Citrus Sinensis ID: 036173

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300----
Protein Sequence
MRGVRKQGNYTNPCLTMHQPWASLLVYGIKRVEGRSWPAPLRGRLWIHAASKIPEEATIKAMEEFYREIYAVNGITDLQFPQHYPVSRLLGCVEVVGCVRCEELASWEVVPEGVRLEAQTDFCWLCENPQKLLVPFEMRGYQGVYNLEKKVYEAAVRGLTPVKGPLPVKFPLPDAQDPFSLKPGSMSTNFPENKSTAVEKSSTLNAAIAGARAAATQFNKKNQDLLTNVMQDEKPYALRSGSKKKSSDGDAFNQGTSALAENGERNLIEHEESSSHDQPRGQLKQDPGAPSRIFAAAVKGLKPS
Secondary Structure (PSIPRED)
cccccccccccccEEEEEcHHHHHHHHcccccccccccccccccEEEEEccccccHHHHHHHHHHHHHHHHHccccccccccccccEEEEEEEEEEcEEEcccccccccccccccccccccEEEEcccccccccccccccccccccccHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHcccccccccccccccccHHHHHHccccccccccccccccccccccccccccHHHHHHHHHHcccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccEEcccHHHHHHHHccHHcccccccccccccEEEEcccccccHHHHHHHHHHHHHHHHccccccccccccccccEEEEEEEEEccccHHHcccHHHcccccEccccccEEEEEccccccccccccccccccccccHHHHHHHHHccccccccccccccccccccccccccccEEcccccccccHccccHHHHHHHHHHHHHHHHHccccccccccccccccccHccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHccccc
Coil and Loop (DISEMBL)
mrgvrkqgnytnpcltmhqpWASLLVYGIKrvegrswpaplrgrlwihaaskipeEATIKAMEEFYREIYAVngitdlqfpqhypvsrllgcvevvgcvrceelaswevvpegvrleAQTDfcwlcenpqkllvpfemrgyqgvYNLEKKVYEAAVRgltpvkgplpvkfplpdaqdpfslkpgsmstnfpenkstavEKSSTLNAAIAGARAAATQFNKKNQDLLTNVMqdekpyalrsgskkkssdgdafnqGTSALAENgernlieheessshdqprgqlkqdpgapsRIFAAAVKGLKPS
Flexible Loop (DISEMBL)
mrgvrkqgnytnpcltmhqPWASLLVYGIKRVEGRSWPAPLRGRLWIHAASKIPEEATIKAMEEFYREIYAVNGITDLQFPQHYPVSRLLGCVEVVGCVRCEELASWEVVPEGVRLEAQTDFCWLCENPQKLLVPFEMRGYQGVYNLEKKVYEAAVRGLTPVKGPLPVKFPLPDAQDPFSLKPGSMSTNFPENKSTAVEKSSTLNAAIAGARAAATQFNKKNQDLLTNVMQDEKPYALrsgskkkssdgdAFNQGTSALAENGERNLIEHeessshdqprgqlkqdpgapSRIFAAAVKGLKPS
Low Complexity Region (SEG)
MRGVRKQGNYTNPCLTMHQPWASLLVYGIKRVEGRSWPAPLRGRLWIHAASKIPEEATIKAMEEFYREIYAVNGITDLQFPQHYPVSrllgcvevvgcvrceelASWEVVPEGVRLEAQTDFCWLCENPQKLLVPFEMRGYQGVYNLEKKVYEAAVRGLTPVKGPLPVKFPLPDAQDPFSLKPGSMSTNFPENKSTAVEKSSTLNaaiagaraaaTQFNKKNQDLLTNVMQDEKPYALRsgskkkssdgdAFNQGTSALAENGERNLIEHEESSSHDQPRGQLKQDPGAPSRIFAAAVKGLKPS
Disordered region (IsUnstruct)
*********YTNPCLTMHQPWASLLVYGIKRVEGRSWPAPLRGRLWIHAASKIPEEATIKAMEEFYREIYAVNGITDLQFPQHYPVSRLLGCVEVVGCVRCEELASWEVVPEGVRLEAQTDFCWLCENPQKLLVPFEMRGYQGVYNLEKKVYEAAVRGLTPVKGPLPVK***************************************************************************************************************************************
Disordered Region (DISOPRED)
************PCLTMHQPWASLLVYGIKRVEGRSWPAPLRGRLWIHAASKIPEEATIKAMEEFYREIYAVNGITDLQFPQHYPVSRLLGCVEVVGCVRCEELASWEVVPEGVRLEAQTDFCWLCENPQKLLVPFEMRGYQGVYNLEKKVYEAAVRGLTPVKGPLPVKFPLPDAQDPFSLKPGS************************G***********************************************************************************FAAAVKGL***
Disordered Region (DISEMBL)
********NYTNPCLTMHQPWASLLVYGIKRVEGRSWPAPLRGRLWIHAASKIPEEATIKAMEEFYREIYAVNGITDLQFPQHYPVSRLLGCVEVVGCVRCEELASWEVVPEGVRLEAQTDFCWLCENPQKLLVPFEMRGYQGVYNLEKKVYEAAVRGLTPVKGPLPVKFPLPDAQDPFSLKPGSMSTNFPENKSTAVEKSSTLNAAIAGARAAATQFNKKNQDLLTNVMQDEKPY***************FNQGTSALAENGERNLIE******************GAPSRIFAA********
Disordered Region (DISPRO)
********NYTNPCLTMHQPWASLLVYGIKRVEGRSWPAPLRGRLWIHAASKIPEEATIKAMEEFYREIYAVNGITDLQFPQHYPVSRLLGCVEVVGCVRCEELASWEVVPEGVRLEAQTDFCWLCENPQKLLVPFEMRGYQGVYNLEKKVYEAAVRGLTPVKGPLPVKFPLPDAQDPFSLKPGSMSTNFPENKS*************************************************************************************************************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MRGVRKQGNYTNPCLTMHQPWASLLVYGIKRVEGRSWPAPLRGRLWIHAASKIPEEATIKAMEEFYREIYAVNGITDLQFPQHYPVSRLLGCVEVVGCVRCEELASWEVVPEGVRLEAQTDFCWLCENPQKLLVPFEMRGYQGVYNLEKKVYEAAVRGLTPVKGPLPVKFPLPDAQDPFSLKPGSMSTNFPENKSTAVEKSSTLNAAIAGARAAATQFNKKNQDLLTNVMQDEKPYALRSGSKKKSSDGDAFNQGTSALAENGERNLIEHEESSSHDQPRGQLKQDPGAPSRIFAAAVKGLKPS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	304	2.2.26 [Sep-21-2011]
Q9QXN3	581	Activating signal cointeg	yes	no	0.457	0.239	0.417	3e-29
Q15650	581	Activating signal cointeg	yes	no	0.457	0.239	0.410	1e-28

>sp|Q9QXN3|TRIP4_MOUSE Activating signal cointegrator 1 OS=Mus musculus GN=Trip4 PE=1 SV=2

 Score =  129 bits (324), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 61/146 (41%), Positives = 93/146 (63%), Gaps = 7/146 (4%)

Query: 14  CLTMHQPWASLLVYGIKRVEGRSWPAPLRGRLWIHAASKIPEEATIKAMEEFYREIYAVN 73
           CL+MHQPWASLLV GIKRVEGRSW  P RGRLWI A  K P    +  ++  YR +    
Sbjct: 436 CLSMHQPWASLLVRGIKRVEGRSWYTPHRGRLWIAATGKRPSPQEVSELQATYRLLRG-- 493

Query: 74  GITDLQFPQHYPVSRLLGCVEVVGCVRCEELASWEVVPEGVRLEAQTDFCWLCENPQKLL 133
              D++FP  YP   LLGCV+++ C+  ++    E  P+ +  E+ + F ++C+NPQ+++
Sbjct: 494 --KDVEFPNDYPSGCLLGCVDLIDCLSQKQFQ--EQFPD-ISQESDSSFVFICKNPQEMV 548

Query: 134 VPFEMRGYQGVYNLEKKVYEAAVRGL 159
           V F ++G   ++ L+ K+++ A +GL
Sbjct: 549 VKFPIKGNPKIWKLDSKIHQGAKKGL 574

Transcription coactivator of nuclear receptors which functions in conjunction with CBP-p300 and SRC-1 and may play an important role in establishing distinct coactivator complexes under different cellular conditions. Plays a pivotal role in the transactivation of NF-kappa-B, SRF and AP1. Acts as a mediator of transrepression between nuclear receptor and either AP1 or NF-kappa-B (By similarity). Plays a role in androgen receptor transactivation and testicular function.
Mus musculus (taxid: 10090)

>sp|Q15650|TRIP4_HUMAN Activating signal cointegrator 1 OS=Homo sapiens GN=TRIP4 PE=1 SV=4

 Score =  127 bits (319), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 60/146 (41%), Positives = 94/146 (64%), Gaps = 7/146 (4%)

Query: 14  CLTMHQPWASLLVYGIKRVEGRSWPAPLRGRLWIHAASKIPEEATIKAMEEFYREIYAVN 73
           CL++HQPWASLLV GIKRVEGRSW  P RGRLWI A +K P    +  ++  YR +    
Sbjct: 436 CLSVHQPWASLLVRGIKRVEGRSWYTPHRGRLWIAATAKKPSPQEVSELQATYRLLRG-- 493

Query: 74  GITDLQFPQHYPVSRLLGCVEVVGCVRCEELASWEVVPEGVRLEAQTDFCWLCENPQKLL 133
              D++FP  YP   LLGCV+++ C+  ++    E  P+ +  E+ + F ++C+NPQ+++
Sbjct: 494 --KDVEFPNDYPSGCLLGCVDLIDCLSQKQFK--EQFPD-ISQESDSPFVFICKNPQEMV 548

Query: 134 VPFEMRGYQGVYNLEKKVYEAAVRGL 159
           V F ++G   ++ L+ K+++ A +GL
Sbjct: 549 VKFPIKGNPKIWKLDSKIHQGAKKGL 574

Transcription coactivator of nuclear receptors which functions in conjunction with CBP-p300 and SRC-1 and may play an important role in establishing distinct coactivator complexes under different cellular conditions. Plays a pivotal role in the transactivation of NF-kappa-B, SRF and AP1. Acts as a mediator of transrepression between nuclear receptor and either AP1 or NF-kappa-B. Plays a role in androgen receptor transactivation and in testicular function.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	304
255561917	328	conserved hypothetical protein [Ricinus	0.983	0.911	0.684	1e-111
224145801	221	predicted protein [Populus trichocarpa]	0.726	1.0	0.841	1e-105
356535216	328	PREDICTED: uncharacterized protein LOC10	0.986	0.914	0.622	1e-105
449443251	336	PREDICTED: uncharacterized protein LOC10	0.993	0.898	0.614	1e-103
356576668	283	PREDICTED: activating signal cointegrato	0.733	0.787	0.762	1e-101
225463984	316	PREDICTED: uncharacterized protein LOC10	0.986	0.949	0.619	1e-101
224125692	236	predicted protein [Populus trichocarpa]	0.703	0.906	0.790	7e-97
225433114	266	PREDICTED: activating signal cointegrato	0.756	0.864	0.753	3e-94
357441335	551	Activating signal cointegrator [Medicago	0.898	0.495	0.6	5e-94
297832636	327	hypothetical protein ARALYDRAFT_900393 [	0.957	0.889	0.559	1e-93

>gi|255561917|ref|XP_002521967.1| conserved hypothetical protein [Ricinus communis] gi|223538771|gb|EEF40371.1| conserved hypothetical protein [Ricinus communis]

 Score =  407 bits (1047), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 213/311 (68%), Positives = 244/311 (78%), Gaps = 12/311 (3%)

Query: 1   MRGVRKQGNYTNPCLTMHQPWASLLVYGIKRVEGRSWPAPLRGRLWIHAASKIPEEATIK 60
           MRG R  GNYTNPCLTMHQPWASLLVYGIKR+EGRSWP+P+RGRLWIHAASK+PEEATIK
Sbjct: 1   MRG-RSHGNYTNPCLTMHQPWASLLVYGIKRIEGRSWPSPVRGRLWIHAASKVPEEATIK 59

Query: 61  AMEEFYREIYAVNGITDLQFPQHYPVSRLLGCVEVVGCVRCEELASWEVVPEGVRLEAQT 120
           AME+FYREIYAVNGITD++FP+HYPVSRLLGCVEVVGCVRCEELASWE  PEG RLE QT
Sbjct: 60  AMEDFYREIYAVNGITDIKFPEHYPVSRLLGCVEVVGCVRCEELASWEATPEGARLEGQT 119

Query: 121 DFCWLCENPQKLLVPFEMRGYQGVYNLEKKVYEAAVRGLTPVKGPLPVKFPLPDAQDPFS 180
           DFCWLCE PQKLLVPFEMRGYQGVYNLEKK++EAAVRGLTPVKGP+PV FPLP+  DPFS
Sbjct: 120 DFCWLCEQPQKLLVPFEMRGYQGVYNLEKKIFEAAVRGLTPVKGPMPVTFPLPNPCDPFS 179

Query: 181 LKPGSMSTNFPENKSTAVEKSSTLNAAIAGARAAATQFNKKNQDLLTNVMQDEKPYALRS 240
           LKPGS+S     +K++ VEKS++L  AIAGARAAATQFNKK Q+L TN  Q+    A RS
Sbjct: 180 LKPGSISMQL-LDKASQVEKSASLTTAIAGARAAATQFNKKGQNLPTNNAQNSNSNAARS 238

Query: 241 G----------SKKKSSDGDAFNQGTSALAENGERNLIEHEESSSHDQPRGQLKQDPGAP 290
                        ++    + FN  +S   E  + N I++EESSSH + R  +KQ PGAP
Sbjct: 239 DPVETKPLEEHKLQQDKSYEDFNDESSVPKETEQTNCIKYEESSSHSRTRLDMKQFPGAP 298

Query: 291 SRIFAAAVKGL 301
           ++  A     L
Sbjct: 299 AKFCATLSVAL 309

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224145801|ref|XP_002325770.1| predicted protein [Populus trichocarpa] gi|222862645|gb|EEF00152.1| predicted protein [Populus trichocarpa]

 Score =  387 bits (994), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 186/221 (84%), Positives = 205/221 (92%)

Query: 8   GNYTNPCLTMHQPWASLLVYGIKRVEGRSWPAPLRGRLWIHAASKIPEEATIKAMEEFYR 67
           GNYTNPCLTMHQPWASLLVYGIKR+EGRSW  P+RGRLWIHAASK+PEE TIK ME+FYR
Sbjct: 1   GNYTNPCLTMHQPWASLLVYGIKRIEGRSWTTPIRGRLWIHAASKVPEEDTIKTMEDFYR 60

Query: 68  EIYAVNGITDLQFPQHYPVSRLLGCVEVVGCVRCEELASWEVVPEGVRLEAQTDFCWLCE 127
           EIYAVNGITDL+FP+HYPVSRLLGCVEVVGCV+CEELASWE VPEGVRLE QTDFCWLCE
Sbjct: 61  EIYAVNGITDLKFPEHYPVSRLLGCVEVVGCVKCEELASWEAVPEGVRLEGQTDFCWLCE 120

Query: 128 NPQKLLVPFEMRGYQGVYNLEKKVYEAAVRGLTPVKGPLPVKFPLPDAQDPFSLKPGSMS 187
            PQKLLVPFEMRGYQGVYNLE+KVY AA+RGL PVKGP+PVKFPLP+ QDPFSLKPGS+S
Sbjct: 121 QPQKLLVPFEMRGYQGVYNLERKVYAAAIRGLVPVKGPMPVKFPLPNPQDPFSLKPGSIS 180

Query: 188 TNFPENKSTAVEKSSTLNAAIAGARAAATQFNKKNQDLLTN 228
             F +NK++ VEKS  L+AAIAGARAAATQFNKK+Q+LL+N
Sbjct: 181 VGFSDNKASVVEKSEGLSAAIAGARAAATQFNKKDQNLLSN 221

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356535216|ref|XP_003536144.1| PREDICTED: uncharacterized protein LOC100794041 [Glycine max]

 Score =  387 bits (994), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 203/326 (62%), Positives = 248/326 (76%), Gaps = 26/326 (7%)

Query: 2   RGVRKQGNYTNPCLTMHQPWASLLVYGIKRVEGRSWPAPLRGRLWIHAASKIPEEATIKA 61
           R     GNY NPCLTMHQPWASLLVYGIKRVEGRSWPAP+ GRLWIHAASK+PEE+TIKA
Sbjct: 3   RNHSNSGNYRNPCLTMHQPWASLLVYGIKRVEGRSWPAPITGRLWIHAASKVPEESTIKA 62

Query: 62  MEEFYREIYAVNGITDLQFPQHYPVSRLLGCVEVVGCVRCEELASWEVVPEGVRLEAQTD 121
           ME FY+EIYA+NGITD+QFPQHYPVSRLLGCVEVVGC+  +ELA WE+VPEGVR+EAQTD
Sbjct: 63  MEYFYKEIYALNGITDIQFPQHYPVSRLLGCVEVVGCLTRDELACWEMVPEGVRVEAQTD 122

Query: 122 FCWLCENPQKLLVPFEMRGYQGVYNLEKKVYEAAVRGLTPVKGPLPVKFPLPDAQDPFSL 181
           +CWLCE PQKLL+PFEMRGYQGVYNLEKK+YEAAVRGL+PV  PLPVKFPLPD Q+PFSL
Sbjct: 123 YCWLCERPQKLLIPFEMRGYQGVYNLEKKIYEAAVRGLSPVNSPLPVKFPLPDPQNPFSL 182

Query: 182 KPGSMSTNFPENKSTAVEKSSTLNAAIAGARAAATQFNKKNQDLLTNVMQDEKPYALRSG 241
           KPGS+S   P  K+T V+KSS+++ AIAGA+AAATQF+KK+Q+  +   Q+  P  + + 
Sbjct: 183 KPGSISALTPNLKATEVDKSSSISLAIAGAQAAATQFSKKDQNSHSTA-QNNAPTNMNAN 241

Query: 242 SKKKS--------SDGDAFNQG---TSALAENGERNLIE--HEESSSHDQPRGQLKQD-- 286
           ++           S G +  +G   ++ L++  +   +   HEE SS ++  G  KQ+  
Sbjct: 242 NEDTEVATSYNLRSQGRSMEKGNISSTKLSKTFDDLTLPSYHEEKSSRNRSEGSSKQNRS 301

Query: 287 PGA----------PSRIFAAAVKGLK 302
           PGA          PS+IFAAA+KGL+
Sbjct: 302 PGAEADLRQFPQPPSKIFAAALKGLR 327

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449443251|ref|XP_004139393.1| PREDICTED: uncharacterized protein LOC101222080 [Cucumis sativus]

 Score =  380 bits (976), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 207/337 (61%), Positives = 248/337 (73%), Gaps = 35/337 (10%)

Query: 1   MRGVRKQGNYTNPCLTMHQPWASLLVYGIKRVEGRSWPAPLRGRLWIHAASKIPEEATIK 60
           M+G R  GN++NPCLTMHQPWASLLVYGIKR+EGRSWPAPLRGRLWIHAASK+PE++TIK
Sbjct: 2   MKG-RNSGNFSNPCLTMHQPWASLLVYGIKRIEGRSWPAPLRGRLWIHAASKVPEDSTIK 60

Query: 61  AMEEFYREIYAVNGITDLQFPQHYPVSRLLGCVEVVGCVRCEELASWEVVPEGVRLEAQT 120
           AME+FYRE+YA++GITDL+FP+HYPVSRLLGCVEVVGCVR EEL +W+ VPEGVR+EAQT
Sbjct: 61  AMEDFYRELYALDGITDLKFPEHYPVSRLLGCVEVVGCVRGEELKNWDKVPEGVRVEAQT 120

Query: 121 DFCWLCENPQKLLVPFEMRGYQGVYNLEKKVYEAAVRGLTPVKGPLPVKFPLPDAQDPFS 180
           DFCWLCE PQKLL+PFEMRG+QGVYNLEK+++EAAVRGLT VK PLPVKF LPD +DPFS
Sbjct: 121 DFCWLCEQPQKLLIPFEMRGFQGVYNLEKRIFEAAVRGLTRVKCPLPVKFQLPDPRDPFS 180

Query: 181 LKPGSMSTNFPENKSTA--VEKSSTLNAAIAGARAAATQFNKKNQDLLT----------- 227
           LKPGS+S+  PE K +   V+KSS LNAAIAGARAAATQF +K QD  T           
Sbjct: 181 LKPGSVSSCSPETKGSGSEVDKSSKLNAAIAGARAAATQFTRKYQDPQTSSDFGMGSKSR 240

Query: 228 ------------NVMQDEKP---YALRSGSKKKSS--DGDAFNQGTSALAENGERNLIEH 270
                       N  QD      + +  GSK ++     D F Q +    +   R  I+ 
Sbjct: 241 TEFLGGDQFQSSNFRQDNVSRGNFEVGMGSKSRTEFLGRDQF-QSSHFRQDKVSRGNIQE 299

Query: 271 EESSSHDQPRG---QLKQDPGAPSRIFAAAVKGLKPS 304
           + S  H + +G   Q +Q   APS+IFAAAV+ LKP+
Sbjct: 300 QTSGYHVRSQGLFAQRQQQSRAPSKIFAAAVRDLKPT 336

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356576668|ref|XP_003556452.1| PREDICTED: activating signal cointegrator 1-like [Glycine max]

 Score =  375 bits (963), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 170/223 (76%), Positives = 199/223 (89%)

Query: 2   RGVRKQGNYTNPCLTMHQPWASLLVYGIKRVEGRSWPAPLRGRLWIHAASKIPEEATIKA 61
           R     GNY NPCLTMHQPWASLLVYGIKRVEGRSWPAP+ GRLWIH+ASK+PEE+TIKA
Sbjct: 3   RNHSNSGNYRNPCLTMHQPWASLLVYGIKRVEGRSWPAPITGRLWIHSASKVPEESTIKA 62

Query: 62  MEEFYREIYAVNGITDLQFPQHYPVSRLLGCVEVVGCVRCEELASWEVVPEGVRLEAQTD 121
           ME FY+EIYA+NGI+D+QFPQHYPVSRLLGCVEVVGC+  +ELA WE+VPEGVRLEAQTD
Sbjct: 63  MEYFYKEIYALNGISDIQFPQHYPVSRLLGCVEVVGCLTRDELACWEMVPEGVRLEAQTD 122

Query: 122 FCWLCENPQKLLVPFEMRGYQGVYNLEKKVYEAAVRGLTPVKGPLPVKFPLPDAQDPFSL 181
           +CWLCE PQKLL+PFEMRGYQGVYNLEKK+YEAAVRGL+PV  P+PVKFPLPD ++PFSL
Sbjct: 123 YCWLCEWPQKLLIPFEMRGYQGVYNLEKKIYEAAVRGLSPVNSPMPVKFPLPDPRNPFSL 182

Query: 182 KPGSMSTNFPENKSTAVEKSSTLNAAIAGARAAATQFNKKNQD 224
           KPGS+S      K++ V+KSS+++ AIAGA+ AATQF+KK+Q+
Sbjct: 183 KPGSISALTSNLKASEVDKSSSISLAIAGAQTAATQFSKKDQN 225

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225463984|ref|XP_002272470.1| PREDICTED: uncharacterized protein LOC100246193 [Vitis vinifera] gi|296087873|emb|CBI35156.3| unnamed protein product [Vitis vinifera]

 Score =  375 bits (963), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 194/313 (61%), Positives = 240/313 (76%), Gaps = 13/313 (4%)

Query: 5   RKQGNYTNPCLTMHQPWASLLVYGIKRVEGRSWPAPLRGRLWIHAASKIPEEATIKAMEE 64
           R   NY NPCLTMHQPWASLLVYGIKR+EGRSWPAP+RGRLWIHAASK+P+EAT+KAMEE
Sbjct: 4   RNSWNYRNPCLTMHQPWASLLVYGIKRIEGRSWPAPIRGRLWIHAASKVPDEATVKAMEE 63

Query: 65  FYREIYAVNGITDLQFPQHYPVSRLLGCVEVVGCVRCEELASWEVVPEGVRLEAQTDFCW 124
           FY+EIYAV+GI DL+FP++YPVSRLLGCV+VVGC + EELA W+ V EGVRLEA TDFCW
Sbjct: 64  FYKEIYAVDGIYDLKFPENYPVSRLLGCVQVVGCSKREELACWKEVSEGVRLEALTDFCW 123

Query: 125 LCENPQKLLVPFEMRGYQGVYNLEKKVYEAAVRGLTPVKGPLPVKFPLPDAQDPFSLKPG 184
           LCE PQKLLVPFEMRG QGVY+LE+K+YEAAVRGL PV+ PLP+KFPLP+ ++PFSLKPG
Sbjct: 124 LCEQPQKLLVPFEMRGNQGVYDLERKIYEAAVRGLAPVESPLPIKFPLPNPRNPFSLKPG 183

Query: 185 SMSTNFPENKSTAVEKSSTLNAAIAGARAAATQFNKKNQDLLTNVMQDEK--------PY 236
           S+   FPE+K+T +EKSSTL++AIAGA+AAATQF+KK+Q    + +Q+           +
Sbjct: 184 SIFARFPESKATEMEKSSTLSSAIAGAQAAATQFSKKDQSSHNDAIQNRNIINAKRIGQF 243

Query: 237 ALRSGSKKKSSDGD---AFNQGTSALAENGERNLIEHE-ESSSHDQ-PRGQLKQDPGAPS 291
             +S    KS  G+     N+GT    + G+ +  EH+   SSH+Q PR    Q    PS
Sbjct: 244 ESKSWENNKSPAGNFNKGSNRGTQLFVKQGQSSYSEHDGRISSHNQLPRAGSNQHLRPPS 303

Query: 292 RIFAAAVKGLKPS 304
           +IF  A++ L+ S
Sbjct: 304 KIFTDAMRELRLS 316

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224125692|ref|XP_002319652.1| predicted protein [Populus trichocarpa] gi|222858028|gb|EEE95575.1| predicted protein [Populus trichocarpa]

 Score =  359 bits (922), Expect = 7e-97,   Method: Compositional matrix adjust.
 Identities = 177/224 (79%), Positives = 198/224 (88%), Gaps = 10/224 (4%)

Query: 9   NYTNPCLTMHQPWASLLVYGIKRVEGRSWPAPLRGRLWIHAASKIPEEATIKAMEEFYRE 68
           NY+NPCLTMHQPWASLLVYGIKR+EGRSW AP+RG LWIHAASK+PEE TIKAME+FYRE
Sbjct: 13  NYSNPCLTMHQPWASLLVYGIKRIEGRSWTAPIRGCLWIHAASKVPEEDTIKAMEDFYRE 72

Query: 69  IYAVNGITDLQFPQHYPVSRLLG----------CVEVVGCVRCEELASWEVVPEGVRLEA 118
           IYA NGITD++FP+HYPVSRLLG          CV+VVGCVRC+ELASWE VPEGVRLE 
Sbjct: 73  IYAANGITDIKFPEHYPVSRLLGIWASVLLMSWCVDVVGCVRCDELASWEAVPEGVRLEG 132

Query: 119 QTDFCWLCENPQKLLVPFEMRGYQGVYNLEKKVYEAAVRGLTPVKGPLPVKFPLPDAQDP 178
           QTDFCWLCE P+KLLVPFEMRGYQ VYNLEKK+YEAAVRGL  V+GP+PVKFPLPD QDP
Sbjct: 133 QTDFCWLCEQPKKLLVPFEMRGYQRVYNLEKKIYEAAVRGLVSVEGPMPVKFPLPDPQDP 192

Query: 179 FSLKPGSMSTNFPENKSTAVEKSSTLNAAIAGARAAATQFNKKN 222
           FSLKPGS+S  F EN+++ VEKS +L+AAIAGARAAATQFNKK+
Sbjct: 193 FSLKPGSISEEFSENEASGVEKSESLSAAIAGARAAATQFNKKD 236

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225433114|ref|XP_002281254.1| PREDICTED: activating signal cointegrator 1-like [Vitis vinifera]

 Score =  350 bits (899), Expect = 3e-94,   Method: Compositional matrix adjust.
 Identities = 174/231 (75%), Positives = 197/231 (85%), Gaps = 1/231 (0%)

Query: 3   GVRKQGNYTNPCLTMHQPWASLLVYGIKRVEGRSWPAPLRGRLWIHAASKIPEEATIKAM 62
           G R +GNYTNPCLT+HQPWASLLVYGIKRVEGRSWPAPLRGRLWIHAASK+P+  TIKAM
Sbjct: 2   GSRSKGNYTNPCLTLHQPWASLLVYGIKRVEGRSWPAPLRGRLWIHAASKVPDSDTIKAM 61

Query: 63  EEFYREIYAVNGITDLQFPQHYPVSRLLGCVEVVGCVRCEELASWEVVPEGVRLEAQTDF 122
           E FYREIYAVNGI DL+FP+HYPVSRLLGCVEVVGCV+CEELA W+ VPEGVRLEAQT+F
Sbjct: 62  ENFYREIYAVNGIADLKFPEHYPVSRLLGCVEVVGCVKCEELACWKEVPEGVRLEAQTEF 121

Query: 123 CWLCENPQKLLVPFEMRGYQGVYNLEKKVYEAAVRGLTPVKGPLPVKFPLPDAQDPFSLK 182
           CWLCE PQKL++PFEMRGYQ +YNLE+K+YEAAVRGL PV+ PLPVKF LP+ QDP SLK
Sbjct: 122 CWLCEQPQKLIIPFEMRGYQRIYNLERKIYEAAVRGLRPVQAPLPVKFLLPEPQDPLSLK 181

Query: 183 PGSMSTNFPENKSTAVEKSSTLNAAIAGARAAATQFNKK-NQDLLTNVMQD 232
           PGS+ + F  +K+   +K   L AAIAGARAAATQF+K  N   +T   QD
Sbjct: 182 PGSLVSCFDGSKAAEDKKPEGLLAAIAGARAAATQFSKNDNHQSITMQGQD 232

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357441335|ref|XP_003590945.1| Activating signal cointegrator [Medicago truncatula] gi|355479993|gb|AES61196.1| Activating signal cointegrator [Medicago truncatula]

 Score =  350 bits (898), Expect = 5e-94,   Method: Compositional matrix adjust.
 Identities = 177/295 (60%), Positives = 215/295 (72%), Gaps = 22/295 (7%)

Query: 13  PCLTMHQPWASLLVYGIKRVEGRSWPAPLRGRLWIHAASKIPEEATIKAMEEFYREIYAV 72
           PC+TMHQPWASLLVYGIKR+EGRSWP+P++GRLWIHAA K+P+E+TIKAME FY+EIYA+
Sbjct: 19  PCITMHQPWASLLVYGIKRIEGRSWPSPIKGRLWIHAAGKVPDESTIKAMECFYKEIYAL 78

Query: 73  NGITDLQFPQHYPVSRLLGCVEVVGCVRCEELASWEVVPEGVRLEAQTDFCWLCENPQKL 132
           NGITD+ FPQHYPVSRLLGCVEVVGC+  EE++ WE+VPE VRLEA TD+CWLCE PQKL
Sbjct: 79  NGITDINFPQHYPVSRLLGCVEVVGCLNREEISCWEMVPESVRLEALTDYCWLCEQPQKL 138

Query: 133 LVPFEMRGYQGVYNLEKKVYEAAVRGLTPVKGPLPVKFPLPDAQDPFSLKPGSMSTNFPE 192
           L+PFEMRGYQGVYNLE+K+YEAAVRGL PV  PLPVKFPLPD  DPFSLKPG +S     
Sbjct: 139 LIPFEMRGYQGVYNLERKIYEAAVRGLAPVDSPLPVKFPLPDPSDPFSLKPGRVSALTRN 198

Query: 193 NKSTAVEKSSTLNAAIAGARAAATQFNKK----------NQDLLTNVMQDE--------- 233
            K+T V+KSS+L+ AIAGA AAATQF+KK          N+   T+   DE         
Sbjct: 199 LKATEVDKSSSLSLAIAGACAAATQFSKKDHNSQSADRNNKPAKTDANHDEIQAARSYNL 258

Query: 234 --KPYALRSGSKKKSSDGDAFNQGTSALAENGERNLIEHEESSSHDQ-PRGQLKQ 285
              P ++  G+       + F+ G  +     + +   ++ESSSH Q PR   +Q
Sbjct: 259 RPHPRSMEKGNIPSDELNEKFDDGDVSTDHEVKNSSKMNDESSSHHQSPRSDRRQ 313

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297832636|ref|XP_002884200.1| hypothetical protein ARALYDRAFT_900393 [Arabidopsis lyrata subsp. lyrata] gi|297330040|gb|EFH60459.1| hypothetical protein ARALYDRAFT_900393 [Arabidopsis lyrata subsp. lyrata]

 Score =  348 bits (894), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 184/329 (55%), Positives = 229/329 (69%), Gaps = 38/329 (11%)

Query: 7   QGNYTNPCLTMHQPWASLLVYGIKRVEGRSWPAPLRGRLWIHAASKIPEEATIKAMEEFY 66
           +GNY NPCLTMHQPWASLLV+GIKR+EGRSWP+P+RGRLWIHAASK+P+EATIKAMEEFY
Sbjct: 3   RGNYKNPCLTMHQPWASLLVHGIKRIEGRSWPSPIRGRLWIHAASKVPDEATIKAMEEFY 62

Query: 67  REIYAVNGITDLQFPQHYPVSRLLGCVEVVGCVRCEELASWEVVPEGVRLEAQTDFCWLC 126
           +EIYAV+GITD+QFPQHYPVSRL+GCVEVVGCV  +EL +W+ +P+GVRLE QT+FCWLC
Sbjct: 63  QEIYAVDGITDIQFPQHYPVSRLIGCVEVVGCVTSDELQNWDALPQGVRLEGQTNFCWLC 122

Query: 127 ENPQKLLVPFEMRGYQGVYNLEKKVYEAAVRGLTPVKGPLPVKFPLPDAQDPFSLKPGSM 186
           E PQKL++PFEMRGYQGVYNLE K+Y AA RGL P +    VKFPLPD +DPFSLKPGS+
Sbjct: 123 EQPQKLIIPFEMRGYQGVYNLENKIYVAAARGLMPSQNSFKVKFPLPDPKDPFSLKPGSI 182

Query: 187 STNFPENKSTAVEKSSTLNAAIAGARAAATQFNKKNQDLLTNVMQDEKPYALRSGSKKKS 246
                E K+   E+ ++L AAIAGA+AAATQF+KK Q L TN + D   Y  R  SK+K 
Sbjct: 183 PCTIQEKKALDSEQVTSLTAAIAGAKAAATQFSKKGQSLQTNNIFD---YTTR--SKRKG 237

Query: 247 SDGDAFNQGTSALAENG---ERNLIEHEESS----------------------------- 274
            + DA     + +  +G   +R      ++                              
Sbjct: 238 IEDDASESLDNPVLGSGGTPDRTYTTRSKNKGTQMGEEVCSESSSSRVESSQRSVVTKRE 297

Query: 275 SHDQPRGQLKQDPGAPSRIFAAAVKGLKP 303
             +   G+ + DPG+ +RI AAA++ LKP
Sbjct: 298 DRNTSIGERRFDPGS-ARIMAAAIRNLKP 325

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	304
TAIR|locus:2038947	339	AT2G20410 "AT2G20410" [Arabido	0.743	0.666	0.593	1.7e-80
MGI|MGI:1928469	581	Trip4 "thyroid hormone recepto	0.457	0.239	0.383	4.1e-22
UNIPROTKB|Q15650	581	TRIP4 "Activating signal coint	0.457	0.239	0.376	1.1e-21
UNIPROTKB|F6UYL9	581	TRIP4 "Uncharacterized protein	0.457	0.239	0.369	3e-21
UNIPROTKB|E2QU39	584	TRIP4 "Uncharacterized protein	0.457	0.238	0.369	3e-21
UNIPROTKB|F1S0A8	550	TRIP4 "Uncharacterized protein	0.457	0.252	0.369	5.5e-21
ZFIN|ZDB-GENE-040724-92	564	trip4 "thyroid hormone recepto	0.457	0.246	0.390	9.7e-21
UNIPROTKB|E1C1A8	581	TRIP4 "Uncharacterized protein	0.470	0.246	0.366	1e-20
FB|FBgn0031115	513	CG11710 [Drosophila melanogast	0.453	0.269	0.383	1.6e-20
UNIPROTKB|F1N1K2	579	TRIP4 "Uncharacterized protein	0.460	0.241	0.356	4.6e-20

TAIR|locus:2038947 AT2G20410 "AT2G20410" [Arabidopsis thaliana (taxid:3702)]

 Score = 759 (272.2 bits), Expect = 1.7e-80, Sum P(2) = 1.7e-80
 Identities = 140/236 (59%), Positives = 170/236 (72%)

Query:     7 QGNYTNPCLTMHQPWASLLVYGIKRVEGRSWPAPLRGRLWIHAASKIPEEATIKAMEEFY 66
             +GNY NPCLTMHQPWASLLV+GIKR+EGRSWP+P+RGRLWIHAASK+P+EATIKAMEEFY
Sbjct:     3 RGNYKNPCLTMHQPWASLLVHGIKRIEGRSWPSPIRGRLWIHAASKVPDEATIKAMEEFY 62

Query:    67 REIYAVNGITDLQFPQHYPVSXXXXXXXXXXXXXXXXXASWEVVPEGVRLEAQTDFCWLC 126
             ++IYAV+GITD+QFPQHYPVS                  +W+ +P+GVRLE QT+FCWLC
Sbjct:    63 QQIYAVDGITDIQFPQHYPVSRLIGCVEVVGCVTSDELQNWDALPQGVRLEGQTNFCWLC 122

Query:   127 ENPQKLLVPFEMRGYQGVYNLEKKVYEAAVRGLTPVKGPLPVKFPLPDAQDPFSLKPGSM 186
             E PQKL++PFEMRGYQGVYNLE K+Y AA RGL P +    VKFPLPD +DPFSLKPGS+
Sbjct:   123 EKPQKLIIPFEMRGYQGVYNLENKIYVAAARGLMPSQNSFKVKFPLPDPKDPFSLKPGSI 182

Query:   187 STNFPENK----------STAVEKSSTLNXXXXXXXXXXTQFNKKNQDLLTNVMQD 232
                  E K          + A+++ ++L           TQF+KK Q L TN + D
Sbjct:   183 PCTMQEKKELDSKQVTSLTAAIKQVTSLTAAIAGAKAAATQFSKKGQSLQTNNIFD 238

GO:0008150 "biological_process" evidence=ND

MGI|MGI:1928469 Trip4 "thyroid hormone receptor interactor 4" [Mus musculus (taxid:10090)]

 Score = 265 (98.3 bits), Expect = 4.1e-22, P = 4.1e-22
 Identities = 56/146 (38%), Positives = 82/146 (56%)

Query:    14 CLTMHQPWASLLVYGIKRVEGRSWPAPLRGRLWIHAASKIPEEATIKAMEEFYREIYAVN 73
             CL+MHQPWASLLV GIKRVEGRSW  P RGRLWI A  K P    +  ++  YR    + 
Sbjct:   436 CLSMHQPWASLLVRGIKRVEGRSWYTPHRGRLWIAATGKRPSPQEVSELQATYR---LLR 492

Query:    74 GITDLQFPQHYPVSXXXXXXXXXXXXXXXXXASWEVVPEGVRLEAQTDFCWLCENPQKLL 133
             G  D++FP  YP                      E  P+ +  E+ + F ++C+NPQ+++
Sbjct:   493 G-KDVEFPNDYPSGCLLGCVDLIDCLSQKQFQ--EQFPD-ISQESDSSFVFICKNPQEMV 548

Query:   134 VPFEMRGYQGVYNLEKKVYEAAVRGL 159
             V F ++G   ++ L+ K+++ A +GL
Sbjct:   549 VKFPIKGNPKIWKLDSKIHQGAKKGL 574

GO:0005634 "nucleus" evidence=ISO

GO:0005737 "cytoplasm" evidence=ISO

GO:0005856 "cytoskeleton" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0008270 "zinc ion binding" evidence=IEA

GO:0016922 "ligand-dependent nuclear receptor binding" evidence=ISO

GO:0046872 "metal ion binding" evidence=IEA

UNIPROTKB|Q15650 TRIP4 "Activating signal cointegrator 1" [Homo sapiens (taxid:9606)]

 Score = 261 (96.9 bits), Expect = 1.1e-21, P = 1.1e-21
 Identities = 55/146 (37%), Positives = 83/146 (56%)

Query:    14 CLTMHQPWASLLVYGIKRVEGRSWPAPLRGRLWIHAASKIPEEATIKAMEEFYREIYAVN 73
             CL++HQPWASLLV GIKRVEGRSW  P RGRLWI A +K P    +  ++  YR    + 
Sbjct:   436 CLSVHQPWASLLVRGIKRVEGRSWYTPHRGRLWIAATAKKPSPQEVSELQATYR---LLR 492

Query:    74 GITDLQFPQHYPVSXXXXXXXXXXXXXXXXXASWEVVPEGVRLEAQTDFCWLCENPQKLL 133
             G  D++FP  YP                      E  P+ +  E+ + F ++C+NPQ+++
Sbjct:   493 G-KDVEFPNDYPSGCLLGCVDLIDCLSQKQFK--EQFPD-ISQESDSPFVFICKNPQEMV 548

Query:   134 VPFEMRGYQGVYNLEKKVYEAAVRGL 159
             V F ++G   ++ L+ K+++ A +GL
Sbjct:   549 VKFPIKGNPKIWKLDSKIHQGAKKGL 574

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005815 "microtubule organizing center" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0016922 "ligand-dependent nuclear receptor binding" evidence=IDA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=NAS

GO:0003713 "transcription coactivator activity" evidence=TAS

GO:0006366 "transcription from RNA polymerase II promoter" evidence=TAS

GO:0005730 "nucleolus" evidence=IDA

UNIPROTKB|F6UYL9 TRIP4 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 257 (95.5 bits), Expect = 3.0e-21, P = 3.0e-21
 Identities = 54/146 (36%), Positives = 82/146 (56%)

Query:    14 CLTMHQPWASLLVYGIKRVEGRSWPAPLRGRLWIHAASKIPEEATIKAMEEFYREIYAVN 73
             CL+MHQPWASLLV GIKRVEGR+W  P RGRLWI A +K P    +  ++  YR    + 
Sbjct:   436 CLSMHQPWASLLVRGIKRVEGRNWYTPHRGRLWIAATAKRPSPQEVSELQTTYR---VLR 492

Query:    74 GITDLQFPQHYPVSXXXXXXXXXXXXXXXXXASWEVVPEGVRLEAQTDFCWLCENPQKLL 133
             G  D++FP  YP                      +  P+ +  E+ + F ++C NPQ+++
Sbjct:   493 G-KDVEFPNDYPSGCLLGCVDLIDCLSQKQFK--DQYPD-MSQESDSPFVFICTNPQEMI 548

Query:   134 VPFEMRGYQGVYNLEKKVYEAAVRGL 159
             V F ++G   ++ L+ K+++ A +GL
Sbjct:   549 VKFPIKGNPKIWKLDSKIHQGAKKGL 574

GO:0008270 "zinc ion binding" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

UNIPROTKB|E2QU39 TRIP4 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 257 (95.5 bits), Expect = 3.0e-21, P = 3.0e-21
 Identities = 54/146 (36%), Positives = 82/146 (56%)

Query:    14 CLTMHQPWASLLVYGIKRVEGRSWPAPLRGRLWIHAASKIPEEATIKAMEEFYREIYAVN 73
             CL+MHQPWASLLV GIKRVEGR+W  P RGRLWI A +K P    +  ++  YR    + 
Sbjct:   439 CLSMHQPWASLLVRGIKRVEGRNWYTPHRGRLWIAATAKRPSPQEVSELQTTYR---VLR 495

Query:    74 GITDLQFPQHYPVSXXXXXXXXXXXXXXXXXASWEVVPEGVRLEAQTDFCWLCENPQKLL 133
             G  D++FP  YP                      +  P+ +  E+ + F ++C NPQ+++
Sbjct:   496 G-KDVEFPNDYPSGCLLGCVDLIDCLSQKQFK--DQYPD-MSQESDSPFVFICTNPQEMI 551

Query:   134 VPFEMRGYQGVYNLEKKVYEAAVRGL 159
             V F ++G   ++ L+ K+++ A +GL
Sbjct:   552 VKFPIKGNPKIWKLDSKIHQGAKKGL 577

GO:0008270 "zinc ion binding" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

UNIPROTKB|F1S0A8 TRIP4 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 254 (94.5 bits), Expect = 5.5e-21, P = 5.5e-21
 Identities = 54/146 (36%), Positives = 81/146 (55%)

Query:    14 CLTMHQPWASLLVYGIKRVEGRSWPAPLRGRLWIHAASKIPEEATIKAMEEFYREIYAVN 73
             CL+MHQPWASLLV GIKRVEGRSW  P RGRLWI A +K P    +  ++  Y     + 
Sbjct:   405 CLSMHQPWASLLVRGIKRVEGRSWYTPHRGRLWIAATAKRPSPQEVSELQTTY---LVLR 461

Query:    74 GITDLQFPQHYPVSXXXXXXXXXXXXXXXXXASWEVVPEGVRLEAQTDFCWLCENPQKLL 133
             G  D++FP  YP                      +  P+ +  E+ + F ++C NPQ+++
Sbjct:   462 G-KDVEFPNDYPSGCLLGCVDLIDCLSQKQFK--DQYPD-MSQESDSPFVFICTNPQEMI 517

Query:   134 VPFEMRGYQGVYNLEKKVYEAAVRGL 159
             V F ++G   ++ L+ K+++ A +GL
Sbjct:   518 VKFPIKGNPKIWKLDSKIHQGAKKGL 543

GO:0016922 "ligand-dependent nuclear receptor binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

ZFIN|ZDB-GENE-040724-92 trip4 "thyroid hormone receptor interactor 4" [Danio rerio (taxid:7955)]

 Score = 252 (93.8 bits), Expect = 9.7e-21, P = 9.7e-21
 Identities = 57/146 (39%), Positives = 79/146 (54%)

Query:    14 CLTMHQPWASLLVYGIKRVEGRSWPAPLRGRLWIHAASKIPEEATIKAMEEFYREIYAVN 73
             CL+MHQPWASLLV GIKRVEGR+W    RGRLWI AA+  P    I  +E  YR +Y   
Sbjct:   422 CLSMHQPWASLLVKGIKRVEGRTWYTSHRGRLWIAAAANRPTPQEIAEVEAMYRHLYK-- 479

Query:    74 GITDLQFPQHYPVSXXXXXXXXXXXXXXXXXASWEVVPEGVRLEAQTDFCWLCENPQKLL 133
                + QFP  YP                      E  P+ +  E+ + F ++C NPQ+L+
Sbjct:   480 --HEPQFPAEYPTGCLLGCVNVSDCLSQEQFR--EQYPQ-ISEESTSPFVFICSNPQELV 534

Query:   134 VPFEMRGYQGVYNLEKKVYEAAVRGL 159
             V F M+G   ++ LE + +++A + L
Sbjct:   535 VKFPMKGKHKIWKLESQSHQSAKKCL 560

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

UNIPROTKB|E1C1A8 TRIP4 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 252 (93.8 bits), Expect = 1.0e-20, P = 1.0e-20
 Identities = 55/150 (36%), Positives = 81/150 (54%)

Query:    14 CLTMHQPWASLLVYGIKRVEGRSWPAPLRGRLWIHAASKIPEEATIKAMEEFYREIYAVN 73
             CL+MHQPWASLL+ GIKRVEGR+W    RGRLWI A +K P    I  +E  YR +    
Sbjct:   436 CLSMHQPWASLLIRGIKRVEGRTWYTSHRGRLWIAATAKRPSPQEISELETTYRMLLR-- 493

Query:    74 GITDLQFPQHYPVSXXXXXXXXXXXXXXXXXASWEVVPEGVRLEAQTDFCWLCENPQKLL 133
                D++FP  YP                      E  P+ +  E+ + F ++C NPQ+++
Sbjct:   494 --KDVEFPNEYPSGCLLGCVDVTDCLSQEQFN--EQYPD-LSQESGSPFVFICTNPQEMV 548

Query:   134 VPFEMRGYQGVYNLEKKVYEAAVRGLTPVK 163
             V F ++G   ++ L+ K+++ A +GL   K
Sbjct:   549 VKFPIKGKPKIWKLDSKIHQGAKKGLMKQK 578

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0016922 "ligand-dependent nuclear receptor binding" evidence=IEA

FB|FBgn0031115 CG11710 [Drosophila melanogaster (taxid:7227)]

 Score = 249 (92.7 bits), Expect = 1.6e-20, P = 1.6e-20
 Identities = 56/146 (38%), Positives = 78/146 (53%)

Query:    14 CLTMHQPWASLLVYGIKRVEGRSWPAPLRGRLWIHAASKIPEEATIKAMEEFYREIYAVN 73
             CL+MHQPWASLLV GIK+ EGR W +  RGRLWI + SK P    I  ME FY+ +Y   
Sbjct:   368 CLSMHQPWASLLVAGIKKHEGRVWYSEHRGRLWIASTSKEPHAEDIAQMEGFYKVLY--- 424

Query:    74 GITDLQFPQHYPVSXXXXXXXXXXXXXXXXXASWEVVPEGVRLEAQTDFCWLCENPQKLL 133
             G  D++FP HYP S                    E+ P G   E+++ + ++C  P++L 
Sbjct:   425 GDPDIKFPSHYPTSSLLGCVHVDSCLPQEEYR--ELYPNG---ESESPYVFVCTKPEQLN 479

Query:   134 VPFEMRGYQGVYNLEKKVYEAAVRGL 159
             +   + G   +Y L  K + AA + L
Sbjct:   480 ILLPVHGDHKIYELPLKTHTAACKTL 505

GO:0016922 "ligand-dependent nuclear receptor binding" evidence=ISS

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

UNIPROTKB|F1N1K2 TRIP4 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 246 (91.7 bits), Expect = 4.6e-20, P = 4.6e-20
 Identities = 52/146 (35%), Positives = 80/146 (54%)

Query:    14 CLTMHQPWASLLVYGIKRVEGRSWPAPLRGRLWIHAASKIPEEATIKAMEEFYREIYAVN 73
             CL+MHQPWASLLV GIKRVEGR+W  P RGRLWI A +K P    +  ++  Y  +    
Sbjct:   433 CLSMHQPWASLLVRGIKRVEGRNWYTPHRGRLWIAATAKRPSPQEVSELQTTYLLLRG-K 491

Query:    74 GITDLQFPQHYPVSXXXXXXXXXXXXXXXXXASWEVVPEGVRLEAQTDFCWLCENPQKLL 133
             G+   +FP  YP                      +  P+  + E+ + F ++C NPQ+++
Sbjct:   492 GV---EFPSDYPSGCLLGCVDLIDCLSQKQFK--DQYPDISQEESDSPFVFICTNPQEMI 546

Query:   134 VPFEMRGYQGVYNLEKKVYEAAVRGL 159
             V F ++G   ++ L+ K+++ A +GL
Sbjct:   547 VKFPIKGNPKIWKLDSKIHQGAKKGL 572

GO:0016922 "ligand-dependent nuclear receptor binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	304
cd06554	113	cd06554, ASCH_ASC-1_like, ASC-1 homology domain, A	4e-46
pfam04266	104	pfam04266, ASCH, ASCH domain	6e-08
smart01022	99	smart01022, ASCH, The ASCH domain adopts a beta-ba	6e-07

>gnl|CDD|119346 cd06554, ASCH_ASC-1_like, ASC-1 homology domain, ASC-1-like subfamily

 Score =  151 bits (383), Expect = 4e-46
 Identities = 55/120 (45%), Positives = 75/120 (62%), Gaps = 8/120 (6%)

Query: 13  PCLTMHQPWASLLVYGIKRVEGRSWPAPLRGRLWIHAASKIPEEATIKAMEEFYREIYAV 72
             L++HQPWASL+V GIKR+EGRSW    RGRLWIHA++K+P +  I+ +EEFYR +Y  
Sbjct: 2   KALSIHQPWASLIVRGIKRIEGRSWATNYRGRLWIHASAKLPTKLDIEEVEEFYRILY-- 59

Query: 73  NGITDLQFPQHYPVSRLLGCVEVVGCVRCEELASWEVVPEGVRLEAQTDFCWLCENPQKL 132
               D++ P  YP   LLGCV+VV C+  EE       P G     ++ + W+  NP+ L
Sbjct: 60  --KLDIELPTGYPTGCLLGCVDVVDCLTQEEYREQ--YPWGKS--EESPYAWVLANPRPL 113

The ASCH domain, a small beta-barrel domain found in all three kingdoms of life, resembles the RNA-binding PUA domain and may also interact with RNA. ASCH has been proposed to function as an RNA-binding domain during coactivation, RNA-processing and the regulation of prokaryotic translation. The domain has been named after the ASC-1 protein, the activating signal cointegrator 1 or thyroid hormone receptor interactor protein 4 (TRIP4). ASC-1 is conserved in many eukaryotes and has been suggested to participate in a protein complex that interacts with RNA. It has been shown that ASC-1 mediates the interaction between various transciption factors and the basal transcriptional machinery. Length = 113

>gnl|CDD|217998 pfam04266, ASCH, ASCH domain

 Score = 49.7 bits (119), Expect = 6e-08
 Identities = 14/49 (28%), Positives = 18/49 (36%), Gaps = 2/49 (4%)

Query: 15 LTMHQPWASLLVYGIKRVEGRSW--PAPLRGRLWIHAASKIPEEATIKA 61
          L+  Q +A L++ G K  E R W  P P  G L I              
Sbjct: 1  LSFGQEYADLILSGKKTAEYRLWDEPLPQVGDLLILFELNGGGRPVGVI 49

The ASCH domain adopts a beta-barrel fold similar to the pfam01472 domain. It is thought to function as an RNA-binding domain during coactivation, RNA-processing and possibly during prokaryotic translation regulation. Length = 104

>gnl|CDD|214979 smart01022, ASCH, The ASCH domain adopts a beta-barrel fold similar to that of the PUA domain

 Score = 46.6 bits (111), Expect = 6e-07
 Identities = 13/61 (21%), Positives = 18/61 (29%), Gaps = 2/61 (3%)

Query: 15 LTMHQPWASLLVYGIKRVEGRSW--PAPLRGRLWIHAASKIPEEATIKAMEEFYREIYAV 72
          L+     A L++ G K    R    P P  G L I    +      I+           V
Sbjct: 1  LSFKDELADLILSGKKTATIRLENEPLPKVGDLLIVLDGEGKPVCVIEVTSVEIIPFKDV 60

Query: 73 N 73
           
Sbjct: 61 T 61

It is thought to function as an RNA-binding domain during coactivation, RNA-processing and possibly during prokaryotic translation regulation. Length = 99

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	304
cd06554	113	ASCH_ASC-1_like ASC-1 homology domain, ASC-1-like	100.0
KOG2845	505	consensus Activating signal cointegrator 1 [Transc	99.09
PF04266	105	ASCH: ASCH domain; InterPro: IPR007374 The ASCH do	98.58
KOG2845	505	consensus Activating signal cointegrator 1 [Transc	97.94
PRK12279	311	50S ribosomal protein L22/unknown domain fusion pr	96.95
COG4933	124	Uncharacterized conserved protein [Function unknow	95.05
cd06541	105	ASCH ASC-1 homology or ASCH domain, a small beta-b	84.94
cd06552	100	ASCH_yqfb_like ASC-1 homology domain, subfamily si	83.0

>cd06554 ASCH_ASC-1_like ASC-1 homology domain, ASC-1-like subfamily

Probab=100.00  E-value=2.9e-33  Score=232.63  Aligned_cols=113  Identities=48%  Similarity=0.951  Sum_probs=92.6

Q ss_pred             cceeeecchHHHHHHhcceeeeeccCCCCCCccEEEEeccCCChHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCcceEEE
Q 036173           12 NPCLTMHQPWASLLVYGIKRVEGRSWPAPLRGRLWIHAASKIPEEATIKAMEEFYREIYAVNGITDLQFPQHYPVSRLLG   91 (304)
Q Consensus        12 mKALSIrQPWAsLIv~G~K~IEnRSW~T~yRGpLlIHASkk~~~~~~i~a~e~fyr~il~~~G~~~~~~P~~~P~GaIIG   91 (304)
                      |||||||||||+||++|.|+||||+|+|+|||+|+|||++|......+.++++||+.+    +....+||+.+|+|+|+|
T Consensus         1 ~~~lsi~qPwa~li~~g~K~~E~R~w~t~~rG~~~i~a~~k~~~~~~~~~~~~~~~~~----~~~~~~lp~~~~~g~i~G   76 (113)
T cd06554           1 MKALSIHQPWASLIVRGIKRIEGRSWATNYRGRLWIHASAKLPTKLDIEEVEEFYRIL----YKLDIELPTGYPTGCLLG   76 (113)
T ss_pred             CceeEEeCcHHHHHHcCCCceecccCCCCccccEEEEEcCCCCCHHHHHHHHHHhhhc----ccccccCCCCCceEEEEE
Confidence            7999999999999999999999999999999999999998777777788888887643    233467899999999999


Q ss_pred             EEEEeceeeccccccccccccccccccCcceEEeccCCeec
Q 036173           92 CVEVVGCVRCEELASWEVVPEGVRLEAQTDFCWLCENPQKL  132 (304)
Q Consensus        92 vVdLVDCl~~ee~s~W~~~peg~~Le~~g~YaWvL~Npr~L  132 (304)
                      +|+++||+..+++..  ..+.+..  .++.|+|+|+||++|
T Consensus        77 ~v~vvdc~~~e~~~~--~~~~~~~--~~g~y~wvl~npr~l  113 (113)
T cd06554          77 CVDVVDCLTQEEYRE--QYPWGKS--EESPYAWVLANPRPL  113 (113)
T ss_pred             EEEEEecccHHHhhc--cCccccc--cCCCEEEEeCCCEeC
Confidence            999999998665431  1111110  147899999999986

The ASCH domain, a small beta-barrel domain found in all three kingdoms of life, resembles the RNA-binding PUA domain and may also interact with RNA. ASCH has been proposed to function as an RNA-binding domain during coactivation, RNA-processing and the regulation of prokaryotic translation. The domain has been named after the ASC-1 protein, the activating signal cointegrator 1 or thyroid hormone receptor interactor protein 4 (TRIP4). ASC-1 is conserved in many eukaryotes and has been suggested to participate in a protein complex that interacts with RNA. It has been shown that ASC-1 mediates the interaction between various transciption factors and the basal transcriptional machinery.

>KOG2845 consensus Activating signal cointegrator 1 [Transcription]

Probab=99.09  E-value=1.2e-11  Score=124.16  Aligned_cols=112  Identities=41%  Similarity=0.770  Sum_probs=94.8

Q ss_pred             cccceeeecchHHHHHHhcceeeeeccCCCCCCccEEEEeccCCChHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCcceE
Q 036173           10 YTNPCLTMHQPWASLLVYGIKRVEGRSWPAPLRGRLWIHAASKIPEEATIKAMEEFYREIYAVNGITDLQFPQHYPVSRL   89 (304)
Q Consensus        10 ~~mKALSIrQPWAsLIv~G~K~IEnRSW~T~yRGpLlIHASkk~~~~~~i~a~e~fyr~il~~~G~~~~~~P~~~P~GaI   89 (304)
                      ....++|++||||++|+.|.+.++.|.|...|||+++|-+.++.+....|.++..+|..+...     + ++-+||.|++
T Consensus       393 v~~~~~s~~qp~as~l~~g~~r~~~~~~~~~h~~~~~i~~ta~~~~~~~iqe~~~~y~~~~~~-----~-~~~~~~~~~~  466 (505)
T KOG2845|consen  393 VTGDCLSVHQPWASLLVNGSRRVEGRDLYSRHRGRLEIAATAKLPNWLHIQEKAGDYERLRGK-----I-FEVDYPSGSL  466 (505)
T ss_pred             cccchhhccCCCcccccccccccccccccccccchhhhhhhccCCchhhHHHHhccHHHhhcc-----c-ccccCCchhh
Confidence            456799999999999999999999999999999999999999999888888998888765432     3 6789999999


Q ss_pred             EEEEEEeceeeccccccccccccccccccCcceEEeccCCeec
Q 036173           90 LGCVEVVGCVRCEELASWEVVPEGVRLEAQTDFCWLCENPQKL  132 (304)
Q Consensus        90 IGvVdLVDCl~~ee~s~W~~~peg~~Le~~g~YaWvL~Npr~L  132 (304)
                      +|+|.|.+|...+++.  +..+   .-++++.|+++|.||..|
T Consensus       467 ~~~~~~~~~~~~~q~~--~~~~---~q~~d~~~v~v~~n~~~~  504 (505)
T KOG2845|consen  467 LGCVKVDECLHLEQFY--DLYP---SQESDSPFVFVCKNPEEL  504 (505)
T ss_pred             hcchHHHHhhhHHHHH--Hhcc---CCCCCCCceEEecChhhc
Confidence            9999999999876643  2223   235689999999999876

>PF04266 ASCH: ASCH domain; InterPro: IPR007374 The ASCH domain adopts a beta-barrel fold similar to that of the PUA domain (IPR002478 from INTERPRO)

Probab=98.58  E-value=1.5e-07  Score=74.74  Aligned_cols=55  Identities=31%  Similarity=0.474  Sum_probs=48.7

Q ss_pred             eeecchHHHHHHhcceeeeeccCCCC---CCccEEEEeccCCChHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCcceEEE
Q 036173           15 LTMHQPWASLLVYGIKRVEGRSWPAP---LRGRLWIHAASKIPEEATIKAMEEFYREIYAVNGITDLQFPQHYPVSRLLG   91 (304)
Q Consensus        15 LSIrQPWAsLIv~G~K~IEnRSW~T~---yRGpLlIHASkk~~~~~~i~a~e~fyr~il~~~G~~~~~~P~~~P~GaIIG   91 (304)
                      |||++||+.+|+.|.|++|.|.|.++   +||.++|+.+..                                +.|.++|
T Consensus         1 Lsi~~~~~~~Il~G~Kt~e~R~~~~~~~~~~g~~~iv~~~~--------------------------------~~~~~~~   48 (105)
T PF04266_consen    1 LSIKPEYAELILSGKKTAEIRLWDEKLPKIRGDLVIVFNTD--------------------------------PDGKPVG   48 (105)
T ss_dssp             EEECHHHHHHHHTTSSCEEEECSTTTCCTTTTCEEEEETET--------------------------------TTTEEEE
T ss_pred             CEechHHHHHHHCCCcEEEEEcccceeccCCCCEEEEEEEe--------------------------------cCCcEEE
Confidence            79999999999999999999999988   789999995542                                3578999


Q ss_pred             EEEEeceeec
Q 036173           92 CVEVVGCVRC  101 (304)
Q Consensus        92 vVdLVDCl~~  101 (304)
                      .|++++|...
T Consensus        49 ~v~v~~V~~~   58 (105)
T PF04266_consen   49 IVEVTEVEVY   58 (105)
T ss_dssp             EEEEEEEEEE
T ss_pred             EEEEEEEEEe
Confidence            9999999875

It is thought to function as an RNA-binding domain during coactivation, RNA-processing and possibly during prokaryotic translation regulation [].; PDB: 1TE7_A 2Z0T_C 1WK2_A 2DP9_A 1T62_A 3S9X_A 2E5O_A 1XNE_A 3IUW_B 1S04_A.

>KOG2845 consensus Activating signal cointegrator 1 [Transcription]

Probab=97.94  E-value=1.3e-06  Score=88.41  Aligned_cols=177  Identities=23%  Similarity=0.188  Sum_probs=118.0

Q ss_pred             CCCCcccceeeecchHHH--HHHhcceeeeeccCCCCCCccEEEEeccCCChHHHHHHHHHHHHHHHHhcCCCCCCCCCC
Q 036173            6 KQGNYTNPCLTMHQPWAS--LLVYGIKRVEGRSWPAPLRGRLWIHAASKIPEEATIKAMEEFYREIYAVNGITDLQFPQH   83 (304)
Q Consensus         6 ~~~~~~mKALSIrQPWAs--LIv~G~K~IEnRSW~T~yRGpLlIHASkk~~~~~~i~a~e~fyr~il~~~G~~~~~~P~~   83 (304)
                      +.+.++..+|.|+|||+.  .++.|.|..+.+.|+.+.++..|+|                                   
T Consensus       132 k~k~~k~inl~i~~~e~s~~i~~~grk~C~CQg~kHpLi~NCL~C-----------------------------------  176 (505)
T KOG2845|consen  132 KGKSLKNINLAIRQPEASLAILLKGRKPCNCQGRKHPLINNCLGC-----------------------------------  176 (505)
T ss_pred             cccccccHHHHhccHHHhhhhhhcCCccccccCCcCchhhccccc-----------------------------------
Confidence            346678889999999999  8899999999999998877755543                                   


Q ss_pred             CCcceEEEEEEEec-eeeccccccccccccccccccCcceEEeccCCeecccceeccCcCCCccCCHHHHHHHHhcccCC
Q 036173           84 YPVSRLLGCVEVVG-CVRCEELASWEVVPEGVRLEAQTDFCWLCENPQKLLVPFEMRGYQGVYNLEKKVYEAAVRGLTPV  162 (304)
Q Consensus        84 ~P~GaIIGvVdLVD-Cl~~ee~s~W~~~peg~~Le~~g~YaWvL~Npr~L~~PIPvkG~lGIw~vd~~l~~aa~~gL~~v  162 (304)
                         |.||+..+=.+ |..+...-   .. .+.    ++-+.=. .| +.|..     |.-.|=+-....+....+.|++-
T Consensus       177 ---GkIVCeQEGsGPC~fCg~~V---~t-~ee----q~~l~~~-~n-~~~l~-----G~~~iss~~~~A~~~k~klLe~d  238 (505)
T KOG2845|consen  177 ---GKIVCEQEGSGPCGFCGTPV---CT-REE----QGILNRE-LN-QKLLK-----GKVSISSALEKAYVHKDKLLEYD  238 (505)
T ss_pred             ---ceeEEEecCcccccccCCee---ec-hhH----HHHHHHH-hh-hhhcc-----CccccchhhhhHHHHHhhhcccc
Confidence               34554433222 32222110   00 000    0000000 11 22221     55545554556777888999999


Q ss_pred             CCCCcccccCCCCCCCCccCCCC-ccccCCCCccc----------ccccchhHHHHHhhhHHHhhhhhcccccccccccc
Q 036173          163 KGPLPVKFPLPDAQDPFSLKPGS-MSTNFPENKST----------AVEKSSTLNAAIAGARAAATQFNKKNQDLLTNVMQ  231 (304)
Q Consensus       163 ~~~~p~~~~~~~~~~~~s~~p~~-~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  231 (304)
                      ...--.++.++|+.|+|++++++ +++.-.+....          +..+...|+.++||+.+++++++.+.+.+.++..+
T Consensus       239 ~nS~rrt~viddqsDyf~~~s~~wlS~~erE~l~k~~eE~eelea~eR~~~~~t~DfaGrk~~~e~~~~~E~~~~~~~~~  318 (505)
T KOG2845|consen  239 RNSERRTKVIDDQSDYFSLESSSWLSALEREKLEKRQEELEELEAAERQKVKLTFDFAGRKALEEETSIKEYESRLDNIL  318 (505)
T ss_pred             ccccccccccCCcchhhhccccccccHHHHHHHHhhHHHHHHHHHHHhhheeeeeeccccccccchhhhhhHhhcccccc
Confidence            99999999999999999999998 45443322111          33456678899999999999999999998888777


Q ss_pred             cCCc
Q 036173          232 DEKP  235 (304)
Q Consensus       232 ~~~~  235 (304)
                      +.-+
T Consensus       319 ~~~t  322 (505)
T KOG2845|consen  319 DAIT  322 (505)
T ss_pred             chhh
Confidence            6533

>PRK12279 50S ribosomal protein L22/unknown domain fusion protein; Provisional

Probab=96.95  E-value=0.0021  Score=62.45  Aligned_cols=98  Identities=13%  Similarity=0.099  Sum_probs=72.2

Q ss_pred             CCCcccceeeecchHHHHHHhc-ceeeeecc-CCCCCCccEEEEeccCCChHHHHHHHHHHHHHHHHhcCCCCCCCCCCC
Q 036173            7 QGNYTNPCLTMHQPWASLLVYG-IKRVEGRS-WPAPLRGRLWIHAASKIPEEATIKAMEEFYREIYAVNGITDLQFPQHY   84 (304)
Q Consensus         7 ~~~~~mKALSIrQPWAsLIv~G-~K~IEnRS-W~T~yRGpLlIHASkk~~~~~~i~a~e~fyr~il~~~G~~~~~~P~~~   84 (304)
                      ..++..--|||+.=||..|+.| .|++|-|- ++..-...++|.+|+                                 
T Consensus       185 ~~~~~~vLLSIKPeyaekIl~G~~K~~EfRK~~~~~~~~~VvIYaTs---------------------------------  231 (311)
T PRK12279        185 EETTETIMISTSPKNAQVLFDDLEKNVIFYKTTPVNKVLRVLVYVTS---------------------------------  231 (311)
T ss_pred             ccCCcEEEEEeCHHHHHHHhCCCceEEEEEeccCCCCCCEEEEEecC---------------------------------
Confidence            4567778899999999999999 59999986 443223478888764                                 


Q ss_pred             CcceEEEEEEEeceeeccccccccccccccc---------cc-cCcceEEeccCCeeccccee
Q 036173           85 PVSRLLGCVEVVGCVRCEELASWEVVPEGVR---------LE-AQTDFCWLCENPQKLLVPFE  137 (304)
Q Consensus        85 P~GaIIGvVdLVDCl~~ee~s~W~~~peg~~---------Le-~~g~YaWvL~Npr~L~~PIP  137 (304)
                      |.|.|||.++|.+++..+--..|......-.         .. .+..|+..+.+++.+..|+.
T Consensus       232 PvkkIVGef~i~~Ii~~~P~~lW~k~~~~sGIsk~~F~~Yf~g~~~a~Ai~I~~~~~y~~Pi~  294 (311)
T PRK12279        232 PTKKVVGEFDLESVEIGAISSIWRKYGKQSVISKKEYDAYYEGKDKAHALVSKKAYKYRNPKD  294 (311)
T ss_pred             CCcEEEEEEEEEEEEeCCHHHHHHHHhhccCCCHHHHHHHhCCCceEEEEEeCCceeCCCCCC
Confidence            5689999999999998544345643211101         11 13569999999999999986

>COG4933 Uncharacterized conserved protein [Function unknown]

Probab=95.05  E-value=0.07  Score=45.89  Aligned_cols=90  Identities=17%  Similarity=0.279  Sum_probs=61.7

Q ss_pred             eeecchHHHHHHhcceeeeeccCCC--CCCcc-EEEEeccCCChHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCcceEEE
Q 036173           15 LTMHQPWASLLVYGIKRVEGRSWPA--PLRGR-LWIHAASKIPEEATIKAMEEFYREIYAVNGITDLQFPQHYPVSRLLG   91 (304)
Q Consensus        15 LSIrQPWAsLIv~G~K~IEnRSW~T--~yRGp-LlIHASkk~~~~~~i~a~e~fyr~il~~~G~~~~~~P~~~P~GaIIG   91 (304)
                      +||+.=+|..|+-|.|++|-|.|..  ..+|. ++|.+++                                 |.++|||
T Consensus         1 mSIkPk~a~~Ifdg~K~velrR~~p~~~~~~~~~~VY~Ts---------------------------------P~~aVvG   47 (124)
T COG4933           1 MSIKPKFAEAIFDGVKKVELRRITPVPIVEESTVIVYATS---------------------------------PVKAVVG   47 (124)
T ss_pred             CccchhhHHHHhcCcceEEEEEecCCCcccCcEEEEEecC---------------------------------chhheEE
Confidence            5889999999999999999999974  45775 5555543                                 3467899


Q ss_pred             EEEEeceeecccccccccccc--------cc--cccc-CcceEEeccCCeeccccee
Q 036173           92 CVEVVGCVRCEELASWEVVPE--------GV--RLEA-QTDFCWLCENPQKLLVPFE  137 (304)
Q Consensus        92 vVdLVDCl~~ee~s~W~~~pe--------g~--~Le~-~g~YaWvL~Npr~L~~PIP  137 (304)
                      .+++..+....--+-|.....        ++  .+++ +.-|+-.+.+|+....|++
T Consensus        48 ef~~e~V~~~~~~siw~~~~~~~~i~~~~e~~~Y~~G~k~A~ai~~~~p~~y~~P~~  104 (124)
T COG4933          48 EFTAERVEQVAIESIWRKAGKSGSIKIGAEYLEYFEGAKEAHAIEVSKPRRYTRPVT  104 (124)
T ss_pred             EEEeeeEEEcchHHHHHHhcccccccchHHHHHHHhccceeEEEEeCCceecCCCcC
Confidence            988877665432233432110        00  0122 3558999999999999886

>cd06541 ASCH ASC-1 homology or ASCH domain, a small beta-barrel domain found in all three kingdoms of life

Probab=84.94  E-value=1  Score=36.66  Aligned_cols=34  Identities=32%  Similarity=0.410  Sum_probs=27.6

Q ss_pred             eeecchHHHHHHhcceeeeeccCC----CCCCccEEEE
Q 036173           15 LTMHQPWASLLVYGIKRVEGRSWP----APLRGRLWIH   48 (304)
Q Consensus        15 LSIrQPWAsLIv~G~K~IEnRSW~----T~yRGpLlIH   48 (304)
                      |.++.+++.||+.|.|++|.|...    ....|..+|-
T Consensus         2 l~~~~~~~~lI~~G~Ktat~r~~~~~~~~~k~Gd~~i~   39 (105)
T cd06541           2 LMFGDRYGQLVVSGRKTIEIRSLDIYEQLPKAGDYLII   39 (105)
T ss_pred             ceechHHHHHHHCCCCEEEEEcchhcccCCCCCCEEEE
Confidence            788999999999999999999863    3456875553

ASCH resembles the RNA-binding PUA domain and may also interact with RNA. ASCH has been proposed to function as an RNA-binding domain during coactivation, RNA-processing and the regulation of prokaryotic translation. The domain has been named after the ASC-1 protein, the activating signal cointegrator 1 or thyroid hormone receptor interactor protein 4 (TRIP4). ASC-1 is conserved in many eukaryotes and has been suggested to participate in a protein complex that interacts with RNA. It has been shown that ASC-1 mediates the interaction between various transciption factors and the basal transcriptional machinery.

>cd06552 ASCH_yqfb_like ASC-1 homology domain, subfamily similar to Escherichia coli Yqfb

Probab=83.00  E-value=4.2  Score=32.09  Aligned_cols=33  Identities=12%  Similarity=0.100  Sum_probs=25.4

Q ss_pred             eeecchHHHHHHhcceeeeeccCCC--CCCccEEE
Q 036173           15 LTMHQPWASLLVYGIKRVEGRSWPA--PLRGRLWI   47 (304)
Q Consensus        15 LSIrQPWAsLIv~G~K~IEnRSW~T--~yRGpLlI   47 (304)
                      |.+.+-++.+|+.|.|+++.|.|.-  ...|.+++
T Consensus         2 ~~f~~~~~~~I~sG~Kt~t~R~~~~~~~~~Gd~~~   36 (100)
T cd06552           2 ILFFERYEEAILSGKKTATIRDGGESHLKPGDVVE   36 (100)
T ss_pred             eechHHHHHHHHcCCCEEEEeCCCccCCCCCCEEE
Confidence            5677889999999999999999753  23565443

The ASCH domain, a small beta-barrel domain found in all three kingdoms of life, resembles the RNA-binding PUA domain and may also interact with RNA. ASCH has been proposed to function as an RNA-binding domain during coactivation, RNA-processing and the regulation of prokaryotic translation.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	304
2e5o_A	154	'solution Structure Of The Trip_4c Domain Of Target		1e-22

>pdb|2E5O|A Chain A, 'solution Structure Of The Trip_4c Domain Of Target Of Activating Signal Cointegrator 1 Length = 154

Iteration: 1
 Score =  103 bits (257), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 54/146 (36%), Positives = 82/146 (56%), Gaps = 7/146 (4%)
Query: 14  CLTMHQPWASLLVYGIKRVEGRSWPAPLRGRLWIHAASKIPEEATIKAMEEFYREIYAVN 73
           CL++HQPWASLLV GIKRVEGRSW  P RGRLWI A +K P    +  ++  YR +    
Sbjct: 9   CLSVHQPWASLLVRGIKRVEGRSWYTPHRGRLWIAATAKKPSPQEVSELQATYRLLRG-- 66
Query: 74  GITDLQFPQHYPVSXXXXXXXXXXXXXXXXXASWEVVPEGVRLEAQTDFCWLCENPQKLL 133
              D++FP  YP                      E  P+ +  E+ + F ++C+NPQ+++
Sbjct: 67  --KDVEFPNDYPSGCLLGCVDLIDCLSQKQFK--EQFPD-ISQESDSPFVFICKNPQEMV 121
Query: 134 VPFEMRGYQGVYNLEKKVYEAAVRGL 159
           V F ++G   ++ L+ K+++ A +GL
Sbjct: 122 VKFPIKGNPKIWKLDSKIHQGAKKGL 147

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	304
2e5o_A	154	Activating signal cointegrator 1; TRIP4_C domain,	1e-57
2dp9_A	124	Hypothetical protein TTHA0113; jellyroll, structur	6e-15

>2e5o_A Activating signal cointegrator 1; TRIP4_C domain, ASC- 1, thyroid receptor-interacting protein 4, TRIP-4, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 154

 Score =  181 bits (460), Expect = 1e-57
 Identities = 58/150 (38%), Positives = 91/150 (60%), Gaps = 7/150 (4%)

Query: 14  CLTMHQPWASLLVYGIKRVEGRSWPAPLRGRLWIHAASKIPEEATIKAMEEFYREIYAVN 73
           CL++HQPWASLLV GIKRVEGRSW  P RGRLWI A +K P    +  ++  YR +    
Sbjct: 9   CLSVHQPWASLLVRGIKRVEGRSWYTPHRGRLWIAATAKKPSPQEVSELQATYRLLRGK- 67

Query: 74  GITDLQFPQHYPVSRLLGCVEVVGCVRCEELASWEVVPEGVRLEAQTDFCWLCENPQKLL 133
              D++FP  YP   LLGCV+++ C+  ++          +  E+ + F ++C+NPQ+++
Sbjct: 68  ---DVEFPNDYPSGCLLGCVDLIDCLSQKQFKEQ---FPDISQESDSPFVFICKNPQEMV 121

Query: 134 VPFEMRGYQGVYNLEKKVYEAAVRGLTPVK 163
           V F ++G   ++ L+ K+++ A +GL    
Sbjct: 122 VKFPIKGNPKIWKLDSKIHQGAKKGLMKQN 151

>2dp9_A Hypothetical protein TTHA0113; jellyroll, structural genomics, NPPSFA, national project on structural and functional analyses; 1.90A {Thermus thermophilus} SCOP: b.122.1.5 PDB: 1wk2_A Length = 124

 Score = 69.4 bits (169), Expect = 6e-15
 Identities = 23/131 (17%), Positives = 43/131 (32%), Gaps = 27/131 (20%)

Query: 14  CLTMHQPWASLLVYGIKRVEGRSWPAPLRGRLWIHAASKIPEEATIKAMEEFYREIYAVN 73
            L + +P+ASL+V G K  E R      RG L I +  ++  +A +  +E          
Sbjct: 10  GLIVREPYASLIVDGRKVWEIRRRKTRHRGPLGIVSGGRLIGQADLVGVEGP-------- 61

Query: 74  GITDLQFPQHYPVSRLLGCVEVVGCVRCEELASWEVVPEGVRLEAQTDFCWLCENPQKLL 133
             +  +   H                    L ++         + +  + W+ EN  +  
Sbjct: 62  -FSVEELLAHQEKH----------LAEEAFLRAY--------AKDEPLYAWVLENAFRYE 102

Query: 134 VPFEMRGYQGV 144
            P  +    G 
Sbjct: 103 KPLHVPRRPGR 113

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	304
2e5o_A	154	Activating signal cointegrator 1; TRIP4_C domain,	100.0
2dp9_A	124	Hypothetical protein TTHA0113; jellyroll, structur	99.93
2kku_A	161	Uncharacterized protein; alpha/beta protein, struc	88.31

>2e5o_A Activating signal cointegrator 1; TRIP4_C domain, ASC- 1, thyroid receptor-interacting protein 4, TRIP-4, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=100.00  E-value=1.6e-45  Score=318.07  Aligned_cols=149  Identities=40%  Similarity=0.854  Sum_probs=128.5

Q ss_pred             CcccceeeecchHHHHHHhcceeeeeccCCCCCCccEEEEeccCCChHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCcce
Q 036173            9 NYTNPCLTMHQPWASLLVYGIKRVEGRSWPAPLRGRLWIHAASKIPEEATIKAMEEFYREIYAVNGITDLQFPQHYPVSR   88 (304)
Q Consensus         9 ~~~mKALSIrQPWAsLIv~G~K~IEnRSW~T~yRGpLlIHASkk~~~~~~i~a~e~fyr~il~~~G~~~~~~P~~~P~Ga   88 (304)
                      ..+.+|||||||||+||++|+|+||||+|+|+|||+|||||++|.++.+.+.++++||+.++..    ++.+|++||+|+
T Consensus         4 ~~~~~aLSirQPwAslIv~G~K~iE~R~W~T~~RG~l~IhAa~k~~~~~~i~~~e~~~r~~~~~----~~~~p~~~p~G~   79 (154)
T 2e5o_A            4 GSSGWCLSVHQPWASLLVRGIKRVEGRSWYTPHRGRLWIAATAKKPSPQEVSELQATYRLLRGK----DVEFPNDYPSGC   79 (154)
T ss_dssp             CCCCEEEEECTTHHHHHHHTSCCEEEESSCCCCCEEEEEEECSSCCCHHHHHHHHHHHHHHHCT----TCCCCSCCCSSE
T ss_pred             CCCCcEEEEeCcHHHHHHcCCceeeccCCcCCCCceEEEEEcCCCCCHHHHHHHHHHHHhhccc----ccCCcccCCCce
Confidence            3567899999999999999999999999999999999999998888888889999999876532    367899999999


Q ss_pred             EEEEEEEeceeeccccccccccccccccccCcceEEeccCCeecccceeccCcCCCccCCHHHHHHHHhcccCCCC
Q 036173           89 LLGCVEVVGCVRCEELASWEVVPEGVRLEAQTDFCWLCENPQKLLVPFEMRGYQGVYNLEKKVYEAAVRGLTPVKG  164 (304)
Q Consensus        89 IIGvVdLVDCl~~ee~s~W~~~peg~~Le~~g~YaWvL~Npr~L~~PIPvkG~lGIw~vd~~l~~aa~~gL~~v~~  164 (304)
                      |||+|+|+||+..+++..  ..+. ...+.++.|+|+|+||++|++|||++|++|||+|+++++++|++||+++..
T Consensus        80 ilG~v~lvdc~~~ee~~~--~~~~-~~~~~~~~y~wvl~n~~~L~~PiP~kG~~~i~~v~~~~~~~~~~~l~~~~~  152 (154)
T 2e5o_A           80 LLGCVDLIDCLSQKQFKE--QFPD-ISQESDSPFVFICKNPQEMVVKFPIKGNPKIWKLDSKIHQGAKKGLMKQNK  152 (154)
T ss_dssp             EEEEEEEEEEEETTHHHH--HCTT-STTTCCSSEEEEEEEEEECSSCCBCCCCSSEEECCHHHHHHHHHGGGCCCS
T ss_pred             EEEEEEEEEEecHHHhhh--hccc-cCcccCCcEEEEeCCceEccCceeecCCcceEeCCHHHHHHHHHHhhhhhh
Confidence            999999999998766531  1110 111246889999999999999999999999999999999999999998753

>2dp9_A Hypothetical protein TTHA0113; jellyroll, structural genomics, NPPSFA, national project on structural and functional analyses; 1.90A {Thermus thermophilus} SCOP: b.122.1.5 PDB: 1wk2_A

Probab=99.93  E-value=1.4e-26  Score=192.97  Aligned_cols=100  Identities=28%  Similarity=0.376  Sum_probs=80.8

Q ss_pred             ccc-eeeecchHHHHHHhcceeeeeccCCCCCCccEEEEeccCCChHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCcceE
Q 036173           11 TNP-CLTMHQPWASLLVYGIKRVEGRSWPAPLRGRLWIHAASKIPEEATIKAMEEFYREIYAVNGITDLQFPQHYPVSRL   89 (304)
Q Consensus        11 ~mK-ALSIrQPWAsLIv~G~K~IEnRSW~T~yRGpLlIHASkk~~~~~~i~a~e~fyr~il~~~G~~~~~~P~~~P~GaI   89 (304)
                      .|| ||||+||||++|++|.|++|+|+|+|+|||+|+|||+                                    |+|
T Consensus         6 ~mk~~LSIkqpyA~lIl~G~K~~E~R~~~t~~rg~v~Ihat------------------------------------G~i   49 (124)
T 2dp9_A            6 RPKLGLIVREPYASLIVDGRKVWEIRRRKTRHRGPLGIVSG------------------------------------GRL   49 (124)
T ss_dssp             CCSCEEECCTTHHHHHHTTCCCEEEESSCCCCCEEEEEEET------------------------------------TEE
T ss_pred             ccccEEEEecHHHHHHHCCCceEEeeCCCCCCCCEEEEEEC------------------------------------CCE
Confidence            578 9999999999999999999999999999999999972                                    689


Q ss_pred             EEEEEEecee-e--ccccccccc-----cccccc--c-ccCcceEEeccCCeecccceeccCcCCCccCC
Q 036173           90 LGCVEVVGCV-R--CEELASWEV-----VPEGVR--L-EAQTDFCWLCENPQKLLVPFEMRGYQGVYNLE  148 (304)
Q Consensus        90 IGvVdLVDCl-~--~ee~s~W~~-----~peg~~--L-e~~g~YaWvL~Npr~L~~PIPvkG~lGIw~vd  148 (304)
                      ||+|+|+||+ .  .+++  |..     .++.+.  + .+...|+|+|+||++|+.|||++|++|.|.|-
T Consensus        50 vG~~~i~d~~g~~~~eel--~~~~~~~~~~~~~~~~y~~g~~~ya~~l~~~~~l~~Pi~~~g~~g~~~w~  117 (124)
T 2dp9_A           50 IGQADLVGVEGPFSVEEL--LAHQEKHLAEEAFLRAYAKDEPLYAWVLENAFRYEKPLHVPRRPGRVMFV  117 (124)
T ss_dssp             EEEEEEEEEEEEECHHHH--GGGHHHHCCCHHHHHHHHTTSCEEEEEEEEEEEEEEEEECCCTTTCCCCC
T ss_pred             EEEEEEEEEecCCCHHHH--HHHhhhcCCCHHHhhhhhcCCceEEEEECCcEEcCCCcccccCCCcEEEE
Confidence            9999999999 3  2221  221     111000  1 23457999999999999999999999988775

>2kku_A Uncharacterized protein; alpha/beta protein, structural genomics, PSI-2, protein STRU initiative; NMR {Archaeoglobus fulgidus}

Probab=88.31  E-value=0.47  Score=41.34  Aligned_cols=95  Identities=12%  Similarity=0.112  Sum_probs=64.6

Q ss_pred             cccceeeecchHHHHHH-hcceeeeec--cCCCCCCcc-EEEEeccCCChHHHHHHHHHHHHHHHHhcCCCCCCCCCCCC
Q 036173           10 YTNPCLTMHQPWASLLV-YGIKRVEGR--SWPAPLRGR-LWIHAASKIPEEATIKAMEEFYREIYAVNGITDLQFPQHYP   85 (304)
Q Consensus        10 ~~mKALSIrQPWAsLIv-~G~K~IEnR--SW~T~yRGp-LlIHASkk~~~~~~i~a~e~fyr~il~~~G~~~~~~P~~~P   85 (304)
                      +..--|||.-=+|..|+ .|.|++=-|  .|+---.|. |+|.||.                                 |
T Consensus        26 i~~VllSIkpey~~rIf~~GkK~flrr~~v~~~l~~Gd~vviYaS~---------------------------------P   72 (161)
T 2kku_A           26 IVGVTYPIPKRFMDRFFKKGKDVFVKPATVWKELKPGMKFVFYQSH---------------------------------E   72 (161)
T ss_dssp             CEEEEECCSSSTTHHHHHHSCEEEEESSCSCTTCCTTEEEEECCCS---------------------------------T
T ss_pred             eEEEEEecCHHHHHHHHhcCceEEEeccCcccccCCCCEEEEEEcC---------------------------------C
Confidence            34557899999999999 999999333  355556785 7776654                                 3


Q ss_pred             cceEEEEEEEeceee-ccccccccccccccccc---------c-------------CcceEEeccCCeeccccee
Q 036173           86 VSRLLGCVEVVGCVR-CEELASWEVVPEGVRLE---------A-------------QTDFCWLCENPQKLLVPFE  137 (304)
Q Consensus        86 ~GaIIGvVdLVDCl~-~ee~s~W~~~peg~~Le---------~-------------~g~YaWvL~Npr~L~~PIP  137 (304)
                      .+.++|.++|.+++. .+--.-|....+...|.         +             ...|+-.|+|++++..|+.
T Consensus        73 ~~~iVGea~I~~Ii~~~~P~~lWe~~~d~~gITkeef~~Yy~g~~~w~~~~~~~~~~~~~aI~L~~Vrky~~pvk  147 (161)
T 2kku_A           73 DTGFVGEARIKRVVLSENPMQFFETFGDRVFLTKDELKEYMKSQERWGRRRESKKKKLWMAIELEDVKKYDKPIK  147 (161)
T ss_dssp             TCBCCEEEEEEEEEEESCTHHHHHHTSTTBSSCHHHHHHHHHHHHHTSSCCCCSSCCCEEEEEEEEEEECCSCBC
T ss_pred             CcEEEEEEEEEEEEecCCHHHHHHHhCcccCcCHHHHHHHhcccccccccccccccccEEEEEecceEeCCCCCC
Confidence            467999999999987 32223454332222111         0             1169999999999988764

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	304
d2dp9a1	120	b.122.1.5 (A:1-120) Hypothetical protein TTHA0113	1e-32

>d2dp9a1 b.122.1.5 (A:1-120) Hypothetical protein TTHA0113 {Thermus thermophilus [TaxId: 274]} Length = 120

class: All beta proteins
fold: PUA domain-like
superfamily: PUA domain-like
family: Hypothetical protein TTHA0113
domain: Hypothetical protein TTHA0113
species: Thermus thermophilus [TaxId: 274]

 Score =  114 bits (287), Expect = 1e-32
 Identities = 23/133 (17%), Positives = 41/133 (30%), Gaps = 27/133 (20%)

Query: 14  CLTMHQPWASLLVYGIKRVEGRSWPAPLRGRLWIHAASKIPEEATIKAMEEFYREIYAVN 73
            L + +P+ASL+V G K  E R      RG L I +  ++  +A +  +E  +       
Sbjct: 7   GLIVREPYASLIVDGRKVWEIRRRKTRHRGPLGIVSGGRLIGQADLVGVEGPFSVE---- 62

Query: 74  GITDLQFPQHYPVSRLLGCVEVVGCVRCEELASWEVVPEGVRLEAQTDFCWLCENPQKLL 133
                   +H      L                          + +  + W+ EN  +  
Sbjct: 63  -ELLAHQEKHLAEEAFLRA----------------------YAKDEPLYAWVLENAFRYE 99

Query: 134 VPFEMRGYQGVYN 146
            P  +    G   
Sbjct: 100 KPLHVPRRPGRVM 112

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	304
d2dp9a1	120	Hypothetical protein TTHA0113 {Thermus thermophilu	99.96
d1xnea_	113	Hypothetical protein PF0470 {Pyrococcus furiosus [	80.23

>d2dp9a1 b.122.1.5 (A:1-120) Hypothetical protein TTHA0113 {Thermus thermophilus [TaxId: 274]}

class: All beta proteins
fold: PUA domain-like
superfamily: PUA domain-like
family: Hypothetical protein TTHA0113
domain: Hypothetical protein TTHA0113
species: Thermus thermophilus [TaxId: 274]

Probab=99.96  E-value=4.1e-30  Score=211.85  Aligned_cols=103  Identities=24%  Similarity=0.312  Sum_probs=81.3

Q ss_pred             cccceeeecchHHHHHHhcceeeeeccCCCCCCccEEEEeccCCChHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCcceE
Q 036173           10 YTNPCLTMHQPWASLLVYGIKRVEGRSWPAPLRGRLWIHAASKIPEEATIKAMEEFYREIYAVNGITDLQFPQHYPVSRL   89 (304)
Q Consensus        10 ~~mKALSIrQPWAsLIv~G~K~IEnRSW~T~yRGpLlIHASkk~~~~~~i~a~e~fyr~il~~~G~~~~~~P~~~P~GaI   89 (304)
                      .++.|||||||||+||++|.|+||+|+|+|+|||+|+|||++                                    .+
T Consensus         3 ~~~~~Lsi~QPwA~lI~~G~K~iE~R~w~t~~RG~l~Iha~~------------------------------------k~   46 (120)
T d2dp9a1           3 RPKLGLIVREPYASLIVDGRKVWEIRRRKTRHRGPLGIVSGG------------------------------------RL   46 (120)
T ss_dssp             CCSCEEECCTTHHHHHHTTCCCEEEESSCCCCCEEEEEEETT------------------------------------EE
T ss_pred             CCcceeEEeCcHHHHHHcCCCeeeeccCCCCCCccEEEEEcc------------------------------------cC
Confidence            457899999999999999999999999999999999999875                                    36


Q ss_pred             EEEEEEeceeeccccccccc-----cc-ccc---ccccCcceEEeccCCeecccceeccCcCCCccCC
Q 036173           90 LGCVEVVGCVRCEELASWEV-----VP-EGV---RLEAQTDFCWLCENPQKLLVPFEMRGYQGVYNLE  148 (304)
Q Consensus        90 IGvVdLVDCl~~ee~s~W~~-----~p-eg~---~Le~~g~YaWvL~Npr~L~~PIPvkG~lGIw~vd  148 (304)
                      +|.++++||+..-....+..     .+ +++   ..++++.|+|+|+||++|+.|||++|+||.|.|-
T Consensus        47 ~~~~~l~d~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~y~wvl~np~~l~~PiP~kG~~G~~~W~  114 (120)
T d2dp9a1          47 IGQADLVGVEGPFSVEELLAHQEKHLAEEAFLRAYAKDEPLYAWVLENAFRYEKPLHVPRRPGRVMFV  114 (120)
T ss_dssp             EEEEEEEEEEEEECHHHHGGGHHHHCCCHHHHHHHHTTSCEEEEEEEEEEEEEEEEECCCTTTCCCCC
T ss_pred             CCchhHHHHhcccchhhhhhccccccCchhhhcccccCCCcEEEEeCCcEECCcCEEeecCCCcEEEE
Confidence            88899999976311110100     11 111   1234678999999999999999999999999874

>d1xnea_ b.122.1.6 (A:) Hypothetical protein PF0470 {Pyrococcus furiosus [TaxId: 2261]}

class: All beta proteins
fold: PUA domain-like
superfamily: PUA domain-like
family: ProFAR isomerase associated domain
domain: Hypothetical protein PF0470
species: Pyrococcus furiosus [TaxId: 2261]

Probab=80.23  E-value=0.5  Score=36.83  Aligned_cols=32  Identities=22%  Similarity=0.233  Sum_probs=27.1

Q ss_pred             ccceeeecchHHHHHHhcceeeeeccCCCCCC
Q 036173           11 TNPCLTMHQPWASLLVYGIKRVEGRSWPAPLR   42 (304)
Q Consensus        11 ~mKALSIrQPWAsLIv~G~K~IEnRSW~T~yR   42 (304)
                      +.--+-+..||=.+|..|.|+||.|-...+++
T Consensus         2 ~~~~m~l~~~~f~~Ik~G~K~iE~Rl~d~kr~   33 (113)
T d1xnea_           2 KVYRLYLKDEYLEMVKSGKKRIEVRVAYPQLK   33 (113)
T ss_dssp             CEEEECCCHHHHHHHHHTCCCEEECCCTTTTT
T ss_pred             ceEEEecCchhHHHHHcCCCEEEEEccchhHh
Confidence            34456788999999999999999999887764