Citrus Sinensis ID: 036189

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-
Protein Sequence
MEENEIIQNSAHRCPSKVYPLTTGDISQLPPSRPPHYQHFQIKKLPKLIIITLLVVAASISLTALICILMYFTLGPKLPSLHLDTFSVSNFTIGSTNLIAKWDFNLTFKNPDHLWQIYLDYIECIALNHDHFPIAINHSVSPPFKVKPMKKSTIHVQLATGDSLIFLNHQLLQKINSQRRNGRMVVFGLAVRAKTRFTGVSWLWWTEFANLMYTCLDLKVGFKGLSDSDVGMFIGRLPKQC
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccccccccccEEEHHHHHHHHHHHHHHHHHHHHEEEEEcccccEEEEEEEEEEEEccccccEEEEEEEEEEEEccccEEEEEEccEEEEEEEcccccEEEccccccccccccccEEEEEEEEEEccccccccHHHHHHHHHHHHcccEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEccEEEccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccEEEEEcEEEccEEcccccEEEEEEEEEEEEccccEEEEEEccHHEHHEcccccEEEEEcccccccccccccEEEEEEEEEcccccccccHHHHHHHHHHHccccEEEEEEEEEEEEEEEcccEEEEEEccEEEEEEccEEEEEccccccccccccccccccc
Coil and Loop (DISEMBL)
meeneiiqnsahrcpskvyplttgdisqlppsrpphyqhfqikklPKLIIITLLVVAASISLTALICILMYFtlgpklpslhldtfsvsnftigstnliakwdfnltfknpdHLWQIYLDYIECIalnhdhfpiainhsvsppfkvkpmkkstIHVQLATGDSLIFLNHQLLQKINSQRRNGRMVVFGLAVRAKTRFTGVSWLWWTEFANLMYTCLDLkvgfkglsdsdvgmfigrlpkqc
Flexible Loop (DISEMBL)
meeneiiqnsahrcpskvyPLTTGDISQLPPSRPPHYQHFQIKKLPKLIIITLLVVAASISLTALICILMYFTLGPKLPSLHLDTFSVSNFTIGSTNLIAKWDFNLTFKNPDHLWQIYLDYIECIALNHDHFPIAINHSVSPPFKVKPMKKSTIHVQLATGDSLIFLNHQLLQKinsqrrngRMVVFGLAVRAKTRFTGVSWLWWTEFANLMYTCLDLKVGFKGLSDSDVGMFIGRLPKQC
Low Complexity Region (SEG)
MEENEIIQNSAHRCPSKVYPLTTGDISQLPPSRPPHYQHFQikklpkliiitllVVAASISLTALICILMYFTLGPKLPSLHLDTFSVSNFTIGSTNLIAKWDFNLTFKNPDHLWQIYLDYIECIALNHDHFPIAINHSVSPPFKVKPMKKSTIHVQLATGDSLIFLNHQLLQKINSQRRNGRMVVFGLAVRAKTRFTGVSWLWWTEFANLMYTCLDLKVGFKGLSDSDVGMFIGRLPKQC
Disordered region (IsUnstruct)
***********************************HYQHFQIKKLPKLIIITLLVVAASISLTALICILMYFTLGPKLPSLHLDTFSVSNFTIGSTNLIAKWDFNLTFKNPDHLWQIYLDYIECIALNHDHFPIAINHSVSPPFKVKPMKKSTIHVQLATGDSLIFLNHQLLQKINSQRRNGRMVVFGLAVRAKTRFTGVSWLWWTEFANLMYTCLDLKVGFKGLSDSDVGMFIG******
Disordered Region (DISOPRED)
*********************************************PKLIIITLLVVAASISLTALICILMYFTLGPKLPSLHLDTFSVSNFTIGSTNLIAKWDFNLTFKNPDHLWQIYLDYIECIALNHDHFPIAINHSVSPPFKVKPMKKSTIHVQLATGDS**F************RRNGRMVVFGLAVRAKTRFTGVSWLWWTEFANLMYTCLDLKV**************GRLPKQC
Disordered Region (DISEMBL)
**********AHRCPSKVYPLTTGDISQLPPSRPPHYQHFQIKKLPKLIIITLLVVAASISLTALICILMYFTLGPKLPSLHLDTFSVSNFTIGSTNLIAKWDFNLTFKNPDHLWQIYLDYIECIALNHDHFPIAINHSVSPPFKVKPMKKSTIHVQLATGDSLIFLNHQLLQKINSQRRNGRMVVFGLAVRAKTRFTGVSWLWWTEFANLMYTCLDLKVGFKGLSDSDVGMFIGRLPKQC
Disordered Region (DISPRO)
**ENEIIQNSAHRCPSKVYPLTTGDISQLPPSRPPHYQHFQIKKLPKLIIITLLVVAASISLTALICILMYFTLGPKLPSLHLDTFSVSNFTIGSTNLIAKWDFNLTFKNPDHLWQIYLDYIECIALNHDHFPIAINHSVSPPFKVKPMKKSTIHVQLATGDSLIFLNHQLLQKINSQRRNGRMVVFGLAVRAKTRFTGVSWLWWTEFANLMYTCLDLKVGFKGLSDSDVG**********
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MEENEIIQNSAHRCPSKVYPLTTGDISQLPPSRPPHYQHFQIKKLPKLIIITLLVVAASISLTALICILMYFTLGPKLPSLHLDTFSVSNFTIGSTNLIAKWDFNLTFKNPDHLWQIYLDYIECIALNHDHFPIAINHSVSPPFKVKPMKKSTIHVQLATGDSLIFLNHQLLQKINSQRRNGRMVVFGLAVRAKTRFTGVSWLWWTEFANLMYTCLDLKVGFKGLSDSDVGMFIGRLPKQC
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	241
449534456	241	PREDICTED: uncharacterized protein LOC10	0.809	0.809	0.280	3e-11
224091415	270	predicted protein [Populus trichocarpa]	0.676	0.603	0.268	1e-09
255583572	305	conserved hypothetical protein [Ricinus	0.863	0.681	0.255	1e-09
449530299	248	PREDICTED: uncharacterized protein At1g0	0.692	0.673	0.268	9e-09
449445007	243	PREDICTED: uncharacterized protein At1g0	0.742	0.736	0.263	1e-08
15231224	300	hydroxyproline-rich glycoprotein family	0.829	0.666	0.262	3e-07
297816524	295	hypothetical protein ARALYDRAFT_906612 [	0.846	0.691	0.258	9e-07
224138350	273	predicted protein [Populus trichocarpa]	0.680	0.600	0.251	2e-06
224104737	199	predicted protein [Populus trichocarpa]	0.717	0.869	0.265	4e-05
356550082	271	PREDICTED: uncharacterized protein LOC10	0.622	0.553	0.240	6e-05

>gi|449534456|ref|XP_004174178.1| PREDICTED: uncharacterized protein LOC101227635 [Cucumis sativus]

 Score = 75.1 bits (183), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 60/214 (28%), Positives = 106/214 (49%), Gaps = 19/214 (8%)

Query: 19  YPLTTGDISQLPPS----RPPHYQHFQIKK-LPKLIIITLLVVAASISLTALICILMYFT 73
           YP      +Q PP+     P +Y+   +     + I+  L+++ A ++L+++I    +  
Sbjct: 18  YPPYNTYYAQAPPAAYYNNPQNYRAQTVSAGFLRGIVTALILLVAVMTLSSIIT---WIV 74

Query: 74  LGPKLPSLHLDTFSVSNFTIGSTNLIAKWDFNLTFKNPDHLWQIYLDYIECIALNHDHFP 133
           L P++P   +D+FSVSNF I   N    W+ +LT +NP+H   + ++ I+   +N+    
Sbjct: 75  LRPQIPVFKVDSFSVSNFNISKLNYSGNWNGSLTVENPNHKLTVNIERIQSF-VNYKENT 133

Query: 134 IAINHSVSPPFKVKPMKKSTIHVQLATG---DSLIFLNHQLLQKINSQRRNGRMVVFGLA 190
           +A+  S + PF +   K S + V+L +    D   +L  +  +K+  ++ +G  V F L 
Sbjct: 134 LAM--SYADPFFIDVEKSSQMRVKLTSSSPDDPGNWLETE--EKVGQEKASG-TVSFNLR 188

Query: 191 VRAKTRFTGVSWLWWTEFANLMYTCLDLKVGFKG 224
             A T F   S  WWT    +   C DLK+ F G
Sbjct: 189 FFAWTAFRSGS--WWTRRIVMKVFCEDLKLAFTG 220

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224091415|ref|XP_002309246.1| predicted protein [Populus trichocarpa] gi|222855222|gb|EEE92769.1| predicted protein [Populus trichocarpa]

 Score = 69.3 bits (168), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 47/175 (26%), Positives = 82/175 (46%), Gaps = 12/175 (6%)

Query: 45  LPKLIIITLLVVAASISLTALICILMYFTLGPKLPSLHLDTFSVSNFTIGSTNLIAKWDF 104
           L  +I +TLL+  +SI        +M+  L P+LP  H+D FSVSN         A W+ 
Sbjct: 101 LTTIIFLTLLIFTSSI--------IMWLVLRPQLPVFHVDNFSVSNLNATLPTFTANWEA 152

Query: 105 NLTFKNPDHLWQIYLDYIECIALNHDHFPIAINHSVSPPFKVKPMKKSTIHVQLATGDSL 164
           NLT +NP+   +I    ++      + + +A +   S PF ++      I+ +L+  +  
Sbjct: 153 NLTVRNPNTRLKIEFSELQNFVFYEEDYLLA-SAITSRPFSLETKTSGVINAKLSENNKD 211

Query: 165 IFLNHQLLQKINSQRRNGRMVVFGLAVRAKTRFTGVSWLWWTEFANLMYTCLDLK 219
             + + ++ K+  +R NG  V F   +   T F   S LWW    ++   C D++
Sbjct: 212 NLVENWVVDKLAKERSNGS-VSFNFRMLVWTTFR--SGLWWKRNLSIKVMCEDIQ 263

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255583572|ref|XP_002532542.1| conserved hypothetical protein [Ricinus communis] gi|223527731|gb|EEF29836.1| conserved hypothetical protein [Ricinus communis]

 Score = 69.3 bits (168), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 57/223 (25%), Positives = 94/223 (42%), Gaps = 15/223 (6%)

Query: 27  SQLPPSRPPHYQHFQIKKLPKLIIITLLVVAASISLTALIC---ILMYFTLGPKLPSLHL 83
           +Q PP+   + Q +Q +   ++      ++   + L  L C   I M+  L P +P  H+
Sbjct: 86  AQAPPTAYYNTQMYQTQPECRINGFLRGIIGGLVFLLILTCAISIFMWIILRPVIPVFHV 145

Query: 84  DTFSVSNFTIGST-NLIAKWDFNLTFKNPDHLWQIYLDYIEC-IALNHDHFPIAINHSVS 141
           +  SVSNF + S+    A WD N+T  NP+   ++Y D IE  I  N D     +  S S
Sbjct: 146 NNLSVSNFNLSSSPTFHANWDANITVGNPNTKLKVYFDQIEVFIYYNEDDL---LATSFS 202

Query: 142 PPFKVKPMKKSTIHVQLATGDS---LIFLNHQLLQKINSQRRNGRMVVFGLAVRAKTRFT 198
            PF ++    S +  +L   ++      +   ++ K+   +     V F + +   + F 
Sbjct: 203 NPFFLETGGNSVVQAKLEANNADRKQAGVGSWVVDKMAKDKSTTGNVTFDIRMALWSTFK 262

Query: 199 GVSWLWWTEFANLMYTCLDLKVGFKGLSDSDVGMFIGRLPKQC 241
             S  WW     +   C DL V F G  +S    F     K C
Sbjct: 263 SGS--WWARHVTIRVYCEDLVVSFMG--NSGTANFANGKSKDC 301

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449530299|ref|XP_004172133.1| PREDICTED: uncharacterized protein At1g08160-like [Cucumis sativus]

 Score = 66.6 bits (161), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 47/175 (26%), Positives = 80/175 (45%), Gaps = 8/175 (4%)

Query: 62  LTALICILMYFTLGPKLPSLHLDTFSVSNFTIGSTNLIAKWDFNLTFKNPDHLWQIYLDY 121
           +TA+I  +++  L P+LP   +D+F V+NF+  +  L A W    +  NP+    +  D+
Sbjct: 74  ITAVILFIIWLVLRPQLPEFRVDSFQVTNFSTAAKTLSASWFIGFSVFNPNKKMTVSYDF 133

Query: 122 IECIALNHDHFPIAINHSVSPPFKVKPMKKSTIHVQLATGDSLIFLNHQLLQKINSQRRN 181
           I+     ++ F   +  +  PPF  +   +S ++   +   +  ++    L KIN  RR 
Sbjct: 134 IDSTLFYNNEF---LTDTRVPPFAQEKKTQSVVNASFSALSA--YVEASSLNKINDDRRR 188

Query: 182 GRMVVFGLAVRAKTRFTGVSWLWWTEFANLMYTCLDLKVGFKGLSDSDVGMFIGR 236
           G  + F + + A+  F    W W T    L   C DL V F   + S  G  IG 
Sbjct: 189 G-TIKFNVGISARVGFRA-GW-WRTRRRLLRVLCEDLSVSFSSSNSSGSGKLIGE 240

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449445007|ref|XP_004140265.1| PREDICTED: uncharacterized protein At1g08160-like [Cucumis sativus]

 Score = 66.2 bits (160), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 50/190 (26%), Positives = 87/190 (45%), Gaps = 11/190 (5%)

Query: 47  KLIIITLLVVAASISLTALICILMYFTLGPKLPSLHLDTFSVSNFTIGSTNLIAKWDFNL 106
           + +I  ++VV     +TA+I  +++  L P+LP   +D+F V+NF+  +  L A W    
Sbjct: 62  RALIAGIIVV---FIITAVILFIIWLVLRPQLPEFRVDSFQVTNFSTAAKTLSASWFIGF 118

Query: 107 TFKNPDHLWQIYLDYIECIALNHDHFPIAINHSVSPPFKVKPMKKSTIHVQLATGDSLIF 166
           +  NP+    +  D+I+     ++ F   +  +  PPF  +   +S ++   +   +  +
Sbjct: 119 SVFNPNKKMTVSYDFIDSTLFYNNEF---LTDTRVPPFAQEKKTQSVVNASFSALSA--Y 173

Query: 167 LNHQLLQKINSQRRNGRMVVFGLAVRAKTRFTGVSWLWWTEFANLMYTCLDLKVGFKGLS 226
           +    L KIN  RR G  + F + + A+  F    W W T    L   C DL V F   +
Sbjct: 174 VEASSLNKINDDRRRG-TIKFNVGISARVGFRA-GW-WRTRRRLLRVLCEDLSVSFSSSN 230

Query: 227 DSDVGMFIGR 236
            S  G  IG 
Sbjct: 231 SSGSGKLIGE 240

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15231224|ref|NP_190814.1| hydroxyproline-rich glycoprotein family protein [Arabidopsis thaliana] gi|4886281|emb|CAB43432.1| putative protein [Arabidopsis thaliana] gi|332645427|gb|AEE78948.1| hydroxyproline-rich glycoprotein family protein [Arabidopsis thaliana]

 Score = 61.2 bits (147), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 58/221 (26%), Positives = 91/221 (41%), Gaps = 21/221 (9%)

Query: 27  SQLPPSRPPHYQHFQIKKLPKLIIITLLVVAASISLTALICI---LMYFTLGPKLPSLHL 83
           S  P  + P YQ        + I   L+V      L  L+CI   + +  L P++P   +
Sbjct: 87  SSYPAQQNPVYQRPASSGFVRGIFTGLIV------LVVLLCISTTITWLVLRPQIPLFSV 140

Query: 84  DTFSVSNFTIGSTNLIAKWDFNLTFKNPDHLWQIYLDYIECI-----ALNHDHFPIAINH 138
           + FSVSNF +      A+W  NLT +N +   + Y D I+ +     A+  D F   +  
Sbjct: 141 NNFSVSNFNVTGPVFSAQWTANLTIENQNTKLKGYFDRIQGLVYHQNAVGEDEF---LAT 197

Query: 139 SVSPPFKVKPMKKSTIHVQLATGD-SLIFLNHQLLQKINSQRRNGRMVVFGLAVRAKTRF 197
           +   P  V+  K   I   L  GD     +   ++ ++  +R  G  V F L +     F
Sbjct: 198 AFFQPVFVETKKSVVIGETLTAGDKEQPKVPSWVVDEMKKERETG-TVTFSLRMAVWVTF 256

Query: 198 TGVSWLWWTEFANLMYTCLDLKVGFKGLSDSDVGMFIGRLP 238
               W      + L   C  LKVGF+G+S +   +    LP
Sbjct: 257 KTDGWA--ARESGLKVFCGKLKVGFEGISGNGAVLLPKPLP 295

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297816524|ref|XP_002876145.1| hypothetical protein ARALYDRAFT_906612 [Arabidopsis lyrata subsp. lyrata] gi|297321983|gb|EFH52404.1| hypothetical protein ARALYDRAFT_906612 [Arabidopsis lyrata subsp. lyrata]

 Score = 59.7 bits (143), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 56/217 (25%), Positives = 87/217 (40%), Gaps = 13/217 (5%)

Query: 27  SQLPPSRPPHYQHFQIKKLPKLIIITLLVVAASISLTALICILMYFTLGPKLPSLHLDTF 86
           S  P  + P YQ        + I   L+V+   + ++  I  L+   L P++P   ++ F
Sbjct: 82  SSYPAQQNPVYQRPASSGFVRGIFTGLIVIVVLLCISTTITWLI---LRPRIPLFSVNNF 138

Query: 87  SVSNFTIGSTNLIAKWDFNLTFKNPDHLWQIYLDYIECI-----ALNHDHFPIAINHSVS 141
           SVSNF +      A+W  NLT +N +   + Y D I+ +     A+  D F   +  +  
Sbjct: 139 SVSNFNLTGPVFSAQWTANLTIENQNTKLKGYFDRIQGLIYHQNAVGEDDF---LATAFF 195

Query: 142 PPFKVKPMKKSTIHVQLATGDSLIFLNHQLLQKINSQRRNGRMVVFGLAVRAKTRFTGVS 201
           PP  V+  K   I   L  GD         + +   + R+   V F L +     F    
Sbjct: 196 PPVFVETKKSVVIGETLTAGDKEQPKVPSWVGEEMKKERDTGTVSFNLRMAVWVTFKTDG 255

Query: 202 WLWWTEFANLMYTCLDLKVGFKGLSDSDVGMFIGRLP 238
           W        L   C  LKVGF+G S +   +    LP
Sbjct: 256 WA--ARERGLKVFCGKLKVGFEGNSGNGAVLLPKPLP 290

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224138350|ref|XP_002322792.1| predicted protein [Populus trichocarpa] gi|222867422|gb|EEF04553.1| predicted protein [Populus trichocarpa]

 Score = 58.9 bits (141), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 43/171 (25%), Positives = 80/171 (46%), Gaps = 7/171 (4%)

Query: 68  ILMYFTLGPKLPSLHLDTFSVSNFTIGSTNLIAKWDFNLTFKNPDHLWQIYLDYIEC-IA 126
           ++M   L P+LP  H++ FSV NF        A W+  ++ KNP+   +I    I   + 
Sbjct: 102 LIMLLALRPELPVFHVEDFSVLNFNATMPTFTAIWEAYVSVKNPNTRLKIDFGPIHSHMY 161

Query: 127 LNHDHFPIAINHSVSPPFKVKPMKKSTIHVQLATGDSLIFLNHQLLQKINSQRRNGRMVV 186
            + D+   + N   SP F ++   ++ IH +L+  ++   +  +++ K+  +R NG  V 
Sbjct: 162 YDKDYILASAN---SPKFSMETKTRNVIHARLSANNTDNSVESRVVDKLAKERSNG-AVG 217

Query: 187 FGLAVRAKTRFTGVSWLWWTEFANLMYTCLDLKVGFKGLS-DSDVGMFIGR 236
           F   +   T     SW + +   ++   C D+K+ F G S D ++     R
Sbjct: 218 FHFRMVFSTCSRSGSW-FRSNPRSMEVVCEDIKIAFAGASGDGNIAASADR 267

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224104737|ref|XP_002313548.1| predicted protein [Populus trichocarpa] gi|222849956|gb|EEE87503.1| predicted protein [Populus trichocarpa]

 Score = 54.7 bits (130), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 48/181 (26%), Positives = 84/181 (46%), Gaps = 8/181 (4%)

Query: 47  KLIIITLLVVAASISLTALICILMYFTLGPKLPSLHLDTFSVSNFTIGSTNLIAKWDFNL 106
           KL+ I ++V+ A I L  L  ++ +  + PK     +D+ SV NF + + +L A +D  +
Sbjct: 17  KLVRIIVVVILALIVLLGLAVLITWLIIKPKQLVYRIDSASVHNFNLKNNHLNATFDLLI 76

Query: 107 TFKNPDHLWQIYLDYIECIALNHDHFPIAINHSVSPPFKVKPMKKSTIHVQLATGDSLIF 166
              NP+    +Y D IE +++ +D   IA N     PF       + +   L   D+   
Sbjct: 77  KAHNPNSRISVYYDPIE-VSVAYDGQTIAFN--TLEPFHQPRRNVTRLDATLVARDAA-- 131

Query: 167 LNHQLLQKINSQRRNGRMVVFGLAVRAKTRFTGVSWLWWTEFANLMYTCLDLKVGFKGLS 226
           L+  L + +  Q+R+G +   GL VR K R      ++  +   L  +C  +KV    L 
Sbjct: 132 LSGALSRDLRVQKRSGNI---GLDVRIKARIRFKVGIFKLKHHTLRISCSPVKVQMSSLK 188

Query: 227 D 227
           +
Sbjct: 189 N 189

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356550082|ref|XP_003543419.1| PREDICTED: uncharacterized protein LOC100780672 [Glycine max]

 Score = 53.9 bits (128), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 38/158 (24%), Positives = 72/158 (45%), Gaps = 8/158 (5%)

Query: 64  ALICILMYFTLGPKLPSLHLDTFSVSNFTIGSTNLIAKWDFNLTFKNPDHLWQIYLDYIE 123
            ++ I+ +  L P LP   L + SVSN +  S +L A W  +   +N +    +  + + 
Sbjct: 101 GVVLIITWLVLRPSLPHFTLHSLSVSNLSSTSQSLSATWHLSFLVRNGNKKMTVSYNALR 160

Query: 124 CIALNHDHFPIAINHSVSPPFKVKPMKKSTIHVQLATGDSLIFLNHQLLQKINSQRRNGR 183
                  ++   I+ S   PF+     ++T++  L    +  +L  +L+  +N++ RN  
Sbjct: 161 SSIFYRQNY---ISESQLAPFRQDTRSQTTLNATLTAAGT--YLEPKLIDNLNAE-RNAS 214

Query: 184 MVVFGLAVRAKTRFTGVSWLWWTEFANLMYTCLDLKVG 221
            V+F + V A T F   SW + T    ++  C  + VG
Sbjct: 215 SVLFDVQVVAATSFRSGSWRFRTRVLKVL--CRKVPVG 250

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	241
TAIR|locus:2079974	300	AT3G52460 "AT3G52460" [Arabido	0.717	0.576	0.271	7.4e-08
TAIR|locus:2039632	243	AT2G27260 "AT2G27260" [Arabido	0.717	0.711	0.226	3e-07
TAIR|locus:2195783	224	AT1G61760 "AT1G61760" [Arabido	0.659	0.709	0.232	0.00028

TAIR|locus:2079974 AT3G52460 "AT3G52460" [Arabidopsis thaliana (taxid:3702)]

 Score = 142 (55.0 bits), Expect = 7.4e-08, P = 7.4e-08
 Identities = 51/188 (27%), Positives = 81/188 (43%)

Query:    60 ISLTALICI---LMYFTLGPKLPSLHLDTFSVSNFTIGSTNLIAKWDFNLTFKNPDHLWQ 116
             I L  L+CI   + +  L P++P   ++ FSVSNF +      A+W  NLT +N +   +
Sbjct:   114 IVLVVLLCISTTITWLVLRPQIPLFSVNNFSVSNFNVTGPVFSAQWTANLTIENQNTKLK 173

Query:   117 IYLDYIECI-----ALNHDHFPIAINHSVSPPFKVKPMKKSTIHVQLATGDS-LIFLNHQ 170
              Y D I+ +     A+  D F   +  +   P  V+  K   I   L  GD     +   
Sbjct:   174 GYFDRIQGLVYHQNAVGEDEF---LATAFFQPVFVETKKSVVIGETLTAGDKEQPKVPSW 230

Query:   171 LLQKINSQRRNGRMVVFGLAVRAKTRFTGVSWLWWTEFANLMYTCLDLKVGFKGLSDSDV 230
             ++ ++  +R  G  V F L +     F    W      + L   C  LKVGF+G+S +  
Sbjct:   231 VVDEMKKERETGT-VTFSLRMAVWVTFKTDGWA--ARESGLKVFCGKLKVGFEGISGNGA 287

Query:   231 GMFIGRLP 238
              +    LP
Sbjct:   288 VLLPKPLP 295

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

TAIR|locus:2039632 AT2G27260 "AT2G27260" [Arabidopsis thaliana (taxid:3702)]

 Score = 135 (52.6 bits), Expect = 3.0e-07, P = 3.0e-07
 Identities = 43/190 (22%), Positives = 88/190 (46%)

Query:    55 VVAASISLTALICILMYFTLGPKLPSLHLDTFSVSNFTIGSTNLIAKWDFNLTFKNPDHL 114
             V    + L  LI  + +  + P+LP ++L++ SVSNF + +  +  KWD  L F+NP+  
Sbjct:    65 VFTTFLLLLGLILFIFFLIVRPQLPDVNLNSLSVSNFNVSNNQVSGKWDLQLQFRNPNSK 124

Query:   115 WQIYLDYIECIALNHDHFPIAINHSVSPPFKVKPMKKSTIHVQLATGDSLIFLNHQLLQK 174
               ++ +   C A+ ++   ++++ +   PF      ++ ++  L+   +  +++ +L+  
Sbjct:   125 MSLHYETALC-AMYYNR--VSLSETRLQPFDQGKKDQTVVNATLSVSGT--YVDGRLVDS 179

Query:   175 INSQRRNGRMVVFGLAVRAKTRFTGVSWLWWTEFANLMYT---CLDLKVGFKGLSDSDVG 231
             I  +R     V F L + +   F       +  F    Y    C D+ VG   +S  + G
Sbjct:   180 IGKERSVKGNVEFDLRMISYVTFR------YGAFRRRRYVTVYCDDVAVGVP-VSSGE-G 231

Query:   232 MFIGRLPKQC 241
               +G   K+C
Sbjct:   232 KMVGS-SKRC 240

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0009506 "plasmodesma" evidence=IDA

TAIR|locus:2195783 AT1G61760 "AT1G61760" [Arabidopsis thaliana (taxid:3702)]

 Score = 110 (43.8 bits), Expect = 0.00028, P = 0.00028
 Identities = 40/172 (23%), Positives = 80/172 (46%)

Query:    59 SISLTALICI-----LMYFTLGPKLPSLHLDTFSVSNFTIGSTNLIAKWDFNLTFKNPDH 113
             +I L+ L+C+     +++ +L P  P +H+  FS+S  +       +   F +T  NP+ 
Sbjct:    46 AIFLSLLLCLGIITFILWISLQPHRPRVHIRGFSISGLSRPDGFETSHISFKITAHNPNQ 105

Query:   114 LWQIYLDYIECIALNHDHFPIAINHSVSPPFKVKPMKKSTIHVQLATGDSLIFLNHQLLQ 173
                IY D +E  ++ +    I  +  ++ PF   P  K+T  +  A     + +N     
Sbjct:   106 NVGIYYDSMEG-SVYYKEKRIG-STKLTNPFYQDP--KNTSSIDGALSRPAMAVNKDRWM 161

Query:   174 KINSQRRNGRMVVFGLAVRAKTRFTGVSWLWWTEFANLMYTCLDLKVGFKGL 225
             ++   R  G+ ++F L VR+  RF   +W      ++ MY    +++G+ G+
Sbjct:   162 EMERDRNQGK-IMFRLKVRSMIRFKVYTW---HSKSHKMYASCYIEIGWDGM 209


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.325   0.138   0.441    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      241       228   0.00081  113 3  11 22  0.48    32
                                                     32  0.41    36


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  3
  No. of states in DFA:  608 (65 KB)
  Total size of DFA:  203 KB (2114 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  20.01u 0.08s 20.09t   Elapsed:  00:00:01
  Total cpu time:  20.01u 0.08s 20.09t   Elapsed:  00:00:01
  Start:  Sat May 11 04:14:30 2013   End:  Sat May 11 04:14:31 2013

GO:0003674 "molecular_function" evidence=ND

GO:0005886 "plasma membrane" evidence=ISM

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: fgenesh4_pg.C_LG_VI001033 hypothetical protein (270 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	241
PLN03160	219	uncharacterized protein; Provisional	100.0
PF03168	101	LEA_2: Late embryogenesis abundant protein; InterP	99.41
smart00769	100	WHy Water Stress and Hypersensitive response.	98.33
PF07092	238	DUF1356: Protein of unknown function (DUF1356); In	97.49
PF12751	387	Vac7: Vacuolar segregation subunit 7; InterPro: IP	97.36
COG5608	161	LEA14-like dessication related protein [Defense me	95.37
PLN03160	219	uncharacterized protein; Provisional	91.17
TIGR02588	122	conserved hypothetical protein TIGR02588. The func	87.79
PF09307	114	MHC2-interact: CLIP, MHC2 interacting; InterPro: I	80.18

>PLN03160 uncharacterized protein; Provisional

Probab=100.00  E-value=2.1e-37  Score=265.86  Aligned_cols=199  Identities=13%  Similarity=0.139  Sum_probs=159.6

Q ss_pred             CccccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCchhhhHHHHHHHHHHHHHHHHHhheeeEEecCCCCE
Q 036189            1 MEENEIIQNSAHRCPSKVYPLTTGDISQLPPSRPPHYQHFQIKKLPKLIIITLLVVAASISLTALICILMYFTLGPKLPS   80 (241)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~p~~~~~~~~~~~rc~~~~~~~~~~~i~llgl~~lil~lv~rPk~P~   80 (241)
                      |-|+||+||+|-.+++.     .+|.++.    .+++++.+|++|++||+|++.++   ++++++++.++|++||||+|+
T Consensus         1 ~~~~~~~~p~a~~~~~~-----~~d~~~~----~~~~~~~~r~~~~~c~~~~~a~~---l~l~~v~~~l~~~vfrPk~P~   68 (219)
T PLN03160          1 MAETEQVRPLAPAAFRL-----RSDEEEA----TNHLKKTRRRNCIKCCGCITATL---LILATTILVLVFTVFRVKDPV   68 (219)
T ss_pred             CCccccCCCCCCCcccc-----cCchhhc----CcchhccccccceEEHHHHHHHH---HHHHHHHHheeeEEEEccCCe
Confidence            89999999999988872     1222221    12222234555666655444333   355677788889999999999


Q ss_pred             EEEeeEEEeeeecCC-----CceeEEEEEEEEEeCCCCeeEEEEccEEEEEEeCCcccceeeeccCCCceecCCCeEEEE
Q 036189           81 LHLDTFSVSNFTIGS-----TNLIAKWDFNLTFKNPDHLWQIYLDYIECIALNHDHFPIAINHSVSPPFKVKPMKKSTIH  155 (241)
Q Consensus        81 f~V~s~~l~~f~~~~-----~~l~~~~~~~l~v~NPN~k~~i~Y~~~~v~v~Y~g~~~~~lg~~~vp~F~q~~~~tt~v~  155 (241)
                      |+|++++|++|+++.     ..+|++++++++++|||+ ++|+|+++++.++|+|+.   +|++.+|+|+|++++++.++
T Consensus        69 ~~v~~v~l~~~~~~~~~~~~~~~n~tl~~~v~v~NPN~-~~~~Y~~~~~~v~Y~g~~---vG~a~~p~g~~~ar~T~~l~  144 (219)
T PLN03160         69 IKMNGVTVTKLELINNTTLRPGTNITLIADVSVKNPNV-ASFKYSNTTTTIYYGGTV---VGEARTPPGKAKARRTMRMN  144 (219)
T ss_pred             EEEEEEEEeeeeeccCCCCceeEEEEEEEEEEEECCCc-eeEEEcCeEEEEEECCEE---EEEEEcCCcccCCCCeEEEE
Confidence            999999999999864     357888889999999999 899999999999999999   99999999999999999999


Q ss_pred             EEEEeCCceeecCHHHHHHHHHHhhCCceEEEEEEEEEEEEEEEEeceEEEeeeeEEEEecceEEeee
Q 036189          156 VQLATGDSLIFLNHQLLQKINSQRRNGRMVVFGLAVRAKTRFTGVSWLWWTEFANLMYTCLDLKVGFK  223 (241)
Q Consensus       156 v~l~~~~~~~~l~~~~~~~l~~d~~~G~~v~~~v~v~~~vr~kv~~g~~~~~~~~~~v~C~~l~V~~~  223 (241)
                      +++.. .....+..   ..|..|..+|. ++|++++++++++++  |+++++++.++++| +++|++.
T Consensus       145 ~tv~~-~~~~~~~~---~~L~~D~~~G~-v~l~~~~~v~gkVkv--~~i~k~~v~~~v~C-~v~V~~~  204 (219)
T PLN03160        145 VTVDI-IPDKILSV---PGLLTDISSGL-LNMNSYTRIGGKVKI--LKIIKKHVVVKMNC-TMTVNIT  204 (219)
T ss_pred             EEEEE-Eeceeccc---hhHHHHhhCCe-EEEEEEEEEEEEEEE--EEEEEEEEEEEEEe-EEEEECC
Confidence            99765 21122221   46888999999 999999999999999  99999999999999 9999883

>PF03168 LEA_2: Late embryogenesis abundant protein; InterPro: IPR004864 Different types of LEA proteins are expressed at different stages of late embryogenesis in higher plant seed embryos and under conditions of dehydration stress [, ]

Probab=99.41  E-value=2.1e-12  Score=96.59  Aligned_cols=99  Identities=20%  Similarity=0.332  Sum_probs=72.8

Q ss_pred             EEEEeCCCCeeEEEEccEEEEEEeCCcccceee-eccCCCceecCCCeEEEEEEEEeCCceeecCHHHHHHHHHHhhCCc
Q 036189          105 NLTFKNPDHLWQIYLDYIECIALNHDHFPIAIN-HSVSPPFKVKPMKKSTIHVQLATGDSLIFLNHQLLQKINSQRRNGR  183 (241)
Q Consensus       105 ~l~v~NPN~k~~i~Y~~~~v~v~Y~g~~~~~lg-~~~vp~F~q~~~~tt~v~v~l~~~~~~~~l~~~~~~~l~~d~~~G~  183 (241)
                      +|+++|||. ++++|+++++.++|+|+.   +| ....++|+|++++++.+.+.+....      ..+.+.+.++. .|.
T Consensus         1 ~l~v~NPN~-~~i~~~~~~~~v~~~g~~---v~~~~~~~~~~i~~~~~~~v~~~v~~~~------~~l~~~l~~~~-~~~   69 (101)
T PF03168_consen    1 TLSVRNPNS-FGIRYDSIEYDVYYNGQR---VGTGGSLPPFTIPARSSTTVPVPVSVDY------SDLPRLLKDLL-AGR   69 (101)
T ss_dssp             EEEEEESSS-S-EEEEEEEEEEEESSSE---EEEEEECE-EEESSSCEEEEEEEEEEEH------HHHHHHHHHHH-HTT
T ss_pred             CEEEECCCc-eeEEEeCEEEEEEECCEE---EECccccCCeEECCCCcEEEEEEEEEcH------HHHHHHHHhhh-ccc
Confidence            589999999 999999999999999998   99 7789999999999999988877721      22245666666 556


Q ss_pred             eEEEEEEEEEEEEEEE-EeceEEEeeeeEEEEe
Q 036189          184 MVVFGLAVRAKTRFTG-VSWLWWTEFANLMYTC  215 (241)
Q Consensus       184 ~v~~~v~v~~~vr~kv-~~g~~~~~~~~~~v~C  215 (241)
                       ..+++.+++++++++ ..+.+.+.++.++.+|
T Consensus        70 -~~~~v~~~~~g~~~v~~~~~~~~~~v~~~~~~  101 (101)
T PF03168_consen   70 -VPFDVTYRIRGTFKVLGTPIFGSVRVPVSCEC  101 (101)
T ss_dssp             -SCEEEEEEEEEEEE-EE-TTTSCEEEEEEEEE
T ss_pred             -cceEEEEEEEEEEEEcccceeeeEEEeEEeEC
Confidence             677777888888883 2244454555555554

The function of these proteins is unknown. ; PDB: 3BUT_A 1XO8_A 1YYC_A.

>smart00769 WHy Water Stress and Hypersensitive response

Probab=98.33  E-value=1.2e-05  Score=60.63  Aligned_cols=61  Identities=10%  Similarity=0.132  Sum_probs=56.3

Q ss_pred             CceeEEEEEEEEEeCCCCeeEEEEccEEEEEEeCCcccceeeeccCC-CceecCCCeEEEEEEEEe
Q 036189           96 TNLIAKWDFNLTFKNPDHLWQIYLDYIECIALNHDHFPIAINHSVSP-PFKVKPMKKSTIHVQLAT  160 (241)
Q Consensus        96 ~~l~~~~~~~l~v~NPN~k~~i~Y~~~~v~v~Y~g~~~~~lg~~~vp-~F~q~~~~tt~v~v~l~~  160 (241)
                      +.++.++.+++.+.|||. ..+.|+.++..++|+|..   +|++..+ ++..++++++.+.+.+..
T Consensus        11 ~~~~~~~~l~l~v~NPN~-~~l~~~~~~y~l~~~g~~---v~~g~~~~~~~ipa~~~~~v~v~~~~   72 (100)
T smart00769       11 SGLEIEIVLKVKVQNPNP-FPIPVNGLSYDLYLNGVE---LGSGEIPDSGTLPGNGRTVLDVPVTV   72 (100)
T ss_pred             cceEEEEEEEEEEECCCC-CccccccEEEEEEECCEE---EEEEEcCCCcEECCCCcEEEEEEEEe
Confidence            367789999999999998 999999999999999999   9999986 799999999999888877

>PF07092 DUF1356: Protein of unknown function (DUF1356); InterPro: IPR009790 This family consists of several hypothetical mammalian proteins of around 250 residues in length

Probab=97.49  E-value=0.012  Score=51.12  Aligned_cols=83  Identities=11%  Similarity=0.178  Sum_probs=58.5

Q ss_pred             ecCCCCEEEEeeEEEee--eecCCCceeEEEEEEEEEeCCCCeeEEEEccEEEEEEeCCcccceeeeccCCC-ceecCCC
Q 036189           74 LGPKLPSLHLDTFSVSN--FTIGSTNLIAKWDFNLTFKNPDHLWQIYLDYIECIALNHDHFPIAINHSVSPP-FKVKPMK  150 (241)
Q Consensus        74 ~rPk~P~f~V~s~~l~~--f~~~~~~l~~~~~~~l~v~NPN~k~~i~Y~~~~v~v~Y~g~~~~~lg~~~vp~-F~q~~~~  150 (241)
                      +-||.-.++-.++....  |+-+.+.+..+++-.+.++|||- ..+.-.++.+.+.|...-   +|.+.... ...++++
T Consensus        96 LfPRsV~v~~~gv~s~~V~f~~~~~~v~l~itn~lNIsN~NF-y~V~Vt~~s~qv~~~~~V---VG~~~~~~~~~I~Prs  171 (238)
T PF07092_consen   96 LFPRSVTVSPVGVKSVTVSFNPDKSTVQLNITNTLNISNPNF-YPVTVTNLSIQVLYMKTV---VGKGKNSNITVIGPRS  171 (238)
T ss_pred             EeCcEEEEecCcEEEEEEEEeCCCCEEEEEEEEEEEccCCCE-EEEEEEeEEEEEEEEEeE---EeeeEecceEEecccC
Confidence            34664444333322222  33333568889999999999996 999999999999998877   99887654 4677777


Q ss_pred             eEEEEEEEEe
Q 036189          151 KSTIHVQLAT  160 (241)
Q Consensus       151 tt~v~v~l~~  160 (241)
                      .+.+..++..
T Consensus       172 ~~q~~~tV~t  181 (238)
T PF07092_consen  172 SKQVNYTVKT  181 (238)
T ss_pred             CceEEEEeeE
Confidence            7777666555

The function of this family is unknown.

>PF12751 Vac7: Vacuolar segregation subunit 7; InterPro: IPR024260 Vac7 is localised at the vacuole membrane, a location which is consistent with its involvement in vacuole morphology and inheritance []

Probab=97.36  E-value=0.001  Score=61.26  Aligned_cols=73  Identities=14%  Similarity=0.238  Sum_probs=44.8

Q ss_pred             HHHHHHHHHHHHHHhheeeEEecCCCCEEEEeeEEEeeeecCCCceeEEEEEEEEEeCCCCeeEEEEccEEEEEEeCCcc
Q 036189           53 LLVVAASISLTALICILMYFTLGPKLPSLHLDTFSVSNFTIGSTNLIAKWDFNLTFKNPDHLWQIYLDYIECIALNHDHF  132 (241)
Q Consensus        53 ~~~~~~~i~llgl~~lil~lv~rPk~P~f~V~s~~l~~f~~~~~~l~~~~~~~l~v~NPN~k~~i~Y~~~~v~v~Y~g~~  132 (241)
                      ++.+++++++.|++.++|. .-+|   --.|+=..|.+.-.+  .--.-|+++|.+.|||. +.|.-++.++.++-+-..
T Consensus       307 ~~~i~~lL~ig~~~gFv~A-ttKp---L~~v~v~~I~NVlaS--~qELmfdl~V~A~NPn~-~~V~I~d~dldIFAKS~y  379 (387)
T PF12751_consen  307 YLSILLLLVIGFAIGFVFA-TTKP---LTDVQVVSIQNVLAS--EQELMFDLTVEAFNPNW-FTVTIDDMDLDIFAKSRY  379 (387)
T ss_pred             HHHHHHHHHHHHHHHhhhh-cCcc---cccceEEEeeeeeec--cceEEEeeEEEEECCCe-EEEEeccceeeeEecCCc
Confidence            3343333444444554444 3333   333333444443333  34466889999999998 999999999999876554

Vac7 has been shown to function as an upstream regulator of the Fab1 lipid kinase pathway []. The Fab1 lipid pathway is important for correct regulation of membrane trafficking events.

>COG5608 LEA14-like dessication related protein [Defense mechanisms]

Probab=95.37  E-value=1.2  Score=36.21  Aligned_cols=107  Identities=19%  Similarity=0.159  Sum_probs=73.6

Q ss_pred             CCCEEEEeeEEEeeeecCCCceeEEEEEEEEEeCCCCeeEEEEccEEEEEEeCCcccceeeeccC-CCceecCCCeEEEE
Q 036189           77 KLPSLHLDTFSVSNFTIGSTNLIAKWDFNLTFKNPDHLWQIYLDYIECIALNHDHFPIAINHSVS-PPFKVKPMKKSTIH  155 (241)
Q Consensus        77 k~P~f~V~s~~l~~f~~~~~~l~~~~~~~l~v~NPN~k~~i~Y~~~~v~v~Y~g~~~~~lg~~~v-p~F~q~~~~tt~v~  155 (241)
                      +.|...--.+..-...    ...-.+-.++.++|||. ..+--..++..+|-+|-.   +|.+.. .++..++++...+.
T Consensus        31 ~~p~ve~~ka~wGkvt----~s~~EiV~t~KiyNPN~-fPipVtgl~y~vymN~Ik---i~eG~~~k~~~v~p~S~~tvd  102 (161)
T COG5608          31 KKPGVESMKAKWGKVT----NSETEIVGTLKIYNPNP-FPIPVTGLQYAVYMNDIK---IGEGEILKGTTVPPNSRETVD  102 (161)
T ss_pred             CCCCceEEEEEEEEEe----ccceEEEEEEEecCCCC-cceeeeceEEEEEEcceE---eeccccccceEECCCCeEEEE
Confidence            4455555555554432    24457888999999998 999999999999999988   999875 56999999999998


Q ss_pred             EEEEeCCceeecCHHHHHHHHHHhhCCceEEEEEEEEEEEEEEE
Q 036189          156 VQLATGDSLIFLNHQLLQKINSQRRNGRMVVFGLAVRAKTRFTG  199 (241)
Q Consensus       156 v~l~~~~~~~~l~~~~~~~l~~d~~~G~~v~~~v~v~~~vr~kv  199 (241)
                      +.+.. +     .+..-+.......+|.+-.+++++  +..+++
T Consensus       103 v~l~~-d-----~~~~ke~w~~hi~ngErs~Ir~~i--~~~v~v  138 (161)
T COG5608         103 VPLRL-D-----NSKIKEWWVTHIENGERSTIRVRI--KGVVKV  138 (161)
T ss_pred             EEEEE-e-----hHHHHHHHHHHhhccCcccEEEEE--EEEEEE
Confidence            88877 2     222334455556677632333333  334455

>PLN03160 uncharacterized protein; Provisional

Probab=91.17  E-value=1.5  Score=37.80  Aligned_cols=102  Identities=11%  Similarity=0.073  Sum_probs=52.4

Q ss_pred             CCCCCCCchhhhHHHHHHHHHHHHHHHHHhheeeEEecCC--CCEEEEeeEEEe-------eeecCC----CceeEEEEE
Q 036189           38 QHFQIKKLPKLIIITLLVVAASISLTALICILMYFTLGPK--LPSLHLDTFSVS-------NFTIGS----TNLIAKWDF  104 (241)
Q Consensus        38 ~~~~~~~~~rc~~~~~~~~~~~i~llgl~~lil~lv~rPk--~P~f~V~s~~l~-------~f~~~~----~~l~~~~~~  104 (241)
                      +|+++.+||.|++..+++++   +++++++++++=.=+|+  .-.++|+++.+.       .+|++-    ..-|.|. +
T Consensus        32 ~r~~~~~c~~~~~a~~l~l~---~v~~~l~~~vfrPk~P~~~v~~v~l~~~~~~~~~~~~~~~n~tl~~~v~v~NPN~-~  107 (219)
T PLN03160         32 RRRNCIKCCGCITATLLILA---TTILVLVFTVFRVKDPVIKMNGVTVTKLELINNTTLRPGTNITLIADVSVKNPNV-A  107 (219)
T ss_pred             ccccceEEHHHHHHHHHHHH---HHHHheeeEEEEccCCeEEEEEEEEeeeeeccCCCCceeEEEEEEEEEEEECCCc-e
Confidence            45667778888887776664   23333344444345553  345666666553       233321    1123444 3


Q ss_pred             EEEEeCCCCeeEEEEccEEEEEEeCCcccceeeeccCCCceecCCCeE
Q 036189          105 NLTFKNPDHLWQIYLDYIECIALNHDHFPIAINHSVSPPFKVKPMKKS  152 (241)
Q Consensus       105 ~l~v~NPN~k~~i~Y~~~~v~v~Y~g~~~~~lg~~~vp~F~q~~~~tt  152 (241)
                      .+.-.  |..+.++|+...+.-.    .   +..+.++++.+..-+.+
T Consensus       108 ~~~Y~--~~~~~v~Y~g~~vG~a----~---~p~g~~~ar~T~~l~~t  146 (219)
T PLN03160        108 SFKYS--NTTTTIYYGGTVVGEA----R---TPPGKAKARRTMRMNVT  146 (219)
T ss_pred             eEEEc--CeEEEEEECCEEEEEE----E---cCCcccCCCCeEEEEEE
Confidence            44443  4458889977654321    2   33344455555555544

>TIGR02588 conserved hypothetical protein TIGR02588

Probab=87.79  E-value=1.4  Score=34.48  Aligned_cols=48  Identities=15%  Similarity=0.241  Sum_probs=32.2

Q ss_pred             HHHHHHHhheee--EEecCCCCEEEEeeEEEeeeecCCCceeEEEEEEEEEeCCCC
Q 036189           60 ISLTALICILMY--FTLGPKLPSLHLDTFSVSNFTIGSTNLIAKWDFNLTFKNPDH  113 (241)
Q Consensus        60 i~llgl~~lil~--lv~rPk~P~f~V~s~~l~~f~~~~~~l~~~~~~~l~v~NPN~  113 (241)
                      +++++++.+++|  +.-+++.|.+.+......+      .....+-+-++++|--.
T Consensus        13 ~ill~viglv~y~~l~~~~~pp~l~v~~~~~~r------~~~gqyyVpF~V~N~gg   62 (122)
T TIGR02588        13 LILAAMFGLVAYDWLRYSNKAAVLEVAPAEVER------MQTGQYYVPFAIHNLGG   62 (122)
T ss_pred             HHHHHHHHHHHHHhhccCCCCCeEEEeehheeE------EeCCEEEEEEEEEeCCC
Confidence            456666667775  5566788999888877655      23345667777777654

The function of this protein is unknown. It is always found as part of a two-gene operon with TIGR02587, a protein that appears to span the membrane seven times. It is found in Nostoc sp. PCC 7120, Agrobacterium tumefaciens, Sinorhizobium meliloti, and Gloeobacter violaceus, so far, all of which are bacterial.

>PF09307 MHC2-interact: CLIP, MHC2 interacting; InterPro: IPR015386 This domain is found in MHC class II-associated invariant chain (Ii), and in class II invariant chain-associated peptide (CLIP), and is required for association with class II major histocompatibility complex (MHC II) in the MHC II processing pathway []

Probab=80.18  E-value=0.54  Score=36.39  Aligned_cols=36  Identities=19%  Similarity=0.296  Sum_probs=0.0

Q ss_pred             CCCCchhhhHHHHHHHHHHHHHHHHHhheeeEEecCC
Q 036189           41 QIKKLPKLIIITLLVVAASISLTALICILMYFTLGPK   77 (241)
Q Consensus        41 ~~~~~~rc~~~~~~~~~~~i~llgl~~lil~lv~rPk   77 (241)
                      +|.+|.|++.++.+.+++.++|+|- ++..|++|.=+
T Consensus        24 ~~~s~sra~~vagltvLa~LLiAGQ-a~TaYfv~~Qk   59 (114)
T PF09307_consen   24 QRGSCSRALKVAGLTVLACLLIAGQ-AVTAYFVFQQK   59 (114)
T ss_dssp             -------------------------------------
T ss_pred             CCCCccchhHHHHHHHHHHHHHHhH-HHHHHHHHHhH
Confidence            4567889999888777766777775 45556666653

Ii plays a critical role in the assembly of the MHC, as well as in MHC II antigen processing by stabilising peptide-free class II alpha/beta heterodimers in a complex soon after their synthesis and directing transport of the complex from the endoplasmic reticulum to compartments where peptide loading of class II takes place []. In antigen-presenting cells (APCs), loading of MHC II molecules with peptides is regulated by Ii, which blocks MHC II antigen-binding sites in pre-endosomal compartments []. Several factors modulate the surface expression of MHC II molecules via post-Golgi mechanisms, including CLIP. The Invariant chain contains a single transmembrane domain. Ii first assembles into a trimer and then associates with three class II alpha/beta MHC heterodimers. Although the membrane-proximal region of the Ii luminal domain is structurally disordered, the C-terminal segment of the luminal domain is largely alpha-helical and contains a major interaction site for the Ii trimer []. More information about these proteins can be found at Protein of the Month: MHC [].; GO: 0042289 MHC class II protein binding, 0006886 intracellular protein transport, 0006955 immune response, 0019882 antigen processing and presentation, 0016020 membrane; PDB: 1A6A_C 3QXD_F 3QXA_F 3PDO_C 1MUJ_C 3PGD_F 3PGC_F.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	241
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-07

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 50.6 bits (120), Expect = 2e-07
 Identities = 39/238 (16%), Positives = 68/238 (28%), Gaps = 48/238 (20%)

Query: 17  KVYPLTTGDISQL---PPSRPPHYQHFQIKKLPKLIIITLLVVAASISLTALICILM--- 70
              P     I++      +   +++H    KL  +I           SL  L        
Sbjct: 324 TTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTII---------ESSLNVLEPAEYRKM 374

Query: 71  YFTLG--P---KLPS-------LHLDTFSVSNFTIGSTN--LIAKWDFNLTFKNPDHLWQ 116
           +  L   P    +P+         +    V           L+ K     T   P     
Sbjct: 375 FDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPS---- 430

Query: 117 IYLDY-IECIALNHDHFPIAINHSVSPPFKVKPMKKSTIHVQLATGDSLIF--LNHQLLQ 173
           IYL+  ++       H  I ++H  + P           ++     D   +  + H L  
Sbjct: 431 IYLELKVKLENEYALHRSI-VDH-YNIPKTFDSDDLIPPYL-----DQYFYSHIGHHLKN 483

Query: 174 KINSQRRNG-RMVVFGLA-VRAKTRFTGVSWLWWTEFANLMYTCLDLKVGFKGLSDSD 229
             + +R    RMV      +  K R    +W       N +     LK     + D+D
Sbjct: 484 IEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTL---QQLKFYKPYICDND 538

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	241
1yyc_A	174	LEA protein, putative late embryogenesis abundant	98.02
1xo8_A	151	AT1G01470; structural genomics, protein structure	97.81
3but_A	136	Uncharacterized protein AF_0446; lipid binding pro	97.45

>1yyc_A LEA protein, putative late embryogenesis abundant protein; structural genomics, protein structure initiative, CESG; NMR {Arabidopsis thaliana}

Probab=98.02  E-value=6.3e-05  Score=61.44  Aligned_cols=76  Identities=17%  Similarity=0.192  Sum_probs=68.9

Q ss_pred             CCCEEEEeeEEEeeeecCCCceeEEEEEEEEEeCCCCeeEEEEccEEEEEEeCCcccceeeeccCC-CceecCCCeEEEE
Q 036189           77 KLPSLHLDTFSVSNFTIGSTNLIAKWDFNLTFKNPDHLWQIYLDYIECIALNHDHFPIAINHSVSP-PFKVKPMKKSTIH  155 (241)
Q Consensus        77 k~P~f~V~s~~l~~f~~~~~~l~~~~~~~l~v~NPN~k~~i~Y~~~~v~v~Y~g~~~~~lg~~~vp-~F~q~~~~tt~v~  155 (241)
                      +.|+++|.++.+..++..    ..++.+.+.+.|||. ..+.+..++-.+.-.|..   ++++.++ ++..++++++.+.
T Consensus        43 ~~PeV~v~~v~~~~~~l~----~~~~~l~LrV~NPN~-~pLpi~gi~Y~L~vnG~~---lasG~s~~~~tIpa~g~~~v~  114 (174)
T 1yyc_A           43 PTPEATVDDVDFKGVTRD----GVDYHAKVSVKNPYS-QSIPICQISYILKSATRT---IASGTIPDPGSLVGSGTTVLD  114 (174)
T ss_dssp             CCCEEEEEEEEEEEECSS----SEEEEEEEEEEECSS-SCCBCCSEEEEEEESSSC---EEEEEESCCCBCCSSEEEEEE
T ss_pred             CCCEEEEEEeEEeccccc----eEEEEEEEEEECCCC-CCccccceEEEEEECCEE---EEEEecCCCceECCCCcEEEE
Confidence            679999999999887654    478999999999998 999999999999999998   9999887 5999999999999


Q ss_pred             EEEEe
Q 036189          156 VQLAT  160 (241)
Q Consensus       156 v~l~~  160 (241)
                      +.++.
T Consensus       115 Vpv~v  119 (174)
T 1yyc_A          115 VPVKV  119 (174)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            88888

>1xo8_A AT1G01470; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG, unknown function; NMR {Arabidopsis thaliana} SCOP: b.1.25.1

Probab=97.81  E-value=3e-05  Score=61.90  Aligned_cols=76  Identities=12%  Similarity=0.129  Sum_probs=66.2

Q ss_pred             CCCEEEEeeEEEeeeecCCCceeEEEEEEEEEeCCCCeeEEEEccEEEEEEeCCcccceeeeccCC-CceecCCCeEEEE
Q 036189           77 KLPSLHLDTFSVSNFTIGSTNLIAKWDFNLTFKNPDHLWQIYLDYIECIALNHDHFPIAINHSVSP-PFKVKPMKKSTIH  155 (241)
Q Consensus        77 k~P~f~V~s~~l~~f~~~~~~l~~~~~~~l~v~NPN~k~~i~Y~~~~v~v~Y~g~~~~~lg~~~vp-~F~q~~~~tt~v~  155 (241)
                      +.|+++|.++.+..++.    ...++.+.+.++|||. ..+.+..++..+.-.|..   ++++..+ ++..++++++.+.
T Consensus        20 ~~P~v~v~~v~~~~~~~----~~~~~~~~l~V~NPN~-~~lpi~gi~y~l~vng~~---lasG~~~~~~~ipa~g~~~v~   91 (151)
T 1xo8_A           20 PKPEGSVTDVDLKDVNR----DSVEYLAKVSVTNPYS-HSIPICEISFTFHSAGRE---IGKGKIPDPGSLKAKDMTALD   91 (151)
T ss_dssp             CSCCCBCSEEEECCCTT----TEECEEEEEEEECSSS-SCCCCEEEEEEEESSSSC---EEEEEEEECCCCSSSSEEEEE
T ss_pred             CCCEEEEEEeEEeccCc----ceeEEEEEEEEECCCC-CCcccccEEEEEEECCEE---EEEEecCCCcEECCCCcEEEE
Confidence            56999999999977644    4568999999999998 999999999999889998   9999886 6999999999988


Q ss_pred             EEEEe
Q 036189          156 VQLAT  160 (241)
Q Consensus       156 v~l~~  160 (241)
                      +.++.
T Consensus        92 vpv~v   96 (151)
T 1xo8_A           92 IPVVV   96 (151)
T ss_dssp             ECCCE
T ss_pred             EEEEE
Confidence            77766

>3but_A Uncharacterized protein AF_0446; lipid binding protein, beta barrel, protein structure initia PSI-2; 1.91A {Archaeoglobus fulgidus dsm 4304}

Probab=97.45  E-value=0.0025  Score=49.86  Aligned_cols=90  Identities=17%  Similarity=0.126  Sum_probs=65.7

Q ss_pred             eeEEEEEEEEEeCCCCeeEEEEccEEEEEEeCCcccceeeecc-CCCceecCCCeEEEEEEEEeCCceeecCHHHHHHHH
Q 036189           98 LIAKWDFNLTFKNPDHLWQIYLDYIECIALNHDHFPIAINHSV-SPPFKVKPMKKSTIHVQLATGDSLIFLNHQLLQKIN  176 (241)
Q Consensus        98 l~~~~~~~l~v~NPN~k~~i~Y~~~~v~v~Y~g~~~~~lg~~~-vp~F~q~~~~tt~v~v~l~~~~~~~~l~~~~~~~l~  176 (241)
                      -...+.+++.+.|||. ..+.++.++..++..|..   +|++. ...+..++.+++.+.+.+....  ..+.+    .+.
T Consensus        16 ~~t~~~~~l~V~NPN~-~~l~i~gl~y~v~lng~~---la~G~s~~~~~I~~~g~~~v~v~~~i~~--~~l~~----~~~   85 (136)
T 3but_A           16 SQTEIVALAKVRNEDV-VPIVVSGYHYTIEMNGVK---VADGYENSPVTVKPASATTLKFSLRLNN--SFLRE----WWV   85 (136)
T ss_dssp             SEEEEEEEEEEECCSS-SCEEEEEEEEEEEETTEE---EEEEEECCCEEECTTCEEEEEEEEEEEH--HHHTT----HHH
T ss_pred             cEEEEEEEEEEeCCCC-cceeeeceEEEEEECCEE---EEeeeecCceEECCCCcEEEEEEEEEch--HHhHH----HHH
Confidence            4577999999999997 999999999999999998   99987 6689999999998988887721  12233    344


Q ss_pred             HHhhCCceEEEEEEEEEEEEEEE
Q 036189          177 SQRRNGRMVVFGLAVRAKTRFTG  199 (241)
Q Consensus       177 ~d~~~G~~v~~~v~v~~~vr~kv  199 (241)
                      +-..+|..-.  ++++++..+++
T Consensus        86 ~hi~nge~s~--l~i~~~~~l~v  106 (136)
T 3but_A           86 THIANGEKTK--IRVAIKPTIEI  106 (136)
T ss_dssp             HHHHTTSEEE--EEEEEEEEEEC
T ss_pred             HHhhcCCceE--EEEEEEEEEEe
Confidence            4444564233  34444445555

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	241
d1xo8a_	151	Putative dessication related protein LEA14 {Thale	97.92

>d1xo8a_ b.1.25.1 (A:) Putative dessication related protein LEA14 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: LEA14-like
family: LEA14-like
domain: Putative dessication related protein LEA14
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.92  E-value=7.7e-06  Score=63.48  Aligned_cols=78  Identities=12%  Similarity=0.135  Sum_probs=67.4

Q ss_pred             cCCCCEEEEeeEEEeeeecCCCceeEEEEEEEEEeCCCCeeEEEEccEEEEEEeCCcccceeeeccCC-CceecCCCeEE
Q 036189           75 GPKLPSLHLDTFSVSNFTIGSTNLIAKWDFNLTFKNPDHLWQIYLDYIECIALNHDHFPIAINHSVSP-PFKVKPMKKST  153 (241)
Q Consensus        75 rPk~P~f~V~s~~l~~f~~~~~~l~~~~~~~l~v~NPN~k~~i~Y~~~~v~v~Y~g~~~~~lg~~~vp-~F~q~~~~tt~  153 (241)
                      +=+.|++++.++++.++...    ..++.+.+.+.|||. .++..+.++-.++..|..   ++++..+ ++..++++++.
T Consensus        18 ~~~kPev~l~~v~i~~v~~~----~~~l~~~l~V~NPN~-~~l~i~~l~y~l~~~g~~---ia~G~~~~~~~ipa~~~~~   89 (151)
T d1xo8a_          18 AIPKPEGSVTDVDLKDVNRD----SVEYLAKVSVTNPYS-HSIPICEISFTFHSAGRE---IGKGKIPDPGSLKAKDMTA   89 (151)
T ss_dssp             CCCSCCCBCSEEEECCCTTT----EECEEEEEEEECSSS-SCCCCEEEEEEEESSSSC---EEEEEEEECCCCSSSSEEE
T ss_pred             CCCCCeEEEEEEEeeecccc----eEEEEEEEEEECCCC-CceeeeeEEEEEEECCEE---EEeEecCCCcEEcCCCcEE
Confidence            34679999999999887554    478999999999998 999999999999999998   9998876 68999999999


Q ss_pred             EEEEEEe
Q 036189          154 IHVQLAT  160 (241)
Q Consensus       154 v~v~l~~  160 (241)
                      +.+.+..
T Consensus        90 v~vpv~v   96 (151)
T d1xo8a_          90 LDIPVVV   96 (151)
T ss_dssp             EEECCCE
T ss_pred             EEEEEEE
Confidence            9877766