHHHHHHHHhhcCHHHHHHHHHH
Q 036107          109 VEALKCFCFTWAKTQTGYMHT-PETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDT  187 (441)
Q Consensus       109 ~~A~~~~~~~~~~~~~g~~p~-~~~y~~li~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~  187 (441)
                      ++|++.|+.....     .|+ ...+..+-..+...|++++|.+.|+++.+..+.              +..+|..+...
T Consensus       118 ~~A~~~~~~al~~-----~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~--------------~~~~~~~l~~~  178 (388)
T 1w3b_A          118 EGAVQAYVSALQY-----NPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPN--------------FAVAWSNLGCV  178 (388)
T ss_dssp             SHHHHHHHHHHHH-----CTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTT--------------CHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHh-----CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC--------------CHHHHHHHHHH
Confidence            9999999644432     344 557788888899999999999999999886522              67899999999


Q ss_pred             HHhcCCHHHHHHHHHHhhhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC-CHhhHHHHHHHHHhcCCHHHH
Q 036107          188 LVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSP-DGVSYTCFIEHYCREKDFRKV  266 (441)
Q Consensus       188 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~a  266 (441)
                      +.+.|++++|.+.|+++....+.+...|..+...+...|++++|...|++....  .| +..++..+...+.+.|++++|
T Consensus       179 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A  256 (388)
T 1w3b_A          179 FNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSL--SPNHAVVHGNLACVYYEQGLIDLA  256 (388)
T ss_dssp             HHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CcCCHHHHHHHHHHHHHcCCHHHH
Confidence            999999999999999985544567788999999999999999999999998874  34 578899999999999999999


Q ss_pred             HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCccchHHHHHHHHHhc
Q 036107          267 DYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVR  346 (441)
Q Consensus       267 ~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~~~li~~~~~~  346 (441)
                      .+.|+++.+.+. .+..+|..+..++.+.|++++|.+.|+++.+.. +.+..+                |+.+...+...
T Consensus       257 ~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~----------------~~~l~~~~~~~  318 (388)
T 1w3b_A          257 IDTYRRAIELQP-HFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADS----------------LNNLANIKREQ  318 (388)
T ss_dssp             HHHHHHHHHTCS-SCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHH----------------HHHHHHHHHTT
T ss_pred             HHHHHHHHhhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHH----------------HHHHHHHHHHc
Confidence            999999988642 357889999999999999999999999998753 334433                88888899999


Q ss_pred             CChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcC
Q 036107          347 SEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQ-ESTHKMLAEELEKKS  420 (441)
Q Consensus       347 g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~g  420 (441)
                      |++++|++.++++.+.. ..+..++..+...+.+.|++++|.+   .++++.+  +.|+ ...|..+-..+.+.|
T Consensus       319 g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~---~~~~a~~--~~p~~~~a~~~lg~~~~~~~  387 (388)
T 1w3b_A          319 GNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALM---HYKEAIR--ISPTFADAYSNMGNTLKEMQ  387 (388)
T ss_dssp             TCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHHHH---HHHHHHT--TCTTCHHHHHHHHHHHHHTC
T ss_pred             CCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHH---HHHHHHh--hCCCCHHHHHhHHHHHHHcc
Confidence            99999999999998642 3356789999999999999999977   5566543  3453 456666666665544

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}

Probab=99.84  E-value=4.7e-21  Score=192.20  Aligned_cols=151  Identities=13%  Similarity=0.237  Sum_probs=127.2

Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHhh----hCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHH
Q 036107          177 DTRAMSVLMDTLVKRNSVAHAYKVFLKFK----DCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTC  252 (441)
Q Consensus       177 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~----~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~  252 (441)
                      -..||++||++||+.|++++|.++|+.|+    .++.||..|||+||++||+.|++++|.++|++|.+.|+.||.+|||+
T Consensus       126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYnt  205 (1134)
T 3spa_A          126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAA  205 (1134)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence            35789999999999999999999998873    47999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhcCC-HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC------HHHHHHHHH
Q 036107          253 FIEHYCREKD-FRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTD------TSFYSSLIF  325 (441)
Q Consensus       253 li~~~~~~g~-~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~------~~~~~~li~  325 (441)
                      ||+++++.|+ .++|.++|++|.+.|+.||..||++++.++.+.+-+    +..+++ ..++.|+      ..+...|.+
T Consensus       206 LI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL----~~Vrkv-~P~f~p~~~~~~~~~t~~LL~d  280 (1134)
T 3spa_A          206 ALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVL----KAVHKV-KPTFSLPPQLPPPVNTSKLLRD  280 (1134)
T ss_dssp             HHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHH----HHHGGG-CCCCCCCCCCCCCCCCCTTTHH
T ss_pred             HHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHH----HHHHHh-CcccCCCCCCcccccchHHHHH
Confidence            9999999998 578999999999999999999999999877665333    333333 3455544      445555666


Q ss_pred             HHHhcCc
Q 036107          326 ILSKAVR  332 (441)
Q Consensus       326 ~~~~~g~  332 (441)
                      .|.+.+.
T Consensus       281 l~s~d~~  287 (1134)
T 3spa_A          281 VYAKDGR  287 (1134)
T ss_dssp             HHCCCSC
T ss_pred             HHccCCC
Confidence            6666553

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.83  E-value=1.1e-17  Score=161.66  Aligned_cols=313  Identities=12%  Similarity=-0.014  Sum_probs=248.7

Q ss_pred             HHHHHHHhcCCChHHHHHHHhhhhhHhhhhcCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHhcCCCccHHHHHHH
Q 036107           93 KVSEILRKRYPSPDKVVEALKCFCFTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTV  172 (441)
Q Consensus        93 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~g~~p~~~~y~~li~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~~  172 (441)
                      ..+..+...+.+.|++++|+..|+.....    ...+..+|..+..++...|++++|.+.|+++.+..+.          
T Consensus        27 ~~~~~~~~~~~~~g~~~~A~~~~~~~l~~----~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~----------   92 (450)
T 2y4t_A           27 EKHLELGKKLLAAGQLADALSQFHAAVDG----DPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMD----------   92 (450)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----------
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHh----CCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC----------
Confidence            56666777888899999999999754432    2236889999999999999999999999999986532          


Q ss_pred             HhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcH---HHHHHHHHH------------HHhcCCHHHHHHHHHH
Q 036107          173 MRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSS---QIFDVLIHG------------WCKTRKSDYAQKAMKE  237 (441)
Q Consensus       173 ~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~li~~------------~~~~~~~~~a~~~~~~  237 (441)
                          +..++..+...+.+.|++++|.+.|+.+....+.+.   ..+..++..            +.+.|++++|.+.|++
T Consensus        93 ----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~  168 (450)
T 2y4t_A           93 ----FTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDK  168 (450)
T ss_dssp             ----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             ----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence                678899999999999999999999999865444455   666666444            8899999999999999


Q ss_pred             HhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCH
Q 036107          238 MFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDT  317 (441)
Q Consensus       238 m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~  317 (441)
                      +.+.. +.+..++..+...|.+.|++++|.+.|+++.+.. +.+..+|..+...|...|++++|...|+++.+.  .|+.
T Consensus       169 ~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~p~~  244 (450)
T 2y4t_A          169 ILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKL--DQDH  244 (450)
T ss_dssp             HHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTC
T ss_pred             HHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCh
Confidence            98743 3467889999999999999999999999998763 346889999999999999999999999999864  3433


Q ss_pred             HHHHHHHHHHHhcCccchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC-----HHHHHHHHHHHHhcCChhhHHHHHH
Q 036107          318 SFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPD-----CETHARSLKMCCHKKRMKDGMLVLN  392 (441)
Q Consensus       318 ~~~~~li~~~~~~g~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-----~~t~~~li~~~~~~g~~~~a~~~~~  392 (441)
                      ......+....   ....+..+...+...|++++|++.|+++.+.  .|+     ...+..+...+.+.|++++|...  
T Consensus       245 ~~~~~~~~~~~---~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~--  317 (450)
T 2y4t_A          245 KRCFAHYKQVK---KLNKLIESAEELIRDGRYTDATSKYESVMKT--EPSIAEYTVRSKERICHCFSKDEKPVEAIRV--  317 (450)
T ss_dssp             HHHHHHHHHHH---HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCSSHHHHHHHHHHHHHHHHTTTCHHHHHHH--
T ss_pred             HHHHHHHHHHH---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHHHHCCCHHHHHHH--
Confidence            32211111111   1122445588899999999999999999874  455     45788889999999999999774  


Q ss_pred             HHHHHHHCCCCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHh
Q 036107          393 LMREMLSKGIVPQESTHKMLAEELEKKSLGNAKERIDELLTHAT  436 (441)
Q Consensus       393 ~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~  436 (441)
                       +.++.+. .+.+...|..+..+|...|++++|.+.++...+..
T Consensus       318 -~~~a~~~-~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~  359 (450)
T 2y4t_A          318 -CSEVLQM-EPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHN  359 (450)
T ss_dssp             -HHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS
T ss_pred             -HHHHHHh-CcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence             4444332 23367899999999999999999999999886543

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}

Probab=99.83  E-value=9.9e-21  Score=189.93  Aligned_cols=125  Identities=14%  Similarity=0.148  Sum_probs=114.1

Q ss_pred             CCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhh---CCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH
Q 036107          207 CISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQ---HGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVI  283 (441)
Q Consensus       207 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~---~g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~  283 (441)
                      ....-..|||+||++||+.|++++|.++|++|.+   .|+.||++|||+||++|++.|++++|.++|++|.+.|+.||.+
T Consensus       122 ~~~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvv  201 (1134)
T 3spa_A          122 QLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLL  201 (1134)
T ss_dssp             CCCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHH
T ss_pred             HHHhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHH
Confidence            4455667999999999999999999999988764   5899999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhcCCH-HHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcC
Q 036107          284 TCTIVMHALEKAKQI-YEALKVYEKMKSDDCLTDTSFYSSLIFILSKAV  331 (441)
Q Consensus       284 ~~~~ll~~~~~~~~~-~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g  331 (441)
                      |||+||+++++.|+. ++|.++|++|.+.|+.||..+|++++.+..+.+
T Consensus       202 TYntLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~  250 (1134)
T 3spa_A          202 SYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRAT  250 (1134)
T ss_dssp             HHHHHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHH
T ss_pred             HHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHH
Confidence            999999999999984 789999999999999999999997666555553

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.79  E-value=1.4e-16  Score=153.90  Aligned_cols=332  Identities=9%  Similarity=-0.000  Sum_probs=248.6

Q ss_pred             CCcccccchhhHHHhhhhchhhHHHHHhhhcCchhhHHHHHHHHHhcCCChHHHHHHHhhhhhHhhhhcCCCCCCHHHHH
Q 036107           55 DEDFVIPSLASWVESLKLNEQSRISSHALSEDHETDVDKVSEILRKRYPSPDKVVEALKCFCFTWAKTQTGYMHTPETYN  134 (441)
Q Consensus        55 ~~~~~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~g~~p~~~~y~  134 (441)
                      +...+..+...+.+.|+++.|..++..+.+.... + ..++..+...|.+.|+.++|+..|+......    ..+...|.
T Consensus        25 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~-~-~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~----p~~~~~~~   98 (450)
T 2y4t_A           25 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPD-N-YIAYYRRATVFLAMGKSKAALPDLTKVIQLK----MDFTAARL   98 (450)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-C-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----TTCHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCc-c-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC----CCcHHHHH
Confidence            4445666677788889999999999988875432 2 3567777888899999999999997544331    22578999


Q ss_pred             HHHHHHHcCCChhHHHHHHHHHHHhcCCCccH-HHHHHHHhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcHH
Q 036107          135 AMVEALGKSKKFGLMWELVKEIDELSNGYVSL-AAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQ  213 (441)
Q Consensus       135 ~li~~~~~~~~~~~a~~l~~~m~~~~~~~~~~-~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~  213 (441)
                      .+..+|.+.|++++|.+.|+++.+..+..+.. .....+........+..+...+.+.|++++|...|+.+....+.+..
T Consensus        99 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~  178 (450)
T 2y4t_A           99 QRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAE  178 (450)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChH
Confidence            99999999999999999999998854221100 11111111111122334455688999999999999998665567888


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH-----
Q 036107          214 IFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIV-----  288 (441)
Q Consensus       214 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~l-----  288 (441)
                      .+..+..+|.+.|++++|.++|+++.+.. +.+..+|..+...+...|++++|...|+++.+... .+...+..+     
T Consensus       179 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~~~~~~~~  256 (450)
T 2y4t_A          179 LRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQ-DHKRCFAHYKQVKK  256 (450)
T ss_dssp             HHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-ChHHHHHHHHHHHH
Confidence            99999999999999999999999998642 34688999999999999999999999999987532 244445444     


Q ss_pred             -------HHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCccchHHHHHHHHHhcCChhHHHHHHHHHHH
Q 036107          289 -------MHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEE  361 (441)
Q Consensus       289 -------l~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  361 (441)
                             ...|.+.|++++|...|+.+.+..  |+...+.  .         ..|..+...+.+.|++++|+..++++.+
T Consensus       257 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~--~---------~~~~~l~~~~~~~g~~~~A~~~~~~a~~  323 (450)
T 2y4t_A          257 LNKLIESAEELIRDGRYTDATSKYESVMKTE--PSIAEYT--V---------RSKERICHCFSKDEKPVEAIRVCSEVLQ  323 (450)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CSSHHHH--H---------HHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CcchHHH--H---------HHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence                   788999999999999999998743  3311100  0         2378888899999999999999999876


Q ss_pred             cCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCCCC-HHHHHHHH
Q 036107          362 DSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQ-ESTHKMLA  413 (441)
Q Consensus       362 ~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~~~~m~~~~~~p~-~~~~~~ll  413 (441)
                      .. ..+...|..+..+|...|++++|.+   .+++..+  +.|+ ...+..+-
T Consensus       324 ~~-p~~~~~~~~l~~~~~~~~~~~~A~~---~~~~al~--~~p~~~~~~~~l~  370 (450)
T 2y4t_A          324 ME-PDNVNALKDRAEAYLIEEMYDEAIQ---DYETAQE--HNENDQQIREGLE  370 (450)
T ss_dssp             HC-TTCHHHHHHHHHHHHHTTCHHHHHH---HHHHHHT--TSSSCHHHHHHHH
T ss_pred             hC-cccHHHHHHHHHHHHHhcCHHHHHH---HHHHHHH--hCcchHHHHHHHH
Confidence            52 3367889999999999999999977   4555443  4454 44454444

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=99.75  E-value=1.1e-15  Score=143.34  Aligned_cols=298  Identities=9%  Similarity=-0.041  Sum_probs=222.0

Q ss_pred             cCCChHHHHHHHh-hhhhHhhhhcCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHhcCCCccHHHHHHHHhhcCHH
Q 036107          101 RYPSPDKVVEALK-CFCFTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTR  179 (441)
Q Consensus       101 ~~~~~g~~~~A~~-~~~~~~~~~~~g~~p~~~~y~~li~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~  179 (441)
                      .+...|+++.|++ .|+.........-..+...|..+...+.+.|++++|.+.|+++.+..+.              +..
T Consensus        34 ~~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~--------------~~~   99 (368)
T 1fch_A           34 AHPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPK--------------HME   99 (368)
T ss_dssp             ------------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTT--------------CHH
T ss_pred             hhHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC--------------CHH
Confidence            3444577888887 6632111111111113456888889999999999999999999985522              678


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHH-------
Q 036107          180 AMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTC-------  252 (441)
Q Consensus       180 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~-------  252 (441)
                      ++..+...+.+.|++++|.+.|++.....+.+..++..+...|...|++++|.+.|+++...... +...+..       
T Consensus       100 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~  178 (368)
T 1fch_A          100 AWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPA-YAHLVTPAEEGAGG  178 (368)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTT-TGGGCC--------
T ss_pred             HHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHhhh
Confidence            89999999999999999999999985545668889999999999999999999999999875422 2222221       


Q ss_pred             --------HHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHH
Q 036107          253 --------FIEHYCREKDFRKVDYTLKEMQEKGCKP-SVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSL  323 (441)
Q Consensus       253 --------li~~~~~~g~~~~a~~l~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l  323 (441)
                              .+..+...|++++|...|+++.+..... +..++..+...+.+.|++++|...|+++.+.. +.+..     
T Consensus       179 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~-----  252 (368)
T 1fch_A          179 AGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYL-----  252 (368)
T ss_dssp             -------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHH-----
T ss_pred             hcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHH-----
Confidence                    2444558999999999999998764322 58899999999999999999999999988753 12232     


Q ss_pred             HHHHHhcCccchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCC
Q 036107          324 IFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIV  403 (441)
Q Consensus       324 i~~~~~~g~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~~~~m~~~~~~  403 (441)
                                 .|..+...|...|++++|+..|++..+.. ..+...+..+...|.+.|++++|...++...++......
T Consensus       253 -----------~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~  320 (368)
T 1fch_A          253 -----------LWNKLGATLANGNQSEEAVAAYRRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRG  320 (368)
T ss_dssp             -----------HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC--
T ss_pred             -----------HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCC
Confidence                       38888889999999999999999988653 345678899999999999999998876655554433322


Q ss_pred             C-------CHHHHHHHHHHHHhcCCccHHHHHHHH
Q 036107          404 P-------QESTHKMLAEELEKKSLGNAKERIDEL  431 (441)
Q Consensus       404 p-------~~~~~~~ll~~~~~~g~~~~a~~~~~~  431 (441)
                      |       ...+|..+..++.+.|++++|..++++
T Consensus       321 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~  355 (368)
T 1fch_A          321 PRGEGGAMSENIWSTLRLALSMLGQSDAYGAADAR  355 (368)
T ss_dssp             ----CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTT
T ss_pred             ccccccchhhHHHHHHHHHHHHhCChHhHHHhHHH
Confidence            2       267999999999999999999998764

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=99.75  E-value=8.2e-16  Score=150.84  Aligned_cols=358  Identities=11%  Similarity=-0.047  Sum_probs=266.0

Q ss_pred             hhHHHhhhhchhhHHHHHhhhcCchhhHHHHHHHHHhcCCChHHHHHHHhhhhhHhhhhcCCCCCCHHHHHHHHHHHHcC
Q 036107           64 ASWVESLKLNEQSRISSHALSEDHETDVDKVSEILRKRYPSPDKVVEALKCFCFTWAKTQTGYMHTPETYNAMVEALGKS  143 (441)
Q Consensus        64 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~g~~p~~~~y~~li~~~~~~  143 (441)
                      ..+.+.|+++.|...+..+.+..  |+. .++..+..+|.+.|++++|++.|+.....    .+.+..+|..+..++.+.
T Consensus        14 ~~~~~~g~~~~A~~~~~~al~~~--p~~-~~~~~la~~~~~~g~~~~A~~~~~~al~~----~p~~~~~~~~l~~~~~~~   86 (514)
T 2gw1_A           14 NQFFRNKKYDDAIKYYNWALELK--EDP-VFYSNLSACYVSVGDLKKVVEMSTKALEL----KPDYSKVLLRRASANEGL   86 (514)
T ss_dssp             HHHHHTSCHHHHHHHHHHHHHHC--CCH-HHHHHHHHHHHHHTCHHHHHHHHHHHHHH----CSCCHHHHHHHHHHHHHT
T ss_pred             HHHHHhccHHHHHHHHHHHHhcC--ccH-HHHHhHHHHHHHHhhHHHHHHHHHHHhcc----ChHHHHHHHHHHHHHHHH
Confidence            45566788999999999888876  454 56777788899999999999999644332    123567899999999999


Q ss_pred             CChhHHHHHHHHHHHhcCCCccH----------------------------------------------------HHHHH
Q 036107          144 KKFGLMWELVKEIDELSNGYVSL----------------------------------------------------AAMST  171 (441)
Q Consensus       144 ~~~~~a~~l~~~m~~~~~~~~~~----------------------------------------------------~~~~~  171 (441)
                      |++++|...|+++...++.....                                                    .....
T Consensus        87 g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (514)
T 2gw1_A           87 GKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMAS  166 (514)
T ss_dssp             TCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHHHH
T ss_pred             hhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHH
Confidence            99999999999987755311110                                                    00000


Q ss_pred             HHhhc-------------CHHHHHHHHHHHHh---cCCHHHHHHHHHHhhhC----C----------CCcHHHHHHHHHH
Q 036107          172 VMRRL-------------DTRAMSVLMDTLVK---RNSVAHAYKVFLKFKDC----I----------SLSSQIFDVLIHG  221 (441)
Q Consensus       172 ~~~~~-------------~~~~~~~li~~~~~---~g~~~~a~~~~~~~~~~----~----------~~~~~~~~~li~~  221 (441)
                      .+...             +...+......+..   .|++++|...|+++...    .          +.+..++..+...
T Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  246 (514)
T 2gw1_A          167 FFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIF  246 (514)
T ss_dssp             HHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHH
Confidence            00000             13333333333343   79999999999887431    1          3345677888888


Q ss_pred             HHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 036107          222 WCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEA  301 (441)
Q Consensus       222 ~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a  301 (441)
                      +...|++++|.+.|++..+..  |+...|..+...+...|++++|...+++..+... .+...+..+...+...|++++|
T Consensus       247 ~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A  323 (514)
T 2gw1_A          247 KFLKNDPLGAHEDIKKAIELF--PRVNSYIYMALIMADRNDSTEYYNYFDKALKLDS-NNSSVYYHRGQMNFILQNYDQA  323 (514)
T ss_dssp             HHHSSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCT-TCTHHHHHHHHHHHHTTCTTHH
T ss_pred             HHHCCCHHHHHHHHHHHHhhC--ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCc-CCHHHHHHHHHHHHHhCCHHHH
Confidence            999999999999999988754  4478888888999999999999999999877643 3567888888999999999999


Q ss_pred             HHHHHHHhhCCCCCCHHHHHHHHHHHHhcCcc------------------chHHHHHHHHHhcCChhHHHHHHHHHHHcC
Q 036107          302 LKVYEKMKSDDCLTDTSFYSSLIFILSKAVRF------------------LIYNTMISSACVRSEEGNALKLRQKIEEDS  363 (441)
Q Consensus       302 ~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~------------------~~~~~li~~~~~~g~~~~a~~~~~~m~~~g  363 (441)
                      ...|++..+... .+...+..+...|.+.|+.                  ..|..+...|...|++++|+..++++.+..
T Consensus       324 ~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~  402 (514)
T 2gw1_A          324 GKDFDKAKELDP-ENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELE  402 (514)
T ss_dssp             HHHHHHHHHTCS-SCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCh-hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhh
Confidence            999999887642 2456777777777777776                  667888899999999999999999987532


Q ss_pred             -CCCC----HHHHHHHHHHHHh---cCChhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHH
Q 036107          364 -CKPD----CETHARSLKMCCH---KKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEKKSLGNAKERIDELLTHA  435 (441)
Q Consensus       364 -~~p~----~~t~~~li~~~~~---~g~~~~a~~~~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~  435 (441)
                       -.|+    ...+..+...+..   .|++++|.+.++...+   . .+.+...+..+...+.+.|++++|.+.++...+.
T Consensus       403 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~---~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~  478 (514)
T 2gw1_A          403 NKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASK---L-DPRSEQAKIGLAQMKLQQEDIDEAITLFEESADL  478 (514)
T ss_dssp             HTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHH---H-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             hccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHH---h-CcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence             1222    3478888899999   9999999775444333   2 2335678889999999999999999999987665


Q ss_pred             h
Q 036107          436 T  436 (441)
Q Consensus       436 ~  436 (441)
                      .
T Consensus       479 ~  479 (514)
T 2gw1_A          479 A  479 (514)
T ss_dssp             C
T ss_pred             c
Confidence            4

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=99.73  E-value=2.7e-15  Score=147.11  Aligned_cols=318  Identities=10%  Similarity=-0.032  Sum_probs=243.6

Q ss_pred             HHHHhcCCChHHHHHHHhhhhhHhhhhcCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHhcCCCccHHHHHHHHhh
Q 036107           96 EILRKRYPSPDKVVEALKCFCFTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRR  175 (441)
Q Consensus        96 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~g~~p~~~~y~~li~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~  175 (441)
                      ..+...+.+.|++++|+..|......     .|+...|..+..++.+.|++++|.+.++++.+..+.             
T Consensus        10 ~~~g~~~~~~g~~~~A~~~~~~al~~-----~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-------------   71 (514)
T 2gw1_A           10 KDKGNQFFRNKKYDDAIKYYNWALEL-----KEDPVFYSNLSACYVSVGDLKKVVEMSTKALELKPD-------------   71 (514)
T ss_dssp             HHHHHHHHHTSCHHHHHHHHHHHHHH-----CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSC-------------
T ss_pred             HHHHHHHHHhccHHHHHHHHHHHHhc-----CccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChH-------------
Confidence            33446667789999999999755443     279999999999999999999999999999986532             


Q ss_pred             cCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCc--------------------------------------------
Q 036107          176 LDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLS--------------------------------------------  211 (441)
Q Consensus       176 ~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~--------------------------------------------  211 (441)
                       +..++..+..++.+.|++++|...|+.+....+++                                            
T Consensus        72 -~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  150 (514)
T 2gw1_A           72 -YSKVLLRRASANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKE  150 (514)
T ss_dssp             -CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------
T ss_pred             -HHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhH
Confidence             67899999999999999999999998873322211                                            


Q ss_pred             -----------------------------------HHHHHHHHHHHH---hcCCHHHHHHHHHHHhh-----CCC-----
Q 036107          212 -----------------------------------SQIFDVLIHGWC---KTRKSDYAQKAMKEMFQ-----HGF-----  243 (441)
Q Consensus       212 -----------------------------------~~~~~~li~~~~---~~~~~~~a~~~~~~m~~-----~g~-----  243 (441)
                                                         ...+......+.   +.|++++|..+|+++.+     ..-     
T Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~  230 (514)
T 2gw1_A          151 RKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDE  230 (514)
T ss_dssp             ------CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCH
T ss_pred             HHhhccCCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCcccc
Confidence                                               222223333333   38999999999999987     311     


Q ss_pred             ---CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHH
Q 036107          244 ---SPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFY  320 (441)
Q Consensus       244 ---~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~  320 (441)
                         +.+..++..+...+...|++++|...|+++.+....  ...+..+...+...|++++|...++.+.+.. +.+..++
T Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~  307 (514)
T 2gw1_A          231 KLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVY  307 (514)
T ss_dssp             HHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHH
T ss_pred             ccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHH
Confidence               223567888889999999999999999999887543  8889999999999999999999999998764 3356677


Q ss_pred             HHHHHHHHhcCcc------------------chHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 036107          321 SSLIFILSKAVRF------------------LIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKK  382 (441)
Q Consensus       321 ~~li~~~~~~g~~------------------~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g  382 (441)
                      ..+...|.+.|+.                  ..|..+...|...|++++|+..++++.+.. ..+..++..+...+.+.|
T Consensus       308 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~  386 (514)
T 2gw1_A          308 YHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKN  386 (514)
T ss_dssp             HHHHHHHHHTTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCC
Confidence            8888888888877                  567778888888999999999998887642 234567788888888999


Q ss_pred             ChhhHHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHh---cCCccHHHHHHHHHHHHh
Q 036107          383 RMKDGMLVLNLMREMLSKGI--VPQESTHKMLAEELEK---KSLGNAKERIDELLTHAT  436 (441)
Q Consensus       383 ~~~~a~~~~~~~~~m~~~~~--~p~~~~~~~ll~~~~~---~g~~~~a~~~~~~m~~~~  436 (441)
                      ++++|.+.++...+......  .-....+..+...+.+   .|++++|.+.++......
T Consensus       387 ~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~  445 (514)
T 2gw1_A          387 DFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD  445 (514)
T ss_dssp             CHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC
T ss_pred             CHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC
Confidence            99998775554444322211  0114478888888888   899999999888876543

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=99.71  E-value=1e-13  Score=128.91  Aligned_cols=313  Identities=11%  Similarity=-0.021  Sum_probs=241.4

Q ss_pred             HHHHHHHhcCCChHHHHHHHhhhhhHhhhhcCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHhcCCCccHHHHHHH
Q 036107           93 KVSEILRKRYPSPDKVVEALKCFCFTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTV  172 (441)
Q Consensus        93 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~g~~p~~~~y~~li~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~~  172 (441)
                      .....+...+.+.|++++|+..|+.....    .+.+...|..+...+...|++++|.+.+++..+..+.          
T Consensus         4 ~~~~~~~~~~~~~g~~~~A~~~~~~~l~~----~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~----------   69 (359)
T 3ieg_A            4 EKHLELGKKLLAAGQLADALSQFHAAVDG----DPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMD----------   69 (359)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT----------
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhh----CcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC----------
Confidence            34555667788899999999999654432    2236889999999999999999999999999886522          


Q ss_pred             HhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCC---CcHHHHHHH------------HHHHHhcCCHHHHHHHHHH
Q 036107          173 MRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCIS---LSSQIFDVL------------IHGWCKTRKSDYAQKAMKE  237 (441)
Q Consensus       173 ~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~---~~~~~~~~l------------i~~~~~~~~~~~a~~~~~~  237 (441)
                          +...+..+...+...|++++|...|+......+   .+...+..+            ...+...|++++|.+.|++
T Consensus        70 ----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~  145 (359)
T 3ieg_A           70 ----FTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDK  145 (359)
T ss_dssp             ----CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             ----cchHHHHHHHHHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence                668899999999999999999999999865444   455566555            5788899999999999999


Q ss_pred             HhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCH
Q 036107          238 MFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDT  317 (441)
Q Consensus       238 m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~  317 (441)
                      +.+.. +.+...+..+...+...|++++|...+++..+.. +.+..++..+...+...|++++|...|+...+... .+.
T Consensus       146 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~-~~~  222 (359)
T 3ieg_A          146 ILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQ-DHK  222 (359)
T ss_dssp             HHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCH
T ss_pred             HHHhC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc-cch
Confidence            98753 3467889999999999999999999999998864 34788999999999999999999999999987532 122


Q ss_pred             HHHHHHHHHHHhcCccchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHH-----HHHHHHHHHHhcCChhhHHHHHH
Q 036107          318 SFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCE-----THARSLKMCCHKKRMKDGMLVLN  392 (441)
Q Consensus       318 ~~~~~li~~~~~~g~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~-----t~~~li~~~~~~g~~~~a~~~~~  392 (441)
                      ..+..+    ...........+...+.+.|++++|++.+++..+..  |+..     .+..+...+.+.|++++|.+.++
T Consensus       223 ~~~~~~----~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~  296 (359)
T 3ieg_A          223 RCFAHY----KQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE--PSVAEYTVRSKERICHCFSKDEKPVEAIRICS  296 (359)
T ss_dssp             HHHHHH----HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHH----HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHHHHHHccCHHHHHHHHH
Confidence            221111    000011123344677889999999999999988653  4432     34456778899999999987555


Q ss_pred             HHHHHHHCCCCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHh
Q 036107          393 LMREMLSKGIVPQESTHKMLAEELEKKSLGNAKERIDELLTHAT  436 (441)
Q Consensus       393 ~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~  436 (441)
                      ...+   . .+.+...+..+...+.+.|++++|.+.++...+..
T Consensus       297 ~~~~---~-~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~  336 (359)
T 3ieg_A          297 EVLQ---M-EPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHN  336 (359)
T ss_dssp             HHHH---H-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred             HHHH---h-CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence            4433   2 23367899999999999999999999999877654

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.71  E-value=4.5e-15  Score=139.24  Aligned_cols=269  Identities=10%  Similarity=-0.033  Sum_probs=213.1

Q ss_pred             CHHHHHHHHHHHHcCCChhHHHHHHHHHHHhcCCCccHHHHHHHHhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCC
Q 036107          129 TPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCI  208 (441)
Q Consensus       129 ~~~~y~~li~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~  208 (441)
                      +...|..+...+.+.|++++|.+.|+++....+.              +..++..+...+.+.|++++|.+.|++.....
T Consensus        64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~--------------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~  129 (365)
T 4eqf_A           64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPG--------------DAEAWQFLGITQAENENEQAAIVALQRCLELQ  129 (365)
T ss_dssp             TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT--------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcC--------------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence            4456888899999999999999999999986532              67899999999999999999999999985545


Q ss_pred             CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC-----------HhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 036107          209 SLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPD-----------GVSYTCFIEHYCREKDFRKVDYTLKEMQEKG  277 (441)
Q Consensus       209 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-----------~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g  277 (441)
                      +.+..++..+...|.+.|++++|.+.|+++.+..  |+           ...+..+...+.+.|++++|..+|+++.+..
T Consensus       130 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~  207 (365)
T 4eqf_A          130 PNNLKALMALAVSYTNTSHQQDACEALKNWIKQN--PKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQN  207 (365)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--HHHHCC-------------------CCHHHHHHHHHHHHHHHHS
T ss_pred             CCCHHHHHHHHHHHHccccHHHHHHHHHHHHHhC--ccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhC
Confidence            5678899999999999999999999999998742  33           2233445788999999999999999998864


Q ss_pred             CC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCccchHHHHHHHHHhcCChhHHHHHH
Q 036107          278 CK-PSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLR  356 (441)
Q Consensus       278 ~~-p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~~~li~~~~~~g~~~~a~~~~  356 (441)
                      .. ++..++..+...|.+.|++++|.+.|++..+.. +.+..                +|+.+...|...|++++|+..|
T Consensus       208 p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~----------------~~~~l~~~~~~~g~~~~A~~~~  270 (365)
T 4eqf_A          208 GDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVR-PEDYS----------------LWNRLGATLANGDRSEEAVEAY  270 (365)
T ss_dssp             CSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHH----------------HHHHHHHHHHHTTCHHHHHHHH
T ss_pred             cCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHH----------------HHHHHHHHHHHcCCHHHHHHHH
Confidence            32 268899999999999999999999999998753 22333                3888999999999999999999


Q ss_pred             HHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCCC--------CHHHHHHHHHHHHhcCCccHHHHH
Q 036107          357 QKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVP--------QESTHKMLAEELEKKSLGNAKERI  428 (441)
Q Consensus       357 ~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~~~~m~~~~~~p--------~~~~~~~ll~~~~~~g~~~~a~~~  428 (441)
                      ++..+.. ..+..++..+...|.+.|++++|.+.++...++......|        +...|..+-.++...|+.+.+.++
T Consensus       271 ~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~  349 (365)
T 4eqf_A          271 TRALEIQ-PGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAA  349 (365)
T ss_dssp             HHHHHHC-TTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHH
T ss_pred             HHHHhcC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHH
Confidence            9988752 2347788999999999999999988777666655443222        367899999999999999998887


Q ss_pred             HHH
Q 036107          429 DEL  431 (441)
Q Consensus       429 ~~~  431 (441)
                      .+.
T Consensus       350 ~~~  352 (365)
T 4eqf_A          350 NLG  352 (365)
T ss_dssp             HTT
T ss_pred             HHh
Confidence            654

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=99.69  E-value=2.6e-14  Score=131.53  Aligned_cols=269  Identities=10%  Similarity=-0.027  Sum_probs=165.0

Q ss_pred             CCHHHHHHHHHHHHcCCChhHHHHHHHHHHHhcCCCccHHHHHHHHhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhC
Q 036107          128 HTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDC  207 (441)
Q Consensus       128 p~~~~y~~li~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~  207 (441)
                      .+...+..+...+...|++++|.++|+++.+..+.              +...+..+...+...|++++|..+++++...
T Consensus        20 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~--------------~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~   85 (330)
T 3hym_B           20 ENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPF--------------HASCLPVHIGTLVELNKANELFYLSHKLVDL   85 (330)
T ss_dssp             CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--------------CTTTHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC--------------ChhhHHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence            34455666666666677777777777777664422              3445555666666777777777777776443


Q ss_pred             CCCcHHHHHHHHHHHHhcC-CHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 036107          208 ISLSSQIFDVLIHGWCKTR-KSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCT  286 (441)
Q Consensus       208 ~~~~~~~~~~li~~~~~~~-~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~  286 (441)
                      .+.+...+..+...+...| ++++|.+.|++..+.. +.+...|..+...+...|++++|...|++..+.... +...+.
T Consensus        86 ~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~  163 (330)
T 3hym_B           86 YPSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKG-CHLPML  163 (330)
T ss_dssp             CTTSTHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTT-CSHHHH
T ss_pred             CcCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccc-cHHHHH
Confidence            4445566677777777777 7777777777776542 224556677777777777777777777776665322 345555


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCccchHHHHHHHHHhcCChhHHHHHHHHHHHcC---
Q 036107          287 IVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDS---  363 (441)
Q Consensus       287 ~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g---  363 (441)
                      .+...|...|++++|...+++..+... .+..                .|..+...|...|++++|+..+++..+..   
T Consensus       164 ~l~~~~~~~~~~~~A~~~~~~al~~~~-~~~~----------------~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~  226 (330)
T 3hym_B          164 YIGLEYGLTNNSKLAERFFSQALSIAP-EDPF----------------VMHEVGVVAFQNGEWKTAEKWFLDALEKIKAI  226 (330)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHTTCT-TCHH----------------HHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTT
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHHHhCC-CChH----------------HHHHHHHHHHHcccHHHHHHHHHHHHHHhhhc
Confidence            566777777777777777777766431 1222                25666666666666777777776665321   


Q ss_pred             -----CCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCccHHHHHHHHHH
Q 036107          364 -----CKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEKKSLGNAKERIDELLT  433 (441)
Q Consensus       364 -----~~p~~~t~~~li~~~~~~g~~~~a~~~~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~  433 (441)
                           ...+..++..+...+.+.|++++|.+.++...+   .. +.+...+..+...+.+.|++++|.+.++...
T Consensus       227 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~---~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  297 (330)
T 3hym_B          227 GNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALV---LI-PQNASTYSAIGYIHSLMGNFENAVDYFHTAL  297 (330)
T ss_dssp             SCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HS-TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTT
T ss_pred             cccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHh---hC-ccchHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence                 122234666666666777777777553333222   11 2244566666666777777777776666543

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.67  E-value=9.4e-14  Score=127.60  Aligned_cols=267  Identities=9%  Similarity=-0.034  Sum_probs=212.6

Q ss_pred             HHHHHHHHHHHHcCCChhHHHHHHHHHHHhcCCCccHHHHHHHHhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCC
Q 036107          130 PETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCIS  209 (441)
Q Consensus       130 ~~~y~~li~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~  209 (441)
                      ...|-.+...+...|++++|.++|+++.+..+.              +..++..+...+.+.|++++|.+.|++.....+
T Consensus        21 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~--------------~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~   86 (327)
T 3cv0_A           21 HENPMEEGLSMLKLANLAEAALAFEAVCQAAPE--------------REEAWRSLGLTQAENEKDGLAIIALNHARMLDP   86 (327)
T ss_dssp             SSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred             hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC--------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCc
Confidence            345667778889999999999999999886522              678888999999999999999999999865556


Q ss_pred             CcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCH-hhHHHH--------------HH-HHHhcCCHHHHHHHHHHH
Q 036107          210 LSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDG-VSYTCF--------------IE-HYCREKDFRKVDYTLKEM  273 (441)
Q Consensus       210 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~-~~~~~l--------------i~-~~~~~g~~~~a~~l~~~m  273 (441)
                      .+..++..+...|...|++++|.+.|++..+..  |+. ..+..+              .. .+...|++++|...++++
T Consensus        87 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~  164 (327)
T 3cv0_A           87 KDIAVHAALAVSHTNEHNANAALASLRAWLLSQ--PQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAA  164 (327)
T ss_dssp             TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS--TTTTTC--------------------CCTTSHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHH
Confidence            678889999999999999999999999998753  333 333333              22 377889999999999999


Q ss_pred             HHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCccchHHHHHHHHHhcCChhHHH
Q 036107          274 QEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNAL  353 (441)
Q Consensus       274 ~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~~~li~~~~~~g~~~~a~  353 (441)
                      .+... .+...+..+...+.+.|++++|.+.++++.+... .+..                .|..+...|...|++++|+
T Consensus       165 ~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~----------------~~~~l~~~~~~~~~~~~A~  226 (327)
T 3cv0_A          165 LEMNP-NDAQLHASLGVLYNLSNNYDSAAANLRRAVELRP-DDAQ----------------LWNKLGATLANGNRPQEAL  226 (327)
T ss_dssp             HHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHH----------------HHHHHHHHHHHTTCHHHHH
T ss_pred             HhhCC-CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CcHH----------------HHHHHHHHHHHcCCHHHHH
Confidence            87643 3788999999999999999999999999987531 2232                3888888999999999999


Q ss_pred             HHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCCC--------CHHHHHHHHHHHHhcCCccHH
Q 036107          354 KLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVP--------QESTHKMLAEELEKKSLGNAK  425 (441)
Q Consensus       354 ~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~~~~m~~~~~~p--------~~~~~~~ll~~~~~~g~~~~a  425 (441)
                      +.+++..+.. ..+..++..+...+.+.|++++|.+.++...++......+        +...|..+..++.+.|++++|
T Consensus       227 ~~~~~a~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A  305 (327)
T 3cv0_A          227 DAYNRALDIN-PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLV  305 (327)
T ss_dssp             HHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHcC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHH
Confidence            9999988653 3356788899999999999999988665444432211011        467899999999999999999


Q ss_pred             HHHHHH
Q 036107          426 ERIDEL  431 (441)
Q Consensus       426 ~~~~~~  431 (441)
                      ..+++.
T Consensus       306 ~~~~~~  311 (327)
T 3cv0_A          306 ELTYAQ  311 (327)
T ss_dssp             HHHTTC
T ss_pred             HHHHHH
Confidence            998865

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=99.66  E-value=6.5e-13  Score=123.50  Aligned_cols=327  Identities=9%  Similarity=-0.023  Sum_probs=239.9

Q ss_pred             chhhHHHhhhhchhhHHHHHhhhcCchhhHHHHHHHHHhcCCChHHHHHHHhhhhhHhhhhcCCCCC-CHHHHHHHHHHH
Q 036107           62 SLASWVESLKLNEQSRISSHALSEDHETDVDKVSEILRKRYPSPDKVVEALKCFCFTWAKTQTGYMH-TPETYNAMVEAL  140 (441)
Q Consensus        62 ~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~g~~p-~~~~y~~li~~~  140 (441)
                      +-..+...|+++.|...+..+.+.....  ..++..+...+...|++++|+..|+.....     .| +...|..+...+
T Consensus         9 ~~~~~~~~g~~~~A~~~~~~~l~~~p~~--~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~~~~l~~~~   81 (359)
T 3ieg_A            9 LGKKLLAAGQLADALSQFHAAVDGDPDN--YIAYYRRATVFLAMGKSKAALPDLTKVIAL-----KMDFTAARLQRGHLL   81 (359)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHhhCccc--HHHHHHHHHHHHHccCHHHHHHHHHHHHHh-----CCCcchHHHHHHHHH
Confidence            3445567788999999999888754332  256677778888999999999999644432     23 578999999999


Q ss_pred             HcCCChhHHHHHHHHHHHhcCCC-ccHHHHHHHHhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcHHHHHHHH
Q 036107          141 GKSKKFGLMWELVKEIDELSNGY-VSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLI  219 (441)
Q Consensus       141 ~~~~~~~~a~~l~~~m~~~~~~~-~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li  219 (441)
                      ...|++++|.+.|++..+..+.. ........+........+..+...+...|++++|.+.++.+....+.+...+..+.
T Consensus        82 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~  161 (359)
T 3ieg_A           82 LKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRA  161 (359)
T ss_dssp             HHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             HHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHH
Confidence            99999999999999998854200 11111111100001122233367889999999999999998665567788899999


Q ss_pred             HHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHH------------H
Q 036107          220 HGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCT------------I  287 (441)
Q Consensus       220 ~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~------------~  287 (441)
                      ..+...|++++|...+++..+.. +.+..+|..+...+...|++++|...|++..+.... +...+.            .
T Consensus       162 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~~~~~~~~~~~~  239 (359)
T 3ieg_A          162 ECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQD-HKRCFAHYKQVKKLNKLIE  239 (359)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcc-chHHHHHHHHHHHHHHHHH
Confidence            99999999999999999998763 346789999999999999999999999999875322 333333            2


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCccchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC
Q 036107          288 VMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPD  367 (441)
Q Consensus       288 ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~  367 (441)
                      +...+.+.|++++|...+++..+.... +.....            ..+..+...+...|++++|++.+++..+.. ..+
T Consensus       240 ~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~------------~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~  305 (359)
T 3ieg_A          240 SAEELIRDGRYTDATSKYESVMKTEPS-VAEYTV------------RSKERICHCFSKDEKPVEAIRICSEVLQME-PDN  305 (359)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCCS-SHHHHH------------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTC
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHH------------HHHHHHHHHHHHccCHHHHHHHHHHHHHhC-ccc
Confidence            366789999999999999999885422 221110            125567788899999999999999998752 336


Q ss_pred             HHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHH
Q 036107          368 CETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQ-ESTHKMLAEEL  416 (441)
Q Consensus       368 ~~t~~~li~~~~~~g~~~~a~~~~~~~~~m~~~~~~p~-~~~~~~ll~~~  416 (441)
                      ..++..+...+...|++++|.+   .+++..+  +.|+ ...+..+..+.
T Consensus       306 ~~~~~~~~~~~~~~g~~~~A~~---~~~~a~~--~~p~~~~~~~~l~~~~  350 (359)
T 3ieg_A          306 VNALKDRAEAYLIEEMYDEAIQ---DYEAAQE--HNENDQQIREGLEKAQ  350 (359)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHH---HHHHHHT--TCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHH---HHHHHHh--cCCCChHHHHHHHHHH
Confidence            7788999999999999999977   5555443  3455 44555544443

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=99.65  E-value=1.2e-13  Score=126.98  Aligned_cols=284  Identities=10%  Similarity=-0.043  Sum_probs=221.8

Q ss_pred             HHhcCCChHHHHHHHhhhhhHhhhhcCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHhcCCCccHHHHHHHHhhcC
Q 036107           98 LRKRYPSPDKVVEALKCFCFTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLD  177 (441)
Q Consensus        98 l~~~~~~~g~~~~A~~~~~~~~~~~~~g~~p~~~~y~~li~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~  177 (441)
                      +...+...|++++|++.|+......    ..+...+..+...+...|++++|.++++++.+..+.              +
T Consensus        28 ~a~~~~~~g~~~~A~~~~~~~l~~~----p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~--------------~   89 (330)
T 3hym_B           28 LAERHYYNCDFKMCYKLTSVVMEKD----PFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPS--------------N   89 (330)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHC----TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT--------------S
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHcC----CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcC--------------C
Confidence            3344445588888998886544321    123456777788889999999999999999886532              5


Q ss_pred             HHHHHHHHHHHHhcC-CHHHHHHHHHHhhhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHH
Q 036107          178 TRAMSVLMDTLVKRN-SVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEH  256 (441)
Q Consensus       178 ~~~~~~li~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~  256 (441)
                      ..++..+...+...| ++++|.+.|++.....+.+...|..+...+...|++++|.+.|++..+.. +.+...+..+...
T Consensus        90 ~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~  168 (330)
T 3hym_B           90 PVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLE  168 (330)
T ss_dssp             THHHHHHHHHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHH
Confidence            678888999999999 99999999999865555667789999999999999999999999998753 2245677789999


Q ss_pred             HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCC----C----CCCHHHHHHHHHHHH
Q 036107          257 YCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDD----C----LTDTSFYSSLIFILS  328 (441)
Q Consensus       257 ~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g----~----~~~~~~~~~li~~~~  328 (441)
                      +...|++++|...+++..+.. +.+...+..+...+...|++++|...+++..+..    -    +...           
T Consensus       169 ~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~-----------  236 (330)
T 3hym_B          169 YGLTNNSKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWE-----------  236 (330)
T ss_dssp             HHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCC-----------
T ss_pred             HHHHhhHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHH-----------
Confidence            999999999999999998864 3467899999999999999999999999887631    0    1111           


Q ss_pred             hcCccchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCCC-CHH
Q 036107          329 KAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVP-QES  407 (441)
Q Consensus       329 ~~g~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~~~~m~~~~~~p-~~~  407 (441)
                           ..|..+...|...|++++|++.+++..+.. ..+...+..+...+.+.|++++|.+   .+++..  .+.| +..
T Consensus       237 -----~~~~~la~~~~~~g~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~---~~~~al--~~~p~~~~  305 (330)
T 3hym_B          237 -----PLLNNLGHVCRKLKKYAEALDYHRQALVLI-PQNASTYSAIGYIHSLMGNFENAVD---YFHTAL--GLRRDDTF  305 (330)
T ss_dssp             -----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCHHHHHH---HHHTTT--TTCSCCHH
T ss_pred             -----HHHHHHHHHHHHhcCHHHHHHHHHHHHhhC-ccchHHHHHHHHHHHHhccHHHHHH---HHHHHH--ccCCCchH
Confidence                 238888899999999999999999988653 3356788889999999999999977   555532  3455 566


Q ss_pred             HHHHHHHHH-HhcCCcc
Q 036107          408 THKMLAEEL-EKKSLGN  423 (441)
Q Consensus       408 ~~~~ll~~~-~~~g~~~  423 (441)
                      .+..+..++ ...|+.+
T Consensus       306 ~~~~l~~~~~~~~g~~~  322 (330)
T 3hym_B          306 SVTMLGHCIEMYIGDSE  322 (330)
T ss_dssp             HHHHHHHHHHTTTTC--
T ss_pred             HHHHHHHHHHHHhCchh
Confidence            777777777 3455543

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=99.65  E-value=5.1e-16  Score=144.95  Aligned_cols=282  Identities=12%  Similarity=0.044  Sum_probs=118.1

Q ss_pred             hhhhchhhHHHHHhhhcCchhhHHHHHHHHHhcCCChHHHHHHHhhhhhHhhhhcCCCCCCHHHHHHHHHHHHcCCChhH
Q 036107           69 SLKLNEQSRISSHALSEDHETDVDKVSEILRKRYPSPDKVVEALKCFCFTWAKTQTGYMHTPETYNAMVEALGKSKKFGL  148 (441)
Q Consensus        69 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~g~~p~~~~y~~li~~~~~~~~~~~  148 (441)
                      .+++++|......+      ++ +.++..|..++.+.|++.+|++.|..         .+|...|..++.++...|++++
T Consensus        16 ~~~ld~A~~fae~~------~~-~~vWs~La~A~l~~g~~~eAIdsfik---------a~D~~~y~~V~~~ae~~g~~Ee   79 (449)
T 1b89_A           16 IGNLDRAYEFAERC------NE-PAVWSQLAKAQLQKGMVKEAIDSYIK---------ADDPSSYMEVVQAANTSGNWEE   79 (449)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ccCHHHHHHHHHhC------CC-hHHHHHHHHHHHHcCCHHHHHHHHHc---------CCCHHHHHHHHHHHHhCCCHHH
Confidence            34566666665543      33 36888888888888888888888831         2577788888888888888888


Q ss_pred             HHHHHHHHHHhcCCCccHHHHHHHHhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcHHHHHHHHHHHHhcCCH
Q 036107          149 MWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKS  228 (441)
Q Consensus       149 a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~  228 (441)
                      |+..++...+..               .++.+.+.++.+|.+.|+++++.++++      .|+..+|+.+...|...|.+
T Consensus        80 Ai~yl~~ark~~---------------~~~~i~~~Li~~Y~Klg~l~e~e~f~~------~pn~~a~~~IGd~~~~~g~y  138 (449)
T 1b89_A           80 LVKYLQMARKKA---------------RESYVETELIFALAKTNRLAELEEFIN------GPNNAHIQQVGDRCYDEKMY  138 (449)
T ss_dssp             --------------------------------------------CHHHHTTTTT------CC----------------CT
T ss_pred             HHHHHHHHHHhC---------------ccchhHHHHHHHHHHhCCHHHHHHHHc------CCcHHHHHHHHHHHHHcCCH
Confidence            888666655521               155677788888888888888777764      26666888888888888888


Q ss_pred             HHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 036107          229 DYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKM  308 (441)
Q Consensus       229 ~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m  308 (441)
                      ++|...|..+         ..|..+..++.+.|++++|.+.++.+      .++.+|..++.+|...|+++.|......+
T Consensus       139 eeA~~~Y~~a---------~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L  203 (449)
T 1b89_A          139 DAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHI  203 (449)
T ss_dssp             TTHHHHHHHT---------TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTT
T ss_pred             HHHHHHHHHh---------hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHH
Confidence            8888888866         36888888888888888888888877      26788888888888888888885444432


Q ss_pred             hhCCCCCCHHHHHHHHHHHHhcCccchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHH
Q 036107          309 KSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGM  388 (441)
Q Consensus       309 ~~~g~~~~~~~~~~li~~~~~~g~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~  388 (441)
                      .   ..|+.                  ...++..|.+.|++++|+.+++.-.... .-....|+-+--+|++- +++...
T Consensus       204 ~---~~ad~------------------l~~lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky-~p~k~~  260 (449)
T 1b89_A          204 V---VHADE------------------LEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKF-KPQKMR  260 (449)
T ss_dssp             T---TCHHH------------------HHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTT-CHHHHH
T ss_pred             H---hCHhh------------------HHHHHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhc-CHHHHH
Confidence            2   23322                  4457888899999999999999877443 44556777777777665 334433


Q ss_pred             HHHHHHHHHHHCCCCC------CHHHHHHHHHHHHhcCCccHHHH
Q 036107          389 LVLNLMREMLSKGIVP------QESTHKMLAEELEKKSLGNAKER  427 (441)
Q Consensus       389 ~~~~~~~~m~~~~~~p------~~~~~~~ll~~~~~~g~~~~a~~  427 (441)
                      +.++.+..  .-.+.|      +...|.-+.-.|.+.++++.|..
T Consensus       261 ehl~~~~~--~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~  303 (449)
T 1b89_A          261 EHLELFWS--RVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII  303 (449)
T ss_dssp             HHHHHHST--TSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHH--HhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHH
Confidence            33333332  123333      34467777777888888886654

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=99.64  E-value=5.9e-13  Score=131.32  Aligned_cols=236  Identities=10%  Similarity=-0.024  Sum_probs=147.4

Q ss_pred             CHHHHHHHHHHhhhCCCCcH-------HHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHH
Q 036107          193 SVAHAYKVFLKFKDCISLSS-------QIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRK  265 (441)
Q Consensus       193 ~~~~a~~~~~~~~~~~~~~~-------~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~  265 (441)
                      ++++|..+|+.+....+.+.       .++..+-..+...|++++|.+.|++..+.  .|+..+|..+...+...|++++
T Consensus       217 ~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~  294 (537)
T 3fp2_A          217 LLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINL--HPTPNSYIFLALTLADKENSQE  294 (537)
T ss_dssp             HHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHH
T ss_pred             HHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHH
Confidence            55666666665533222222       23444445555666666666666666653  3445566666666666666666


Q ss_pred             HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCcc------------
Q 036107          266 VDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRF------------  333 (441)
Q Consensus       266 a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~------------  333 (441)
                      |...|++..+... .+..+|..+...+...|++++|...|++..+.. +.+...+..+...|.+.|+.            
T Consensus       295 A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~  372 (537)
T 3fp2_A          295 FFKFFQKAVDLNP-EYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKL  372 (537)
T ss_dssp             HHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhccCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            6666666655432 245566666666666666666666666665532 11234555555555555555            


Q ss_pred             ------chHHHHHHHHHhcCChhHHHHHHHHHHHcC-----CCCCHHHHHHHHHHHHhc----------CChhhHHHHHH
Q 036107          334 ------LIYNTMISSACVRSEEGNALKLRQKIEEDS-----CKPDCETHARSLKMCCHK----------KRMKDGMLVLN  392 (441)
Q Consensus       334 ------~~~~~li~~~~~~g~~~~a~~~~~~m~~~g-----~~p~~~t~~~li~~~~~~----------g~~~~a~~~~~  392 (441)
                            ..|..+...|...|++++|++.|++..+..     .......+......+...          |++++|...++
T Consensus       373 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~  452 (537)
T 3fp2_A          373 KFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLT  452 (537)
T ss_dssp             HCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHH
T ss_pred             hCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHH
Confidence                  467888888999999999999999876432     111222244445566677          89999977444


Q ss_pred             HHHHHHHCCCCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHh
Q 036107          393 LMREMLSKGIVPQESTHKMLAEELEKKSLGNAKERIDELLTHAT  436 (441)
Q Consensus       393 ~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~  436 (441)
                         +..+. -+.+...+..+...+.+.|++++|.+.++...+..
T Consensus       453 ---~a~~~-~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~  492 (537)
T 3fp2_A          453 ---KACEL-DPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILA  492 (537)
T ss_dssp             ---HHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             ---HHHHh-CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence               43332 23456789999999999999999999999876654

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.62  E-value=6.3e-14  Score=131.38  Aligned_cols=257  Identities=7%  Similarity=-0.093  Sum_probs=197.1

Q ss_pred             HHhcCCChHHHHHHHhhhhhHhhhhcCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHhcCCCccHHHHHHHHhhcC
Q 036107           98 LRKRYPSPDKVVEALKCFCFTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLD  177 (441)
Q Consensus        98 l~~~~~~~g~~~~A~~~~~~~~~~~~~g~~p~~~~y~~li~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~  177 (441)
                      +...+.+.|++++|++.|+.....    .+.+..+|..+...+.+.|++++|.+.|++..+..+.              +
T Consensus        71 ~~~~~~~~g~~~~A~~~~~~al~~----~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~--------------~  132 (365)
T 4eqf_A           71 EGLKRLKEGDLPVTILFMEAAILQ----DPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPN--------------N  132 (365)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--------------C
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHh----CcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC--------------C
Confidence            445666778889999888644332    1236789999999999999999999999999886522              6


Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCC----------cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC-CC
Q 036107          178 TRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISL----------SSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFS-PD  246 (441)
Q Consensus       178 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~----------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~-p~  246 (441)
                      ..++..+...+.+.|++++|.+.|+++....+.          ....+..+...+.+.|++++|.+.|+++.+.... ++
T Consensus       133 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~  212 (365)
T 4eqf_A          133 LKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMID  212 (365)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCC
T ss_pred             HHHHHHHHHHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccC
Confidence            788999999999999999999999987331111          1233445688899999999999999999875321 15


Q ss_pred             HhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHH
Q 036107          247 GVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFI  326 (441)
Q Consensus       247 ~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~  326 (441)
                      ..+|..+...+.+.|++++|...|++..+.. +.+..+|..+..+|.+.|++++|...|++..+..  |+..        
T Consensus       213 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~--------  281 (365)
T 4eqf_A          213 PDLQTGLGVLFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQ--PGFI--------  281 (365)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCH--------
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCch--------
Confidence            7899999999999999999999999998864 3368899999999999999999999999998753  3321        


Q ss_pred             HHhcCccchHHHHHHHHHhcCChhHHHHHHHHHHHcC---CC--------CCHHHHHHHHHHHHhcCChhhHHHH
Q 036107          327 LSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDS---CK--------PDCETHARSLKMCCHKKRMKDGMLV  390 (441)
Q Consensus       327 ~~~~g~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g---~~--------p~~~t~~~li~~~~~~g~~~~a~~~  390 (441)
                             .+|..+...|...|++++|...|++..+..   ..        .+...|..+-.++...|+.+.+.++
T Consensus       282 -------~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~  349 (365)
T 4eqf_A          282 -------RSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAA  349 (365)
T ss_dssp             -------HHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHH
T ss_pred             -------HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHH
Confidence                   238888889999999999999999987532   11        1367889999999999999888664

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=99.61  E-value=2e-13  Score=127.77  Aligned_cols=260  Identities=8%  Similarity=-0.049  Sum_probs=203.4

Q ss_pred             HHHhcCCChHHHHHHHhhhhhHhhhhcCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHhcCCCccHHHHHHHHhhc
Q 036107           97 ILRKRYPSPDKVVEALKCFCFTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRL  176 (441)
Q Consensus        97 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~g~~p~~~~y~~li~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~  176 (441)
                      .+...+.+.|++++|+..|+.....    .+.+..+|..+..++.+.|++++|.+.|+++.+..+.              
T Consensus        69 ~~~~~~~~~g~~~~A~~~~~~al~~----~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~--------------  130 (368)
T 1fch_A           69 EEGLRRLQEGDLPNAVLLFEAAVQQ----DPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPD--------------  130 (368)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHS----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--------------
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCC--------------
Confidence            3445666778889999888644332    2236788999999999999999999999999886522              


Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcHHHHHH---------------HHHHHHhcCCHHHHHHHHHHHhhC
Q 036107          177 DTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDV---------------LIHGWCKTRKSDYAQKAMKEMFQH  241 (441)
Q Consensus       177 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~---------------li~~~~~~~~~~~a~~~~~~m~~~  241 (441)
                      +..++..+...+...|++++|.+.++.+....+.+...+..               .+..+...|++++|...|+++.+.
T Consensus       131 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~  210 (368)
T 1fch_A          131 NQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRL  210 (368)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHh
Confidence            67889999999999999999999999884433333333321               244444889999999999999874


Q ss_pred             CCC-CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHH
Q 036107          242 GFS-PDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFY  320 (441)
Q Consensus       242 g~~-p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~  320 (441)
                      ... ++..++..+...+.+.|++++|...|++..+.. +.+..+|..+...+.+.|++++|...|+++.+.. +.+..  
T Consensus       211 ~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~--  286 (368)
T 1fch_A          211 DPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQ-PGYIR--  286 (368)
T ss_dssp             STTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHH--
T ss_pred             CcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHH--
Confidence            321 147889999999999999999999999998763 3367899999999999999999999999998753 12232  


Q ss_pred             HHHHHHHHhcCccchHHHHHHHHHhcCChhHHHHHHHHHHHcCCC---C-------CHHHHHHHHHHHHhcCChhhHHHH
Q 036107          321 SSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCK---P-------DCETHARSLKMCCHKKRMKDGMLV  390 (441)
Q Consensus       321 ~~li~~~~~~g~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~---p-------~~~t~~~li~~~~~~g~~~~a~~~  390 (441)
                                    .|..+...|.+.|++++|...|++..+..-.   |       ...+|..+..++...|+.++|..+
T Consensus       287 --------------~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~  352 (368)
T 1fch_A          287 --------------SRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAA  352 (368)
T ss_dssp             --------------HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHH
T ss_pred             --------------HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHh
Confidence                          3888888999999999999999998753211   1       267899999999999999999875


Q ss_pred             HH
Q 036107          391 LN  392 (441)
Q Consensus       391 ~~  392 (441)
                      ++
T Consensus       353 ~~  354 (368)
T 1fch_A          353 DA  354 (368)
T ss_dssp             HT
T ss_pred             HH
Confidence            43

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=99.61  E-value=1.1e-12  Score=118.99  Aligned_cols=258  Identities=14%  Similarity=0.073  Sum_probs=197.7

Q ss_pred             HHHHHcCCChhHHHHHHHHHHHhcCCCccHHHHHHHHhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcHHHHH
Q 036107          137 VEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFD  216 (441)
Q Consensus       137 i~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~  216 (441)
                      |+.....|++..|+..++......   |.          ........+..+|...|+++.|+..++.   ..+|+..++.
T Consensus         6 ~~~~~~~g~y~~ai~~~~~~~~~~---p~----------~~~e~~~~l~r~yi~~g~~~~al~~~~~---~~~~~~~a~~   69 (291)
T 3mkr_A            6 VKNAFYIGSYQQCINEAQRVKPSS---PE----------RDVERDVFLYRAYLAQRKYGVVLDEIKP---SSAPELQAVR   69 (291)
T ss_dssp             HHHHHHTTCHHHHHHHHHHSCCCS---HH----------HHHHHHHHHHHHHHHTTCHHHHHHHSCT---TSCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhcccCC---ch----------hhHHHHHHHHHHHHHCCCHHHHHHHhcc---cCChhHHHHH
Confidence            344556799999999887754322   10          0134556678899999999999976644   3567888899


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHhhCCCCCC-HhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 036107          217 VLIHGWCKTRKSDYAQKAMKEMFQHGFSPD-GVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKA  295 (441)
Q Consensus       217 ~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~  295 (441)
                      .+...+...++.++|.+.++++...+..|+ ...+..+-..+.+.|++++|++.+++      +.+...+..+...+.+.
T Consensus        70 ~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~  143 (291)
T 3mkr_A           70 MFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKL  143 (291)
T ss_dssp             HHHHHHHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHT
T ss_pred             HHHHHHcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHC
Confidence            999999999999999999999988776565 45566666889999999999999998      46788999999999999


Q ss_pred             CCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCccchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHH
Q 036107          296 KQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSL  375 (441)
Q Consensus       296 ~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li  375 (441)
                      |++++|.+.|+.+.+..  |+... ..+            ....+..+...|++++|+.+|+++.+. ...+...++.+.
T Consensus       144 g~~~~A~~~l~~~~~~~--p~~~~-~~l------------~~a~~~l~~~~~~~~eA~~~~~~~l~~-~p~~~~~~~~la  207 (291)
T 3mkr_A          144 DRLDLARKELKKMQDQD--EDATL-TQL------------ATAWVSLAAGGEKLQDAYYIFQEMADK-CSPTLLLLNGQA  207 (291)
T ss_dssp             TCHHHHHHHHHHHHHHC--TTCHH-HHH------------HHHHHHHHHCTTHHHHHHHHHHHHHHH-SCCCHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHhhC--cCcHH-HHH------------HHHHHHHHhCchHHHHHHHHHHHHHHh-CCCcHHHHHHHH
Confidence            99999999999998864  44321 111            122333344568999999999999876 356778899999


Q ss_pred             HHHHhcCChhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCccH-HHHHHHHHHHHh
Q 036107          376 KMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEKKSLGNA-KERIDELLTHAT  436 (441)
Q Consensus       376 ~~~~~~g~~~~a~~~~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~-a~~~~~~m~~~~  436 (441)
                      .++.+.|++++|...   +++.... -+-+..++..+...+...|+.++ +.++++.+.+..
T Consensus       208 ~~~~~~g~~~eA~~~---l~~al~~-~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~  265 (291)
T 3mkr_A          208 ACHMAQGRWEAAEGV---LQEALDK-DSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAH  265 (291)
T ss_dssp             HHHHHTTCHHHHHHH---HHHHHHH-CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC
T ss_pred             HHHHHcCCHHHHHHH---HHHHHHh-CCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC
Confidence            999999999999884   4444332 13367789999999999999976 578888776554

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.59  E-value=1.8e-13  Score=125.75  Aligned_cols=255  Identities=11%  Similarity=-0.005  Sum_probs=197.6

Q ss_pred             cCCChHHHHHHHhhhhhHhhhhcCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHhcCCCccHHHHHHHHhhcCHHH
Q 036107          101 RYPSPDKVVEALKCFCFTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRA  180 (441)
Q Consensus       101 ~~~~~g~~~~A~~~~~~~~~~~~~g~~p~~~~y~~li~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~  180 (441)
                      .+.+.|++++|+..|+.....    .+.+...|..+...+...|++++|.+.++++.+..+.              +..+
T Consensus        30 ~~~~~~~~~~A~~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~--------------~~~~   91 (327)
T 3cv0_A           30 SMLKLANLAEAALAFEAVCQA----APEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK--------------DIAV   91 (327)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--------------CHHH
T ss_pred             HHHHhccHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcC--------------CHHH
Confidence            344556777777777543322    1226778889999999999999999999999886522              6778


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcHHHHHHH--------------HH-HHHhcCCHHHHHHHHHHHhhCCCCC
Q 036107          181 MSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVL--------------IH-GWCKTRKSDYAQKAMKEMFQHGFSP  245 (441)
Q Consensus       181 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l--------------i~-~~~~~~~~~~a~~~~~~m~~~g~~p  245 (441)
                      +..+...+...|++++|.+.++......+.+...+..+              .. .+...|++++|.+.++++.+.. +.
T Consensus        92 ~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~  170 (327)
T 3cv0_A           92 HAALAVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PN  170 (327)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TT
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CC
Confidence            88899999999999999999998854333333334333              22 3777889999999999998753 23


Q ss_pred             CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHH
Q 036107          246 DGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIF  325 (441)
Q Consensus       246 ~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~  325 (441)
                      +..++..+...+.+.|++++|...+++..+.. +.+..++..+...+...|++++|...|++..+... .+..       
T Consensus       171 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~-------  241 (327)
T 3cv0_A          171 DAQLHASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRALDINP-GYVR-------  241 (327)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHH-------
T ss_pred             CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCHH-------
Confidence            67889999999999999999999999998764 33678899999999999999999999999887531 2232       


Q ss_pred             HHHhcCccchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC-----------CHHHHHHHHHHHHhcCChhhHHHHHH
Q 036107          326 ILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKP-----------DCETHARSLKMCCHKKRMKDGMLVLN  392 (441)
Q Consensus       326 ~~~~~g~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-----------~~~t~~~li~~~~~~g~~~~a~~~~~  392 (441)
                               .|..+...|...|++++|.+.+++..+..-..           +..++..+..++.+.|+.++|..+++
T Consensus       242 ---------~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~  310 (327)
T 3cv0_A          242 ---------VMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYA  310 (327)
T ss_dssp             ---------HHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTT
T ss_pred             ---------HHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence                     37888888999999999999999987543221           46788899999999999999977544

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=99.58  E-value=1.3e-12  Score=118.44  Aligned_cols=269  Identities=12%  Similarity=0.077  Sum_probs=181.7

Q ss_pred             hhhhchhhHHHHHhhhcCchhhHHHHHHHHHhcCCChHHHHHHHhhhhhHhhhhcCCCCCCHHHHHHHHHHHHcCCChhH
Q 036107           69 SLKLNEQSRISSHALSEDHETDVDKVSEILRKRYPSPDKVVEALKCFCFTWAKTQTGYMHTPETYNAMVEALGKSKKFGL  148 (441)
Q Consensus        69 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~g~~p~~~~y~~li~~~~~~~~~~~  148 (441)
                      .|+.+.+................ .....+...|...|+++.|+..++.       .-.|+..++..+...+...++.++
T Consensus        12 ~g~y~~ai~~~~~~~~~~p~~~~-e~~~~l~r~yi~~g~~~~al~~~~~-------~~~~~~~a~~~la~~~~~~~~~~~   83 (291)
T 3mkr_A           12 IGSYQQCINEAQRVKPSSPERDV-ERDVFLYRAYLAQRKYGVVLDEIKP-------SSAPELQAVRMFAEYLASHSRRDA   83 (291)
T ss_dssp             TTCHHHHHHHHHHSCCCSHHHHH-HHHHHHHHHHHHTTCHHHHHHHSCT-------TSCHHHHHHHHHHHHHHCSTTHHH
T ss_pred             HHHHHHHHHHHHhcccCCchhhH-HHHHHHHHHHHHCCCHHHHHHHhcc-------cCChhHHHHHHHHHHHcCCCcHHH
Confidence            34455555544333332222211 2334456777788888888877631       234567788888888888888999


Q ss_pred             HHHHHHHHHHhcCCCccHHHHHHHHhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcHHHHHHHHHHHHhcCCH
Q 036107          149 MWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKS  228 (441)
Q Consensus       149 a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~  228 (441)
                      |++.++++...+ ..|.           +...+..+-..+...|++++|++.+++     +.+...+..+...|.+.|++
T Consensus        84 A~~~l~~ll~~~-~~P~-----------~~~~~~~la~~~~~~g~~~~Al~~l~~-----~~~~~~~~~l~~~~~~~g~~  146 (291)
T 3mkr_A           84 IVAELDREMSRS-VDVT-----------NTTFLLMAASIYFYDQNPDAALRTLHQ-----GDSLECMAMTVQILLKLDRL  146 (291)
T ss_dssp             HHHHHHHHHHSC-CCCS-----------CHHHHHHHHHHHHHTTCHHHHHHHHTT-----CCSHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHHhcc-cCCC-----------CHHHHHHHHHHHHHCCCHHHHHHHHhC-----CCCHHHHHHHHHHHHHCCCH
Confidence            999998887643 1222           556677777888888999999988877     46777888888888999999


Q ss_pred             HHHHHHHHHHhhCCCCCCHhhH---HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 036107          229 DYAQKAMKEMFQHGFSPDGVSY---TCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVY  305 (441)
Q Consensus       229 ~~a~~~~~~m~~~g~~p~~~~~---~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~  305 (441)
                      ++|.+.|+++.+.  .|+....   ...+..+...|++++|..+|+++.+. .+.+...++.+..++.+.|++++|...|
T Consensus       147 ~~A~~~l~~~~~~--~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~-~p~~~~~~~~la~~~~~~g~~~eA~~~l  223 (291)
T 3mkr_A          147 DLARKELKKMQDQ--DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK-CSPTLLLLNGQAACHMAQGRWEAAEGVL  223 (291)
T ss_dssp             HHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH-SCCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHhh--CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            9999999988875  3553211   12223334458889999999988876 4457888888888889999999999999


Q ss_pred             HHHhhCCCCCCHHHHHHHHHHHHhcCccchHHHHHHHHHhcCChhH-HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCh
Q 036107          306 EKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGN-ALKLRQKIEEDSCKPDCETHARSLKMCCHKKRM  384 (441)
Q Consensus       306 ~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~~~li~~~~~~g~~~~-a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~  384 (441)
                      ++..+.. +-+..+                +..++..+...|+.++ +.++++++.+.  .|+....   .+...+.+.+
T Consensus       224 ~~al~~~-p~~~~~----------------l~~l~~~~~~~g~~~eaa~~~~~~~~~~--~P~~~~~---~d~~~~~~~f  281 (291)
T 3mkr_A          224 QEALDKD-SGHPET----------------LINLVVLSQHLGKPPEVTNRYLSQLKDA--HRSHPFI---KEYRAKENDF  281 (291)
T ss_dssp             HHHHHHC-TTCHHH----------------HHHHHHHHHHTTCCHHHHHHHHHHHHHH--CTTCHHH---HHHHHHHHHH
T ss_pred             HHHHHhC-CCCHHH----------------HHHHHHHHHHcCCCHHHHHHHHHHHHHh--CCCChHH---HHHHHHHHHH
Confidence            8877643 123333                6677777777887765 56788877754  5554322   3334444455


Q ss_pred             hhH
Q 036107          385 KDG  387 (441)
Q Consensus       385 ~~a  387 (441)
                      +++
T Consensus       282 d~~  284 (291)
T 3mkr_A          282 DRL  284 (291)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            554

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=99.58  E-value=2.1e-13  Score=127.33  Aligned_cols=155  Identities=10%  Similarity=0.049  Sum_probs=68.7

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHh
Q 036107          180 AMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCR  259 (441)
Q Consensus       180 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~  259 (441)
                      +|..+...|...|++++|...|+.+.        .|..+..++.+.|++++|.+.+.++      .++.+|..++.+|+.
T Consensus       124 a~~~IGd~~~~~g~yeeA~~~Y~~a~--------n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~  189 (449)
T 1b89_A          124 HIQQVGDRCYDEKMYDAAKLLYNNVS--------NFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVD  189 (449)
T ss_dssp             -------------CTTTHHHHHHHTT--------CHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHhh--------hHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHH
Confidence            44445555555555555555554442        2444555555555555555555444      144445555555555


Q ss_pred             cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCcc------
Q 036107          260 EKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRF------  333 (441)
Q Consensus       260 ~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~------  333 (441)
                      .|+++.|......+     ..++.-...++..|.+.|++++|..+++...... +-....|+-+-.+|++-..-      
T Consensus       190 ~~ef~lA~~~~l~L-----~~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl  263 (449)
T 1b89_A          190 GKEFRLAQMCGLHI-----VVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHL  263 (449)
T ss_dssp             TTCHHHHHHTTTTT-----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             cCcHHHHHHHHHHH-----HhCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence            55555553322221     1122222234444555555555554444444322 22233333333333332211      


Q ss_pred             -------------------chHHHHHHHHHhcCChhHHHH
Q 036107          334 -------------------LIYNTMISSACVRSEEGNALK  354 (441)
Q Consensus       334 -------------------~~~~~li~~~~~~g~~~~a~~  354 (441)
                                         ..|.-+.-.|...++++.|..
T Consensus       264 ~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~  303 (449)
T 1b89_A          264 ELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII  303 (449)
T ss_dssp             HHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHH
Confidence                               568999999999999998866

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=99.57  E-value=1.2e-12  Score=129.08  Aligned_cols=299  Identities=10%  Similarity=0.037  Sum_probs=212.3

Q ss_pred             HHHHHHHhcCCChHHHHHHHhhhhhHhhhhcCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHhcCCCccHHHHHHH
Q 036107           93 KVSEILRKRYPSPDKVVEALKCFCFTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTV  172 (441)
Q Consensus        93 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~g~~p~~~~y~~li~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~~  172 (441)
                      ..+..+...+.+.|++++|++.|+.....    .+.+...|..+..++.+.|++++|.+.|+++.+..+.          
T Consensus        26 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~----~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~----------   91 (537)
T 3fp2_A           26 VQLKNRGNHFFTAKNFNEAIKYYQYAIEL----DPNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPD----------   91 (537)
T ss_dssp             HHHHHHHHHHHHTTCCC-CHHHHHHHHHH----CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT----------
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHhh----CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc----------
Confidence            44555667888889999999999654433    1236788999999999999999999999998886532          


Q ss_pred             HhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcHH---------------------------------------
Q 036107          173 MRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQ---------------------------------------  213 (441)
Q Consensus       173 ~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~---------------------------------------  213 (441)
                          +..++..+...+...|++++|.+.|+.+..  .|+..                                       
T Consensus        92 ----~~~~~~~la~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~  165 (537)
T 3fp2_A           92 ----HSKALLRRASANESLGNFTDAMFDLSVLSL--NGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNT  165 (537)
T ss_dssp             ----CHHHHHHHHHHHHHHTCHHHHHHHHHHHC-------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHH
T ss_pred             ----hHHHHHHHHHHHHHcCCHHHHHHHHHHHhc--CCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHh
Confidence                678889999999999999999999975532  12111                                       


Q ss_pred             ------------------------------HHHHHHHHHHhc--------CCHHHHHHHHHHHhhCCCCCC--------H
Q 036107          214 ------------------------------IFDVLIHGWCKT--------RKSDYAQKAMKEMFQHGFSPD--------G  247 (441)
Q Consensus       214 ------------------------------~~~~li~~~~~~--------~~~~~a~~~~~~m~~~g~~p~--------~  247 (441)
                                                    ....+...+...        |++++|..+|+++.+.  .|+        .
T Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~--~p~~~~~~~~~~  243 (537)
T 3fp2_A          166 SLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSA--NTVDDPLRENAA  243 (537)
T ss_dssp             HHHHHHHTSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC----CCCHHHHHHHH
T ss_pred             HHHHHHHhcChHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHH--CCCcchhhHHHH
Confidence                                          011111111111        3567777777777654  233        2


Q ss_pred             hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHH
Q 036107          248 VSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFIL  327 (441)
Q Consensus       248 ~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~  327 (441)
                      .+|..+-..+...|++++|...|++..+..  |+...+..+...+...|++++|...|++..+... .+.          
T Consensus       244 ~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~----------  310 (537)
T 3fp2_A          244 LALCYTGIFHFLKNNLLDAQVLLQESINLH--PTPNSYIFLALTLADKENSQEFFKFFQKAVDLNP-EYP----------  310 (537)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCT-TCH----------
T ss_pred             HHHHHHHHHHHhcccHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCC-CCH----------
Confidence            245566666777778888888888777653  4466777777777788888888888887766431 122          


Q ss_pred             HhcCccchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCCCCHH
Q 036107          328 SKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQES  407 (441)
Q Consensus       328 ~~~g~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~~~~m~~~~~~p~~~  407 (441)
                            .+|..+...|...|++++|++.+++..+.. .-+...+..+...+...|++++|.+.++   +..+. .+.+..
T Consensus       311 ------~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~---~~~~~-~~~~~~  379 (537)
T 3fp2_A          311 ------PTYYHRGQMYFILQDYKNAKEDFQKAQSLN-PENVYPYIQLACLLYKQGKFTESEAFFN---ETKLK-FPTLPE  379 (537)
T ss_dssp             ------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHH---HHHHH-CTTCTH
T ss_pred             ------HHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHH---HHHHh-CCCChH
Confidence                  348888888999999999999999998753 2245678889999999999999987544   44332 233466


Q ss_pred             HHHHHHHHHHhcCCccHHHHHHHHHHHHhh
Q 036107          408 THKMLAEELEKKSLGNAKERIDELLTHATE  437 (441)
Q Consensus       408 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~  437 (441)
                      .+..+...+.+.|++++|.+.++...+...
T Consensus       380 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~  409 (537)
T 3fp2_A          380 VPTFFAEILTDRGDFDTAIKQYDIAKRLEE  409 (537)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHcCC
Confidence            888999999999999999999999766543

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.53  E-value=1.3e-11  Score=108.95  Aligned_cols=209  Identities=10%  Similarity=-0.008  Sum_probs=168.6

Q ss_pred             HHHHHHHHHHHHcCCChhHHHHHHHHHHHhcCCCccHHHHHHHHhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCC
Q 036107          130 PETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCIS  209 (441)
Q Consensus       130 ~~~y~~li~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~  209 (441)
                      ...|..+...+...|++++|.+.|+++....+.              +..++..+...+...|++++|.+.+++.....+
T Consensus        37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~--------------~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~  102 (252)
T 2ho1_A           37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPS--------------SADAHAALAVVFQTEMEPKLADEEYRKALASDS  102 (252)
T ss_dssp             HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTT--------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC--------------hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence            467888888999999999999999998885422              677888899999999999999999998855445


Q ss_pred             CcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC-CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 036107          210 LSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSP-DGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIV  288 (441)
Q Consensus       210 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~l  288 (441)
                      .+...+..+...|...|++++|.++|+++...+..| +...+..+...+...|++++|.+.|++..+... .+...+..+
T Consensus       103 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l  181 (252)
T 2ho1_A          103 RNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNR-NQPSVALEM  181 (252)
T ss_dssp             TCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-CCHHHHHHH
T ss_pred             CcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCc-ccHHHHHHH
Confidence            577888999999999999999999999998743445 456788888899999999999999999877642 357888889


Q ss_pred             HHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCccchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCH
Q 036107          289 MHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDC  368 (441)
Q Consensus       289 l~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~  368 (441)
                      ...+.+.|++++|...++...+... .+...                +..+...+...|+.++|.+.++++.+.  .|+.
T Consensus       182 a~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~----------------~~~~~~~~~~~g~~~~A~~~~~~~~~~--~p~~  242 (252)
T 2ho1_A          182 ADLLYKEREYVPARQYYDLFAQGGG-QNARS----------------LLLGIRLAKVFEDRDTAASYGLQLKRL--YPGS  242 (252)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHTTSC-CCHHH----------------HHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTS
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCc-CcHHH----------------HHHHHHHHHHccCHHHHHHHHHHHHHH--CCCC
Confidence            9999999999999999999887532 23322                677777888888899999999988765  4554


Q ss_pred             HHHH
Q 036107          369 ETHA  372 (441)
Q Consensus       369 ~t~~  372 (441)
                      ..+.
T Consensus       243 ~~~~  246 (252)
T 2ho1_A          243 LEYQ  246 (252)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            4443

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.52  E-value=1.5e-11  Score=106.18  Aligned_cols=210  Identities=10%  Similarity=-0.030  Sum_probs=137.4

Q ss_pred             CHHHHHHHHHHHHcCCChhHHHHHHHHHHHhcCCCccHHHHHHHHhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCC
Q 036107          129 TPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCI  208 (441)
Q Consensus       129 ~~~~y~~li~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~  208 (441)
                      +...|..+...+...|++++|.+.|++..+..+.              +...+..+...+...|++++|.+.+++.....
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~--------------~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~   72 (225)
T 2vq2_A            7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSDPK--------------NELAWLVRAEIYQYLKVNDKAQESFRQALSIK   72 (225)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCcc--------------chHHHHHHHHHHHHcCChHHHHHHHHHHHHhC
Confidence            3556777777777788888888888777765422              45667777777777788888877777764434


Q ss_pred             CCcHHHHHHHHHHHHhc-CCHHHHHHHHHHHhhCCCCCC-HhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 036107          209 SLSSQIFDVLIHGWCKT-RKSDYAQKAMKEMFQHGFSPD-GVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCT  286 (441)
Q Consensus       209 ~~~~~~~~~li~~~~~~-~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~  286 (441)
                      +.+..++..+...+... |++++|.+.|+++.+.+..|+ ...+..+...+...|++++|...++++.+... .+...+.
T Consensus        73 ~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~  151 (225)
T 2vq2_A           73 PDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQP-QFPPAFK  151 (225)
T ss_dssp             TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHH
T ss_pred             CCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCchHHH
Confidence            45666677777777777 777777777777776322232 45666777777777777777777777766432 2466677


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCccchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC
Q 036107          287 IVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKP  366 (441)
Q Consensus       287 ~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p  366 (441)
                      .+...+.+.|++++|...+++..+.....+...                +..+...+...|+.+.|..+++.+.+.  .|
T Consensus       152 ~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~a~~~~~~~~~~--~p  213 (225)
T 2vq2_A          152 ELARTKMLAGQLGDADYYFKKYQSRVEVLQADD----------------LLLGWKIAKALGNAQAAYEYEAQLQAN--FP  213 (225)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHH----------------HHHHHHHHHHTTCHHHHHHHHHHHHHH--CT
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHH----------------HHHHHHHHHhcCcHHHHHHHHHHHHHh--CC
Confidence            777777777777777777777665422122322                555555666666777777777666543  34


Q ss_pred             CHHHH
Q 036107          367 DCETH  371 (441)
Q Consensus       367 ~~~t~  371 (441)
                      +...+
T Consensus       214 ~~~~~  218 (225)
T 2vq2_A          214 YSEEL  218 (225)
T ss_dssp             TCHHH
T ss_pred             CCHHH
Confidence            44433

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.46  E-value=3.9e-12  Score=113.77  Aligned_cols=254  Identities=8%  Similarity=-0.080  Sum_probs=187.2

Q ss_pred             hcCCChHHHHHHHhhhhhHhhhhcCCCCC-CHHHHHHHHHHHHcCCChhHHHHHHHHHHHhcCCCccHHHHHHHHhhcCH
Q 036107          100 KRYPSPDKVVEALKCFCFTWAKTQTGYMH-TPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDT  178 (441)
Q Consensus       100 ~~~~~~g~~~~A~~~~~~~~~~~~~g~~p-~~~~y~~li~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~  178 (441)
                      ......|++++|++.|+...... ..-.| +..+|..+...+...|++++|.+.|++..+..+.              +.
T Consensus        13 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~--------------~~   77 (275)
T 1xnf_A           13 VPLQPTLQQEVILARMEQILASR-ALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPD--------------MP   77 (275)
T ss_dssp             CCCCCCHHHHHHHHHHHHHHTSS-CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC--------------CH
T ss_pred             eccCccchHHHHHHHHHHHHhcc-cccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCC--------------cH
Confidence            45677799999999986443321 01111 4668899999999999999999999999886532              67


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHH
Q 036107          179 RAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYC  258 (441)
Q Consensus       179 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~  258 (441)
                      .++..+...+...|++++|.+.|++.....+.+...+..+...|.+.|++++|.+.|+++.+.  .|+.......+..+.
T Consensus        78 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~  155 (275)
T 1xnf_A           78 EVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAE  155 (275)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHH
Confidence            888999999999999999999999885544556788999999999999999999999999874  466555566666667


Q ss_pred             hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCccchHHH
Q 036107          259 REKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNT  338 (441)
Q Consensus       259 ~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~~~  338 (441)
                      ..|++++|...+++..... +++...+. +...+...++.++|...+....+........    ..         ..|..
T Consensus       156 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~---------~~~~~  220 (275)
T 1xnf_A          156 QKLDEKQAKEVLKQHFEKS-DKEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEH----LS---------ETNFY  220 (275)
T ss_dssp             HHHCHHHHHHHHHHHHHHS-CCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHH----HH---------HHHHH
T ss_pred             HhcCHHHHHHHHHHHHhcC-CcchHHHH-HHHHHHHhcCHHHHHHHHHHHhccccccccc----cc---------HHHHH
Confidence            7899999999998876653 23434443 6777788888899999998887643211000    00         23788


Q ss_pred             HHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHH
Q 036107          339 MISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGML  389 (441)
Q Consensus       339 li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~  389 (441)
                      +...|...|++++|...|++..+.  .|+.  +.....++...|++++|.+
T Consensus       221 la~~~~~~g~~~~A~~~~~~al~~--~p~~--~~~~~~~~~~l~~~~~a~~  267 (275)
T 1xnf_A          221 LGKYYLSLGDLDSATALFKLAVAN--NVHN--FVEHRYALLELSLLGQDQD  267 (275)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHTT--CCTT--CHHHHHHHHHHHHHHHC--
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHhC--Cchh--HHHHHHHHHHHHHHHhhHH
Confidence            888899999999999999998864  4533  2223445667777777755

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.46  E-value=5.6e-11  Score=104.89  Aligned_cols=224  Identities=11%  Similarity=0.025  Sum_probs=174.2

Q ss_pred             HHHHHHHHHHHHcCCChhHHHHHHHHHHHhcCCCccHHHHHHHHhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhh---
Q 036107          130 PETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKD---  206 (441)
Q Consensus       130 ~~~y~~li~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~---  206 (441)
                      ...|..+-..+...|++++|.+.|++..+.. .              +..++..+...+...|++++|.+.++....   
T Consensus         5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~-~--------------~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~   69 (258)
T 3uq3_A            5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH-K--------------DITYLNNRAAAEYEKGEYETAISTLNDAVEQGR   69 (258)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-C--------------CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh-c--------------cHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCc
Confidence            4578888888999999999999999988754 1              667888889999999999999999988632   


Q ss_pred             CCCCc----HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH
Q 036107          207 CISLS----SQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSV  282 (441)
Q Consensus       207 ~~~~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~  282 (441)
                      ...++    ..++..+...|.+.|++++|.+.|++..+.  .|+.       ..+.+.|++++|...++++.+.. +.+.
T Consensus        70 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~-------~~~~~~~~~~~a~~~~~~~~~~~-~~~~  139 (258)
T 3uq3_A           70 EMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTE--HRTA-------DILTKLRNAEKELKKAEAEAYVN-PEKA  139 (258)
T ss_dssp             HTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCH-------HHHHHHHHHHHHHHHHHHHHHCC-HHHH
T ss_pred             ccccchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhc--Cchh-------HHHHHHhHHHHHHHHHHHHHHcC-cchH
Confidence            22222    577888889999999999999999998873  3553       34666788999999999987753 2246


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCccchHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 036107          283 ITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEED  362 (441)
Q Consensus       283 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~  362 (441)
                      ..+..+...+...|++++|...|++..+... .+..                .|..+...|...|++++|++.+++..+.
T Consensus       140 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~----------------~~~~l~~~~~~~~~~~~A~~~~~~al~~  202 (258)
T 3uq3_A          140 EEARLEGKEYFTKSDWPNAVKAYTEMIKRAP-EDAR----------------GYSNRAAALAKLMSFPEAIADCNKAIEK  202 (258)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHH----------------HHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCc-ccHH----------------HHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence            6788888889999999999999999887532 1232                3777888888889999999999988765


Q ss_pred             CCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHH
Q 036107          363 SCKPDCETHARSLKMCCHKKRMKDGMLVLNLMRE  396 (441)
Q Consensus       363 g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~~~~  396 (441)
                      . ..+...+..+...+.+.|++++|.+.++...+
T Consensus       203 ~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~  235 (258)
T 3uq3_A          203 D-PNFVRAYIRKATAQIAVKEYASALETLDAART  235 (258)
T ss_dssp             C-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             C-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence            3 33467788888889999999999776554444

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.46  E-value=3.8e-11  Score=103.61  Aligned_cols=201  Identities=8%  Similarity=-0.034  Sum_probs=154.1

Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHH
Q 036107          177 DTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEH  256 (441)
Q Consensus       177 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~  256 (441)
                      +...+..+...+...|++++|.+.|+......+.+...+..+...|...|++++|.+.|++..+.. +.+..++..+...
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~   85 (225)
T 2vq2_A            7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWF   85 (225)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHH
Confidence            466778888888899999999999988755445567788888888999999999999998887642 2356788888888


Q ss_pred             HHhc-CCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCccc
Q 036107          257 YCRE-KDFRKVDYTLKEMQEKGCKPS-VITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFL  334 (441)
Q Consensus       257 ~~~~-g~~~~a~~l~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~  334 (441)
                      +... |++++|...++++.+.+..|+ ...+..+..++.+.|++++|...|+++.+... .+..                
T Consensus        86 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~----------------  148 (225)
T 2vq2_A           86 LCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQP-QFPP----------------  148 (225)
T ss_dssp             HHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHH----------------
T ss_pred             HHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCch----------------
Confidence            8899 999999999998887433333 56788888888999999999999988877431 1232                


Q ss_pred             hHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHH
Q 036107          335 IYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMR  395 (441)
Q Consensus       335 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~~~  395 (441)
                      .+..+...+...|++++|.+.+++..+..-..+...+..+...+...|+.+.+..+++.+.
T Consensus       149 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~  209 (225)
T 2vq2_A          149 AFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQ  209 (225)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence            2777778888888889999999888765322466667777777788888888877555443

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.45  E-value=1.2e-11  Score=106.82  Aligned_cols=199  Identities=13%  Similarity=0.007  Sum_probs=156.4

Q ss_pred             CCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHhcCCCccHHHHHHHHhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 036107          127 MHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKD  206 (441)
Q Consensus       127 ~p~~~~y~~li~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~  206 (441)
                      +++...|..+-..+.+.|++++|...|++..+..|.              +...+..+-..+.+.|++++|+..|++.-.
T Consensus         2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~--------------~~~a~~~lg~~~~~~g~~~~A~~~~~~al~   67 (217)
T 2pl2_A            2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQ--------------DPEALYWLARTQLKLGLVNPALENGKTLVA   67 (217)
T ss_dssp             --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSS--------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            356778888999999999999999999999885533              778899999999999999999999998855


Q ss_pred             CCCCcHHHHHHHHHHHHhc-----------CCHHHHHHHHHHHhhCCCCC-CHhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 036107          207 CISLSSQIFDVLIHGWCKT-----------RKSDYAQKAMKEMFQHGFSP-DGVSYTCFIEHYCREKDFRKVDYTLKEMQ  274 (441)
Q Consensus       207 ~~~~~~~~~~~li~~~~~~-----------~~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~a~~l~~~m~  274 (441)
                      ..+.+...+..+-..+.+.           |++++|...|++..+.  .| +...|..+-..+...|++++|...|++..
T Consensus        68 ~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al  145 (217)
T 2pl2_A           68 RTPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERV--NPRYAPLHLQRGLVYALLGERDKAEASLKQAL  145 (217)
T ss_dssp             HCTTCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             hCCCcHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCChHHHHHHHHHHH
Confidence            4456778899999999999           9999999999999874  34 46788888899999999999999999998


Q ss_pred             HcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCccchHHHHHHHHHhcCChhHHHH
Q 036107          275 EKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALK  354 (441)
Q Consensus       275 ~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~~~li~~~~~~g~~~~a~~  354 (441)
                      +..  .+...+..+..++...|++++|...|+...+.. +.+..                .+..+...+...|++++|++
T Consensus       146 ~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-P~~~~----------------~~~~la~~~~~~g~~~~A~~  206 (217)
T 2pl2_A          146 ALE--DTPEIRSALAELYLSMGRLDEALAQYAKALEQA-PKDLD----------------LRVRYASALLLKGKAEEAAR  206 (217)
T ss_dssp             HHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHH----------------HHHHHHHHHTC---------
T ss_pred             hcc--cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChH----------------HHHHHHHHHHHccCHHHHHH
Confidence            887  688999999999999999999999999998753 12332                37778888889999999999


Q ss_pred             HHHHHH
Q 036107          355 LRQKIE  360 (441)
Q Consensus       355 ~~~~m~  360 (441)
                      .|++..
T Consensus       207 ~~~~~~  212 (217)
T 2pl2_A          207 AAALEH  212 (217)
T ss_dssp             ------
T ss_pred             HHHHHh
Confidence            888764

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=99.44  E-value=6.6e-09  Score=101.31  Aligned_cols=326  Identities=12%  Similarity=0.049  Sum_probs=206.8

Q ss_pred             hhhhchhhHHHHHhhhcCchhhHHHHHHHHHhcCCChHHHHHHHhhhhhHhhhhcCCCCCCHHHHHHHHHHHHc----CC
Q 036107           69 SLKLNEQSRISSHALSEDHETDVDKVSEILRKRYPSPDKVVEALKCFCFTWAKTQTGYMHTPETYNAMVEALGK----SK  144 (441)
Q Consensus        69 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~g~~p~~~~y~~li~~~~~----~~  144 (441)
                      .++.+.|...+....+.|.......+..+........++.++|++.|+..-.   .|   +...+..+-..|..    .+
T Consensus        56 ~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~---~~---~~~a~~~Lg~~y~~g~g~~~  129 (490)
T 2xm6_A           56 TKDLTQAMDWFRRAAEQGYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAAL---KG---LPQAQQNLGVMYHEGNGVKV  129 (490)
T ss_dssp             CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH---TT---CHHHHHHHHHHHHHTSSSCC
T ss_pred             CcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH---CC---CHHHHHHHHHHHHcCCCCCC
Confidence            3556666666666666543322212222222222336777888877753322   22   55666666666766    67


Q ss_pred             ChhHHHHHHHHHHHhcCCCccHHHHHHHHhhcCHHHHHHHHHHHHh----cCCHHHHHHHHHHhhhCCCCcHHHHHHHHH
Q 036107          145 KFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVK----RNSVAHAYKVFLKFKDCISLSSQIFDVLIH  220 (441)
Q Consensus       145 ~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~li~  220 (441)
                      ++++|.+.|++..+.+                +...+..|-..|..    .++.++|.+.|++.-+.  .+...+..|-.
T Consensus       130 ~~~~A~~~~~~a~~~~----------------~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~--~~~~a~~~Lg~  191 (490)
T 2xm6_A          130 DKAESVKWFRLAAEQG----------------RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQ--GNVWSCNQLGY  191 (490)
T ss_dssp             CHHHHHHHHHHHHHTT----------------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHCC----------------CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHH
Confidence            7888888888777655                55666666666666    67777777777766331  24555666666


Q ss_pred             HHHh----cCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 036107          221 GWCK----TRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCR----EKDFRKVDYTLKEMQEKGCKPSVITCTIVMHAL  292 (441)
Q Consensus       221 ~~~~----~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~  292 (441)
                      .|..    .++.++|.++|++..+.|   +...+..+-..|..    .+++++|...|++..+.|   +...+..+-..|
T Consensus       192 ~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y  265 (490)
T 2xm6_A          192 MYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQFRLGYIL  265 (490)
T ss_dssp             HHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHHHHHHHH
T ss_pred             HHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHH
Confidence            6666    677777777777776653   45556666666664    667777777777766653   344555555556


Q ss_pred             Hh----cCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhc-----Ccc----------------chHHHHHHHHHhcC
Q 036107          293 EK----AKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKA-----VRF----------------LIYNTMISSACVRS  347 (441)
Q Consensus       293 ~~----~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~-----g~~----------------~~~~~li~~~~~~g  347 (441)
                      ..    .+++++|...|+...+.|   +...+..+-..|...     ++.                ..+..+-..|...|
T Consensus       266 ~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~~g  342 (490)
T 2xm6_A          266 EQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQGDATAQANLGAIYFRLG  342 (490)
T ss_dssp             HHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC
T ss_pred             HCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Confidence            55    677777777777776654   333444444444443     222                34555555665555


Q ss_pred             ---ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCChhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh--
Q 036107          348 ---EEGNALKLRQKIEEDSCKPDCETHARSLKMCCH----KKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEK--  418 (441)
Q Consensus       348 ---~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~----~g~~~~a~~~~~~~~~m~~~~~~p~~~~~~~ll~~~~~--  418 (441)
                         +.++|++.|++..+.|   +...+..+-..|..    .+++++|.+   .+++..+.|   +...+..|-..|.+  
T Consensus       343 ~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~---~~~~A~~~~---~~~a~~~Lg~~y~~g~  413 (490)
T 2xm6_A          343 SEEEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAI---WMRKAAEQG---LSAAQVQLGEIYYYGL  413 (490)
T ss_dssp             CHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHH---HHHHHHHTT---CHHHHHHHHHHHHHTS
T ss_pred             CcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHH---HHHHHHhCC---CHHHHHHHHHHHHcCC
Confidence               6788999998887764   56677777777777    788888866   555555554   46677778888877  


Q ss_pred             --cCCccHHHHHHHHHHHHh
Q 036107          419 --KSLGNAKERIDELLTHAT  436 (441)
Q Consensus       419 --~g~~~~a~~~~~~m~~~~  436 (441)
                        .++.++|.+.++......
T Consensus       414 g~~~d~~~A~~~~~~A~~~~  433 (490)
T 2xm6_A          414 GVERDYVQAWAWFDTASTND  433 (490)
T ss_dssp             SSCCCHHHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHCC
Confidence              789999999888866544

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.43  E-value=4.8e-11  Score=105.26  Aligned_cols=198  Identities=11%  Similarity=0.008  Sum_probs=135.7

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHH
Q 036107          178 TRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHY  257 (441)
Q Consensus       178 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~  257 (441)
                      ...+..+...+...|++++|.+.|++.....+.+...+..+...|.+.|++++|.+.|++..+.. +.+...+..+...+
T Consensus        37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~  115 (252)
T 2ho1_A           37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFL  115 (252)
T ss_dssp             HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHH
Confidence            45566667777778888888888877744444566677777778888888888888888776642 22566777777777


Q ss_pred             HhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCccchH
Q 036107          258 CREKDFRKVDYTLKEMQEKGCKP-SVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIY  336 (441)
Q Consensus       258 ~~~g~~~~a~~l~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~  336 (441)
                      ...|++++|.++++++.+.+..| +...+..+...+.+.|++++|.+.|++..+... .+..                .+
T Consensus       116 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~-~~~~----------------~~  178 (252)
T 2ho1_A          116 YEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNR-NQPS----------------VA  178 (252)
T ss_dssp             HHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-CCHH----------------HH
T ss_pred             HHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCc-ccHH----------------HH
Confidence            78888888888888776633334 456667777777788888888888877766431 1222                26


Q ss_pred             HHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHH
Q 036107          337 NTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLM  394 (441)
Q Consensus       337 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~~  394 (441)
                      ..+...|...|++++|...+++..+.. ..+...+..+...+...|+.++|.++++.+
T Consensus       179 ~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~  235 (252)
T 2ho1_A          179 LEMADLLYKEREYVPARQYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQL  235 (252)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence            666777777777788888887776532 344556666777777778877776644433

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.43  E-value=1.3e-10  Score=103.63  Aligned_cols=240  Identities=13%  Similarity=0.023  Sum_probs=183.1

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC--HhhHHHHHH
Q 036107          178 TRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPD--GVSYTCFIE  255 (441)
Q Consensus       178 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~--~~~~~~li~  255 (441)
                      ...+......+...|++++|+..|+......+.+...+..+...|...|++++|.+.|++..+.+-.|+  ..+|..+..
T Consensus         3 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~   82 (272)
T 3u4t_A            3 DDVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGK   82 (272)
T ss_dssp             --CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHH
Confidence            344556667888999999999999998554455666889999999999999999999999998432222  234889999


Q ss_pred             HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCccch
Q 036107          256 HYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLI  335 (441)
Q Consensus       256 ~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~  335 (441)
                      .+...|++++|...|++..+... .+..+|..+...|...|++++|...|++..+.. +.+...                
T Consensus        83 ~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~----------------  144 (272)
T 3u4t_A           83 ILMKKGQDSLAIQQYQAAVDRDT-TRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKV----------------  144 (272)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHST-TCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHH----------------
T ss_pred             HHHHcccHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHH----------------
Confidence            99999999999999999988643 256789999999999999999999999998762 223322                


Q ss_pred             HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCC---hhhHHHHHHHHHHHHHCCCCCC----HH
Q 036107          336 YNTMISSACVRSEEGNALKLRQKIEEDSCKPD-CETHARSLKMCCHKKR---MKDGMLVLNLMREMLSKGIVPQ----ES  407 (441)
Q Consensus       336 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~t~~~li~~~~~~g~---~~~a~~~~~~~~~m~~~~~~p~----~~  407 (441)
                      |..+...+...+++++|++.|++..+.  .|+ ...+..+...+...|+   +++|...++...++....-.++    ..
T Consensus       145 ~~~l~~~~~~~~~~~~A~~~~~~a~~~--~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~  222 (272)
T 3u4t_A          145 FYELGQAYYYNKEYVKADSSFVKVLEL--KPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIE  222 (272)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHH
Confidence            555552333445999999999998865  344 5677777788888888   8888876665555443222221    25


Q ss_pred             HHHHHHHHHHhcCCccHHHHHHHHHHHHhh
Q 036107          408 THKMLAEELEKKSLGNAKERIDELLTHATE  437 (441)
Q Consensus       408 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~  437 (441)
                      .|..+-..|.+.|++++|.+.++.......
T Consensus       223 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~p  252 (272)
T 3u4t_A          223 ANEYIAYYYTINRDKVKADAAWKNILALDP  252 (272)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhcCc
Confidence            788888999999999999999998876654

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.43  E-value=5.4e-11  Score=104.98  Aligned_cols=227  Identities=11%  Similarity=-0.013  Sum_probs=184.7

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCC--CCC----HhhHH
Q 036107          178 TRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGF--SPD----GVSYT  251 (441)
Q Consensus       178 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~--~p~----~~~~~  251 (441)
                      ...+..+-..+...|++++|.+.|+...... .+...+..+..+|...|++++|.+.|++..+...  .|+    ..+|.
T Consensus         5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~   83 (258)
T 3uq3_A            5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH-KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFA   83 (258)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHH
Confidence            4677888889999999999999999984433 7888999999999999999999999999876321  112    57889


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcC
Q 036107          252 CFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAV  331 (441)
Q Consensus       252 ~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g  331 (441)
                      .+...+...|++++|...|++..+..  |+.       ..+.+.|++++|...++.+....  |+..             
T Consensus        84 ~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~-------~~~~~~~~~~~a~~~~~~~~~~~--~~~~-------------  139 (258)
T 3uq3_A           84 RIGNAYHKLGDLKKTIEYYQKSLTEH--RTA-------DILTKLRNAEKELKKAEAEAYVN--PEKA-------------  139 (258)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHC--CCH-------HHHHHHHHHHHHHHHHHHHHHCC--HHHH-------------
T ss_pred             HHHHHHHHcccHHHHHHHHHHHHhcC--chh-------HHHHHHhHHHHHHHHHHHHHHcC--cchH-------------
Confidence            99999999999999999999998853  443       34667789999999999998852  3222             


Q ss_pred             ccchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCCCCHHHHHH
Q 036107          332 RFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKM  411 (441)
Q Consensus       332 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~~~~m~~~~~~p~~~~~~~  411 (441)
                        ..|..+...+...|++++|++.+++..+.. ..+..++..+...+...|++++|.+.++...+   . .+.+...|..
T Consensus       140 --~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~---~-~~~~~~~~~~  212 (258)
T 3uq3_A          140 --EEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIE---K-DPNFVRAYIR  212 (258)
T ss_dssp             --HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---H-CTTCHHHHHH
T ss_pred             --HHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHH---h-CHHHHHHHHH
Confidence              237888888999999999999999998654 34577889999999999999999875544333   2 2335778999


Q ss_pred             HHHHHHhcCCccHHHHHHHHHHHHh
Q 036107          412 LAEELEKKSLGNAKERIDELLTHAT  436 (441)
Q Consensus       412 ll~~~~~~g~~~~a~~~~~~m~~~~  436 (441)
                      +...+.+.|++++|.+.++...+..
T Consensus       213 l~~~~~~~g~~~~A~~~~~~a~~~~  237 (258)
T 3uq3_A          213 KATAQIAVKEYASALETLDAARTKD  237 (258)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhhHHHHHHHHHHHHHhC
Confidence            9999999999999999999877655

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.40  E-value=4.5e-11  Score=104.64  Aligned_cols=201  Identities=11%  Similarity=0.022  Sum_probs=122.8

Q ss_pred             CHHHHHHHHHHHHcCCChhHHHHHHHHHHHhcCCCccHHHHHHHHhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCC
Q 036107          129 TPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCI  208 (441)
Q Consensus       129 ~~~~y~~li~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~  208 (441)
                      ....|..+...+...|++++|.+.|++..+..+.              +...+..+...+.+.|++++|.+.|+......
T Consensus        22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~--------------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~   87 (243)
T 2q7f_A           22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKE--------------DAIPYINFANLLSSVNELERALAFYDKALELD   87 (243)
T ss_dssp             --------------------CCTTHHHHHTTCTT--------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcc--------------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence            4456666677777777778777777777664311              55677777777777788888877777764434


Q ss_pred             CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 036107          209 SLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIV  288 (441)
Q Consensus       209 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~l  288 (441)
                      +.+...+..+...+...|++++|.+.|++..+.. +.+...+..+...+.+.|++++|...+++..+... .+...+..+
T Consensus        88 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l  165 (243)
T 2q7f_A           88 SSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNE-NDTEARFQF  165 (243)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCT-TCHHHHHHH
T ss_pred             CcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-ccHHHHHHH
Confidence            4566677777777777777777777777776542 23556677777777777777777777777766532 256667777


Q ss_pred             HHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCccchHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 036107          289 MHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEED  362 (441)
Q Consensus       289 l~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~  362 (441)
                      ...+.+.|++++|...|++..+... .+..                +|..+...|...|++++|.+.+++..+.
T Consensus       166 ~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~----------------~~~~la~~~~~~~~~~~A~~~~~~~~~~  222 (243)
T 2q7f_A          166 GMCLANEGMLDEALSQFAAVTEQDP-GHAD----------------AFYNAGVTYAYKENREKALEMLDKAIDI  222 (243)
T ss_dssp             HHHHHHHTCCHHHHHHHHHHHHHCT-TCHH----------------HHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCc-ccHH----------------HHHHHHHHHHHccCHHHHHHHHHHHHcc
Confidence            7777777777777777777765421 1222                2666666777777777777777777653

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.39  E-value=2.7e-09  Score=95.38  Aligned_cols=218  Identities=14%  Similarity=0.058  Sum_probs=172.4

Q ss_pred             CHHHHHHHHHHHHcCCChhHHHHHHHHHHHhcCCCccHHHHHHHHhhcCHHHHHHHHHHHHh----cCCHHHHHHHHHHh
Q 036107          129 TPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVK----RNSVAHAYKVFLKF  204 (441)
Q Consensus       129 ~~~~y~~li~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~~  204 (441)
                      ++.++..+-..+...|++++|.+.|++..+.+                +..++..+-..+..    .+++++|.+.|++.
T Consensus         5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~----------------~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a   68 (273)
T 1ouv_A            5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK----------------ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKA   68 (273)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT----------------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHH
T ss_pred             ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC----------------CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHH
Confidence            56777788888888899999999999888754                66778888888888    89999999999887


Q ss_pred             hhCCCCcHHHHHHHHHHHHh----cCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHh----cCCHHHHHHHHHHHHHc
Q 036107          205 KDCISLSSQIFDVLIHGWCK----TRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCR----EKDFRKVDYTLKEMQEK  276 (441)
Q Consensus       205 ~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~a~~l~~~m~~~  276 (441)
                      -..  -+...+..+-..|..    .+++++|.+.|++..+.+   +...+..+-..|..    .+++++|...|++..+.
T Consensus        69 ~~~--~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~  143 (273)
T 1ouv_A           69 CDL--NYSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDL  143 (273)
T ss_dssp             HHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT
T ss_pred             HHC--CCHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhc
Confidence            432  266778888888888    899999999999888764   67788888888888    89999999999998886


Q ss_pred             CCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCccchHHHHHHHHHh----cCC
Q 036107          277 GCKPSVITCTIVMHALEK----AKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACV----RSE  348 (441)
Q Consensus       277 g~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~~~li~~~~~----~g~  348 (441)
                      +   +...+..+-..|..    .+++++|...|++..+.+   +...                +..+-..|..    .++
T Consensus       144 ~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a----------------~~~lg~~~~~g~~~~~~  201 (273)
T 1ouv_A          144 N---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLK---DSPG----------------CFNAGNMYHHGEGATKN  201 (273)
T ss_dssp             T---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHH----------------HHHHHHHHHHTCSSCCC
T ss_pred             C---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHH----------------HHHHHHHHHcCCCCCcc
Confidence            5   56677777777887    889999999999888765   2222                5666666777    888


Q ss_pred             hhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCChhhHHHHHH
Q 036107          349 EGNALKLRQKIEEDSCKPDCETHARSLKMCCH----KKRMKDGMLVLN  392 (441)
Q Consensus       349 ~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~----~g~~~~a~~~~~  392 (441)
                      +++|++.|++..+.+   +...+..+-..|.+    .+++++|.+.++
T Consensus       202 ~~~A~~~~~~a~~~~---~~~a~~~l~~~~~~g~~~~~~~~~A~~~~~  246 (273)
T 1ouv_A          202 FKEALARYSKACELE---NGGGCFNLGAMQYNGEGVTRNEKQAIENFK  246 (273)
T ss_dssp             HHHHHHHHHHHHHTT---CHHHHHHHHHHHHTTSSSSCCSTTHHHHHH
T ss_pred             HHHHHHHHHHHHhCC---CHHHHHHHHHHHHcCCCcccCHHHHHHHHH
Confidence            899999998887764   25666777777877    888888876433

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.39  E-value=1.6e-11  Score=109.78  Aligned_cols=251  Identities=9%  Similarity=-0.095  Sum_probs=186.3

Q ss_pred             HcCCChhHHHHHHHHHHHhcCCCccHHHHHHHHhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcHHHHHHHHH
Q 036107          141 GKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIH  220 (441)
Q Consensus       141 ~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~  220 (441)
                      ...|++++|++.|+++.+..+..++          .+..++..+...+...|++++|...|++.-...+.+..+|..+..
T Consensus        16 ~~~~~~~~A~~~~~~~~~~~~~~~~----------~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~   85 (275)
T 1xnf_A           16 QPTLQQEVILARMEQILASRALTDD----------ERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGI   85 (275)
T ss_dssp             CCCHHHHHHHHHHHHHHTSSCCCHH----------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHH
T ss_pred             CccchHHHHHHHHHHHHhcccccCc----------hhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHH
Confidence            3457899999999999885321111          156788999999999999999999999985555667889999999


Q ss_pred             HHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH
Q 036107          221 GWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYE  300 (441)
Q Consensus       221 ~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~  300 (441)
                      .|...|++++|.+.|++..+.. +.+..+|..+...+.+.|++++|...|+++.+..  |+.......+..+...|++++
T Consensus        86 ~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~  162 (275)
T 1xnf_A           86 YLTQAGNFDAAYEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD--PNDPFRSLWLYLAEQKLDEKQ  162 (275)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCHHH
T ss_pred             HHHHccCHHHHHHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHhcCHHH
Confidence            9999999999999999998742 2357889999999999999999999999998753  444445555566678899999


Q ss_pred             HHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCccchHHHHHHHHHhcCChhHHHHHHHHHHHcCCC--C-CHHHHHHHHHH
Q 036107          301 ALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCK--P-DCETHARSLKM  377 (441)
Q Consensus       301 a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~--p-~~~t~~~li~~  377 (441)
                      |...+....... +++..                 ...++..+...++.++|++.+++.......  | +...+..+...
T Consensus       163 A~~~~~~~~~~~-~~~~~-----------------~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~  224 (275)
T 1xnf_A          163 AKEVLKQHFEKS-DKEQW-----------------GWNIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKY  224 (275)
T ss_dssp             HHHHHHHHHHHS-CCCST-----------------HHHHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcC-CcchH-----------------HHHHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHH
Confidence            999998877643 22221                 223666677788889999999887643211  1 14678888999


Q ss_pred             HHhcCChhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCccHHHHHH
Q 036107          378 CCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEKKSLGNAKERID  429 (441)
Q Consensus       378 ~~~~g~~~~a~~~~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~  429 (441)
                      +.+.|++++|..   .+++...  ..|+.  +.....++...|++++|.+-+
T Consensus       225 ~~~~g~~~~A~~---~~~~al~--~~p~~--~~~~~~~~~~l~~~~~a~~~~  269 (275)
T 1xnf_A          225 YLSLGDLDSATA---LFKLAVA--NNVHN--FVEHRYALLELSLLGQDQDDL  269 (275)
T ss_dssp             HHHTTCHHHHHH---HHHHHHT--TCCTT--CHHHHHHHHHHHHHHHC----
T ss_pred             HHHcCCHHHHHH---HHHHHHh--CCchh--HHHHHHHHHHHHHHHhhHHHH
Confidence            999999999977   5555443  34532  223345667778888777655

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=99.39  E-value=6.6e-10  Score=115.88  Aligned_cols=269  Identities=10%  Similarity=0.014  Sum_probs=194.9

Q ss_pred             ChHHHHHHHhhhhhHhhhhcCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHhcCCCccHHHHHHHHhhcCHHHHHH
Q 036107          104 SPDKVVEALKCFCFTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSV  183 (441)
Q Consensus       104 ~~g~~~~A~~~~~~~~~~~~~g~~p~~~~y~~li~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~  183 (441)
                      ..+++++|.+.....         -++.+|..+-.++.+.|++++|.+.|.+.   +                |...|.-
T Consensus      1088 ~i~nldrAiE~Aerv---------n~p~vWsqLAKAql~~G~~kEAIdsYiKA---d----------------D~say~e 1139 (1630)
T 1xi4_A         1088 HIGNLDRAYEFAERC---------NEPAVWSQLAKAQLQKGMVKEAIDSYIKA---D----------------DPSSYME 1139 (1630)
T ss_pred             HHhhHHHHHHHHHhc---------CCHHHHHHHHHHHHhCCCHHHHHHHHHhc---C----------------ChHHHHH
Confidence            445566666655211         25778889999999999999999998653   3                7788888


Q ss_pred             HHHHHHhcCCHHHHHHHHHHhhhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCH
Q 036107          184 LMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDF  263 (441)
Q Consensus       184 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~  263 (441)
                      ++.++.+.|++++|.+.+...+... ++....+.+..+|++.+++++...+.    +   .++...|..+-..|...|++
T Consensus      1140 Va~~~~~lGkyEEAIeyL~mArk~~-~e~~Idt~LafaYAKl~rleele~fI----~---~~n~ad~~~iGd~le~eg~Y 1211 (1630)
T 1xi4_A         1140 VVQAANTSGNWEELVKYLQMARKKA-RESYVETELIFALAKTNRLAELEEFI----N---GPNNAHIQQVGDRCYDEKMY 1211 (1630)
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHhhc-ccccccHHHHHHHHhhcCHHHHHHHH----h---CCCHHHHHHHHHHHHhcCCH
Confidence            9999999999999999998765432 33334445889999998888644432    2   25677788888899999999


Q ss_pred             HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCcc----------
Q 036107          264 RKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRF----------  333 (441)
Q Consensus       264 ~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~----------  333 (441)
                      ++|..+|...         ..|..+..++.+.|++++|.+.+++..      +..+|..+-.+|...|+.          
T Consensus      1212 eeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA~------n~~aWkev~~acve~~Ef~LA~~cgl~I 1276 (1630)
T 1xi4_A         1212 DAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKAN------STRTWKEVCFACVDGKEFRLAQMCGLHI 1276 (1630)
T ss_pred             HHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHhC------CHHHHHHHHHHHhhhhHHHHHHHHHHhh
Confidence            9999999984         489999999999999999999998773      456777666666555554          


Q ss_pred             ----chHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCCC-----
Q 036107          334 ----LIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVP-----  404 (441)
Q Consensus       334 ----~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~~~~m~~~~~~p-----  404 (441)
                          ..+..++..|.+.|.+++|+.+++.-.... .-....|+-+-..+++. ..++..+.++.+..  .-.+.|     
T Consensus      1277 iv~~deLeeli~yYe~~G~feEAI~LlE~aL~Le-raH~gmftELaiLyaKy-~peklmEhlk~f~~--rini~k~~r~~ 1352 (1630)
T 1xi4_A         1277 VVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKF-KPQKMREHLELFWS--RVNIPKVLRAA 1352 (1630)
T ss_pred             hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-hhHhHHHHHHHHHHHhC-CHHHHHHHHHHHHH--hcccchHhHHH
Confidence                356788889999999999999997765332 22333565566666654 33433333444444  223333     


Q ss_pred             -CHHHHHHHHHHHHhcCCccHHHH
Q 036107          405 -QESTHKMLAEELEKKSLGNAKER  427 (441)
Q Consensus       405 -~~~~~~~ll~~~~~~g~~~~a~~  427 (441)
                       +...|.-++-.|.+.|+++.|..
T Consensus      1353 e~~~lW~elv~LY~~~~e~dnA~~ 1376 (1630)
T 1xi4_A         1353 EQAHLWAELVFLYDKYEEYDNAII 1376 (1630)
T ss_pred             HHHHHHHHHHHHHHhcccHHHHHH
Confidence             45679999999999999998873

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.39  E-value=2.7e-09  Score=95.39  Aligned_cols=224  Identities=12%  Similarity=-0.024  Sum_probs=187.0

Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcHHHHHHHHHHHHh----cCCHHHHHHHHHHHhhCCCCCCHhhHHH
Q 036107          177 DTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCK----TRKSDYAQKAMKEMFQHGFSPDGVSYTC  252 (441)
Q Consensus       177 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~g~~p~~~~~~~  252 (441)
                      +..++..+-..+...|++++|.+.|++..+  .-+...+..+-..|..    .+++++|.+.|++..+.+   +...+..
T Consensus         5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~   79 (273)
T 1ouv_A            5 DPKELVGLGAKSYKEKDFTQAKKYFEKACD--LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHL   79 (273)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred             ChHHHHHHHHHHHhCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHHH
Confidence            677888888899999999999999998754  3455678888889999    999999999999999875   7888889


Q ss_pred             HHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHhhCCCCCCHHHHHHHH
Q 036107          253 FIEHYCR----EKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEK----AKQIYEALKVYEKMKSDDCLTDTSFYSSLI  324 (441)
Q Consensus       253 li~~~~~----~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~m~~~g~~~~~~~~~~li  324 (441)
                      +-..|..    .+++++|...|++..+.+   +...+..+-..|..    .+++++|...|++..+.+   +...     
T Consensus        80 lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a-----  148 (273)
T 1ouv_A           80 LGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDG-----  148 (273)
T ss_dssp             HHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHH-----
T ss_pred             HHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHH-----
Confidence            9999999    999999999999998875   77888999999999    999999999999999876   3333     


Q ss_pred             HHHHhcCccchHHHHHHHHHh----cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCChhhHHHHHHHHHH
Q 036107          325 FILSKAVRFLIYNTMISSACV----RSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCH----KKRMKDGMLVLNLMRE  396 (441)
Q Consensus       325 ~~~~~~g~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~----~g~~~~a~~~~~~~~~  396 (441)
                                 +..+-..|..    .+++++|+..|++..+.+   +...+..+-..|..    .+++++|.+   .+++
T Consensus       149 -----------~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~---~~~~  211 (273)
T 1ouv_A          149 -----------CTILGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALA---RYSK  211 (273)
T ss_dssp             -----------HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHH---HHHH
T ss_pred             -----------HHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHH---HHHH
Confidence                       5566666666    899999999999988764   46777788888888    999999977   5555


Q ss_pred             HHHCCCCCCHHHHHHHHHHHHh----cCCccHHHHHHHHHHHHh
Q 036107          397 MLSKGIVPQESTHKMLAEELEK----KSLGNAKERIDELLTHAT  436 (441)
Q Consensus       397 m~~~~~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~m~~~~  436 (441)
                      ..+.+   +...+..+-..|.+    .+++++|.+.++......
T Consensus       212 a~~~~---~~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~  252 (273)
T 1ouv_A          212 ACELE---NGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLG  252 (273)
T ss_dssp             HHHTT---CHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred             HHhCC---CHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcC
Confidence            55443   26778888888888    999999999998866544

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=99.38  E-value=7.3e-10  Score=115.58  Aligned_cols=310  Identities=12%  Similarity=0.078  Sum_probs=169.2

Q ss_pred             cccccchhhHHHhhhhchhhHHHHHhhhcCc-hhhHHHHHHHHH--hcCCChHHHHHHHhhhhhHhhhhcCCCCCCHHHH
Q 036107           57 DFVIPSLASWVESLKLNEQSRISSHALSEDH-ETDVDKVSEILR--KRYPSPDKVVEALKCFCFTWAKTQTGYMHTPETY  133 (441)
Q Consensus        57 ~~~~~~l~~~~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~~~l~--~~~~~~g~~~~A~~~~~~~~~~~~~g~~p~~~~y  133 (441)
                      .-.+...+++..++.+.++..+++.+...+- ..+-..+.+.|+  ....+.+++.+.+.-++             ....
T Consensus       986 eeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIkaD~~Rv~eyI~kLd-------------~~d~ 1052 (1630)
T 1xi4_A          986 EEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKADRTRVMEYINRLD-------------NYDA 1052 (1630)
T ss_pred             HHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHhChhhHHHHHHHhh-------------hccH
Confidence            3445556677777777777777777764321 111224555544  23334455555444431             1112


Q ss_pred             HHHHHHHHcCCChhHHHHHHHHHHHhcCC-Ccc------H-HHHHHHHhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHhh
Q 036107          134 NAMVEALGKSKKFGLMWELVKEIDELSNG-YVS------L-AAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFK  205 (441)
Q Consensus       134 ~~li~~~~~~~~~~~a~~l~~~m~~~~~~-~~~------~-~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~  205 (441)
                      ..+-..+...|.+++|.++|++....... ...      + ......-+.-++.+|..+-.++.+.|++++|.+.|.+. 
T Consensus      1053 ~eIA~Iai~lglyEEAf~IYkKa~~~~~A~~VLie~i~nldrAiE~Aervn~p~vWsqLAKAql~~G~~kEAIdsYiKA- 1131 (1630)
T 1xi4_A         1053 PDIANIAISNELFEEAFAIFRKFDVNTSAVQVLIEHIGNLDRAYEFAERCNEPAVWSQLAKAQLQKGMVKEAIDSYIKA- 1131 (1630)
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHHHHHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCHHHHHHHHHhc-
Confidence            23445566677777777777774321100 000      0 00000001114566666666666666666666666443 


Q ss_pred             hCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 036107          206 DCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITC  285 (441)
Q Consensus       206 ~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~  285 (441)
                          -|...|..++.++.+.|++++|.+.|..-++..  ++....+.+..+|++.+++++.....    +   .++...|
T Consensus      1132 ----dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI----~---~~n~ad~ 1198 (1630)
T 1xi4_A         1132 ----DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI----N---GPNNAHI 1198 (1630)
T ss_pred             ----CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH----h---CCCHHHH
Confidence                234445556666666666666666666544432  33333444666666666655433322    1   2344555


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCccchHHHHHHHHHhcCChhHHHHHHHHHHHcCCC
Q 036107          286 TIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCK  365 (441)
Q Consensus       286 ~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~  365 (441)
                      ..+-..|...|++++|..+|...                         ..|..+...|++.|++++|++.+++-      
T Consensus      1199 ~~iGd~le~eg~YeeA~~~Y~kA-------------------------~ny~rLA~tLvkLge~q~AIEaarKA------ 1247 (1630)
T 1xi4_A         1199 QQVGDRCYDEKMYDAAKLLYNNV-------------------------SNFGRLASTLVHLGEYQAAVDGARKA------ 1247 (1630)
T ss_pred             HHHHHHHHhcCCHHHHHHHHHhh-------------------------hHHHHHHHHHHHhCCHHHHHHHHHHh------
Confidence            55666666666666666666653                         22777777777777777777777664      


Q ss_pred             CCHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCccHHHHHHHHH
Q 036107          366 PDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEKKSLGNAKERIDELL  432 (441)
Q Consensus       366 p~~~t~~~li~~~~~~g~~~~a~~~~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m  432 (441)
                      -+..+|..+-.+|...|++..|...   .     .++..+...+..++..|.+.|.+++|..+++.-
T Consensus      1248 ~n~~aWkev~~acve~~Ef~LA~~c---g-----l~Iiv~~deLeeli~yYe~~G~feEAI~LlE~a 1306 (1630)
T 1xi4_A         1248 NSTRTWKEVCFACVDGKEFRLAQMC---G-----LHIVVHADELEELINYYQDRGYFEELITMLEAA 1306 (1630)
T ss_pred             CCHHHHHHHHHHHhhhhHHHHHHHH---H-----HhhhcCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            2446666666666666666666431   1     124455566666777777777777777666543

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.37  E-value=1.3e-10  Score=100.35  Aligned_cols=192  Identities=11%  Similarity=-0.045  Sum_probs=99.2

Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHH
Q 036107          177 DTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEH  256 (441)
Q Consensus       177 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~  256 (441)
                      +...+..+-..+.+.|++++|...|++.-...+.+...+..+-..+.+.|++++|...|++..+.. +.+...+..+-..
T Consensus         4 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~   82 (217)
T 2pl2_A            4 AEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLSEA   82 (217)
T ss_dssp             CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHH
Confidence            344555555566666666666666666544344455556666666666666666666666665532 1134455555555


Q ss_pred             HHhc-----------CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHH
Q 036107          257 YCRE-----------KDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIF  325 (441)
Q Consensus       257 ~~~~-----------g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~  325 (441)
                      +.+.           |++++|...|++..+... -+...+..+-.++...|++++|...|++..+..  .+...      
T Consensus        83 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~------  153 (217)
T 2pl2_A           83 YVALYRQAEDRERGKGYLEQALSVLKDAERVNP-RYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEI------  153 (217)
T ss_dssp             HHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHH------
T ss_pred             HHHhhhhhhhhcccccCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHH------
Confidence            6665           666666666665555321 134555555555566666666666666555544  23322      


Q ss_pred             HHHhcCccchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHH
Q 036107          326 ILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGML  389 (441)
Q Consensus       326 ~~~~~g~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~  389 (441)
                                +..+-..|...|++++|+..|++..+.. .-+...+..+...+.+.|++++|.+
T Consensus       154 ----------~~~la~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~  206 (217)
T 2pl2_A          154 ----------RSALAELYLSMGRLDEALAQYAKALEQA-PKDLDLRVRYASALLLKGKAEEAAR  206 (217)
T ss_dssp             ----------HHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTC---------
T ss_pred             ----------HHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHH
Confidence                      4455555555555566666655554431 1123344455555555555555544

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=99.36  E-value=6.3e-08  Score=94.35  Aligned_cols=293  Identities=11%  Similarity=0.010  Sum_probs=221.4

Q ss_pred             hcCCChHHHHHHHhhhhhHhhhhcCCCCCCHHHHHHHHHHHHc----CCChhHHHHHHHHHHHhcCCCccHHHHHHHHhh
Q 036107          100 KRYPSPDKVVEALKCFCFTWAKTQTGYMHTPETYNAMVEALGK----SKKFGLMWELVKEIDELSNGYVSLAAMSTVMRR  175 (441)
Q Consensus       100 ~~~~~~g~~~~A~~~~~~~~~~~~~g~~p~~~~y~~li~~~~~----~~~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~  175 (441)
                      ......++.+.|+..|...-.   .|   +...+..+-..|..    .+++++|.+.|++..+.+               
T Consensus        51 ~g~~~~~~~~~A~~~~~~a~~---~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---------------  109 (490)
T 2xm6_A           51 QGNETTKDLTQAMDWFRRAAE---QG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---------------  109 (490)
T ss_dssp             HTSSSCCCHHHHHHHHHHHHH---TT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---------------
T ss_pred             cCCCCCcCHHHHHHHHHHHHH---CC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---------------
Confidence            333447889999998864332   23   67788888888888    899999999999998866               


Q ss_pred             cCHHHHHHHHHHHHh----cCCHHHHHHHHHHhhhCCCCcHHHHHHHHHHHHh----cCCHHHHHHHHHHHhhCCCCCCH
Q 036107          176 LDTRAMSVLMDTLVK----RNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCK----TRKSDYAQKAMKEMFQHGFSPDG  247 (441)
Q Consensus       176 ~~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~g~~p~~  247 (441)
                       +...+..|-..|..    .++.++|.+.|+.....  -+...+..|-..|..    .+++++|.+.|++..+.|   +.
T Consensus       110 -~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~  183 (490)
T 2xm6_A          110 -LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQ--GRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NV  183 (490)
T ss_dssp             -CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CH
T ss_pred             -CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CH
Confidence             77788888888888    88999999999987442  245667777788877    789999999999998864   67


Q ss_pred             hhHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHhhCCCCCCHHH
Q 036107          248 VSYTCFIEHYCR----EKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEK----AKQIYEALKVYEKMKSDDCLTDTSF  319 (441)
Q Consensus       248 ~~~~~li~~~~~----~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~m~~~g~~~~~~~  319 (441)
                      ..+..+-..|..    .+++++|.+.|++..+.|   +...+..+-..|..    .+++++|...|+...+.|   +...
T Consensus       184 ~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a  257 (490)
T 2xm6_A          184 WSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIA  257 (490)
T ss_dssp             HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHH
T ss_pred             HHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHH
Confidence            888888888887    899999999999998875   56777888888876    889999999999988875   3444


Q ss_pred             HHHHHHHHHh----cCcc----------------chHHHHHHHHHhc-----CChhHHHHHHHHHHHcCCCCCHHHHHHH
Q 036107          320 YSSLIFILSK----AVRF----------------LIYNTMISSACVR-----SEEGNALKLRQKIEEDSCKPDCETHARS  374 (441)
Q Consensus       320 ~~~li~~~~~----~g~~----------------~~~~~li~~~~~~-----g~~~~a~~~~~~m~~~g~~p~~~t~~~l  374 (441)
                      +..+-..|..    .++.                ..+..+-..|...     ++.++|+..|++..+.|   +...+..+
T Consensus       258 ~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~l  334 (490)
T 2xm6_A          258 QFRLGYILEQGLAGAKEPLKALEWYRKSAEQGNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANL  334 (490)
T ss_dssp             HHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred             HHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHH
Confidence            4444444444    2322                4555566666666     78889999998887765   44556666


Q ss_pred             HHHHHhcC---ChhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCccHHHHHHHHHHH
Q 036107          375 LKMCCHKK---RMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEK----KSLGNAKERIDELLTH  434 (441)
Q Consensus       375 i~~~~~~g---~~~~a~~~~~~~~~m~~~~~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~m~~  434 (441)
                      -..|...|   +.++|.+   .+++..+.   .+...+..|-..|..    .+++++|.+.++....
T Consensus       335 g~~y~~~g~~~~~~~A~~---~~~~a~~~---~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~  395 (490)
T 2xm6_A          335 GAIYFRLGSEEEHKKAVE---WFRKAAAK---GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAE  395 (490)
T ss_dssp             HHHHHHSCCHHHHHHHHH---HHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH
T ss_pred             HHHHHhCCCcccHHHHHH---HHHHHHHC---CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHh
Confidence            66666656   5556644   66665554   356777788888887    7888999888887544

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.34  E-value=2e-10  Score=100.43  Aligned_cols=199  Identities=12%  Similarity=0.003  Sum_probs=155.2

Q ss_pred             HHHHHHhcCCChHHHHHHHhhhhhHhhhhcCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHhcCCCccHHHHHHHH
Q 036107           94 VSEILRKRYPSPDKVVEALKCFCFTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVM  173 (441)
Q Consensus        94 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~g~~p~~~~y~~li~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~~~  173 (441)
                      .+..+...+.+.|++++|+..|+....    ....+...|..+...+...|++++|.+.+++.....+.           
T Consensus        25 ~~~~~a~~~~~~~~~~~A~~~~~~~l~----~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-----------   89 (243)
T 2q7f_A           25 TGGQQMGRGSEFGDYEKAAEAFTKAIE----ENKEDAIPYINFANLLSSVNELERALAFYDKALELDSS-----------   89 (243)
T ss_dssp             -----------------CCTTHHHHHT----TCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-----------
T ss_pred             HHHHHHHHHHHhhCHHHHHHHHHHHHH----hCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCc-----------
Confidence            444455678889999999999864432    22236789999999999999999999999999886522           


Q ss_pred             hhcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHH
Q 036107          174 RRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCF  253 (441)
Q Consensus       174 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l  253 (441)
                         +..++..+...+...|++++|.+.+++.....+.+...+..+...+.+.|++++|.+.+++..+.. +.+...+..+
T Consensus        90 ---~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l  165 (243)
T 2q7f_A           90 ---AATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQF  165 (243)
T ss_dssp             ---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred             ---chHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHH
Confidence               678889999999999999999999999865556678889999999999999999999999998742 2367889999


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCC
Q 036107          254 IEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDD  312 (441)
Q Consensus       254 i~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g  312 (441)
                      ...+.+.|++++|...|++..+... .+..++..+..+|.+.|++++|.+.+++..+..
T Consensus       166 ~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~  223 (243)
T 2q7f_A          166 GMCLANEGMLDEALSQFAAVTEQDP-GHADAFYNAGVTYAYKENREKALEMLDKAIDIQ  223 (243)
T ss_dssp             HHHHHHHTCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHC
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHccCHHHHHHHHHHHHccC
Confidence            9999999999999999999987643 367889999999999999999999999998753

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=99.34  E-value=1e-10  Score=111.11  Aligned_cols=284  Identities=8%  Similarity=-0.085  Sum_probs=207.0

Q ss_pred             HHHHHHHHHHHcCCChhHHHHHHHHHHHhcCCCccHHHHHHHHhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhh----
Q 036107          131 ETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKD----  206 (441)
Q Consensus       131 ~~y~~li~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~----  206 (441)
                      ..+..+-..+...|++++|.+.|++..+..+..+..          -...+..+...+...|++++|.+.+++...    
T Consensus        49 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~----------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~  118 (411)
T 4a1s_A           49 LELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRT----------LSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKS  118 (411)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHH----------HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhH----------HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence            445566677889999999999999998865331100          125788888899999999999999987622    


Q ss_pred             -C-CCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC----C-CCCCHhhHHHHHHHHHhcCC-----------------
Q 036107          207 -C-ISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQH----G-FSPDGVSYTCFIEHYCREKD-----------------  262 (441)
Q Consensus       207 -~-~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----g-~~p~~~~~~~li~~~~~~g~-----------------  262 (441)
                       + .......+..+-..|...|++++|.+.|++..+.    + ......++..+-..|...|+                 
T Consensus       119 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~  198 (411)
T 4a1s_A          119 MNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEA  198 (411)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHH
T ss_pred             ccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHH
Confidence             1 2334567888889999999999999999887653    1 11234578888889999999                 


Q ss_pred             HHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC-CCHHHHHHHHHHHHhcCccchH
Q 036107          263 FRKVDYTLKEMQEK----GCKP-SVITCTIVMHALEKAKQIYEALKVYEKMKSDDCL-TDTSFYSSLIFILSKAVRFLIY  336 (441)
Q Consensus       263 ~~~a~~l~~~m~~~----g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~-~~~~~~~~li~~~~~~g~~~~~  336 (441)
                      +++|...+++..+.    +..+ ...++..+...|...|++++|...+++..+.... .+...   ..         ..+
T Consensus       199 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~---~~---------~~~  266 (411)
T 4a1s_A          199 LTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAA---ER---------RAN  266 (411)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHH---HH---------HHH
T ss_pred             HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHH---HH---------HHH
Confidence            99999999886542    2212 2457888889999999999999999987653110 11110   00         237


Q ss_pred             HHHHHHHHhcCChhHHHHHHHHHHHcCC-CC----CHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHC-CC-CCCHHHH
Q 036107          337 NTMISSACVRSEEGNALKLRQKIEEDSC-KP----DCETHARSLKMCCHKKRMKDGMLVLNLMREMLSK-GI-VPQESTH  409 (441)
Q Consensus       337 ~~li~~~~~~g~~~~a~~~~~~m~~~g~-~p----~~~t~~~li~~~~~~g~~~~a~~~~~~~~~m~~~-~~-~p~~~~~  409 (441)
                      ..+...|...|++++|++.+++..+... ..    ...++..+...+...|++++|.+.++...++... +. .....++
T Consensus       267 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~  346 (411)
T 4a1s_A          267 SNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARAC  346 (411)
T ss_dssp             HHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred             HHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHH
Confidence            8888899999999999999988764211 11    1457788888999999999998866654443322 21 1124478


Q ss_pred             HHHHHHHHhcCCccHHHHHHHHHHHHh
Q 036107          410 KMLAEELEKKSLGNAKERIDELLTHAT  436 (441)
Q Consensus       410 ~~ll~~~~~~g~~~~a~~~~~~m~~~~  436 (441)
                      ..+...|.+.|++++|.+.++...+..
T Consensus       347 ~~la~~~~~~g~~~~A~~~~~~al~~~  373 (411)
T 4a1s_A          347 WSLGNAHSAIGGHERALKYAEQHLQLA  373 (411)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence            888999999999999999999876554

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=99.31  E-value=1.8e-09  Score=104.61  Aligned_cols=334  Identities=11%  Similarity=-0.023  Sum_probs=209.1

Q ss_pred             HHHHHHHhcCCChHHHHHHHhhhhhHhhhh-----cCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHhcCCCccHH
Q 036107           93 KVSEILRKRYPSPDKVVEALKCFCFTWAKT-----QTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLA  167 (441)
Q Consensus        93 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-----~~g~~p~~~~y~~li~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~  167 (441)
                      .+++.|...+...|+.++|++.|+......     .........+|+.+-.+|...|++++|...+++..+..+......
T Consensus        52 ~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~  131 (472)
T 4g1t_A           52 TMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPY  131 (472)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSS
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccccc
Confidence            578888888888899999999887332211     111222467999999999999999999999998776421111000


Q ss_pred             HHHHHHhhcCHHHHHHHHHHHHhc--CCHHHHHHHHHHhhhCCCCcHHHHHHHHHH---HHhcCCHHHHHHHHHHHhhCC
Q 036107          168 AMSTVMRRLDTRAMSVLMDTLVKR--NSVAHAYKVFLKFKDCISLSSQIFDVLIHG---WCKTRKSDYAQKAMKEMFQHG  242 (441)
Q Consensus       168 ~~~~~~~~~~~~~~~~li~~~~~~--g~~~~a~~~~~~~~~~~~~~~~~~~~li~~---~~~~~~~~~a~~~~~~m~~~g  242 (441)
                            ......++..+-.++.+.  +++++|.+.|++.-...+-+...+..+..+   +...++.++|++.|++..+..
T Consensus       132 ------~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~  205 (472)
T 4g1t_A          132 ------RIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN  205 (472)
T ss_dssp             ------CCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC
T ss_pred             ------chhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC
Confidence                  001345666555555554  579999999998744333445555555444   445677888998888877632


Q ss_pred             CCCCHhhHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHH
Q 036107          243 FSPDGVSYTCFIEHYCR----EKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTS  318 (441)
Q Consensus       243 ~~p~~~~~~~li~~~~~----~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~  318 (441)
                       +.+..++..+...+..    .|++++|.+++++..+... .+...+..+...|.+.|++++|...+++..+.. +-+..
T Consensus       206 -p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~  282 (472)
T 4g1t_A          206 -PDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAP-GVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI-PNNAY  282 (472)
T ss_dssp             -SSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCS-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHH
T ss_pred             -CcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCc-cHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CChHH
Confidence             1244556555555544    4577899999998877643 367888999999999999999999999988753 22444


Q ss_pred             HHHHHHHHHHhcCc-------------------------------------cchHHHHHHHHHhcCChhHHHHHHHHHHH
Q 036107          319 FYSSLIFILSKAVR-------------------------------------FLIYNTMISSACVRSEEGNALKLRQKIEE  361 (441)
Q Consensus       319 ~~~~li~~~~~~g~-------------------------------------~~~~~~li~~~~~~g~~~~a~~~~~~m~~  361 (441)
                      ++..+-..|...+.                                     ...|..+-..|...|++++|++.|++..+
T Consensus       283 ~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~  362 (472)
T 4g1t_A          283 LHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFS  362 (472)
T ss_dssp             HHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhccHHHHHHHHHHHHh
Confidence            55544443322110                                     06678888999999999999999999887


Q ss_pred             cCCCCCHH--HHHHHHH-HHHhcCChhhHHHHHHHHHH-----------------HHH---CCCCCCHHHHHHHHHHHHh
Q 036107          362 DSCKPDCE--THARSLK-MCCHKKRMKDGMLVLNLMRE-----------------MLS---KGIVPQESTHKMLAEELEK  418 (441)
Q Consensus       362 ~g~~p~~~--t~~~li~-~~~~~g~~~~a~~~~~~~~~-----------------m~~---~~~~p~~~~~~~ll~~~~~  418 (441)
                      ....|...  .+..+.. .....|+.++|...++..-+                 +.+   ..-+.+..+|..+-..+..
T Consensus       363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~~~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~  442 (472)
T 4g1t_A          363 KELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKMKDKLQKIAKMRLSKNGADSEALHVLAFLQEL  442 (472)
T ss_dssp             SCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHHHHHCC-CTTHHHHHHHHHHH
T ss_pred             cCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            64333221  1222221 23467888888764431111                 000   0123345688889999999


Q ss_pred             cCCccHHHHHHHHHHHH
Q 036107          419 KSLGNAKERIDELLTHA  435 (441)
Q Consensus       419 ~g~~~~a~~~~~~m~~~  435 (441)
                      .|++++|.+.++.--+.
T Consensus       443 ~g~~~~A~~~y~kALe~  459 (472)
T 4g1t_A          443 NEKMQQADEDSERGLES  459 (472)
T ss_dssp             HHHCC------------
T ss_pred             cCCHHHHHHHHHHHHhc
Confidence            99999999999876544

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=99.31  E-value=2.3e-10  Score=104.90  Aligned_cols=285  Identities=9%  Similarity=-0.110  Sum_probs=203.6

Q ss_pred             HHHHHHHHHHHcCCChhHHHHHHHHHHHhcCCCccHHHHHHHHhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhh----
Q 036107          131 ETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKD----  206 (441)
Q Consensus       131 ~~y~~li~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~----  206 (441)
                      ..+...-..+...|++++|...|++..+..+..+.          .-...+..+...+...|++++|.+.+++...    
T Consensus         6 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~----------~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~   75 (338)
T 3ro2_A            6 LELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLK----------TLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLART   75 (338)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHH----------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHhhCcccHH----------HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhc
Confidence            34455566778899999999999999886533110          0146788888999999999999999987521    


Q ss_pred             -C-CCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCC-CCC----HhhHHHHHHHHHhcCC-----------------
Q 036107          207 -C-ISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGF-SPD----GVSYTCFIEHYCREKD-----------------  262 (441)
Q Consensus       207 -~-~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~-~p~----~~~~~~li~~~~~~g~-----------------  262 (441)
                       + ......++..+...|...|++++|...+++..+..- .++    ..++..+...+...|+                 
T Consensus        76 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a  155 (338)
T 3ro2_A           76 IGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDV  155 (338)
T ss_dssp             HTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHH
T ss_pred             ccccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhH
Confidence             1 122355788888999999999999999988764210 112    3478888889999999                 


Q ss_pred             ---HHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCC-CCCHHHHHHHHHHHHhcCcc
Q 036107          263 ---FRKVDYTLKEMQEK----GCKP-SVITCTIVMHALEKAKQIYEALKVYEKMKSDDC-LTDTSFYSSLIFILSKAVRF  333 (441)
Q Consensus       263 ---~~~a~~l~~~m~~~----g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~-~~~~~~~~~li~~~~~~g~~  333 (441)
                         +++|...+++..+.    +..+ ...++..+...+...|++++|...+++..+... .++...   ..         
T Consensus       156 ~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~---~~---------  223 (338)
T 3ro2_A          156 RNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAA---ER---------  223 (338)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHH---HH---------
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHH---HH---------
Confidence               99999999886442    2222 245788888899999999999999998765210 011110   00         


Q ss_pred             chHHHHHHHHHhcCChhHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHC-CCC-CCH
Q 036107          334 LIYNTMISSACVRSEEGNALKLRQKIEEDSC-KPD----CETHARSLKMCCHKKRMKDGMLVLNLMREMLSK-GIV-PQE  406 (441)
Q Consensus       334 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~-~p~----~~t~~~li~~~~~~g~~~~a~~~~~~~~~m~~~-~~~-p~~  406 (441)
                      .++..+...|...|++++|.+.+++..+... .++    ..++..+...+...|++++|.+.++...++... +-. ...
T Consensus       224 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~  303 (338)
T 3ro2_A          224 RAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEG  303 (338)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHH
Confidence            2478888889999999999999988764211 122    456778888999999999998866654443322 211 124


Q ss_pred             HHHHHHHHHHHhcCCccHHHHHHHHHHHHhh
Q 036107          407 STHKMLAEELEKKSLGNAKERIDELLTHATE  437 (441)
Q Consensus       407 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~  437 (441)
                      .++..+...+.+.|++++|.+.++...+..+
T Consensus       304 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~  334 (338)
T 3ro2_A          304 RACWSLGNAYTALGNHDQAMHFAEKHLEISR  334 (338)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHC--
T ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Confidence            4788899999999999999999998766543

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.30  E-value=6.2e-10  Score=99.19  Aligned_cols=230  Identities=9%  Similarity=-0.044  Sum_probs=173.1

Q ss_pred             HHHHHHHHHHHcCCChhHHHHHHHHHHHhcCCCccHHHHHHHHhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhh-C--
Q 036107          131 ETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKD-C--  207 (441)
Q Consensus       131 ~~y~~li~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~-~--  207 (441)
                      ..+...-..+...|++++|.+.|++..+..+.              +...+..+...+...|++++|.+.++.... .  
T Consensus         4 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~--------------~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~   69 (272)
T 3u4t_A            4 DVEFRYADFLFKNNNYAEAIEVFNKLEAKKYN--------------SPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNA   69 (272)
T ss_dssp             -CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCC--------------CSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCT
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC--------------cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCc
Confidence            34555667788999999999999999885532              456788888899999999999999998744 1  


Q ss_pred             CCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 036107          208 ISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTI  287 (441)
Q Consensus       208 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~  287 (441)
                      .......|..+...+...|++++|.+.|++..+.. +.+..+|..+...+...|++++|...|++..+.. +.+...|..
T Consensus        70 ~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~  147 (272)
T 3u4t_A           70 TKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYE  147 (272)
T ss_dssp             TTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHH
Confidence            11223448889999999999999999999998743 2355789999999999999999999999987762 335667777


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCccchHHHHHHHHHhcCC---hhHHHHHHHHHHHcC-
Q 036107          288 VMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSE---EGNALKLRQKIEEDS-  363 (441)
Q Consensus       288 ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~~~li~~~~~~g~---~~~a~~~~~~m~~~g-  363 (441)
                      +...+...+++++|.+.|++..+... .+...                +..+...+...|+   .++|...+++..+.. 
T Consensus       148 l~~~~~~~~~~~~A~~~~~~a~~~~p-~~~~~----------------~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~  210 (272)
T 3u4t_A          148 LGQAYYYNKEYVKADSSFVKVLELKP-NIYIG----------------YLWRARANAAQDPDTKQGLAKPYYEKLIEVCA  210 (272)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHST-TCHHH----------------HHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHG
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCc-cchHH----------------HHHHHHHHHHcCcchhhHHHHHHHHHHHHHHh
Confidence            77345555699999999999987532 12322                5556666666677   788999988876432 


Q ss_pred             CCCC------HHHHHHHHHHHHhcCChhhHHHHHHH
Q 036107          364 CKPD------CETHARSLKMCCHKKRMKDGMLVLNL  393 (441)
Q Consensus       364 ~~p~------~~t~~~li~~~~~~g~~~~a~~~~~~  393 (441)
                      -.|+      ...|..+-..|...|++++|.+.++.
T Consensus       211 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~  246 (272)
T 3u4t_A          211 PGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKN  246 (272)
T ss_dssp             GGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             cccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            2243      25677788889999999999775443

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=99.30  E-value=4.5e-10  Score=106.19  Aligned_cols=287  Identities=9%  Similarity=-0.115  Sum_probs=202.6

Q ss_pred             CCHHHHHHHHHHHHcCCChhHHHHHHHHHHHhcCCCccHHHHHHHHhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhh-
Q 036107          128 HTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKD-  206 (441)
Q Consensus       128 p~~~~y~~li~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~-  206 (441)
                      +....+...-..+...|++++|...|++..+..+..+..          -..++..+...+...|++++|...+++... 
T Consensus         7 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~----------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~   76 (406)
T 3sf4_A            7 ASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKT----------LSAIYSQLGNAYFYLHDYAKALEYHHHDLTL   76 (406)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHH----------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHH----------HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence            356667777788889999999999999988865332100          135777888899999999999999987521 


Q ss_pred             ----CC-CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCC-CCC----HhhHHHHHHHHHhcCC--------------
Q 036107          207 ----CI-SLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGF-SPD----GVSYTCFIEHYCREKD--------------  262 (441)
Q Consensus       207 ----~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~-~p~----~~~~~~li~~~~~~g~--------------  262 (441)
                          +. +....++..+...|...|++++|...+++..+..- .++    ..++..+-..+...|+              
T Consensus        77 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~  156 (406)
T 3sf4_A           77 ARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFP  156 (406)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCC
T ss_pred             HHhccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhh
Confidence                11 22355677888889999999999999888765210 011    4478888888999999              


Q ss_pred             ------HHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCC-CCCHHHHHHHHHHHHhc
Q 036107          263 ------FRKVDYTLKEMQEK----GCKP-SVITCTIVMHALEKAKQIYEALKVYEKMKSDDC-LTDTSFYSSLIFILSKA  330 (441)
Q Consensus       263 ------~~~a~~l~~~m~~~----g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~-~~~~~~~~~li~~~~~~  330 (441)
                            +++|...+++..+.    +..| ...++..+...|...|++++|...+++..+... .++....   .      
T Consensus       157 ~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~---~------  227 (406)
T 3sf4_A          157 EEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAE---R------  227 (406)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHH---H------
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHH---H------
Confidence                  99999998876442    2122 245678888889999999999999988765210 1121100   0      


Q ss_pred             CccchHHHHHHHHHhcCChhHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHC-CCCC
Q 036107          331 VRFLIYNTMISSACVRSEEGNALKLRQKIEEDSC-KPD----CETHARSLKMCCHKKRMKDGMLVLNLMREMLSK-GIVP  404 (441)
Q Consensus       331 g~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~-~p~----~~t~~~li~~~~~~g~~~~a~~~~~~~~~m~~~-~~~p  404 (441)
                         .+|..+...|...|++++|+..+++..+... .++    ..++..+...+...|++++|.+.++...++... +-.+
T Consensus       228 ---~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~  304 (406)
T 3sf4_A          228 ---RAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRI  304 (406)
T ss_dssp             ---HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             ---HHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcH
Confidence               2377888889999999999999988753210 112    456778888899999999998866644443322 2111


Q ss_pred             -CHHHHHHHHHHHHhcCCccHHHHHHHHHHHHh
Q 036107          405 -QESTHKMLAEELEKKSLGNAKERIDELLTHAT  436 (441)
Q Consensus       405 -~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~  436 (441)
                       ...++..+...+.+.|++++|.+.++...+..
T Consensus       305 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  337 (406)
T 3sf4_A          305 GEGRACWSLGNAYTALGNHDQAMHFAEKHLEIS  337 (406)
T ss_dssp             HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence             14578888888999999999999988865543

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=99.30  E-value=2.4e-09  Score=105.53  Aligned_cols=372  Identities=9%  Similarity=0.041  Sum_probs=210.4

Q ss_pred             ccchhcccccCccchhccCCCCCC-CCcccccchhhHHHhhhhchhhHHHHHhhhcCchhhHHHHHHHHHh-cCCChHHH
Q 036107           31 NRHCITNELTGLPSWLKFFDTQSP-DEDFVIPSLASWVESLKLNEQSRISSHALSEDHETDVDKVSEILRK-RYPSPDKV  108 (441)
Q Consensus        31 ~~~~~~~~a~~l~~~~~~~~~~~p-~~~~~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~-~~~~~g~~  108 (441)
                      +.|++. +|..+++..-.   ..| +...+...+..+.+.++.+.+..++..+++...  +++ +....+. .....|+.
T Consensus        24 ~~~~~~-~a~~~~e~al~---~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p--~~~-lw~~~~~~~~~~~~~~   96 (530)
T 2ooe_A           24 QNQPID-KARKTYERLVA---QFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVL--HID-LWKCYLSYVRETKGKL   96 (530)
T ss_dssp             HSSCHH-HHHHHHHHHHT---TCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCC--CHH-HHHHHHHHHHHHTTTS
T ss_pred             HhCCHH-HHHHHHHHHHH---HCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC--ChH-HHHHHHHHHHHHccch
Confidence            345565 66666652222   223 334566677777778889999999998888763  332 2222221 11111222


Q ss_pred             HH----HHhhhhhHhhhhcCCCCC-CHHHHHHHHHHHHc---------CCChhHHHHHHHHHHHhcCCCccHHHHH---H
Q 036107          109 VE----ALKCFCFTWAKTQTGYMH-TPETYNAMVEALGK---------SKKFGLMWELVKEIDELSNGYVSLAAMS---T  171 (441)
Q Consensus       109 ~~----A~~~~~~~~~~~~~g~~p-~~~~y~~li~~~~~---------~~~~~~a~~l~~~m~~~~~~~~~~~~~~---~  171 (441)
                      +.    +.++|+....  ..|..| +...|...+....+         .|+++.|..+|++....+ .......+.   .
T Consensus        97 ~~a~~~~~~~~~~al~--~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P-~~~~~~~~~~~~~  173 (530)
T 2ooe_A           97 PSYKEKMAQAYDFALD--KIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNP-MINIEQLWRDYNK  173 (530)
T ss_dssp             TTHHHHHHHHHHHHHH--HTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSC-CTTHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHH--HCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhch-hhhHHHHHHHHHH
Confidence            22    3335542221  234443 46678777776554         578888888888877632 221111111   0


Q ss_pred             HHhhcC--------------------------------------------------HHHHHHHHHHHHhc----CCH---
Q 036107          172 VMRRLD--------------------------------------------------TRAMSVLMDTLVKR----NSV---  194 (441)
Q Consensus       172 ~~~~~~--------------------------------------------------~~~~~~li~~~~~~----g~~---  194 (441)
                      .....+                                                  ...|...+......    ++.   
T Consensus       174 ~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~  253 (530)
T 2ooe_A          174 YEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLI  253 (530)
T ss_dssp             HHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHH
T ss_pred             HHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhH
Confidence            000000                                                  01222222111111    111   


Q ss_pred             -HHHHHHHHHhhhCCCCcHHHHHHHHHHHHh-------cCCHH-------HHHHHHHHHhhCCCCCCHhhHHHHHHHHHh
Q 036107          195 -AHAYKVFLKFKDCISLSSQIFDVLIHGWCK-------TRKSD-------YAQKAMKEMFQHGFSPDGVSYTCFIEHYCR  259 (441)
Q Consensus       195 -~~a~~~~~~~~~~~~~~~~~~~~li~~~~~-------~~~~~-------~a~~~~~~m~~~g~~p~~~~~~~li~~~~~  259 (441)
                       +++..+|++.-...+-+...|..+...+.+       .|+++       +|..+|++..+.-.+-+...|..+...+.+
T Consensus       254 ~~~a~~~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~  333 (530)
T 2ooe_A          254 TKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES  333 (530)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence             234444544422223345555555555554       46655       667777766642122245666666666677


Q ss_pred             cCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC-HHHHHHHHHHHHhcCccchH
Q 036107          260 EKDFRKVDYTLKEMQEKGCKPS--VITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTD-TSFYSSLIFILSKAVRFLIY  336 (441)
Q Consensus       260 ~g~~~~a~~l~~~m~~~g~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~-~~~~~~li~~~~~~g~~~~~  336 (441)
                      .|++++|..+|++..+.  .|+  ...|...+..+.+.|++++|.++|+...+..  |+ ...                |
T Consensus       334 ~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~--~~~~~~----------------~  393 (530)
T 2ooe_A          334 RMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA--RTRHHV----------------Y  393 (530)
T ss_dssp             TTCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCT--TCCTHH----------------H
T ss_pred             cCCHHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhcc--CCchHH----------------H
Confidence            77777777777776663  332  2356666666666777777777777766542  21 111                1


Q ss_pred             HH-HHHHHHhcCChhHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCC-CCCC--HHHHHH
Q 036107          337 NT-MISSACVRSEEGNALKLRQKIEEDSCKP-DCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKG-IVPQ--ESTHKM  411 (441)
Q Consensus       337 ~~-li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~t~~~li~~~~~~g~~~~a~~~~~~~~~m~~~~-~~p~--~~~~~~  411 (441)
                      .. ....+...|+.++|..+|++..+.  .| +...|..++..+.+.|+.++|..   ++++....+ ..|+  ...|..
T Consensus       394 ~~~a~~~~~~~~~~~~A~~~~e~al~~--~p~~~~~~~~~~~~~~~~g~~~~Ar~---~~~~al~~~~~~~~~~~~lw~~  468 (530)
T 2ooe_A          394 VTAALMEYYCSKDKSVAFKIFELGLKK--YGDIPEYVLAYIDYLSHLNEDNNTRV---LFERVLTSGSLPPEKSGEIWAR  468 (530)
T ss_dssp             HHHHHHHHHHTCCHHHHHHHHHHHHHH--HTTCHHHHHHHHHHHTTTTCHHHHHH---HHHHHHHSCCSCGGGCHHHHHH
T ss_pred             HHHHHHHHHHcCChhHHHHHHHHHHHH--CCCCHHHHHHHHHHHHhCCCHhhHHH---HHHHHHhccCCCHHHHHHHHHH
Confidence            11 111234689999999999988764  34 46788888888999999999988   455554442 3332  457888


Q ss_pred             HHHHHHhcCCccHHHHHHHHHHHHhh
Q 036107          412 LAEELEKKSLGNAKERIDELLTHATE  437 (441)
Q Consensus       412 ll~~~~~~g~~~~a~~~~~~m~~~~~  437 (441)
                      .++...+.|+.+.+.++.+.+.+...
T Consensus       469 ~~~~e~~~G~~~~~~~~~~r~~~~~p  494 (530)
T 2ooe_A          469 FLAFESNIGDLASILKVEKRRFTAFR  494 (530)
T ss_dssp             HHHHHHHSSCHHHHHHHHHHHHHHTH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence            88888899999999999988766543

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.27  E-value=2.6e-09  Score=100.20  Aligned_cols=249  Identities=8%  Similarity=-0.000  Sum_probs=193.3

Q ss_pred             HHHHHHHHHHHHcCCChhHHHHHHHHHHHhcCCCccHHHHHHHHhhcCHHHHHHHHHHHHhcCC-HHHHHHHHHHhhhCC
Q 036107          130 PETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNS-VAHAYKVFLKFKDCI  208 (441)
Q Consensus       130 ~~~y~~li~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~-~~~a~~~~~~~~~~~  208 (441)
                      ...|+.+-..+.+.|++++|++.+++..+..+.              +..+|+.+-..+.+.|+ +++|+..|++.-...
T Consensus        97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~--------------~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~  162 (382)
T 2h6f_A           97 RDVYDYFRAVLQRDERSERAFKLTRDAIELNAA--------------NYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ  162 (382)
T ss_dssp             HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTT--------------CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHCCChHHHHHHHHHHHHhCcc--------------CHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC
Confidence            457888888999999999999999999986633              67899999999999997 999999999986555


Q ss_pred             CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 036107          209 SLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIV  288 (441)
Q Consensus       209 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~l  288 (441)
                      +-+...|+.+-.++.+.|++++|+..|++..+.. +-+...|..+-.++.+.|++++|+..|+++.+.... +...|+.+
T Consensus       163 P~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~-~~~a~~~l  240 (382)
T 2h6f_A          163 PKNYQVWHHRRVLVEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR-NNSVWNQR  240 (382)
T ss_dssp             TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-CHHHHHHH
Confidence            6688899999999999999999999999999753 236788999999999999999999999999987543 78899999


Q ss_pred             HHHHHh-cCCHHHH-----HHHHHHHhhCCCCCCHHHHHHHHHHHHhcCccchHHHHHHHHHhcC--ChhHHHHHHHHHH
Q 036107          289 MHALEK-AKQIYEA-----LKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRS--EEGNALKLRQKIE  360 (441)
Q Consensus       289 l~~~~~-~~~~~~a-----~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~~~li~~~~~~g--~~~~a~~~~~~m~  360 (441)
                      ..++.+ .|..++|     ...|++..+.  .|+..               ..|+.+...+...|  +.++|++.+.++ 
T Consensus       241 g~~l~~l~~~~~eA~~~~el~~~~~Al~l--~P~~~---------------~a~~~l~~ll~~~g~~~~~~a~~~~~~~-  302 (382)
T 2h6f_A          241 YFVISNTTGYNDRAVLEREVQYTLEMIKL--VPHNE---------------SAWNYLKGILQDRGLSKYPNLLNQLLDL-  302 (382)
T ss_dssp             HHHHHHTTCSCSHHHHHHHHHHHHHHHHH--STTCH---------------HHHHHHHHHHTTTCGGGCHHHHHHHHHH-
T ss_pred             HHHHHHhcCcchHHHHHHHHHHHHHHHHH--CCCCH---------------HHHHHHHHHHHccCccchHHHHHHHHHh-
Confidence            999999 6665777     4788887774  33322               22777777777777  688999999887 


Q ss_pred             HcCCCCCHHHHHHHHHHHHhcC---------ChhhHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHH
Q 036107          361 EDSCKPDCETHARSLKMCCHKK---------RMKDGMLVLNLMREMLSKGIVPQE-STHKMLAEELE  417 (441)
Q Consensus       361 ~~g~~p~~~t~~~li~~~~~~g---------~~~~a~~~~~~~~~m~~~~~~p~~-~~~~~ll~~~~  417 (441)
                      + .-..+...+..+...|.+.|         ..++|.+   +++++. ..+.|.. ..|..+...+.
T Consensus       303 ~-~~p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~---~~~~l~-~~~DP~r~~~w~~~~~~l~  364 (382)
T 2h6f_A          303 Q-PSHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALE---LCEILA-KEKDTIRKEYWRYIGRSLQ  364 (382)
T ss_dssp             T-TTCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHH---HHHHHH-HTTCGGGHHHHHHHHHHHH
T ss_pred             c-cCCCCHHHHHHHHHHHHHHhcccccchHHHHHHHHH---HHHHHH-HHhCchhHHHHHHHHHHHH
Confidence            2 22345567888888888874         2466655   555541 1244543 35555555554

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=99.27  E-value=1.8e-10  Score=104.59  Aligned_cols=246  Identities=11%  Similarity=0.001  Sum_probs=158.8

Q ss_pred             CHHHHHHHHHHHHcCCChhHHHHHHHHHHHhcCCCc--cHHHHHHHHhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 036107          129 TPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYV--SLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKD  206 (441)
Q Consensus       129 ~~~~y~~li~~~~~~~~~~~a~~l~~~m~~~~~~~~--~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~  206 (441)
                      +..+|..+...+...|++++|.++++++.+......  .        ......++..+...+...|++++|...+++...
T Consensus        26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~--------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~   97 (311)
T 3nf1_A           26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHD--------HPDVATMLNILALVYRDQNKYKDAANLLNDALA   97 (311)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSS--------SHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCC--------CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            456899999999999999999999999887410000  0        011457788899999999999999999988632


Q ss_pred             -------C-CCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC------CCCC-CHhhHHHHHHHHHhcCCHHHHHHHHH
Q 036107          207 -------C-ISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQH------GFSP-DGVSYTCFIEHYCREKDFRKVDYTLK  271 (441)
Q Consensus       207 -------~-~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~------g~~p-~~~~~~~li~~~~~~g~~~~a~~l~~  271 (441)
                             . .+....++..+...|...|++++|.+.|++..+.      +-.| ....+..+...+...|++++|.+.++
T Consensus        98 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~  177 (311)
T 3nf1_A           98 IREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQ  177 (311)
T ss_dssp             HHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred             HHHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence                   1 2345667888999999999999999999998763      2222 34678888899999999999999999


Q ss_pred             HHHHc------CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC-------CCCCCHHHHHHHHHHHHhcCccchHH
Q 036107          272 EMQEK------GCKP-SVITCTIVMHALEKAKQIYEALKVYEKMKSD-------DCLTDTSFYSSLIFILSKAVRFLIYN  337 (441)
Q Consensus       272 ~m~~~------g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~-------g~~~~~~~~~~li~~~~~~g~~~~~~  337 (441)
                      +..+.      +..| ...++..+...|.+.|++++|...++++.+.       ...+...........         +.
T Consensus       178 ~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~---------~~  248 (311)
T 3nf1_A          178 RALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEE---------RE  248 (311)
T ss_dssp             HHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHH---------HH
T ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHH---------HH
Confidence            98764      2233 3467888999999999999999999998763       122222111111111         22


Q ss_pred             HHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHH
Q 036107          338 TMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLN  392 (441)
Q Consensus       338 ~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~  392 (441)
                      .+...+...+.+.++...++...... ..+..++..+...|.+.|++++|.++++
T Consensus       249 ~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~  302 (311)
T 3nf1_A          249 ECKGKQKDGTSFGEYGGWYKACKVDS-PTVTTTLKNLGALYRRQGKFEAAETLEE  302 (311)
T ss_dssp             HC-------CCSCCCC---------C-HHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred             HhcCchhhHHHHHHHHHHHhhcCCCC-chHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence            23333344444555555554443211 1223345556666666666666655443

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=99.26  E-value=1e-10  Score=106.34  Aligned_cols=242  Identities=10%  Similarity=0.012  Sum_probs=169.8

Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHhhh--------CCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC------C
Q 036107          177 DTRAMSVLMDTLVKRNSVAHAYKVFLKFKD--------CISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQH------G  242 (441)
Q Consensus       177 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~--------~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~------g  242 (441)
                      +..++..+...+...|++++|..+|++...        ..+.....+..+...|...|++++|...|++....      +
T Consensus        26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  105 (311)
T 3nf1_A           26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK  105 (311)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence            467888899999999999999999988733        23445667888999999999999999999988753      1


Q ss_pred             C-CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHc------CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC---
Q 036107          243 F-SPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEK------GCKP-SVITCTIVMHALEKAKQIYEALKVYEKMKSD---  311 (441)
Q Consensus       243 ~-~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~------g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~---  311 (441)
                      - .....++..+...+...|++++|...+++..+.      +..| ....+..+...+...|++++|.++|++..+.   
T Consensus       106 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~  185 (311)
T 3nf1_A          106 DHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQT  185 (311)
T ss_dssp             TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred             CChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence            1 234567888999999999999999999998764      2223 3567888899999999999999999998764   


Q ss_pred             ---CCCCCHHHHHHHHHHHHhcCccchHHHHHHHHHhcCChhHHHHHHHHHHHc-------CCCCCHHHH-------HHH
Q 036107          312 ---DCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEED-------SCKPDCETH-------ARS  374 (441)
Q Consensus       312 ---g~~~~~~~~~~li~~~~~~g~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-------g~~p~~~t~-------~~l  374 (441)
                         +..|...               .++..+...|...|++++|.+.+++..+.       ...+.....       ..+
T Consensus       186 ~~~~~~~~~~---------------~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (311)
T 3nf1_A          186 KLGPDDPNVA---------------KTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREEC  250 (311)
T ss_dssp             TSCTTCHHHH---------------HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC
T ss_pred             HhCCCCHHHH---------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHh
Confidence               2222221               34788889999999999999999998753       122222222       222


Q ss_pred             HHHHHhcCChhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhh
Q 036107          375 LKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEKKSLGNAKERIDELLTHATE  437 (441)
Q Consensus       375 i~~~~~~g~~~~a~~~~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~  437 (441)
                      ...+...+.+.++..   .+..... ....+..++..+...|.+.|++++|.+.++...+..+
T Consensus       251 ~~~~~~~~~~~~a~~---~~~~~~~-~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~  309 (311)
T 3nf1_A          251 KGKQKDGTSFGEYGG---WYKACKV-DSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRK  309 (311)
T ss_dssp             -------CCSCCCC-------------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC
T ss_pred             cCchhhHHHHHHHHH---HHhhcCC-CCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhh
Confidence            223333444555433   2222211 1223455888999999999999999999998766543

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.26  E-value=1.8e-09  Score=90.16  Aligned_cols=167  Identities=13%  Similarity=0.029  Sum_probs=146.0

Q ss_pred             CHHHHHHHHHHHHcCCChhHHHHHHHHHHHhcCCCccHHHHHHHHhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCC
Q 036107          129 TPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCI  208 (441)
Q Consensus       129 ~~~~y~~li~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~  208 (441)
                      +...|..+-..+.+.|++++|++.|++..+..|.              +..++..+...+.+.|++++|...+.......
T Consensus         4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~--------------~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~   69 (184)
T 3vtx_A            4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPN--------------NVETLLKLGKTYMDIGLPNDAIESLKKFVVLD   69 (184)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT--------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--------------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence            6778999999999999999999999999886533              77889999999999999999999999986655


Q ss_pred             CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 036107          209 SLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIV  288 (441)
Q Consensus       209 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~l  288 (441)
                      +.+...+..+...+...++++.|.+.+.+..... +-+...+..+-..+.+.|++++|++.|++..+... -+..+|..+
T Consensus        70 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~l  147 (184)
T 3vtx_A           70 TTSAEAYYILGSANFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKP-GFIRAYQSI  147 (184)
T ss_dssp             CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHH
T ss_pred             chhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcc-hhhhHHHHH
Confidence            6677788888889999999999999999988642 23567888899999999999999999999988643 367889999


Q ss_pred             HHHHHhcCCHHHHHHHHHHHhhC
Q 036107          289 MHALEKAKQIYEALKVYEKMKSD  311 (441)
Q Consensus       289 l~~~~~~~~~~~a~~~~~~m~~~  311 (441)
                      -.+|.+.|++++|.+.|++..+.
T Consensus       148 g~~~~~~g~~~~A~~~~~~al~~  170 (184)
T 3vtx_A          148 GLAYEGKGLRDEAVKYFKKALEK  170 (184)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHCCCHHHHHHHHHHHHhC
Confidence            99999999999999999998875

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=99.23  E-value=1.5e-08  Score=99.76  Aligned_cols=339  Identities=7%  Similarity=-0.031  Sum_probs=201.2

Q ss_pred             CcccccchhhHHHhhhhchhhHHHHHhhhcCchhhHHHHHHHHHhcCCChHHHHHHHhhhhhHhhhhcCCCCCCHHHHHH
Q 036107           56 EDFVIPSLASWVESLKLNEQSRISSHALSEDHETDVDKVSEILRKRYPSPDKVVEALKCFCFTWAKTQTGYMHTPETYNA  135 (441)
Q Consensus        56 ~~~~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~g~~p~~~~y~~  135 (441)
                      ...+..++.. .+.++.+.+..+++.+.+.-  |+...+...++..+.+.|+++.|..+|+..-     ...|+...|..
T Consensus        13 ~~~w~~l~~~-~~~~~~~~a~~~~e~al~~~--P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral-----~~~p~~~lw~~   84 (530)
T 2ooe_A           13 LDAWSILIRE-AQNQPIDKARKTYERLVAQF--PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCL-----MKVLHIDLWKC   84 (530)
T ss_dssp             HHHHHHHHHH-HHSSCHHHHHHHHHHHHTTC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHT-----TTCCCHHHHHH
T ss_pred             HHHHHHHHHH-HHhCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-----hcCCChHHHHH
Confidence            3455555553 56788999999999988754  3333566677777777899999999995332     33478888888


Q ss_pred             HHHHH-HcCCChhHHHH----HHHHHHHhcCCCccHHHHHHHHhhcCHHHHHHHHHHHHh---------cCCHHHHHHHH
Q 036107          136 MVEAL-GKSKKFGLMWE----LVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVK---------RNSVAHAYKVF  201 (441)
Q Consensus       136 li~~~-~~~~~~~~a~~----l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~---------~g~~~~a~~~~  201 (441)
                      .+... ...|+.+.|.+    +|+.....-+..+.           +...|...+....+         .|+++.|..+|
T Consensus        85 ~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~-----------~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y  153 (530)
T 2ooe_A           85 YLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIM-----------SYQIWVDYINFLKGVEAVGSYAENQRITAVRRVY  153 (530)
T ss_dssp             HHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTT-----------CHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHH
T ss_pred             HHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcc-----------cHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHH
Confidence            77533 45677777765    66665543111111           33444444444333         45666666666


Q ss_pred             HHhhhC----------------------------------------------------------CCCc--------HHHH
Q 036107          202 LKFKDC----------------------------------------------------------ISLS--------SQIF  215 (441)
Q Consensus       202 ~~~~~~----------------------------------------------------------~~~~--------~~~~  215 (441)
                      ++.-..                                                          ++|+        ...|
T Consensus       154 ~~al~~P~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w  233 (530)
T 2ooe_A          154 QRGCVNPMINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMW  233 (530)
T ss_dssp             HHHTTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHH
T ss_pred             HHHHhchhhhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHH
Confidence            554321                                                          1111        1122


Q ss_pred             HHHHHHHHhc----CCH----HHHHHHHHHHhhCCCCCCHhhHHHHHHHHHh-------cCCHH-------HHHHHHHHH
Q 036107          216 DVLIHGWCKT----RKS----DYAQKAMKEMFQHGFSPDGVSYTCFIEHYCR-------EKDFR-------KVDYTLKEM  273 (441)
Q Consensus       216 ~~li~~~~~~----~~~----~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~-------~g~~~-------~a~~l~~~m  273 (441)
                      ...+......    ++.    +.+..+|++.... .+-+...|......+.+       .|+++       +|..+|++.
T Consensus       234 ~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~-~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~A  312 (530)
T 2ooe_A          234 KKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLV-LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERA  312 (530)
T ss_dssp             HHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHH
Confidence            2222111110    111    1334444444432 11234455555555553       56665       677777776


Q ss_pred             HHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCccchHHHHHHHHHhcCChhHHH
Q 036107          274 QEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNAL  353 (441)
Q Consensus       274 ~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~~~li~~~~~~g~~~~a~  353 (441)
                      .+.-.+-+...|..+...+.+.|++++|..+|+.+.+.  .|+..+              ..|...+..+.+.|++++|.
T Consensus       313 l~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~--------------~~~~~~~~~~~~~~~~~~A~  376 (530)
T 2ooe_A          313 ISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPT--------------LVYIQYMKFARRAEGIKSGR  376 (530)
T ss_dssp             TTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--SSSCHH--------------HHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCc--cccCch--------------HHHHHHHHHHHHhcCHHHHH
Confidence            65222334667777777777777777777777777764  332111              13777777788888899999


Q ss_pred             HHHHHHHHcCCCCCHHHHHHHHH-HHHhcCChhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCccHHHHHHHHH
Q 036107          354 KLRQKIEEDSCKPDCETHARSLK-MCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEKKSLGNAKERIDELL  432 (441)
Q Consensus       354 ~~~~~m~~~g~~p~~~t~~~li~-~~~~~g~~~~a~~~~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m  432 (441)
                      ++|++..+.. ..+...|..... .+...|+.++|..+++..-+.    .+-+...|..++..+.+.|+.++|..+++..
T Consensus       377 ~~~~~Al~~~-~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~----~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~a  451 (530)
T 2ooe_A          377 MIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKK----YGDIPEYVLAYIDYLSHLNEDNNTRVLFERV  451 (530)
T ss_dssp             HHHHHHHTCT-TCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHH----HTTCHHHHHHHHHHHTTTTCHHHHHHHHHHH
T ss_pred             HHHHHHHhcc-CCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHH----CCCCHHHHHHHHHHHHhCCCHhhHHHHHHHH
Confidence            9999987642 112233322222 233689999998865543331    1235778999999999999999999999987


Q ss_pred             HHH
Q 036107          433 THA  435 (441)
Q Consensus       433 ~~~  435 (441)
                      ...
T Consensus       452 l~~  454 (530)
T 2ooe_A          452 LTS  454 (530)
T ss_dssp             HHS
T ss_pred             Hhc
Confidence            654

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=99.23  E-value=2e-08  Score=91.49  Aligned_cols=230  Identities=9%  Similarity=0.015  Sum_probs=172.8

Q ss_pred             HHHHHHHHHHHcC----CCh----hHHHHHHHHHHHhcCCCccHHHHHHHHhhcCHHHHHHHHHHHH-------hcCCH-
Q 036107          131 ETYNAMVEALGKS----KKF----GLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLV-------KRNSV-  194 (441)
Q Consensus       131 ~~y~~li~~~~~~----~~~----~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~-------~~g~~-  194 (441)
                      ..|...+...-+.    ++.    ++|..+|++.....+.              ++..|..+...+.       +.|++ 
T Consensus         9 ~~W~~yi~~E~~~~~~~~~~~~~~~~a~~~~~~al~~~p~--------------~~~~w~~~~~~~~~~~~~l~~~g~~~   74 (308)
T 2ond_A            9 DMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGH--------------HPDIWYEAAQYLEQSSKLLAEKGDMN   74 (308)
T ss_dssp             HHHHHHHHHHHTCTTCCCCHHHHHHHHHHHHHHHHHHHTT--------------CHHHHHHHHHHHHHHHHHHHHTSCCH
T ss_pred             HHHHHHHHHHHhCcccCCchHHHHHHHHHHHHHHHHHcCC--------------CHHHHHHHHHHHHHhchhhhhccchh
Confidence            4555555554443    233    6788899998885433              6677777777665       45885 


Q ss_pred             ------HHHHHHHHHhhhCC-CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCH-h-hHHHHHHHHHhcCCHHH
Q 036107          195 ------AHAYKVFLKFKDCI-SLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDG-V-SYTCFIEHYCREKDFRK  265 (441)
Q Consensus       195 ------~~a~~~~~~~~~~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~-~-~~~~li~~~~~~g~~~~  265 (441)
                            ++|..+|++.-..+ +-+...|..+...+.+.|++++|.++|++..+  +.|+. . .|..+...+.+.|++++
T Consensus        75 ~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~~  152 (308)
T 2ond_A           75 NAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLA--IEDIDPTLVYIQYMKFARRAEGIKS  152 (308)
T ss_dssp             HHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--SSSSCTHHHHHHHHHHHHHHHCHHH
T ss_pred             hcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHh--ccccCccHHHHHHHHHHHHhcCHHH
Confidence                  89999999886643 44666899999999999999999999999998  45543 3 79999999999999999


Q ss_pred             HHHHHHHHHHcCCCCCHHHHHHHHHHHH-hcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCccchHHHHHHHHH
Q 036107          266 VDYTLKEMQEKGCKPSVITCTIVMHALE-KAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSAC  344 (441)
Q Consensus       266 a~~l~~~m~~~g~~p~~~~~~~ll~~~~-~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~~~li~~~~  344 (441)
                      |..+|++..+... ++...|........ ..|++++|..+|+...+.. +-+..                .|..++..+.
T Consensus       153 A~~~~~~a~~~~p-~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~-p~~~~----------------~~~~~~~~~~  214 (308)
T 2ond_A          153 GRMIFKKAREDAR-TRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPE----------------YVLAYIDYLS  214 (308)
T ss_dssp             HHHHHHHHHTSTT-CCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH-TTCHH----------------HHHHHHHHHH
T ss_pred             HHHHHHHHHhcCC-CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHH----------------HHHHHHHHHH
Confidence            9999999988643 34455554433322 3699999999999987742 11232                3888888899


Q ss_pred             hcCChhHHHHHHHHHHHcC-CCC--CHHHHHHHHHHHHhcCChhhHHHHHHHH
Q 036107          345 VRSEEGNALKLRQKIEEDS-CKP--DCETHARSLKMCCHKKRMKDGMLVLNLM  394 (441)
Q Consensus       345 ~~g~~~~a~~~~~~m~~~g-~~p--~~~t~~~li~~~~~~g~~~~a~~~~~~~  394 (441)
                      +.|++++|..+|++..... +.|  ....|..++....+.|+.+.|..+++..
T Consensus       215 ~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a  267 (308)
T 2ond_A          215 HLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR  267 (308)
T ss_dssp             TTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred             HCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            9999999999999998863 455  3567888888888999999997754433

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.21  E-value=3.4e-09  Score=99.42  Aligned_cols=230  Identities=8%  Similarity=-0.002  Sum_probs=183.0

Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcHHHHHHHHHHHHhcCC-HHHHHHHHHHHhhCCCCCCHhhHHHHHH
Q 036107          177 DTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRK-SDYAQKAMKEMFQHGFSPDGVSYTCFIE  255 (441)
Q Consensus       177 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~-~~~a~~~~~~m~~~g~~p~~~~~~~li~  255 (441)
                      +...|..+-..+.+.|++++|++.|++.-...+-+...|+.+-..+.+.|+ +++|+..|++..+..- -+...|+.+-.
T Consensus        96 ~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P-~~~~a~~~~g~  174 (382)
T 2h6f_A           96 FRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQP-KNYQVWHHRRV  174 (382)
T ss_dssp             HHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCC-CCHHHHHHHHH
Confidence            456777888889999999999999999855556678889999999999997 9999999999988532 26788999999


Q ss_pred             HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCccch
Q 036107          256 HYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLI  335 (441)
Q Consensus       256 ~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~  335 (441)
                      ++...|++++|+..|++..+..-. +...|..+-.++.+.|++++|...|+++.+.... +...                
T Consensus       175 ~~~~~g~~~eAl~~~~kal~ldP~-~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~-~~~a----------------  236 (382)
T 2h6f_A          175 LVEWLRDPSQELEFIADILNQDAK-NYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR-NNSV----------------  236 (382)
T ss_dssp             HHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHH----------------
T ss_pred             HHHHccCHHHHHHHHHHHHHhCcc-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-CHHH----------------
Confidence            999999999999999999887543 7889999999999999999999999999986422 3333                


Q ss_pred             HHHHHHHHHh-cCChhHH-----HHHHHHHHHcCCCCC-HHHHHHHHHHHHhcC--ChhhHHHHHHHHHHHHHCCCCCCH
Q 036107          336 YNTMISSACV-RSEEGNA-----LKLRQKIEEDSCKPD-CETHARSLKMCCHKK--RMKDGMLVLNLMREMLSKGIVPQE  406 (441)
Q Consensus       336 ~~~li~~~~~-~g~~~~a-----~~~~~~m~~~g~~p~-~~t~~~li~~~~~~g--~~~~a~~~~~~~~~m~~~~~~p~~  406 (441)
                      |+.+-..+.. .|..++|     ++.|++..+.  .|+ ...|..+...+...|  ++++|.+   .+.++  ..-..+.
T Consensus       237 ~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l--~P~~~~a~~~l~~ll~~~g~~~~~~a~~---~~~~~--~~~p~~~  309 (382)
T 2h6f_A          237 WNQRYFVISNTTGYNDRAVLEREVQYTLEMIKL--VPHNESAWNYLKGILQDRGLSKYPNLLN---QLLDL--QPSHSSP  309 (382)
T ss_dssp             HHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHH--STTCHHHHHHHHHHHTTTCGGGCHHHHH---HHHHH--TTTCCCH
T ss_pred             HHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHccCccchHHHHH---HHHHh--ccCCCCH
Confidence            7777777777 5665777     4778887754  454 457777777788877  5777755   55554  3334466


Q ss_pred             HHHHHHHHHHHhcC---------CccHHHHHHHHH
Q 036107          407 STHKMLAEELEKKS---------LGNAKERIDELL  432 (441)
Q Consensus       407 ~~~~~ll~~~~~~g---------~~~~a~~~~~~m  432 (441)
                      ..+..+...|.+.|         ..++|.++++.+
T Consensus       310 ~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l  344 (382)
T 2h6f_A          310 YLIAFLVDIYEDMLENQCDNKEDILNKALELCEIL  344 (382)
T ss_dssp             HHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHH
Confidence            78889999998864         258899999887

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=99.20  E-value=1.6e-10  Score=109.35  Aligned_cols=303  Identities=12%  Similarity=-0.024  Sum_probs=210.3

Q ss_pred             HHhcCCChHHHHHHHhhhhhHhhhhcCCCCCC--HHHHHHHHHHHHcCCChhHHHHHHHHHHHhcCCCccHHHHHHHHhh
Q 036107           98 LRKRYPSPDKVVEALKCFCFTWAKTQTGYMHT--PETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRR  175 (441)
Q Consensus        98 l~~~~~~~g~~~~A~~~~~~~~~~~~~g~~p~--~~~y~~li~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~  175 (441)
                      ....+.+.|++++|+..|+..... .++ .|.  ..+|..+...+...|++++|.+.+++...........        .
T Consensus        15 ~g~~~~~~g~~~~A~~~~~~al~~-~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~--------~   84 (406)
T 3sf4_A           15 EGERLCKSGDCRAGVSFFEAAVQV-GTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQ--------L   84 (406)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHH-CCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH--------H
T ss_pred             HHHHHHHhccHHHHHHHHHHHHhc-Ccc-cHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccc--------H
Confidence            445566678888888888644433 111 111  3578888899999999999999999876542111100        0


Q ss_pred             cCHHHHHHHHHHHHhcCCHHHHHHHHHHhhh-----C-CCCcHHHHHHHHHHHHhcCC--------------------HH
Q 036107          176 LDTRAMSVLMDTLVKRNSVAHAYKVFLKFKD-----C-ISLSSQIFDVLIHGWCKTRK--------------------SD  229 (441)
Q Consensus       176 ~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~-----~-~~~~~~~~~~li~~~~~~~~--------------------~~  229 (441)
                      ....++..+...+...|++++|...+++...     + ......++..+-..|...|+                    ++
T Consensus        85 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~  164 (406)
T 3sf4_A           85 GEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQ  164 (406)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHH
Confidence            1356788888999999999999999987622     1 11124478888889999999                    99


Q ss_pred             HHHHHHHHHhhC----CCCC-CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHhcCCHH
Q 036107          230 YAQKAMKEMFQH----GFSP-DGVSYTCFIEHYCREKDFRKVDYTLKEMQEK----GCKP-SVITCTIVMHALEKAKQIY  299 (441)
Q Consensus       230 ~a~~~~~~m~~~----g~~p-~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~----g~~p-~~~~~~~ll~~~~~~~~~~  299 (441)
                      +|.+.+++....    +-.| ...++..+...+...|++++|...+++..+.    +..+ ...++..+...|...|+++
T Consensus       165 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~  244 (406)
T 3sf4_A          165 AAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFE  244 (406)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChH
Confidence            999998876542    2112 2357888889999999999999999987653    1111 1347888899999999999


Q ss_pred             HHHHHHHHHhhCCC-CCCHHHHHHHHHHHHhcCccchHHHHHHHHHhcCChhHHHHHHHHHHHcCC-CCC----HHHHHH
Q 036107          300 EALKVYEKMKSDDC-LTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSC-KPD----CETHAR  373 (441)
Q Consensus       300 ~a~~~~~~m~~~g~-~~~~~~~~~li~~~~~~g~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~-~p~----~~t~~~  373 (441)
                      +|...+++..+... ..+...   ..         .++..+...|...|++++|.+.+++..+..- .++    ..++..
T Consensus       245 ~A~~~~~~al~~~~~~~~~~~---~~---------~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~  312 (406)
T 3sf4_A          245 TASEYYKKTLLLARQLKDRAV---EA---------QSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWS  312 (406)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHH---HH---------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCcCchH---HH---------HHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHH
Confidence            99999998764211 011110   00         3477888899999999999999998764211 122    457778


Q ss_pred             HHHHHHhcCChhhHHHHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHhcCCc
Q 036107          374 SLKMCCHKKRMKDGMLVLNLMREMLSK-GIVP-QESTHKMLAEELEKKSLG  422 (441)
Q Consensus       374 li~~~~~~g~~~~a~~~~~~~~~m~~~-~~~p-~~~~~~~ll~~~~~~g~~  422 (441)
                      +...|...|++++|.+.++...++... +-.+ ...++..+...+...|+.
T Consensus       313 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~  363 (406)
T 3sf4_A          313 LGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLS  363 (406)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHh
Confidence            888999999999998876655544332 3222 244777778888777765

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=99.19  E-value=3e-10  Score=107.88  Aligned_cols=272  Identities=9%  Similarity=-0.051  Sum_probs=196.4

Q ss_pred             HHHhcCCChHHHHHHHhhhhhHhhhhcCCCCC-CH----HHHHHHHHHHHcCCChhHHHHHHHHHHHhcCCCccHHHHHH
Q 036107           97 ILRKRYPSPDKVVEALKCFCFTWAKTQTGYMH-TP----ETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMST  171 (441)
Q Consensus        97 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~g~~p-~~----~~y~~li~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~  171 (441)
                      .+...+...|++++|+..|+.....     .| +.    ..|..+-..+...|++++|.+.+++...........     
T Consensus        53 ~~g~~~~~~g~~~~A~~~~~~al~~-----~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~-----  122 (411)
T 4a1s_A           53 LEGERLCNAGDCRAGVAFFQAAIQA-----GTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDR-----  122 (411)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHH-----CCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCH-----
T ss_pred             HHHHHHHHhCcHHHHHHHHHHHHHh-----cccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCc-----
Confidence            3446677789999999999755443     12 23    578888999999999999999999887642111100     


Q ss_pred             HHhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhh-----C-CCCcHHHHHHHHHHHHhcCC-----------------H
Q 036107          172 VMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKD-----C-ISLSSQIFDVLIHGWCKTRK-----------------S  228 (441)
Q Consensus       172 ~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~-----~-~~~~~~~~~~li~~~~~~~~-----------------~  228 (441)
                         .....++..+-..+...|++++|...+++...     + ......++..+...|...|+                 +
T Consensus       123 ---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~  199 (411)
T 4a1s_A          123 ---LGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEAL  199 (411)
T ss_dssp             ---HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHH
T ss_pred             ---hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHH
Confidence               11457788889999999999999999987622     1 22345578888899999999                 9


Q ss_pred             HHHHHHHHHHhhC----CC-CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHHhcCCH
Q 036107          229 DYAQKAMKEMFQH----GF-SPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGC-KPS----VITCTIVMHALEKAKQI  298 (441)
Q Consensus       229 ~~a~~~~~~m~~~----g~-~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~-~p~----~~~~~~ll~~~~~~~~~  298 (441)
                      ++|.+.+++..+.    +- .....++..+...+...|++++|...+++..+... .++    ..++..+...|...|++
T Consensus       200 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~  279 (411)
T 4a1s_A          200 TRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQF  279 (411)
T ss_dssp             HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCH
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCH
Confidence            9999998886542    11 11235788888999999999999999998765311 012    34788889999999999


Q ss_pred             HHHHHHHHHHhhCCCC-CCHHHHHHHHHHHHhcCccchHHHHHHHHHhcCChhHHHHHHHHHHHc----CCC-CCHHHHH
Q 036107          299 YEALKVYEKMKSDDCL-TDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEED----SCK-PDCETHA  372 (441)
Q Consensus       299 ~~a~~~~~~m~~~g~~-~~~~~~~~li~~~~~~g~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~-p~~~t~~  372 (441)
                      ++|...+++..+.... .+...   ..         .++..+...|...|++++|...+++..+.    +-. ....++.
T Consensus       280 ~~A~~~~~~al~~~~~~~~~~~---~~---------~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  347 (411)
T 4a1s_A          280 EDAAEHYKRTLALAVELGEREV---EA---------QSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACW  347 (411)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHH---HH---------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCHHH---HH---------HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHH
Confidence            9999999987653110 11110   00         33778888899999999999999987642    111 1134777


Q ss_pred             HHHHHHHhcCChhhHHHHHHH
Q 036107          373 RSLKMCCHKKRMKDGMLVLNL  393 (441)
Q Consensus       373 ~li~~~~~~g~~~~a~~~~~~  393 (441)
                      .+...|...|++++|.+.++.
T Consensus       348 ~la~~~~~~g~~~~A~~~~~~  368 (411)
T 4a1s_A          348 SLGNAHSAIGGHERALKYAEQ  368 (411)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHhccHHHHHHHHHH
Confidence            888899999999999886553

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=99.18  E-value=5.5e-08  Score=88.59  Aligned_cols=219  Identities=10%  Similarity=0.038  Sum_probs=169.2

Q ss_pred             HHHHHHHHHhhhCCCCcHHHHHHHHHHHH-------hcCCH-------HHHHHHHHHHhhCCCCC-CHhhHHHHHHHHHh
Q 036107          195 AHAYKVFLKFKDCISLSSQIFDVLIHGWC-------KTRKS-------DYAQKAMKEMFQHGFSP-DGVSYTCFIEHYCR  259 (441)
Q Consensus       195 ~~a~~~~~~~~~~~~~~~~~~~~li~~~~-------~~~~~-------~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~  259 (441)
                      ++|..+|++.-...+-+...|..+...+.       +.|++       ++|..+|++..+. +.| +...|..+...+.+
T Consensus        33 ~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~-~~p~~~~~~~~~~~~~~~  111 (308)
T 2ond_A           33 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAIST-LLKKNMLLYFAYADYEES  111 (308)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTT-TTTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHH-hCcccHHHHHHHHHHHHh
Confidence            68888998875545667778888887775       35886       8999999999873 234 45689999999999


Q ss_pred             cCCHHHHHHHHHHHHHcCCCCC-HH-HHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCccchHH
Q 036107          260 EKDFRKVDYTLKEMQEKGCKPS-VI-TCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYN  337 (441)
Q Consensus       260 ~g~~~~a~~l~~~m~~~g~~p~-~~-~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~~  337 (441)
                      .|++++|.++|++..+.  .|+ .. .|..+...+.+.|++++|..+|++..+.+. .+...                |.
T Consensus       112 ~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p-~~~~~----------------~~  172 (308)
T 2ond_A          112 RMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDAR-TRHHV----------------YV  172 (308)
T ss_dssp             TTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTT-CCTHH----------------HH
T ss_pred             cCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC-CCHHH----------------HH
Confidence            99999999999999884  443 33 899999999999999999999999988642 22222                33


Q ss_pred             HHHHH-HHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHC-CCCC--CHHHHHHHH
Q 036107          338 TMISS-ACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSK-GIVP--QESTHKMLA  413 (441)
Q Consensus       338 ~li~~-~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~~~~m~~~-~~~p--~~~~~~~ll  413 (441)
                      ..... +...|+.++|.++|++..+.. .-+...|..++..+.+.|++++|..   ++++.... .+.|  ....|..++
T Consensus       173 ~~a~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~---~~~~al~~~~l~p~~~~~l~~~~~  248 (308)
T 2ond_A          173 TAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRV---LFERVLTSGSLPPEKSGEIWARFL  248 (308)
T ss_dssp             HHHHHHHHTSCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHH---HHHHHHHSSSSCGGGCHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHH---HHHHHHhccCCCHHHHHHHHHHHH
Confidence            22222 223699999999999987642 2256778888999999999999977   56666655 3455  466899999


Q ss_pred             HHHHhcCCccHHHHHHHHHHHHhh
Q 036107          414 EELEKKSLGNAKERIDELLTHATE  437 (441)
Q Consensus       414 ~~~~~~g~~~~a~~~~~~m~~~~~  437 (441)
                      ..+.+.|+.+.|..+++...+...
T Consensus       249 ~~~~~~g~~~~a~~~~~~a~~~~p  272 (308)
T 2ond_A          249 AFESNIGDLASILKVEKRRFTAFR  272 (308)
T ss_dssp             HHHHHHSCHHHHHHHHHHHHHHTT
T ss_pred             HHHHHcCCHHHHHHHHHHHHHHcc
Confidence            999999999999999998776543

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.16  E-value=3.5e-09  Score=87.98  Aligned_cols=166  Identities=12%  Similarity=0.007  Sum_probs=141.1

Q ss_pred             HHHHHHHHHHHHcCCChhHHHHHHHHHHHhcCCCccHHHHHHHHhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCC
Q 036107          130 PETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCIS  209 (441)
Q Consensus       130 ~~~y~~li~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~  209 (441)
                      ...|..+...+...|++++|.+.++++....+.              +..++..+...+...|++++|.+.++......+
T Consensus         8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~   73 (186)
T 3as5_A            8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDADAF--------------DVDVALHLGIAYVKTGAVDRGTELLERSLADAP   73 (186)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSC--------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred             hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcc--------------ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence            356777888889999999999999988764321              678888999999999999999999998855455


Q ss_pred             CcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 036107          210 LSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVM  289 (441)
Q Consensus       210 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll  289 (441)
                      .+...+..+...+...|++++|.+.|++..+.. +.+...+..+...+...|++++|...+++..+.. +.+...+..+.
T Consensus        74 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la  151 (186)
T 3as5_A           74 DNVKVATVLGLTYVQVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIA  151 (186)
T ss_dssp             TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHH
Confidence            677889999999999999999999999988752 3467788889999999999999999999988764 34678899999


Q ss_pred             HHHHhcCCHHHHHHHHHHHhhC
Q 036107          290 HALEKAKQIYEALKVYEKMKSD  311 (441)
Q Consensus       290 ~~~~~~~~~~~a~~~~~~m~~~  311 (441)
                      ..+...|++++|...++...+.
T Consensus       152 ~~~~~~~~~~~A~~~~~~~~~~  173 (186)
T 3as5_A          152 FSYEQMGRHEEALPHFKKANEL  173 (186)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHc
Confidence            9999999999999999988763

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.14  E-value=1.4e-08  Score=84.70  Aligned_cols=167  Identities=11%  Similarity=0.006  Sum_probs=129.7

Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHH
Q 036107          177 DTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEH  256 (441)
Q Consensus       177 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~  256 (441)
                      ++.+|..+-..+.+.|++++|++.|++.-+..+-+...+..+...|.+.|++++|...+....... +-+...+..+...
T Consensus         4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~   82 (184)
T 3vtx_A            4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGSA   82 (184)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHHH
Confidence            567888888889999999999999988744445577788888888899999999999888887643 2345667777778


Q ss_pred             HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCccchH
Q 036107          257 YCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIY  336 (441)
Q Consensus       257 ~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~  336 (441)
                      +...++++.+...+.+..+... -+...+..+-..+.+.|++++|.+.|++..+.. +.+..                .|
T Consensus        83 ~~~~~~~~~a~~~~~~a~~~~~-~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~----------------~~  144 (184)
T 3vtx_A           83 NFMIDEKQAAIDALQRAIALNT-VYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIR----------------AY  144 (184)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHH----------------HH
T ss_pred             HHHcCCHHHHHHHHHHHHHhCc-cchHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhh----------------HH
Confidence            8888889999998888876533 367778888888888999999999988887753 11232                37


Q ss_pred             HHHHHHHHhcCChhHHHHHHHHHHHc
Q 036107          337 NTMISSACVRSEEGNALKLRQKIEED  362 (441)
Q Consensus       337 ~~li~~~~~~g~~~~a~~~~~~m~~~  362 (441)
                      ..+-..|.+.|++++|++.|++..+.
T Consensus       145 ~~lg~~~~~~g~~~~A~~~~~~al~~  170 (184)
T 3vtx_A          145 QSIGLAYEGKGLRDEAVKYFKKALEK  170 (184)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHhC
Confidence            77778888888889998888887653

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=99.13  E-value=5.6e-10  Score=102.26  Aligned_cols=273  Identities=12%  Similarity=-0.021  Sum_probs=191.8

Q ss_pred             HhcCCChHHHHHHHhhhhhHhhhhcCCCCCC--HHHHHHHHHHHHcCCChhHHHHHHHHHHHhcCCCccHHHHHHHHhhc
Q 036107           99 RKRYPSPDKVVEALKCFCFTWAKTQTGYMHT--PETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRL  176 (441)
Q Consensus        99 ~~~~~~~g~~~~A~~~~~~~~~~~~~g~~p~--~~~y~~li~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~  176 (441)
                      ...+...|++++|+..|+..... .++ .|.  ...|..+...+...|++++|.+.+++...........        ..
T Consensus        12 g~~~~~~g~~~~A~~~~~~al~~-~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~--------~~   81 (338)
T 3ro2_A           12 GERLCKSGDCRAGVSFFEAAVQV-GTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQ--------LG   81 (338)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHH-CCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH--------HH
T ss_pred             HHHHHHhccHHHHHHHHHHHHhh-Ccc-cHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccccc--------HH
Confidence            34556678899999988754443 111 111  4678899999999999999999999876542111100        01


Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHhhh---CC---CCcHHHHHHHHHHHHhcCC--------------------HHH
Q 036107          177 DTRAMSVLMDTLVKRNSVAHAYKVFLKFKD---CI---SLSSQIFDVLIHGWCKTRK--------------------SDY  230 (441)
Q Consensus       177 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~---~~---~~~~~~~~~li~~~~~~~~--------------------~~~  230 (441)
                      ...++..+...+...|++++|.+.+++...   ..   .....++..+...|...|+                    +++
T Consensus        82 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~  161 (338)
T 3ro2_A           82 EAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQA  161 (338)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHH
Confidence            356788888999999999999999988622   11   1124478888889999999                    999


Q ss_pred             HHHHHHHHhhC----CCC-CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCC-CCHHHHHHHHHHHHhcCCHHH
Q 036107          231 AQKAMKEMFQH----GFS-PDGVSYTCFIEHYCREKDFRKVDYTLKEMQEK----GCK-PSVITCTIVMHALEKAKQIYE  300 (441)
Q Consensus       231 a~~~~~~m~~~----g~~-p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~----g~~-p~~~~~~~ll~~~~~~~~~~~  300 (441)
                      |.+.+++....    +-. ....++..+...+...|++++|...+++..+.    +.. ....++..+...+...|++++
T Consensus       162 A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~  241 (338)
T 3ro2_A          162 AVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFET  241 (338)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHH
Confidence            99998876532    111 12457888888999999999999999987643    111 123478888899999999999


Q ss_pred             HHHHHHHHhhCCC-CCCHHHHHHHHHHHHhcCccchHHHHHHHHHhcCChhHHHHHHHHHHHc----CCC-CCHHHHHHH
Q 036107          301 ALKVYEKMKSDDC-LTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEED----SCK-PDCETHARS  374 (441)
Q Consensus       301 a~~~~~~m~~~g~-~~~~~~~~~li~~~~~~g~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~-p~~~t~~~l  374 (441)
                      |...+++..+... ..+...   ..         .++..+...|...|++++|...+++..+.    +-. ....++..+
T Consensus       242 A~~~~~~al~~~~~~~~~~~---~~---------~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l  309 (338)
T 3ro2_A          242 ASEYYKKTLLLARQLKDRAV---EA---------QSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSL  309 (338)
T ss_dssp             HHHHHHHHHHHHHHTTCHHH---HH---------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhcchhH---HH---------HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHH
Confidence            9999998764211 111110   00         33777888899999999999999887642    111 113467788


Q ss_pred             HHHHHhcCChhhHHHHHHH
Q 036107          375 LKMCCHKKRMKDGMLVLNL  393 (441)
Q Consensus       375 i~~~~~~g~~~~a~~~~~~  393 (441)
                      ...+.+.|++++|.+.++.
T Consensus       310 a~~~~~~g~~~~A~~~~~~  328 (338)
T 3ro2_A          310 GNAYTALGNHDQAMHFAEK  328 (338)
T ss_dssp             HHHHHHHTCHHHHHHHHHH
T ss_pred             HHHHHHcCChHHHHHHHHH
Confidence            8899999999999775443

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.12  E-value=1.6e-08  Score=83.88  Aligned_cols=166  Identities=12%  Similarity=0.009  Sum_probs=140.3

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHH
Q 036107          178 TRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHY  257 (441)
Q Consensus       178 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~  257 (441)
                      ...+..+...+...|++++|.+.++.+....+.+...+..+...+...|++++|.+.+++..+.. +.+...+..+...+
T Consensus         8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~   86 (186)
T 3as5_A            8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTY   86 (186)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence            45677778889999999999999999866556678889999999999999999999999998752 34678888999999


Q ss_pred             HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCccchHH
Q 036107          258 CREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYN  337 (441)
Q Consensus       258 ~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~~  337 (441)
                      ...|++++|.+.+++..+.. +.+...+..+...+...|++++|...+++..+.. +.+..                .+.
T Consensus        87 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~----------------~~~  148 (186)
T 3as5_A           87 VQVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGK----------------VHR  148 (186)
T ss_dssp             HHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHH----------------HHH
T ss_pred             HHhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchH----------------HHH
Confidence            99999999999999998764 3477889999999999999999999999988754 22332                378


Q ss_pred             HHHHHHHhcCChhHHHHHHHHHHHc
Q 036107          338 TMISSACVRSEEGNALKLRQKIEED  362 (441)
Q Consensus       338 ~li~~~~~~g~~~~a~~~~~~m~~~  362 (441)
                      .+...+...|++++|.+.+++..+.
T Consensus       149 ~la~~~~~~~~~~~A~~~~~~~~~~  173 (186)
T 3as5_A          149 AIAFSYEQMGRHEEALPHFKKANEL  173 (186)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHc
Confidence            8888899999999999999987653

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.11  E-value=5.9e-09  Score=101.12  Aligned_cols=210  Identities=12%  Similarity=0.017  Sum_probs=171.0

Q ss_pred             hhHHHHHHHHHHHhcCCCccHHHHHHHHhhcCHHHHHHHHHHHHhcCCH-HHHHHHHHHhhhCCCCcHHHHHHHHHHHHh
Q 036107          146 FGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSV-AHAYKVFLKFKDCISLSSQIFDVLIHGWCK  224 (441)
Q Consensus       146 ~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~-~~a~~~~~~~~~~~~~~~~~~~~li~~~~~  224 (441)
                      ++++.+.+++.....   +           .+...+..+-..+...|++ ++|++.|++.-...+.+...|..+-..|.+
T Consensus        84 ~~~al~~l~~~~~~~---~-----------~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~  149 (474)
T 4abn_A           84 MEKTLQQMEEVLGSA---Q-----------VEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWK  149 (474)
T ss_dssp             HHHHHHHHHHHHTTC---C-----------CCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhccC---c-----------hhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Confidence            566666777655533   1           1678888999999999999 999999998855445568889999999999


Q ss_pred             cCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhc---------CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 036107          225 TRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCRE---------KDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKA  295 (441)
Q Consensus       225 ~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~---------g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~  295 (441)
                      .|++++|.+.|++..+.  .|+...+..+-..+...         |++++|.+.|++..+... -+...|..+..+|...
T Consensus       150 ~g~~~~A~~~~~~al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~  226 (474)
T 4abn_A          150 KGDVTSAHTCFSGALTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDV-LDGRSWYILGNAYLSL  226 (474)
T ss_dssp             HTCHHHHHHHHHHHHTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHH
Confidence            99999999999999885  47788899999999999         999999999999988643 3688899999999998


Q ss_pred             --------CCHHHHHHHHHHHhhCCCC--CCHHHHHHHHHHHHhcCccchHHHHHHHHHhcCChhHHHHHHHHHHHcCCC
Q 036107          296 --------KQIYEALKVYEKMKSDDCL--TDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCK  365 (441)
Q Consensus       296 --------~~~~~a~~~~~~m~~~g~~--~~~~~~~~li~~~~~~g~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~  365 (441)
                              |++++|...|++..+..-.  -+..                .|..+-..|...|++++|++.|++..+.. .
T Consensus       227 ~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~----------------~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p  289 (474)
T 4abn_A          227 YFNTGQNPKISQQALSAYAQAEKVDRKASSNPD----------------LHLNRATLHKYEESYGEALEGFSQAAALD-P  289 (474)
T ss_dssp             HHHTTCCHHHHHHHHHHHHHHHHHCGGGGGCHH----------------HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-T
T ss_pred             HHhhccccchHHHHHHHHHHHHHhCCCcccCHH----------------HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-C
Confidence                    9999999999999885310  1333                38888889999999999999999987653 2


Q ss_pred             CCHHHHHHHHHHHHhcCChhhHHH
Q 036107          366 PDCETHARSLKMCCHKKRMKDGML  389 (441)
Q Consensus       366 p~~~t~~~li~~~~~~g~~~~a~~  389 (441)
                      -+...+..+...+...|++++|.+
T Consensus       290 ~~~~a~~~l~~~~~~lg~~~eAi~  313 (474)
T 4abn_A          290 AWPEPQQREQQLLEFLSRLTSLLE  313 (474)
T ss_dssp             TCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHH
Confidence            244567778888888888888754

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=99.09  E-value=8.1e-09  Score=97.19  Aligned_cols=236  Identities=7%  Similarity=-0.034  Sum_probs=169.9

Q ss_pred             HHHHHHhcCCHHHHHHHHHHhhh---CCCC---cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC----C--CCCCHhhHH
Q 036107          184 LMDTLVKRNSVAHAYKVFLKFKD---CISL---SSQIFDVLIHGWCKTRKSDYAQKAMKEMFQH----G--FSPDGVSYT  251 (441)
Q Consensus       184 li~~~~~~g~~~~a~~~~~~~~~---~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----g--~~p~~~~~~  251 (441)
                      .-..+...|++++|.+.|++...   ....   ...++..+-..|...|++++|...+++..+.    +  ......+++
T Consensus       109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  188 (383)
T 3ulq_A          109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS  188 (383)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred             HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence            55567789999999999988732   1221   3467888889999999999999999887642    1  111245788


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC----CCCCCHHHHHH
Q 036107          252 CFIEHYCREKDFRKVDYTLKEMQEK----GCKP-SVITCTIVMHALEKAKQIYEALKVYEKMKSD----DCLTDTSFYSS  322 (441)
Q Consensus       252 ~li~~~~~~g~~~~a~~l~~~m~~~----g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~----g~~~~~~~~~~  322 (441)
                      .+-..|...|++++|...|++..+.    +-.+ ...++..+-..|...|++++|.+.|++..+.    +..|+..    
T Consensus       189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~----  264 (383)
T 3ulq_A          189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLP----  264 (383)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHH----
T ss_pred             HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHH----
Confidence            8889999999999999999987643    2111 1357888999999999999999999988762    3223332    


Q ss_pred             HHHHHHhcCccchHHHHHHHHHhcCChhHHHHHHHHHHHc----CCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHHH
Q 036107          323 LIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEED----SCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREML  398 (441)
Q Consensus       323 li~~~~~~g~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~~~~m~  398 (441)
                                 .++..+...|.+.|++++|.+.+++..+.    +-......+..+-..+...|+.+...+.+..+++  
T Consensus       265 -----------~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~--  331 (383)
T 3ulq_A          265 -----------QAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLES--  331 (383)
T ss_dssp             -----------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHH--
T ss_pred             -----------HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH--
Confidence                       34888888999999999999999887542    1111122355666677788884333333445555  


Q ss_pred             HCCCCCC-HHHHHHHHHHHHhcCCccHHHHHHHHHHHHhh
Q 036107          399 SKGIVPQ-ESTHKMLAEELEKKSLGNAKERIDELLTHATE  437 (441)
Q Consensus       399 ~~~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~  437 (441)
                       .+..|+ ...+..+...|.+.|++++|.+.++......+
T Consensus       332 -~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~  370 (383)
T 3ulq_A          332 -KMLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQVRQ  370 (383)
T ss_dssp             -TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHT
T ss_pred             -CcCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence             233333 34777888999999999999999998776554

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=99.08  E-value=1e-07  Score=89.18  Aligned_cols=284  Identities=8%  Similarity=-0.072  Sum_probs=191.0

Q ss_pred             HHHHHHHHcCCChhHHHHHHHHHHHhcCCCccHHHHHHHHhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhh----CCC
Q 036107          134 NAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKD----CIS  209 (441)
Q Consensus       134 ~~li~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~----~~~  209 (441)
                      ...-..+...|++++|.+.+++.....+.... ..        -..++..+-..+...|++++|.+.+++...    .-.
T Consensus        18 ~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~--------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~   88 (373)
T 1hz4_A           18 ALRAQVAINDGNPDEAERLAKLALEELPPGWF-YS--------RIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDV   88 (373)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCH-HH--------HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHcCCCCch-hH--------HHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCc
Confidence            33344566789999999999998774421110 00        123566677788889999999999987622    111


Q ss_pred             C--cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC----CCC--C-CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-
Q 036107          210 L--SSQIFDVLIHGWCKTRKSDYAQKAMKEMFQH----GFS--P-DGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCK-  279 (441)
Q Consensus       210 ~--~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----g~~--p-~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~-  279 (441)
                      +  ...++..+-..+...|++++|.+.+++....    |..  | ....+..+-..+...|++++|...+++..+.... 
T Consensus        89 ~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  168 (373)
T 1hz4_A           89 WHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSY  168 (373)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTS
T ss_pred             HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcc
Confidence            1  1234566778889999999999999887642    222  2 2345667778899999999999999998654221 


Q ss_pred             ---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCH-HHHHHHHHHHHhcCccchHHHHHHHHHhcCChhHHHHH
Q 036107          280 ---PSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDT-SFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKL  355 (441)
Q Consensus       280 ---p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~-~~~~~li~~~~~~g~~~~~~~li~~~~~~g~~~~a~~~  355 (441)
                         ....++..+...+...|++++|...+++.....-.++. ..+...           .....+..+...|+.++|...
T Consensus       169 ~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~g~~~~A~~~  237 (373)
T 1hz4_A          169 QPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISN-----------ANKVRVIYWQMTGDKAAAANW  237 (373)
T ss_dssp             CGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHH-----------HHHHHHHHHHHTTCHHHHHHH
T ss_pred             CcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHH-----------HHHHHHHHHHHCCCHHHHHHH
Confidence               13467888888999999999999999988653111111 110000           011233457789999999999


Q ss_pred             HHHHHHcCCCCC---HHHHHHHHHHHHhcCChhhHHHHHHHHHHHHH-CCCCCCH-HHHHHHHHHHHhcCCccHHHHHHH
Q 036107          356 RQKIEEDSCKPD---CETHARSLKMCCHKKRMKDGMLVLNLMREMLS-KGIVPQE-STHKMLAEELEKKSLGNAKERIDE  430 (441)
Q Consensus       356 ~~~m~~~g~~p~---~~t~~~li~~~~~~g~~~~a~~~~~~~~~m~~-~~~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~  430 (441)
                      +++.......+.   ...+..+...+...|++++|...++....... .|..++. ..+..+..++...|+.++|...++
T Consensus       238 ~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~  317 (373)
T 1hz4_A          238 LRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLL  317 (373)
T ss_dssp             HHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred             HHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence            988765332211   23466777888999999999886664433322 3333333 266777788899999999999988


Q ss_pred             HHHHHhh
Q 036107          431 LLTHATE  437 (441)
Q Consensus       431 ~m~~~~~  437 (441)
                      ......+
T Consensus       318 ~al~~~~  324 (373)
T 1hz4_A          318 DALKLAN  324 (373)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHhc
Confidence            8665443

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=99.04  E-value=7.1e-08  Score=90.54  Aligned_cols=317  Identities=9%  Similarity=0.003  Sum_probs=201.4

Q ss_pred             HHHHHHHhcC--CChHHHHHHHhhhhhHhhhhcCCC--CCCHHHHHHHHHHHH--cCCChhHHH---------HHHHHHH
Q 036107           93 KVSEILRKRY--PSPDKVVEALKCFCFTWAKTQTGY--MHTPETYNAMVEALG--KSKKFGLMW---------ELVKEID  157 (441)
Q Consensus        93 ~~~~~l~~~~--~~~g~~~~A~~~~~~~~~~~~~g~--~p~~~~y~~li~~~~--~~~~~~~a~---------~l~~~m~  157 (441)
                      .|.+.|..+|  .+..++++|.++++..... ...+  .++...|-.++..-.  -.+.+..+.         +.++.+.
T Consensus        11 ~v~~~l~~wy~~i~~~~~~~A~~l~~~i~~~-~~~~~~~~~~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~i~   89 (378)
T 3q15_A           11 RVGVKINEWYKMIRQFSVPDAEILKAEVEQD-IQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELLETIE   89 (378)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-GGGBCCCHHHHHHHHHHHHHHHHHHHTCCC--------CHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCHHHHHHHHHHHHHH-HHHhcccHHHHHHHHHHHHHHHHHHhhcCcccccccccchHHHHHHHh
Confidence            6777777777  7778888888888744332 1122  223344444443311  012222222         6666655


Q ss_pred             HhcCCCccHHHHHHHHhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhh---CCC---CcHHHHHHHHHHHHhcCCHHHH
Q 036107          158 ELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKD---CIS---LSSQIFDVLIHGWCKTRKSDYA  231 (441)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~---~~~---~~~~~~~~li~~~~~~~~~~~a  231 (441)
                      ... ...  +...      ....+-..-..+...|++++|...|++...   ...   ....++..+-..|...|+++.|
T Consensus        90 ~~~-~~~--~~~l------~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A  160 (378)
T 3q15_A           90 TPQ-KKL--TGLL------KYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVS  160 (378)
T ss_dssp             GGG-HHH--HHHH------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             ccC-CCC--ccHH------HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHH
Confidence            422 000  0000      111223344456788999999999988732   111   2345678888999999999999


Q ss_pred             HHHHHHHhhC----C-CCC-CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHhcCCHHH
Q 036107          232 QKAMKEMFQH----G-FSP-DGVSYTCFIEHYCREKDFRKVDYTLKEMQEK----GCKP-SVITCTIVMHALEKAKQIYE  300 (441)
Q Consensus       232 ~~~~~~m~~~----g-~~p-~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~----g~~p-~~~~~~~ll~~~~~~~~~~~  300 (441)
                      ...+++..+.    + ..+ ...+++.+-..|...|++++|.+.|++..+.    +-.+ ...++..+-..|...|++++
T Consensus       161 ~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~  240 (378)
T 3q15_A          161 MYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQM  240 (378)
T ss_dssp             HHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred             HHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHH
Confidence            9999887642    1 111 2457888889999999999999999987653    2211 24578888899999999999


Q ss_pred             HHHHHHHHhhCC---CCCCHHHHHHHHHHHHhcCccchHHHHHHHHHhcCChhHHHHHHHHHHHcCC---CCCH-HHHHH
Q 036107          301 ALKVYEKMKSDD---CLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSC---KPDC-ETHAR  373 (441)
Q Consensus       301 a~~~~~~m~~~g---~~~~~~~~~~li~~~~~~g~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~---~p~~-~t~~~  373 (441)
                      |...|++..+..   ..|...               .++..+...|.+.|++++|...+++..+..-   .|.. ..+..
T Consensus       241 A~~~~~~al~~~~~~~~~~~~---------------~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  305 (378)
T 3q15_A          241 AVEHFQKAAKVSREKVPDLLP---------------KVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLF  305 (378)
T ss_dssp             HHHHHHHHHHHHHHHCGGGHH---------------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhCChhHH---------------HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            999999887610   122221               3377888889999999999999999875322   2222 34444


Q ss_pred             HHHHHHhcCChhhHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCccHHHHHHHHHHHHhh
Q 036107          374 SLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQ-ESTHKMLAEELEKKSLGNAKERIDELLTHATE  437 (441)
Q Consensus       374 li~~~~~~g~~~~a~~~~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~  437 (441)
                      +-..+...++.+...+.+..+++   .+..|+ ...+..+...|.+.|++++|.+.++......+
T Consensus       306 l~~ly~~~~~~~~~~~al~~~~~---~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~  367 (378)
T 3q15_A          306 LQAVYKETVDERKIHDLLSYFEK---KNLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLKAQE  367 (378)
T ss_dssp             HHHHHSSSCCHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhCCCcHHHHHHHHHHHHh---CCChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence            55555566773333332334444   333333 34677888899999999999999998765543

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.03  E-value=1e-08  Score=99.47  Aligned_cols=214  Identities=7%  Similarity=-0.010  Sum_probs=171.1

Q ss_pred             CHHHHHHHHHHhhhCCCCcHHHHHHHHHHHHhcCCH-HHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHH
Q 036107          193 SVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKS-DYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLK  271 (441)
Q Consensus       193 ~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~-~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~l~~  271 (441)
                      .++++.+.++......+.+...+..+-..|...|++ ++|.+.|++..+.. +-+...|..+-..|.+.|++++|.+.|+
T Consensus        83 ~~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~  161 (474)
T 4abn_A           83 EMEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCFS  161 (474)
T ss_dssp             HHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            466777777776555556888899999999999999 99999999998743 2247899999999999999999999999


Q ss_pred             HHHHcCCCCCHHHHHHHHHHHHhc---------CCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCccchHHHHHHH
Q 036107          272 EMQEKGCKPSVITCTIVMHALEKA---------KQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISS  342 (441)
Q Consensus       272 ~m~~~g~~p~~~~~~~ll~~~~~~---------~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~~~li~~  342 (441)
                      +..+..  |+...+..+-..+...         |++++|.+.|++..+... -+...                |..+...
T Consensus       162 ~al~~~--p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~----------------~~~lg~~  222 (474)
T 4abn_A          162 GALTHC--KNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDV-LDGRS----------------WYILGNA  222 (474)
T ss_dssp             HHHTTC--CCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCT-TCHHH----------------HHHHHHH
T ss_pred             HHHhhC--CCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCC-CCHHH----------------HHHHHHH
Confidence            998764  6778899999999999         999999999999988531 23333                7777777


Q ss_pred             HHhc--------CChhHHHHHHHHHHHcCCCC----CHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCCCCHHHHH
Q 036107          343 ACVR--------SEEGNALKLRQKIEEDSCKP----DCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHK  410 (441)
Q Consensus       343 ~~~~--------g~~~~a~~~~~~m~~~g~~p----~~~t~~~li~~~~~~g~~~~a~~~~~~~~~m~~~~~~p~~~~~~  410 (441)
                      |...        |++++|++.|++..+.  .|    +...|..+-..|...|++++|.+.++...+   .. +-+...+.
T Consensus       223 ~~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~---l~-p~~~~a~~  296 (474)
T 4abn_A          223 YLSLYFNTGQNPKISQQALSAYAQAEKV--DRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAA---LD-PAWPEPQQ  296 (474)
T ss_dssp             HHHHHHHTTCCHHHHHHHHHHHHHHHHH--CGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HC-TTCHHHHH
T ss_pred             HHHHHHhhccccchHHHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hC-CCCHHHHH
Confidence            7777        8899999999998875  44    778899999999999999999875544333   21 23456788


Q ss_pred             HHHHHHHhcCCccHHHHHHHHH
Q 036107          411 MLAEELEKKSLGNAKERIDELL  432 (441)
Q Consensus       411 ~ll~~~~~~g~~~~a~~~~~~m  432 (441)
                      .+...+...|++++|.+.+..+
T Consensus       297 ~l~~~~~~lg~~~eAi~~~~~~  318 (474)
T 4abn_A          297 REQQLLEFLSRLTSLLESKGKT  318 (474)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTTC
T ss_pred             HHHHHHHHHHHHHHHHHHhccc
Confidence            8888888889888888655443

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=99.03  E-value=9.8e-09  Score=91.52  Aligned_cols=230  Identities=10%  Similarity=0.010  Sum_probs=155.9

Q ss_pred             HhcCCHHHHHHHHHHhhh--------CCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC------CC-CCCHhhHHHH
Q 036107          189 VKRNSVAHAYKVFLKFKD--------CISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQH------GF-SPDGVSYTCF  253 (441)
Q Consensus       189 ~~~g~~~~a~~~~~~~~~--------~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~------g~-~p~~~~~~~l  253 (441)
                      ...|++++|++.|++...        ..+....++..+...|...|++++|...|++..+.      +- +....+|..+
T Consensus        12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l   91 (283)
T 3edt_B           12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL   91 (283)
T ss_dssp             -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence            346777777777766521        22335667888999999999999999999988753      11 2235688999


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHc------C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC------CCCCCHHHH
Q 036107          254 IEHYCREKDFRKVDYTLKEMQEK------G-CKPSVITCTIVMHALEKAKQIYEALKVYEKMKSD------DCLTDTSFY  320 (441)
Q Consensus       254 i~~~~~~g~~~~a~~l~~~m~~~------g-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~------g~~~~~~~~  320 (441)
                      ...+...|++++|.+.|++..+.      . .+....++..+...|...|++++|...|++..+.      +-.|+..  
T Consensus        92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~--  169 (283)
T 3edt_B           92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVA--  169 (283)
T ss_dssp             HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHH--
T ss_pred             HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHH--
Confidence            99999999999999999998654      1 1234678888999999999999999999988764      1122211  


Q ss_pred             HHHHHHHHhcCccchHHHHHHHHHhcCChhHHHHHHHHHHHc-------CCCCCHHHHHHHHH-HHHhcCChhhHHHHHH
Q 036107          321 SSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEED-------SCKPDCETHARSLK-MCCHKKRMKDGMLVLN  392 (441)
Q Consensus       321 ~~li~~~~~~g~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-------g~~p~~~t~~~li~-~~~~~g~~~~a~~~~~  392 (441)
                                   .++..+...|...|++++|++.+++..+.       ...+....+...+. .....+....+.. +.
T Consensus       170 -------------~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~  235 (283)
T 3edt_B          170 -------------KTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAP-YG  235 (283)
T ss_dssp             -------------HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------
T ss_pred             -------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHH-HH
Confidence                         34788888999999999999999988653       22333333333333 3333344444433 22


Q ss_pred             HHHHHHHC-C-CCC-CHHHHHHHHHHHHhcCCccHHHHHHHHHHH
Q 036107          393 LMREMLSK-G-IVP-QESTHKMLAEELEKKSLGNAKERIDELLTH  434 (441)
Q Consensus       393 ~~~~m~~~-~-~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~  434 (441)
                      ........ + ..| ...++..+...|.+.|++++|.++++...+
T Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  280 (283)
T 3edt_B          236 EYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASR  280 (283)
T ss_dssp             -------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred             HHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            22222121 1 112 244788899999999999999999987654

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.01  E-value=2.3e-08  Score=101.36  Aligned_cols=168  Identities=10%  Similarity=-0.015  Sum_probs=144.5

Q ss_pred             CCCC-HHHHHHHHHHHHcCCChhHHHHHHHHHHHhcCCCccHHHHHHHHhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 036107          126 YMHT-PETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKF  204 (441)
Q Consensus       126 ~~p~-~~~y~~li~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~  204 (441)
                      -.|+ ..+|+.+-..+.+.|++++|++.|++..+..+.              +..++..+-.+|.+.|++++|++.|++.
T Consensus         4 s~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~--------------~~~a~~nLg~~l~~~g~~~eA~~~~~~A   69 (723)
T 4gyw_A            4 SCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPE--------------FAAAHSNLASVLQQQGKLQEALMHYKEA   69 (723)
T ss_dssp             --CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC--------------CHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--------------CHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            3454 578999999999999999999999999886533              6789999999999999999999999987


Q ss_pred             hhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC-CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH
Q 036107          205 KDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSP-DGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVI  283 (441)
Q Consensus       205 ~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~  283 (441)
                      -+-.+-+...|..+-.+|.+.|++++|.+.|++..+.  .| +...|+.+-..+.+.|++++|++.|++..+..- -+..
T Consensus        70 l~l~P~~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l--~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P-~~~~  146 (723)
T 4gyw_A           70 IRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQI--NPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKP-DFPD  146 (723)
T ss_dssp             HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-CCHH
T ss_pred             HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CChH
Confidence            5444556788999999999999999999999998874  34 467899999999999999999999999988642 2578


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 036107          284 TCTIVMHALEKAKQIYEALKVYEKMKS  310 (441)
Q Consensus       284 ~~~~ll~~~~~~~~~~~a~~~~~~m~~  310 (441)
                      .|..+..++...|++++|.+.+++..+
T Consensus       147 a~~~L~~~l~~~g~~~~A~~~~~kal~  173 (723)
T 4gyw_A          147 AYCNLAHCLQIVCDWTDYDERMKKLVS  173 (723)
T ss_dssp             HHHHHHHHHHHTTCCTTHHHHHHHHHH
T ss_pred             HHhhhhhHHHhcccHHHHHHHHHHHHH
Confidence            899999999999999999988887654

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=98.99  E-value=2.2e-07  Score=86.79  Aligned_cols=304  Identities=8%  Similarity=-0.020  Sum_probs=198.5

Q ss_pred             hcCCChHHHHHHHhhhhhHhhhhcCCCCCCH----HHHHHHHHHHHcCCChhHHHHHHHHHHHhcCCCccHHHHHHHHhh
Q 036107          100 KRYPSPDKVVEALKCFCFTWAKTQTGYMHTP----ETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRR  175 (441)
Q Consensus       100 ~~~~~~g~~~~A~~~~~~~~~~~~~g~~p~~----~~y~~li~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~  175 (441)
                      ..+...|++++|+..++......  . ..+.    .+++.+-..+...|++++|.+.+++.....+......        
T Consensus        22 ~~~~~~g~~~~A~~~~~~al~~~--~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~--------   90 (373)
T 1hz4_A           22 QVAINDGNPDEAERLAKLALEEL--P-PGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWH--------   90 (373)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHTC--C-TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHH--------
T ss_pred             HHHHHCCCHHHHHHHHHHHHHcC--C-CCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHH--------
Confidence            34456678888888875433221  1 1122    2566677788889999999999998776431111100        


Q ss_pred             cCHHHHHHHHHHHHhcCCHHHHHHHHHHhhh-----CCC--C-cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC----CC
Q 036107          176 LDTRAMSVLMDTLVKRNSVAHAYKVFLKFKD-----CIS--L-SSQIFDVLIHGWCKTRKSDYAQKAMKEMFQH----GF  243 (441)
Q Consensus       176 ~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~-----~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----g~  243 (441)
                      ....++..+-..+...|++++|.+.+++.-.     +..  | ....+..+-..+...|++++|...+++....    |.
T Consensus        91 ~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  170 (373)
T 1hz4_A           91 YALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQP  170 (373)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCG
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCc
Confidence            0124466777888999999999999987621     221  2 3445677788899999999999999987653    21


Q ss_pred             CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC--HHHHH----HHHHHHHhcCCHHHHHHHHHHHhhCCCCCCH
Q 036107          244 SPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPS--VITCT----IVMHALEKAKQIYEALKVYEKMKSDDCLTDT  317 (441)
Q Consensus       244 ~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~--~~~~~----~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~  317 (441)
                      .....+|..+-..+...|++++|...+++..+..-.++  .....    .....+...|++++|...+++..+....+..
T Consensus       171 ~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~  250 (373)
T 1hz4_A          171 QQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNH  250 (373)
T ss_dssp             GGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCG
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcch
Confidence            11235677888889999999999999999865421111  11111    2334577999999999999988764322111


Q ss_pred             HHHHHHHHHHHhcCccchHHHHHHHHHhcCChhHHHHHHHHHHHc----CCCCCH-HHHHHHHHHHHhcCChhhHHHHHH
Q 036107          318 SFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEED----SCKPDC-ETHARSLKMCCHKKRMKDGMLVLN  392 (441)
Q Consensus       318 ~~~~~li~~~~~~g~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~p~~-~t~~~li~~~~~~g~~~~a~~~~~  392 (441)
                      ...             ..+..+...+...|++++|...+++....    |..++. ..+..+-.++...|+.++|...++
T Consensus       251 ~~~-------------~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~  317 (373)
T 1hz4_A          251 FLQ-------------GQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLL  317 (373)
T ss_dssp             GGH-------------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred             hhH-------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence            100             12566778888999999999999887532    222223 255666778889999999988666


Q ss_pred             HHHHHHH-CCCC----CCHHHHHHHHHHHHhcCCccHHHH
Q 036107          393 LMREMLS-KGIV----PQESTHKMLAEELEKKSLGNAKER  427 (441)
Q Consensus       393 ~~~~m~~-~~~~----p~~~~~~~ll~~~~~~g~~~~a~~  427 (441)
                      ....+.. .|..    ........+++.+......+++..
T Consensus       318 ~al~~~~~~g~~~~~~~~g~~~~~ll~~~~~~~~~~~~~~  357 (373)
T 1hz4_A          318 DALKLANRTGFISHFVIEGEAMAQQLRQLIQLNTLPELEQ  357 (373)
T ss_dssp             HHHHHHHHHCCCHHHHTTHHHHHHHHHHHHHTTCSCHHHH
T ss_pred             HHHHHhccccHHHHHHHccHHHHHHHHHHHhCCCCchHHH
Confidence            4433322 2332    122345667777888887755543

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=98.98  E-value=4.6e-08  Score=91.99  Aligned_cols=240  Identities=6%  Similarity=-0.075  Sum_probs=172.3

Q ss_pred             HHHHHHcCCChhHHHHHHHHHHHhcCCCccHHHHHHHHhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhh---CC----
Q 036107          136 MVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKD---CI----  208 (441)
Q Consensus       136 li~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~---~~----  208 (441)
                      .-..+...|++++|.+.|++........++..        ....++..+-..+...|++++|...+++...   ..    
T Consensus       109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~--------~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~  180 (383)
T 3ulq_A          109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRI--------EKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYN  180 (383)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHH--------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTH
T ss_pred             HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHH--------HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccch
Confidence            44556788999999999999887531222110        0346788889999999999999999987622   11    


Q ss_pred             CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC----CCCC-CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHc----CC-
Q 036107          209 SLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQH----GFSP-DGVSYTCFIEHYCREKDFRKVDYTLKEMQEK----GC-  278 (441)
Q Consensus       209 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----g~~p-~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~----g~-  278 (441)
                      .....+++.+-..|...|++++|.+.|++..+.    +-.+ ...++..+-..|...|++++|...|++..+.    +. 
T Consensus       181 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~  260 (383)
T 3ulq_A          181 IRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNIL  260 (383)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCG
T ss_pred             HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccc
Confidence            123457888889999999999999999888642    1111 1247888999999999999999999998662    33 


Q ss_pred             CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC-CCHHHHHHHHHHHHhcCccchHHHHHHHHHhcCC---hhHHHH
Q 036107          279 KPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCL-TDTSFYSSLIFILSKAVRFLIYNTMISSACVRSE---EGNALK  354 (441)
Q Consensus       279 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~-~~~~~~~~li~~~~~~g~~~~~~~li~~~~~~g~---~~~a~~  354 (441)
                      +....++..+...|.+.|++++|...+++..+..-. .+....             ..++.+-..|...|+   .++|+.
T Consensus       261 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~-------------~~~~~l~~~~~~~~~~~~~~~al~  327 (383)
T 3ulq_A          261 PSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYL-------------SEFEFLKSLYLSGPDEEAIQGFFD  327 (383)
T ss_dssp             GGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHH-------------HHHHHHHHHHTSSCCHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHH-------------HHHHHHHHHHhCCCcHHHHHHHHH
Confidence            445678899999999999999999999987653110 111110             114556677777887   677777


Q ss_pred             HHHHHHHcCCCCC-HHHHHHHHHHHHhcCChhhHHHHHHHHHHHHH
Q 036107          355 LRQKIEEDSCKPD-CETHARSLKMCCHKKRMKDGMLVLNLMREMLS  399 (441)
Q Consensus       355 ~~~~m~~~g~~p~-~~t~~~li~~~~~~g~~~~a~~~~~~~~~m~~  399 (441)
                      ++++.   +..|+ ...+..+-..|...|++++|.+.++...++.+
T Consensus       328 ~~~~~---~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~  370 (383)
T 3ulq_A          328 FLESK---MLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQVRQ  370 (383)
T ss_dssp             HHHHT---TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHT
T ss_pred             HHHHC---cCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence            77665   33333 34667788899999999999887665555443

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=98.98  E-value=1.1e-07  Score=91.97  Aligned_cols=334  Identities=11%  Similarity=-0.068  Sum_probs=177.6

Q ss_pred             CcccccchhhHHHhhhhchhhHHHHHhhhc-------CchhhHHHHHHHHHhcCCChHHHHHHHhhhhhHhhhhc---CC
Q 036107           56 EDFVIPSLASWVESLKLNEQSRISSHALSE-------DHETDVDKVSEILRKRYPSPDKVVEALKCFCFTWAKTQ---TG  125 (441)
Q Consensus        56 ~~~~~~~l~~~~~~~~~~~~~~i~~~~~~~-------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~g  125 (441)
                      ...|+.+-......|+.++|...+....+.       ...+....++.-+...|...|+.++|+..++.......   ..
T Consensus        51 a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~  130 (472)
T 4g1t_A           51 ATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSP  130 (472)
T ss_dssp             CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCS
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccc
Confidence            344555544555667788887777655432       11222223455566677778888888877763322211   11


Q ss_pred             CCC-CHHHHHHHHHHHHc--CCChhHHHHHHHHHHHhcCCCccHHHHHH-HHh---------------------h-cCHH
Q 036107          126 YMH-TPETYNAMVEALGK--SKKFGLMWELVKEIDELSNGYVSLAAMST-VMR---------------------R-LDTR  179 (441)
Q Consensus       126 ~~p-~~~~y~~li~~~~~--~~~~~~a~~l~~~m~~~~~~~~~~~~~~~-~~~---------------------~-~~~~  179 (441)
                      ..+ ...+|...-.++.+  .+++++|.+.|++..+..|..+....... +..                     . .+..
T Consensus       131 ~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~~  210 (472)
T 4g1t_A          131 YRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQY  210 (472)
T ss_dssp             SCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCHH
T ss_pred             cchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcchH
Confidence            112 34566655444444  34688888888888776544332211111 000                     0 0334


Q ss_pred             HHHHHHHHHHh----cCCHHHHHHHHHHhhhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC-HhhHHHHH
Q 036107          180 AMSVLMDTLVK----RNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPD-GVSYTCFI  254 (441)
Q Consensus       180 ~~~~li~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li  254 (441)
                      ++..+...+.+    .|+.++|.+.+++.....+.+..++..+...|.+.|++++|...|++..+.  .|+ ..+|..+-
T Consensus       211 ~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg  288 (472)
T 4g1t_A          211 LKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEY--IPNNAYLHCQIG  288 (472)
T ss_dssp             HHHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHh--CCChHHHHHHHH
Confidence            44444444433    356667777777664444556667777888888888888888888877763  233 34455444


Q ss_pred             HHHHhc-------------------CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC
Q 036107          255 EHYCRE-------------------KDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLT  315 (441)
Q Consensus       255 ~~~~~~-------------------g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~  315 (441)
                      ..|...                   +.+++|...++...+... .+..++..+-..|...|++++|...|++..+....+
T Consensus       289 ~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~  367 (472)
T 4g1t_A          289 CCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAND-NLFRVCSILASLHALADQYEEAEYYFQKEFSKELTP  367 (472)
T ss_dssp             HHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCT-TTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCH
T ss_pred             HHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCC-chhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCC
Confidence            443321                   224556666666655432 244567778888899999999999999888765433


Q ss_pred             CHHHHHHHHHHHHhcCccchHHHHH-HHHHhcCChhHHHHHHHHHHHcC----------------------C-CCCHHHH
Q 036107          316 DTSFYSSLIFILSKAVRFLIYNTMI-SSACVRSEEGNALKLRQKIEEDS----------------------C-KPDCETH  371 (441)
Q Consensus       316 ~~~~~~~li~~~~~~g~~~~~~~li-~~~~~~g~~~~a~~~~~~m~~~g----------------------~-~p~~~t~  371 (441)
                      ...  ..+            +..+. -.+...|+.++|+..|++..+..                      . ..+..+|
T Consensus       368 ~~~--~~~------------~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~~~~~l~~~~~~~l~~~p~~~~~~  433 (472)
T 4g1t_A          368 VAK--QLL------------HLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKMKDKLQKIAKMRLSKNGADSEAL  433 (472)
T ss_dssp             HHH--HHH------------HHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHHHHHCC-CTTHH
T ss_pred             hHH--HHH------------HHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHhCCCCHHHH
Confidence            221  111            11111 12235566677777666544321                      1 2345678


Q ss_pred             HHHHHHHHhcCChhhHHHHHHHHHHHHHC-CCCCCHHHH
Q 036107          372 ARSLKMCCHKKRMKDGMLVLNLMREMLSK-GIVPQESTH  409 (441)
Q Consensus       372 ~~li~~~~~~g~~~~a~~~~~~~~~m~~~-~~~p~~~~~  409 (441)
                      ..+-..|...|++++|.+   .+++..+. ...|+..+|
T Consensus       434 ~~LG~~~~~~g~~~~A~~---~y~kALe~~~~~p~a~~~  469 (472)
T 4g1t_A          434 HVLAFLQELNEKMQQADE---DSERGLESGSLIPSASSW  469 (472)
T ss_dssp             HHHHHHHHHHHHCC-------------------------
T ss_pred             HHHHHHHHHcCCHHHHHH---HHHHHHhcCCCCCcHhhc
Confidence            888889999999999977   45454433 344555443

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=98.97  E-value=1.7e-08  Score=89.89  Aligned_cols=171  Identities=9%  Similarity=0.042  Sum_probs=134.4

Q ss_pred             CHHHHHHHHHHHHcCCChhHHHHHHHHHHHhc-----CCCccHHHHHHHHhhcCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 036107          129 TPETYNAMVEALGKSKKFGLMWELVKEIDELS-----NGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLK  203 (441)
Q Consensus       129 ~~~~y~~li~~~~~~~~~~~a~~l~~~m~~~~-----~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~  203 (441)
                      ...+|..+-..+...|++++|.+.+++.....     +..+.           ...++..+...+...|++++|.+.|.+
T Consensus        42 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~-----------~~~~~~~l~~~~~~~g~~~~A~~~~~~  110 (283)
T 3edt_B           42 VATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPA-----------VAATLNNLAVLYGKRGKYKEAEPLCKR  110 (283)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHH-----------HHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchH-----------HHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence            45688999999999999999999999988752     11111           467888999999999999999999988


Q ss_pred             hhhC--------CCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC------CCCC-CHhhHHHHHHHHHhcCCHHHHHH
Q 036107          204 FKDC--------ISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQH------GFSP-DGVSYTCFIEHYCREKDFRKVDY  268 (441)
Q Consensus       204 ~~~~--------~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~------g~~p-~~~~~~~li~~~~~~g~~~~a~~  268 (441)
                      ....        .+....++..+...|...|++++|.+.|++..+.      +-.| ...++..+...+...|++++|..
T Consensus       111 al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~  190 (283)
T 3edt_B          111 ALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAET  190 (283)
T ss_dssp             HHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred             HHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence            6321        2345667888999999999999999999998764      1123 35678889999999999999999


Q ss_pred             HHHHHHHc------------------------------------------------CCCCCHHHHHHHHHHHHhcCCHHH
Q 036107          269 TLKEMQEK------------------------------------------------GCKPSVITCTIVMHALEKAKQIYE  300 (441)
Q Consensus       269 l~~~m~~~------------------------------------------------g~~p~~~~~~~ll~~~~~~~~~~~  300 (441)
                      .+++..+.                                                ..+....++..+...|.+.|++++
T Consensus       191 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~  270 (283)
T 3edt_B          191 LYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEA  270 (283)
T ss_dssp             HHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHH
Confidence            99988653                                                112224567778888888899999


Q ss_pred             HHHHHHHHhh
Q 036107          301 ALKVYEKMKS  310 (441)
Q Consensus       301 a~~~~~~m~~  310 (441)
                      |..+|++..+
T Consensus       271 A~~~~~~al~  280 (283)
T 3edt_B          271 AHTLEDCASR  280 (283)
T ss_dssp             HHHHHHHHHT
T ss_pred             HHHHHHHHHH
Confidence            9988887765

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=98.93  E-value=7.2e-08  Score=75.09  Aligned_cols=130  Identities=15%  Similarity=0.090  Sum_probs=111.9

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHh
Q 036107          180 AMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCR  259 (441)
Q Consensus       180 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~  259 (441)
                      .+..+...+...|++++|..+++.+....+.+...+..+...+...|++++|.++|+++.+.+ +.+...+..+...+..
T Consensus         3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~   81 (136)
T 2fo7_A            3 AWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYK   81 (136)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHHH
Confidence            566778889999999999999999855445577888899999999999999999999998753 3456788889999999


Q ss_pred             cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 036107          260 EKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSD  311 (441)
Q Consensus       260 ~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~  311 (441)
                      .|++++|.+.++++.+... .+...+..+...+.+.|++++|...++++.+.
T Consensus        82 ~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~  132 (136)
T 2fo7_A           82 QGDYDEAIEYYQKALELDP-RSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL  132 (136)
T ss_dssp             TTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred             hcCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence            9999999999999987643 36788889999999999999999999998764

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=98.92  E-value=8.5e-08  Score=74.68  Aligned_cols=131  Identities=15%  Similarity=0.120  Sum_probs=112.5

Q ss_pred             HHHHHHHHHHHcCCChhHHHHHHHHHHHhcCCCccHHHHHHHHhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCC
Q 036107          131 ETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISL  210 (441)
Q Consensus       131 ~~y~~li~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~  210 (441)
                      ..|..+...+...|++++|.++++++.+..+.              +...+..+...+...|++++|...++++....+.
T Consensus         2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~--------------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~   67 (136)
T 2fo7_A            2 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPR--------------SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR   67 (136)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT--------------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT
T ss_pred             cHHHHHHHHHHHcCcHHHHHHHHHHHHHcCCc--------------chhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCC
Confidence            35778888899999999999999999875422              5678888899999999999999999998554556


Q ss_pred             cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 036107          211 SSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEK  276 (441)
Q Consensus       211 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~  276 (441)
                      +...+..+...+...|++++|.++|+++.+.. +.+..++..+...+.+.|++++|...++++.+.
T Consensus        68 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~  132 (136)
T 2fo7_A           68 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL  132 (136)
T ss_dssp             CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence            77789999999999999999999999998753 235778889999999999999999999998765

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=98.89  E-value=4.8e-07  Score=84.84  Aligned_cols=235  Identities=10%  Similarity=-0.040  Sum_probs=166.8

Q ss_pred             HHHHcCCChhHHHHHHHHHHHhcCCCccHHHHHHHHhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhh---CC---C-C
Q 036107          138 EALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKD---CI---S-L  210 (441)
Q Consensus       138 ~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~---~~---~-~  210 (441)
                      ..+...|++++|.+.|++........++..        ....++..+-..+...|+++.|...+++...   ..   . .
T Consensus       109 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~--------~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~  180 (378)
T 3q15_A          109 MYEFDQKEYVEAIGYYREAEKELPFVSDDI--------EKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIR  180 (378)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHTTGGGCCCHH--------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHH
T ss_pred             HHHHHHCCHHHHHHHHHHHHHHHhhCCChH--------HHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhh
Confidence            345688999999999999887532222111        1356788889999999999999999987622   11   1 1


Q ss_pred             cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC----CCCC-CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCCC
Q 036107          211 SSQIFDVLIHGWCKTRKSDYAQKAMKEMFQH----GFSP-DGVSYTCFIEHYCREKDFRKVDYTLKEMQEK----GCKPS  281 (441)
Q Consensus       211 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----g~~p-~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~----g~~p~  281 (441)
                      ...+++.+-..|...|++++|.+.|++..+.    |-.+ ...++..+-..|...|++++|...|++..+.    +.+..
T Consensus       181 ~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~  260 (378)
T 3q15_A          181 TIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLL  260 (378)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGH
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhH
Confidence            3557888889999999999999999887652    1111 2357888889999999999999999998761    33334


Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCccchHHHHHHHHHhcCC---hhHHHHHHHH
Q 036107          282 VITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSE---EGNALKLRQK  358 (441)
Q Consensus       282 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~~~li~~~~~~g~---~~~a~~~~~~  358 (441)
                      ..++..+...+.+.|++++|...+++..+..-..+...+.            ..++.+-..|...|+   +.+|+..+++
T Consensus       261 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~------------~~~~~l~~ly~~~~~~~~~~~al~~~~~  328 (378)
T 3q15_A          261 PKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYK------------ELFLFLQAVYKETVDERKIHDLLSYFEK  328 (378)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHH------------HHHHHHHHHHSSSCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHH------------HHHHHHHHHHhCCCcHHHHHHHHHHHHh
Confidence            7788899999999999999999999987632211111110            114555556666777   6777777766


Q ss_pred             HHHcCCCCCH-HHHHHHHHHHHhcCChhhHHHHHHHHH
Q 036107          359 IEEDSCKPDC-ETHARSLKMCCHKKRMKDGMLVLNLMR  395 (441)
Q Consensus       359 m~~~g~~p~~-~t~~~li~~~~~~g~~~~a~~~~~~~~  395 (441)
                         .+..|+. ..+..+-..|...|++++|.+.++...
T Consensus       329 ---~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al  363 (378)
T 3q15_A          329 ---KNLHAYIEACARSAAAVFESSCHFEQAAAFYRKVL  363 (378)
T ss_dssp             ---TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             ---CCChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence               2333332 356677888999999999988655443

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=98.88  E-value=1.2e-07  Score=96.09  Aligned_cols=165  Identities=12%  Similarity=0.039  Sum_probs=140.8

Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC-CHhhHHHHHH
Q 036107          177 DTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSP-DGVSYTCFIE  255 (441)
Q Consensus       177 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~li~  255 (441)
                      +..+++.|-..+.+.|++++|++.|++.-+-.+-+...|+.+-.+|.+.|++++|++.|++..+.  .| +...|..+-.
T Consensus         8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l--~P~~~~a~~nLg~   85 (723)
T 4gyw_A            8 HADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI--SPTFADAYSNMGN   85 (723)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHH
Confidence            56889999999999999999999999885444557888999999999999999999999999874  35 4678999999


Q ss_pred             HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCccch
Q 036107          256 HYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLI  335 (441)
Q Consensus       256 ~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~  335 (441)
                      ++.+.|++++|++.|++..+..- -+...|+.+-.+|.+.|++++|.+.|++..+.  .|+..               ..
T Consensus        86 ~l~~~g~~~~A~~~~~kAl~l~P-~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l--~P~~~---------------~a  147 (723)
T 4gyw_A           86 TLKEMQDVQGALQCYTRAIQINP-AFADAHSNLASIHKDSGNIPEAIASYRTALKL--KPDFP---------------DA  147 (723)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCH---------------HH
T ss_pred             HHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCh---------------HH
Confidence            99999999999999999987643 26789999999999999999999999999875  34322               23


Q ss_pred             HHHHHHHHHhcCChhHHHHHHHHHHH
Q 036107          336 YNTMISSACVRSEEGNALKLRQKIEE  361 (441)
Q Consensus       336 ~~~li~~~~~~g~~~~a~~~~~~m~~  361 (441)
                      |..+...|...|++++|.+.+++..+
T Consensus       148 ~~~L~~~l~~~g~~~~A~~~~~kal~  173 (723)
T 4gyw_A          148 YCNLAHCLQIVCDWTDYDERMKKLVS  173 (723)
T ss_dssp             HHHHHHHHHHTTCCTTHHHHHHHHHH
T ss_pred             HhhhhhHHHhcccHHHHHHHHHHHHH
Confidence            78888888889999999888877653

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=98.82  E-value=1.3e-06  Score=75.37  Aligned_cols=160  Identities=7%  Similarity=-0.097  Sum_probs=118.2

Q ss_pred             cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 036107          211 SSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMH  290 (441)
Q Consensus       211 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~  290 (441)
                      +...+...-..+.+.|++++|.+.|++..+..-.++...+..+-.++...|++++|...|++..+.... +...|..+..
T Consensus         6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~   84 (228)
T 4i17_A            6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYN-LANAYIGKSA   84 (228)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCS-HHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcc-hHHHHHHHHH
Confidence            456677777788888888888888888877543367777777888888899999999999888775432 5677888888


Q ss_pred             HHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCccchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC---
Q 036107          291 ALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPD---  367 (441)
Q Consensus       291 ~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~---  367 (441)
                      .+...|++++|...|++..+.. +.+...+..+...         |..+-..+...|++++|++.|++..+.  .|+   
T Consensus        85 ~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~---------~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~  152 (228)
T 4i17_A           85 AYRDMKNNQEYIATLTEGIKAV-PGNATIEKLYAIY---------YLKEGQKFQQAGNIEKAEENYKHATDV--TSKKWK  152 (228)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHH---------HHHHHHHHHHTTCHHHHHHHHHHHTTS--SCHHHH
T ss_pred             HHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHH---------HHHHhHHHHHhccHHHHHHHHHHHHhc--CCCccc
Confidence            8999999999999999888753 1233333333333         666667788999999999999998864  666   


Q ss_pred             HHHHHHHHHHHHhcCC
Q 036107          368 CETHARSLKMCCHKKR  383 (441)
Q Consensus       368 ~~t~~~li~~~~~~g~  383 (441)
                      ...+..+-..+...|+
T Consensus       153 ~~~~~~l~~~~~~~~~  168 (228)
T 4i17_A          153 TDALYSLGVLFYNNGA  168 (228)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            3456666666665544

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=98.81  E-value=1.2e-06  Score=75.59  Aligned_cols=133  Identities=13%  Similarity=0.013  Sum_probs=112.8

Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCC-CcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHH
Q 036107          177 DTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCIS-LSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIE  255 (441)
Q Consensus       177 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~  255 (441)
                      |+..+...-..+.+.|++++|.+.|+..-...+ ++...+..+-.++.+.|++++|.+.|++..+... -+...|..+-.
T Consensus         6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l~~   84 (228)
T 4i17_A            6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNY-NLANAYIGKSA   84 (228)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC-SHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCc-chHHHHHHHHH
Confidence            678888888999999999999999998855444 6777777789999999999999999999987532 24578889999


Q ss_pred             HHHhcCCHHHHHHHHHHHHHcCCCCCH-------HHHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 036107          256 HYCREKDFRKVDYTLKEMQEKGCKPSV-------ITCTIVMHALEKAKQIYEALKVYEKMKSD  311 (441)
Q Consensus       256 ~~~~~g~~~~a~~l~~~m~~~g~~p~~-------~~~~~ll~~~~~~~~~~~a~~~~~~m~~~  311 (441)
                      .+...|++++|...|++..+.... +.       ..|..+-..+...|++++|.+.|++..+.
T Consensus        85 ~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~  146 (228)
T 4i17_A           85 AYRDMKNNQEYIATLTEGIKAVPG-NATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV  146 (228)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS
T ss_pred             HHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc
Confidence            999999999999999999875322 34       45778888899999999999999999886

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=98.72  E-value=1.5e-06  Score=78.33  Aligned_cols=218  Identities=6%  Similarity=-0.109  Sum_probs=148.4

Q ss_pred             hHHHHHHHhhhhhHhhhhcCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHhcCCCccHHHHHHHHhhcCHHHHHHH
Q 036107          105 PDKVVEALKCFCFTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVL  184 (441)
Q Consensus       105 ~g~~~~A~~~~~~~~~~~~~g~~p~~~~y~~li~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~l  184 (441)
                      ++++++|...|.                  .....|...|++++|.+.|++.........+.        .....+|+.+
T Consensus        30 ~~~~~~A~~~~~------------------~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~--------~~~a~~~~~l   83 (292)
T 1qqe_A           30 SYKFEEAADLCV------------------QAATIYRLRKELNLAGDSFLKAADYQKKAGNE--------DEAGNTYVEA   83 (292)
T ss_dssp             HHHHHHHHHHHH------------------HHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCH--------HHHHHHHHHH
T ss_pred             CccHHHHHHHHH------------------HHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCH--------HHHHHHHHHH
Confidence            556888877763                  22456788999999999999877642110000        0024688899


Q ss_pred             HHHHHhcCCHHHHHHHHHHhhh----CCCC--cHHHHHHHHHHHHhc-CCHHHHHHHHHHHhhCC----CCCC-HhhHHH
Q 036107          185 MDTLVKRNSVAHAYKVFLKFKD----CISL--SSQIFDVLIHGWCKT-RKSDYAQKAMKEMFQHG----FSPD-GVSYTC  252 (441)
Q Consensus       185 i~~~~~~g~~~~a~~~~~~~~~----~~~~--~~~~~~~li~~~~~~-~~~~~a~~~~~~m~~~g----~~p~-~~~~~~  252 (441)
                      -..|.+.|++++|+..|++.-.    .-.+  -..+++.+-..|... |++++|...|++..+..    -.+. ..+|..
T Consensus        84 g~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~  163 (292)
T 1qqe_A           84 YKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIK  163 (292)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHH
Confidence            9999999999999999987621    1111  245788889999996 99999999999887521    1001 356888


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHcCCCCCH------HHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHH
Q 036107          253 FIEHYCREKDFRKVDYTLKEMQEKGCKPSV------ITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFI  326 (441)
Q Consensus       253 li~~~~~~g~~~~a~~l~~~m~~~g~~p~~------~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~  326 (441)
                      +...+.+.|++++|...|++..+.......      ..|..+..++...|++++|...|++..+.  .|+....      
T Consensus       164 lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~~------  235 (292)
T 1qqe_A          164 CADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSE--DPNFADS------  235 (292)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------------
T ss_pred             HHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCCCc------
Confidence            999999999999999999999876433221      26777888899999999999999998764  2221100      


Q ss_pred             HHhcCccchHHHHHHHHH--hcCChhHHHHHHHHHH
Q 036107          327 LSKAVRFLIYNTMISSAC--VRSEEGNALKLRQKIE  360 (441)
Q Consensus       327 ~~~~g~~~~~~~li~~~~--~~g~~~~a~~~~~~m~  360 (441)
                          .....+..++.+|.  ..+++++|++.|+++.
T Consensus       236 ----~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~  267 (292)
T 1qqe_A          236 ----RESNFLKSLIDAVNEGDSEQLSEHCKEFDNFM  267 (292)
T ss_dssp             ------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSS
T ss_pred             ----HHHHHHHHHHHHHHcCCHHHHHHHHHHhccCC
Confidence                00011334444443  3456677777776553

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=98.71  E-value=8.7e-07  Score=85.24  Aligned_cols=220  Identities=9%  Similarity=-0.019  Sum_probs=146.7

Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHH----HHHhhhCCCCcHHHHHHHHHHHHhcC---CHHHHHHHHHHHhhCCCCCCHhh
Q 036107          177 DTRAMSVLMDTLVKRNSVAHAYKV----FLKFKDCISLSSQIFDVLIHGWCKTR---KSDYAQKAMKEMFQHGFSPDGVS  249 (441)
Q Consensus       177 ~~~~~~~li~~~~~~g~~~~a~~~----~~~~~~~~~~~~~~~~~li~~~~~~~---~~~~a~~~~~~m~~~g~~p~~~~  249 (441)
                      ++.....+-..|...+.++.+...    +.....+ .|+  .+..|-..|.+.|   +.++|.+.|++..+.|. ++...
T Consensus       140 ~~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~~-~~~--a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~-~~a~~  215 (452)
T 3e4b_A          140 YPEAGLAQVLLYRTQGTYDQHLDDVERICKAALNT-TDI--CYVELATVYQKKQQPEQQAELLKQMEAGVSRGT-VTAQR  215 (452)
T ss_dssp             CTTHHHHHHHHHHHHTCGGGGHHHHHHHHHHHTTT-CTT--HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTC-SCHHH
T ss_pred             CHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHcC-CHH--HHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCC-HHHHH
Confidence            556677777777777755444444    3333322 233  6778888888888   89999999999888763 45554


Q ss_pred             HHHHHHHHHhc----CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH-H--HhcCCHHHHHHHHHHHhhCCCCCCHHHHHH
Q 036107          250 YTCFIEHYCRE----KDFRKVDYTLKEMQEKGCKPSVITCTIVMHA-L--EKAKQIYEALKVYEKMKSDDCLTDTSFYSS  322 (441)
Q Consensus       250 ~~~li~~~~~~----g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~-~--~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~  322 (441)
                      +..+-..|...    +++++|...|++.. .|   +...+..|-.. +  ...+++++|.+.|++..+.|   +..    
T Consensus       216 ~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~----  284 (452)
T 3e4b_A          216 VDSVARVLGDATLGTPDEKTAQALLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPR----  284 (452)
T ss_dssp             HHHHHHHHTCGGGSSCCHHHHHHHHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHH----
T ss_pred             HHHHHHHHhCCCCCCCCHHHHHHHHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHH----
Confidence            45566666554    68999999999987 33   44556666655 3  46889999999999988877   232    


Q ss_pred             HHHHHHhcCccchHHHHHHHHHhcC-----ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCChhhHHHHHHH
Q 036107          323 LIFILSKAVRFLIYNTMISSACVRS-----EEGNALKLRQKIEEDSCKPDCETHARSLKMCCH----KKRMKDGMLVLNL  393 (441)
Q Consensus       323 li~~~~~~g~~~~~~~li~~~~~~g-----~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~----~g~~~~a~~~~~~  393 (441)
                                  .+..+-..|. .|     ++++|++.|++.. .|   +...+..|-..|..    ..++++|.+   .
T Consensus       285 ------------A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-~g---~~~A~~~Lg~~y~~G~g~~~d~~~A~~---~  344 (452)
T 3e4b_A          285 ------------AELLLGKLYY-EGKWVPADAKAAEAHFEKAV-GR---EVAADYYLGQIYRRGYLGKVYPQKALD---H  344 (452)
T ss_dssp             ------------HHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-TT---CHHHHHHHHHHHHTTTTSSCCHHHHHH---H
T ss_pred             ------------HHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-CC---CHHHHHHHHHHHHCCCCCCcCHHHHHH---H
Confidence                        2566666665 55     8999999998876 33   55556666666655    237777755   6


Q ss_pred             HHHHHHCCCCCCHHHHHHHHHHHHh----cCCccHHHHHHHHHHH
Q 036107          394 MREMLSKGIVPQESTHKMLAEELEK----KSLGNAKERIDELLTH  434 (441)
Q Consensus       394 ~~~m~~~~~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~m~~  434 (441)
                      +++..+.|. |  .....|-..|..    ..+.++|..+++.-..
T Consensus       345 ~~~Aa~~g~-~--~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~  386 (452)
T 3e4b_A          345 LLTAARNGQ-N--SADFAIAQLFSQGKGTKPDPLNAYVFSQLAKA  386 (452)
T ss_dssp             HHHHHTTTC-T--THHHHHHHHHHSCTTBCCCHHHHHHHHHHHHT
T ss_pred             HHHHHhhCh-H--HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHH
Confidence            666666664 2  334445555553    3478888888877543

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=98.71  E-value=2.4e-06  Score=76.43  Aligned_cols=224  Identities=10%  Similarity=0.073  Sum_probs=148.2

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHhhhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcC
Q 036107          182 SVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREK  261 (441)
Q Consensus       182 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g  261 (441)
                      --+.+++...|+.+..      .  .-.|....+..+... ...+    |...|++....+ .++..++..+..++...|
T Consensus        49 ~~~~Rs~iAlg~~~~~------~--~~~~~~~a~~~la~~-~~~~----a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g  114 (310)
T 3mv2_B           49 FYKAKTLLALGQYQSQ------D--PTSKLGKVLDLYVQF-LDTK----NIEELENLLKDK-QNSPYELYLLATAQAILG  114 (310)
T ss_dssp             HHHHHHHHHTTCCCCC------C--SSSTTHHHHHHHHHH-HTTT----CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHcCCCccC------C--CCCHHHHHHHHHHHH-hccc----HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcC
Confidence            3344666666665531      1  123444344444333 3332    788888888765 456666678888999999


Q ss_pred             CHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC-----CHHHHHHHHHHHHhcCccch
Q 036107          262 DFRKVDYTLKEMQEKGC-KPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLT-----DTSFYSSLIFILSKAVRFLI  335 (441)
Q Consensus       262 ~~~~a~~l~~~m~~~g~-~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~-----~~~~~~~li~~~~~~g~~~~  335 (441)
                      ++++|++++.+..+.|- .-+...+..++..+.+.|+++.|.+.++.|.+.  .|     +..+...+..+         
T Consensus       115 ~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~--~~d~~~~~d~~l~~Laea---------  183 (310)
T 3mv2_B          115 DLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNA--IEDTVSGDNEMILNLAES---------  183 (310)
T ss_dssp             CHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCHHHHHHHHHHHHHHHH---------
T ss_pred             CHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CccccccchHHHHHHHHH---------
Confidence            99999999999866654 236778888999999999999999999999875  44     23332222222         


Q ss_pred             HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHHH-HC-C----CCCCHHHH
Q 036107          336 YNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREML-SK-G----IVPQESTH  409 (441)
Q Consensus       336 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~~~~m~-~~-~----~~p~~~~~  409 (441)
                         .+......++..+|..+|+++.+.  .|+..+-..++.++.+.|++++|++.++.+.+.. +- .    -.-+..+.
T Consensus       184 ---~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~L  258 (310)
T 3mv2_B          184 ---YIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFL  258 (310)
T ss_dssp             ---HHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHH
T ss_pred             ---HHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccccccCCCCCHHHH
Confidence               122222334899999999998754  4664455556668899999999999665443321 00 1    12355566


Q ss_pred             HHHHHHHHhcCCccHHHHHHHHHHHHhh
Q 036107          410 KMLAEELEKKSLGNAKERIDELLTHATE  437 (441)
Q Consensus       410 ~~ll~~~~~~g~~~~a~~~~~~m~~~~~  437 (441)
                      ..++......|+  +|.++++++.+...
T Consensus       259 aN~i~l~~~lgk--~a~~l~~qL~~~~P  284 (310)
T 3mv2_B          259 ANQITLALMQGL--DTEDLTNQLVKLDH  284 (310)
T ss_dssp             HHHHHHHHHTTC--TTHHHHHHHHHTTC
T ss_pred             HHHHHHHHHhCh--HHHHHHHHHHHhCC
Confidence            566666666776  88899988887653

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=98.66  E-value=1.4e-06  Score=76.96  Aligned_cols=173  Identities=11%  Similarity=0.006  Sum_probs=129.0

Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCc---HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCC-CCC-HhhHH
Q 036107          177 DTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLS---SQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGF-SPD-GVSYT  251 (441)
Q Consensus       177 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~-~p~-~~~~~  251 (441)
                      +...+-.+-..+.+.|++++|...|+.+....+.+   ...+..+-.+|.+.|++++|...|++..+... .|. ...+.
T Consensus        14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~   93 (261)
T 3qky_A           14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEY   93 (261)
T ss_dssp             SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred             CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHH
Confidence            56777777888899999999999999985543334   67788888999999999999999999987421 112 34667


Q ss_pred             HHHHHHHh--------cCCHHHHHHHHHHHHHcCCCCCHHHH-----------------HHHHHHHHhcCCHHHHHHHHH
Q 036107          252 CFIEHYCR--------EKDFRKVDYTLKEMQEKGCKPSVITC-----------------TIVMHALEKAKQIYEALKVYE  306 (441)
Q Consensus       252 ~li~~~~~--------~g~~~~a~~l~~~m~~~g~~p~~~~~-----------------~~ll~~~~~~~~~~~a~~~~~  306 (441)
                      .+-.++..        .|++++|...|++..+.... +....                 ..+...|.+.|++++|...|+
T Consensus        94 ~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~  172 (261)
T 3qky_A           94 ERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPN-HELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYE  172 (261)
T ss_dssp             HHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTT-CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcC-chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHH
Confidence            77778888        99999999999999876321 22222                 455778999999999999999


Q ss_pred             HHhhCCCCC--CHHHHHHHHHHHHhcCccchHHHHHHHHHhc----------CChhHHHHHHHHHHHcCCCCCH
Q 036107          307 KMKSDDCLT--DTSFYSSLIFILSKAVRFLIYNTMISSACVR----------SEEGNALKLRQKIEEDSCKPDC  368 (441)
Q Consensus       307 ~m~~~g~~~--~~~~~~~li~~~~~~g~~~~~~~li~~~~~~----------g~~~~a~~~~~~m~~~g~~p~~  368 (441)
                      ...+.....  ....                +..+..+|...          |++++|+..|++..+.  .|+.
T Consensus       173 ~~l~~~p~~~~~~~a----------------~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~  228 (261)
T 3qky_A          173 AVFDAYPDTPWADDA----------------LVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQI--FPDS  228 (261)
T ss_dssp             HHHHHCTTSTTHHHH----------------HHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHH--CTTC
T ss_pred             HHHHHCCCCchHHHH----------------HHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHH--CCCC
Confidence            998753211  1222                44555555544          8889999999998865  4554

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=98.63  E-value=5.6e-06  Score=74.55  Aligned_cols=190  Identities=13%  Similarity=-0.004  Sum_probs=131.4

Q ss_pred             HHHHhcCCHHHHHHHHHHhhh-----CCCC-cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC----CCCC-CHhhHHHHH
Q 036107          186 DTLVKRNSVAHAYKVFLKFKD-----CISL-SSQIFDVLIHGWCKTRKSDYAQKAMKEMFQH----GFSP-DGVSYTCFI  254 (441)
Q Consensus       186 ~~~~~~g~~~~a~~~~~~~~~-----~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----g~~p-~~~~~~~li  254 (441)
                      ..|...|++++|.+.|.+.-.     +.++ ...+|+.+-.+|.+.|++++|...|++..+.    |-.. -..+|+.+-
T Consensus        45 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg  124 (292)
T 1qqe_A           45 TIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELG  124 (292)
T ss_dssp             HHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            356778999999999987621     2222 2568999999999999999999999887652    1111 135788888


Q ss_pred             HHHHhc-CCHHHHHHHHHHHHHc----CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHH
Q 036107          255 EHYCRE-KDFRKVDYTLKEMQEK----GCKPS-VITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILS  328 (441)
Q Consensus       255 ~~~~~~-g~~~~a~~l~~~m~~~----g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~  328 (441)
                      ..|... |++++|+..|++..+.    +-.+. ..++..+...+.+.|++++|...|++..+.........|.. -    
T Consensus       125 ~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~-~----  199 (292)
T 1qqe_A          125 EILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSL-K----  199 (292)
T ss_dssp             HHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGH-H----
T ss_pred             HHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHH-H----
Confidence            999996 9999999999987653    11111 45788899999999999999999999988543322110000 0    


Q ss_pred             hcCccchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCH------HHHHHHHHHHH--hcCChhhH
Q 036107          329 KAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDC------ETHARSLKMCC--HKKRMKDG  387 (441)
Q Consensus       329 ~~g~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~------~t~~~li~~~~--~~g~~~~a  387 (441)
                           ..|..+...+...|++++|+..|++..+  +.|+.      ..+..++.++.  ..+++++|
T Consensus       200 -----~~~~~lg~~~~~~g~~~~A~~~~~~al~--l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A  259 (292)
T 1qqe_A          200 -----DYFLKKGLCQLAATDAVAAARTLQEGQS--EDPNFADSRESNFLKSLIDAVNEGDSEQLSEH  259 (292)
T ss_dssp             -----HHHHHHHHHHHHTTCHHHHHHHHHGGGC--C---------HHHHHHHHHHHHTTCTTTHHHH
T ss_pred             -----HHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHH
Confidence                 1267777888899999999999999764  23332      13445566654  23445554

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=98.62  E-value=5.5e-06  Score=71.40  Aligned_cols=172  Identities=10%  Similarity=0.028  Sum_probs=118.6

Q ss_pred             CHHHHHHHHHHHHcCCChhHHHHHHHHHHHhcCCCccHHHHHHHHhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCC
Q 036107          129 TPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCI  208 (441)
Q Consensus       129 ~~~~y~~li~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~  208 (441)
                      +...+-.+...+.+.|++++|.+.|+++....+..+.           ....+..+..++.+.|++++|...|+++-+..
T Consensus         3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~-----------~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~   71 (225)
T 2yhc_A            3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPY-----------SQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN   71 (225)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTT-----------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChH-----------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC
Confidence            3444555566777888889999988888875433221           23567777788888899999988888873322


Q ss_pred             CCcH---HHHHHHHHHHH------------------hcCCHHHHHHHHHHHhhCCCCCCHh-hH----------------
Q 036107          209 SLSS---QIFDVLIHGWC------------------KTRKSDYAQKAMKEMFQHGFSPDGV-SY----------------  250 (441)
Q Consensus       209 ~~~~---~~~~~li~~~~------------------~~~~~~~a~~~~~~m~~~g~~p~~~-~~----------------  250 (441)
                      +-+.   ..+-.+-.++.                  ..|++++|...|++..+.  .|+.. .+                
T Consensus        72 P~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~P~~~~a~~a~~~l~~~~~~~~~~  149 (225)
T 2yhc_A           72 PTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG--YPNSQYTTDATKRLVFLKDRLAKY  149 (225)
T ss_dssp             TTCTTHHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT--CTTCTTHHHHHHHHHHHHHHHHHH
T ss_pred             cCCCcHHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH--CcCChhHHHHHHHHHHHHHHHHHH
Confidence            2221   12333333333                  257889999999998874  24432 22                


Q ss_pred             -HHHHHHHHhcCCHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCC
Q 036107          251 -TCFIEHYCREKDFRKVDYTLKEMQEKGCKP--SVITCTIVMHALEKAKQIYEALKVYEKMKSDDC  313 (441)
Q Consensus       251 -~~li~~~~~~g~~~~a~~l~~~m~~~g~~p--~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~  313 (441)
                       -.+...+.+.|++++|...|+++.+.....  ....+..+..++.+.|++++|.+.++.+...+.
T Consensus       150 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~  215 (225)
T 2yhc_A          150 EYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSS  215 (225)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCS
T ss_pred             HHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCC
Confidence             234456788999999999999998763221  135688899999999999999999999887643

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=98.59  E-value=3.2e-06  Score=74.63  Aligned_cols=170  Identities=12%  Similarity=0.037  Sum_probs=130.3

Q ss_pred             CHHHHHHHHHHHHcCCChhHHHHHHHHHHHhcCCCccHHHHHHHHhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhC-
Q 036107          129 TPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDC-  207 (441)
Q Consensus       129 ~~~~y~~li~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-  207 (441)
                      +...+-..-..+.+.|++++|.+.|+++....+..+.           ....+..+..++.+.|++++|...|+..-.. 
T Consensus        14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~-----------~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~   82 (261)
T 3qky_A           14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEW-----------AADAQFYLARAYYQNKEYLLAASEYERFIQIY   82 (261)
T ss_dssp             SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTT-----------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcc-----------hHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHC
Confidence            5667777777888999999999999999886533211           2677888888999999999999999988432 


Q ss_pred             --CCCcHHHHHHHHHHHHh--------cCCHHHHHHHHHHHhhCCCCCCH-hhH-----------------HHHHHHHHh
Q 036107          208 --ISLSSQIFDVLIHGWCK--------TRKSDYAQKAMKEMFQHGFSPDG-VSY-----------------TCFIEHYCR  259 (441)
Q Consensus       208 --~~~~~~~~~~li~~~~~--------~~~~~~a~~~~~~m~~~g~~p~~-~~~-----------------~~li~~~~~  259 (441)
                        .+.....+..+-.++.+        .|++++|...|++..+.  .|+. ...                 ..+-..|.+
T Consensus        83 p~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~  160 (261)
T 3qky_A           83 QIDPRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR--YPNHELVDDATQKIRELRAKLARKQYEAARLYER  160 (261)
T ss_dssp             TTCTTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH--CTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCchhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHH--CcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence              22334566777778888        99999999999999874  2432 333                 445677889


Q ss_pred             cCCHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHhc----------CCHHHHHHHHHHHhhC
Q 036107          260 EKDFRKVDYTLKEMQEKGCKP--SVITCTIVMHALEKA----------KQIYEALKVYEKMKSD  311 (441)
Q Consensus       260 ~g~~~~a~~l~~~m~~~g~~p--~~~~~~~ll~~~~~~----------~~~~~a~~~~~~m~~~  311 (441)
                      .|++++|...|++..+.....  ....+..+..+|...          |++++|...|+...+.
T Consensus       161 ~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~  224 (261)
T 3qky_A          161 RELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQI  224 (261)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHH
T ss_pred             ccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHH
Confidence            999999999999998753221  345777788888866          8999999999999875

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=98.58  E-value=4.2e-06  Score=71.20  Aligned_cols=169  Identities=10%  Similarity=0.002  Sum_probs=123.0

Q ss_pred             HHHHHHHHHHHcCCChhHHHHHHHHHHHhcCCCccHHHHHHHHhhcCHHHHHH----------------HHHHHHhcCCH
Q 036107          131 ETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSV----------------LMDTLVKRNSV  194 (441)
Q Consensus       131 ~~y~~li~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------li~~~~~~g~~  194 (441)
                      ..+-..-..+.+.|++++|.+.|++..+..|.              +...+..                +-..+.+.|++
T Consensus         5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~--------------~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~   70 (208)
T 3urz_A            5 DEMLQKVSAAIEAGQNGQAVSYFRQTIALNID--------------RTEMYYWTNVDKNSEISSKLATELALAYKKNRNY   70 (208)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHH--------------HHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC--------------ChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCH
Confidence            33444455677889999999999998875422              3344444                88889999999


Q ss_pred             HHHHHHHHHhhhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC-CHhhHHHHHHHHHhcCC--HHHHHHHHH
Q 036107          195 AHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSP-DGVSYTCFIEHYCREKD--FRKVDYTLK  271 (441)
Q Consensus       195 ~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~--~~~a~~l~~  271 (441)
                      ++|...|++.-...+-+...+..+-..+...|++++|...|++..+.  .| +..+|..+-..|...|+  ...+...++
T Consensus        71 ~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~  148 (208)
T 3urz_A           71 DKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQL--EADNLAANIFLGNYYYLTAEQEKKKLETDYK  148 (208)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence            99999999985545667888999999999999999999999999874  34 46778888877766654  344555555


Q ss_pred             HHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHH
Q 036107          272 EMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSF  319 (441)
Q Consensus       272 ~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~  319 (441)
                      ....  ..|....+...-.++...|++++|...|++..+.  .|+...
T Consensus       149 ~~~~--~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l--~P~~~~  192 (208)
T 3urz_A          149 KLSS--PTKMQYARYRDGLSKLFTTRYEKARNSLQKVILR--FPSTEA  192 (208)
T ss_dssp             ---C--CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTT--SCCHHH
T ss_pred             HHhC--CCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCHHH
Confidence            5432  2233334444555677789999999999999875  566543

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=98.56  E-value=1.2e-05  Score=71.87  Aligned_cols=184  Identities=7%  Similarity=-0.050  Sum_probs=129.3

Q ss_pred             HHHHHHHhhhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCC-CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 036107          197 AYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGF-SPDGVSYTCFIEHYCREKDFRKVDYTLKEMQE  275 (441)
Q Consensus       197 a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~-~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~  275 (441)
                      |+..|+++-..-.++..++..+-.++...|++++|++++.+-...|- .-+...+..++..+.+.|+.+.|.+.+++|.+
T Consensus        85 a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~  164 (310)
T 3mv2_B           85 NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN  164 (310)
T ss_dssp             CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence            67778776433245566666788899999999999999999866543 23567888999999999999999999999987


Q ss_pred             cCCCC-----CHHHHHHHHHHHH--hcC--CHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCccchHHHHHHHHHhc
Q 036107          276 KGCKP-----SVITCTIVMHALE--KAK--QIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVR  346 (441)
Q Consensus       276 ~g~~p-----~~~~~~~ll~~~~--~~~--~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~~~li~~~~~~  346 (441)
                      .  .|     +..+...|..++.  ..|  ++.+|..+|+++.+..  |+..+                -..++.++.+.
T Consensus       165 ~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~--p~~~~----------------~~lLln~~~~~  224 (310)
T 3mv2_B          165 A--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTF--PTWKT----------------QLGLLNLHLQQ  224 (310)
T ss_dssp             H--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTS--CSHHH----------------HHHHHHHHHHH
T ss_pred             c--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhC--CCccc----------------HHHHHHHHHHc
Confidence            5  45     3566777777733  334  8999999999997753  44211                23344478899


Q ss_pred             CChhHHHHHHHHHHHc-----CC---CC-CHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCCCCHH
Q 036107          347 SEEGNALKLRQKIEED-----SC---KP-DCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQES  407 (441)
Q Consensus       347 g~~~~a~~~~~~m~~~-----g~---~p-~~~t~~~li~~~~~~g~~~~a~~~~~~~~~m~~~~~~p~~~  407 (441)
                      |++++|.+.++.+.+.     ..   .| |..++..+|......|+  ++.+   ++.++.+  ..|+..
T Consensus       225 g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~---l~~qL~~--~~P~hp  287 (310)
T 3mv2_B          225 RNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTED---LTNQLVK--LDHEHA  287 (310)
T ss_dssp             TCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHH---HHHHHHH--TTCCCH
T ss_pred             CCHHHHHHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHH---HHHHHHH--hCCCCh
Confidence            9999999999977642     11   24 44556455555555676  6666   4555443  345543

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=98.55  E-value=2.2e-06  Score=70.77  Aligned_cols=161  Identities=8%  Similarity=-0.013  Sum_probs=120.6

Q ss_pred             HHHHHHHHHcCCChhHHHHHHHHHHHhcCCCccHHHHHHHHhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcH
Q 036107          133 YNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSS  212 (441)
Q Consensus       133 y~~li~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~  212 (441)
                      +...-..+.+.|++++|...|++..+..|.              +...+..+...+.+.|++++|+..++......+ +.
T Consensus         9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~P~--------------~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~   73 (176)
T 2r5s_A            9 LLKQVSELLQQGEHAQALNVIQTLSDELQS--------------RGDVKLAKADCLLETKQFELAQELLATIPLEYQ-DN   73 (176)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHTSCHHHHT--------------SHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHCCC--------------cHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-Ch
Confidence            445566788899999999999987764422              678899999999999999999999998744323 44


Q ss_pred             HHHHHHHHH-HHhcCCHHHHHHHHHHHhhCCCCC-CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHH
Q 036107          213 QIFDVLIHG-WCKTRKSDYAQKAMKEMFQHGFSP-DGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKP-SVITCTIVM  289 (441)
Q Consensus       213 ~~~~~li~~-~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p-~~~~~~~ll  289 (441)
                      ..+..+... +.+.+...+|...|++..+.  .| +...+..+-..+...|++++|...|++..+....+ +...+..+.
T Consensus        74 ~~~~~~~~~~~~~~~~~~~a~~~~~~al~~--~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~  151 (176)
T 2r5s_A           74 SYKSLIAKLELHQQAAESPELKRLEQELAA--NPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFM  151 (176)
T ss_dssp             HHHHHHHHHHHHHHHTSCHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHH
T ss_pred             HHHHHHHHHHHHhhcccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHH
Confidence            333322211 22323334578888888763  35 47888889999999999999999999998865432 356888999


Q ss_pred             HHHHhcCCHHHHHHHHHHHhh
Q 036107          290 HALEKAKQIYEALKVYEKMKS  310 (441)
Q Consensus       290 ~~~~~~~~~~~a~~~~~~m~~  310 (441)
                      ..+...|+.++|...|++...
T Consensus       152 ~~~~~~g~~~~A~~~y~~al~  172 (176)
T 2r5s_A          152 DILSALGQGNAIASKYRRQLY  172 (176)
T ss_dssp             HHHHHHCSSCHHHHHHHHHHH
T ss_pred             HHHHHhCCCCcHHHHHHHHHH
Confidence            999999999999999887653

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=98.52  E-value=3.1e-06  Score=83.91  Aligned_cols=154  Identities=4%  Similarity=-0.146  Sum_probs=117.5

Q ss_pred             CCChhHHHHHHHHHHHhcCCCccHHHHHHHHhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcHHHHHHHHHHH
Q 036107          143 SKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGW  222 (441)
Q Consensus       143 ~~~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~  222 (441)
                      .|++++|.+.+++..+..+.              +...+..+-..+.+.|++++|.+.|++.-+..+.+...+..+-..|
T Consensus         2 ~g~~~~A~~~~~~al~~~p~--------------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~   67 (568)
T 2vsy_A            2 TADGPRELLQLRAAVRHRPQ--------------DFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVR   67 (568)
T ss_dssp             -------------------C--------------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHH
T ss_pred             CccHHHHHHHHHHHHHhCCC--------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            47889999999988774422              6788999999999999999999999998655566788899999999


Q ss_pred             HhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc---CCHH
Q 036107          223 CKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKA---KQIY  299 (441)
Q Consensus       223 ~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~---~~~~  299 (441)
                      ...|++++|.+.|++..+.. +.+...|..+-..+.+.|++++|.+.|++..+... -+...+..+..++...   |+++
T Consensus        68 ~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~~~~g~~~  145 (568)
T 2vsy_A           68 WTQQRHAEAAVLLQQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLP-EEPYITAQLLNWRRRLCDWRALD  145 (568)
T ss_dssp             HHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCTTHH
T ss_pred             HHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhhccccHH
Confidence            99999999999999998753 23567899999999999999999999999987643 3678899999999999   9999


Q ss_pred             HHHHHHHHHhhCC
Q 036107          300 EALKVYEKMKSDD  312 (441)
Q Consensus       300 ~a~~~~~~m~~~g  312 (441)
                      +|.+.+++..+.+
T Consensus       146 ~A~~~~~~al~~~  158 (568)
T 2vsy_A          146 VLSAQVRAAVAQG  158 (568)
T ss_dssp             HHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHhcC
Confidence            9999999988754

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=98.50  E-value=6.4e-06  Score=73.94  Aligned_cols=165  Identities=12%  Similarity=-0.022  Sum_probs=130.2

Q ss_pred             CHHHHHHHHHHHHcCCChhHHHHHHHHHHHhcCCCccHHHHHHHHhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCC
Q 036107          129 TPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCI  208 (441)
Q Consensus       129 ~~~~y~~li~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~  208 (441)
                      +...+..+-..+.+.|++++|.+.|++.....+.              +...+..+...+.+.|++++|...+++.....
T Consensus       116 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~--------------~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~  181 (287)
T 3qou_A          116 EEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQ--------------NGEIGLLLAETLIALNRSEDAEAVLXTIPLQD  181 (287)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTS--------------CHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGG
T ss_pred             chhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCc--------------chhHHHHHHHHHHHCCCHHHHHHHHHhCchhh
Confidence            3456777778888999999999999999886533              67888999999999999999999999884432


Q ss_pred             CCcHHHHH-HHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CCHHHHH
Q 036107          209 SLSSQIFD-VLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCK-PSVITCT  286 (441)
Q Consensus       209 ~~~~~~~~-~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~-p~~~~~~  286 (441)
                       |+..... .....+.+.++.++|.+.|++..... +.+...+..+-..+...|++++|...|.+..+.... .+...+.
T Consensus       182 -p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~  259 (287)
T 3qou_A          182 -QDTRYQGLVAQIELLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRX  259 (287)
T ss_dssp             -CSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHH
T ss_pred             -cchHHHHHHHHHHHHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHH
Confidence             3433322 23334667788888999998887643 235788889999999999999999999999886432 2367899


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHh
Q 036107          287 IVMHALEKAKQIYEALKVYEKMK  309 (441)
Q Consensus       287 ~ll~~~~~~~~~~~a~~~~~~m~  309 (441)
                      .+...+...|+.++|...|++..
T Consensus       260 ~l~~~~~~~g~~~~a~~~~r~al  282 (287)
T 3qou_A          260 TFQEILAALGTGDALASXYRRQL  282 (287)
T ss_dssp             HHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHHHHHcCCCCcHHHHHHHHH
Confidence            99999999999999988887654

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=98.49  E-value=0.00026  Score=67.84  Aligned_cols=224  Identities=9%  Similarity=-0.022  Sum_probs=153.8

Q ss_pred             CHHHHHHHHHHHHhcC---CHHHHHHHHHHhhhCCCCcHHHHHHHHHHHHhc----CCHHHHHHHHHHHhhCCCCCCHhh
Q 036107          177 DTRAMSVLMDTLVKRN---SVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKT----RKSDYAQKAMKEMFQHGFSPDGVS  249 (441)
Q Consensus       177 ~~~~~~~li~~~~~~g---~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~----~~~~~a~~~~~~m~~~g~~p~~~~  249 (441)
                      ++..+..|-..|.+.|   +.++|++.|...-..-.++...+..|-..|...    +++++|.++|++.. .   -+...
T Consensus       175 ~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-~---g~~~a  250 (452)
T 3e4b_A          175 TDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA-P---GYPAS  250 (452)
T ss_dssp             CTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-G---GSTHH
T ss_pred             CHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-C---CCHHH
Confidence            5568888889999999   999999999888555566776666777777554    79999999999987 3   35556


Q ss_pred             HHHHHHH-H--HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC-----CHHHHHHHHHHHhhCCCCCCHHHHH
Q 036107          250 YTCFIEH-Y--CREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAK-----QIYEALKVYEKMKSDDCLTDTSFYS  321 (441)
Q Consensus       250 ~~~li~~-~--~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~-----~~~~a~~~~~~m~~~g~~~~~~~~~  321 (441)
                      +..+-.. +  ...+++++|.+.|++..+.|   +...+..|-..|. .|     ++++|...|+... .|   +...  
T Consensus       251 ~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-~g---~~~A--  320 (452)
T 3e4b_A          251 WVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-GR---EVAA--  320 (452)
T ss_dssp             HHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-TT---CHHH--
T ss_pred             HHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-CC---CHHH--
Confidence            6666655 3  46899999999999998887   5667777777776 55     9999999999888 44   2222  


Q ss_pred             HHHHHHHhcCccchHHHHHHHHHh----cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCChhhHHHHHHH
Q 036107          322 SLIFILSKAVRFLIYNTMISSACV----RSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCH----KKRMKDGMLVLNL  393 (441)
Q Consensus       322 ~li~~~~~~g~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~----~g~~~~a~~~~~~  393 (441)
                                    +..+-..|..    ..+.++|...|++..+.|. |+.  ...|-..|..    ..+.++|..   .
T Consensus       321 --------------~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~-~~A--~~~Lg~~y~~G~g~~~d~~~A~~---~  380 (452)
T 3e4b_A          321 --------------DYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQ-NSA--DFAIAQLFSQGKGTKPDPLNAYV---F  380 (452)
T ss_dssp             --------------HHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTC-TTH--HHHHHHHHHSCTTBCCCHHHHHH---H
T ss_pred             --------------HHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhCh-HHH--HHHHHHHHHhCCCCCCCHHHHHH---H
Confidence                          5555555655    4489999999999888773 333  4445555543    346677755   6


Q ss_pred             HHHHHHCCCCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHH
Q 036107          394 MREMLSKGIVPQESTHKMLAEELEKKSLGNAKERIDELLTHA  435 (441)
Q Consensus       394 ~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~  435 (441)
                      +..-.+.|.. +.......+......++.++|.++.+...+.
T Consensus       381 ~~~A~~~g~~-~a~~~l~~l~~~~~~~~~~~a~~~~~~~~~~  421 (452)
T 3e4b_A          381 SQLAKAQDTP-EANDLATQLEAPLTPAQRAEGQRLVQQELAA  421 (452)
T ss_dssp             HHHHHTTCCH-HHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHCCCH-HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHh
Confidence            6666556643 2222222222222334566666666665544

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=98.49  E-value=1.1e-05  Score=68.52  Aligned_cols=112  Identities=10%  Similarity=0.017  Sum_probs=68.5

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHhhhCCCCcHHHHHH----------------HHHHHHhcCCHHHHHHHHHHHhhCCCCCC
Q 036107          183 VLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDV----------------LIHGWCKTRKSDYAQKAMKEMFQHGFSPD  246 (441)
Q Consensus       183 ~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~----------------li~~~~~~~~~~~a~~~~~~m~~~g~~p~  246 (441)
                      .....+.+.|++++|...|+..-...+-+...|..                +-.+|.+.|++++|...|++..+.. +-+
T Consensus         9 ~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~   87 (208)
T 3urz_A            9 QKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKA-PNN   87 (208)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTC
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCC
Confidence            34445667888999988888773322233444544                6666667777777777777666532 124


Q ss_pred             HhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 036107          247 GVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAK  296 (441)
Q Consensus       247 ~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~  296 (441)
                      ...|..+-..+...|++++|...|++..+... -+..+|..+-.+|...|
T Consensus        88 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~lg~~~~~~~  136 (208)
T 3urz_A           88 VDCLEACAEMQVCRGQEKDALRMYEKILQLEA-DNLAANIFLGNYYYLTA  136 (208)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHHh
Confidence            55666666667777777777777777666432 24556666655554443

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=98.49  E-value=5.3e-06  Score=68.40  Aligned_cols=162  Identities=9%  Similarity=0.008  Sum_probs=120.8

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHH-HH
Q 036107          180 AMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEH-YC  258 (441)
Q Consensus       180 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~-~~  258 (441)
                      .+..+...+.+.|++++|...|++.-...+.+...+..+-..+.+.|++++|...|++....  .|+...+..+... +.
T Consensus         8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~--~p~~~~~~~~~~~~~~   85 (176)
T 2r5s_A            8 QLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLE--YQDNSYKSLIAKLELH   85 (176)
T ss_dssp             THHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG--GCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc--cCChHHHHHHHHHHHH
Confidence            34455667889999999999999874444557778999999999999999999999998764  3444333222111 22


Q ss_pred             hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC-CHHHHHHHHHHHHhcCccchHH
Q 036107          259 REKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLT-DTSFYSSLIFILSKAVRFLIYN  337 (441)
Q Consensus       259 ~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~-~~~~~~~li~~~~~~g~~~~~~  337 (441)
                      ..++..+|...+++..+... -+...+..+..++...|++++|...|+++.+....+ +...                +.
T Consensus        86 ~~~~~~~a~~~~~~al~~~P-~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a----------------~~  148 (176)
T 2r5s_A           86 QQAAESPELKRLEQELAANP-DNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEV----------------KK  148 (176)
T ss_dssp             HHHTSCHHHHHHHHHHHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHH----------------HH
T ss_pred             hhcccchHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHH----------------HH
Confidence            22333457888888876532 257889999999999999999999999998875432 2222                77


Q ss_pred             HHHHHHHhcCChhHHHHHHHHHH
Q 036107          338 TMISSACVRSEEGNALKLRQKIE  360 (441)
Q Consensus       338 ~li~~~~~~g~~~~a~~~~~~m~  360 (441)
                      .+...+...|+.++|...|++..
T Consensus       149 ~l~~~~~~~g~~~~A~~~y~~al  171 (176)
T 2r5s_A          149 TFMDILSALGQGNAIASKYRRQL  171 (176)
T ss_dssp             HHHHHHHHHCSSCHHHHHHHHHH
T ss_pred             HHHHHHHHhCCCCcHHHHHHHHH
Confidence            88888888999999999998764

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=98.47  E-value=6.2e-05  Score=67.60  Aligned_cols=165  Identities=12%  Similarity=-0.010  Sum_probs=121.0

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHhhhC--CCCcH----HHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC-CC----Hhh
Q 036107          181 MSVLMDTLVKRNSVAHAYKVFLKFKDC--ISLSS----QIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFS-PD----GVS  249 (441)
Q Consensus       181 ~~~li~~~~~~g~~~~a~~~~~~~~~~--~~~~~----~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~-p~----~~~  249 (441)
                      +...+..+.+.|++++|.++++.....  ..|+.    ..+..+...+...+++++|...|++....... ++    ..+
T Consensus        78 l~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~  157 (293)
T 3u3w_A           78 FKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYI  157 (293)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHH
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHH
Confidence            334467888999999999999997442  23332    23445666777888999999999999874222 22    236


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHc-----CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhh----CCCCCCHHH
Q 036107          250 YTCFIEHYCREKDFRKVDYTLKEMQEK-----GCKPS-VITCTIVMHALEKAKQIYEALKVYEKMKS----DDCLTDTSF  319 (441)
Q Consensus       250 ~~~li~~~~~~g~~~~a~~l~~~m~~~-----g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~m~~----~g~~~~~~~  319 (441)
                      |+.+-..|...|++++|...|++..+.     +..+. ..+|..+...|.+.|++++|...+++..+    .+..+... 
T Consensus       158 ~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~-  236 (293)
T 3u3w_A          158 ENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG-  236 (293)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHH-
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHH-
Confidence            899999999999999999999998741     22222 34788999999999999999999998764    23222211 


Q ss_pred             HHHHHHHHHhcCccchHHHHHHHHHhcCC-hhHHHHHHHHHH
Q 036107          320 YSSLIFILSKAVRFLIYNTMISSACVRSE-EGNALKLRQKIE  360 (441)
Q Consensus       320 ~~~li~~~~~~g~~~~~~~li~~~~~~g~-~~~a~~~~~~m~  360 (441)
                                    .+|..+-..|.+.|+ .++|++.+++..
T Consensus       237 --------------~~~~~lg~~~~~~g~~~~~A~~~~~~Al  264 (293)
T 3u3w_A          237 --------------QLYYQRGECLRKLEYEEAEIEDAYKKAS  264 (293)
T ss_dssp             --------------HHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred             --------------HHHHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence                          237778888888885 589988888764

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=98.46  E-value=1.5e-05  Score=72.22  Aligned_cols=169  Identities=11%  Similarity=-0.011  Sum_probs=124.9

Q ss_pred             HHHHHHHHHHcCCChhHHHHHHHHHHHhcCCCccHHHHHHHHhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHhh----hC
Q 036107          132 TYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFK----DC  207 (441)
Q Consensus       132 ~y~~li~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~----~~  207 (441)
                      .|+.....|...|++++|.+.|.+............        .-..+|+.+...|.+.|++++|+..|++.-    ..
T Consensus        38 ~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~--------~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~  109 (307)
T 2ifu_A           38 EYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLF--------HAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVEN  109 (307)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH--------HHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHH--------HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHc
Confidence            566667788899999999999998776431111000        024578888899999999999999998752    11


Q ss_pred             CCC--cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC----CCCC-CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHc----
Q 036107          208 ISL--SSQIFDVLIHGWCKTRKSDYAQKAMKEMFQH----GFSP-DGVSYTCFIEHYCREKDFRKVDYTLKEMQEK----  276 (441)
Q Consensus       208 ~~~--~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----g~~p-~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~----  276 (441)
                      -.+  ...+++.+-..|.. |++++|.+.|++..+.    |-.+ ...+++.+-..+.+.|++++|...|++..+.    
T Consensus       110 g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~  188 (307)
T 2ifu_A          110 GTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEM  188 (307)
T ss_dssp             TCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred             CCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc
Confidence            122  24567888888888 9999999999887652    1111 1467888899999999999999999998653    


Q ss_pred             CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 036107          277 GCKPS-VITCTIVMHALEKAKQIYEALKVYEKMK  309 (441)
Q Consensus       277 g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~m~  309 (441)
                      +..++ ...+..+..++...|++++|...|++..
T Consensus       189 ~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al  222 (307)
T 2ifu_A          189 ENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY  222 (307)
T ss_dssp             TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred             CChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence            22222 2366777778888899999999999988

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=98.45  E-value=6.1e-05  Score=67.64  Aligned_cols=173  Identities=9%  Similarity=0.003  Sum_probs=126.1

Q ss_pred             HHHHHHHHHHHHcCCChhHHHHHHHHHHHhcCCCccHHHHHHHHhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhh---
Q 036107          130 PETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKD---  206 (441)
Q Consensus       130 ~~~y~~li~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~---  206 (441)
                      ...+...+..+...|++++|.+.+.+..+..+..+....        ....+..+...+...|++++|...++..-.   
T Consensus        75 ~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~  146 (293)
T 2qfc_A           75 KKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQ--------FLQWQYYVAAYVLKKVDYEYCILELKKLLNQQL  146 (293)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHH--------HHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCC
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHH--------HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHh
Confidence            345667788899999999999999988775422211100        122344466677888999999999987622   


Q ss_pred             -CCCCc--HHHHHHHHHHHHhcCCHHHHHHHHHHHhhC-CCCCC-----HhhHHHHHHHHHhcCCHHHHHHHHHHHHHc-
Q 036107          207 -CISLS--SQIFDVLIHGWCKTRKSDYAQKAMKEMFQH-GFSPD-----GVSYTCFIEHYCREKDFRKVDYTLKEMQEK-  276 (441)
Q Consensus       207 -~~~~~--~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-g~~p~-----~~~~~~li~~~~~~g~~~~a~~l~~~m~~~-  276 (441)
                       ...+.  ..+|+.+-..|...|++++|...|++..+. ...|+     ..+|..+...|.+.|++++|...+++..+. 
T Consensus       147 ~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~  226 (293)
T 2qfc_A          147 TGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEIS  226 (293)
T ss_dssp             CSSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             cCCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence             11222  457889999999999999999999988621 01122     258889999999999999999999987543 


Q ss_pred             ---CCCC-CHHHHHHHHHHHHhcCCHHHH-HHHHHHHhh
Q 036107          277 ---GCKP-SVITCTIVMHALEKAKQIYEA-LKVYEKMKS  310 (441)
Q Consensus       277 ---g~~p-~~~~~~~ll~~~~~~~~~~~a-~~~~~~m~~  310 (441)
                         +... -..+|..+-.+|.+.|++++| ...++....
T Consensus       227 ~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~  265 (293)
T 2qfc_A          227 CRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASF  265 (293)
T ss_dssp             HHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred             HhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence               2211 167888999999999999999 777776543

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=98.44  E-value=1.7e-05  Score=68.22  Aligned_cols=170  Identities=14%  Similarity=0.024  Sum_probs=120.1

Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCC---CcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHh----h
Q 036107          177 DTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCIS---LSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGV----S  249 (441)
Q Consensus       177 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~----~  249 (441)
                      +...+-.+...+.+.|++++|...|+.+....+   .....+..+..+|.+.|++++|...|++..+..  |+..    .
T Consensus         3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~--P~~~~~~~a   80 (225)
T 2yhc_A            3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN--PTHPNIDYV   80 (225)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCTTHHHH
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC--cCCCcHHHH
Confidence            345566667788899999999999999844222   224567778899999999999999999998742  4322    3


Q ss_pred             HHHHHHHHHh------------------cCCHHHHHHHHHHHHHcCCCCCHHHH-----------------HHHHHHHHh
Q 036107          250 YTCFIEHYCR------------------EKDFRKVDYTLKEMQEKGCKPSVITC-----------------TIVMHALEK  294 (441)
Q Consensus       250 ~~~li~~~~~------------------~g~~~~a~~l~~~m~~~g~~p~~~~~-----------------~~ll~~~~~  294 (441)
                      +..+-.++.+                  .|++++|...|+++.+.... +...+                 ..+...|.+
T Consensus        81 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~-~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~  159 (225)
T 2yhc_A           81 MYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPN-SQYTTDATKRLVFLKDRLAKYEYSVAEYYTE  159 (225)
T ss_dssp             HHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTT-CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcC-ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333344433                  57899999999999875321 11111                 234556788


Q ss_pred             cCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCccchHHHHHHHHHhcCChhHHHHHHHHHHHcC
Q 036107          295 AKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDS  363 (441)
Q Consensus       295 ~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g  363 (441)
                      .|++++|...|+.+.+..  |+.....            ..+..+..+|.+.|+.++|.+.++.+...+
T Consensus       160 ~~~~~~A~~~~~~~l~~~--p~~~~~~------------~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~  214 (225)
T 2yhc_A          160 RGAWVAVVNRVEGMLRDY--PDTQATR------------DALPLMENAYRQMQMNAQAEKVAKIIAANS  214 (225)
T ss_dssp             HTCHHHHHHHHHHHHHHS--TTSHHHH------------HHHHHHHHHHHHTTCHHHHHHHHHHHHHCC
T ss_pred             cCcHHHHHHHHHHHHHHC--cCCCccH------------HHHHHHHHHHHHcCCcHHHHHHHHHHHhhC
Confidence            999999999999988753  2211000            127778888999999999999999887653

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=98.43  E-value=0.00015  Score=65.30  Aligned_cols=223  Identities=8%  Similarity=-0.079  Sum_probs=159.2

Q ss_pred             HHHcCCChhHHHHHHHHHHHhcCCCccHHHHHHHHhhcCHHHHHHHHHHHHhcC--CHHHHHHHHHHhhhCCCCcHHHHH
Q 036107          139 ALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRN--SVAHAYKVFLKFKDCISLSSQIFD  216 (441)
Q Consensus       139 ~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g--~~~~a~~~~~~~~~~~~~~~~~~~  216 (441)
                      ...+....++|+++++.+....|.              +..+|+.--..+...|  ++++++++++.+-...+-+..+|+
T Consensus        42 ~~~~~e~s~~aL~~t~~~L~~nP~--------------~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~  107 (306)
T 3dra_A           42 LMKAEEYSERALHITELGINELAS--------------HYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWN  107 (306)
T ss_dssp             HHHTTCCSHHHHHHHHHHHHHCTT--------------CHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHH
T ss_pred             HHHcCCCCHHHHHHHHHHHHHCcH--------------HHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHH
Confidence            334445557899999999886644              5567777777777788  999999999988544455666676


Q ss_pred             HHHHHH----Hhc---CCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHH--HHHHHHHHHHHcCCCCCHHHHHH
Q 036107          217 VLIHGW----CKT---RKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFR--KVDYTLKEMQEKGCKPSVITCTI  287 (441)
Q Consensus       217 ~li~~~----~~~---~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~--~a~~l~~~m~~~g~~p~~~~~~~  287 (441)
                      .--..+    .+.   +++++++++++.+.+.. +.|..+|+----.+.+.|.++  ++++.++++.+.... |...|+.
T Consensus       108 ~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~-N~sAW~~  185 (306)
T 3dra_A          108 YRQLIIGQIMELNNNDFDPYREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLK-NNSAWSH  185 (306)
T ss_dssp             HHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTT-CHHHHHH
T ss_pred             HHHHHHHHHHHhccccCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCC-CHHHHHH
Confidence            544444    444   78999999999998753 347788888888888888888  999999999887665 7888887


Q ss_pred             HHHHHHhcCC------HHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCccchHHHHHHHHHhcCChhH-HHHHHHHHH
Q 036107          288 VMHALEKAKQ------IYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGN-ALKLRQKIE  360 (441)
Q Consensus       288 ll~~~~~~~~------~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~~~li~~~~~~g~~~~-a~~~~~~m~  360 (441)
                      -.....+.++      ++++.+.++.+.... +-|...                |+-.-..+.+.|+... +..+..++.
T Consensus       186 R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~-p~n~Sa----------------W~y~~~ll~~~~~~~~~~~~~~~~~~  248 (306)
T 3dra_A          186 RFFLLFSKKHLATDNTIDEELNYVKDKIVKC-PQNPST----------------WNYLLGIHERFDRSITQLEEFSLQFV  248 (306)
T ss_dssp             HHHHHHSSGGGCCHHHHHHHHHHHHHHHHHC-SSCHHH----------------HHHHHHHHHHTTCCGGGGHHHHHTTE
T ss_pred             HHHHHHhccccchhhhHHHHHHHHHHHHHhC-CCCccH----------------HHHHHHHHHhcCCChHHHHHHHHHHH
Confidence            7777777776      888888888888754 224444                5555555555555333 455666554


Q ss_pred             HcC--CCCCHHHHHHHHHHHHhcCChhhHHHHHHHH
Q 036107          361 EDS--CKPDCETHARSLKMCCHKKRMKDGMLVLNLM  394 (441)
Q Consensus       361 ~~g--~~p~~~t~~~li~~~~~~g~~~~a~~~~~~~  394 (441)
                      +.+  -..+...+..+...+.+.|+.++|.++++.+
T Consensus       249 ~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l  284 (306)
T 3dra_A          249 DLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLL  284 (306)
T ss_dssp             EGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             hccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHH
Confidence            432  1346677888888888888888887755543

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=98.41  E-value=3.4e-05  Score=65.38  Aligned_cols=130  Identities=12%  Similarity=-0.031  Sum_probs=109.6

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHH
Q 036107          179 RAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYC  258 (441)
Q Consensus       179 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~  258 (441)
                      ..+..+-..+...|++++|.+.|++..   .|+...|..+...|.+.|++++|.+.|++..+.. +.+...|..+-..+.
T Consensus         7 ~~~~~~g~~~~~~~~~~~A~~~~~~a~---~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~   82 (213)
T 1hh8_A            7 ISLWNEGVLAADKKDWKGALDAFSAVQ---DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYY   82 (213)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHTSS---SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHc---CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHH
Confidence            345556677889999999999998873   5688899999999999999999999999988753 346678999999999


Q ss_pred             hcCCHHHHHHHHHHHHHcCCC--------------C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCC
Q 036107          259 REKDFRKVDYTLKEMQEKGCK--------------P-SVITCTIVMHALEKAKQIYEALKVYEKMKSDD  312 (441)
Q Consensus       259 ~~g~~~~a~~l~~~m~~~g~~--------------p-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g  312 (441)
                      ..|++++|...|++..+....              | ....+..+..++.+.|++++|...|+...+..
T Consensus        83 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~  151 (213)
T 1hh8_A           83 QTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK  151 (213)
T ss_dssp             HTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred             HcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcC
Confidence            999999999999999875321              1 23778889999999999999999999998864

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=98.41  E-value=3.5e-05  Score=65.65  Aligned_cols=176  Identities=11%  Similarity=-0.042  Sum_probs=134.1

Q ss_pred             HHHHHHHHHHHhcCCCccHHHHHHHHhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcHHHHHHHHHHHHhcC-
Q 036107          148 LMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTR-  226 (441)
Q Consensus       148 ~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~-  226 (441)
                      +|.+.|++..+.+                ++..+..+-..|...+++++|.+.|++.-+.  -+...+..|-..|.. + 
T Consensus         4 eA~~~~~~aa~~g----------------~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--g~~~a~~~lg~~y~~-~g   64 (212)
T 3rjv_A            4 EPGSQYQQQAEAG----------------DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQ--GDGDALALLAQLKIR-NP   64 (212)
T ss_dssp             CTTHHHHHHHHTT----------------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT--TCHHHHHHHHHHTTS-ST
T ss_pred             hHHHHHHHHHHCC----------------CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHc-CC
Confidence            4667777777766                8889999999999999999999999987432  245667777777777 6 


Q ss_pred             ---CHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHh----
Q 036107          227 ---KSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCR----EKDFRKVDYTLKEMQEKGCK-PSVITCTIVMHALEK----  294 (441)
Q Consensus       227 ---~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~a~~l~~~m~~~g~~-p~~~~~~~ll~~~~~----  294 (441)
                         ++++|.++|++..+.|   +...+..|-..|..    .+++++|...|++..+.|.. .+...+..|-..|..    
T Consensus        65 ~~~~~~~A~~~~~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~  141 (212)
T 3rjv_A           65 QQADYPQARQLAEKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHG  141 (212)
T ss_dssp             TSCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSS
T ss_pred             CCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCC
Confidence               8999999999998764   66777777777776    78999999999998887642 126778888888888    


Q ss_pred             cCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCccchHHHHHHHHHhc------CChhHHHHHHHHHHHcC
Q 036107          295 AKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVR------SEEGNALKLRQKIEEDS  363 (441)
Q Consensus       295 ~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~~~li~~~~~~------g~~~~a~~~~~~m~~~g  363 (441)
                      .+++++|...|+...+.+-.+  ..                +..|-..|...      .+.++|+..|++..+.|
T Consensus       142 ~~d~~~A~~~~~~A~~~~~~~--~a----------------~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g  198 (212)
T 3rjv_A          142 PEDDVKASEYFKGSSSLSRTG--YA----------------EYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG  198 (212)
T ss_dssp             SCCHHHHHHHHHHHHHTSCTT--HH----------------HHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred             CCCHHHHHHHHHHHHHcCCCH--HH----------------HHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence            889999999999998862222  22                44444444432      27889999998887776

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=98.41  E-value=2.2e-05  Score=66.92  Aligned_cols=164  Identities=12%  Similarity=-0.016  Sum_probs=130.8

Q ss_pred             CHHHHHHHHHHHHcCCChhHHHHHHHHHHHhcCCCccHHHHHHHHhhcCHHHHHHHHHHHHhcC----CHHHHHHHHHHh
Q 036107          129 TPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRN----SVAHAYKVFLKF  204 (441)
Q Consensus       129 ~~~~y~~li~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g----~~~~a~~~~~~~  204 (441)
                      ++.++..+-..|...+++++|.+.|++..+.+                ++..+..|-..|.. +    +.++|.+.|++.
T Consensus        17 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g----------------~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A   79 (212)
T 3rjv_A           17 DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG----------------DGDALALLAQLKIR-NPQQADYPQARQLAEKA   79 (212)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT----------------CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC----------------CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHH
Confidence            77888888888888999999999999988876                77888888888887 6    899999999887


Q ss_pred             hhCCCCcHHHHHHHHHHHHh----cCCHHHHHHHHHHHhhCCCC-CCHhhHHHHHHHHHh----cCCHHHHHHHHHHHHH
Q 036107          205 KDCISLSSQIFDVLIHGWCK----TRKSDYAQKAMKEMFQHGFS-PDGVSYTCFIEHYCR----EKDFRKVDYTLKEMQE  275 (441)
Q Consensus       205 ~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~g~~-p~~~~~~~li~~~~~----~g~~~~a~~l~~~m~~  275 (441)
                      -+.  -+...+..|-..|..    .+++++|.++|++..+.|.. .+...+..|-..|..    .+++++|...|++..+
T Consensus        80 ~~~--g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~  157 (212)
T 3rjv_A           80 VEA--GSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSS  157 (212)
T ss_dssp             HHT--TCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHH
T ss_pred             HHC--CCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH
Confidence            431  355667777777776    88999999999999887532 126778888888888    7899999999999987


Q ss_pred             cCCCCCHHHHHHHHHHHHhc-C-----CHHHHHHHHHHHhhCCC
Q 036107          276 KGCKPSVITCTIVMHALEKA-K-----QIYEALKVYEKMKSDDC  313 (441)
Q Consensus       276 ~g~~p~~~~~~~ll~~~~~~-~-----~~~~a~~~~~~m~~~g~  313 (441)
                      .+  .+...+..|-..|... |     ++++|...|+...+.|.
T Consensus       158 ~~--~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~  199 (212)
T 3rjv_A          158 LS--RTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF  199 (212)
T ss_dssp             TS--CTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred             cC--CCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence            62  2344666676777653 3     89999999999988774

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=98.40  E-value=1.1e-05  Score=72.47  Aligned_cols=165  Identities=10%  Similarity=-0.022  Sum_probs=129.9

Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHH-H
Q 036107          177 DTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFI-E  255 (441)
Q Consensus       177 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li-~  255 (441)
                      +...+..+-..+.+.|++++|...|++.-...+-+...+..+...+.+.|++++|...|++....  .|+........ .
T Consensus       116 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~~~~~  193 (287)
T 3qou_A          116 EEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ--DQDTRYQGLVAQI  193 (287)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG--GCSHHHHHHHHHH
T ss_pred             chhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh--hcchHHHHHHHHH
Confidence            44566777788899999999999999985545567788999999999999999999999998764  46554333322 2


Q ss_pred             HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC-CHHHHHHHHHHHHhcCccc
Q 036107          256 HYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLT-DTSFYSSLIFILSKAVRFL  334 (441)
Q Consensus       256 ~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~-~~~~~~~li~~~~~~g~~~  334 (441)
                      .+.+.++.++|...+++..+... .+...+..+-..+...|++++|...|.++.+..-.. +.                .
T Consensus       194 ~l~~~~~~~~a~~~l~~al~~~P-~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~----------------~  256 (287)
T 3qou_A          194 ELLXQAADTPEIQQLQQQVAENP-EDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADG----------------Q  256 (287)
T ss_dssp             HHHHHHTSCHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGG----------------H
T ss_pred             HHHhhcccCccHHHHHHHHhcCC-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccc----------------h
Confidence            36677888889999998877643 368889999999999999999999999998854221 12                2


Q ss_pred             hHHHHHHHHHhcCChhHHHHHHHHHH
Q 036107          335 IYNTMISSACVRSEEGNALKLRQKIE  360 (441)
Q Consensus       335 ~~~~li~~~~~~g~~~~a~~~~~~m~  360 (441)
                      .+..+...|...|+.++|...+++-.
T Consensus       257 a~~~l~~~~~~~g~~~~a~~~~r~al  282 (287)
T 3qou_A          257 TRXTFQEILAALGTGDALASXYRRQL  282 (287)
T ss_dssp             HHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCCCcHHHHHHHHH
Confidence            37888888888898899988887654

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=98.40  E-value=4.4e-05  Score=64.69  Aligned_cols=129  Identities=8%  Similarity=-0.130  Sum_probs=107.9

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 036107          214 IFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALE  293 (441)
Q Consensus       214 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~  293 (441)
                      .+..+-..+...|++++|.+.|++..    .|+...|..+...+.+.|++++|...|++..+.. +.+...|..+..++.
T Consensus         8 ~~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~   82 (213)
T 1hh8_A            8 SLWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYY   82 (213)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHH
Confidence            34556677889999999999999874    5788999999999999999999999999988764 346788999999999


Q ss_pred             hcCCHHHHHHHHHHHhhCCC--------------CCCHHHHHHHHHHHHhcCccchHHHHHHHHHhcCChhHHHHHHHHH
Q 036107          294 KAKQIYEALKVYEKMKSDDC--------------LTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKI  359 (441)
Q Consensus       294 ~~~~~~~a~~~~~~m~~~g~--------------~~~~~~~~~li~~~~~~g~~~~~~~li~~~~~~g~~~~a~~~~~~m  359 (441)
                      ..|++++|...|+...+..-              .|+..               ..|..+...|...|++++|.+.|++.
T Consensus        83 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~l~~~~~~~g~~~~A~~~~~~a  147 (213)
T 1hh8_A           83 QTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFAC---------------EVLYNIAFMYAKKEEWKKAEEQLALA  147 (213)
T ss_dssp             HTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHH---------------HHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccch---------------HHHHHHHHHHHHccCHHHHHHHHHHH
Confidence            99999999999999987432              12111               23788888999999999999999998


Q ss_pred             HHc
Q 036107          360 EED  362 (441)
Q Consensus       360 ~~~  362 (441)
                      .+.
T Consensus       148 l~~  150 (213)
T 1hh8_A          148 TSM  150 (213)
T ss_dssp             HTT
T ss_pred             HHc
Confidence            865

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=98.40  E-value=9.5e-06  Score=80.43  Aligned_cols=154  Identities=7%  Similarity=-0.082  Sum_probs=113.5

Q ss_pred             cCCHHHHHHHHHHhhhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHH
Q 036107          191 RNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTL  270 (441)
Q Consensus       191 ~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~l~  270 (441)
                      .|++++|.+.|++.-+..+.+...+..+-..|.+.|++++|.+.|++..+.. +.+...|..+-..+...|++++|.+.+
T Consensus         2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~   80 (568)
T 2vsy_A            2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVLL   80 (568)
T ss_dssp             -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence            4788999999988755445567889999999999999999999999998753 235778999999999999999999999


Q ss_pred             HHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCccchHHHHHHHHHhc---C
Q 036107          271 KEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVR---S  347 (441)
Q Consensus       271 ~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~~~li~~~~~~---g  347 (441)
                      ++..+... -+...+..+..++.+.|++++|.+.|++..+..- .+...                +..+...+...   |
T Consensus        81 ~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~----------------~~~l~~~~~~~~~~g  142 (568)
T 2vsy_A           81 QQASDAAP-EHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLP-EEPYI----------------TAQLLNWRRRLCDWR  142 (568)
T ss_dssp             HHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHH----------------HHHHHHHHHHTTCCT
T ss_pred             HHHHhcCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHH----------------HHHHHHHHHHhhccc
Confidence            99987643 3678999999999999999999999999887532 22333                67777788888   9


Q ss_pred             ChhHHHHHHHHHHHcC
Q 036107          348 EEGNALKLRQKIEEDS  363 (441)
Q Consensus       348 ~~~~a~~~~~~m~~~g  363 (441)
                      +.++|.+.+++..+.+
T Consensus       143 ~~~~A~~~~~~al~~~  158 (568)
T 2vsy_A          143 ALDVLSAQVRAAVAQG  158 (568)
T ss_dssp             THHHHHHHHHHHHHHT
T ss_pred             cHHHHHHHHHHHHhcC
Confidence            9999999999987654

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=98.39  E-value=3.1e-06  Score=85.83  Aligned_cols=153  Identities=8%  Similarity=-0.034  Sum_probs=130.8

Q ss_pred             HcCCChhHHHHHHHHHH--------HhcCCCccHHHHHHHHhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcH
Q 036107          141 GKSKKFGLMWELVKEID--------ELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSS  212 (441)
Q Consensus       141 ~~~~~~~~a~~l~~~m~--------~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~  212 (441)
                      ...|++++|++.+++..        +..   |.           +...+..+...+.+.|++++|.+.|++.-...+.+.
T Consensus       402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~---p~-----------~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~  467 (681)
T 2pzi_A          402 TVLSQPVQTLDSLRAARHGALDADGVDF---SE-----------SVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRW  467 (681)
T ss_dssp             TTTCCHHHHHHHHHHHHTC-------CC---TT-----------CSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCH
T ss_pred             ccccCHHHHHHHHHHhhhhccccccccc---cc-----------chhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchH
Confidence            67899999999999987        322   11           567888889999999999999999999855445677


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC-CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 036107          213 QIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSP-DGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHA  291 (441)
Q Consensus       213 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~  291 (441)
                      ..|..+-.+|.+.|++++|.+.|++..+.  .| +...|..+-.++.+.|++++ .+.|++..+..- -+...|..+-.+
T Consensus       468 ~a~~~lg~~~~~~g~~~~A~~~~~~al~l--~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P-~~~~a~~~lg~~  543 (681)
T 2pzi_A          468 RLVWYRAVAELLTGDYDSATKHFTEVLDT--FPGELAPKLALAATAELAGNTDE-HKFYQTVWSTND-GVISAAFGLARA  543 (681)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHH--STTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCC-chHHHHHHHHHH
Confidence            88999999999999999999999999874  34 56788899999999999999 999999987643 267889999999


Q ss_pred             HHhcCCHHHHHHHHHHHhhC
Q 036107          292 LEKAKQIYEALKVYEKMKSD  311 (441)
Q Consensus       292 ~~~~~~~~~a~~~~~~m~~~  311 (441)
                      +.+.|++++|.+.|++..+.
T Consensus       544 ~~~~g~~~~A~~~~~~al~l  563 (681)
T 2pzi_A          544 RSAEGDRVGAVRTLDEVPPT  563 (681)
T ss_dssp             HHHTTCHHHHHHHHHTSCTT
T ss_pred             HHHcCCHHHHHHHHHhhccc
Confidence            99999999999999988875

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=98.36  E-value=7.6e-06  Score=68.76  Aligned_cols=160  Identities=12%  Similarity=-0.041  Sum_probs=114.9

Q ss_pred             HhcCCHHHHHHHHHHhhhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhh----CCCCC-CHhhHHHHHHHHHhcCCH
Q 036107          189 VKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQ----HGFSP-DGVSYTCFIEHYCREKDF  263 (441)
Q Consensus       189 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~----~g~~p-~~~~~~~li~~~~~~g~~  263 (441)
                      ...|++++|.++++.+.........++..+-..+...|++++|...+++...    .|..| ...++..+-..+...|++
T Consensus         3 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~   82 (203)
T 3gw4_A            3 FEAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNW   82 (203)
T ss_dssp             ----CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred             cccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCH
Confidence            4679999999966655443335677888999999999999999999988875    22222 346788888899999999


Q ss_pred             HHHHHHHHHHHHc----CCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCC-CCCHHHHHHHHHHHHhcCccchH
Q 036107          264 RKVDYTLKEMQEK----GCKP--SVITCTIVMHALEKAKQIYEALKVYEKMKSDDC-LTDTSFYSSLIFILSKAVRFLIY  336 (441)
Q Consensus       264 ~~a~~l~~~m~~~----g~~p--~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~-~~~~~~~~~li~~~~~~g~~~~~  336 (441)
                      ++|...+++..+.    +-.|  ....+..+-..+...|++++|...+++..+..- ..+.....            .++
T Consensus        83 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~------------~~~  150 (203)
T 3gw4_A           83 DAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIA------------CAF  150 (203)
T ss_dssp             HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH------------HHH
T ss_pred             HHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHH------------HHH
Confidence            9999999987553    3122  245678888899999999999999998764210 11111100            236


Q ss_pred             HHHHHHHHhcCChhHHHHHHHHHH
Q 036107          337 NTMISSACVRSEEGNALKLRQKIE  360 (441)
Q Consensus       337 ~~li~~~~~~g~~~~a~~~~~~m~  360 (441)
                      ..+-..+...|++++|.+.+++..
T Consensus       151 ~~la~~~~~~g~~~~A~~~~~~al  174 (203)
T 3gw4_A          151 RGLGDLAQQEKNLLEAQQHWLRAR  174 (203)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHCcCHHHHHHHHHHHH
Confidence            777788888999999998888764

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=98.36  E-value=3e-06  Score=67.97  Aligned_cols=142  Identities=11%  Similarity=-0.075  Sum_probs=105.6

Q ss_pred             HHHhcCCHHHHHHHHHHhhhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHH
Q 036107          187 TLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKV  266 (441)
Q Consensus       187 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a  266 (441)
                      .+...|++++|++.+.......+-+...+-.+-..|.+.|++++|.+.|++..+.. +-+..+|..+-..+.+.|++++|
T Consensus         6 ~~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~~A   84 (150)
T 4ga2_A            6 MRRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ-ERDPKAHRFLGLLYELEENTDKA   84 (150)
T ss_dssp             -CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCchHHH
Confidence            34456889999999987743323344556678889999999999999999998743 23578899999999999999999


Q ss_pred             HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHH-HHHHhhCCCCCCHHHHHHHHHHHHhcC
Q 036107          267 DYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKV-YEKMKSDDCLTDTSFYSSLIFILSKAV  331 (441)
Q Consensus       267 ~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~-~~~m~~~g~~~~~~~~~~li~~~~~~g  331 (441)
                      ...|++..+... -+...|..+...|.+.|+++++.+. ++...+.. +-+..+|...-..+.+.|
T Consensus        85 ~~~~~~al~~~p-~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~-P~~~~~~~l~~~ll~~~G  148 (150)
T 4ga2_A           85 VECYRRSVELNP-TQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLF-PGSPAVYKLKEQLLDCEG  148 (150)
T ss_dssp             HHHHHHHHHHCT-TCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTCC
T ss_pred             HHHHHHHHHhCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhC
Confidence            999999988643 2678899999999999999876655 57776642 224555544444444443

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=98.34  E-value=2.5e-05  Score=59.35  Aligned_cols=98  Identities=12%  Similarity=0.106  Sum_probs=53.4

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHH
Q 036107          178 TRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHY  257 (441)
Q Consensus       178 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~  257 (441)
                      ...+..+...+...|++++|.+.|++.....+.+...+..+...+.+.|++++|..+|+++.+.. +.+..++..+...+
T Consensus         9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~   87 (125)
T 1na0_A            9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAY   87 (125)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHH
Confidence            34455555556666666666666655533233344555555556666666666666666555432 12344555555555


Q ss_pred             HhcCCHHHHHHHHHHHHHc
Q 036107          258 CREKDFRKVDYTLKEMQEK  276 (441)
Q Consensus       258 ~~~g~~~~a~~l~~~m~~~  276 (441)
                      ...|++++|...|+++.+.
T Consensus        88 ~~~~~~~~A~~~~~~~~~~  106 (125)
T 1na0_A           88 YKQGDYDEAIEYYQKALEL  106 (125)
T ss_dssp             HHTTCHHHHHHHHHHHHHH
T ss_pred             HHhcCHHHHHHHHHHHHHh
Confidence            5556666666665555443

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=98.34  E-value=1.1e-05  Score=64.59  Aligned_cols=143  Identities=12%  Similarity=0.016  Sum_probs=94.1

Q ss_pred             HHhcCCChHHHHHHHhhhhhHhhhhcCCCCCC-HHHHHHHHHHHHcCCChhHHHHHHHHHHHhcCCCccHHHHHHHHhhc
Q 036107           98 LRKRYPSPDKVVEALKCFCFTWAKTQTGYMHT-PETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRL  176 (441)
Q Consensus        98 l~~~~~~~g~~~~A~~~~~~~~~~~~~g~~p~-~~~y~~li~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~  176 (441)
                      |..++.+.|++++|+..+...     ....|+ ...+-.+-..|.+.|++++|.+.|++..+..|.              
T Consensus         3 LG~~~~~~~~~e~ai~~~~~a-----~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~--------------   63 (150)
T 4ga2_A            3 LGSMRRSKADVERYIASVQGS-----TPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQER--------------   63 (150)
T ss_dssp             ----CCCHHHHHHHHHHHHHH-----SCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--------------
T ss_pred             hHHHHHHcChHHHHHHHHHHh-----cccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--------------
Confidence            445677888888888877422     112222 334556677788888888888888888775532              


Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcHHHHHHHHHHHHhcCCHHHHHHH-HHHHhhCCCCC-CHhhHHHHH
Q 036107          177 DTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKA-MKEMFQHGFSP-DGVSYTCFI  254 (441)
Q Consensus       177 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~-~~~m~~~g~~p-~~~~~~~li  254 (441)
                      +..+|..+-..+.+.|++++|...|+..-+-.+-+...|..+-..|.+.|++++|.+. +++..+.  .| +..+|...-
T Consensus        64 ~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l--~P~~~~~~~l~~  141 (150)
T 4ga2_A           64 DPKAHRFLGLLYELEENTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKL--FPGSPAVYKLKE  141 (150)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHH--STTCHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHh--CcCCHHHHHHHH
Confidence            6778888888888888888888888877443345667778888888888887665554 4665552  34 345565555


Q ss_pred             HHHHhcC
Q 036107          255 EHYCREK  261 (441)
Q Consensus       255 ~~~~~~g  261 (441)
                      ..+...|
T Consensus       142 ~ll~~~G  148 (150)
T 4ga2_A          142 QLLDCEG  148 (150)
T ss_dssp             HHHHTCC
T ss_pred             HHHHHhC
Confidence            5555554

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=98.34  E-value=2.2e-05  Score=70.60  Aligned_cols=171  Identities=9%  Similarity=-0.012  Sum_probs=125.2

Q ss_pred             HHHHHHHHHHcCCChhHHHHHHHHHHHhcCCCccHHHHHHHHhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhh--CCC
Q 036107          132 TYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKD--CIS  209 (441)
Q Consensus       132 ~y~~li~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~--~~~  209 (441)
                      .+...+..+...|++++|.+++++.....+..+....        -...+..+...+...|++++|+..|+..-.  .-.
T Consensus        77 ~l~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~--------~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~  148 (293)
T 3u3w_A           77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQ--------FLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTG  148 (293)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHH--------HHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCC
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHhccccCChHHHH--------HHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhccc
Confidence            3444577889999999999999998874422221100        012344566677788899999999988732  111


Q ss_pred             Cc----HHHHHHHHHHHHhcCCHHHHHHHHHHHhh----C-CCCCC-HhhHHHHHHHHHhcCCHHHHHHHHHHHHHc---
Q 036107          210 LS----SQIFDVLIHGWCKTRKSDYAQKAMKEMFQ----H-GFSPD-GVSYTCFIEHYCREKDFRKVDYTLKEMQEK---  276 (441)
Q Consensus       210 ~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~----~-g~~p~-~~~~~~li~~~~~~g~~~~a~~l~~~m~~~---  276 (441)
                      ++    ..+++.+-..|...|++++|...|++..+    . +..+. ..+|..+...|.+.|++++|...+++..+.   
T Consensus       149 ~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~  228 (293)
T 3u3w_A          149 IDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCR  228 (293)
T ss_dssp             SCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence            22    34689999999999999999999999873    1 22222 347889999999999999999999987542   


Q ss_pred             -CCCCC-HHHHHHHHHHHHhcCC-HHHHHHHHHHHhh
Q 036107          277 -GCKPS-VITCTIVMHALEKAKQ-IYEALKVYEKMKS  310 (441)
Q Consensus       277 -g~~p~-~~~~~~ll~~~~~~~~-~~~a~~~~~~m~~  310 (441)
                       +..+. ..+|..+-.+|.+.|+ +++|.+.|++...
T Consensus       229 ~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~  265 (293)
T 3u3w_A          229 INSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASF  265 (293)
T ss_dssp             TTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred             cCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence             33333 6788999999999995 6999998887654

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=98.33  E-value=1.4e-05  Score=72.46  Aligned_cols=197  Identities=8%  Similarity=0.041  Sum_probs=131.4

Q ss_pred             HHHHHhcCCChHHHHHHHhhhhhHhhhh-cCCCCCC-HHHHHHHHHHHHcCCChhHHHHHHHHHHHhcCCCccHHHHHHH
Q 036107           95 SEILRKRYPSPDKVVEALKCFCFTWAKT-QTGYMHT-PETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTV  172 (441)
Q Consensus        95 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~g~~p~-~~~y~~li~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~~  172 (441)
                      ++.....|...|++++|+..|....... ..+-.+. ..+|+.+...|.+.|++++|++.|++........-...     
T Consensus        39 ~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~-----  113 (307)
T 2ifu_A           39 YAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPD-----  113 (307)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHH-----
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHH-----
Confidence            3333445666778888888776332221 1121111 45888999999999999999999998766421111000     


Q ss_pred             HhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhh---C-CCC--cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC----C
Q 036107          173 MRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKD---C-ISL--SSQIFDVLIHGWCKTRKSDYAQKAMKEMFQH----G  242 (441)
Q Consensus       173 ~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~---~-~~~--~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----g  242 (441)
                         .-..++..+-..|.+ |++++|++.|++.-.   . -.+  ...+++.+-..|.+.|++++|...|++..+.    +
T Consensus       114 ---~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~  189 (307)
T 2ifu_A          114 ---TAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEME  189 (307)
T ss_dssp             ---HHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred             ---HHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcC
Confidence               023567778888888 999999999987622   1 111  2457888899999999999999999988752    2


Q ss_pred             CCCC-HhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC------HHHHHHHHHHHHhcCCHHHHHHH
Q 036107          243 FSPD-GVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPS------VITCTIVMHALEKAKQIYEALKV  304 (441)
Q Consensus       243 ~~p~-~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~------~~~~~~ll~~~~~~~~~~~a~~~  304 (441)
                      ..+. ...+..+...+...|++++|...|++.. .  .|+      ......++.++ ..|+.+...++
T Consensus       190 ~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~--~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~~  254 (307)
T 2ifu_A          190 NYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-S--IPGFSGSEDCAALEDLLQAY-DEQDEEQLLRV  254 (307)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-T--STTSTTSHHHHHHHHHHHHH-HTTCHHHHHHH
T ss_pred             ChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-C--CCCCCCCHHHHHHHHHHHHH-HhcCHHHHHHH
Confidence            2122 2366677777888899999999999987 3  222      22345556655 56777666653

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=98.33  E-value=9.7e-05  Score=74.07  Aligned_cols=217  Identities=12%  Similarity=0.062  Sum_probs=152.2

Q ss_pred             CHHHHHHHHHHHHcCCChhHHH-HHHHHHHHhcCCCccHHHHHHHHhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhC
Q 036107          129 TPETYNAMVEALGKSKKFGLMW-ELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDC  207 (441)
Q Consensus       129 ~~~~y~~li~~~~~~~~~~~a~-~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~  207 (441)
                      +...|-.....+.+.|+.++|. ++|+......|.              +...+-..+...-+.|+++.|.++|+.+...
T Consensus       342 ~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~--------------s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~  407 (679)
T 4e6h_A          342 APEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPN--------------SAVLAFSLSEQYELNTKIPEIETTILSCIDR  407 (679)
T ss_dssp             CHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTT--------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCC--------------CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence            4455555555566667777786 888877653211              4555667778888899999999999887431


Q ss_pred             C----------CC------------cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC-CC-CCCHhhHHHHHHHHHh-cCC
Q 036107          208 I----------SL------------SSQIFDVLIHGWCKTRKSDYAQKAMKEMFQH-GF-SPDGVSYTCFIEHYCR-EKD  262 (441)
Q Consensus       208 ~----------~~------------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-g~-~p~~~~~~~li~~~~~-~g~  262 (441)
                      +          .|            ...+|-..+....+.|+.+.|..+|.+..+. +. .+......+.+.  .+ .++
T Consensus       408 l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE--~~~~~d  485 (679)
T 4e6h_A          408 IHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIE--YHISKD  485 (679)
T ss_dssp             HHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHH--HTTTSC
T ss_pred             HHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHH--HHhCCC
Confidence            1          13            2346888888888889999999999999875 21 122222223333  23 355


Q ss_pred             HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCccchHHHHHHH
Q 036107          263 FRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISS  342 (441)
Q Consensus       263 ~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~~~li~~  342 (441)
                      .+.|.++|+...+. .+-+...|...+......|+.+.|..+|+........+....              ..|...+.-
T Consensus       486 ~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~--------------~lw~~~~~f  550 (679)
T 4e6h_A          486 TKTACKVLELGLKY-FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLK--------------MIFQKVIFF  550 (679)
T ss_dssp             CHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHH--------------HHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH-CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHH--------------HHHHHHHHH
Confidence            89999999998776 333566677888888889999999999999988654322211              348888888


Q ss_pred             HHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 036107          343 ACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMC  378 (441)
Q Consensus       343 ~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~  378 (441)
                      -.+.|+.+.+.++.+++.+.  .|+......+++-|
T Consensus       551 E~~~G~~~~~~~v~~R~~~~--~P~~~~~~~f~~ry  584 (679)
T 4e6h_A          551 ESKVGSLNSVRTLEKRFFEK--FPEVNKLEEFTNKY  584 (679)
T ss_dssp             HHHTCCSHHHHHHHHHHHHH--STTCCHHHHHHHHT
T ss_pred             HHHcCCHHHHHHHHHHHHHh--CCCCcHHHHHHHHh
Confidence            88999999999999999876  45555555555544

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=98.32  E-value=3.1e-05  Score=62.53  Aligned_cols=132  Identities=11%  Similarity=0.010  Sum_probs=106.5

Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHH
Q 036107          177 DTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEH  256 (441)
Q Consensus       177 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~  256 (441)
                      ....+..+...+...|++++|...|+......+.+...+..+...+...|++++|.+.|++..+.. +.+...|..+...
T Consensus        12 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~   90 (166)
T 1a17_A           12 RAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAAS   90 (166)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHH
Confidence            346777788888999999999999998855445678889999999999999999999999988753 2357788889999


Q ss_pred             HHhcCCHHHHHHHHHHHHHcCCCCCHHHH--HHHHHHHHhcCCHHHHHHHHHHHhh
Q 036107          257 YCREKDFRKVDYTLKEMQEKGCKPSVITC--TIVMHALEKAKQIYEALKVYEKMKS  310 (441)
Q Consensus       257 ~~~~g~~~~a~~l~~~m~~~g~~p~~~~~--~~ll~~~~~~~~~~~a~~~~~~m~~  310 (441)
                      +...|++++|...|++..+.... +...+  ..+...+.+.|++++|...+....+
T Consensus        91 ~~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~  145 (166)
T 1a17_A           91 NMALGKFRAALRDYETVVKVKPH-DKDAKMKYQECNKIVKQKAFERAIAGDEHKRS  145 (166)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence            99999999999999998876432 44444  3444457788999999999887643

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=98.32  E-value=4.9e-06  Score=84.36  Aligned_cols=177  Identities=12%  Similarity=-0.035  Sum_probs=137.8

Q ss_pred             CChHHHHHHHhhhhhHhh---hhc-CCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHhcCCCccHHHHHHHHhhcCH
Q 036107          103 PSPDKVVEALKCFCFTWA---KTQ-TGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDT  178 (441)
Q Consensus       103 ~~~g~~~~A~~~~~~~~~---~~~-~g~~p~~~~y~~li~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~  178 (441)
                      ...|+.++|++.++....   ... .....+...|..+-.++.+.|++++|.+.|++..+..+.              +.
T Consensus       402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~--------------~~  467 (681)
T 2pzi_A          402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGW--------------RW  467 (681)
T ss_dssp             TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCC--------------CH
T ss_pred             ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcc--------------hH
Confidence            667888999998864330   001 122235678889999999999999999999999886533              67


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHH
Q 036107          179 RAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYC  258 (441)
Q Consensus       179 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~  258 (441)
                      ..+..+-.++...|++++|.+.|++.-...+-+...|..+-.+|.+.|++++ .+.|++..+.. +-+...|..+-.++.
T Consensus       468 ~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~  545 (681)
T 2pzi_A          468 RLVWYRAVAELLTGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTN-DGVISAAFGLARARS  545 (681)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-CchHHHHHHHHHHHH
Confidence            8899999999999999999999999855445567789999999999999999 99999988743 225678999999999


Q ss_pred             hcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCC
Q 036107          259 REKDFRKVDYTLKEMQEKGCKPS-VITCTIVMHALEKAKQ  297 (441)
Q Consensus       259 ~~g~~~~a~~l~~~m~~~g~~p~-~~~~~~ll~~~~~~~~  297 (441)
                      +.|++++|.+.|++..+.  .|+ ...+..+..++...++
T Consensus       546 ~~g~~~~A~~~~~~al~l--~P~~~~a~~~~~~~~~~~~~  583 (681)
T 2pzi_A          546 AEGDRVGAVRTLDEVPPT--SRHFTTARLTSAVTLLSGRS  583 (681)
T ss_dssp             HTTCHHHHHHHHHTSCTT--STTHHHHHHHHHHHTC----
T ss_pred             HcCCHHHHHHHHHhhccc--CcccHHHHHHHHHHHHccCC
Confidence            999999999999988764  344 5677777777766554

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=98.31  E-value=3.2e-05  Score=62.44  Aligned_cols=131  Identities=8%  Similarity=-0.061  Sum_probs=105.5

Q ss_pred             HHHHHHHHHHHHcCCChhHHHHHHHHHHHhcCCCccHHHHHHHHhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCC
Q 036107          130 PETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCIS  209 (441)
Q Consensus       130 ~~~y~~li~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~  209 (441)
                      ...|..+-..+...|++++|...|++.....+.              +..++..+...+...|++++|.+.+++.....+
T Consensus        13 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~--------------~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~   78 (166)
T 1a17_A           13 AEELKTQANDYFKAKDYENAIKFYSQAIELNPS--------------NAIYYGNRSLAYLRTECYGYALGDATRAIELDK   78 (166)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT--------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC--------------ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc
Confidence            456778888899999999999999998885522              678888899999999999999999998855455


Q ss_pred             CcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHH--HHHHHHHhcCCHHHHHHHHHHHHH
Q 036107          210 LSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYT--CFIEHYCREKDFRKVDYTLKEMQE  275 (441)
Q Consensus       210 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~--~li~~~~~~g~~~~a~~l~~~m~~  275 (441)
                      .+...+..+...+.+.|++++|.+.|++..+... .+...+.  .+...+.+.|++++|.+.+....+
T Consensus        79 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~  145 (166)
T 1a17_A           79 KYIKGYYRRAASNMALGKFRAALRDYETVVKVKP-HDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS  145 (166)
T ss_dssp             TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence            6778899999999999999999999999987421 2344443  344447788999999999887643

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=98.31  E-value=8e-06  Score=68.62  Aligned_cols=156  Identities=8%  Similarity=-0.048  Sum_probs=113.4

Q ss_pred             HcCCChhHHHHHHHHHHHhcCCCccHHHHHHHHhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhh------CCCCcHHH
Q 036107          141 GKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKD------CISLSSQI  214 (441)
Q Consensus       141 ~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~------~~~~~~~~  214 (441)
                      ...|++++|.++++.... .  ..           ....++..+-..+...|++++|...+++...      .......+
T Consensus         3 ~~~g~~~~A~~~~~~~~~-~--~~-----------~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~   68 (203)
T 3gw4_A            3 FEAHDYALAERQAQALLA-H--PA-----------TASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRA   68 (203)
T ss_dssp             ----CHHHHHHHHHHHHT-S--TT-----------THHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred             cccccHHHHHHHHHHhcC-C--hH-----------HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHH
Confidence            467899999995555533 1  11           1467888889999999999999999988632      22234556


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHhhC----CCCC--CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCC-CHH
Q 036107          215 FDVLIHGWCKTRKSDYAQKAMKEMFQH----GFSP--DGVSYTCFIEHYCREKDFRKVDYTLKEMQEK----GCKP-SVI  283 (441)
Q Consensus       215 ~~~li~~~~~~~~~~~a~~~~~~m~~~----g~~p--~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~----g~~p-~~~  283 (441)
                      +..+-..|...|++++|.+.+++..+.    |-.|  ....+..+-..+...|++++|...+++..+.    +... -..
T Consensus        69 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~  148 (203)
T 3gw4_A           69 LHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIAC  148 (203)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHH
Confidence            788888999999999999999887652    2111  2356788888999999999999999987642    2111 134


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 036107          284 TCTIVMHALEKAKQIYEALKVYEKMKS  310 (441)
Q Consensus       284 ~~~~ll~~~~~~~~~~~a~~~~~~m~~  310 (441)
                      ++..+-..+...|++++|.+.+++..+
T Consensus       149 ~~~~la~~~~~~g~~~~A~~~~~~al~  175 (203)
T 3gw4_A          149 AFRGLGDLAQQEKNLLEAQQHWLRARD  175 (203)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence            567788889999999999999987765

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=98.29  E-value=3.6e-05  Score=58.49  Aligned_cols=114  Identities=13%  Similarity=0.077  Sum_probs=92.1

Q ss_pred             HHHHHHHHHHHHcCCChhHHHHHHHHHHHhcCCCccHHHHHHHHhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCC
Q 036107          130 PETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCIS  209 (441)
Q Consensus       130 ~~~y~~li~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~  209 (441)
                      ...|..+...+...|++++|.+.++++....+.              +..++..+...+.+.|++++|...|+.+....+
T Consensus         9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~--------------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~   74 (125)
T 1na0_A            9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN--------------NAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP   74 (125)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC--------------cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC
Confidence            568888899999999999999999999885422              667888999999999999999999999855455


Q ss_pred             CcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHH
Q 036107          210 LSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYC  258 (441)
Q Consensus       210 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~  258 (441)
                      .+..++..+...+.+.|++++|.+.|+++.+.. +.+...+..+-..+.
T Consensus        75 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~  122 (125)
T 1na0_A           75 NNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAKQNLGNAKQ  122 (125)
T ss_dssp             TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHH
Confidence            677889999999999999999999999998742 123444444444443

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=98.23  E-value=3.8e-05  Score=58.87  Aligned_cols=119  Identities=9%  Similarity=-0.054  Sum_probs=73.2

Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHH
Q 036107          177 DTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEH  256 (441)
Q Consensus       177 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~  256 (441)
                      +...+..+...+...|++++|.+.|+......+.+...+..+...+...|++++|.+.+++..+.. +.+...+..+...
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~   89 (131)
T 2vyi_A           11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGLA   89 (131)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHHH
Confidence            345566666666677777777777766643334455666666667777777777777777666532 2235566666666


Q ss_pred             HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 036107          257 YCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQ  297 (441)
Q Consensus       257 ~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~  297 (441)
                      +...|++++|...|++..+... .+...+..+..++.+.|+
T Consensus        90 ~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~~l~~~~~~~~~  129 (131)
T 2vyi_A           90 LSSLNKHVEAVAYYKKALELDP-DNETYKSNLKIAELKLRE  129 (131)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHTT
T ss_pred             HHHhCCHHHHHHHHHHHHhcCc-cchHHHHHHHHHHHHHhc
Confidence            6777777777777776655432 245555555555555554

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=98.21  E-value=0.00064  Score=60.86  Aligned_cols=168  Identities=11%  Similarity=-0.020  Sum_probs=121.3

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcH------HHHHHHHHHHHhcCCHHHHHHHHHHHhhCCC---CCC--
Q 036107          178 TRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSS------QIFDVLIHGWCKTRKSDYAQKAMKEMFQHGF---SPD--  246 (441)
Q Consensus       178 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~------~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~---~p~--  246 (441)
                      ...+...+..+...|++++|.+.+.......+...      ..+..+...+...|++++|...|++..+...   .+.  
T Consensus        75 ~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~  154 (293)
T 2qfc_A           75 KKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQN  154 (293)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHH
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHH
Confidence            34556678888999999999999987633212221      2234455667888999999999998875321   122  


Q ss_pred             HhhHHHHHHHHHhcCCHHHHHHHHHHHHH---c-CCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC----CCCCC
Q 036107          247 GVSYTCFIEHYCREKDFRKVDYTLKEMQE---K-GCKP--SVITCTIVMHALEKAKQIYEALKVYEKMKSD----DCLTD  316 (441)
Q Consensus       247 ~~~~~~li~~~~~~g~~~~a~~l~~~m~~---~-g~~p--~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~----g~~~~  316 (441)
                      ..+|+.+-..|...|++++|...|++..+   . +..+  ...+|..+...|.+.|++++|...+++..+.    +....
T Consensus       155 ~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~  234 (293)
T 2qfc_A          155 LYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMAL  234 (293)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSS
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHH
Confidence            45888999999999999999999999863   2 2111  1258889999999999999999999987652    21111


Q ss_pred             HHHHHHHHHHHHhcCccchHHHHHHHHHhcCChhHH-HHHHHHHH
Q 036107          317 TSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNA-LKLRQKIE  360 (441)
Q Consensus       317 ~~~~~~li~~~~~~g~~~~~~~li~~~~~~g~~~~a-~~~~~~m~  360 (441)
                      ..               .+|..+-..|.+.|+.++| ...+++..
T Consensus       235 ~~---------------~~~~~lg~~y~~~g~~~~Ai~~~~~~Al  264 (293)
T 2qfc_A          235 IG---------------QLYYQRGECLRKLEYEEAEIEDAYKKAS  264 (293)
T ss_dssp             HH---------------HHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred             HH---------------HHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence            11               2377788888999999999 67676654

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=98.21  E-value=0.0007  Score=60.86  Aligned_cols=223  Identities=9%  Similarity=-0.070  Sum_probs=161.0

Q ss_pred             HhcCCHHHHHHHHHHhhhCCCCcHHHHHHHHHHHHhcC--CHHHHHHHHHHHhhCCCCCCHhhHHHHHHHH----Hhc--
Q 036107          189 VKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTR--KSDYAQKAMKEMFQHGFSPDGVSYTCFIEHY----CRE--  260 (441)
Q Consensus       189 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~--~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~----~~~--  260 (441)
                      .+....++|+++++.+-.-.+-+...|+.--..+...|  ++++++++++.+..... -+..+|+.--..+    ...  
T Consensus        44 ~~~e~s~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nP-k~y~aW~~R~~iL~~~~~~l~~  122 (306)
T 3dra_A           44 KAEEYSERALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNE-KNYQIWNYRQLIIGQIMELNNN  122 (306)
T ss_dssp             HTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCT-TCCHHHHHHHHHHHHHHHHTTT
T ss_pred             HcCCCCHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCc-ccHHHHHHHHHHHHHHHHhccc
Confidence            34455578999998885444556667888777777888  99999999999987532 2445666554444    444  


Q ss_pred             -CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHH--HHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCccchHH
Q 036107          261 -KDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIY--EALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYN  337 (441)
Q Consensus       261 -g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~--~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~~  337 (441)
                       +++++++++++.+.+...+ |..+|+.---.+.+.|+++  ++.+.++.+.+.... |...                |+
T Consensus       123 ~~~~~~EL~~~~~~l~~~pk-ny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~-N~sA----------------W~  184 (306)
T 3dra_A          123 DFDPYREFDILEAMLSSDPK-NHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLK-NNSA----------------WS  184 (306)
T ss_dssp             CCCTHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTT-CHHH----------------HH
T ss_pred             cCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCC-CHHH----------------HH
Confidence             7899999999999987554 8889988888888899988  999999999986532 4444                44


Q ss_pred             HHHHHHHhcCC------hhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhh-HHHHHHHHHHHHHCC--CCCCHHH
Q 036107          338 TMISSACVRSE------EGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKD-GMLVLNLMREMLSKG--IVPQEST  408 (441)
Q Consensus       338 ~li~~~~~~g~------~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~-a~~~~~~~~~m~~~~--~~p~~~~  408 (441)
                      .--..+...|.      ++++++.++++.... .-|...|+-.-..+.+.|+... +..   ...+..+.+  -..+...
T Consensus       185 ~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~-p~n~SaW~y~~~ll~~~~~~~~~~~~---~~~~~~~~~~~~~~s~~a  260 (306)
T 3dra_A          185 HRFFLLFSKKHLATDNTIDEELNYVKDKIVKC-PQNPSTWNYLLGIHERFDRSITQLEE---FSLQFVDLEKDQVTSSFA  260 (306)
T ss_dssp             HHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCCGGGGHH---HHHTTEEGGGTEESCHHH
T ss_pred             HHHHHHHhccccchhhhHHHHHHHHHHHHHhC-CCCccHHHHHHHHHHhcCCChHHHHH---HHHHHHhccCCCCCCHHH
Confidence            43333344444      788999999888653 4466677777777777777544 333   333322211  2347778


Q ss_pred             HHHHHHHHHhcCCccHHHHHHHHHHH
Q 036107          409 HKMLAEELEKKSLGNAKERIDELLTH  434 (441)
Q Consensus       409 ~~~ll~~~~~~g~~~~a~~~~~~m~~  434 (441)
                      +..+.+.+.+.|+.++|.++++.+..
T Consensus       261 l~~la~~~~~~~~~~~A~~~~~~l~~  286 (306)
T 3dra_A          261 LETLAKIYTQQKKYNESRTVYDLLKS  286 (306)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHccCCHHHHHHHHHHHHh
Confidence            99999999999999999999999875

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=98.15  E-value=5.9e-05  Score=57.77  Aligned_cols=120  Identities=10%  Similarity=-0.049  Sum_probs=97.4

Q ss_pred             CHHHHHHHHHHHHcCCChhHHHHHHHHHHHhcCCCccHHHHHHHHhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCC
Q 036107          129 TPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCI  208 (441)
Q Consensus       129 ~~~~y~~li~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~  208 (441)
                      +...|..+...+...|++++|.+.|++.....+.              +...+..+...+...|++++|.+.++......
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~--------------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~   76 (131)
T 2vyi_A           11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELNPA--------------NAVYFCNRAAAYSKLGNYAGAVQDCERAICID   76 (131)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCC--------------CHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC
Confidence            4567888888999999999999999998875422              56788888999999999999999999885544


Q ss_pred             CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCH
Q 036107          209 SLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDF  263 (441)
Q Consensus       209 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~  263 (441)
                      +.+...+..+...+.+.|++++|.+.|++..+.. +.+...+..+...+.+.|++
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~  130 (131)
T 2vyi_A           77 PAYSKAYGRMGLALSSLNKHVEAVAYYKKALELD-PDNETYKSNLKIAELKLREA  130 (131)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTTC
T ss_pred             ccCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHhcC
Confidence            5567788899999999999999999999988753 22566777777777776653

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=98.14  E-value=6.2e-05  Score=58.04  Aligned_cols=98  Identities=7%  Similarity=-0.110  Sum_probs=55.2

Q ss_pred             CHHHHHHHHHHHHcCCChhHHHHHHHHHHHhcCCCccHHHHHHHHhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCC
Q 036107          129 TPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCI  208 (441)
Q Consensus       129 ~~~~y~~li~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~  208 (441)
                      +...|..+...+.+.|++++|.+.|++..+..+.              +...+..+...+...|++++|...+++.....
T Consensus        15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~--------------~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~   80 (133)
T 2lni_A           15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPK--------------DAKLYSNRAACYTKLLEFQLALKDCEECIQLE   80 (133)
T ss_dssp             HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTT--------------CHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC--------------cHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence            3455666666666666666666666666553311              44555555555666666666666665553323


Q ss_pred             CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 036107          209 SLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQ  240 (441)
Q Consensus       209 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~  240 (441)
                      +.+...+..+...+.+.|++++|.+.|++..+
T Consensus        81 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~  112 (133)
T 2lni_A           81 PTFIKGYTRKAAALEAMKDYTKAMDVYQKALD  112 (133)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             CCchHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence            33445555555555566666666666655544

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=98.13  E-value=0.00023  Score=62.73  Aligned_cols=197  Identities=11%  Similarity=-0.032  Sum_probs=133.8

Q ss_pred             cCCChhHHHHHHHHHHHhcCCCccHHHHHHHHhhcCHHHHHHH-------HHHHHhcCCHHHHHHHHHHh-h---h--CC
Q 036107          142 KSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVL-------MDTLVKRNSVAHAYKVFLKF-K---D--CI  208 (441)
Q Consensus       142 ~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~l-------i~~~~~~g~~~~a~~~~~~~-~---~--~~  208 (441)
                      ..++...|.+.|.+..+..+.              ....|..+       ...+.+.++..+++..+..- .   .  +.
T Consensus        18 ~~~d~~~A~~~F~~a~~~dP~--------------~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a   83 (282)
T 4f3v_A           18 LPMSEARSLDLFTEITNYDES--------------ACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNA   83 (282)
T ss_dssp             TTTCHHHHHHHHHHHHHHCTT--------------CHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCC
T ss_pred             cCCCHHHHHHHHHHHHHhChh--------------hhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhh
Confidence            579999999999999997655              34455555       34444444444444444332 1   1  00


Q ss_pred             CCc---------------HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 036107          209 SLS---------------SQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEM  273 (441)
Q Consensus       209 ~~~---------------~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m  273 (441)
                      ..+               ....-.+...+...|++++|.++|+.+...+  |+......+-..+.+.+++++|+..|+..
T Consensus        84 ~~~~~g~y~~~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a  161 (282)
T 4f3v_A           84 RIAIGGLYGDITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSA  161 (282)
T ss_dssp             EEECCTTTCCCEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTG
T ss_pred             hhccCCcccccccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHh
Confidence            111               1234456677888999999999999998754  54445555666888999999999999855


Q ss_pred             HHcCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCccchHHHHHHHHHhcCChhH
Q 036107          274 QEKGCKPS--VITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGN  351 (441)
Q Consensus       274 ~~~g~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~~~li~~~~~~g~~~~  351 (441)
                      .+.. .|.  ...+..+-.++.+.|++++|+..|++.......|....              ..+...-.++.+.|+.++
T Consensus       162 ~~~~-d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~--------------da~~~~glaL~~lGr~de  226 (282)
T 4f3v_A          162 GKWP-DKFLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACAR--------------AIAWYLAMARRSQGNESA  226 (282)
T ss_dssp             GGCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHH--------------HHHHHHHHHHHHHTCHHH
T ss_pred             hccC-CcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccH--------------HHHHHHHHHHHHcCCHHH
Confidence            4432 111  23677788899999999999999999886544354211              125566677888999999


Q ss_pred             HHHHHHHHHHcCCCCCHHHH
Q 036107          352 ALKLRQKIEEDSCKPDCETH  371 (441)
Q Consensus       352 a~~~~~~m~~~g~~p~~~t~  371 (441)
                      |..+|+++...  .|+....
T Consensus       227 A~~~l~~a~a~--~P~~~~~  244 (282)
T 4f3v_A          227 AVALLEWLQTT--HPEPKVA  244 (282)
T ss_dssp             HHHHHHHHHHH--SCCHHHH
T ss_pred             HHHHHHHHHhc--CCcHHHH
Confidence            99999999875  5553333

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=98.12  E-value=0.00042  Score=69.48  Aligned_cols=230  Identities=10%  Similarity=0.022  Sum_probs=154.5

Q ss_pred             HHHHHHHHHHHcCCC-------hhHHHHHHHHHHHhcCCCccHHHHHHHHhhcCHHHHHHHHHHHHhcCCHHHHH-HHHH
Q 036107          131 ETYNAMVEALGKSKK-------FGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAY-KVFL  202 (441)
Q Consensus       131 ~~y~~li~~~~~~~~-------~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~-~~~~  202 (441)
                      ..|...|.---..+.       .+.+..+|++....-+              .....|-....-+.+.|+.++|. ++|+
T Consensus       303 ~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~p--------------~~~~lW~~ya~~~~~~~~~~~a~r~il~  368 (679)
T 4e6h_A          303 LIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHVC--------------FAPEIWFNMANYQGEKNTDSTVITKYLK  368 (679)
T ss_dssp             HHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTT--------------TCHHHHHHHHHHHHHHSCCTTHHHHHHH
T ss_pred             HHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHcC--------------CCHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence            456666654443321       2334566776665331              16677777777888889988996 9998


Q ss_pred             HhhhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCC---------CCC------------HhhHHHHHHHHHhcC
Q 036107          203 KFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGF---------SPD------------GVSYTCFIEHYCREK  261 (441)
Q Consensus       203 ~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~---------~p~------------~~~~~~li~~~~~~g  261 (441)
                      +.-..++.+...|-..+...-+.|+++.|.++|+++.....         .|+            ..+|...+....+.|
T Consensus       369 rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~  448 (679)
T 4e6h_A          369 LGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQ  448 (679)
T ss_dssp             HHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcC
Confidence            87555666777788888888899999999999999876310         132            236777788778888


Q ss_pred             CHHHHHHHHHHHHHc-C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCccchHHHH
Q 036107          262 DFRKVDYTLKEMQEK-G-CKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTM  339 (441)
Q Consensus       262 ~~~~a~~l~~~m~~~-g-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~~~l  339 (441)
                      +.+.|.++|....+. + ..+......+.+.-.. .++++.|.++|+...+. ++-+...                |...
T Consensus       449 ~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~-~~d~e~Ar~ife~~Lk~-~p~~~~~----------------w~~y  510 (679)
T 4e6h_A          449 GLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHI-SKDTKTACKVLELGLKY-FATDGEY----------------INKY  510 (679)
T ss_dssp             CHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTT-TSCCHHHHHHHHHHHHH-HTTCHHH----------------HHHH
T ss_pred             CHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHh-CCCHHHHHHHHHHHHHH-CCCchHH----------------HHHH
Confidence            899999999998775 2 2233333333333221 34588999999988775 2223322                6666


Q ss_pred             HHHHHhcCChhHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHhcCChhhHHHHHH
Q 036107          340 ISSACVRSEEGNALKLRQKIEEDSCKP--DCETHARSLKMCCHKKRMKDGMLVLN  392 (441)
Q Consensus       340 i~~~~~~g~~~~a~~~~~~m~~~g~~p--~~~t~~~li~~~~~~g~~~~a~~~~~  392 (441)
                      +......|+.+.|-.+|++.......+  ....|...+.-=.+.|+.+.+.++.+
T Consensus       511 ~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~  565 (679)
T 4e6h_A          511 LDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEK  565 (679)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHH
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            666677788899999999887653222  23467777777778888888877544

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=98.11  E-value=6.6e-05  Score=60.03  Aligned_cols=97  Identities=4%  Similarity=-0.144  Sum_probs=62.1

Q ss_pred             HHHHHHHHHHHHcCCChhHHHHHHHHHHHhcCCCccHHHHHHHHhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCC
Q 036107          130 PETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCIS  209 (441)
Q Consensus       130 ~~~y~~li~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~  209 (441)
                      ...|..+-..+.+.|++++|.+.|++.....|.              +...|..+-.++...|++++|++.|++.-.-.+
T Consensus        36 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~--------------~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P  101 (151)
T 3gyz_A           36 MDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFY--------------NVDYIMGLAAIYQIKEQFQQAADLYAVAFALGK  101 (151)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSS
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--------------CHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCC
Confidence            345556666666777777777777776665422              556666666677777777777777766643334


Q ss_pred             CcHHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 036107          210 LSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQ  240 (441)
Q Consensus       210 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~  240 (441)
                      .+...|..+-.+|.+.|++++|.+.|++..+
T Consensus       102 ~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~  132 (151)
T 3gyz_A          102 NDYTPVFHTGQCQLRLKAPLKAKECFELVIQ  132 (151)
T ss_dssp             SCCHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            4555666666667777777777777766665

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=98.11  E-value=5.6e-05  Score=58.27  Aligned_cols=97  Identities=12%  Similarity=0.039  Sum_probs=46.1

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHH
Q 036107          178 TRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHY  257 (441)
Q Consensus       178 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~  257 (441)
                      ...+..+...+.+.|++++|.+.|++.-...+.+...+..+...+...|++++|.+.|++..+.. +.+...+..+...+
T Consensus        16 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~   94 (133)
T 2lni_A           16 ALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRKAAAL   94 (133)
T ss_dssp             HHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHHHHHH
Confidence            34444445555555555555555555433223344444555555555555555555555544421 11334444444455


Q ss_pred             HhcCCHHHHHHHHHHHHH
Q 036107          258 CREKDFRKVDYTLKEMQE  275 (441)
Q Consensus       258 ~~~g~~~~a~~l~~~m~~  275 (441)
                      .+.|++++|.+.|++..+
T Consensus        95 ~~~~~~~~A~~~~~~~~~  112 (133)
T 2lni_A           95 EAMKDYTKAMDVYQKALD  112 (133)
T ss_dssp             HHTTCHHHHHHHHHHHHH
T ss_pred             HHHhhHHHHHHHHHHHHH
Confidence            555555555555554443

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=98.09  E-value=2.9e-05  Score=63.78  Aligned_cols=121  Identities=3%  Similarity=0.061  Sum_probs=80.4

Q ss_pred             HcCCChhHHHHHHHHHHHhcCCCccHHHHHHHHhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcHHHHHHHHH
Q 036107          141 GKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIH  220 (441)
Q Consensus       141 ~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~  220 (441)
                      ...|++++|.+.+++.....+.              +...+..+...+...|++++|...|++.....+.+...+..+..
T Consensus        21 ~~~~~~~~A~~~~~~al~~~p~--------------~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~   86 (177)
T 2e2e_A           21 ASQQNPEAQLQALQDKIRANPQ--------------NSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALAT   86 (177)
T ss_dssp             C-----CCCCHHHHHHHHHCCS--------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHH
T ss_pred             hhccCHHHHHHHHHHHHHhCCC--------------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence            3457777788777777664422              56677777778888888888888887764333445666666666


Q ss_pred             H-HHhcCCH--HHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 036107          221 G-WCKTRKS--DYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEK  276 (441)
Q Consensus       221 ~-~~~~~~~--~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~  276 (441)
                      . +...|++  ++|...|++..+.. +.+...+..+...+...|++++|...|++..+.
T Consensus        87 ~l~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  144 (177)
T 2e2e_A           87 VLYYQASQHMTAQTRAMIDKALALD-SNEITALMLLASDAFMQANYAQAIELWQKVMDL  144 (177)
T ss_dssp             HHHHHTTTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred             HHHHhcCCcchHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence            6 6677777  88888887777642 123566667777777778888888877777664

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=98.08  E-value=0.00012  Score=56.51  Aligned_cols=95  Identities=13%  Similarity=-0.079  Sum_probs=54.7

Q ss_pred             HHHHHHHHHHcCCChhHHHHHHHHHHHhcCCCccHHHHHHHHhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCc
Q 036107          132 TYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLS  211 (441)
Q Consensus       132 ~y~~li~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~  211 (441)
                      .|...-..+.+.|++++|++.|++..+..+.              +...|..+-.++.+.|++++|++.|++.-.-.+.+
T Consensus        15 ~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~--------------~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~   80 (126)
T 4gco_A           15 EEKNKGNEYFKKGDYPTAMRHYNEAVKRDPE--------------NAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKF   80 (126)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--------------CHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhh
Confidence            4555555666666666666666665554321              45556666666666666666666665553323344


Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 036107          212 SQIFDVLIHGWCKTRKSDYAQKAMKEMFQ  240 (441)
Q Consensus       212 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~  240 (441)
                      ...|..+-.+|...|++++|.+.|++..+
T Consensus        81 ~~a~~~lg~~~~~~~~~~~A~~~~~~al~  109 (126)
T 4gco_A           81 IKGYIRKAACLVAMREWSKAQRAYEDALQ  109 (126)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            55555556666666666666666665554

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=98.07  E-value=0.0027  Score=57.83  Aligned_cols=244  Identities=10%  Similarity=-0.028  Sum_probs=155.9

Q ss_pred             HHHHHHHHHHcCCChhHHHHHHHHHHHhcCCCccHHHHHHHHhhcCHHHHHHHHHHHHhcC-CHHHHHHHHHHhhhCCCC
Q 036107          132 TYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRN-SVAHAYKVFLKFKDCISL  210 (441)
Q Consensus       132 ~y~~li~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~a~~~~~~~~~~~~~  210 (441)
                      .++.+-....+.+..++|+++++++....+.              +..+|+.--..+...| .+++++++++.+-...+-
T Consensus        56 ~~~~~r~~~~~~e~se~AL~lt~~~L~~nP~--------------~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPK  121 (349)
T 3q7a_A           56 AMDYFRAIAAKEEKSERALELTEIIVRMNPA--------------HYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLK  121 (349)
T ss_dssp             HHHHHHHHHHTTCCSHHHHHHHHHHHHHCTT--------------CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCC
T ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHhCch--------------hHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCC
Confidence            3444444455556677899999999986643              5566777666777778 599999999998666677


Q ss_pred             cHHHHHHHHHHHHhc-C-CHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHH--------HHHHHHHHHHHcCCCC
Q 036107          211 SSQIFDVLIHGWCKT-R-KSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFR--------KVDYTLKEMQEKGCKP  280 (441)
Q Consensus       211 ~~~~~~~li~~~~~~-~-~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~--------~a~~l~~~m~~~g~~p  280 (441)
                      +..+|+.--..+.+. + ++++++++++.+.+.. +.|...|+-..-...+.|.++        ++++.++++.+.... 
T Consensus       122 ny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~-  199 (349)
T 3q7a_A          122 SYQVWHHRLLLLDRISPQDPVSEIEYIHGSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGR-  199 (349)
T ss_dssp             CHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTT-
T ss_pred             cHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCC-
Confidence            888888877777666 6 8899999999999754 346777776666665555555        899999999887654 


Q ss_pred             CHHHHHHHHHHHHhcCC-------HHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCccchHHHHHHHHH-hcC-----
Q 036107          281 SVITCTIVMHALEKAKQ-------IYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSAC-VRS-----  347 (441)
Q Consensus       281 ~~~~~~~ll~~~~~~~~-------~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~~~li~~~~-~~g-----  347 (441)
                      |...|+..-..+.+.++       ++++.+.++++.... +-|...|+-+-..+.+.|+.  .+.++.+.- ..|     
T Consensus       200 N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~-P~n~SaW~Ylr~Ll~~~~~~--~~~~~~~~~~~~~~~~~~  276 (349)
T 3q7a_A          200 NNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLI-PHNVSAWNYLRGFLKHFSLP--LVPILPAILPYTASKLNP  276 (349)
T ss_dssp             CHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCC--SGGGHHHHGGGTC-----
T ss_pred             CHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCC--cccccccccccccccccc
Confidence            88899988888888776       688888888887753 33555544333333333321  000000000 000     


Q ss_pred             ChhHHHHHHHHHHHcC-----CCCCHHHHHHHHHHHHhcCChhhHHHHHHHH
Q 036107          348 EEGNALKLRQKIEEDS-----CKPDCETHARSLKMCCHKKRMKDGMLVLNLM  394 (441)
Q Consensus       348 ~~~~a~~~~~~m~~~g-----~~p~~~t~~~li~~~~~~g~~~~a~~~~~~~  394 (441)
                      ......+...++...+     -.++......+.+.|...|+.++|.++++.+
T Consensus       277 ~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l  328 (349)
T 3q7a_A          277 DIETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKL  328 (349)
T ss_dssp             ---------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             cchhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence            0111222222222111     1356667777777888878777776655444

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=98.06  E-value=5.7e-05  Score=61.98  Aligned_cols=122  Identities=7%  Similarity=0.075  Sum_probs=97.9

Q ss_pred             HhcCCHHHHHHHHHHhhhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHH-HHhcCCH--HH
Q 036107          189 VKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEH-YCREKDF--RK  265 (441)
Q Consensus       189 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~-~~~~g~~--~~  265 (441)
                      ...|++++|...++..-...+.+...|..+...|...|++++|...|++..+.. +.+...+..+... +...|++  ++
T Consensus        21 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~~~   99 (177)
T 2e2e_A           21 ASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMTAQ   99 (177)
T ss_dssp             C-----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCCHH
T ss_pred             hhccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcchHH
Confidence            356889999999988755445677889999999999999999999999988742 2356677777777 7789998  99


Q ss_pred             HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCC
Q 036107          266 VDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDD  312 (441)
Q Consensus       266 a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g  312 (441)
                      |...|++..+... -+...+..+...+...|++++|...|+...+..
T Consensus       100 A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  145 (177)
T 2e2e_A          100 TRAMIDKALALDS-NEITALMLLASDAFMQANYAQAIELWQKVMDLN  145 (177)
T ss_dssp             HHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHhCC-CcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC
Confidence            9999999988643 357888889999999999999999999998854

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=98.01  E-value=9.2e-05  Score=59.18  Aligned_cols=94  Identities=7%  Similarity=-0.043  Sum_probs=44.4

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 036107          215 FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEK  294 (441)
Q Consensus       215 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~  294 (441)
                      +..+-..+.+.|++++|...|++..... +-+...|..+-.++...|++++|...|++..+... -+...|..+-.+|.+
T Consensus        39 ~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P-~~~~~~~~lg~~~~~  116 (151)
T 3gyz_A           39 IYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGK-NDYTPVFHTGQCQLR  116 (151)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSS-SCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCC-CCcHHHHHHHHHHHH
Confidence            4444444445555555555555544421 11334444444555555555555555555444321 133444445555555


Q ss_pred             cCCHHHHHHHHHHHhh
Q 036107          295 AKQIYEALKVYEKMKS  310 (441)
Q Consensus       295 ~~~~~~a~~~~~~m~~  310 (441)
                      .|++++|...|+...+
T Consensus       117 lg~~~eA~~~~~~al~  132 (151)
T 3gyz_A          117 LKAPLKAKECFELVIQ  132 (151)
T ss_dssp             TTCHHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHH
Confidence            5555555555555544

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=98.00  E-value=0.00011  Score=65.62  Aligned_cols=162  Identities=7%  Similarity=-0.080  Sum_probs=74.4

Q ss_pred             HHHHHHHHHHHcCCChhHHHHHHHHHHHhcCCCccHHHHHHHHhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCC
Q 036107          131 ETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISL  210 (441)
Q Consensus       131 ~~y~~li~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~  210 (441)
                      ..+..+-..+.+.|++++|.+.|++.....+.              +...+..+-..+.+.|++++|...++......+.
T Consensus         5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~--------------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~   70 (281)
T 2c2l_A            5 QELKEQGNRLFVGRKYPEAAACYGRAITRNPL--------------VAVYYTNRALCYLKMQQPEQALADCRRALELDGQ   70 (281)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC--------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTT
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc--------------cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC
Confidence            34444444445555555555555554443211              3444444445555555555555555444332233


Q ss_pred             cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC------------------------------CCCCCHhhHHHHHHHHHhc
Q 036107          211 SSQIFDVLIHGWCKTRKSDYAQKAMKEMFQH------------------------------GFSPDGVSYTCFIEHYCRE  260 (441)
Q Consensus       211 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~------------------------------g~~p~~~~~~~li~~~~~~  260 (441)
                      +...+..+-.+|...|++++|.+.|++..+.                              -...+... ...+..+ ..
T Consensus        71 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i-~~~l~~l-~~  148 (281)
T 2c2l_A           71 SVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKKRWNSIEERRIHQESEL-HSYLTRL-IA  148 (281)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHHHHHHHHHHHHHHHTCCCCCCHH-HHHHHHH-HH
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH-HHHHHHH-HH
Confidence            4444444445555555555555555444321                              11122222 1222222 24


Q ss_pred             CCHHHHHHHHHHHHHcCCCCCHHH-HHHHHHHHHhc-CCHHHHHHHHHHHhh
Q 036107          261 KDFRKVDYTLKEMQEKGCKPSVIT-CTIVMHALEKA-KQIYEALKVYEKMKS  310 (441)
Q Consensus       261 g~~~~a~~l~~~m~~~g~~p~~~~-~~~ll~~~~~~-~~~~~a~~~~~~m~~  310 (441)
                      |++++|.+.++...+.  .|+... ...+-..+.+. +.++++.++|....+
T Consensus       149 ~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~  198 (281)
T 2c2l_A          149 AERERELEECQRNHEG--HEDDGHIRAQQACIEAKHDKYMADMDELFSQVDE  198 (281)
T ss_dssp             HHHHHHHTTTSGGGTT--TSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred             HHHHHHHHHHHhhhcc--ccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence            5666666666555443  344332 23333333333 557777888877655

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=98.00  E-value=0.00024  Score=54.71  Aligned_cols=94  Identities=7%  Similarity=-0.021  Sum_probs=44.8

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhc
Q 036107          181 MSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCRE  260 (441)
Q Consensus       181 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~  260 (441)
                      +...-..+.+.|++++|++.|++.-...+.+...|..+-.+|.+.|++++|+..|++..+.. +.+...|..+-.++...
T Consensus        16 ~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~   94 (126)
T 4gco_A           16 EKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYIRKAACLVAM   94 (126)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHHHHHHHHHHC
Confidence            33344445555555555555554432223344445555555555555555555555544421 11234444455555555


Q ss_pred             CCHHHHHHHHHHHHH
Q 036107          261 KDFRKVDYTLKEMQE  275 (441)
Q Consensus       261 g~~~~a~~l~~~m~~  275 (441)
                      |++++|.+.|++..+
T Consensus        95 ~~~~~A~~~~~~al~  109 (126)
T 4gco_A           95 REWSKAQRAYEDALQ  109 (126)
T ss_dssp             TCHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHH
Confidence            555555555555444

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=97.98  E-value=0.0002  Score=65.68  Aligned_cols=131  Identities=11%  Similarity=0.013  Sum_probs=107.5

Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCc---------------HHHHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 036107          177 DTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLS---------------SQIFDVLIHGWCKTRKSDYAQKAMKEMFQH  241 (441)
Q Consensus       177 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~---------------~~~~~~li~~~~~~~~~~~a~~~~~~m~~~  241 (441)
                      +...+..+-..+.+.|++++|...|++.-...+.+               ...|..+-.+|.+.|++++|...|++..+.
T Consensus       146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~  225 (336)
T 1p5q_A          146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALEL  225 (336)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            46778888899999999999999998874322233               578999999999999999999999999875


Q ss_pred             CCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHH-HHHHHHHh
Q 036107          242 GFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEA-LKVYEKMK  309 (441)
Q Consensus       242 g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a-~~~~~~m~  309 (441)
                      . +.+...|..+-.++...|++++|...|++..+... -+...+..+..++.+.|+.+++ ...|..|.
T Consensus       226 ~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P-~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~  292 (336)
T 1p5q_A          226 D-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYP-NNKAAKTQLAVCQQRIRRQLAREKKLYANMF  292 (336)
T ss_dssp             C-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             C-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3 23678899999999999999999999999987643 3677888899999999999988 44666654

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=97.95  E-value=0.0001  Score=56.48  Aligned_cols=98  Identities=11%  Similarity=0.101  Sum_probs=55.4

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCC--CCC----HhhHHH
Q 036107          179 RAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGF--SPD----GVSYTC  252 (441)
Q Consensus       179 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~--~p~----~~~~~~  252 (441)
                      ..+..+...+...|++++|...|+......+.+...+..+...+...|++++|...|++......  .++    ..+|..
T Consensus         5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (131)
T 1elr_A            5 LKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR   84 (131)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHH
Confidence            34555555666666666666666665333344555566666666666666666666666554311  111    445555


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHc
Q 036107          253 FIEHYCREKDFRKVDYTLKEMQEK  276 (441)
Q Consensus       253 li~~~~~~g~~~~a~~l~~~m~~~  276 (441)
                      +...+...|++++|.+.|++..+.
T Consensus        85 la~~~~~~~~~~~A~~~~~~~~~~  108 (131)
T 1elr_A           85 IGNSYFKEEKYKDAIHFYNKSLAE  108 (131)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhccHHHHHHHHHHHHHh
Confidence            555566666666666666665553

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=97.95  E-value=0.00043  Score=51.68  Aligned_cols=96  Identities=10%  Similarity=-0.046  Sum_probs=48.1

Q ss_pred             HHHHHHHHHHHcCCChhHHHHHHHHHHHhcCCCccHHHHHHHHhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCC
Q 036107          131 ETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISL  210 (441)
Q Consensus       131 ~~y~~li~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~  210 (441)
                      ..|..+...+...|++++|.+.|++.....+.              +...+..+...+.+.|++++|...++..-...+.
T Consensus         5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~--------------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~   70 (118)
T 1elw_A            5 NELKEKGNKALSVGNIDDALQCYSEAIKLDPH--------------NHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPD   70 (118)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--------------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC--------------cHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcc
Confidence            34445555555555555555555555543311              3444455555555555555555555554322233


Q ss_pred             cHHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 036107          211 SSQIFDVLIHGWCKTRKSDYAQKAMKEMFQ  240 (441)
Q Consensus       211 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~  240 (441)
                      +...+..+..++.+.|++++|.+.|++..+
T Consensus        71 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~  100 (118)
T 1elw_A           71 WGKGYSRKAAALEFLNRFEEAKRTYEEGLK  100 (118)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred             cHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence            344455555555555555555555555444

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=97.92  E-value=0.00013  Score=55.86  Aligned_cols=110  Identities=8%  Similarity=0.011  Sum_probs=87.9

Q ss_pred             HHHHHHHHHHHHcCCChhHHHHHHHHHHHhcCCCccHHHHHHHHhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhh---
Q 036107          130 PETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKD---  206 (441)
Q Consensus       130 ~~~y~~li~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~---  206 (441)
                      ...|..+...+...|++++|...|++.....+.              +...+..+...+...|++++|...++....   
T Consensus         4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~--------------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~   69 (131)
T 1elr_A            4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPT--------------NMTYITNQAAVYFEKGDYNKCRELCEKAIEVGR   69 (131)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--------------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCc--------------cHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcc
Confidence            457888888999999999999999998886522              667888899999999999999999988733   


Q ss_pred             CCCCc----HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHH
Q 036107          207 CISLS----SQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIE  255 (441)
Q Consensus       207 ~~~~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~  255 (441)
                      ...++    ..++..+...+.+.|++++|.+.|++..+.  .|+......+-.
T Consensus        70 ~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~  120 (131)
T 1elr_A           70 ENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAE--HRTPDVLKKCQQ  120 (131)
T ss_dssp             HSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHH
T ss_pred             ccchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCHHHHHHHHH
Confidence            12222    677888899999999999999999999874  456555544443

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=97.92  E-value=3.1e-05  Score=65.00  Aligned_cols=125  Identities=13%  Similarity=-0.067  Sum_probs=84.4

Q ss_pred             HHHHhcCCHHHHHHHHHHhhhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC-CC--------------HhhH
Q 036107          186 DTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFS-PD--------------GVSY  250 (441)
Q Consensus       186 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~-p~--------------~~~~  250 (441)
                      ......|+++.+.+.++.-..........+..+-..+.+.|++++|.+.|++..+..-. |+              ...|
T Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~   91 (198)
T 2fbn_A           12 SGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCN   91 (198)
T ss_dssp             ----------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHH
T ss_pred             hhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHH
Confidence            34445577777776665432222224445667777888889999999998888763211 10              2677


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 036107          251 TCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSD  311 (441)
Q Consensus       251 ~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~  311 (441)
                      ..+-.++.+.|++++|...+++..+.. +.+...+..+..+|...|++++|.+.|+...+.
T Consensus        92 ~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~  151 (198)
T 2fbn_A           92 LNLATCYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASL  151 (198)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence            888888889999999999999887763 236778888888899999999999999888765

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=97.92  E-value=7.3e-05  Score=59.56  Aligned_cols=99  Identities=6%  Similarity=-0.133  Sum_probs=73.5

Q ss_pred             cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 036107          211 SSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMH  290 (441)
Q Consensus       211 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~  290 (441)
                      +...+..+-..+.+.|++++|...|++..... +.+...|..+-.++...|++++|...|++..+... -+...+..+-.
T Consensus        20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p-~~~~~~~~lg~   97 (148)
T 2vgx_A           20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDI-XEPRFPFHAAE   97 (148)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCTHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCchHHHHHHH
Confidence            44556667777888888888888888877642 23566777777788888888888888888776532 25667777888


Q ss_pred             HHHhcCCHHHHHHHHHHHhhC
Q 036107          291 ALEKAKQIYEALKVYEKMKSD  311 (441)
Q Consensus       291 ~~~~~~~~~~a~~~~~~m~~~  311 (441)
                      +|...|++++|...|+...+.
T Consensus        98 ~~~~~g~~~~A~~~~~~al~~  118 (148)
T 2vgx_A           98 CLLQXGELAEAESGLFLAQEL  118 (148)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHH
Confidence            888888888888888877663

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=97.91  E-value=0.00055  Score=51.05  Aligned_cols=94  Identities=16%  Similarity=0.044  Sum_probs=43.6

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 036107          215 FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEK  294 (441)
Q Consensus       215 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~  294 (441)
                      +..+...+...|++++|.+.|++..... +.+...+..+...+...|++++|...+++..+... .+...+..+..++..
T Consensus         7 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~   84 (118)
T 1elw_A            7 LKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKP-DWGKGYSRKAAALEF   84 (118)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHH
Confidence            3444444444455555555554444321 11334444444445555555555555555444321 134444445555555


Q ss_pred             cCCHHHHHHHHHHHhh
Q 036107          295 AKQIYEALKVYEKMKS  310 (441)
Q Consensus       295 ~~~~~~a~~~~~~m~~  310 (441)
                      .|++++|.+.++...+
T Consensus        85 ~~~~~~A~~~~~~~~~  100 (118)
T 1elw_A           85 LNRFEEAKRTYEEGLK  100 (118)
T ss_dssp             TTCHHHHHHHHHHHHT
T ss_pred             HhhHHHHHHHHHHHHH
Confidence            5555555555555444

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=97.91  E-value=0.00038  Score=53.26  Aligned_cols=93  Identities=9%  Similarity=-0.010  Sum_probs=42.7

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHhhhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcC
Q 036107          182 SVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREK  261 (441)
Q Consensus       182 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g  261 (441)
                      ..+-..+.+.|++++|...|++.-...+.+...|..+-.+|.+.|++++|...|++..+.. +.+...|..+-.++...|
T Consensus         8 ~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~   86 (126)
T 3upv_A            8 RLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAVK   86 (126)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHh
Confidence            3333444444555555555444422223334444445555555555555555555544421 112344444555555555


Q ss_pred             CHHHHHHHHHHHHH
Q 036107          262 DFRKVDYTLKEMQE  275 (441)
Q Consensus       262 ~~~~a~~l~~~m~~  275 (441)
                      ++++|...|++..+
T Consensus        87 ~~~~A~~~~~~al~  100 (126)
T 3upv_A           87 EYASALETLDAART  100 (126)
T ss_dssp             CHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHH
Confidence            55555555555443

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=97.91  E-value=0.00014  Score=53.96  Aligned_cols=95  Identities=9%  Similarity=-0.010  Sum_probs=46.7

Q ss_pred             HHHHHHHHHHcCCChhHHHHHHHHHHHhcCCCccHHHHHHHHhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCC-
Q 036107          132 TYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISL-  210 (441)
Q Consensus       132 ~y~~li~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~-  210 (441)
                      .|..+...+.+.|++++|...|++..+..+.              +...+..+...+...|++++|.+.|++.....+. 
T Consensus         8 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~--------------~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~   73 (112)
T 2kck_A            8 EYYLEGVLQYDAGNYTESIDLFEKAIQLDPE--------------ESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDE   73 (112)
T ss_dssp             GGGGHHHHHHSSCCHHHHHHHHHHHHHHCCC--------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCT
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHHHhCcC--------------CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCccc
Confidence            3444444555555555555555555543311              3344444555555555555555555544332222 


Q ss_pred             -cHHHHHHHHHHHHhc-CCHHHHHHHHHHHhh
Q 036107          211 -SSQIFDVLIHGWCKT-RKSDYAQKAMKEMFQ  240 (441)
Q Consensus       211 -~~~~~~~li~~~~~~-~~~~~a~~~~~~m~~  240 (441)
                       +...+..+...+.+. |++++|.+.|++...
T Consensus        74 ~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~  105 (112)
T 2kck_A           74 YNKDVWAAKADALRYIEGKEVEAEIAEARAKL  105 (112)
T ss_dssp             TCHHHHHHHHHHHTTCSSCSHHHHHHHHHHGG
T ss_pred             chHHHHHHHHHHHHHHhCCHHHHHHHHHHHhh
Confidence             344455555555555 555555555555544

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=97.91  E-value=0.00023  Score=65.28  Aligned_cols=145  Identities=11%  Similarity=-0.062  Sum_probs=110.9

Q ss_pred             CHHHHHHHHHHHHcCCChhHHHHHHHHHHHhcCCCccHH-HHHHHHhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhC
Q 036107          129 TPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLA-AMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDC  207 (441)
Q Consensus       129 ~~~~y~~li~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~-~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~  207 (441)
                      +...|..+-..+.+.|++++|.+.|++.....+...... ............+|..+-.++.+.|++++|+..|++.-..
T Consensus       146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~  225 (336)
T 1p5q_A          146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALEL  225 (336)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            356788888999999999999999999888653321000 0000000001578899999999999999999999998554


Q ss_pred             CCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHH-HHHHHHHH
Q 036107          208 ISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKV-DYTLKEMQ  274 (441)
Q Consensus       208 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a-~~l~~~m~  274 (441)
                      .+.+...|..+-.+|...|++++|...|++..+.. +-+...+..+...+.+.|+.++| ..+++.|.
T Consensus       226 ~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~  292 (336)
T 1p5q_A          226 DSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY-PNNKAAKTQLAVCQQRIRRQLAREKKLYANMF  292 (336)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            56678889999999999999999999999998742 22567888888899999999888 45666664

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.91  E-value=0.00045  Score=65.46  Aligned_cols=211  Identities=9%  Similarity=-0.040  Sum_probs=137.3

Q ss_pred             HHHHcCCChhHHHHHHHHHHHhcCCCccHHHHH---HHHhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhh---CCCCc
Q 036107          138 EALGKSKKFGLMWELVKEIDELSNGYVSLAAMS---TVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKD---CISLS  211 (441)
Q Consensus       138 ~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~---~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~---~~~~~  211 (441)
                      ..+.+.|++++|.+.|.+..+..+.........   .........++..+...|.+.|++++|.+.+.....   .+...
T Consensus        12 ~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~   91 (434)
T 4b4t_Q           12 RRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKS   91 (434)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccch
Confidence            345678999999999999887542221100000   000000123577889999999999999999988732   22211


Q ss_pred             --H-HHHHHHHHHHHhcCCHHHHHHHHHHHhh----CCCCCC-HhhHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCC
Q 036107          212 --S-QIFDVLIHGWCKTRKSDYAQKAMKEMFQ----HGFSPD-GVSYTCFIEHYCREKDFRKVDYTLKEMQEK----GCK  279 (441)
Q Consensus       212 --~-~~~~~li~~~~~~~~~~~a~~~~~~m~~----~g~~p~-~~~~~~li~~~~~~g~~~~a~~l~~~m~~~----g~~  279 (441)
                        . .+.+.+-..+...|+.+.|.+++.+...    .+..+. ..++..+...+...|++++|..++++....    +-+
T Consensus        92 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~  171 (434)
T 4b4t_Q           92 KTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDK  171 (434)
T ss_dssp             HHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCS
T ss_pred             HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccc
Confidence              1 1223333344456889999999887753    222222 457888999999999999999999987653    112


Q ss_pred             C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC--CCCCCHHHHHHHHHHHHhcCccchHHHHHHHHHhcCChhHHHHHH
Q 036107          280 P-SVITCTIVMHALEKAKQIYEALKVYEKMKSD--DCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLR  356 (441)
Q Consensus       280 p-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~--g~~~~~~~~~~li~~~~~~g~~~~~~~li~~~~~~g~~~~a~~~~  356 (441)
                      + ...+|..++..|...|++++|..+++.....  .+..+.....            ..+..+...+...|++++|...|
T Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~------------~~~~~~g~~~~~~~~y~~A~~~~  239 (434)
T 4b4t_Q          172 PSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVA------------ELDLMSGILHCEDKDYKTAFSYF  239 (434)
T ss_dssp             THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHH------------HHHHHHHHHTTSSSCHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHH------------HHHHHHHHHHHHHHhHHHHHHHH
Confidence            2 2567888999999999999999999887642  1111111100            22566666677778888887777


Q ss_pred             HHHH
Q 036107          357 QKIE  360 (441)
Q Consensus       357 ~~m~  360 (441)
                      .+..
T Consensus       240 ~~a~  243 (434)
T 4b4t_Q          240 FESF  243 (434)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            6654

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=97.91  E-value=0.00024  Score=56.53  Aligned_cols=97  Identities=8%  Similarity=-0.132  Sum_probs=66.4

Q ss_pred             HHHHHHHHHHHHcCCChhHHHHHHHHHHHhcCCCccHHHHHHHHhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCC
Q 036107          130 PETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCIS  209 (441)
Q Consensus       130 ~~~y~~li~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~  209 (441)
                      ...+..+-..+.+.|++++|.+.|++.....+.              +...|..+-.++...|++++|++.|++.-...+
T Consensus        21 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~--------------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p   86 (148)
T 2vgx_A           21 LEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHY--------------DSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDI   86 (148)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcc--------------cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence            445666666777777777777777777664422              566667777777777777777777777644334


Q ss_pred             CcHHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 036107          210 LSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQ  240 (441)
Q Consensus       210 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~  240 (441)
                      .+...+..+-.+|...|++++|.+.|++..+
T Consensus        87 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~  117 (148)
T 2vgx_A           87 XEPRFPFHAAECLLQXGELAEAESGLFLAQE  117 (148)
T ss_dssp             TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             CCchHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            4556667777777777777777777777665

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=97.87  E-value=0.00025  Score=55.78  Aligned_cols=96  Identities=10%  Similarity=-0.113  Sum_probs=69.8

Q ss_pred             HHHHHHHHHHHcCCChhHHHHHHHHHHHhcCCCccHHHHHHHHhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCC
Q 036107          131 ETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISL  210 (441)
Q Consensus       131 ~~y~~li~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~  210 (441)
                      ..+..+-..+.+.|++++|.+.|++.....+.              +...|..+-.++.+.|++++|...|+..-...+.
T Consensus        19 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~--------------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~   84 (142)
T 2xcb_A           19 EQLYALGFNQYQAGKWDDAQKIFQALCMLDHY--------------DARYFLGLGACRQSLGLYEQALQSYSYGALMDIN   84 (142)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHHHHccHHHHHHHHHHHHHhCCc--------------cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC
Confidence            45555666777788888888888887775422              5667777777788888888888888776443345


Q ss_pred             cHHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 036107          211 SSQIFDVLIHGWCKTRKSDYAQKAMKEMFQ  240 (441)
Q Consensus       211 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~  240 (441)
                      +...+..+-.+|...|++++|.+.|+...+
T Consensus        85 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~  114 (142)
T 2xcb_A           85 EPRFPFHAAECHLQLGDLDGAESGFYSARA  114 (142)
T ss_dssp             CTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            566677777788888888888888877765

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=97.87  E-value=0.0047  Score=56.23  Aligned_cols=225  Identities=11%  Similarity=-0.049  Sum_probs=152.9

Q ss_pred             HHhcCCHHHHHHHHHHhhhCCCCcHHHHHHHHHHHHhcC-CHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhc-C-CHH
Q 036107          188 LVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTR-KSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCRE-K-DFR  264 (441)
Q Consensus       188 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~-~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~-g-~~~  264 (441)
                      ..+.+..++|+++++.+-.-.+-+..+|+.--..+...| .+++++++++.+..... -+..+|+.--..+.+. + +++
T Consensus        64 ~~~~e~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nP-Kny~aW~hR~wlL~~l~~~~~~  142 (349)
T 3q7a_A           64 AAKEEKSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNL-KSYQVWHHRLLLLDRISPQDPV  142 (349)
T ss_dssp             HHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHHHCCSCCH
T ss_pred             HHhCCCCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHhcCCChH
Confidence            334456678999999885544566777887777777777 59999999999997643 3667888777777776 6 889


Q ss_pred             HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHH--------HHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCccchH
Q 036107          265 KVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIY--------EALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIY  336 (441)
Q Consensus       265 ~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~--------~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~  336 (441)
                      +++++++.+.+...+ |...|+.-.-.+.+.|.++        ++.+.++++.+... -|...                |
T Consensus       143 ~EL~~~~k~L~~dpk-Ny~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp-~N~SA----------------W  204 (349)
T 3q7a_A          143 SEIEYIHGSLLPDPK-NYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDG-RNNSA----------------W  204 (349)
T ss_dssp             HHHHHHHHHTSSCTT-CHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCT-TCHHH----------------H
T ss_pred             HHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCC-CCHHH----------------H
Confidence            999999999887544 7888887666666666666        89999999988643 24444                5


Q ss_pred             HHHHHHHHhcCC-------hhHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCChhh-----------------HHHHH
Q 036107          337 NTMISSACVRSE-------EGNALKLRQKIEEDSCKP-DCETHARSLKMCCHKKRMKD-----------------GMLVL  391 (441)
Q Consensus       337 ~~li~~~~~~g~-------~~~a~~~~~~m~~~g~~p-~~~t~~~li~~~~~~g~~~~-----------------a~~~~  391 (441)
                      +---..+.+.++       ++++++.+++....  .| |...|+-+-..+.+.|+...                 -..+.
T Consensus       205 ~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~--~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  282 (349)
T 3q7a_A          205 GWRWYLRVSRPGAETSSRSLQDELIYILKSIHL--IPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVE  282 (349)
T ss_dssp             HHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC-----------
T ss_pred             HHHHHHHHhccccccchHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHH
Confidence            544444444444       57888888887764  44 44556554445555554310                 01112


Q ss_pred             HHHHHHHHCC-----CCCCHHHHHHHHHHHHhcCCccHHHHHHHHHH
Q 036107          392 NLMREMLSKG-----IVPQESTHKMLAEELEKKSLGNAKERIDELLT  433 (441)
Q Consensus       392 ~~~~~m~~~~-----~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~  433 (441)
                      +...++...+     -.++......|.+.|...|+.++|.++++.+.
T Consensus       283 ~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~  329 (349)
T 3q7a_A          283 AFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLS  329 (349)
T ss_dssp             ---CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence            2222221111     14677889999999999999999999999985

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=97.86  E-value=0.00015  Score=53.76  Aligned_cols=96  Identities=6%  Similarity=-0.124  Sum_probs=47.2

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHH
Q 036107          215 FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCK-PSVITCTIVMHALE  293 (441)
Q Consensus       215 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~-p~~~~~~~ll~~~~  293 (441)
                      +..+...+.+.|++++|...|++..+.. +.+...|..+...+...|++++|...|++..+.... .+...+..+..++.
T Consensus         9 ~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~~~   87 (112)
T 2kck_A            9 YYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADALR   87 (112)
T ss_dssp             GGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHHHH
Confidence            4444444555555555555555544321 123344555555555555555555555555443210 03445555555555


Q ss_pred             hc-CCHHHHHHHHHHHhhC
Q 036107          294 KA-KQIYEALKVYEKMKSD  311 (441)
Q Consensus       294 ~~-~~~~~a~~~~~~m~~~  311 (441)
                      +. |++++|.+.+....+.
T Consensus        88 ~~~~~~~~A~~~~~~~~~~  106 (112)
T 2kck_A           88 YIEGKEVEAEIAEARAKLE  106 (112)
T ss_dssp             TCSSCSHHHHHHHHHHGGG
T ss_pred             HHhCCHHHHHHHHHHHhhc
Confidence            55 5555555555555543

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=97.85  E-value=0.00048  Score=53.38  Aligned_cols=96  Identities=6%  Similarity=-0.008  Sum_probs=42.2

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHH
Q 036107          178 TRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHY  257 (441)
Q Consensus       178 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~  257 (441)
                      ...+..+-..+...|++++|...|+..-...+.+...|..+..++...|++++|...|++..+.. +.+...|..+-.++
T Consensus         9 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~   87 (137)
T 3q49_B            9 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQCQ   87 (137)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHHHHHHHH
Confidence            33444444444444444444444444322222333444444444444444444444444444321 11234444444444


Q ss_pred             HhcCCHHHHHHHHHHHH
Q 036107          258 CREKDFRKVDYTLKEMQ  274 (441)
Q Consensus       258 ~~~g~~~~a~~l~~~m~  274 (441)
                      ...|++++|...|++..
T Consensus        88 ~~~~~~~~A~~~~~~a~  104 (137)
T 3q49_B           88 LEMESYDEAIANLQRAY  104 (137)
T ss_dssp             HHTTCHHHHHHHHHHHH
T ss_pred             HHHhhHHHHHHHHHHHH
Confidence            55555555555554443

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.84  E-value=0.0015  Score=61.71  Aligned_cols=164  Identities=10%  Similarity=-0.093  Sum_probs=76.1

Q ss_pred             HHHHhcCCHHHHHHHHHHhhhCCCC--c---------------HHHHHHHHHHHHhcCCHHHHHHHHHHHhhC-CCCCCH
Q 036107          186 DTLVKRNSVAHAYKVFLKFKDCISL--S---------------SQIFDVLIHGWCKTRKSDYAQKAMKEMFQH-GFSPDG  247 (441)
Q Consensus       186 ~~~~~~g~~~~a~~~~~~~~~~~~~--~---------------~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-g~~p~~  247 (441)
                      ..+.+.|++++|++.|..+.+..+.  +               ...+..+...|.+.|++++|.+.+.+.... +-.++.
T Consensus        12 ~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~   91 (434)
T 4b4t_Q           12 RRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKS   91 (434)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccch
Confidence            3455667777777777665221111  1               012445556666666666666666555431 001111


Q ss_pred             h----hHHHHHHHHHhcCCHHHHHHHHHHHHH----cCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHH
Q 036107          248 V----SYTCFIEHYCREKDFRKVDYTLKEMQE----KGCKPS-VITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTS  318 (441)
Q Consensus       248 ~----~~~~li~~~~~~g~~~~a~~l~~~m~~----~g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~  318 (441)
                      .    +.+.+-..+...|++++|..++++...    .+..+. ..++..+...|...|++++|..++++....-...+..
T Consensus        92 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~  171 (434)
T 4b4t_Q           92 KTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDK  171 (434)
T ss_dssp             HHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCS
T ss_pred             HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccc
Confidence            1    111111222234556666665555432    122222 3445555556666666666666666555521111100


Q ss_pred             HHHHHHHHHHhcCccchHHHHHHHHHhcCChhHHHHHHHHHH
Q 036107          319 FYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIE  360 (441)
Q Consensus       319 ~~~~li~~~~~~g~~~~~~~li~~~~~~g~~~~a~~~~~~m~  360 (441)
                      .           ....+|..++..|...|++++|..++++..
T Consensus       172 ~-----------~~~~~~~~~~~~~~~~~~~~~A~~~~~~al  202 (434)
T 4b4t_Q          172 P-----------SLVDVHLLESKVYHKLRNLAKSKASLTAAR  202 (434)
T ss_dssp             T-----------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             h-----------hHHHHHHHHHHHHHHhCcHHHHHHHHHHHH
Confidence            0           000445555555666666666665555543

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.84  E-value=0.00096  Score=52.22  Aligned_cols=99  Identities=16%  Similarity=0.010  Sum_probs=73.6

Q ss_pred             CcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC----HhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 036107          210 LSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPD----GVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITC  285 (441)
Q Consensus       210 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~----~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~  285 (441)
                      .+...+..+...+.+.|++++|.+.|++..+.  .|+    ...|..+...+...|++++|...+++..+... .+...+
T Consensus        26 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~  102 (148)
T 2dba_A           26 SSVEQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDG-GDVKAL  102 (148)
T ss_dssp             CCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTS-CCHHHH
T ss_pred             HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCc-cCHHHH
Confidence            35566777777778888888888888887764  355    56777777778888888888888888766532 256677


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHhhC
Q 036107          286 TIVMHALEKAKQIYEALKVYEKMKSD  311 (441)
Q Consensus       286 ~~ll~~~~~~~~~~~a~~~~~~m~~~  311 (441)
                      ..+..++...|++++|...|++..+.
T Consensus       103 ~~~a~~~~~~~~~~~A~~~~~~al~~  128 (148)
T 2dba_A          103 YRRSQALEKLGRLDQAVLDLQRCVSL  128 (148)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence            77778888888888888888877764

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=97.83  E-value=0.00035  Score=58.41  Aligned_cols=134  Identities=8%  Similarity=-0.054  Sum_probs=97.9

Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCc----------------HHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 036107          177 DTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLS----------------SQIFDVLIHGWCKTRKSDYAQKAMKEMFQ  240 (441)
Q Consensus       177 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~----------------~~~~~~li~~~~~~~~~~~a~~~~~~m~~  240 (441)
                      ....+..+-..+.+.|++++|.+.|++.-...+.+                ...|..+-.+|.+.|++++|...+++..+
T Consensus        37 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~  116 (198)
T 2fbn_A           37 SAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLK  116 (198)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence            34567777788899999999999999874322222                26788888999999999999999999987


Q ss_pred             CCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHH-HHHHHHhhCC
Q 036107          241 HGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEAL-KVYEKMKSDD  312 (441)
Q Consensus       241 ~g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~-~~~~~m~~~g  312 (441)
                      .. +.+...|..+-.++...|++++|...|++..+... -+...+..+..++...++.+++. ..|..|...|
T Consensus       117 ~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~~~  187 (198)
T 2fbn_A          117 ID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASLNP-NNLDIRNSYELCVNKLKEARKKDKLTFGGMFDKG  187 (198)
T ss_dssp             HS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHHHHHC-------------
T ss_pred             hC-cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            52 23577888999999999999999999999887632 35677888888888887777766 5566665543

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=97.81  E-value=0.00046  Score=52.79  Aligned_cols=99  Identities=15%  Similarity=0.078  Sum_probs=84.9

Q ss_pred             cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 036107          211 SSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMH  290 (441)
Q Consensus       211 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~  290 (441)
                      +...+..+-..+.+.|++++|...|++..+.. +.+...|..+-.++.+.|++++|...|++..+... -+...|..+-.
T Consensus         3 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~   80 (126)
T 3upv_A            3 KAEEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDP-NFVRAYIRKAT   80 (126)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CcHHHHHHHHH
Confidence            34567778888999999999999999988743 23578899999999999999999999999988643 36788999999


Q ss_pred             HHHhcCCHHHHHHHHHHHhhC
Q 036107          291 ALEKAKQIYEALKVYEKMKSD  311 (441)
Q Consensus       291 ~~~~~~~~~~a~~~~~~m~~~  311 (441)
                      ++...|++++|...|++..+.
T Consensus        81 ~~~~~~~~~~A~~~~~~al~~  101 (126)
T 3upv_A           81 AQIAVKEYASALETLDAARTK  101 (126)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHhCHHHHHHHHHHHHHh
Confidence            999999999999999998764

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=97.81  E-value=0.0004  Score=53.49  Aligned_cols=96  Identities=9%  Similarity=0.016  Sum_probs=48.4

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCC--CCC----HhhHHHH
Q 036107          180 AMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGF--SPD----GVSYTCF  253 (441)
Q Consensus       180 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~--~p~----~~~~~~l  253 (441)
                      ++..+-..+.+.|++++|++.|++.-.-.+.+...|+.+-.+|.+.|++++|++.|++..+...  .++    ..+|..+
T Consensus        10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l   89 (127)
T 4gcn_A           10 AEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRA   89 (127)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHH
Confidence            4444555556666666666666554332334455555555666666666666666655543210  000    1234444


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHH
Q 036107          254 IEHYCREKDFRKVDYTLKEMQE  275 (441)
Q Consensus       254 i~~~~~~g~~~~a~~l~~~m~~  275 (441)
                      -.++...|++++|++.|++..+
T Consensus        90 g~~~~~~~~~~~A~~~~~kal~  111 (127)
T 4gcn_A           90 GNAFQKQNDLSLAVQWFHRSLS  111 (127)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHh
Confidence            4445555555555555555443

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=97.79  E-value=0.00022  Score=56.72  Aligned_cols=133  Identities=13%  Similarity=-0.035  Sum_probs=100.8

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHhhh----CCCC--cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC----CCCC-C
Q 036107          178 TRAMSVLMDTLVKRNSVAHAYKVFLKFKD----CISL--SSQIFDVLIHGWCKTRKSDYAQKAMKEMFQH----GFSP-D  246 (441)
Q Consensus       178 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~----~~~~--~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----g~~p-~  246 (441)
                      ..++..+-..+...|++++|...+++...    ...+  ...++..+-..+...|++++|.+.+++..+.    +-.+ .
T Consensus         9 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~   88 (164)
T 3ro3_A            9 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVE   88 (164)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHH
Confidence            45677788888999999999999987622    1111  1246788888999999999999999987642    1111 1


Q ss_pred             HhhHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 036107          247 GVSYTCFIEHYCREKDFRKVDYTLKEMQEK----GCKP-SVITCTIVMHALEKAKQIYEALKVYEKMKS  310 (441)
Q Consensus       247 ~~~~~~li~~~~~~g~~~~a~~l~~~m~~~----g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~  310 (441)
                      ..++..+-..+...|++++|...+++..+.    +..+ ...++..+...+...|++++|.+.+++..+
T Consensus        89 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~  157 (164)
T 3ro3_A           89 AQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE  157 (164)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence            456778888899999999999999987543    2211 245677888899999999999999988765

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=97.78  E-value=0.00065  Score=54.78  Aligned_cols=99  Identities=5%  Similarity=0.023  Sum_probs=78.9

Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHH
Q 036107          177 DTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEH  256 (441)
Q Consensus       177 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~  256 (441)
                      +...+..+-..+.+.|++++|++.|++.-...+.+...|..+-.+|.+.|++++|...|++..+.. +-+...|..+-.+
T Consensus        10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~   88 (164)
T 3sz7_A           10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSRLGLA   88 (164)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence            456677777888889999999999988755445577788888888899999999999998887743 2246778888888


Q ss_pred             HHhcCCHHHHHHHHHHHHHc
Q 036107          257 YCREKDFRKVDYTLKEMQEK  276 (441)
Q Consensus       257 ~~~~g~~~~a~~l~~~m~~~  276 (441)
                      +...|++++|...|++..+.
T Consensus        89 ~~~~g~~~~A~~~~~~al~~  108 (164)
T 3sz7_A           89 RFDMADYKGAKEAYEKGIEA  108 (164)
T ss_dssp             HHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHccCHHHHHHHHHHHHHh
Confidence            88899999999998887664

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=97.77  E-value=0.00057  Score=52.94  Aligned_cols=101  Identities=16%  Similarity=-0.003  Sum_probs=87.5

Q ss_pred             CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 036107          209 SLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIV  288 (441)
Q Consensus       209 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~l  288 (441)
                      +.+...+..+-..+.+.|++++|...|++..... +.+...|..+...+...|++++|...+++..+... .+...+..+
T Consensus         6 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l   83 (137)
T 3q49_B            6 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDG-QSVKAHFFL   83 (137)
T ss_dssp             CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHH
T ss_pred             cccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCc-hhHHHHHHH
Confidence            3567788899999999999999999999988753 23578899999999999999999999999988643 367889999


Q ss_pred             HHHHHhcCCHHHHHHHHHHHhhC
Q 036107          289 MHALEKAKQIYEALKVYEKMKSD  311 (441)
Q Consensus       289 l~~~~~~~~~~~a~~~~~~m~~~  311 (441)
                      ..++...|++++|...|....+.
T Consensus        84 ~~~~~~~~~~~~A~~~~~~a~~~  106 (137)
T 3q49_B           84 GQCQLEMESYDEAIANLQRAYSL  106 (137)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhHHHHHHHHHHHHHH
Confidence            99999999999999999988763

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=97.77  E-value=0.00045  Score=55.73  Aligned_cols=99  Identities=9%  Similarity=-0.042  Sum_probs=86.4

Q ss_pred             CHHHHHHHHHHHHcCCChhHHHHHHHHHHHhcCCCccHHHHHHHHhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCC
Q 036107          129 TPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCI  208 (441)
Q Consensus       129 ~~~~y~~li~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~  208 (441)
                      +...|..+-..+.+.|++++|++.|++..+..+.              +...|..+-.++.+.|++++|+..|++.-...
T Consensus        10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~--------------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~   75 (164)
T 3sz7_A           10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPA--------------NPIYLSNRAAAYSASGQHEKAAEDAELATVVD   75 (164)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT--------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc--------------CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence            4567888889999999999999999999886532              67889999999999999999999999885544


Q ss_pred             CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 036107          209 SLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQH  241 (441)
Q Consensus       209 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~  241 (441)
                      +.+...|..+-.+|.+.|++++|.+.|++..+.
T Consensus        76 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~  108 (164)
T 3sz7_A           76 PKYSKAWSRLGLARFDMADYKGAKEAYEKGIEA  108 (164)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence            567888999999999999999999999998874

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=97.74  E-value=0.0013  Score=50.57  Aligned_cols=107  Identities=10%  Similarity=-0.031  Sum_probs=84.6

Q ss_pred             HHHHHHHHHHHHcCCChhHHHHHHHHHHHhcCCCccHHHHHHHHhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhh---
Q 036107          130 PETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKD---  206 (441)
Q Consensus       130 ~~~y~~li~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~---  206 (441)
                      ...+..+-..+.+.|++++|++.|++..+..|.              +...|..+-.+|.+.|++++|++.|++.-.   
T Consensus         8 A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~--------------~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~   73 (127)
T 4gcn_A            8 AIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPS--------------NITFYNNKAAVYFEEKKFAECVQFCEKAVEVGR   73 (127)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--------------CHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCc
Confidence            356778888999999999999999999886533              678899999999999999999999987621   


Q ss_pred             CCCCc----HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHH
Q 036107          207 CISLS----SQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTC  252 (441)
Q Consensus       207 ~~~~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~  252 (441)
                      ...++    ..+|..+-.++...|++++|.+.|++...  ..||..+...
T Consensus        74 ~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~--~~~~~~~~~~  121 (127)
T 4gcn_A           74 ETRADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLS--EFRDPELVKK  121 (127)
T ss_dssp             HTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSCCHHHHHH
T ss_pred             ccchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCcCHHHHHH
Confidence            22222    24677778889999999999999999876  3466654433

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=97.73  E-value=0.00048  Score=54.14  Aligned_cols=94  Identities=9%  Similarity=-0.118  Sum_probs=50.1

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 036107          215 FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEK  294 (441)
Q Consensus       215 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~  294 (441)
                      +..+-..+.+.|++++|...|++..... +.+...|..+-.++.+.|++++|...|++..+... -+...+..+-.++..
T Consensus        21 ~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~   98 (142)
T 2xcb_A           21 LYALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMDI-NEPRFPFHAAECHLQ   98 (142)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCcHHHHHHHHHHHH
Confidence            3344445555566666666665555421 12344555555555566666666666665555422 234455555555666


Q ss_pred             cCCHHHHHHHHHHHhh
Q 036107          295 AKQIYEALKVYEKMKS  310 (441)
Q Consensus       295 ~~~~~~a~~~~~~m~~  310 (441)
                      .|++++|...|+...+
T Consensus        99 ~g~~~~A~~~~~~al~  114 (142)
T 2xcb_A           99 LGDLDGAESGFYSARA  114 (142)
T ss_dssp             TTCHHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHH
Confidence            6666666666655544

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=97.71  E-value=0.00053  Score=54.47  Aligned_cols=138  Identities=10%  Similarity=-0.057  Sum_probs=101.7

Q ss_pred             HHHHHHHHHHHHcCCChhHHHHHHHHHHHhcCCCccHHHHHHHHhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhh---
Q 036107          130 PETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKD---  206 (441)
Q Consensus       130 ~~~y~~li~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~---  206 (441)
                      ..+|..+-..+...|++++|.+.+++.....+.......        -..++..+-..+...|++++|.+.++....   
T Consensus         9 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~--------~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~   80 (164)
T 3ro3_A            9 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAA--------ERIAYSNLGNAYIFLGEFETASEYYKKTLLLAR   80 (164)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHH--------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchH--------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence            356788888889999999999999988764311111000        135778888899999999999999988622   


Q ss_pred             --CCC-CcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC----CCCC-CHhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 036107          207 --CIS-LSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQH----GFSP-DGVSYTCFIEHYCREKDFRKVDYTLKEMQE  275 (441)
Q Consensus       207 --~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----g~~p-~~~~~~~li~~~~~~g~~~~a~~l~~~m~~  275 (441)
                        +.. .....+..+-..+...|++++|.+.+++..+.    +..+ ...++..+-..+...|++++|.+.+++..+
T Consensus        81 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~  157 (164)
T 3ro3_A           81 QLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE  157 (164)
T ss_dssp             HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence              111 12456777888899999999999999887642    2111 235677888889999999999999998765

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.70  E-value=0.0014  Score=51.21  Aligned_cols=101  Identities=11%  Similarity=-0.096  Sum_probs=64.1

Q ss_pred             CHHHHHHHHHHHHcCCChhHHHHHHHHHHHhcCCCccHHHHHHHHhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCC
Q 036107          129 TPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCI  208 (441)
Q Consensus       129 ~~~~y~~li~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~  208 (441)
                      +...|..+-..+.+.|++++|.+.|++..+..+..+           .....+..+...+...|++++|...++......
T Consensus        27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~-----------~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~   95 (148)
T 2dba_A           27 SVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQ-----------DQAVLHRNRAACHLKLEDYDKAETEASKAIEKD   95 (148)
T ss_dssp             CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHH-----------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccch-----------HHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC
Confidence            566777777777777888888888877766431100           014556666666677777777777776653333


Q ss_pred             CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 036107          209 SLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQ  240 (441)
Q Consensus       209 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~  240 (441)
                      +.+...+..+..++...|++++|.+.|++..+
T Consensus        96 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~  127 (148)
T 2dba_A           96 GGDVKALYRRSQALEKLGRLDQAVLDLQRCVS  127 (148)
T ss_dssp             SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             ccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            33455666666666667777777777766655

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=97.68  E-value=0.0015  Score=57.58  Aligned_cols=202  Identities=7%  Similarity=-0.079  Sum_probs=132.2

Q ss_pred             ChHHHHHHHhhhhhHhhhhcCCCCC-CHHHHHHH-------HHHHHcCCChhHHHHHHHHHHHhcCCCccHHHH-HHHH-
Q 036107          104 SPDKVVEALKCFCFTWAKTQTGYMH-TPETYNAM-------VEALGKSKKFGLMWELVKEIDELSNGYVSLAAM-STVM-  173 (441)
Q Consensus       104 ~~g~~~~A~~~~~~~~~~~~~g~~p-~~~~y~~l-------i~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~-~~~~-  173 (441)
                      ..++...|++.|......     .| ....|..+       ...+.+.++..+++..+..-....+.......- ..+. 
T Consensus        18 ~~~d~~~A~~~F~~a~~~-----dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~   92 (282)
T 4f3v_A           18 LPMSEARSLDLFTEITNY-----DESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYG   92 (282)
T ss_dssp             TTTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTC
T ss_pred             cCCCHHHHHHHHHHHHHh-----ChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCccc
Confidence            478899999999644433     24 36788877       455555555555555444433311110000000 0000 


Q ss_pred             ----hhc-CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC--
Q 036107          174 ----RRL-DTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPD--  246 (441)
Q Consensus       174 ----~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~--  246 (441)
                          ... -....-.+...+...|++++|.++|+.+...- |+....-.+-..+.+.+++++|+..|+...... .|.  
T Consensus        93 ~~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~-p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~  170 (282)
T 4f3v_A           93 DITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG-SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLA  170 (282)
T ss_dssp             CCEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT-CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHH
T ss_pred             ccccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccH
Confidence                000 02334456677889999999999999885433 433355555668899999999999998665431 111  


Q ss_pred             HhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCC
Q 036107          247 GVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPS--VITCTIVMHALEKAKQIYEALKVYEKMKSDD  312 (441)
Q Consensus       247 ~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g  312 (441)
                      ...+..+-.++.+.|++++|+..|++.......|.  .......-.++.+.|+.++|..+|+++....
T Consensus       171 ~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~  238 (282)
T 4f3v_A          171 GAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTH  238 (282)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence            23677788899999999999999999875443254  3456667778899999999999999999863

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=97.63  E-value=0.0031  Score=56.00  Aligned_cols=99  Identities=6%  Similarity=-0.012  Sum_probs=77.2

Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHH
Q 036107          177 DTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEH  256 (441)
Q Consensus       177 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~  256 (441)
                      +...+..+-..+.+.|++++|...|+..-...+.+...|..+-.+|.+.|++++|.+.+++..+.. +-+...+..+-.+
T Consensus         3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~   81 (281)
T 2c2l_A            3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQC   81 (281)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence            445667777788888999999999888744444577788888888889999999999998887642 2356778888888


Q ss_pred             HHhcCCHHHHHHHHHHHHHc
Q 036107          257 YCREKDFRKVDYTLKEMQEK  276 (441)
Q Consensus       257 ~~~~g~~~~a~~l~~~m~~~  276 (441)
                      +...|++++|...|++..+.
T Consensus        82 ~~~~g~~~~A~~~~~~al~l  101 (281)
T 2c2l_A           82 QLEMESYDEAIANLQRAYSL  101 (281)
T ss_dssp             HHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHh
Confidence            88889999999888887653

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=97.62  E-value=0.048  Score=52.62  Aligned_cols=298  Identities=6%  Similarity=-0.117  Sum_probs=149.7

Q ss_pred             HHHHHHHhhhhhHhhhhcCCCCCCHHHHHHHHHHHHcCCC-hhHHHHHHHHHHHh-cCCCccHHHHHHHHhhcCHHHHHH
Q 036107          106 DKVVEALKCFCFTWAKTQTGYMHTPETYNAMVEALGKSKK-FGLMWELVKEIDEL-SNGYVSLAAMSTVMRRLDTRAMSV  183 (441)
Q Consensus       106 g~~~~A~~~~~~~~~~~~~g~~p~~~~y~~li~~~~~~~~-~~~a~~l~~~m~~~-~~~~~~~~~~~~~~~~~~~~~~~~  183 (441)
                      |.++.|..+|+..-     ...|+...|...+.-..+.+. .+.+..+|+..... |..+.            +...|..
T Consensus        28 ~~~e~~~~iferal-----~~~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~------------s~~iW~~   90 (493)
T 2uy1_A           28 KDYRSLESLFGRCL-----KKSYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWD------------SYGLYKE   90 (493)
T ss_dssp             TCHHHHHHHHHHHS-----TTCCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTT------------CHHHHHH
T ss_pred             CCHHHHHHHHHHHh-----ccCCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcc------------cHHHHHH
Confidence            66888888885222     234799999998888877663 45677788876653 21222            4455555


Q ss_pred             HHHHHH----hcCCHHHHHHHHHHhhhCCCCc--HHHHHHHHHHHH-------------hcCCHHHHHHHHHHHhhCCCC
Q 036107          184 LMDTLV----KRNSVAHAYKVFLKFKDCISLS--SQIFDVLIHGWC-------------KTRKSDYAQKAMKEMFQHGFS  244 (441)
Q Consensus       184 li~~~~----~~g~~~~a~~~~~~~~~~~~~~--~~~~~~li~~~~-------------~~~~~~~a~~~~~~m~~~g~~  244 (441)
                      .+..+.    ..|+.+.+..+|++.-. +++.  ...|......-.             ..+.+..|..+++++...--.
T Consensus        91 Yi~f~~~~~~~~~~~~~vR~iy~rAL~-~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~  169 (493)
T 2uy1_A           91 YIEEEGKIEDEQTRIEKIRNGYMRALQ-TPMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRG  169 (493)
T ss_dssp             HHHHTSSCSSHHHHHHHHHHHHHHHHT-SCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHhchhhhHHHHHHHHHHHHHHh-ChhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHhh
Confidence            555433    24567778888877633 1111  112222111100             011233344444443321000


Q ss_pred             CCHhhHHHHHHHHHhcC--C-----HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCH
Q 036107          245 PDGVSYTCFIEHYCREK--D-----FRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDT  317 (441)
Q Consensus       245 p~~~~~~~li~~~~~~g--~-----~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~  317 (441)
                      .+...|...+.--...+  -     .+.+..+|++..... +-+...|...+.-+.+.|++++|.++|++....  +.+.
T Consensus       170 ~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~  246 (493)
T 2uy1_A          170 WSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGM  246 (493)
T ss_dssp             CSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSS
T ss_pred             ccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcH
Confidence            12334544444322211  0     344666777766642 334666777777777778888888888877766  2222


Q ss_pred             HHHHHHH-------------HHHHhc----------Ccc-chHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHH
Q 036107          318 SFYSSLI-------------FILSKA----------VRF-LIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHAR  373 (441)
Q Consensus       318 ~~~~~li-------------~~~~~~----------g~~-~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~  373 (441)
                      ..+....             ..+...          +.. ..|-..+....+.++.+.|..+|++....  .++...|..
T Consensus       247 ~l~~~y~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A~~~--~~~~~v~i~  324 (493)
T 2uy1_A          247 FLSLYYGLVMDEEAVYGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIELGNE--GVGPHVFIY  324 (493)
T ss_dssp             HHHHHHHHHTTCTHHHHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHTTS--CCCHHHHHH
T ss_pred             HHHHHHHhhcchhHHHHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHhhCC--CCChHHHHH
Confidence            2211111             010000          000 33555666666677788888888887211  123334432


Q ss_pred             --HHHHHHhcCChhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCccHHHHHHHH
Q 036107          374 --SLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEKKSLGNAKERIDEL  431 (441)
Q Consensus       374 --li~~~~~~g~~~~a~~~~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~  431 (441)
                        .+... ..++.+.|..+++...+   . ..-+...+...++...+.|+.+.|..+++.
T Consensus       325 ~A~lE~~-~~~d~~~ar~ife~al~---~-~~~~~~~~~~yid~e~~~~~~~~aR~l~er  379 (493)
T 2uy1_A          325 CAFIEYY-ATGSRATPYNIFSSGLL---K-HPDSTLLKEEFFLFLLRIGDEENARALFKR  379 (493)
T ss_dssp             HHHHHHH-HHCCSHHHHHHHHHHHH---H-CTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             HHHHHHH-HCCChHHHHHHHHHHHH---H-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence              22221 12357778775553332   1 111233444555555666666666666555

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=97.59  E-value=0.00079  Score=51.32  Aligned_cols=92  Identities=8%  Similarity=-0.068  Sum_probs=56.3

Q ss_pred             HHHHHHHcCCChhHHHHHHHHHHHhcCCCccHHHHHHHHhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcHHH
Q 036107          135 AMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQI  214 (441)
Q Consensus       135 ~li~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~  214 (441)
                      .+-..+.+.|++++|...|++..+..+.              +...+..+-.++...|++++|+..|++.-...+-+...
T Consensus        22 ~~g~~~~~~g~~~~A~~~~~~al~~~P~--------------~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~   87 (121)
T 1hxi_A           22 EEGLSMLKLANLAEAALAFEAVCQKEPE--------------REEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAV   87 (121)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHSTT--------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHCCC--------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Confidence            3444556666777777777766664422              45566666666666677777766666653333344555


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHhh
Q 036107          215 FDVLIHGWCKTRKSDYAQKAMKEMFQ  240 (441)
Q Consensus       215 ~~~li~~~~~~~~~~~a~~~~~~m~~  240 (441)
                      +..+..++.+.|++++|...|++..+
T Consensus        88 ~~~la~~~~~~g~~~~A~~~~~~al~  113 (121)
T 1hxi_A           88 HAALAVSHTNEHNANAALASLRAWLL  113 (121)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            66666666666666666666666654

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=97.54  E-value=0.00025  Score=53.65  Aligned_cols=85  Identities=9%  Similarity=0.002  Sum_probs=47.6

Q ss_pred             cCCHHHHHHHHHHHhhCC--CCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 036107          225 TRKSDYAQKAMKEMFQHG--FSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEAL  302 (441)
Q Consensus       225 ~~~~~~a~~~~~~m~~~g--~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~  302 (441)
                      .|++++|...|++..+.+  -+-+...|..+-..+.+.|++++|...|++..+.... +...+..+..++.+.|++++|.
T Consensus         3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~   81 (117)
T 3k9i_A            3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPN-HQALRVFYAMVLYNLGRYEQGV   81 (117)
T ss_dssp             ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHH
T ss_pred             CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHcCCHHHHH
Confidence            355666666666665532  1123345556666666666666666666666554322 3555666666666666666666


Q ss_pred             HHHHHHhh
Q 036107          303 KVYEKMKS  310 (441)
Q Consensus       303 ~~~~~m~~  310 (441)
                      ..|++..+
T Consensus        82 ~~~~~al~   89 (117)
T 3k9i_A           82 ELLLKIIA   89 (117)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            66666554

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=97.53  E-value=0.0021  Score=48.98  Aligned_cols=90  Identities=14%  Similarity=0.139  Sum_probs=48.4

Q ss_pred             HHHHHhcCCHHHHHHHHHHhhhCCCCcH---HHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC----HhhHHHHHHHH
Q 036107          185 MDTLVKRNSVAHAYKVFLKFKDCISLSS---QIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPD----GVSYTCFIEHY  257 (441)
Q Consensus       185 i~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~----~~~~~~li~~~  257 (441)
                      ...+.+.|++++|.+.|+......+.+.   ..+..+-.++.+.|++++|...|++..+..  |+    ...+..+..++
T Consensus         9 a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~~~~la~~~   86 (129)
T 2xev_A            9 AFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY--PTHDKAAGGLLKLGLSQ   86 (129)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTSTTHHHHHHHHHHHH
T ss_pred             HHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC--CCCcccHHHHHHHHHHH
Confidence            3445556666666666665532212222   345555556666666666666666655432  22    34455555556


Q ss_pred             HhcCCHHHHHHHHHHHHHc
Q 036107          258 CREKDFRKVDYTLKEMQEK  276 (441)
Q Consensus       258 ~~~g~~~~a~~l~~~m~~~  276 (441)
                      .+.|++++|...|++..+.
T Consensus        87 ~~~g~~~~A~~~~~~~~~~  105 (129)
T 2xev_A           87 YGEGKNTEAQQTLQQVATQ  105 (129)
T ss_dssp             HHTTCHHHHHHHHHHHHHH
T ss_pred             HHcCCHHHHHHHHHHHHHH
Confidence            6666666666666665554

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=97.49  E-value=0.0037  Score=47.60  Aligned_cols=96  Identities=15%  Similarity=0.007  Sum_probs=75.9

Q ss_pred             HHHHHHHcCCChhHHHHHHHHHHHhcCCCccHHHHHHHHhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCc---
Q 036107          135 AMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLS---  211 (441)
Q Consensus       135 ~li~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~---  211 (441)
                      .+-..+.+.|++++|.+.|++..+..+..+.           ....+..+..++.+.|++++|...|+..-...+.+   
T Consensus         7 ~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~-----------~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~   75 (129)
T 2xev_A            7 NVAFDALKNGKYDDASQLFLSFLELYPNGVY-----------TPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKA   75 (129)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCSSSTT-----------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTH
T ss_pred             HHHHHHHHhCCHHHHHHHHHHHHHHCCCCcc-----------cHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCccc
Confidence            3455677899999999999999886533221           12577778888999999999999999884433333   


Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 036107          212 SQIFDVLIHGWCKTRKSDYAQKAMKEMFQH  241 (441)
Q Consensus       212 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~  241 (441)
                      ...+..+..++.+.|++++|...|++..+.
T Consensus        76 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~  105 (129)
T 2xev_A           76 AGGLLKLGLSQYGEGKNTEAQQTLQQVATQ  105 (129)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            566888889999999999999999999874

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=97.46  E-value=0.088  Score=50.72  Aligned_cols=206  Identities=8%  Similarity=0.015  Sum_probs=131.0

Q ss_pred             HHHHHHHHHHhhhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 036107          194 VAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEM  273 (441)
Q Consensus       194 ~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m  273 (441)
                      .+.+..+|++.-...+-+...|-..+..+.+.|+++.|..+|++....   |.......   .|+...+.++.   ++.+
T Consensus       195 ~~Rv~~~ye~al~~~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~---P~~~~l~~---~y~~~~e~~~~---~~~l  265 (493)
T 2uy1_A          195 ESRMHFIHNYILDSFYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM---SDGMFLSL---YYGLVMDEEAV---YGDL  265 (493)
T ss_dssp             HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CCSSHHHH---HHHHHTTCTHH---HHHH
T ss_pred             HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC---CCcHHHHH---HHHhhcchhHH---HHHH
Confidence            345667888775545566778888888889999999999999999986   44432221   23322221222   2332


Q ss_pred             HHcC---------CCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCccchHHHHHH
Q 036107          274 QEKG---------CKP---SVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMIS  341 (441)
Q Consensus       274 ~~~g---------~~p---~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~~~li~  341 (441)
                      .+.-         ..+   ....|...+....+.++.+.|..+|+.....+  .+..+|.              ..+.+.
T Consensus       266 ~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A~~~~--~~~~v~i--------------~~A~lE  329 (493)
T 2uy1_A          266 KRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIELGNEG--VGPHVFI--------------YCAFIE  329 (493)
T ss_dssp             HHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHTTSC--CCHHHHH--------------HHHHHH
T ss_pred             HHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHhhCCC--CChHHHH--------------HHHHHH
Confidence            2210         011   12456677777777889999999999992222  2322211              122233


Q ss_pred             HHHhcCChhHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 036107          342 SACVRSEEGNALKLRQKIEEDSCKPD-CETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEKKS  420 (441)
Q Consensus       342 ~~~~~g~~~~a~~~~~~m~~~g~~p~-~~t~~~li~~~~~~g~~~~a~~~~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g  420 (441)
                      ... .++.+.|.++|+...+.-  |+ ...+...++-..+.|+.+.|+.+++   +.     .-....|...++.-...|
T Consensus       330 ~~~-~~d~~~ar~ife~al~~~--~~~~~~~~~yid~e~~~~~~~~aR~l~e---r~-----~k~~~lw~~~~~fE~~~G  398 (493)
T 2uy1_A          330 YYA-TGSRATPYNIFSSGLLKH--PDSTLLKEEFFLFLLRIGDEENARALFK---RL-----EKTSRMWDSMIEYEFMVG  398 (493)
T ss_dssp             HHH-HCCSHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHH---HS-----CCBHHHHHHHHHHHHHHS
T ss_pred             HHH-CCChHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHcCCHHHHHHHHH---HH-----HHHHHHHHHHHHHHHHCC
Confidence            222 336899999999987643  33 3345566777778899999887544   42     225677888888778889


Q ss_pred             CccHHHHHHHHHHHH
Q 036107          421 LGNAKERIDELLTHA  435 (441)
Q Consensus       421 ~~~~a~~~~~~m~~~  435 (441)
                      +.+.+.++++.....
T Consensus       399 ~~~~~r~v~~~~~~~  413 (493)
T 2uy1_A          399 SMELFRELVDQKMDA  413 (493)
T ss_dssp             CHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHH
Confidence            999999988876653

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=97.45  E-value=0.00048  Score=66.48  Aligned_cols=118  Identities=10%  Similarity=-0.019  Sum_probs=91.2

Q ss_pred             HHHHcCCChhHHHHHHHHHHHhcCCCccHHHHHHHHhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcHHHHHH
Q 036107          138 EALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDV  217 (441)
Q Consensus       138 ~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~  217 (441)
                      ..+.+.|++++|.+.+++..+..+.              +..++..+-.++.+.|++++|++.+++.-+..+.+...|..
T Consensus        14 ~~~~~~g~~~~A~~~~~~Al~~~p~--------------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~   79 (477)
T 1wao_1           14 NDYFKAKDYENAIKFYSQAIELNPS--------------NAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYR   79 (477)
T ss_dssp             SSTTTTTCHHHHHHHHHHHHHHCTT--------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred             HHHHHhCCHHHHHHHHHHHHHhCCc--------------cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence            3456789999999999998886522              67889999999999999999999999886555667788999


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHhhCCCCC-CHhhHHHHHHH--HHhcCCHHHHHHHHH
Q 036107          218 LIHGWCKTRKSDYAQKAMKEMFQHGFSP-DGVSYTCFIEH--YCREKDFRKVDYTLK  271 (441)
Q Consensus       218 li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~--~~~~g~~~~a~~l~~  271 (441)
                      +-.+|.+.|++++|.+.|++..+.  .| +...+..+-.+  +.+.|++++|.+.++
T Consensus        80 lg~~~~~~g~~~eA~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~  134 (477)
T 1wao_1           80 RAASNMALGKFRAALRDYETVVKV--KPHDKDAKMKYQECNKIVKQKAFERAIAGDE  134 (477)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHH--STTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence            999999999999999999998874  23 33455555555  788899999999988

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=97.43  E-value=0.0013  Score=50.07  Aligned_cols=91  Identities=9%  Similarity=-0.062  Sum_probs=48.5

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 036107          218 LIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQ  297 (441)
Q Consensus       218 li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~  297 (441)
                      +-..+.+.|++++|...|++..+.. +.+...|..+-.++...|++++|+..|++..+.... +...+..+..++.+.|+
T Consensus        23 ~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~~~~~la~~~~~~g~  100 (121)
T 1hxi_A           23 EGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK-DIAVHAALAVSHTNEHN  100 (121)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCC
Confidence            3444555556666666555555421 113445555555555566666666666555544221 34455555555666666


Q ss_pred             HHHHHHHHHHHhh
Q 036107          298 IYEALKVYEKMKS  310 (441)
Q Consensus       298 ~~~a~~~~~~m~~  310 (441)
                      +++|...|++..+
T Consensus       101 ~~~A~~~~~~al~  113 (121)
T 1hxi_A          101 ANAALASLRAWLL  113 (121)
T ss_dssp             HHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHH
Confidence            6666666655554

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=97.40  E-value=0.00048  Score=66.47  Aligned_cols=119  Identities=11%  Similarity=0.001  Sum_probs=92.1

Q ss_pred             HHHHhcCCHHHHHHHHHHhhhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHH
Q 036107          186 DTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRK  265 (441)
Q Consensus       186 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~  265 (441)
                      ..+.+.|++++|.+.|++.-+..+.+...|..+-.+|.+.|++++|.+.|++..+.. +-+...|..+-.+|.+.|++++
T Consensus        14 ~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~~~e   92 (477)
T 1wao_1           14 NDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKFRA   92 (477)
T ss_dssp             SSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHTCHHH
T ss_pred             HHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHH
Confidence            345678999999999998855445678899999999999999999999999998853 2356789999999999999999


Q ss_pred             HHHHHHHHHHcCCCCCHHHHHHHHHH--HHhcCCHHHHHHHHH
Q 036107          266 VDYTLKEMQEKGCKPSVITCTIVMHA--LEKAKQIYEALKVYE  306 (441)
Q Consensus       266 a~~l~~~m~~~g~~p~~~~~~~ll~~--~~~~~~~~~a~~~~~  306 (441)
                      |.+.|++..+.... +...+..+..+  +.+.|++++|.+.++
T Consensus        93 A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~g~~~~A~~~~~  134 (477)
T 1wao_1           93 ALRDYETVVKVKPH-DKDAKMKYQECNKIVKQKAFERAIAGDE  134 (477)
T ss_dssp             HHHHHHHHHHHSTT-CTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred             HHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence            99999998775321 23344444444  888899999999998

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=97.40  E-value=0.00048  Score=52.05  Aligned_cols=87  Identities=5%  Similarity=-0.177  Sum_probs=48.1

Q ss_pred             CCChhHHHHHHHHHHHhcCCCccHHHHHHHHhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcHHHHHHHHHHH
Q 036107          143 SKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGW  222 (441)
Q Consensus       143 ~~~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~  222 (441)
                      .|++++|++.|++..+.+...|.           +...+..+-..+.+.|++++|...|++.-...+-+...+..+..++
T Consensus         3 ~g~~~~A~~~~~~al~~~~~~p~-----------~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~   71 (117)
T 3k9i_A            3 LGLEAQAVPYYEKAIASGLQGKD-----------LAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVL   71 (117)
T ss_dssp             ----CCCHHHHHHHHSSCCCHHH-----------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             CCcHHHHHHHHHHHHHcCCCCcc-----------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHH
Confidence            45666666666666553211111           3455666666666666666666666665433344455566666666


Q ss_pred             HhcCCHHHHHHHHHHHhh
Q 036107          223 CKTRKSDYAQKAMKEMFQ  240 (441)
Q Consensus       223 ~~~~~~~~a~~~~~~m~~  240 (441)
                      .+.|++++|...|++...
T Consensus        72 ~~~g~~~~A~~~~~~al~   89 (117)
T 3k9i_A           72 YNLGRYEQGVELLLKIIA   89 (117)
T ss_dssp             HHHTCHHHHHHHHHHHHH
T ss_pred             HHcCCHHHHHHHHHHHHH
Confidence            666666666666666554

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=97.39  E-value=0.0013  Score=63.37  Aligned_cols=131  Identities=11%  Similarity=0.041  Sum_probs=86.2

Q ss_pred             HHHcCCChhHHHHHHHHHHHhcCCCccHHHHHHHHhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHhh----h----CCCC
Q 036107          139 ALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFK----D----CISL  210 (441)
Q Consensus       139 ~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~----~----~~~~  210 (441)
                      .+...|++++|..++++..+...........      ....+++.|...|...|++++|+.++++.-    .    ..+-
T Consensus       318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp------~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~  391 (490)
T 3n71_A          318 KARSEGLYHEVVKLCRECLEKQEPVFADTNL------YVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQ  391 (490)
T ss_dssp             HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSH------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHH
T ss_pred             HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCH------HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHH
Confidence            4567899999999999877643221110000      035788899999999999999999887651    1    2223


Q ss_pred             cHHHHHHHHHHHHhcCCHHHHHHHHHHHhh-----CCCC-CC-HhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 036107          211 SSQIFDVLIHGWCKTRKSDYAQKAMKEMFQ-----HGFS-PD-GVSYTCFIEHYCREKDFRKVDYTLKEMQE  275 (441)
Q Consensus       211 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~-----~g~~-p~-~~~~~~li~~~~~~g~~~~a~~l~~~m~~  275 (441)
                      ...+++.|-..|...|++++|+.++++...     .|-. |+ ..+.+.+-.++...+.+++|+.+|..+++
T Consensus       392 ~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~  463 (490)
T 3n71_A          392 LGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE  463 (490)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            445677788888888888888887776653     1211 22 23444555566667777777777777765

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=97.37  E-value=0.0022  Score=61.45  Aligned_cols=132  Identities=14%  Similarity=0.057  Sum_probs=99.3

Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCc---------------HHHHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 036107          177 DTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLS---------------SQIFDVLIHGWCKTRKSDYAQKAMKEMFQH  241 (441)
Q Consensus       177 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~---------------~~~~~~li~~~~~~~~~~~a~~~~~~m~~~  241 (441)
                      ....+..+-..+.+.|++++|...|++.-...+.+               ...|..+-.+|.+.|++++|+..|++..+.
T Consensus       267 ~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~  346 (457)
T 1kt0_A          267 QAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGL  346 (457)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence            45677888889999999999999998873322222               577888889999999999999999998874


Q ss_pred             CCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHH-HHHHHHhh
Q 036107          242 GFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEAL-KVYEKMKS  310 (441)
Q Consensus       242 g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~-~~~~~m~~  310 (441)
                      . +.+...|..+-.+|...|++++|...|++..+... -+...+..+-.++.+.++.+++. .++..|..
T Consensus       347 ~-p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P-~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~f~  414 (457)
T 1kt0_A          347 D-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNP-QNKAARLQISMCQKKAKEHNERDRRIYANMFK  414 (457)
T ss_dssp             S-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred             C-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            3 23577888888899999999999999999877532 24567777888888888887765 34555543

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=97.36  E-value=0.0035  Score=60.06  Aligned_cols=144  Identities=11%  Similarity=-0.054  Sum_probs=106.2

Q ss_pred             HHHHHHHHHHHHcCCChhHHHHHHHHHHHhcCCCccH-HHHHHHHhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCC
Q 036107          130 PETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSL-AAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCI  208 (441)
Q Consensus       130 ~~~y~~li~~~~~~~~~~~a~~l~~~m~~~~~~~~~~-~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~  208 (441)
                      ...|..+-..+.+.|++++|...|++..+..+..+.. ..............|..+-.++.+.|++++|+..|++.-...
T Consensus       268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~  347 (457)
T 1kt0_A          268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD  347 (457)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence            4578888899999999999999999988855332100 000000000115788889999999999999999999985544


Q ss_pred             CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC-CHhhHHHHHHHHHhcCCHHHHHH-HHHHHHH
Q 036107          209 SLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSP-DGVSYTCFIEHYCREKDFRKVDY-TLKEMQE  275 (441)
Q Consensus       209 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~a~~-l~~~m~~  275 (441)
                      +.+...|..+-.+|.+.|++++|...|++..+.  .| +...+..+-..+.+.++.+++.+ +++.|..
T Consensus       348 p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l--~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~f~  414 (457)
T 1kt0_A          348 SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV--NPQNKAARLQISMCQKKAKEHNERDRRIYANMFK  414 (457)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--C----CHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred             CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            567888999999999999999999999999875  34 45678888888888888887764 5555543

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=97.34  E-value=0.0014  Score=63.13  Aligned_cols=125  Identities=9%  Similarity=0.004  Sum_probs=95.4

Q ss_pred             HHHHhcCCHHHHHHHHHHh----hhC----CCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC-----C-CCCC-HhhH
Q 036107          186 DTLVKRNSVAHAYKVFLKF----KDC----ISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQH-----G-FSPD-GVSY  250 (441)
Q Consensus       186 ~~~~~~g~~~~a~~~~~~~----~~~----~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-----g-~~p~-~~~~  250 (441)
                      ..+...|++++|+.++++.    ..-    .+....+++.|...|...|++++|..++++....     | --|+ ..++
T Consensus       317 ~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l  396 (490)
T 3n71_A          317 DKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAV  396 (490)
T ss_dssp             HHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHH
T ss_pred             HHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHH
Confidence            3456789999999999775    121    2235567999999999999999999999887641     2 1233 4679


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHH-----cCC-CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 036107          251 TCFIEHYCREKDFRKVDYTLKEMQE-----KGC-KPS-VITCTIVMHALEKAKQIYEALKVYEKMKS  310 (441)
Q Consensus       251 ~~li~~~~~~g~~~~a~~l~~~m~~-----~g~-~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~m~~  310 (441)
                      +.|-..|...|++++|+.++++..+     .|. .|+ ..+.+.+-.++...+.+.+|+.+|..+.+
T Consensus       397 ~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~  463 (490)
T 3n71_A          397 MRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE  463 (490)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999998653     232 122 34556677888899999999999999876

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=97.32  E-value=0.0039  Score=57.82  Aligned_cols=123  Identities=13%  Similarity=0.017  Sum_probs=91.7

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHhhh----------------CCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCC
Q 036107          179 RAMSVLMDTLVKRNSVAHAYKVFLKFKD----------------CISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHG  242 (441)
Q Consensus       179 ~~~~~li~~~~~~g~~~~a~~~~~~~~~----------------~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g  242 (441)
                      ..+..+-..+.+.|++++|++.|++.-.                ..+.+...|..+-.+|.+.|++++|.+.+++..+..
T Consensus       224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~  303 (370)
T 1ihg_A          224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEID  303 (370)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhC
Confidence            4566677788899999999999987632                222345677888888888999999999998888743


Q ss_pred             CCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 036107          243 FSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALK  303 (441)
Q Consensus       243 ~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~  303 (441)
                       +-+...|..+-.+|...|++++|.+.|++..+..- -+...+..+-..+.+.++.+++.+
T Consensus       304 -p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P-~~~~~~~~l~~~~~~~~~~~~a~k  362 (370)
T 1ihg_A          304 -PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAP-EDKAIQAELLKVKQKIKAQKDKEK  362 (370)
T ss_dssp             -TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             -chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHHHHHH
Confidence             22567788888888899999999999988877532 256666777777777776666543

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=97.31  E-value=0.0047  Score=49.44  Aligned_cols=110  Identities=8%  Similarity=-0.016  Sum_probs=66.6

Q ss_pred             HHHHHHHHHHHHcCCChhHHHHHHHHHHHhcC-----CCccHHHHHHHHhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 036107          130 PETYNAMVEALGKSKKFGLMWELVKEIDELSN-----GYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKF  204 (441)
Q Consensus       130 ~~~y~~li~~~~~~~~~~~a~~l~~~m~~~~~-----~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~  204 (441)
                      ...+...-..+.+.|++++|++.|.+....-+     ..+..... ......+...|..+-.++.+.|++++|+..++..
T Consensus        11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~a   89 (162)
T 3rkv_A           11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEW-VELDRKNIPLYANMSQCYLNIGDLHEAEETSSEV   89 (162)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHH-HHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHH-HHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence            45677778888999999999999999877410     00000000 0001113455666666666667777777666665


Q ss_pred             hhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 036107          205 KDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQ  240 (441)
Q Consensus       205 ~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~  240 (441)
                      -...+.+...|..+-.+|...|++++|...|++..+
T Consensus        90 l~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~  125 (162)
T 3rkv_A           90 LKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLR  125 (162)
T ss_dssp             HHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHh
Confidence            333344555666666666666666666666666655

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=97.17  E-value=0.0065  Score=56.34  Aligned_cols=135  Identities=12%  Similarity=0.087  Sum_probs=98.9

Q ss_pred             HHHHHHHHHHHcCCChhHHHHHHHHHHHhcCCCc---cHHHHHHHHhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhC
Q 036107          131 ETYNAMVEALGKSKKFGLMWELVKEIDELSNGYV---SLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDC  207 (441)
Q Consensus       131 ~~y~~li~~~~~~~~~~~a~~l~~~m~~~~~~~~---~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~  207 (441)
                      ..|..+-..+.+.|++++|++.|++..+..+..+   ...... -....+..+|..+-.++.+.|++++|++.+++.-..
T Consensus       224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~-~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~  302 (370)
T 1ihg_A          224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGA-KLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEI  302 (370)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHG-GGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHH-HHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh
Confidence            4577888889999999999999998876210000   000000 001125678889999999999999999999998654


Q ss_pred             CCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC-CHhhHHHHHHHHHhcCCHHHHHH
Q 036107          208 ISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSP-DGVSYTCFIEHYCREKDFRKVDY  268 (441)
Q Consensus       208 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~a~~  268 (441)
                      .+.+...|..+-.+|.+.|++++|.+.|++..+.  .| +...+..+-..+...++.+++.+
T Consensus       303 ~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l--~P~~~~~~~~l~~~~~~~~~~~~a~k  362 (370)
T 1ihg_A          303 DPSNTKALYRRAQGWQGLKEYDQALADLKKAQEI--APEDKAIQAELLKVKQKIKAQKDKEK  362 (370)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            4567888999999999999999999999998874  34 45666666666766666666543

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=97.16  E-value=0.0066  Score=48.55  Aligned_cols=98  Identities=7%  Similarity=0.034  Sum_probs=63.9

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHhhhC------------------CCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 036107          178 TRAMSVLMDTLVKRNSVAHAYKVFLKFKDC------------------ISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMF  239 (441)
Q Consensus       178 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~------------------~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~  239 (441)
                      ...+...-..+.+.|++++|+..|...-..                  .+.+...|..+-.+|.+.|++++|...+++..
T Consensus        11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al   90 (162)
T 3rkv_A           11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL   90 (162)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence            345666667888899999999998775221                  12233456666667777777777777777666


Q ss_pred             hCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 036107          240 QHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEK  276 (441)
Q Consensus       240 ~~g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~  276 (441)
                      +.. +.+...|..+-.++...|++++|...|++..+.
T Consensus        91 ~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l  126 (162)
T 3rkv_A           91 KRE-ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN  126 (162)
T ss_dssp             HHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             hcC-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence            532 224556666666777777777777777766554

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=97.05  E-value=0.011  Score=47.09  Aligned_cols=100  Identities=10%  Similarity=-0.026  Sum_probs=67.2

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHhhCCCCCC-------------HhhHHHHHHHHHhcCCHHHHHHHHHHHHHc-----CC
Q 036107          217 VLIHGWCKTRKSDYAQKAMKEMFQHGFSPD-------------GVSYTCFIEHYCREKDFRKVDYTLKEMQEK-----GC  278 (441)
Q Consensus       217 ~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-------------~~~~~~li~~~~~~g~~~~a~~l~~~m~~~-----g~  278 (441)
                      ..-..+.+.|++++|...|++..+.  .|+             ...|+.+-.++.+.|++++|+..+++..+.     .+
T Consensus        16 ~~G~~l~~~g~~eeAi~~Y~kAL~l--~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~   93 (159)
T 2hr2_A           16 SDAQRQLVAGEYDEAAANCRRAMEI--SHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGEL   93 (159)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHH--HTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCT
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHhh--CCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccC
Confidence            3344455555556665555555442  222             227788888888888888888888887664     22


Q ss_pred             CCC-HHHH----HHHHHHHHhcCCHHHHHHHHHHHhh-----CCCCCCHH
Q 036107          279 KPS-VITC----TIVMHALEKAKQIYEALKVYEKMKS-----DDCLTDTS  318 (441)
Q Consensus       279 ~p~-~~~~----~~ll~~~~~~~~~~~a~~~~~~m~~-----~g~~~~~~  318 (441)
                      .|+ ...|    ...-.++...|++++|...|+...+     .|+.+...
T Consensus        94 ~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~~~  143 (159)
T 2hr2_A           94 NQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGKE  143 (159)
T ss_dssp             TSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTHH
T ss_pred             CCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHH
Confidence            454 4567    8888899999999999999998754     45555443

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=97.03  E-value=0.00089  Score=49.56  Aligned_cols=63  Identities=11%  Similarity=-0.044  Sum_probs=40.0

Q ss_pred             CHHHHHHHHHHHHcCCChhHHHHHHHHHHHhcCCCccHHHHHHHHhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHhh
Q 036107          129 TPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFK  205 (441)
Q Consensus       129 ~~~~y~~li~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~  205 (441)
                      +...|..+-..+.+.|++++|.+.|++..+..+.              +...+..+-.++.+.|++++|++.|++.-
T Consensus         3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~--------------~~~~~~~lg~~~~~~g~~~~A~~~~~~al   65 (111)
T 2l6j_A            3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQ--------------NPVGYSNKAMALIKLGEYTQAIQMCQQGL   65 (111)
T ss_dssp             HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT--------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC--------------CHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence            3455666666666777777777777766664422              45566666666666777777777666653

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=96.99  E-value=0.064  Score=52.67  Aligned_cols=173  Identities=8%  Similarity=-0.062  Sum_probs=129.8

Q ss_pred             CCChhHHHHHHHHHHHhcCCCccHHHHHHHHhhcCHHHHHHHHHHHHhcCC----------HHHHHHHHHHhhhCCCCcH
Q 036107          143 SKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNS----------VAHAYKVFLKFKDCISLSS  212 (441)
Q Consensus       143 ~~~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~----------~~~a~~~~~~~~~~~~~~~  212 (441)
                      ....++|++.++++....+.              +..+|+.--..+.+.|+          ++++++.++.+-...+-+.
T Consensus        42 ~~~~eeal~~~~~~l~~nP~--------------~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y  107 (567)
T 1dce_A           42 GELDESVLELTSQILGANPD--------------FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSY  107 (567)
T ss_dssp             TCCSHHHHHHHHHHHHHCTT--------------CHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred             CCCCHHHHHHHHHHHHHCch--------------hHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCH
Confidence            34456789999999986644              44566655555555566          8999999999866567788


Q ss_pred             HHHHHHHHHHHhcC--CHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcC-CHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 036107          213 QIFDVLIHGWCKTR--KSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREK-DFRKVDYTLKEMQEKGCKPSVITCTIVM  289 (441)
Q Consensus       213 ~~~~~li~~~~~~~--~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g-~~~~a~~l~~~m~~~g~~p~~~~~~~ll  289 (441)
                      .+|+.---.+.+.+  +++++++.++++.+... .|...|+..-..+.+.| .++++++.++++.+.... |...|+...
T Consensus       108 ~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d~-~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~-n~saW~~r~  185 (567)
T 1dce_A          108 GTWHHRCWLLSRLPEPNWARELELCARFLEADE-RNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRS  185 (567)
T ss_dssp             HHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCC-CHHHHHHHH
T ss_pred             HHHHHHHHHHHHcccccHHHHHHHHHHHHhhcc-ccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCC-CccHHHHHH
Confidence            88998888888888  77999999999998643 47788998888888888 899999999999887554 788888877


Q ss_pred             HHHHhc--------------CCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCc
Q 036107          290 HALEKA--------------KQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVR  332 (441)
Q Consensus       290 ~~~~~~--------------~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~  332 (441)
                      ..+.+.              +.++++.+.+++..... +-|...|.-.-..+.+.++
T Consensus       186 ~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~-P~~~saW~y~~~ll~~~~~  241 (567)
T 1dce_A          186 CLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGRAEP  241 (567)
T ss_dssp             HHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHC-SSCSHHHHHHHHHHSCCCC
T ss_pred             HHHHhhcccccccccccccHHHHHHHHHHHHHHHhhC-CCCccHHHHHHHHHhcCCC
Confidence            777663              55788999998887743 2345555555555544443

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=96.99  E-value=0.19  Score=45.32  Aligned_cols=235  Identities=6%  Similarity=-0.040  Sum_probs=137.8

Q ss_pred             hcCCH-HHHHHHHHHhhhCCCCcHHHHHHHHHHHHhcCC----------HHHHHHHHHHHhhCCCCCCHhhHHHHHHHHH
Q 036107          190 KRNSV-AHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRK----------SDYAQKAMKEMFQHGFSPDGVSYTCFIEHYC  258 (441)
Q Consensus       190 ~~g~~-~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~----------~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~  258 (441)
                      +.|.+ ++|+++++.+-.-.+-+..+|+.-=..+...+.          +++++.+++.+.... +-+..+|+.---.+.
T Consensus        41 ~~~e~s~eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~-PKny~aW~hR~wlL~  119 (331)
T 3dss_A           41 QAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLS  119 (331)
T ss_dssp             HTTCCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred             HcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHh
Confidence            44555 478999988855445555566653222222222          678899999988743 236778887777777


Q ss_pred             hcC--CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCccch
Q 036107          259 REK--DFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQ-IYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLI  335 (441)
Q Consensus       259 ~~g--~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~-~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~  335 (441)
                      +.|  .+++++.+++.+.+...+ |...|+.---.+...|. ++++.+.++.+.+.. +-|...|+.....+.+.+....
T Consensus       120 ~l~~~~~~~EL~~~~k~l~~dpr-Ny~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~-p~N~SAW~~R~~ll~~l~~~~~  197 (331)
T 3dss_A          120 RLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQPD  197 (331)
T ss_dssp             HCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHHSCCC-
T ss_pred             ccCcccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhhhccc
Confidence            777  489999999999987654 88888888888888888 589999999999865 3355554433333222211000


Q ss_pred             HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhc-----------CChhhHHHHHHHHHHHHHCCCC
Q 036107          336 YNTMISSACVRSEEGNALKLRQKIEEDSCKPDC-ETHARSLKMCCHK-----------KRMKDGMLVLNLMREMLSKGIV  403 (441)
Q Consensus       336 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~-~t~~~li~~~~~~-----------g~~~~a~~~~~~~~~m~~~~~~  403 (441)
                      -+.  .+-...+.++++++.+......  .|+. ..|+-+-..+.+.           +.++++.+   .+.++.+  ..
T Consensus       198 ~~~--~~~~~~~~~~eEle~~~~ai~~--~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~---~~~elle--~~  268 (331)
T 3dss_A          198 SGP--QGRLPENVLLKELELVQNAFFT--DPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELE---SCKELQE--LE  268 (331)
T ss_dssp             -------CCCHHHHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHH---HHHHHHH--HC
T ss_pred             ccc--ccccchHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHH---HHHHHHh--hC
Confidence            000  0000013467888888887754  4444 4444333333333           23444433   5555443  34


Q ss_pred             CCH-HHHHHHH---HHHHhcCCccHHHHHHHHHHHHh
Q 036107          404 PQE-STHKMLA---EELEKKSLGNAKERIDELLTHAT  436 (441)
Q Consensus       404 p~~-~~~~~ll---~~~~~~g~~~~a~~~~~~m~~~~  436 (441)
                      ||. ..+..++   .+....|..+++...++.+.+.-
T Consensus       269 pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~D  305 (331)
T 3dss_A          269 PENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVD  305 (331)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHC
T ss_pred             cccchHHHHHHHHHHhhcccccHHHHHHHHHHHHHhC
Confidence            443 2332222   22234566777777777776544

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=96.87  E-value=0.024  Score=58.26  Aligned_cols=102  Identities=10%  Similarity=0.018  Sum_probs=71.5

Q ss_pred             HHHHhcCCHHHHHH-HHHHhhhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHH
Q 036107          186 DTLVKRNSVAHAYK-VFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFR  264 (441)
Q Consensus       186 ~~~~~~g~~~~a~~-~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~  264 (441)
                      ......+++++|.+ ++..++     +......++..+.+.|..+.|+++.++-.            .-...+...|+++
T Consensus       607 ~~~~~~~~~~~a~~~~l~~i~-----~~~~~~~~~~~l~~~~~~~~a~~~~~~~~------------~~f~~~l~~~~~~  669 (814)
T 3mkq_A          607 QTLTLRGEIEEAIENVLPNVE-----GKDSLTKIARFLEGQEYYEEALNISPDQD------------QKFELALKVGQLT  669 (814)
T ss_dssp             HHHHHTTCHHHHHHHTGGGCC-----CHHHHHHHHHHHHHTTCHHHHHHHCCCHH------------HHHHHHHHHTCHH
T ss_pred             hHHHHhCCHHHHHHHHHhcCC-----chHHHHHHHHHHHhCCChHHheecCCCcc------------hheehhhhcCCHH
Confidence            34456788888877 553332     01223777888888889888887663211            1133456688999


Q ss_pred             HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 036107          265 KVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKS  310 (441)
Q Consensus       265 ~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~  310 (441)
                      +|.++.+.+      .+...|..+-..+.+.++++.|++.|..+.+
T Consensus       670 ~A~~~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~~d  709 (814)
T 3mkq_A          670 LARDLLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNAHD  709 (814)
T ss_dssp             HHHHHHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC
T ss_pred             HHHHHHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC
Confidence            998886554      3668899999999999999999999988764

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=96.80  E-value=0.0053  Score=56.16  Aligned_cols=116  Identities=9%  Similarity=-0.068  Sum_probs=75.7

Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHH
Q 036107          177 DTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEH  256 (441)
Q Consensus       177 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~  256 (441)
                      ....+..+-..+.+.|++++|...|++.-.. .|+...       +...++.+++...+   .       ...|..+-.+
T Consensus       178 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~-~p~~~~-------~~~~~~~~~~~~~l---~-------~~~~~nla~~  239 (338)
T 2if4_A          178 AADRRKMDGNSLFKEEKLEEAMQQYEMAIAY-MGDDFM-------FQLYGKYQDMALAV---K-------NPCHLNIAAC  239 (338)
T ss_dssp             HHHHHHHHHHHTCSSSCCHHHHHHHHHHHHH-SCHHHH-------HTCCHHHHHHHHHH---H-------THHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH-hccchh-------hhhcccHHHHHHHH---H-------HHHHHHHHHH
Confidence            3556666777777788888888888775321 132221       11222333332221   1       1367777788


Q ss_pred             HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 036107          257 YCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSD  311 (441)
Q Consensus       257 ~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~  311 (441)
                      +.+.|++++|...+++..+.. +-+...|..+-.+|...|++++|...|+...+.
T Consensus       240 ~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l  293 (338)
T 2if4_A          240 LIKLKRYDEAIGHCNIVLTEE-EKNPKALFRRGKAKAELGQMDSARDDFRKAQKY  293 (338)
T ss_dssp             HHTTTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-
T ss_pred             HHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            888888888888888877653 236778888888888888888888888887664

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=96.79  E-value=0.28  Score=44.25  Aligned_cols=215  Identities=8%  Similarity=0.001  Sum_probs=140.5

Q ss_pred             HHHHHHHHHHH---HcCCChh-HHHHHHHHHHHhcCCCccHHHHHHHHhhcCHHHHHHHHHHHHhcCC----------HH
Q 036107          130 PETYNAMVEAL---GKSKKFG-LMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNS----------VA  195 (441)
Q Consensus       130 ~~~y~~li~~~---~~~~~~~-~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~----------~~  195 (441)
                      ...|..++..+   .+.|.+. +|+++++.+....|..              ..+|+.--..+...+.          ++
T Consensus        26 i~~y~~~~~~~~~~~~~~e~s~eaL~~t~~~L~~nP~~--------------ytaWn~Rr~iL~~l~~~~~~~~~~~~l~   91 (331)
T 3dss_A           26 LKLYQSATQAVFQKRQAGELDESVLELTSQILGANPDF--------------ATLWNCRREVLQHLETEKSPEESAALVK   91 (331)
T ss_dssp             HHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHTTCTTC--------------HHHHHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCchh--------------HHHHHHHHHHHHHhcccccchhhhHHHH
Confidence            34455444433   3456555 7999999999865442              3333332222222222          67


Q ss_pred             HHHHHHHHhhhCCCCcHHHHHHHHHHHHhcC--CHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCC-HHHHHHHHHH
Q 036107          196 HAYKVFLKFKDCISLSSQIFDVLIHGWCKTR--KSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKD-FRKVDYTLKE  272 (441)
Q Consensus       196 ~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~--~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~-~~~a~~l~~~  272 (441)
                      +++.+++.+-...+-+..+|+.---.+.+.+  .+++++.+++.+.+.. +.|...|+----.+...|. ++++++.++.
T Consensus        92 ~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~~~  170 (331)
T 3dss_A           92 AELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDS  170 (331)
T ss_dssp             HHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHHHH
Confidence            8888888875555678888888777777777  4899999999999854 3477888888888888888 6999999999


Q ss_pred             HHHcCCCCCHHHHHHHHHHHHhc--------------CCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCccchHHH
Q 036107          273 MQEKGCKPSVITCTIVMHALEKA--------------KQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNT  338 (441)
Q Consensus       273 m~~~g~~p~~~~~~~ll~~~~~~--------------~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~~~  338 (441)
                      +.+.... |...|+.....+.+.              +.++++.+.+....... +-|...|+-+-..+.+.-.....  
T Consensus       171 ~I~~~p~-N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~-P~d~SaW~Y~r~ll~~~~~~~~~--  246 (331)
T 3dss_A          171 LITRNFS-NYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGAGSGRCEL--  246 (331)
T ss_dssp             HHHHCSC-CHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHSSSCGGGC--
T ss_pred             HHHHCCC-CHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccCcccc--
Confidence            9987654 788888776666655              45788888888887753 33555544333333322110000  


Q ss_pred             HHHHHHhcCChhHHHHHHHHHHHcCCCCCH
Q 036107          339 MISSACVRSEEGNALKLRQKIEEDSCKPDC  368 (441)
Q Consensus       339 li~~~~~~g~~~~a~~~~~~m~~~g~~p~~  368 (441)
                         .-.+.+.++++++.++++.+.  .||.
T Consensus       247 ---~~~~~~~l~~el~~~~elle~--~pd~  271 (331)
T 3dss_A          247 ---SVEKSTVLQSELESCKELQEL--EPEN  271 (331)
T ss_dssp             ---CHHHHHHHHHHHHHHHHHHHH--CTTC
T ss_pred             ---chHHHHHHHHHHHHHHHHHhh--Cccc
Confidence               001124568899999998864  5665

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=96.79  E-value=0.0089  Score=54.63  Aligned_cols=148  Identities=6%  Similarity=-0.066  Sum_probs=71.6

Q ss_pred             HHHHHHHHHHHHcCCChhHHHHHHHHHHHhcCCCccHHHHHHHHhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCC
Q 036107          130 PETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCIS  209 (441)
Q Consensus       130 ~~~y~~li~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~  209 (441)
                      ...|..+-..+.+.|++++|...|++.....+.               ..       .+...|+.+++...+        
T Consensus       179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~---------------~~-------~~~~~~~~~~~~~~l--------  228 (338)
T 2if4_A          179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGD---------------DF-------MFQLYGKYQDMALAV--------  228 (338)
T ss_dssp             HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCH---------------HH-------HHTCCHHHHHHHHHH--------
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcc---------------ch-------hhhhcccHHHHHHHH--------
Confidence            346777778888999999999999998774411               11       011222333332211        


Q ss_pred             CcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHH
Q 036107          210 LSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKP-SVITCTIV  288 (441)
Q Consensus       210 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p-~~~~~~~l  288 (441)
                       ....|..+-.+|.+.|++++|...|++..+.. +.+...|..+-.+|...|++++|...|++..+..  | +...+..+
T Consensus       229 -~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~--p~~~~a~~~L  304 (338)
T 2if4_A          229 -KNPCHLNIAACLIKLKRYDEAIGHCNIVLTEE-EKNPKALFRRGKAKAELGQMDSARDDFRKAQKYA--PDDKAIRREL  304 (338)
T ss_dssp             -HTHHHHHHHHHHHTTTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------
T ss_pred             -HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCCHHHHHHH
Confidence             11256666677777777777777777766532 1245667777777777777777777777765432  2 23333333


Q ss_pred             HHH-HHhcCCHHHHHHHHHHHhhC
Q 036107          289 MHA-LEKAKQIYEALKVYEKMKSD  311 (441)
Q Consensus       289 l~~-~~~~~~~~~a~~~~~~m~~~  311 (441)
                      ... ....+..+++..+|..|...
T Consensus       305 ~~l~~~~~~~~~~a~~~~~~~l~~  328 (338)
T 2if4_A          305 RALAEQEKALYQKQKEMYKGIFKG  328 (338)
T ss_dssp             ------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhCC
Confidence            333 22345566666777766543

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=96.73  E-value=0.013  Score=43.62  Aligned_cols=62  Identities=13%  Similarity=-0.067  Sum_probs=28.0

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 036107          178 TRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMF  239 (441)
Q Consensus       178 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~  239 (441)
                      ...+..+-..+...|++++|+..|++.-...+.+...|..+-.+|.+.|++++|...|++..
T Consensus        19 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al   80 (115)
T 2kat_A           19 MLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGL   80 (115)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            34444444444555555555555544422222333344444444444444444444444443

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=96.71  E-value=0.021  Score=39.99  Aligned_cols=59  Identities=17%  Similarity=0.149  Sum_probs=28.0

Q ss_pred             HHHHHHHHHHcCCChhHHHHHHHHHHHhcCCCccHHHHHHHHhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 036107          132 TYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKF  204 (441)
Q Consensus       132 ~y~~li~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~  204 (441)
                      .|..+-..+.+.|++++|.+.|++.....+.              +..++..+-..+.+.|++++|.+.|++.
T Consensus        11 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~--------------~~~~~~~l~~~~~~~~~~~~A~~~~~~a   69 (91)
T 1na3_A           11 AWYNLGNAYYKQGDYDEAIEYYQKALELDPN--------------NAEAWYNLGNAYYKQGDYDEAIEYYQKA   69 (91)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--------------CHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHhcCCC--------------CHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            4444444455555555555555554443211              3344444444455555555555555444

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=96.71  E-value=0.062  Score=41.62  Aligned_cols=113  Identities=14%  Similarity=0.088  Sum_probs=91.4

Q ss_pred             cCCHHHHHHHHHHhhhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHh----cCCHHHH
Q 036107          191 RNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCR----EKDFRKV  266 (441)
Q Consensus       191 ~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~a  266 (441)
                      .++.++|.+.|++.-+.-.+...    |-..|...+.+++|.++|++..+.|   +...+..|-..|..    .+++++|
T Consensus         8 ~~d~~~A~~~~~~aa~~g~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A   80 (138)
T 1klx_A            8 KKDLKKAIQYYVKACELNEMFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKA   80 (138)
T ss_dssp             HHHHHHHHHHHHHHHHTTCTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred             ccCHHHHHHHHHHHHcCCCHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHH
Confidence            35788999999887443344443    6666777788999999999998874   67778888888887    7899999


Q ss_pred             HHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHhhCCC
Q 036107          267 DYTLKEMQEKGCKPSVITCTIVMHALEK----AKQIYEALKVYEKMKSDDC  313 (441)
Q Consensus       267 ~~l~~~m~~~g~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~m~~~g~  313 (441)
                      .+.|++..+.|   +...+..|-..|..    .+++++|.+.|+...+.|.
T Consensus        81 ~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~  128 (138)
T 1klx_A           81 AQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS  128 (138)
T ss_dssp             HHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence            99999998875   56778888888888    8999999999999998874

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=96.69  E-value=0.0058  Score=44.92  Aligned_cols=61  Identities=7%  Similarity=-0.040  Sum_probs=27.4

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 036107          214 IFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQE  275 (441)
Q Consensus       214 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~  275 (441)
                      .+..+-..+.+.|++++|.+.|++..+.. +.+...|..+-.++.+.|++++|.+.+++..+
T Consensus         6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~   66 (111)
T 2l6j_A            6 KQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLR   66 (111)
T ss_dssp             HHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence            34444444444444555544444444321 11334444444444455555555555544443

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=96.64  E-value=0.048  Score=42.30  Aligned_cols=112  Identities=11%  Similarity=-0.037  Sum_probs=90.1

Q ss_pred             CChhHHHHHHHHHHHhcCCCccHHHHHHHHhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcHHHHHHHHHHHH
Q 036107          144 KKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWC  223 (441)
Q Consensus       144 ~~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~  223 (441)
                      +++++|.+.|++..+.+                ++...  |-..|...+.+++|.+.|++.-+.  -+...+..|-..|.
T Consensus         9 ~d~~~A~~~~~~aa~~g----------------~~~a~--lg~~y~~g~~~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~   68 (138)
T 1klx_A            9 KDLKKAIQYYVKACELN----------------EMFGC--LSLVSNSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYE   68 (138)
T ss_dssp             HHHHHHHHHHHHHHHTT----------------CTTHH--HHHHTCTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHcCC----------------CHhhh--HHHHHHcCCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHH
Confidence            46788999999988866                33444  666667778889999999887432  45666788888888


Q ss_pred             h----cCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHh----cCCHHHHHHHHHHHHHcCC
Q 036107          224 K----TRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCR----EKDFRKVDYTLKEMQEKGC  278 (441)
Q Consensus       224 ~----~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~a~~l~~~m~~~g~  278 (441)
                      .    .+++++|.++|++..+.|   +...+..|-..|..    .+++++|...|++..+.|.
T Consensus        69 ~G~g~~~d~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~  128 (138)
T 1klx_A           69 NGKYVKKDLRKAAQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS  128 (138)
T ss_dssp             HCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred             cCCCCCccHHHHHHHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence            7    889999999999999875   67778888888888    8899999999999988764

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=96.63  E-value=0.035  Score=44.10  Aligned_cols=72  Identities=13%  Similarity=-0.036  Sum_probs=44.2

Q ss_pred             HHHHHHHHHHHcCCChhHHHHHHHHHHHhcCCCccHHHHHHHHhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 036107          131 ETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKF  204 (441)
Q Consensus       131 ~~y~~li~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~  204 (441)
                      ..+...-..+.+.|++++|++.|++..+..+..+....+.  ....+...|..+-.++.+.|++++|+..+++.
T Consensus        12 ~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~--~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kA   83 (159)
T 2hr2_A           12 YLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFD--HAGFDAFCHAGLAEALAGLRSFDEALHSADKA   83 (159)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCC--HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhh--hccchHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            4455666778889999999999999988775533210000  00002236666666666666666666666554

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=96.61  E-value=0.011  Score=43.93  Aligned_cols=78  Identities=6%  Similarity=-0.054  Sum_probs=47.5

Q ss_pred             HHHHHHHhhhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 036107          197 AYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQE  275 (441)
Q Consensus       197 a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~  275 (441)
                      |++.|+..-...+.+...+..+-..|...|++++|...|++..+.. +.+...|..+-.++...|++++|...|++..+
T Consensus         4 a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~   81 (115)
T 2kat_A            4 ITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWESGLA   81 (115)
T ss_dssp             HHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            4455555433334455666666667777777777777777666532 12345666666667777777777777766554

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=96.56  E-value=0.15  Score=49.98  Aligned_cols=188  Identities=6%  Similarity=-0.085  Sum_probs=124.8

Q ss_pred             cCCHHHHHHHHHHhhhCCCCcHHHHHHHHHHHHhcCC----------HHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhc
Q 036107          191 RNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRK----------SDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCRE  260 (441)
Q Consensus       191 ~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~----------~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~  260 (441)
                      ...-++|++.++.+-...+-+..+|+.-=..+.+.|+          ++++++.++++.+... -+..+|+.--..+.+.
T Consensus        42 ~~~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~p-K~y~aW~hR~w~l~~l  120 (567)
T 1dce_A           42 GELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNP-KSYGTWHHRCWLLSRL  120 (567)
T ss_dssp             TCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTC
T ss_pred             CCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHc
Confidence            3445688999988854445566677765555555555          8999999999987542 3677888888888889


Q ss_pred             C--CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCccchHH
Q 036107          261 K--DFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAK-QIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYN  337 (441)
Q Consensus       261 g--~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~-~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~~  337 (441)
                      |  +++++++.++++.+...+ |...|+.---.+.+.| .++++.+.++++.+... -|...|+..-..+.+.+....-.
T Consensus       121 ~~~~~~~el~~~~k~l~~d~~-N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p-~n~saW~~r~~ll~~l~~~~~~~  198 (567)
T 1dce_A          121 PEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNF-SNYSSWHYRSCLLPQLHPQPDSG  198 (567)
T ss_dssp             SSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTC-CCHHHHHHHHHHHHHHSCCCCSS
T ss_pred             ccccHHHHHHHHHHHHhhccc-cccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCC-CCccHHHHHHHHHHhhccccccc
Confidence            9  779999999999998655 8899998888888889 89999999999988653 34555433333322211100000


Q ss_pred             HHHHHHHhcCChhHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCChh
Q 036107          338 TMISSACVRSEEGNALKLRQKIEEDSCKP-DCETHARSLKMCCHKKRMK  385 (441)
Q Consensus       338 ~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~t~~~li~~~~~~g~~~  385 (441)
                      .  .+-...+.++++++.+++....  .| |...|.-.-..+.+.++.+
T Consensus       199 ~--~~~~~~~~~~eel~~~~~ai~~--~P~~~saW~y~~~ll~~~~~~~  243 (567)
T 1dce_A          199 P--QGRLPENVLLKELELVQNAFFT--DPNDQSAWFYHRWLLGRAEPHD  243 (567)
T ss_dssp             S--CCSSCHHHHHHHHHHHHHHHHH--CSSCSHHHHHHHHHHSCCCCCS
T ss_pred             c--cccccHHHHHHHHHHHHHHHhh--CCCCccHHHHHHHHHhcCCCcc
Confidence            0  0000114568888888887754  34 4455655555555555533

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=96.50  E-value=0.2  Score=51.32  Aligned_cols=45  Identities=11%  Similarity=0.017  Sum_probs=21.2

Q ss_pred             HhcCCHHHHHHHHHHhhhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 036107          189 VKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEM  238 (441)
Q Consensus       189 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m  238 (441)
                      ...|++++|+++...+     .+...|..+-..+.+.++++.|.+.|..+
T Consensus       663 l~~~~~~~A~~~~~~~-----~~~~~W~~la~~al~~~~~~~A~~~y~~~  707 (814)
T 3mkq_A          663 LKVGQLTLARDLLTDE-----SAEMKWRALGDASLQRFNFKLAIEAFTNA  707 (814)
T ss_dssp             HHHTCHHHHHHHHTTC-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             hhcCCHHHHHHHHHhh-----CcHhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence            3345555555444333     12334555555555555555555555544

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=96.46  E-value=0.029  Score=39.24  Aligned_cols=62  Identities=11%  Similarity=0.125  Sum_probs=30.2

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 036107          214 IFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEK  276 (441)
Q Consensus       214 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~  276 (441)
                      .+..+-..+.+.|++++|...|++..+.. +.+...+..+-..+.+.|++++|...|++..+.
T Consensus        11 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~   72 (91)
T 1na3_A           11 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL   72 (91)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence            34444444555555555555555544321 113344455555555555555555555555443

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=96.36  E-value=0.019  Score=41.61  Aligned_cols=61  Identities=11%  Similarity=0.080  Sum_probs=28.3

Q ss_pred             hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 036107          248 VSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMK  309 (441)
Q Consensus       248 ~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~  309 (441)
                      ..+..+-..+.+.|++++|...|++..+.... +...|..+-.+|.+.|++++|.+.|++..
T Consensus         8 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al   68 (100)
T 3ma5_A            8 FTRYALAQEHLKHDNASRALALFEELVETDPD-YVGTYYHLGKLYERLDRTDDAIDTYAQGI   68 (100)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            34444444444555555555555544443211 23344444455555555555555544443

>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1

Probab=96.26  E-value=0.26  Score=37.49  Aligned_cols=139  Identities=11%  Similarity=0.012  Sum_probs=90.4

Q ss_pred             cCCChhHHHHHHHHHHHhcCCCccHHHHHHHHhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcHHHHHHHHHH
Q 036107          142 KSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHG  221 (441)
Q Consensus       142 ~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~  221 (441)
                      -.|..++-.++..+.....                +..-||-+|--....-+-+-..++++.+.+-+..+          
T Consensus        19 ldG~v~qGveii~k~~~ss----------------ni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFDis----------   72 (172)
T 1wy6_A           19 LDGYIDEGVKIVLEITKSS----------------TKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLD----------   72 (172)
T ss_dssp             HTTCHHHHHHHHHHHHHHS----------------CHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGG----------
T ss_pred             HhhhHHHHHHHHHHHcCCC----------------CccccceeeeecchhhchhHHHHHHHHHhhhcCcH----------
Confidence            4577777777777777655                45555555555555566666666666554432222          


Q ss_pred             HHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 036107          222 WCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEA  301 (441)
Q Consensus       222 ~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a  301 (441)
                        ++|++..+..-+-.+-     .+....+..++.....|+-|+-.+++.++.. +.+|++.....+-.||.+.|+..++
T Consensus        73 --~C~NlKrVi~C~~~~n-----~~se~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a  144 (172)
T 1wy6_A           73 --KCQNLKSVVECGVINN-----TLNEHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDA  144 (172)
T ss_dssp             --GCSCTHHHHHHHHHTT-----CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHH
T ss_pred             --hhhcHHHHHHHHHHhc-----chHHHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhH
Confidence              2455555555544442     2445566677777788888888888888644 3456777778888888888888888


Q ss_pred             HHHHHHHhhCCCC
Q 036107          302 LKVYEKMKSDDCL  314 (441)
Q Consensus       302 ~~~~~~m~~~g~~  314 (441)
                      .+++.+.-++|++
T Consensus       145 ~eLl~~AC~kG~k  157 (172)
T 1wy6_A          145 TTLLIEACKKGEK  157 (172)
T ss_dssp             HHHHHHHHHTTCH
T ss_pred             HHHHHHHHHhhhH
Confidence            8888888887764

>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1

Probab=96.12  E-value=0.31  Score=37.07  Aligned_cols=134  Identities=10%  Similarity=0.036  Sum_probs=83.5

Q ss_pred             cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHH---HHHHHHHHHHhcCcc-ch
Q 036107          260 EKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTS---FYSSLIFILSKAVRF-LI  335 (441)
Q Consensus       260 ~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~---~~~~li~~~~~~g~~-~~  335 (441)
                      .|..++..++..+....   .+..-||.+|--....-+-+-..++++..-+   -.|..   -...++..|.+.+.. ..
T Consensus        20 dG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGk---iFDis~C~NlKrVi~C~~~~n~~se~   93 (172)
T 1wy6_A           20 DGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGS---YFDLDKCQNLKSVVECGVINNTLNEH   93 (172)
T ss_dssp             TTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGG---GSCGGGCSCTHHHHHHHHHTTCCCHH
T ss_pred             hhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhh---hcCcHhhhcHHHHHHHHHHhcchHHH
Confidence            45566666666665543   2344455555444444444444444333322   11211   123445555555554 34


Q ss_pred             HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCC
Q 036107          336 YNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIV  403 (441)
Q Consensus       336 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~~~~m~~~~~~  403 (441)
                      .+..+......|+-++-.+++..+.. .-+|+....-.+-.||.+.|+..++.+   ++.+..++|++
T Consensus        94 vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~e---Ll~~AC~kG~k  157 (172)
T 1wy6_A           94 VNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATT---LLIEACKKGEK  157 (172)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHH---HHHHHHHTTCH
T ss_pred             HHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHH---HHHHHHHhhhH
Confidence            67778888889999999999988643 347888888899999999999999876   78888888875

>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}

Probab=96.06  E-value=0.29  Score=39.38  Aligned_cols=130  Identities=11%  Similarity=0.093  Sum_probs=86.3

Q ss_pred             HHHHHcCCChhHHHHHHHHHHHhcCCCccHHHHHHHHhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcHHHHH
Q 036107          137 VEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFD  216 (441)
Q Consensus       137 i~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~  216 (441)
                      .....+.|+++.|.++.+++   .                +...|..|-....+.|+++-|++.|...++        +.
T Consensus        12 F~LAL~lg~l~~A~e~a~~l---~----------------~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D--------~~   64 (177)
T 3mkq_B           12 FDLALEYGNLDAALDEAKKL---N----------------DSITWERLIQEALAQGNASLAEMIYQTQHS--------FD   64 (177)
T ss_dssp             HHHHHHTTCHHHHHHHHHHH---C----------------CHHHHHHHHHHHHHTTCHHHHHHHHHHTTC--------HH
T ss_pred             HHHHHhcCCHHHHHHHHHHh---C----------------CHHHHHHHHHHHHHcCChHHHHHHHHHhCC--------HH
Confidence            34455678888888887654   3                667888888888888888888888888875        67


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 036107          217 VLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAK  296 (441)
Q Consensus       217 ~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~  296 (441)
                      .+.--|.-.|+.+...++-+.-...|      -++.....+...|+++++.++|.+.   |..|....+      ....|
T Consensus        65 ~L~~Ly~~tg~~e~L~kla~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~~---~r~~eA~~~------A~t~g  129 (177)
T 3mkq_B           65 KLSFLYLVTGDVNKLSKMQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAEG---GSLPLAYAV------AKANG  129 (177)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHHT---TCHHHHHHH------HHHTT
T ss_pred             HHHHHHHHhCCHHHHHHHHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHHC---CChHHHHHH------HHHcC
Confidence            77777777788777666655444433      2555566666778888888887553   222322221      12246


Q ss_pred             CHHHHHHHHHHH
Q 036107          297 QIYEALKVYEKM  308 (441)
Q Consensus       297 ~~~~a~~~~~~m  308 (441)
                      ..+.|.++.+++
T Consensus       130 ~~~~a~~~~~~~  141 (177)
T 3mkq_B          130 DEAAASAFLEQA  141 (177)
T ss_dssp             CHHHHHHHHHHT
T ss_pred             cHHHHHHHHHHh
Confidence            666777776665

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=96.02  E-value=0.037  Score=40.02  Aligned_cols=61  Identities=11%  Similarity=0.057  Sum_probs=28.1

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 036107          178 TRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEM  238 (441)
Q Consensus       178 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m  238 (441)
                      ...+..+-..+.+.|++++|+..|++.-...+.+...|..+-.+|.+.|++++|.+.|++.
T Consensus         7 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~a   67 (100)
T 3ma5_A            7 PFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQG   67 (100)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            3444444444555555555555554442222223334444444455555555555544443

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=95.92  E-value=0.02  Score=45.45  Aligned_cols=99  Identities=11%  Similarity=0.056  Sum_probs=67.5

Q ss_pred             HcCCChhHHHHHHHHHHHhcCCCccHHHHHHHHhhcCHHHHHHHHHHHHhcCCH----------HHHHHHHHHhhhCCCC
Q 036107          141 GKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSV----------AHAYKVFLKFKDCISL  210 (441)
Q Consensus       141 ~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~----------~~a~~~~~~~~~~~~~  210 (441)
                      .+.+++++|.+.++...+..+.              +...|..+-.++...+++          ++|+..|++.-.-.+-
T Consensus        13 ~r~~~feeA~~~~~~Ai~l~P~--------------~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~   78 (158)
T 1zu2_A           13 DRILLFEQIRQDAENTYKSNPL--------------DADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPK   78 (158)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCTT--------------CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred             HHHhHHHHHHHHHHHHHHHCCC--------------CHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcC
Confidence            3446788999999998886633              677888777788777664          5777777776443344


Q ss_pred             cHHHHHHHHHHHHhcC-----------CHHHHHHHHHHHhhCCCCCCHhhHHHHHH
Q 036107          211 SSQIFDVLIHGWCKTR-----------KSDYAQKAMKEMFQHGFSPDGVSYTCFIE  255 (441)
Q Consensus       211 ~~~~~~~li~~~~~~~-----------~~~~a~~~~~~m~~~g~~p~~~~~~~li~  255 (441)
                      +...|..+-.+|...|           ++++|.+.|++..+  +.|+...|..-+.
T Consensus        79 ~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~--l~P~~~~y~~al~  132 (158)
T 1zu2_A           79 KDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVD--EQPDNTHYLKSLE  132 (158)
T ss_dssp             CHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHH--hCCCCHHHHHHHH
Confidence            6667777777777654           67777777777766  3566555544433

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=95.87  E-value=0.039  Score=52.12  Aligned_cols=93  Identities=9%  Similarity=-0.035  Sum_probs=73.2

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHhhC--C-CCCC----HhhHHHHHHHHHhcCCHHHHHHHHHHHHHc-----C-CCCC-HH
Q 036107          218 LIHGWCKTRKSDYAQKAMKEMFQH--G-FSPD----GVSYTCFIEHYCREKDFRKVDYTLKEMQEK-----G-CKPS-VI  283 (441)
Q Consensus       218 li~~~~~~~~~~~a~~~~~~m~~~--g-~~p~----~~~~~~li~~~~~~g~~~~a~~l~~~m~~~-----g-~~p~-~~  283 (441)
                      .+..+.+.|++++|+.++++..+.  . +.|+    ..+++.+..+|...|++++|+.++++..+-     | -.|+ ..
T Consensus       293 ~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~  372 (429)
T 3qwp_A          293 KIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGV  372 (429)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHH
T ss_pred             HHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHH
Confidence            355667789999999999988753  1 2222    468999999999999999999999987542     2 2233 56


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 036107          284 TCTIVMHALEKAKQIYEALKVYEKMKS  310 (441)
Q Consensus       284 ~~~~ll~~~~~~~~~~~a~~~~~~m~~  310 (441)
                      +++.|-..|...|++++|+.++++..+
T Consensus       373 ~l~nLa~~~~~~g~~~eA~~~~~~Al~  399 (429)
T 3qwp_A          373 QVMKVGKLQLHQGMFPQAMKNLRLAFD  399 (429)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence            789999999999999999999988754

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=95.80  E-value=0.058  Score=50.92  Aligned_cols=87  Identities=5%  Similarity=-0.148  Sum_probs=68.2

Q ss_pred             hcCCHHHHHHHHHHHhh---CCCCCC----HhhHHHHHHHHHhcCCHHHHHHHHHHHHHc-----C-CCCC-HHHHHHHH
Q 036107          224 KTRKSDYAQKAMKEMFQ---HGFSPD----GVSYTCFIEHYCREKDFRKVDYTLKEMQEK-----G-CKPS-VITCTIVM  289 (441)
Q Consensus       224 ~~~~~~~a~~~~~~m~~---~g~~p~----~~~~~~li~~~~~~g~~~~a~~l~~~m~~~-----g-~~p~-~~~~~~ll  289 (441)
                      ..|++++|+.++++..+   .-+-|+    ..+++.|..+|...|++++|+.++++..+-     | -.|+ ..+++.|-
T Consensus       310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa  389 (433)
T 3qww_A          310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG  389 (433)
T ss_dssp             TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred             hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence            35788999999988764   212222    468999999999999999999999987542     2 2233 56799999


Q ss_pred             HHHHhcCCHHHHHHHHHHHhh
Q 036107          290 HALEKAKQIYEALKVYEKMKS  310 (441)
Q Consensus       290 ~~~~~~~~~~~a~~~~~~m~~  310 (441)
                      ..|...|++++|+.++++..+
T Consensus       390 ~~~~~qg~~~eA~~~~~~Al~  410 (433)
T 3qww_A          390 RLYMGLENKAAGEKALKKAIA  410 (433)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHhccCHHHHHHHHHHHHH
Confidence            999999999999999998754

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=95.71  E-value=0.04  Score=52.01  Aligned_cols=93  Identities=13%  Similarity=-0.004  Sum_probs=59.8

Q ss_pred             cCCChhHHHHHHHHHHHhcCCCccHHHHHHHHhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHhh----h----CCCCcHH
Q 036107          142 KSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFK----D----CISLSSQ  213 (441)
Q Consensus       142 ~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~----~----~~~~~~~  213 (441)
                      ..|++++|..++++..+...........      ....+++.|..+|...|++++|+.++++.-    .    ..+-...
T Consensus       310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp------~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~  383 (433)
T 3qww_A          310 HYKSPSELLEICELSQEKMSSVFEDSNV------YMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVAS  383 (433)
T ss_dssp             TTSCHHHHHHHHHHHHHHHTTTBCTTSH------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHH
T ss_pred             hccCHHHHHHHHHHHHHHhhCccChhch------HHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHH
Confidence            4578888998888876642111110000      034678888888888888888888887651    1    1222344


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 036107          214 IFDVLIHGWCKTRKSDYAQKAMKEMFQ  240 (441)
Q Consensus       214 ~~~~li~~~~~~~~~~~a~~~~~~m~~  240 (441)
                      +++.|-..|...|++++|+.+|++..+
T Consensus       384 ~l~nLa~~~~~qg~~~eA~~~~~~Al~  410 (433)
T 3qww_A          384 MWLKLGRLYMGLENKAAGEKALKKAIA  410 (433)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence            577777777788888887777776643

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=95.67  E-value=0.069  Score=50.40  Aligned_cols=100  Identities=10%  Similarity=-0.011  Sum_probs=68.2

Q ss_pred             HHHHHHHcCCChhHHHHHHHHHHHhcCCCccHHHHHHHHhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHhh----h----
Q 036107          135 AMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFK----D----  206 (441)
Q Consensus       135 ~li~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~----~----  206 (441)
                      ..+..+.+.|++++|.+++++..+..........      .....+++.|..+|...|++++|+.++++.-    .    
T Consensus       292 ~~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h------~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~  365 (429)
T 3qwp_A          292 KKIEELKAHWKWEQVLAMCQAIISSNSERLPDIN------IYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPG  365 (429)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTS------HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCS
T ss_pred             HHHHHHHhhccHHHHHHHHHHHHHhccCcCCccc------hHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCC
Confidence            3456677889999999999998764311111000      0035678888999999999999999887651    1    


Q ss_pred             CCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 036107          207 CISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQ  240 (441)
Q Consensus       207 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~  240 (441)
                      ..+....+++.|-..|...|++++|+.++++..+
T Consensus       366 ~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~  399 (429)
T 3qwp_A          366 SHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFD  399 (429)
T ss_dssp             SCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             CChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence            1222444577777888888888888887776653

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=95.16  E-value=0.29  Score=44.63  Aligned_cols=132  Identities=13%  Similarity=0.008  Sum_probs=66.2

Q ss_pred             CCHHHHHHHHHHHHcC-----CChhHHHHHHHHHHHhcCCCccHHHHHHHHhhcCHHHHHHHHHHHH----hcC-CHHHH
Q 036107          128 HTPETYNAMVEALGKS-----KKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLV----KRN-SVAHA  197 (441)
Q Consensus       128 p~~~~y~~li~~~~~~-----~~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~----~~g-~~~~a  197 (441)
                      .+...|...+.+....     .+..+|.++|++..+..|...              ..+..+.-++.    ..+ .....
T Consensus       192 ~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~a--------------~A~A~la~a~~~~~~~~~~~~~~~  257 (372)
T 3ly7_A          192 HRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFT--------------YARAEKALVDIVRHSQHPLDEKQL  257 (372)
T ss_dssp             SSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTTCH--------------HHHHHHHHHHHHHHHHSCCCHHHH
T ss_pred             CCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCH--------------HHHHHHHHHHHHHhccCCCchhhH
Confidence            4677888888766432     345789999999999775543              33333222222    000 00111


Q ss_pred             HH---HHHHh--hhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHH
Q 036107          198 YK---VFLKF--KDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKE  272 (441)
Q Consensus       198 ~~---~~~~~--~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~  272 (441)
                      ..   .+...  ....+.+..+|.++-..+...|++++|...+++....+  |+...|..+-..+.-.|++++|.+.|++
T Consensus       258 ~~l~~a~~a~~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~  335 (372)
T 3ly7_A          258 AALNTEIDNIVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLT  335 (372)
T ss_dssp             HHHHHHHHHHHTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence            11   11110  01223444455555444444455555555555555532  4544444444555555555555555555


Q ss_pred             HHH
Q 036107          273 MQE  275 (441)
Q Consensus       273 m~~  275 (441)
                      ...
T Consensus       336 Alr  338 (372)
T 3ly7_A          336 AFN  338 (372)
T ss_dssp             HHH
T ss_pred             HHh
Confidence            444

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=95.11  E-value=0.052  Score=43.01  Aligned_cols=98  Identities=8%  Similarity=0.004  Sum_probs=61.6

Q ss_pred             HhcCCHHHHHHHHHHhhhCCCCcHHHHHHHHHHHHhcCCH----------HHHHHHHHHHhhCCCCC-CHhhHHHHHHHH
Q 036107          189 VKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKS----------DYAQKAMKEMFQHGFSP-DGVSYTCFIEHY  257 (441)
Q Consensus       189 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~----------~~a~~~~~~m~~~g~~p-~~~~~~~li~~~  257 (441)
                      .+.+.+++|.+.++..-...+.+...|..+-.++...+++          ++|...|++..+.  .| +...|..+-.+|
T Consensus        13 ~r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~l--dP~~~~A~~~LG~ay   90 (158)
T 1zu2_A           13 DRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLI--DPKKDEAVWCIGNAY   90 (158)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred             HHHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHh--CcCcHHHHHHHHHHH
Confidence            3456777788777776444455677777776777766654          4777777777663  34 345677777777


Q ss_pred             HhcC-----------CHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 036107          258 CREK-----------DFRKVDYTLKEMQEKGCKPSVITCTIVMH  290 (441)
Q Consensus       258 ~~~g-----------~~~~a~~l~~~m~~~g~~p~~~~~~~ll~  290 (441)
                      ...|           ++++|.+.|++..+.  .|+...|...+.
T Consensus        91 ~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l--~P~~~~y~~al~  132 (158)
T 1zu2_A           91 TSFAFLTPDETEAKHNFDLATQFFQQAVDE--QPDNTHYLKSLE  132 (158)
T ss_dssp             HHHHHHCCCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred             HHhcccCcchhhhhccHHHHHHHHHHHHHh--CCCCHHHHHHHH
Confidence            6653           677777777776653  355444444433

>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}

Probab=94.85  E-value=1.2  Score=35.74  Aligned_cols=103  Identities=12%  Similarity=0.054  Sum_probs=76.5

Q ss_pred             HHHHhcCCHHHHHHHHHHhhhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHH
Q 036107          186 DTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRK  265 (441)
Q Consensus       186 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~  265 (441)
                      ....+.|+++.|.++-+.+     .+...|..|-......|+++-|.+.|.....         |..+.--|.-.|+.++
T Consensus        13 ~LAL~lg~l~~A~e~a~~l-----~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~   78 (177)
T 3mkq_B           13 DLALEYGNLDAALDEAKKL-----NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNK   78 (177)
T ss_dssp             HHHHHTTCHHHHHHHHHHH-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHH
T ss_pred             HHHHhcCCHHHHHHHHHHh-----CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHH
Confidence            4556789999999888776     3566799999999999999999999988764         4556666667788877


Q ss_pred             HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 036107          266 VDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKM  308 (441)
Q Consensus       266 a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m  308 (441)
                      ..++-+.-...|-      ++....++.-.|+++++.++|.+.
T Consensus        79 L~kla~iA~~~g~------~n~af~~~l~lGdv~~~i~lL~~~  115 (177)
T 3mkq_B           79 LSKMQNIAQTRED------FGSMLLNTFYNNSTKERSSIFAEG  115 (177)
T ss_dssp             HHHHHHHHHHTTC------HHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred             HHHHHHHHHHCcc------HHHHHHHHHHcCCHHHHHHHHHHC
Confidence            7766665555542      456666677788999988887543

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=94.48  E-value=1.6  Score=39.70  Aligned_cols=139  Identities=6%  Similarity=-0.099  Sum_probs=91.2

Q ss_pred             CHHHHHHHHHHHHh--c---CCHHHHHHHHHHhhhCCCCcHHHHHHHHHHHHh----cC-C---HHHHHHHHHHHhh-CC
Q 036107          177 DTRAMSVLMDTLVK--R---NSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCK----TR-K---SDYAQKAMKEMFQ-HG  242 (441)
Q Consensus       177 ~~~~~~~li~~~~~--~---g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~----~~-~---~~~a~~~~~~m~~-~g  242 (441)
                      +...|...+.+...  .   ....+|..+|++.-..-+-....|..+--+|.-    .+ .   .....+.++.... ..
T Consensus       193 ~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~~~  272 (372)
T 3ly7_A          193 RGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPE  272 (372)
T ss_dssp             SGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGG
T ss_pred             CHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhccc
Confidence            56777777766543  2   335788999988744333344455544333321    11 1   1111112222111 12


Q ss_pred             CCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHH
Q 036107          243 FSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSF  319 (441)
Q Consensus       243 ~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~  319 (441)
                      -+.+..+|..+-..+...|++++|...+++....+  |+...|..+-..+.-.|++++|.+.|++....  .|...+
T Consensus       273 ~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL--~P~~~t  345 (372)
T 3ly7_A          273 LNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNL--RPGANT  345 (372)
T ss_dssp             GTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCSHHH
T ss_pred             CCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCcCh
Confidence            35577888888777777899999999999999886  78888888888899999999999999988875  344444

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=94.41  E-value=0.2  Score=35.61  Aligned_cols=53  Identities=9%  Similarity=0.204  Sum_probs=24.6

Q ss_pred             HHhcCCHHHHHHHHHHhhhCCCCcHH-HHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 036107          188 LVKRNSVAHAYKVFLKFKDCISLSSQ-IFDVLIHGWCKTRKSDYAQKAMKEMFQ  240 (441)
Q Consensus       188 ~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~li~~~~~~~~~~~a~~~~~~m~~  240 (441)
                      +.+.|++++|.+.|+......+.+.. .+..+-.+|.+.|++++|.+.|++..+
T Consensus        10 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~   63 (99)
T 2kc7_A           10 LINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIE   63 (99)
T ss_dssp             HHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            34445555555555444322223333 444444445555555555555555443

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=94.41  E-value=0.13  Score=36.63  Aligned_cols=81  Identities=7%  Similarity=-0.044  Sum_probs=57.3

Q ss_pred             HHHHHcCCChhHHHHHHHHHHHhcCCCccHHHHHHHHhhcCHH-HHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcHHHH
Q 036107          137 VEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTR-AMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIF  215 (441)
Q Consensus       137 i~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~  215 (441)
                      ...+.+.|++++|.+.|++..+..+.              +.. .+..+-.++...|++++|.+.|++.-...+.+...+
T Consensus         7 a~~~~~~~~~~~A~~~~~~al~~~p~--------------~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~   72 (99)
T 2kc7_A            7 IKELINQGDIENALQALEEFLQTEPV--------------GKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQ   72 (99)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHHCSS--------------THHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHCCC--------------cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHH
Confidence            44567889999999999999886522              566 888889999999999999999998744223333333


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHh
Q 036107          216 DVLIHGWCKTRKSDYAQKAMKEMF  239 (441)
Q Consensus       216 ~~li~~~~~~~~~~~a~~~~~~m~  239 (441)
                      ..        +.+.++...|++..
T Consensus        73 ~~--------~~~~~a~~~~~~~~   88 (99)
T 2kc7_A           73 AR--------KMVMDILNFYNKDM   88 (99)
T ss_dssp             HH--------HHHHHHHHHHCCTT
T ss_pred             HH--------HHHHHHHHHHHHHh
Confidence            11        44555555555443

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=93.53  E-value=0.7  Score=36.14  Aligned_cols=82  Identities=18%  Similarity=0.047  Sum_probs=52.2

Q ss_pred             HHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcC---CHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHhcCCHHHHH
Q 036107          228 SDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREK---DFRKVDYTLKEMQEKGCKP--SVITCTIVMHALEKAKQIYEAL  302 (441)
Q Consensus       228 ~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g---~~~~a~~l~~~m~~~g~~p--~~~~~~~ll~~~~~~~~~~~a~  302 (441)
                      +..+.+-|.+....|. ++..+.-.+-.++++++   +.+++..+|++..+.. .|  +...+-.+--+|.+.|++++|.
T Consensus        14 l~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~   91 (152)
T 1pc2_A           14 LLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKAL   91 (152)
T ss_dssp             HHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred             HHHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHH
Confidence            3445555655555444 56666666666677766   5567777777776654 23  2344445555667888888888


Q ss_pred             HHHHHHhhC
Q 036107          303 KVYEKMKSD  311 (441)
Q Consensus       303 ~~~~~m~~~  311 (441)
                      +.++.+.+.
T Consensus        92 ~y~~~lL~i  100 (152)
T 1pc2_A           92 KYVRGLLQT  100 (152)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHhc
Confidence            888877774

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=93.09  E-value=1.3  Score=41.01  Aligned_cols=67  Identities=7%  Similarity=0.026  Sum_probs=35.6

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHH-----cCCCCCHHH
Q 036107          217 VLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQE-----KGCKPSVIT  284 (441)
Q Consensus       217 ~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~-----~g~~p~~~~  284 (441)
                      .++..+...|+++++...+..+... -+.+...|..+|.++.+.|+..+|++.|+...+     .|+.|+..+
T Consensus       176 ~~~~~~l~~g~~~~a~~~l~~~~~~-~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l  247 (388)
T 2ff4_A          176 AKAEAEIACGRASAVIAELEALTFE-HPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL  247 (388)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHH
Confidence            3445555556666665555555432 122445566666666666666666665555432     256655543

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=92.41  E-value=0.82  Score=33.03  Aligned_cols=24  Identities=17%  Similarity=0.158  Sum_probs=9.4

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHH
Q 036107          285 CTIVMHALEKAKQIYEALKVYEKM  308 (441)
Q Consensus       285 ~~~ll~~~~~~~~~~~a~~~~~~m  308 (441)
                      +..+..++.+.|+++.|...+++.
T Consensus        49 ~~~L~~~~~~~g~~~~A~~~~~~a   72 (104)
T 2v5f_A           49 LDYLSYAVYQQGDLDKALLLTKKL   72 (104)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHccCHHHHHHHHHHH
Confidence            333333333444444444433333

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=92.15  E-value=1.1  Score=32.23  Aligned_cols=67  Identities=10%  Similarity=-0.054  Sum_probs=56.4

Q ss_pred             CcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC------CCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 036107          210 LSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQH------GFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEK  276 (441)
Q Consensus       210 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~------g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~  276 (441)
                      .+...+-.|-..+.+.|+++.|..+|+...+.      +-.+....+..+..++.+.|++++|...+++..+.
T Consensus         3 Lsa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l   75 (104)
T 2v5f_A            3 LTAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL   75 (104)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence            56667778889999999999999999987753      11245678899999999999999999999999886

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=92.13  E-value=1.7  Score=30.69  Aligned_cols=65  Identities=6%  Similarity=-0.000  Sum_probs=37.0

Q ss_pred             CHhhHHHHHHHHHhcCC---HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 036107          246 DGVSYTCFIEHYCREKD---FRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSD  311 (441)
Q Consensus       246 ~~~~~~~li~~~~~~g~---~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~  311 (441)
                      |...+..+-.++...++   .++|..++++..+.... +......+-..+.+.|++++|...|+.+.+.
T Consensus         5 ~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~-~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~   72 (93)
T 3bee_A            5 TATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPY-NEAALSLIANDHFISFRFQEAIDTWVLLLDS   72 (93)
T ss_dssp             CHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred             CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            44455555555543333   56666666666554322 4455555556666666666666666666654

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=91.70  E-value=2.5  Score=29.77  Aligned_cols=63  Identities=14%  Similarity=0.068  Sum_probs=36.0

Q ss_pred             CHHHHHHHHHHHHcCCC---hhHHHHHHHHHHHhcCCCccHHHHHHHHhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHhh
Q 036107          129 TPETYNAMVEALGKSKK---FGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFK  205 (441)
Q Consensus       129 ~~~~y~~li~~~~~~~~---~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~  205 (441)
                      |+..+..+-.++...++   .++|..+|++..+..+.              ++.+...+-..+.+.|++++|...|+.+.
T Consensus         5 ~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~--------------~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l   70 (93)
T 3bee_A            5 TATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPY--------------NEAALSLIANDHFISFRFQEAIDTWVLLL   70 (93)
T ss_dssp             CHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTT--------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcC--------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            44444444444433322   56667777666665422              45556666666666666666666666663

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=91.28  E-value=8.9  Score=35.29  Aligned_cols=80  Identities=9%  Similarity=0.061  Sum_probs=64.3

Q ss_pred             HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHH--CCCCCCHHHHHHHH
Q 036107          336 YNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLS--KGIVPQESTHKMLA  413 (441)
Q Consensus       336 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~~~~m~~--~~~~p~~~~~~~ll  413 (441)
                      ...++..+...|+.++|+..+....... .-+...+..+|.++.+.|+..+|.+.|+.+.+...  .|+.|+..+-...-
T Consensus       174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~l~~  252 (388)
T 2ff4_A          174 HTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRALNE  252 (388)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHH
Confidence            5667788889999999999999887542 45777999999999999999999999888877653  49999988755444


Q ss_pred             HHH
Q 036107          414 EEL  416 (441)
Q Consensus       414 ~~~  416 (441)
                      ..+
T Consensus       253 ~il  255 (388)
T 2ff4_A          253 RIL  255 (388)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            433

>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A

Probab=91.04  E-value=3.1  Score=32.28  Aligned_cols=102  Identities=10%  Similarity=0.032  Sum_probs=54.0

Q ss_pred             CHHHHHHHHHHHHhcCCH------HHHHHHHHHhhhCCCCcHH-HHHHHHHHH------HhcCCHHHHHHHHHHHhhCCC
Q 036107          177 DTRAMSVLMDTLVKRNSV------AHAYKVFLKFKDCISLSSQ-IFDVLIHGW------CKTRKSDYAQKAMKEMFQHGF  243 (441)
Q Consensus       177 ~~~~~~~li~~~~~~g~~------~~a~~~~~~~~~~~~~~~~-~~~~li~~~------~~~~~~~~a~~~~~~m~~~g~  243 (441)
                      |..+|-..+...-+.|+.      ++..++|++.-..++|+.. .|...|..+      ...+++++|.++|+.+.+.+=
T Consensus        12 ~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~hK   91 (161)
T 4h7y_A           12 NPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARANCK   91 (161)
T ss_dssp             SHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHHCT
T ss_pred             CHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhH
Confidence            677777777777777887      7777788776555566531 111111111      122455556666655543211


Q ss_pred             CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 036107          244 SPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCK  279 (441)
Q Consensus       244 ~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~  279 (441)
                      .- ...|...-.-=.+.|++.+|.+++..-...+.+
T Consensus        92 kF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k  126 (161)
T 4h7y_A           92 KF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAV  126 (161)
T ss_dssp             TB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB
T ss_pred             HH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCC
Confidence            11 333333333334555566666666555555444

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=90.85  E-value=1.2  Score=34.85  Aligned_cols=82  Identities=13%  Similarity=0.056  Sum_probs=60.0

Q ss_pred             HHHHHHHHHHhhhCCCCcHHHHHHHHHHHHhcC---CHHHHHHHHHHHhhCCCCC--CHhhHHHHHHHHHhcCCHHHHHH
Q 036107          194 VAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTR---KSDYAQKAMKEMFQHGFSP--DGVSYTCFIEHYCREKDFRKVDY  268 (441)
Q Consensus       194 ~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~---~~~~a~~~~~~m~~~g~~p--~~~~~~~li~~~~~~g~~~~a~~  268 (441)
                      ...+.+-|.+....-.++..+.-.+--++++++   +++++..+|++..+.. .|  +...+-.+--+|.+.|++++|.+
T Consensus        14 l~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~~   92 (152)
T 1pc2_A           14 LLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKALK   92 (152)
T ss_dssp             HHHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred             HHHHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHHH
Confidence            445555565543333478888888888899988   6779999999998864 24  23445555567799999999999


Q ss_pred             HHHHHHHc
Q 036107          269 TLKEMQEK  276 (441)
Q Consensus       269 l~~~m~~~  276 (441)
                      .++.+.+.
T Consensus        93 y~~~lL~i  100 (152)
T 1pc2_A           93 YVRGLLQT  100 (152)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHhc
Confidence            99999875

>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}

Probab=90.79  E-value=20  Score=38.39  Aligned_cols=224  Identities=8%  Similarity=0.011  Sum_probs=129.4

Q ss_pred             HHHHHHhcCCHHHHHHHHHHhhhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC------------------
Q 036107          184 LMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSP------------------  245 (441)
Q Consensus       184 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p------------------  245 (441)
                      ++..+.+.+..+.+.++....+.    +...-=.+-.+|...|++++|.+.|.+... |+..                  
T Consensus       818 l~~~l~~~~~~~~~~~l~~~~~~----~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~-~~~~~~~l~~~~~~~~~~~~~~  892 (1139)
T 4fhn_B          818 LVEKLFLFKQYNACMQLIGWLNS----DPIAVYLKALIYLKSKEAVKAVRCFKTTSL-VLYSHTSQFAVLREFQEIAEKY  892 (1139)
T ss_dssp             HHHHHHHHSCTTHHHHHHHHSCC----CHHHHHHHHHHHHHTTCHHHHHHHHHTCCC-SCTTCCCSCSSHHHHHHHHHTT
T ss_pred             HHHHHHHhhhHHHHHHHhhhccC----CcHHHHHHHHHHHhcCCHHHHHHHHHHHhh-hhcccchhhhhhcccccccccc
Confidence            44455556666655554444322    222212223455566666666666655321 1110                  


Q ss_pred             -----CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-C-CC--HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC
Q 036107          246 -----DGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGC-K-PS--VITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTD  316 (441)
Q Consensus       246 -----~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~-~-p~--~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~  316 (441)
                           -..=|..++.-+-+.+.++.+.++-+...+... . ++  ...|..+++++...|++++|...+-.+.....+  
T Consensus       893 ~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~r--  970 (1139)
T 4fhn_B          893 HHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPLK--  970 (1139)
T ss_dssp             TSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSSC--
T ss_pred             cccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHHH--
Confidence                 112367778888888888888887776554322 1 11  125889999999999999999999888876544  


Q ss_pred             HHHHHHHHHHHHhcCccchHHHHHHHHHhcCChhHHHHHHHHHHHcC--CCCCHHHHHHHHHHH-HhcCChhhHHH-HHH
Q 036107          317 TSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDS--CKPDCETHARSLKMC-CHKKRMKDGML-VLN  392 (441)
Q Consensus       317 ~~~~~~li~~~~~~g~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g--~~p~~~t~~~li~~~-~~~g~~~~a~~-~~~  392 (441)
                      ......++..+|..|.   ...|+ .+--.|..+++.+++...-+.-  +... ..|..++.++ ...|++..|-. +++
T Consensus       971 ~~cLr~LV~~lce~~~---~~~L~-~lpf~gl~~~Vd~IL~~kAr~~~~~~~~-p~Yy~iLYs~ri~r~dyR~AA~vmYe 1045 (1139)
T 4fhn_B          971 KSCLLDFVNQLTKQGK---INQLL-NYSMPTLRQDVDNLLERKAFQMINVESQ-PCWYNILFSWRYKHQNYRDAAAIIYE 1045 (1139)
T ss_dssp             HHHHHHHHHHHHHHCC---HHHHH-HHTTTSCHHHHHHHHHHHHHHHHHHCCS-THHHHHHHHHHHHHHTTSCHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCC---hhhhh-CCCCccHHHHHHHHHHHHHHhCCccccC-CCHHHHhHhhhhccCChHHHHHHHHH
Confidence            4566778888888777   34444 3445677778888876543211  1111 1244445444 46677766544 444


Q ss_pred             HHHHHHHCCCCCC-------HHHHHHHHHHHHhc
Q 036107          393 LMREMLSKGIVPQ-------ESTHKMLAEELEKK  419 (441)
Q Consensus       393 ~~~~m~~~~~~p~-------~~~~~~ll~~~~~~  419 (441)
                      ...++...+-.+.       ...|.++|+++.-.
T Consensus      1046 ~~~RL~~~~~~~~~~~~~~q~~~yL~~INaLslv 1079 (1139)
T 4fhn_B         1046 KLSRYISTTELIGKKERTFIIEHYLIVLNTLELL 1079 (1139)
T ss_dssp             HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHS
T ss_pred             HHHHhhhccccccchhHHHHHHHHHHHHHHHhcC
Confidence            4444433211122       34677777776544

>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A

Probab=89.34  E-value=4.5  Score=31.42  Aligned_cols=105  Identities=7%  Similarity=-0.018  Sum_probs=74.6

Q ss_pred             CcHHHHHHHHHHHHhcCCH------HHHHHHHHHHhhCCCCCCHh----hHHHHHHH---HHhcCCHHHHHHHHHHHHHc
Q 036107          210 LSSQIFDVLIHGWCKTRKS------DYAQKAMKEMFQHGFSPDGV----SYTCFIEH---YCREKDFRKVDYTLKEMQEK  276 (441)
Q Consensus       210 ~~~~~~~~li~~~~~~~~~------~~a~~~~~~m~~~g~~p~~~----~~~~li~~---~~~~g~~~~a~~l~~~m~~~  276 (441)
                      -|..+|=..+...-+.|+.      ++..++|++.... ++|+..    .|.-|---   +...++.++|.++|+.+.+.
T Consensus        11 ~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~   89 (161)
T 4h7y_A           11 NNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARAN   89 (161)
T ss_dssp             CSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence            3555677777777777887      7888888877653 555532    11111111   12347899999999999877


Q ss_pred             CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC
Q 036107          277 GCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTD  316 (441)
Q Consensus       277 g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~  316 (441)
                      +-+. ...|..-.+-=.+.|++..|.+++......+.+|.
T Consensus        90 hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~  128 (161)
T 4h7y_A           90 CKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPL  128 (161)
T ss_dssp             CTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCH
T ss_pred             hHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcH
Confidence            5554 77777777777889999999999999999887773

>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}

Probab=87.23  E-value=34  Score=36.52  Aligned_cols=201  Identities=11%  Similarity=0.000  Sum_probs=113.9

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHH----cCC---------------
Q 036107          218 LIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQE----KGC---------------  278 (441)
Q Consensus       218 li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~----~g~---------------  278 (441)
                      ++..+.+.+..+.+.++..-..     .+...--.+-.++...|++++|...|++.-.    .+.               
T Consensus       818 l~~~l~~~~~~~~~~~l~~~~~-----~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~  892 (1139)
T 4fhn_B          818 LVEKLFLFKQYNACMQLIGWLN-----SDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKY  892 (1139)
T ss_dssp             HHHHHHHHSCTTHHHHHHHHSC-----CCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTT
T ss_pred             HHHHHHHhhhHHHHHHHhhhcc-----CCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccc
Confidence            4444555555555555443332     2333333444567788999999999976421    000               


Q ss_pred             ---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCccchHHHHHHHHHhcCChhHHHHH
Q 036107          279 ---KPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKL  355 (441)
Q Consensus       279 ---~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~~~li~~~~~~g~~~~a~~~  355 (441)
                         ..-..-|..++..+.+.+.++.+.++-....+..-.-+...-.            ..|..+.+++...|++++|...
T Consensus       893 ~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~------------~l~~~iFk~~L~l~~ye~Ay~a  960 (1139)
T 4fhn_B          893 HHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSI------------AITHETLKTACAAGKFDAAHVA  960 (1139)
T ss_dssp             TSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHH------------HHHHHHHHHHHHHCCSGGGGHH
T ss_pred             cccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHH------------HHHHHHHHHHHhhCCHHHHHHH
Confidence               0112346777778888888888887776655432111211000            2388888999999999999999


Q ss_pred             HHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHH-----HHHHHHHH----H-C-CCCCCHHHHHHHHHHHHhcCCccH
Q 036107          356 RQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLV-----LNLMREML----S-K-GIVPQESTHKMLAEELEKKSLGNA  424 (441)
Q Consensus       356 ~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~-----~~~~~~m~----~-~-~~~p~~~~~~~ll~~~~~~g~~~~  424 (441)
                      +-.+.....+  ...+..|+..+|..|..+.-..+     .+.+++..    . . .......-|..|-.-....|++..
T Consensus       961 L~~~pd~~~r--~~cLr~LV~~lce~~~~~~L~~lpf~gl~~~Vd~IL~~kAr~~~~~~~~p~Yy~iLYs~ri~r~dyR~ 1038 (1139)
T 4fhn_B          961 LMVLSTTPLK--KSCLLDFVNQLTKQGKINQLLNYSMPTLRQDVDNLLERKAFQMINVESQPCWYNILFSWRYKHQNYRD 1038 (1139)
T ss_dssp             HHHHHHSSSC--HHHHHHHHHHHHHHCCHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHHTTSC
T ss_pred             HHhCCCHHHH--HHHHHHHHHHHHhCCChhhhhCCCCccHHHHHHHHHHHHHHhCCccccCCCHHHHhHhhhhccCChHH
Confidence            8888765443  45577788877777665443221     11111111    1 1 112122335556555667777766


Q ss_pred             HH-HHHHHHHHHhh
Q 036107          425 KE-RIDELLTHATE  437 (441)
Q Consensus       425 a~-~~~~~m~~~~~  437 (441)
                      |- -+++...|..+
T Consensus      1039 AA~vmYe~~~RL~~ 1052 (1139)
T 4fhn_B         1039 AAAIIYEKLSRYIS 1052 (1139)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhh
Confidence            54 46777776653

>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...

Probab=87.12  E-value=2.4  Score=30.25  Aligned_cols=62  Identities=13%  Similarity=0.225  Sum_probs=39.8

Q ss_pred             HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 036107          351 NALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEEL  416 (441)
Q Consensus       351 ~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~~~~m~~~~~~p~~~~~~~ll~~~  416 (441)
                      ++.+-++.+....+.|+.....+.+++|.+.+++..|.++++.++.  +-|-  ...+|..+++-+
T Consensus        28 e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~--K~~~--~~~iY~~~lqEl   89 (109)
T 1v54_E           28 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKD--KAGP--HKEIYPYVIQEL   89 (109)
T ss_dssp             HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HTTT--CTTHHHHHHHHH
T ss_pred             HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH--HhcC--chhhHHHHHHHH
Confidence            4555555556667778888888888888888888888776665554  2222  234566666543

>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...

Probab=87.09  E-value=6.5  Score=28.07  Aligned_cols=63  Identities=16%  Similarity=0.181  Sum_probs=43.2

Q ss_pred             CHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 036107          227 KSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMH  290 (441)
Q Consensus       227 ~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~  290 (441)
                      +.-+..+-++.+....+.|++.+..+.+.+|.+.+++.-|.++|+-++..-- +...+|..+++
T Consensus        25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~-~~~~iY~~~lq   87 (109)
T 1v54_E           25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAG-PHKEIYPYVIQ   87 (109)
T ss_dssp             CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT-TCTTHHHHHHH
T ss_pred             cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc-CchhhHHHHHH
Confidence            4556677777777777778888888888888888888888888877765421 12345655553

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=85.61  E-value=18  Score=31.66  Aligned_cols=108  Identities=7%  Similarity=-0.003  Sum_probs=78.3

Q ss_pred             CcHHHHHHHHH-HHHhc--CC------HHHHHHHHHHHhhCCCCCC---HhhHHHHHHHHHh-----cCCHHHHHHHHHH
Q 036107          210 LSSQIFDVLIH-GWCKT--RK------SDYAQKAMKEMFQHGFSPD---GVSYTCFIEHYCR-----EKDFRKVDYTLKE  272 (441)
Q Consensus       210 ~~~~~~~~li~-~~~~~--~~------~~~a~~~~~~m~~~g~~p~---~~~~~~li~~~~~-----~g~~~~a~~l~~~  272 (441)
                      +....|..++. .++..  |+      ...|..++++..+  +.|+   ...|+.+...|.+     -|+.++|.+.|++
T Consensus       152 ve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAle--LDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~fer  229 (301)
T 3u64_A          152 VGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACD--LWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEH  229 (301)
T ss_dssp             HHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHH--HCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHH--hCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHH
Confidence            34445666654 34432  33      4566677777766  4566   5688899888988     4999999999999


Q ss_pred             HHHcCCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHhhCCCC--CCHHH
Q 036107          273 MQEKGCKPSVITCTIVMHALEKA-KQIYEALKVYEKMKSDDCL--TDTSF  319 (441)
Q Consensus       273 m~~~g~~p~~~~~~~ll~~~~~~-~~~~~a~~~~~~m~~~g~~--~~~~~  319 (441)
                      ..+.+-.-+..++......+++. |+.+++.+.+++.......  |+...
T Consensus       230 AL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~~~P~~~l  279 (301)
T 3u64_A          230 LTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPESVPHNKL  279 (301)
T ss_dssp             HHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGGGCSSCHH
T ss_pred             HHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCCChhH
Confidence            98865432467777788888884 9999999999999987766  65443

>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=85.47  E-value=24  Score=33.06  Aligned_cols=196  Identities=13%  Similarity=0.093  Sum_probs=124.9

Q ss_pred             hHHHHHHHhhhhhHhhhh--cCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHhcCCCccHHHHHHHHhhcCHHHHH
Q 036107          105 PDKVVEALKCFCFTWAKT--QTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMS  182 (441)
Q Consensus       105 ~g~~~~A~~~~~~~~~~~--~~g~~p~~~~y~~li~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~  182 (441)
                      .|++..|++.+-......  .....-.......++..|.+.|+++...+.+.-+.... +.... .        .....+
T Consensus        29 ~~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr-~qlk~-a--------i~~~V~   98 (445)
T 4b4t_P           29 QNDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKH-GQLKL-S--------IQYMIQ   98 (445)
T ss_dssp             HHHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTT-TTSHH-H--------HHHHHH
T ss_pred             cCCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHh-hhhHH-H--------HHHHHH
Confidence            467777777664333322  23344457788899999999999999988887766544 22211 0        112223


Q ss_pred             HHHHHHHhcCCHH--HHHHHHHHhhh----CCCC---cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC--CCCCC---Hh
Q 036107          183 VLMDTLVKRNSVA--HAYKVFLKFKD----CISL---SSQIFDVLIHGWCKTRKSDYAQKAMKEMFQH--GFSPD---GV  248 (441)
Q Consensus       183 ~li~~~~~~g~~~--~a~~~~~~~~~----~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~--g~~p~---~~  248 (441)
                      .++.........+  .-..+.+.++.    .+..   .......|...|-..|++.+|.+++.++...  |....   +.
T Consensus        99 ~~~~~l~~~~~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve  178 (445)
T 4b4t_P           99 KVMEYLKSSKSLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQ  178 (445)
T ss_dssp             HHHHHHHHHCTTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHH
T ss_pred             HHHHHHhcCCchhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHH
Confidence            3333333334333  23334443321    2222   2334556788899999999999999998742  32222   35


Q ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHHH----cCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 036107          249 SYTCFIEHYCREKDFRKVDYTLKEMQE----KGCKPS--VITCTIVMHALEKAKQIYEALKVYEKMKS  310 (441)
Q Consensus       249 ~~~~li~~~~~~g~~~~a~~l~~~m~~----~g~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~m~~  310 (441)
                      .|...+..|...+++.+|..+++....    ....|+  ...|...+..+...+++.+|.+.|.+..+
T Consensus       179 ~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~  246 (445)
T 4b4t_P          179 FILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQ  246 (445)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence            677888899999999999999998743    223333  24566777778889999999888877754

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=85.47  E-value=5.2  Score=34.99  Aligned_cols=109  Identities=8%  Similarity=0.010  Sum_probs=73.8

Q ss_pred             HHHHHHHHHHH-HcC--CC------hhHHHHHHHHHHHhcCCCccHHHHHHHHhhcCHHHHHHHHHHHHhc-----CCHH
Q 036107          130 PETYNAMVEAL-GKS--KK------FGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKR-----NSVA  195 (441)
Q Consensus       130 ~~~y~~li~~~-~~~--~~------~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~-----g~~~  195 (441)
                      ...|..++.+- ...  |+      ...|..++++..+..+...            +...|..+...|.+.     |+.+
T Consensus       154 ~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleLDP~~~------------~GsA~~~LG~lY~~vPp~~gGd~e  221 (301)
T 3u64_A          154 TLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDLWPSYQ------------EGAVWNVLTKFYAAAPESFGGGME  221 (301)
T ss_dssp             HHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHHCTTHH------------HHHHHHHHHHHHHHSCTTTTCCHH
T ss_pred             HHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHhCCCcc------------cCHHHHHHHHHHHhCCCccCCCHH
Confidence            44676665533 332  33      4567777777777663322            467888888888884     9999


Q ss_pred             HHHHHHHHhhhCCCC--cHHHHHHHHHHHHhc-CCHHHHHHHHHHHhhCCCC--CCHhhHH
Q 036107          196 HAYKVFLKFKDCISL--SSQIFDVLIHGWCKT-RKSDYAQKAMKEMFQHGFS--PDGVSYT  251 (441)
Q Consensus       196 ~a~~~~~~~~~~~~~--~~~~~~~li~~~~~~-~~~~~a~~~~~~m~~~g~~--p~~~~~~  251 (441)
                      +|.+.|++.-.- .|  +..++...-..+++. |+.+++.+.+++..+....  |+....+
T Consensus       222 kA~~~ferAL~L-nP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~~~P~~~lan  281 (301)
T 3u64_A          222 KAHTAFEHLTRY-CSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPESVPHNKLLV  281 (301)
T ss_dssp             HHHHHHHHHHHH-CCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGGGCSSCHHHH
T ss_pred             HHHHHHHHHHHh-CCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCCChhHHH
Confidence            999999887331 23  355666777778874 8899999999999887655  5543333

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=84.86  E-value=6.1  Score=29.64  Aligned_cols=81  Identities=15%  Similarity=0.004  Sum_probs=38.3

Q ss_pred             HHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHH---HHHHHHHHHHcCCC-CCHHHHHHHHHHHHhcCCHHHHHHHH
Q 036107          230 YAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRK---VDYTLKEMQEKGCK-PSVITCTIVMHALEKAKQIYEALKVY  305 (441)
Q Consensus       230 ~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~---a~~l~~~m~~~g~~-p~~~~~~~ll~~~~~~~~~~~a~~~~  305 (441)
                      .+.+-|.+....|. |+..+--.+-.+++++.....   ++.+++++.+.+-+ -.....-.|--++.+.|++++|.+.+
T Consensus        19 ~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~   97 (126)
T 1nzn_A           19 KFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYV   97 (126)
T ss_dssp             HHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence            34444443333232 444444444445555554333   55555555554311 01222333444566666666666666


Q ss_pred             HHHhhC
Q 036107          306 EKMKSD  311 (441)
Q Consensus       306 ~~m~~~  311 (441)
                      +.+.+.
T Consensus        98 ~~lL~~  103 (126)
T 1nzn_A           98 RGLLQT  103 (126)
T ss_dssp             HHHHHH
T ss_pred             HHHHHh
Confidence            666653

>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}

Probab=84.77  E-value=11  Score=28.53  Aligned_cols=63  Identities=16%  Similarity=0.186  Sum_probs=45.2

Q ss_pred             CHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 036107          227 KSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMH  290 (441)
Q Consensus       227 ~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~  290 (441)
                      |.-+..+-++.+....+.|++.+..+.+.+|.+.+|+.-|.++|+-.+..- .+...+|..+++
T Consensus        68 D~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~-~~~~~iY~y~lq  130 (152)
T 2y69_E           68 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVIQ  130 (152)
T ss_dssp             CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHHH
T ss_pred             cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc-CCchhhHHHHHH
Confidence            444567777777777888888888888888888888888888888876652 223445665553

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=84.73  E-value=6.8  Score=29.38  Aligned_cols=84  Identities=17%  Similarity=0.090  Sum_probs=58.2

Q ss_pred             CCHHHHHHHHHHhhhCCCCcHHHHHHHHHHHHhcCCHHH---HHHHHHHHhhCCCCC--CHhhHHHHHHHHHhcCCHHHH
Q 036107          192 NSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDY---AQKAMKEMFQHGFSP--DGVSYTCFIEHYCREKDFRKV  266 (441)
Q Consensus       192 g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~---a~~~~~~m~~~g~~p--~~~~~~~li~~~~~~g~~~~a  266 (441)
                      ..+..+.+-|......-.++..+--.+--+++++.+...   +..++++....+ .|  .....-.+--++.+.|++++|
T Consensus        15 ~~l~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg~Y~~A   93 (126)
T 1nzn_A           15 EDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKA   93 (126)
T ss_dssp             HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhhhHHHH
Confidence            344455555554433234777777777778888876655   889999988764 23  233344555688999999999


Q ss_pred             HHHHHHHHHc
Q 036107          267 DYTLKEMQEK  276 (441)
Q Consensus       267 ~~l~~~m~~~  276 (441)
                      .+.++.+.+.
T Consensus        94 ~~~~~~lL~~  103 (126)
T 1nzn_A           94 LKYVRGLLQT  103 (126)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHh
Confidence            9999999875

>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}

Probab=84.51  E-value=10  Score=34.25  Aligned_cols=198  Identities=7%  Similarity=0.012  Sum_probs=107.4

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCC--HHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 036107          214 IFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKD--FRKVDYTLKEMQEKGCKPSVITCTIVMHA  291 (441)
Q Consensus       214 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~--~~~a~~l~~~m~~~g~~p~~~~~~~ll~~  291 (441)
                      ....+|.-|...++.++|.+.++++.....  .......+|......++  -+.+-.++..+.. ++-+.......+...
T Consensus        56 ~~~~ii~EYf~~~d~~Ea~~~l~eL~~p~~--~~~~v~~~I~~aLdr~~~erE~~s~LLs~L~~-~~ls~~~i~~gf~~l  132 (358)
T 3eiq_C           56 TLTPIIQEYFEHGDTNEVAEMLRDLNLGEM--KSGVPVLAVSLALEGKASHREMTSKLLSDLCG-TVMSTNDVEKSFDKL  132 (358)
T ss_dssp             HHHHHHHHHHHHCCHHHHHHHHHTTTCCGG--GGGHHHHHHHHHTTSCHHHHHHHHHHHHTTTT-TSCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHhCCchh--HHHHHHHHHHHHhcCChHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHH
Confidence            467789999999999999999999865322  12333344443333332  3456667777764 555555555555554


Q ss_pred             HHhcCCH----HHHHH----HHHHHhhCCCC-CCHH-----------HHHHHH--HHHHhcC--------------cc--
Q 036107          292 LEKAKQI----YEALK----VYEKMKSDDCL-TDTS-----------FYSSLI--FILSKAV--------------RF--  333 (441)
Q Consensus       292 ~~~~~~~----~~a~~----~~~~m~~~g~~-~~~~-----------~~~~li--~~~~~~g--------------~~--  333 (441)
                      +....+.    ..|..    ++.++...++. |...           .-.++-  ..+.+..              ..  
T Consensus       133 le~ldDl~lDiP~a~~~la~flaRaV~d~~l~~~~l~~~~~~~~~~~~~~~l~~a~~~L~~~~~~~~~~~~WG~g~~~~~  212 (358)
T 3eiq_C          133 LKDLPELALDTPRAPQLVGQFIARAVGDGILCNTYIDSYKGTVDCVQARAALDKATVLLSMSKGGKRKDSVWGSGGGQQP  212 (358)
T ss_dssp             HHTHHHHHHHCTTHHHHHHHHHHHHHHTTCSCSSTTGGGC---CCHHHHHHHHHHHHHHTC---------CCCCCCSSSC
T ss_pred             HHhhhhhccccccHHHHHHHHHHHHHHhCCCCHHHHHHHhhcccchHHHHHHHHHHHHHhccchHHHHHHhcCCCCCCcc
Confidence            4444332    23333    33333333332 2211           001110  1111110              00  


Q ss_pred             -----chHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCCCCHHH
Q 036107          334 -----LIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQEST  408 (441)
Q Consensus       334 -----~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~~~~m~~~~~~p~~~~  408 (441)
                           ...+.+|.-|...|+.++|.+.++++....+.+ ......+..++-+.++. ....+.+++..+...|+.+....
T Consensus       213 veelkkki~~lL~EY~~s~D~~EA~~ci~EL~~p~fhh-e~V~~av~~aLE~~~~~-~re~~~~LL~~L~~~glls~~q~  290 (358)
T 3eiq_C          213 VNHLVKEIDMLLKEYLLSGDISEAEHCLKELEVPHFHH-ELVYEAIVMVLESTGES-AFKMILDLLKSLWKSSTITIDQM  290 (358)
T ss_dssp             HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCTTCHH-HHHHHHHHHHHHCCSSH-HHHHHHHHHHHHHHTTCSCHHHH
T ss_pred             HHHHHHHHHHHHHHhccCCCHHHHHHHHHHccCCcchH-HHHHHHHHHHHccCchH-HHHHHHHHHHHHHHCCCCCHHHH
Confidence                 456788999999999999999999986322221 23344555555543332 22334567777777777665555


Q ss_pred             HHHHHHHH
Q 036107          409 HKMLAEEL  416 (441)
Q Consensus       409 ~~~ll~~~  416 (441)
                      ...+.+.+
T Consensus       291 ~~Gf~~vl  298 (358)
T 3eiq_C          291 KRGYERIY  298 (358)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            44444444

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=81.94  E-value=8.3  Score=38.85  Aligned_cols=127  Identities=6%  Similarity=0.079  Sum_probs=77.2

Q ss_pred             HHHHHHHHHHcCCC-hhHHHHHHHHHHHhcCCCccHHHHHHHHhhcCHHHHHHHHHHHHhcCC-HHHHHHHHHH-hhh--
Q 036107          132 TYNAMVEALGKSKK-FGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNS-VAHAYKVFLK-FKD--  206 (441)
Q Consensus       132 ~y~~li~~~~~~~~-~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~-~~~a~~~~~~-~~~--  206 (441)
                      ....++..+...++ .+.|.++|+++....+..             +......++..+.+.++ --+|.++.++ ++.  
T Consensus       250 L~~~Ll~~~~~t~~~~~~a~~~le~L~~~~p~~-------------~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~  316 (754)
T 4gns_B          250 LMYSLKSFIAITPSLVDFTIDYLKGLTKKDPIH-------------DIYYKTAMITILDHIETKELDMITILNETLDPLL  316 (754)
T ss_dssp             HHHHHHHHHHTCGGGHHHHHHHHHHHHHHCGGG-------------HHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcccccHHHHHHHHHHHHHhhCCch-------------hHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhh
Confidence            34556666666666 578999999998855211             11112223333333222 1233333332 211  


Q ss_pred             ----CCCC-cH----------HHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC-HhhHHHHHHHHHhcCCHHHHHHHH
Q 036107          207 ----CISL-SS----------QIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPD-GVSYTCFIEHYCREKDFRKVDYTL  270 (441)
Q Consensus       207 ----~~~~-~~----------~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~a~~l~  270 (441)
                          ...+ +.          ...+.=...+...|+++.|+++-++....  .|+ -.+|..|..+|...|+++.|+-.+
T Consensus       317 ~~~~~l~~~~~~~~~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~--aPseF~tW~~La~vYi~l~d~e~ALLtL  394 (754)
T 4gns_B          317 SLLNDLPPRDADSARLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTEL--ALDSFESWYNLARCHIKKEEYEKALFAI  394 (754)
T ss_dssp             HHHHTCSSCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSSCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             hhhhhhcccccccccccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhc--CchhhHHHHHHHHHHHHhccHHHHHHHH
Confidence                1111 11          11122234466789999999999988763  465 579999999999999999999999


Q ss_pred             HHH
Q 036107          271 KEM  273 (441)
Q Consensus       271 ~~m  273 (441)
                      +-+
T Consensus       395 NSc  397 (754)
T 4gns_B          395 NSM  397 (754)
T ss_dssp             HHS
T ss_pred             hcC
Confidence            876

>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}

Probab=81.01  E-value=15  Score=27.75  Aligned_cols=50  Identities=12%  Similarity=0.170  Sum_probs=44.2

Q ss_pred             CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 036107          262 DFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSD  311 (441)
Q Consensus       262 ~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~  311 (441)
                      |.-+..+-++.+....+.|+.....+.+.+|-+.+++..|.++|+-.+.+
T Consensus        68 D~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K  117 (152)
T 2y69_E           68 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK  117 (152)
T ss_dssp             CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence            45567777788888899999999999999999999999999999998864

>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=80.85  E-value=37  Score=31.78  Aligned_cols=190  Identities=12%  Similarity=0.061  Sum_probs=117.7

Q ss_pred             CChhHHHHHHHHHHHhc---CCCccHHHHHHHHhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhh--CCCCcHHHHHHH
Q 036107          144 KKFGLMWELVKEIDELS---NGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKD--CISLSSQIFDVL  218 (441)
Q Consensus       144 ~~~~~a~~l~~~m~~~~---~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~~~~l  218 (441)
                      |+++.|++.+-.+.+..   ...++           .......++..|.+.|+++...+.+..+..  +..+..  ...+
T Consensus        30 ~~~~~a~e~ll~lEK~~r~~~d~~s-----------~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~a--i~~~   96 (445)
T 4b4t_P           30 NDCNSALDQLLVLEKKTRQASDLAS-----------SKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLS--IQYM   96 (445)
T ss_dssp             HHHHHHHHHHHHHHHHHSSSCSTTT-----------CHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHH--HHHH
T ss_pred             CCHHHHHHHHHHHHHHhhhccchhh-----------HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHH--HHHH
Confidence            67888888777766532   12221           567788899999999999999888877632  322222  2333


Q ss_pred             HH----HHHhcCCHHH--HHHHHHHHhh--CC-CCC---CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCCC---
Q 036107          219 IH----GWCKTRKSDY--AQKAMKEMFQ--HG-FSP---DGVSYTCFIEHYCREKDFRKVDYTLKEMQEK--GCKPS---  281 (441)
Q Consensus       219 i~----~~~~~~~~~~--a~~~~~~m~~--~g-~~p---~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~--g~~p~---  281 (441)
                      ++    ........+.  -..+.+....  .| +-.   .......|...+-..|++.+|.+++.++...  |....   
T Consensus        97 V~~~~~~l~~~~~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~k  176 (445)
T 4b4t_P           97 IQKVMEYLKSSKSLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEK  176 (445)
T ss_dssp             HHHHHHHHHHHCTTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHH
T ss_pred             HHHHHHHHhcCCchhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHH
Confidence            33    3333333332  2223322221  11 111   1223456778888999999999999998654  22211   


Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHhh----CCCCCCHHHHHHHHHHHHhcCccchHHHHHHHHHhcCChhHHHHHHH
Q 036107          282 VITCTIVMHALEKAKQIYEALKVYEKMKS----DDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQ  357 (441)
Q Consensus       282 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~----~g~~~~~~~~~~li~~~~~~g~~~~~~~li~~~~~~g~~~~a~~~~~  357 (441)
                      ...+...++.|...+++..|..++.....    ....|+...              ..+..++..+...+++.+|.+.|.
T Consensus       177 ve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~--------------~~~~~~~~~~~~e~~y~~a~~~y~  242 (445)
T 4b4t_P          177 IQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKL--------------EYYNLLVKISLHKREYLEVAQYLQ  242 (445)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHH--------------HHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHH--------------HHHHHHHHHHHHhhhHHHHHHHHH
Confidence            35677788999999999999999988643    222332221              225666667777778887777776


Q ss_pred             HHH
Q 036107          358 KIE  360 (441)
Q Consensus       358 ~m~  360 (441)
                      +..
T Consensus       243 e~~  245 (445)
T 4b4t_P          243 EIY  245 (445)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            654

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=80.37  E-value=52  Score=33.16  Aligned_cols=129  Identities=12%  Similarity=0.027  Sum_probs=80.6

Q ss_pred             HHHHHHHHHHhcCC-HHHHHHHHHHhhhCCCCcHHHHH-HHHHHHHhcCC-HHHHHHHHHHHhhC------CCCC-CH--
Q 036107          180 AMSVLMDTLVKRNS-VAHAYKVFLKFKDCISLSSQIFD-VLIHGWCKTRK-SDYAQKAMKEMFQH------GFSP-DG--  247 (441)
Q Consensus       180 ~~~~li~~~~~~g~-~~~a~~~~~~~~~~~~~~~~~~~-~li~~~~~~~~-~~~a~~~~~~m~~~------g~~p-~~--  247 (441)
                      -...++..+...|+ .+.|..+|+++....+.....+. .+|..+.+.++ --+|.+++.+..+.      ...+ +.  
T Consensus       250 L~~~Ll~~~~~t~~~~~~a~~~le~L~~~~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~  329 (754)
T 4gns_B          250 LMYSLKSFIAITPSLVDFTIDYLKGLTKKDPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADS  329 (754)
T ss_dssp             HHHHHHHHHHTCGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHH
T ss_pred             HHHHHHHHHcccccHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhccccccc
Confidence            33455555555666 68899999998554333333333 33443333332 22344444443321      1111 11  


Q ss_pred             --------hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 036107          248 --------VSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMK  309 (441)
Q Consensus       248 --------~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~  309 (441)
                              .....-...+...|+++-|+++-++.... .+.+-.+|..|..+|.+.|+++.|+-.++.+.
T Consensus       330 ~~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~-aPseF~tW~~La~vYi~l~d~e~ALLtLNScP  398 (754)
T 4gns_B          330 ARLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTEL-ALDSFESWYNLARCHIKKEEYEKALFAINSMP  398 (754)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred             ccccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhc-CchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence                    11222234466789999999999998775 23357899999999999999999999999884

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A

Probab=80.21  E-value=5.9  Score=33.07  Aligned_cols=85  Identities=12%  Similarity=0.079  Sum_probs=39.6

Q ss_pred             HHHHHHhcCCHHHHHHHHHHhh-hCCCCcHH--HHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhh--HHHHHHHHH
Q 036107          184 LMDTLVKRNSVAHAYKVFLKFK-DCISLSSQ--IFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVS--YTCFIEHYC  258 (441)
Q Consensus       184 li~~~~~~g~~~~a~~~~~~~~-~~~~~~~~--~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~--~~~li~~~~  258 (441)
                      .+...++.|+.+.+..+++.+. .+..++..  .-.+.+...+..|+.+-+.    .+.+.|..++...  -.+.+...+
T Consensus        12 ~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~----~Ll~~g~~~~~~~~~g~t~l~~A~   87 (241)
T 1k1a_A           12 PLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVR----LLVTAGASPMALDRHGQTAAHLAC   87 (241)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHH----HHHHTTCCTTCCCTTSCCHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHHHHH----HHHHcCCCccccCCCCCCHHHHHH
Confidence            3455566677777776666542 23222221  1123344445566654333    3333454444321  112333444


Q ss_pred             hcCCHHHHHHHHHH
Q 036107          259 REKDFRKVDYTLKE  272 (441)
Q Consensus       259 ~~g~~~~a~~l~~~  272 (441)
                      ..|+.+-+..+++.
T Consensus        88 ~~~~~~~~~~Ll~~  101 (241)
T 1k1a_A           88 EHRSPTCLRALLDS  101 (241)
T ss_dssp             HTTCHHHHHHHHHH
T ss_pred             HcCCHHHHHHHHHc
Confidence            55666555544444

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	441
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	99.67
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	99.62
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.39
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.23
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	98.95
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	98.94
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	98.89
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	98.78
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	98.77
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	98.75
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	98.54
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	98.41
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	98.3
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	98.16
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	98.15
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	98.1
d1b89a_	336	Clathrin heavy chain proximal leg segment {Cow (Bo	98.06
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	98.01
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	97.96
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	97.89
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	97.87
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	97.84
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	97.83
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	97.83
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	97.79
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	97.66
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	97.66
d1b89a_	336	Clathrin heavy chain proximal leg segment {Cow (Bo	97.61
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	97.58
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	97.49
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	97.34
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	97.31
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	97.27
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	97.21
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	97.2
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	97.16
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	97.11
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	97.03
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	96.92
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	96.91
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	96.7
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	96.64
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	96.54
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	96.46
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	96.44
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	96.31
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	96.24
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	96.15
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	96.03
d1wy6a1	161	Hypothetical protein ST1625 {Archaeon Sulfolobus t	95.77
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	95.72
d1wy6a1	161	Hypothetical protein ST1625 {Archaeon Sulfolobus t	94.98
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	94.68
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	94.65
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	94.09
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	93.88
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	87.37
d1v54e_	105	Cytochrome c oxidase subunit E {Cow (Bos taurus) [	86.39
d1v54e_	105	Cytochrome c oxidase subunit E {Cow (Bos taurus) [	82.94
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	81.48

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.67  E-value=3.2e-13  Score=124.44  Aligned_cols=339  Identities=9%  Similarity=-0.016  Sum_probs=223.2

Q ss_pred             hHHHhhhhchhhHHHHHhhhcCchhhHHHHHHHHHhcCCChHHHHHHHhhhhhHhhhhcCCCCCCHHHHHHHHHHHHcCC
Q 036107           65 SWVESLKLNEQSRISSHALSEDHETDVDKVSEILRKRYPSPDKVVEALKCFCFTWAKTQTGYMHTPETYNAMVEALGKSK  144 (441)
Q Consensus        65 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~g~~p~~~~y~~li~~~~~~~  144 (441)
                      ..-+.|+++.|..++..+.+..  |+...+...+..+|.+.|++++|+..|+.....    .+-+..+|..+..++.+.|
T Consensus         8 ~~~~~G~~~~A~~~~~~~l~~~--p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~----~p~~~~a~~~l~~~~~~~g   81 (388)
T d1w3ba_           8 REYQAGDFEAAERHCMQLWRQE--PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQ----NPLLAEAYSNLGNVYKERG   81 (388)
T ss_dssp             HHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHHT
T ss_pred             HHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----CCCCHHHHHHHHHHhhhhc
Confidence            3446788899999988887754  222256666777888889999999988643322    1124678999999999999


Q ss_pred             ChhHHHHHHHHHHHhcCCCccHHHHHHHHhh--------------------cCHHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 036107          145 KFGLMWELVKEIDELSNGYVSLAAMSTVMRR--------------------LDTRAMSVLMDTLVKRNSVAHAYKVFLKF  204 (441)
Q Consensus       145 ~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~li~~~~~~g~~~~a~~~~~~~  204 (441)
                      ++++|.+.+.......+..............                    ................+....+...+...
T Consensus        82 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (388)
T d1w3ba_          82 QLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKA  161 (388)
T ss_dssp             CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhhhhHHHHHHh
Confidence            9999999999888865333222111111100                    02233344444555556666666666555


Q ss_pred             hhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH
Q 036107          205 KDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVIT  284 (441)
Q Consensus       205 ~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~  284 (441)
                      ....+.+...+..+...+...|++++|...+++..+.. +-+...|..+...+...|++++|...+++..+.+. .+...
T Consensus       162 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~  239 (388)
T d1w3ba_         162 IETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSP-NHAVV  239 (388)
T ss_dssp             HHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCT-TCHHH
T ss_pred             hccCcchhHHHHhhcccccccCcHHHHHHHHHHHHHhC-cccHHHHHHHhhhhhccccHHHHHHHHHHhHHHhh-hHHHH
Confidence            33334456667777777788888888888887776532 12355677777788888888888888888776543 35666


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCccchHHHHHHHHHhcCChhHHHHHHHHHHHcCC
Q 036107          285 CTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSC  364 (441)
Q Consensus       285 ~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~  364 (441)
                      +..+...+.+.|++++|...|++..+..  |+..               ..|..+...+...|++++|++.++...... 
T Consensus       240 ~~~l~~~~~~~~~~~~A~~~~~~al~~~--p~~~---------------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-  301 (388)
T d1w3ba_         240 HGNLACVYYEQGLIDLAIDTYRRAIELQ--PHFP---------------DAYCNLANALKEKGSVAEAEDCYNTALRLC-  301 (388)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHTC--SSCH---------------HHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCH---------------HHHHHHHHHHHHcCCHHHHHHHHHhhhccC-
Confidence            7777778888888888888888777643  3211               126666667777777777777777765442 


Q ss_pred             CCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCccHHHHHHHHHHH
Q 036107          365 KPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVP-QESTHKMLAEELEKKSLGNAKERIDELLTH  434 (441)
Q Consensus       365 ~p~~~t~~~li~~~~~~g~~~~a~~~~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~  434 (441)
                      ..+...+..+...+.+.|++++|.+   .+++..  .+.| +..++..+...+.+.|++++|.+.++...+
T Consensus       302 ~~~~~~~~~l~~~~~~~~~~~~A~~---~~~~al--~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  367 (388)
T d1w3ba_         302 PTHADSLNNLANIKREQGNIEEAVR---LYRKAL--EVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR  367 (388)
T ss_dssp             TTCHHHHHHHHHHHHTTTCHHHHHH---HHHHHT--TSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHT
T ss_pred             CccchhhhHHHHHHHHCCCHHHHHH---HHHHHH--HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            4455666677777777777777755   444432  2334 345667777777777787777777776544

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.62  E-value=4.4e-13  Score=123.53  Aligned_cols=357  Identities=13%  Similarity=0.030  Sum_probs=244.1

Q ss_pred             hcccchhcccccCccchhccCCCCCCC-CcccccchhhHHHhhhhchhhHHHHHhhhcCchhhHHHHHHHHHhcCCChHH
Q 036107           29 LCNRHCITNELTGLPSWLKFFDTQSPD-EDFVIPSLASWVESLKLNEQSRISSHALSEDHETDVDKVSEILRKRYPSPDK  107 (441)
Q Consensus        29 l~~~~~~~~~a~~l~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~g~  107 (441)
                      +-+.|++. +|.+.+.-....   .|+ ...+..+-..+.+.|+++.|...+..+.+...  +...++..+..+|.+.|+
T Consensus         9 ~~~~G~~~-~A~~~~~~~l~~---~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p--~~~~a~~~l~~~~~~~g~   82 (388)
T d1w3ba_           9 EYQAGDFE-AAERHCMQLWRQ---EPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNP--LLAEAYSNLGNVYKERGQ   82 (388)
T ss_dssp             HHHHTCHH-HHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHHTC
T ss_pred             HHHcCCHH-HHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHhhhhcc
Confidence            34567777 777777633222   232 23444444556677888888888888776542  222466667778888888


Q ss_pred             HHHHHhhhhhHhhhhcCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHhcCCCccHHHHHHH---------------
Q 036107          108 VVEALKCFCFTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTV---------------  172 (441)
Q Consensus       108 ~~~A~~~~~~~~~~~~~g~~p~~~~y~~li~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~~---------------  172 (441)
                      +++|+..+.......    ..+...+..........+....+.......................               
T Consensus        83 ~~~A~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (388)
T d1w3ba_          83 LQEAIEHYRHALRLK----PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACY  158 (388)
T ss_dssp             HHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred             ccccccccccccccc----cccccccccccccccccccccccccccccccccccccccccccccccccccchhhhhHHHH
Confidence            888888876333221    1122333333333333333333333332222211111110000000               


Q ss_pred             ----Hh-hcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCH
Q 036107          173 ----MR-RLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDG  247 (441)
Q Consensus       173 ----~~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~  247 (441)
                          .. .-+...+..+...+...|+.++|...++..-...+-+...|..+...+...|++++|...|++....+ ..+.
T Consensus       159 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~  237 (388)
T d1w3ba_         159 LKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHA  237 (388)
T ss_dssp             HHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCH
T ss_pred             HHhhccCcchhHHHHhhcccccccCcHHHHHHHHHHHHHhCcccHHHHHHHhhhhhccccHHHHHHHHHHhHHHh-hhHH
Confidence                00 01567788888899999999999999988744445567788999999999999999999999988753 2456


Q ss_pred             hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHH
Q 036107          248 VSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFIL  327 (441)
Q Consensus       248 ~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~  327 (441)
                      ..+..+...+.+.|++++|...|++..+... -+..++..+...+...|++++|.+.++...... +.+...        
T Consensus       238 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~--------  307 (388)
T d1w3ba_         238 VVHGNLACVYYEQGLIDLAIDTYRRAIELQP-HFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADS--------  307 (388)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCS-SCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHH--------
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccC-Cccchh--------
Confidence            7788888999999999999999999887632 357889999999999999999999999887753 223333        


Q ss_pred             HhcCccchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCCCC-
Q 036107          328 SKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPD-CETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQ-  405 (441)
Q Consensus       328 ~~~g~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~t~~~li~~~~~~g~~~~a~~~~~~~~~m~~~~~~p~-  405 (441)
                              +..+...+...|++++|++.|++..+.  .|+ ..++..+-..+.+.|++++|.+   .+++..  .+.|+ 
T Consensus       308 --------~~~l~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~---~~~~al--~l~P~~  372 (388)
T d1w3ba_         308 --------LNNLANIKREQGNIEEAVRLYRKALEV--FPEFAAAHSNLASVLQQQGKLQEALM---HYKEAI--RISPTF  372 (388)
T ss_dssp             --------HHHHHHHHHTTTCHHHHHHHHHHHTTS--CTTCHHHHHHHHHHHHTTTCCHHHHH---HHHHHH--TTCTTC
T ss_pred             --------hhHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHH---HHHHHH--HhCCCC
Confidence                    777888889999999999999998754  554 5578888899999999999977   555543  34564 


Q ss_pred             HHHHHHHHHHHHhcCC
Q 036107          406 ESTHKMLAEELEKKSL  421 (441)
Q Consensus       406 ~~~~~~ll~~~~~~g~  421 (441)
                      ...|..+...|.+.|+
T Consensus       373 ~~a~~~lg~~~~~~~D  388 (388)
T d1w3ba_         373 ADAYSNMGNTLKEMQD  388 (388)
T ss_dssp             HHHHHHHHHHHHHTCC
T ss_pred             HHHHHHHHHHHHHcCC
Confidence            6688888888887775

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.39  E-value=2.3e-10  Score=102.85  Aligned_cols=257  Identities=9%  Similarity=-0.008  Sum_probs=193.3

Q ss_pred             HHHHHcCCChhHHHHHHHHHHHhcCCCccHHHHHHHHhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcHHHHH
Q 036107          137 VEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFD  216 (441)
Q Consensus       137 i~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~  216 (441)
                      -..+.+.|++++|...|++..+..|.              +..+|..+..++...|++++|...|++.-...+-+...|.
T Consensus        26 g~~~~~~g~~~~A~~~~~~al~~~P~--------------~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~   91 (323)
T d1fcha_          26 GLRRLQEGDLPNAVLLFEAAVQQDPK--------------HMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALM   91 (323)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHSCTT--------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCC--------------CHHHHHHHHHHHHHcCChHHHHHHHHhhhccccccccccc
Confidence            44577899999999999999885532              6788999999999999999999999987544455677889


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHh----------------hHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CC
Q 036107          217 VLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGV----------------SYTCFIEHYCREKDFRKVDYTLKEMQEKG-CK  279 (441)
Q Consensus       217 ~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~----------------~~~~li~~~~~~g~~~~a~~l~~~m~~~g-~~  279 (441)
                      .+...|...|++++|.+.+++.....  |+..                .....+..+...+.+.+|...|.+..+.. -.
T Consensus        92 ~la~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~  169 (323)
T d1fcha_          92 ALAVSFTNESLQRQACEILRDWLRYT--PAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTS  169 (323)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHTS--TTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTS
T ss_pred             cccccccccccccccccchhhHHHhc--cchHHHHHhhhhhhhhcccccchhhHHHHHHhhHHHHHHHHHHHHHHHhhcc
Confidence            99999999999999999999987632  2211                11122333445567888888888876543 34


Q ss_pred             CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCccchHHHHHHHHHhcCChhHHHHHHHHH
Q 036107          280 PSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKI  359 (441)
Q Consensus       280 p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~~~li~~~~~~g~~~~a~~~~~~m  359 (441)
                      ++..++..+...+...|++++|...|+......  |+..               ..|..+...|...|++++|++.|++.
T Consensus       170 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~--p~~~---------------~~~~~lg~~~~~~g~~~~A~~~~~~a  232 (323)
T d1fcha_         170 IDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR--PNDY---------------LLWNKLGATLANGNQSEEAVAAYRRA  232 (323)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCH---------------HHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             cccccchhhHHHHHHHHHHhhhhcccccccccc--cccc---------------cchhhhhhcccccccchhHHHHHHHH
Confidence            567888889999999999999999999987643  3221               23888888999999999999999998


Q ss_pred             HHcCCCC-CHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCC-------CCCHHHHHHHHHHHHhcCCccHHHHH
Q 036107          360 EEDSCKP-DCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGI-------VPQESTHKMLAEELEKKSLGNAKERI  428 (441)
Q Consensus       360 ~~~g~~p-~~~t~~~li~~~~~~g~~~~a~~~~~~~~~m~~~~~-------~p~~~~~~~ll~~~~~~g~~~~a~~~  428 (441)
                      .+.  .| +...+..+-.+|.+.|++++|.+.++..-++.....       ......|..+-.++...|+.+.+...
T Consensus       233 l~~--~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~l~~al~~~~~~d~~~~~  307 (323)
T d1fcha_         233 LEL--QPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAA  307 (323)
T ss_dssp             HHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHH
T ss_pred             HHH--hhccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcChhhhhhhHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence            764  44 455788899999999999999887665555433322       22334566677777777777766543

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.23  E-value=3.8e-09  Score=94.63  Aligned_cols=229  Identities=8%  Similarity=-0.039  Sum_probs=172.1

Q ss_pred             HHHHHhcCCHHHHHHHHHHhhhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHH
Q 036107          185 MDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFR  264 (441)
Q Consensus       185 i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~  264 (441)
                      -..+.+.|++++|...|+..-+..+-+...|..+..+|...|++++|...|++..+.. +-+...|..+...+...|+++
T Consensus        26 g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~  104 (323)
T d1fcha_          26 GLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFTNESLQR  104 (323)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccc-ccccccccccccccccccccc
Confidence            4457789999999999999866556678889999999999999999999999988742 124678888889999999999


Q ss_pred             HHHHHHHHHHHcCCC--------------CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCC-CCCCHHHHHHHHHHHHh
Q 036107          265 KVDYTLKEMQEKGCK--------------PSVITCTIVMHALEKAKQIYEALKVYEKMKSDD-CLTDTSFYSSLIFILSK  329 (441)
Q Consensus       265 ~a~~l~~~m~~~g~~--------------p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g-~~~~~~~~~~li~~~~~  329 (441)
                      +|.+.+++.......              .+.......+..+...+.+.++.+.|....+.. -.++..+          
T Consensus       105 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~~~----------  174 (323)
T d1fcha_         105 QACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDV----------  174 (323)
T ss_dssp             HHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHH----------
T ss_pred             ccccchhhHHHhccchHHHHHhhhhhhhhcccccchhhHHHHHHhhHHHHHHHHHHHHHHHhhccccccc----------
Confidence            999999998764211              011112223334555677788888888776532 1223333          


Q ss_pred             cCccchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCCC-CHHH
Q 036107          330 AVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVP-QEST  408 (441)
Q Consensus       330 ~g~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~~~~m~~~~~~p-~~~~  408 (441)
                            +..+...+...|++++|+..|++..... .-+...|..+-..+.+.|++++|.+.++...++     .| +...
T Consensus       175 ------~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-----~p~~~~a  242 (323)
T d1fcha_         175 ------QCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAAYRRALEL-----QPGYIRS  242 (323)
T ss_dssp             ------HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHH
T ss_pred             ------chhhHHHHHHHHHHhhhhcccccccccc-cccccchhhhhhcccccccchhHHHHHHHHHHH-----hhccHHH
Confidence                  7777788889999999999999987643 224567888888999999999998755543332     33 4668


Q ss_pred             HHHHHHHHHhcCCccHHHHHHHHHHHHh
Q 036107          409 HKMLAEELEKKSLGNAKERIDELLTHAT  436 (441)
Q Consensus       409 ~~~ll~~~~~~g~~~~a~~~~~~m~~~~  436 (441)
                      |..+..+|.+.|++++|.+.++...+..
T Consensus       243 ~~~lg~~~~~~g~~~~A~~~~~~al~l~  270 (323)
T d1fcha_         243 RYNLGISCINLGAHREAVEHFLEALNMQ  270 (323)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence            8899999999999999999998865543

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=98.95  E-value=1.2e-06  Score=78.31  Aligned_cols=280  Identities=7%  Similarity=-0.068  Sum_probs=192.2

Q ss_pred             HHHHHHcCCChhHHHHHHHHHHHhcCCCccHHHHHHHHhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhh---CC---C
Q 036107          136 MVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKD---CI---S  209 (441)
Q Consensus       136 li~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~---~~---~  209 (441)
                      .-..+...|++++|.+++++.....+..+...         ...++..+-..+...|++++|.+.|+....   ..   .
T Consensus        18 rA~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~---------~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~   88 (366)
T d1hz4a_          18 RAQVAINDGNPDEAERLAKLALEELPPGWFYS---------RIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWH   88 (366)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHH---------HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHhhCcCCCcHH---------HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchH
Confidence            34556788999999999999877543221100         134677788889999999999999987622   11   1


Q ss_pred             CcHHHHHHHHHHHHhcCCHHHHHHHHHHHhh----CCCCCC---HhhHHHHHHHHHhcCCHHHHHHHHHHHHHc----CC
Q 036107          210 LSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQ----HGFSPD---GVSYTCFIEHYCREKDFRKVDYTLKEMQEK----GC  278 (441)
Q Consensus       210 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~----~g~~p~---~~~~~~li~~~~~~g~~~~a~~l~~~m~~~----g~  278 (441)
                      .....+..+...+...|++..+...+.+...    .+....   ...+..+-..+...|+++.+...+....+.    +.
T Consensus        89 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~  168 (366)
T d1hz4a_          89 YALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQP  168 (366)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCG
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhh
Confidence            1234456667788899999999998887653    211111   235556667888999999999999988654    33


Q ss_pred             CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC--CCCCCHHHHHHHHHHHHhcCccchHHHHHHHHHhcCChhHHHHHH
Q 036107          279 KPSVITCTIVMHALEKAKQIYEALKVYEKMKSD--DCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLR  356 (441)
Q Consensus       279 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~--g~~~~~~~~~~li~~~~~~g~~~~~~~li~~~~~~g~~~~a~~~~  356 (441)
                      ......+......+...++...+...+.+....  ..........            ..+..+...+...|+.++|...+
T Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~a~~~~  236 (366)
T d1hz4a_         169 QQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWIS------------NANKVRVIYWQMTGDKAAAANWL  236 (366)
T ss_dssp             GGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHH------------HHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHH------------HHHHHHHHHHHhcccHHHHHHHH
Confidence            334566777778888999999999888776542  1111111100            22566677788899999999999


Q ss_pred             HHHHHcCCCC---CHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHH-CCCCCCH-HHHHHHHHHHHhcCCccHHHHHHHH
Q 036107          357 QKIEEDSCKP---DCETHARSLKMCCHKKRMKDGMLVLNLMREMLS-KGIVPQE-STHKMLAEELEKKSLGNAKERIDEL  431 (441)
Q Consensus       357 ~~m~~~g~~p---~~~t~~~li~~~~~~g~~~~a~~~~~~~~~m~~-~~~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~  431 (441)
                      ++........   ....+..+...+...|++++|.+.++....... .+..|+. ..+..+-..|.+.|++++|.+.++.
T Consensus       237 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~  316 (366)
T d1hz4a_         237 RHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLD  316 (366)
T ss_dssp             HHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             HHHHHhccccchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence            8865433222   233455677888999999999886664443332 3555543 4777788889999999999999987


Q ss_pred             HHHHh
Q 036107          432 LTHAT  436 (441)
Q Consensus       432 m~~~~  436 (441)
                      -....
T Consensus       317 Al~l~  321 (366)
T d1hz4a_         317 ALKLA  321 (366)
T ss_dssp             HHHHH
T ss_pred             HHHHh
Confidence            65443

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.94  E-value=2e-07  Score=82.60  Aligned_cols=188  Identities=11%  Similarity=0.060  Sum_probs=125.8

Q ss_pred             CHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 036107          227 KSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYE  306 (441)
Q Consensus       227 ~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~  306 (441)
                      ..++|..+|++..+...+.+...|...+....+.|++++|..+|+.+.+.........|...+..+.+.|+++.|.++|+
T Consensus        79 ~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~  158 (308)
T d2onda1          79 FSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFK  158 (308)
T ss_dssp             HHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHH
Confidence            45677788887776544445566777777778888888888888887765443335567888888888888888888888


Q ss_pred             HHhhCCCCCCHHHHHHHHHHHHhcCccchHHHHH-HHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChh
Q 036107          307 KMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMI-SSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMK  385 (441)
Q Consensus       307 ~m~~~g~~~~~~~~~~li~~~~~~g~~~~~~~li-~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~  385 (441)
                      ...+.+.... ..                |.... .-+...|+.+.|..+|+.+... ..-+...|...+..+.+.|+++
T Consensus       159 ~al~~~~~~~-~~----------------~~~~a~~e~~~~~~~~~a~~i~e~~l~~-~p~~~~~w~~y~~~~~~~g~~~  220 (308)
T d2onda1         159 KAREDARTRH-HV----------------YVTAALMEYYCSKDKSVAFKIFELGLKK-YGDIPEYVLAYIDYLSHLNEDN  220 (308)
T ss_dssp             HHHTSTTCCT-HH----------------HHHHHHHHHHTSCCHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHTTCCHH
T ss_pred             HHHHhCCCcH-HH----------------HHHHHHHHHHhccCHHHHHHHHHHHHHh-hhhhHHHHHHHHHHHHHcCChH
Confidence            8776543221 11                22211 2233457778888888887754 2334567777888888888888


Q ss_pred             hHHHHHHHHHHHHHC-CCCCC--HHHHHHHHHHHHhcCCccHHHHHHHHHHHH
Q 036107          386 DGMLVLNLMREMLSK-GIVPQ--ESTHKMLAEELEKKSLGNAKERIDELLTHA  435 (441)
Q Consensus       386 ~a~~~~~~~~~m~~~-~~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~  435 (441)
                      .|+.+++   +.... +..|+  ...|...+..-...|+.+.+.++.+++...
T Consensus       221 ~aR~~fe---~ai~~~~~~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~  270 (308)
T d2onda1         221 NTRVLFE---RVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA  270 (308)
T ss_dssp             HHHHHHH---HHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHH---HHHHhCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            8877444   43333 34443  456777777777788888888888876554

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=98.89  E-value=1.6e-06  Score=77.43  Aligned_cols=309  Identities=8%  Similarity=-0.002  Sum_probs=207.5

Q ss_pred             HHhcCCChHHHHHHHhhhhhHhhhhcCCCCC-CHHHHHHHHHHHHcCCChhHHHHHHHHHHHhcCCCccHHHHHHHHhhc
Q 036107           98 LRKRYPSPDKVVEALKCFCFTWAKTQTGYMH-TPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRL  176 (441)
Q Consensus        98 l~~~~~~~g~~~~A~~~~~~~~~~~~~g~~p-~~~~y~~li~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~  176 (441)
                      ....+...|++++|++.++........+..+ ....++.+-..+...|++++|.+.|++.....+.......        
T Consensus        18 rA~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~--------   89 (366)
T d1hz4a_          18 RAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHY--------   89 (366)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHH--------
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHH--------
Confidence            3455677899999999986433221111000 1346777888899999999999999988764322211110        


Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHhh----h-C--CCC-cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC----CCC
Q 036107          177 DTRAMSVLMDTLVKRNSVAHAYKVFLKFK----D-C--ISL-SSQIFDVLIHGWCKTRKSDYAQKAMKEMFQH----GFS  244 (441)
Q Consensus       177 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~----~-~--~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----g~~  244 (441)
                      ...++..+...+...|++..+...+....    . .  ..+ ....+..+-..+...|+++.+...+......    +..
T Consensus        90 ~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~  169 (366)
T d1hz4a_          90 ALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQ  169 (366)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGG
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhh
Confidence            23556677788889999999999987651    1 1  112 2234556677888999999999999888653    233


Q ss_pred             CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHH
Q 036107          245 PDGVSYTCFIEHYCREKDFRKVDYTLKEMQEK----GCKPS--VITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTS  318 (441)
Q Consensus       245 p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~----g~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~  318 (441)
                      ....++..+...+...++..++...+.+....    +..+.  ...+..+...+...|++++|...+....+.....+..
T Consensus       170 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~  249 (366)
T d1hz4a_         170 QQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHF  249 (366)
T ss_dssp             GGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGG
T ss_pred             hHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchH
Confidence            34456667777788899999999888876442    22111  2345666777889999999999999877643332221


Q ss_pred             HHHHHHHHHHhcCccchHHHHHHHHHhcCChhHHHHHHHHHHH----cCCCCCH-HHHHHHHHHHHhcCChhhHHHHHHH
Q 036107          319 FYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEE----DSCKPDC-ETHARSLKMCCHKKRMKDGMLVLNL  393 (441)
Q Consensus       319 ~~~~li~~~~~~g~~~~~~~li~~~~~~g~~~~a~~~~~~m~~----~g~~p~~-~t~~~li~~~~~~g~~~~a~~~~~~  393 (441)
                      ..             ..+..+...+...|++++|...+++...    .+..|+. .++..+-..|.+.|++++|.+.++-
T Consensus       250 ~~-------------~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~  316 (366)
T d1hz4a_         250 LQ-------------GQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLD  316 (366)
T ss_dssp             GH-------------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             HH-------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence            11             2256677888999999999999988753    3444544 3667777889999999999886654


Q ss_pred             HHHHHH-CCCCC----CHHHHHHHHHHHHhcCCccHHHH
Q 036107          394 MREMLS-KGIVP----QESTHKMLAEELEKKSLGNAKER  427 (441)
Q Consensus       394 ~~~m~~-~~~~p----~~~~~~~ll~~~~~~g~~~~a~~  427 (441)
                      --++.. .|...    ....+..++..+...++.+++++
T Consensus       317 Al~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~e~e~  355 (366)
T d1hz4a_         317 ALKLANRTGFISHFVIEGEAMAQQLRQLIQLNTLPELEQ  355 (366)
T ss_dssp             HHHHHHHHCCCHHHHTTHHHHHHHHHHHHHTTCSCHHHH
T ss_pred             HHHHhhhcCcHHHHHHHHHHHHHHHHHHHhcCCChHHHH
Confidence            333322 24332    23456667778888888888765

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.78  E-value=2.4e-06  Score=75.69  Aligned_cols=228  Identities=8%  Similarity=0.006  Sum_probs=163.2

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcHHHHHHHHHHHHhcC-CHHHHHHHHHHHhhCCCCCCHhhHHHHHHH
Q 036107          178 TRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTR-KSDYAQKAMKEMFQHGFSPDGVSYTCFIEH  256 (441)
Q Consensus       178 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~-~~~~a~~~~~~m~~~g~~p~~~~~~~li~~  256 (441)
                      ...++.+-..+.+.+..++|+++++.+-.-.+-+...|+..-.++...| ++++|+..++...+.. +-+..+|+.+-..
T Consensus        43 ~~a~~~~~~~~~~~e~~~~Al~~~~~ai~lnP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~-p~~~~a~~~~~~~  121 (315)
T d2h6fa1          43 RDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRVL  121 (315)
T ss_dssp             HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCchHHHHHHHHHHHHHCCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHH-HhhhhHHHHHhHH
Confidence            4566677777888999999999999985555667778898888888876 5999999999987743 2357899999999


Q ss_pred             HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCccchH
Q 036107          257 YCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIY  336 (441)
Q Consensus       257 ~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~  336 (441)
                      +.+.|++++|++.++.+.+.... +...|..+...+.+.|++++|.+.++.+.+.+. -+...                |
T Consensus       122 ~~~l~~~~eAl~~~~kal~~dp~-n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p-~n~~a----------------~  183 (315)
T d2h6fa1         122 VEWLRDPSQELEFIADILNQDAK-NYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDV-RNNSV----------------W  183 (315)
T ss_dssp             HHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCT-TCHHH----------------H
T ss_pred             HHhhccHHHHHHHHhhhhhhhhc-chHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCC-ccHHH----------------H
Confidence            99999999999999999886433 789999999999999999999999999998642 23444                4


Q ss_pred             HHHHHHHHhcCC------hhHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCCCCHHHH
Q 036107          337 NTMISSACVRSE------EGNALKLRQKIEEDSCKP-DCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTH  409 (441)
Q Consensus       337 ~~li~~~~~~g~------~~~a~~~~~~m~~~g~~p-~~~t~~~li~~~~~~g~~~~a~~~~~~~~~m~~~~~~p~~~~~  409 (441)
                      +.+...+.+.+.      .++|++.+.+..+.  .| +...|.-+...+. ....+++.+.++.+.++.  ....+...+
T Consensus       184 ~~r~~~l~~~~~~~~~~~~~~ai~~~~~al~~--~P~~~~~~~~l~~ll~-~~~~~~~~~~~~~~~~l~--~~~~~~~~~  258 (315)
T d2h6fa1         184 NQRYFVISNTTGYNDRAVLEREVQYTLEMIKL--VPHNESAWNYLKGILQ-DRGLSKYPNLLNQLLDLQ--PSHSSPYLI  258 (315)
T ss_dssp             HHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHH--STTCHHHHHHHHHHHT-TTCGGGCHHHHHHHHHHT--TTCCCHHHH
T ss_pred             HHHHHHHHHccccchhhhhHHhHHHHHHHHHh--CCCchHHHHHHHHHHH-hcChHHHHHHHHHHHHhC--CCcCCHHHH
Confidence            443333333333      56788888887754  44 4555555544444 444677766555554432  223356677


Q ss_pred             HHHHHHHHhc--CCccHHHHHH
Q 036107          410 KMLAEELEKK--SLGNAKERID  429 (441)
Q Consensus       410 ~~ll~~~~~~--g~~~~a~~~~  429 (441)
                      ..+...|...  +..+.+...+
T Consensus       259 ~~l~~~y~~~~~~~~~~~~~~~  280 (315)
T d2h6fa1         259 AFLVDIYEDMLENQCDNKEDIL  280 (315)
T ss_dssp             HHHHHHHHHHHHTTCSSHHHHH
T ss_pred             HHHHHHHHHHHhcCHHHHHHHH
Confidence            7777777543  4444444333

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.77  E-value=3.6e-06  Score=74.29  Aligned_cols=187  Identities=11%  Similarity=0.016  Sum_probs=139.1

Q ss_pred             CCHHHHHHHHHHhhh-CCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHH
Q 036107          192 NSVAHAYKVFLKFKD-CISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTL  270 (441)
Q Consensus       192 g~~~~a~~~~~~~~~-~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~l~  270 (441)
                      +..++|..+|++.-. ..+.+...|...+....+.|+++.|..+|+++.+........+|...+..+.+.|++++|.++|
T Consensus        78 ~~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~  157 (308)
T d2onda1          78 LFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIF  157 (308)
T ss_dssp             HHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred             cchHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHH
Confidence            456788888888644 3445666788888999999999999999999987533333457899999999999999999999


Q ss_pred             HHHHHcCCCCCHHHHHHHHH-HHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCccchHHHHHHHHHhcCCh
Q 036107          271 KEMQEKGCKPSVITCTIVMH-ALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEE  349 (441)
Q Consensus       271 ~~m~~~g~~p~~~~~~~ll~-~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~~~li~~~~~~g~~  349 (441)
                      +...+.+.. +...|..... -+...|+.+.|..+|+.+.+.. +.+..                .|...+..+...|+.
T Consensus       158 ~~al~~~~~-~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~-p~~~~----------------~w~~y~~~~~~~g~~  219 (308)
T d2onda1         158 KKAREDART-RHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPE----------------YVLAYIDYLSHLNED  219 (308)
T ss_dssp             HHHHTSTTC-CTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH-TTCHH----------------HHHHHHHHHHTTCCH
T ss_pred             HHHHHhCCC-cHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhh-hhhHH----------------HHHHHHHHHHHcCCh
Confidence            999877543 3333433332 2345689999999999998752 22333                388888888899999


Q ss_pred             hHHHHHHHHHHHcC-CCCC--HHHHHHHHHHHHhcCChhhHHHHHHHHHH
Q 036107          350 GNALKLRQKIEEDS-CKPD--CETHARSLKMCCHKKRMKDGMLVLNLMRE  396 (441)
Q Consensus       350 ~~a~~~~~~m~~~g-~~p~--~~t~~~li~~~~~~g~~~~a~~~~~~~~~  396 (441)
                      +.|..+|++..... ..|+  ...|...+.--...|+.+.+.++.+-..+
T Consensus       220 ~~aR~~fe~ai~~~~~~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~  269 (308)
T d2onda1         220 NNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFT  269 (308)
T ss_dssp             HHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            99999999987643 4554  34678888877788999998775544433

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.75  E-value=5.5e-06  Score=73.26  Aligned_cols=226  Identities=6%  Similarity=-0.035  Sum_probs=167.6

Q ss_pred             HHHHHHHHHHHHcCCChhHHHHHHHHHHHhcCCCccHHHHHHHHhhcCHHHHHHHHHHHHhcC-CHHHHHHHHHHhhhCC
Q 036107          130 PETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRN-SVAHAYKVFLKFKDCI  208 (441)
Q Consensus       130 ~~~y~~li~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~a~~~~~~~~~~~  208 (441)
                      ...|+.+-..+.+.+.+++|+++++++.+..|.              +..+|+....++...| ++++|+..++..-...
T Consensus        43 ~~a~~~~~~~~~~~e~~~~Al~~~~~ai~lnP~--------------~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~  108 (315)
T d2h6fa1          43 RDVYDYFRAVLQRDERSERAFKLTRDAIELNAA--------------NYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ  108 (315)
T ss_dssp             HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTT--------------CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHhCCchHHHHHHHHHHHHHCCC--------------ChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHH
Confidence            346777777788899999999999999997643              6778888888888876 5899999999885555


Q ss_pred             CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 036107          209 SLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIV  288 (441)
Q Consensus       209 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~l  288 (441)
                      +-+..+|+.+-..+.+.|++++|++.++++.+.. +.+...|..+...+.+.|++++|++.+++..+.... +...|+.+
T Consensus       109 p~~~~a~~~~~~~~~~l~~~~eAl~~~~kal~~d-p~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p~-n~~a~~~r  186 (315)
T d2h6fa1         109 PKNYQVWHHRRVLVEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR-NNSVWNQR  186 (315)
T ss_dssp             TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHH
T ss_pred             HhhhhHHHHHhHHHHhhccHHHHHHHHhhhhhhh-hcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCCc-cHHHHHHH
Confidence            6788899999999999999999999999998742 235789999999999999999999999999887543 67788877


Q ss_pred             HHHHHhcCC------HHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCccchHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 036107          289 MHALEKAKQ------IYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEED  362 (441)
Q Consensus       289 l~~~~~~~~------~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~  362 (441)
                      ...+.+.+.      +++|.+.+....+.. +.+...                |+.+...+. ....+++.+.++...+.
T Consensus       187 ~~~l~~~~~~~~~~~~~~ai~~~~~al~~~-P~~~~~----------------~~~l~~ll~-~~~~~~~~~~~~~~~~l  248 (315)
T d2h6fa1         187 YFVISNTTGYNDRAVLEREVQYTLEMIKLV-PHNESA----------------WNYLKGILQ-DRGLSKYPNLLNQLLDL  248 (315)
T ss_dssp             HHHHHHTTCSCSHHHHHHHHHHHHHHHHHS-TTCHHH----------------HHHHHHHHT-TTCGGGCHHHHHHHHHH
T ss_pred             HHHHHHccccchhhhhHHhHHHHHHHHHhC-CCchHH----------------HHHHHHHHH-hcChHHHHHHHHHHHHh
Confidence            766666665      567888888777653 223433                555544443 34457788888777654


Q ss_pred             CCC-CCHHHHHHHHHHHHhc--CChhhHHH
Q 036107          363 SCK-PDCETHARSLKMCCHK--KRMKDGML  389 (441)
Q Consensus       363 g~~-p~~~t~~~li~~~~~~--g~~~~a~~  389 (441)
                      ... .+...+..+...|...  +..+.+..
T Consensus       249 ~~~~~~~~~~~~l~~~y~~~~~~~~~~~~~  278 (315)
T d2h6fa1         249 QPSHSSPYLIAFLVDIYEDMLENQCDNKED  278 (315)
T ss_dssp             TTTCCCHHHHHHHHHHHHHHHHTTCSSHHH
T ss_pred             CCCcCCHHHHHHHHHHHHHHHhcCHHHHHH
Confidence            322 3445566666666543  44444433

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=98.54  E-value=9.1e-06  Score=69.25  Aligned_cols=206  Identities=10%  Similarity=-0.021  Sum_probs=128.2

Q ss_pred             HHHHHHHHHHHHcCCChhHHHHHHHHHHHhcCCCccHHHHHHHHhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCC
Q 036107          130 PETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCIS  209 (441)
Q Consensus       130 ~~~y~~li~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~  209 (441)
                      ..+|..+-..|.+.|++++|.+.|++..+..|.              ++.+|..+-.++.+.|++++|++.|++.-...+
T Consensus        37 a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~--------------~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p  102 (259)
T d1xnfa_          37 AQLLYERGVLYDSLGLRALARNDFSQALAIRPD--------------MPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDP  102 (259)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC--------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCC--------------CHHHHhhhchHHHHHHHHHHhhhhhhHHHHHHh
Confidence            346767778888899999999999998886533              678888899999999999999999988854444


Q ss_pred             CcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 036107          210 LSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVM  289 (441)
Q Consensus       210 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll  289 (441)
                      -+..++..+..+|...|++++|.+.|++..+.. +.+......+..++.+.+..+.+..+..........+.  .++ ++
T Consensus       103 ~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-~~  178 (259)
T d1xnfa_         103 TYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD-PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQW--GWN-IV  178 (259)
T ss_dssp             TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSCCCST--HHH-HH
T ss_pred             hhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhc-cccHHHHHHHHHHHHHhhhHHHHHHHHHHhhccchhhh--hhh-HH
Confidence            556678888888899999999999998887643 12344444444455555655555555555554322221  111 22


Q ss_pred             HHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCccchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCH
Q 036107          290 HALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDC  368 (441)
Q Consensus       290 ~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~  368 (441)
                      ..+.  +..... ..+........ .....-....         .+|..+-..|...|++++|++.|++....  .|+.
T Consensus       179 ~~~~--~~~~~~-~~~~~~~~~~~-~~~~~~~~~~---------~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~  242 (259)
T d1xnfa_         179 EFYL--GNISEQ-TLMERLKADAT-DNTSLAEHLS---------ETNFYLGKYYLSLGDLDSATALFKLAVAN--NVHN  242 (259)
T ss_dssp             HHHT--TSSCHH-HHHHHHHHHCC-SHHHHHHHHH---------HHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CCTT
T ss_pred             HHHH--HHHHHH-HHHHHHHHHHH-HhhhcCcccH---------HHHHHHHHHHHHCCCHHHHHHHHHHHHHc--CCCC
Confidence            2222  221111 11222211110 0000000001         23666777888889999999999987753  5654

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.41  E-value=2.4e-06  Score=76.31  Aligned_cols=157  Identities=4%  Similarity=-0.143  Sum_probs=107.3

Q ss_pred             HHHHHHHHHcCCChhHHHHHHHHHHHhcCCCccHHHHHHHHhhcCHHHHHH---HHHH-------HHhcCCHHHHHHHHH
Q 036107          133 YNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSV---LMDT-------LVKRNSVAHAYKVFL  202 (441)
Q Consensus       133 y~~li~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~---li~~-------~~~~g~~~~a~~~~~  202 (441)
                      ++.++....+.+..++|++++++..+..|.              +...|+.   ++..       +...|++++|+.+++
T Consensus        32 ~~~~~~~~~~~~~~~~al~~~~~~l~~~P~--------------~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~   97 (334)
T d1dcea1          32 TQAVFQKRQAGELDESVLELTSQILGANPD--------------FATLWNCRREVLQHLETEKSPEESAALVKAELGFLE   97 (334)
T ss_dssp             HHHHHHHHHTTCCSHHHHHHHHHHHHHCTT--------------CHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcccccHHHHHHHHHHHHHCCC--------------cHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHH
Confidence            444444444445568999999998876533              2333322   2222       334456788998888


Q ss_pred             HhhhCCCCcHHHHHHHHHHHHhcC--CHHHHHHHHHHHhhCCCCCCHhhHHHHH-HHHHhcCCHHHHHHHHHHHHHcCCC
Q 036107          203 KFKDCISLSSQIFDVLIHGWCKTR--KSDYAQKAMKEMFQHGFSPDGVSYTCFI-EHYCREKDFRKVDYTLKEMQEKGCK  279 (441)
Q Consensus       203 ~~~~~~~~~~~~~~~li~~~~~~~--~~~~a~~~~~~m~~~g~~p~~~~~~~li-~~~~~~g~~~~a~~l~~~m~~~g~~  279 (441)
                      ..-...+-+...|..+..++...+  ++++|...+++..+.. +++...+...+ ..+...+.+++|+..++...+....
T Consensus        98 ~~l~~~pk~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~p~  176 (334)
T d1dcea1          98 SCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS  176 (334)
T ss_dssp             HHHHHCTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCC
T ss_pred             HHHHhCCCcHHHHHHhhHHHHHhccccHHHHHHHHHHHHhhC-chhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcCCC
Confidence            875555667777877777776665  5889999999988742 23455554444 5666789999999999988776543


Q ss_pred             CCHHHHHHHHHHHHhcCCHHHHHHHH
Q 036107          280 PSVITCTIVMHALEKAKQIYEALKVY  305 (441)
Q Consensus       280 p~~~~~~~ll~~~~~~~~~~~a~~~~  305 (441)
                       +...|+.+-..+.+.|++++|...+
T Consensus       177 -~~~a~~~l~~~~~~~~~~~~A~~~~  201 (334)
T d1dcea1         177 -NYSSWHYRSCLLPQLHPQPDSGPQG  201 (334)
T ss_dssp             -CHHHHHHHHHHHHHHSCCCCSSSCC
T ss_pred             -CHHHHHHHHHHHHHhcCHHHHHHHH
Confidence             7888988989999999887664433

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=98.30  E-value=5.9e-05  Score=63.97  Aligned_cols=132  Identities=10%  Similarity=-0.066  Sum_probs=101.8

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC-CHhhHHHHHHH
Q 036107          178 TRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSP-DGVSYTCFIEH  256 (441)
Q Consensus       178 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~  256 (441)
                      ..++..+-..|.+.|++++|.+.|++.-.-.+-+..+|+.+-.+|.+.|++++|.+.|++..+.  .| +..+|..+...
T Consensus        37 a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~  114 (259)
T d1xnfa_          37 AQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLEL--DPTYNYAHLNRGIA  114 (259)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHhhhchHHHHHHHHHHhhhhhhHHHHH--HhhhhhhHHHHHHH
Confidence            4566777788999999999999999875544567888999999999999999999999999874  34 35678888889


Q ss_pred             HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCC
Q 036107          257 YCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDD  312 (441)
Q Consensus       257 ~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g  312 (441)
                      +...|++++|...|+...+... .+......+..++.+.+..+....+........
T Consensus       115 ~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (259)
T d1xnfa_         115 LYYGGRDKLAQDDLLAFYQDDP-NDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSD  169 (259)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSC
T ss_pred             HHHHhhHHHHHHHHHHHHhhcc-ccHHHHHHHHHHHHHhhhHHHHHHHHHHhhccc
Confidence            9999999999999999877642 245554455555666666666666666665543

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.16  E-value=7e-05  Score=60.61  Aligned_cols=126  Identities=14%  Similarity=0.020  Sum_probs=102.5

Q ss_pred             HHHHhcCCHHHHHHHHHHhhhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHH
Q 036107          186 DTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRK  265 (441)
Q Consensus       186 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~  265 (441)
                      ..+...|+++.|++.|+.+.   .|+..+|..+-.+|.+.|++++|.+.|++..+.. +-+...|..+-.++.+.|++++
T Consensus        13 ~~~~~~~d~~~Al~~~~~i~---~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ld-p~~~~a~~~~g~~~~~~g~~~~   88 (192)
T d1hh8a_          13 VLAADKKDWKGALDAFSAVQ---DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEKYDL   88 (192)
T ss_dssp             HHHHHTTCHHHHHHHHHTSS---SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHCCCHHHHHHHHHhcC---CCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHh-hhhhhhHHHHHHHHHhhccHHH
Confidence            35677899999999998764   4677889999999999999999999999998743 2356788999999999999999


Q ss_pred             HHHHHHHHHHc------------CC--CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC
Q 036107          266 VDYTLKEMQEK------------GC--KPS-VITCTIVMHALEKAKQIYEALKVYEKMKSDDCLT  315 (441)
Q Consensus       266 a~~l~~~m~~~------------g~--~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~  315 (441)
                      |.+.|++..+.            |.  +++ ..++..+-.++.+.|++++|.+.+....+....+
T Consensus        89 A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~~~  153 (192)
T d1hh8a_          89 AIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP  153 (192)
T ss_dssp             HHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG
T ss_pred             HHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence            99999987642            11  111 3566677788999999999999999988765554

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.15  E-value=7.8e-05  Score=60.33  Aligned_cols=142  Identities=7%  Similarity=-0.122  Sum_probs=104.7

Q ss_pred             HHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH
Q 036107          219 IHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQI  298 (441)
Q Consensus       219 i~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~  298 (441)
                      -..+...|+++.|++.|.+..    +|+..+|..+-.+|...|++++|++.|++..+... -+...|..+-.+|.+.|++
T Consensus        12 g~~~~~~~d~~~Al~~~~~i~----~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp-~~~~a~~~~g~~~~~~g~~   86 (192)
T d1hh8a_          12 GVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDK-HLAVAYFQRGMLYYQTEKY   86 (192)
T ss_dssp             HHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHCCCHHHHHHHHHhcC----CCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhh-hhhhhHHHHHHHHHhhccH
Confidence            345678899999999998753    47888999999999999999999999999988653 3688999999999999999


Q ss_pred             HHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCcc------chHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHH
Q 036107          299 YEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRF------LIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHA  372 (441)
Q Consensus       299 ~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~------~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~  372 (441)
                      ++|.+.|+......-. +...      .+...|..      .++..+-..+.+.|++++|.+.|.........|......
T Consensus        87 ~~A~~~~~kAl~~~~~-n~~~------~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~~~~~~~~~  159 (192)
T d1hh8a_          87 DLAIKDLKEALIQLRG-NQLI------DYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPRHSKID  159 (192)
T ss_dssp             HHHHHHHHHHHHTTTT-CSEE------ECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSGGGGHHH
T ss_pred             HHHHHHHHHHHHhCcc-CchH------HHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcchHHHH
Confidence            9999999987653211 1000      00000000      235566778899999999999998877654444333333

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.10  E-value=0.0003  Score=60.86  Aligned_cols=184  Identities=7%  Similarity=-0.096  Sum_probs=127.9

Q ss_pred             CChHHHHHHHhhhhhHhhhhcCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHhcCCCccHHHHHHHHhhcCHHHHH
Q 036107          103 PSPDKVVEALKCFCFTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMS  182 (441)
Q Consensus       103 ~~~g~~~~A~~~~~~~~~~~~~g~~p~~~~y~~li~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~  182 (441)
                      ...+++++|.++|                  ...-..|...+++++|.+.|++............        .-..+|.
T Consensus        28 ~~~~~~~~Aa~~y------------------~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~--------~~a~~~~   81 (290)
T d1qqea_          28 SDSYKFEEAADLC------------------VQAATIYRLRKELNLAGDSFLKAADYQKKAGNED--------EAGNTYV   81 (290)
T ss_dssp             CSHHHHHHHHHHH------------------HHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHH--------HHHHHHH
T ss_pred             CccccHHHHHHHH------------------HHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCH--------HHHHHHH
Confidence            4455677776655                  3445678899999999999998876421111000        0236788


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHhh----h--CCCCcHHHHHHHHHHHHh-cCCHHHHHHHHHHHhh----CCCCCC-HhhH
Q 036107          183 VLMDTLVKRNSVAHAYKVFLKFK----D--CISLSSQIFDVLIHGWCK-TRKSDYAQKAMKEMFQ----HGFSPD-GVSY  250 (441)
Q Consensus       183 ~li~~~~~~g~~~~a~~~~~~~~----~--~~~~~~~~~~~li~~~~~-~~~~~~a~~~~~~m~~----~g~~p~-~~~~  250 (441)
                      .+..+|.+.|++++|.+.++..-    .  .......++..+...|-. .|++++|.+.|++..+    .+-.+. ..+|
T Consensus        82 ~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~  161 (290)
T d1qqea_          82 EAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCF  161 (290)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHH
Confidence            88999999999999999998752    1  112234456666666644 6999999999988753    222221 3568


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHcCCC-----CCH-HHHHHHHHHHHhcCCHHHHHHHHHHHhhCC
Q 036107          251 TCFIEHYCREKDFRKVDYTLKEMQEKGCK-----PSV-ITCTIVMHALEKAKQIYEALKVYEKMKSDD  312 (441)
Q Consensus       251 ~~li~~~~~~g~~~~a~~l~~~m~~~g~~-----p~~-~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g  312 (441)
                      ..+...+.+.|++++|...|++.......     ... ..+......+...|+++.|.+.++...+..
T Consensus       162 ~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~A~~~~~~~~~~~  229 (290)
T d1qqea_         162 IKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSED  229 (290)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC-
T ss_pred             HHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence            88899999999999999999998765322     121 223445556778899999999999988753

>d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Clathrin heavy chain proximal leg segment
domain: Clathrin heavy chain proximal leg segment
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.06  E-value=0.0015  Score=57.14  Aligned_cols=106  Identities=10%  Similarity=0.017  Sum_probs=45.8

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHH----------------------
Q 036107          181 MSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEM----------------------  238 (441)
Q Consensus       181 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m----------------------  238 (441)
                      -..+.+-|-+.|.++.|..+|..+++        |..++..+.+.++++.|.+++.+.                      
T Consensus        17 ~~~i~~~c~~~~lye~A~~lY~~~~d--------~~rl~~~~v~l~~~~~avd~~~k~~~~~~~k~~~~~l~~~~e~~la   88 (336)
T d1b89a_          17 IQQVGDRCYDEKMYDAAKLLYNNVSN--------FGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLA   88 (336)
T ss_dssp             ------------CTTTHHHHHHHTTC--------HHHHHHHHHTTTCHHHHHHHHHHHTCHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHhCCC--------HHHHHHHHHhhccHHHHHHHHHHcCCHHHHHHHHHHHHhCcHHHHH
Confidence            33444455566666666666655543        555555555555555555444332                      


Q ss_pred             --hhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 036107          239 --FQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKA  295 (441)
Q Consensus       239 --~~~g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~  295 (441)
                        ...+...+......++..|-..|.+++...+++..... -..+...++-++..|++.
T Consensus        89 ~i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~-~~~~~~~~~~L~~lyak~  146 (336)
T d1b89a_          89 QMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTELAILYSKF  146 (336)
T ss_dssp             HHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS-TTCCHHHHHHHHHHHHTT
T ss_pred             HHHHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcC-CccchHHHHHHHHHHHHh
Confidence              11122233333445555555555555555555544322 123444555555555553

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.01  E-value=0.00032  Score=60.64  Aligned_cols=190  Identities=14%  Similarity=0.003  Sum_probs=125.5

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHhhh-----CCCC-cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC----C-CCCCHhh
Q 036107          181 MSVLMDTLVKRNSVAHAYKVFLKFKD-----CISL-SSQIFDVLIHGWCKTRKSDYAQKAMKEMFQH----G-FSPDGVS  249 (441)
Q Consensus       181 ~~~li~~~~~~g~~~~a~~~~~~~~~-----~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----g-~~p~~~~  249 (441)
                      |.-....|...|++++|.+.|.+.-.     +..+ -..+|+.+-.+|.+.|++++|.+.+++..+.    | ......+
T Consensus        40 y~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~  119 (290)
T d1qqea_          40 CVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANF  119 (290)
T ss_dssp             HHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHH
Confidence            33344577888999999999987621     1122 3457888999999999999999999876542    1 1112345


Q ss_pred             HHHHHHHHHh-cCCHHHHHHHHHHHHH----cCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHH
Q 036107          250 YTCFIEHYCR-EKDFRKVDYTLKEMQE----KGCKPS-VITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSL  323 (441)
Q Consensus       250 ~~~li~~~~~-~g~~~~a~~l~~~m~~----~g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l  323 (441)
                      +..+...|.. .|++++|.+.+++..+    .+..+. ..+|..+...+.+.|++++|..+|++............+. .
T Consensus       120 ~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~-~  198 (290)
T d1qqea_         120 KFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWS-L  198 (290)
T ss_dssp             HHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGG-H
T ss_pred             HHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhh-H
Confidence            6666666644 6999999999998753    222222 4567888999999999999999999987753222111100 0


Q ss_pred             HHHHHhcCccchHHHHHHHHHhcCChhHHHHHHHHHHHcCCC-CC---HHHHHHHHHHHHh
Q 036107          324 IFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCK-PD---CETHARSLKMCCH  380 (441)
Q Consensus       324 i~~~~~~g~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~-p~---~~t~~~li~~~~~  380 (441)
                      -         ..+..++..+...|+++.|...+++..+.... ++   ......++.++..
T Consensus       199 ~---------~~~~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~sre~~~l~~l~~a~~~  250 (290)
T d1qqea_         199 K---------DYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNE  250 (290)
T ss_dssp             H---------HHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHT
T ss_pred             H---------HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHh
Confidence            0         11445556677889999999999988754311 11   2345666666554

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.96  E-value=0.00012  Score=53.85  Aligned_cols=87  Identities=9%  Similarity=0.019  Sum_probs=38.4

Q ss_pred             HHhcCCHHHHHHHHHHhhhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHH
Q 036107          188 LVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVD  267 (441)
Q Consensus       188 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~  267 (441)
                      +.+.|++++|+..|++.-...+-+...|..+-.+|.+.|++++|+..+++..+.+ +.+...|..+..++...|++++|+
T Consensus        13 ~~~~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~g~~~~~~~~~~~A~   91 (117)
T d1elwa_          13 ALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAALEFLNRFEEAK   91 (117)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHhcCCcchhhhhcccccccccccccccchhhhhHHHhc-cchhhHHHHHHHHHHHccCHHHHH
Confidence            3344444444444444422223344444444444444444444444444444322 123344444444444444444444


Q ss_pred             HHHHHHHH
Q 036107          268 YTLKEMQE  275 (441)
Q Consensus       268 ~l~~~m~~  275 (441)
                      ..|+...+
T Consensus        92 ~~~~~a~~   99 (117)
T d1elwa_          92 RTYEEGLK   99 (117)
T ss_dssp             HHHHHHHT
T ss_pred             HHHHHHHH
Confidence            44444443

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.89  E-value=3.6e-05  Score=68.38  Aligned_cols=229  Identities=7%  Similarity=-0.067  Sum_probs=152.3

Q ss_pred             CChhHHHHHHHHHHHhcCCCccHHHHHHHHhhcCHHHHHHHHHHHHhcC--CHHHHHHHHHHhhhCCCCcHHHHHHHH-H
Q 036107          144 KKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRN--SVAHAYKVFLKFKDCISLSSQIFDVLI-H  220 (441)
Q Consensus       144 ~~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g--~~~~a~~~~~~~~~~~~~~~~~~~~li-~  220 (441)
                      |++++|+.+++...+..+.              +...|..+..++...+  +.++|...++..-...+.+...+...+ .
T Consensus        87 ~~~~~al~~~~~~l~~~pk--------------~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~  152 (334)
T d1dcea1          87 ALVKAELGFLESCLRVNPK--------------SYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFV  152 (334)
T ss_dssp             HHHHHHHHHHHHHHHHCTT--------------CHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhCCC--------------cHHHHHHhhHHHHHhccccHHHHHHHHHHHHhhCchhhhhhhhHHHH
Confidence            4578899999998875532              5566666666666654  589999999888444455666665444 6


Q ss_pred             HHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH
Q 036107          221 GWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYE  300 (441)
Q Consensus       221 ~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~  300 (441)
                      .+...+.+++|+..++...+... -+...|+.+-..+.+.|++++|...++...+.  .|+   ...+...+...+..++
T Consensus       153 ~~~~~~~~~~Al~~~~~~i~~~p-~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~---~~~~~~~~~~l~~~~~  226 (334)
T d1dcea1         153 AAQAAVAPAEELAFTDSLITRNF-SNYSSWHYRSCLLPQLHPQPDSGPQGRLPENV--LLK---ELELVQNAFFTDPNDQ  226 (334)
T ss_dssp             HHHTCCCHHHHHHHHHTTTTTTC-CCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHH--HHH---HHHHHHHHHHHCSSCS
T ss_pred             HHHhccccHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHhcCHHHHHHHHHHhHHh--HHH---HHHHHHHHHHhcchhH
Confidence            77788999999999999987643 36778888889999999988876655544332  111   1223344566677777


Q ss_pred             HHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCccchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC-CHHHHHHHHHHHH
Q 036107          301 ALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKP-DCETHARSLKMCC  379 (441)
Q Consensus       301 a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~t~~~li~~~~  379 (441)
                      +...+......... +.                ..+..+...+...|+.++|+..+.+....  .| +..++..+...+.
T Consensus       227 a~~~~~~~l~~~~~-~~----------------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~p~~~~~~~~l~~~~~  287 (334)
T d1dcea1         227 SAWFYHRWLLGRAE-PL----------------FRCELSVEKSTVLQSELESCKELQELEPE--NKWCLLTIILLMRALD  287 (334)
T ss_dssp             HHHHHHHHHHSCCC-CS----------------SSCCCCHHHHHHHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHhCcc-hh----------------hHHHHHHHHHHHHhhHHHHHHHHHHHHhh--CchHHHHHHHHHHHHH
Confidence            87777777664321 11                12555566667778888888888876533  33 3346667777888


Q ss_pred             hcCChhhHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHH
Q 036107          380 HKKRMKDGMLVLNLMREMLSKGIVPQES-THKMLAEEL  416 (441)
Q Consensus       380 ~~g~~~~a~~~~~~~~~m~~~~~~p~~~-~~~~ll~~~  416 (441)
                      ..|+.++|.+.++...+     +.|+.. -|..|-..+
T Consensus       288 ~~~~~~eA~~~~~~ai~-----ldP~~~~y~~~L~~~~  320 (334)
T d1dcea1         288 PLLYEKETLQYFSTLKA-----VDPMRAAYLDDLRSKF  320 (334)
T ss_dssp             TGGGHHHHHHHHHHHHH-----HCGGGHHHHHHHHHHH
T ss_pred             HCCCHHHHHHHHHHHHH-----HCcccHHHHHHHHHHH
Confidence            89999999775554444     356433 445444443

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.87  E-value=0.00017  Score=58.41  Aligned_cols=90  Identities=7%  Similarity=-0.032  Sum_probs=46.1

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHhhhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC-CHhhHHHHHHHHHhcC
Q 036107          183 VLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSP-DGVSYTCFIEHYCREK  261 (441)
Q Consensus       183 ~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g  261 (441)
                      -.-..+.+.|++++|+..|+..-...+.+...|+.+-.+|.+.|++++|...|++..+.  .| +..+|..+-.+|.+.|
T Consensus         9 ~~Gn~~~~~g~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l--~p~~~~a~~~lg~~~~~l~   86 (201)
T d2c2la1           9 EQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALEL--DGQSVKAHFFLGQCQLEME   86 (201)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--CTTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHh--CCCcHHHHHHHHHHHHHCC
Confidence            33344555555555555555442222344445555555555555555555555555442  23 2345555555555555


Q ss_pred             CHHHHHHHHHHHH
Q 036107          262 DFRKVDYTLKEMQ  274 (441)
Q Consensus       262 ~~~~a~~l~~~m~  274 (441)
                      ++++|+..|++..
T Consensus        87 ~~~~A~~~~~~al   99 (201)
T d2c2la1          87 SYDEAIANLQRAY   99 (201)
T ss_dssp             CHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHH
Confidence            5555555555543

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.84  E-value=0.00015  Score=58.69  Aligned_cols=99  Identities=15%  Similarity=0.003  Sum_probs=85.2

Q ss_pred             CcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 036107          210 LSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVM  289 (441)
Q Consensus       210 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll  289 (441)
                      |+...+-..-+.|.+.|++++|+..|.+..+.. +-+...|..+-.+|.+.|++++|+..|+...+... -+..+|..+-
T Consensus         2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~-p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p-~~~~a~~~lg   79 (201)
T d2c2la1           2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDG-QSVKAHFFLG   79 (201)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCT-TCHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCC-CcHHHHHHHH
Confidence            666677777889999999999999999988753 34678899999999999999999999999987532 2578899999


Q ss_pred             HHHHhcCCHHHHHHHHHHHhh
Q 036107          290 HALEKAKQIYEALKVYEKMKS  310 (441)
Q Consensus       290 ~~~~~~~~~~~a~~~~~~m~~  310 (441)
                      .+|.+.|++++|...|+...+
T Consensus        80 ~~~~~l~~~~~A~~~~~~al~  100 (201)
T d2c2la1          80 QCQLEMESYDEAIANLQRAYS  100 (201)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHH
Confidence            999999999999999998765

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.83  E-value=0.0003  Score=54.75  Aligned_cols=87  Identities=10%  Similarity=0.025  Sum_probs=39.1

Q ss_pred             HHhcCCHHHHHHHHHHhhhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHH
Q 036107          188 LVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVD  267 (441)
Q Consensus       188 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~  267 (441)
                      |.+.|++++|+..|++.-.-.+-+...|..+-.+|...|++++|.+.|++..+.. +-+...|..+..++...|++++|.
T Consensus        20 ~~~~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~-p~~~~a~~~~g~~~~~~g~~~eA~   98 (159)
T d1a17a_          20 YFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKFRAAL   98 (159)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHcCCHHHHHHHhhhccccchhhhhhhhhhHHHHHhccccchHHHHHHHHHHHc-ccchHHHHHHHHHHHHcCCHHHHH
Confidence            3344444444444444422223344444444444444455555555554444321 112244444444455555555555


Q ss_pred             HHHHHHHH
Q 036107          268 YTLKEMQE  275 (441)
Q Consensus       268 ~l~~~m~~  275 (441)
                      ..+++..+
T Consensus        99 ~~~~~a~~  106 (159)
T d1a17a_          99 RDYETVVK  106 (159)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            55444444

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.83  E-value=0.00046  Score=53.58  Aligned_cols=103  Identities=12%  Similarity=0.025  Sum_probs=84.7

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 036107          218 LIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQ  297 (441)
Q Consensus       218 li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~  297 (441)
                      .-+.|.+.|++++|...|++..+.. +-+...|..+-..|...|++++|...|+...+... -+...|..+..++...|+
T Consensus        16 ~gn~~~~~~~y~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p-~~~~a~~~~g~~~~~~g~   93 (159)
T d1a17a_          16 QANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDK-KYIKGYYRRAASNMALGK   93 (159)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHcCCHHHHHHHhhhccccc-hhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcc-cchHHHHHHHHHHHHcCC
Confidence            4557889999999999999999853 23667888999999999999999999999988643 367899999999999999


Q ss_pred             HHHHHHHHHHHhhCCCCCCHHHHHHH
Q 036107          298 IYEALKVYEKMKSDDCLTDTSFYSSL  323 (441)
Q Consensus       298 ~~~a~~~~~~m~~~g~~~~~~~~~~l  323 (441)
                      +++|...+++..+.. +-+...+..+
T Consensus        94 ~~eA~~~~~~a~~~~-p~~~~~~~~l  118 (159)
T d1a17a_          94 FRAALRDYETVVKVK-PHDKDAKMKY  118 (159)
T ss_dssp             HHHHHHHHHHHHHHS-TTCHHHHHHH
T ss_pred             HHHHHHHHHHHHHcC-CCCHHHHHHH
Confidence            999999999998864 2234444443

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.79  E-value=0.00035  Score=51.15  Aligned_cols=92  Identities=16%  Similarity=0.044  Sum_probs=81.0

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 036107          218 LIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQ  297 (441)
Q Consensus       218 li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~  297 (441)
                      --+.+.+.|++++|...|++..+.. +-+...|..+-.++.+.|++++|+..+....+.+. .+...|..+..++...|+
T Consensus         9 ~g~~~~~~g~~~eAi~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~~g~~~~~~~~   86 (117)
T d1elwa_           9 KGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKP-DWGKGYSRKAAALEFLNR   86 (117)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHhcC-CcchhhhhcccccccccccccccchhhhhHHHhcc-chhhHHHHHHHHHHHccC
Confidence            3566888999999999999998753 33567899999999999999999999999988754 478899999999999999


Q ss_pred             HHHHHHHHHHHhhC
Q 036107          298 IYEALKVYEKMKSD  311 (441)
Q Consensus       298 ~~~a~~~~~~m~~~  311 (441)
                      +++|...|+...+.
T Consensus        87 ~~~A~~~~~~a~~~  100 (117)
T d1elwa_          87 FEEAKRTYEEGLKH  100 (117)
T ss_dssp             HHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHh
Confidence            99999999999975

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.66  E-value=0.00022  Score=52.68  Aligned_cols=94  Identities=15%  Similarity=0.089  Sum_probs=54.2

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHhhhCCCCcHHHHHHHHHHHHhcCC---HHHHHHHHHHHhhCCCCCC-HhhHHHHHHHHH
Q 036107          183 VLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRK---SDYAQKAMKEMFQHGFSPD-GVSYTCFIEHYC  258 (441)
Q Consensus       183 ~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~---~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~  258 (441)
                      .+++.+...+++++|++.|+..-..-+.+..++..+-.++.+.++   +++|.++|++....+..|+ ..+|..+-.+|.
T Consensus         4 ~l~n~~~~~~~l~~Ae~~Y~~aL~~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y~   83 (122)
T d1nzna_           4 AVLNELVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNY   83 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhcCHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHH
Confidence            455556666666666666666544344555666666666655443   3346666666655432222 124555666666


Q ss_pred             hcCCHHHHHHHHHHHHHc
Q 036107          259 REKDFRKVDYTLKEMQEK  276 (441)
Q Consensus       259 ~~g~~~~a~~l~~~m~~~  276 (441)
                      +.|++++|.+.|++..+.
T Consensus        84 ~~g~~~~A~~~~~~aL~~  101 (122)
T d1nzna_          84 RLKEYEKALKYVRGLLQT  101 (122)
T ss_dssp             HTTCHHHHHHHHHHHHHH
T ss_pred             HHhhhHHHHHHHHHHHHh
Confidence            666666666666666653

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=97.66  E-value=0.00019  Score=52.19  Aligned_cols=85  Identities=8%  Similarity=-0.040  Sum_probs=46.0

Q ss_pred             HHHcCCChhHHHHHHHHHHHhcCCCccHHHHHHHHhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcHHHHHHH
Q 036107          139 ALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVL  218 (441)
Q Consensus       139 ~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l  218 (441)
                      .+.+.|++++|...|++.....|.              +..+|..+-.++.+.|++++|+..|+..-...+.+...|..+
T Consensus        25 ~~~~~g~~~~A~~~~~~al~~~p~--------------~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l   90 (112)
T d1hxia_          25 SMLKLANLAEAALAFEAVCQKEPE--------------REEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAAL   90 (112)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHSTT--------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             HHHHHhhhHHHHHHHhhhcccccc--------------cchhhhhhhhhhhhhhhHHHhhcccccccccccccccchHHH
Confidence            344556666666666665554321              445555555555555666666655555433333445555555


Q ss_pred             HHHHHhcCCHHHHHHHHHH
Q 036107          219 IHGWCKTRKSDYAQKAMKE  237 (441)
Q Consensus       219 i~~~~~~~~~~~a~~~~~~  237 (441)
                      ...|...|++++|.+.|++
T Consensus        91 a~~y~~~g~~~~A~~~l~~  109 (112)
T d1hxia_          91 AVSHTNEHNANAALASLRA  109 (112)
T ss_dssp             HHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHHH
Confidence            5555555555555555554

>d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Clathrin heavy chain proximal leg segment
domain: Clathrin heavy chain proximal leg segment
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.61  E-value=0.018  Score=50.06  Aligned_cols=280  Identities=7%  Similarity=0.039  Sum_probs=139.8

Q ss_pred             CCCCcccccchhhHHHhhhhchhhHHHHHhhhcCchhhHHHHHHHHHhcCCChHHHHHHHhhhhhHhhhhcCCCCCCHHH
Q 036107           53 SPDEDFVIPSLASWVESLKLNEQSRISSHALSEDHETDVDKVSEILRKRYPSPDKVVEALKCFCFTWAKTQTGYMHTPET  132 (441)
Q Consensus        53 ~p~~~~~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~g~~p~~~~  132 (441)
                      .|+..-...+.+-|-+.|..+.|..++..+...+      .+.+.+    .+.++...|.+++.   ..      -+..+
T Consensus        11 ~~n~~d~~~i~~~c~~~~lye~A~~lY~~~~d~~------rl~~~~----v~l~~~~~avd~~~---k~------~~~~~   71 (336)
T d1b89a_          11 GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFG------RLASTL----VHLGEYQAAVDGAR---KA------NSTRT   71 (336)
T ss_dssp             CC----------------CTTTHHHHHHHTTCHH------HHHHHH----HTTTCHHHHHHHHH---HH------TCHHH
T ss_pred             CCCcCCHHHHHHHHHHCCCHHHHHHHHHhCCCHH------HHHHHH----HhhccHHHHHHHHH---Hc------CCHHH
Confidence            3555566666777777788888888877443322      333333    33455555655552   11      15678


Q ss_pred             HHHHHHHHHcCCChhHHHHHHHHHHHhcCCCccHHHHHHHHhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcH
Q 036107          133 YNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSS  212 (441)
Q Consensus       133 y~~li~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~  212 (441)
                      |..+...+.+......|.-     .... .            ..++.....++..|-..|.+++...+++..-..-..+.
T Consensus        72 ~k~~~~~l~~~~e~~la~i-----~~~~-~------------~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~~~~~~  133 (336)
T d1b89a_          72 WKEVCFACVDGKEFRLAQM-----CGLH-I------------VVHADELEELINYYQDRGYFEELITMLEAALGLERAHM  133 (336)
T ss_dssp             HHHHHHHHHHTTCHHHHHH-----TTTT-T------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCH
T ss_pred             HHHHHHHHHhCcHHHHHHH-----HHHH-h------------hcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcCCccch
Confidence            8888888877766544311     1111 1            11555566778888888888888888876533335666


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC--------CCCCHHH
Q 036107          213 QIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKG--------CKPSVIT  284 (441)
Q Consensus       213 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g--------~~p~~~~  284 (441)
                      ..++-++..|++.+ .++..+.+....      +..-...++..|-+.+-+.++.-++..+.+..        ..+++.-
T Consensus       134 ~~~~~L~~lyak~~-~~kl~e~l~~~s------~~y~~~k~~~~c~~~~l~~elv~Ly~~~~~~~~A~~~~i~~~~~~~~  206 (336)
T d1b89a_         134 GMFTELAILYSKFK-PQKMREHLELFW------SRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWK  206 (336)
T ss_dssp             HHHHHHHHHHHTTC-HHHHHHHHHHHS------TTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHHHHSTTTTCC
T ss_pred             HHHHHHHHHHHHhC-hHHHHHHHHhcc------ccCCHHHHHHHHHHcCChHHHHHHHHhcCCHHHHHHHHHHcchhhhh
Confidence            77888888888864 334333333321      12223344555555555555555555442210        1112222


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCccchHHHHHHHHHhcCChhHHHHHHHHHHHcCC
Q 036107          285 CTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSC  364 (441)
Q Consensus       285 ~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~  364 (441)
                      ....+..+.+..+++...++.....+.  .|  ...+.++......-+   -..++.-+-+.+++......++...+.| 
T Consensus       207 ~~~f~e~~~k~~N~e~~~~~i~~yL~~--~p--~~i~~lL~~v~~~~d---~~r~V~~~~k~~~l~li~p~Le~v~~~n-  278 (336)
T d1b89a_         207 EGQFKDIITKVANVELYYRAIQFYLEF--KP--LLLNDLLMVLSPRLD---HTRAVNYFSKVKQLPLVKPYLRSVQNHN-  278 (336)
T ss_dssp             HHHHHHHHHHCSSTHHHHHHHHHHHHH--CG--GGHHHHHHHHGGGCC---HHHHHHHHHHTTCTTTTHHHHHHHHTTC-
T ss_pred             HHHHHHHHHccCChHHHHHHHHHHHHc--CH--HHHHHHHHHhccCCC---HHHHHHHHHhcCCcHHHHHHHHHHHHcC-
Confidence            233444455666665555555544432  22  222333333333322   3445555556666666666665554444 


Q ss_pred             CCCHHHHHHHHHHHHhcCChhh
Q 036107          365 KPDCETHARSLKMCCHKKRMKD  386 (441)
Q Consensus       365 ~p~~~t~~~li~~~~~~g~~~~  386 (441)
                        +....+++...|...++++.
T Consensus       279 --~~~vn~al~~lyie~~d~~~  298 (336)
T d1b89a_         279 --NKSVNESLNNLFITEEDYQA  298 (336)
T ss_dssp             --CHHHHHHHHHHHHHTTCHHH
T ss_pred             --hHHHHHHHHHHHhCcchhHH
Confidence              23456666666666666544

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.58  E-value=0.00096  Score=52.86  Aligned_cols=123  Identities=7%  Similarity=-0.038  Sum_probs=71.7

Q ss_pred             HHHHHHHcCCChhHHHHHHHHHHHhcCCCccHHHHHHHHhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcHHH
Q 036107          135 AMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQI  214 (441)
Q Consensus       135 ~li~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~  214 (441)
                      ..-......|++++|.+.|.+....-++.+..          +             ....+.+...-..+..   .....
T Consensus        16 ~~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~----------~-------------~~~~~w~~~~r~~l~~---~~~~a   69 (179)
T d2ff4a2          16 TAGVHAAAAGRFEQASRHLSAALREWRGPVLD----------D-------------LRDFQFVEPFATALVE---DKVLA   69 (179)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTG----------G-------------GTTSTTHHHHHHHHHH---HHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHhhCcccccc----------c-------------CcchHHHHHHHHHHHH---HHHHH
Confidence            33356778899999999999988753222210          0             0000011111111111   12234


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHH-----HcCCCCCHHH
Q 036107          215 FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQ-----EKGCKPSVIT  284 (441)
Q Consensus       215 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~-----~~g~~p~~~~  284 (441)
                      +..+...+.+.|++++|...+++..+.. +-+...|..++.++.+.|+..+|++.|+++.     +.|+.|+..+
T Consensus        70 ~~~la~~~~~~g~~~~Al~~~~~al~~~-P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l  143 (179)
T d2ff4a2          70 HTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL  143 (179)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred             HHHHHHHHHHCCCchHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHHH
Confidence            5666777777777777777777776532 2355677777777777777777777777763     2477777554

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=97.49  E-value=0.00044  Score=50.13  Aligned_cols=84  Identities=10%  Similarity=0.005  Sum_probs=39.5

Q ss_pred             HHHhcCCHHHHHHHHHHHhhCCCCC-CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHH
Q 036107          221 GWCKTRKSDYAQKAMKEMFQHGFSP-DGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIY  299 (441)
Q Consensus       221 ~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~  299 (441)
                      .+.+.|++++|...|++.....  | +...|..+-.++.+.|++++|...|++..+... -+...|..+...|...|+++
T Consensus        25 ~~~~~g~~~~A~~~~~~al~~~--p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~a~~~la~~y~~~g~~~  101 (112)
T d1hxia_          25 SMLKLANLAEAALAFEAVCQKE--PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDP-KDIAVHAALAVSHTNEHNAN  101 (112)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhhhHHHHHHHhhhcccc--cccchhhhhhhhhhhhhhhHHHhhccccccccccc-ccccchHHHHHHHHHCCCHH
Confidence            3444455555555555544421  2 244444444455555555555555555444321 13444444555555555555


Q ss_pred             HHHHHHHH
Q 036107          300 EALKVYEK  307 (441)
Q Consensus       300 ~a~~~~~~  307 (441)
                      +|.+.+++
T Consensus       102 ~A~~~l~~  109 (112)
T d1hxia_         102 AALASLRA  109 (112)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            55555444

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.34  E-value=0.00047  Score=50.84  Aligned_cols=100  Identities=12%  Similarity=-0.049  Sum_probs=77.4

Q ss_pred             HHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCCCCH-HHHHHHHHH
Q 036107          337 NTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQE-STHKMLAEE  415 (441)
Q Consensus       337 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~~~~m~~~~~~p~~-~~~~~ll~~  415 (441)
                      ..+++.+...+++++|.+.|++....+ ..+..++..+-.++.+.++.+...+..+++++....+..|+. ..+..|-.+
T Consensus         3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~~-p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~   81 (122)
T d1nzna_           3 EAVLNELVSVEDLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVG   81 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHhcCHHHHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHH
Confidence            467788888999999999999988754 456678888888888877776655556678886554444443 367788889


Q ss_pred             HHhcCCccHHHHHHHHHHHHhh
Q 036107          416 LEKKSLGNAKERIDELLTHATE  437 (441)
Q Consensus       416 ~~~~g~~~~a~~~~~~m~~~~~  437 (441)
                      |.+.|++++|.+.|+...+...
T Consensus        82 y~~~g~~~~A~~~~~~aL~~~P  103 (122)
T d1nzna_          82 NYRLKEYEKALKYVRGLLQTEP  103 (122)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCT
T ss_pred             HHHHhhhHHHHHHHHHHHHhCc
Confidence            9999999999999999876554

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.31  E-value=0.0029  Score=49.93  Aligned_cols=117  Identities=9%  Similarity=-0.056  Sum_probs=84.1

Q ss_pred             HHHHhcCCHHHHHHHHHHhhh---C-CCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcC
Q 036107          186 DTLVKRNSVAHAYKVFLKFKD---C-ISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREK  261 (441)
Q Consensus       186 ~~~~~~g~~~~a~~~~~~~~~---~-~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g  261 (441)
                      ......|++++|.+.|...-.   | ..++..           .+.+  +...-..+..    .....+..+...+.+.|
T Consensus        19 ~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~~~-----------~~~w--~~~~r~~l~~----~~~~a~~~la~~~~~~g   81 (179)
T d2ff4a2          19 VHAAAAGRFEQASRHLSAALREWRGPVLDDLR-----------DFQF--VEPFATALVE----DKVLAHTAKAEAEIACG   81 (179)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGT-----------TSTT--HHHHHHHHHH----HHHHHHHHHHHHHHHTT
T ss_pred             HHHHHCCCHHHHHHHHHHHHhhCcccccccCc-----------chHH--HHHHHHHHHH----HHHHHHHHHHHHHHHCC
Confidence            466788999999999987522   2 111110           0111  1111112211    12456788999999999


Q ss_pred             CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHh-----hCCCCCCHHHH
Q 036107          262 DFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMK-----SDDCLTDTSFY  320 (441)
Q Consensus       262 ~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~-----~~g~~~~~~~~  320 (441)
                      ++++|...++...+..- -+...|..++.+|.+.|+.++|.+.|+++.     +.|+.|+..+-
T Consensus        82 ~~~~Al~~~~~al~~~P-~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l~  144 (179)
T d2ff4a2          82 RASAVIAELEALTFEHP-YREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLR  144 (179)
T ss_dssp             CHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHH
T ss_pred             CchHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHHHH
Confidence            99999999999988643 488999999999999999999999999974     36999987653

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.27  E-value=0.0059  Score=47.63  Aligned_cols=110  Identities=12%  Similarity=-0.041  Sum_probs=52.0

Q ss_pred             HHHHHHHHHHHcCCChhHHHHHHHHHHHhcCCCccH-HHHHHHHhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCC
Q 036107          131 ETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSL-AAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCIS  209 (441)
Q Consensus       131 ~~y~~li~~~~~~~~~~~a~~l~~~m~~~~~~~~~~-~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~  209 (441)
                      ..+...-..+.+.|++++|++.|++.....+..... ..........-..+|+.+..+|.+.|++++|+..++..-..-+
T Consensus        14 ~~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~~~~A~~~~~~al~~~p   93 (170)
T d1p5qa1          14 TIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDS   93 (170)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHHhhhhcccccchhhhhhhccc
Confidence            345555567888999999999999887653222110 0000000001122333344444444444444444444322222


Q ss_pred             CcHHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 036107          210 LSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQ  240 (441)
Q Consensus       210 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~  240 (441)
                      .+...|..+..+|...|++++|...|++..+
T Consensus        94 ~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~  124 (170)
T d1p5qa1          94 NNEKGLSRRGEAHLAVNDFELARADFQKVLQ  124 (170)
T ss_dssp             TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             cchhhhHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence            3444444444444444444444444444443

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.21  E-value=0.0083  Score=46.72  Aligned_cols=96  Identities=11%  Similarity=-0.025  Sum_probs=67.1

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHhhh------CCCC---------cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC
Q 036107          181 MSVLMDTLVKRNSVAHAYKVFLKFKD------CISL---------SSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSP  245 (441)
Q Consensus       181 ~~~li~~~~~~g~~~~a~~~~~~~~~------~~~~---------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p  245 (441)
                      +.-.-..+.+.|++++|.+.|.+.-.      ....         -..+|+.+-.+|.+.|++++|++.++...... +-
T Consensus        16 l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~~~~A~~~~~~al~~~-p~   94 (170)
T d1p5qa1          16 VKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELD-SN   94 (170)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TT
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHHhhhhcccccchhhhhhhcc-cc
Confidence            33344577889999999999976521      1111         12346666777788888888888888877642 12


Q ss_pred             CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 036107          246 DGVSYTCFIEHYCREKDFRKVDYTLKEMQEKG  277 (441)
Q Consensus       246 ~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g  277 (441)
                      ++..|..+..++...|++++|...|++..+..
T Consensus        95 ~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~  126 (170)
T d1p5qa1          95 NEKGLSRRGEAHLAVNDFELARADFQKVLQLY  126 (170)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             chhhhHHHHHHHHHhhhHHHHHHHHHHHHHhC
Confidence            66777778888888888888888888877753

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.20  E-value=0.0044  Score=45.75  Aligned_cols=108  Identities=11%  Similarity=0.025  Sum_probs=77.7

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHh
Q 036107          250 YTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSK  329 (441)
Q Consensus       250 ~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~  329 (441)
                      +-.+-..+.+.|++++|+..|++..+.+. .+...|..+-.+|.+.|++++|.+.++.+.+.... +...+..+..    
T Consensus         7 ~k~~G~~~~~~~~y~~Ai~~y~~al~~~p-~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~-~~~~~~~~a~----   80 (128)
T d1elra_           7 EKELGNDAYKKKDFDTALKHYDKAKELDP-TNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRE-NREDYRQIAK----   80 (128)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH-STTCHHHHHH----
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCc-ccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcc-cHHHHHHHHH----
Confidence            34456678889999999999999888643 36888999999999999999999999988763211 1111222222    


Q ss_pred             cCccchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHH
Q 036107          330 AVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCET  370 (441)
Q Consensus       330 ~g~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t  370 (441)
                           +|..+-..+...+++++|++.|++-...  .|+...
T Consensus        81 -----~~~~lg~~~~~~~~~~~A~~~~~kal~~--~~~~~~  114 (128)
T d1elra_          81 -----AYARIGNSYFKEEKYKDAIHFYNKSLAE--HRTPDV  114 (128)
T ss_dssp             -----HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHH
T ss_pred             -----HHHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCHHH
Confidence                 2666777788889999999999887653  344433

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.16  E-value=0.0024  Score=47.23  Aligned_cols=91  Identities=10%  Similarity=0.101  Sum_probs=57.2

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHhhhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC--------HhhHHHHH
Q 036107          183 VLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPD--------GVSYTCFI  254 (441)
Q Consensus       183 ~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~--------~~~~~~li  254 (441)
                      .+-..+.+.|++++|++.|++.-+-.+.+...+..+-.+|.+.|++++|.+.+++..+.  .|+        ..+|..+-
T Consensus         9 ~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l--~~~~~~~~~~~a~~~~~lg   86 (128)
T d1elra_           9 ELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEV--GRENREDYRQIAKAYARIG   86 (128)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--HHHSTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHHH
Confidence            34456667777777777777664434456666777777777777777777777776542  111        13455555


Q ss_pred             HHHHhcCCHHHHHHHHHHHHH
Q 036107          255 EHYCREKDFRKVDYTLKEMQE  275 (441)
Q Consensus       255 ~~~~~~g~~~~a~~l~~~m~~  275 (441)
                      ..+...+++++|...|+.-..
T Consensus        87 ~~~~~~~~~~~A~~~~~kal~  107 (128)
T d1elra_          87 NSYFKEEKYKDAIHFYNKSLA  107 (128)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHhCCHHHHHHHHHHHHh
Confidence            566666677777777766544

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=97.11  E-value=0.011  Score=45.04  Aligned_cols=112  Identities=9%  Similarity=-0.114  Sum_probs=59.8

Q ss_pred             HHHHHHHHHHcCCChhHHHHHHHHHHHhcCCCccHHHHHHHHhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCc
Q 036107          132 TYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLS  211 (441)
Q Consensus       132 ~y~~li~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~  211 (441)
                      .+..--..+.+.|++.+|+..|.+....-+.....         .+....                    ....   ...
T Consensus        19 ~~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~---------~~~~~~--------------------~~~~---~~~   66 (153)
T d2fbna1          19 DIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEW---------DDQILL--------------------DKKK---NIE   66 (153)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTC---------CCHHHH--------------------HHHH---HHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCcchhhh---------hhHHHH--------------------Hhhh---hHH
Confidence            44445567778999999999999877633111100         000000                    0000   011


Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 036107          212 SQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEK  276 (441)
Q Consensus       212 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~  276 (441)
                      ..+|+.+..+|.+.|++++|++.+++..+.. +.++.+|..+..++...|++++|...|+...+.
T Consensus        67 ~~~~~Nla~~~~~l~~~~~Al~~~~~al~~~-p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l  130 (153)
T d2fbna1          67 ISCNLNLATCYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASL  130 (153)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHhhHHHHHHHhcccchhhhhhhcccccc-chhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHh
Confidence            2245555555666666666666666655432 224455666666666666666666666665554

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=97.03  E-value=0.00089  Score=56.70  Aligned_cols=121  Identities=12%  Similarity=-0.005  Sum_probs=59.4

Q ss_pred             HcCCChhHHHHHHHHHHHhcCCCccHHHHHHHHhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcHHHHHHHHH
Q 036107          141 GKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIH  220 (441)
Q Consensus       141 ~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~  220 (441)
                      .+.|++++|++.+++..+..|.              |...+..+...++..|++++|...++...+..+-+...+..+..
T Consensus         7 L~~G~l~eAl~~l~~al~~~P~--------------d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~~~~~l~~   72 (264)
T d1zbpa1           7 LSEGQLQQALELLIEAIKASPK--------------DASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRH   72 (264)
T ss_dssp             TTTTCHHHHHHHHHHHHHTCTT--------------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHH
T ss_pred             HHCCCHHHHHHHHHHHHHHCCC--------------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence            4557777777777776664422              66677777777777777777777776663322223333333333


Q ss_pred             HHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 036107          221 GWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQE  275 (441)
Q Consensus       221 ~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~  275 (441)
                      .+...+..+++..-...-...+-+++...+......+...|+.++|.+++++..+
T Consensus        73 ll~a~~~~~~a~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e  127 (264)
T d1zbpa1          73 LVKAAQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEE  127 (264)
T ss_dssp             HHHHHHHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHhccccHHHHHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHh
Confidence            3222222222111111000111111222333334445566667777666666654

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=96.92  E-value=0.022  Score=43.27  Aligned_cols=65  Identities=17%  Similarity=-0.021  Sum_probs=57.7

Q ss_pred             HhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCC
Q 036107          247 GVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDD  312 (441)
Q Consensus       247 ~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g  312 (441)
                      ..+|+.+..+|.+.|++++|++.++...+.. +.+..+|..+..++...|++++|...|+...+..
T Consensus        67 ~~~~~Nla~~~~~l~~~~~Al~~~~~al~~~-p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~  131 (153)
T d2fbna1          67 ISCNLNLATCYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASLN  131 (153)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred             HHHHhhHHHHHHHhcccchhhhhhhcccccc-chhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhC
Confidence            3477888899999999999999999988864 3478999999999999999999999999998854

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=96.91  E-value=0.035  Score=42.80  Aligned_cols=110  Identities=11%  Similarity=-0.097  Sum_probs=56.0

Q ss_pred             HHHHHHHHHHHcCCChhHHHHHHHHHHHhcCCCccH-HHHHHHHhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCC
Q 036107          131 ETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSL-AAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCIS  209 (441)
Q Consensus       131 ~~y~~li~~~~~~~~~~~a~~l~~~m~~~~~~~~~~-~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~  209 (441)
                      ..+...-..+.+.|++.+|...|.+....-+..... ..............|..+-.+|.+.|++++|+..++..-...+
T Consensus        16 ~~~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p   95 (168)
T d1kt1a1          16 AIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDS   95 (168)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhccchhhhhhcchhHHHHHHhHHHHHHHhhhcccchhhhhhhhhccc
Confidence            456666677888999999999998866532111110 0000000111123333444445555555555555555433333


Q ss_pred             CcHHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 036107          210 LSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQ  240 (441)
Q Consensus       210 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~  240 (441)
                      .+...|..+..+|...|++++|...|++..+
T Consensus        96 ~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~  126 (168)
T d1kt1a1          96 ANEKGLYRRGEAQLLMNEFESAKGDFEKVLE  126 (168)
T ss_dssp             TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            4444555555555555555555555555544

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=96.70  E-value=0.12  Score=42.64  Aligned_cols=225  Identities=13%  Similarity=0.046  Sum_probs=134.8

Q ss_pred             CHHHHHHHHHHHHcCCChhHHHHHHHHHHHhcCCCccHHHHHHHHhhcCHHHHHHHHHHHHh----cCCHHHHHHHHHHh
Q 036107          129 TPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVK----RNSVAHAYKVFLKF  204 (441)
Q Consensus       129 ~~~~y~~li~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~~  204 (441)
                      |+..+..+-..+.+.+++++|++.|++..+.+                +...+-.|-..|..    ..+...|...+...
T Consensus         1 ~p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g----------------~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a   64 (265)
T d1ouva_           1 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK----------------ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKA   64 (265)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT----------------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC----------------CHHHHHHHHHHHHcCCCcchhHHHHHHhhccc
Confidence            45556666666777899999999999988877                66666666666665    56888888888776


Q ss_pred             hhCCCCcHHHHHHHHHHHH----hcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHH----hcCCHHHHHHHHHHHHHc
Q 036107          205 KDCISLSSQIFDVLIHGWC----KTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYC----REKDFRKVDYTLKEMQEK  276 (441)
Q Consensus       205 ~~~~~~~~~~~~~li~~~~----~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~----~~g~~~~a~~l~~~m~~~  276 (441)
                      .....+.  ....+...+.    ...+.+.|...++.....|..   .....+...+.    .......+...+......
T Consensus        65 ~~~~~~~--a~~~l~~~~~~~~~~~~~~~~a~~~~~~a~~~g~~---~a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~  139 (265)
T d1ouva_          65 CDLNYSN--GCHLLGNLYYSGQGVSQNTNKALQYYSKACDLKYA---EGCASLGGIYHDGKVVTRDFKKAVEYFTKACDL  139 (265)
T ss_dssp             HHTTCHH--HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCH---HHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT
T ss_pred             ccccccc--hhhccccccccccccchhhHHHHHHHhhhhhhhhh---hHHHhhcccccCCCcccchhHHHHHHhhhhhcc
Confidence            4422232  2333333333    246788899988888776532   22222222222    234567777777776664


Q ss_pred             CCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCccchHHHHHHHHHh----cCC
Q 036107          277 GCKPSVITCTIVMHALEK----AKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACV----RSE  348 (441)
Q Consensus       277 g~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~~~li~~~~~----~g~  348 (441)
                         .+...+..|...+..    ..+...+...++...+.|.   ...                ...+-..|..    ..+
T Consensus       140 ---~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~a~~~g~---~~A----------------~~~lg~~y~~g~~~~~d  197 (265)
T d1ouva_         140 ---NDGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLKD---SPG----------------CFNAGNMYHHGEGATKN  197 (265)
T ss_dssp             ---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC---HHH----------------HHHHHHHHHHTCSSCCC
T ss_pred             ---cccchhhhhhhhhccCCCcccccccchhhhhccccccc---ccc----------------ccchhhhcccCcccccc
Confidence               355666666666664    3455666666666666552   222                2222222222    457


Q ss_pred             hhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCChhhHHHHHHHHHHHHHCCC
Q 036107          349 EGNALKLRQKIEEDSCKPDCETHARSLKMCCH----KKRMKDGMLVLNLMREMLSKGI  402 (441)
Q Consensus       349 ~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~----~g~~~~a~~~~~~~~~m~~~~~  402 (441)
                      .++|+..|++-.+.|   +...+..|-..|.+    ..+.++|.+   .+++-...|.
T Consensus       198 ~~~A~~~~~~aa~~g---~~~a~~~LG~~y~~G~g~~~n~~~A~~---~~~kAa~~g~  249 (265)
T d1ouva_         198 FKEALARYSKACELE---NGGGCFNLGAMQYNGEGVTRNEKQAIE---NFKKGCKLGA  249 (265)
T ss_dssp             HHHHHHHHHHHHHTT---CHHHHHHHHHHHHTTSSSSCCSTTHHH---HHHHHHHHTC
T ss_pred             hhhhhhhHhhhhccc---CHHHHHHHHHHHHcCCCCccCHHHHHH---HHHHHHHCcC
Confidence            888888888887776   34444444455543    235666755   5555444453

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=96.64  E-value=0.0017  Score=54.94  Aligned_cols=122  Identities=5%  Similarity=0.035  Sum_probs=83.1

Q ss_pred             HHhcCCHHHHHHHHHHhhhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCH-hhHHHHHHHHHhcCCHHHH
Q 036107          188 LVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDG-VSYTCFIEHYCREKDFRKV  266 (441)
Q Consensus       188 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~-~~~~~li~~~~~~g~~~~a  266 (441)
                      ..+.|++++|++.+++.-+..+-+...+..+...++..|++++|.+.|+...+.  .|+. ..+..+...+...+..+++
T Consensus         6 aL~~G~l~eAl~~l~~al~~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l--~P~~~~~~~~l~~ll~a~~~~~~a   83 (264)
T d1zbpa1           6 ALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKL--FPEYLPGASQLRHLVKAAQARKDF   83 (264)
T ss_dssp             HTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CGGGHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHhccccHHH
Confidence            346799999999999986666788999999999999999999999999999874  4553 3333333333322222222


Q ss_pred             HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 036107          267 DYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSD  311 (441)
Q Consensus       267 ~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~  311 (441)
                      ..-...-...+-+++...+......+.+.|+.++|...+.+..+.
T Consensus        84 ~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~  128 (264)
T d1zbpa1          84 AQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL  128 (264)
T ss_dssp             TTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc
Confidence            111111011122233445555567788899999999999998764

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=96.54  E-value=0.039  Score=42.52  Aligned_cols=92  Identities=14%  Similarity=0.036  Sum_probs=46.5

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHhhh---------------CC-CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC
Q 036107          183 VLMDTLVKRNSVAHAYKVFLKFKD---------------CI-SLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPD  246 (441)
Q Consensus       183 ~li~~~~~~g~~~~a~~~~~~~~~---------------~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~  246 (441)
                      .....+.+.|++++|+..|.+.-.               .. +.....|..+-.+|.+.|++++|+..+++..+.. +.+
T Consensus        32 ~~~~~~~~~~~y~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~-p~~  110 (169)
T d1ihga1          32 NIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEID-PSN  110 (169)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTC
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhChhhHHHHHHHHHHHHhhcccchhhhhhhhhhhhh-hhh
Confidence            344556788999999888866411               00 1122233334444455555555555555554432 123


Q ss_pred             HhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 036107          247 GVSYTCFIEHYCREKDFRKVDYTLKEMQE  275 (441)
Q Consensus       247 ~~~~~~li~~~~~~g~~~~a~~l~~~m~~  275 (441)
                      +..|..+-.++.+.|++++|...|+...+
T Consensus       111 ~~a~~~~g~~~~~l~~~~~A~~~~~~al~  139 (169)
T d1ihga1         111 TKALYRRAQGWQGLKEYDQALADLKKAQE  139 (169)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             hhHHHhHHHHHHHccCHHHHHHHHHHHHH
Confidence            34444555555555555555555555444

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=96.46  E-value=0.045  Score=42.14  Aligned_cols=120  Identities=12%  Similarity=0.109  Sum_probs=81.1

Q ss_pred             HHHHHHHHHcCCChhHHHHHHHHHHHhcCCCccHH--HHHHHHhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCC
Q 036107          133 YNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLA--AMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISL  210 (441)
Q Consensus       133 y~~li~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~--~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~  210 (441)
                      +...-..+.+.|+++.|++.|.+..+..+......  .-...+.......+..+-.++.+.|++++|+..++..-.--+.
T Consensus        30 ~~~~~~~~~~~~~y~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~  109 (169)
T d1ihga1          30 LKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPS  109 (169)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhChhhHHHHHHHHHHHHhhcccchhhhhhhhhhhhhhh
Confidence            44445566778888888888877654210000000  0000001114556777888899999999999999998655567


Q ss_pred             cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC-HhhHHHHH
Q 036107          211 SSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPD-GVSYTCFI  254 (441)
Q Consensus       211 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li  254 (441)
                      +...|..+-.+|.+.|++++|.+.|++..+.  .|+ ...+..+.
T Consensus       110 ~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l--~p~n~~~~~~l~  152 (169)
T d1ihga1         110 NTKALYRRAQGWQGLKEYDQALADLKKAQEI--APEDKAIQAELL  152 (169)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred             hhhHHHhHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHH
Confidence            8888999999999999999999999999874  454 33444433

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=96.44  E-value=0.0087  Score=45.20  Aligned_cols=71  Identities=7%  Similarity=-0.034  Sum_probs=46.3

Q ss_pred             HcCCChhHHHHHHHHHHHhcCCCccHHHHHHHHhhcCHHHHHHHHHHHHhc----------CCHHHHHHHHHHhhhCCCC
Q 036107          141 GKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKR----------NSVAHAYKVFLKFKDCISL  210 (441)
Q Consensus       141 ~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~----------g~~~~a~~~~~~~~~~~~~  210 (441)
                      -+.+.+++|.+.|+...+..|.              +..++..+-.++...          +.+++|+..|++.-+--+.
T Consensus         8 ~r~~~fe~A~~~~e~al~~~P~--------------~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~   73 (145)
T d1zu2a1           8 DRILLFEQIRQDAENTYKSNPL--------------DADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPK   73 (145)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCTT--------------CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred             HHHccHHHHHHHHHHHHhhCCc--------------chHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcch
Confidence            3456789999999999886643              667777777666644          4446666666665433345


Q ss_pred             cHHHHHHHHHHHHhc
Q 036107          211 SSQIFDVLIHGWCKT  225 (441)
Q Consensus       211 ~~~~~~~li~~~~~~  225 (441)
                      +..+|..+-.+|...
T Consensus        74 ~~~a~~~lG~~y~~~   88 (145)
T d1zu2a1          74 KDEAVWCIGNAYTSF   88 (145)
T ss_dssp             CHHHHHHHHHHHHHH
T ss_pred             hhHHHhhHHHHHHHc
Confidence            556666666666544

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=96.31  E-value=0.041  Score=41.74  Aligned_cols=90  Identities=12%  Similarity=0.083  Sum_probs=59.8

Q ss_pred             HHHHhcCCHHHHHHHHHHHhhC--CCCC----------CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHc-----CCCCC-
Q 036107          220 HGWCKTRKSDYAQKAMKEMFQH--GFSP----------DGVSYTCFIEHYCREKDFRKVDYTLKEMQEK-----GCKPS-  281 (441)
Q Consensus       220 ~~~~~~~~~~~a~~~~~~m~~~--g~~p----------~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~-----g~~p~-  281 (441)
                      ..+...|++++|++.|++..+.  .. |          ....|+.+-.+|.+.|++++|...+++..+.     ...++ 
T Consensus        17 ~~~~~~g~y~~Ai~~y~~Al~i~~~~-~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~   95 (156)
T d2hr2a1          17 QRQLVAGEYDEAAANCRRAMEISHTM-PPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDE   95 (156)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHHHHTTS-CTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhChhh-hhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccc
Confidence            3444556777777766666541  11 1          1356777788888888888888887776532     12222 


Q ss_pred             ----HHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 036107          282 ----VITCTIVMHALEKAKQIYEALKVYEKMKS  310 (441)
Q Consensus       282 ----~~~~~~ll~~~~~~~~~~~a~~~~~~m~~  310 (441)
                          ...|+.+-.+|...|++++|...|++..+
T Consensus        96 ~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~  128 (156)
T d2hr2a1          96 GKLWISAVYSRALALDGLGRGAEAMPEFKKVVE  128 (156)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             cchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence                23567778889999999999999988654

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.24  E-value=0.063  Score=49.54  Aligned_cols=117  Identities=8%  Similarity=-0.125  Sum_probs=68.2

Q ss_pred             CcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC-HhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 036107          210 LSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPD-GVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIV  288 (441)
Q Consensus       210 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~l  288 (441)
                      ++...+..+-..+.+.|+.+.|...+.....    ++ ..++..+-..+...|++++|...|++..+... -+...|+.|
T Consensus       118 ~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~----~~~~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P-~~~~~~~~L  192 (497)
T d1ya0a1         118 PCRVKSSQLGIISNKQTHTSAIVKPQSSSCS----YICQHCLVHLGDIARYRNQTSQAESYYRHAAQLVP-SNGQPYNQL  192 (497)
T ss_dssp             -------------------------CCHHHH----HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TBSHHHHHH
T ss_pred             hhHHHHHHhHHHHHhCCCHHHHHHHHHHHhC----CCHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCC-CchHHHHHH
Confidence            4455566677777788888888877666543    22 24667777888888899999999888877532 256788888


Q ss_pred             HHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCc
Q 036107          289 MHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVR  332 (441)
Q Consensus       289 l~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~  332 (441)
                      -..+...|+..+|...|.+..... +|-..++..|...|.+...
T Consensus       193 g~~~~~~~~~~~A~~~y~ral~~~-~~~~~a~~nL~~~~~~~~~  235 (497)
T d1ya0a1         193 AILASSKGDHLTTIFYYCRSIAVK-FPFPAASTNLQKALSKALE  235 (497)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHSSS-BCCHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHcCCHHHHHHHHHHHHhCC-CCCHHHHHHHHHHHHHhhh
Confidence            888888999999998888887765 4566777777777766543

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=96.15  E-value=0.15  Score=39.00  Aligned_cols=81  Identities=10%  Similarity=0.001  Sum_probs=63.1

Q ss_pred             HHHHHHHHHHHcCCChhHHHHHHHHHHHhcCCCccHHHHHHHHhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCC
Q 036107          131 ETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISL  210 (441)
Q Consensus       131 ~~y~~li~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~  210 (441)
                      ..|+.+-.+|.+.|++++|++.+++.....|.              +..+|..+..++...|++++|...|+....-.+.
T Consensus        65 ~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~--------------~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~  130 (168)
T d1kt1a1          65 AAFLNLAMCYLKLREYTKAVECCDKALGLDSA--------------NEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQ  130 (168)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTT
T ss_pred             HHHHhHHHHHHHhhhcccchhhhhhhhhcccc--------------hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence            45777778889999999999999999886533              7788999999999999999999999998654445


Q ss_pred             cHHHHHHHHHHHHhc
Q 036107          211 SSQIFDVLIHGWCKT  225 (441)
Q Consensus       211 ~~~~~~~li~~~~~~  225 (441)
                      +......+-....+.
T Consensus       131 n~~~~~~l~~~~~~~  145 (168)
T d1kt1a1         131 NKAARLQIFMCQKKA  145 (168)
T ss_dssp             CHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHH
Confidence            555555544443333

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=96.03  E-value=0.06  Score=40.77  Aligned_cols=102  Identities=13%  Similarity=0.055  Sum_probs=72.6

Q ss_pred             hhHHHH--HHHHHhcCCHHHHHHHHHHHHHcC-CCC----------CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC---
Q 036107          248 VSYTCF--IEHYCREKDFRKVDYTLKEMQEKG-CKP----------SVITCTIVMHALEKAKQIYEALKVYEKMKSD---  311 (441)
Q Consensus       248 ~~~~~l--i~~~~~~g~~~~a~~l~~~m~~~g-~~p----------~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~---  311 (441)
                      .+|..+  ...+.+.|++++|+..|++..+.. -.|          ....|+.+-.+|.+.|++++|...+++..+.   
T Consensus         8 ~a~~~l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~   87 (156)
T d2hr2a1           8 GAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNR   87 (156)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccc
Confidence            456655  445667899999999999987531 111          2467889999999999999999999887642   


Q ss_pred             --CCCCCHHHHHHHHHHHHhcCccchHHHHHHHHHhcCChhHHHHHHHHHH
Q 036107          312 --DCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIE  360 (441)
Q Consensus       312 --g~~~~~~~~~~li~~~~~~g~~~~~~~li~~~~~~g~~~~a~~~~~~m~  360 (441)
                        ...++...  ...         ..|+.+-.+|...|++++|+..|++..
T Consensus        88 ~~~~~~~~~~--~~~---------~a~~~~g~~~~~lg~~eeA~~~~~~Al  127 (156)
T d2hr2a1          88 RGELNQDEGK--LWI---------SAVYSRALALDGLGRGAEAMPEFKKVV  127 (156)
T ss_dssp             HCCTTSTHHH--HHH---------HHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             cccccccccc--hhH---------HHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence              22222211  111         126677788999999999999998865

>d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Hypothetical protein ST1625
family: Hypothetical protein ST1625
domain: Hypothetical protein ST1625
species: Archaeon Sulfolobus tokodaii [TaxId: 111955]

Probab=95.77  E-value=0.19  Score=35.73  Aligned_cols=137  Identities=10%  Similarity=0.009  Sum_probs=84.3

Q ss_pred             hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhh-CCCCCCHHHHHHHHHHHHhcCcc-chH
Q 036107          259 REKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKS-DDCLTDTSFYSSLIFILSKAVRF-LIY  336 (441)
Q Consensus       259 ~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~-~g~~~~~~~~~~li~~~~~~g~~-~~~  336 (441)
                      -.|..++..+++.+....   .+..-||.+|--....-+-+...++++..-+ .++.|- .-...++..+.+.+.. ..+
T Consensus        14 ldG~ve~Gveii~k~~~s---s~~~E~NW~ICNiidt~dC~~v~~~Ld~IG~~FDls~C-~Nlk~vv~C~~~~n~~se~v   89 (161)
T d1wy6a1          14 LDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLDKC-QNLKSVVECGVINNTLNEHV   89 (161)
T ss_dssp             HTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGGGC-SCTHHHHHHHHHTTCCCHHH
T ss_pred             HhhhHHhHHHHHHHHccc---CCccccceeeeecccccchHHHHHHHHHHhhhcCchhh-hcHHHHHHHHHHhcchHHHH
Confidence            345566666666665443   2344455555444444444444444444432 112111 1123344555555544 335


Q ss_pred             HHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCC
Q 036107          337 NTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIV  403 (441)
Q Consensus       337 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~~~~m~~~~~~  403 (441)
                      +..++...+.|+-+.-.++++.+.+. -+|++...-.+-.+|.+.|...++.+   ++.+..++|++
T Consensus        90 dlALd~lv~~~kkd~Ld~i~~~l~kn-~~i~~~~llkia~A~kkig~~re~ne---ll~~ACe~G~K  152 (161)
T d1wy6a1          90 NKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATT---LLIEACKKGEK  152 (161)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHH---HHHHHHHTTCH
T ss_pred             HHHHHHHHHhccHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHhcchhhHHH---HHHHHHHHhHH
Confidence            66778888888889999998887663 47888888889999999999998866   77887778775

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=95.72  E-value=0.025  Score=42.48  Aligned_cols=115  Identities=8%  Similarity=-0.017  Sum_probs=74.1

Q ss_pred             HHhcCCHHHHHHHHHHhhhCCCCcHHHHHHHHHHHHhc----------CCHHHHHHHHHHHhhCCCCC-CHhhHHHHHHH
Q 036107          188 LVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKT----------RKSDYAQKAMKEMFQHGFSP-DGVSYTCFIEH  256 (441)
Q Consensus       188 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~----------~~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~  256 (441)
                      |-+.+.+++|...|+..-...+.+...+..+-.++...          +.+++|...|++..+.  .| +..+|..+-.+
T Consensus         7 ~~r~~~fe~A~~~~e~al~~~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l--~P~~~~a~~~lG~~   84 (145)
T d1zu2a1           7 FDRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLI--DPKKDEAVWCIGNA   84 (145)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHH
T ss_pred             HHHHccHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHh--cchhhHHHhhHHHH
Confidence            34567789999999888555566777777777776643          4457788888888763  34 45677777777


Q ss_pred             HHhcCC-----------HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCC
Q 036107          257 YCREKD-----------FRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDD  312 (441)
Q Consensus       257 ~~~~g~-----------~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g  312 (441)
                      |...|+           +++|.+.|+...+.  .|+..+|..-+..+      .++.+++.+..+.|
T Consensus        85 y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l--~P~~~~~~~~L~~~------~ka~~~~~e~~k~~  143 (145)
T d1zu2a1          85 YTSFAFLTPDETEAKHNFDLATQFFQQAVDE--QPDNTHYLKSLEMT------AKAPQLHAEAYKQG  143 (145)
T ss_dssp             HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHH------HTHHHHHHHHHHSS
T ss_pred             HHHcccchhhHHHHHHhHHHhhhhhhccccc--CCCHHHHHHHHHHH------HHHHHHHHHHHHHh
Confidence            765442           56677777766653  45555555444433      45566666665554

>d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Hypothetical protein ST1625
family: Hypothetical protein ST1625
domain: Hypothetical protein ST1625
species: Archaeon Sulfolobus tokodaii [TaxId: 111955]

Probab=94.98  E-value=0.38  Score=34.23  Aligned_cols=139  Identities=11%  Similarity=0.013  Sum_probs=84.3

Q ss_pred             cCCChhHHHHHHHHHHHhcCCCccHHHHHHHHhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcHHHHHHHHHH
Q 036107          142 KSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHG  221 (441)
Q Consensus       142 ~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~  221 (441)
                      -.|..++-.+++.+.....                +..-||-+|--....-+-+-..++++.+.+.+..+          
T Consensus        14 ldG~ve~Gveii~k~~~ss----------------~~~E~NW~ICNiidt~dC~~v~~~Ld~IG~~FDls----------   67 (161)
T d1wy6a1          14 LDGYIDEGVKIVLEITKSS----------------TKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLD----------   67 (161)
T ss_dssp             HTTCHHHHHHHHHHHHHHS----------------CHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGG----------
T ss_pred             HhhhHHhHHHHHHHHcccC----------------CccccceeeeecccccchHHHHHHHHHHhhhcCch----------
Confidence            3566677777777766654                44555555555555555555555555554322222          


Q ss_pred             HHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 036107          222 WCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEA  301 (441)
Q Consensus       222 ~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a  301 (441)
                        +++++.....-+-.+-     .+..-++..++...++|+-++-.++++++.+. -+|++...-.+-.||.+.|...++
T Consensus        68 --~C~Nlk~vv~C~~~~n-----~~se~vdlALd~lv~~~kkd~Ld~i~~~l~kn-~~i~~~~llkia~A~kkig~~re~  139 (161)
T d1wy6a1          68 --KCQNLKSVVECGVINN-----TLNEHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDA  139 (161)
T ss_dssp             --GCSCTHHHHHHHHHTT-----CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHH
T ss_pred             --hhhcHHHHHHHHHHhc-----chHHHHHHHHHHHHHhccHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHhcchhhH
Confidence              2333444333333332     23445566677777788888888888876663 345677777777888888888888


Q ss_pred             HHHHHHHhhCCCC
Q 036107          302 LKVYEKMKSDDCL  314 (441)
Q Consensus       302 ~~~~~~m~~~g~~  314 (441)
                      -+++.+.-+.|++
T Consensus       140 nell~~ACe~G~K  152 (161)
T d1wy6a1         140 TTLLIEACKKGEK  152 (161)
T ss_dssp             HHHHHHHHHTTCH
T ss_pred             HHHHHHHHHHhHH
Confidence            8888877777764

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.68  E-value=0.051  Score=50.19  Aligned_cols=116  Identities=9%  Similarity=-0.081  Sum_probs=71.9

Q ss_pred             CHHHHHHHHHHHHcCCChhHHHHHHHHHHHhcCCCccHHHHHHHHhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCC
Q 036107          129 TPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCI  208 (441)
Q Consensus       129 ~~~~y~~li~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~  208 (441)
                      +...|..+-..+.+.|+.+.|...+.......                ...++..+-..+...|++++|...|.+.-.-.
T Consensus       119 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~----------------~~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~  182 (497)
T d1ya0a1         119 CRVKSSQLGIISNKQTHTSAIVKPQSSSCSYI----------------CQHCLVHLGDIARYRNQTSQAESYYRHAAQLV  182 (497)
T ss_dssp             ------------------------CCHHHHHH----------------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             hHHHHHHhHHHHHhCCCHHHHHHHHHHHhCCC----------------HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC
Confidence            34567777777778888888887776654432                23567778888899999999999999886655


Q ss_pred             CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcC
Q 036107          209 SLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREK  261 (441)
Q Consensus       209 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g  261 (441)
                      +-+...|+.|-..+...|+..+|...|.+-.... +|-..++..|...+.+..
T Consensus       183 P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~-~~~~~a~~nL~~~~~~~~  234 (497)
T d1ya0a1         183 PSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVK-FPFPAASTNLQKALSKAL  234 (497)
T ss_dssp             TTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSS-BCCHHHHHHHHHHHHHHT
T ss_pred             CCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC-CCCHHHHHHHHHHHHHhh
Confidence            6777889999999999999999999999888753 466778888887776543

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=94.65  E-value=0.9  Score=37.03  Aligned_cols=216  Identities=9%  Similarity=0.006  Sum_probs=118.9

Q ss_pred             HhhhhchhhHHHHHhhhcCchhhHHHHHHHHHhcCCChHHHHHHHhhhhhHhhhhcCCCCCCHHHHHHHHHHHHc----C
Q 036107           68 ESLKLNEQSRISSHALSEDHETDVDKVSEILRKRYPSPDKVVEALKCFCFTWAKTQTGYMHTPETYNAMVEALGK----S  143 (441)
Q Consensus        68 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~g~~p~~~~y~~li~~~~~----~  143 (441)
                      +.++.++|...+....+.|.....-.+..+.........+...|...+....   ..+   +......+...+..    .
T Consensus        14 ~~~d~~~A~~~~~kAa~~g~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~---~~~---~~~a~~~l~~~~~~~~~~~   87 (265)
T d1ouva_          14 KEKDFTQAKKYFEKACDLKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKAC---DLN---YSNGCHLLGNLYYSGQGVS   87 (265)
T ss_dssp             HTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHH---HTT---CHHHHHHHHHHHHHTSSSC
T ss_pred             HCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcchhHHHHHHhhcccc---ccc---ccchhhccccccccccccc
Confidence            3456777777777776666433322233333333333456666666653221   222   33444444333332    3


Q ss_pred             CChhHHHHHHHHHHHhcCCCccHHHHHHHHhhcCHHHHHHHHHHHHh----cCCHHHHHHHHHHhhhCCCCcHHHHHHHH
Q 036107          144 KKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVK----RNSVAHAYKVFLKFKDCISLSSQIFDVLI  219 (441)
Q Consensus       144 ~~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~li  219 (441)
                      .+.+.|...++.....+                .......+...+..    ......+...+.....  ..+...+..|.
T Consensus        88 ~~~~~a~~~~~~a~~~g----------------~~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~L~  149 (265)
T d1ouva_          88 QNTNKALQYYSKACDLK----------------YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACD--LNDGDGCTILG  149 (265)
T ss_dssp             CCHHHHHHHHHHHHHTT----------------CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHH--TTCHHHHHHHH
T ss_pred             hhhHHHHHHHhhhhhhh----------------hhhHHHhhcccccCCCcccchhHHHHHHhhhhhc--ccccchhhhhh
Confidence            46667777777766655                33343334333332    3455566666655432  23445566666


Q ss_pred             HHHHh----cCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 036107          220 HGWCK----TRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCR----EKDFRKVDYTLKEMQEKGCKPSVITCTIVMHA  291 (441)
Q Consensus       220 ~~~~~----~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~  291 (441)
                      ..|..    ..+...+..+++...+.|   +......+-..|..    ..++++|...|+...+.|   +...+..|-..
T Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~a~~~g---~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~g---~~~a~~~LG~~  223 (265)
T d1ouva_         150 SLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLGAM  223 (265)
T ss_dssp             HHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHH
T ss_pred             hhhccCCCcccccccchhhhhcccccc---ccccccchhhhcccCcccccchhhhhhhHhhhhccc---CHHHHHHHHHH
Confidence            66654    456677777777776654   44444444444443    457888888888877766   34455555555


Q ss_pred             HHh----cCCHHHHHHHHHHHhhCCC
Q 036107          292 LEK----AKQIYEALKVYEKMKSDDC  313 (441)
Q Consensus       292 ~~~----~~~~~~a~~~~~~m~~~g~  313 (441)
                      |.+    ..+.++|.+.|+...+.|.
T Consensus       224 y~~G~g~~~n~~~A~~~~~kAa~~g~  249 (265)
T d1ouva_         224 QYNGEGVTRNEKQAIENFKKGCKLGA  249 (265)
T ss_dssp             HHTTSSSSCCSTTHHHHHHHHHHHTC
T ss_pred             HHcCCCCccCHHHHHHHHHHHHHCcC
Confidence            554    3367778888887777663

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.09  E-value=0.38  Score=32.48  Aligned_cols=27  Identities=15%  Similarity=0.101  Sum_probs=12.7

Q ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 036107          249 SYTCFIEHYCREKDFRKVDYTLKEMQE  275 (441)
Q Consensus       249 ~~~~li~~~~~~g~~~~a~~l~~~m~~  275 (441)
                      +++.+-.++.+.|++++|...+++..+
T Consensus        48 ~l~~Lg~~~~~~g~~~~A~~~y~~aL~   74 (95)
T d1tjca_          48 VLDYLSYAVYQQGDLDKALLLTKKLLE   74 (95)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHhhHHHhcCChHHHHHHHHHHHH
Confidence            344444444444444444444444444

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.88  E-value=0.12  Score=35.26  Aligned_cols=73  Identities=11%  Similarity=0.001  Sum_probs=54.1

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHhh----hC--CC-CcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC-Hhh
Q 036107          178 TRAMSVLMDTLVKRNSVAHAYKVFLKFK----DC--IS-LSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPD-GVS  249 (441)
Q Consensus       178 ~~~~~~li~~~~~~g~~~~a~~~~~~~~----~~--~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~  249 (441)
                      ...+--+-..+.+.|++++|...|++.-    ..  .. ....+++.|-.+|.+.|++++|...+++..+.  .|+ ..+
T Consensus         5 addc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l--~P~~~~a   82 (95)
T d1tjca_           5 AEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL--DPEHQRA   82 (95)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHh--CcCCHHH
Confidence            3444466778889999999999998752    11  12 23567899999999999999999999999874  455 334


Q ss_pred             HHH
Q 036107          250 YTC  252 (441)
Q Consensus       250 ~~~  252 (441)
                      ++.
T Consensus        83 ~~N   85 (95)
T d1tjca_          83 NGN   85 (95)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            433

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=87.37  E-value=3.6  Score=29.18  Aligned_cols=48  Identities=21%  Similarity=0.104  Sum_probs=23.6

Q ss_pred             CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHhhCC
Q 036107          262 DFRKVDYTLKEMQEKGCKPSVITCTIVMHALEK----AKQIYEALKVYEKMKSDD  312 (441)
Q Consensus       262 ~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~m~~~g  312 (441)
                      +.++|.++|++..+.|.   ......|-..|..    ..+.++|.+.|+...+.|
T Consensus        74 d~~~A~~~~~~aa~~g~---~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G  125 (133)
T d1klxa_          74 DLRKAAQYYSKACGLND---QDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG  125 (133)
T ss_dssp             CHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred             hhHHHHHHHhhhhccCc---chHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCC
Confidence            45555555555555442   2223333333333    245566666666655555

>d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Cytochrome c oxidase subunit E
family: Cytochrome c oxidase subunit E
domain: Cytochrome c oxidase subunit E
species: Cow (Bos taurus) [TaxId: 9913]

Probab=86.39  E-value=3.3  Score=27.68  Aligned_cols=62  Identities=16%  Similarity=0.177  Sum_probs=41.8

Q ss_pred             CHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 036107          227 KSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVM  289 (441)
Q Consensus       227 ~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll  289 (441)
                      +.-++.+-++.+....+.|++....+.+.+|.+.+++.-|.++|+-.+...- ++...|..++
T Consensus        21 D~we~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~K~~-~~k~~y~yil   82 (105)
T d1v54e_          21 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAG-PHKEIYPYVI   82 (105)
T ss_dssp             CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT-TCTTHHHHHH
T ss_pred             cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc-CcHHHHHHHH
Confidence            4456667777777777778888888888888888888888887777765421 2233555544

>d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Cytochrome c oxidase subunit E
family: Cytochrome c oxidase subunit E
domain: Cytochrome c oxidase subunit E
species: Cow (Bos taurus) [TaxId: 9913]

Probab=82.94  E-value=4.9  Score=26.82  Aligned_cols=50  Identities=12%  Similarity=0.170  Sum_probs=45.0

Q ss_pred             CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 036107          262 DFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSD  311 (441)
Q Consensus       262 ~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~  311 (441)
                      |.-++.+-++.+....+.|+.....+.++||-+.+++..|.++|+..+.+
T Consensus        21 D~we~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~K   70 (105)
T d1v54e_          21 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK   70 (105)
T ss_dssp             CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence            56677788888888899999999999999999999999999999998864

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=81.48  E-value=6.9  Score=27.55  Aligned_cols=110  Identities=13%  Similarity=0.002  Sum_probs=67.3

Q ss_pred             CHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCCHHHHH
Q 036107          227 KSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEK----AKQIYEAL  302 (441)
Q Consensus       227 ~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~----~~~~~~a~  302 (441)
                      ++++|.++|++..+.|   +...+..|.  .....+.++|.+.+++..+.|.   ...+..|-..|..    ..+.++|.
T Consensus         8 d~~~A~~~~~kaa~~g---~~~a~~~l~--~~~~~~~~~a~~~~~~aa~~g~---~~a~~~Lg~~y~~g~~~~~d~~~A~   79 (133)
T d1klxa_           8 DLKKAIQYYVKACELN---EMFGCLSLV--SNSQINKQKLFQYLSKACELNS---GNGCRFLGDFYENGKYVKKDLRKAA   79 (133)
T ss_dssp             HHHHHHHHHHHHHHTT---CTTHHHHHH--TCTTSCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred             CHHHHHHHHHHHHHCC---Chhhhhhhc--cccccCHHHHHHHHhhhhcccc---hhhhhhHHHhhhhccccchhhHHHH
Confidence            5677788887777665   222233332  2334578888888888877763   3444444444443    45688999


Q ss_pred             HHHHHHhhCCCCCCHHHHHHHHHHHHhcCccchHHHHHHHHHh----cCChhHHHHHHHHHHHcC
Q 036107          303 KVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACV----RSEEGNALKLRQKIEEDS  363 (441)
Q Consensus       303 ~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~g  363 (441)
                      +.|+...+.|..   ..                ...|-..|..    ..+.++|.++|++-.+.|
T Consensus        80 ~~~~~aa~~g~~---~a----------------~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G  125 (133)
T d1klxa_          80 QYYSKACGLNDQ---DG----------------CLILGYKQYAGKGVVKNEKQAVKTFEKACRLG  125 (133)
T ss_dssp             HHHHHHHHTTCH---HH----------------HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred             HHHhhhhccCcc---hH----------------HHHHHHHHHcCCccCCCHHHHHHHHHHHHHCC
Confidence            999998887732   22                2222222222    456778888888776665