Citrus Sinensis ID: 036175

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-
Protein Sequence
MVKAHESWIYRQHSAWQLPDLNCMRTSLDPRQPECLPSLIAPENYMFSANAALPGYVSPGFANLKTEQINGAHKALQILPPRFQNLVASPYPYLNEIQPAFPCGFSEQAAPNEKLGSLQKGLLVFDQSGNQTQLVYSSVCPSVLNTPATLKKEVSVNGFLQDKAIKRDQFTSVKPLLHEEFDENHISGKECEMHEDTEEINALLYSDGDDDYSNGDDSEDDEVKSTDHSPVAIEGKYEKHDLTLEISEEVASSDGPNKRQKLLNGGYNKSSQTDTACSVQLEGSHECDNDAESGYANGQTQKEEIDFILGNMQSRKDKIHTALRILQGIIPGANGKDPLSLLDEAIDYLQSLKLKAVALGV
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHcccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEcccccEEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHcccHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHccccccccccHcccccccccccccccccccccccccEEEEEEcccccEEEEEEcccccccccccccccccccccccccccccHcccccccccccccccccccccccccccccHHHHHHHHccccccccccccccccccEccccccccccccccccccccccccHHHcccccccHHHHEccccccccccccccccccccccccccccccHccccccccccccccccccHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHccc
Coil and Loop (DISEMBL)
mvkaheswiyrqhsawqlpdlncmrtsldprqpeclpsliapenymfsanaalpgyvspgfanlkteQINGAHKALqilpprfqnlvaspypylneiqpafpcgfseqaapneklgsLQKGLLVfdqsgnqtqLVYSsvcpsvlntpatlKKEVSVngflqdkaikrdqftsvkpllheefdenhisgkecemheDTEEINALLysdgdddysngddseddevkstdhspvaiegkyekhdltLEISEevassdgpnkrqkllnggynkssqtdtacsvqlegshecdndaesgyangqtQKEEIDFILGNMQSRKDKIHTALRILQgiipgangkdplsLLDEAIDYLQSLKLKAVALGV
Flexible Loop (DISEMBL)
mvkaheswiyrqhsawqlpDLNCMRTSLDPRQPECLPSLIAPENYMFSANAALPGYVSPGFANLKTEQINGAHKALQILPPRFQNLVASPYPYLNEIQPAFPCGFSEQAAPNEKLGSLQKGLLVFDQSGNQTQLVYSSVCPSVLNTPATLKKEVSVngflqdkaikrdqftsvkplLHEEFDENHISGKECEMHEDTEEINALLYSDGDDDYsngddseddevkstdhspvaiegkyekhdLTLEISEevassdgpnkRQKLLNGGYNKSSQTDTACSVQLEGSHECDNDAESGYANGQTQKEEIDFILGNMQSRKDKIHTALRILQGIIPGANGKDPLSLLDEAIDYLQSLKLKAVALGV
Low Complexity Region (SEG)
MVKAHESWIYRQHSAWQLPDLNCMRTSLDPRQPECLPSLIAPENYMFSANAALPGYVSPGFANLKTEQINGAHKALQILPPRFQNLVASPYPYLNEIQPAFPCGFSEQAAPNEKLGSLQKGLLVFDQSGNQTQLVYSSVCPSVLNTPATLKKEVSVNGFLQDKAIKRDQFTSVKPLLHEEFDENHISGKECEMHEDTEEINALLysdgdddysngddseddeVKSTDHSPVAIEGKYEKHDLTLEISEEVASSDGPNKRQKLLNGGYNKSSQTDTACSVQLEGSHECDNDAESGYANGQTQKEEIDFILGNMQSRKDKIHTALRILQGIIPGANGKDPLSLLDEAIDYLQSLKLKAVALGV
Disordered region (IsUnstruct)
******SWIYRQHSAWQLPDLNCMRTSLDPRQPECLPSLIAPENYMFSANAALPGYVSPGFANLKTEQINGAHKALQILPPRFQNLVASPYPYLNEIQPAFPCGFSEQ******LGSLQKGLLVFDQSGNQTQLVYSSVCPSVLNTPATLKKEVSVNGFLQDKAIKRDQFTSVKPLL*******************************************************************************************************************************IDFILGNMQSRKDKIHTALRILQGIIPGANGKDPLSLLDEAIDYLQSLKLKAV****
Disordered Region (DISOPRED)
******S*IYRQHSAWQLPDL***************PSLIAPENYMFSANAALPGYVS*GFANLKTEQINGAHKALQILPP**********************************GSLQKGLLVFDQSGNQTQLVYSSVCPSVL*********************************************************************************************************************************************************************************ALRILQGIIPGANGKDPLSLLDEAIDYLQSLKLKAVALG*
Disordered Region (DISEMBL)
MVKAHESWIYRQHSAWQLPDLNCMRTSLDPRQPECLPSLIAPENYMFSANAALPGYVSPGFANLKTEQINGAHKALQILPPRFQNLVASPYPYLNEIQPAFPCGFSEQAAPNEKLGSLQKGLLVFDQSGNQTQLVYSSVCPSVLNTPATLKKEVSVNGFLQDKAIKRDQFTSVKPLLHEEFDENHISGKECEMHEDTEEINALLYSDGDDD****************HSPVAIEGKYEKHDLTLEISE********NKRQKLLNGGYNKSSQTDTACSVQLEGSHECDNDAESGYANGQTQKEEIDFILGNMQSRKDKIHTALRILQGIIPGANGKDPLSLLDEAIDYLQSLKLKAVALGV
Disordered Region (DISPRO)
*******WIYRQHSAWQLPDLNCMRTSLDPRQPECLPSLIAPENYMFSANAALPGYVSPGFANLKTEQINGAHKALQILPPRFQNLVASPYPYLNEIQPAFPCGFSEQAAPNEKLGSLQKGLLVFDQSGNQTQLVYSSVCPSVLNTPATLKKEVSVNGFLQDKAIKRDQFTSVKPLLHEE************MHEDTEEINALLYSDG**************V********************************************NKS*Q*D**************************************QSRKDKIHTALRILQGIIPGANGKDPLSLLDEAIDYLQSLKLKAV*LG*
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MVKAHESWIYRQHSAWQLPDLNCMRTSLDPRQPECLPSLIAPENYMFSANAALPGYVSPGFANLKTEQINGAHKALQILPPRFQNLVASPYPYLNEIQPAFPCGFSEQAAPNEKLGSLQKGLLVFDQSGNQTQLVYSSVCPSVLNTPATLKKEVSVNGFLQDKAIKRDQFTSVKPLLHEEFDENHISGKECEMHEDTEEINALLYSDGDDDYSNGDDSEDDEVKSTDHSPVAIEGKYEKHDLTLEISEEVASSDGPNKRQKLLNGGYNKSSQTDTACSVQLEGSHECDNDAESGYANGQTQKEEIDFILGNMQSRKDKIHTALRILQGIIPGANGKDPLSLLDEAIDYLQSLKLKAVALGV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	361	2.2.26 [Sep-21-2011]
Q9FY69	326	Transcription factor bHLH	yes	no	0.847	0.938	0.389	5e-31
Q9FMF4	348	Transcription factor SAC5	no	no	0.842	0.873	0.375	3e-29
Q9FGB0	311	Transcription factor bHLH	no	no	0.709	0.823	0.285	1e-15
Q9FHA2	210	Transcription factor ALC	no	no	0.193	0.333	0.375	3e-05
O80536	524	Transcription factor PIF3	no	no	0.135	0.093	0.428	0.0001
Q8GZM7	478	Transcription factor PIF1	no	no	0.119	0.089	0.441	0.0004

>sp|Q9FY69|BH143_ARATH Transcription factor bHLH143 OS=Arabidopsis thaliana GN=BHLH143 PE=2 SV=1

 Score =  135 bits (340), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 129/331 (38%), Positives = 179/331 (54%), Gaps = 25/331 (7%)

Query: 28  LDPRQPECLPSLIAPENYMFSANAALPGYVSPGFANLKTEQINGAHKALQILPPRFQNLV 87
           LD +Q + LP  + P+  +         Y  PG    +  ++  A    + L P FQ L+
Sbjct: 3   LDTKQQKWLPLGLNPQACVQDKATE---YFRPGIPFPELGKVYAAEHQFRYLQPPFQALL 59

Query: 88  ASPYPYLNEIQPAFPCGFSEQ-AAPNEKLGSLQKGLLVFDQSGNQTQLVYSSVCPSVLNT 146
           +         Q +   G S   AAP   L S +K  +VFDQSG QT+L+    C   L  
Sbjct: 60  SRYDQQSCGKQVSCLNGRSSNGAAPEGALKSSRKRFIVFDQSGEQTRLLQ---CGFPLRF 116

Query: 147 PATLKKEV-SVNGFLQ-DKAIKRDQFTSVKPLLHEEFDENHISGKE-CEMHEDTEEINAL 203
           P+++  E  ++ G L  +K   +D     K L HE    +H +G+E  EMHEDTEEINAL
Sbjct: 117 PSSMDAERGNILGALHPEKGFSKDHAIQEKILQHE----DHENGEEDSEMHEDTEEINAL 172

Query: 204 LYSDGDDDYSNGDDSEDDEVKSTDHSPVAIEGKYEKHDLTLEISEEVASSDGPN-KRQKL 262
           LYSD DD+        DDEV ST HSP  +E +   +  T E+ E  ++ DGP  KRQKL
Sbjct: 173 LYSDDDDNDDW---ESDDEVMSTGHSPFTVE-QQACNITTEELDETESTVDGPLLKRQKL 228

Query: 263 LNGGYNKSSQTDTACSVQLEGSHECDNDAESGYANGQTQKEEIDFILGNMQSRKDKIHTA 322
           L+  Y  SS +    + +++G  + +N  ES  ++    K+E    L + QSRKDKIHTA
Sbjct: 229 LDHSYRDSSPS-LVGTTKVKGLSD-ENLPESNISS----KQETGSGLSDEQSRKDKIHTA 282

Query: 323 LRILQGIIPGANGKDPLSLLDEAIDYLQSLK 353
           LRIL+ ++PGA GK+ L LLDEAIDYL+ LK
Sbjct: 283 LRILESVVPGAKGKEALLLLDEAIDYLKLLK 313

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FMF4|SAC51_ARATH Transcription factor SAC51 OS=Arabidopsis thaliana GN=SAC51 PE=2 SV=1

 Score =  129 bits (324), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 130/346 (37%), Positives = 171/346 (49%), Gaps = 42/346 (12%)

Query: 28  LDPRQPECLPSLIAPENYM--FSANAALPGYVSPGFANLKTEQINGAHKALQILPPRFQN 85
           LD RQ + LP  ++P+         + LP    P    L   ++    + LQ  PP FQ+
Sbjct: 3   LDKRQRD-LPLGLSPQACFKDIVGRSVLPRIPLPELGKLYAAKLQA--RCLQ--PPPFQS 57

Query: 86  LVAS------PYPYLNEIQPAFPCGFSEQAAPNEKLGSLQKGLLVFDQSGNQTQLVYSSV 139
           L+ S         +      ++    +    P   L S QK LL+FDQSG+QT+L+    
Sbjct: 58  LLCSHDKESYGKRFSRSDMRSWCAAATTTTTPLGALESSQKRLLIFDQSGDQTRLLQ--- 114

Query: 140 CPSVLNTPATLKKEVSVNGFLQDKAIKRDQFTSVKPLLHEEFDENHIS-GKECEMHEDTE 198
           CP  L  P+    E           +K  +   ++    E+ +E H S G E EMHEDTE
Sbjct: 115 CPFPLRFPSHAAAE----------PVKLSELQGIEKAFKEDGEEFHKSDGTESEMHEDTE 164

Query: 199 EINALLYSDGDDDYSNGDDSEDDEVKSTDHSPVAIEGKYEKHDLTLEISEEVASSDGPNK 258
           EINALLYSD D D        DDEV ST HSP   EG   K +L     EE+   DGP K
Sbjct: 165 EINALLYSDDDYDDDC---ESDDEVMSTGHSPYPNEGVCNKREL-----EEI---DGPCK 213

Query: 259 RQKLL---NGGYNKSSQTDTACSVQLEGSHECDNDAESGYANGQTQKEEIDFILGNMQSR 315
           RQKLL   N   + SS   T  S QL GS     D +   +   + KE+    L N QS+
Sbjct: 214 RQKLLDKVNNISDLSSLVGTESSTQLNGSSFL-KDKKLPESKTISTKEDTGSGLSNEQSK 272

Query: 316 KDKIHTALRILQGIIPGANGKDPLSLLDEAIDYLQSLKLKAVALGV 361
           KDKI TAL+IL+ ++PGA G + L LLDEAIDYL+ LK   ++  V
Sbjct: 273 KDKIRTALKILESVVPGAKGNEALLLLDEAIDYLKLLKRDLISTEV 318

Transcription factor. Involved in stem elongation, probably by regulating a subset of genes involved in this process.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FGB0|BH145_ARATH Transcription factor bHLH145 OS=Arabidopsis thaliana GN=BHLH145 PE=2 SV=1

 Score = 84.3 bits (207), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 91/319 (28%), Positives = 142/319 (44%), Gaps = 63/319 (19%)

Query: 46  MFSANAA--LPGYVSPGFANLKTEQINGA-HKALQILPPRFQNLVASPYPYLNEIQPAFP 102
           MFS   +  +   VS  + +     ++G+ H   Q LPP+ Q +   P      I  A  
Sbjct: 43  MFSTRGSYQVSTQVSQSYFDGYCGWVHGSSHLQQQFLPPQNQCMKQVPLQVDGVISKA-- 100

Query: 103 CGFSEQAAPNEKLGSLQKGLLVFDQSGNQTQLVYSSVCPSVLNTPATLKKEVSVNGFLQD 162
               EQ +        QK  LVFDQSG+QT L+ +S    +  +  TLK+    +   + 
Sbjct: 101 ---EEQCS--------QKRFLVFDQSGDQTTLLLAS---DIRKSFETLKQHACPDMKEEL 146

Query: 163 KAIKRDQFTSVKPLLHEEFDENHISGKECEMHEDTEEINALLYSDGDDDYSNGDDSEDDE 222
           +   +D F                   E ++ ED+EE+NALLYS+ +  Y     SE+DE
Sbjct: 147 QRSNKDLFVC----------HGMQGNSEPDLKEDSEELNALLYSEDESGYC----SEEDE 192

Query: 223 VKSTDHSP-VAIEGKYEKHDLTLEISEEVASSDGPNKRQKLLNGGYNKSSQTDTACSVQL 281
           V S DHSP + + G+ +                     QK   G Y +    +      L
Sbjct: 193 VTSADHSPSIVVSGRED---------------------QKTFLGSYGQP--LNAKKRKIL 229

Query: 282 EGSHECDNDAESGYANGQTQKEEIDFI----LGNMQSRKDKIHTALRILQGIIPGANGKD 337
           E S+E   DAES  + G      I F+    L + +  ++KI   + +L+ ++PG    D
Sbjct: 230 ETSNESMRDAES--SCGSCDNTRISFLKRSKLSSNKIGEEKIFETVSLLRSVVPGEELVD 287

Query: 338 PLSLLDEAIDYLQSLKLKA 356
           P+ ++D AIDYL+SLK++A
Sbjct: 288 PILVIDRAIDYLKSLKMEA 306

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FHA2|ALC_ARATH Transcription factor ALC OS=Arabidopsis thaliana GN=ALC PE=2 SV=1

 Score = 50.1 bits (118), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 27/72 (37%), Positives = 41/72 (56%), Gaps = 2/72 (2%)

Query: 292 ESGYANGQTQKEEIDFILGNM--QSRKDKIHTALRILQGIIPGANGKDPLSLLDEAIDYL 349
            SG     + K  ID    N+  + R+ KI+  ++ LQ +IP +N  D  S+LDEAI+YL
Sbjct: 80  RSGAKQRNSLKRNIDAQFHNLSEKKRRSKINEKMKALQKLIPNSNKTDKASMLDEAIEYL 139

Query: 350 QSLKLKAVALGV 361
           + L+L+   L V
Sbjct: 140 KQLQLQVQTLAV 151

Required for the dehiscence of fruit, especially for the separation of the valve cells from the replum. Promotes the differentiation of a strip of labile nonlignified cells sandwiched between layers of lignified cells.

Arabidopsis thaliana (taxid: 3702)

>sp|O80536|PIF3_ARATH Transcription factor PIF3 OS=Arabidopsis thaliana GN=PIF3 PE=1 SV=1

 Score = 48.1 bits (113), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 21/49 (42%), Positives = 34/49 (69%)

Query: 313 QSRKDKIHTALRILQGIIPGANGKDPLSLLDEAIDYLQSLKLKAVALGV 361
           + R+D+I+  +R LQ +IP  N  D  S+LDEAI+YL+SL+L+   + +
Sbjct: 353 RRRRDRINEKMRALQELIPNCNKVDKASMLDEAIEYLKSLQLQVQIMSM 401

Transcription factor acting positively in the phytochrome signaling pathway. Activates transcription by binding to the G box (5'-CACGTG-3').

Arabidopsis thaliana (taxid: 3702)

>sp|Q8GZM7|PIF1_ARATH Transcription factor PIF1 OS=Arabidopsis thaliana GN=PIF1 PE=1 SV=1

 Score = 46.2 bits (108), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 19/43 (44%), Positives = 32/43 (74%)

Query: 313 QSRKDKIHTALRILQGIIPGANGKDPLSLLDEAIDYLQSLKLK 355
           + R+D+I+  ++ LQ +IP  N  D  S+LDEAI+Y++SL+L+
Sbjct: 294 RKRRDRINERMKALQELIPRCNKSDKASMLDEAIEYMKSLQLQ 336

Transcription activator. Regulates negatively chlorophyll biosynthesis and seed germination in the dark, and lightinduced degradation of PIF1 relieves this negative regulation to promote photomorphogenesis. Binds to the G-box motif (5'-CACGTG-3') found in many light-regulated promoters. Promotes the expression of SOM, and thus modulates responses to abscisic acid (ABA) and gibberellic acid (GA).

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	361
224093318	330	predicted protein [Populus trichocarpa]	0.894	0.978	0.454	2e-71
255563232	394	transcription factor, putative [Ricinus	0.952	0.873	0.456	2e-66
147836191	402	hypothetical protein VITISV_039910 [Viti	0.966	0.868	0.412	1e-52
359492922	421	PREDICTED: LOW QUALITY PROTEIN: transcri	0.983	0.843	0.411	1e-52
449438759	354	PREDICTED: transcription factor bHLH143-	0.950	0.968	0.391	4e-51
449476429	354	PREDICTED: LOW QUALITY PROTEIN: transcri	0.950	0.968	0.391	9e-51
449525822	360	PREDICTED: transcription factor bHLH143-	0.939	0.941	0.373	6e-49
449438234	360	PREDICTED: transcription factor bHLH143-	0.939	0.941	0.373	7e-49
224140751	309	predicted protein [Populus trichocarpa]	0.847	0.990	0.387	8e-48
356557577	406	PREDICTED: transcription factor bHLH143-	0.897	0.798	0.381	2e-45

>gi|224093318|ref|XP_002309879.1| predicted protein [Populus trichocarpa] gi|222852782|gb|EEE90329.1| predicted protein [Populus trichocarpa]

 Score =  275 bits (703), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 166/365 (45%), Positives = 206/365 (56%), Gaps = 42/365 (11%)

Query: 1   MVKAHESWIYRQHSAWQLPDLNCMRTSLDPRQPECLPSLIAPENYMFSANAALPGYVSPG 60
           MVKA  SW++   S WQ P+ N M TSLDP Q +CLP+ + P  YM SAN ++PG   P 
Sbjct: 1   MVKAEGSWLFPPLSTWQSPNFNRMTTSLDPAQLQCLPACMNPGTYMTSANMSMPGLAVPS 60

Query: 61  FANLKTEQINGAHKALQILPPRFQNLVASPYPYLNEIQPAFPCGFSEQAAPNEKLGSLQK 120
             N +T+Q N  +     LPP FQN +    PY+ E    F  G      PN  +G  Q+
Sbjct: 61  IPNFETQQGNETYGLPPCLPPHFQNFLPGTNPYVKENLSVFSYGLGRGGVPNPIVGC-QR 119

Query: 121 GLLVFDQSGNQTQLVYSSVCPSVLNTPATLKKEVSVNGFLQDKAIKRDQFTSVKPLLHEE 180
              +FDQSGN+ +L+YSS   +V        K +      ++ A K DQ   +K  LHE 
Sbjct: 120 RFFIFDQSGNEKRLMYSSFGLTVPKPTTADAKPIPGYFNYKEYAAKMDQ---MKLKLHEV 176

Query: 181 FDENHISGKECEMHEDTEEINALLYSDGDDDYSNGDDSEDDEVKSTDHSPVAIEGKYEKH 240
            DENH SG+E EMHEDTEEINA                                G  E+ 
Sbjct: 177 SDENHFSGEETEMHEDTEEINA-------------------------------HGTQEQV 205

Query: 241 DLTLEISEEVASSDGPNKRQKLLNGGYNKSSQTDTACSVQLEGSHECDN----DAESGYA 296
           +   EI+EEV SSDGPNKRQKL++GGY KSS  DTA SV++E     DN    D  S YA
Sbjct: 206 E---EITEEVTSSDGPNKRQKLIDGGYKKSSPVDTASSVKVERFLGYDNGYDSDMGSSYA 262

Query: 297 NGQTQKEEIDFILGNMQSRKDKIHTALRILQGIIPGANGKDPLSLLDEAIDYLQSLKLKA 356
            GQTQKE +  ILG+ Q RKDKIH  L+IL+ IIPGA  K+PL +LDEAI+YL+SLKLKA
Sbjct: 263 IGQTQKEGMVSILGSKQFRKDKIHATLKILESIIPGAKNKEPLLVLDEAINYLKSLKLKA 322

Query: 357 VALGV 361
             LGV
Sbjct: 323 KTLGV 327

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255563232|ref|XP_002522619.1| transcription factor, putative [Ricinus communis] gi|223538095|gb|EEF39706.1| transcription factor, putative [Ricinus communis]

 Score =  259 bits (661), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 167/366 (45%), Positives = 217/366 (59%), Gaps = 22/366 (6%)

Query: 3   KAHESWIYRQHSAWQLPDLNCMRTSLDPRQPECLPSLIA---PENYMFSANAALPGYVSP 59
           +A+ SW++  H  W+L D NCM TS++P QP CLP+ ++   P N M      +P    P
Sbjct: 41  QANNSWLFPPHETWELSDFNCMSTSVEPVQPGCLPAFVSHGTPTNMM------MPRISVP 94

Query: 60  GFANLKTEQINGAHKALQILPPRFQNLVASPYPYLNEIQPAFPCGFSEQAAPNEKLGSLQ 119
            + +L+T+Q  GA    Q   P F  ++ +   Y  E  PAF  GFS ++A N  + + Q
Sbjct: 95  TYPSLRTQQSTGAQGLPQSKAPPFHQVLPAIDSYPKESLPAFNYGFSGESALN-AVPACQ 153

Query: 120 KGLLVFDQSGNQTQLVYSSVCPSVLNTPATLKKEVSVNGFL--QDKAIKRDQFTSVKPLL 177
           +  ++FDQSGN+T+L+YSS  P+    P       +   +L  ++ A K D    + P L
Sbjct: 154 RKFVIFDQSGNETRLIYSSFFPTGAK-PTIAASRPTAGSYLRSEEHAAKLDGINLIMPKL 212

Query: 178 HEEFDENHISGKECEMHEDTEEINALLYSDGDDDYSNGDDSEDDEVKSTDHSPVAIEGKY 237
            E  DEN+ SG+E EMHEDTEEI+ALLYSD      N DD +DDEV ST HSP  I   Y
Sbjct: 213 QEVSDENYFSGEESEMHEDTEEIDALLYSD-----DNDDDYDDDEVISTGHSPSLIR-NY 266

Query: 238 EKHDLTLEISEEVASSDGPNKRQKLLNGGYNKSSQTDTACSVQLEGSH--ECDNDAESGY 295
                  EI+EEV  SDG NKRQKLL+GGY +SS TDTA S ++  +H  +CD DAES  
Sbjct: 267 GMRGQVEEITEEVTDSDGQNKRQKLLDGGYKRSSLTDTAGSTKVAMAHGYDCD-DAESSC 325

Query: 296 ANGQTQKEEIDFILGNMQSRKDKIHTALRILQGIIPGANGKDPLSLLDEAIDYLQSLKLK 355
           A GQ  KE     LG  Q +KDKI   L+IL+ IIPG   KDPL +LD AIDYL+SLKL 
Sbjct: 326 AIGQNHKELRLANLGKEQLKKDKIRATLKILESIIPGVKDKDPLLVLDVAIDYLKSLKLS 385

Query: 356 AVALGV 361
           A  LGV
Sbjct: 386 AKTLGV 391

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147836191|emb|CAN73178.1| hypothetical protein VITISV_039910 [Vitis vinifera]

 Score =  213 bits (543), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 149/361 (41%), Positives = 196/361 (54%), Gaps = 12/361 (3%)

Query: 7   SWIYRQHSAWQLPDLNCMRT--SLDPRQPECLPSLIAPENYMFSANAALPGYVSPGFANL 64
           SW+  QH  W  PDLN +     L+  Q   + + + P   +   + +L  +      + 
Sbjct: 45  SWLPHQHPGWLSPDLNTLSAPLGLELEQQNIISAYMNPCPNLVPTSGSLTAHTFSVLPHS 104

Query: 65  KTEQINGAHKALQILPPRFQNLVASPYPYLNEIQPAFPCGFSEQA-APNEKLGSLQKGLL 123
           +  Q N  H     LP   Q    +    L E  PA P G S    APN      QK  L
Sbjct: 105 RPSQPNEPHGWFYCLPRFRQAFTHASNSILKEKLPAGPYGNSRVVNAPNVISECAQKRFL 164

Query: 124 VFDQSGNQTQLVYSSV--CPSVLNTPATLKKEVSVNGFLQDKAIKRDQFTSVKPLLHEEF 181
           VFDQSG+QT LV+SSV   P    T  + K   + N    ++  KRD      P+L +E 
Sbjct: 165 VFDQSGDQTTLVFSSVIGTPGQCLTSWSPKPSGAHNLSGGEEGTKRDLIYHQGPILTDES 224

Query: 182 DENHISGKECEMHEDTEEINALLYSDGDDDYSNGDDSEDDEVKSTDHSPVAIEGKYEKHD 241
           +EN  +  + EMHEDTEE+NALLYSD  D+YS    SEDDE  ST HSP  +   Y++ +
Sbjct: 225 NENGGTDVQSEMHEDTEELNALLYSD--DEYSY---SEDDEETSTGHSPSTMT-VYDRQE 278

Query: 242 LTLEISEEVASSDGPNKRQKLLNGGYNKSSQTDTACSVQLEGSHECDNDAESGYANGQT- 300
                +EEVASSDG NKR+KL NG +N  S  DTA S + + S E ++DAES  A+G   
Sbjct: 279 WLEGEAEEVASSDGSNKRRKLFNGDFNVPSLMDTASSAKPDNSLEYEDDAESSCADGNNP 338

Query: 301 QKEEIDFILGNMQSRKDKIHTALRILQGIIPGANGKDPLSLLDEAIDYLQSLKLKAVALG 360
           +  EI    GN +SRKD+I   + ILQ +IPG  GKD + +LDEAI YL+SLKLKA ALG
Sbjct: 339 EPGEIQSFSGNKRSRKDRIRETVNILQSLIPGGKGKDAIVVLDEAIHYLKSLKLKAKALG 398

Query: 361 V 361
           +
Sbjct: 399 L 399

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359492922|ref|XP_002285705.2| PREDICTED: LOW QUALITY PROTEIN: transcription factor bHLH145-like [Vitis vinifera]

 Score =  213 bits (542), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 151/367 (41%), Positives = 198/367 (53%), Gaps = 12/367 (3%)

Query: 1   MVKAHESWIYRQHSAWQLPDLNCMRT--SLDPRQPECLPSLIAPENYMFSANAALPGYVS 58
           M K   SW+  QH  W  PDLN +     L+  Q   + + + P   +   + +L  +  
Sbjct: 58  MEKDCGSWLPHQHPGWLSPDLNTLSAPLGLELEQQNIISAYMNPCPNLVPTSGSLTAHTF 117

Query: 59  PGFANLKTEQINGAHKALQILPPRFQNLVASPYPYLNEIQPAFPCGFSEQA-APNEKLGS 117
               + +  Q N  H     LP   Q    +    L E  PA P G S    APN     
Sbjct: 118 SVLPHSRPSQPNEPHGWFYCLPRFRQAFTHASNSILKEKLPAGPYGNSRVVNAPNVISEC 177

Query: 118 LQKGLLVFDQSGNQTQLVYSSV--CPSVLNTPATLKKEVSVNGFLQDKAIKRDQFTSVKP 175
            QK  LVFDQSG+QT LV+SSV   P    T  + K   + N    ++  KRD      P
Sbjct: 178 AQKRFLVFDQSGDQTTLVFSSVIGTPGQCLTSWSPKPSGAHNLSGGEEGTKRDLIYHQGP 237

Query: 176 LLHEEFDENHISGKECEMHEDTEEINALLYSDGDDDYSNGDDSEDDEVKSTDHSPVAIEG 235
           +L +E +EN  +  + EMHEDTEE+NALLYSD  D+YS    SEDDE  ST HSP  +  
Sbjct: 238 ILTDESNENGGTDVQSEMHEDTEELNALLYSD--DEYSY---SEDDEETSTGHSPSTMT- 291

Query: 236 KYEKHDLTLEISEEVASSDGPNKRQKLLNGGYNKSSQTDTACSVQLEGSHECDNDAESGY 295
            Y++ +     +EEVASSDG NKR+KL NG +N  S  DTA S + + S E ++DAES  
Sbjct: 292 VYDRQEWLEGEAEEVASSDGSNKRRKLFNGDFNVPSLMDTASSAKPDNSLEYEDDAESSC 351

Query: 296 ANGQT-QKEEIDFILGNMQSRKDKIHTALRILQGIIPGANGKDPLSLLDEAIDYLQSLKL 354
           A+G   +  EI    GN +SRKD+I   + ILQ +IPG  GKD + +LDEAI YL+SLKL
Sbjct: 352 ADGNNPEPGEIQSFSGNKRSRKDRIRETVNILQSLIPGGKGKDAIVVLDEAIHYLKSLKL 411

Query: 355 KAVALGV 361
           KA ALG+
Sbjct: 412 KAKALGL 418

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449438759|ref|XP_004137155.1| PREDICTED: transcription factor bHLH143-like [Cucumis sativus] gi|169219253|gb|ACA50447.1| putative transcription factor [Cucumis sativus]

 Score =  208 bits (529), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 145/370 (39%), Positives = 199/370 (53%), Gaps = 27/370 (7%)

Query: 1   MVKAHESWIYRQHSAWQLPDLNCMRTSLDPRQPECLPSLIAPENYMFS-ANAALPGYVSP 59
           MV    S +  +H AWQL + N M  S++ +Q E   + I  EN +FS     +  +  P
Sbjct: 1   MVGTDNSRLDFEHFAWQLHNYNSMNASIETKQQESCQTSINHENCIFSKCMGRMQRFAIP 60

Query: 60  GFANLKTEQINGAHKALQILPPRFQNLVASPYPYLNEIQP-----AFPCGFSEQAAPNEK 114
              + + EQ+N    +   L P FQN   +   Y NE +      A P G     + N  
Sbjct: 61  PLPSFEVEQLNVIQGSRHCLSPHFQNSRGTFISYQNEKESMHYAHAGPSGMPVSKSNN-- 118

Query: 115 LGSLQKGLLVFDQSGNQTQLVYSSVCPSVLNTPATLKKEVSVNGFLQDKAIKRDQFTSVK 174
            GS  KG L+FDQSGNQ +L+Y+ +CP    +  T  K     G+L++K   RD   SVK
Sbjct: 119 -GSYPKGFLIFDQSGNQKRLMYAPMCPVYFPSIVTENK---CCGWLEEKGAVRD-INSVK 173

Query: 175 PLLHEEFDENHIS-GKECEMHEDTEEINALLYSDGDDDYSNGDDSEDDEVKSTDHSPVAI 233
              +   +EN+++ G+  EMHE+TEEI+ALLYSD    Y     S DDEV ST HSP  I
Sbjct: 174 YSPNTLSNENYVADGESSEMHENTEEIDALLYSD----YDGTGCSSDDEVTSTGHSPEMI 229

Query: 234 EGKYEKHDLTLEISEEVASSDGPNKRQKLLNGGYNKSSQTDTACSVQLEGSHECDNDAES 293
               EK +   E + EVASSD P KRQ+L +GGY KS    T    ++E S    NDAES
Sbjct: 230 NEHCEKEEQCQETTTEVASSDVPRKRQRLHDGGYIKSLPIATGSCARVE-SQNYANDAES 288

Query: 294 GYANGQTQKEE----IDFILGNMQSRKDKIHTALRILQGIIPGANGKDPLSLLDEAIDYL 349
             + G   KEE    IDF       +KD+I   LR+L+ ++PGA GKDPL ++DEAI+Y 
Sbjct: 289 --SCGMVHKEEAGADIDFCY--CSCKKDRIEETLRVLESLVPGAKGKDPLLVIDEAINYF 344

Query: 350 QSLKLKAVAL 359
           + LK +++ L
Sbjct: 345 EVLKTRSLLL 354

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449476429|ref|XP_004154734.1| PREDICTED: LOW QUALITY PROTEIN: transcription factor bHLH143-like [Cucumis sativus]

 Score =  207 bits (526), Expect = 9e-51,   Method: Compositional matrix adjust.
 Identities = 145/370 (39%), Positives = 198/370 (53%), Gaps = 27/370 (7%)

Query: 1   MVKAHESWIYRQHSAWQLPDLNCMRTSLDPRQPECLPSLIAPENYMFS-ANAALPGYVSP 59
           MV    S +  +H AWQL + N M  S++ +Q E   + I  EN +FS     +  +  P
Sbjct: 1   MVGTDNSRLDFEHFAWQLHNYNSMNASIETKQQESCQTSINHENCIFSKCMGRMQRFAIP 60

Query: 60  GFANLKTEQINGAHKALQILPPRFQNLVASPYPYLNEIQP-----AFPCGFSEQAAPNEK 114
              + + EQ+N    +   L P FQN   +   Y NE +      A P G     + N  
Sbjct: 61  PLPSFEVEQLNVIQGSRHCLSPHFQNSRGTFISYQNEKESMHYAHAGPSGMPVSKSNN-- 118

Query: 115 LGSLQKGLLVFDQSGNQTQLVYSSVCPSVLNTPATLKKEVSVNGFLQDKAIKRDQFTSVK 174
            GS  KG L+FDQSGNQ +L+Y+ +CP    +  T  K     G+L++K   RD   SVK
Sbjct: 119 -GSYPKGFLIFDQSGNQKRLMYAPMCPVYFPSIVTENK---CCGWLEEKGAVRD-INSVK 173

Query: 175 PLLHEEFDENHIS-GKECEMHEDTEEINALLYSDGDDDYSNGDDSEDDEVKSTDHSPVAI 233
              +   +EN+++ G+  EMHE+TEEI+ALLYSD    Y     S DDEV ST HSP  I
Sbjct: 174 YSPNTLSNENYVADGESSEMHENTEEIDALLYSD----YDGTGCSSDDEVTSTGHSPEMI 229

Query: 234 EGKYEKHDLTLEISEEVASSDGPNKRQKLLNGGYNKSSQTDTACSVQLEGSHECDNDAES 293
               EK +   E + EVASSD P KRQ+L +GGY KS    T    ++E S    NDAES
Sbjct: 230 NEHCEKEEQCQETTTEVASSDVPRKRQRLHDGGYIKSLPIATGSCARVE-SQNYANDAES 288

Query: 294 GYANGQTQKEE----IDFILGNMQSRKDKIHTALRILQGIIPGANGKDPLSLLDEAIDYL 349
             + G   KEE    IDF        KD+I   LR+L+ ++PGA GKDPL ++DEAI+Y 
Sbjct: 289 --SCGMVHKEEAGADIDFCY--CSCXKDRIEETLRVLESLVPGAKGKDPLLVIDEAINYF 344

Query: 350 QSLKLKAVAL 359
           + LK +++ L
Sbjct: 345 EVLKTRSLLL 354

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449525822|ref|XP_004169915.1| PREDICTED: transcription factor bHLH143-like [Cucumis sativus]

 Score =  201 bits (510), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 135/361 (37%), Positives = 199/361 (55%), Gaps = 22/361 (6%)

Query: 1   MVKAHESWIYRQHSAWQLPDLNCMRTSLDPRQPECLPSLIAPENYMFSANAALPGYVSPG 60
           MVK  +SW    HSA  LP+LNC    L  R  +CL     P+  + SA     G  S  
Sbjct: 1   MVKTGDSWPQPGHSAGNLPNLNCTNELLKFRL-QCL----NPDTNVSSAQTEFWG-SSIH 54

Query: 61  FANLKTEQINGAHKALQILPPRFQNLVASPYPYLNEIQPAFPCGFSEQAAPNEKLGSLQK 120
             +L  EQ N  ++ L   P  F  + ++  P L E Q     GF     P+      ++
Sbjct: 55  HGSLNWEQKN-ENRLLHSFPSYFGTMPSNALPCLVEKQFDSSLGFGRMTIPDSNTEFPKR 113

Query: 121 GLLVFDQSGNQTQLVYSSVCPSVLNTPATLKKEVSVNGFLQDKAIKRDQFTSVKPLLHEE 180
             ++FDQ+GNQT ++YSS    +   P ++  +   +G   D+            L H++
Sbjct: 114 EFIIFDQTGNQTSVMYSSDTAQI---PISISTKNCSHGLNDDEEDAAGDIDLKNYLFHKD 170

Query: 181 FDENHISGKECEMHEDTEEINALLYSDGDDDYSNGDDSEDDEVKSTDHSPVAIEGKYEKH 240
             ++ I+G+E EMHEDT+EINALLYSD D+ Y +     DDEV ST HSP  I+  Y+K 
Sbjct: 171 PLKSGIAGEESEMHEDTDEINALLYSDDDNHYIS-----DDEVTSTGHSPPLIKELYDKQ 225

Query: 241 DLTLEISEEVASSDGPNKRQKLLNGGYNKSSQTDTACSVQLEGSHECDNDAESGYANGQT 300
               E++EEVASSDGP KRQ++++GG+ K S+     SV+++  +    D +S Y  G +
Sbjct: 226 --IEEMNEEVASSDGPRKRQRMVDGGHKKLSEA--PVSVKVDALNNYRVDMKSSYTGGNS 281

Query: 301 QKEEIDFILGNMQSRKDKIHTALRILQGIIPGANGKDPLSLLDEAIDYLQSLKLKAVALG 360
           Q   +D    N  S+KDK+   L++L+ ++PGA GK P+ ++DEAIDYL+SLK KA A+G
Sbjct: 282 QGHLMD---SNFSSKKDKLRETLKLLETMVPGAEGKHPMLVIDEAIDYLKSLKFKAKAMG 338

Query: 361 V 361
           +
Sbjct: 339 L 339

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449438234|ref|XP_004136894.1| PREDICTED: transcription factor bHLH143-like [Cucumis sativus]

 Score =  200 bits (509), Expect = 7e-49,   Method: Compositional matrix adjust.
 Identities = 135/361 (37%), Positives = 199/361 (55%), Gaps = 22/361 (6%)

Query: 1   MVKAHESWIYRQHSAWQLPDLNCMRTSLDPRQPECLPSLIAPENYMFSANAALPGYVSPG 60
           MVK  +SW    HSA  LP+LNC    L  R  +CL     P+  + SA     G  S  
Sbjct: 1   MVKTGDSWPQPGHSAGNLPNLNCTNELLKFRL-QCL----NPDTNVSSAQTEFWG-SSIH 54

Query: 61  FANLKTEQINGAHKALQILPPRFQNLVASPYPYLNEIQPAFPCGFSEQAAPNEKLGSLQK 120
             +L  EQ N  ++ L   P  F  + ++  P L E Q     GF     P+      ++
Sbjct: 55  HGSLNWEQKN-ENRLLHSFPSYFGTMHSNALPCLVEKQFDSSLGFGRMTIPDSNTEFPKR 113

Query: 121 GLLVFDQSGNQTQLVYSSVCPSVLNTPATLKKEVSVNGFLQDKAIKRDQFTSVKPLLHEE 180
             ++FDQ+GNQT ++YSS    +   P ++  +   +G   D+            L H++
Sbjct: 114 EFIIFDQTGNQTSVMYSSDTAQI---PISISTKNCSHGLNDDEEDAAGDIDLKNYLFHKD 170

Query: 181 FDENHISGKECEMHEDTEEINALLYSDGDDDYSNGDDSEDDEVKSTDHSPVAIEGKYEKH 240
             ++ I+G+E EMHEDT+EINALLYSD D+ Y +     DDEV ST HSP  I+  Y+K 
Sbjct: 171 PLKSGIAGEESEMHEDTDEINALLYSDDDNHYIS-----DDEVTSTGHSPPLIKELYDKQ 225

Query: 241 DLTLEISEEVASSDGPNKRQKLLNGGYNKSSQTDTACSVQLEGSHECDNDAESGYANGQT 300
               E++EEVASSDGP KRQ++++GG+ K S+     SV+++  +    D +S Y  G +
Sbjct: 226 --IEEMNEEVASSDGPRKRQRMVDGGHKKLSEA--PVSVKVDALNNYRVDMKSSYTGGNS 281

Query: 301 QKEEIDFILGNMQSRKDKIHTALRILQGIIPGANGKDPLSLLDEAIDYLQSLKLKAVALG 360
           Q   +D    N  S+KDK+   L++L+ ++PGA GK P+ ++DEAIDYL+SLK KA A+G
Sbjct: 282 QGHLMD---SNFSSKKDKLRETLKLLETMVPGAEGKHPMLVIDEAIDYLKSLKFKAKAMG 338

Query: 361 V 361
           +
Sbjct: 339 L 339

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224140751|ref|XP_002323742.1| predicted protein [Populus trichocarpa] gi|222866744|gb|EEF03875.1| predicted protein [Populus trichocarpa]

 Score =  197 bits (500), Expect = 8e-48,   Method: Compositional matrix adjust.
 Identities = 140/361 (38%), Positives = 179/361 (49%), Gaps = 55/361 (15%)

Query: 1   MVKAHESWIYRQHSAWQLPDLNCMRTSLDPRQPECLPSLIAPENYMFSANAALPGYVSPG 60
           MVKA  SW+   HS  +LP+ +CM TSLDP Q +CLP  + P   M SAN A+PG     
Sbjct: 1   MVKAEGSWLSPPHSTRKLPNFHCMTTSLDPAQLQCLPECMNPGTRMTSANMAMPGLAVSS 60

Query: 61  FANLKTEQINGAHKALQILPPRFQNLVASPYPYLNEIQPAFPCGFSEQAAPNEKLGSLQK 120
             N KT+Q N A+   Q LP  FQN + +  PY+ E    F  GF  +   N   G  Q+
Sbjct: 61  IPNFKTQQGNEAYGLPQCLPSNFQNFLHATNPYVRENLSVFSYGFGREGVRNPIPG-CQR 119

Query: 121 GLLVFDQSGNQTQLVYSSVCPSVLNTPATLKKEVSVNGFLQDKAIKRDQFTSVKPLLHEE 180
             LVFDQSGN+ +L+YSS  P V    A   K +       + A K DQ   +K  L E 
Sbjct: 120 RFLVFDQSGNEQRLIYSSFGPPVPKPTAADAKPIPGYFDHNEYAAKMDQTKLMK--LPEV 177

Query: 181 FDENHISGKECEMHEDTEEINALLYSDGDDDYSNGDDSEDDEVKSTDHSPVAIEGKYEKH 240
            DENH + +E ++ E+         SDG +                      I+G Y+K 
Sbjct: 178 SDENHFTSEEKKIIEEEGT-----SSDGPNKRQK-----------------LIDGGYKK- 214

Query: 241 DLTLEISEEVASSDGPNKRQKLLNGGYNKSSQTDTACSVQLEGSHECDNDAESGYANGQT 300
                                        SS  DTA SV++E  H  D+D ES YA  Q+
Sbjct: 215 -----------------------------SSLVDTASSVKVETFHGYDDDMESNYAKRQS 245

Query: 301 QKEEIDFILGNMQSRKDKIHTALRILQGIIPGANGKDPLSLLDEAIDYLQSLKLKAVALG 360
           Q  E+  IL + Q RKDKI   L+IL+ IIPGA  K+PL +LDEAIDYL+SLKLKA  LG
Sbjct: 246 QDGEMISILSSKQFRKDKIRATLKILESIIPGAKDKEPLLVLDEAIDYLKSLKLKAKTLG 305

Query: 361 V 361
           V
Sbjct: 306 V 306

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356557577|ref|XP_003547092.1| PREDICTED: transcription factor bHLH143-like [Glycine max]

 Score =  189 bits (479), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 140/367 (38%), Positives = 189/367 (51%), Gaps = 43/367 (11%)

Query: 5   HESWIYRQHSAWQLPDLNCMRTSLDPRQPECLPSLIAPENYMFSANAALPGYVSPGFANL 64
           H SW Y QH AW  P LNC  TS +P   +   + + P   +F A +  PG+ +P   N 
Sbjct: 68  HRSWPYPQHVAWPSPYLNCSCTSAEPSS-QVHSAYMNPSTCIFPAVSVFPGFTAPALPNW 126

Query: 65  KTEQINGAHKALQILPPRFQNLVASPYPYLNEIQPAFPCGFSEQAAPNEKLGSLQKGLLV 124
           KTEQ N  H   Q   P  +       PYL E         +  A  N    S QK LL+
Sbjct: 127 KTEQTNEVHGFHQY--PHSE-------PYLKETH-------TGGAMQNANHASFQKKLLI 170

Query: 125 FDQSGNQTQLVYSSVCPSVLNTPATLKKEVSVNGF-LQDKAIKRDQ-----FTSVKPLLH 178
           FD SG++T+++YS V   V +   T  K   V    ++ +A    Q     +TS      
Sbjct: 171 FDHSGSKTRMLYSPVFSLVQSPTVTATKFAQVYHVNMEAQATNMGQKHLPIYTSP----- 225

Query: 179 EEFDENHISGKECEMHEDTEEINALLYSDGDDDYSNGDDSEDDEVKSTDHSPVAIEGKYE 238
           EE  ++HI  +E EMHEDTEEINALLYSD         D +DDEV ST HSP+  +  Y 
Sbjct: 226 EETGKDHIDNEESEMHEDTEEINALLYSD---------DDDDDEVTSTGHSPLVTKRTYV 276

Query: 239 KHDLTLEISEEVASSDGPNKRQKLLNGGYNK-SSQTDTACSVQLEGSHECDNDAESGYAN 297
             +    + +EVA SD PNKRQKL++ GYN      D+A S +L    E  +DAES Y++
Sbjct: 277 MQEQFAGMKKEVAGSDWPNKRQKLIDSGYNTLPPLMDSASSERLNEMCEYASDAESKYSS 336

Query: 298 -----GQTQKEEIDFILGNMQSRKDKIHTALRILQGIIPGANGKDPLSLLDEAIDYLQSL 352
                   Q +E +    ++Q +KDKI   LR+L+  IPGA GK PL ++D  I+YL+SL
Sbjct: 337 SGGVYAARQTKEDNPTPADIQLKKDKIRELLRVLENFIPGAKGKHPLLVIDGTIEYLKSL 396

Query: 353 KLKAVAL 359
             +A  L
Sbjct: 397 ASQAGTL 403

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	361
TAIR|locus:2184822	326	AT5G09460 [Arabidopsis thalian	0.839	0.929	0.374	2.2e-34
TAIR|locus:2173433	348	SAC51 "SUPPRESSOR OF ACAULIS 5	0.512	0.531	0.412	3.6e-25
TAIR|locus:2170111	311	AT5G50010 [Arabidopsis thalian	0.204	0.237	0.375	1.5e-08
UNIPROTKB|Q75KP4	315	OSJNBa0065F09.5 "Expressed pro	0.578	0.663	0.288	5.7e-08
UNIPROTKB|Q6Z861	254	P0572D06.2 "cDNA clone:002-118	0.188	0.267	0.388	3.5e-05
TAIR|locus:2155503	210	ALC "AT5G67110" [Arabidopsis t	0.191	0.328	0.380	0.00015
UNIPROTKB|Q75H21	384	OSJNBa0027H16.21 "Putative unc	0.296	0.278	0.309	0.00022
TAIR|locus:2198253	251	AT1G29950 [Arabidopsis thalian	0.321	0.462	0.271	0.00035
TAIR|locus:2012345	524	PIF3 "AT1G09530" [Arabidopsis	0.285	0.196	0.327	0.00076

TAIR|locus:2184822 AT5G09460 [Arabidopsis thaliana (taxid:3702)]

 Score = 373 (136.4 bits), Expect = 2.2e-34, P = 2.2e-34
 Identities = 125/334 (37%), Positives = 173/334 (51%)

Query:    28 LDPRQPECLPSLIAPENYMFSANAALPGYVSPGFANLKTEQINGAHKALQILPPRFQNLV 87
             LD +Q + LP  + P+  +   + A   Y  PG    +  ++  A    + L P FQ L+
Sbjct:     3 LDTKQQKWLPLGLNPQACV--QDKATE-YFRPGIPFPELGKVYAAEHQFRYLQPPFQALL 59

Query:    88 ASPYPYLNEIQPAFPC--GFSEQ-AAPNEKLGSLQKGLLVFDQSGNQTQLVYSSVCPSVL 144
              S Y           C  G S   AAP   L S +K  +VFDQSG QT+L+    C   L
Sbjct:    60 -SRYDQ-QSCGKQVSCLNGRSSNGAAPEGALKSSRKRFIVFDQSGEQTRLLQ---CGFPL 114

Query:   145 NTPATLKKEV-SVNGFLQ-DKAIKRDQFTSVKPLLHEEFDENHISGKE-CEMHEDTEEIN 201
               P+++  E  ++ G L  +K   +D     K L HE+    H +G+E  EMHEDTEEIN
Sbjct:   115 RFPSSMDAERGNILGALHPEKGFSKDHAIQEKILQHED----HENGEEDSEMHEDTEEIN 170

Query:   202 ALLXXXXXXXXXXXXXXXXXXVKSTDHSPVAIEGKYEKHDLTLEISEEVASS-DGPN-KR 259
             ALL                  V ST HSP  +E   +  ++T E  +E  S+ DGP  KR
Sbjct:   171 ALLYSDDDDNDDWESDDE---VMSTGHSPFTVE--QQACNITTEELDETESTVDGPLLKR 225

Query:   260 QKLLNGGYNKSSQTDTACSVQLEGSHECDNDAESGYANGQTQKEEIDFILGNMQSRKDKI 319
             QKLL+  Y  SS +    + +++G  + +N  ES  ++    K+E    L + QSRKDKI
Sbjct:   226 QKLLDHSYRDSSPSLVG-TTKVKGLSD-ENLPESNISS----KQETGSGLSDEQSRKDKI 279

Query:   320 HTALRILQGIIPGANGKDPLSLLDEAIDYLQSLK 353
             HTALRIL+ ++PGA GK+ L LLDEAIDYL+ LK
Sbjct:   280 HTALRILESVVPGAKGKEALLLLDEAIDYLKLLK 313

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

TAIR|locus:2173433 SAC51 "SUPPRESSOR OF ACAULIS 51" [Arabidopsis thaliana (taxid:3702)]

 Score = 286 (105.7 bits), Expect = 3.6e-25, P = 3.6e-25
 Identities = 83/201 (41%), Positives = 105/201 (52%)

Query:   165 IKRDQFTSVKPLLHEEFDENHIS-GKECEMHEDTEEINALLXXXXXXXXXXXXXXXXXXV 223
             +K  +   ++    E+ +E H S G E EMHEDTEEINALL                  V
Sbjct:   130 VKLSELQGIEKAFKEDGEEFHKSDGTESEMHEDTEEINALLYSDDDYDDDCESDDE---V 186

Query:   224 KSTDHSPVAIEGKYEKHDLTLEISEEVASSDGPNKRQKLL---NGGYNKSSQTDTACSVQ 280
              ST HSP   EG   K +L     EE+   DGP KRQKLL   N   + SS   T  S Q
Sbjct:   187 MSTGHSPYPNEGVCNKREL-----EEI---DGPCKRQKLLDKVNNISDLSSLVGTESSTQ 238

Query:   281 LEGSHECDNDAESGYANGQTQKEEIDFILGNMQSRKDKIHTALRILQGIIPGANGKDPLS 340
             L GS     D +   +   + KE+    L N QS+KDKI TAL+IL+ ++PGA G + L 
Sbjct:   239 LNGSSFL-KDKKLPESKTISTKEDTGSGLSNEQSKKDKIRTALKILESVVPGAKGNEALL 297

Query:   341 LLDEAIDYLQSLKLKAVALGV 361
             LLDEAIDYL+ LK   ++  V
Sbjct:   298 LLDEAIDYLKLLKRDLISTEV 318

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0009826 "unidimensional cell growth" evidence=IMP

GO:0000271 "polysaccharide biosynthetic process" evidence=RCA

GO:0007155 "cell adhesion" evidence=RCA

GO:0009825 "multidimensional cell growth" evidence=RCA

GO:0009855 "determination of bilateral symmetry" evidence=RCA

GO:0009887 "organ morphogenesis" evidence=RCA

GO:0009932 "cell tip growth" evidence=RCA

GO:0010051 "xylem and phloem pattern formation" evidence=RCA

GO:0010075 "regulation of meristem growth" evidence=RCA

GO:0010090 "trichome morphogenesis" evidence=RCA

GO:0010413 "glucuronoxylan metabolic process" evidence=RCA

GO:0010817 "regulation of hormone levels" evidence=RCA

GO:0043481 "anthocyanin accumulation in tissues in response to UV light" evidence=RCA

GO:0045010 "actin nucleation" evidence=RCA

GO:0045492 "xylan biosynthetic process" evidence=RCA

GO:0048439 "flower morphogenesis" evidence=RCA

GO:0048519 "negative regulation of biological process" evidence=RCA

GO:0048765 "root hair cell differentiation" evidence=RCA

GO:0048767 "root hair elongation" evidence=RCA

GO:0071555 "cell wall organization" evidence=RCA

TAIR|locus:2170111 AT5G50010 [Arabidopsis thaliana (taxid:3702)]

 Score = 118 (46.6 bits), Expect = 1.5e-08, Sum P(2) = 1.5e-08
 Identities = 30/80 (37%), Positives = 45/80 (56%)

Query:   281 LEGSHECDNDAESGYANGQTQKEEIDFIL-GNMQSRK---DKIHTALRILQGIIPGANGK 336
             LE S+E   DAES    G      I F+    + S K   +KI   + +L+ ++PG    
Sbjct:   229 LETSNESMRDAESSC--GSCDNTRISFLKRSKLSSNKIGEEKIFETVSLLRSVVPGEELV 286

Query:   337 DPLSLLDEAIDYLQSLKLKA 356
             DP+ ++D AIDYL+SLK++A
Sbjct:   287 DPILVIDRAIDYLKSLKMEA 306

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0048446 "petal morphogenesis" evidence=RCA

UNIPROTKB|Q75KP4 OSJNBa0065F09.5 "Expressed protein (With alternative splicing)" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 142 (55.0 bits), Expect = 5.7e-08, Sum P(2) = 5.7e-08
 Identities = 72/250 (28%), Positives = 112/250 (44%)

Query:   137 SSVCPSV-LNTPATLKKEVSV------NGFLQDKAIKRDQFTSVKPLL-HEEFDENHISG 188
             +++ PSV L+T  TL+K   V      N F     + +    +V  L    E +   +  
Sbjct:    77 TTLVPSVGLSTAETLRKRPLVFFHNVNNTFTVGPLLSKGTLDTVPELQGSNETNVTDVGA 136

Query:   189 KECE-MHEDTEEINALLXXXXXXXXXXXXXXXXXXVKSTDHSPVAIEGKYEKHDLTLEIS 247
             +  E MHE+TEEI+ALL                  V+  ++       KY   + T+ + 
Sbjct:   137 QNTECMHENTEEIDALLCSDSDEGCLK--------VQELNNRV----RKYPMQNDTMSV- 183

Query:   248 EEVASSDG--PNKRQKLLNGGYNKSSQTDTACSV-------QLEGSHE------CDNDAE 292
             E VAS+    P K+++L +G     S  DTA S        Q   SH+      C  + E
Sbjct:   184 ESVASAGASQPAKKRRLSSG--TDRSVVDTASSARPDHSVDQKHLSHDDDAQSCCIGEVE 241

Query:   293 SGYANGQTQKEEIDFILG--NMQSRKDKIHTALRILQGIIPGANGKDPLSLLDEAIDYLQ 350
             S +     + EE +   G  + + R+++I   +  L+ I+PG   KD  ++LDEAI YL+
Sbjct:   242 SDHQFALREGEEAEGDDGPDDRKRRRERIQETVAALRKIVPGGIAKDATAVLDEAICYLK 301

Query:   351 SLKLKAVALG 360
              LKLK   LG
Sbjct:   302 YLKLKVKTLG 311

GO:0005634 "nucleus" evidence=IC

UNIPROTKB|Q6Z861 P0572D06.2 "cDNA clone:002-118-A09, full insert sequence" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 119 (46.9 bits), Expect = 3.5e-05, Sum P(2) = 3.5e-05
 Identities = 28/72 (38%), Positives = 42/72 (58%)

Query:   294 GYANGQTQKEEIDFILGNMQSR----KDKIHTALRILQGIIPGANGKDPLSLLDEAIDYL 349
             GY +G +         G  Q+R    K+++   +R L+GIIPG N  D  ++LDEA+ YL
Sbjct:   178 GYRDGSSPDSTCSSSYGGGQARPGRKKERMKKMVRTLKGIIPGGNQMDTPAVLDEAVRYL 237

Query:   350 QSLKLKAVALGV 361
             +SLK++   LGV
Sbjct:   238 KSLKVEVKKLGV 249

GO:0005634 "nucleus" evidence=IC

TAIR|locus:2155503 ALC "AT5G67110" [Arabidopsis thaliana (taxid:3702)]

 Score = 115 (45.5 bits), Expect = 0.00015, P = 0.00015
 Identities = 27/71 (38%), Positives = 41/71 (57%)

Query:   293 SGYANGQTQKEEIDFILGNM--QSRKDKIHTALRILQGIIPGANGKDPLSLLDEAIDYLQ 350
             SG     + K  ID    N+  + R+ KI+  ++ LQ +IP +N  D  S+LDEAI+YL+
Sbjct:    81 SGAKQRNSLKRNIDAQFHNLSEKKRRSKINEKMKALQKLIPNSNKTDKASMLDEAIEYLK 140

Query:   351 SLKLKAVALGV 361
              L+L+   L V
Sbjct:   141 QLQLQVQTLAV 151

GO:0003677 "DNA binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM;ISS;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0010047 "fruit dehiscence" evidence=IMP

UNIPROTKB|Q75H21 OSJNBa0027H16.21 "Putative uncharacterized protein OSJNBa0027H16.21" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 113 (44.8 bits), Expect = 0.00022, Sum P(2) = 0.00022
 Identities = 39/126 (30%), Positives = 61/126 (48%)

Query:   238 EKHDLTLEISEEVASSDGPNKRQKLLNG---GYNKSSQTDTACSVQLEGSHECDNDAESG 294
             +K D T EI   +++ DG  +   L  G   G       D+ CS     S +C       
Sbjct:   148 QKED-TDEIDALMSTEDGEEEDDVLSTGRTPGCRAGGSPDSTCSSGASRS-DC------- 198

Query:   295 YANGQTQKEEIDFILGNMQSRKDKIHTALRILQGIIPGANGKDPLSLLDEAIDYLQSLKL 354
                G  +K E     G  + +K+++   +R L+GIIPG +  D  ++LDEA+ YL+SLK+
Sbjct:   199 ---GGGRKPEA----GGGERKKERMKKMMRTLKGIIPGGDRMDTPAVLDEAVRYLKSLKV 251

Query:   355 KAVALG 360
             +   LG
Sbjct:   252 EVKKLG 257

GO:0005634 "nucleus" evidence=IC

TAIR|locus:2198253 AT1G29950 [Arabidopsis thaliana (taxid:3702)]

 Score = 101 (40.6 bits), Expect = 0.00035, Sum P(2) = 0.00035
 Identities = 35/129 (27%), Positives = 61/129 (47%)

Query:   241 DLTLEISEEVASSDGPNKRQKLLNGGYNKSSQTDTACSVQLE-GSHECDNDAES-GYANG 298
             D  L   E+   +D  N+ ++  +GG   S +  TA +   + G+   ++   S GY N 
Sbjct:   121 DALLSADEDYEENDD-NEGEE--DGG--DSEEVSTARTSSRDYGNTTAESCCSSYGYNNN 175

Query:   299 QTQKEEIDFILGNMQSRKD------KIHTALRILQGIIPGANGKDPLSLLDEAIDYLQSL 352
                      + G+  S  +      K+   + +L+ I+PG    +   +LDEA+ YL+SL
Sbjct:   176 NNNNSRKQSLSGSASSSNNDGKGRKKMKKMMGVLRRIVPGGEQMNTACVLDEAVQYLKSL 235

Query:   353 KLKAVALGV 361
             K++A  LGV
Sbjct:   236 KIEAQKLGV 244

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

TAIR|locus:2012345 PIF3 "AT1G09530" [Arabidopsis thaliana (taxid:3702)]

 Score = 116 (45.9 bits), Expect = 0.00076, P = 0.00076
 Identities = 35/107 (32%), Positives = 54/107 (50%)

Query:   252 SSDGPNKRQKLLNGGYNKSSQTDTACSVQLEGSHECDNDAESGYAN-GQTQKEEIDFILG 310
             S DGP++   L     + + Q D  C  +       D   E+G +  G   K      + 
Sbjct:   290 SLDGPSESPSLSLKRKHSNIQ-DIDCHSEDVEEESGDGRKEAGPSRTGLGSKRSRSAEVH 348

Query:   311 NMQSRK--DKIHTALRILQGIIPGANGKDPLSLLDEAIDYLQSLKLK 355
             N+  R+  D+I+  +R LQ +IP  N  D  S+LDEAI+YL+SL+L+
Sbjct:   349 NLSERRRRDRINEKMRALQELIPNCNKVDKASMLDEAIEYLKSLQLQ 395


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.313   0.131   0.379    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      361       343   0.00096  116 3  11 23  0.46    34
                                                     33  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  9
  No. of states in DFA:  612 (65 KB)
  Total size of DFA:  242 KB (2131 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  31.08u 0.08s 31.16t   Elapsed:  00:00:03
  Total cpu time:  31.08u 0.08s 31.16t   Elapsed:  00:00:03
  Start:  Sat May 11 03:31:37 2013   End:  Sat May 11 03:31:40 2013

GO:0003677 "DNA binding" evidence=ISS;IDA

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0009639 "response to red or far red light" evidence=IMP

GO:0010017 "red or far-red light signaling pathway" evidence=RCA;IMP

GO:0005515 "protein binding" evidence=IPI

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0042802 "identical protein binding" evidence=IPI

GO:0031539 "positive regulation of anthocyanin metabolic process" evidence=IMP

GO:0009740 "gibberellic acid mediated signaling pathway" evidence=IMP

GO:0009704 "de-etiolation" evidence=IMP

GO:0007623 "circadian rhythm" evidence=RCA

GO:0009630 "gravitropism" evidence=RCA

GO:0007165 "signal transduction" evidence=TAS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9FY69	BH143_ARATH	No assigned EC number	0.3897	0.8476	0.9386	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	361
smart00353	53	HLH helix loop helix domain.	99.18
cd00083	60	HLH Helix-loop-helix domain, found in specific DNA	99.1
PF00010	55	HLH: Helix-loop-helix DNA-binding domain only nucl	98.89
KOG1318	411	consensus Helix loop helix transcription factor EB	97.79
KOG4304	250	consensus Transcriptional repressors of the hairy/	97.61
KOG1319	229	consensus bHLHZip transcription factor BIGMAX [Tra	97.52
KOG3561	803	consensus Aryl-hydrocarbon receptor nuclear transl	97.3
KOG2483	232	consensus Upstream transcription factor 2/L-myc-2	96.59
KOG3960	284	consensus Myogenic helix-loop-helix transcription	96.4
KOG0561	373	consensus bHLH transcription factor [Transcription	95.67
PLN03217	93	transcription factor ATBS1; Provisional	95.34
KOG4029	228	consensus Transcription factor HAND2/Transcription	92.82
KOG2588	953	consensus Predicted DNA-binding protein [Transcrip	90.82
KOG3910	632	consensus Helix loop helix transcription factor [T	83.23

>smart00353 HLH helix loop helix domain

Probab=99.18  E-value=4.7e-11  Score=86.19  Aligned_cols=47  Identities=26%  Similarity=0.419  Sum_probs=44.2

Q ss_pred             hhhhhHHHHHHHHHHHHhcCCC---CCCCChhhhHHHHHHHHHHHHHHHH
Q 036175          311 NMQSRKDKIHTALRILQGIIPG---ANGKDPLSLLDEAIDYLQSLKLKAV  357 (361)
Q Consensus       311 seR~RReKI~erl~~Lq~LVPg---~~k~DkaSvLdeAI~YlK~Lq~qVk  357 (361)
                      .||+||++|++.|..|+.+||.   ..++|+++||++||+||+.|+.+++
T Consensus         3 ~Er~RR~~~n~~~~~L~~lip~~~~~~k~~k~~iL~~ai~yi~~L~~~~~   52 (53)
T smart00353        3 RERRRRRKINEAFDELRSLLPTLPNNKKLSKAEILRLAIEYIKSLQEELQ   52 (53)
T ss_pred             HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence            5899999999999999999994   6689999999999999999999986

>cd00083 HLH Helix-loop-helix domain, found in specific DNA- binding proteins that act as transcription factors; 60-100 amino acids long

Probab=99.10  E-value=1.3e-10  Score=85.04  Aligned_cols=50  Identities=22%  Similarity=0.353  Sum_probs=46.2

Q ss_pred             ccchhhhhHHHHHHHHHHHHhcCCCC---CCCChhhhHHHHHHHHHHHHHHHH
Q 036175          308 ILGNMQSRKDKIHTALRILQGIIPGA---NGKDPLSLLDEAIDYLQSLKLKAV  357 (361)
Q Consensus       308 ~~~seR~RReKI~erl~~Lq~LVPg~---~k~DkaSvLdeAI~YlK~Lq~qVk  357 (361)
                      ....||+||++|++.|..|+.+||+.   .++|+++||..||+||++|+.+++
T Consensus         8 ~~~~Er~RR~~~n~~~~~L~~llp~~~~~~k~~k~~iL~~a~~yI~~L~~~~~   60 (60)
T cd00083           8 HNLRERRRRERINDAFDELRSLLPTLPPSKKLSKAEILRKAVDYIKSLQELLQ   60 (60)
T ss_pred             HhHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHhC
Confidence            34579999999999999999999999   789999999999999999999864

A DNA-binding basic region is followed by two alpha-helices separated by a variable loop region; HLH forms homo- and heterodimers, dimerization creates a parallel, left-handed, four helix bundle; the basic region N-terminal to the first amphipathic helix mediates high-affinity DNA-binding; there are several groups of HLH proteins: those (E12/E47) which bind specific hexanucleotide sequences such as E-box (5-CANNTG-3) or StRE 5-ATCACCCCAC-3), those lacking the basic domain (Emc, Id) function as negative regulators since they fail to bind DNA, those (hairy, E(spl), deadpan) which repress transcription although they can bind specific hexanucleotide sequences such as N-box (5-CACGc/aG-3), those which have a COE domain (Collier/Olf-1/EBF) which is involved in both in dimerization and in DNA binding, and those which bind pentanucleotides ACGTG or GCGTG and

>PF00010 HLH: Helix-loop-helix DNA-binding domain only nuclear translocator protein (Arnt)

Probab=98.89  E-value=2.6e-09  Score=78.43  Aligned_cols=45  Identities=27%  Similarity=0.519  Sum_probs=42.0

Q ss_pred             cchhhhhHHHHHHHHHHHHhcCCCC-----CCCChhhhHHHHHHHHHHHH
Q 036175          309 LGNMQSRKDKIHTALRILQGIIPGA-----NGKDPLSLLDEAIDYLQSLK  353 (361)
Q Consensus       309 ~~seR~RReKI~erl~~Lq~LVPg~-----~k~DkaSvLdeAI~YlK~Lq  353 (361)
                      ...||+||++|++.|..|+.+||..     .++|+++||..||+||+.||
T Consensus         6 ~~~Er~RR~~i~~~~~~L~~llp~~~~~~~~k~~K~~iL~~ai~yI~~Lq   55 (55)
T PF00010_consen    6 NERERRRRDRINDCFDELRELLPSCSAGSSRKLSKASILQKAIDYIKQLQ   55 (55)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHCCSSHHCCTTSSSSHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccchhccccccCCHHHHHHHHHHHHHHhC
Confidence            3579999999999999999999997     57899999999999999997

; InterPro: IPR011598 The helix-loop-helix (HLH) DNA-binding domain consists of a closed bundle of four helices in a left-handed twist with two crossover connections. The HLH domain directs dimerisation, and is juxtaposed to basic regions to create a DNA interaction interface surface that recognises specific DNA sequences. Basic region/HLH (bHLH) proteins regulate diverse biological pathways []. bHLH proteins include MyoD [], SREBPs (sterol regulatory element binding proteins) [], and yeast Pho4 (phosphatase system) []. In certain proteins the bHLH domain contains a leucine-zipper motif. The bHLH/leucine zipper (bHLHZip) domain specifies dimerisation within a network of proteins and determines sequence-specific DNA binding []. bHLHZip domains occur in the transcription factors Myc, Mad, Max and Usf [, ]. This entry is bHLHZip, which covers the bHLH domain and the leucine zipper motif, when present.; PDB: 1NLW_A 1NKP_D 1A93_A 2A93_A 1AM9_C 3U5V_A 1A0A_B 2QL2_C 1UKL_C 1AN4_B ....

>KOG1318 consensus Helix loop helix transcription factor EB [Transcription]

Probab=97.79  E-value=3e-05  Score=79.03  Aligned_cols=50  Identities=20%  Similarity=0.350  Sum_probs=44.4

Q ss_pred             ccchhhhhHHHHHHHHHHHHhcCCCCC----CCChhhhHHHHHHHHHHHHHHHH
Q 036175          308 ILGNMQSRKDKIHTALRILQGIIPGAN----GKDPLSLLDEAIDYLQSLKLKAV  357 (361)
Q Consensus       308 ~~~seR~RReKI~erl~~Lq~LVPg~~----k~DkaSvLdeAI~YlK~Lq~qVk  357 (361)
                      +.--|||||++||++|+.|..|||.+.    +..|..||..+.+|++.||..-+
T Consensus       237 HNeVERRRR~nIN~~IkeLg~liP~~~~~~~~~nKgtILk~s~dYIr~Lqq~~q  290 (411)
T KOG1318|consen  237 HNEVERRRRENINDRIKELGQLIPKCNSEDMKSNKGTILKASCDYIRELQQTLQ  290 (411)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHhCCCCCcchhhcccchhhHHHHHHHHHHHHHHH
Confidence            344599999999999999999999993    56799999999999999998765

>KOG4304 consensus Transcriptional repressors of the hairy/E(spl) family (contains HLH) [Transcription]

Probab=97.61  E-value=2.8e-05  Score=74.53  Aligned_cols=46  Identities=22%  Similarity=0.385  Sum_probs=41.1

Q ss_pred             hhhhhHHHHHHHHHHHHhcCCCC--------CCCChhhhHHHHHHHHHHHHHHH
Q 036175          311 NMQSRKDKIHTALRILQGIIPGA--------NGKDPLSLLDEAIDYLQSLKLKA  356 (361)
Q Consensus       311 seR~RReKI~erl~~Lq~LVPg~--------~k~DkaSvLdeAI~YlK~Lq~qV  356 (361)
                      =|||||.|||+-|..|+.|||..        .|++||.||+-|++|||.|+...
T Consensus        39 ~EKkRRaRIN~~L~eLK~Li~e~~~~~~~~~sklEKAdILEltV~hL~~l~~~~   92 (250)
T KOG4304|consen   39 LEKKRRARINRCLDELKDLIPEALKKDGQRHSKLEKADILELTVNHLRQLQRSQ   92 (250)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHhccc
Confidence            38999999999999999999975        35679999999999999998754

>KOG1319 consensus bHLHZip transcription factor BIGMAX [Transcription]

Probab=97.52  E-value=0.00011  Score=68.86  Aligned_cols=50  Identities=26%  Similarity=0.346  Sum_probs=43.5

Q ss_pred             ccchhhhhHHHHHHHHHHHHhcCCCCC-------CCChhhhHHHHHHHHHHHHHHHH
Q 036175          308 ILGNMQSRKDKIHTALRILQGIIPGAN-------GKDPLSLLDEAIDYLQSLKLKAV  357 (361)
Q Consensus       308 ~~~seR~RReKI~erl~~Lq~LVPg~~-------k~DkaSvLdeAI~YlK~Lq~qVk  357 (361)
                      +.-+||+||+-|+.-..-||.|||-+-       |+-+|.||-.||+|+.+|+.+..
T Consensus        66 HtqaEqkRRdAIk~GYddLq~LvP~cq~~ds~g~KlskA~ILqksidyi~~L~~~k~  122 (229)
T KOG1319|consen   66 HTQAEQKRRDAIKRGYDDLQTLVPTCQQQDSIGQKLSKAIILQKTIDYIQFLHKEKK  122 (229)
T ss_pred             HHHHHHHHHHHHHhchHHHHHhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            445799999999999999999999764       55699999999999999987654

>KOG3561 consensus Aryl-hydrocarbon receptor nuclear translocator [Transcription]

Probab=97.30  E-value=0.00023  Score=77.64  Aligned_cols=46  Identities=24%  Similarity=0.391  Sum_probs=43.2

Q ss_pred             chhhhhHHHHHHHHHHHHhcCCCCC----CCChhhhHHHHHHHHHHHHHH
Q 036175          310 GNMQSRKDKIHTALRILQGIIPGAN----GKDPLSLLDEAIDYLQSLKLK  355 (361)
Q Consensus       310 ~seR~RReKI~erl~~Lq~LVPg~~----k~DkaSvLdeAI~YlK~Lq~q  355 (361)
                      ..|||||+|+|.-|..|.+|||.+.    |+||..||..||++||.++..
T Consensus        26 ~~EKrRRdq~N~yI~ELs~Mvp~~~~~~RK~DK~tVLr~aV~~lr~~k~~   75 (803)
T KOG3561|consen   26 EIEKRRRDQMNKYIEELSEMVPTNASLSRKPDKLTVLRMAVDHLRLIKEQ   75 (803)
T ss_pred             hHHHHHHHHHHHHHHHHHHhhhcchhcccCchHHHHHHHHHHHHHHHhhh
Confidence            4689999999999999999999986    899999999999999999875

>KOG2483 consensus Upstream transcription factor 2/L-myc-2 protein [Transcription]

Probab=96.59  E-value=0.0037  Score=59.75  Aligned_cols=49  Identities=29%  Similarity=0.487  Sum_probs=42.6

Q ss_pred             chhhhhHHHHHHHHHHHHhcCCCCCC--C-ChhhhHHHHHHHHHHHHHHHHH
Q 036175          310 GNMQSRKDKIHTALRILQGIIPGANG--K-DPLSLLDEAIDYLQSLKLKAVA  358 (361)
Q Consensus       310 ~seR~RReKI~erl~~Lq~LVPg~~k--~-DkaSvLdeAI~YlK~Lq~qVk~  358 (361)
                      --||+||..|++.|..|+.+||.+..  . ++++||+.|+.|++.|+.+...
T Consensus        65 ~LEk~RRahlk~~~~~Lk~~vP~~~~~~~~t~lsiL~kA~~~i~~l~~~~~~  116 (232)
T KOG2483|consen   65 ALEKRRRAHLKDCFESLKDSVPLLNGETRSTTLSILDKALEHIQSLERKSAT  116 (232)
T ss_pred             hhhHHHHHHHHHHHHHHHHhCCCCCCcchhhhhHhhhhHHHHHHHHHhHHHH
Confidence            35799999999999999999999853  2 4699999999999999987654

>KOG3960 consensus Myogenic helix-loop-helix transcription factor [Transcription]

Probab=96.40  E-value=0.0068  Score=59.13  Aligned_cols=50  Identities=20%  Similarity=0.280  Sum_probs=43.6

Q ss_pred             hhhhhHHHHHHHHHHHH-hcCCCCC-CCChhhhHHHHHHHHHHHHHHHHHhC
Q 036175          311 NMQSRKDKIHTALRILQ-GIIPGAN-GKDPLSLLDEAIDYLQSLKLKAVALG  360 (361)
Q Consensus       311 seR~RReKI~erl~~Lq-~LVPg~~-k~DkaSvLdeAI~YlK~Lq~qVk~Lg  360 (361)
                      .||||=.||||.|.+|+ .-+++-+ ..-|+.||..||+||..||.=+++++
T Consensus       125 RERRRLkKVNEAFE~LKRrT~~NPNQRLPKVEILRsAI~YIE~Lq~LL~~~~  176 (284)
T KOG3960|consen  125 RERRRLKKVNEAFETLKRRTSSNPNQRLPKVEILRSAIRYIERLQALLQEQD  176 (284)
T ss_pred             HHHHHHHHHHHHHHHHHhhcCCCccccccHHHHHHHHHHHHHHHHHHHHHhh
Confidence            58999999999999996 4677766 47999999999999999998887764

>KOG0561 consensus bHLH transcription factor [Transcription]

Probab=95.67  E-value=0.011  Score=59.17  Aligned_cols=48  Identities=19%  Similarity=0.389  Sum_probs=43.3

Q ss_pred             cchhhhhHHHHHHHHHHHHhcCCC--CCCCChhhhHHHHHHHHHHHHHHH
Q 036175          309 LGNMQSRKDKIHTALRILQGIIPG--ANGKDPLSLLDEAIDYLQSLKLKA  356 (361)
Q Consensus       309 ~~seR~RReKI~erl~~Lq~LVPg--~~k~DkaSvLdeAI~YlK~Lq~qV  356 (361)
                      .++||||-.-||.-|..||.|+|.  |.|..||.||..+.+||-.|+.+-
T Consensus        65 NsNERRRMQSINAGFqsLr~LlPr~eGEKLSKAAILQQTa~yI~~Le~~K  114 (373)
T KOG0561|consen   65 NSNERRRMQSINAGFQSLRALLPRKEGEKLSKAAILQQTADYIHQLEGHK  114 (373)
T ss_pred             cchHHHHHHhhhHHHHHHHHhcCcccchhhHHHHHHHHHHHHHHHHHhcc
Confidence            368999999999999999999998  568999999999999999987653

>PLN03217 transcription factor ATBS1; Provisional

Probab=95.34  E-value=0.024  Score=47.61  Aligned_cols=47  Identities=19%  Similarity=0.381  Sum_probs=41.3

Q ss_pred             hhhHHHHHHHHHHHHhcCCCC------CCCChhhhHHHHHHHHHHHHHHHHHh
Q 036175          313 QSRKDKIHTALRILQGIIPGA------NGKDPLSLLDEAIDYLQSLKLKAVAL  359 (361)
Q Consensus       313 R~RReKI~erl~~Lq~LVPg~------~k~DkaSvLdeAI~YlK~Lq~qVk~L  359 (361)
                      |--.+.|++-+..||.|+|..      .+.-.+-||.||-.|+|.|..+|..|
T Consensus        16 risddqi~dLvsKLq~llPe~r~~r~s~k~saskvLqEtC~YIrsLhrEvDdL   68 (93)
T PLN03217         16 RISEDQINDLIIKLQQLLPELRDSRRSDKVSAARVLQDTCNYIRNLHREVDDL   68 (93)
T ss_pred             CCCHHHHHHHHHHHHHHChHHHhhhccccccHHHHHHHHHHHHHHHHHHHHHH
Confidence            566889999999999999974      35677889999999999999999876

>KOG4029 consensus Transcription factor HAND2/Transcription factor TAL1/TAL2/LYL1 [Transcription]

Probab=92.82  E-value=0.12  Score=48.32  Aligned_cols=47  Identities=17%  Similarity=0.281  Sum_probs=41.5

Q ss_pred             hhhhhHHHHHHHHHHHHhcCCCC----CCCChhhhHHHHHHHHHHHHHHHH
Q 036175          311 NMQSRKDKIHTALRILQGIIPGA----NGKDPLSLLDEAIDYLQSLKLKAV  357 (361)
Q Consensus       311 seR~RReKI~erl~~Lq~LVPg~----~k~DkaSvLdeAI~YlK~Lq~qVk  357 (361)
                      .||.|-+-||..|..||.+||..    +|.-|+.+|-.||.||++|+.-++
T Consensus       116 RER~Rv~~vN~~f~~Lr~~lP~~~~~~kklSKveTLr~A~~YI~~L~~lL~  166 (228)
T KOG4029|consen  116 RERQRVQSVNSAFAELRALLPTEPPQSKKLSKVETLRLATSYIRYLTKLLA  166 (228)
T ss_pred             hhhhcccchhhhhHHHHhcCCCCCCcccccCcccchHHHHHHHHHHHHHhc
Confidence            48899999999999999999974    467999999999999999987554

>KOG2588 consensus Predicted DNA-binding protein [Transcription]

Probab=90.82  E-value=0.14  Score=57.47  Aligned_cols=51  Identities=22%  Similarity=0.322  Sum_probs=44.9

Q ss_pred             cchhhhhHHHHHHHHHHHHhcCCCCC-CCChhhhHHHHHHHHHHHHHHHHHh
Q 036175          309 LGNMQSRKDKIHTALRILQGIIPGAN-GKDPLSLLDEAIDYLQSLKLKAVAL  359 (361)
Q Consensus       309 ~~seR~RReKI~erl~~Lq~LVPg~~-k~DkaSvLdeAI~YlK~Lq~qVk~L  359 (361)
                      .--|||=|--||+|+..|+.+|||.. |+.|..+|..||+|+++|+..-+.+
T Consensus       281 N~IEKRYRsSINDKI~eLk~lV~g~~aKl~kSavLr~ai~~i~dl~~~nq~l  332 (953)
T KOG2588|consen  281 NIIEKRYRSSINDKIIELKDLVPGTEAKLNKSAVLRKAIDYIEDLQGYNQKL  332 (953)
T ss_pred             hHHHHHhhcchhHHHHHHHHhcCccHhhhhhhhhHHHHHHHHHHhhcccccc
Confidence            34588889999999999999999975 8899999999999999998765544

>KOG3910 consensus Helix loop helix transcription factor [Transcription]

Probab=83.23  E-value=1.1  Score=47.76  Aligned_cols=50  Identities=18%  Similarity=0.190  Sum_probs=41.5

Q ss_pred             hhhhhHHHHHHHHHHHHhcCCCCCC----CChhhhHHHHHHHHHHHHHHHHHhC
Q 036175          311 NMQSRKDKIHTALRILQGIIPGANG----KDPLSLLDEAIDYLQSLKLKAVALG  360 (361)
Q Consensus       311 seR~RReKI~erl~~Lq~LVPg~~k----~DkaSvLdeAI~YlK~Lq~qVk~Lg  360 (361)
                      .||.|-+.|||.|+.|..++=---|    .-|.-||..||.-|-.|+.||.+-.
T Consensus       533 RERlRVRDINeAfKELGRMCqlHlkSeKpQTKLgILhqAVsVIlsLEQQVRERN  586 (632)
T KOG3910|consen  533 RERLRVRDINEAFKELGRMCQLHLKSEKPQTKLGILHQAVSVILSLEQQVRERN  586 (632)
T ss_pred             hhheehhhHHHHHHHHHHHHHHhhcccCcchhhhHHHHHHHHHHHHHHHHHHcc
Confidence            5777888899999999988654322    4588999999999999999998754

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	361
1am9_A	82	Srebp-1A, protein (sterol regulatory element bindi	99.33
4h10_B	71	Circadian locomoter output cycles protein kaput; B	99.24
4ati_A	118	MITF, microphthalmia-associated transcription fact	99.21
1a0a_A	63	BHLH, protein (phosphate system positive regulator	99.2
4h10_A	73	ARYL hydrocarbon receptor nuclear translocator-LI	99.16
1an4_A	65	Protein (upstream stimulatory factor); protein-DNA	99.14
1nkp_B	83	MAX protein, MYC proto-oncogene protein; transcrip	99.03
1hlo_A	80	Protein (transcription factor MAX); transcriptiona	99.02
1nkp_A	88	C-MYC, MYC proto-oncogene protein; transcription,	99.0
3u5v_A	76	Protein MAX, transcription factor E2-alpha chimer;	98.89
1nlw_A	80	MAD protein, MAX dimerizer; transcription factor,	98.67
4f3l_A	361	Mclock, circadian locomoter output cycles protein	98.55
4f3l_B	387	BMAL1B; BHLH, PAS, circadian rhythm proteins, tran	98.37
1mdy_A	68	Protein (MYOD BHLH domain); protein-DNA complex, t	98.31
2ql2_B	60	Neurod1, neurogenic differentiation factor 1; basi	98.3
2lfh_A	68	DNA-binding protein inhibitor ID-3; structural gen	97.94
4ath_A	83	MITF, microphthalmia-associated transcription fact	97.73
4aya_A	97	DNA-binding protein inhibitor ID-2; cell cycle; 2.	96.91

>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C

Probab=99.33  E-value=9.2e-13  Score=104.49  Aligned_cols=53  Identities=19%  Similarity=0.261  Sum_probs=49.2

Q ss_pred             ccchhhhhHHHHHHHHHHHHhcCCCC-CCCChhhhHHHHHHHHHHHHHHHHHhC
Q 036175          308 ILGNMQSRKDKIHTALRILQGIIPGA-NGKDPLSLLDEAIDYLQSLKLKAVALG  360 (361)
Q Consensus       308 ~~~seR~RReKI~erl~~Lq~LVPg~-~k~DkaSvLdeAI~YlK~Lq~qVk~Lg  360 (361)
                      +...||+||++||++|..|+.|||++ .++|+++||.+||+||++||.+++.|.
T Consensus        10 H~~~ErrRR~~in~~f~~L~~lvP~~~~k~~Ka~IL~~Ai~YI~~Lq~~~~~L~   63 (82)
T 1am9_A           10 HNAIEKRYRSSINDKIIELKDLVVGTEAKLNKSAVLRKAIDYIRFLQHSNQKLK   63 (82)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhHHHHHHHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34579999999999999999999998 799999999999999999999999873

>4h10_B Circadian locomoter output cycles protein kaput; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}

Probab=99.24  E-value=1.1e-11  Score=97.10  Aligned_cols=51  Identities=24%  Similarity=0.417  Sum_probs=46.7

Q ss_pred             cchhhhhHHHHHHHHHHHHhcCCCC-CCCChhhhHHHHHHHHHHHHHHHHHh
Q 036175          309 LGNMQSRKDKIHTALRILQGIIPGA-NGKDPLSLLDEAIDYLQSLKLKAVAL  359 (361)
Q Consensus       309 ~~seR~RReKI~erl~~Lq~LVPg~-~k~DkaSvLdeAI~YlK~Lq~qVk~L  359 (361)
                      .-.||+||++||++|..|+.|||+. .|+||++||..||+|||.||.++.=|
T Consensus        13 n~iErrRRd~IN~~i~eL~~LvP~~~~K~dK~sIL~~aI~yik~Lq~~~~~~   64 (71)
T 4h10_B           13 NKSEKKRRDQFNVLIKELGSMLPGNARKMDKSTVLQKSIDFLRKHKEITAWL   64 (71)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTSSSCCSCCCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             hHHHhhHHHHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHHHHHHhhhHH
Confidence            3469999999999999999999986 48999999999999999999998755

>4ati_A MITF, microphthalmia-associated transcription factor; DNA-binding protein-DNA complex, melanoma; 2.60A {Mus musculus} PDB: 4atk_A

Probab=99.21  E-value=1.3e-11  Score=104.04  Aligned_cols=54  Identities=20%  Similarity=0.269  Sum_probs=47.6

Q ss_pred             ccccchhhhhHHHHHHHHHHHHhcCCCCC----CCChhhhHHHHHHHHHHHHHHHHHh
Q 036175          306 DFILGNMQSRKDKIHTALRILQGIIPGAN----GKDPLSLLDEAIDYLQSLKLKAVAL  359 (361)
Q Consensus       306 ~s~~~seR~RReKI~erl~~Lq~LVPg~~----k~DkaSvLdeAI~YlK~Lq~qVk~L  359 (361)
                      .++...||+||++||++|..|+.|||++.    |++|++||+.||+|||+||.+++.|
T Consensus        29 ~~Hn~~ERrRR~~In~~~~~L~~lvP~~~~~~~k~~Ka~IL~~aieYIk~Lq~~~~~l   86 (118)
T 4ati_A           29 DNHNLIERRRRFNINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKLQREQQRA   86 (118)
T ss_dssp             --CHHHHHHHHHHHHHHHHHHHHHSCCC----CCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHhhccCccccCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            34556899999999999999999999875    5789999999999999999999877

>1a0a_A BHLH, protein (phosphate system positive regulatory protein PHO4); transcription factor, basic helix loop helix; HET: DNA; 2.80A {Saccharomyces cerevisiae} SCOP: a.38.1.1

Probab=99.20  E-value=2.8e-12  Score=97.77  Aligned_cols=51  Identities=20%  Similarity=0.333  Sum_probs=45.0

Q ss_pred             cccchhhhhHHHHHHHHHHHHhcCCCC-------CCCChhhhHHHHHHHHHHHHHHHH
Q 036175          307 FILGNMQSRKDKIHTALRILQGIIPGA-------NGKDPLSLLDEAIDYLQSLKLKAV  357 (361)
Q Consensus       307 s~~~seR~RReKI~erl~~Lq~LVPg~-------~k~DkaSvLdeAI~YlK~Lq~qVk  357 (361)
                      ++..+||+||++||..|..|++|||++       .+..+|+||+.||+|||.||.+|+
T Consensus         5 ~H~~aEr~RR~rIn~~~~~L~~LlP~~~~~~~~~~k~sKa~iL~~Ai~YIk~Lq~~~~   62 (63)
T 1a0a_A            5 SHKHAEQARRNRLAVALHELASLIPAEWKQQNVSAAPSKATTVEAACRYIRHLQQNGS   62 (63)
T ss_dssp             GGGGGTHHHHHHHHHHHHHHHHTSCHHHHTSSCCCCSCTTHHHHHHHHHHHHHHTCSC
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHCCCcccccccCCcccHHHHHHHHHHHHHHHHHHhh
Confidence            345689999999999999999999975       355699999999999999998764

>4h10_A ARYL hydrocarbon receptor nuclear translocator-LI 1; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}

Probab=99.16  E-value=9.9e-12  Score=97.55  Aligned_cols=47  Identities=21%  Similarity=0.347  Sum_probs=43.1

Q ss_pred             ccchhhhhHHHHHHHHHHHHhcCCCC----CCCChhhhHHHHHHHHHHHHH
Q 036175          308 ILGNMQSRKDKIHTALRILQGIIPGA----NGKDPLSLLDEAIDYLQSLKL  354 (361)
Q Consensus       308 ~~~seR~RReKI~erl~~Lq~LVPg~----~k~DkaSvLdeAI~YlK~Lq~  354 (361)
                      ..-.||+||+|||+.|..|+.|||.+    .|+|||+||+.||+|||.|+.
T Consensus        13 H~~~ERrRR~rIN~~l~eL~~LvP~~~~~~~KldKasIL~~tV~ylk~l~~   63 (73)
T 4h10_A           13 HSQIEKRRRDKMNSFIDELASLVPTCNAMSRKLDKLTVLRMAVQHMKTLRG   63 (73)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHSHHHHTCSSCCCHHHHHHHHHHHHHHHSC
T ss_pred             cchHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHhc
Confidence            34579999999999999999999986    699999999999999999974

>1an4_A Protein (upstream stimulatory factor); protein-DNA complex, double helix, overhanging base, transcription/DNA complex; HET: DNA; 2.90A {Homo sapiens} SCOP: a.38.1.1

Probab=99.14  E-value=9e-12  Score=94.12  Aligned_cols=50  Identities=30%  Similarity=0.417  Sum_probs=45.3

Q ss_pred             ccchhhhhHHHHHHHHHHHHhcCCCCC------CCChhhhHHHHHHHHHHHHHHHH
Q 036175          308 ILGNMQSRKDKIHTALRILQGIIPGAN------GKDPLSLLDEAIDYLQSLKLKAV  357 (361)
Q Consensus       308 ~~~seR~RReKI~erl~~Lq~LVPg~~------k~DkaSvLdeAI~YlK~Lq~qVk  357 (361)
                      +...||+||++||+.|..|+.|||++.      ++||++||..||+||+.||.+.+
T Consensus         9 H~~~Er~RR~~in~~~~~L~~lvP~~~~~~~~~k~~Ka~IL~~ai~YI~~Lq~~~~   64 (65)
T 1an4_A            9 HNEVERRRRDKINNWIVQLSKIIPDSSMESTKSGQSKGGILSKASDYIQELRQSNH   64 (65)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHHHSCCCCCCSSTTCCCTTTTTTTTHHHHHHHHTTTC
T ss_pred             hchHHHHHHHHHHHHHHHHHHHCcCcccccccCCCCHHHHHHHHHHHHHHHHHHhc
Confidence            345799999999999999999999986      67999999999999999998753

>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B

Probab=99.03  E-value=3.1e-10  Score=89.39  Aligned_cols=51  Identities=22%  Similarity=0.371  Sum_probs=46.9

Q ss_pred             cchhhhhHHHHHHHHHHHHhcCCCC--CCCChhhhHHHHHHHHHHHHHHHHHh
Q 036175          309 LGNMQSRKDKIHTALRILQGIIPGA--NGKDPLSLLDEAIDYLQSLKLKAVAL  359 (361)
Q Consensus       309 ~~seR~RReKI~erl~~Lq~LVPg~--~k~DkaSvLdeAI~YlK~Lq~qVk~L  359 (361)
                      ...||+||++||+.|..|+.+||..  .|++|++||..||+||+.|+.+++.|
T Consensus         7 n~~Er~RR~~in~~f~~Lr~lvP~~~~~k~sK~~iL~~Ai~YI~~L~~~~~~l   59 (83)
T 1nkp_B            7 NALERKRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRKNHTH   59 (83)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTSGGGTTSCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            3469999999999999999999984  78999999999999999999888776

>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1

Probab=99.02  E-value=2.7e-10  Score=89.43  Aligned_cols=52  Identities=21%  Similarity=0.357  Sum_probs=48.1

Q ss_pred             cchhhhhHHHHHHHHHHHHhcCCCC--CCCChhhhHHHHHHHHHHHHHHHHHhC
Q 036175          309 LGNMQSRKDKIHTALRILQGIIPGA--NGKDPLSLLDEAIDYLQSLKLKAVALG  360 (361)
Q Consensus       309 ~~seR~RReKI~erl~~Lq~LVPg~--~k~DkaSvLdeAI~YlK~Lq~qVk~Lg  360 (361)
                      ...||+||.+|++.|..|+.+||..  .|++|++||..||+||+.|+.+++.|.
T Consensus        17 n~~Er~RR~~in~~f~~Lr~lvP~~~~~k~sK~~iL~~Ai~YI~~L~~~~~~L~   70 (80)
T 1hlo_A           17 NALERKRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRKNHTHQ   70 (80)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHSGGGTTSCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHCcCCCCCCccHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4579999999999999999999986  589999999999999999999999873

>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1

Probab=99.00  E-value=4.2e-10  Score=90.59  Aligned_cols=51  Identities=18%  Similarity=0.278  Sum_probs=46.6

Q ss_pred             cchhhhhHHHHHHHHHHHHhcCCCC---CCCChhhhHHHHHHHHHHHHHHHHHh
Q 036175          309 LGNMQSRKDKIHTALRILQGIIPGA---NGKDPLSLLDEAIDYLQSLKLKAVAL  359 (361)
Q Consensus       309 ~~seR~RReKI~erl~~Lq~LVPg~---~k~DkaSvLdeAI~YlK~Lq~qVk~L  359 (361)
                      ...||+||++|++.|..|+.+||+.   .|++|++||..||+||++|+.+.+.|
T Consensus        11 n~~ER~RR~~ln~~f~~Lr~~vP~~~~~~K~sK~~iL~~A~~YI~~L~~~~~~l   64 (88)
T 1nkp_A           11 NVLERQRRNELKRSFFALRDQIPELENNEKAPKVVILKKATAYILSVQAEEQKL   64 (88)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCGGGTTCTTCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            3469999999999999999999985   58999999999999999999987764

>3u5v_A Protein MAX, transcription factor E2-alpha chimer; basic helix-loop-helix (BHLH); 1.70A {Mus musculus} PDB: 2ql2_A*

Probab=98.89  E-value=1.2e-09  Score=86.23  Aligned_cols=52  Identities=17%  Similarity=0.218  Sum_probs=46.3

Q ss_pred             cchhhhhHHHHHHHHHHHHhcCCC---CCCC-ChhhhHHHHHHHHHHHHHHHHHhC
Q 036175          309 LGNMQSRKDKIHTALRILQGIIPG---ANGK-DPLSLLDEAIDYLQSLKLKAVALG  360 (361)
Q Consensus       309 ~~seR~RReKI~erl~~Lq~LVPg---~~k~-DkaSvLdeAI~YlK~Lq~qVk~Lg  360 (361)
                      ...||+||++||+.|..|+.+||.   +.|. .|+.||..||+||++||.+++++.
T Consensus        10 N~~ER~Rr~~IN~~f~~Lr~~vP~~~~~~K~~sK~~IL~~AieYI~~Lq~~l~e~~   65 (76)
T 3u5v_A           10 NALERKRRRDINEAFRELGRMCQMHLKSDKAQTKLLILQQAVQVILGLEQQVRERN   65 (76)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred             hHHHhhhHHHHHHHHHHHHHHcCCCCCccccccHHHHHHHHHHHHHHHHHHHHHHh
Confidence            346999999999999999999995   3455 688999999999999999999985

>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1

Probab=98.67  E-value=3.5e-08  Score=78.29  Aligned_cols=51  Identities=22%  Similarity=0.271  Sum_probs=46.2

Q ss_pred             cchhhhhHHHHHHHHHHHHhcCCCC---CCCChhhhHHHHHHHHHHHHHHHHHh
Q 036175          309 LGNMQSRKDKIHTALRILQGIIPGA---NGKDPLSLLDEAIDYLQSLKLKAVAL  359 (361)
Q Consensus       309 ~~seR~RReKI~erl~~Lq~LVPg~---~k~DkaSvLdeAI~YlK~Lq~qVk~L  359 (361)
                      ...||+||..|++.|..|+.+||.+   .|..+++||..||+||+.|+.+.+.|
T Consensus         6 N~~ER~RR~~lk~~f~~Lr~~vP~~~~~~k~sk~~iL~kA~~yI~~L~~~~~~l   59 (80)
T 1nlw_A            6 NEMEKNRRAHLRLSLEKLKGLVPLGPDSSRHTTLSLLTKAKLHIKKLEDSDRKA   59 (80)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHSSCCCSSSCCCTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            3469999999999999999999965   57889999999999999999998765

>4f3l_A Mclock, circadian locomoter output cycles protein kaput; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}

Probab=98.55  E-value=7e-08  Score=91.41  Aligned_cols=48  Identities=23%  Similarity=0.430  Sum_probs=42.5

Q ss_pred             cchhhhhHHHHHHHHHHHHhcCC-CCCCCChhhhHHHHHHHHHHHHHHH
Q 036175          309 LGNMQSRKDKIHTALRILQGIIP-GANGKDPLSLLDEAIDYLQSLKLKA  356 (361)
Q Consensus       309 ~~seR~RReKI~erl~~Lq~LVP-g~~k~DkaSvLdeAI~YlK~Lq~qV  356 (361)
                      +-.||+||+|||+.|..|++||| +..|+||++||..||.|||.|+...
T Consensus        17 ~~~e~~rr~~~n~~~~~l~~~~p~~~~~~dk~~il~~~~~~~~~~~~~~   65 (361)
T 4f3l_A           17 NKSEKKRRDQFNVLIKELGSMLPGNARKMDKSTVLQKSIDFLRKHKETT   65 (361)
T ss_dssp             --CHHHHHHHHHHHHHHHHHTCCSSSCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHHHHHHHhhc
Confidence            34699999999999999999999 4569999999999999999998753

>4f3l_B BMAL1B; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}

Probab=98.37  E-value=1.9e-07  Score=89.79  Aligned_cols=47  Identities=21%  Similarity=0.335  Sum_probs=43.3

Q ss_pred             ccchhhhhHHHHHHHHHHHHhcCC----CCCCCChhhhHHHHHHHHHHHHH
Q 036175          308 ILGNMQSRKDKIHTALRILQGIIP----GANGKDPLSLLDEAIDYLQSLKL  354 (361)
Q Consensus       308 ~~~seR~RReKI~erl~~Lq~LVP----g~~k~DkaSvLdeAI~YlK~Lq~  354 (361)
                      .+.+||+||+|||+.|..|+.|||    ...|+||++||..||.|||.||.
T Consensus        17 ~~~~ek~rR~~~n~~~~~L~~l~p~~~~~~~k~dk~~il~~~~~~l~~~~~   67 (387)
T 4f3l_B           17 HSQIEKRRRDKMNSFIDELASLVPTCNAMSRKLDKLTVLRMAVQHMKTLRG   67 (387)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHCHHHHHCSSCCCHHHHHHHHHHHHHHHHC
T ss_pred             ccchhhcchHHHHHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHHHhhc
Confidence            445799999999999999999999    67899999999999999999984

>1mdy_A Protein (MYOD BHLH domain); protein-DNA complex, transcription/DNA complex; HET: DNA; 2.80A {Mus musculus} SCOP: a.38.1.1 PDB: 1mdy_B*

Probab=98.31  E-value=5.7e-07  Score=69.66  Aligned_cols=48  Identities=19%  Similarity=0.258  Sum_probs=43.4

Q ss_pred             chhhhhHHHHHHHHHHHHhcCCCC--CCCChhhhHHHHHHHHHHHHHHHH
Q 036175          310 GNMQSRKDKIHTALRILQGIIPGA--NGKDPLSLLDEAIDYLQSLKLKAV  357 (361)
Q Consensus       310 ~seR~RReKI~erl~~Lq~LVPg~--~k~DkaSvLdeAI~YlK~Lq~qVk  357 (361)
                      ..||+|+..||+.|..|+.+||..  .|+.|+.+|..||+|+++|+..++
T Consensus        18 ~rER~R~~~iN~af~~LR~~iP~~~~~KlSKi~tLr~Ai~YI~~L~~~L~   67 (68)
T 1mdy_A           18 MRERRRLSKVNEAFETLKRSTSSNPNQRLPKVEILRNAIRYIEGLQALLR   67 (68)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTSCSCTTSCCCHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHHHc
Confidence            468999999999999999999974  588999999999999999997653

>2ql2_B Neurod1, neurogenic differentiation factor 1; basic-helix-loop-helix; HET: DNA; 2.50A {Mus musculus}

Probab=98.30  E-value=9.2e-07  Score=66.84  Aligned_cols=48  Identities=19%  Similarity=0.232  Sum_probs=43.5

Q ss_pred             chhhhhHHHHHHHHHHHHhcCCCC---CCCChhhhHHHHHHHHHHHHHHHH
Q 036175          310 GNMQSRKDKIHTALRILQGIIPGA---NGKDPLSLLDEAIDYLQSLKLKAV  357 (361)
Q Consensus       310 ~seR~RReKI~erl~~Lq~LVPg~---~k~DkaSvLdeAI~YlK~Lq~qVk  357 (361)
                      ..||+|+..||+.|..|+.+||..   .|+.|+.+|..||+|+++|+..++
T Consensus         8 ~rER~R~~~iN~af~~LR~~lP~~~~~~klSKi~tLr~Ai~YI~~L~~~L~   58 (60)
T 2ql2_B            8 ARERNRMHGLNAALDNLRKVVPCYSKTQKLSKIETLRLAKNYIWALSEILR   58 (60)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTSSSCCSSSCCCHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHccCCCCcCcCCHHHHHHHHHHHHHHHHHHHh
Confidence            458999999999999999999974   478999999999999999998764

>2lfh_A DNA-binding protein inhibitor ID-3; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=97.94  E-value=7.8e-06  Score=63.90  Aligned_cols=46  Identities=22%  Similarity=0.418  Sum_probs=41.4

Q ss_pred             cchhhhhHHHHHHHHHHHHhcCCCC---CCCChhhhHHHHHHHHHHHHH
Q 036175          309 LGNMQSRKDKIHTALRILQGIIPGA---NGKDPLSLLDEAIDYLQSLKL  354 (361)
Q Consensus       309 ~~seR~RReKI~erl~~Lq~LVPg~---~k~DkaSvLdeAI~YlK~Lq~  354 (361)
                      ...||+|...||+.|..||.+||..   .|+.|+.+|.-||+||+.||.
T Consensus        19 ~erER~Rm~~lN~aF~~LR~~VP~~p~~kKLSKiEtLr~Ai~YI~~Lq~   67 (68)
T 2lfh_A           19 AEEPLSLLDDMNHCYSRLRELVPGVPRGTQLSQVEILQRVIDYILDLQV   67 (68)
T ss_dssp             BCCCSCSSSHHHHHHHHHHHHCCCCCTTCCCCHHHHHHHHHHHHHHHHC
T ss_pred             cHHHHHHHHHHHHHHHHHHHHCCCCCCCCCccHHHHHHHHHHHHHHHHc
Confidence            3468999999999999999999975   578999999999999999983

>4ath_A MITF, microphthalmia-associated transcription factor; DNA binding protein, melanoma; HET: MSE; 1.95A {Mus musculus}

Probab=97.73  E-value=4.1e-05  Score=61.83  Aligned_cols=44  Identities=20%  Similarity=0.381  Sum_probs=38.8

Q ss_pred             HHHHHHHHHHHHhcCCCCC----CCChhhhHHHHHHHHHHHHHHHHHh
Q 036175          316 KDKIHTALRILQGIIPGAN----GKDPLSLLDEAIDYLQSLKLKAVAL  359 (361)
Q Consensus       316 ReKI~erl~~Lq~LVPg~~----k~DkaSvLdeAI~YlK~Lq~qVk~L  359 (361)
                      |..||+++..|..|||...    +.+|.+||..||+|++.||.+++.+
T Consensus         4 R~nIN~~I~EL~~LiP~~~~~~~k~nKg~IL~ksvdYI~~Lq~e~~r~   51 (83)
T 4ath_A            4 RFNINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKLQREQQRA   51 (83)
T ss_dssp             HHHHHHHHHHHHHHSCCCCCTTCCCSHHHHHHHHHHHHHHHHHTHHHH
T ss_pred             hhhHHHhhhhhhccCCCCCCcccCcchHHHHHHHHHHHHHHHHHHHHH
Confidence            7899999999999999753    6899999999999999998866544

>4aya_A DNA-binding protein inhibitor ID-2; cell cycle; 2.10A {Homo sapiens}

Probab=96.91  E-value=0.0016  Score=53.93  Aligned_cols=48  Identities=17%  Similarity=0.325  Sum_probs=42.1

Q ss_pred             hhhhhHHHHHHHHHHHHhcCCCC---CCCChhhhHHHHHHHHHHHHHHHHH
Q 036175          311 NMQSRKDKIHTALRILQGIIPGA---NGKDPLSLLDEAIDYLQSLKLKAVA  358 (361)
Q Consensus       311 seR~RReKI~erl~~Lq~LVPg~---~k~DkaSvLdeAI~YlK~Lq~qVk~  358 (361)
                      .+|.|-..||+.|..||.+||..   .|+-|+.+|.-||+|++.|+.-++.
T Consensus        32 ~~r~Rm~~lN~AF~~LR~~vP~~p~~kKLSKIETLRlAi~YI~~Lq~~L~~   82 (97)
T 4aya_A           32 DPMSLLYNMNDCYSKLKELVPSIPQNKKVSKMEILQHVIDYILDLQIALDS   82 (97)
T ss_dssp             CHHHHHHHHHHHHHHHHHHCTTSCSSSCCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred             cHHHHHHHHHHHHHHHHHHCCCCCCCCcccHHHHHHHHHHHHHHHHHHHhc
Confidence            35778888999999999999964   4789999999999999999987764

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	361
d1uklc_	61	a.38.1.1 (C:) SREBP-2 {Human (Homo sapiens) [TaxId	1e-04
d1an4a_	65	a.38.1.1 (A:) Usf B/HLH domain {Human (Homo sapien	8e-04
d1a0aa_	63	a.38.1.1 (A:) Pho4 B/HLH domain {Baker's yeast (Sa	0.002
d1mdya_	68	a.38.1.1 (A:) Myod B/HLH domain {Mouse (Mus muscul	0.004

>d1uklc_ a.38.1.1 (C:) SREBP-2 {Human (Homo sapiens) [TaxId: 9606]} Length = 61

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: SREBP-2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.4 bits (87), Expect = 1e-04
 Identities = 11/44 (25%), Positives = 22/44 (50%), Gaps = 1/44 (2%)

Query: 317 DKIHTALRILQGIIPGANGK-DPLSLLDEAIDYLQSLKLKAVAL 359
             I+  +  L+ ++ G + K     +L +AIDY++ L+     L
Sbjct: 2   SSINDKIIELKDLVMGTDAKMHKSGVLRKAIDYIKYLQQVNHKL 45

>d1an4a_ a.38.1.1 (A:) Usf B/HLH domain {Human (Homo sapiens) [TaxId: 9606]} Length = 65

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Usf B/HLH domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.1 bits (81), Expect = 8e-04
 Identities = 14/47 (29%), Positives = 25/47 (53%), Gaps = 6/47 (12%)

Query: 313 QSRKDKIHTALRILQGIIPGANGKDP------LSLLDEAIDYLQSLK 353
           + R+DKI+  +  L  IIP ++ +          +L +A DY+Q L+
Sbjct: 14  RRRRDKINNWIVQLSKIIPDSSMESTKSGQSKGGILSKASDYIQELR 60

>d1a0aa_ a.38.1.1 (A:) Pho4 B/HLH domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 63

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Pho4 B/HLH domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 34.1 bits (78), Expect = 0.002
 Identities = 9/46 (19%), Positives = 21/46 (45%), Gaps = 7/46 (15%)

Query: 315 RKDKIHTALRILQGIIPGANGKDP-------LSLLDEAIDYLQSLK 353
           R++++  AL  L  +IP    +          + ++ A  Y++ L+
Sbjct: 13  RRNRLAVALHELASLIPAEWKQQNVSAAPSKATTVEAACRYIRHLQ 58

>d1mdya_ a.38.1.1 (A:) Myod B/HLH domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 68

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Myod B/HLH domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 33.7 bits (77), Expect = 0.004
 Identities = 9/43 (20%), Positives = 19/43 (44%), Gaps = 2/43 (4%)

Query: 313 QSRKDKIHTALRILQGIIPGANGKDP--LSLLDEAIDYLQSLK 353
           + R  K++ A   L+        +    + +L  AI Y++ L+
Sbjct: 21  RRRLSKVNEAFETLKRSTSSNPNQRLPKVEILRNAIRYIEGLQ 63

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	361
d1uklc_	61	SREBP-2 {Human (Homo sapiens) [TaxId: 9606]}	99.2
d1mdya_	68	Myod B/HLH domain {Mouse (Mus musculus) [TaxId: 10	99.13
d1a0aa_	63	Pho4 B/HLH domain {Baker's yeast (Saccharomyces ce	99.12
d1am9a_	80	SREBP-1a {Human (Homo sapiens) [TaxId: 9606]}	99.1
d1nlwa_	79	Mad protein {Human (Homo sapiens) [TaxId: 9606]}	99.04
d1nkpb_	83	Max protein {Human (Homo sapiens) [TaxId: 9606]}	98.99
d1nkpa_	88	Myc proto-oncogene protein {Human (Homo sapiens) [	98.97
d1an4a_	65	Usf B/HLH domain {Human (Homo sapiens) [TaxId: 960	98.87

>d1uklc_ a.38.1.1 (C:) SREBP-2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: SREBP-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.20  E-value=2.8e-12  Score=94.81  Aligned_cols=45  Identities=22%  Similarity=0.375  Sum_probs=42.0

Q ss_pred             HHHHHHHHHHHHhcCCCCC-CCChhhhHHHHHHHHHHHHHHHHHhC
Q 036175          316 KDKIHTALRILQGIIPGAN-GKDPLSLLDEAIDYLQSLKLKAVALG  360 (361)
Q Consensus       316 ReKI~erl~~Lq~LVPg~~-k~DkaSvLdeAI~YlK~Lq~qVk~Lg  360 (361)
                      |++|+++|..|+.|||++. |+|||+||.+||+|||+||.+++.|.
T Consensus         1 R~~in~~f~~L~~lvP~~~~K~~Ka~iL~~Ai~YI~~Lq~~~~~L~   46 (61)
T d1uklc_           1 RSSINDKIIELKDLVMGTDAKMHKSGVLRKAIDYIKYLQQVNHKLR   46 (61)
T ss_dssp             CCCHHHHHHHHHHHHSCSSCCCCTTTHHHHHHHHHHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6789999999999999975 89999999999999999999999873

>d1mdya_ a.38.1.1 (A:) Myod B/HLH domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Myod B/HLH domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.13  E-value=1.6e-11  Score=92.63  Aligned_cols=49  Identities=18%  Similarity=0.244  Sum_probs=44.9

Q ss_pred             cchhhhhHHHHHHHHHHHHhcCCCC--CCCChhhhHHHHHHHHHHHHHHHH
Q 036175          309 LGNMQSRKDKIHTALRILQGIIPGA--NGKDPLSLLDEAIDYLQSLKLKAV  357 (361)
Q Consensus       309 ~~seR~RReKI~erl~~Lq~LVPg~--~k~DkaSvLdeAI~YlK~Lq~qVk  357 (361)
                      ...||+||++||+.|..|+.|||+.  .++||++||..||+||++||.+|+
T Consensus        17 n~~Er~Rr~~in~~~~~L~~llP~~~~~k~sK~~iL~~Ai~YI~~Lq~~l~   67 (68)
T d1mdya_          17 TMRERRRLSKVNEAFETLKRSTSSNPNQRLPKVEILRNAIRYIEGLQALLR   67 (68)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTSCSCTTSCCCHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHhh
Confidence            4569999999999999999999995  478999999999999999998875

>d1a0aa_ a.38.1.1 (A:) Pho4 B/HLH domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Pho4 B/HLH domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.12  E-value=1.9e-11  Score=90.55  Aligned_cols=50  Identities=20%  Similarity=0.366  Sum_probs=44.8

Q ss_pred             ccchhhhhHHHHHHHHHHHHhcCCC-------CCCCChhhhHHHHHHHHHHHHHHHH
Q 036175          308 ILGNMQSRKDKIHTALRILQGIIPG-------ANGKDPLSLLDEAIDYLQSLKLKAV  357 (361)
Q Consensus       308 ~~~seR~RReKI~erl~~Lq~LVPg-------~~k~DkaSvLdeAI~YlK~Lq~qVk  357 (361)
                      +...||+||++||+.|..|+.|||+       +.|++|++||+.||+||+.||.+|.
T Consensus         6 H~~~Er~RR~~in~~~~~L~~llP~~~~~~~~~~k~sKa~iL~~Av~yI~~Lq~~v~   62 (63)
T d1a0aa_           6 HKHAEQARRNRLAVALHELASLIPAEWKQQNVSAAPSKATTVEAACRYIRHLQQNGS   62 (63)
T ss_dssp             GGGGTHHHHHHHHHHHHHHHHTSCHHHHTSSCCCCSCTTHHHHHHHHHHHHHHTCSC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHCCCcccccCCcccccHHHHHHHHHHHHHHHHHhhc
Confidence            3457999999999999999999994       4688999999999999999998763

>d1am9a_ a.38.1.1 (A:) SREBP-1a {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: SREBP-1a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.10  E-value=2.9e-11  Score=93.10  Aligned_cols=52  Identities=19%  Similarity=0.281  Sum_probs=48.1

Q ss_pred             ccchhhhhHHHHHHHHHHHHhcCCCCC-CCChhhhHHHHHHHHHHHHHHHHHh
Q 036175          308 ILGNMQSRKDKIHTALRILQGIIPGAN-GKDPLSLLDEAIDYLQSLKLKAVAL  359 (361)
Q Consensus       308 ~~~seR~RReKI~erl~~Lq~LVPg~~-k~DkaSvLdeAI~YlK~Lq~qVk~L  359 (361)
                      +...||+||++|++.|..|+.|||+.. ++|+++||..||+||+.|+.+++.|
T Consensus        10 H~~~Er~RR~~in~~~~~L~~llP~~~~k~~K~~iL~~a~~yI~~L~~~~~~L   62 (80)
T d1am9a_          10 HNAIEKRYRSSINDKIIELKDLVVGTEAKLNKSAVLRKAIDYIRFLQHSNQKL   62 (80)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            445799999999999999999999965 7899999999999999999999876

>d1nlwa_ a.38.1.1 (A:) Mad protein {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Mad protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.04  E-value=1.6e-10  Score=88.25  Aligned_cols=51  Identities=22%  Similarity=0.271  Sum_probs=46.6

Q ss_pred             cchhhhhHHHHHHHHHHHHhcCCCC---CCCChhhhHHHHHHHHHHHHHHHHHh
Q 036175          309 LGNMQSRKDKIHTALRILQGIIPGA---NGKDPLSLLDEAIDYLQSLKLKAVAL  359 (361)
Q Consensus       309 ~~seR~RReKI~erl~~Lq~LVPg~---~k~DkaSvLdeAI~YlK~Lq~qVk~L  359 (361)
                      ...||+||++|++.|..|+++||++   .+.++++||..||+||+.|+.+++.|
T Consensus         6 n~~Er~RR~~in~~f~~L~~llP~~~~~~k~sK~~iL~~A~~yI~~L~~~~~~l   59 (79)
T d1nlwa_           6 NEMEKNRRAHLRLSLEKLKGLVPLGPDSSRHTTLSLLTKAKLHIKKLEDSDRKA   59 (79)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHSSCCCSSSCCCTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            3579999999999999999999975   37899999999999999999998876

>d1nkpb_ a.38.1.1 (B:) Max protein {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Max protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.99  E-value=2.8e-10  Score=87.62  Aligned_cols=51  Identities=22%  Similarity=0.371  Sum_probs=46.6

Q ss_pred             cchhhhhHHHHHHHHHHHHhcCCCC--CCCChhhhHHHHHHHHHHHHHHHHHh
Q 036175          309 LGNMQSRKDKIHTALRILQGIIPGA--NGKDPLSLLDEAIDYLQSLKLKAVAL  359 (361)
Q Consensus       309 ~~seR~RReKI~erl~~Lq~LVPg~--~k~DkaSvLdeAI~YlK~Lq~qVk~L  359 (361)
                      ...||+||++|++.|..|+++||+.  .+++|++||..||+||++|+.+++.|
T Consensus         7 n~~Er~RR~~in~~f~~L~~llP~~~~~k~sK~~iL~~A~~yI~~L~~~~~~l   59 (83)
T d1nkpb_           7 NALERKRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRKNHTH   59 (83)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTSGGGTTSCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            3579999999999999999999974  68899999999999999999988765

>d1nkpa_ a.38.1.1 (A:) Myc proto-oncogene protein {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Myc proto-oncogene protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.97  E-value=2.8e-10  Score=88.50  Aligned_cols=51  Identities=18%  Similarity=0.278  Sum_probs=46.6

Q ss_pred             cchhhhhHHHHHHHHHHHHhcCCCC---CCCChhhhHHHHHHHHHHHHHHHHHh
Q 036175          309 LGNMQSRKDKIHTALRILQGIIPGA---NGKDPLSLLDEAIDYLQSLKLKAVAL  359 (361)
Q Consensus       309 ~~seR~RReKI~erl~~Lq~LVPg~---~k~DkaSvLdeAI~YlK~Lq~qVk~L  359 (361)
                      ...||+||++|++.|..|+.+||+.   .++++++||..||+||+.|+.+++.|
T Consensus        11 n~~Er~RR~~in~~f~~Lr~llP~~~~~~k~sK~~iL~~A~~yI~~L~~~~~~l   64 (88)
T d1nkpa_          11 NVLERQRRNELKRSFFALRDQIPELENNEKAPKVVILKKATAYILSVQAEEQKL   64 (88)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCGGGTTCTTCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCCCCCCccCHHHHHHHHHHHHHHHHHHHHHH
Confidence            4579999999999999999999975   46899999999999999999998876

>d1an4a_ a.38.1.1 (A:) Usf B/HLH domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Usf B/HLH domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.87  E-value=2.9e-10  Score=84.52  Aligned_cols=49  Identities=31%  Similarity=0.439  Sum_probs=43.8

Q ss_pred             ccchhhhhHHHHHHHHHHHHhcCCCCC------CCChhhhHHHHHHHHHHHHHHH
Q 036175          308 ILGNMQSRKDKIHTALRILQGIIPGAN------GKDPLSLLDEAIDYLQSLKLKA  356 (361)
Q Consensus       308 ~~~seR~RReKI~erl~~Lq~LVPg~~------k~DkaSvLdeAI~YlK~Lq~qV  356 (361)
                      ....||+||++|++.|..|+.|||...      +++|++||..||+||+.||.+.
T Consensus         9 H~~~Er~RR~~in~~f~~L~~lvP~~~~~~~~~k~sK~~iL~~av~yI~~Lq~~~   63 (65)
T d1an4a_           9 HNEVERRRRDKINNWIVQLSKIIPDSSMESTKSGQSKGGILSKASDYIQELRQSN   63 (65)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHHHSCCCCCCSSTTCCCTTTTTTTTHHHHHHHHTTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcccccccCCCCCCCHHHHHHHHHHHHHHHHHhh
Confidence            445799999999999999999999653      8899999999999999999753