Citrus Sinensis ID: 036198
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 499 | 2.2.26 [Sep-21-2011] | |||||||
| Q9FX35 | 568 | Pentatricopeptide repeat- | yes | no | 0.899 | 0.790 | 0.662 | 0.0 | |
| Q9LZP3 | 599 | Pentatricopeptide repeat- | no | no | 0.789 | 0.657 | 0.317 | 1e-57 | |
| Q9LEQ7 | 598 | Pentatricopeptide repeat- | no | no | 0.789 | 0.658 | 0.312 | 5e-56 | |
| Q3EAF8 | 599 | Pentatricopeptide repeat- | no | no | 0.789 | 0.657 | 0.312 | 8e-56 | |
| Q9FVX2 | 517 | Pentatricopeptide repeat- | no | no | 0.811 | 0.783 | 0.288 | 5e-50 | |
| P0C8A0 | 638 | Pentatricopeptide repeat- | no | no | 0.803 | 0.628 | 0.275 | 7e-43 | |
| Q9SSR6 | 523 | Pentatricopeptide repeat- | no | no | 0.787 | 0.751 | 0.280 | 9e-43 | |
| Q9FH87 | 637 | Putative pentatricopeptid | no | no | 0.779 | 0.610 | 0.282 | 3e-41 | |
| Q9LUJ4 | 562 | Pentatricopeptide repeat- | no | no | 0.775 | 0.688 | 0.273 | 1e-39 | |
| Q9LFQ4 | 572 | Pentatricopeptide repeat- | no | no | 0.899 | 0.784 | 0.270 | 2e-38 |
| >sp|Q9FX35|PP117_ARATH Pentatricopeptide repeat-containing protein At1g73400, mitochondrial OS=Arabidopsis thaliana GN=At1g73400 PE=2 SV=2 | Back alignment and function desciption |
|---|
Score = 665 bits (1716), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 314/474 (66%), Positives = 379/474 (79%), Gaps = 25/474 (5%)
Query: 51 VAKLYEAIIDNSNAYDNMEKALDSLGVPLTTDSVVGVLQRFQFEEKIAFRFFMWAGHQDN 110
V L+EAI+ N NAYD+MEKALD V LTT V +LQR Q+EEK AFRFF WAGHQ++
Sbjct: 95 VGILHEAIMANLNAYDDMEKALDESSVDLTTPVVCKILQRLQYEEKTAFRFFTWAGHQEH 154
Query: 111 YAHEPLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLMILKQYTEK-- 168
Y+HEP+AYN MIDILSSTKYK KQFR+V MLDYMKRNNK V VDVLL IL++Y E+
Sbjct: 155 YSHEPIAYNEMIDILSSTKYKNKQFRIVIDMLDYMKRNNKTVVLVDVLLEILRKYCERYL 214
Query: 169 -----------IKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNIL 217
I+VKTQPEINA N+LLDALCKCGLV E + +R++++VKP+ANT+N+L
Sbjct: 215 THVQKFAKRKRIRVKTQPEINAFNMLLDALCKCGLVKEGEALLRRMRHRVKPDANTFNVL 274
Query: 218 ------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGS 265
M+ LEEMI+ GH P+NFTY AIDTFC+A MV EAADLF+FM TKGS
Sbjct: 275 FFGWCRVRDPKKAMKLLEEMIEAGHKPENFTYCAAIDTFCQAGMVDEAADLFDFMITKGS 334
Query: 266 TISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEE 325
+S+PTAKT+A+MIVAL +ND+ EECF L+G MI++GCLPDVSTYK+V+EGMC+A KV+E
Sbjct: 335 AVSAPTAKTFALMIVALAKNDKAEECFELIGRMISTGCLPDVSTYKDVIEGMCMAEKVDE 394
Query: 326 AYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLIS 385
AYKFL+EM NKGYPPDIVTYNCFL+VLC+N+ DEAL+LYGRM+E C PSVQTYNMLIS
Sbjct: 395 AYKFLDEMSNKGYPPDIVTYNCFLRVLCENRKTDEALKLYGRMVESRCAPSVQTYNMLIS 454
Query: 386 MYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKL 445
M+FE+ +PDGAF TW EMDKR C QDV+TYC MI+GLFDC + +EACFLLEEVVNKGLKL
Sbjct: 455 MFFEMDDPDGAFNTWTEMDKRDCVQDVETYCAMINGLFDCHRAKEACFLLEEVVNKGLKL 514
Query: 446 PYRKFDSYLMQLSVIGDLGAIHKLSDHMRKFYNPVIARRLALNQKRVRISLREK 499
PYR FDS+LM+LS +G+L AIHK+S+HM+KFYN +ARR AL++KR LR K
Sbjct: 515 PYRVFDSFLMRLSEVGNLKAIHKVSEHMKKFYNHSMARRFALSEKRKSTKLRGK 568
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LZP3|PP293_ARATH Pentatricopeptide repeat-containing protein At3g62470, mitochondrial OS=Arabidopsis thaliana GN=At3g62470 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 224 bits (571), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 140/441 (31%), Positives = 222/441 (50%), Gaps = 47/441 (10%)
Query: 43 ESSDSVSDVAKLYEAIIDNSNAYD-NMEKALDSLGVPLTTDSVVGVLQRFQFEEKIAFRF 101
ESS + +V ++ + +ID A D NME LD + + L+ D +V VL+RF+ K AFRF
Sbjct: 123 ESSTNPEEVERVCK-VIDELFALDRNMEAVLDEMKLDLSHDLIVEVLERFRHARKPAFRF 181
Query: 102 FMWAGHQDNYAHEPLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLM- 160
F WA + +AH+ YN M+ IL+ T+ QF + S+L+ M + + + M
Sbjct: 182 FCWAAERQGFAHDSRTYNSMMSILAKTR----QFETMVSVLEEMGTKGLLTMETFTIAMK 237
Query: 161 ----------------ILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVK 204
++K+Y KI V+T +N LLD+L + L A+ + ++K
Sbjct: 238 AFAAAKERKKAVGIFELMKKYKFKIGVET------INCLLDSLGRAKLGKEAQVLFDKLK 291
Query: 205 NKVKPNANTYNIL------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTE 252
+ PN TY +L + +MI G PD +N ++ ++R ++
Sbjct: 292 ERFTPNMMTYTVLLNGWCRVRNLIEAARIWNDMIDQGLKPDIVAHNVMLEGLLRSRKKSD 351
Query: 253 AADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKE 312
A LF M++KG P ++Y IMI + ME M++SG PD + Y
Sbjct: 352 AIKLFHVMKSKGPC---PNVRSYTIMIRDFCKQSSMETAIEYFDDMVDSGLQPDAAVYTC 408
Query: 313 VLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVG 372
++ G K++ Y+ L+EM KG+PPD TYN +K++ + K + A R+Y +MI+
Sbjct: 409 LITGFGTQKKLDTVYELLKEMQEKGHPPDGKTYNALIKLMANQKMPEHATRIYNKMIQNE 468
Query: 373 CWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEAC 432
PS+ T+NM++ YF + W EM K+G D ++Y V+I GL K EAC
Sbjct: 469 IEPSIHTFNMIMKSYFMARNYEMGRAVWEEMIKKGICPDDNSYTVLIRGLIGEGKSREAC 528
Query: 433 FLLEEVVNKGLKLP---YRKF 450
LEE+++KG+K P Y KF
Sbjct: 529 RYLEEMLDKGMKTPLIDYNKF 549
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LEQ7|PP382_ARATH Pentatricopeptide repeat-containing protein At5g14820, mitochondrial OS=Arabidopsis thaliana GN=At5g14820 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 219 bits (557), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 138/441 (31%), Positives = 220/441 (49%), Gaps = 47/441 (10%)
Query: 43 ESSDSVSDVAKLYEAIIDNSNAYD-NMEKALDSLGVPLTTDSVVGVLQRFQFEEKIAFRF 101
ESS + +V ++ + +ID A D NME LD + + L+ D +V VL+RF+ K AFRF
Sbjct: 122 ESSTNPEEVERVCK-VIDELFALDRNMEAVLDEMKLDLSHDLIVEVLERFRHARKPAFRF 180
Query: 102 FMWAGHQDNYAHEPLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLM- 160
F WA + +AH+ YN M+ IL+ T+ QF + S+L+ M + + + M
Sbjct: 181 FCWAAERQGFAHDSRTYNSMMSILAKTR----QFETMVSVLEEMGTKGLLTMETFTIAMK 236
Query: 161 ----------------ILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVK 204
++K+Y KI V+T +N LLD+L + L A+ + ++K
Sbjct: 237 AFAAAKERKKAVGIFELMKKYKFKIGVET------INCLLDSLGRAKLGKEAQVLFDKLK 290
Query: 205 NKVKPNANTYNIL------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTE 252
+ PN TY +L + +MI G PD +N ++ ++ ++
Sbjct: 291 ERFTPNMMTYTVLLNGWCRVRNLIEAARIWNDMIDHGLKPDIVAHNVMLEGLLRSMKKSD 350
Query: 253 AADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKE 312
A LF M++KG P ++Y IMI + ME M++SG PD + Y
Sbjct: 351 AIKLFHVMKSKGPC---PNVRSYTIMIRDFCKQSSMETAIEYFDDMVDSGLQPDAAVYTC 407
Query: 313 VLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVG 372
++ G K++ Y+ L+EM KG+PPD TYN +K++ + K + R+Y +MI+
Sbjct: 408 LITGFGTQKKLDTVYELLKEMQEKGHPPDGKTYNALIKLMANQKMPEHGTRIYNKMIQNE 467
Query: 373 CWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEAC 432
PS+ T+NM++ YF + W EM K+G D ++Y V+I GL K EAC
Sbjct: 468 IEPSIHTFNMIMKSYFVARNYEMGRAVWDEMIKKGICPDDNSYTVLIRGLISEGKSREAC 527
Query: 433 FLLEEVVNKGLKLP---YRKF 450
LEE+++KG+K P Y KF
Sbjct: 528 RYLEEMLDKGMKTPLIDYNKF 548
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q3EAF8|PP294_ARATH Pentatricopeptide repeat-containing protein At3g62540, mitochondrial OS=Arabidopsis thaliana GN=At3g62540 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 218 bits (555), Expect = 8e-56, Method: Compositional matrix adjust.
Identities = 138/441 (31%), Positives = 219/441 (49%), Gaps = 47/441 (10%)
Query: 43 ESSDSVSDVAKLYEAIIDNSNAYD-NMEKALDSLGVPLTTDSVVGVLQRFQFEEKIAFRF 101
ESS + +V ++ + +ID A D NME LD + + L+ D +V VL+RF+ K AFRF
Sbjct: 123 ESSTNPEEVERVCK-VIDELFALDRNMEAVLDEMKLDLSHDLIVEVLERFRHARKPAFRF 181
Query: 102 FMWAGHQDNYAHEPLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLM- 160
F WA + +AH YN M+ IL+ T+ QF + S+L+ M + + + M
Sbjct: 182 FCWAAERQGFAHASRTYNSMMSILAKTR----QFETMVSVLEEMGTKGLLTMETFTIAMK 237
Query: 161 ----------------ILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVK 204
++K+Y KI V+T +N LLD+L + L A+ + ++K
Sbjct: 238 AFAAAKERKKAVGIFELMKKYKFKIGVET------INCLLDSLGRAKLGKEAQVLFDKLK 291
Query: 205 NKVKPNANTYNIL------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTE 252
+ PN TY +L + +MI G PD +N ++ ++ ++
Sbjct: 292 ERFTPNMMTYTVLLNGWCRVRNLIEAARIWNDMIDHGLKPDIVAHNVMLEGLLRSMKKSD 351
Query: 253 AADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKE 312
A LF M++KG P ++Y IMI + ME M++SG PD + Y
Sbjct: 352 AIKLFHVMKSKGPC---PNVRSYTIMIRDFCKQSSMETAIEYFDDMVDSGLQPDAAVYTC 408
Query: 313 VLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVG 372
++ G K++ Y+ L+EM KG+PPD TYN +K++ + K + R+Y +MI+
Sbjct: 409 LITGFGTQKKLDTVYELLKEMQEKGHPPDGKTYNALIKLMANQKMPEHGTRIYNKMIQNE 468
Query: 373 CWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEAC 432
PS+ T+NM++ YF + W EM K+G D ++Y V+I GL K EAC
Sbjct: 469 IEPSIHTFNMIMKSYFVARNYEMGRAVWDEMIKKGICPDDNSYTVLIRGLISEGKSREAC 528
Query: 433 FLLEEVVNKGLKLP---YRKF 450
LEE+++KG+K P Y KF
Sbjct: 529 RYLEEMLDKGMKTPLIDYNKF 549
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FVX2|PP129_ARATH Pentatricopeptide repeat-containing protein At1g77360, mitochondrial OS=Arabidopsis thaliana GN=At1g77360 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 199 bits (505), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 129/447 (28%), Positives = 224/447 (50%), Gaps = 42/447 (9%)
Query: 30 IGKVPSLVCKVF-----DESSDSVSDVAKLYEAI--IDNSNAYDNMEKALDSLGVPLTTD 82
I + CK F SS+ V DVA + + I + S+ ++ ALD G+ ++ +
Sbjct: 42 INRQSRFCCKSFLSARLYSSSEQVRDVADVAKNISKVLMSSPQLVLDSALDQSGLRVSQE 101
Query: 83 SVVGVLQRFQFEEKIAFRFFMWAGHQDNYAHEPLAYNLMIDILSSTKYKAKQFRLVCSML 142
V VL RF+ + +RFF W+ Q +Y H AY++MI+ + K +Q++L+ ++
Sbjct: 102 VVEDVLNRFRNAGLLTYRFFQWSEKQRHYEHSVRAYHMMIE----STAKIRQYKLMWDLI 157
Query: 143 DYMKRNNKVFVPVDVLLMILKQYTEKIKVKTQ-------------PEINALNLLLDALCK 189
+ M++ K + V+ +++++Y KV P + A N LL ALCK
Sbjct: 158 NAMRK--KKMLNVETFCIVMRKYARAQKVDEAIYAFNVMEKYDLPPNLVAFNGLLSALCK 215
Query: 190 CGLVDYAETICKRVKNKVKPNANTYNIL------------GMQTLEEMIQMGHAPDNFTY 237
V A+ + + ++++ P++ TY+IL + EMI G PD TY
Sbjct: 216 SKNVRKAQEVFENMRDRFTPDSKTYSILLEGWGKEPNLPKAREVFREMIDAGCHPDIVTY 275
Query: 238 NTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGH 297
+ +D CKA V EA + +R+ +I PT Y++++ +R+EE
Sbjct: 276 SIMVDILCKAGRVDEALGI---VRSMDPSICKPTTFIYSVLVHTYGTENRLEEAVDTFLE 332
Query: 298 MINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKN 357
M SG DV+ + ++ C A +++ Y+ L+EM +KG P+ + N L+ L +
Sbjct: 333 MERSGMKADVAVFNSLIGAFCKANRMKNVYRVLKEMKSKGVTPNSKSCNIILRHLIERGE 392
Query: 358 GDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCV 417
DEA ++ +MI+V C P TY M+I M+ E E + A + W M K+G + T+ V
Sbjct: 393 KDEAFDVFRKMIKV-CEPDADTYTMVIKMFCEKKEMETADKVWKYMRKKGVFPSMHTFSV 451
Query: 418 MIDGLFDCSKVEEACFLLEEVVNKGLK 444
+I+GL + ++AC LLEE++ G++
Sbjct: 452 LINGLCEERTTQKACVLLEEMIEMGIR 478
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|P0C8A0|PP275_ARATH Pentatricopeptide repeat-containing protein At3g49730 OS=Arabidopsis thaliana GN=At3g49730 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 175 bits (444), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 120/435 (27%), Positives = 203/435 (46%), Gaps = 34/435 (7%)
Query: 35 SLVCKVFDESSDSVSDVAKLYEAIIDNSNAYDNMEKALDSLGVPLTTDSVVGVLQRFQFE 94
LVC E + +V K+Y + ++ + +E AL+ G+ L ++ VL R
Sbjct: 52 GLVCPEKHED-EFAGEVEKIYRILRNHHSRVPKLELALNESGIDLRPGLIIRVLSRCGDA 110
Query: 95 EKIAFRFFMWAGHQDNYAHEPLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVP 154
+ +RFF+WA Q Y H M+ ILS K +QF V +++ M++ N +
Sbjct: 111 GNLGYRFFLWATKQPGYFHSYEVCKSMVMILS----KMRQFGAVWGLIEEMRKTNPELIE 166
Query: 155 VDVLLMILKQYTEKIKVKT-------------QPEINALNLLLDALCKCGLVDYAETICK 201
++ +++++++ VK +P+ LLDALCK G V A + +
Sbjct: 167 PELFVVLMRRFASANMVKKAVEVLDEMPKYGLEPDEYVFGCLLDALCKNGSVKEASKVFE 226
Query: 202 RVKNKVKPNANTYNILG---------MQTLEEMIQMGHA---PDNFTYNTAIDTFCKARM 249
++ K PN + L M+ E ++QM A PD + + + A
Sbjct: 227 DMREKFPPNLRYFTSLLYGWCREGKLMEAKEVLVQMKEAGLEPDIVVFTNLLSGYAHAGK 286
Query: 250 VTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQND-RMEECFSLLGHMINSGCLPDVS 308
+ +A DL MR +G P Y ++I AL + + RM+E + M GC D+
Sbjct: 287 MADAYDLMNDMRKRGF---EPNVNCYTVLIQALCRTEKRMDEAMRVFVEMERYGCEADIV 343
Query: 309 TYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRM 368
TY ++ G C G +++ Y L++M KG P VTY + + +E L L +M
Sbjct: 344 TYTALISGFCKWGMIDKGYSVLDDMRKKGVMPSQVTYMQIMVAHEKKEQFEECLELIEKM 403
Query: 369 IEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKV 428
GC P + YN++I + +LGE A W+EM+ G + VDT+ +MI+G +
Sbjct: 404 KRRGCHPDLLIYNVVIRLACKLGEVKEAVRLWNEMEANGLSPGVDTFVIMINGFTSQGFL 463
Query: 429 EEACFLLEEVVNKGL 443
EAC +E+V++G+
Sbjct: 464 IEACNHFKEMVSRGI 478
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SSR6|PPR78_ARATH Pentatricopeptide repeat-containing protein At1g52640, mitochondrial OS=Arabidopsis thaliana GN=At1g52640 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 175 bits (443), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 121/431 (28%), Positives = 208/431 (48%), Gaps = 38/431 (8%)
Query: 44 SSDSVSDVAKLYEAIIDNSNAYDNMEKALDSLGVPLTTDSVVGVLQRFQFEEKIAFRFFM 103
S D V++++++ + D+ N D++E L + ++++ V VL+R + A RFF+
Sbjct: 34 SPDLVNEISRV---LSDHRNPKDDLEHTLVAYSPRVSSNLVEQVLKRCKNLGFPAHRFFL 90
Query: 104 WAGHQDNYAHEPLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLMILK 163
WA ++AH +Y+++++IL S+K QF L+ L + N + V ++ +
Sbjct: 91 WARRIPDFAHSLESYHILVEILGSSK----QFALLWDFLIEAREYNYFEISSKVFWIVFR 146
Query: 164 QYTEK-------------IKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKN-KVKP 209
Y+ ++ +P ++ L+ LL +LC V++A+ + K + P
Sbjct: 147 AYSRANLPSEACRAFNRMVEFGIKPCVDDLDQLLHSLCDKKHVNHAQEFFGKAKGFGIVP 206
Query: 210 NANTYNIL------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLF 257
+A TY+IL + +EM++ D YN +D CK+ V +F
Sbjct: 207 SAKTYSILVRGWARIRDASGARKVFDEMLERNCVVDLLAYNALLDALCKSGDVDGGYKMF 266
Query: 258 EFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGM 317
+ M G+ P A ++AI I A + + +L M +P+V T+ +++ +
Sbjct: 267 QEM---GNLGLKPDAYSFAIFIHAYCDAGDVHSAYKVLDRMKRYDLVPNVYTFNHIIKTL 323
Query: 318 CLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSV 377
C KV++AY L+EM KG PD TYN + CD+ + A +L RM C P
Sbjct: 324 CKNEKVDDAYLLLDEMIQKGANPDTWTYNSIMAYHCDHCEVNRATKLLSRMDRTKCLPDR 383
Query: 378 QTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLF-DCSKVEEACFLLE 436
TYNM++ + +G D A E W M +R V TY VMI GL K+EEAC E
Sbjct: 384 HTYNMVLKLLIRIGRFDRATEIWEGMSERKFYPTVATYTVMIHGLVRKKGKLEEACRYFE 443
Query: 437 EVVNKGLKLPY 447
++++G+ PY
Sbjct: 444 MMIDEGIP-PY 453
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FH87|PP447_ARATH Putative pentatricopeptide repeat-containing protein At5g65820 OS=Arabidopsis thaliana GN=At5g65820 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 170 bits (430), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 119/421 (28%), Positives = 194/421 (46%), Gaps = 32/421 (7%)
Query: 48 VSDVAKLYEAIIDNSNAYDNMEKALDSLGVPLTTDSVVGVLQRFQFEEKIAFRFFMWAGH 107
SDV K Y + + +E AL+ GV L + VL R + +RFF+WA
Sbjct: 80 ASDVEKSYRILRKFHSRVPKLELALNESGVELRPGLIERVLNRCGDAGNLGYRFFVWAAK 139
Query: 108 QDNYAHEPLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLMILKQYTE 167
Q Y H Y M+ ILS K +QF V +++ M++ N + ++ +++++++
Sbjct: 140 QPRYCHSIEVYKSMVKILS----KMRQFGAVWGLIEEMRKENPQLIEPELFVVLVQRFAS 195
Query: 168 KIKVKT-------------QPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTY 214
VK +P+ LLDALCK G V A + + ++ + N +
Sbjct: 196 ADMVKKAIEVLDEMPKFGFEPDEYVFGCLLDALCKHGSVKDAAKLFEDMRMRFPVNLRYF 255
Query: 215 NIL------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRT 262
L L +M + G PD Y + + A + +A DL MR
Sbjct: 256 TSLLYGWCRVGKMMEAKYVLVQMNEAGFEPDIVDYTNLLSGYANAGKMADAYDLLRDMRR 315
Query: 263 KGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGK 322
+G P A Y ++I AL + DRMEE + M C DV TY ++ G C GK
Sbjct: 316 RGF---EPNANCYTVLIQALCKVDRMEEAMKVFVEMERYECEADVVTYTALVSGFCKWGK 372
Query: 323 VEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNM 382
+++ Y L++M KG P +TY + ++ +E L L +M ++ P + YN+
Sbjct: 373 IDKCYIVLDDMIKKGLMPSELTYMHIMVAHEKKESFEECLELMEKMRQIEYHPDIGIYNV 432
Query: 383 LISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKG 442
+I + +LGE A W+EM++ G + VDT+ +MI+GL + EA +E+V +G
Sbjct: 433 VIRLACKLGEVKEAVRLWNEMEENGLSPGVDTFVIMINGLASQGCLLEASDHFKEMVTRG 492
Query: 443 L 443
L
Sbjct: 493 L 493
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LUJ4|PP248_ARATH Pentatricopeptide repeat-containing protein At3g22670, mitochondrial OS=Arabidopsis thaliana GN=At3g22670 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 164 bits (416), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 117/428 (27%), Positives = 201/428 (46%), Gaps = 41/428 (9%)
Query: 48 VSDVAKLYEAIIDNSNAYDNMEKALDSLGVPLTTDSVVGVLQRFQFEEKIAFRFFMWAGH 107
V D+ K+ + + +++++ K L V +T V+ VL+RF A+ FF+WA
Sbjct: 99 VEDIDKVCDFLNKKDTSHEDVVKELSKCDVVVTESLVLQVLRRFSNGWNQAYGFFIWANS 158
Query: 108 QDNYAHEPLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKV-FVPVDVLLMILKQYT 166
Q Y H YN M+D+L K + F L+ +++ M +N + V +D + ++++
Sbjct: 159 QTGYVHSGHTYNAMVDVLG----KCRNFDLMWELVNEMNKNEESKLVTLDTMSKVMRRLA 214
Query: 167 EKIK----------------VKTQPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPN 210
+ K VKT + A+N L+DAL K +++A + ++ + +KP+
Sbjct: 215 KSGKYNKAVDAFLEMEKSYGVKT--DTIAMNSLMDALVKENSIEHAHEVFLKLFDTIKPD 272
Query: 211 ANTYNIL------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFE 258
A T+NIL ++ M PD TY + ++ +CK ++ E
Sbjct: 273 ARTFNILIHGFCKARKFDDARAMMDLMKVTEFTPDVVTYTSFVEAYCKEGDFRRVNEMLE 332
Query: 259 FMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMC 318
MR G +P TY I++ +L ++ ++ E + M GC+PD Y ++ +
Sbjct: 333 EMRENG---CNPNVVTYTIVMHSLGKSKQVAEALGVYEKMKEDGCVPDAKFYSSLIHILS 389
Query: 319 LAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIE---VGCWP 375
G+ ++A + E+M N+G D++ YN + + + ALRL RM + C P
Sbjct: 390 KTGRFKDAAEIFEDMTNQGVRRDVLVYNTMISAALHHSRDEMALRLLKRMEDEEGESCSP 449
Query: 376 SVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLL 435
+V+TY L+ M + H M K + DV TY ++I GL KVEEAC
Sbjct: 450 NVETYAPLLKMCCHKKKMKLLGILLHHMVKNDVSIDVSTYILLIRGLCMSGKVEEACLFF 509
Query: 436 EEVVNKGL 443
EE V KG+
Sbjct: 510 EEAVRKGM 517
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LFQ4|PP383_ARATH Pentatricopeptide repeat-containing protein At5g15010, mitochondrial OS=Arabidopsis thaliana GN=At5g15010 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 160 bits (406), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 134/495 (27%), Positives = 227/495 (45%), Gaps = 46/495 (9%)
Query: 36 LVCKVFDESSDSVSDVAKLYEAIIDNSNAYDNMEKALDSLGVPLTTDSVVGVLQRFQFEE 95
L C + DE DV K+ + + D + + L+ V + + VV +L R + +
Sbjct: 84 LGCSISDELVSE--DVGKISKLVKDCGSDRKELRNKLEECDVKPSNELVVEILSRVRNDW 141
Query: 96 KIAFRFFMWAGHQDNYAHEPLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPV 155
+ AF FF+WAG Q Y Y+ MI IL K ++F +++D M++ + V
Sbjct: 142 ETAFTFFVWAGKQQGYVRSVREYHSMISILG----KMRKFDTAWTLIDEMRKFSPSLVNS 197
Query: 156 DVLLMILKQYTEKIKV-------------KTQPEINALNLLLDALCKCGLVDYAETICKR 202
LL+++++Y V K + I+ LL ALC+ V A +
Sbjct: 198 QTLLIMIRKYCAVHDVGKAINTFHAYKRFKLEMGIDDFQSLLSALCRYKNVSDAGHLIFC 257
Query: 203 VKNKVKPNANTYNIL-------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARM 249
K+K +A ++NI+ + EM +G D +Y++ I + K
Sbjct: 258 NKDKYPFDAKSFNIVLNGWCNVIGSPREAERVWMEMGNVGVKHDVVSYSSMISCYSKGGS 317
Query: 250 VTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINS-GCLPDVS 308
+ + LF+ M+ + P K Y ++ AL + + E +L+ M G P+V
Sbjct: 318 LNKVLKLFDRMKKE---CIEPDRKVYNAVVHALAKASFVSEARNLMKTMEEEKGIEPNVV 374
Query: 309 TYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRM 368
TY +++ +C A K EEA + +EM KG P I TY+ F+++L + G+E L +M
Sbjct: 375 TYNSLIKPLCKARKTEEAKQVFDEMLEKGLFPTIRTYHAFMRIL---RTGEEVFELLAKM 431
Query: 369 IEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKV 428
++GC P+V+TY MLI + D W EM ++ D+ +Y VMI GLF K+
Sbjct: 432 RKMGCEPTVETYIMLIRKLCRWRDFDNVLLLWDEMKEKTVGPDLSSYIVMIHGLFLNGKI 491
Query: 429 EEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHMRKFYNPVIARRLA-- 486
EEA +E+ +KG++ P + ++Q G A +++D + I ++
Sbjct: 492 EEAYGYYKEMKDKGMR-PNENVED-MIQSWFSGKQYAEQRITDSKGEVNKGAIVKKSERE 549
Query: 487 ---LNQKRVRISLRE 498
L Q VR +RE
Sbjct: 550 KNFLQQPEVRKVVRE 564
|
Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 499 | ||||||
| 225427504 | 709 | PREDICTED: pentatricopeptide repeat-cont | 0.905 | 0.637 | 0.740 | 0.0 | |
| 147782978 | 708 | hypothetical protein VITISV_034914 [Viti | 0.901 | 0.635 | 0.738 | 0.0 | |
| 224111364 | 472 | predicted protein [Populus trichocarpa] | 0.867 | 0.917 | 0.718 | 0.0 | |
| 356560073 | 466 | PREDICTED: pentatricopeptide repeat-cont | 0.883 | 0.946 | 0.697 | 0.0 | |
| 356531098 | 466 | PREDICTED: pentatricopeptide repeat-cont | 0.883 | 0.946 | 0.680 | 0.0 | |
| 296088471 | 673 | unnamed protein product [Vitis vinifera] | 0.857 | 0.635 | 0.720 | 0.0 | |
| 334183891 | 568 | pentatricopeptide repeat-containing prot | 0.899 | 0.790 | 0.662 | 0.0 | |
| 297839201 | 490 | pentatricopeptide repeat-containing prot | 0.879 | 0.895 | 0.668 | 0.0 | |
| 11120809 | 466 | hypothetical protein [Arabidopsis thalia | 0.879 | 0.942 | 0.665 | 0.0 | |
| 449442339 | 559 | PREDICTED: pentatricopeptide repeat-cont | 0.903 | 0.806 | 0.661 | 0.0 |
| >gi|225427504|ref|XP_002263624.1| PREDICTED: pentatricopeptide repeat-containing protein At1g73400, mitochondrial-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 714 bits (1843), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 353/477 (74%), Positives = 403/477 (84%), Gaps = 25/477 (5%)
Query: 48 VSDVAKLYEAIIDNSNAYDNMEKALDSLGVPLTTDSVVGVLQRFQFEEKIAFRFFMWAGH 107
VSD KLY+AI +N+N +MEKALD +GV LTTD V+ +L + FEEK+AFRFFMWAGH
Sbjct: 233 VSDADKLYKAIANNANPESDMEKALDLVGVELTTDLVIEILGKIHFEEKMAFRFFMWAGH 292
Query: 108 QDNYAHEPLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLMILKQYTE 167
QD Y+HEP AYN MIDILSSTKYK KQFR+VC MLDYMKRN+K VPV+VLLMIL++YTE
Sbjct: 293 QDCYSHEPRAYNEMIDILSSTKYKVKQFRIVCDMLDYMKRNDKKSVPVEVLLMILRKYTE 352
Query: 168 K-------------IKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTY 214
K I+VKTQPEINALNLLLDALCKC LV+ A+ + +RVKNKVKP+ANTY
Sbjct: 353 KHLAHLHKFAKKKKIRVKTQPEINALNLLLDALCKCSLVEDAQAMFRRVKNKVKPDANTY 412
Query: 215 NIL------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRT 262
NIL GM+ LEEMI+MGH PD+FTYNTAID+FCKA MVTEA +LFEFMRT
Sbjct: 413 NILFFGWCRVRNPSRGMRVLEEMIEMGHTPDSFTYNTAIDSFCKAGMVTEATELFEFMRT 472
Query: 263 KGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGK 322
KGST+SSPTAKTYAIMI+ALVQ+DR EECF L+ MINSG LPDVSTYK+V+EGMCLAGK
Sbjct: 473 KGSTMSSPTAKTYAIMILALVQSDRTEECFKLIKDMINSGVLPDVSTYKQVIEGMCLAGK 532
Query: 323 VEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNM 382
VEEAYKFLEEMGNKGY PDIVTYNCFL VLC+NK +EAL LYGRMIE GC PSV T+NM
Sbjct: 533 VEEAYKFLEEMGNKGYRPDIVTYNCFLDVLCENKKSEEALGLYGRMIEAGCVPSVHTFNM 592
Query: 383 LISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKG 442
LISM+FE+GEPDGAFETWHEMDKRGCA+D DTYCVMI+GLF+C+K+E+ACFLL+EVVNKG
Sbjct: 593 LISMFFEIGEPDGAFETWHEMDKRGCARDTDTYCVMIEGLFNCNKMEDACFLLDEVVNKG 652
Query: 443 LKLPYRKFDSYLMQLSVIGDLGAIHKLSDHMRKFYNPVIARRLALNQKRVRISLREK 499
+KLPYRKFD +LMQLS+IGDL AIHKLS+HMRKFYNP +ARR ALNQKR +SLR K
Sbjct: 653 IKLPYRKFDCFLMQLSMIGDLQAIHKLSEHMRKFYNPAMARRFALNQKRRSMSLRGK 709
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147782978|emb|CAN70810.1| hypothetical protein VITISV_034914 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 711 bits (1835), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 351/475 (73%), Positives = 402/475 (84%), Gaps = 25/475 (5%)
Query: 48 VSDVAKLYEAIIDNSNAYDNMEKALDSLGVPLTTDSVVGVLQRFQFEEKIAFRFFMWAGH 107
VSD KLY+AI +N+N +MEKALD +GV LTTD V+ +L + FEEK+AFRFFMWAGH
Sbjct: 206 VSDADKLYKAIANNANPESDMEKALDLVGVELTTDLVIEILGKIHFEEKMAFRFFMWAGH 265
Query: 108 QDNYAHEPLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLMILKQYTE 167
QD Y+HEP AYN MIDILSSTKYK KQFR+VC MLDYMKRN+K VPV+VLLMIL++YTE
Sbjct: 266 QDCYSHEPRAYNEMIDILSSTKYKVKQFRIVCDMLDYMKRNDKKSVPVEVLLMILRKYTE 325
Query: 168 K-------------IKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTY 214
K I+VKTQPEINALNLLLDALCKC LV+ A+ + +RVKNKVKP+ANTY
Sbjct: 326 KHLAHLHKFAKKKKIRVKTQPEINALNLLLDALCKCSLVEDAQAMFRRVKNKVKPDANTY 385
Query: 215 NIL------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRT 262
NIL GM+ LEEMI+MGH PD+FTYNTAID+FCKA MVTEA +LFEFMRT
Sbjct: 386 NILFFGWCRVRNPSRGMRVLEEMIEMGHTPDSFTYNTAIDSFCKAGMVTEATELFEFMRT 445
Query: 263 KGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGK 322
KGST+SSPTAKTYAIMI+ALVQ+DR EECF L+ MINSG LPDVSTYK+V+EGMCLAGK
Sbjct: 446 KGSTMSSPTAKTYAIMILALVQSDRTEECFKLIKDMINSGVLPDVSTYKQVIEGMCLAGK 505
Query: 323 VEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNM 382
VEEAYKFLEEMGNKGY PDIVTYNCFL VLC+NK +EAL LYGRMIE GC PSV T+NM
Sbjct: 506 VEEAYKFLEEMGNKGYRPDIVTYNCFLDVLCENKKSEEALGLYGRMIEAGCVPSVHTFNM 565
Query: 383 LISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKG 442
LISM+FE+GEPDGAFETWHEMDKRGCA+D DTYCVMI+GLF+C+K+E+ACFLL+EV+NKG
Sbjct: 566 LISMFFEIGEPDGAFETWHEMDKRGCARDTDTYCVMIEGLFNCNKMEDACFLLDEVINKG 625
Query: 443 LKLPYRKFDSYLMQLSVIGDLGAIHKLSDHMRKFYNPVIARRLALNQKRVRISLR 497
+KLPYRKFD +LMQLS+IGDL AIHKLS+HMRKFYNP +ARR ALNQKR +SLR
Sbjct: 626 IKLPYRKFDCFLMQLSMIGDLQAIHKLSEHMRKFYNPAMARRFALNQKRRSMSLR 680
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224111364|ref|XP_002315827.1| predicted protein [Populus trichocarpa] gi|222864867|gb|EEF01998.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 695 bits (1794), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 329/458 (71%), Positives = 386/458 (84%), Gaps = 25/458 (5%)
Query: 67 NMEKALDSLGVPLTTDSVVGVLQRFQFEEKIAFRFFMWAGHQDNYAHEPLAYNLMIDILS 126
N+EK LD LG+ LTTD V+ VL R FEEK +FRFFMWAGHQ NY+HEP AYN MIDIL+
Sbjct: 15 NLEKTLDQLGLELTTDLVLNVLGRLHFEEKTSFRFFMWAGHQKNYSHEPCAYNEMIDILT 74
Query: 127 STKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLMILKQYTEK-------------IKVKT 173
STKYKA+QFR+VC MLDYMKRNNK VPV+VLL IL+ YTEK I+VKT
Sbjct: 75 STKYKARQFRIVCDMLDYMKRNNKNVVPVEVLLTILRNYTEKYLTRVQKFAKKKRIRVKT 134
Query: 174 QPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNIL------------GMQT 221
QPEINA NLLLDALCKC L + AE + KRVKNKVKP+ANTYN++ GM+
Sbjct: 135 QPEINAFNLLLDALCKCCLAEDAEGLFKRVKNKVKPDANTYNVMFFGWCRVRNPTRGMKV 194
Query: 222 LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVA 281
LEEMIQ+GH PD+FTY TAID FC+A MV EAA+LFEFMRTKGST+SSPTAKTYAIMI A
Sbjct: 195 LEEMIQLGHTPDSFTYITAIDAFCRAGMVNEAAELFEFMRTKGSTMSSPTAKTYAIMIGA 254
Query: 282 LVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPD 341
LV+N+RM+ECF LL MINSGCLPDVST+KE++EGMC AGK++EAY+FL+EMGNKGYPPD
Sbjct: 255 LVRNNRMDECFKLLEDMINSGCLPDVSTFKELIEGMCSAGKIDEAYRFLQEMGNKGYPPD 314
Query: 342 IVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWH 401
IVTYNCFLKVLC+NKN +EALRLY RMIE GC+PSVQT+NMLISM+FE+G+PDGAFETW+
Sbjct: 315 IVTYNCFLKVLCENKNSEEALRLYERMIEAGCFPSVQTHNMLISMFFEMGDPDGAFETWY 374
Query: 402 EMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIG 461
EMDKRGCAQDVDTY VMIDGLF C+KVE+ACFL+E++VNKG+KLPY+KFDS+LMQLSVIG
Sbjct: 375 EMDKRGCAQDVDTYIVMIDGLFGCNKVEDACFLIEDIVNKGMKLPYQKFDSFLMQLSVIG 434
Query: 462 DLGAIHKLSDHMRKFYNPVIARRLALNQKRVRISLREK 499
++ AIH+LS+HMR F+NP +ARR LNQKR +S+R +
Sbjct: 435 NIRAIHRLSEHMRTFHNPSMARRYVLNQKRKSMSVRGR 472
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356560073|ref|XP_003548320.1| PREDICTED: pentatricopeptide repeat-containing protein At1g73400, mitochondrial-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 690 bits (1780), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 325/466 (69%), Positives = 388/466 (83%), Gaps = 25/466 (5%)
Query: 59 IDNSNAYDNMEKALDSLGVPLTTDSVVGVLQRFQFEEKIAFRFFMWAGHQDNYAHEPLAY 118
+DN ++NMEKAL LG+PL+T V GVL R +++EKIA RFF WAGHQ++Y+HEP AY
Sbjct: 1 MDNLAEFNNMEKALGQLGIPLSTPLVTGVLHRLRYDEKIALRFFTWAGHQEDYSHEPCAY 60
Query: 119 NLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLMILKQYTEK---------- 168
N M+DILSST+YK KQFR+VC +L+YMKRNNK VPV+VLL+IL++YTEK
Sbjct: 61 NDMMDILSSTRYKVKQFRIVCDVLEYMKRNNKTTVPVEVLLVILRKYTEKYLTHVQKFAR 120
Query: 169 ---IKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNIL-------- 217
I+VKTQPEINA NLLLDALCKC LV+ AET+ K+++ VKPNA TYNI
Sbjct: 121 KRRIRVKTQPEINAFNLLLDALCKCCLVEDAETLYKKMRKTVKPNAETYNIFVFGWCRVR 180
Query: 218 ----GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAK 273
GM+ LEEM+++GH PDNF YNTAIDT+CKA MVTEA DLFEFMRTKGS+ISSPTAK
Sbjct: 181 NPTRGMKLLEEMVELGHRPDNFAYNTAIDTYCKAGMVTEAVDLFEFMRTKGSSISSPTAK 240
Query: 274 TYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEM 333
TYAI+IVAL Q+DRMEECF L+GHMI+SGCLPDV+TYKE++EGMC+ GK++EAYKFLEEM
Sbjct: 241 TYAIIIVALAQHDRMEECFKLIGHMISSGCLPDVTTYKEIIEGMCVCGKIDEAYKFLEEM 300
Query: 334 GNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEP 393
GNK Y PDIVTYNCFLKVLCDNK ++AL+LYGRMIE+ C PSVQTYNMLISM+FE+ +P
Sbjct: 301 GNKSYRPDIVTYNCFLKVLCDNKKSEDALKLYGRMIELNCIPSVQTYNMLISMFFEIDDP 360
Query: 394 DGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSY 453
DGAFETW EMD RGC D+DTY VMIDGLF+C+KVE+ACFLLEEV+NKG+KLPY+KFDS+
Sbjct: 361 DGAFETWQEMDNRGCRPDIDTYSVMIDGLFNCNKVEDACFLLEEVINKGIKLPYKKFDSF 420
Query: 454 LMQLSVIGDLGAIHKLSDHMRKFYNPVIARRLALNQKRVRISLREK 499
LMQLSVIGDL AIH++S+HMRKFYN +ARR AL+QKR +SLR K
Sbjct: 421 LMQLSVIGDLQAIHRVSEHMRKFYNHGMARRYALSQKRKSMSLRGK 466
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356531098|ref|XP_003534115.1| PREDICTED: pentatricopeptide repeat-containing protein At1g73400, mitochondrial-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 677 bits (1747), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 317/466 (68%), Positives = 385/466 (82%), Gaps = 25/466 (5%)
Query: 59 IDNSNAYDNMEKALDSLGVPLTTDSVVGVLQRFQFEEKIAFRFFMWAGHQDNYAHEPLAY 118
+DN ++NME AL LG+PL+T V G L R +++EKIA RFF WAGHQ++Y+HEP AY
Sbjct: 1 MDNLAGFNNMENALGQLGIPLSTPLVTGGLHRLRYDEKIALRFFTWAGHQEDYSHEPCAY 60
Query: 119 NLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLMILKQYTEK---------- 168
N M+DILSST+YK KQFR+VC +L+YMKRNN+ VP +VLL+IL++YTEK
Sbjct: 61 NDMMDILSSTRYKVKQFRIVCDVLEYMKRNNRTMVPAEVLLVILRKYTEKYLTHMQKFAK 120
Query: 169 ---IKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNIL-------- 217
I+VKTQ EINA NLLLDALCKC LV+ AE++ K+++ VKPNA TYNIL
Sbjct: 121 KKRIRVKTQLEINAFNLLLDALCKCCLVEDAESLYKKMRKTVKPNAETYNILVFGWCRVR 180
Query: 218 ----GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAK 273
GM+ LEEMI++GH PDNFTYNTAIDT+CK M+TEA DLFEFMRTKGSTISSPTAK
Sbjct: 181 NPTRGMKLLEEMIELGHRPDNFTYNTAIDTYCKTGMITEAVDLFEFMRTKGSTISSPTAK 240
Query: 274 TYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEM 333
TYAI+IVAL Q+DRME+CF L+GHMI+SGCLPDV+TYKE++EGMC+ GK++EAYKFLEEM
Sbjct: 241 TYAIIIVALAQHDRMEDCFKLIGHMISSGCLPDVTTYKEIIEGMCMCGKIDEAYKFLEEM 300
Query: 334 GNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEP 393
GNK Y PDIVTYNCFLKVLCDNK ++AL+LYGRMIE+ C PSVQTYNMLISM+FE+ +P
Sbjct: 301 GNKSYRPDIVTYNCFLKVLCDNKKSEDALKLYGRMIELNCIPSVQTYNMLISMFFEMDDP 360
Query: 394 DGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSY 453
DGAFETW E+D RGC D DTYCVMI+GLF+C+K+E+ACFLLEEV+N+G+KLPY+KFDS+
Sbjct: 361 DGAFETWQEIDNRGCRPDTDTYCVMIEGLFNCNKMEDACFLLEEVINEGVKLPYKKFDSF 420
Query: 454 LMQLSVIGDLGAIHKLSDHMRKFYNPVIARRLALNQKRVRISLREK 499
LMQLSVIGDL AIH+LS+HM+KFYN +ARR AL+QKR +SLR K
Sbjct: 421 LMQLSVIGDLQAIHRLSEHMKKFYNHGMARRFALSQKRKSLSLRGK 466
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|296088471|emb|CBI37462.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 669 bits (1727), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 335/465 (72%), Positives = 381/465 (81%), Gaps = 37/465 (7%)
Query: 48 VSDVAKLYEAIIDNSNAYDNMEKALDSLGVPLTTDSVVGVLQRFQFEEKIAFRFFMWAGH 107
VSD KLY+AI +N+N +MEKALD +GV LTTD V+ +L + FEEK+AFRFFMWAGH
Sbjct: 233 VSDADKLYKAIANNANPESDMEKALDLVGVELTTDLVIEILGKIHFEEKMAFRFFMWAGH 292
Query: 108 QDNYAHEPLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLMILKQYTE 167
QD Y+HEP AYN MIDILSSTKYK KQFR+VC MLDYMKRN+K VPV+VLLMIL++YTE
Sbjct: 293 QDCYSHEPRAYNEMIDILSSTKYKVKQFRIVCDMLDYMKRNDKKSVPVEVLLMILRKYTE 352
Query: 168 -------------KIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTY 214
KI+VKTQPEINALNLLLDALCK P+
Sbjct: 353 KHLAHLHKFAKKKKIRVKTQPEINALNLLLDALCK------------------NPSR--- 391
Query: 215 NILGMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKT 274
GM+ LEEMI+MGH PD+FTYNTAID+FCKA MVTEA +LFEFMRTKGST+SSPTAKT
Sbjct: 392 ---GMRVLEEMIEMGHTPDSFTYNTAIDSFCKAGMVTEATELFEFMRTKGSTMSSPTAKT 448
Query: 275 YAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMG 334
YAIMI+ALVQ+DR EECF L+ MINSG LPDVSTYK+V+EGMCLAGKVEEAYKFLEEMG
Sbjct: 449 YAIMILALVQSDRTEECFKLIKDMINSGVLPDVSTYKQVIEGMCLAGKVEEAYKFLEEMG 508
Query: 335 NKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPD 394
NKGY PDIVTYNCFL VLC+NK +EAL LYGRMIE GC PSV T+NMLISM+FE+GEPD
Sbjct: 509 NKGYRPDIVTYNCFLDVLCENKKSEEALGLYGRMIEAGCVPSVHTFNMLISMFFEIGEPD 568
Query: 395 GAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYL 454
GAFETWHEMDKRGCA+D DTYCVMI+GLF+C+K+E+ACFLL+EVVNKG+KLPYRKFD +L
Sbjct: 569 GAFETWHEMDKRGCARDTDTYCVMIEGLFNCNKMEDACFLLDEVVNKGIKLPYRKFDCFL 628
Query: 455 MQLSVIGDLGAIHKLSDHMRKFYNPVIARRLALNQKRVRISLREK 499
MQLS+IGDL AIHKLS+HMRKFYNP +ARR ALNQKR +SLR K
Sbjct: 629 MQLSMIGDLQAIHKLSEHMRKFYNPAMARRFALNQKRRSMSLRGK 673
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|334183891|ref|NP_177483.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] gi|193806278|sp|Q9FX35.2|PP117_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g73400, mitochondrial; Flags: Precursor gi|332197336|gb|AEE35457.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 665 bits (1716), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 314/474 (66%), Positives = 379/474 (79%), Gaps = 25/474 (5%)
Query: 51 VAKLYEAIIDNSNAYDNMEKALDSLGVPLTTDSVVGVLQRFQFEEKIAFRFFMWAGHQDN 110
V L+EAI+ N NAYD+MEKALD V LTT V +LQR Q+EEK AFRFF WAGHQ++
Sbjct: 95 VGILHEAIMANLNAYDDMEKALDESSVDLTTPVVCKILQRLQYEEKTAFRFFTWAGHQEH 154
Query: 111 YAHEPLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLMILKQYTEK-- 168
Y+HEP+AYN MIDILSSTKYK KQFR+V MLDYMKRNNK V VDVLL IL++Y E+
Sbjct: 155 YSHEPIAYNEMIDILSSTKYKNKQFRIVIDMLDYMKRNNKTVVLVDVLLEILRKYCERYL 214
Query: 169 -----------IKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNIL 217
I+VKTQPEINA N+LLDALCKCGLV E + +R++++VKP+ANT+N+L
Sbjct: 215 THVQKFAKRKRIRVKTQPEINAFNMLLDALCKCGLVKEGEALLRRMRHRVKPDANTFNVL 274
Query: 218 ------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGS 265
M+ LEEMI+ GH P+NFTY AIDTFC+A MV EAADLF+FM TKGS
Sbjct: 275 FFGWCRVRDPKKAMKLLEEMIEAGHKPENFTYCAAIDTFCQAGMVDEAADLFDFMITKGS 334
Query: 266 TISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEE 325
+S+PTAKT+A+MIVAL +ND+ EECF L+G MI++GCLPDVSTYK+V+EGMC+A KV+E
Sbjct: 335 AVSAPTAKTFALMIVALAKNDKAEECFELIGRMISTGCLPDVSTYKDVIEGMCMAEKVDE 394
Query: 326 AYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLIS 385
AYKFL+EM NKGYPPDIVTYNCFL+VLC+N+ DEAL+LYGRM+E C PSVQTYNMLIS
Sbjct: 395 AYKFLDEMSNKGYPPDIVTYNCFLRVLCENRKTDEALKLYGRMVESRCAPSVQTYNMLIS 454
Query: 386 MYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKL 445
M+FE+ +PDGAF TW EMDKR C QDV+TYC MI+GLFDC + +EACFLLEEVVNKGLKL
Sbjct: 455 MFFEMDDPDGAFNTWTEMDKRDCVQDVETYCAMINGLFDCHRAKEACFLLEEVVNKGLKL 514
Query: 446 PYRKFDSYLMQLSVIGDLGAIHKLSDHMRKFYNPVIARRLALNQKRVRISLREK 499
PYR FDS+LM+LS +G+L AIHK+S+HM+KFYN +ARR AL++KR LR K
Sbjct: 515 PYRVFDSFLMRLSEVGNLKAIHKVSEHMKKFYNHSMARRFALSEKRKSTKLRGK 568
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297839201|ref|XP_002887482.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297333323|gb|EFH63741.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 662 bits (1708), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 310/464 (66%), Positives = 372/464 (80%), Gaps = 25/464 (5%)
Query: 61 NSNAYDNMEKALDSLGVPLTTDSVVGVLQRFQFEEKIAFRFFMWAGHQDNYAHEPLAYNL 120
N NAYD+MEKALD V LTT V +LQR Q+EEK AFRFF WAGHQ++Y+HEP+AYN
Sbjct: 3 NLNAYDDMEKALDDSVVDLTTPVVCKILQRLQYEEKTAFRFFTWAGHQEHYSHEPIAYNE 62
Query: 121 MIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLMILKQYTEK------------ 168
MIDILSSTKYK KQFR+V MLDYMKRN K VP D+LL IL++Y E+
Sbjct: 63 MIDILSSTKYKNKQFRIVIDMLDYMKRNKKTVVPADILLEILRKYCERYLTHVQKFAKRK 122
Query: 169 -IKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNIL---------- 217
I+VKTQPEINA N+LLDALCKCGLV E + +R++++VKP+A T+N+L
Sbjct: 123 RIRVKTQPEINAFNMLLDALCKCGLVKEGEALLRRMRHRVKPDATTFNVLFFGWCRVRDP 182
Query: 218 --GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTY 275
M+ LEEMIQ GH P+NFTY AIDTFC+A MV EAADLFEFM TKGS +S+PTAKT+
Sbjct: 183 KKAMKLLEEMIQAGHKPENFTYCAAIDTFCQAGMVDEAADLFEFMITKGSVVSAPTAKTF 242
Query: 276 AIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGN 335
A+MIVAL +ND+ EECF L+G MI++GCLPDVSTYK+V+EGMC+AGKVEEAYKFL+EM N
Sbjct: 243 ALMIVALAKNDKAEECFELIGRMISTGCLPDVSTYKDVIEGMCMAGKVEEAYKFLDEMSN 302
Query: 336 KGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDG 395
KGYPPDIVTYNCFL+VLC+N+ DEAL+LYGRM+E C PSVQTYNMLISM+FE+ +PDG
Sbjct: 303 KGYPPDIVTYNCFLRVLCENRKSDEALKLYGRMVESRCAPSVQTYNMLISMFFEMDDPDG 362
Query: 396 AFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLM 455
AF TW EMD+R C QD++TYCVMI+GLFDC + +EACFLLEEVVNKGLKLPYR FDS+LM
Sbjct: 363 AFNTWKEMDERDCVQDIETYCVMINGLFDCHRAKEACFLLEEVVNKGLKLPYRAFDSFLM 422
Query: 456 QLSVIGDLGAIHKLSDHMRKFYNPVIARRLALNQKRVRISLREK 499
+LS +G+L AIHKLS+HM+KFYN +ARR AL++KR LR K
Sbjct: 423 RLSTVGNLKAIHKLSEHMKKFYNHSMARRFALSEKRKSTKLRGK 466
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|11120809|gb|AAG30989.1|AC012396_25 hypothetical protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 654 bits (1687), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 309/464 (66%), Positives = 372/464 (80%), Gaps = 25/464 (5%)
Query: 61 NSNAYDNMEKALDSLGVPLTTDSVVGVLQRFQFEEKIAFRFFMWAGHQDNYAHEPLAYNL 120
N NAYD+MEKALD V LTT V +LQR Q+EEK AFRFF WAGHQ++Y+HEP+AYN
Sbjct: 3 NLNAYDDMEKALDESSVDLTTPVVCKILQRLQYEEKTAFRFFTWAGHQEHYSHEPIAYNE 62
Query: 121 MIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLMILKQYTEK------------ 168
MIDILSSTKYK KQFR+V MLDYMKRNNK V VDVLL IL++Y E+
Sbjct: 63 MIDILSSTKYKNKQFRIVIDMLDYMKRNNKTVVLVDVLLEILRKYCERYLTHVQKFAKRK 122
Query: 169 -IKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNIL---------- 217
I+VKTQPEINA N+LLDALCKCGLV E + +R++++VKP+ANT+N+L
Sbjct: 123 RIRVKTQPEINAFNMLLDALCKCGLVKEGEALLRRMRHRVKPDANTFNVLFFGWCRVRDP 182
Query: 218 --GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTY 275
M+ LEEMI+ GH P+NFTY AIDTFC+A MV EAADLF+FM TKGS +S+PTAKT+
Sbjct: 183 KKAMKLLEEMIEAGHKPENFTYCAAIDTFCQAGMVDEAADLFDFMITKGSAVSAPTAKTF 242
Query: 276 AIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGN 335
A+MIVAL +ND+ EECF L+G MI++GCLPDVSTYK+V+EGMC+A KV+EAYKFL+EM N
Sbjct: 243 ALMIVALAKNDKAEECFELIGRMISTGCLPDVSTYKDVIEGMCMAEKVDEAYKFLDEMSN 302
Query: 336 KGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDG 395
KGYPPDIVTYNCFL+VLC+N+ DEAL+LYGRM+E C PSVQTYNMLISM+FE+ +PDG
Sbjct: 303 KGYPPDIVTYNCFLRVLCENRKTDEALKLYGRMVESRCAPSVQTYNMLISMFFEMDDPDG 362
Query: 396 AFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLM 455
AF TW EMDKR C QDV+TYC MI+GLFDC + +EACFLLEEVVNKGLKLPYR FDS+LM
Sbjct: 363 AFNTWTEMDKRDCVQDVETYCAMINGLFDCHRAKEACFLLEEVVNKGLKLPYRVFDSFLM 422
Query: 456 QLSVIGDLGAIHKLSDHMRKFYNPVIARRLALNQKRVRISLREK 499
+LS +G+L AIHK+S+HM+KFYN +ARR AL++KR LR K
Sbjct: 423 RLSEVGNLKAIHKVSEHMKKFYNHSMARRFALSEKRKSTKLRGK 466
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449442339|ref|XP_004138939.1| PREDICTED: pentatricopeptide repeat-containing protein At1g73400, mitochondrial-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 642 bits (1655), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 315/476 (66%), Positives = 378/476 (79%), Gaps = 25/476 (5%)
Query: 49 SDVAKLYEAIIDNSNAYDNMEKALDSLGVPLTTDSVVGVLQRFQFEEKIAFRFFMWAGHQ 108
++ KL+ AI+DNS A+ +ME ALD +GV LTTD V +L R +F+EK+AFRFF WA Q
Sbjct: 84 TNADKLHRAIVDNSYAHHDMEGALDQVGVYLTTDLVADILHRLRFDEKLAFRFFTWAARQ 143
Query: 109 DNYAHEPLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLMILKQYTEK 168
+NY+HEP YN MIDILSST+YK KQFR+VC +LDYMKRN+K VPV+VL IL+ YT+K
Sbjct: 144 ENYSHEPRVYNEMIDILSSTRYKVKQFRIVCDLLDYMKRNDKNTVPVEVLFGILRNYTDK 203
Query: 169 -------------IKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYN 215
+ VK QPEINA NLLLDALCKC LV+ AE + K+VK K+KP+ANTYN
Sbjct: 204 YLTCLQKFAKKKKVIVKRQPEINAFNLLLDALCKCSLVEDAEALLKKVKKKLKPDANTYN 263
Query: 216 IL------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTK 263
I+ GM+ LEEMI++G PDNFTYNTAI +FCKA M+ EA +LFEFMRTK
Sbjct: 264 IMFFGWCRVRNPGRGMRVLEEMIELGFDPDNFTYNTAIASFCKAGMLKEACELFEFMRTK 323
Query: 264 GSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKV 323
GS +SSPTAKTYAIMIVALV N RMEECF L +MI SGCLPDVSTYKE++EG+C+AGKV
Sbjct: 324 GSALSSPTAKTYAIMIVALVNNGRMEECFKFLEYMIKSGCLPDVSTYKEMIEGICVAGKV 383
Query: 324 EEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNML 383
+EAY FLEEMG KGYPPDIVTYNCFLKVLCDNK D+ALR RMIEVGC PSVQTYNML
Sbjct: 384 QEAYMFLEEMGKKGYPPDIVTYNCFLKVLCDNKMSDDALRHCDRMIEVGCLPSVQTYNML 443
Query: 384 ISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443
ISM+FE+ + +GAF+ W EMD+ GC +DVD+YC+MI+GLF C+KV +AC LLEEVVNKG+
Sbjct: 444 ISMFFEMNDHNGAFQIWLEMDRYGCTRDVDSYCIMIEGLFGCNKVGDACLLLEEVVNKGM 503
Query: 444 KLPYRKFDSYLMQLSVIGDLGAIHKLSDHMRKFYNPVIARRLALNQKRVRISLREK 499
KLP+RKFDS+LMQLSV G+L IH+LS+HMRKFYN +ARR +LNQKR+ +SLR K
Sbjct: 504 KLPFRKFDSFLMQLSVNGNLKGIHRLSEHMRKFYNRAMARRFSLNQKRMSVSLRGK 559
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 499 | ||||||
| TAIR|locus:2096099 | 599 | AT3G62470 "AT3G62470" [Arabido | 0.751 | 0.626 | 0.320 | 5.8e-50 | |
| TAIR|locus:2185455 | 598 | AT5G14820 "AT5G14820" [Arabido | 0.751 | 0.627 | 0.315 | 1.1e-48 | |
| TAIR|locus:2096074 | 599 | AT3G62540 "AT3G62540" [Arabido | 0.751 | 0.626 | 0.315 | 2.3e-48 | |
| TAIR|locus:2009620 | 471 | AT1G53330 [Arabidopsis thalian | 0.621 | 0.658 | 0.292 | 1.3e-36 | |
| TAIR|locus:2024296 | 598 | AT1G09900 "AT1G09900" [Arabido | 0.591 | 0.493 | 0.298 | 1.3e-34 | |
| TAIR|locus:2026207 | 548 | AT1G62680 [Arabidopsis thalian | 0.591 | 0.538 | 0.312 | 4.2e-33 | |
| TAIR|locus:2083976 | 754 | MEE40 "maternal effect embryo | 0.565 | 0.374 | 0.314 | 5.7e-33 | |
| TAIR|locus:2077637 | 871 | AT3G06920 "AT3G06920" [Arabido | 0.555 | 0.318 | 0.307 | 1.1e-30 | |
| TAIR|locus:2097395 | 638 | AT3G49730 [Arabidopsis thalian | 0.579 | 0.452 | 0.291 | 6.4e-30 | |
| TAIR|locus:2035206 | 523 | AT1G52640 [Arabidopsis thalian | 0.667 | 0.636 | 0.280 | 1e-29 |
| TAIR|locus:2096099 AT3G62470 "AT3G62470" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 520 (188.1 bits), Expect = 5.8e-50, P = 5.8e-50
Identities = 132/412 (32%), Positives = 207/412 (50%)
Query: 67 NMEKALDSLGVPLTTDSVVGVLQRFQFEEKIAFRFFMWAGHQDNYAHEPLAYNLMIDILS 126
NME LD + + L+ D +V VL+RF+ K AFRFF WA + +AH+ YN M+ IL+
Sbjct: 147 NMEAVLDEMKLDLSHDLIVEVLERFRHARKPAFRFFCWAAERQGFAHDSRTYNSMMSILA 206
Query: 127 STKYKAKQFRLVCSM-------LDYMKRNNKVFVPVDV------LLMILKQYTEKIKVKT 173
T+ ++ M ++ K F + ++K+Y KI V+T
Sbjct: 207 KTRQFETMVSVLEEMGTKGLLTMETFTIAMKAFAAAKERKKAVGIFELMKKYKFKIGVET 266
Query: 174 QPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNIL--G---MQTLEE---- 224
+N LLD+L + L A+ + ++K + PN TY +L G ++ L E
Sbjct: 267 ------INCLLDSLGRAKLGKEAQVLFDKLKERFTPNMMTYTVLLNGWCRVRNLIEAARI 320
Query: 225 ---MIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVA 281
MI G PD +N ++ ++R ++A LF M++KG P ++Y IMI
Sbjct: 321 WNDMIDQGLKPDIVAHNVMLEGLLRSRKKSDAIKLFHVMKSKGPC---PNVRSYTIMIRD 377
Query: 282 LVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPD 341
+ ME M++SG PD + Y ++ G K++ Y+ L+EM KG+PPD
Sbjct: 378 FCKQSSMETAIEYFDDMVDSGLQPDAAVYTCLITGFGTQKKLDTVYELLKEMQEKGHPPD 437
Query: 342 IVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWH 401
TYN +K++ + K + A R+Y +MI+ PS+ T+NM++ YF + W
Sbjct: 438 GKTYNALIKLMANQKMPEHATRIYNKMIQNEIEPSIHTFNMIMKSYFMARNYEMGRAVWE 497
Query: 402 EMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLP---YRKF 450
EM K+G D ++Y V+I GL K EAC LEE+++KG+K P Y KF
Sbjct: 498 EMIKKGICPDDNSYTVLIRGLIGEGKSREACRYLEEMLDKGMKTPLIDYNKF 549
|
|
| TAIR|locus:2185455 AT5G14820 "AT5G14820" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 508 (183.9 bits), Expect = 1.1e-48, P = 1.1e-48
Identities = 130/412 (31%), Positives = 205/412 (49%)
Query: 67 NMEKALDSLGVPLTTDSVVGVLQRFQFEEKIAFRFFMWAGHQDNYAHEPLAYNLMIDILS 126
NME LD + + L+ D +V VL+RF+ K AFRFF WA + +AH+ YN M+ IL+
Sbjct: 146 NMEAVLDEMKLDLSHDLIVEVLERFRHARKPAFRFFCWAAERQGFAHDSRTYNSMMSILA 205
Query: 127 STKYKAKQFRLVCSM-------LDYMKRNNKVFVPVDV------LLMILKQYTEKIKVKT 173
T+ ++ M ++ K F + ++K+Y KI V+T
Sbjct: 206 KTRQFETMVSVLEEMGTKGLLTMETFTIAMKAFAAAKERKKAVGIFELMKKYKFKIGVET 265
Query: 174 QPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNIL--G---MQTLEE---- 224
+N LLD+L + L A+ + ++K + PN TY +L G ++ L E
Sbjct: 266 ------INCLLDSLGRAKLGKEAQVLFDKLKERFTPNMMTYTVLLNGWCRVRNLIEAARI 319
Query: 225 ---MIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVA 281
MI G PD +N ++ ++ ++A LF M++KG P ++Y IMI
Sbjct: 320 WNDMIDHGLKPDIVAHNVMLEGLLRSMKKSDAIKLFHVMKSKGPC---PNVRSYTIMIRD 376
Query: 282 LVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPD 341
+ ME M++SG PD + Y ++ G K++ Y+ L+EM KG+PPD
Sbjct: 377 FCKQSSMETAIEYFDDMVDSGLQPDAAVYTCLITGFGTQKKLDTVYELLKEMQEKGHPPD 436
Query: 342 IVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWH 401
TYN +K++ + K + R+Y +MI+ PS+ T+NM++ YF + W
Sbjct: 437 GKTYNALIKLMANQKMPEHGTRIYNKMIQNEIEPSIHTFNMIMKSYFVARNYEMGRAVWD 496
Query: 402 EMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLP---YRKF 450
EM K+G D ++Y V+I GL K EAC LEE+++KG+K P Y KF
Sbjct: 497 EMIKKGICPDDNSYTVLIRGLISEGKSREACRYLEEMLDKGMKTPLIDYNKF 548
|
|
| TAIR|locus:2096074 AT3G62540 "AT3G62540" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 505 (182.8 bits), Expect = 2.3e-48, P = 2.3e-48
Identities = 130/412 (31%), Positives = 204/412 (49%)
Query: 67 NMEKALDSLGVPLTTDSVVGVLQRFQFEEKIAFRFFMWAGHQDNYAHEPLAYNLMIDILS 126
NME LD + + L+ D +V VL+RF+ K AFRFF WA + +AH YN M+ IL+
Sbjct: 147 NMEAVLDEMKLDLSHDLIVEVLERFRHARKPAFRFFCWAAERQGFAHASRTYNSMMSILA 206
Query: 127 STKYKAKQFRLVCSM-------LDYMKRNNKVFVPVDV------LLMILKQYTEKIKVKT 173
T+ ++ M ++ K F + ++K+Y KI V+T
Sbjct: 207 KTRQFETMVSVLEEMGTKGLLTMETFTIAMKAFAAAKERKKAVGIFELMKKYKFKIGVET 266
Query: 174 QPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNIL--G---MQTLEE---- 224
+N LLD+L + L A+ + ++K + PN TY +L G ++ L E
Sbjct: 267 ------INCLLDSLGRAKLGKEAQVLFDKLKERFTPNMMTYTVLLNGWCRVRNLIEAARI 320
Query: 225 ---MIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVA 281
MI G PD +N ++ ++ ++A LF M++KG P ++Y IMI
Sbjct: 321 WNDMIDHGLKPDIVAHNVMLEGLLRSMKKSDAIKLFHVMKSKGPC---PNVRSYTIMIRD 377
Query: 282 LVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPD 341
+ ME M++SG PD + Y ++ G K++ Y+ L+EM KG+PPD
Sbjct: 378 FCKQSSMETAIEYFDDMVDSGLQPDAAVYTCLITGFGTQKKLDTVYELLKEMQEKGHPPD 437
Query: 342 IVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWH 401
TYN +K++ + K + R+Y +MI+ PS+ T+NM++ YF + W
Sbjct: 438 GKTYNALIKLMANQKMPEHGTRIYNKMIQNEIEPSIHTFNMIMKSYFVARNYEMGRAVWD 497
Query: 402 EMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLP---YRKF 450
EM K+G D ++Y V+I GL K EAC LEE+++KG+K P Y KF
Sbjct: 498 EMIKKGICPDDNSYTVLIRGLISEGKSREACRYLEEMLDKGMKTPLIDYNKF 549
|
|
| TAIR|locus:2009620 AT1G53330 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 373 (136.4 bits), Expect = 1.3e-36, Sum P(2) = 1.3e-36
Identities = 96/328 (29%), Positives = 157/328 (47%)
Query: 162 LKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNIL---- 217
L + E + + Q + +LN LL AL KCG ++ + + KP+A TYNIL
Sbjct: 103 LHMFDEMPQYRCQRTVKSLNSLLSALLKCGELEKMKERLSSIDEFGKPDACTYNILIHGC 162
Query: 218 --------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADL-FEFMRTKGSTIS 268
++ +EM++ P T+ T I CK V EA + + ++ G
Sbjct: 163 SQSGCFDDALKLFDEMVKKKVKPTGVTFGTLIHGLCKDSRVKEALKMKHDMLKVYGVR-- 220
Query: 269 SPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYK 328
PT YA +I AL Q + F L D + Y ++ + AG+ E
Sbjct: 221 -PTVHIYASLIKALCQIGELSFAFKLKDEAYEGKIKVDAAIYSTLISSLIKAGRSNEVSM 279
Query: 329 FLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYF 388
LEEM KG PD VTYN + C + + A R+ M+E G P V +YNM++ ++F
Sbjct: 280 ILEEMSEKGCKPDTVTYNVLINGFCVENDSESANRVLDEMVEKGLKPDVISYNMILGVFF 339
Query: 389 ELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYR 448
+ + + A + +M +RGC+ D +Y ++ DGL + + EEA +L+E++ KG K P R
Sbjct: 340 RIKKWEEATYLFEDMPRRGCSPDTLSYRIVFDGLCEGLQFEEAAVILDEMLFKGYK-PRR 398
Query: 449 -KFDSYLMQLSVIGDLGAIHKLSDHMRK 475
+ + +L +L G L + K+ + +
Sbjct: 399 DRLEGFLQKLCESGKLEILSKVISSLHR 426
|
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| TAIR|locus:2024296 AT1G09900 "AT1G09900" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 379 (138.5 bits), Expect = 1.3e-34, P = 1.3e-34
Identities = 93/312 (29%), Positives = 152/312 (48%)
Query: 175 PEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNIL------------GMQTL 222
P++ N+++ CK G ++ A ++ R+ V P+ TYN + M+ L
Sbjct: 170 PDVITYNVMISGYCKAGEINNALSVLDRMS--VSPDVVTYNTILRSLCDSGKLKQAMEVL 227
Query: 223 EEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVAL 282
+ M+Q PD TY I+ C+ V A L + MR +G T P TY +++ +
Sbjct: 228 DRMLQRDCYPDVITYTILIEATCRDSGVGHAMKLLDEMRDRGCT---PDVVTYNVLVNGI 284
Query: 283 VQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDI 342
+ R++E L M +SGC P+V T+ +L MC G+ +A K L +M KG+ P +
Sbjct: 285 CKEGRLDEAIKFLNDMPSSGCQPNVITHNIILRSMCSTGRWMDAEKLLADMLRKGFSPSV 344
Query: 343 VTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHE 402
VT+N + LC A+ + +M + GC P+ +YN L+ + + + D A E
Sbjct: 345 VTFNILINFLCRKGLLGRAIDILEKMPQHGCQPNSLSYNPLLHGFCKEKKMDRAIEYLER 404
Query: 403 MDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGD 462
M RGC D+ TY M+ L KVE+A +L ++ +KG +++ + L+ G
Sbjct: 405 MVSRGCYPDIVTYNTMLTALCKDGKVEDAVEILNQLSSKGCSPVLITYNTVIDGLAKAGK 464
Query: 463 LGAIHKLSDHMR 474
G KL D MR
Sbjct: 465 TGKAIKLLDEMR 476
|
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| TAIR|locus:2026207 AT1G62680 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 363 (132.8 bits), Expect = 4.2e-33, P = 4.2e-33
Identities = 98/314 (31%), Positives = 158/314 (50%)
Query: 169 IKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL--GM------ 219
+++ +P+I A N ++D+LCK V+ A K ++ K ++PN TY L G+
Sbjct: 182 VEIGYKPDIVAYNAIIDSLCKTKRVNDAFDFFKEIERKGIRPNVVTYTALVNGLCNSSRW 241
Query: 220 ----QTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTY 275
+ L +MI+ P+ TY+ +D F K V EA +LFE M + S P TY
Sbjct: 242 SDAARLLSDMIKKKITPNVITYSALLDAFVKNGKVLEAKELFEEM-VRMSI--DPDIVTY 298
Query: 276 AIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGN 335
+ +I L +DR++E + M++ GCL DV +Y ++ G C A +VE+ K EM
Sbjct: 299 SSLINGLCLHDRIDEANQMFDLMVSKGCLADVVSYNTLINGFCKAKRVEDGMKLFREMSQ 358
Query: 336 KGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDG 395
+G + VTYN ++ + D+A + +M G P + TYN+L+ + GE +
Sbjct: 359 RGLVSNTVTYNTLIQGFFQAGDVDKAQEFFSQMDFFGISPDIWTYNILLGGLCDNGELEK 418
Query: 396 AFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLM 455
A + +M KR D+ TY +I G+ KVEEA L + KGLK P +Y
Sbjct: 419 ALVIFEDMQKREMDLDIVTYTTVIRGMCKTGKVEEAWSLFCSLSLKGLK-P--DIVTYTT 475
Query: 456 QLSVIGDLGAIHKL 469
+S + G +H++
Sbjct: 476 MMSGLCTKGLLHEV 489
|
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| TAIR|locus:2083976 MEE40 "maternal effect embryo arrest 40" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 368 (134.6 bits), Expect = 5.7e-33, P = 5.7e-33
Identities = 94/299 (31%), Positives = 154/299 (51%)
Query: 179 ALNLLLDALCKCGLVDYAETICKRVKNK--VKPNANTYNIL--GM----------QTLEE 224
++N+++ CK G V+ A + + N+ P+ T+N L G+ + ++
Sbjct: 261 SVNVIVHGFCKEGRVEDALNFIQEMSNQDGFFPDQYTFNTLVNGLCKAGHVKHAIEIMDV 320
Query: 225 MIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQ 284
M+Q G+ PD +TYN+ I CK V EA ++ + M T+ SP TY +I L +
Sbjct: 321 MLQEGYDPDVYTYNSVISGLCKLGEVKEAVEVLDQMITRDC---SPNTVTYNTLISTLCK 377
Query: 285 NDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVT 344
+++EE L + + G LPDV T+ +++G+CL A + EEM +KG PD T
Sbjct: 378 ENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTRNHRVAMELFEEMRSKGCEPDEFT 437
Query: 345 YNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMD 404
YN + LC DEAL + +M GC SV TYN LI + + + A E + EM+
Sbjct: 438 YNMLIDSLCSKGKLDEALNMLKQMELSGCARSVITYNTLIDGFCKANKTREAEEIFDEME 497
Query: 405 KRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDL 463
G +++ TY +IDGL +VE+A L+++++ +G K ++S L GD+
Sbjct: 498 VHGVSRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGQKPDKYTYNSLLTHFCRGGDI 556
|
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| TAIR|locus:2077637 AT3G06920 "AT3G06920" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 337 (123.7 bits), Expect = 1.1e-30, Sum P(2) = 1.1e-30
Identities = 90/293 (30%), Positives = 140/293 (47%)
Query: 163 KQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVK-NKVKPNANTYNIL--GM 219
K Y + I P++ LN +D + K G + + + +K + P+A +Y+IL G+
Sbjct: 503 KIYKDMINQNCSPDLQLLNTYMDCMFKAGEPEKGRAMFEEIKARRFVPDARSYSILIHGL 562
Query: 220 -------QTLE---EMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISS 269
+T E M + G D YN ID FCK V +A L E M+TKG
Sbjct: 563 IKAGFANETYELFYSMKEQGCVLDTRAYNIVIDGFCKCGKVNKAYQLLEEMKTKGF---E 619
Query: 270 PTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKF 329
PT TY +I L + DR++E + L + +V Y +++G G+++EAY
Sbjct: 620 PTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKRIELNVVIYSSLIDGFGKVGRIDEAYLI 679
Query: 330 LEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFE 389
LEE+ KG P++ T+N L L + +EAL + M E+ C P+ TY +LI+ +
Sbjct: 680 LEELMQKGLTPNLYTWNSLLDALVKAEEINEALVCFQSMKELKCTPNQVTYGILINGLCK 739
Query: 390 LGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKG 442
+ + + AF W EM K+G +Y MI GL + EA L + G
Sbjct: 740 VRKFNKAFVFWQEMQKQGMKPSTISYTTMISGLAKAGNIAEAGALFDRFKANG 792
|
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| TAIR|locus:2097395 AT3G49730 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 349 (127.9 bits), Expect = 6.4e-30, P = 6.4e-30
Identities = 89/305 (29%), Positives = 145/305 (47%)
Query: 152 FVPVDVLLMILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNA 211
F +++ ++ E K +P+ LLDALCK G V A + + ++ K PN
Sbjct: 177 FASANMVKKAVEVLDEMPKYGLEPDEYVFGCLLDALCKNGSVKEASKVFEDMREKFPPNL 236
Query: 212 NTYNIL--G-------MQTLEEMIQMGHA---PDNFTYNTAIDTFCKARMVTEAADLFEF 259
+ L G M+ E ++QM A PD + + + A + +A DL
Sbjct: 237 RYFTSLLYGWCREGKLMEAKEVLVQMKEAGLEPDIVVFTNLLSGYAHAGKMADAYDLMND 296
Query: 260 MRTKGSTISSPTAKTYAIMIVALVQND-RMEECFSLLGHMINSGCLPDVSTYKEVLEGMC 318
MR +G P Y ++I AL + + RM+E + M GC D+ TY ++ G C
Sbjct: 297 MRKRGF---EPNVNCYTVLIQALCRTEKRMDEAMRVFVEMERYGCEADIVTYTALISGFC 353
Query: 319 LAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQ 378
G +++ Y L++M KG P VTY + + +E L L +M GC P +
Sbjct: 354 KWGMIDKGYSVLDDMRKKGVMPSQVTYMQIMVAHEKKEQFEECLELIEKMKRRGCHPDLL 413
Query: 379 TYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEV 438
YN++I + +LGE A W+EM+ G + VDT+ +MI+G + EAC +E+
Sbjct: 414 IYNVVIRLACKLGEVKEAVRLWNEMEANGLSPGVDTFVIMINGFTSQGFLIEACNHFKEM 473
Query: 439 VNKGL 443
V++G+
Sbjct: 474 VSRGI 478
|
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| TAIR|locus:2035206 AT1G52640 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 344 (126.2 bits), Expect = 1.0e-29, P = 1.0e-29
Identities = 99/353 (28%), Positives = 162/353 (45%)
Query: 163 KQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKN-KVKPNANTYNIL---- 217
+ + ++ +P ++ L+ LL +LC V++A+ + K + P+A TY+IL
Sbjct: 159 RAFNRMVEFGIKPCVDDLDQLLHSLCDKKHVNHAQEFFGKAKGFGIVPSAKTYSILVRGW 218
Query: 218 --------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISS 269
+ +EM++ D YN +D CK+ V +F+ M G
Sbjct: 219 ARIRDASGARKVFDEMLERNCVVDLLAYNALLDALCKSGDVDGGYKMFQEMGNLGL---K 275
Query: 270 PTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKF 329
P A ++AI I A + + +L M +P+V T+ +++ +C KV++AY
Sbjct: 276 PDAYSFAIFIHAYCDAGDVHSAYKVLDRMKRYDLVPNVYTFNHIIKTLCKNEKVDDAYLL 335
Query: 330 LEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFE 389
L+EM KG PD TYN + CD+ + A +L RM C P TYNM++ +
Sbjct: 336 LDEMIQKGANPDTWTYNSIMAYHCDHCEVNRATKLLSRMDRTKCLPDRHTYNMVLKLLIR 395
Query: 390 LGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLF-DCSKVEEACFLLEEVVNKGLKLPYR 448
+G D A E W M +R V TY VMI GL K+EEAC E ++++G+ PY
Sbjct: 396 IGRFDRATEIWEGMSERKFYPTVATYTVMIHGLVRKKGKLEEACRYFEMMIDEGIP-PYS 454
Query: 449 KFDSYLMQLSV-IGDLGAIHKLSDHMRKFYN-PVIARRLALNQKRVRISLREK 499
L V G + + L+ M + + V + + KR R+ R +
Sbjct: 455 TTVEMLRNRLVGWGQMDVVDVLAGKMERSSSCSVQDMAVEMRGKRRRLGRRSE 507
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q9FX35 | PP117_ARATH | No assigned EC number | 0.6624 | 0.8997 | 0.7904 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
| Your Input: |  |
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 | eugene3.00100915 | hypothetical protein (472 aa) | |||||||||
(Populus trichocarpa) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 499 | |||
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 2e-13 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 1e-12 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-12 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 3e-12 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 9e-12 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 4e-09 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 1e-08 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 4e-08 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 5e-08 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 3e-07 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 6e-07 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 6e-07 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 3e-06 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-05 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 4e-05 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 6e-05 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 9e-05 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 2e-04 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 2e-04 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 2e-04 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 3e-04 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 3e-04 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 0.001 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 0.001 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 0.001 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 0.001 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 0.002 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 0.003 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 72.6 bits (178), Expect = 2e-13
Identities = 53/231 (22%), Positives = 94/231 (40%), Gaps = 23/231 (9%)
Query: 206 KVKPNANTYNIL------------GMQTLEEMIQMGHA--PDNFTYNTAIDTFCKARMVT 251
VKP+ +N L L EM H PD+ T + A V
Sbjct: 537 NVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVD 596
Query: 252 EAADLFEFMR---TKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVS 308
A ++++ + KG T + Y I + + Q + S+ M G PD
Sbjct: 597 RAKEVYQMIHEYNIKG------TPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEV 650
Query: 309 TYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRM 368
+ +++ AG +++A++ L++ +G V+Y+ + + KN +AL LY +
Sbjct: 651 FFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDI 710
Query: 369 IEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMI 419
+ P+V T N LI+ E + A E EM + G + TY +++
Sbjct: 711 KSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILL 761
|
Length = 1060 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 62.0 bits (152), Expect = 1e-12
Identities = 22/50 (44%), Positives = 30/50 (60%)
Query: 305 PDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCD 354
PDV TY +++G C GKVEEA K EM +G P++ TY+ + LC
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 61.3 bits (150), Expect = 2e-12
Identities = 22/48 (45%), Positives = 31/48 (64%)
Query: 375 PSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGL 422
P V TYN LI Y + G+ + A + ++EM KRG +V TY ++IDGL
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 69.1 bits (169), Expect = 3e-12
Identities = 43/147 (29%), Positives = 71/147 (48%), Gaps = 8/147 (5%)
Query: 282 LVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLA-GKVEEAYKFLEEMGNKGYPP 340
L+++ R+++C LL M G L Y C V+EA++F + + N P
Sbjct: 380 LLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----P 435
Query: 341 DIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETW 400
+ T+N + V +++ D ALR+ + E G + Y LIS + G+ D FE +
Sbjct: 436 TLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVF 495
Query: 401 HEMDKRGCAQDVDTYCVMIDGLFDCSK 427
HEM G +V T+ +IDG C++
Sbjct: 496 HEMVNAGVEANVHTFGALIDG---CAR 519
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Length = 1060 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 59.3 bits (145), Expect = 9e-12
Identities = 19/48 (39%), Positives = 28/48 (58%)
Query: 340 PDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMY 387
PD+VTYN + C +EAL+L+ M + G P+V TY++LI
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 58.7 bits (142), Expect = 4e-09
Identities = 58/273 (21%), Positives = 111/273 (40%), Gaps = 21/273 (7%)
Query: 188 CKC-GLVDYAETICKRVKNKVKPNANTYNIL------------GMQTLEEMIQMGHAPDN 234
CK V A K ++N P +T+N+L ++ L + + G D
Sbjct: 416 CKKQRAVKEAFRFAKLIRN---PTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADC 472
Query: 235 FTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSL 294
Y T I T K+ V ++F M G T+ +I + ++ + F
Sbjct: 473 KLYTTLISTCAKSGKVDAMFEVFHEMVNAGV---EANVHTFGALIDGCARAGQVAKAFGA 529
Query: 295 LGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYP--PDIVTYNCFLKVL 352
G M + PD + ++ +G V+ A+ L EM + +P PD +T +K
Sbjct: 530 YGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKAC 589
Query: 353 CDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDV 412
+ D A +Y + E + + Y + ++ + G+ D A + +M K+G D
Sbjct: 590 ANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDE 649
Query: 413 DTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKL 445
+ ++D +++A +L++ +G+KL
Sbjct: 650 VFFSALVDVAGHAGDLDKAFEILQDARKQGIKL 682
|
Length = 1060 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 57.6 bits (139), Expect = 1e-08
Identities = 41/217 (18%), Positives = 85/217 (39%), Gaps = 16/217 (7%)
Query: 183 LLDALCKCGLVDYAETICKRV-KNKVKPNANTYNI------------LGMQTLEEMIQMG 229
L+ A G VD A+ + + + + +K Y I + ++M + G
Sbjct: 585 LMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKG 644
Query: 230 HAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRME 289
PD ++ +D A + +A ++ + R +G +Y+ ++ A +
Sbjct: 645 VKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGI---KLGTVSYSSLMGACSNAKNWK 701
Query: 290 ECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFL 349
+ L + + P VST ++ +C ++ +A + L EM G P+ +TY+ L
Sbjct: 702 KALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILL 761
Query: 350 KVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISM 386
+ D L L + E G P++ + +
Sbjct: 762 VASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGL 798
|
Length = 1060 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 49.3 bits (119), Expect = 4e-08
Identities = 22/48 (45%), Positives = 27/48 (56%), Gaps = 3/48 (6%)
Query: 232 PDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMI 279
PD TYNT ID +CK V EA LF M+ +G P TY+I+I
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRG---IKPNVYTYSILI 45
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 55.2 bits (133), Expect = 5e-08
Identities = 41/164 (25%), Positives = 72/164 (43%), Gaps = 6/164 (3%)
Query: 314 LEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNG-DEALRLYGRMIEVG 372
L +C G++E+A K LE M P D Y + LC+ K +E R+ R +
Sbjct: 58 LRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFR-LCEWKRAVEEGSRVCSRALSSH 116
Query: 373 CWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEAC 432
V+ N ++SM+ GE A+ + +M +R D+ ++ V++ G +EA
Sbjct: 117 PSLGVRLGNAMLSMFVRFGELVHAWYVFGKMPER----DLFSWNVLVGGYAKAGYFDEAL 172
Query: 433 FLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHMRKF 476
L ++ G++ F L I DL ++ H+ +F
Sbjct: 173 CLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRF 216
|
Length = 857 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 53.0 bits (127), Expect = 3e-07
Identities = 41/180 (22%), Positives = 73/180 (40%), Gaps = 6/180 (3%)
Query: 252 EAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYK 311
EA +LFE + + A TY ++ A + + ++ H+ +SG PD
Sbjct: 105 EALELFEILEAGCPF--TLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMN 162
Query: 312 EVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEV 371
VL G + +A + +EM + ++ ++ + L D N EA L+ M E
Sbjct: 163 RVLLMHVKCGMLIDARRLFDEMPER----NLASWGTIIGGLVDAGNYREAFALFREMWED 218
Query: 372 GCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEA 431
G +T+ +++ LG + + K G D C +ID C +E+A
Sbjct: 219 GSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDA 278
|
Length = 697 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 45.9 bits (110), Expect = 6e-07
Identities = 15/49 (30%), Positives = 24/49 (48%)
Query: 270 PTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMC 318
P TY +I + ++EE L M G P+V TY +++G+C
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLC 49
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 45.4 bits (109), Expect = 6e-07
Identities = 16/33 (48%), Positives = 24/33 (72%)
Query: 301 SGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEM 333
G PDV TY +++G+C AG+V+EA + L+EM
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEM 33
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 43.5 bits (104), Expect = 3e-06
Identities = 16/34 (47%), Positives = 19/34 (55%)
Query: 228 MGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMR 261
G PD TYNT ID C+A V EA +L + M
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 41.2 bits (98), Expect = 2e-05
Identities = 18/66 (27%), Positives = 26/66 (39%), Gaps = 22/66 (33%)
Query: 181 NLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQTLEEMIQMGHAPDNFTYNTA 240
N L+D CK G V+ A ++ EM + G P+ +TY+
Sbjct: 7 NTLIDGYCKKGKVEEA----------------------LKLFNEMKKRGIKPNVYTYSIL 44
Query: 241 IDTFCK 246
ID CK
Sbjct: 45 IDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 46.0 bits (109), Expect = 4e-05
Identities = 40/166 (24%), Positives = 62/166 (37%), Gaps = 55/166 (33%)
Query: 181 NLLLDALCKCGLVDYA-ETICKRVKNKVKPNANTYNIL------------GMQTLEEMIQ 227
N LLD +CG ++YA K+ V ++NIL ++ M++
Sbjct: 528 NALLDLYVRCGRMNYAWNQFNSHEKDVV-----SWNILLTGYVAHGKGSMAVELFNRMVE 582
Query: 228 MGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDR 287
G PD T+ + + ++ MVT+ + F M K S P K YA ++
Sbjct: 583 SGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSIT--PNLKHYACVV-------- 632
Query: 288 MEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEM 333
LLG AGK+ EAY F+ +M
Sbjct: 633 -----DLLGR----------------------AGKLTEAYNFINKM 651
|
Length = 857 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 45.2 bits (107), Expect = 6e-05
Identities = 52/252 (20%), Positives = 92/252 (36%), Gaps = 39/252 (15%)
Query: 218 GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAI 277
G++ E + G N I+ + K + + +A ++F + K IS +
Sbjct: 408 GVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEK-DVIS------WTS 460
Query: 278 MIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLE-----GMCLAGKVEEAYKFLEE 332
+I L N+R E M+ + P+ T L G + GK A+
Sbjct: 461 IIAGLRLNNRCFEALIFFRQMLLT-LKPNSVTLIAALSACARIGALMCGKEIHAHVLRTG 519
Query: 333 MGNKGYPP-------------------------DIVTYNCFLKVLCDNKNGDEALRLYGR 367
+G G+ P D+V++N L + G A+ L+ R
Sbjct: 520 IGFDGFLPNALLDLYVRCGRMNYAWNQFNSHEKDVVSWNILLTGYVAHGKGSMAVELFNR 579
Query: 368 MIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEM-DKRGCAQDVDTYCVMIDGLFDCS 426
M+E G P T+ L+ G E +H M +K ++ Y ++D L
Sbjct: 580 MVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAG 639
Query: 427 KVEEACFLLEEV 438
K+ EA + ++
Sbjct: 640 KLTEAYNFINKM 651
|
Length = 857 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 44.9 bits (106), Expect = 9e-05
Identities = 67/316 (21%), Positives = 114/316 (36%), Gaps = 72/316 (22%)
Query: 183 LLDALCKCGLVDYAETICKRVKNKVKPNANT----YNILG-----MQTLEEMIQMGHAPD 233
L+D KCG ++ A + + K N+ Y + G + EM G + D
Sbjct: 265 LIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSID 324
Query: 234 NFTY----------------------------------NTA-IDTFCKARMVTEAADLFE 258
FT+ NTA +D + K + +A ++F+
Sbjct: 325 QFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFD 384
Query: 259 FMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMC 318
M K + IS + +I + R + + MI G P+ T+ VL
Sbjct: 385 RMPRK-NLIS------WNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACR 437
Query: 319 LAGKVEEAYKFLEEMG-NKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSV 377
+G E+ ++ + M N P + Y C +++L DEA + R P
Sbjct: 438 YSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRA------PFK 491
Query: 378 QTYNML--------ISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVE 429
T NM I ELG A E + M + ++ Y V+++ +
Sbjct: 492 PTVNMWAALLTACRIHKNLELGRL--AAEKLYGMG----PEKLNNYVVLLNLYNSSGRQA 545
Query: 430 EACFLLEEVVNKGLKL 445
EA ++E + KGL +
Sbjct: 546 EAAKVVETLKRKGLSM 561
|
Length = 697 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 38.1 bits (90), Expect = 2e-04
Identities = 15/33 (45%), Positives = 18/33 (54%)
Query: 336 KGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRM 368
KG PD+VTYN + LC DEA+ L M
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEM 33
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 38.2 bits (90), Expect = 2e-04
Identities = 13/31 (41%), Positives = 16/31 (51%)
Query: 343 VTYNCFLKVLCDNKNGDEALRLYGRMIEVGC 373
VTYN + LC +EAL L+ M E G
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGI 31
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 38.2 bits (90), Expect = 2e-04
Identities = 14/34 (41%), Positives = 18/34 (52%)
Query: 379 TYNMLISMYFELGEPDGAFETWHEMDKRGCAQDV 412
TYN LI + G + A E + EM +RG DV
Sbjct: 2 TYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 37.8 bits (89), Expect = 3e-04
Identities = 13/34 (38%), Positives = 16/34 (47%)
Query: 274 TYAIMIVALVQNDRMEECFSLLGHMINSGCLPDV 307
TY +I L + R+EE L M G PDV
Sbjct: 2 TYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 37.8 bits (89), Expect = 3e-04
Identities = 13/30 (43%), Positives = 19/30 (63%)
Query: 379 TYNMLISMYFELGEPDGAFETWHEMDKRGC 408
TYN LIS Y + G+ + A E + EM ++G
Sbjct: 2 TYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 41.8 bits (98), Expect = 0.001
Identities = 79/398 (19%), Positives = 140/398 (35%), Gaps = 78/398 (19%)
Query: 107 HQDNYAHEPLAYNLMIDILSSTK-------YKAKQFRLVCSMLDYMKRNNKVFVPVDVLL 159
+ E + I + +K Y+ KQ R S L +K K L
Sbjct: 267 EYNGLLQEAAISS-GKGIFAESKREELYTFYEEKQSRAKSSRLPNVKGLRKGVSSATNSL 325
Query: 160 MILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNIL-- 217
+ K+ + P ++ D + L Y + K K + YN L
Sbjct: 326 SLDKKNNGVKDAEL-PGQSSGQAASDVEEENSLAAYNGGV--SGKRKSPEYIDAYNRLLR 382
Query: 218 ------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKA-RMVTEAADLFEFMRTKGSTISSP 270
+ LE+M + G + Y+ CK R V EA F F + I +P
Sbjct: 383 DGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEA---FRFAKL----IRNP 435
Query: 271 TAKTY---------------AIMIVALVQNDRME-EC-------------------FSLL 295
T T+ A+ ++ LVQ ++ +C F +
Sbjct: 436 TLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVF 495
Query: 296 GHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDN 355
M+N+G +V T+ +++G AG+V +A+ M +K PD V +N + +
Sbjct: 496 HEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQS 555
Query: 356 KNGDEALRLYGRM------IEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCA 409
D A + M I+ P T L+ G+ D A E + + +
Sbjct: 556 GAVDRAFDVLAEMKAETHPID----PDHITVGALMKACANAGQVDRAKEVYQMIHEYNIK 611
Query: 410 QDVDTYCVMIDGLFDCSK---VEEACFLLEEVVNKGLK 444
+ Y + ++ CS+ + A + +++ KG+K
Sbjct: 612 GTPEVYTIAVNS---CSQKGDWDFALSIYDDMKKKGVK 646
|
Length = 1060 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 41.4 bits (97), Expect = 0.001
Identities = 34/133 (25%), Positives = 58/133 (43%), Gaps = 19/133 (14%)
Query: 176 EINALNLLLDALCKCGLVDYAETICKRV--KNKVKPNA--NTYNILGMQT-----LEEMI 226
+I A L+D K G ++ A + R+ KN + NA Y G T E MI
Sbjct: 359 DIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMI 418
Query: 227 QMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFM----RTKGSTISSPTAKTYAIMIVAL 282
G AP++ T+ + + + + ++F+ M R K P A YA MI L
Sbjct: 419 AEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIK------PRAMHYACMIELL 472
Query: 283 VQNDRMEECFSLL 295
+ ++E ++++
Sbjct: 473 GREGLLDEAYAMI 485
|
Length = 697 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 35.9 bits (84), Expect = 0.001
Identities = 16/30 (53%), Positives = 20/30 (66%)
Query: 235 FTYNTAIDTFCKARMVTEAADLFEFMRTKG 264
TYNT ID CKA V EA +LF+ M+ +G
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERG 30
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 35.9 bits (84), Expect = 0.001
Identities = 12/31 (38%), Positives = 15/31 (48%)
Query: 343 VTYNCFLKVLCDNKNGDEALRLYGRMIEVGC 373
VTYN + C +EAL L+ M E G
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 35.5 bits (83), Expect = 0.002
Identities = 14/30 (46%), Positives = 20/30 (66%)
Query: 235 FTYNTAIDTFCKARMVTEAADLFEFMRTKG 264
TYN+ I +CKA + EA +LF+ M+ KG
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKG 30
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 34.8 bits (81), Expect = 0.003
Identities = 11/33 (33%), Positives = 16/33 (48%)
Query: 377 VQTYNMLISMYFELGEPDGAFETWHEMDKRGCA 409
++TYN L+ + G+PD A EM G
Sbjct: 1 LETYNALLLALAKAGDPDLALAVLEEMKASGLK 33
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 499 | |||
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 99.93 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 99.92 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.89 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.88 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.81 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.79 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.79 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.74 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.73 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.73 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.72 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.72 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.71 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.71 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.7 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.66 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.65 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.64 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.61 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.57 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.57 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.56 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.54 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.52 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.47 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.46 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.45 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.44 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.42 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.41 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.39 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.39 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.39 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.37 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.37 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.35 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.35 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.33 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.32 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.32 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.32 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.3 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.3 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.3 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.27 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.27 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.26 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.22 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.22 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.2 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.18 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.18 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.18 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.17 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.1 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.09 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.08 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.07 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.03 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.03 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.01 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 98.95 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 98.94 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 98.94 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 98.92 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 98.92 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 98.91 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 98.91 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 98.88 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.87 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 98.86 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 98.84 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 98.8 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.79 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 98.78 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.76 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.72 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 98.69 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.67 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 98.61 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.59 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.57 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 98.56 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.54 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 98.52 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.51 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.5 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.49 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 98.49 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.46 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.43 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 98.41 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.41 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.4 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.38 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.36 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.35 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.34 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 98.32 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 98.26 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 98.25 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.22 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.22 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.21 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.21 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 98.18 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 98.17 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.16 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.15 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.14 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.11 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 98.11 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.11 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 98.09 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.09 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.09 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 98.08 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 98.07 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 98.07 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 98.06 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 98.05 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.04 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.04 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 98.03 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 98.03 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 98.02 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.01 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 98.01 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.0 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 98.0 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 97.94 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.91 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 97.91 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 97.89 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 97.89 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 97.88 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 97.86 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 97.86 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.85 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 97.85 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 97.84 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.71 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.7 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.67 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.66 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 97.64 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.62 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.59 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.56 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 97.53 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.42 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 97.41 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 97.39 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.33 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.3 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 97.26 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.23 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 97.23 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.22 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.22 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 97.21 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.2 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.19 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.16 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.12 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 97.1 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.09 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 97.07 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 96.97 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 96.96 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 96.94 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 96.94 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 96.93 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 96.9 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 96.88 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 96.88 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 96.88 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 96.88 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 96.86 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 96.85 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 96.85 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 96.82 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 96.8 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 96.7 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 96.68 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 96.68 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 96.66 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 96.62 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 96.58 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 96.58 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 96.54 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 96.52 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 96.52 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 96.43 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 96.4 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 96.31 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 96.3 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 96.28 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 96.28 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 96.23 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 96.21 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 96.19 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 96.01 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 95.95 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 95.88 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 95.83 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 95.8 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 95.67 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 95.67 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 95.64 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 95.62 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 95.58 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 95.49 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 95.36 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 95.29 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 95.28 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 95.12 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 95.1 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 94.82 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 94.79 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 94.72 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 94.69 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 94.61 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 94.51 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 94.49 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 94.45 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 94.31 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 94.3 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 94.3 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 94.21 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 93.91 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 93.8 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 93.68 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 93.56 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 93.52 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 93.5 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 93.49 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 93.44 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 93.41 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 93.3 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 93.22 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 93.13 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 93.06 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 92.88 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 92.65 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 92.63 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 92.32 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 92.32 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 92.24 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 92.05 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 91.85 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 91.84 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 91.83 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 91.67 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 91.54 | |
| COG1747 | 711 | Uncharacterized N-terminal domain of the transcrip | 91.42 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 91.3 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 91.2 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 91.17 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 90.94 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 90.61 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 90.56 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 90.32 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 90.05 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 90.02 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 89.96 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 89.96 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 89.91 | |
| PF02284 | 108 | COX5A: Cytochrome c oxidase subunit Va; InterPro: | 89.89 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 89.74 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 89.7 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 89.65 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 89.61 | |
| PF13929 | 292 | mRNA_stabil: mRNA stabilisation | 89.51 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 89.48 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 89.46 | |
| PF13762 | 145 | MNE1: Mitochondrial splicing apparatus component | 89.38 | |
| cd00923 | 103 | Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. | 89.16 | |
| cd00923 | 103 | Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. | 89.08 | |
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 88.89 | |
| PF02284 | 108 | COX5A: Cytochrome c oxidase subunit Va; InterPro: | 88.76 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 88.49 | |
| PHA02875 | 413 | ankyrin repeat protein; Provisional | 87.74 | |
| COG3947 | 361 | Response regulator containing CheY-like receiver a | 87.71 | |
| KOG2063 | 877 | consensus Vacuolar assembly/sorting proteins VPS39 | 87.21 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 86.87 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 86.41 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 86.17 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 85.1 | |
| PRK15180 | 831 | Vi polysaccharide biosynthesis protein TviD; Provi | 84.46 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 84.0 | |
| KOG2396 | 568 | consensus HAT (Half-A-TPR) repeat-containing prote | 82.88 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 82.74 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 82.57 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 82.12 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 82.0 | |
| PRK09687 | 280 | putative lyase; Provisional | 81.67 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 81.53 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 81.29 | |
| PF13929 | 292 | mRNA_stabil: mRNA stabilisation | 81.12 | |
| PF00637 | 143 | Clathrin: Region in Clathrin and VPS; InterPro: IP | 80.79 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 80.64 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 80.38 | |
| PF00637 | 143 | Clathrin: Region in Clathrin and VPS; InterPro: IP | 80.26 |
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-56 Score=463.69 Aligned_cols=454 Identities=13% Similarity=0.180 Sum_probs=366.4
Q ss_pred cchhhHHHHHHHh-ccCccchhhccCCccccccccccCCCcchHHHHHHHHHhccCCCchHHHHHhhCCC--CCCHHHHH
Q 036198 9 PTEAQYAVLVRVI-RTKSLQSYIGKVPSLVCKVFDESSDSVSDVAKLYEAIIDNSNAYDNMEKALDSLGV--PLTTDSVV 85 (499)
Q Consensus 9 p~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~al~~~~~--~~~~~~~~ 85 (499)
+|...|..++..+ +.+.+..+......+... ...+++..++..++..+.+.+.+.+|++.+.. .++...+.
T Consensus 368 ~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~------gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~pd~~Tyn 441 (1060)
T PLN03218 368 RKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKR------GLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRNPTLSTFN 441 (1060)
T ss_pred CCchHHHHHHHHHHHCcCHHHHHHHHHHHHhC------CCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCCCCHHHHH
Confidence 4455566666666 666666665433332211 12345566677778888888888877765532 25555666
Q ss_pred HHHHccC--CChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHHHcCCCcccHHHHHHHHH
Q 036198 86 GVLQRFQ--FEEKIAFRFFMWAGHQDNYAHEPLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLMILK 163 (499)
Q Consensus 86 ~~l~~~~--~~~~~a~~~f~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~l~ 163 (499)
.++..+. ...+.|.++|+.| .+.|+.||..+|+.+|.+|+ +.|+++.|.++|++|.+.|. .++..+++.++.
T Consensus 442 ~LL~a~~k~g~~e~A~~lf~~M-~~~Gl~pD~~tynsLI~~y~----k~G~vd~A~~vf~eM~~~Gv-~PdvvTynaLI~ 515 (1060)
T PLN03218 442 MLMSVCASSQDIDGALRVLRLV-QEAGLKADCKLYTTLISTCA----KSGKVDAMFEVFHEMVNAGV-EANVHTFGALID 515 (1060)
T ss_pred HHHHHHHhCcCHHHHHHHHHHH-HHcCCCCCHHHHHHHHHHHH----hCcCHHHHHHHHHHHHHcCC-CCCHHHHHHHHH
Confidence 6665543 3346788888876 45678888888888888888 88888888888888888775 456666666666
Q ss_pred HHHHh-------------hhcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHhhc---CCCCChhhHHHH----------
Q 036198 164 QYTEK-------------IKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKN---KVKPNANTYNIL---------- 217 (499)
Q Consensus 164 ~~~~~-------------~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~p~~~~~~~l---------- 217 (499)
.|++. ...++.||..+|+.+|.+|++.|++++|.++|++|.. ++.||..+|+++
T Consensus 516 gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~l 595 (1060)
T PLN03218 516 GCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQV 595 (1060)
T ss_pred HHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCH
Confidence 55443 5567889999999999999999999999999999864 478999999888
Q ss_pred --HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 036198 218 --GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLL 295 (499)
Q Consensus 218 --a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 295 (499)
|.++|+.|.+.|+.|+..+|+.+|.+|++.|++++|.++|++|.+.| +.||..+|+.+|.+|++.|++++|.++|
T Consensus 596 deA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~G---v~PD~~TynsLI~a~~k~G~~eeA~~l~ 672 (1060)
T PLN03218 596 DRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKG---VKPDEVFFSALVDVAGHAGDLDKAFEIL 672 (1060)
T ss_pred HHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC---CCCCHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 88899999999999999999999999999999999999999999988 7899999999999999999999999999
Q ss_pred HHHHHcCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCc
Q 036198 296 GHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWP 375 (499)
Q Consensus 296 ~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~ 375 (499)
++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|++||.+|++.|++++|.++|++|.+.|+.|
T Consensus 673 ~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~P 752 (1060)
T PLN03218 673 QDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCP 752 (1060)
T ss_pred HHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCC
Confidence 99999999999999999999999999999999999999988899999999999999999999999999999999889999
Q ss_pred ChhhHHHHHHHHHhcCCchHHHHHHHHHhHCCCCCCHHHHHHHHHHHHh----C-------------------CCHHHHH
Q 036198 376 SVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFD----C-------------------SKVEEAC 432 (499)
Q Consensus 376 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~----~-------------------g~~~~a~ 432 (499)
|..||+.++.+|++.|++++|.+++.+|.+.|+.||..+|+.++..|.+ + +..++|.
T Consensus 753 d~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al 832 (1060)
T PLN03218 753 NTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWAL 832 (1060)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHH
Confidence 9999999999999999999999999999999999999999998865432 1 1246788
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhc
Q 036198 433 FLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHMRKFY 477 (499)
Q Consensus 433 ~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~ 477 (499)
.+|++|.+.|+.||..||+.++.++++.+..+.+..+++.|....
T Consensus 833 ~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~ 877 (1060)
T PLN03218 833 MVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISA 877 (1060)
T ss_pred HHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCC
Confidence 899999999999999999999988888888888888888776543
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-56 Score=462.92 Aligned_cols=394 Identities=18% Similarity=0.266 Sum_probs=269.3
Q ss_pred HHHHHHHHHhccCCCchHHHHHhhCC------CC-CCHHHHHHHHHcc--CCChHHHHHHHHHhhcCCCCCCCHHHHHHH
Q 036198 51 VAKLYEAIIDNSNAYDNMEKALDSLG------VP-LTTDSVVGVLQRF--QFEEKIAFRFFMWAGHQDNYAHEPLAYNLM 121 (499)
Q Consensus 51 ~~~~~~~l~~~~~~~~~~~~al~~~~------~~-~~~~~~~~~l~~~--~~~~~~a~~~f~~~~~~~~~~~~~~~~~~l 121 (499)
+...|..++..+++.|++.+|++.+. .. ++.-....++..+ ......|+.+|+.+.. ||..+|+.+
T Consensus 369 ~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~-----pd~~Tyn~L 443 (1060)
T PLN03218 369 KSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN-----PTLSTFNML 443 (1060)
T ss_pred CchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC-----CCHHHHHHH
Confidence 34557777777778999999977653 21 2222222233222 2345678999988742 899999999
Q ss_pred HHHHhcchhhhhhHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHH-------------hhhcCCCCCHHHHHHHHHHHH
Q 036198 122 IDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLMILKQYTE-------------KIKVKTQPEINALNLLLDALC 188 (499)
Q Consensus 122 i~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~l~~~~~-------------~~~~~~~~~~~~~~~li~~~~ 188 (499)
|.+|+ +.|+++.|.++|++|.+.|. .++..+++.++..|++ |...|+.||..+|+++|.+|+
T Consensus 444 L~a~~----k~g~~e~A~~lf~~M~~~Gl-~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~ 518 (1060)
T PLN03218 444 MSVCA----SSQDIDGALRVLRLVQEAGL-KADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCA 518 (1060)
T ss_pred HHHHH----hCcCHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 99999 99999999999999999985 3455555555544433 255566666666666666666
Q ss_pred hCCChHHHHHHHHHhhc-CCCCChhhHHHH------------HHHHHHHHHH--cCCCCCHHHHHHHHHHHHhcCCHhHH
Q 036198 189 KCGLVDYAETICKRVKN-KVKPNANTYNIL------------GMQTLEEMIQ--MGHAPDNFTYNTAIDTFCKARMVTEA 253 (499)
Q Consensus 189 ~~g~~~~A~~~~~~m~~-~~~p~~~~~~~l------------a~~~~~~m~~--~g~~p~~~~~~~li~~~~~~g~~~~a 253 (499)
+.|++++|.++|++|.+ ++.||..+|+.+ |.++|++|.. .|+.||..+|+++|.+|++.|++++|
T Consensus 519 k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA 598 (1060)
T PLN03218 519 RAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRA 598 (1060)
T ss_pred HCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHH
Confidence 66666666666666654 466666666666 6666666654 45666666666666666666666666
Q ss_pred HHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHH
Q 036198 254 ADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEM 333 (499)
Q Consensus 254 ~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m 333 (499)
.++|+.|.+.| +.|+..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++|++|
T Consensus 599 ~elf~~M~e~g---i~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM 675 (1060)
T PLN03218 599 KEVYQMIHEYN---IKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDA 675 (1060)
T ss_pred HHHHHHHHHcC---CCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 66666666666 566666666666666666666666666666666666666666666666666666666666666666
Q ss_pred HhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcChhhHHHHHHHHHhcCCchHHHHHHHHHhHCCCCCCHH
Q 036198 334 GNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVD 413 (499)
Q Consensus 334 ~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~ 413 (499)
.+.|+.||..+|+++|.+|++.|++++|.++|++|.+.|+.||..+|+.||.+|++.|++++|.++|++|.+.|+.||..
T Consensus 676 ~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~ 755 (1060)
T PLN03218 676 RKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTI 755 (1060)
T ss_pred HHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHH
Confidence 66666666666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 036198 414 TYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQL 457 (499)
Q Consensus 414 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~ 457 (499)
+|+.++.+|++.|++++|.+++.+|.+.|+.||..+|+.++..|
T Consensus 756 Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc 799 (1060)
T PLN03218 756 TYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLC 799 (1060)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 66666666666666666666666666666666666666666543
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-54 Score=456.38 Aligned_cols=442 Identities=13% Similarity=0.146 Sum_probs=299.6
Q ss_pred cccCcchhhHHHHHHHh-ccCccchhhccCCccccccccccCCCcchHHHHHHHHHhccCCCchHHHHHh------hCCC
Q 036198 5 HLVSPTEAQYAVLVRVI-RTKSLQSYIGKVPSLVCKVFDESSDSVSDVAKLYEAIIDNSNAYDNMEKALD------SLGV 77 (499)
Q Consensus 5 ~~~~p~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~al~------~~~~ 77 (499)
+.-.||+++||.+|+++ +.+..+.++.....+.. .+..|+..+|+.+++++++.+++..+.+ ..+.
T Consensus 146 ~m~~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~-------~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~ 218 (857)
T PLN03077 146 KMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLW-------AGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGF 218 (857)
T ss_pred cCCCCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHH-------cCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCC
Confidence 44467888888888887 65555555543332211 1445666777777777777666554433 2355
Q ss_pred CCCHHHHHHHHHccC--CChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHHHcCCCcccH
Q 036198 78 PLTTDSVVGVLQRFQ--FEEKIAFRFFMWAGHQDNYAHEPLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPV 155 (499)
Q Consensus 78 ~~~~~~~~~~l~~~~--~~~~~a~~~f~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~ 155 (499)
.++...++.++..+. ...+.|.++|+.+. .||..+||.+|.+|+ +.|++++|.++|++|.+.|. .++.
T Consensus 219 ~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~-----~~d~~s~n~li~~~~----~~g~~~eAl~lf~~M~~~g~-~Pd~ 288 (857)
T PLN03077 219 ELDVDVVNALITMYVKCGDVVSARLVFDRMP-----RRDCISWNAMISGYF----ENGECLEGLELFFTMRELSV-DPDL 288 (857)
T ss_pred CcccchHhHHHHHHhcCCCHHHHHHHHhcCC-----CCCcchhHHHHHHHH----hCCCHHHHHHHHHHHHHcCC-CCCh
Confidence 555555555554442 23456777777663 357777788887777 77777778888887777765 5566
Q ss_pred HHHHHHHHHHHHh-------------hhcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHhhcCCCCChhhHHHH-----
Q 036198 156 DVLLMILKQYTEK-------------IKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNIL----- 217 (499)
Q Consensus 156 ~~~~~~l~~~~~~-------------~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~~~~~l----- 217 (499)
.++..++.++... .+.|+.||..+||++|.+|++.|++++|.++|++|.. ||..+|+.+
T Consensus 289 ~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~---~d~~s~n~li~~~~ 365 (857)
T PLN03077 289 MTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMET---KDAVSWTAMISGYE 365 (857)
T ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCC---CCeeeHHHHHHHHH
Confidence 6777777665433 5567777777777777777777777777777777753 577777777
Q ss_pred -------HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHH
Q 036198 218 -------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEE 290 (499)
Q Consensus 218 -------a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~ 290 (499)
|.++|++|.+.|+.||..||+.++.+|++.|++++|.++++.|.+.| ..|+..+|+++|.+|++.|++++
T Consensus 366 ~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g---~~~~~~~~n~Li~~y~k~g~~~~ 442 (857)
T PLN03077 366 KNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKG---LISYVVVANALIEMYSKCKCIDK 442 (857)
T ss_pred hCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhC---CCcchHHHHHHHHHHHHcCCHHH
Confidence 67777777777777777777777777777777777777777777666 55666666666666666666666
Q ss_pred HHHHHHHHHHc------------------------------CCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 036198 291 CFSLLGHMINS------------------------------GCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPP 340 (499)
Q Consensus 291 a~~~~~~m~~~------------------------------~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p 340 (499)
|.++|++|.+. ++.||..||+.++.+|++.|+.+.+.+++..+.+.|+.+
T Consensus 443 A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~ 522 (857)
T PLN03077 443 ALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGF 522 (857)
T ss_pred HHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCc
Confidence 66666655421 244555555555555544444444444444444555555
Q ss_pred CHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcChhhHHHHHHHHHhcCCchHHHHHHHHHhHCCCCCCHHHHHHHHH
Q 036198 341 DIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMID 420 (499)
Q Consensus 341 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~ 420 (499)
|..++++||.+|++.|++++|.++|+.+ .||..+||++|.+|++.|+.++|.++|++|.+.|+.||..||+.++.
T Consensus 523 ~~~~~naLi~~y~k~G~~~~A~~~f~~~-----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~ 597 (857)
T PLN03077 523 DGFLPNALLDLYVRCGRMNYAWNQFNSH-----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLC 597 (857)
T ss_pred cceechHHHHHHHHcCCHHHHHHHHHhc-----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHH
Confidence 5555555555556666666666666554 46777888888888888888888888888888888888888888888
Q ss_pred HHHhCCCHHHHHHHHHHHH-HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 036198 421 GLFDCSKVEEACFLLEEVV-NKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHMR 474 (499)
Q Consensus 421 ~~~~~g~~~~a~~~~~~m~-~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~ 474 (499)
+|++.|++++|.++|++|. +.|+.|+..+|+.++.+|++.|++++|.+++++|.
T Consensus 598 a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~ 652 (857)
T PLN03077 598 ACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMP 652 (857)
T ss_pred HHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCC
Confidence 8888888888888888887 56888888888888888888888888888888874
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-53 Score=438.72 Aligned_cols=441 Identities=15% Similarity=0.172 Sum_probs=391.0
Q ss_pred CcchhhHHHHHHHh-ccCccchhhccCCccccccccccCCCcchHHHHHHHHHhccCCCchHHHHHh------hCCCCCC
Q 036198 8 SPTEAQYAVLVRVI-RTKSLQSYIGKVPSLVCKVFDESSDSVSDVAKLYEAIIDNSNAYDNMEKALD------SLGVPLT 80 (499)
Q Consensus 8 ~p~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~al~------~~~~~~~ 80 (499)
.++.++|+.+|.++ +.+....++.....+.. ..+..++..+|+.++.++++.+++..+.+ ..+..++
T Consensus 84 ~~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~------~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~ 157 (697)
T PLN03081 84 RKSGVSLCSQIEKLVACGRHREALELFEILEA------GCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPD 157 (697)
T ss_pred CCCceeHHHHHHHHHcCCCHHHHHHHHHHHHh------cCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcc
Confidence 34566899999998 65665566544433221 11234677899999999999998876543 4477788
Q ss_pred HHHHHHHHHccC--CChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHHHcCCCcccHHHH
Q 036198 81 TDSVVGVLQRFQ--FEEKIAFRFFMWAGHQDNYAHEPLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVL 158 (499)
Q Consensus 81 ~~~~~~~l~~~~--~~~~~a~~~f~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~ 158 (499)
...+..++.... ...+.|.++|+.+. .||..+||.+|.+|+ +.|++++|.++|++|.+.|. .++..++
T Consensus 158 ~~~~n~Li~~y~k~g~~~~A~~lf~~m~-----~~~~~t~n~li~~~~----~~g~~~~A~~lf~~M~~~g~-~p~~~t~ 227 (697)
T PLN03081 158 QYMMNRVLLMHVKCGMLIDARRLFDEMP-----ERNLASWGTIIGGLV----DAGNYREAFALFREMWEDGS-DAEPRTF 227 (697)
T ss_pred hHHHHHHHHHHhcCCCHHHHHHHHhcCC-----CCCeeeHHHHHHHHH----HCcCHHHHHHHHHHHHHhCC-CCChhhH
Confidence 888888876653 34578999999874 379999999999999 99999999999999999886 5677888
Q ss_pred HHHHHHHHHh-------------hhcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHhhcCCCCChhhHHHH--------
Q 036198 159 LMILKQYTEK-------------IKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNIL-------- 217 (499)
Q Consensus 159 ~~~l~~~~~~-------------~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~~~~~l-------- 217 (499)
..+++++... .+.|+.||..+||+||++|+++|++++|.++|++|.. +|..+||.+
T Consensus 228 ~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~---~~~vt~n~li~~y~~~g 304 (697)
T PLN03081 228 VVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE---KTTVAWNSMLAGYALHG 304 (697)
T ss_pred HHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCC---CChhHHHHHHHHHHhCC
Confidence 8888877653 6778999999999999999999999999999999975 699999999
Q ss_pred ----HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 036198 218 ----GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFS 293 (499)
Q Consensus 218 ----a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~ 293 (499)
|.++|++|.+.|+.||..||+.++.+|++.|++++|.+++..|.+.| ..||..+|++++.+|++.|++++|.+
T Consensus 305 ~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g---~~~d~~~~~~Li~~y~k~G~~~~A~~ 381 (697)
T PLN03081 305 YSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTG---FPLDIVANTALVDLYSKWGRMEDARN 381 (697)
T ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhC---CCCCeeehHHHHHHHHHCCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999 78999999999999999999999999
Q ss_pred HHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHH-CC
Q 036198 294 LLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIE-VG 372 (499)
Q Consensus 294 ~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-~~ 372 (499)
+|++|.+ ||..+|+.||.+|++.|+.++|.++|++|.+.|+.||..||+++|.+|++.|..++|.++|+.|.+ .|
T Consensus 382 vf~~m~~----~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g 457 (697)
T PLN03081 382 VFDRMPR----KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHR 457 (697)
T ss_pred HHHhCCC----CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcC
Confidence 9999963 789999999999999999999999999999999999999999999999999999999999999986 59
Q ss_pred CCcChhhHHHHHHHHHhcCCchHHHHHHHHHhHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 036198 373 CWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDS 452 (499)
Q Consensus 373 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ 452 (499)
+.|+..+|+.++.+|++.|++++|.+++++| ++.|+..+|+.++.+|...|+++.|..+++++.+.+. .+..+|..
T Consensus 458 ~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~---~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p-~~~~~y~~ 533 (697)
T PLN03081 458 IKPRAMHYACMIELLGREGLLDEAYAMIRRA---PFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGP-EKLNNYVV 533 (697)
T ss_pred CCCCccchHhHHHHHHhcCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCC-CCCcchHH
Confidence 9999999999999999999999999998876 5689999999999999999999999999999975542 24779999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhhcC
Q 036198 453 YLMQLSVIGDLGAIHKLSDHMRKFYN 478 (499)
Q Consensus 453 ll~~~~~~g~~~~a~~~~~~m~~~~~ 478 (499)
+++.|++.|++++|.++++.|++.+-
T Consensus 534 L~~~y~~~G~~~~A~~v~~~m~~~g~ 559 (697)
T PLN03081 534 LLNLYNSSGRQAEAAKVVETLKRKGL 559 (697)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHcCC
Confidence 99999999999999999999998764
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-52 Score=443.18 Aligned_cols=460 Identities=16% Similarity=0.164 Sum_probs=391.6
Q ss_pred cccCcchhhHHHHHHHh-ccCccchhhccCCccccccccccC-CCcchHHHHHHHHHhccCCCchHHHHHhhCCCCC--C
Q 036198 5 HLVSPTEAQYAVLVRVI-RTKSLQSYIGKVPSLVCKVFDESS-DSVSDVAKLYEAIIDNSNAYDNMEKALDSLGVPL--T 80 (499)
Q Consensus 5 ~~~~p~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~al~~~~~~~--~ 80 (499)
..+.||.+||+++++++ ..+++....+ .+.... .+..++..+|+.++..|++.|+++.|.+.+.... +
T Consensus 181 ~g~~Pd~~t~~~ll~~~~~~~~~~~~~~--------~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~d 252 (857)
T PLN03077 181 AGVRPDVYTFPCVLRTCGGIPDLARGRE--------VHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRD 252 (857)
T ss_pred cCCCCChhHHHHHHHHhCCccchhhHHH--------HHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCCCC
Confidence 46899999999999998 4444333221 111111 1345667889999999999999999988776543 3
Q ss_pred HHHHHHHHHccC--CChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHHHcCCCcccHHHH
Q 036198 81 TDSVVGVLQRFQ--FEEKIAFRFFMWAGHQDNYAHEPLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVL 158 (499)
Q Consensus 81 ~~~~~~~l~~~~--~~~~~a~~~f~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~ 158 (499)
...++.++..+. ...+.|+++|+.|. ..|+.||..||+.+|.+|+ +.|+++.|.+++..|.+.|. .++..++
T Consensus 253 ~~s~n~li~~~~~~g~~~eAl~lf~~M~-~~g~~Pd~~ty~~ll~a~~----~~g~~~~a~~l~~~~~~~g~-~~d~~~~ 326 (857)
T PLN03077 253 CISWNAMISGYFENGECLEGLELFFTMR-ELSVDPDLMTITSVISACE----LLGDERLGREMHGYVVKTGF-AVDVSVC 326 (857)
T ss_pred cchhHHHHHHHHhCCCHHHHHHHHHHHH-HcCCCCChhHHHHHHHHHH----hcCChHHHHHHHHHHHHhCC-ccchHHH
Confidence 345666666553 34578999999874 5689999999999999999 89999999999999999886 5677888
Q ss_pred HHHHHHHHHh---------hhcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHhhc-CCCCChhhHHHH-----------
Q 036198 159 LMILKQYTEK---------IKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKN-KVKPNANTYNIL----------- 217 (499)
Q Consensus 159 ~~~l~~~~~~---------~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~~~p~~~~~~~l----------- 217 (499)
+.++..|.+. ...=..||..+||++|.+|++.|++++|.++|++|.+ ++.||..||+.+
T Consensus 327 n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~ 406 (857)
T PLN03077 327 NSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLD 406 (857)
T ss_pred HHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHH
Confidence 8888887765 2222368899999999999999999999999999975 689999999988
Q ss_pred -HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCC---------------------------CCC
Q 036198 218 -GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGST---------------------------ISS 269 (499)
Q Consensus 218 -a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~---------------------------~~~ 269 (499)
+.++++.|.+.|+.|+..+|+.++.+|++.|++++|.++|++|.+.+.. ..+
T Consensus 407 ~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~~~ 486 (857)
T PLN03077 407 VGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLLTLK 486 (857)
T ss_pred HHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHhCCC
Confidence 8889999999999999888888888888888888888887776543210 157
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHH
Q 036198 270 PTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFL 349 (499)
Q Consensus 270 p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li 349 (499)
||..||+.+|.+|++.|+++.+.+++..+.+.|+.++..+++.|+++|++.|++++|.++|+.+ .||..+||++|
T Consensus 487 pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-----~~d~~s~n~lI 561 (857)
T PLN03077 487 PNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-----EKDVVSWNILL 561 (857)
T ss_pred CCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-----CCChhhHHHHH
Confidence 8889999999999999999999999999999999999999999999999999999999999987 47999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCcChhhHHHHHHHHHhcCCchHHHHHHHHHh-HCCCCCCHHHHHHHHHHHHhCCCH
Q 036198 350 KVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMD-KRGCAQDVDTYCVMIDGLFDCSKV 428 (499)
Q Consensus 350 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~-~~~~~p~~~~~~~li~~~~~~g~~ 428 (499)
.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|++.|++++|.++|+.|. +.|+.|+..+|+.++.+|++.|++
T Consensus 562 ~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~ 641 (857)
T PLN03077 562 TGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKL 641 (857)
T ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCH
Confidence 9999999999999999999999999999999999999999999999999999998 679999999999999999999999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcChhHHHHHH
Q 036198 429 EEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHMRKFYNPVIARRLA 486 (499)
Q Consensus 429 ~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~ 486 (499)
++|.+++++| .++||..+|++|+.+|...|+.+.++...+++.+..+.....+..
T Consensus 642 ~eA~~~~~~m---~~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~l 696 (857)
T PLN03077 642 TEAYNFINKM---PITPDPAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYIL 696 (857)
T ss_pred HHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHH
Confidence 9999999998 378999999999999999999999999999998886665444333
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-51 Score=421.34 Aligned_cols=363 Identities=16% Similarity=0.197 Sum_probs=239.5
Q ss_pred HHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHHh-------
Q 036198 96 KIAFRFFMWAGHQDNYAHEPLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLMILKQYTEK------- 168 (499)
Q Consensus 96 ~~a~~~f~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~l~~~~~~------- 168 (499)
+.|+++|+|+....++.||..+|+.++.+|+ +.++++.+.+++..|.+.|.. ++..+++.++..|.+.
T Consensus 104 ~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~----~~~~~~~a~~l~~~m~~~g~~-~~~~~~n~Li~~y~k~g~~~~A~ 178 (697)
T PLN03081 104 REALELFEILEAGCPFTLPASTYDALVEACI----ALKSIRCVKAVYWHVESSGFE-PDQYMMNRVLLMHVKCGMLIDAR 178 (697)
T ss_pred HHHHHHHHHHHhcCCCCCCHHHHHHHHHHHH----hCCCHHHHHHHHHHHHHhCCC-cchHHHHHHHHHHhcCCCHHHHH
Confidence 3444444444333334444444444444444 444444444444444444432 2333444444443322
Q ss_pred --hhcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHhhc-CCCCChhhHHHH------------HHHHHHHHHHcCCCCC
Q 036198 169 --IKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKN-KVKPNANTYNIL------------GMQTLEEMIQMGHAPD 233 (499)
Q Consensus 169 --~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~~~p~~~~~~~l------------a~~~~~~m~~~g~~p~ 233 (499)
...-..||..+||++|.+|++.|++++|.++|++|.+ +..||..||+.+ +.+++..+.+.|+.||
T Consensus 179 ~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d 258 (697)
T PLN03081 179 RLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGD 258 (697)
T ss_pred HHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCcc
Confidence 1111236777777777777777777777777777764 577777777666 5666677777777777
Q ss_pred HHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHhHHHH
Q 036198 234 NFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEV 313 (499)
Q Consensus 234 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l 313 (499)
..+|+.++.+|++.|++++|.++|++|. .+|..+||++|.+|++.|++++|.++|++|.+.|+.||..||+.+
T Consensus 259 ~~~~n~Li~~y~k~g~~~~A~~vf~~m~-------~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~l 331 (697)
T PLN03081 259 TFVSCALIDMYSKCGDIEDARCVFDGMP-------EKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIM 331 (697)
T ss_pred ceeHHHHHHHHHHCCCHHHHHHHHHhCC-------CCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 7777777777777777777777777663 346677777777777777777777777777777777777777777
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcChhhHHHHHHHHHhcCCc
Q 036198 314 LEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEP 393 (499)
Q Consensus 314 l~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~ 393 (499)
+.+|++.|++++|.+++..|.+.|+.||..+|++||.+|++.|++++|.++|++|.+ ||..+||+||.+|++.|+.
T Consensus 332 l~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~----~d~~t~n~lI~~y~~~G~~ 407 (697)
T PLN03081 332 IRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR----KNLISWNALIAGYGNHGRG 407 (697)
T ss_pred HHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC----CCeeeHHHHHHHHHHcCCH
Confidence 777777777777777777777777777777777777777777777777777777643 5667777777777777777
Q ss_pred hHHHHHHHHHhHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 036198 394 DGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVN-KGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDH 472 (499)
Q Consensus 394 ~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~ 472 (499)
++|.++|++|.+.|+.||..||+.++.+|++.|.+++|.++|+.|.+ .|+.|+..+|+.++++|++.|++++|.+++++
T Consensus 408 ~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~ 487 (697)
T PLN03081 408 TKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRR 487 (697)
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHH
Confidence 77777777777777777777777777777777777777777777764 46777777777777777777777777777666
Q ss_pred HH
Q 036198 473 MR 474 (499)
Q Consensus 473 m~ 474 (499)
|.
T Consensus 488 ~~ 489 (697)
T PLN03081 488 AP 489 (697)
T ss_pred CC
Confidence 53
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.1e-21 Score=207.95 Aligned_cols=432 Identities=14% Similarity=0.104 Sum_probs=320.6
Q ss_pred HHHHHHh-ccCccchhhccCCccccccccccCCCcchHHHHHHHHHhccCCCchHHHHHhhCC----C-CCCHHHHHHH-
Q 036198 15 AVLVRVI-RTKSLQSYIGKVPSLVCKVFDESSDSVSDVAKLYEAIIDNSNAYDNMEKALDSLG----V-PLTTDSVVGV- 87 (499)
Q Consensus 15 ~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~al~~~~----~-~~~~~~~~~~- 87 (499)
..++..+ ..++.+.+......+. ...|++...+..+...+...++.++|.+.+. . +-+...+..+
T Consensus 435 ~~l~~~~~~~~~~~~A~~~~~~~~--------~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la 506 (899)
T TIGR02917 435 LLLILSYLRSGQFDKALAAAKKLE--------KKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLA 506 (899)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHH--------HhCCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHH
Confidence 3344444 6666666655444322 2233445678888888888899888876552 1 1222222211
Q ss_pred -HHccCCChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHH
Q 036198 88 -LQRFQFEEKIAFRFFMWAGHQDNYAHEPLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLMILKQYT 166 (499)
Q Consensus 88 -l~~~~~~~~~a~~~f~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~l~~~~ 166 (499)
+..-....+.|.+.|+.+.... +.+..++..+...+. +.|++++|..+++++...+ +.+...+..+...+.
T Consensus 507 ~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~----~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~ 578 (899)
T TIGR02917 507 RIDIQEGNPDDAIQRFEKVLTID--PKNLRAILALAGLYL----RTGNEEEAVAWLEKAAELN--PQEIEPALALAQYYL 578 (899)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC--cCcHHHHHHHHHHHH----HcCCHHHHHHHHHHHHHhC--ccchhHHHHHHHHHH
Confidence 1222455677888888765432 246778888888888 8899999999999987766 333333333333332
Q ss_pred Hh------------hhcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHhhcCCCCChhhHHHH------------HHHHH
Q 036198 167 EK------------IKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNIL------------GMQTL 222 (499)
Q Consensus 167 ~~------------~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~~~~~l------------a~~~~ 222 (499)
.. .....+.+...|..+...+...|++++|.+.|+++.+..+.+...+..+ |...+
T Consensus 579 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 658 (899)
T TIGR02917 579 GKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSL 658 (899)
T ss_pred HCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHH
Confidence 22 1123455678899999999999999999999998876555555555555 77778
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 036198 223 EEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSG 302 (499)
Q Consensus 223 ~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~ 302 (499)
+.+.+.. +.+..++..+...+...|++++|.++++.+.+.. +.+...+..+...+...|++++|.+.|..+.+.+
T Consensus 659 ~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~----~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~ 733 (899)
T TIGR02917 659 KRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH----PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRA 733 (899)
T ss_pred HHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC----cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC
Confidence 7777653 2367788888999999999999999999988875 4567788888888999999999999999988764
Q ss_pred CCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcChhhHHH
Q 036198 303 CLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNM 382 (499)
Q Consensus 303 ~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ 382 (499)
|+..++..+..++.+.|++++|.+.++.+.+.. +.+...+..+...|...|++++|...|+++.+.. +.+..+++.
T Consensus 734 --~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~ 809 (899)
T TIGR02917 734 --PSSQNAIKLHRALLASGNTAEAVKTLEAWLKTH-PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKA-PDNAVVLNN 809 (899)
T ss_pred --CCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC-CCCHHHHHH
Confidence 555777778888999999999999999888764 3477888888888999999999999999988765 356778888
Q ss_pred HHHHHHhcCCchHHHHHHHHHhHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 036198 383 LISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGD 462 (499)
Q Consensus 383 li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~ 462 (499)
+...+...|+ .+|..+++++.+.. +-+...+..+...+...|++++|.++++++.+.+.. +..++..+..++.+.|+
T Consensus 810 l~~~~~~~~~-~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~g~ 886 (899)
T TIGR02917 810 LAWLYLELKD-PRALEYAEKALKLA-PNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPE-AAAIRYHLALALLATGR 886 (899)
T ss_pred HHHHHHhcCc-HHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-ChHHHHHHHHHHHHcCC
Confidence 8899999998 88999999887753 235556777888888999999999999999988754 88888899999999999
Q ss_pred HHHHHHHHHHHH
Q 036198 463 LGAIHKLSDHMR 474 (499)
Q Consensus 463 ~~~a~~~~~~m~ 474 (499)
.++|.+++++|.
T Consensus 887 ~~~A~~~~~~~~ 898 (899)
T TIGR02917 887 KAEARKELDKLL 898 (899)
T ss_pred HHHHHHHHHHHh
Confidence 999999998885
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=99.92 E-value=9.3e-21 Score=204.26 Aligned_cols=363 Identities=11% Similarity=0.033 Sum_probs=202.3
Q ss_pred HHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHHHcCCCcccHHHHHHHHHHH----------
Q 036198 96 KIAFRFFMWAGHQDNYAHEPLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLMILKQY---------- 165 (499)
Q Consensus 96 ~~a~~~f~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~l~~~---------- 165 (499)
+.|..+++.+... .+++..+|..+...+. ..|++++|.+.|+++.+.. +.....+..+...+
T Consensus 448 ~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~----~~~~~~~A~~~~~~a~~~~--~~~~~~~~~la~~~~~~g~~~~A~ 519 (899)
T TIGR02917 448 DKALAAAKKLEKK--QPDNASLHNLLGAIYL----GKGDLAKAREAFEKALSIE--PDFFPAAANLARIDIQEGNPDDAI 519 (899)
T ss_pred HHHHHHHHHHHHh--CCCCcHHHHHHHHHHH----hCCCHHHHHHHHHHHHhhC--CCcHHHHHHHHHHHHHCCCHHHHH
Confidence 3445555443321 2234556666666666 6666666666666665544 22222222211111
Q ss_pred ---HHhhhcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHhhcCCCCChhhHHHH------------HHHHHHHHHHcCC
Q 036198 166 ---TEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNIL------------GMQTLEEMIQMGH 230 (499)
Q Consensus 166 ---~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~~~~~l------------a~~~~~~m~~~g~ 230 (499)
.+... ..+.+..++..+...+.+.|+.++|...|+++....+.+...+..+ |..+++.+.+..
T Consensus 520 ~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~- 597 (899)
T TIGR02917 520 QRFEKVLT-IDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAA- 597 (899)
T ss_pred HHHHHHHH-hCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-
Confidence 11111 1223455566666666666666666666666554433343333333 555555555432
Q ss_pred CCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHhH
Q 036198 231 APDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTY 310 (499)
Q Consensus 231 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~ 310 (499)
+.+...|..+..++.+.|++++|...|+.+.+.. +.+...+..+..++...|++++|...|+++.+.. +.+..++
T Consensus 598 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~ 672 (899)
T TIGR02917 598 PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ----PDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQ 672 (899)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHH
Confidence 2355566666666666666666666666665543 2344555666666666666666666666665542 3345556
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcChhhHHHHHHHHHhc
Q 036198 311 KEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFEL 390 (499)
Q Consensus 311 ~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 390 (499)
..+...+...|++++|.++++.+.+.+ +.+...+..+...+.+.|++++|.+.|+.+.+.+ |+..++..+..++.+.
T Consensus 673 ~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~ 749 (899)
T TIGR02917 673 IGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRA--PSSQNAIKLHRALLAS 749 (899)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHC
Confidence 666666666666666666666665553 2345555566666666666666666666666543 3445555566666666
Q ss_pred CCchHHHHHHHHHhHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 036198 391 GEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLS 470 (499)
Q Consensus 391 ~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~ 470 (499)
|++++|.+.++.+.+.. +.+...+..+...|...|++++|...|+++.+.. +.+...+..+...+...|+ .+|.+++
T Consensus 750 g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~-~~A~~~~ 826 (899)
T TIGR02917 750 GNTAEAVKTLEAWLKTH-PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKA-PDNAVVLNNLAWLYLELKD-PRALEYA 826 (899)
T ss_pred CCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCc-HHHHHHH
Confidence 66666666666665542 2345556666666666666666666666666554 2355566666666666666 5566666
Q ss_pred HHHHhhcCh
Q 036198 471 DHMRKFYNP 479 (499)
Q Consensus 471 ~~m~~~~~~ 479 (499)
+++.+..+.
T Consensus 827 ~~~~~~~~~ 835 (899)
T TIGR02917 827 EKALKLAPN 835 (899)
T ss_pred HHHHhhCCC
Confidence 666655443
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.7e-19 Score=173.53 Aligned_cols=295 Identities=14% Similarity=0.091 Sum_probs=241.2
Q ss_pred hhhhHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHhhcCCCCC
Q 036198 131 KAKQFRLVCSMLDYMKRNNKVFVPVDVLLMILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPN 210 (499)
Q Consensus 131 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~ 210 (499)
..|++++|...|+++.+.+ +.+..++..+...+...|++++|..+++.+... |+
T Consensus 47 ~~~~~~~A~~~~~~al~~~------------------------p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~--~~ 100 (389)
T PRK11788 47 LNEQPDKAIDLFIEMLKVD------------------------PETVELHLALGNLFRRRGEVDRAIRIHQNLLSR--PD 100 (389)
T ss_pred hcCChHHHHHHHHHHHhcC------------------------cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcC--CC
Confidence 6789999999999999876 235668899999999999999999999887652 10
Q ss_pred hhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHH
Q 036198 211 ANTYNILGMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEE 290 (499)
Q Consensus 211 ~~~~~~la~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~ 290 (499)
.. .......+..+...|.+.|++++|..+|+++.+.. +++..++..++..+.+.|++++
T Consensus 101 ~~-----------------~~~~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~----~~~~~~~~~la~~~~~~g~~~~ 159 (389)
T PRK11788 101 LT-----------------REQRLLALQELGQDYLKAGLLDRAEELFLQLVDEG----DFAEGALQQLLEIYQQEKDWQK 159 (389)
T ss_pred CC-----------------HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCC----cchHHHHHHHHHHHHHhchHHH
Confidence 00 00023567888999999999999999999998764 4578899999999999999999
Q ss_pred HHHHHHHHHHcCCCcC----HHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHH
Q 036198 291 CFSLLGHMINSGCLPD----VSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYG 366 (499)
Q Consensus 291 a~~~~~~m~~~~~~~~----~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~ 366 (499)
|.+.++.+.+.+..+. ...+..+...+.+.|++++|.+.|+++.+... .+...+..+...+.+.|++++|.++++
T Consensus 160 A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~ 238 (389)
T PRK11788 160 AIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAADP-QCVRASILLGDLALAQGDYAAAIEALE 238 (389)
T ss_pred HHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCc-CCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 9999999987653322 12455677788899999999999999987642 246678888899999999999999999
Q ss_pred HHHHCCCCcChhhHHHHHHHHHhcCCchHHHHHHHHHhHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC
Q 036198 367 RMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLP 446 (499)
Q Consensus 367 ~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~ 446 (499)
++.+.+......+++.+..+|...|++++|...++.+.+. .|+...+..+...+.+.|++++|..+++++.+. .|+
T Consensus 239 ~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~ 314 (389)
T PRK11788 239 RVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE--YPGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPS 314 (389)
T ss_pred HHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcC
Confidence 9987643233567889999999999999999999999876 466667788899999999999999999998876 488
Q ss_pred HHHHHHHHHHHHh---cCCHHHHHHHHHHHHhhc
Q 036198 447 YRKFDSYLMQLSV---IGDLGAIHKLSDHMRKFY 477 (499)
Q Consensus 447 ~~~~~~ll~~~~~---~g~~~~a~~~~~~m~~~~ 477 (499)
..++..++..+.. .|+.+++..++++|.+..
T Consensus 315 ~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~ 348 (389)
T PRK11788 315 LRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQ 348 (389)
T ss_pred HHHHHHHHHHhhhccCCccchhHHHHHHHHHHHH
Confidence 8899988887775 568999999999888744
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=4.8e-19 Score=171.82 Aligned_cols=315 Identities=15% Similarity=0.141 Sum_probs=251.9
Q ss_pred CCCHHHHHHHHHccCCChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHHHcCCCcccHHH
Q 036198 78 PLTTDSVVGVLQRFQFEEKIAFRFFMWAGHQDNYAHEPLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDV 157 (499)
Q Consensus 78 ~~~~~~~~~~l~~~~~~~~~a~~~f~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~ 157 (499)
......+..+........+.|...|..+.... +.+..++..+...+. +.|++++|..+++.+...... +.
T Consensus 34 ~~~~~y~~g~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~----~~g~~~~A~~~~~~~l~~~~~--~~-- 103 (389)
T PRK11788 34 RLSRDYFKGLNFLLNEQPDKAIDLFIEMLKVD--PETVELHLALGNLFR----RRGEVDRAIRIHQNLLSRPDL--TR-- 103 (389)
T ss_pred hccHHHHHHHHHHhcCChHHHHHHHHHHHhcC--cccHHHHHHHHHHHH----HcCcHHHHHHHHHHHhcCCCC--CH--
Confidence 34444444444445566677888888875542 235678888989998 999999999999998875410 00
Q ss_pred HHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHhhcCCCCChhhHHHHHHHHHHHHHHcCCCCCHHHH
Q 036198 158 LLMILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQTLEEMIQMGHAPDNFTY 237 (499)
Q Consensus 158 ~~~~l~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~~~~~la~~~~~~m~~~g~~p~~~~~ 237 (499)
......+..+...|.+.|++++|..+|+++.+. .+++..++
T Consensus 104 ----------------~~~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~-----------------------~~~~~~~~ 144 (389)
T PRK11788 104 ----------------EQRLLALQELGQDYLKAGLLDRAEELFLQLVDE-----------------------GDFAEGAL 144 (389)
T ss_pred ----------------HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcC-----------------------CcchHHHH
Confidence 012356889999999999999999999998652 23467788
Q ss_pred HHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHhHHHHH
Q 036198 238 NTAIDTFCKARMVTEAADLFEFMRTKGSTISSPT---AKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVL 314 (499)
Q Consensus 238 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~p~---~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll 314 (499)
..++..+.+.|++++|.+.++.+.+.+.. .+. ...+..+...+...|++++|...|+++.+.. +.+...+..+.
T Consensus 145 ~~la~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la 221 (389)
T PRK11788 145 QQLLEIYQQEKDWQKAIDVAERLEKLGGD--SLRVEIAHFYCELAQQALARGDLDAARALLKKALAAD-PQCVRASILLG 221 (389)
T ss_pred HHHHHHHHHhchHHHHHHHHHHHHHhcCC--cchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHC-cCCHHHHHHHH
Confidence 99999999999999999999999887621 111 2245667778899999999999999998764 34566788888
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcChhhHHHHHHHHHhcCCch
Q 036198 315 EGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPD 394 (499)
Q Consensus 315 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~ 394 (499)
..+.+.|++++|.++++++.+.+......+++.+..+|++.|++++|...++++.+.. |+...+..+...+.+.|+++
T Consensus 222 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~~la~~~~~~g~~~ 299 (389)
T PRK11788 222 DLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEY--PGADLLLALAQLLEEQEGPE 299 (389)
T ss_pred HHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCchHHHHHHHHHHHhCCHH
Confidence 9999999999999999999876433335678899999999999999999999998864 67677789999999999999
Q ss_pred HHHHHHHHHhHCCCCCCHHHHHHHHHHHHh---CCCHHHHHHHHHHHHHCCCCCCHH
Q 036198 395 GAFETWHEMDKRGCAQDVDTYCVMIDGLFD---CSKVEEACFLLEEVVNKGLKLPYR 448 (499)
Q Consensus 395 ~a~~~~~~m~~~~~~p~~~~~~~li~~~~~---~g~~~~a~~~~~~m~~~~~~p~~~ 448 (499)
+|..+++++.+. .|+..++..++..+.. .|+.+++..++++|.++++.|++.
T Consensus 300 ~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 300 AAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred HHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCC
Confidence 999999998875 6899999988887774 568999999999999988887776
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.5e-15 Score=154.92 Aligned_cols=334 Identities=10% Similarity=0.028 Sum_probs=255.3
Q ss_pred HHHHHHHHhcchhhhhhHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhCCChHHHH
Q 036198 118 YNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLMILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAE 197 (499)
Q Consensus 118 ~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 197 (499)
.-.++..+. +.|+++.|..+++....... -+...+..++.+....|++++|.
T Consensus 45 ~~~~~~~~~----~~g~~~~A~~l~~~~l~~~p------------------------~~~~~l~~l~~~~l~~g~~~~A~ 96 (656)
T PRK15174 45 IILFAIACL----RKDETDVGLTLLSDRVLTAK------------------------NGRDLLRRWVISPLASSQPDAVL 96 (656)
T ss_pred HHHHHHHHH----hcCCcchhHHHhHHHHHhCC------------------------CchhHHHHHhhhHhhcCCHHHHH
Confidence 334455566 88999999999999887762 23445555666666677777777
Q ss_pred HHHHHhhcCCCCChhhHHHH------------HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCC
Q 036198 198 TICKRVKNKVKPNANTYNIL------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGS 265 (499)
Q Consensus 198 ~~~~~m~~~~~p~~~~~~~l------------a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~ 265 (499)
+.|+++....|.+...+..+ |...+++..... +.+...+..+...+...|++++|...++.+....
T Consensus 97 ~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~- 174 (656)
T PRK15174 97 QVVNKLLAVNVCQPEDVLLVASVLLKSKQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQEV- 174 (656)
T ss_pred HHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-
Confidence 77777776545555554444 666666666542 2257788889999999999999999999887765
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhH
Q 036198 266 TISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTY 345 (499)
Q Consensus 266 ~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~ 345 (499)
+.+...+..+ ..+...|++++|...++.+.+....++...+..+..++...|++++|...++...+.+. .+...+
T Consensus 175 ---P~~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p-~~~~~~ 249 (656)
T PRK15174 175 ---PPRGDMIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGL-DGAALR 249 (656)
T ss_pred ---CCCHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CCHHHH
Confidence 2233344333 34788999999999999988764334455566667889999999999999999988753 367788
Q ss_pred HHHHHHHHHcCCHHH----HHHHHHHHHHCCCCcChhhHHHHHHHHHhcCCchHHHHHHHHHhHCCCCCCHHHHHHHHHH
Q 036198 346 NCFLKVLCDNKNGDE----ALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDG 421 (499)
Q Consensus 346 ~~li~~~~~~g~~~~----a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~ 421 (499)
..+...+...|++++ |...|++..+.. +.+...+..+...+...|++++|...+++..+.. +.+...+..+...
T Consensus 250 ~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~-P~~~~a~~~La~~ 327 (656)
T PRK15174 250 RSLGLAYYQSGRSREAKLQAAEHWRHALQFN-SDNVRIVTLYADALIRTGQNEKAIPLLQQSLATH-PDLPYVRAMYARA 327 (656)
T ss_pred HHHHHHHHHcCCchhhHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 889999999999986 899999998754 2356788999999999999999999999998763 2245667788889
Q ss_pred HHhCCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhhcChhHHHHHHHHHh
Q 036198 422 LFDCSKVEEACFLLEEVVNKGLKLPY-RKFDSYLMQLSVIGDLGAIHKLSDHMRKFYNPVIARRLALNQK 490 (499)
Q Consensus 422 ~~~~g~~~~a~~~~~~m~~~~~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~ 490 (499)
+.+.|++++|...++++...+ |+. ..+..+..++...|+.++|.+.+++..+..+......|.-...
T Consensus 328 l~~~G~~~eA~~~l~~al~~~--P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~~~~~~~ea~~ 395 (656)
T PRK15174 328 LRQVGQYTAASDEFVQLAREK--GVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARASHLPQSFEEGLL 395 (656)
T ss_pred HHHCCCHHHHHHHHHHHHHhC--ccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhhchhhHHHHHH
Confidence 999999999999999998775 443 3344456788999999999999999999888877766654433
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.7e-14 Score=147.53 Aligned_cols=348 Identities=11% Similarity=-0.025 Sum_probs=261.9
Q ss_pred CChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHHhhhcC
Q 036198 93 FEEKIAFRFFMWAGHQDNYAHEPLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLMILKQYTEKIKVK 172 (499)
Q Consensus 93 ~~~~~a~~~f~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~l~~~~~~~~~~ 172 (499)
...+.|...|+.+.. ..|+...|..+..++. +.|++++|.+.++...+..
T Consensus 141 ~~~~~Ai~~y~~al~---~~p~~~~~~n~a~~~~----~l~~~~~Ai~~~~~al~l~----------------------- 190 (615)
T TIGR00990 141 KDFNKAIKLYSKAIE---CKPDPVYYSNRAACHN----ALGDWEKVVEDTTAALELD----------------------- 190 (615)
T ss_pred CCHHHHHHHHHHHHh---cCCchHHHHHHHHHHH----HhCCHHHHHHHHHHHHHcC-----------------------
Confidence 455678888887643 3567788888888888 8999999999999988765
Q ss_pred CCCCHHHHHHHHHHHHhCCChHHHHHHHHHhhc------------------------------CCCCChhhH--------
Q 036198 173 TQPEINALNLLLDALCKCGLVDYAETICKRVKN------------------------------KVKPNANTY-------- 214 (499)
Q Consensus 173 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~------------------------------~~~p~~~~~-------- 214 (499)
+.+..+|..+..+|...|++++|..-|..... ..+++...+
T Consensus 191 -p~~~~a~~~~a~a~~~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~ 269 (615)
T TIGR00990 191 -PDYSKALNRRANAYDGLGKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQ 269 (615)
T ss_pred -CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHH
Confidence 23455777777777888887777654432210 000100000
Q ss_pred -------------------------HH---------------HHHHHHHHHHHcC-CCC-CHHHHHHHHHHHHhcCCHhH
Q 036198 215 -------------------------NI---------------LGMQTLEEMIQMG-HAP-DNFTYNTAIDTFCKARMVTE 252 (499)
Q Consensus 215 -------------------------~~---------------la~~~~~~m~~~g-~~p-~~~~~~~li~~~~~~g~~~~ 252 (499)
.. -|.+.|+...+.+ ..| ....|+.+..++...|++++
T Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~e 349 (615)
T TIGR00990 270 SFRPKPRPAGLEDSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLE 349 (615)
T ss_pred HccCCcchhhhhcccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHH
Confidence 00 0455666666654 233 45678888888999999999
Q ss_pred HHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHH
Q 036198 253 AADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEE 332 (499)
Q Consensus 253 a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~ 332 (499)
|+..|++..+.. +-....|..+...+...|++++|...|+...+.. +.+...|..+...+...|++++|...|++
T Consensus 350 A~~~~~kal~l~----P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~k 424 (615)
T TIGR00990 350 ALADLSKSIELD----PRVTQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQK 424 (615)
T ss_pred HHHHHHHHHHcC----CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 999999998864 3346788888999999999999999999998764 44678888899999999999999999999
Q ss_pred HHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcChhhHHHHHHHHHhcCCchHHHHHHHHHhHCCCCCCH
Q 036198 333 MGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDV 412 (499)
Q Consensus 333 m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~ 412 (499)
..+... .+...+..+...+.+.|++++|...|++..+.. +.+...++.+...+...|++++|.+.|+...+.....+.
T Consensus 425 al~l~P-~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~ 502 (615)
T TIGR00990 425 SIDLDP-DFIFSHIQLGVTQYKEGSIASSMATFRRCKKNF-PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKP 502 (615)
T ss_pred HHHcCc-cCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCcccc
Confidence 988753 256778888889999999999999999988753 234678899999999999999999999998775321111
Q ss_pred H------HHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCh
Q 036198 413 D------TYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHMRKFYNP 479 (499)
Q Consensus 413 ~------~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~ 479 (499)
. .++.....+...|++++|.+++++...... .+...+..+...+...|++++|.+++++..+....
T Consensus 503 ~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p-~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~~ 574 (615)
T TIGR00990 503 MYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDP-ECDIAVATMAQLLLQQGDVDEALKLFERAAELART 574 (615)
T ss_pred ccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhcc
Confidence 1 122222333446999999999999887753 34567889999999999999999999998876553
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.79 E-value=7.9e-15 Score=131.63 Aligned_cols=292 Identities=18% Similarity=0.304 Sum_probs=220.6
Q ss_pred CHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHHHcCCCcccHHHHHHHHHH----------------HHHh---------
Q 036198 114 EPLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLMILKQ----------------YTEK--------- 168 (499)
Q Consensus 114 ~~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~l~~----------------~~~~--------- 168 (499)
.+.+=|.|+.... .|.+..+.-+|+.|.+.|. +.+...-..+++. |..+
T Consensus 115 ~V~~E~nL~kmIS-----~~EvKDs~ilY~~m~~e~~-~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~ 188 (625)
T KOG4422|consen 115 QVETENNLLKMIS-----SREVKDSCILYERMRSENV-DVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTS 188 (625)
T ss_pred hhcchhHHHHHHh-----hcccchhHHHHHHHHhcCC-CCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhcccccccccc
Confidence 3556778887776 6788999999999999986 4444443333332 2222
Q ss_pred ----------hhcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHhhc-CCCCChhhHHHH--------HHHHHHHHHHcC
Q 036198 169 ----------IKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKN-KVKPNANTYNIL--------GMQTLEEMIQMG 229 (499)
Q Consensus 169 ----------~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~~~p~~~~~~~l--------a~~~~~~m~~~g 229 (499)
...-.+.+..+|..+|.++|+--..+.|.+++++-.+ ..+.+..+||.+ ..+++.+|....
T Consensus 189 sWK~G~vAdL~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~K~Lv~EMisqk 268 (625)
T KOG4422|consen 189 SWKSGAVADLLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVGKKLVAEMISQK 268 (625)
T ss_pred ccccccHHHHHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhccHHHHHHHHHhh
Confidence 1112344677999999999999999999999999876 578899999998 788999999999
Q ss_pred CCCCHHHHHHHHHHHHhcCCHhH----HHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHH-HHHHHHHHHHc---
Q 036198 230 HAPDNFTYNTAIDTFCKARMVTE----AADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEE-CFSLLGHMINS--- 301 (499)
Q Consensus 230 ~~p~~~~~~~li~~~~~~g~~~~----a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~-a~~~~~~m~~~--- 301 (499)
..||..|||+++.+.++.|+++. |.+++.+|++.| +.|+..+|..+|..+++.++..+ +..++.++...
T Consensus 269 m~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiG---VePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltG 345 (625)
T KOG4422|consen 269 MTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIG---VEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTG 345 (625)
T ss_pred cCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhC---CCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhcc
Confidence 99999999999999999998776 567888999999 89999999999999999888744 55555555432
Q ss_pred -CC----CcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCC----CCCC---HhhHHHHHHHHHHcCCHHHHHHHHHHHH
Q 036198 302 -GC----LPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKG----YPPD---IVTYNCFLKVLCDNKNGDEALRLYGRMI 369 (499)
Q Consensus 302 -~~----~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~----~~p~---~~~~~~li~~~~~~g~~~~a~~~~~~m~ 369 (499)
.+ +.+...|...|..|.+..+.+-|.++..-+.... +.|+ ..-|.-+..+.|+....+.....|+.|.
T Consensus 346 K~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lV 425 (625)
T KOG4422|consen 346 KTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLV 425 (625)
T ss_pred CcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 22 2245667788888889999888888776654331 2222 2345667777788888888888888887
Q ss_pred HCCCCcChhhHHHHHHHHHhcCCchHHHHHHHHHhHCCCCCCHHH
Q 036198 370 EVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDT 414 (499)
Q Consensus 370 ~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~ 414 (499)
-.-..|+..+...++++..-.|.++-.-++|..+...|...+...
T Consensus 426 P~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l 470 (625)
T KOG4422|consen 426 PSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDL 470 (625)
T ss_pred cceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHH
Confidence 666667888888888888888888887777777776654433333
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.6e-14 Score=135.46 Aligned_cols=349 Identities=14% Similarity=0.128 Sum_probs=260.3
Q ss_pred CHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHHh-----------hhcCCCCCHHH-HH
Q 036198 114 EPLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLMILKQYTEK-----------IKVKTQPEINA-LN 181 (499)
Q Consensus 114 ~~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~l~~~~~~-----------~~~~~~~~~~~-~~ 181 (499)
-..+|+.+.+++- ..|++..|+.+++.+.+... .-.+.+..+.-++... ....+.|+... .+
T Consensus 115 ~ae~ysn~aN~~k----erg~~~~al~~y~~aiel~p--~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s 188 (966)
T KOG4626|consen 115 GAEAYSNLANILK----ERGQLQDALALYRAAIELKP--KFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARS 188 (966)
T ss_pred HHHHHHHHHHHHH----HhchHHHHHHHHHHHHhcCc--hhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhc
Confidence 5688999999998 89999999999999998763 2222222222222211 11234454443 33
Q ss_pred HHHHHHHhCCChHHHHHHHHHhhcCCCCChhhHHHH------------HHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcC
Q 036198 182 LLLDALCKCGLVDYAETICKRVKNKVKPNANTYNIL------------GMQTLEEMIQMGHAPD-NFTYNTAIDTFCKAR 248 (499)
Q Consensus 182 ~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~~~~~l------------a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g 248 (499)
.+.+..-..|++++|...|-+..+..+-=...|.-| |.+.|++... +.|+ ...|-.|...|...+
T Consensus 189 ~lgnLlka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvk--ldP~f~dAYiNLGnV~ke~~ 266 (966)
T KOG4626|consen 189 DLGNLLKAEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVK--LDPNFLDAYINLGNVYKEAR 266 (966)
T ss_pred chhHHHHhhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhc--CCCcchHHHhhHHHHHHHHh
Confidence 344444556777777777777665433334444444 6666666654 3444 457888888899999
Q ss_pred CHhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcC-HHhHHHHHHHHHhcCCHHHHH
Q 036198 249 MVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPD-VSTYKEVLEGMCLAGKVEEAY 327 (499)
Q Consensus 249 ~~~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~ll~~~~~~g~~~~a~ 327 (499)
.+++|...+.+..... +-....+..+...|-..|.++.|.+.|++..+. .|+ ...|+.|..++-..|++.+|+
T Consensus 267 ~~d~Avs~Y~rAl~lr----pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~--~P~F~~Ay~NlanALkd~G~V~ea~ 340 (966)
T KOG4626|consen 267 IFDRAVSCYLRALNLR----PNHAVAHGNLACIYYEQGLLDLAIDTYKRALEL--QPNFPDAYNNLANALKDKGSVTEAV 340 (966)
T ss_pred cchHHHHHHHHHHhcC----CcchhhccceEEEEeccccHHHHHHHHHHHHhc--CCCchHHHhHHHHHHHhccchHHHH
Confidence 9999999998887753 335677888888888899999999999998876 344 678999999999999999999
Q ss_pred HHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcC-hhhHHHHHHHHHhcCCchHHHHHHHHHhHC
Q 036198 328 KFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPS-VQTYNMLISMYFELGEPDGAFETWHEMDKR 406 (499)
Q Consensus 328 ~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 406 (499)
..+......... -..+.+.|...|...|.+++|..+|....+ +.|. ...++.|...|-.+|++++|...+++...
T Consensus 341 ~cYnkaL~l~p~-hadam~NLgni~~E~~~~e~A~~ly~~al~--v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr- 416 (966)
T KOG4626|consen 341 DCYNKALRLCPN-HADAMNNLGNIYREQGKIEEATRLYLKALE--VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALR- 416 (966)
T ss_pred HHHHHHHHhCCc-cHHHHHHHHHHHHHhccchHHHHHHHHHHh--hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh-
Confidence 999988876432 456788899999999999999999998877 3455 45788899999999999999999998876
Q ss_pred CCCCC-HHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcChhHH
Q 036198 407 GCAQD-VDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHMRKFYNPVIA 482 (499)
Q Consensus 407 ~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~ 482 (499)
+.|+ ...|+.+-..|-..|+++.|.+.+.+....+.. -...++.|...|..+|++.+|+.-++...+..|..+.
T Consensus 417 -I~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt-~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpd 491 (966)
T KOG4626|consen 417 -IKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPT-FAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPD 491 (966)
T ss_pred -cCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcH-HHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCch
Confidence 4665 457888888999999999999999888876521 3567888999999999999999999998887665443
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.6e-13 Score=140.10 Aligned_cols=324 Identities=12% Similarity=0.060 Sum_probs=226.3
Q ss_pred HHHhccCCCchHHHHHhhCC-----CCCCHHHHH--HHHHccCCChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhcch
Q 036198 57 AIIDNSNAYDNMEKALDSLG-----VPLTTDSVV--GVLQRFQFEEKIAFRFFMWAGHQDNYAHEPLAYNLMIDILSSTK 129 (499)
Q Consensus 57 ~l~~~~~~~~~~~~al~~~~-----~~~~~~~~~--~~l~~~~~~~~~a~~~f~~~~~~~~~~~~~~~~~~li~~~~~~~ 129 (499)
-++..+.+.|+..+|+..+. .+-+++.+. .+........+.|...|+.+..... .+...+..+...+.
T Consensus 47 ~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P--~~~~a~~~la~~l~--- 121 (656)
T PRK15174 47 LFAIACLRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNV--CQPEDVLLVASVLL--- 121 (656)
T ss_pred HHHHHHHhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCC--CChHHHHHHHHHHH---
Confidence 34455556677666665432 122222222 2223345556677777775543211 24555666666666
Q ss_pred hhhhhHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHhhcCCCC
Q 036198 130 YKAKQFRLVCSMLDYMKRNNKVFVPVDVLLMILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNKVKP 209 (499)
Q Consensus 130 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p 209 (499)
..|+++.|...+++..... +.+...+..+...+...|++++|...++.+...
T Consensus 122 -~~g~~~~Ai~~l~~Al~l~------------------------P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~--- 173 (656)
T PRK15174 122 -KSKQYATVADLAEQAWLAF------------------------SGNSQIFALHLRTLVLMDKELQAISLARTQAQE--- 173 (656)
T ss_pred -HcCCHHHHHHHHHHHHHhC------------------------CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHh---
Confidence 7777777777777776654 234567777777788888888887777765431
Q ss_pred ChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHH
Q 036198 210 NANTYNILGMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRME 289 (499)
Q Consensus 210 ~~~~~~~la~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~ 289 (499)
... +...+..+ ..+...|++++|...++.+.+.. ..++...+..+...+...|+++
T Consensus 174 -------------------~P~-~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~---~~~~~~~~~~l~~~l~~~g~~~ 229 (656)
T PRK15174 174 -------------------VPP-RGDMIATC-LSFLNKSRLPEDHDLARALLPFF---ALERQESAGLAVDTLCAVGKYQ 229 (656)
T ss_pred -------------------CCC-CHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcC---CCcchhHHHHHHHHHHHCCCHH
Confidence 111 23333333 34778899999999999987764 2234455556677888999999
Q ss_pred HHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHH----HHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHH
Q 036198 290 ECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEE----AYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLY 365 (499)
Q Consensus 290 ~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~----a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~ 365 (499)
+|...+++..+.. +.+...+..+...+...|++++ |...++...+... .+...+..+...+.+.|++++|...+
T Consensus 230 eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P-~~~~a~~~lg~~l~~~g~~~eA~~~l 307 (656)
T PRK15174 230 EAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNS-DNVRIVTLYADALIRTGQNEKAIPLL 307 (656)
T ss_pred HHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 9999999998764 4457777888899999999885 7899998887643 36778888999999999999999999
Q ss_pred HHHHHCCCCcChhhHHHHHHHHHhcCCchHHHHHHHHHhHCCCCCCHH-HHHHHHHHHHhCCCHHHHHHHHHHHHHCC
Q 036198 366 GRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVD-TYCVMIDGLFDCSKVEEACFLLEEVVNKG 442 (499)
Q Consensus 366 ~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~-~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 442 (499)
++..+... .+...+..+..++.+.|++++|...++.+.+. .|+.. .+..+..++...|+.++|...|++..+..
T Consensus 308 ~~al~l~P-~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~--~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~ 382 (656)
T PRK15174 308 QQSLATHP-DLPYVRAMYARALRQVGQYTAASDEFVQLARE--KGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQAR 382 (656)
T ss_pred HHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 99887542 34556777888999999999999999998875 34443 33445667889999999999999988764
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.4e-13 Score=150.18 Aligned_cols=366 Identities=12% Similarity=0.007 Sum_probs=207.0
Q ss_pred CCChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHHHcCCCcccHHHHH------------
Q 036198 92 QFEEKIAFRFFMWAGHQDNYAHEPLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLL------------ 159 (499)
Q Consensus 92 ~~~~~~a~~~f~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~------------ 159 (499)
....+.|...|+.+.... +.+...+..+...+. +.|++++|...|++..+..........+.
T Consensus 282 ~g~~~~A~~~l~~aL~~~--P~~~~a~~~Lg~~~~----~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~ 355 (1157)
T PRK11447 282 SGQGGKAIPELQQAVRAN--PKDSEALGALGQAYS----QQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLI 355 (1157)
T ss_pred CCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHH----HcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHH
Confidence 455567888887765432 126677777878887 88888888888888877665443321111
Q ss_pred -------------HHHHHHHHhhhcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHhhcCCCCChhhHHHH---------
Q 036198 160 -------------MILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNIL--------- 217 (499)
Q Consensus 160 -------------~~l~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~~~~~l--------- 217 (499)
..+..|.+.... .+.+...+..+...+...|++++|++.|++..+..+.+...+..+
T Consensus 356 ~~g~~~~~~g~~~eA~~~~~~Al~~-~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~~ 434 (1157)
T PRK11447 356 QQGDAALKANNLAQAERLYQQARQV-DNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQSP 434 (1157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCH
Confidence 111111111111 234567888899999999999999999999887655555555444
Q ss_pred --HHHHHHHHHHcCC--------CCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCC
Q 036198 218 --GMQTLEEMIQMGH--------APDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDR 287 (499)
Q Consensus 218 --a~~~~~~m~~~g~--------~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~ 287 (499)
|..+++.+..... ......+..+...+...|++++|++.|++..+.. +-+...+..+...|.+.|+
T Consensus 435 ~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~----P~~~~~~~~LA~~~~~~G~ 510 (1157)
T PRK11447 435 EKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD----PGSVWLTYRLAQDLRQAGQ 510 (1157)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC----CCCHHHHHHHHHHHHHcCC
Confidence 3333332211100 0012234556677888999999999999998875 3456778888889999999
Q ss_pred HHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHh---------hHHHHHHHHHHcCCH
Q 036198 288 MEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIV---------TYNCFLKVLCDNKNG 358 (499)
Q Consensus 288 ~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~---------~~~~li~~~~~~g~~ 358 (499)
+++|...++++.+.. +.+...+..+...+...++.++|...++.+......++.. .+..+...+...|+.
T Consensus 511 ~~~A~~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~ 589 (1157)
T PRK11447 511 RSQADALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKE 589 (1157)
T ss_pred HHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCH
Confidence 999999999988653 2234444434444556667777766666543221111111 111223344445555
Q ss_pred HHHHHHHHHHHHCCCCcChhhHHHHHHHHHhcCCchHHHHHHHHHhHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 036198 359 DEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEV 438 (499)
Q Consensus 359 ~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m 438 (499)
++|.++++. .+.+...+..+...+.+.|++++|.+.|+...+.. +.+...+..+...|...|+.++|.+.++..
T Consensus 590 ~eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~-P~~~~a~~~la~~~~~~g~~~eA~~~l~~l 663 (1157)
T PRK11447 590 AEAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTRE-PGNADARLGLIEVDIAQGDLAAARAQLAKL 663 (1157)
T ss_pred HHHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 555555441 11233334444445555555555555555554431 123444445555555555555555555544
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 036198 439 VNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHMRKF 476 (499)
Q Consensus 439 ~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~ 476 (499)
.+... .+...+..+..++...|++++|.++++++.+.
T Consensus 664 l~~~p-~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~ 700 (1157)
T PRK11447 664 PATAN-DSLNTQRRVALAWAALGDTAAAQRTFNRLIPQ 700 (1157)
T ss_pred hccCC-CChHHHHHHHHHHHhCCCHHHHHHHHHHHhhh
Confidence 43321 12333344444455555555555555555443
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=3e-13 Score=147.60 Aligned_cols=294 Identities=10% Similarity=-0.002 Sum_probs=181.1
Q ss_pred CCHHHHHHHHHHHHhCCChHHHHHHHHHhhcCCCCCh--hhH----------HHH--------------HHHHHHHHHHc
Q 036198 175 PEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNA--NTY----------NIL--------------GMQTLEEMIQM 228 (499)
Q Consensus 175 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~--~~~----------~~l--------------a~~~~~~m~~~ 228 (499)
.+...+..+...+.+.|++++|+..|++..+..+.+. ..| ..+ |...+++..+.
T Consensus 301 ~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~ 380 (1157)
T PRK11447 301 KDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQV 380 (1157)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 3677888999999999999999999998776422221 111 111 67777777765
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC----
Q 036198 229 GHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCL---- 304 (499)
Q Consensus 229 g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~---- 304 (499)
.. .+...+..+..++...|++++|++.|++..+.. +.+...+..+...+. .++.++|..+++.+......
T Consensus 381 ~P-~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~----p~~~~a~~~L~~l~~-~~~~~~A~~~l~~l~~~~~~~~~~ 454 (1157)
T PRK11447 381 DN-TDSYAVLGLGDVAMARKDYAAAERYYQQALRMD----PGNTNAVRGLANLYR-QQSPEKALAFIASLSASQRRSIDD 454 (1157)
T ss_pred CC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC----CCCHHHHHHHHHHHH-hcCHHHHHHHHHhCCHHHHHHHHH
Confidence 43 356677788888999999999999999888764 233444444444442 23344444444433211000
Q ss_pred ----cCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcChhh-
Q 036198 305 ----PDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQT- 379 (499)
Q Consensus 305 ----~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~- 379 (499)
.....+..+...+...|++++|.+.|++..+.... +...+..+...|.+.|++++|...++++.+... .+...
T Consensus 455 ~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~-~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P-~~~~~~ 532 (1157)
T PRK11447 455 IERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPG-SVWLTYRLAQDLRQAGQRSQADALMRRLAQQKP-NDPEQV 532 (1157)
T ss_pred HHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCHHHH
Confidence 00112223334444455555555555554443221 333444444455555555555555555443211 11111
Q ss_pred -------------------------------------------HHHHHHHHHhcCCchHHHHHHHHHhHCCCCCCHHHHH
Q 036198 380 -------------------------------------------YNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYC 416 (499)
Q Consensus 380 -------------------------------------------~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~ 416 (499)
+..+...+...|+.++|.++++. .+.+...+.
T Consensus 533 ~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~-----~p~~~~~~~ 607 (1157)
T PRK11447 533 YAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQ-----QPPSTRIDL 607 (1157)
T ss_pred HHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHh-----CCCCchHHH
Confidence 12234455666777777766652 234556677
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcChhHH
Q 036198 417 VMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHMRKFYNPVIA 482 (499)
Q Consensus 417 ~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~ 482 (499)
.+...+.+.|+.++|...+++..+... .+...+..+...+...|++++|.+.++...+..+....
T Consensus 608 ~La~~~~~~g~~~~A~~~y~~al~~~P-~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~~~ 672 (1157)
T PRK11447 608 TLADWAQQRGDYAAARAAYQRVLTREP-GNADARLGLIEVDIAQGDLAAARAQLAKLPATANDSLN 672 (1157)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCChH
Confidence 788889999999999999999998763 36788999999999999999999999998887655443
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.72 E-value=5.4e-13 Score=120.01 Aligned_cols=345 Identities=15% Similarity=0.147 Sum_probs=258.3
Q ss_pred CCHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHHHcCCCcccHHHHHHHHH---------HHHHhhhcCCCCCHHHHHHH
Q 036198 113 HEPLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLMILK---------QYTEKIKVKTQPEINALNLL 183 (499)
Q Consensus 113 ~~~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~l~---------~~~~~~~~~~~~~~~~~~~l 183 (499)
.+..+|..+|.++| +--+.+.|.+++++-....+ ...-++++.++. ...+|....+.||..++|++
T Consensus 205 KT~et~s~mI~Gl~----K~~~~ERA~~L~kE~~~~k~-kv~~~aFN~lI~~~S~~~~K~Lv~EMisqkm~Pnl~TfNal 279 (625)
T KOG4422|consen 205 KTDETVSIMIAGLC----KFSSLERARELYKEHRAAKG-KVYREAFNGLIGASSYSVGKKLVAEMISQKMTPNLFTFNAL 279 (625)
T ss_pred CCchhHHHHHHHHH----HHHhHHHHHHHHHHHHHhhh-eeeHHhhhhhhhHHHhhccHHHHHHHHHhhcCCchHhHHHH
Confidence 47789999999999 88999999999999776654 566667766664 35667888899999999999
Q ss_pred HHHHHhCCChHHHHHHHHHhhcCCCCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhH-HHHHHHHHHH
Q 036198 184 LDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTE-AADLFEFMRT 262 (499)
Q Consensus 184 i~~~~~~g~~~~A~~~~~~m~~~~~p~~~~~~~la~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~-a~~~~~~m~~ 262 (499)
+.+..+.|+++.|.+.+ .+++.+|++.|+.|...+|..+|..+++-++..+ |..+..++..
T Consensus 280 L~c~akfg~F~~ar~aa------------------lqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N 341 (625)
T KOG4422|consen 280 LSCAAKFGKFEDARKAA------------------LQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQN 341 (625)
T ss_pred HHHHHHhcchHHHHHHH------------------HHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHH
Confidence 99999999999988874 5568899999999999999999999999888754 5555555543
Q ss_pred ----cCCCCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc----CCCcCH---HhHHHHHHHHHhcCCHHHHHHHH
Q 036198 263 ----KGSTIS-SPTAKTYAIMIVALVQNDRMEECFSLLGHMINS----GCLPDV---STYKEVLEGMCLAGKVEEAYKFL 330 (499)
Q Consensus 263 ----~~~~~~-~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~----~~~~~~---~~~~~ll~~~~~~g~~~~a~~~~ 330 (499)
+...+. +-+..-|...++.|.+..+.+-|.++..-+... -+.|+. .-|..+....|.....+.....|
T Consensus 342 ~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y 421 (625)
T KOG4422|consen 342 SLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWY 421 (625)
T ss_pred hhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 121112 224567788899999999999999987666532 123332 33667888889999999999999
Q ss_pred HHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcChhhHHHHHHHHHhcC-Cc--h------H-----H
Q 036198 331 EEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELG-EP--D------G-----A 396 (499)
Q Consensus 331 ~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~-~~--~------~-----a 396 (499)
+.|.-.-.-|+..+...++.+..-.|.++-.-+++..+...|..-....-.-++..+++.. +. . . |
T Consensus 422 ~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~a 501 (625)
T KOG4422|consen 422 EDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCA 501 (625)
T ss_pred HHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHH
Confidence 9998887788999999999999999999999999999988875555544444555555443 11 0 0 1
Q ss_pred HHH-------HHHHhHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCC----CCCHHHHHHHHHHHHhcCCHHH
Q 036198 397 FET-------WHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL----KLPYRKFDSYLMQLSVIGDLGA 465 (499)
Q Consensus 397 ~~~-------~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~----~p~~~~~~~ll~~~~~~g~~~~ 465 (499)
..+ -.+|++. .-.....+.+.-.+.+.|+.++|.+++..+.+++- .|......-++++-....+...
T Consensus 502 ad~~e~~e~~~~R~r~~--~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsq 579 (625)
T KOG4422|consen 502 ADIKEAYESQPIRQRAQ--DWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQ 579 (625)
T ss_pred HHHHHHHHhhHHHHHhc--cCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHH
Confidence 111 1223333 33445677777788899999999999999966542 2444455577788888999999
Q ss_pred HHHHHHHHHhhcChhHH
Q 036198 466 IHKLSDHMRKFYNPVIA 482 (499)
Q Consensus 466 a~~~~~~m~~~~~~~~~ 482 (499)
|...++-|.....+..-
T Consensus 580 A~~~lQ~a~~~n~~~~E 596 (625)
T KOG4422|consen 580 AIEVLQLASAFNLPICE 596 (625)
T ss_pred HHHHHHHHHHcCchhhh
Confidence 99999999776666544
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=7.3e-12 Score=131.32 Aligned_cols=235 Identities=11% Similarity=0.057 Sum_probs=169.8
Q ss_pred CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHhHHH
Q 036198 233 DNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKE 312 (499)
Q Consensus 233 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ 312 (499)
+...|..+..++.. ++.++|...+.+..... |+......+...+...|++++|...|+++... +|+...+..
T Consensus 476 ~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~-----Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~ 547 (987)
T PRK09782 476 DAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQ-----PDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLA 547 (987)
T ss_pred CHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhC-----CchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHH
Confidence 34445555555554 66677777777666543 55444334444556788888888888887654 344455566
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcChhhHHHHHHHHHhcCC
Q 036198 313 VLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGE 392 (499)
Q Consensus 313 ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~ 392 (499)
+..++.+.|+.++|...++...+.+. .....+..+.......|++++|...+++..+.. |+...+..+..++.+.|+
T Consensus 548 la~all~~Gd~~eA~~~l~qAL~l~P-~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~--P~~~a~~~LA~~l~~lG~ 624 (987)
T PRK09782 548 AANTAQAAGNGAARDRWLQQAEQRGL-GDNALYWWLHAQRYIPGQPELALNDLTRSLNIA--PSANAYVARATIYRQRHN 624 (987)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhcCC-ccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhC--CCHHHHHHHHHHHHHCCC
Confidence 67778888888888888888877642 223333333344445689999999998888754 677788888888999999
Q ss_pred chHHHHHHHHHhHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 036198 393 PDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDH 472 (499)
Q Consensus 393 ~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~ 472 (499)
.++|...+++..+.. +-+...+..+...+...|+.++|...+++..+... -+...+..+..++...|++++|...+++
T Consensus 625 ~deA~~~l~~AL~l~-Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P-~~~~a~~nLA~al~~lGd~~eA~~~l~~ 702 (987)
T PRK09782 625 VPAAVSDLRAALELE-PNNSNYQAALGYALWDSGDIAQSREMLERAHKGLP-DDPALIRQLAYVNQRLDDMAATQHYARL 702 (987)
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 999999999888763 22556677777788889999999999998888753 3677888888899999999999999999
Q ss_pred HHhhcChh
Q 036198 473 MRKFYNPV 480 (499)
Q Consensus 473 m~~~~~~~ 480 (499)
..+..+..
T Consensus 703 Al~l~P~~ 710 (987)
T PRK09782 703 VIDDIDNQ 710 (987)
T ss_pred HHhcCCCC
Confidence 88766543
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.3e-12 Score=136.48 Aligned_cols=384 Identities=11% Similarity=-0.009 Sum_probs=264.1
Q ss_pred HhccCCCchHHHHHhhC---C--CCCCHHHH--HHHHHccCCChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhcchhh
Q 036198 59 IDNSNAYDNMEKALDSL---G--VPLTTDSV--VGVLQRFQFEEKIAFRFFMWAGHQDNYAHEPLAYNLMIDILSSTKYK 131 (499)
Q Consensus 59 ~~~~~~~~~~~~al~~~---~--~~~~~~~~--~~~l~~~~~~~~~a~~~f~~~~~~~~~~~~~~~~~~li~~~~~~~~~ 131 (499)
+....+.|+..+|++.+ . .+.+...+ ...+..-......|..+++.+.... +.+...+..+...+. .
T Consensus 22 ~~ia~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~la~~l~----~ 95 (765)
T PRK10049 22 LQIALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE--PQNDDYQRGLILTLA----D 95 (765)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHH----H
Confidence 33344667777776543 2 22333222 2334445666778888888764432 224666677777777 8
Q ss_pred hhhHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHhhcCCCCCh
Q 036198 132 AKQFRLVCSMLDYMKRNNKVFVPVDVLLMILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNA 211 (499)
Q Consensus 132 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~ 211 (499)
.|++++|...+++..+.. +.+.. +..+..++...|+.++|...++++.+..|.+.
T Consensus 96 ~g~~~eA~~~l~~~l~~~------------------------P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~ 150 (765)
T PRK10049 96 AGQYDEALVKAKQLVSGA------------------------PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQ 150 (765)
T ss_pred CCCHHHHHHHHHHHHHhC------------------------CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH
Confidence 889999999998887765 24556 88889999999999999999999988666665
Q ss_pred hhHHHH------------HHHHHHHHHHcCCCCCH------HHHHHHHHHHH-----hcCCH---hHHHHHHHHHHHcCC
Q 036198 212 NTYNIL------------GMQTLEEMIQMGHAPDN------FTYNTAIDTFC-----KARMV---TEAADLFEFMRTKGS 265 (499)
Q Consensus 212 ~~~~~l------------a~~~~~~m~~~g~~p~~------~~~~~li~~~~-----~~g~~---~~a~~~~~~m~~~~~ 265 (499)
..+..+ |+..++... ..|+. .....++.... ..+++ ++|++.++.+.+...
T Consensus 151 ~~~~~la~~l~~~~~~e~Al~~l~~~~---~~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~ 227 (765)
T PRK10049 151 QYPTEYVQALRNNRLSAPALGAIDDAN---LTPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWH 227 (765)
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHhCC---CCHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcc
Confidence 555444 333333222 12221 11122222222 22234 778888988886521
Q ss_pred CCCCCCHH-H----HHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-cCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 036198 266 TISSPTAK-T----YAIMIVALVQNDRMEECFSLLGHMINSGCL-PDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYP 339 (499)
Q Consensus 266 ~~~~p~~~-~----~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~-~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~ 339 (499)
..|+.. . ....+..+...|++++|...|+.+.+.+-. |+. .-..+..+|...|++++|...|+.+.+....
T Consensus 228 --~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~ 304 (765)
T PRK10049 228 --DNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPET 304 (765)
T ss_pred --cCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCC
Confidence 122221 1 112244556779999999999999987532 322 2223577899999999999999998765322
Q ss_pred C---CHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-----------CcC---hhhHHHHHHHHHhcCCchHHHHHHHH
Q 036198 340 P---DIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGC-----------WPS---VQTYNMLISMYFELGEPDGAFETWHE 402 (499)
Q Consensus 340 p---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~-----------~~~---~~~~~~li~~~~~~~~~~~a~~~~~~ 402 (499)
. ....+..+..++.+.|++++|..+++.+.+... .|+ ...+..+...+...|+.++|++++++
T Consensus 305 ~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~ 384 (765)
T PRK10049 305 IADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARE 384 (765)
T ss_pred CCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 1 124566677788999999999999999987531 123 23456677888999999999999999
Q ss_pred HhHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcChhH
Q 036198 403 MDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHMRKFYNPVI 481 (499)
Q Consensus 403 m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~ 481 (499)
+.... +-+...+..+...+...|++++|++.+++..... +-+...+......+...|++++|+.+++++.+.+|...
T Consensus 385 al~~~-P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~-Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~ 461 (765)
T PRK10049 385 LAYNA-PGNQGLRIDYASVLQARGWPRAAENELKKAEVLE-PRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQDP 461 (765)
T ss_pred HHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCH
Confidence 98762 4467788889999999999999999999998875 23466777777889999999999999999999877654
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.5e-12 Score=133.36 Aligned_cols=330 Identities=12% Similarity=-0.005 Sum_probs=239.9
Q ss_pred HHHHHHHHhcchhhhhhHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhCCChHHHH
Q 036198 118 YNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLMILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAE 197 (499)
Q Consensus 118 ~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 197 (499)
+......+. +.|+++.|...|++..... |+...|..+..+|.+.|++++|+
T Consensus 130 ~k~~G~~~~----~~~~~~~Ai~~y~~al~~~-------------------------p~~~~~~n~a~~~~~l~~~~~Ai 180 (615)
T TIGR00990 130 LKEKGNKAY----RNKDFNKAIKLYSKAIECK-------------------------PDPVYYSNRAACHNALGDWEKVV 180 (615)
T ss_pred HHHHHHHHH----HcCCHHHHHHHHHHHHhcC-------------------------CchHHHHHHHHHHHHhCCHHHHH
Confidence 334445555 8999999999999987654 67778999999999999999999
Q ss_pred HHHHHhhcCCCCChhhHHHH------------HHHHHHHHHHcC----------------------------CC----CC
Q 036198 198 TICKRVKNKVKPNANTYNIL------------GMQTLEEMIQMG----------------------------HA----PD 233 (499)
Q Consensus 198 ~~~~~m~~~~~p~~~~~~~l------------a~~~~~~m~~~g----------------------------~~----p~ 233 (499)
+.++...+..+.+...|..+ |...+......+ .. |.
T Consensus 181 ~~~~~al~l~p~~~~a~~~~a~a~~~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~ 260 (615)
T TIGR00990 181 EDTTAALELDPDYSKALNRRANAYDGLGKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPS 260 (615)
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCC
Confidence 99999887555555555544 322221111000 00 01
Q ss_pred HHHHHHH---------------------------HHHH------HhcCCHhHHHHHHHHHHHcCCCCCCCCHHHHHHHHH
Q 036198 234 NFTYNTA---------------------------IDTF------CKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIV 280 (499)
Q Consensus 234 ~~~~~~l---------------------------i~~~------~~~g~~~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~ 280 (499)
....... +... ...+++++|.+.|+...+.+.. .+.....|+.+..
T Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~-~~~~a~a~~~lg~ 339 (615)
T TIGR00990 261 VTFVGNYLQSFRPKPRPAGLEDSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKL-GEKEAIALNLRGT 339 (615)
T ss_pred HHHHHHHHHHccCCcchhhhhcccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCC-ChhhHHHHHHHHH
Confidence 0000000 0000 1235788999999999876521 1234567888888
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHH
Q 036198 281 ALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDE 360 (499)
Q Consensus 281 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~ 360 (499)
.+...|++++|...|+...+.. +-+...|..+...+...|++++|...|+...+... .+...|..+...+...|++++
T Consensus 340 ~~~~~g~~~eA~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~ 417 (615)
T TIGR00990 340 FKCLKGKHLEALADLSKSIELD-PRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNS-EDPDIYYHRAQLHFIKGEFAQ 417 (615)
T ss_pred HHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHH
Confidence 8999999999999999998763 23356788888899999999999999999887643 367888899999999999999
Q ss_pred HHHHHHHHHHCCCCcChhhHHHHHHHHHhcCCchHHHHHHHHHhHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 036198 361 ALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVN 440 (499)
Q Consensus 361 a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 440 (499)
|...|++..+.. +.+...+..+..++.+.|++++|...++...+.. +-+...|+.+...+...|++++|...|++...
T Consensus 418 A~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~ 495 (615)
T TIGR00990 418 AGKDYQKSIDLD-PDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNF-PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIE 495 (615)
T ss_pred HHHHHHHHHHcC-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 999999998864 2346677888889999999999999999988752 33577888899999999999999999999887
Q ss_pred CCCCCCHH------HHHHHHHHHHhcCCHHHHHHHHHHHHhhcChhH
Q 036198 441 KGLKLPYR------KFDSYLMQLSVIGDLGAIHKLSDHMRKFYNPVI 481 (499)
Q Consensus 441 ~~~~p~~~------~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~ 481 (499)
.....+.. .++.....+...|++++|.+++++..+..+...
T Consensus 496 l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~ 542 (615)
T TIGR00990 496 LEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPECD 542 (615)
T ss_pred cCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcH
Confidence 64321111 122222233446999999999999887765543
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.4e-13 Score=129.18 Aligned_cols=367 Identities=14% Similarity=0.111 Sum_probs=262.9
Q ss_pred cchHHHHHHHHHhccCCCchHHHHHhhC--CCCCCHHHHHHHH---Hc--cCCChHHHHHHHHHhhcCCCCCCCHHHHHH
Q 036198 48 VSDVAKLYEAIIDNSNAYDNMEKALDSL--GVPLTTDSVVGVL---QR--FQFEEKIAFRFFMWAGHQDNYAHEPLAYNL 120 (499)
Q Consensus 48 ~~~~~~~~~~l~~~~~~~~~~~~al~~~--~~~~~~~~~~~~l---~~--~~~~~~~a~~~f~~~~~~~~~~~~~~~~~~ 120 (499)
.+.-...|+.+.+.+...|++++|+..+ .++++|..+..-+ .. ..++...|...|....+ +.|+.....+
T Consensus 112 ~~q~ae~ysn~aN~~kerg~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alq---lnP~l~ca~s 188 (966)
T KOG4626|consen 112 NPQGAEAYSNLANILKERGQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQ---LNPDLYCARS 188 (966)
T ss_pred cchHHHHHHHHHHHHHHhchHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHh---cCcchhhhhc
Confidence 3445677888888888888888888754 3455554332222 11 12333455555554422 3345444444
Q ss_pred HHHHHhcchhhhhhHHHHHHHHHHHHHcCCCc-ccHHHHHHH----------HHHHHHhhhcCCCCC-HHHHHHHHHHHH
Q 036198 121 MIDILSSTKYKAKQFRLVCSMLDYMKRNNKVF-VPVDVLLMI----------LKQYTEKIKVKTQPE-INALNLLLDALC 188 (499)
Q Consensus 121 li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~-~~~~~~~~~----------l~~~~~~~~~~~~~~-~~~~~~li~~~~ 188 (499)
-+..+.+ ..|++++|...+.+..+..... ..+..+..+ ++.|.+ ...+.|+ ..+|-.|.+.|.
T Consensus 189 ~lgnLlk---a~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~e--AvkldP~f~dAYiNLGnV~k 263 (966)
T KOG4626|consen 189 DLGNLLK---AEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEE--AVKLDPNFLDAYINLGNVYK 263 (966)
T ss_pred chhHHHH---hhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHH--hhcCCCcchHHHhhHHHHHH
Confidence 4444442 5778888888887776654221 122222222 222222 2334554 357777777777
Q ss_pred hCCChHHHHHHHHHhhcCCCCChhhHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCC
Q 036198 189 KCGLVDYAETICKRVKNKVKPNANTYNILGMQTLEEMIQMGHAP-DNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTI 267 (499)
Q Consensus 189 ~~g~~~~A~~~~~~m~~~~~p~~~~~~~la~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~ 267 (499)
..+.+++|...|.+... ..| ....+..+...|-..|.++.|+..+++..+..
T Consensus 264 e~~~~d~Avs~Y~rAl~------------------------lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~--- 316 (966)
T KOG4626|consen 264 EARIFDRAVSCYLRALN------------------------LRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQ--- 316 (966)
T ss_pred HHhcchHHHHHHHHHHh------------------------cCCcchhhccceEEEEeccccHHHHHHHHHHHHhcC---
Confidence 77777777777766543 233 45677888888999999999999999999875
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHH
Q 036198 268 SSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNC 347 (499)
Q Consensus 268 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ 347 (499)
+--...|+.|..++-..|+..+|.+.|+...... +-.....+.|...|...|.+++|..+|....+-... -...++.
T Consensus 317 -P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~-p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~-~aaa~nN 393 (966)
T KOG4626|consen 317 -PNFPDAYNNLANALKDKGSVTEAVDCYNKALRLC-PNHADAMNNLGNIYREQGKIEEATRLYLKALEVFPE-FAAAHNN 393 (966)
T ss_pred -CCchHHHhHHHHHHHhccchHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhccchHHHHHHHHHHhhChh-hhhhhhh
Confidence 2336799999999999999999999999998763 334667888999999999999999999998775322 4567899
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCcC-hhhHHHHHHHHHhcCCchHHHHHHHHHhHCCCCCC-HHHHHHHHHHHHhC
Q 036198 348 FLKVLCDNKNGDEALRLYGRMIEVGCWPS-VQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQD-VDTYCVMIDGLFDC 425 (499)
Q Consensus 348 li~~~~~~g~~~~a~~~~~~m~~~~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~li~~~~~~ 425 (499)
|...|-++|++++|...|++... +.|+ ...|+.+-..|-..|+.+.|.+.+.+.... .|. ...++.|...|-.+
T Consensus 394 La~i~kqqgnl~~Ai~~Ykealr--I~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~--nPt~AeAhsNLasi~kDs 469 (966)
T KOG4626|consen 394 LASIYKQQGNLDDAIMCYKEALR--IKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQI--NPTFAEAHSNLASIYKDS 469 (966)
T ss_pred HHHHHHhcccHHHHHHHHHHHHh--cCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhc--CcHHHHHHhhHHHHhhcc
Confidence 99999999999999999999987 5677 568999999999999999999999998875 443 45788899999999
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 036198 426 SKVEEACFLLEEVVNKGLKLPYRKFDSYLMQL 457 (499)
Q Consensus 426 g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~ 457 (499)
|++.+|.+-+++.++.... .+..|..++.+.
T Consensus 470 Gni~~AI~sY~~aLklkPD-fpdA~cNllh~l 500 (966)
T KOG4626|consen 470 GNIPEAIQSYRTALKLKPD-FPDAYCNLLHCL 500 (966)
T ss_pred CCcHHHHHHHHHHHccCCC-CchhhhHHHHHH
Confidence 9999999999999876533 234454454443
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.8e-11 Score=127.99 Aligned_cols=367 Identities=11% Similarity=0.056 Sum_probs=262.2
Q ss_pred CCCCCHHHHHHHHHc--cCCChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHHHcCCCcc
Q 036198 76 GVPLTTDSVVGVLQR--FQFEEKIAFRFFMWAGHQDNYAHEPLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFV 153 (499)
Q Consensus 76 ~~~~~~~~~~~~l~~--~~~~~~~a~~~f~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~ 153 (499)
..++++..+...+.- -......|...+...... -..+...+..+...+. +.|++++|.++|++..+..
T Consensus 10 ~~~~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~--~~~~a~~~~~lA~~~~----~~g~~~~A~~~~~~al~~~---- 79 (765)
T PRK10049 10 KSALSNNQIADWLQIALWAGQDAEVITVYNRYRVH--MQLPARGYAAVAVAYR----NLKQWQNSLTLWQKALSLE---- 79 (765)
T ss_pred ccCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHH----HcCCHHHHHHHHHHHHHhC----
Confidence 345677766655533 466778899888877531 1235666888888888 8999999999999988765
Q ss_pred cHHHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHhhcCCCCChhhHHHH------------HHHH
Q 036198 154 PVDVLLMILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNIL------------GMQT 221 (499)
Q Consensus 154 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~~~~~l------------a~~~ 221 (499)
+.+...+..+...+...|++++|...+++..+..+.+.. +..+ |...
T Consensus 80 --------------------P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~ 138 (765)
T PRK10049 80 --------------------PQNDDYQRGLILTLADAGQYDEALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRA 138 (765)
T ss_pred --------------------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHH
Confidence 345677888999999999999999999999876555655 5555 7777
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCCCCH------HHHHHHHHHHHH-----cCCH--
Q 036198 222 LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTA------KTYAIMIVALVQ-----NDRM-- 288 (499)
Q Consensus 222 ~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~p~~------~~~~~ll~~~~~-----~~~~-- 288 (499)
+++..+.... +...+..+..++...|..+.|++.++..... |+. .....+++.... .+++
T Consensus 139 l~~al~~~P~-~~~~~~~la~~l~~~~~~e~Al~~l~~~~~~------p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ 211 (765)
T PRK10049 139 MTQALPRAPQ-TQQYPTEYVQALRNNRLSAPALGAIDDANLT------PAEKRDLEADAAAELVRLSFMPTRSEKERYAI 211 (765)
T ss_pred HHHHHHhCCC-CHHHHHHHHHHHHHCCChHHHHHHHHhCCCC------HHHHHHHHHHHHHHHHHhhcccccChhHHHHH
Confidence 7777775443 5556666777777888888888888755431 221 112222222221 1223
Q ss_pred -HHHHHHHHHHHHc-CCCcCHH-hHH----HHHHHHHhcCCHHHHHHHHHHHHhCCCC-CCHhhHHHHHHHHHHcCCHHH
Q 036198 289 -EECFSLLGHMINS-GCLPDVS-TYK----EVLEGMCLAGKVEEAYKFLEEMGNKGYP-PDIVTYNCFLKVLCDNKNGDE 360 (499)
Q Consensus 289 -~~a~~~~~~m~~~-~~~~~~~-~~~----~ll~~~~~~g~~~~a~~~~~~m~~~~~~-p~~~~~~~li~~~~~~g~~~~ 360 (499)
++|++.++.+.+. ...|+.. .+. ..+.++...|++++|...|+.+.+.+.. |+. ....+..+|...|++++
T Consensus 212 ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~ 290 (765)
T PRK10049 212 ADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEK 290 (765)
T ss_pred HHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHH
Confidence 6788888888754 2223221 111 1134556779999999999999887632 332 22225678999999999
Q ss_pred HHHHHHHHHHCCCCc---ChhhHHHHHHHHHhcCCchHHHHHHHHHhHCC-----------CCCC---HHHHHHHHHHHH
Q 036198 361 ALRLYGRMIEVGCWP---SVQTYNMLISMYFELGEPDGAFETWHEMDKRG-----------CAQD---VDTYCVMIDGLF 423 (499)
Q Consensus 361 a~~~~~~m~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~-----------~~p~---~~~~~~li~~~~ 423 (499)
|...|+++.+..... .......+..++...|++++|.+.++.+.+.. -.|+ ...+..+...+.
T Consensus 291 A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~ 370 (765)
T PRK10049 291 AQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAK 370 (765)
T ss_pred HHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHH
Confidence 999999987653211 13456677778899999999999999988752 1133 234566777888
Q ss_pred hCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcChhHH
Q 036198 424 DCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHMRKFYNPVIA 482 (499)
Q Consensus 424 ~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~ 482 (499)
..|+.++|.++++++.... +-+...+..+...+...|+.++|++.+++..+..|....
T Consensus 371 ~~g~~~eA~~~l~~al~~~-P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~ 428 (765)
T PRK10049 371 YSNDLPQAEMRARELAYNA-PGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNIN 428 (765)
T ss_pred HcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChH
Confidence 9999999999999998875 346788889999999999999999999999998877644
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.9e-11 Score=125.67 Aligned_cols=379 Identities=8% Similarity=-0.009 Sum_probs=240.4
Q ss_pred CChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHHh----
Q 036198 93 FEEKIAFRFFMWAGHQDNYAHEPLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLMILKQYTEK---- 168 (499)
Q Consensus 93 ~~~~~a~~~f~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~l~~~~~~---- 168 (499)
+....|+..++... .+. .......-.+...+. ..|++++|.++|+++.+.. +.+...+..+...+.+.
T Consensus 82 G~~~~A~~~~eka~-~p~-n~~~~~llalA~ly~----~~gdyd~Aiely~kaL~~d--P~n~~~l~gLa~~y~~~~q~~ 153 (822)
T PRK14574 82 GRDQEVIDVYERYQ-SSM-NISSRGLASAARAYR----NEKRWDQALALWQSSLKKD--PTNPDLISGMIMTQADAGRGG 153 (822)
T ss_pred CCcHHHHHHHHHhc-cCC-CCCHHHHHHHHHHHH----HcCCHHHHHHHHHHHHhhC--CCCHHHHHHHHHHHhhcCCHH
Confidence 33445666666553 111 111222222233455 5677777777777777766 33333333333322222
Q ss_pred -------hhcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHhhcCCCCChhhHHHH---------HHHHHHHHHHcC--C
Q 036198 169 -------IKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNIL---------GMQTLEEMIQMG--H 230 (499)
Q Consensus 169 -------~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~~~~~l---------a~~~~~~m~~~g--~ 230 (499)
......|+...+..++..+...++..+|++.++++.+..|.+...+..+ +...++.+.+.- +
T Consensus 154 eAl~~l~~l~~~dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f 233 (822)
T PRK14574 154 VVLKQATELAERDPTVQNYMTLSYLNRATDRNYDALQASSEAVRLAPTSEEVLKNHLEILQRNRIVEPALRLAKENPNLV 233 (822)
T ss_pred HHHHHHHHhcccCcchHHHHHHHHHHHhcchHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCcccc
Confidence 1122345544454444444445555557777777776544444443322 111112222110 1
Q ss_pred CCCHHH------HHHHHHHH-----HhcCC---HhHHHHHHHHHHHcCCCCCCCCH----HHHHHHHHHHHHcCCHHHHH
Q 036198 231 APDNFT------YNTAIDTF-----CKARM---VTEAADLFEFMRTKGSTISSPTA----KTYAIMIVALVQNDRMEECF 292 (499)
Q Consensus 231 ~p~~~~------~~~li~~~-----~~~g~---~~~a~~~~~~m~~~~~~~~~p~~----~~~~~ll~~~~~~~~~~~a~ 292 (499)
.+...- ....++.- ....+ .+.|+.-++.+...-.. .++.. .+..-.+.++...+++.++.
T Consensus 234 ~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~-~p~~~~~~~~~~~Drl~aL~~r~r~~~vi 312 (822)
T PRK14574 234 SAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWGK-DPEAQADYQRARIDRLGALLVRHQTADLI 312 (822)
T ss_pred CHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhccC-CCccchHHHHHHHHHHHHHHHhhhHHHHH
Confidence 111100 01111110 01112 34456666666553211 12222 22334566788899999999
Q ss_pred HHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCC-----CCCCHhhHHHHHHHHHHcCCHHHHHHHHHH
Q 036198 293 SLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKG-----YPPDIVTYNCFLKVLCDNKNGDEALRLYGR 367 (499)
Q Consensus 293 ~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~-----~~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 367 (499)
+.|+.|...+.+....+-..+.++|...+++++|..+++.+.... ..++......|.-++...+++++|..+++.
T Consensus 313 ~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~ 392 (822)
T PRK14574 313 KEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVN 392 (822)
T ss_pred HHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHH
Confidence 999999999877777889999999999999999999999986653 223444467899999999999999999999
Q ss_pred HHHCCC-----------CcC--h-hhHHHHHHHHHhcCCchHHHHHHHHHhHCCCCCCHHHHHHHHHHHHhCCCHHHHHH
Q 036198 368 MIEVGC-----------WPS--V-QTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACF 433 (499)
Q Consensus 368 m~~~~~-----------~~~--~-~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~ 433 (499)
+.+... .|+ - ..+..++..+...|++.+|++.++.+... -+-|......+...+...|.+.+|.+
T Consensus 393 ~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~-aP~n~~l~~~~A~v~~~Rg~p~~A~~ 471 (822)
T PRK14574 393 YSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSST-APANQNLRIALASIYLARDLPRKAEQ 471 (822)
T ss_pred HHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHhcCCHHHHHH
Confidence 987321 122 1 23455677788999999999999999776 34488888999999999999999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcChhHH
Q 036198 434 LLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHMRKFYNPVIA 482 (499)
Q Consensus 434 ~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~ 482 (499)
.++...... +-+..+......++...|++++|..+.+.+.+.+|....
T Consensus 472 ~~k~a~~l~-P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~Pe~~~ 519 (822)
T PRK14574 472 ELKAVESLA-PRSLILERAQAETAMALQEWHQMELLTDDVISRSPEDIP 519 (822)
T ss_pred HHHHHhhhC-CccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhCCCchh
Confidence 998877664 335677778889999999999999999999998888764
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=7.6e-11 Score=123.82 Aligned_cols=239 Identities=11% Similarity=-0.021 Sum_probs=188.2
Q ss_pred CCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHhHH
Q 036198 232 PDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYK 311 (499)
Q Consensus 232 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~ 311 (499)
|+......+...+...|++++|...|+++... +|+...+..+...+.+.|++++|...+++..+.. +.+...+.
T Consensus 507 Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~-----~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~-P~~~~l~~ 580 (987)
T PRK09782 507 PDAWQHRAVAYQAYQVEDYATALAAWQKISLH-----DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG-LGDNALYW 580 (987)
T ss_pred CchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc-----CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CccHHHHH
Confidence 55444444555667899999999999998654 3445556777888899999999999999998874 33333344
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcChhhHHHHHHHHHhcC
Q 036198 312 EVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELG 391 (499)
Q Consensus 312 ~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~ 391 (499)
.+.......|++++|...+++..+.. |+...|..+..++.+.|++++|...+++..+.. +.+...++.+..++...|
T Consensus 581 ~La~~l~~~Gr~~eAl~~~~~AL~l~--P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~-Pd~~~a~~nLG~aL~~~G 657 (987)
T PRK09782 581 WLHAQRYIPGQPELALNDLTRSLNIA--PSANAYVARATIYRQRHNVPAAVSDLRAALELE-PNNSNYQAALGYALWDSG 657 (987)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHhC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCC
Confidence 44445556799999999999998764 578889999999999999999999999999864 234567788888999999
Q ss_pred CchHHHHHHHHHhHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 036198 392 EPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSD 471 (499)
Q Consensus 392 ~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~ 471 (499)
+.++|...++...+.. +-+...+..+..++...|++++|...+++..+.... +..+.-.......+..+++.+.+-++
T Consensus 658 ~~eeAi~~l~~AL~l~-P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~-~a~i~~~~g~~~~~~~~~~~a~~~~~ 735 (987)
T PRK09782 658 DIAQSREMLERAHKGL-PDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDN-QALITPLTPEQNQQRFNFRRLHEEVG 735 (987)
T ss_pred CHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-CchhhhhhhHHHHHHHHHHHHHHHHH
Confidence 9999999999998763 236678889999999999999999999999877532 33455566667777888888888888
Q ss_pred HHHhhcChhH
Q 036198 472 HMRKFYNPVI 481 (499)
Q Consensus 472 ~m~~~~~~~~ 481 (499)
+.....+..+
T Consensus 736 r~~~~~~~~~ 745 (987)
T PRK09782 736 RRWTFSFDSS 745 (987)
T ss_pred HHhhcCccch
Confidence 8877666544
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=4.7e-11 Score=115.10 Aligned_cols=283 Identities=8% Similarity=0.030 Sum_probs=215.4
Q ss_pred hhhHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHHhhhcCCCCCHH-HHHHHHHHHHhCCChHHHHHHHHHhhcCCCCC
Q 036198 132 AKQFRLVCSMLDYMKRNNKVFVPVDVLLMILKQYTEKIKVKTQPEIN-ALNLLLDALCKCGLVDYAETICKRVKNKVKPN 210 (499)
Q Consensus 132 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~ 210 (499)
.|+++.|.+.+....+.. ++.. .|-....+..+.|+++.|.+.|.++.+
T Consensus 97 eGd~~~A~k~l~~~~~~~-------------------------~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~----- 146 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHA-------------------------EQPVVNYLLAAEAAQQRGDEARANQHLERAAE----- 146 (398)
T ss_pred CCCHHHHHHHHHHHHhcc-------------------------cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHh-----
Confidence 588998887777654432 2222 343445555889999999999998865
Q ss_pred hhhHHHHHHHHHHHHHHcCCCCCHHHHH--HHHHHHHhcCCHhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCH
Q 036198 211 ANTYNILGMQTLEEMIQMGHAPDNFTYN--TAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRM 288 (499)
Q Consensus 211 ~~~~~~la~~~~~~m~~~g~~p~~~~~~--~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~ 288 (499)
..|+..... .....+...|+++.|.+.++++.+.. +-+......+...|.+.|++
T Consensus 147 -------------------~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~----P~~~~al~ll~~~~~~~gdw 203 (398)
T PRK10747 147 -------------------LADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVA----PRHPEVLRLAEQAYIRTGAW 203 (398)
T ss_pred -------------------cCCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC----CCCHHHHHHHHHHHHHHHhH
Confidence 234443332 33678889999999999999999876 44678889999999999999
Q ss_pred HHHHHHHHHHHHcCCCcCH-------HhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHH
Q 036198 289 EECFSLLGHMINSGCLPDV-------STYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEA 361 (499)
Q Consensus 289 ~~a~~~~~~m~~~~~~~~~-------~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a 361 (499)
++|..++..+.+.+..++. .+|..++.......+.+...++++.+.+. .+.++.....+..++...|+.++|
T Consensus 204 ~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A 282 (398)
T PRK10747 204 SSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRK-TRHQVALQVAMAEHLIECDDHDTA 282 (398)
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHH
Confidence 9999999999988654332 13334444444555667777777776443 244778888999999999999999
Q ss_pred HHHHHHHHHCCCCcChhhHHHHHHHHHhcCCchHHHHHHHHHhHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHC
Q 036198 362 LRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNK 441 (499)
Q Consensus 362 ~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 441 (499)
.+++++..+. .|+... .++.+.+..++.+++.+..+...+.. +-|...+..+...|.+.+++++|.+.|+.+.+.
T Consensus 283 ~~~L~~~l~~--~~~~~l--~~l~~~l~~~~~~~al~~~e~~lk~~-P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~ 357 (398)
T PRK10747 283 QQIILDGLKR--QYDERL--VLLIPRLKTNNPEQLEKVLRQQIKQH-GDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQ 357 (398)
T ss_pred HHHHHHHHhc--CCCHHH--HHHHhhccCCChHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 9999998874 345422 23445556699999999999988762 235566778889999999999999999999986
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 036198 442 GLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHMRK 475 (499)
Q Consensus 442 ~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~ 475 (499)
.|+..++..+..++.+.|+.++|.+++++-..
T Consensus 358 --~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 358 --RPDAYDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred --CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 48999999999999999999999999987644
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=4e-10 Score=116.09 Aligned_cols=173 Identities=10% Similarity=-0.009 Sum_probs=139.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCC-----CCcChhhHHHHHHHH
Q 036198 313 VLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVG-----CWPSVQTYNMLISMY 387 (499)
Q Consensus 313 ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~-----~~~~~~~~~~li~~~ 387 (499)
.+-++...|+..++.+.++.+...+.+.-..+-..+.++|...+++++|..+|+.+.... ..++......|..+|
T Consensus 298 rl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ 377 (822)
T PRK14574 298 RLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSL 377 (822)
T ss_pred HHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHH
Confidence 456778889999999999999988866556688899999999999999999999987643 123344467899999
Q ss_pred HhcCCchHHHHHHHHHhHCCC-----------CCCH--H-HHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 036198 388 FELGEPDGAFETWHEMDKRGC-----------AQDV--D-TYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSY 453 (499)
Q Consensus 388 ~~~~~~~~a~~~~~~m~~~~~-----------~p~~--~-~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l 453 (499)
...+++++|..+++.+.+... .||. . .+..++..+.-.|+..+|.+.++++.... +-|......+
T Consensus 378 ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~a-P~n~~l~~~~ 456 (822)
T PRK14574 378 NESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTA-PANQNLRIAL 456 (822)
T ss_pred HhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence 999999999999999987311 1222 2 34456777888999999999999998776 4588899999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhhcChhHHHHHH
Q 036198 454 LMQLSVIGDLGAIHKLSDHMRKFYNPVIARRLA 486 (499)
Q Consensus 454 l~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~ 486 (499)
.+.+...|.+.+|++.++......|....-+++
T Consensus 457 A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~ 489 (822)
T PRK14574 457 ASIYLARDLPRKAEQELKAVESLAPRSLILERA 489 (822)
T ss_pred HHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHH
Confidence 999999999999999998888776665554443
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.56 E-value=3.9e-11 Score=116.33 Aligned_cols=300 Identities=10% Similarity=-0.012 Sum_probs=216.6
Q ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHHhhhcCCCCC-HHHHHHHHHHHHhCCChHH
Q 036198 117 AYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLMILKQYTEKIKVKTQPE-INALNLLLDALCKCGLVDY 195 (499)
Q Consensus 117 ~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~ 195 (499)
.+..+..++... ..|+++.|.+.+.+..+.. |+ ...+-....++...|+.+.
T Consensus 84 ~~~~~~~glla~--~~g~~~~A~~~l~~~~~~~-------------------------~~~~~~~llaA~aa~~~g~~~~ 136 (409)
T TIGR00540 84 AQKQTEEALLKL--AEGDYAKAEKLIAKNADHA-------------------------AEPVLNLIKAAEAAQQRGDEAR 136 (409)
T ss_pred HHHHHHHHHHHH--hCCCHHHHHHHHHHHhhcC-------------------------CCCHHHHHHHHHHHHHCCCHHH
Confidence 345555555422 5799999999998766543 44 3345556677888999999
Q ss_pred HHHHHHHhhcCCCCChhhHHHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCCCCHH
Q 036198 196 AETICKRVKNKVKPNANTYNILGMQTLEEMIQMGHAPDN--FTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAK 273 (499)
Q Consensus 196 A~~~~~~m~~~~~p~~~~~~~la~~~~~~m~~~g~~p~~--~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~p~~~ 273 (499)
|.+.+.+..+. .|+. ...-.....+...|+++.|.+.++.+.+.. +-+..
T Consensus 137 A~~~l~~a~~~------------------------~p~~~l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~----P~~~~ 188 (409)
T TIGR00540 137 ANQHLEEAAEL------------------------AGNDNILVEIARTRILLAQNELHAARHGVDKLLEMA----PRHKE 188 (409)
T ss_pred HHHHHHHHHHh------------------------CCcCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC----CCCHH
Confidence 99999887542 2333 233445788889999999999999999986 34667
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHH---HhcCCHHHHHHHHHHHHhCCC---CCCHhhHHH
Q 036198 274 TYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGM---CLAGKVEEAYKFLEEMGNKGY---PPDIVTYNC 347 (499)
Q Consensus 274 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~---~~~g~~~~a~~~~~~m~~~~~---~p~~~~~~~ 347 (499)
+...+...+...|++++|.+.+..+.+.+..+.......-..++ ...+..+++.+.+..+.+... +.+...+..
T Consensus 189 ~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~ 268 (409)
T TIGR00540 189 VLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIA 268 (409)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHH
Confidence 88999999999999999999999999987543332212222222 333333333445555544321 137788899
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCcChhh---HHHHHHHHHhcCCchHHHHHHHHHhHCCCCCCH---HHHHHHHHH
Q 036198 348 FLKVLCDNKNGDEALRLYGRMIEVGCWPSVQT---YNMLISMYFELGEPDGAFETWHEMDKRGCAQDV---DTYCVMIDG 421 (499)
Q Consensus 348 li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~---~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~---~~~~~li~~ 421 (499)
+...+...|+.++|.+++++..+.. ||... ...........++.+.+.+.++...+. .|+. .....+...
T Consensus 269 ~a~~l~~~g~~~~A~~~l~~~l~~~--pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~--~p~~~~~~ll~sLg~l 344 (409)
T TIGR00540 269 LAEHLIDCDDHDSAQEIIFDGLKKL--GDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKN--VDDKPKCCINRALGQL 344 (409)
T ss_pred HHHHHHHCCChHHHHHHHHHHHhhC--CCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHh--CCCChhHHHHHHHHHH
Confidence 9999999999999999999999854 44432 122222233457788888888877765 3433 456688899
Q ss_pred HHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 036198 422 LFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHMRK 475 (499)
Q Consensus 422 ~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~ 475 (499)
+.+.|++++|.+.|+........|+...+..+...+.+.|+.++|.+++++-..
T Consensus 345 ~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 345 LMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred HHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 999999999999999655545568999999999999999999999999997544
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.54 E-value=4.2e-14 Score=130.14 Aligned_cols=261 Identities=20% Similarity=0.212 Sum_probs=113.2
Q ss_pred HHHHHHHhCCChHHHHHHHHHhhcCC-CCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHH
Q 036198 182 LLLDALCKCGLVDYAETICKRVKNKV-KPNANTYNILGMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFM 260 (499)
Q Consensus 182 ~li~~~~~~g~~~~A~~~~~~m~~~~-~p~~~~~~~la~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m 260 (499)
.+...+.+.|++++|+++++...... +| .|...|..+...+...++++.|.+.++++
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~----------------------~~~~~~~~~a~La~~~~~~~~A~~ay~~l 70 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPP----------------------DDPEYWRLLADLAWSLGDYDEAIEAYEKL 70 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccc----------------------ccccccccccccccccccccccccccccc
Confidence 55778889999999999996543321 11 14455666677777889999999999999
Q ss_pred HHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CC
Q 036198 261 RTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKG-YP 339 (499)
Q Consensus 261 ~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~-~~ 339 (499)
...+ +-+...+..++.. ...+++++|.+++....+. .++...+..++..+.+.++++++.++++.+.... .+
T Consensus 71 ~~~~----~~~~~~~~~l~~l-~~~~~~~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~ 143 (280)
T PF13429_consen 71 LASD----KANPQDYERLIQL-LQDGDPEEALKLAEKAYER--DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAP 143 (280)
T ss_dssp ------------------------------------------------------H-HHHTT-HHHHHHHHHHHHH-T---
T ss_pred cccc----ccccccccccccc-ccccccccccccccccccc--ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCC
Confidence 9876 2356667777777 7999999999999887665 3567778889999999999999999999977543 34
Q ss_pred CCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCc-ChhhHHHHHHHHHhcCCchHHHHHHHHHhHCCCCCCHHHHHHH
Q 036198 340 PDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWP-SVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVM 418 (499)
Q Consensus 340 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l 418 (499)
.+...|..+...+.+.|+.++|.+.+++..+.. | |....+.++..+...|+.+++.++++...+.. +.|...+..+
T Consensus 144 ~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~--P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~l 220 (280)
T PF13429_consen 144 DSARFWLALAEIYEQLGDPDKALRDYRKALELD--PDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDAL 220 (280)
T ss_dssp T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH---TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHH
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHH
Confidence 577888889999999999999999999999864 5 47788899999999999999999998887653 3455677889
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 036198 419 IDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHMRK 475 (499)
Q Consensus 419 i~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~ 475 (499)
..+|...|+.++|..++++..+.. +.|+.....+..++...|+.++|.++..+..+
T Consensus 221 a~~~~~lg~~~~Al~~~~~~~~~~-p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 221 AAAYLQLGRYEEALEYLEKALKLN-PDDPLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp HHHHHHHT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHT-----------------
T ss_pred HHHhcccccccccccccccccccc-cccccccccccccccccccccccccccccccc
Confidence 999999999999999999998865 34888899999999999999999999887654
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.2e-10 Score=101.53 Aligned_cols=304 Identities=14% Similarity=0.133 Sum_probs=228.8
Q ss_pred HHHHHHHHHHhcchhhhhhHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhCCChHH
Q 036198 116 LAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLMILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDY 195 (499)
Q Consensus 116 ~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 195 (499)
..|-.=++.+. .++.++|..+|-+|.+.. +-+..+.-+|.+.|-+.|..|.
T Consensus 37 r~Yv~GlNfLL-----s~Q~dKAvdlF~e~l~~d------------------------~~t~e~~ltLGnLfRsRGEvDR 87 (389)
T COG2956 37 RDYVKGLNFLL-----SNQPDKAVDLFLEMLQED------------------------PETFEAHLTLGNLFRSRGEVDR 87 (389)
T ss_pred HHHHhHHHHHh-----hcCcchHHHHHHHHHhcC------------------------chhhHHHHHHHHHHHhcchHHH
Confidence 44666666665 578899999999998865 2355678899999999999999
Q ss_pred HHHHHHHhhcCCCCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCCCCHHHH
Q 036198 196 AETICKRVKNKVKPNANTYNILGMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTY 275 (499)
Q Consensus 196 A~~~~~~m~~~~~p~~~~~~~la~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~p~~~~~ 275 (499)
|+.+...+.++ ||.. ++ --......|..-|..+|-+|.|+++|..+.+.+ ..-..+.
T Consensus 88 AIRiHQ~L~~s--pdlT-~~----------------qr~lAl~qL~~Dym~aGl~DRAE~~f~~L~de~----efa~~Al 144 (389)
T COG2956 88 AIRIHQTLLES--PDLT-FE----------------QRLLALQQLGRDYMAAGLLDRAEDIFNQLVDEG----EFAEGAL 144 (389)
T ss_pred HHHHHHHHhcC--CCCc-hH----------------HHHHHHHHHHHHHHHhhhhhHHHHHHHHHhcch----hhhHHHH
Confidence 99999888763 1110 00 012234566777889999999999999998876 3446678
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCH----HhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHH
Q 036198 276 AIMIVALVQNDRMEECFSLLGHMINSGCLPDV----STYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKV 351 (499)
Q Consensus 276 ~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~----~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~ 351 (499)
..|+..|-...+|++|.++-+++.+.+-.+.. ..|.-+...+....+.+.|..++.+..+.+.+ ++..--.+...
T Consensus 145 qqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~-cvRAsi~lG~v 223 (389)
T COG2956 145 QQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQADKK-CVRASIILGRV 223 (389)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCcc-ceehhhhhhHH
Confidence 89999999999999999999999987644433 23555666667788999999999998887543 34444456678
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCcChhhHHHHHHHHHhcCCchHHHHHHHHHhHCCCCCCHHHHHHHHHHHHhCCCHHHH
Q 036198 352 LCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEA 431 (499)
Q Consensus 352 ~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a 431 (499)
....|+++.|.+.++...+.+..--..+...|..+|...|+.++...++..+.+.. ++...-..+-.......-.+.|
T Consensus 224 ~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~--~g~~~~l~l~~lie~~~G~~~A 301 (389)
T COG2956 224 ELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETN--TGADAELMLADLIELQEGIDAA 301 (389)
T ss_pred HHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcc--CCccHHHHHHHHHHHhhChHHH
Confidence 88999999999999999998755556788999999999999999999999988763 3444445555555555566777
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHhh
Q 036198 432 CFLLEEVVNKGLKLPYRKFDSYLMQLSVI---GDLGAIHKLSDHMRKF 476 (499)
Q Consensus 432 ~~~~~~m~~~~~~p~~~~~~~ll~~~~~~---g~~~~a~~~~~~m~~~ 476 (499)
...+.+-+.. +|+...+..++..-... |...+....+.+|...
T Consensus 302 q~~l~~Ql~r--~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvge 347 (389)
T COG2956 302 QAYLTRQLRR--KPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVGE 347 (389)
T ss_pred HHHHHHHHhh--CCcHHHHHHHHHhhhccccccchhhhHHHHHHHHHH
Confidence 7777666655 48999999999876543 4566666666666643
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=8.7e-10 Score=106.34 Aligned_cols=290 Identities=10% Similarity=0.022 Sum_probs=216.9
Q ss_pred HHHHccCCChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHH-hcchhhhhhHHHHHHHHHHHHHcCCCcccHHHHHHHHHH
Q 036198 86 GVLQRFQFEEKIAFRFFMWAGHQDNYAHEPLAYNLMIDIL-SSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLMILKQ 164 (499)
Q Consensus 86 ~~l~~~~~~~~~a~~~f~~~~~~~~~~~~~~~~~~li~~~-~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~l~~ 164 (499)
.++.-...+++.|.+........ .+++..+-.+..-. . +.|+++.|...+.++.+..
T Consensus 91 gl~a~~eGd~~~A~k~l~~~~~~---~~~p~l~~llaA~aA~----~~g~~~~A~~~l~~A~~~~--------------- 148 (398)
T PRK10747 91 ALLKLAEGDYQQVEKLMTRNADH---AEQPVVNYLLAAEAAQ----QRGDEARANQHLERAAELA--------------- 148 (398)
T ss_pred HHHHHhCCCHHHHHHHHHHHHhc---ccchHHHHHHHHHHHH----HCCCHHHHHHHHHHHHhcC---------------
Confidence 34444456677777666643322 22344443333333 4 8999999999999998754
Q ss_pred HHHhhhcCCCCCHHHHH--HHHHHHHhCCChHHHHHHHHHhhcCCCCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 036198 165 YTEKIKVKTQPEINALN--LLLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQTLEEMIQMGHAPDNFTYNTAID 242 (499)
Q Consensus 165 ~~~~~~~~~~~~~~~~~--~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~~~~~la~~~~~~m~~~g~~p~~~~~~~li~ 242 (499)
|+...+. .....+...|+++.|...++++.+. -+-+......+..
T Consensus 149 ----------~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~-----------------------~P~~~~al~ll~~ 195 (398)
T PRK10747 149 ----------DNDQLPVEITRVRIQLARNENHAARHGVDKLLEV-----------------------APRHPEVLRLAEQ 195 (398)
T ss_pred ----------CcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-----------------------CCCCHHHHHHHHH
Confidence 5543332 4467889999999999999988753 1226678888999
Q ss_pred HHHhcCCHhHHHHHHHHHHHcCCCCCCCCH------HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHH
Q 036198 243 TFCKARMVTEAADLFEFMRTKGSTISSPTA------KTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEG 316 (499)
Q Consensus 243 ~~~~~g~~~~a~~~~~~m~~~~~~~~~p~~------~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~ 316 (499)
.|.+.|++++|.+++..+.+... ..+.. .+|..++.......+.+...++++.+.+. .+.++.....+..+
T Consensus 196 ~~~~~gdw~~a~~~l~~l~k~~~--~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~-~~~~~~~~~~~A~~ 272 (398)
T PRK10747 196 AYIRTGAWSSLLDILPSMAKAHV--GDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRK-TRHQVALQVAMAEH 272 (398)
T ss_pred HHHHHHhHHHHHHHHHHHHHcCC--CCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHH-HhCCHHHHHHHHHH
Confidence 99999999999999999999873 11221 23444455555566677777888777543 35578888899999
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcChhhHHHHHHHHHhcCCchHH
Q 036198 317 MCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGA 396 (499)
Q Consensus 317 ~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a 396 (499)
+...|+.++|.+++++..+. .|+.. -.++.+....++.+++.+..+...+.. +-|...+..+...|.+.+++++|
T Consensus 273 l~~~g~~~~A~~~L~~~l~~--~~~~~--l~~l~~~l~~~~~~~al~~~e~~lk~~-P~~~~l~l~lgrl~~~~~~~~~A 347 (398)
T PRK10747 273 LIECDDHDTAQQIILDGLKR--QYDER--LVLLIPRLKTNNPEQLEKVLRQQIKQH-GDTPLLWSTLGQLLMKHGEWQEA 347 (398)
T ss_pred HHHCCCHHHHHHHHHHHHhc--CCCHH--HHHHHhhccCCChHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHH
Confidence 99999999999999998875 34442 223445556699999999999988754 24556788999999999999999
Q ss_pred HHHHHHHhHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 036198 397 FETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVN 440 (499)
Q Consensus 397 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 440 (499)
.+.|+...+. .|+...+..+...+.+.|+.++|.+++++-..
T Consensus 348 ~~~le~al~~--~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 348 SLAFRAALKQ--RPDAYDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred HHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 9999999885 69999999999999999999999999998754
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.46 E-value=4.5e-11 Score=113.97 Aligned_cols=271 Identities=11% Similarity=-0.011 Sum_probs=129.7
Q ss_pred CHHHHHHHHHHHHhCCChHHHHHHHHHhhcCCCCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHH
Q 036198 176 EINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAAD 255 (499)
Q Consensus 176 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~~~~~la~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~ 255 (499)
+..+..-+..+|...+++++|+++|+.+.+..+- ..-+.+.|.+.+--+-+ +-++.
T Consensus 352 t~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~--------------------rv~~meiyST~LWHLq~----~v~Ls 407 (638)
T KOG1126|consen 352 TGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPY--------------------RVKGMEIYSTTLWHLQD----EVALS 407 (638)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc--------------------cccchhHHHHHHHHHHh----hHHHH
Confidence 3457788899999999999999999999763110 01133444444333321 11111
Q ss_pred HH-HHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 036198 256 LF-EFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMG 334 (499)
Q Consensus 256 ~~-~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~ 334 (499)
.+ +.+.+.. +-...+|.++..+|.-.++.+.|++.|++..+.. +-...+|+.+-+-+.....+|.|...|+...
T Consensus 408 ~Laq~Li~~~----~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQld-p~faYayTLlGhE~~~~ee~d~a~~~fr~Al 482 (638)
T KOG1126|consen 408 YLAQDLIDTD----PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLD-PRFAYAYTLLGHESIATEEFDKAMKSFRKAL 482 (638)
T ss_pred HHHHHHHhhC----CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccC-CccchhhhhcCChhhhhHHHHhHHHHHHhhh
Confidence 11 1122221 2234455555555555555555555555554432 1144555555555555555555555555444
Q ss_pred hCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcChhhHHHHHHHHHhcCCchHHHHHHHHHhHCCCCCCHHH
Q 036198 335 NKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDT 414 (499)
Q Consensus 335 ~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~ 414 (499)
..... +-.+|--+...|.++++++.|+-.|+...+.+. -+.+....+...+-+.|+.|+|++++++......+ |+.+
T Consensus 483 ~~~~r-hYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP-~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~k-n~l~ 559 (638)
T KOG1126|consen 483 GVDPR-HYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINP-SNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPK-NPLC 559 (638)
T ss_pred cCCch-hhHHHHhhhhheeccchhhHHHHHHHhhhcCCc-cchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCC-Cchh
Confidence 32111 112222234445555555555555555554331 23334444444455555555555555554433211 2222
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCh
Q 036198 415 YCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHMRKFYNP 479 (499)
Q Consensus 415 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~ 479 (499)
--..+..+...++.++|+..++++++.- +-+...+..+...|.+.|+.+.|..-|.-+.+..|+
T Consensus 560 ~~~~~~il~~~~~~~eal~~LEeLk~~v-P~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpk 623 (638)
T KOG1126|consen 560 KYHRASILFSLGRYVEALQELEELKELV-PQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPK 623 (638)
T ss_pred HHHHHHHHHhhcchHHHHHHHHHHHHhC-cchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCc
Confidence 2233333444455555555555554432 123334444445555555555555555555554444
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.45 E-value=3.5e-09 Score=95.42 Aligned_cols=287 Identities=12% Similarity=0.062 Sum_probs=226.9
Q ss_pred hhhhHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHhhcCCCCC
Q 036198 131 KAKQFRLVCSMLDYMKRNNKVFVPVDVLLMILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPN 210 (499)
Q Consensus 131 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~ 210 (499)
-.|+|.+|+.+..+-.+.+ +.....|..-.++....|+.+.|-..+.+..+.
T Consensus 96 ~eG~~~qAEkl~~rnae~~------------------------e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~---- 147 (400)
T COG3071 96 FEGDFQQAEKLLRRNAEHG------------------------EQPVLAYLLAAEAAQQRGDEDRANRYLAEAAEL---- 147 (400)
T ss_pred hcCcHHHHHHHHHHhhhcC------------------------cchHHHHHHHHHHHHhcccHHHHHHHHHHHhcc----
Confidence 4699999999998876665 234557777888888999999999998887651
Q ss_pred hhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHH
Q 036198 211 ANTYNILGMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEE 290 (499)
Q Consensus 211 ~~~~~~la~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~ 290 (499)
--.++....-+..+.....|+++.|..-.+++.+.+ +-.........++|.+.|++..
T Consensus 148 ------------------~~~~~l~v~ltrarlll~~~d~~aA~~~v~~ll~~~----pr~~~vlrLa~r~y~~~g~~~~ 205 (400)
T COG3071 148 ------------------AGDDTLAVELTRARLLLNRRDYPAARENVDQLLEMT----PRHPEVLRLALRAYIRLGAWQA 205 (400)
T ss_pred ------------------CCCchHHHHHHHHHHHHhCCCchhHHHHHHHHHHhC----cCChHHHHHHHHHHHHhccHHH
Confidence 112355566677788899999999999999999886 4567889999999999999999
Q ss_pred HHHHHHHHHHcCCCcCH-------HhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHH
Q 036198 291 CFSLLGHMINSGCLPDV-------STYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALR 363 (499)
Q Consensus 291 a~~~~~~m~~~~~~~~~-------~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~ 363 (499)
...++..|.+.|.-.+. .+|..+++-....+..+.-...++...+. .+.++..-.+++.-+.+.|+.++|.+
T Consensus 206 ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~ 284 (400)
T COG3071 206 LLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQPRK-LRNDPELVVAYAERLIRLGDHDEAQE 284 (400)
T ss_pred HHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhccHH-hhcChhHHHHHHHHHHHcCChHHHHH
Confidence 99999999999876654 45677777777777777766677666443 34466677788888999999999999
Q ss_pred HHHHHHHCCCCcChhhHHHHHHHHHhcCCchHHHHHHHHHhHC-CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC
Q 036198 364 LYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKR-GCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKG 442 (499)
Q Consensus 364 ~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 442 (499)
+.++..+.+..|+ -...-.+.+-++.+.-.+..+.-.+. +. ++..+..|-..|.+.+.+.+|.+.|+...+.
T Consensus 285 ~i~~~Lk~~~D~~----L~~~~~~l~~~d~~~l~k~~e~~l~~h~~--~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~- 357 (400)
T COG3071 285 IIEDALKRQWDPR----LCRLIPRLRPGDPEPLIKAAEKWLKQHPE--DPLLLSTLGRLALKNKLWGKASEALEAALKL- 357 (400)
T ss_pred HHHHHHHhccChh----HHHHHhhcCCCCchHHHHHHHHHHHhCCC--ChhHHHHHHHHHHHhhHHHHHHHHHHHHHhc-
Confidence 9999998876665 22233456677777777777665443 33 4467889999999999999999999977766
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 036198 443 LKLPYRKFDSYLMQLSVIGDLGAIHKLSDHMRKF 476 (499)
Q Consensus 443 ~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~ 476 (499)
.|+..+|+-+..++.+.|+..+|.+..++-.-.
T Consensus 358 -~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~ 390 (400)
T COG3071 358 -RPSASDYAELADALDQLGEPEEAEQVRREALLL 390 (400)
T ss_pred -CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 489999999999999999999999998876643
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.44 E-value=9.7e-13 Score=121.09 Aligned_cols=263 Identities=16% Similarity=0.114 Sum_probs=110.5
Q ss_pred HHHHHHhcchhhhhhHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhCCChHHHHHH
Q 036198 120 LMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLMILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETI 199 (499)
Q Consensus 120 ~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 199 (499)
.+-..+. +.|++++|.++++.-..... .+.|...|..+...+...|+++.|.+.
T Consensus 13 ~~A~~~~----~~~~~~~Al~~L~~~~~~~~----------------------~~~~~~~~~~~a~La~~~~~~~~A~~a 66 (280)
T PF13429_consen 13 RLARLLY----QRGDYEKALEVLKKAAQKIA----------------------PPDDPEYWRLLADLAWSLGDYDEAIEA 66 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccc----cccccccccccccccccccc----------------------ccccccccccccccccccccccccccc
Confidence 3355555 89999999999965433320 013445666677777788999999999
Q ss_pred HHHhhcCCCCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCCCCHHHHHHHH
Q 036198 200 CKRVKNKVKPNANTYNILGMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMI 279 (499)
Q Consensus 200 ~~~m~~~~~p~~~~~~~la~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~p~~~~~~~ll 279 (499)
++++... +.. +...+..++.. ...+++++|.++++...+.. ++...+..++
T Consensus 67 y~~l~~~----------------------~~~-~~~~~~~l~~l-~~~~~~~~A~~~~~~~~~~~-----~~~~~l~~~l 117 (280)
T PF13429_consen 67 YEKLLAS----------------------DKA-NPQDYERLIQL-LQDGDPEEALKLAEKAYERD-----GDPRYLLSAL 117 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccc----------------------ccc-ccccccccccc-cccccccccccccccccccc-----cccchhhHHH
Confidence 9988652 111 44456666666 68899999999998776543 4566778888
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcC-CCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCH
Q 036198 280 VALVQNDRMEECFSLLGHMINSG-CLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNG 358 (499)
Q Consensus 280 ~~~~~~~~~~~a~~~~~~m~~~~-~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~ 358 (499)
..+.+.++++++..+++.+.... .+.+...|..+...+.+.|+.++|.+.+++..+.... |......++..+...|+.
T Consensus 118 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~-~~~~~~~l~~~li~~~~~ 196 (280)
T PF13429_consen 118 QLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALELDPD-DPDARNALAWLLIDMGDY 196 (280)
T ss_dssp H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT--HHHHHHHHHHHCTTCHH
T ss_pred HHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHCCCh
Confidence 89999999999999999987542 3457778888888999999999999999999887432 577888899999999999
Q ss_pred HHHHHHHHHHHHCCCCcChhhHHHHHHHHHhcCCchHHHHHHHHHhHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 036198 359 DEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEV 438 (499)
Q Consensus 359 ~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m 438 (499)
+++..+++...+.. ..|...+..+..+|...|+.++|...+++..+.. +.|......+..++...|+.++|.++..+.
T Consensus 197 ~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~-p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~ 274 (280)
T PF13429_consen 197 DEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN-PDDPLWLLAYADALEQAGRKDEALRLRRQA 274 (280)
T ss_dssp HHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHT---------------
T ss_pred HHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccccc-cccccccccccccccccccccccccccccc
Confidence 99999988887754 4566777889999999999999999999987742 337777888899999999999999988776
Q ss_pred HH
Q 036198 439 VN 440 (499)
Q Consensus 439 ~~ 440 (499)
..
T Consensus 275 ~~ 276 (280)
T PF13429_consen 275 LR 276 (280)
T ss_dssp --
T ss_pred cc
Confidence 43
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.4e-08 Score=93.09 Aligned_cols=303 Identities=13% Similarity=0.043 Sum_probs=206.0
Q ss_pred hhhcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHhhcCCCCChhhHHHH------------------------------
Q 036198 168 KIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNIL------------------------------ 217 (499)
Q Consensus 168 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~~~~~l------------------------------ 217 (499)
....+...|...+-...-.+-+.|..+.|+..|.......|-.-..|-.|
T Consensus 155 ~~~~~~~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~~e~~~~l~~~l~~~~h~M~~~F~~ 234 (559)
T KOG1155|consen 155 SKHCGGEKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITDIEILSILVVGLPSDMHWMKKFFLK 234 (559)
T ss_pred HHHhcccchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhchHHHHHHHHhcCcccchHHHHHHHH
Confidence 34455556655555555666778999999998888776555555555444
Q ss_pred -----------HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCCCCHHHHHHH--------
Q 036198 218 -----------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIM-------- 278 (499)
Q Consensus 218 -----------a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~p~~~~~~~l-------- 278 (499)
+.+-.+.....|++-+...-+....+.-...+++.|+.+|+++.+.++- ---|..+|..+
T Consensus 235 ~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPY-Rl~dmdlySN~LYv~~~~s 313 (559)
T KOG1155|consen 235 KAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPY-RLDDMDLYSNVLYVKNDKS 313 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCC-cchhHHHHhHHHHHHhhhH
Confidence 3333444445566655555555556666778899999999999887521 11134444333
Q ss_pred -----------------------HHHHHHcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 036198 279 -----------------------IVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGN 335 (499)
Q Consensus 279 -----------------------l~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~ 335 (499)
.+-|+-.++.++|...|++..+.+ +-....|+.+.+-|........|.+-++...+
T Consensus 314 kLs~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvd 392 (559)
T KOG1155|consen 314 KLSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAAIESYRRAVD 392 (559)
T ss_pred HHHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHHHHHHHHHHh
Confidence 334455566778888888887765 34556777777888888888888888888777
Q ss_pred CCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcChhhHHHHHHHHHhcCCchHHHHHHHHHhHCCCCCCHHHH
Q 036198 336 KGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTY 415 (499)
Q Consensus 336 ~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~ 415 (499)
-+. .|-..|-.|.++|.-.+...-|+-.|++..+.. +-|...|.+|..+|.+.++.++|++.|......|- .+...+
T Consensus 393 i~p-~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~d-te~~~l 469 (559)
T KOG1155|consen 393 INP-RDYRAWYGLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGD-TEGSAL 469 (559)
T ss_pred cCc-hhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccc-cchHHH
Confidence 643 377788888888888888888888888877753 24677888888888888888888888888776642 255778
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHH----CCCCCCHHHH---HHHHHHHHhcCCHHHHHHHHHHHHhh
Q 036198 416 CVMIDGLFDCSKVEEACFLLEEVVN----KGLKLPYRKF---DSYLMQLSVIGDLGAIHKLSDHMRKF 476 (499)
Q Consensus 416 ~~li~~~~~~g~~~~a~~~~~~m~~----~~~~p~~~~~---~~ll~~~~~~g~~~~a~~~~~~m~~~ 476 (499)
..+...|-+.++..+|.+.+.+-++ .|.. +..|. .-|..-+.+.+++++|..+.......
T Consensus 470 ~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~-~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~ 536 (559)
T KOG1155|consen 470 VRLAKLYEELKDLNEAAQYYEKYVEVSELEGEI-DDETIKARLFLAEYFKKMKDFDEASYYATLVLKG 536 (559)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHhhccc-chHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcC
Confidence 8888888888888888777766543 2332 22222 22345567778888777766666554
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.41 E-value=4.7e-09 Score=96.14 Aligned_cols=264 Identities=12% Similarity=0.094 Sum_probs=199.3
Q ss_pred hhcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHhhcCCC---CChhhHHHH--------HHHHHHHHHHcCCCCCHHHH
Q 036198 169 IKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNKVK---PNANTYNIL--------GMQTLEEMIQMGHAPDNFTY 237 (499)
Q Consensus 169 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~---p~~~~~~~l--------a~~~~~~m~~~g~~p~~~~~ 237 (499)
...|++-+...-+-...+.-...+++.|+.+|+++....| .|..+|.-+ .+.++.+-.-.-.+--+.|.
T Consensus 254 ~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~LA~~v~~idKyR~ETC 333 (559)
T KOG1155|consen 254 SSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYLAQNVSNIDKYRPETC 333 (559)
T ss_pred HhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHHHHHHHHhccCCccce
Confidence 3345555555445555555677899999999999987522 244555433 22222222222122345677
Q ss_pred HHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHH
Q 036198 238 NTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGM 317 (499)
Q Consensus 238 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~ 317 (499)
.++.+-|+-.++.++|...|++..+.+ +-....|+.+..-|....+...|.+-|+...+-+ +.|-..|-.|..+|
T Consensus 334 CiIaNYYSlr~eHEKAv~YFkRALkLN----p~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~-p~DyRAWYGLGQaY 408 (559)
T KOG1155|consen 334 CIIANYYSLRSEHEKAVMYFKRALKLN----PKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDIN-PRDYRAWYGLGQAY 408 (559)
T ss_pred eeehhHHHHHHhHHHHHHHHHHHHhcC----cchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcC-chhHHHHhhhhHHH
Confidence 788888999999999999999999976 4467899999999999999999999999999875 66888999999999
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcChhhHHHHHHHHHhcCCchHHH
Q 036198 318 CLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAF 397 (499)
Q Consensus 318 ~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~ 397 (499)
.-.+.+.=|+-.|++...-. +.|...|.+|..+|.+.++.++|.+.|......|- .+...+..|.+.|-+.++..+|.
T Consensus 409 eim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~d-te~~~l~~LakLye~l~d~~eAa 486 (559)
T KOG1155|consen 409 EIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGD-TEGSALVRLAKLYEELKDLNEAA 486 (559)
T ss_pred HHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccc-cchHHHHHHHHHHHHHHhHHHHH
Confidence 99999999999999988764 34899999999999999999999999999998763 36688999999999999999999
Q ss_pred HHHHHHhHC----CC-CCC-HHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 036198 398 ETWHEMDKR----GC-AQD-VDTYCVMIDGLFDCSKVEEACFLLEEVV 439 (499)
Q Consensus 398 ~~~~~m~~~----~~-~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~ 439 (499)
..|..-.+. |. .|. ..+---|..-+.+.+++++|........
T Consensus 487 ~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~ 534 (559)
T KOG1155|consen 487 QYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVL 534 (559)
T ss_pred HHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHh
Confidence 998876552 32 221 1222234455667788887776655443
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.39 E-value=6.9e-09 Score=90.81 Aligned_cols=311 Identities=14% Similarity=0.118 Sum_probs=224.2
Q ss_pred CCCHHHHHHHHHccCCChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHHHcCCCcccHHH
Q 036198 78 PLTTDSVVGVLQRFQFEEKIAFRFFMWAGHQDNYAHEPLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDV 157 (499)
Q Consensus 78 ~~~~~~~~~~l~~~~~~~~~a~~~f~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~ 157 (499)
.++.+-+..+=--+.+.+++|...|-.+.+.+. -+..+--+|-+.|- +.|..+.|+.+-+...++.. .+.+
T Consensus 34 ~lsr~Yv~GlNfLLs~Q~dKAvdlF~e~l~~d~--~t~e~~ltLGnLfR----sRGEvDRAIRiHQ~L~~spd--lT~~- 104 (389)
T COG2956 34 RLSRDYVKGLNFLLSNQPDKAVDLFLEMLQEDP--ETFEAHLTLGNLFR----SRGEVDRAIRIHQTLLESPD--LTFE- 104 (389)
T ss_pred hccHHHHhHHHHHhhcCcchHHHHHHHHHhcCc--hhhHHHHHHHHHHH----hcchHHHHHHHHHHHhcCCC--CchH-
Confidence 355555544444467788899999988865321 13334445566676 89999999999998876541 1111
Q ss_pred HHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHhhcCCCCChhhHHHHHHHHHHHHHHcCCCCCHHHH
Q 036198 158 LLMILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQTLEEMIQMGHAPDNFTY 237 (499)
Q Consensus 158 ~~~~l~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~~~~~la~~~~~~m~~~g~~p~~~~~ 237 (499)
--..+...|..-|...|-+|.|+.+|..+.+. ..--....
T Consensus 105 -----------------qr~lAl~qL~~Dym~aGl~DRAE~~f~~L~de-----------------------~efa~~Al 144 (389)
T COG2956 105 -----------------QRLLALQQLGRDYMAAGLLDRAEDIFNQLVDE-----------------------GEFAEGAL 144 (389)
T ss_pred -----------------HHHHHHHHHHHHHHHhhhhhHHHHHHHHHhcc-----------------------hhhhHHHH
Confidence 11234556778899999999999999998752 01134466
Q ss_pred HHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHH
Q 036198 238 NTAIDTFCKARMVTEAADLFEFMRTKGSTISSPT-AKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEG 316 (499)
Q Consensus 238 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~ 316 (499)
..|+..|-...+|++|+++-+++.+.+....... ...|.-+...+....+.+.|..++.+..+.+ +-....--.+-+.
T Consensus 145 qqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~-~~cvRAsi~lG~v 223 (389)
T COG2956 145 QQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQAD-KKCVRASIILGRV 223 (389)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhC-ccceehhhhhhHH
Confidence 7899999999999999999999998874211111 2345666667777889999999999998774 2233334446678
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcChhhHHHHHHHHHhcCCchHH
Q 036198 317 MCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGA 396 (499)
Q Consensus 317 ~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a 396 (499)
+...|+++.|.+.++...+.+..--..+...|..+|.+.|+.++....+..+.+.. +....-..+-..-......+.|
T Consensus 224 ~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~--~g~~~~l~l~~lie~~~G~~~A 301 (389)
T COG2956 224 ELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETN--TGADAELMLADLIELQEGIDAA 301 (389)
T ss_pred HHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcc--CCccHHHHHHHHHHHhhChHHH
Confidence 89999999999999999998766667788999999999999999999999998864 3444444444444555666777
Q ss_pred HHHHHHHhHCCCCCCHHHHHHHHHHHH---hCCCHHHHHHHHHHHHHCC
Q 036198 397 FETWHEMDKRGCAQDVDTYCVMIDGLF---DCSKVEEACFLLEEVVNKG 442 (499)
Q Consensus 397 ~~~~~~m~~~~~~p~~~~~~~li~~~~---~~g~~~~a~~~~~~m~~~~ 442 (499)
...+.+-... +|+...+..+|..-. ..|+..+-..++++|....
T Consensus 302 q~~l~~Ql~r--~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvge~ 348 (389)
T COG2956 302 QAYLTRQLRR--KPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVGEQ 348 (389)
T ss_pred HHHHHHHHhh--CCcHHHHHHHHHhhhccccccchhhhHHHHHHHHHHH
Confidence 7776665554 699999999998754 3456777788888887543
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.39 E-value=2.1e-09 Score=106.86 Aligned_cols=404 Identities=13% Similarity=0.054 Sum_probs=210.5
Q ss_pred HHHHHHHhccCCCchHHHHHhhC----CCC-----CCHHHHHHHHHccCCChHHHHHHHHHhhcCCCCCCCHHHHHHHHH
Q 036198 53 KLYEAIIDNSNAYDNMEKALDSL----GVP-----LTTDSVVGVLQRFQFEEKIAFRFFMWAGHQDNYAHEPLAYNLMID 123 (499)
Q Consensus 53 ~~~~~l~~~~~~~~~~~~al~~~----~~~-----~~~~~~~~~l~~~~~~~~~a~~~f~~~~~~~~~~~~~~~~~~li~ 123 (499)
..|..+.+++-..|++++|..-+ ... ++.--+-++.- ..++-+.+...|+.+.++. +-+..+...+..
T Consensus 308 es~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i-~~~dle~s~~~fEkv~k~~--p~~~etm~iLG~ 384 (1018)
T KOG2002|consen 308 ESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYI-KRGDLEESKFCFEKVLKQL--PNNYETMKILGC 384 (1018)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHH-HhchHHHHHHHHHHHHHhC--cchHHHHHHHHh
Confidence 44677777777777777775422 111 11111111111 1222334555555443321 114455555555
Q ss_pred HHhcchhhhhhHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHH------------h----hhcCCCCCHHHHHHHHHHH
Q 036198 124 ILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLMILKQYTE------------K----IKVKTQPEINALNLLLDAL 187 (499)
Q Consensus 124 ~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~l~~~~~------------~----~~~~~~~~~~~~~~li~~~ 187 (499)
.|+.........+.|..++....+.. +.+...+..+-..+.. . ...+.++.+...|.+....
T Consensus 385 Lya~~~~~~~~~d~a~~~l~K~~~~~--~~d~~a~l~laql~e~~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslh 462 (1018)
T KOG2002|consen 385 LYAHSAKKQEKRDKASNVLGKVLEQT--PVDSEAWLELAQLLEQTDPWASLDAYGNALDILESKGKQIPPEVLNNVASLH 462 (1018)
T ss_pred HHHhhhhhhHHHHHHHHHHHHHHhcc--cccHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHH
Confidence 55521112235566777766666554 3444333332222211 1 3344557778888888888
Q ss_pred HhCCChHHHHHHHHHhhcCCCCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCC
Q 036198 188 CKCGLVDYAETICKRVKNKVKPNANTYNILGMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTI 267 (499)
Q Consensus 188 ~~~g~~~~A~~~~~~m~~~~~p~~~~~~~la~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~ 267 (499)
...|++++|...|+.......|... .+.|-.++..+--.+..++-..++.+.|.+.|..+.+..
T Consensus 463 f~~g~~~~A~~~f~~A~~~~~~~~n-------------~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkeh--- 526 (1018)
T KOG2002|consen 463 FRLGNIEKALEHFKSALGKLLEVAN-------------KDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEH--- 526 (1018)
T ss_pred HHhcChHHHHHHHHHHhhhhhhhcC-------------ccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHC---
Confidence 8899999999988887654111000 011111222223334445555566666777776666653
Q ss_pred CCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCCHhhH
Q 036198 268 SSPT-AKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNK-GYPPDIVTY 345 (499)
Q Consensus 268 ~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~-~~~p~~~~~ 345 (499)
|+ +..|--++......+...+|...+.+..... ..++..++.+-..+.+..++..|.+-|....+. ...+|+.+.
T Consensus 527 --p~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d-~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~Ysl 603 (1018)
T KOG2002|consen 527 --PGYIDAYLRLGCMARDKNNLYEASLLLKDALNID-SSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSL 603 (1018)
T ss_pred --chhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcc-cCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHH
Confidence 22 2233333322223345566666666665442 334444554555666666666666644444332 112354444
Q ss_pred HHHHHHHHH------------cCCHHHHHHHHHHHHHCCCCcChhhHHHHHHHHHhcCCchHHHHHHHHHhHCCCCCCHH
Q 036198 346 NCFLKVLCD------------NKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVD 413 (499)
Q Consensus 346 ~~li~~~~~------------~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~ 413 (499)
-+|.+.|.+ .+..++|+++|.+..+.. +.|...-|.+.-.++..|++.+|.++|...++... -...
T Consensus 604 iaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~d-pkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~-~~~d 681 (1018)
T KOG2002|consen 604 IALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRND-PKNMYAANGIGIVLAEKGRFSEARDIFSQVREATS-DFED 681 (1018)
T ss_pred HHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcC-cchhhhccchhhhhhhccCchHHHHHHHHHHHHHh-hCCc
Confidence 444444422 223455666666666543 23455556666666666777777777776666532 1334
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcChhHH
Q 036198 414 TYCVMIDGLFDCSKVEEACFLLEEVVNK-GLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHMRKFYNPVIA 482 (499)
Q Consensus 414 ~~~~li~~~~~~g~~~~a~~~~~~m~~~-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~ 482 (499)
+|-.+.++|+..|++..|.++|+...+. +..-+....+.|.+++.+.|.+.+|.+.+.......+..+.
T Consensus 682 v~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~ 751 (1018)
T KOG2002|consen 682 VWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTS 751 (1018)
T ss_pred eeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccch
Confidence 5666666666667777777766654433 33345556666667777777777766666666665555444
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.39 E-value=5.6e-09 Score=103.13 Aligned_cols=314 Identities=11% Similarity=0.033 Sum_probs=220.0
Q ss_pred hhhhHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHhhcCCCCC
Q 036198 131 KAKQFRLVCSMLDYMKRNNKVFVPVDVLLMILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPN 210 (499)
Q Consensus 131 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~ 210 (499)
-.|++++|.+++.+..+.. +.....|.+|...|-..|+.+++...+-..-.-.+.|
T Consensus 151 arg~~eeA~~i~~EvIkqd------------------------p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d 206 (895)
T KOG2076|consen 151 ARGDLEEAEEILMEVIKQD------------------------PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKD 206 (895)
T ss_pred HhCCHHHHHHHHHHHHHhC------------------------ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCC
Confidence 4599999999999999886 2355567777777777777777766655554444445
Q ss_pred hhhHHHH------------HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCCCCHHHH---
Q 036198 211 ANTYNIL------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTY--- 275 (499)
Q Consensus 211 ~~~~~~l------------a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~p~~~~~--- 275 (499)
..-|..+ |.-.+.+.++... ++...+-.-+..|-+.|+...|.+-|.++.... .+.|..-+
T Consensus 207 ~e~W~~ladls~~~~~i~qA~~cy~rAI~~~p-~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~---p~~d~er~~d~ 282 (895)
T KOG2076|consen 207 YELWKRLADLSEQLGNINQARYCYSRAIQANP-SNWELIYERSSLYQKTGDLKRAMETFLQLLQLD---PPVDIERIEDL 282 (895)
T ss_pred hHHHHHHHHHHHhcccHHHHHHHHHHHHhcCC-cchHHHHHHHHHHHHhChHHHHHHHHHHHHhhC---CchhHHHHHHH
Confidence 5555555 4445555555433 355555666788889999999999999998875 22232222
Q ss_pred -HHHHHHHHHcCCHHHHHHHHHHHHH-cCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhC-----------------
Q 036198 276 -AIMIVALVQNDRMEECFSLLGHMIN-SGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNK----------------- 336 (499)
Q Consensus 276 -~~ll~~~~~~~~~~~a~~~~~~m~~-~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~----------------- 336 (499)
-.+++.+...++-+.|.+.++.... .+-..+...++++...+.+..+++.|......+...
T Consensus 283 i~~~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~ 362 (895)
T KOG2076|consen 283 IRRVAHYFITHNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRRE 362 (895)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccc
Confidence 2344556667777888888887765 233456677888888899999999988887777652
Q ss_pred ----------CCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCC--CCcChhhHHHHHHHHHhcCCchHHHHHHHHHh
Q 036198 337 ----------GYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVG--CWPSVQTYNMLISMYFELGEPDGAFETWHEMD 404 (499)
Q Consensus 337 ----------~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~--~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 404 (499)
+..++..++ -+.-++......+....+...+.+.. +.-+...|.-+..+|...|++.+|.+++..+.
T Consensus 363 ~~~~~~~~~~~~s~~l~v~-rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~ 441 (895)
T KOG2076|consen 363 EPNALCEVGKELSYDLRVI-RLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPIT 441 (895)
T ss_pred cccccccCCCCCCccchhH-hHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHh
Confidence 122222231 12233344445555555555555555 33446688889999999999999999999998
Q ss_pred HCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 036198 405 KRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHMR 474 (499)
Q Consensus 405 ~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~ 474 (499)
.....-+...|-.+.++|...|..++|.+.++..+.... .+...--+|-..+.+.|+.++|.+.+..|.
T Consensus 442 ~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p-~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~ 510 (895)
T KOG2076|consen 442 NREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILAP-DNLDARITLASLYQQLGNHEKALETLEQII 510 (895)
T ss_pred cCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CchhhhhhHHHHHHhcCCHHHHHHHHhccc
Confidence 875555678899999999999999999999999887652 345556677778889999999999998876
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.37 E-value=8.6e-09 Score=100.04 Aligned_cols=297 Identities=10% Similarity=0.016 Sum_probs=208.4
Q ss_pred HHHHHHHccCCChHHHHHHHHHhhcCCCCCCCHHHHHHH-HHHHhcchhhhhhHHHHHHHHHHHHHcCCCcccHHHHHHH
Q 036198 83 SVVGVLQRFQFEEKIAFRFFMWAGHQDNYAHEPLAYNLM-IDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLMI 161 (499)
Q Consensus 83 ~~~~~l~~~~~~~~~a~~~f~~~~~~~~~~~~~~~~~~l-i~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~ 161 (499)
+...++.-...++..|.+......+ ..|++..+-.+ ..+.. +.|+++.|.+.+.+..+..
T Consensus 88 ~~~glla~~~g~~~~A~~~l~~~~~---~~~~~~~~~llaA~aa~----~~g~~~~A~~~l~~a~~~~------------ 148 (409)
T TIGR00540 88 TEEALLKLAEGDYAKAEKLIAKNAD---HAAEPVLNLIKAAEAAQ----QRGDEARANQHLEEAAELA------------ 148 (409)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHhh---cCCCCHHHHHHHHHHHH----HCCCHHHHHHHHHHHHHhC------------
Confidence 3445555567777788888765533 34554444333 45555 7899999999999987654
Q ss_pred HHHHHHhhhcCCCCCH--HHHHHHHHHHHhCCChHHHHHHHHHhhcCCCCChhhHHHHHHHHHHHHHHcCCCCCHHHHHH
Q 036198 162 LKQYTEKIKVKTQPEI--NALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQTLEEMIQMGHAPDNFTYNT 239 (499)
Q Consensus 162 l~~~~~~~~~~~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~~~~~la~~~~~~m~~~g~~p~~~~~~~ 239 (499)
|+. ...-+....+...|+++.|.+.++.+.+. -+-+...+..
T Consensus 149 -------------p~~~l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~-----------------------~P~~~~~l~l 192 (409)
T TIGR00540 149 -------------GNDNILVEIARTRILLAQNELHAARHGVDKLLEM-----------------------APRHKEVLKL 192 (409)
T ss_pred -------------CcCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-----------------------CCCCHHHHHH
Confidence 333 34444578888999999999999988763 1226678889
Q ss_pred HHHHHHhcCCHhHHHHHHHHHHHcCCCCCCCCHHHHH-HHHHHH---HHcCCHHHHHHHHHHHHHcC---CCcCHHhHHH
Q 036198 240 AIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYA-IMIVAL---VQNDRMEECFSLLGHMINSG---CLPDVSTYKE 312 (499)
Q Consensus 240 li~~~~~~g~~~~a~~~~~~m~~~~~~~~~p~~~~~~-~ll~~~---~~~~~~~~a~~~~~~m~~~~---~~~~~~~~~~ 312 (499)
+...+...|++++|.+++..+.+.+. ++...+. .-..++ ...+..+++.+.+..+.+.. .+.+...+..
T Consensus 193 l~~~~~~~~d~~~a~~~l~~l~k~~~----~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~ 268 (409)
T TIGR00540 193 AEEAYIRSGAWQALDDIIDNMAKAGL----FDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIA 268 (409)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHcCC----CCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHH
Confidence 99999999999999999999999862 2333331 111111 22333333334444444432 1237888889
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhH-HHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCh---hhHHHHHHHHH
Q 036198 313 VLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTY-NCFLKVLCDNKNGDEALRLYGRMIEVGCWPSV---QTYNMLISMYF 388 (499)
Q Consensus 313 ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~-~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~---~~~~~li~~~~ 388 (499)
+...+...|+.++|.+++++..+.........+ ..........++.+.+.+.++...+.. |+. ....++...|.
T Consensus 269 ~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~--p~~~~~~ll~sLg~l~~ 346 (409)
T TIGR00540 269 LAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNV--DDKPKCCINRALGQLLM 346 (409)
T ss_pred HHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhC--CCChhHHHHHHHHHHHH
Confidence 999999999999999999999886433221111 122222334578888999998877643 443 45568889999
Q ss_pred hcCCchHHHHHHHHHhHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 036198 389 ELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVN 440 (499)
Q Consensus 389 ~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 440 (499)
+.|++++|.+.|+........|+...+..+...+.+.|+.++|.+++++...
T Consensus 347 ~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 347 KHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred HcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 9999999999999654444579999999999999999999999999998643
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.1e-09 Score=97.88 Aligned_cols=202 Identities=13% Similarity=0.121 Sum_probs=127.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHH
Q 036198 272 AKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKV 351 (499)
Q Consensus 272 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~ 351 (499)
...+..+...+...|++++|.+.+++..+.. +.+...+..+...+...|++++|.+.++...+... .+...+..+...
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~~~~~ 108 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLNP-NNGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CCHHHHHHHHHH
Confidence 4455555666666666666666666665442 23345555566666666666666666666655432 234455566666
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCC-cChhhHHHHHHHHHhcCCchHHHHHHHHHhHCCCCCCHHHHHHHHHHHHhCCCHHH
Q 036198 352 LCDNKNGDEALRLYGRMIEVGCW-PSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEE 430 (499)
Q Consensus 352 ~~~~g~~~~a~~~~~~m~~~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~ 430 (499)
+...|++++|.+.+++....... .....+..+..++...|++++|.+.+.+..+.. +.+...+..+...+...|++++
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~ 187 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRGQYKD 187 (234)
T ss_pred HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcCCHHH
Confidence 66677777777777766653211 223455556667777777777777777776542 2234566677777777888888
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhc
Q 036198 431 ACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHMRKFY 477 (499)
Q Consensus 431 a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~ 477 (499)
|...+++.... .+.+...+..+...+...|+.++|..+.+.+.+.+
T Consensus 188 A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 233 (234)
T TIGR02521 188 ARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQKLF 233 (234)
T ss_pred HHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhC
Confidence 88888877766 23455666666777777888888888777776543
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.35 E-value=2.9e-10 Score=108.56 Aligned_cols=247 Identities=11% Similarity=0.050 Sum_probs=190.4
Q ss_pred CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHhHHH
Q 036198 233 DNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKE 312 (499)
Q Consensus 233 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ 312 (499)
+..+...+.++|...+++++|+++|+.+.+...- ..-+.++|.+.+-.+-+.=. --.+-+++.+.. +-.+.+|.+
T Consensus 352 t~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~-rv~~meiyST~LWHLq~~v~---Ls~Laq~Li~~~-~~sPesWca 426 (638)
T KOG1126|consen 352 TGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPY-RVKGMEIYSTTLWHLQDEVA---LSYLAQDLIDTD-PNSPESWCA 426 (638)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc-cccchhHHHHHHHHHHhhHH---HHHHHHHHHhhC-CCCcHHHHH
Confidence 4466778889999999999999999999886532 23467888888776543211 112223333332 456889999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcChh---hHHHHHHHHHh
Q 036198 313 VLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQ---TYNMLISMYFE 389 (499)
Q Consensus 313 ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~---~~~~li~~~~~ 389 (499)
+.++|.-+++.+.|++.|++..+.+.. ...+|+.+..-+....++|.|...|+.... .|.. .|-.|.-.|.+
T Consensus 427 ~GNcfSLQkdh~~Aik~f~RAiQldp~-faYayTLlGhE~~~~ee~d~a~~~fr~Al~----~~~rhYnAwYGlG~vy~K 501 (638)
T KOG1126|consen 427 LGNCFSLQKDHDTAIKCFKRAIQLDPR-FAYAYTLLGHESIATEEFDKAMKSFRKALG----VDPRHYNAWYGLGTVYLK 501 (638)
T ss_pred hcchhhhhhHHHHHHHHHHHhhccCCc-cchhhhhcCChhhhhHHHHhHHHHHHhhhc----CCchhhHHHHhhhhheec
Confidence 999999999999999999999886432 678999999999999999999999999875 3444 45556778999
Q ss_pred cCCchHHHHHHHHHhHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 036198 390 LGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKL 469 (499)
Q Consensus 390 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~ 469 (499)
.++++.|+-.|+...+-+. -+.+....+...+-+.|+.++|+++++++.....+ |+..--.-...+...+++++|...
T Consensus 502 qek~e~Ae~~fqkA~~INP-~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~k-n~l~~~~~~~il~~~~~~~eal~~ 579 (638)
T KOG1126|consen 502 QEKLEFAEFHFQKAVEINP-SNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPK-NPLCKYHRASILFSLGRYVEALQE 579 (638)
T ss_pred cchhhHHHHHHHhhhcCCc-cchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCC-CchhHHHHHHHHHhhcchHHHHHH
Confidence 9999999999999987532 25566677777888999999999999999988755 555555566778889999999999
Q ss_pred HHHHHhhcChhHHHHHHHHHhhh
Q 036198 470 SDHMRKFYNPVIARRLALNQKRV 492 (499)
Q Consensus 470 ~~~m~~~~~~~~~~~~~~~~~~~ 492 (499)
++++++.-+.... .+.+..+.+
T Consensus 580 LEeLk~~vP~es~-v~~llgki~ 601 (638)
T KOG1126|consen 580 LEELKELVPQESS-VFALLGKIY 601 (638)
T ss_pred HHHHHHhCcchHH-HHHHHHHHH
Confidence 9999998666544 444444433
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.35 E-value=4.1e-08 Score=97.23 Aligned_cols=351 Identities=16% Similarity=0.139 Sum_probs=251.8
Q ss_pred CCChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHHhhhc
Q 036198 92 QFEEKIAFRFFMWAGHQDNYAHEPLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLMILKQYTEKIKV 171 (499)
Q Consensus 92 ~~~~~~a~~~f~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~l~~~~~~~~~ 171 (499)
+++...|.+++..+.++.. -....|..|...|- ..|+.+++...+--.-..+
T Consensus 152 rg~~eeA~~i~~EvIkqdp--~~~~ay~tL~~IyE----qrGd~eK~l~~~llAAHL~---------------------- 203 (895)
T KOG2076|consen 152 RGDLEEAEEILMEVIKQDP--RNPIAYYTLGEIYE----QRGDIEKALNFWLLAAHLN---------------------- 203 (895)
T ss_pred hCCHHHHHHHHHHHHHhCc--cchhhHHHHHHHHH----HcccHHHHHHHHHHHHhcC----------------------
Confidence 4666778888888766544 36788999999998 8899998887765554443
Q ss_pred CCCCCHHHHHHHHHHHHhCCChHHHHHHHHHhhcCCCCChhh-HHH--H---------HHHHHHHHHHcCCCCCHHHH--
Q 036198 172 KTQPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANT-YNI--L---------GMQTLEEMIQMGHAPDNFTY-- 237 (499)
Q Consensus 172 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~~-~~~--l---------a~~~~~~m~~~g~~p~~~~~-- 237 (499)
+-|...|-.+-....+.|+++.|.-.|.+..+..+++... |.- | |.+.|.++.....+.|..-+
T Consensus 204 --p~d~e~W~~ladls~~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d 281 (895)
T KOG2076|consen 204 --PKDYELWKRLADLSEQLGNINQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIED 281 (895)
T ss_pred --CCChHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHH
Confidence 2355677777777777777777777777776654444221 111 1 66666666665443343333
Q ss_pred --HHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-----------
Q 036198 238 --NTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCL----------- 304 (499)
Q Consensus 238 --~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~----------- 304 (499)
-.+++.+...++-+.|.+.++.....+. ...+...++.+...+.+...++.+.....++......
T Consensus 282 ~i~~~~~~~~~~~~~e~a~~~le~~~s~~~--~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~ 359 (895)
T KOG2076|consen 282 LIRRVAHYFITHNERERAAKALEGALSKEK--DEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDER 359 (895)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHhhcc--ccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhh
Confidence 3445667778888999999998887443 3567778899999999999999999998888762222
Q ss_pred ----------------cCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCC--CCCCHhhHHHHHHHHHHcCCHHHHHHHHH
Q 036198 305 ----------------PDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKG--YPPDIVTYNCFLKVLCDNKNGDEALRLYG 366 (499)
Q Consensus 305 ----------------~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~--~~p~~~~~~~li~~~~~~g~~~~a~~~~~ 366 (499)
++..++ -++-++.+....+....+.......+ +.-+...|.-+..+|...|++++|..+|.
T Consensus 360 ~~~~~~~~~~~~~~~s~~l~v~-rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~ 438 (895)
T KOG2076|consen 360 RREEPNALCEVGKELSYDLRVI-RLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLS 438 (895)
T ss_pred ccccccccccCCCCCCccchhH-hHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHH
Confidence 222221 12233444555555555555555555 33355678889999999999999999999
Q ss_pred HHHHCCCCcChhhHHHHHHHHHhcCCchHHHHHHHHHhHCCCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHHHH------
Q 036198 367 RMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQ-DVDTYCVMIDGLFDCSKVEEACFLLEEVV------ 439 (499)
Q Consensus 367 ~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~------ 439 (499)
.+......-+...|--+..+|...|.++.|.+.+...... .| +...--.|-..+-+.|+.++|.+.+..+.
T Consensus 439 ~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~--~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~ 516 (895)
T KOG2076|consen 439 PITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLIL--APDNLDARITLASLYQQLGNHEKALETLEQIINPDGRN 516 (895)
T ss_pred HHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhc--CCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccc
Confidence 9998755566789999999999999999999999999875 33 34445566677889999999999999854
Q ss_pred --HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhc
Q 036198 440 --NKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHMRKFY 477 (499)
Q Consensus 440 --~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~ 477 (499)
..+..|...........+...|+.++-..+...|...+
T Consensus 517 ~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi~t~~~Lv~~~ 556 (895)
T KOG2076|consen 517 AEACAWEPERRILAHRCDILFQVGKREEFINTASTLVDDF 556 (895)
T ss_pred hhhccccHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 33466777777788888999999998777777776643
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.33 E-value=3.4e-09 Score=96.59 Aligned_cols=348 Identities=13% Similarity=0.106 Sum_probs=171.2
Q ss_pred HHHHHHHHHhhcC-CCCCCC--HHHHHHHHHHHhcchhhhhhHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHHhhhcC
Q 036198 96 KIAFRFFMWAGHQ-DNYAHE--PLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLMILKQYTEKIKVK 172 (499)
Q Consensus 96 ~~a~~~f~~~~~~-~~~~~~--~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~l~~~~~~~~~~ 172 (499)
.+|++|++....+ +.+..+ ....+.+-..+. +.|+++.|..-|+++.+..
T Consensus 254 skaikfyrmaldqvpsink~~rikil~nigvtfi----q~gqy~dainsfdh~m~~~----------------------- 306 (840)
T KOG2003|consen 254 SKAIKFYRMALDQVPSINKDMRIKILNNIGVTFI----QAGQYDDAINSFDHCMEEA----------------------- 306 (840)
T ss_pred HHHHHHHHHHHhhccccchhhHHHHHhhcCeeEE----ecccchhhHhhHHHHHHhC-----------------------
Confidence 4677777765433 122111 233444444455 7888888888888877665
Q ss_pred CCCCHHHHHHHHHHHHhCCChHHHHHHHHHhhcC-------------CCCChhhHHHH-HHHHHHHHHHc----------
Q 036198 173 TQPEINALNLLLDALCKCGLVDYAETICKRVKNK-------------VKPNANTYNIL-GMQTLEEMIQM---------- 228 (499)
Q Consensus 173 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-------------~~p~~~~~~~l-a~~~~~~m~~~---------- 228 (499)
|+..+--.|+-++..-|+.++..+.|.+|..- -.|+....+.- --+.+..|.+.
T Consensus 307 --pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd~lk~~ek~~ka~aek~i~ 384 (840)
T KOG2003|consen 307 --PNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKNDHLKNMEKENKADAEKAII 384 (840)
T ss_pred --ccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhHHHHHHHHhhhhhHHHHHH
Confidence 77665445555555678899999999988541 12222222221 11222222211
Q ss_pred --------CCCCCHHH-------------HH--------HHHHHHHhcCCHhHHHHHHHHHHHcCCCCCCCCHHHHH-HH
Q 036198 229 --------GHAPDNFT-------------YN--------TAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYA-IM 278 (499)
Q Consensus 229 --------g~~p~~~~-------------~~--------~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~p~~~~~~-~l 278 (499)
-+.||... +. .-..-|.+.|+++.|+++++-+.+++.. ..+...-| .+
T Consensus 385 ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilkv~~~kdnk--~~saaa~nl~~ 462 (840)
T KOG2003|consen 385 TAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEILKVFEKKDNK--TASAAANNLCA 462 (840)
T ss_pred HHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHHHHHhccch--hhHHHhhhhHH
Confidence 12222110 00 1122367889999999999888776532 11111111 11
Q ss_pred HHHH----------------------------------HHcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHH
Q 036198 279 IVAL----------------------------------VQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVE 324 (499)
Q Consensus 279 l~~~----------------------------------~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~ 324 (499)
+..+ ..+|++++|...|.+.....-.-....||+= -.+-..|+++
T Consensus 463 l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfnig-lt~e~~~~ld 541 (840)
T KOG2003|consen 463 LRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFNIG-LTAEALGNLD 541 (840)
T ss_pred HHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHHhc-ccHHHhcCHH
Confidence 1111 1135666666666666654322222333322 2244556666
Q ss_pred HHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcChhhHHHHHHHHHhcCCchHHHHHHHHHh
Q 036198 325 EAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMD 404 (499)
Q Consensus 325 ~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 404 (499)
+|++.|-.+... ...+..+..-+.+.|-...+...|.+++-+.... ++.|....+-|...|-+.|+-..|.+.+-+--
T Consensus 542 eald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsy 619 (840)
T KOG2003|consen 542 EALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSY 619 (840)
T ss_pred HHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhcc
Confidence 666666554321 1113344444444555555555555555443321 22344455555555555555555554433322
Q ss_pred HCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH-HhcCCHHHHHHHHHHHHhhcChh
Q 036198 405 KRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQL-SVIGDLGAIHKLSDHMRKFYNPV 480 (499)
Q Consensus 405 ~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~-~~~g~~~~a~~~~~~m~~~~~~~ 480 (499)
.. ++-|..+..-|...|....-++++..+|++.. -+.|+..-|..++..| .+.|++.+|.++++.+.+.||..
T Consensus 620 ry-fp~nie~iewl~ayyidtqf~ekai~y~ekaa--liqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfped 693 (840)
T KOG2003|consen 620 RY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAA--LIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPED 693 (840)
T ss_pred cc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHH--hcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccc
Confidence 11 22244444444444445555555555555432 1345555555555433 34566666666666555555543
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.32 E-value=4.4e-12 Score=82.27 Aligned_cols=47 Identities=38% Similarity=0.619 Sum_probs=19.0
Q ss_pred CHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcChhhHHHHHHHH
Q 036198 341 DIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMY 387 (499)
Q Consensus 341 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~ 387 (499)
|..+||++|.+|++.|++++|.++|++|.+.|+.||..||+.+|++|
T Consensus 2 ~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~ 48 (50)
T PF13041_consen 2 DVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGL 48 (50)
T ss_pred chHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 33344444444444444444444444444444444444444444333
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.32 E-value=2.7e-09 Score=95.29 Aligned_cols=202 Identities=10% Similarity=0.023 Sum_probs=168.9
Q ss_pred CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHhHHH
Q 036198 233 DNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKE 312 (499)
Q Consensus 233 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ 312 (499)
....+..+...+...|++++|.+.+++..+.. +.+...+..+...+...|++++|.+.+++..+.. +.+...+..
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~----p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~ 104 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHD----PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNN 104 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC----cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHH
Confidence 45678888999999999999999999998764 3457788889999999999999999999998764 445677888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCC-CCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcChhhHHHHHHHHHhcC
Q 036198 313 VLEGMCLAGKVEEAYKFLEEMGNKGYP-PDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELG 391 (499)
Q Consensus 313 ll~~~~~~g~~~~a~~~~~~m~~~~~~-p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~ 391 (499)
+...+...|++++|.+.++........ .....+..+...+...|++++|...+.+..+... .+...+..+...+...|
T Consensus 105 ~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~ 183 (234)
T TIGR02521 105 YGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDP-QRPESLLELAELYYLRG 183 (234)
T ss_pred HHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-CChHHHHHHHHHHHHcC
Confidence 889999999999999999998875322 2345677788889999999999999999887542 34567888999999999
Q ss_pred CchHHHHHHHHHhHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHC
Q 036198 392 EPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNK 441 (499)
Q Consensus 392 ~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 441 (499)
++++|...+++..+. .+.+...+..+...+...|+.++|..+.+.+...
T Consensus 184 ~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 232 (234)
T TIGR02521 184 QYKDARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQKL 232 (234)
T ss_pred CHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 999999999998876 3446677778888888999999999998887654
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.32 E-value=5.7e-08 Score=96.95 Aligned_cols=357 Identities=14% Similarity=0.104 Sum_probs=249.2
Q ss_pred HHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHHhhhcCCCC
Q 036198 96 KIAFRFFMWAGHQDNYAHEPLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLMILKQYTEKIKVKTQP 175 (499)
Q Consensus 96 ~~a~~~f~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 175 (499)
+.|..-|+...++.+ +|. ...+..++.. +..+++..|+.+|......+. ..+|
T Consensus 147 ~~A~a~F~~Vl~~sp--~Ni--l~LlGkA~i~--ynkkdY~~al~yyk~al~inp---------------------~~~a 199 (1018)
T KOG2002|consen 147 DDADAQFHFVLKQSP--DNI--LALLGKARIA--YNKKDYRGALKYYKKALRINP---------------------ACKA 199 (1018)
T ss_pred HHHHHHHHHHHhhCC--cch--HHHHHHHHHH--hccccHHHHHHHHHHHHhcCc---------------------ccCC
Confidence 456666666654422 122 2233333321 156788888888888666553 2344
Q ss_pred CHHHHHHHHHHHHhCCChHHHHHHHHHhhcCCCCChhhHHHH---------------HHHHHHHHHHcCCCCCHHHHHHH
Q 036198 176 EINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNIL---------------GMQTLEEMIQMGHAPDNFTYNTA 240 (499)
Q Consensus 176 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~~~~~l---------------a~~~~~~m~~~g~~p~~~~~~~l 240 (499)
|+.+ .+..++.+.|+.+.|+..|.+..+--|.++.++-.| +...+........ -++...+.|
T Consensus 200 D~rI--gig~Cf~kl~~~~~a~~a~~ralqLdp~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~-~nP~~l~~L 276 (1018)
T KOG2002|consen 200 DVRI--GIGHCFWKLGMSEKALLAFERALQLDPTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENN-ENPVALNHL 276 (1018)
T ss_pred Cccc--hhhhHHHhccchhhHHHHHHHHHhcChhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcC-CCcHHHHHH
Confidence 4322 222567789999999999999887655555555555 4444444433322 267778889
Q ss_pred HHHHHhcCCHhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHH--hHHHHHHHHH
Q 036198 241 IDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVS--TYKEVLEGMC 318 (499)
Q Consensus 241 i~~~~~~g~~~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~--~~~~ll~~~~ 318 (499)
.+-|.-.|+++.++.+...+...... -..-...|--+.++|-..|++++|...|.+..+.. ++.. .+--+...+.
T Consensus 277 An~fyfK~dy~~v~~la~~ai~~t~~-~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~--~d~~~l~~~GlgQm~i 353 (1018)
T KOG2002|consen 277 ANHFYFKKDYERVWHLAEHAIKNTEN-KSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKAD--NDNFVLPLVGLGQMYI 353 (1018)
T ss_pred HHHHhhcccHHHHHHHHHHHHHhhhh-hHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccC--CCCccccccchhHHHH
Confidence 99999999999999999988775421 11224568889999999999999999998887663 4443 3455788999
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcC----CHHHHHHHHHHHHHCCCCcChhhHHHHHHHHHhcCCch
Q 036198 319 LAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNK----NGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPD 394 (499)
Q Consensus 319 ~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g----~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~ 394 (499)
+.|+++.+...|+.+.+.. +-+..+..++...|...+ ..+.|..++....+.- .-|...|-.+...+.. ++..
T Consensus 354 ~~~dle~s~~~fEkv~k~~-p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e~-~d~~ 430 (1018)
T KOG2002|consen 354 KRGDLEESKFCFEKVLKQL-PNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLEQ-TDPW 430 (1018)
T ss_pred HhchHHHHHHHHHHHHHhC-cchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHh-cChH
Confidence 9999999999999998874 336677777777777665 4566777777766643 3466677777766654 4444
Q ss_pred HHHHHHHHH----hHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCCCCH------HHHHHHHHHHHhcC
Q 036198 395 GAFETWHEM----DKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNK---GLKLPY------RKFDSYLMQLSVIG 461 (499)
Q Consensus 395 ~a~~~~~~m----~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~---~~~p~~------~~~~~ll~~~~~~g 461 (499)
.++.++... ...+..+.+...|.+.......|.+.+|...|+..... ...++. .+-..+.+.+-..+
T Consensus 431 ~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~ 510 (1018)
T KOG2002|consen 431 ASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELH 510 (1018)
T ss_pred HHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhh
Confidence 447666654 34566678888999999999999999999999988765 122232 23445556667788
Q ss_pred CHHHHHHHHHHHHhhcChhHHHHHHHH
Q 036198 462 DLGAIHKLSDHMRKFYNPVIARRLALN 488 (499)
Q Consensus 462 ~~~~a~~~~~~m~~~~~~~~~~~~~~~ 488 (499)
+.+.|.+.+..+.+.+|..+.-+..+.
T Consensus 511 ~~~~A~e~Yk~Ilkehp~YId~ylRl~ 537 (1018)
T KOG2002|consen 511 DTEVAEEMYKSILKEHPGYIDAYLRLG 537 (1018)
T ss_pred hhhHHHHHHHHHHHHCchhHHHHHHhh
Confidence 999999999999999999888887774
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.30 E-value=9e-10 Score=108.15 Aligned_cols=203 Identities=17% Similarity=0.147 Sum_probs=143.7
Q ss_pred hcCCCCCCCHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHHh--hhcCCCCCHHHHHHH
Q 036198 106 GHQDNYAHEPLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLMILKQYTEK--IKVKTQPEINALNLL 183 (499)
Q Consensus 106 ~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~~~~~~~~~l 183 (499)
.+..|+.|+.+||..+|.-|| ..|+.+.|- +|.-|.-+.. ++.-..+..++....+. ....-.|...+|..|
T Consensus 16 ~e~~gi~PnRvtyqsLiarYc----~~gdieaat-if~fm~~ksL-pv~e~vf~~lv~sh~~And~Enpkep~aDtyt~L 89 (1088)
T KOG4318|consen 16 HEISGILPNRVTYQSLIARYC----TKGDIEAAT-IFPFMEIKSL-PVREGVFRGLVASHKEANDAENPKEPLADTYTNL 89 (1088)
T ss_pred HHHhcCCCchhhHHHHHHHHc----ccCCCcccc-chhhhhcccc-cccchhHHHHHhcccccccccCCCCCchhHHHHH
Confidence 356789999999999999999 999999888 8888877664 44555555555543333 222337889999999
Q ss_pred HHHHHhCCChHH---HHHHHHHhhcC----------------------CCCChhhHHHH---------------------
Q 036198 184 LDALCKCGLVDY---AETICKRVKNK----------------------VKPNANTYNIL--------------------- 217 (499)
Q Consensus 184 i~~~~~~g~~~~---A~~~~~~m~~~----------------------~~p~~~~~~~l--------------------- 217 (499)
..+|...||+.. ..+.+..+... .-||..+-..+
T Consensus 90 l~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllkll~~~Pvsa 169 (1088)
T KOG4318|consen 90 LKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLKLLAKVPVSA 169 (1088)
T ss_pred HHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHhhCCccc
Confidence 999999998654 33322222111 12222221111
Q ss_pred ------------------HHHHHHHHHHcCC-CCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCCCCHHHHHHH
Q 036198 218 ------------------GMQTLEEMIQMGH-APDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIM 278 (499)
Q Consensus 218 ------------------a~~~~~~m~~~g~-~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~p~~~~~~~l 278 (499)
..++++ |.+.+. .|+..+|..++.+-.-+|+++.|..++.+|.+.| .+.+.+-|-.+
T Consensus 170 ~~~p~~vfLrqnv~~ntpvekLl~-~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~g---fpir~HyFwpL 245 (1088)
T KOG4318|consen 170 WNAPFQVFLRQNVVDNTPVEKLLN-MCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKG---FPIRAHYFWPL 245 (1088)
T ss_pred ccchHHHHHHHhccCCchHHHHHH-HHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcC---CCcccccchhh
Confidence 222222 223333 4899999999999999999999999999999999 56677766666
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcC
Q 036198 279 IVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAG 321 (499)
Q Consensus 279 l~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g 321 (499)
+-+ .++...+..++.-|.+.|+.|+..|+..-+-.+..+|
T Consensus 246 l~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~ 285 (1088)
T KOG4318|consen 246 LLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNG 285 (1088)
T ss_pred hhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcch
Confidence 655 7888888889999999999999999877666655544
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.30 E-value=8.4e-12 Score=80.95 Aligned_cols=49 Identities=31% Similarity=0.447 Sum_probs=26.1
Q ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 036198 410 QDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLS 458 (499)
Q Consensus 410 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~ 458 (499)
||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..||+.++++|+
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~ 49 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC 49 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence 4555555555555555555555555555555555555555555555544
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.30 E-value=9.4e-11 Score=114.83 Aligned_cols=219 Identities=18% Similarity=0.258 Sum_probs=144.3
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 036198 220 QTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMI 299 (499)
Q Consensus 220 ~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~ 299 (499)
.++-.+...|+.|+..||..+|.-||..|+++.|- +|.-|.-+. .+.+...|+.++.+....++.+.+.
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ks---Lpv~e~vf~~lv~sh~~And~Enpk------- 79 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKS---LPVREGVFRGLVASHKEANDAENPK------- 79 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhccc---ccccchhHHHHHhcccccccccCCC-------
Confidence 35677888999999999999999999999999998 888887654 2333334444444444333333322
Q ss_pred HcCCCcCHHhHHHHHHHHHhcCCH--------------------------------------------------------
Q 036198 300 NSGCLPDVSTYKEVLEGMCLAGKV-------------------------------------------------------- 323 (499)
Q Consensus 300 ~~~~~~~~~~~~~ll~~~~~~g~~-------------------------------------------------------- 323 (499)
.|...||+.|+.+|...||.
T Consensus 80 ----ep~aDtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglw 155 (1088)
T KOG4318|consen 80 ----EPLADTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLW 155 (1088)
T ss_pred ----CCchhHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHH
Confidence 23334444444444444433
Q ss_pred HHHHHHHHHHHhCCCCCCHhhHHH---HHHHHHHcCCHHHHHHHHHHHHHCCCCcChhhHHHHHHHHHhcCCchHHHHHH
Q 036198 324 EEAYKFLEEMGNKGYPPDIVTYNC---FLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETW 400 (499)
Q Consensus 324 ~~a~~~~~~m~~~~~~p~~~~~~~---li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~ 400 (499)
+.+.+++..+... .-++. ++.-+.. .....+++........-.|+..+|.+++.+-...|+.+.|..++
T Consensus 156 aqllkll~~~Pvs------a~~~p~~vfLrqnv~--~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll 227 (1088)
T KOG4318|consen 156 AQLLKLLAKVPVS------AWNAPFQVFLRQNVV--DNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLL 227 (1088)
T ss_pred HHHHHHHhhCCcc------cccchHHHHHHHhcc--CCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHH
Confidence 3333333222111 11111 1111111 11122233322222111489999999999999999999999999
Q ss_pred HHHhHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 036198 401 HEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLG 464 (499)
Q Consensus 401 ~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~ 464 (499)
.+|++.|++.+..-|..++-+ .++..-+..+++-|.+.|+.|+..|+...+..+.++|...
T Consensus 228 ~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~ 288 (1088)
T KOG4318|consen 228 YEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTK 288 (1088)
T ss_pred HHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhh
Confidence 999999999999888888877 8888899999999999999999999999998888855533
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.4e-08 Score=102.40 Aligned_cols=269 Identities=10% Similarity=0.033 Sum_probs=156.1
Q ss_pred CCHHHHHHHHHHHhc-chhhhhhHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHHhhhcCCCC-CHHHHHHHHHHHH--
Q 036198 113 HEPLAYNLMIDILSS-TKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLMILKQYTEKIKVKTQP-EINALNLLLDALC-- 188 (499)
Q Consensus 113 ~~~~~~~~li~~~~~-~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~~~li~~~~-- 188 (499)
.+...|...+++... .....+.+++|..+|++..+.. | +...|..+..++.
T Consensus 254 ~~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ld-------------------------P~~a~a~~~La~~~~~~ 308 (553)
T PRK12370 254 NSIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMS-------------------------PNSIAPYCALAECYLSM 308 (553)
T ss_pred CChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcC-------------------------CccHHHHHHHHHHHHHH
Confidence 355666666665421 0112456778888888877665 3 3345554444433
Q ss_pred -------hCCChHHHHHHHHHhhcCCCCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHH
Q 036198 189 -------KCGLVDYAETICKRVKNKVKPNANTYNILGMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMR 261 (499)
Q Consensus 189 -------~~g~~~~A~~~~~~m~~~~~p~~~~~~~la~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 261 (499)
..+++++|...+++..+. . +-+...+..+...+...|++++|...|++..
T Consensus 309 ~~~g~~~~~~~~~~A~~~~~~Al~l----------------------d-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al 365 (553)
T PRK12370 309 AQMGIFDKQNAMIKAKEHAIKATEL----------------------D-HNNPQALGLLGLINTIHSEYIVGSLLFKQAN 365 (553)
T ss_pred HHcCCcccchHHHHHHHHHHHHHhc----------------------C-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 223466777777666541 1 1155666677777777888888888888877
Q ss_pred HcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcC-HHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 036198 262 TKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPD-VSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPP 340 (499)
Q Consensus 262 ~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p 340 (499)
+.+ +.+...+..+...+...|++++|...+++..+.. |+ ...+..++..+...|++++|...+++......+-
T Consensus 366 ~l~----P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~--P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~ 439 (553)
T PRK12370 366 LLS----PISADIKYYYGWNLFMAGQLEEALQTINECLKLD--PTRAAAGITKLWITYYHTGIDDAIRLGDELRSQHLQD 439 (553)
T ss_pred HhC----CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCChhhHHHHHHHHHhccCHHHHHHHHHHHHHhcccc
Confidence 765 3346667777777788888888888888877764 33 2233334445666777788888777766543222
Q ss_pred CHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcC-hhhHHHHHHHHHhcCCchHHHHHHHHHhHC-CCCCCHHHHHHH
Q 036198 341 DIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPS-VQTYNMLISMYFELGEPDGAFETWHEMDKR-GCAQDVDTYCVM 418 (499)
Q Consensus 341 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-~~~p~~~~~~~l 418 (499)
+...+..+..++...|+.++|...+.++... .|+ ....+.+...|+..| ++|...++.+.+. ...+....+..+
T Consensus 440 ~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~~~~~~~~~~ 515 (553)
T PRK12370 440 NPILLSMQVMFLSLKGKHELARKLTKEISTQ--EITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQRIDNNPGLLPL 515 (553)
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc--cchhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHhhcCchHHHH
Confidence 3445566666777778888888877776543 233 233344445556555 3666666665442 112222222222
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHCC
Q 036198 419 IDGLFDCSKVEEACFLLEEVVNKG 442 (499)
Q Consensus 419 i~~~~~~g~~~~a~~~~~~m~~~~ 442 (499)
.+.-.|+-+.+..+ +++.+.|
T Consensus 516 --~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 516 --VLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred --HHHHHhhhHHHHHH-HHhhccc
Confidence 23334554444444 6655543
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.2e-07 Score=86.65 Aligned_cols=367 Identities=15% Similarity=0.099 Sum_probs=240.1
Q ss_pred CCHHHHHHHHHccC------CChHHHHHHHHHhhcCCCCCCCH-HHHHHHHHHHhcchhhhhhHHHHHHHHHHHHHcCCC
Q 036198 79 LTTDSVVGVLQRFQ------FEEKIAFRFFMWAGHQDNYAHEP-LAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKV 151 (499)
Q Consensus 79 ~~~~~~~~~l~~~~------~~~~~a~~~f~~~~~~~~~~~~~-~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~ 151 (499)
+..+.-..++..++ ...+.|..-|+.++.. .|+. ..||..|.+++ -|+.++..+-|..|......
T Consensus 270 ink~~rikil~nigvtfiq~gqy~dainsfdh~m~~---~pn~~a~~nl~i~~f~-----i~d~ekmkeaf~kli~ip~~ 341 (840)
T KOG2003|consen 270 INKDMRIKILNNIGVTFIQAGQYDDAINSFDHCMEE---APNFIAALNLIICAFA-----IGDAEKMKEAFQKLIDIPGE 341 (840)
T ss_pred cchhhHHHHHhhcCeeEEecccchhhHhhHHHHHHh---CccHHhhhhhhhhhee-----cCcHHHHHHHHHHHhcCCCC
Confidence 33445555665543 3345677778776543 2454 45777777777 67888899999998765432
Q ss_pred cc-----------cHHHHHH-----HHHHHHHh---------------hhcCCCCCHHH-------------H-------
Q 036198 152 FV-----------PVDVLLM-----ILKQYTEK---------------IKVKTQPEINA-------------L------- 180 (499)
Q Consensus 152 ~~-----------~~~~~~~-----~l~~~~~~---------------~~~~~~~~~~~-------------~------- 180 (499)
+. +...++. .++-+.+. ..--+.|+... |
T Consensus 342 ~dddkyi~~~ddp~~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dl 421 (840)
T KOG2003|consen 342 IDDDKYIKEKDDPDDNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDL 421 (840)
T ss_pred CCcccccCCcCCcchHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhh
Confidence 11 1112222 22222222 11112222110 0
Q ss_pred -HHHHHHHHhCCChHHHHHHHHHhhcC-CCCChhhHHHH-HHHHHHHHH-------HcCCCCCHHHHHHH-----HHHHH
Q 036198 181 -NLLLDALCKCGLVDYAETICKRVKNK-VKPNANTYNIL-GMQTLEEMI-------QMGHAPDNFTYNTA-----IDTFC 245 (499)
Q Consensus 181 -~~li~~~~~~g~~~~A~~~~~~m~~~-~~p~~~~~~~l-a~~~~~~m~-------~~g~~p~~~~~~~l-----i~~~~ 245 (499)
-.-.-.+.+.|+++.|.++++.+... .+.-...-+.| ++.+++--. -..+..+..-||.- .....
T Consensus 422 ei~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f 501 (840)
T KOG2003|consen 422 EINKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAF 501 (840)
T ss_pred hhhHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceee
Confidence 01123467899999999999888653 11111111111 222221000 00111122222222 22234
Q ss_pred hcCCHhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHH
Q 036198 246 KARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEE 325 (499)
Q Consensus 246 ~~g~~~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~ 325 (499)
..|++++|.+.+++....+ ..-....||. .-.+...|++++|++.|-.+... +.-+..+...+...|-...+...
T Consensus 502 ~ngd~dka~~~ykeal~nd---asc~ealfni-glt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aq 576 (840)
T KOG2003|consen 502 ANGDLDKAAEFYKEALNND---ASCTEALFNI-GLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQ 576 (840)
T ss_pred ecCcHHHHHHHHHHHHcCc---hHHHHHHHHh-cccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHH
Confidence 5789999999999998765 2223333443 33457789999999999887643 23466777778888999999999
Q ss_pred HHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcChhhHHHHHHHHHhcCCchHHHHHHHHHhH
Q 036198 326 AYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDK 405 (499)
Q Consensus 326 a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 405 (499)
|.+++.+.... ++.|+...+-|...|-+.|+-..|.+.+-+--.. ++-+..|...|...|....-++++...|++..-
T Consensus 577 aie~~~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaal 654 (840)
T KOG2003|consen 577 AIELLMQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL 654 (840)
T ss_pred HHHHHHHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh
Confidence 99999877554 5668888999999999999999999887664442 445778889999999999999999999998654
Q ss_pred CCCCCCHHHHHHHHHHHH-hCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 036198 406 RGCAQDVDTYCVMIDGLF-DCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDL 463 (499)
Q Consensus 406 ~~~~p~~~~~~~li~~~~-~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~ 463 (499)
++|+..-|..+|..|. +.|++.+|++++++...+ ++-|...+.-|++.|...|-.
T Consensus 655 --iqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrk-fpedldclkflvri~~dlgl~ 710 (840)
T KOG2003|consen 655 --IQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRK-FPEDLDCLKFLVRIAGDLGLK 710 (840)
T ss_pred --cCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh-CccchHHHHHHHHHhccccch
Confidence 5899999999998766 689999999999998765 566888888889988887754
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.26 E-value=7.1e-08 Score=89.15 Aligned_cols=225 Identities=10% Similarity=0.035 Sum_probs=174.9
Q ss_pred HHHHhcCCHhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcC
Q 036198 242 DTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAG 321 (499)
Q Consensus 242 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g 321 (499)
..+.-.|+.-.|.+-|+...+... .+...|--+...|....+.++..+.|+...+.+ +-++.+|..-...+.-.+
T Consensus 334 tF~fL~g~~~~a~~d~~~~I~l~~----~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~ 408 (606)
T KOG0547|consen 334 TFHFLKGDSLGAQEDFDAAIKLDP----AFNSLYIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQ 408 (606)
T ss_pred hhhhhcCCchhhhhhHHHHHhcCc----ccchHHHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHH
Confidence 334557888899999999988762 223337777788999999999999999998875 456778888888888889
Q ss_pred CHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcChhhHHHHHHHHHhcCCchHHHHHHH
Q 036198 322 KVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWH 401 (499)
Q Consensus 322 ~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~ 401 (499)
++++|..=|++.+..... +...|--+..+..+.+.+++++..|++..+. ++-....|+.....+..+++++.|.+.|+
T Consensus 409 q~e~A~aDF~Kai~L~pe-~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD 486 (606)
T KOG0547|consen 409 QYEEAIADFQKAISLDPE-NAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYD 486 (606)
T ss_pred HHHHHHHHHHHHhhcChh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHH
Confidence 999999999998876433 5566777777777899999999999999874 44456799999999999999999999999
Q ss_pred HHhHCC-----CCCCHH--HHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 036198 402 EMDKRG-----CAQDVD--TYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHMR 474 (499)
Q Consensus 402 ~m~~~~-----~~p~~~--~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~ 474 (499)
...+.. +..+.. ..-.++-.= =.+++..|.+++.+..+.+.+ ....|.+|...-...|+.++|+++|++-.
T Consensus 487 ~ai~LE~~~~~~~v~~~plV~Ka~l~~q-wk~d~~~a~~Ll~KA~e~Dpk-ce~A~~tlaq~~lQ~~~i~eAielFEksa 564 (606)
T KOG0547|consen 487 KAIELEPREHLIIVNAAPLVHKALLVLQ-WKEDINQAENLLRKAIELDPK-CEQAYETLAQFELQRGKIDEAIELFEKSA 564 (606)
T ss_pred HHHhhccccccccccchhhhhhhHhhhc-hhhhHHHHHHHHHHHHccCch-HHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 887642 111221 112222111 238899999999999888754 66789999999999999999999999865
Q ss_pred h
Q 036198 475 K 475 (499)
Q Consensus 475 ~ 475 (499)
.
T Consensus 565 ~ 565 (606)
T KOG0547|consen 565 Q 565 (606)
T ss_pred H
Confidence 4
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.22 E-value=1.6e-08 Score=101.90 Aligned_cols=217 Identities=11% Similarity=-0.020 Sum_probs=159.1
Q ss_pred cCCHhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHH
Q 036198 247 ARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEA 326 (499)
Q Consensus 247 ~g~~~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a 326 (499)
.+++++|...+++..+.+ +-+..++..+...+...|++++|...|++..+.+ +.+...+..+...+...|++++|
T Consensus 317 ~~~~~~A~~~~~~Al~ld----P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eA 391 (553)
T PRK12370 317 QNAMIKAKEHAIKATELD----HNNPQALGLLGLINTIHSEYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEA 391 (553)
T ss_pred chHHHHHHHHHHHHHhcC----CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHH
Confidence 355899999999999876 4577888888889999999999999999999875 44567788888999999999999
Q ss_pred HHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcChhhHHHHHHHHHhcCCchHHHHHHHHHhHC
Q 036198 327 YKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKR 406 (499)
Q Consensus 327 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 406 (499)
...++...+.+.. +...+..++..+...|++++|...++++.+...+-+...+..+..++...|+.++|...+.++...
T Consensus 392 i~~~~~Al~l~P~-~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~ 470 (553)
T PRK12370 392 LQTINECLKLDPT-RAAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ 470 (553)
T ss_pred HHHHHHHHhcCCC-ChhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc
Confidence 9999999887543 223334445556778999999999999876542223455677888888999999999999987654
Q ss_pred CCCCC-HHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 036198 407 GCAQD-VDTYCVMIDGLFDCSKVEEACFLLEEVVNKG-LKLPYRKFDSYLMQLSVIGDLGAIHKLSDHMRKF 476 (499)
Q Consensus 407 ~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~-~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~ 476 (499)
.|+ ....+.+...|+..| ++|...++.+.+.. -.+....+ +-..|.-.|+.+.+... +++.+.
T Consensus 471 --~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~-~~~~~~ 535 (553)
T PRK12370 471 --EITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQRIDNNPGL--LPLVLVAHGEAIAEKMW-NKFKNE 535 (553)
T ss_pred --cchhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHhhcCchH--HHHHHHHHhhhHHHHHH-HHhhcc
Confidence 343 334455566677777 47777777766431 12222222 33345556777666655 777665
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.22 E-value=2.8e-09 Score=93.28 Aligned_cols=233 Identities=12% Similarity=0.108 Sum_probs=197.2
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHhH-HHHHH
Q 036198 237 YNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTY-KEVLE 315 (499)
Q Consensus 237 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~-~~ll~ 315 (499)
-+.+.++|.+.|.+.+|++.|+...+. .|-+.||..+-+.|.+.++++.|+.+|.+-.+. .|-.+|| .-+.+
T Consensus 226 k~Q~gkCylrLgm~r~AekqlqssL~q-----~~~~dTfllLskvY~ridQP~~AL~~~~~gld~--fP~~VT~l~g~AR 298 (478)
T KOG1129|consen 226 KQQMGKCYLRLGMPRRAEKQLQSSLTQ-----FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS--FPFDVTYLLGQAR 298 (478)
T ss_pred HHHHHHHHHHhcChhhhHHHHHHHhhc-----CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc--CCchhhhhhhhHH
Confidence 378899999999999999999998885 467889999999999999999999999998876 4555554 55778
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcChhhHHHHHHHHHhcCCchH
Q 036198 316 GMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDG 395 (499)
Q Consensus 316 ~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~ 395 (499)
.+-..++.++|.++++...+... .++....++...|.-.++++.|+..|.++.+.|+ .+...|+.+.-+|.-.+++|-
T Consensus 299 i~eam~~~~~a~~lYk~vlk~~~-~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~-~speLf~NigLCC~yaqQ~D~ 376 (478)
T KOG1129|consen 299 IHEAMEQQEDALQLYKLVLKLHP-INVEAIACIAVGYFYDNNPEMALRYYRRILQMGA-QSPELFCNIGLCCLYAQQIDL 376 (478)
T ss_pred HHHHHHhHHHHHHHHHHHHhcCC-ccceeeeeeeeccccCCChHHHHHHHHHHHHhcC-CChHHHhhHHHHHHhhcchhh
Confidence 88899999999999999887743 3677788888889999999999999999999997 578889999999999999999
Q ss_pred HHHHHHHHhHCCCCCC--HHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 036198 396 AFETWHEMDKRGCAQD--VDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHM 473 (499)
Q Consensus 396 a~~~~~~m~~~~~~p~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m 473 (499)
++.-|.+....--.|+ ...|-.+-...+..|++..|.+.|+-.+..+. -....++.|.-.-.+.|++++|..++...
T Consensus 377 ~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~-~h~ealnNLavL~~r~G~i~~Arsll~~A 455 (478)
T KOG1129|consen 377 VLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDA-QHGEALNNLAVLAARSGDILGARSLLNAA 455 (478)
T ss_pred hHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCc-chHHHHHhHHHHHhhcCchHHHHHHHHHh
Confidence 9999998876533343 34566677777789999999999999887764 36788999988889999999999999998
Q ss_pred HhhcCh
Q 036198 474 RKFYNP 479 (499)
Q Consensus 474 ~~~~~~ 479 (499)
....|.
T Consensus 456 ~s~~P~ 461 (478)
T KOG1129|consen 456 KSVMPD 461 (478)
T ss_pred hhhCcc
Confidence 776543
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.20 E-value=4.7e-07 Score=81.98 Aligned_cols=294 Identities=12% Similarity=0.040 Sum_probs=222.7
Q ss_pred HHHHccCCChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHHHcCCCcccHHHHHHHHHHH
Q 036198 86 GVLQRFQFEEKIAFRFFMWAGHQDNYAHEPLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLMILKQY 165 (499)
Q Consensus 86 ~~l~~~~~~~~~a~~~f~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~l~~~ 165 (499)
.+++-...++..|.+....... .+-. ....|-.-..+-. ..|+.+.+-.++.+..+...
T Consensus 91 gl~~l~eG~~~qAEkl~~rnae-~~e~-p~l~~l~aA~AA~----qrgd~~~an~yL~eaae~~~--------------- 149 (400)
T COG3071 91 GLLKLFEGDFQQAEKLLRRNAE-HGEQ-PVLAYLLAAEAAQ----QRGDEDRANRYLAEAAELAG--------------- 149 (400)
T ss_pred HHHHHhcCcHHHHHHHHHHhhh-cCcc-hHHHHHHHHHHHH----hcccHHHHHHHHHHHhccCC---------------
Confidence 3444455666677766664322 2211 2233434445555 88999999999999887631
Q ss_pred HHhhhcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHhhcCCCCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 036198 166 TEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQTLEEMIQMGHAPDNFTYNTAIDTFC 245 (499)
Q Consensus 166 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~~~~~la~~~~~~m~~~g~~p~~~~~~~li~~~~ 245 (499)
.++...+-+..+.....|+++.|..-.+++.+- -+-.........++|.
T Consensus 150 --------~~~l~v~ltrarlll~~~d~~aA~~~v~~ll~~-----------------------~pr~~~vlrLa~r~y~ 198 (400)
T COG3071 150 --------DDTLAVELTRARLLLNRRDYPAARENVDQLLEM-----------------------TPRHPEVLRLALRAYI 198 (400)
T ss_pred --------CchHHHHHHHHHHHHhCCCchhHHHHHHHHHHh-----------------------CcCChHHHHHHHHHHH
Confidence 366778888889999999999999988877541 1226778889999999
Q ss_pred hcCCHhHHHHHHHHHHHcCCCCCCCC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHH
Q 036198 246 KARMVTEAADLFEFMRTKGSTISSPT-------AKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMC 318 (499)
Q Consensus 246 ~~g~~~~a~~~~~~m~~~~~~~~~p~-------~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~ 318 (499)
+.|++..+..+...+.+.+. --+ ..+|..+++-....+..+.-...|++..+. ..-++..-..++.-+.
T Consensus 199 ~~g~~~~ll~~l~~L~ka~~---l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~-lr~~p~l~~~~a~~li 274 (400)
T COG3071 199 RLGAWQALLAILPKLRKAGL---LSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQPRK-LRNDPELVVAYAERLI 274 (400)
T ss_pred HhccHHHHHHHHHHHHHccC---CChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhccHH-hhcChhHHHHHHHHHH
Confidence 99999999999999999884 223 247788888877777777777777777654 3456677778889999
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcChhhHHHHHHHHHhcCCchHHHH
Q 036198 319 LAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFE 398 (499)
Q Consensus 319 ~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~ 398 (499)
++|+.++|.++..+..+++..|+ -...-.+.+-++.+.-.+..+.-.+.- +-+...+..|-..|.+.+.+.+|.+
T Consensus 275 ~l~~~~~A~~~i~~~Lk~~~D~~----L~~~~~~l~~~d~~~l~k~~e~~l~~h-~~~p~L~~tLG~L~~k~~~w~kA~~ 349 (400)
T COG3071 275 RLGDHDEAQEIIEDALKRQWDPR----LCRLIPRLRPGDPEPLIKAAEKWLKQH-PEDPLLLSTLGRLALKNKLWGKASE 349 (400)
T ss_pred HcCChHHHHHHHHHHHHhccChh----HHHHHhhcCCCCchHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhHHHHHHH
Confidence 99999999999999999887766 223344567788887777777755432 2344788889999999999999999
Q ss_pred HHHHHhHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC
Q 036198 399 TWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKG 442 (499)
Q Consensus 399 ~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 442 (499)
.|+...+. .|+..+|+.+..++.+.|+..+|.+..++....-
T Consensus 350 ~leaAl~~--~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~~ 391 (400)
T COG3071 350 ALEAALKL--RPSASDYAELADALDQLGEPEEAEQVRREALLLT 391 (400)
T ss_pred HHHHHHhc--CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHHh
Confidence 99977765 7999999999999999999999999999877443
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.18 E-value=1e-07 Score=93.10 Aligned_cols=291 Identities=17% Similarity=0.166 Sum_probs=175.4
Q ss_pred hhhhHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHhhcCCCCC
Q 036198 131 KAKQFRLVCSMLDYMKRNNKVFVPVDVLLMILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPN 210 (499)
Q Consensus 131 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~ 210 (499)
..|++++|++.++.-...- .............+.+.|+.++|..+|..+.++.|
T Consensus 16 e~g~~~~AL~~L~~~~~~I------------------------~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNP-- 69 (517)
T PF12569_consen 16 EAGDYEEALEHLEKNEKQI------------------------LDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNP-- 69 (517)
T ss_pred HCCCHHHHHHHHHhhhhhC------------------------CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC--
Confidence 7899999999997754432 23455678888899999999999999999887533
Q ss_pred hhhHHHHHHHHHHHHHHcCCCCCHHHH-HHHHHHHHh-----cCCHhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHH
Q 036198 211 ANTYNILGMQTLEEMIQMGHAPDNFTY-NTAIDTFCK-----ARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQ 284 (499)
Q Consensus 211 ~~~~~~la~~~~~~m~~~g~~p~~~~~-~~li~~~~~-----~g~~~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~ 284 (499)
+...| ..+..+.+- ..+.+...++++++.... |.......+.-.+..
T Consensus 70 ----------------------dn~~Yy~~L~~~~g~~~~~~~~~~~~~~~~y~~l~~~y-----p~s~~~~rl~L~~~~ 122 (517)
T PF12569_consen 70 ----------------------DNYDYYRGLEEALGLQLQLSDEDVEKLLELYDELAEKY-----PRSDAPRRLPLDFLE 122 (517)
T ss_pred ----------------------CcHHHHHHHHHHHhhhcccccccHHHHHHHHHHHHHhC-----ccccchhHhhcccCC
Confidence 33333 333333311 124566677777776653 222222111111111
Q ss_pred cCCH-HHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhC----C----------CCCCHh--hHHH
Q 036198 285 NDRM-EECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNK----G----------YPPDIV--TYNC 347 (499)
Q Consensus 285 ~~~~-~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~----~----------~~p~~~--~~~~ 347 (499)
...+ ..+..++..+...|+++ +|+.|-..|....+.+-..+++...... + -+|+.. ++.-
T Consensus 123 g~~F~~~~~~yl~~~l~KgvPs---lF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~ 199 (517)
T PF12569_consen 123 GDEFKERLDEYLRPQLRKGVPS---LFSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYF 199 (517)
T ss_pred HHHHHHHHHHHHHHHHhcCCch---HHHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHH
Confidence 1122 23445555566666432 4555555555555555555555554322 1 123332 3344
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCcC-hhhHHHHHHHHHhcCCchHHHHHHHHHhHCCCCCCHHHHHHHHHHHHhCC
Q 036198 348 FLKVLCDNKNGDEALRLYGRMIEVGCWPS-VQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCS 426 (499)
Q Consensus 348 li~~~~~~g~~~~a~~~~~~m~~~~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g 426 (499)
+...|...|++++|++++++.++.. |+ +..|..-.+.+-+.|++.+|.+.++..++.... |...-+..+..+.++|
T Consensus 200 lAqhyd~~g~~~~Al~~Id~aI~ht--Pt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~-DRyiNsK~aKy~LRa~ 276 (517)
T PF12569_consen 200 LAQHYDYLGDYEKALEYIDKAIEHT--PTLVELYMTKARILKHAGDLKEAAEAMDEARELDLA-DRYINSKCAKYLLRAG 276 (517)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChh-hHHHHHHHHHHHHHCC
Confidence 4556667788888888888777643 54 456677777777788888888888777765433 5566666677777788
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHH--------HHHHHHHHHhcCCHHHHHHHHHHHHhhcChh
Q 036198 427 KVEEACFLLEEVVNKGLKLPYRK--------FDSYLMQLSVIGDLGAIHKLSDHMRKFYNPV 480 (499)
Q Consensus 427 ~~~~a~~~~~~m~~~~~~p~~~~--------~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~ 480 (499)
++++|.+++......+..|-... ......+|.+.|++..|.+.|..+.+.|...
T Consensus 277 ~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~f~~~ 338 (517)
T PF12569_consen 277 RIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLKHFDDF 338 (517)
T ss_pred CHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 88888887777766554332221 1344567777788887777777776654443
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.3e-08 Score=89.08 Aligned_cols=236 Identities=10% Similarity=-0.019 Sum_probs=195.0
Q ss_pred CHHHHHHHHHHHHhCCChHHHHHHHHHhhcCCCCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHH
Q 036198 176 EINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAAD 255 (499)
Q Consensus 176 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~~~~~la~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~ 255 (499)
|-.--+-+..+|.+.|.+.+|.+.|..-.. -.|-+.||-.|-+.|.+..+.+.|+.
T Consensus 222 dwwWk~Q~gkCylrLgm~r~AekqlqssL~------------------------q~~~~dTfllLskvY~ridQP~~AL~ 277 (478)
T KOG1129|consen 222 DWWWKQQMGKCYLRLGMPRRAEKQLQSSLT------------------------QFPHPDTFLLLSKVYQRIDQPERALL 277 (478)
T ss_pred hHHHHHHHHHHHHHhcChhhhHHHHHHHhh------------------------cCCchhHHHHHHHHHHHhccHHHHHH
Confidence 334447889999999999999998887654 24577888899999999999999999
Q ss_pred HHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 036198 256 LFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGN 335 (499)
Q Consensus 256 ~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~ 335 (499)
+|.+-.+.- +-++.-..-+.+.+-..++.++|.++|+...+.. +.++....++...|.-.++++.|+..++.+.+
T Consensus 278 ~~~~gld~f----P~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLq 352 (478)
T KOG1129|consen 278 VIGEGLDSF----PFDVTYLLGQARIHEAMEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQ 352 (478)
T ss_pred HHhhhhhcC----CchhhhhhhhHHHHHHHHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHH
Confidence 999988763 3444444556678888899999999999998764 55677777888889999999999999999999
Q ss_pred CCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcC--hhhHHHHHHHHHhcCCchHHHHHHHHHhHCCCCCCHH
Q 036198 336 KGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPS--VQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVD 413 (499)
Q Consensus 336 ~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~--~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~ 413 (499)
.|+. +...|+.+.-+|.-.+++|-++.-|++....--.|+ ..+|-.+-......|++.-|.+.|+.....+.. +..
T Consensus 353 mG~~-speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~-h~e 430 (478)
T KOG1129|consen 353 MGAQ-SPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQ-HGE 430 (478)
T ss_pred hcCC-ChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcc-hHH
Confidence 9987 889999999999999999999999999876543344 456777777778899999999999988776433 566
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHCC
Q 036198 414 TYCVMIDGLFDCSKVEEACFLLEEVVNKG 442 (499)
Q Consensus 414 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 442 (499)
.++.|.-.-.+.|++++|..+++...+..
T Consensus 431 alnNLavL~~r~G~i~~Arsll~~A~s~~ 459 (478)
T KOG1129|consen 431 ALNNLAVLAARSGDILGARSLLNAAKSVM 459 (478)
T ss_pred HHHhHHHHHhhcCchHHHHHHHHHhhhhC
Confidence 78888888889999999999999887654
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.18 E-value=3.2e-06 Score=78.24 Aligned_cols=397 Identities=13% Similarity=0.095 Sum_probs=267.6
Q ss_pred ccccccccCCCcchHHHHHHHHHhccCCCchHHHHHhhCCCCCC--H--H-------HHHHHHHccCCChHHHHHHHH-H
Q 036198 37 VCKVFDESSDSVSDVAKLYEAIIDNSNAYDNMEKALDSLGVPLT--T--D-------SVVGVLQRFQFEEKIAFRFFM-W 104 (499)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~al~~~~~~~~--~--~-------~~~~~l~~~~~~~~~a~~~f~-~ 104 (499)
+++.|+.+.+.+..+..++-.-+..--++..+..|-..++..++ | + .+..+|. .-..|.++|. |
T Consensus 92 ARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~Lg----Ni~gaRqiferW 167 (677)
T KOG1915|consen 92 ARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYMEEMLG----NIAGARQIFERW 167 (677)
T ss_pred HHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHHHhc----ccHHHHHHHHHH
Confidence 34555555555555555555555555555444444333322111 1 1 1222222 2235677776 5
Q ss_pred hhcCCCCCCCHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHHhhhcCCCCCHHHHHHHH
Q 036198 105 AGHQDNYAHEPLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLMILKQYTEKIKVKTQPEINALNLLL 184 (499)
Q Consensus 105 ~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~li 184 (499)
| ...|+...|.+.|+-=. +-+.++.|.+++++.+-. .|++..|--..
T Consensus 168 ~----~w~P~eqaW~sfI~fEl----RykeieraR~IYerfV~~-------------------------HP~v~~wikya 214 (677)
T KOG1915|consen 168 M----EWEPDEQAWLSFIKFEL----RYKEIERARSIYERFVLV-------------------------HPKVSNWIKYA 214 (677)
T ss_pred H----cCCCcHHHHHHHHHHHH----HhhHHHHHHHHHHHHhee-------------------------cccHHHHHHHH
Confidence 5 45799999999999988 899999999999998754 38888888888
Q ss_pred HHHHhCCChHHHHHHHHHhhcCCCCChh---hHHHH------------HHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcC
Q 036198 185 DALCKCGLVDYAETICKRVKNKVKPNAN---TYNIL------------GMQTLEEMIQMGHAPD-NFTYNTAIDTFCKAR 248 (499)
Q Consensus 185 ~~~~~~g~~~~A~~~~~~m~~~~~p~~~---~~~~l------------a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g 248 (499)
..=.++|++..|.++|+...+.+..|.. .+.+. |..++.-.++.-.+-. ...|..+...=-+-|
T Consensus 215 rFE~k~g~~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfG 294 (677)
T KOG1915|consen 215 RFEEKHGNVALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFG 294 (677)
T ss_pred HHHHhcCcHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhc
Confidence 8888889999998888887653322221 12221 3334444444322211 334444444444455
Q ss_pred CHhHHHHH--------HHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCH-------HhHHHH
Q 036198 249 MVTEAADL--------FEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDV-------STYKEV 313 (499)
Q Consensus 249 ~~~~a~~~--------~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~-------~~~~~l 313 (499)
+.....+. ++.+.+.+ +.|-.+|-..++.-...|+.+...++|+..... ++|-. ..|--+
T Consensus 295 d~~gIEd~Iv~KRk~qYE~~v~~n----p~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWi 369 (677)
T KOG1915|consen 295 DKEGIEDAIVGKRKFQYEKEVSKN----PYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWI 369 (677)
T ss_pred chhhhHHHHhhhhhhHHHHHHHhC----CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHH
Confidence 54433332 34455553 567788989999989999999999999998865 34422 122211
Q ss_pred ---HHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHH----HHcCCHHHHHHHHHHHHHCCCCcChhhHHHHHHH
Q 036198 314 ---LEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVL----CDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISM 386 (499)
Q Consensus 314 ---l~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~----~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~ 386 (499)
+-.-....+.+.+.++++..++. ++....|+.-+=-.| .++.++..|.+++...+ |..|-..+|-..|..
T Consensus 370 nYalyeEle~ed~ertr~vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI--G~cPK~KlFk~YIel 446 (677)
T KOG1915|consen 370 NYALYEELEAEDVERTRQVYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI--GKCPKDKLFKGYIEL 446 (677)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh--ccCCchhHHHHHHHH
Confidence 22223567899999999988874 454556665544444 46789999999998876 456888999999999
Q ss_pred HHhcCCchHHHHHHHHHhHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCCHHH
Q 036198 387 YFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKG-LKLPYRKFDSYLMQLSVIGDLGA 465 (499)
Q Consensus 387 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~-~~p~~~~~~~ll~~~~~~g~~~~ 465 (499)
-.+.+++|.+..+++...+.+. -|..+|......=...|+.+.|..+|.-.+++. +......|.+.|+--...|.+++
T Consensus 447 ElqL~efDRcRkLYEkfle~~P-e~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ek 525 (677)
T KOG1915|consen 447 ELQLREFDRCRKLYEKFLEFSP-ENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEK 525 (677)
T ss_pred HHHHhhHHHHHHHHHHHHhcCh-HhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHH
Confidence 9999999999999999998753 367788887777778999999999999988764 34456677777777788999999
Q ss_pred HHHHHHHHHhhcCh
Q 036198 466 IHKLSDHMRKFYNP 479 (499)
Q Consensus 466 a~~~~~~m~~~~~~ 479 (499)
|..+++++.+.-.-
T Consensus 526 aR~LYerlL~rt~h 539 (677)
T KOG1915|consen 526 ARALYERLLDRTQH 539 (677)
T ss_pred HHHHHHHHHHhccc
Confidence 99999999876443
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.17 E-value=1.4e-06 Score=83.66 Aligned_cols=368 Identities=11% Similarity=0.009 Sum_probs=210.5
Q ss_pred CCCCCCCHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHHHcCCCccc-HHHHHHHHHHHHHh-----------hhcC-CC
Q 036198 108 QDNYAHEPLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVP-VDVLLMILKQYTEK-----------IKVK-TQ 174 (499)
Q Consensus 108 ~~~~~~~~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~-~~~~~~~l~~~~~~-----------~~~~-~~ 174 (499)
..|+..+..-|-.=...|- +.|..-.+..+.......|+..-+ ..++......|..+ .... .+
T Consensus 472 ~ngv~i~rdqWl~eAe~~e----~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvfp 547 (913)
T KOG0495|consen 472 ANGVEINRDQWLKEAEACE----DAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVFP 547 (913)
T ss_pred hcceeecHHHHHHHHHHHh----hcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhcc
Confidence 4455566666666555565 556666666666665555532111 12222222222211 1111 12
Q ss_pred CCHHHHHHHHHHHHhCCChHHHHHHHHHhhcCCCCChhhHHHH------------HHHHHHHHHHcCCCCCHHHHHHHHH
Q 036198 175 PEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNIL------------GMQTLEEMIQMGHAPDNFTYNTAID 242 (499)
Q Consensus 175 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~~~~~l------------a~~~~~~m~~~g~~p~~~~~~~li~ 242 (499)
-+...|......--..|..+.-..+|.+....++-....|-.. |..++....+.... +...|-..+.
T Consensus 548 ~k~slWlra~~~ek~hgt~Esl~Allqkav~~~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pn-seeiwlaavK 626 (913)
T KOG0495|consen 548 CKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPN-SEEIWLAAVK 626 (913)
T ss_pred chhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCC-cHHHHHHHHH
Confidence 2344555555555555666666666666555444444333333 44555555554333 5556666666
Q ss_pred HHHhcCCHhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcC-HHhHHHHHHHHHhcC
Q 036198 243 TFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPD-VSTYKEVLEGMCLAG 321 (499)
Q Consensus 243 ~~~~~g~~~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~ll~~~~~~g 321 (499)
.-....+++.|..+|.+....+ |+...|.--+..---.+..++|.+++++..+. -|+ ...|-.+-..+-+.+
T Consensus 627 le~en~e~eraR~llakar~~s-----gTeRv~mKs~~~er~ld~~eeA~rllEe~lk~--fp~f~Kl~lmlGQi~e~~~ 699 (913)
T KOG0495|consen 627 LEFENDELERARDLLAKARSIS-----GTERVWMKSANLERYLDNVEEALRLLEEALKS--FPDFHKLWLMLGQIEEQME 699 (913)
T ss_pred HhhccccHHHHHHHHHHHhccC-----CcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh--CCchHHHHHHHhHHHHHHH
Confidence 6666666666666666665543 45555555555555556666666666665554 222 233444444555555
Q ss_pred CHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcChhhHHHHHHHHHhcCCchHHHHHHH
Q 036198 322 KVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWH 401 (499)
Q Consensus 322 ~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~ 401 (499)
+.+.|.+.|..=.+. ++-.+..|-.+...=-+.|.+-.|..+++...-.+. -+...|-..|+.-.+.|+.+.|..+..
T Consensus 700 ~ie~aR~aY~~G~k~-cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNP-k~~~lwle~Ir~ElR~gn~~~a~~lma 777 (913)
T KOG0495|consen 700 NIEMAREAYLQGTKK-CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNP-KNALLWLESIRMELRAGNKEQAELLMA 777 (913)
T ss_pred HHHHHHHHHHhcccc-CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCC-CcchhHHHHHHHHHHcCCHHHHHHHHH
Confidence 555555555443222 222334455555555556666667777766655442 355666666777777777666666554
Q ss_pred HHhHC-----------------------------CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 036198 402 EMDKR-----------------------------GCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDS 452 (499)
Q Consensus 402 ~m~~~-----------------------------~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ 452 (499)
+..+. .+..|....-.+...|.....+++|.+.|.+.++.+. ....+|.-
T Consensus 778 kALQecp~sg~LWaEaI~le~~~~rkTks~DALkkce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~-d~GD~wa~ 856 (913)
T KOG0495|consen 778 KALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDP-DNGDAWAW 856 (913)
T ss_pred HHHHhCCccchhHHHHHHhccCcccchHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCC-ccchHHHH
Confidence 43321 1334555666667777778889999999999998873 35678888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhhcChhHHHHHHHHHh
Q 036198 453 YLMQLSVIGDLGAIHKLSDHMRKFYNPVIARRLALNQK 490 (499)
Q Consensus 453 ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~ 490 (499)
+..-+..+|.-+.-.+++.+.....|..=..+..+.++
T Consensus 857 fykfel~hG~eed~kev~~~c~~~EP~hG~~W~avSK~ 894 (913)
T KOG0495|consen 857 FYKFELRHGTEEDQKEVLKKCETAEPTHGELWQAVSKD 894 (913)
T ss_pred HHHHHHHhCCHHHHHHHHHHHhccCCCCCcHHHHHhhh
Confidence 88999999999999999998888766655555554443
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.10 E-value=5.1e-08 Score=94.12 Aligned_cols=254 Identities=17% Similarity=0.085 Sum_probs=158.2
Q ss_pred HHHHHHHHHHHhcchhhhhhHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHHhhhcCCCCCHH-HHHHHHHHHHhCCCh
Q 036198 115 PLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLMILKQYTEKIKVKTQPEIN-ALNLLLDALCKCGLV 193 (499)
Q Consensus 115 ~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~li~~~~~~g~~ 193 (499)
..+...+...|. ..|+++.|..++++..+.- -+.+ .-..|... ..+.+...|...+++
T Consensus 199 ~~~~~~La~~y~----~~g~~e~A~~l~k~Al~~l------------~k~~-----G~~hl~va~~l~~~a~~y~~~~k~ 257 (508)
T KOG1840|consen 199 LRTLRNLAEMYA----VQGRLEKAEPLCKQALRIL------------EKTS-----GLKHLVVASMLNILALVYRSLGKY 257 (508)
T ss_pred HHHHHHHHHHHH----HhccHHHHHHHHHHHHHHH------------HHcc-----CccCHHHHHHHHHHHHHHHHhccH
Confidence 355566788888 9999999999999876550 0000 00123333 344577889999999
Q ss_pred HHHHHHHHHhhcCCCCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCC---CCCC
Q 036198 194 DYAETICKRVKNKVKPNANTYNILGMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGST---ISSP 270 (499)
Q Consensus 194 ~~A~~~~~~m~~~~~p~~~~~~~la~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~---~~~p 270 (499)
++|..+|+++.. +++.......+.-..+++.|..+|.+.|++++|...+++..+.-.. ...|
T Consensus 258 ~eAv~ly~~AL~---------------i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~ 322 (508)
T KOG1840|consen 258 DEAVNLYEEALT---------------IREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHP 322 (508)
T ss_pred HHHHHHHHHHHH---------------HHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChH
Confidence 999999999754 3444433333434567888889999999999999888876543210 0122
Q ss_pred CH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHc---CCCc----CHHhHHHHHHHHHhcCCHHHHHHHHHHHHhC----CC
Q 036198 271 TA-KTYAIMIVALVQNDRMEECFSLLGHMINS---GCLP----DVSTYKEVLEGMCLAGKVEEAYKFLEEMGNK----GY 338 (499)
Q Consensus 271 ~~-~~~~~ll~~~~~~~~~~~a~~~~~~m~~~---~~~~----~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~----~~ 338 (499)
.+ ..++.+...|...+++++|..++....+. -..+ -..+++.|-..|...|++++|.+++++.... +.
T Consensus 323 ~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~ 402 (508)
T KOG1840|consen 323 EVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLG 402 (508)
T ss_pred HHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhccc
Confidence 22 23455666777788888888887765432 1111 2355677777777777777777777665432 11
Q ss_pred --CC-CHhhHHHHHHHHHHcCCHHHHHHHHHHHHH----CCC-CcC-hhhHHHHHHHHHhcCCchHHHHHHHHHh
Q 036198 339 --PP-DIVTYNCFLKVLCDNKNGDEALRLYGRMIE----VGC-WPS-VQTYNMLISMYFELGEPDGAFETWHEMD 404 (499)
Q Consensus 339 --~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~----~~~-~~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~ 404 (499)
.+ ....++.+...|.+.+.+++|.++|.+... .|. .|+ ..+|..|...|...|++++|+++.+...
T Consensus 403 ~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 403 KKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred CcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 11 134556666666666777766666665432 221 122 3466666666767777777666665543
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.09 E-value=5.9e-08 Score=93.71 Aligned_cols=242 Identities=16% Similarity=0.159 Sum_probs=178.1
Q ss_pred CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHc---CCCCCCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHHc-----C-
Q 036198 233 DNFTYNTAIDTFCKARMVTEAADLFEFMRTK---GSTISSPTAKT-YAIMIVALVQNDRMEECFSLLGHMINS-----G- 302 (499)
Q Consensus 233 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~---~~~~~~p~~~~-~~~ll~~~~~~~~~~~a~~~~~~m~~~-----~- 302 (499)
-..+...+...|...|+++.|+.+++...+. +.....|...+ .+.+...|...+++.+|..+|+++... |
T Consensus 198 ~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~ 277 (508)
T KOG1840|consen 198 RLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGE 277 (508)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCC
Confidence 3456677999999999999999999988764 10012344333 334667888999999999999998753 2
Q ss_pred -CCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhC-----CC-CCCH-hhHHHHHHHHHHcCCHHHHHHHHHHHHHC---
Q 036198 303 -CLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNK-----GY-PPDI-VTYNCFLKVLCDNKNGDEALRLYGRMIEV--- 371 (499)
Q Consensus 303 -~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~-----~~-~p~~-~~~~~li~~~~~~g~~~~a~~~~~~m~~~--- 371 (499)
.+.-..+++.|-.+|++.|++++|...++...+- |. .|.+ ..++.+...|+..+++++|..+++...+.
T Consensus 278 ~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~ 357 (508)
T KOG1840|consen 278 DHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLD 357 (508)
T ss_pred CCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHh
Confidence 1222456777888999999999998887765331 21 2222 34667778889999999999999876542
Q ss_pred CCCcC----hhhHHHHHHHHHhcCCchHHHHHHHHHhHC-----C-CCC-CHHHHHHHHHHHHhCCCHHHHHHHHHHHH-
Q 036198 372 GCWPS----VQTYNMLISMYFELGEPDGAFETWHEMDKR-----G-CAQ-DVDTYCVMIDGLFDCSKVEEACFLLEEVV- 439 (499)
Q Consensus 372 ~~~~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-----~-~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~- 439 (499)
-+.++ ..+++.|...|...|++++|++++++.... | ..+ ....++.+...|.+.++..+|.++|.+..
T Consensus 358 ~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~ 437 (508)
T KOG1840|consen 358 APGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKD 437 (508)
T ss_pred hccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHH
Confidence 12222 458899999999999999999999987542 1 122 24567888889999999999999987654
Q ss_pred ---HCCCC-CC-HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 036198 440 ---NKGLK-LP-YRKFDSYLMQLSVIGDLGAIHKLSDHMR 474 (499)
Q Consensus 440 ---~~~~~-p~-~~~~~~ll~~~~~~g~~~~a~~~~~~m~ 474 (499)
..|.. |+ ..+|..|...|...|+++.|.++.+...
T Consensus 438 i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 438 IMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 33422 22 4688999999999999999999988876
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.08 E-value=2.4e-07 Score=77.73 Aligned_cols=204 Identities=11% Similarity=0.036 Sum_probs=157.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHH
Q 036198 274 TYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLC 353 (499)
Q Consensus 274 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~ 353 (499)
+..-+.-.|...|+...|.+-+++..+.. +.+..++..+...|.+.|+.+.|.+-|+........ +-.+.|....-+|
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~-~GdVLNNYG~FLC 114 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPN-NGDVLNNYGAFLC 114 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCC-ccchhhhhhHHHH
Confidence 44556667888888888888888888774 445667788888888888888888888887776433 5667788888888
Q ss_pred HcCCHHHHHHHHHHHHHCCCCc-ChhhHHHHHHHHHhcCCchHHHHHHHHHhHCCCCCCHHHHHHHHHHHHhCCCHHHHH
Q 036198 354 DNKNGDEALRLYGRMIEVGCWP-SVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEAC 432 (499)
Q Consensus 354 ~~g~~~~a~~~~~~m~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~ 432 (499)
..|++++|.+.|++....---+ -..+|..+.-+..+.|+.+.|.+.|++..+.... ...+.-.+.......|++-.|.
T Consensus 115 ~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~-~~~~~l~~a~~~~~~~~y~~Ar 193 (250)
T COG3063 115 AQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQ-FPPALLELARLHYKAGDYAPAR 193 (250)
T ss_pred hCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcC-CChHHHHHHHHHHhcccchHHH
Confidence 8889999998888887753222 2457778888888889999999999888776322 3345667778888889999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcChhH
Q 036198 433 FLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHMRKFYNPVI 481 (499)
Q Consensus 433 ~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~ 481 (499)
.+++.....+. ++..++-..|+.-.+.||.+.+-++=..+.+.||...
T Consensus 194 ~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~s~ 241 (250)
T COG3063 194 LYLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPYSE 241 (250)
T ss_pred HHHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcH
Confidence 88888877765 7888888888888888999988888888888877644
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.07 E-value=1.2e-07 Score=87.73 Aligned_cols=214 Identities=16% Similarity=0.167 Sum_probs=166.4
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 036198 218 GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGH 297 (499)
Q Consensus 218 a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 297 (499)
+..-|+..+.....++. .|--+..+|....+.++.++.|....+.+ +-+..+|..-...+.-.+++++|..=|++
T Consensus 345 a~~d~~~~I~l~~~~~~-lyI~~a~~y~d~~~~~~~~~~F~~A~~ld----p~n~dvYyHRgQm~flL~q~e~A~aDF~K 419 (606)
T KOG0547|consen 345 AQEDFDAAIKLDPAFNS-LYIKRAAAYADENQSEKMWKDFNKAEDLD----PENPDVYYHRGQMRFLLQQYEEAIADFQK 419 (606)
T ss_pred hhhhHHHHHhcCcccch-HHHHHHHHHhhhhccHHHHHHHHHHHhcC----CCCCchhHhHHHHHHHHHHHHHHHHHHHH
Confidence 77777777776554333 27777788999999999999999999886 34566777777777778889999999999
Q ss_pred HHHcCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC---
Q 036198 298 MINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCW--- 374 (499)
Q Consensus 298 m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~--- 374 (499)
.++.. +-+...|-.+.-+..+.++++++...|++.+++ ++..+..|+.....+..+++++.|.+.|+..++....
T Consensus 420 ai~L~-pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~ 497 (606)
T KOG0547|consen 420 AISLD-PENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHL 497 (606)
T ss_pred HhhcC-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhcccccc
Confidence 98874 445667777777888999999999999999887 6668899999999999999999999999998764211
Q ss_pred --cChhhH--HHHHHHHHhcCCchHHHHHHHHHhHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 036198 375 --PSVQTY--NMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVN 440 (499)
Q Consensus 375 --~~~~~~--~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 440 (499)
.+..++ -+++.. .-.+++..|.++++...+...+ ....|..|...-.+.|+.++|+++|++...
T Consensus 498 ~~v~~~plV~Ka~l~~-qwk~d~~~a~~Ll~KA~e~Dpk-ce~A~~tlaq~~lQ~~~i~eAielFEksa~ 565 (606)
T KOG0547|consen 498 IIVNAAPLVHKALLVL-QWKEDINQAENLLRKAIELDPK-CEQAYETLAQFELQRGKIDEAIELFEKSAQ 565 (606)
T ss_pred ccccchhhhhhhHhhh-chhhhHHHHHHHHHHHHccCch-HHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 111111 122221 1348899999999999876322 445788999999999999999999998653
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.03 E-value=2.3e-07 Score=85.71 Aligned_cols=213 Identities=12% Similarity=0.075 Sum_probs=120.0
Q ss_pred HHHHHHHHHHcC-CCCC--HHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 036198 218 GMQTLEEMIQMG-HAPD--NFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSL 294 (499)
Q Consensus 218 a~~~~~~m~~~g-~~p~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~ 294 (499)
+..-+.+++... ..|+ ...|..+...|...|+.++|...|++..+.. +.+...|+.+...+...|++++|...
T Consensus 45 ~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~----P~~~~a~~~lg~~~~~~g~~~~A~~~ 120 (296)
T PRK11189 45 ILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR----PDMADAYNYLGIYLTQAGNFDAAYEA 120 (296)
T ss_pred HHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC----CCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 445555555432 2222 3456666667777777777777777777764 34567777777777777777777777
Q ss_pred HHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC
Q 036198 295 LGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCW 374 (499)
Q Consensus 295 ~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~ 374 (499)
|+...+.. +-+..++..+..++...|++++|.+.|+...+.+ |+..........+...++.++|...|.+..... .
T Consensus 121 ~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~--P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~-~ 196 (296)
T PRK11189 121 FDSVLELD-PTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDD--PNDPYRALWLYLAESKLDPKQAKENLKQRYEKL-D 196 (296)
T ss_pred HHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhC-C
Confidence 77777653 2235566666667777777777777777766653 222211111222334566777777776544321 2
Q ss_pred cChhhHHHHHHHHHhcCCchHHHHHHHHHhHC---CC--CC-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC
Q 036198 375 PSVQTYNMLISMYFELGEPDGAFETWHEMDKR---GC--AQ-DVDTYCVMIDGLFDCSKVEEACFLLEEVVNKG 442 (499)
Q Consensus 375 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~---~~--~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 442 (499)
|+...+ .+ .....|+...+ +.+..+.+. .. .| ....|..+...+.+.|++++|...|++..+.+
T Consensus 197 ~~~~~~-~~--~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~ 266 (296)
T PRK11189 197 KEQWGW-NI--VEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN 266 (296)
T ss_pred ccccHH-HH--HHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 222111 22 22234555443 244444321 00 11 22456666667777777777777777777655
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.03 E-value=6.1e-06 Score=80.96 Aligned_cols=274 Identities=14% Similarity=0.107 Sum_probs=191.0
Q ss_pred ChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHHhhhcCC
Q 036198 94 EEKIAFRFFMWAGHQDNYAHEPLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLMILKQYTEKIKVKT 173 (499)
Q Consensus 94 ~~~~a~~~f~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 173 (499)
..+.|++..... ...+.............+. +.|++++|..+|+.+.+.+
T Consensus 19 ~~~~AL~~L~~~--~~~I~Dk~~~~E~rA~ll~----kLg~~~eA~~~y~~Li~rN------------------------ 68 (517)
T PF12569_consen 19 DYEEALEHLEKN--EKQILDKLAVLEKRAELLL----KLGRKEEAEKIYRELIDRN------------------------ 68 (517)
T ss_pred CHHHHHHHHHhh--hhhCCCHHHHHHHHHHHHH----HcCCHHHHHHHHHHHHHHC------------------------
Confidence 344555555432 2223333455566678888 9999999999999999998
Q ss_pred CCCHHH-HHHHHHHHHhC-----CChHHHHHHHHHhhcCCCCChh-------------hHHHHHHHHHHHHHHcCCCCCH
Q 036198 174 QPEINA-LNLLLDALCKC-----GLVDYAETICKRVKNKVKPNAN-------------TYNILGMQTLEEMIQMGHAPDN 234 (499)
Q Consensus 174 ~~~~~~-~~~li~~~~~~-----g~~~~A~~~~~~m~~~~~p~~~-------------~~~~la~~~~~~m~~~g~~p~~ 234 (499)
|+... |..+..+.+-. .+.+...++|+++.... |... .|...+..++..+...|+++
T Consensus 69 -Pdn~~Yy~~L~~~~g~~~~~~~~~~~~~~~~y~~l~~~y-p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPs-- 144 (517)
T PF12569_consen 69 -PDNYDYYRGLEEALGLQLQLSDEDVEKLLELYDELAEKY-PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPS-- 144 (517)
T ss_pred -CCcHHHHHHHHHHHhhhcccccccHHHHHHHHHHHHHhC-ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCch--
Confidence 44444 44444444222 35677788888886543 2111 22223788888888889763
Q ss_pred HHHHHHHHHHHhcCCHhHHHHHHHHHHHcC----C-------CCCCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 036198 235 FTYNTAIDTFCKARMVTEAADLFEFMRTKG----S-------TISSPTA--KTYAIMIVALVQNDRMEECFSLLGHMINS 301 (499)
Q Consensus 235 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~----~-------~~~~p~~--~~~~~ll~~~~~~~~~~~a~~~~~~m~~~ 301 (499)
+|+.+-..|....+.+-..+++..+.... . ..-+|+. .++..+-..|...|++++|+.+++..+++
T Consensus 145 -lF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h 223 (517)
T PF12569_consen 145 -LFSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH 223 (517)
T ss_pred -HHHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence 45566666776666666677776665431 0 0124554 34566677888999999999999999987
Q ss_pred CCCcC-HHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcChhh-
Q 036198 302 GCLPD-VSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQT- 379 (499)
Q Consensus 302 ~~~~~-~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~- 379 (499)
.|+ +..|..-.+.+-+.|++.+|.+.++........ |...=+-....+.+.|+.++|.+++......+..|-...
T Consensus 224 --tPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~-DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~ 300 (517)
T PF12569_consen 224 --TPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLA-DRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLN 300 (517)
T ss_pred --CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChh-hHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHH
Confidence 455 677888889999999999999999998887654 666666677888899999999999999887664333221
Q ss_pred -----H--HHHHHHHHhcCCchHHHHHHHHHhH
Q 036198 380 -----Y--NMLISMYFELGEPDGAFETWHEMDK 405 (499)
Q Consensus 380 -----~--~~li~~~~~~~~~~~a~~~~~~m~~ 405 (499)
| .....+|.+.|++..|++.|..+.+
T Consensus 301 ~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k 333 (517)
T PF12569_consen 301 DMQCMWFETECAEAYLRQGDYGLALKRFHAVLK 333 (517)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 1 4556788899999998887776654
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.01 E-value=1.5e-05 Score=73.95 Aligned_cols=366 Identities=11% Similarity=0.064 Sum_probs=175.3
Q ss_pred hHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHHHcCCCcccH--HHHHHHHHHHHHh----
Q 036198 95 EKIAFRFFMWAGHQDNYAHEPLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPV--DVLLMILKQYTEK---- 168 (499)
Q Consensus 95 ~~~a~~~f~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~--~~~~~~l~~~~~~---- 168 (499)
...|..+|+.+.... .-+...|-.-+..=. ++++...|..++++....-+. ++. .-+..+-......
T Consensus 89 ~~RARSv~ERALdvd--~r~itLWlkYae~Em----knk~vNhARNv~dRAvt~lPR-VdqlWyKY~ymEE~LgNi~gaR 161 (677)
T KOG1915|consen 89 IQRARSVFERALDVD--YRNITLWLKYAEFEM----KNKQVNHARNVWDRAVTILPR-VDQLWYKYIYMEEMLGNIAGAR 161 (677)
T ss_pred HHHHHHHHHHHHhcc--cccchHHHHHHHHHH----hhhhHhHHHHHHHHHHHhcch-HHHHHHHHHHHHHHhcccHHHH
Confidence 356778887764332 224455555555555 788888888888887655321 110 0011000000000
Q ss_pred ----hhcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHhhcCCCCChhhHHHH------------HHHHHHHHHHc-CC-
Q 036198 169 ----IKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNIL------------GMQTLEEMIQM-GH- 230 (499)
Q Consensus 169 ----~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~~~~~l------------a~~~~~~m~~~-g~- 230 (499)
.-...+|+..+|++.|+.=.+....+.|..+|++..- +.|++.+|--. +..+++...+. |-
T Consensus 162 qiferW~~w~P~eqaW~sfI~fElRykeieraR~IYerfV~-~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d 240 (677)
T KOG1915|consen 162 QIFERWMEWEPDEQAWLSFIKFELRYKEIERARSIYERFVL-VHPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDD 240 (677)
T ss_pred HHHHHHHcCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhe-ecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhH
Confidence 1124578888888888888888888888888887654 12444444322 33333333221 10
Q ss_pred CCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHH--------HHHHH
Q 036198 231 APDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPT--AKTYAIMIVALVQNDRMEECFSLL--------GHMIN 300 (499)
Q Consensus 231 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~p~--~~~~~~ll~~~~~~~~~~~a~~~~--------~~m~~ 300 (499)
.-+...|.+....=.++..++.|.-+|+-..+.- +.+ ...|......=-+-|+.....+.. +.+.+
T Consensus 241 ~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~----pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~ 316 (677)
T KOG1915|consen 241 EEAEILFVAFAEFEERQKEYERARFIYKYALDHI----PKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVS 316 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----CcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHH
Confidence 0011122222222223344444444444444432 111 233333333333344433332221 22222
Q ss_pred cCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH--hhHHHHH----H----HHHHcCCHHHHHHHHHHHHH
Q 036198 301 SGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDI--VTYNCFL----K----VLCDNKNGDEALRLYGRMIE 370 (499)
Q Consensus 301 ~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~--~~~~~li----~----~~~~~g~~~~a~~~~~~m~~ 370 (499)
.+ +-|-.+|--.++.--..|+.+...++|+..+.. ++|-. ..|.-.| + .=....+.+.+.++|+...+
T Consensus 317 ~n-p~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~ 394 (677)
T KOG1915|consen 317 KN-PYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLD 394 (677)
T ss_pred hC-CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 21 334444444455555556666666666655543 22211 0111111 1 11234555555666655555
Q ss_pred CCCCcChhhHHHHHHHH----HhcCCchHHHHHHHHHhHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC
Q 036198 371 VGCWPSVQTYNMLISMY----FELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLP 446 (499)
Q Consensus 371 ~~~~~~~~~~~~li~~~----~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~ 446 (499)
. ++-...||.-+--.| .++.++..|.+++.... |..|-..+|...|..=.+.+.++....++++.++-+.. +
T Consensus 395 l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI--G~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~Pe-~ 470 (677)
T KOG1915|consen 395 L-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI--GKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFSPE-N 470 (677)
T ss_pred h-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh--ccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcChH-h
Confidence 1 212223443332222 24455566666555543 33566666666666666666666666666666665532 4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcC
Q 036198 447 YRKFDSYLMQLSVIGDLGAIHKLSDHMRKFYN 478 (499)
Q Consensus 447 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~ 478 (499)
-.+|......-...|+.+.|..+|+-......
T Consensus 471 c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ 502 (677)
T KOG1915|consen 471 CYAWSKYAELETSLGDTDRARAIFELAISQPA 502 (677)
T ss_pred hHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcc
Confidence 55555555555556666666666666665543
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=98.95 E-value=1.7e-06 Score=79.99 Aligned_cols=221 Identities=10% Similarity=-0.039 Sum_probs=159.2
Q ss_pred CCHhHHHHHHHHHHHcCCCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHH
Q 036198 248 RMVTEAADLFEFMRTKGSTISSPT--AKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEE 325 (499)
Q Consensus 248 g~~~~a~~~~~~m~~~~~~~~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~ 325 (499)
+..+.++.-+.++..... ..|+ ...|..+...+...|+.++|...|++..+.. +.+...|+.+...+...|++++
T Consensus 40 ~~~e~~i~~~~~~l~~~~--~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~ 116 (296)
T PRK11189 40 LQQEVILARLNQILASRD--LTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDA 116 (296)
T ss_pred hHHHHHHHHHHHHHcccc--CCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHH
Confidence 467788888888876542 2222 4568888888999999999999999998874 4567889999999999999999
Q ss_pred HHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcChhhHHHHHHHHHhcCCchHHHHHHHHHhH
Q 036198 326 AYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDK 405 (499)
Q Consensus 326 a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 405 (499)
|.+.|+...+.... +..+|..+..++...|++++|.+.|+...+.. |+..........+...++.++|.+.+.....
T Consensus 117 A~~~~~~Al~l~P~-~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~--P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~ 193 (296)
T PRK11189 117 AYEAFDSVLELDPT-YNYAYLNRGIALYYGGRYELAQDDLLAFYQDD--PNDPYRALWLYLAESKLDPKQAKENLKQRYE 193 (296)
T ss_pred HHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHccCCHHHHHHHHHHHHh
Confidence 99999999886433 46778888888999999999999999998754 4433222222334456789999999976554
Q ss_pred CCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCC---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCh
Q 036198 406 RGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNK---GLK---LPYRKFDSYLMQLSVIGDLGAIHKLSDHMRKFYNP 479 (499)
Q Consensus 406 ~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~---~~~---p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~ 479 (499)
.. .|+...+ .+.. ...|+..++ +.+..+.+. .+. .....|..+...+.+.|++++|...|++..+..++
T Consensus 194 ~~-~~~~~~~-~~~~--~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~ 268 (296)
T PRK11189 194 KL-DKEQWGW-NIVE--FYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVY 268 (296)
T ss_pred hC-CccccHH-HHHH--HHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCc
Confidence 32 3332222 2222 234555443 344444422 111 13458889999999999999999999999988753
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.94 E-value=3.5e-05 Score=74.19 Aligned_cols=129 Identities=15% Similarity=0.120 Sum_probs=76.6
Q ss_pred HHHHHhhCCCCCCHHHHHHHHHcc--CCChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhcchhhhhhHHHHHHHHHHH
Q 036198 68 MEKALDSLGVPLTTDSVVGVLQRF--QFEEKIAFRFFMWAGHQDNYAHEPLAYNLMIDILSSTKYKAKQFRLVCSMLDYM 145 (499)
Q Consensus 68 ~~~al~~~~~~~~~~~~~~~l~~~--~~~~~~a~~~f~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m 145 (499)
++.||..+-+.-+..++.-.+.-+ +.-|..+..+++.-.+ .++..-+--|..++ +.+++++|.+.+...
T Consensus 125 fdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk-----~~P~~~eeyie~L~----~~d~~~eaa~~la~v 195 (835)
T KOG2047|consen 125 FDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLK-----VAPEAREEYIEYLA----KSDRLDEAAQRLATV 195 (835)
T ss_pred HHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHh-----cCHHHHHHHHHHHH----hccchHHHHHHHHHh
Confidence 344555554444443333333222 2334566777765432 35566788888899 899999999999887
Q ss_pred HHcCCC-----cccHHHHHHHHHHHHHh------------hhc--CCCCCH--HHHHHHHHHHHhCCChHHHHHHHHHhh
Q 036198 146 KRNNKV-----FVPVDVLLMILKQYTEK------------IKV--KTQPEI--NALNLLLDALCKCGLVDYAETICKRVK 204 (499)
Q Consensus 146 ~~~~~~-----~~~~~~~~~~l~~~~~~------------~~~--~~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~m~ 204 (499)
...... +.....+..+-....+. .+. +.-+|. ..|++|.+.|.+.|.+++|..+|++..
T Consensus 196 ln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai 275 (835)
T KOG2047|consen 196 LNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADYYIRSGLFEKARDVYEEAI 275 (835)
T ss_pred cCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 765421 11111222222222211 122 223443 368999999999999999999999865
Q ss_pred c
Q 036198 205 N 205 (499)
Q Consensus 205 ~ 205 (499)
.
T Consensus 276 ~ 276 (835)
T KOG2047|consen 276 Q 276 (835)
T ss_pred H
Confidence 5
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.94 E-value=2.8e-06 Score=80.36 Aligned_cols=271 Identities=13% Similarity=0.078 Sum_probs=190.7
Q ss_pred hhhhHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHhhcCCCCC
Q 036198 131 KAKQFRLVCSMLDYMKRNNKVFVPVDVLLMILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPN 210 (499)
Q Consensus 131 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~ 210 (499)
..++|.+..++.+...+.. ++....+..-|..+...|+..+-..+=.++.+.
T Consensus 256 ~~c~f~~c~kit~~lle~d------------------------pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~---- 307 (611)
T KOG1173|consen 256 YGCRFKECLKITEELLEKD------------------------PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL---- 307 (611)
T ss_pred HcChHHHHHHHhHHHHhhC------------------------CCCcchHHHHHHHHHHhcccchHHHHHHHHHHh----
Confidence 6677777777777766654 345555555566666777666655555555442
Q ss_pred hhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHH
Q 036198 211 ANTYNILGMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEE 290 (499)
Q Consensus 211 ~~~~~~la~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~ 290 (499)
.+-.+.+|-++.--|...|+..+|.+.|.+....+. .=...|-.....++-.+.-++
T Consensus 308 -------------------yP~~a~sW~aVg~YYl~i~k~seARry~SKat~lD~----~fgpaWl~fghsfa~e~EhdQ 364 (611)
T KOG1173|consen 308 -------------------YPSKALSWFAVGCYYLMIGKYSEARRYFSKATTLDP----TFGPAWLAFGHSFAGEGEHDQ 364 (611)
T ss_pred -------------------CCCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCc----cccHHHHHHhHHhhhcchHHH
Confidence 333567777787777778899999999988766542 235678888888888888888
Q ss_pred HHHHHHHHHHc--CCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHH
Q 036198 291 CFSLLGHMINS--GCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRM 368 (499)
Q Consensus 291 a~~~~~~m~~~--~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m 368 (499)
|...+....+. |.. -+..| +---|.+.+..+.|.++|.+..... +.|+...+-+.-.....+.+.+|..+|+..
T Consensus 365 AmaaY~tAarl~~G~h-lP~LY--lgmey~~t~n~kLAe~Ff~~A~ai~-P~Dplv~~Elgvvay~~~~y~~A~~~f~~~ 440 (611)
T KOG1173|consen 365 AMAAYFTAARLMPGCH-LPSLY--LGMEYMRTNNLKLAEKFFKQALAIA-PSDPLVLHELGVVAYTYEEYPEALKYFQKA 440 (611)
T ss_pred HHHHHHHHHHhccCCc-chHHH--HHHHHHHhccHHHHHHHHHHHHhcC-CCcchhhhhhhheeehHhhhHHHHHHHHHH
Confidence 88888777654 211 12222 2334677888889999988877663 347777777777777788888998888876
Q ss_pred HHC----C-CC-cChhhHHHHHHHHHhcCCchHHHHHHHHHhHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC
Q 036198 369 IEV----G-CW-PSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKG 442 (499)
Q Consensus 369 ~~~----~-~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 442 (499)
... + -+ .-..+++.|..+|.+.+.+++|+..++...... +-+..++..+.-.|...|+++.|.+.|.+.+.
T Consensus 441 l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~-~k~~~~~asig~iy~llgnld~Aid~fhKaL~-- 517 (611)
T KOG1173|consen 441 LEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLS-PKDASTHASIGYIYHLLGNLDKAIDHFHKALA-- 517 (611)
T ss_pred HHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcC-CCchhHHHHHHHHHHHhcChHHHHHHHHHHHh--
Confidence 521 1 01 134567888888999999999999998887652 44777888888888889999999999988764
Q ss_pred CCCCHHHHHHHHHHHHh
Q 036198 443 LKLPYRKFDSYLMQLSV 459 (499)
Q Consensus 443 ~~p~~~~~~~ll~~~~~ 459 (499)
+.|+..+...++..+..
T Consensus 518 l~p~n~~~~~lL~~aie 534 (611)
T KOG1173|consen 518 LKPDNIFISELLKLAIE 534 (611)
T ss_pred cCCccHHHHHHHHHHHH
Confidence 45777777777665543
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.92 E-value=6.8e-05 Score=72.46 Aligned_cols=230 Identities=11% Similarity=0.033 Sum_probs=100.3
Q ss_pred HHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHhHHHHH
Q 036198 235 FTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVL 314 (499)
Q Consensus 235 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll 314 (499)
..|......=-..|..+....+|++..... +-....|-.....+-..|+...|..++....+.. +-+...|-.-+
T Consensus 551 slWlra~~~ek~hgt~Esl~Allqkav~~~----pkae~lwlM~ake~w~agdv~~ar~il~~af~~~-pnseeiwlaav 625 (913)
T KOG0495|consen 551 SLWLRAAMFEKSHGTRESLEALLQKAVEQC----PKAEILWLMYAKEKWKAGDVPAARVILDQAFEAN-PNSEEIWLAAV 625 (913)
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHHhC----CcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhC-CCcHHHHHHHH
Confidence 333333333334444444444444444432 2223333333444444455555555554444432 12334444444
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcChh-hHHHHHHHHHhcCCc
Q 036198 315 EGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQ-TYNMLISMYFELGEP 393 (499)
Q Consensus 315 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~-~~~~li~~~~~~~~~ 393 (499)
+....+.+++.|..+|.+.... .|+...|.--+..---.++.++|.+++++..+. .|+.. .|-.+-+.+-+.+++
T Consensus 626 Kle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~--fp~f~Kl~lmlGQi~e~~~~i 701 (913)
T KOG0495|consen 626 KLEFENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEALRLLEEALKS--FPDFHKLWLMLGQIEEQMENI 701 (913)
T ss_pred HHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh--CCchHHHHHHHhHHHHHHHHH
Confidence 4444555555555555444332 233334333333333344555555555444432 23322 333444444444444
Q ss_pred hHHHHHHHHHhHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 036198 394 DGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHM 473 (499)
Q Consensus 394 ~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m 473 (499)
+.|.+.|..-.+. ++.....|-.+...=-+.|.+-.|..++++..-++.+ +...|-..|+.-.+.|+.+.|..+..+.
T Consensus 702 e~aR~aY~~G~k~-cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk-~~~lwle~Ir~ElR~gn~~~a~~lmakA 779 (913)
T KOG0495|consen 702 EMAREAYLQGTKK-CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPK-NALLWLESIRMELRAGNKEQAELLMAKA 779 (913)
T ss_pred HHHHHHHHhcccc-CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCC-cchhHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4444444433322 1112223333333333444555555555555444432 4445555555555555555555554444
Q ss_pred Hh
Q 036198 474 RK 475 (499)
Q Consensus 474 ~~ 475 (499)
.+
T Consensus 780 LQ 781 (913)
T KOG0495|consen 780 LQ 781 (913)
T ss_pred HH
Confidence 44
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.92 E-value=4.3e-05 Score=73.61 Aligned_cols=294 Identities=14% Similarity=0.151 Sum_probs=177.3
Q ss_pred HHHHccCCChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHHHcCCCcccHHHHHHHHHHH
Q 036198 86 GVLQRFQFEEKIAFRFFMWAGHQDNYAHEPLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLMILKQY 165 (499)
Q Consensus 86 ~~l~~~~~~~~~a~~~f~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~l~~~ 165 (499)
+.+..++..|+.=+.+...++.+..+..+..+|+.-+.++= ..+.+....++-...+...-| .+-..+.+.|
T Consensus 93 r~lv~mHkmpRIwl~Ylq~l~~Q~~iT~tR~tfdrALraLp-----vtqH~rIW~lyl~Fv~~~~lP---ets~rvyrRY 164 (835)
T KOG2047|consen 93 RCLVFMHKMPRIWLDYLQFLIKQGLITRTRRTFDRALRALP-----VTQHDRIWDLYLKFVESHGLP---ETSIRVYRRY 164 (835)
T ss_pred HHHHHHhcCCHHHHHHHHHHHhcchHHHHHHHHHHHHHhCc-----hHhhccchHHHHHHHHhCCCh---HHHHHHHHHH
Confidence 33344567777778888888888888888888988888876 345566666666666655322 3444455555
Q ss_pred HHhhhcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHhhcC-------CCCChhhHHHH---------------HHHHHH
Q 036198 166 TEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNK-------VKPNANTYNIL---------------GMQTLE 223 (499)
Q Consensus 166 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-------~~p~~~~~~~l---------------a~~~~~ 223 (499)
. +.++..-+..|..+++.+++++|.+.+..+... .+.+...|..+ +..++.
T Consensus 165 L-------k~~P~~~eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR 237 (835)
T KOG2047|consen 165 L-------KVAPEAREEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIR 237 (835)
T ss_pred H-------hcCHHHHHHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHH
Confidence 4 335556888899999999999999999988652 45555566655 333443
Q ss_pred HHHHcCCCCCH--HHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcC---------------
Q 036198 224 EMIQMGHAPDN--FTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQND--------------- 286 (499)
Q Consensus 224 ~m~~~g~~p~~--~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~--------------- 286 (499)
.++.. -+|. ..|++|.+-|.+.|.+++|.++|++....- .+..-|..+.++|+.-.
T Consensus 238 ~gi~r--ftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v-----~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~ 310 (835)
T KOG2047|consen 238 GGIRR--FTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQTV-----MTVRDFTQIFDAYAQFEESCVAAKMELADEES 310 (835)
T ss_pred hhccc--CcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhh-----eehhhHHHHHHHHHHHHHHHHHHHHhhhhhcc
Confidence 33322 2343 368999999999999999999999887753 34555555555554421
Q ss_pred -------CHHHHHHHHHHHHHcCC-----------CcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC------H
Q 036198 287 -------RMEECFSLLGHMINSGC-----------LPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPD------I 342 (499)
Q Consensus 287 -------~~~~a~~~~~~m~~~~~-----------~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~------~ 342 (499)
+++-...-|+.+...+. +-+...|..- .-+..|+..+-...+.+..+. +.|. .
T Consensus 311 ~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kR--V~l~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~ 387 (835)
T KOG2047|consen 311 GNEEDDVDLELHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKR--VKLYEGNAAEQINTYTEAVKT-VDPKKAVGSPG 387 (835)
T ss_pred cChhhhhhHHHHHHHHHHHHhccchHHHHHHHhcCCccHHHHHhh--hhhhcCChHHHHHHHHHHHHc-cCcccCCCChh
Confidence 12233333444333210 1111122111 112234555555566655443 2221 2
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcC---hhhHHHHHHHHHhcCCchHHHHHHHHHh
Q 036198 343 VTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPS---VQTYNMLISMYFELGEPDGAFETWHEMD 404 (499)
Q Consensus 343 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~---~~~~~~li~~~~~~~~~~~a~~~~~~m~ 404 (499)
..|..+...|-..|+++.|..+|++..+-..+-- ..+|..-...=.+..+++.|.++.+...
T Consensus 388 ~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~ 452 (835)
T KOG2047|consen 388 TLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRAT 452 (835)
T ss_pred hHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhh
Confidence 3466677777777888888888777766433211 3345544455555666777777666543
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=98.91 E-value=1.2e-05 Score=77.01 Aligned_cols=225 Identities=10% Similarity=-0.001 Sum_probs=138.6
Q ss_pred cCCHhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHH
Q 036198 247 ARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEA 326 (499)
Q Consensus 247 ~g~~~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a 326 (499)
.+..+.+.+.++..... .+........+...+...|++++|...+++..+.. +.+...+..+...+...|++++|
T Consensus 93 ~~~~~~~~~~l~~~~~~----~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g~~~eA 167 (355)
T cd05804 93 SGMRDHVARVLPLWAPE----NPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQGRFKEG 167 (355)
T ss_pred ccCchhHHHHHhccCcC----CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHH
Confidence 44555555555441111 22334455566678889999999999999999875 44566778888899999999999
Q ss_pred HHHHHHHHhCCC-CCCH--hhHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-CcChhhH-H--HHHHHHHhcCCchHHHHH
Q 036198 327 YKFLEEMGNKGY-PPDI--VTYNCFLKVLCDNKNGDEALRLYGRMIEVGC-WPSVQTY-N--MLISMYFELGEPDGAFET 399 (499)
Q Consensus 327 ~~~~~~m~~~~~-~p~~--~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~-~~~~~~~-~--~li~~~~~~~~~~~a~~~ 399 (499)
...+++...... .|+. ..|..+...+...|++++|..++++...... .+..... + .++.-+...|..+.+.+.
T Consensus 168 ~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w 247 (355)
T cd05804 168 IAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRW 247 (355)
T ss_pred HHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHH
Confidence 999998876532 2232 3455778888999999999999999864332 1112111 1 233333444544333333
Q ss_pred --H-HHHhHCCC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCC------CCHHHHHHHH--HHHHhcCCHHHHH
Q 036198 400 --W-HEMDKRGC-AQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLK------LPYRKFDSYL--MQLSVIGDLGAIH 467 (499)
Q Consensus 400 --~-~~m~~~~~-~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~------p~~~~~~~ll--~~~~~~g~~~~a~ 467 (499)
+ ..-..... ............++...|+.++|..+++.+...... ....+-..++ .++...|+.++|.
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~ 327 (355)
T cd05804 248 EDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATAL 327 (355)
T ss_pred HHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHH
Confidence 1 11111100 111122225666777899999999999988753221 1111222233 4456889999999
Q ss_pred HHHHHHHhh
Q 036198 468 KLSDHMRKF 476 (499)
Q Consensus 468 ~~~~~m~~~ 476 (499)
+.+......
T Consensus 328 ~~L~~al~~ 336 (355)
T cd05804 328 ELLGPVRDD 336 (355)
T ss_pred HHHHHHHHH
Confidence 988877653
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.91 E-value=3.6e-05 Score=73.11 Aligned_cols=277 Identities=9% Similarity=-0.059 Sum_probs=214.0
Q ss_pred CCCCHHHHHHHHHHHHhCCChHHHHHHHHHhhcCCCCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhH
Q 036198 173 TQPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTE 252 (499)
Q Consensus 173 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~~~~~la~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~ 252 (499)
..-+......-.+-+...+++.+..++++.+.+. .++....+..-|.++.+.|+..+
T Consensus 240 l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~-----------------------dpfh~~~~~~~ia~l~el~~~n~ 296 (611)
T KOG1173|consen 240 LAENLDLLAEKADRLYYGCRFKECLKITEELLEK-----------------------DPFHLPCLPLHIACLYELGKSNK 296 (611)
T ss_pred hhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhh-----------------------CCCCcchHHHHHHHHHHhcccch
Confidence 3445566666677777788999999988887764 23344455556678999999888
Q ss_pred HHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHH
Q 036198 253 AADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEE 332 (499)
Q Consensus 253 a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~ 332 (499)
-..+=.++.+.. +-...+|-++.-.|...|+.++|.+.|.+..... +.-...|-...+.|+-.|..|+|...+..
T Consensus 297 Lf~lsh~LV~~y----P~~a~sW~aVg~YYl~i~k~seARry~SKat~lD-~~fgpaWl~fghsfa~e~EhdQAmaaY~t 371 (611)
T KOG1173|consen 297 LFLLSHKLVDLY----PSKALSWFAVGCYYLMIGKYSEARRYFSKATTLD-PTFGPAWLAFGHSFAGEGEHDQAMAAYFT 371 (611)
T ss_pred HHHHHHHHHHhC----CCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcC-ccccHHHHHHhHHhhhcchHHHHHHHHHH
Confidence 888888888875 4567899999999999999999999999887553 12245677788999999999999998877
Q ss_pred HHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcChhhHHHHHHHHHhcCCchHHHHHHHHHhHC--CCC-
Q 036198 333 MGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKR--GCA- 409 (499)
Q Consensus 333 m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~--~~~- 409 (499)
.-+.- +-....+--+..-|.+.++.+.|.+.|.+..... +.|+...+-+.-.....+.+.+|...|+..... .+.
T Consensus 372 Aarl~-~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai~-P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~ 449 (611)
T KOG1173|consen 372 AARLM-PGCHLPSLYLGMEYMRTNNLKLAEKFFKQALAIA-PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLN 449 (611)
T ss_pred HHHhc-cCCcchHHHHHHHHHHhccHHHHHHHHHHHHhcC-CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccc
Confidence 65541 1122233345566888999999999999987643 345677787777777889999999999987632 111
Q ss_pred ---CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcChh
Q 036198 410 ---QDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHMRKFYNPV 480 (499)
Q Consensus 410 ---p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~ 480 (499)
--..+++.|..+|.+.+.+++|+..+++.+.... -+..++.++.-.|...|+++.|.+.|.+..-..+..
T Consensus 450 e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~-k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n 522 (611)
T KOG1173|consen 450 EKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSP-KDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDN 522 (611)
T ss_pred cccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCC-CchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCcc
Confidence 1345688888999999999999999999998864 488999999999999999999999999987766554
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.88 E-value=5.4e-05 Score=69.14 Aligned_cols=281 Identities=12% Similarity=-0.003 Sum_probs=183.1
Q ss_pred CCCCCHHHHHHHHHHHHhCCChHHHHHHHHHhhcCCCCChhhHHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCCH
Q 036198 172 KTQPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQTLEEMIQMGHAPDN-FTYNTAIDTFCKARMV 250 (499)
Q Consensus 172 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~~~~~la~~~~~~m~~~g~~p~~-~~~~~li~~~~~~g~~ 250 (499)
.++-|+.....+...+...|+.++|...|++... +.|+. .........+.+.|+.
T Consensus 227 ~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~------------------------~dpy~i~~MD~Ya~LL~~eg~~ 282 (564)
T KOG1174|consen 227 TLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLC------------------------ANPDNVEAMDLYAVLLGQEGGC 282 (564)
T ss_pred cCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhh------------------------CChhhhhhHHHHHHHHHhccCH
Confidence 3445566677777777777777777777776543 11211 1112223334566677
Q ss_pred hHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHHHHHH
Q 036198 251 TEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFL 330 (499)
Q Consensus 251 ~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~ 330 (499)
++...+...+.... .-+...|..-.......++++.|+.+-++.++.. +-+...|-.=-..+...|++++|.-.|
T Consensus 283 e~~~~L~~~Lf~~~----~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~~R~~~A~IaF 357 (564)
T KOG1174|consen 283 EQDSALMDYLFAKV----KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIALERHTQAVIAF 357 (564)
T ss_pred hhHHHHHHHHHhhh----hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhccchHHHHHHH
Confidence 77666666665543 2344455555555556677777777777766543 223333433335667788888888888
Q ss_pred HHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcChhhHHHHH-HHHH-hcCCchHHHHHHHHHhHCCC
Q 036198 331 EEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLI-SMYF-ELGEPDGAFETWHEMDKRGC 408 (499)
Q Consensus 331 ~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li-~~~~-~~~~~~~a~~~~~~m~~~~~ 408 (499)
+..+... +-+...|.-|+..|...|.+.+|..+-+...+. +..+..+.+.+- ..|. ....-++|.++++.-...
T Consensus 358 R~Aq~La-p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~-- 433 (564)
T KOG1174|consen 358 RTAQMLA-PYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKI-- 433 (564)
T ss_pred HHHHhcc-hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhcc--
Confidence 8876653 236788888999988888888888777665543 223455555442 2222 223456788887776553
Q ss_pred CCCH-HHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcChhHHHHHHH
Q 036198 409 AQDV-DTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHMRKFYNPVIARRLAL 487 (499)
Q Consensus 409 ~p~~-~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ 487 (499)
.|+- ...+.+...+...|+.+.+..+++..+.. .||....+.|.+.+...+.+.+|.+.|....+..|..-...-++
T Consensus 434 ~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~--~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~sl~Gl 511 (564)
T KOG1174|consen 434 NPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLII--FPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSKRTLRGL 511 (564)
T ss_pred CCccHHHHHHHHHHHHhhCccchHHHHHHHHHhh--ccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccchHHHHHH
Confidence 4543 35566677788889999999999887765 47888888999999999999999999998888877765544443
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.87 E-value=1.2e-07 Score=86.39 Aligned_cols=232 Identities=13% Similarity=0.085 Sum_probs=160.7
Q ss_pred CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc-CHHhHH
Q 036198 233 DNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLP-DVSTYK 311 (499)
Q Consensus 233 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~-~~~~~~ 311 (499)
+......+.+++...|+.+.++. ++... ..|.......+...+...++-+.+..-+.+....+..+ +.....
T Consensus 34 ~~e~~~~~~Rs~iAlg~~~~vl~---ei~~~----~~~~l~av~~la~y~~~~~~~e~~l~~l~~~~~~~~~~~~~~~~~ 106 (290)
T PF04733_consen 34 KLERDFYQYRSYIALGQYDSVLS---EIKKS----SSPELQAVRLLAEYLSSPSDKESALEELKELLADQAGESNEIVQL 106 (290)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHH---HS-TT----SSCCCHHHHHHHHHHCTSTTHHCHHHHHHHCCCTS---CHHHHHH
T ss_pred HHHHHHHHHHHHHHcCChhHHHH---HhccC----CChhHHHHHHHHHHHhCccchHHHHHHHHHHHHhccccccHHHHH
Confidence 34455667888999998775543 33232 35666666555555544455666666665554443332 333333
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcChhhHHHHHHHHHh--
Q 036198 312 EVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFE-- 389 (499)
Q Consensus 312 ~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~-- 389 (499)
.....+...|++++|++++..- .+.......+..|.+.++++.|.+.++.|.+.+ .| .+...+..++..
T Consensus 107 ~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~--eD-~~l~qLa~awv~l~ 177 (290)
T PF04733_consen 107 LAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQID--ED-SILTQLAEAWVNLA 177 (290)
T ss_dssp HHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCS--CC-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--Cc-HHHHHHHHHHHHHH
Confidence 3335667789999999988653 367777888999999999999999999998753 33 444445555443
Q ss_pred --cCCchHHHHHHHHHhHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH-HHH
Q 036198 390 --LGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDL-GAI 466 (499)
Q Consensus 390 --~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~-~~a 466 (499)
.+.+.+|..+|+++.+. ..+++.+.+.+..+....|++++|.+++.+..+.+.. ++.++..++-+....|+. +.+
T Consensus 178 ~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~-~~d~LaNliv~~~~~gk~~~~~ 255 (290)
T PF04733_consen 178 TGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPN-DPDTLANLIVCSLHLGKPTEAA 255 (290)
T ss_dssp HTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CC-HHHHHHHHHHHHHHTT-TCHHH
T ss_pred hCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccC-CHHHHHHHHHHHHHhCCChhHH
Confidence 34799999999998765 5678889999999999999999999999998876643 677888888888888888 778
Q ss_pred HHHHHHHHhhcChhHH
Q 036198 467 HKLSDHMRKFYNPVIA 482 (499)
Q Consensus 467 ~~~~~~m~~~~~~~~~ 482 (499)
.+++.++++.+|.+++
T Consensus 256 ~~~l~qL~~~~p~h~~ 271 (290)
T PF04733_consen 256 ERYLSQLKQSNPNHPL 271 (290)
T ss_dssp HHHHHHCHHHTTTSHH
T ss_pred HHHHHHHHHhCCCChH
Confidence 8999999988776554
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.86 E-value=3.5e-05 Score=75.80 Aligned_cols=361 Identities=14% Similarity=0.129 Sum_probs=229.4
Q ss_pred CCCCHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHHh-----------hhcCC---CCC
Q 036198 111 YAHEPLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLMILKQYTEK-----------IKVKT---QPE 176 (499)
Q Consensus 111 ~~~~~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~l~~~~~~-----------~~~~~---~~~ 176 (499)
+.-+...|..+--++. ++|+++.+.+.|++..... ....+.+...--.+... ...+. +++
T Consensus 319 ~qnd~ai~d~Lt~al~----~~g~f~~lae~fE~~~~~~--~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~ 392 (799)
T KOG4162|consen 319 FQNDAAIFDHLTFALS----RCGQFEVLAEQFEQALPFS--FGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSD 392 (799)
T ss_pred hcchHHHHHHHHHHHH----HHHHHHHHHHHHHHHhHhh--hhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCc
Confidence 3348888999988888 9999999999999865433 22222222222111111 22222 234
Q ss_pred HHHHHHHHHHHHh-CCChHHHHHHHHHhhc-------CCCCChhhHHHH---------------------HHHHHHHHHH
Q 036198 177 INALNLLLDALCK-CGLVDYAETICKRVKN-------KVKPNANTYNIL---------------------GMQTLEEMIQ 227 (499)
Q Consensus 177 ~~~~~~li~~~~~-~g~~~~A~~~~~~m~~-------~~~p~~~~~~~l---------------------a~~~~~~m~~ 227 (499)
...+-..-..|.+ .|.+++++..-.+... .++|-..-+..+ +++.+++..+
T Consensus 393 ~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~ 472 (799)
T KOG4162|consen 393 ISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQ 472 (799)
T ss_pred chHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHh
Confidence 4455444445543 3666666555444332 244444333333 7888888877
Q ss_pred cCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCC--
Q 036198 228 MGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINS-GCL-- 304 (499)
Q Consensus 228 ~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~-~~~-- 304 (499)
.+.. |+.....+---|+..++++.|.+..++..+-+ ...+...|..+.-.+...+++.+|+.+.+...+. |..
T Consensus 473 ~d~~-dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~---~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~ 548 (799)
T KOG4162|consen 473 FDPT-DPLVIFYLALQYAEQRQLTSALDYAREALALN---RGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHV 548 (799)
T ss_pred cCCC-CchHHHHHHHHHHHHHhHHHHHHHHHHHHHhc---CCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhh
Confidence 6554 33444445566777889999999999999885 3568899999999999999999999999877653 210
Q ss_pred ----------------cCHHhHHHHHHHHH------hcC-----------------CHHHHHHHHHHH--------HhCC
Q 036198 305 ----------------PDVSTYKEVLEGMC------LAG-----------------KVEEAYKFLEEM--------GNKG 337 (499)
Q Consensus 305 ----------------~~~~~~~~ll~~~~------~~g-----------------~~~~a~~~~~~m--------~~~~ 337 (499)
-...|...++..+- ..+ +..+|.+....+ +..|
T Consensus 549 l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~ 628 (799)
T KOG4162|consen 549 LMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAG 628 (799)
T ss_pred hchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcc
Confidence 00111222222111 000 111111111000 0001
Q ss_pred ---------CC--CC------HhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcChhhHHHHHHHHHhcCCchHHHHHH
Q 036198 338 ---------YP--PD------IVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETW 400 (499)
Q Consensus 338 ---------~~--p~------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~ 400 (499)
.. |+ ...|......+.+.+..++|...+.+..... ......|......+...|.+++|.+.|
T Consensus 629 se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~-~l~~~~~~~~G~~~~~~~~~~EA~~af 707 (799)
T KOG4162|consen 629 SELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKID-PLSASVYYLRGLLLEVKGQLEEAKEAF 707 (799)
T ss_pred cccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc-hhhHHHHHHhhHHHHHHHhhHHHHHHH
Confidence 01 11 1234455667778888888888887776643 344566666667778889999999999
Q ss_pred HHHhHCCCCC-CHHHHHHHHHHHHhCCCHHHHHH--HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhc
Q 036198 401 HEMDKRGCAQ-DVDTYCVMIDGLFDCSKVEEACF--LLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHMRKFY 477 (499)
Q Consensus 401 ~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~--~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~ 477 (499)
...... .| ++.+..++...+.+.|+..-|.. ++.++.+.+. .+...|..+...+.+.|+.+.|.+.|....+..
T Consensus 708 ~~Al~l--dP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp-~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe 784 (799)
T KOG4162|consen 708 LVALAL--DPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDP-LNHEAWYYLGEVFKKLGDSKQAAECFQAALQLE 784 (799)
T ss_pred HHHHhc--CCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHccchHHHHHHHHHHHhhc
Confidence 987765 33 44577888888999898777776 9999999884 488999999999999999999999999988876
Q ss_pred ChhHHHHH
Q 036198 478 NPVIARRL 485 (499)
Q Consensus 478 ~~~~~~~~ 485 (499)
+..+...+
T Consensus 785 ~S~PV~pF 792 (799)
T KOG4162|consen 785 ESNPVLPF 792 (799)
T ss_pred cCCCcccc
Confidence 65554433
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.84 E-value=1e-05 Score=68.06 Aligned_cols=207 Identities=10% Similarity=-0.044 Sum_probs=170.9
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHH
Q 036198 236 TYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLE 315 (499)
Q Consensus 236 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~ 315 (499)
+...+.-.|...|+...|..-+++..+++ +-+..+|..+...|.+.|..+.|.+.|+...+.. +-+..+.|..-.
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~D----Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~ 111 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHD----PSYYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGA 111 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC----cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhH
Confidence 44567788999999999999999999986 4567899999999999999999999999999874 456778888999
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCC-CHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcChhhHHHHHHHHHhcCCch
Q 036198 316 GMCLAGKVEEAYKFLEEMGNKGYPP-DIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPD 394 (499)
Q Consensus 316 ~~~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~ 394 (499)
.+|..|++++|...|+.....-.-+ -..+|..+.-+..+.|+.+.|...|++..+... -...+.-.+.....+.|++.
T Consensus 112 FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp-~~~~~~l~~a~~~~~~~~y~ 190 (250)
T COG3063 112 FLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDP-QFPPALLELARLHYKAGDYA 190 (250)
T ss_pred HHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCc-CCChHHHHHHHHHHhcccch
Confidence 9999999999999999987762222 246788888888899999999999999988642 23457778888889999999
Q ss_pred HHHHHHHHHhHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 036198 395 GAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFD 451 (499)
Q Consensus 395 ~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~ 451 (499)
.|..+++.....+. ++..+....|+.--..|+.+.+-++=.++... -|...-|.
T Consensus 191 ~Ar~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~--fP~s~e~q 244 (250)
T COG3063 191 PARLYLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQRL--FPYSEEYQ 244 (250)
T ss_pred HHHHHHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCcHHHH
Confidence 99999999988765 88888888899888999998888776666554 24444443
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.80 E-value=1.7e-05 Score=72.23 Aligned_cols=275 Identities=9% Similarity=0.041 Sum_probs=190.8
Q ss_pred cCCCCCCCHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHHhhhcCCCCCHHHHHHHHHH
Q 036198 107 HQDNYAHEPLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLMILKQYTEKIKVKTQPEINALNLLLDA 186 (499)
Q Consensus 107 ~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~li~~ 186 (499)
....++-|+.....+.+.+. ..|+.+.|...|+.....++ -++.......-.
T Consensus 224 ~~~~lr~NvhLl~~lak~~~----~~Gdn~~a~~~Fe~~~~~dp------------------------y~i~~MD~Ya~L 275 (564)
T KOG1174|consen 224 DNTTLRCNEHLMMALGKCLY----YNGDYFQAEDIFSSTLCANP------------------------DNVEAMDLYAVL 275 (564)
T ss_pred hhccCCccHHHHHHHhhhhh----hhcCchHHHHHHHHHhhCCh------------------------hhhhhHHHHHHH
Confidence 34456668888888888888 89999999999998776552 111222222334
Q ss_pred HHhCCChHHHHHHHHHhhcCCCCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCC
Q 036198 187 LCKCGLVDYAETICKRVKNKVKPNANTYNILGMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGST 266 (499)
Q Consensus 187 ~~~~g~~~~A~~~~~~m~~~~~p~~~~~~~la~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~ 266 (499)
+.+.|+.+....+...+... ..-....|..-........+++.|+.+-++..+..
T Consensus 276 L~~eg~~e~~~~L~~~Lf~~-----------------------~~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~-- 330 (564)
T KOG1174|consen 276 LGQEGGCEQDSALMDYLFAK-----------------------VKYTASHWFVHAQLLYDEKKFERALNFVEKCIDSE-- 330 (564)
T ss_pred HHhccCHhhHHHHHHHHHhh-----------------------hhcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccC--
Confidence 56677888777776665432 01133344444555566778888888888887764
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHH
Q 036198 267 ISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYN 346 (499)
Q Consensus 267 ~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~ 346 (499)
+.+...|-.-...+...++.++|.-.|+..+... +-+...|..|++.|...|++.+|.-+-+...+. ++.+..+.+
T Consensus 331 --~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La-p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~Lt 406 (564)
T KOG1174|consen 331 --PRNHEALILKGRLLIALERHTQAVIAFRTAQMLA-PYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLT 406 (564)
T ss_pred --cccchHHHhccHHHHhccchHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhh
Confidence 3456666666677888889999998888887653 456788999999999999998888776654443 223444544
Q ss_pred HHH-HHHH-HcCCHHHHHHHHHHHHHCCCCcCh-hhHHHHHHHHHhcCCchHHHHHHHHHhHCCCCCCHHHHHHHHHHHH
Q 036198 347 CFL-KVLC-DNKNGDEALRLYGRMIEVGCWPSV-QTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLF 423 (499)
Q Consensus 347 ~li-~~~~-~~g~~~~a~~~~~~m~~~~~~~~~-~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~ 423 (499)
.+. ..+. ....-++|.++++.-... .|+- ...+.+...|...|..+++..+++.-... .||....+.|.+.+.
T Consensus 407 L~g~~V~~~dp~~rEKAKkf~ek~L~~--~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~--~~D~~LH~~Lgd~~~ 482 (564)
T KOG1174|consen 407 LFGTLVLFPDPRMREKAKKFAEKSLKI--NPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLII--FPDVNLHNHLGDIMR 482 (564)
T ss_pred hhcceeeccCchhHHHHHHHHHhhhcc--CCccHHHHHHHHHHHHhhCccchHHHHHHHHHhh--ccccHHHHHHHHHHH
Confidence 442 2222 233457788888776653 3553 35567777788888999999998887664 688888889989888
Q ss_pred hCCCHHHHHHHHHHHHHCC
Q 036198 424 DCSKVEEACFLLEEVVNKG 442 (499)
Q Consensus 424 ~~g~~~~a~~~~~~m~~~~ 442 (499)
..+.+.+|++.|...+..+
T Consensus 483 A~Ne~Q~am~~y~~ALr~d 501 (564)
T KOG1174|consen 483 AQNEPQKAMEYYYKALRQD 501 (564)
T ss_pred HhhhHHHHHHHHHHHHhcC
Confidence 8899999998888887765
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.79 E-value=1e-08 Score=59.65 Aligned_cols=34 Identities=32% Similarity=0.545 Sum_probs=32.0
Q ss_pred cCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHhh
Q 036198 171 VKTQPEINALNLLLDALCKCGLVDYAETICKRVK 204 (499)
Q Consensus 171 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 204 (499)
.|+.||..+||++|++||+.|++++|.++|++|+
T Consensus 1 ~G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 1 RGCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 3689999999999999999999999999999984
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=98.78 E-value=7.6e-05 Score=71.44 Aligned_cols=204 Identities=11% Similarity=-0.027 Sum_probs=131.7
Q ss_pred HHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CcCH--HhH
Q 036198 234 NFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGC-LPDV--STY 310 (499)
Q Consensus 234 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~-~~~~--~~~ 310 (499)
......+...+...|++++|.+.+++..+.. +.+...+..+...+...|++++|...+++..+..- .++. ..|
T Consensus 114 ~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~----p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~ 189 (355)
T cd05804 114 WYLLGMLAFGLEEAGQYDRAEEAARRALELN----PDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNW 189 (355)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC----CCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHH
Confidence 4455566778899999999999999999975 44577888899999999999999999999886532 1232 345
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCCHhhH-H--HHHHHHHHcCCHHHHHHH--HHHHHHCCCCcChhhH--HH
Q 036198 311 KEVLEGMCLAGKVEEAYKFLEEMGNKGY-PPDIVTY-N--CFLKVLCDNKNGDEALRL--YGRMIEVGCWPSVQTY--NM 382 (499)
Q Consensus 311 ~~ll~~~~~~g~~~~a~~~~~~m~~~~~-~p~~~~~-~--~li~~~~~~g~~~~a~~~--~~~m~~~~~~~~~~~~--~~ 382 (499)
..+...+...|++++|..++++...... .+..... + .++.-+...|..+.+.+. ...............+ ..
T Consensus 190 ~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~ 269 (355)
T cd05804 190 WHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLH 269 (355)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHH
Confidence 5678889999999999999999864432 1122111 1 223333344543333333 2111111111111122 35
Q ss_pred HHHHHHhcCCchHHHHHHHHHhHCCCCC---C---HHHHHHHHH--HHHhCCCHHHHHHHHHHHHHC
Q 036198 383 LISMYFELGEPDGAFETWHEMDKRGCAQ---D---VDTYCVMID--GLFDCSKVEEACFLLEEVVNK 441 (499)
Q Consensus 383 li~~~~~~~~~~~a~~~~~~m~~~~~~p---~---~~~~~~li~--~~~~~g~~~~a~~~~~~m~~~ 441 (499)
...++...|+.+.|..++..+......+ . ..+-..++. ++...|+.++|.+.+......
T Consensus 270 ~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~ 336 (355)
T cd05804 270 AALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDD 336 (355)
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 6667788899999999999986632220 1 111222333 445789999999999887654
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.76 E-value=1.1e-08 Score=59.53 Aligned_cols=33 Identities=55% Similarity=0.810 Sum_probs=26.3
Q ss_pred cCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHH
Q 036198 228 MGHAPDNFTYNTAIDTFCKARMVTEAADLFEFM 260 (499)
Q Consensus 228 ~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m 260 (499)
.|+.||..||+++|++||+.|++++|.++|++|
T Consensus 1 ~G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 1 RGCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 367788888888888888888888888888776
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.72 E-value=1.7e-05 Score=82.71 Aligned_cols=234 Identities=13% Similarity=0.121 Sum_probs=189.8
Q ss_pred CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCH
Q 036198 233 DNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPT-----AKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDV 307 (499)
Q Consensus 233 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~p~-----~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~ 307 (499)
+...|-..|......++.++|.+++++.+..- .+. .-.|.++++.-..-|.-+...++|++..+.. ..-
T Consensus 1457 SSi~WI~YMaf~LelsEiekAR~iaerAL~tI----N~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc--d~~ 1530 (1710)
T KOG1070|consen 1457 SSILWIRYMAFHLELSEIEKARKIAERALKTI----NFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC--DAY 1530 (1710)
T ss_pred cchHHHHHHHHHhhhhhhHHHHHHHHHHhhhC----CcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc--chH
Confidence 66788999999999999999999999988652 222 3467888888788888899999999998863 345
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcC---hhhHHHHH
Q 036198 308 STYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPS---VQTYNMLI 384 (499)
Q Consensus 308 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~---~~~~~~li 384 (499)
..|..|...|.+.++.++|.++++.|.+. +.-....|...+..+.++.+-+.|..++++..+. -|- .....-.+
T Consensus 1531 ~V~~~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~--lPk~eHv~~IskfA 1607 (1710)
T KOG1070|consen 1531 TVHLKLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKS--LPKQEHVEFISKFA 1607 (1710)
T ss_pred HHHHHHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhh--cchhhhHHHHHHHH
Confidence 67889999999999999999999999886 3347789999999999999999999999998874 233 33444555
Q ss_pred HHHHhcCCchHHHHHHHHHhHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCC
Q 036198 385 SMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLP--YRKFDSYLMQLSVIGD 462 (499)
Q Consensus 385 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~--~~~~~~ll~~~~~~g~ 462 (499)
..-.+.|+.+++..+|+.....- +--...|+..|+.=.++|+.+.+..+|++....++.|- ...|.-++..-...|+
T Consensus 1608 qLEFk~GDaeRGRtlfEgll~ay-PKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gd 1686 (1710)
T KOG1070|consen 1608 QLEFKYGDAERGRTLFEGLLSAY-PKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGD 1686 (1710)
T ss_pred HHHhhcCCchhhHHHHHHHHhhC-ccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCc
Confidence 55678899999999999887652 23567899999999999999999999999999988765 3477788877777888
Q ss_pred HHHHHHHHHHHHhh
Q 036198 463 LGAIHKLSDHMRKF 476 (499)
Q Consensus 463 ~~~a~~~~~~m~~~ 476 (499)
-+.++.+=.+..++
T Consensus 1687 e~~vE~VKarA~EY 1700 (1710)
T KOG1070|consen 1687 EKNVEYVKARAKEY 1700 (1710)
T ss_pred hhhHHHHHHHHHHH
Confidence 77776666665554
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.69 E-value=9.7e-06 Score=70.66 Aligned_cols=182 Identities=11% Similarity=0.136 Sum_probs=94.5
Q ss_pred HHHHHHHHhcchhhhhhHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhCCChHHHH
Q 036198 118 YNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLMILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAE 197 (499)
Q Consensus 118 ~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 197 (499)
+.+++-.+. +..+++.|++++..-.+.. +.+....+.|..+|....++..|-
T Consensus 13 ftaviy~lI----~d~ry~DaI~~l~s~~Er~------------------------p~~rAgLSlLgyCYY~~Q~f~~AA 64 (459)
T KOG4340|consen 13 FTAVVYRLI----RDARYADAIQLLGSELERS------------------------PRSRAGLSLLGYCYYRLQEFALAA 64 (459)
T ss_pred hHHHHHHHH----HHhhHHHHHHHHHHHHhcC------------------------ccchHHHHHHHHHHHHHHHHHHHH
Confidence 555666666 7888999999888776665 236677888888899999999999
Q ss_pred HHHHHhhcCCCCChhhHHHH-------------HHHHHHHHHHcCCCCCHHHHHHHHHH--HHhcCCHhHHHHHHHHHHH
Q 036198 198 TICKRVKNKVKPNANTYNIL-------------GMQTLEEMIQMGHAPDNFTYNTAIDT--FCKARMVTEAADLFEFMRT 262 (499)
Q Consensus 198 ~~~~~m~~~~~p~~~~~~~l-------------a~~~~~~m~~~g~~p~~~~~~~li~~--~~~~g~~~~a~~~~~~m~~ 262 (499)
..|+++... -|...-|... |+.+...|.+. |+...-..-+.+ .-..+++..+..+.++...
T Consensus 65 ~CYeQL~ql-~P~~~qYrlY~AQSLY~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~ 140 (459)
T KOG4340|consen 65 ECYEQLGQL-HPELEQYRLYQAQSLYKACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPS 140 (459)
T ss_pred HHHHHHHhh-ChHHHHHHHHHHHHHHHhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccC
Confidence 999988652 1222222111 23333322221 111111111111 1123444444444444432
Q ss_pred cCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 036198 263 KGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGY 338 (499)
Q Consensus 263 ~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~ 338 (499)
.+ +..+.+...-...+.|+++.|.+-|+...+-+---....|+..+ +..+.|+.+.|++...++.++|+
T Consensus 141 en------~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpllAYniAL-aHy~~~qyasALk~iSEIieRG~ 209 (459)
T KOG4340|consen 141 EN------EADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLAL-AHYSSRQYASALKHISEIIERGI 209 (459)
T ss_pred CC------ccchhccchheeeccccHHHHHHHHHHHHhhcCCCchhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhh
Confidence 22 22333333333345566666666666655433222334454333 33344566666666666655543
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.67 E-value=0.00041 Score=65.81 Aligned_cols=153 Identities=16% Similarity=0.155 Sum_probs=123.3
Q ss_pred HHHHHHHHHHHHhC-CCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCc-ChhhHHHHHHHHHhcCCchHHHHHH
Q 036198 323 VEEAYKFLEEMGNK-GYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWP-SVQTYNMLISMYFELGEPDGAFETW 400 (499)
Q Consensus 323 ~~~a~~~~~~m~~~-~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~ 400 (499)
.+...++++++... .+.| .-+|...++.-.+...++.|..+|.+..+.+..+ ++..++++|..|| .++.+-|.++|
T Consensus 347 ~~~~~~~~~~ll~~~~~~~-tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIF 424 (656)
T KOG1914|consen 347 EKKVHEIYNKLLKIEDIDL-TLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIF 424 (656)
T ss_pred hhhhHHHHHHHHhhhccCC-ceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHH
Confidence 55666667666554 2333 4578889999999999999999999999988777 7788899999888 58889999999
Q ss_pred HHHhHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcC
Q 036198 401 HEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLP--YRKFDSYLMQLSVIGDLGAIHKLSDHMRKFYN 478 (499)
Q Consensus 401 ~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~ 478 (499)
+.-.++ ..-+..--...+.-+...|+-..|..+|++.+..++.|+ ...|..++.-=..-|+...+.++-+++...++
T Consensus 425 eLGLkk-f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~ 503 (656)
T KOG1914|consen 425 ELGLKK-FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFP 503 (656)
T ss_pred HHHHHh-cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcc
Confidence 975544 122333345677888889999999999999998866655 46899999988999999999999999998888
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.61 E-value=0.00036 Score=62.39 Aligned_cols=308 Identities=11% Similarity=0.066 Sum_probs=215.1
Q ss_pred CCHHHHHHHHHHHHhCCChHHHHHHHHHhhcCCCCChhhHHHH---------------HHHHHHHHHHcCCCCCHHHH-H
Q 036198 175 PEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNIL---------------GMQTLEEMIQMGHAPDNFTY-N 238 (499)
Q Consensus 175 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~~~~~l---------------a~~~~~~m~~~g~~p~~~~~-~ 238 (499)
.++.-.-.+...+...|++.+|+.-|....++ |...|.++ |+.-+...++ .+||...- -
T Consensus 36 advekhlElGk~lla~~Q~sDALt~yHaAve~---dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVle--lKpDF~~ARi 110 (504)
T KOG0624|consen 36 ADVEKHLELGKELLARGQLSDALTHYHAAVEG---DPNNYQAIFRRATVYLAMGKSKAALQDLSRVLE--LKPDFMAARI 110 (504)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcC---CchhHHHHHHHHHHHhhhcCCccchhhHHHHHh--cCccHHHHHH
Confidence 35555667778888888888888888887765 33333333 4444555544 45554321 1
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHHHcCCCCCCCCH----------HH--HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcC
Q 036198 239 TAIDTFCKARMVTEAADLFEFMRTKGSTISSPTA----------KT--YAIMIVALVQNDRMEECFSLLGHMINSGCLPD 306 (499)
Q Consensus 239 ~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~p~~----------~~--~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~ 306 (499)
.-...+.+.|+++.|..=|+...+..... ..+. .. ....+..+..+|+...|......+.+.. +.|
T Consensus 111 QRg~vllK~Gele~A~~DF~~vl~~~~s~-~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~-~Wd 188 (504)
T KOG0624|consen 111 QRGVVLLKQGELEQAEADFDQVLQHEPSN-GLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQ-PWD 188 (504)
T ss_pred HhchhhhhcccHHHHHHHHHHHHhcCCCc-chhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcC-cch
Confidence 22356789999999999999998875210 0111 11 2234556677899999999999999874 678
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcChhh-H---HH
Q 036198 307 VSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQT-Y---NM 382 (499)
Q Consensus 307 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~-~---~~ 382 (499)
...|..-..+|...|++..|..=++...+..-. +..++--+-..+...|+.+.++....+..+.+ ||... | -.
T Consensus 189 a~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~D-nTe~~ykis~L~Y~vgd~~~sL~~iRECLKld--pdHK~Cf~~YKk 265 (504)
T KOG0624|consen 189 ASLRQARAKCYIAEGEPKKAIHDLKQASKLSQD-NTEGHYKISQLLYTVGDAENSLKEIRECLKLD--PDHKLCFPFYKK 265 (504)
T ss_pred hHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccc-chHHHHHHHHHHHhhhhHHHHHHHHHHHHccC--cchhhHHHHHHH
Confidence 889999999999999999999888777665433 45556666777888999999999998888743 55332 2 11
Q ss_pred -------H--HHHHHhcCCchHHHHHHHHHhHCCCCCCH---HHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHH
Q 036198 383 -------L--ISMYFELGEPDGAFETWHEMDKRGCAQDV---DTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKF 450 (499)
Q Consensus 383 -------l--i~~~~~~~~~~~a~~~~~~m~~~~~~p~~---~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~ 450 (499)
| +......++|.++.+-.+...+....... ..+..+-.++...|.+.+|++...+.++.. +.|..++
T Consensus 266 lkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d-~~dv~~l 344 (504)
T KOG0624|consen 266 LKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDID-PDDVQVL 344 (504)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcC-chHHHHH
Confidence 1 22334567788888877777665322122 234455667777899999999999998764 2247788
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhhcChhHHHHHHHHHhhhh
Q 036198 451 DSYLMQLSVIGDLGAIHKLSDHMRKFYNPVIARRLALNQKRVR 493 (499)
Q Consensus 451 ~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~~ 493 (499)
.--..+|.-...++.|+.-|+...+..+....-+-++....+.
T Consensus 345 ~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~~~reGle~Akrl 387 (504)
T KOG0624|consen 345 CDRAEAYLGDEMYDDAIHDYEKALELNESNTRAREGLERAKRL 387 (504)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHH
Confidence 8888999999999999999999998887776666666555443
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.59 E-value=0.00016 Score=66.96 Aligned_cols=235 Identities=11% Similarity=0.028 Sum_probs=158.9
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHcCCCcCHHhHHHHHH
Q 036198 237 YNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQND-RMEECFSLLGHMINSGCLPDVSTYKEVLE 315 (499)
Q Consensus 237 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~-~~~~a~~~~~~m~~~~~~~~~~~~~~ll~ 315 (499)
+..+-..+...++.++|+.+..++.+.. +-+..+|+.--.++...| ++++++..++++.+.. +.+..+|+.--.
T Consensus 40 ~~~~ra~l~~~e~serAL~lt~~aI~ln----P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~ 114 (320)
T PLN02789 40 MDYFRAVYASDERSPRALDLTADVIRLN----PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRW 114 (320)
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHC----chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHH
Confidence 3444455566778889999999888864 334556666666666666 5788999998888764 334455654444
Q ss_pred HHHhcCCH--HHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcChhhHHHHHHHHHhc---
Q 036198 316 GMCLAGKV--EEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFEL--- 390 (499)
Q Consensus 316 ~~~~~g~~--~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~--- 390 (499)
.+.+.|+. +++.++++.+.+.+.+ +..+|+...-++...|+++++++.++++++.+. -+...|+.....+.+.
T Consensus 115 ~l~~l~~~~~~~el~~~~kal~~dpk-Ny~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~-~N~sAW~~R~~vl~~~~~l 192 (320)
T PLN02789 115 LAEKLGPDAANKELEFTRKILSLDAK-NYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDV-RNNSAWNQRYFVITRSPLL 192 (320)
T ss_pred HHHHcCchhhHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCC-CchhHHHHHHHHHHhcccc
Confidence 45555653 6778888888877654 778888888888888999999999999988764 4556666655555443
Q ss_pred CCc----hHHHHHHHHHhHCCCCCCHHHHHHHHHHHHhC----CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-
Q 036198 391 GEP----DGAFETWHEMDKRGCAQDVDTYCVMIDGLFDC----SKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIG- 461 (499)
Q Consensus 391 ~~~----~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~----g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g- 461 (499)
|.. +++.+....+.... +-|...|+-+...+... ++..+|.+.+.+....++ .+...+..|++.|+...
T Consensus 193 ~~~~~~~e~el~y~~~aI~~~-P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~-~s~~al~~l~d~~~~~~~ 270 (320)
T PLN02789 193 GGLEAMRDSELKYTIDAILAN-PRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDS-NHVFALSDLLDLLCEGLQ 270 (320)
T ss_pred ccccccHHHHHHHHHHHHHhC-CCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccC-CcHHHHHHHHHHHHhhhc
Confidence 222 35666665665542 23566777777777663 344668888888766553 36777888888887632
Q ss_pred -----------------CHHHHHHHHHHHHhhcChhH
Q 036198 462 -----------------DLGAIHKLSDHMRKFYNPVI 481 (499)
Q Consensus 462 -----------------~~~~a~~~~~~m~~~~~~~~ 481 (499)
..++|.++++.+ +.+.|.-
T Consensus 271 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~l-~~~d~ir 306 (320)
T PLN02789 271 PTAEFRDTVDTLAEELSDSTLAQAVCSEL-EVADPMR 306 (320)
T ss_pred cchhhhhhhhccccccccHHHHHHHHHHH-HhhCcHH
Confidence 347799999999 4555543
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.57 E-value=8e-05 Score=77.86 Aligned_cols=248 Identities=13% Similarity=0.105 Sum_probs=164.5
Q ss_pred hHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHHhhhcCCC
Q 036198 95 EKIAFRFFMWAGHQDNYAHEPLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLMILKQYTEKIKVKTQ 174 (499)
Q Consensus 95 ~~~a~~~f~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 174 (499)
|..|-.|-+.+...++ +...|-..|.... ..+..++|.++.++....=- +... .
T Consensus 1441 pesaeDferlvrssPN---SSi~WI~YMaf~L----elsEiekAR~iaerAL~tIN-~REe------------------e 1494 (1710)
T KOG1070|consen 1441 PESAEDFERLVRSSPN---SSILWIRYMAFHL----ELSEIEKARKIAERALKTIN-FREE------------------E 1494 (1710)
T ss_pred CcCHHHHHHHHhcCCC---cchHHHHHHHHHh----hhhhhHHHHHHHHHHhhhCC-cchh------------------H
Confidence 3344455544444443 4555666666666 77888888888888664320 0000 0
Q ss_pred CCHHHHHHHHHHHHhCCChHHHHHHHHHhhcCCCCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHH
Q 036198 175 PEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAA 254 (499)
Q Consensus 175 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~~~~~la~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~ 254 (499)
--...|.++++.-...|.-+...++|++..+- --.-..|..|...|.+.+++++|.
T Consensus 1495 EKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy------------------------cd~~~V~~~L~~iy~k~ek~~~A~ 1550 (1710)
T KOG1070|consen 1495 EKLNIWIAYLNLENAYGTEESLKKVFERACQY------------------------CDAYTVHLKLLGIYEKSEKNDEAD 1550 (1710)
T ss_pred HHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh------------------------cchHHHHHHHHHHHHHhhcchhHH
Confidence 11236777777777777777777888777651 112346778888888888888888
Q ss_pred HHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcC---HHhHHHHHHHHHhcCCHHHHHHHHH
Q 036198 255 DLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPD---VSTYKEVLEGMCLAGKVEEAYKFLE 331 (499)
Q Consensus 255 ~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~---~~~~~~ll~~~~~~g~~~~a~~~~~ 331 (499)
++++.|.++- .-....|...+..+.+.++-+.|..++.+..+. .|. .......+..-.+.|+.+.+..+|+
T Consensus 1551 ell~~m~KKF----~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~--lPk~eHv~~IskfAqLEFk~GDaeRGRtlfE 1624 (1710)
T KOG1070|consen 1551 ELLRLMLKKF----GQTRKVWIMYADFLLRQNEAEAARELLKRALKS--LPKQEHVEFISKFAQLEFKYGDAERGRTLFE 1624 (1710)
T ss_pred HHHHHHHHHh----cchhhHHHHHHHHHhcccHHHHHHHHHHHHHhh--cchhhhHHHHHHHHHHHhhcCCchhhHHHHH
Confidence 8888888773 346678888888888888888888888877765 233 3344445566677888888888888
Q ss_pred HHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCh--hhHHHHHHHHHhcCCchHHHHH
Q 036198 332 EMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSV--QTYNMLISMYFELGEPDGAFET 399 (499)
Q Consensus 332 ~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~--~~~~~li~~~~~~~~~~~a~~~ 399 (499)
.......+ -...|+..|..-.+.|+.+.+..+|++....++.|-. ..|.-.+..=-+.|+-+.++.+
T Consensus 1625 gll~ayPK-RtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~vE~V 1693 (1710)
T KOG1070|consen 1625 GLLSAYPK-RTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEKNVEYV 1693 (1710)
T ss_pred HHHhhCcc-chhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchhhHHHH
Confidence 87766433 5667888888888888888888888888887765542 3455555554555555544443
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.56 E-value=0.00054 Score=61.56 Aligned_cols=200 Identities=12% Similarity=0.079 Sum_probs=128.4
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHHHcCCCCCCCCHHHHHHHH-----HHHHHcCCHHHHHHHHHHHHHcCCCcCH-HhHHH
Q 036198 239 TAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMI-----VALVQNDRMEECFSLLGHMINSGCLPDV-STYKE 312 (499)
Q Consensus 239 ~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~p~~~~~~~ll-----~~~~~~~~~~~a~~~~~~m~~~~~~~~~-~~~~~ 312 (499)
.++--|.+.+++.+|..+.+++.. ..|-....-.+. .-......+.-|.+.|.-.-+++..-|. ..-.+
T Consensus 290 NL~iYyL~q~dVqeA~~L~Kdl~P-----ttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQs 364 (557)
T KOG3785|consen 290 NLIIYYLNQNDVQEAISLCKDLDP-----TTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQS 364 (557)
T ss_pred hheeeecccccHHHHHHHHhhcCC-----CChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHH
Confidence 455567888999999988876532 223222222222 1122223355666666655555544333 23445
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcChhhH-HHHHHHHHhcC
Q 036198 313 VLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTY-NMLISMYFELG 391 (499)
Q Consensus 313 ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~-~~li~~~~~~~ 391 (499)
+...+.-..++|+++-.+..+...-..-|... -.+..+++..|.+.+|+++|-.+....++ |..+| ..|.++|.+++
T Consensus 365 mAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn-~N~AQAk~atgny~eaEelf~~is~~~ik-n~~~Y~s~LArCyi~nk 442 (557)
T KOG3785|consen 365 MASYFFLSFQFDDVLTYLNSIESYFTNDDDFN-LNLAQAKLATGNYVEAEELFIRISGPEIK-NKILYKSMLARCYIRNK 442 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCcchhh-hHHHHHHHHhcChHHHHHHHhhhcChhhh-hhHHHHHHHHHHHHhcC
Confidence 66666777788999888888876643333333 45778899999999999999887654443 45555 56678889999
Q ss_pred CchHHHHHHHHHhHCCCCCCHHHHHH-HHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHH
Q 036198 392 EPDGAFETWHEMDKRGCAQDVDTYCV-MIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKF 450 (499)
Q Consensus 392 ~~~~a~~~~~~m~~~~~~p~~~~~~~-li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~ 450 (499)
.++.|++++-.+... .+..+.-. +..-|.+.+.+--|-+.|+.+...+ |++..|
T Consensus 443 kP~lAW~~~lk~~t~---~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lD--P~pEnW 497 (557)
T KOG3785|consen 443 KPQLAWDMMLKTNTP---SERFSLLQLIANDCYKANEFYYAAKAFDELEILD--PTPENW 497 (557)
T ss_pred CchHHHHHHHhcCCc---hhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccC--CCcccc
Confidence 999999887766432 23333333 4456778898888888888887654 454444
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.54 E-value=1.9e-05 Score=70.67 Aligned_cols=189 Identities=9% Similarity=-0.041 Sum_probs=130.8
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcC---HHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH--h
Q 036198 269 SPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPD---VSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDI--V 343 (499)
Q Consensus 269 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~---~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~--~ 343 (499)
......+..+...+...|++++|...|+++.+.. +.+ ...+..+..++...|++++|...++.+.+....... .
T Consensus 30 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 108 (235)
T TIGR03302 30 EWPAEELYEEAKEALDSGDYTEAIKYFEALESRY-PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADY 108 (235)
T ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHH
Confidence 4567788888888999999999999999988753 122 245677788899999999999999999876432111 1
Q ss_pred hHHHHHHHHHHc--------CCHHHHHHHHHHHHHCCCCcChh-hHHHHHHHHHhcCCchHHHHHHHHHhHCCCCCCHHH
Q 036198 344 TYNCFLKVLCDN--------KNGDEALRLYGRMIEVGCWPSVQ-TYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDT 414 (499)
Q Consensus 344 ~~~~li~~~~~~--------g~~~~a~~~~~~m~~~~~~~~~~-~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~ 414 (499)
++..+..++.+. |+++.|.+.++.+.+.. |+.. .+..+... .. ... ... ..
T Consensus 109 a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~a~~~~-~~---~~~------~~~--------~~ 168 (235)
T TIGR03302 109 AYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRY--PNSEYAPDAKKRM-DY---LRN------RLA--------GK 168 (235)
T ss_pred HHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHC--CCChhHHHHHHHH-HH---HHH------HHH--------HH
Confidence 344444555443 67888888888887753 4432 22222111 10 000 000 01
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcC
Q 036198 415 YCVMIDGLFDCSKVEEACFLLEEVVNKGL--KLPYRKFDSYLMQLSVIGDLGAIHKLSDHMRKFYN 478 (499)
Q Consensus 415 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~--~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~ 478 (499)
...+...+.+.|++++|...+++..+... +.....+..+..++.+.|++++|..+++.+...++
T Consensus 169 ~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 169 ELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYP 234 (235)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 12455678899999999999999987642 22457888999999999999999999999988775
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=98.52 E-value=0.0013 Score=63.93 Aligned_cols=363 Identities=14% Similarity=0.112 Sum_probs=188.7
Q ss_pred hHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHHHcCCCcccHHHHH------HHHHHHHHh
Q 036198 95 EKIAFRFFMWAGHQDNYAHEPLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLL------MILKQYTEK 168 (499)
Q Consensus 95 ~~~a~~~f~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~------~~l~~~~~~ 168 (499)
.+.|....+...+ +-.-+.+.|..+.-.+- ....+++|...|+.....+ +.....+. .-++-+...
T Consensus 57 ~~ea~~~vr~glr--~d~~S~vCwHv~gl~~R----~dK~Y~eaiKcy~nAl~~~--~dN~qilrDlslLQ~QmRd~~~~ 128 (700)
T KOG1156|consen 57 KEEAYELVRLGLR--NDLKSHVCWHVLGLLQR----SDKKYDEAIKCYRNALKIE--KDNLQILRDLSLLQIQMRDYEGY 128 (700)
T ss_pred hHHHHHHHHHHhc--cCcccchhHHHHHHHHh----hhhhHHHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHHHhhhhH
Confidence 3446565554432 11236677877766666 7889999999999988877 33333222 222222111
Q ss_pred -----hhcCCCCC-HHHHHHHHHHHHhCCChHHHHHHHHHhhcCC--CCChhhHHHH---------------HHHHHHHH
Q 036198 169 -----IKVKTQPE-INALNLLLDALCKCGLVDYAETICKRVKNKV--KPNANTYNIL---------------GMQTLEEM 225 (499)
Q Consensus 169 -----~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~--~p~~~~~~~l---------------a~~~~~~m 225 (499)
.-....|+ -..|..+..++.-.|+...|..+.+...... .|+...+... -.+.++.+
T Consensus 129 ~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L 208 (700)
T KOG1156|consen 129 LETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHL 208 (700)
T ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHH
Confidence 11223343 4568888888888999999999998887642 4555554433 11222222
Q ss_pred HHc-CCCCCHHH-HHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCCCCHHHHHHHHH-HHHHcCCHHHHH-HHHHHHHHc
Q 036198 226 IQM-GHAPDNFT-YNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIV-ALVQNDRMEECF-SLLGHMINS 301 (499)
Q Consensus 226 ~~~-g~~p~~~~-~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~-~~~~~~~~~~a~-~~~~~m~~~ 301 (499)
.+. +...|-.. -.+-...+.+.+++++|..++..+.... ||...|.-.+. ++.+..+.-++. .+|....+.
T Consensus 209 ~~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rn-----Pdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~ 283 (700)
T KOG1156|consen 209 LDNEKQIVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERN-----PDNLDYYEGLEKALGKIKDMLEALKALYAILSEK 283 (700)
T ss_pred HhhhhHHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhC-----chhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhc
Confidence 211 00111111 1233455667777777777777777764 55554444443 333333333333 444444332
Q ss_pred CCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHH----HCC-----
Q 036198 302 GCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMI----EVG----- 372 (499)
Q Consensus 302 ~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~----~~~----- 372 (499)
.+-....-..=+.......-.+..-+++..+.+.|+++ ++..+...|-.-...+-..++.-.+. ..|
T Consensus 284 -y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~---vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~ 359 (700)
T KOG1156|consen 284 -YPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPS---VFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFL 359 (700)
T ss_pred -CcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCc---hhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcc
Confidence 10000000000111111222333344455555666543 33344443322221111111111111 111
Q ss_pred -----CCcChh--hHHHHHHHHHhcCCchHHHHHHHHHhHCCCCCCHH-HHHHHHHHHHhCCCHHHHHHHHHHHHHCCCC
Q 036198 373 -----CWPSVQ--TYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVD-TYCVMIDGLFDCSKVEEACFLLEEVVNKGLK 444 (499)
Q Consensus 373 -----~~~~~~--~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~-~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~ 444 (499)
-+|+.. ++-.++..|-+.|+++.|...++...++ .|+.. -|..=.+.+...|++++|..++++..+.+.
T Consensus 360 D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdH--TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~- 436 (700)
T KOG1156|consen 360 DDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDH--TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDT- 436 (700)
T ss_pred cccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhcc--CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccc-
Confidence 034443 3345666777788888888888877765 44432 343444667777888888888888776653
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhc
Q 036198 445 LPYRKFDSYLMQLSVIGDLGAIHKLSDHMRKFY 477 (499)
Q Consensus 445 p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~ 477 (499)
+|...-..-..-..+..+.++|.++.....+.+
T Consensus 437 aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~ 469 (700)
T KOG1156|consen 437 ADRAINSKCAKYMLRANEIEEAEEVLSKFTREG 469 (700)
T ss_pred hhHHHHHHHHHHHHHccccHHHHHHHHHhhhcc
Confidence 455444455556667777777777776665544
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.51 E-value=6.1e-06 Score=75.27 Aligned_cols=225 Identities=13% Similarity=0.103 Sum_probs=135.8
Q ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHhhcCCCCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHH
Q 036198 177 INALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADL 256 (499)
Q Consensus 177 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~~~~~la~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~ 256 (499)
......+.+++...|+.+.+. .++... -.|.......+...+...++-+.+..-
T Consensus 35 ~e~~~~~~Rs~iAlg~~~~vl---~ei~~~-----------------------~~~~l~av~~la~y~~~~~~~e~~l~~ 88 (290)
T PF04733_consen 35 LERDFYQYRSYIALGQYDSVL---SEIKKS-----------------------SSPELQAVRLLAEYLSSPSDKESALEE 88 (290)
T ss_dssp HHHHHHHHHHHHHTT-HHHHH---HHS-TT-----------------------SSCCCHHHHHHHHHHCTSTTHHCHHHH
T ss_pred HHHHHHHHHHHHHcCChhHHH---HHhccC-----------------------CChhHHHHHHHHHHHhCccchHHHHHH
Confidence 334556677788888776543 333322 244554444444333332334444444
Q ss_pred HHHHHHcCCCCCCCCHHHHHH-HHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 036198 257 FEFMRTKGSTISSPTAKTYAI-MIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGN 335 (499)
Q Consensus 257 ~~~m~~~~~~~~~p~~~~~~~-ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~ 335 (499)
+++..... ..++..++.. ....+...|++++|++++..- .+.......+..|.+.++++.|.+.++.|.+
T Consensus 89 l~~~~~~~---~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~ 159 (290)
T PF04733_consen 89 LKELLADQ---AGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQ 159 (290)
T ss_dssp HHHCCCTS------CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHC
T ss_pred HHHHHHhc---cccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 43332222 1222223322 223455578888888877542 4566777788888999999999999999887
Q ss_pred CCCCCCHhhHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCCcChhhHHHHHHHHHhcCCchHHHHHHHHHhHCCCCCC
Q 036198 336 KGYPPDIVTYNCFLKVLCD----NKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQD 411 (499)
Q Consensus 336 ~~~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~ 411 (499)
.+ +..+...+..++.. .+.+.+|..+|+++.+. ..++..+.+.+..++...|++++|.+++.+..+.... +
T Consensus 160 ~~---eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~-~ 234 (290)
T PF04733_consen 160 ID---EDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPN-D 234 (290)
T ss_dssp CS---CCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CC-H
T ss_pred cC---CcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccC-C
Confidence 63 33444445555443 23688999999997654 4577888888888899999999999998887765322 4
Q ss_pred HHHHHHHHHHHHhCCCH-HHHHHHHHHHHHC
Q 036198 412 VDTYCVMIDGLFDCSKV-EEACFLLEEVVNK 441 (499)
Q Consensus 412 ~~~~~~li~~~~~~g~~-~~a~~~~~~m~~~ 441 (499)
..+...++.+....|+. +.+.+++.++...
T Consensus 235 ~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~ 265 (290)
T PF04733_consen 235 PDTLANLIVCSLHLGKPTEAAERYLSQLKQS 265 (290)
T ss_dssp HHHHHHHHHHHHHTT-TCHHHHHHHHHCHHH
T ss_pred HHHHHHHHHHHHHhCCChhHHHHHHHHHHHh
Confidence 55666677776777776 6677788887765
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.50 E-value=6.9e-05 Score=73.37 Aligned_cols=240 Identities=15% Similarity=0.129 Sum_probs=180.0
Q ss_pred CCCCCHHHHHHHHHHHHhCCChHHHHHHHHHhhcCCCCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHh
Q 036198 172 KTQPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVT 251 (499)
Q Consensus 172 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~~~~~la~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~ 251 (499)
..+|-...-..+...+...|-...|..+|+++. .|..++.+|+..|+..
T Consensus 393 ~lpp~Wq~q~~laell~slGitksAl~I~Erle-------------------------------mw~~vi~CY~~lg~~~ 441 (777)
T KOG1128|consen 393 HLPPIWQLQRLLAELLLSLGITKSALVIFERLE-------------------------------MWDPVILCYLLLGQHG 441 (777)
T ss_pred CCCCcchHHHHHHHHHHHcchHHHHHHHHHhHH-------------------------------HHHHHHHHHHHhcccc
Confidence 455656666778888999999999999998653 4677899999999999
Q ss_pred HHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHHHHHHH
Q 036198 252 EAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLE 331 (499)
Q Consensus 252 ~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~ 331 (499)
+|..+..+-.++ +|+...|..+.+.....--+++|.++.+..... .-..+.....+.++++++.+.|+
T Consensus 442 kaeei~~q~lek-----~~d~~lyc~LGDv~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle 509 (777)
T KOG1128|consen 442 KAEEINRQELEK-----DPDPRLYCLLGDVLHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLE 509 (777)
T ss_pred hHHHHHHHHhcC-----CCcchhHHHhhhhccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHH
Confidence 999999888774 588889998888887777788888888776432 11112222344788999999998
Q ss_pred HHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcC-hhhHHHHHHHHHhcCCchHHHHHHHHHhHCCCCC
Q 036198 332 EMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPS-VQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQ 410 (499)
Q Consensus 332 ~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p 410 (499)
.-.+.+. ....+|-....+..+.++++.|.+.|...... .|| ...||.+-.+|.+.++-.+|...+.+..+.. .-
T Consensus 510 ~sl~~np-lq~~~wf~~G~~ALqlek~q~av~aF~rcvtL--~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~ 585 (777)
T KOG1128|consen 510 RSLEINP-LQLGTWFGLGCAALQLEKEQAAVKAFHRCVTL--EPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQ 585 (777)
T ss_pred HHhhcCc-cchhHHHhccHHHHHHhhhHHHHHHHHHHhhc--CCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CC
Confidence 7666532 25677888888888899999999999888774 354 5689999999999999999999999988876 33
Q ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHH
Q 036198 411 DVDTYCVMIDGLFDCSKVEEACFLLEEVVNKG-LKLPYRKFDSYLMQLS 458 (499)
Q Consensus 411 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~-~~p~~~~~~~ll~~~~ 458 (499)
+...|...+-...+.|.+++|++.+.++.+.. ..-|......++....
T Consensus 586 ~w~iWENymlvsvdvge~eda~~A~~rll~~~~~~~d~~vl~~iv~~~~ 634 (777)
T KOG1128|consen 586 HWQIWENYMLVSVDVGEFEDAIKAYHRLLDLRKKYKDDEVLLIIVRTVL 634 (777)
T ss_pred CCeeeechhhhhhhcccHHHHHHHHHHHHHhhhhcccchhhHHHHHHHH
Confidence 55566677777788999999999998876432 1124444444444443
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.49 E-value=1.3e-05 Score=78.32 Aligned_cols=222 Identities=13% Similarity=0.145 Sum_probs=180.1
Q ss_pred CCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHh
Q 036198 230 HAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVST 309 (499)
Q Consensus 230 ~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~ 309 (499)
.+|-...-..+...+.+.|-...|..+|++. ..|..+|.+|+..|+..+|..+..+..+. +|+...
T Consensus 394 lpp~Wq~q~~laell~slGitksAl~I~Erl------------emw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~l 459 (777)
T KOG1128|consen 394 LPPIWQLQRLLAELLLSLGITKSALVIFERL------------EMWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRL 459 (777)
T ss_pred CCCcchHHHHHHHHHHHcchHHHHHHHHHhH------------HHHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchh
Confidence 3444444567778889999999999999876 45667889999999999999999988884 799999
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcChhhHHHHHHHHHh
Q 036198 310 YKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFE 389 (499)
Q Consensus 310 ~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~ 389 (499)
|..+.+......-+++|.++.+....+ +-..+.....+.++++++.+.|+.-.+.. ..-..+|-.+-.+..+
T Consensus 460 yc~LGDv~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALq 531 (777)
T KOG1128|consen 460 YCLLGDVLHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQ 531 (777)
T ss_pred HHHhhhhccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHH
Confidence 999999888888899999998876443 11122222334799999999999876643 2345688888888889
Q ss_pred cCCchHHHHHHHHHhHCCCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 036198 390 LGEPDGAFETWHEMDKRGCAQ-DVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHK 468 (499)
Q Consensus 390 ~~~~~~a~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~ 468 (499)
.+++..|.+.|...... .| +...||.+-.+|.+.++-.+|...+++..+-+ .-+...|...+-...+.|.+++|.+
T Consensus 532 lek~q~av~aF~rcvtL--~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~ 608 (777)
T KOG1128|consen 532 LEKEQAAVKAFHRCVTL--EPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIK 608 (777)
T ss_pred HhhhHHHHHHHHHHhhc--CCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHH
Confidence 99999999999998765 44 56789999999999999999999999999887 4577788888888999999999999
Q ss_pred HHHHHHhh
Q 036198 469 LSDHMRKF 476 (499)
Q Consensus 469 ~~~~m~~~ 476 (499)
.+.++.+.
T Consensus 609 A~~rll~~ 616 (777)
T KOG1128|consen 609 AYHRLLDL 616 (777)
T ss_pred HHHHHHHh
Confidence 99988754
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.49 E-value=0.00071 Score=68.82 Aligned_cols=289 Identities=14% Similarity=0.137 Sum_probs=168.8
Q ss_pred CCCCCHHHHHHHHHccCC-ChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHHHcCCCccc
Q 036198 76 GVPLTTDSVVGVLQRFQF-EEKIAFRFFMWAGHQDNYAHEPLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVP 154 (499)
Q Consensus 76 ~~~~~~~~~~~~l~~~~~-~~~~a~~~f~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~ 154 (499)
-..-+++++..+|..-.. .....-++....... ..|+..-+..+.++. ..+-..+..++++++.-.+.....
T Consensus 947 v~R~D~~LW~~VL~e~n~~rRqLiDqVv~tal~E---~~dPe~vS~tVkAfM----tadLp~eLIELLEKIvL~~S~Fse 1019 (1666)
T KOG0985|consen 947 VERSDPDLWAKVLNEENPYRRQLIDQVVQTALPE---TQDPEEVSVTVKAFM----TADLPNELIELLEKIVLDNSVFSE 1019 (1666)
T ss_pred HhccChHHHHHHHhccChHHHHHHHHHHHhcCCc---cCChHHHHHHHHHHH----hcCCcHHHHHHHHHHhcCCccccc
Confidence 345667777777744221 111222222222111 236677777888888 788888999999998766543322
Q ss_pred HHHHHHHHH-HHHHh-----hhcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHhhcCCCCChhhHHHHHHHH--HHHHH
Q 036198 155 VDVLLMILK-QYTEK-----IKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQT--LEEMI 226 (499)
Q Consensus 155 ~~~~~~~l~-~~~~~-----~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~~~~~la~~~--~~~m~ 226 (499)
...+..++- .-.+. ...--..|...--.+...+..++-+++|..+|++..- +....+.+...+ +++..
T Consensus 1020 ~~nLQnLLiLtAikad~trVm~YI~rLdnyDa~~ia~iai~~~LyEEAF~ifkkf~~----n~~A~~VLie~i~~ldRA~ 1095 (1666)
T KOG0985|consen 1020 NRNLQNLLILTAIKADRTRVMEYINRLDNYDAPDIAEIAIENQLYEEAFAIFKKFDM----NVSAIQVLIENIGSLDRAY 1095 (1666)
T ss_pred chhhhhhHHHHHhhcChHHHHHHHHHhccCCchhHHHHHhhhhHHHHHHHHHHHhcc----cHHHHHHHHHHhhhHHHHH
Confidence 222221111 00000 0000001111112234455667778888888887643 233333331111 11111
Q ss_pred HcCC-CCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc
Q 036198 227 QMGH-APDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLP 305 (499)
Q Consensus 227 ~~g~-~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~ 305 (499)
+... --.+..|..+..+-.+.|.+.+|++-|-+. .|...|.-++....+.|.|++-.+.+...++..-.|
T Consensus 1096 efAe~~n~p~vWsqlakAQL~~~~v~dAieSyika---------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~ 1166 (1666)
T KOG0985|consen 1096 EFAERCNEPAVWSQLAKAQLQGGLVKDAIESYIKA---------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREP 1166 (1666)
T ss_pred HHHHhhCChHHHHHHHHHHHhcCchHHHHHHHHhc---------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCc
Confidence 1100 114567888999988999998888877432 356788899999999999999888887777665555
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcChhhHHHHHH
Q 036198 306 DVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLIS 385 (499)
Q Consensus 306 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~ 385 (499)
... +.|+-+|++.++..+.+++. .-|+......+.+-|...+.++.|.-+|... .-|..|..
T Consensus 1167 ~id--~eLi~AyAkt~rl~elE~fi-------~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~v---------SN~a~La~ 1228 (1666)
T KOG0985|consen 1167 YID--SELIFAYAKTNRLTELEEFI-------AGPNVANIQQVGDRCFEEKMYEAAKLLYSNV---------SNFAKLAS 1228 (1666)
T ss_pred cch--HHHHHHHHHhchHHHHHHHh-------cCCCchhHHHHhHHHhhhhhhHHHHHHHHHh---------hhHHHHHH
Confidence 443 46888899998887766554 2367777777777788888888877776543 34555555
Q ss_pred HHHhcCCchHHHHHHHH
Q 036198 386 MYFELGEPDGAFETWHE 402 (499)
Q Consensus 386 ~~~~~~~~~~a~~~~~~ 402 (499)
.+...|++..|.+.-++
T Consensus 1229 TLV~LgeyQ~AVD~aRK 1245 (1666)
T KOG0985|consen 1229 TLVYLGEYQGAVDAARK 1245 (1666)
T ss_pred HHHHHHHHHHHHHHhhh
Confidence 56666666666554433
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.46 E-value=0.002 Score=70.14 Aligned_cols=279 Identities=11% Similarity=0.031 Sum_probs=173.5
Q ss_pred HHHHHHhCCChHHHHHHHHHhhcCCCCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHH
Q 036198 183 LLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRT 262 (499)
Q Consensus 183 li~~~~~~g~~~~A~~~~~~m~~~~~p~~~~~~~la~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 262 (499)
+...+...|++++|...+++.....+.+. .+ ......+.+...+...|++++|...+++...
T Consensus 458 ~a~~~~~~g~~~~A~~~~~~al~~~~~~~-~~-----------------~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~ 519 (903)
T PRK04841 458 RAQVAINDGDPEEAERLAELALAELPLTW-YY-----------------SRIVATSVLGEVHHCKGELARALAMMQQTEQ 519 (903)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcCCCcc-HH-----------------HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 33455678999999999887654211110 00 0112345666777889999999999988765
Q ss_pred cCCCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc----CCC--c-CHHhHHHHHHHHHhcCCHHHHHHHHHHH
Q 036198 263 KGSTISSPT--AKTYAIMIVALVQNDRMEECFSLLGHMINS----GCL--P-DVSTYKEVLEGMCLAGKVEEAYKFLEEM 333 (499)
Q Consensus 263 ~~~~~~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~----~~~--~-~~~~~~~ll~~~~~~g~~~~a~~~~~~m 333 (499)
.......+. ..++..+...+...|++++|...+++..+. +.. + ....+..+...+...|++++|...+.+.
T Consensus 520 ~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~a 599 (903)
T PRK04841 520 MARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKG 599 (903)
T ss_pred HHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHh
Confidence 321101111 234555666778899999999998876542 211 1 2233445556677789999999988876
Q ss_pred HhC--CCCC--CHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC-cChhhH-----HHHHHHHHhcCCchHHHHHHHHH
Q 036198 334 GNK--GYPP--DIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCW-PSVQTY-----NMLISMYFELGEPDGAFETWHEM 403 (499)
Q Consensus 334 ~~~--~~~p--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~-~~~~~~-----~~li~~~~~~~~~~~a~~~~~~m 403 (499)
... ...+ ....+..+...+...|++++|...+.+....... .....+ ...+..+...|+.+.|...+...
T Consensus 600 l~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~ 679 (903)
T PRK04841 600 LEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQA 679 (903)
T ss_pred HHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhc
Confidence 542 1112 2334444556777899999999988887542110 111111 11224455678899998888775
Q ss_pred hHCCCCCCH---HHHHHHHHHHHhCCCHHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 036198 404 DKRGCAQDV---DTYCVMIDGLFDCSKVEEACFLLEEVVNK----GLKLP-YRKFDSYLMQLSVIGDLGAIHKLSDHMRK 475 (499)
Q Consensus 404 ~~~~~~p~~---~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~m~~ 475 (499)
......... ..+..+..++...|+.++|...+.+.... |..++ ..+...+..++.+.|+.++|.+.+.+..+
T Consensus 680 ~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~ 759 (903)
T PRK04841 680 PKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALK 759 (903)
T ss_pred CCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 542211111 11345666778889999999998887643 33222 34566667888899999999999988877
Q ss_pred hcCh
Q 036198 476 FYNP 479 (499)
Q Consensus 476 ~~~~ 479 (499)
...+
T Consensus 760 la~~ 763 (903)
T PRK04841 760 LANR 763 (903)
T ss_pred HhCc
Confidence 5543
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.43 E-value=0.00032 Score=60.62 Aligned_cols=231 Identities=13% Similarity=0.034 Sum_probs=152.5
Q ss_pred HHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHH-HHHHHHHHHHcCCCcCHHhHHH
Q 036198 234 NFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEE-CFSLLGHMINSGCLPDVSTYKE 312 (499)
Q Consensus 234 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~-a~~~~~~m~~~~~~~~~~~~~~ 312 (499)
...-.-+-++|.-.|++.....-. ... ..|.......+-......++.+. ...+.+.+.......+......
T Consensus 41 ~e~d~y~~raylAlg~~~~~~~eI---~~~----~~~~lqAvr~~a~~~~~e~~~~~~~~~l~E~~a~~~~~sn~i~~l~ 113 (299)
T KOG3081|consen 41 VELDVYMYRAYLALGQYQIVISEI---KEG----KATPLQAVRLLAEYLELESNKKSILASLYELVADSTDGSNLIDLLL 113 (299)
T ss_pred hHHHHHHHHHHHHccccccccccc---ccc----cCChHHHHHHHHHHhhCcchhHHHHHHHHHHHHhhccchhHHHHHH
Confidence 333344556666666654333221 111 12233333333333333344333 3334444544444444444444
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcChhhHHHHHHHHHhc--
Q 036198 313 VLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFEL-- 390 (499)
Q Consensus 313 ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~-- 390 (499)
-...|+..|++++|++.++... +......=+..+.+..+.+-|.+.++.|.+. .+..|.+.|..++.+.
T Consensus 114 aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~i---ded~tLtQLA~awv~la~ 184 (299)
T KOG3081|consen 114 AAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKMQQI---DEDATLTQLAQAWVKLAT 184 (299)
T ss_pred hhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc---chHHHHHHHHHHHHHHhc
Confidence 5567899999999999887722 3334444445567888999999999999874 3667888777777653
Q ss_pred --CCchHHHHHHHHHhHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH-HHHH
Q 036198 391 --GEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDL-GAIH 467 (499)
Q Consensus 391 --~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~-~~a~ 467 (499)
+.+.+|.-+|++|-++ ..|+..+.+-...++...|++++|..++++.+++... ++.+...++-+-...|.. +-..
T Consensus 185 ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~-dpetL~Nliv~a~~~Gkd~~~~~ 262 (299)
T KOG3081|consen 185 GGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAK-DPETLANLIVLALHLGKDAEVTE 262 (299)
T ss_pred cchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCC-CHHHHHHHHHHHHHhCCChHHHH
Confidence 5688899999999875 5789999999999999999999999999999988755 677777776666666654 5567
Q ss_pred HHHHHHHhhcChhHH
Q 036198 468 KLSDHMRKFYNPVIA 482 (499)
Q Consensus 468 ~~~~~m~~~~~~~~~ 482 (499)
+.+.+++..++..+.
T Consensus 263 r~l~QLk~~~p~h~~ 277 (299)
T KOG3081|consen 263 RNLSQLKLSHPEHPF 277 (299)
T ss_pred HHHHHHHhcCCcchH
Confidence 788888888777665
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=98.41 E-value=0.0025 Score=62.03 Aligned_cols=313 Identities=14% Similarity=0.086 Sum_probs=182.3
Q ss_pred hhhhHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHhhcCCCCC
Q 036198 131 KAKQFRLVCSMLDYMKRNNKVFVPVDVLLMILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPN 210 (499)
Q Consensus 131 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~ 210 (499)
..|+-++|....+.-.+.. .-+.+.|+.+.-.+-...++++|++.|.....-.+.|
T Consensus 53 ~lg~~~ea~~~vr~glr~d------------------------~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN 108 (700)
T KOG1156|consen 53 CLGKKEEAYELVRLGLRND------------------------LKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKDN 108 (700)
T ss_pred cccchHHHHHHHHHHhccC------------------------cccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCc
Confidence 4677778888777766554 2466788888888878888999999998887765666
Q ss_pred hhhHHHH------------HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCCCCHHHHHHH
Q 036198 211 ANTYNIL------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIM 278 (499)
Q Consensus 211 ~~~~~~l------------a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~p~~~~~~~l 278 (499)
...|.-+ .......+.+. .+-....|..+..++.-.|+...|..+.++..+... ..|+...|...
T Consensus 109 ~qilrDlslLQ~QmRd~~~~~~tr~~LLql-~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~--~~~s~~~~e~s 185 (700)
T KOG1156|consen 109 LQILRDLSLLQIQMRDYEGYLETRNQLLQL-RPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQN--TSPSKEDYEHS 185 (700)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHh-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc--cCCCHHHHHHH
Confidence 6666555 11122222221 111344566777777777888888888887776653 24555554433
Q ss_pred HH------HHHHcCCHHHHHHHHHHHHHcCCCcCHHhH-HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHH
Q 036198 279 IV------ALVQNDRMEECFSLLGHMINSGCLPDVSTY-KEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKV 351 (499)
Q Consensus 279 l~------~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~-~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~ 351 (499)
.. .....|..++|.+.+..-... ..|...+ ..-...+.+.+++++|..++..++..+ ||..-|.-.+..
T Consensus 186 e~~Ly~n~i~~E~g~~q~ale~L~~~e~~--i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rn--Pdn~~Yy~~l~~ 261 (700)
T KOG1156|consen 186 ELLLYQNQILIEAGSLQKALEHLLDNEKQ--IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERN--PDNLDYYEGLEK 261 (700)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHhhhhH--HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhC--chhHHHHHHHHH
Confidence 22 334566677777666554433 2232222 233455667777777777777777763 555555444433
Q ss_pred HH-HcCCHHHHH-HHHH----------------------------------HHHHCCCCcChhhHHHHHHHHHhcCCchH
Q 036198 352 LC-DNKNGDEAL-RLYG----------------------------------RMIEVGCWPSVQTYNMLISMYFELGEPDG 395 (499)
Q Consensus 352 ~~-~~g~~~~a~-~~~~----------------------------------~m~~~~~~~~~~~~~~li~~~~~~~~~~~ 395 (499)
+. +-.+.-++. .+|. .+.+.|+++ ++..+...|-.-...+-
T Consensus 262 ~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~---vf~dl~SLyk~p~k~~~ 338 (700)
T KOG1156|consen 262 ALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPS---VFKDLRSLYKDPEKVAF 338 (700)
T ss_pred HHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCc---hhhhhHHHHhchhHhHH
Confidence 32 222222222 3333 333334321 22222222222111111
Q ss_pred HHHHHHHHh----HCC----------CCCCHHHHH--HHHHHHHhCCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHH
Q 036198 396 AFETWHEMD----KRG----------CAQDVDTYC--VMIDGLFDCSKVEEACFLLEEVVNKGLKLP-YRKFDSYLMQLS 458 (499)
Q Consensus 396 a~~~~~~m~----~~~----------~~p~~~~~~--~li~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~ll~~~~ 458 (499)
.+++.-.+. ..| -+|....|. .++..+-..|+++.|..+++...++- |+ +..|..=.+.+.
T Consensus 339 le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHT--PTliEly~~KaRI~k 416 (700)
T KOG1156|consen 339 LEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHT--PTLIELYLVKARIFK 416 (700)
T ss_pred HHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccC--chHHHHHHHHHHHHH
Confidence 111111111 111 145555444 56777889999999999999988763 55 334545558889
Q ss_pred hcCCHHHHHHHHHHHHhhcCh
Q 036198 459 VIGDLGAIHKLSDHMRKFYNP 479 (499)
Q Consensus 459 ~~g~~~~a~~~~~~m~~~~~~ 479 (499)
..|++++|..++++..+...+
T Consensus 417 H~G~l~eAa~~l~ea~elD~a 437 (700)
T KOG1156|consen 417 HAGLLDEAAAWLDEAQELDTA 437 (700)
T ss_pred hcCChHHHHHHHHHHHhccch
Confidence 999999999999999887655
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.41 E-value=7.8e-05 Score=66.66 Aligned_cols=186 Identities=11% Similarity=0.043 Sum_probs=127.2
Q ss_pred CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCH----
Q 036198 233 DNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSP-TAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDV---- 307 (499)
Q Consensus 233 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~---- 307 (499)
....+..+...+.+.|++++|...|+++...... .| ...++..+..++...|++++|...++++.+.. |+.
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~--~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~ 107 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYPF--SPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLH--PNHPDAD 107 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--chhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC--cCCCchH
Confidence 5667888889999999999999999999886521 11 12467888899999999999999999998763 322
Q ss_pred HhHHHHHHHHHhc--------CCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcChhh
Q 036198 308 STYKEVLEGMCLA--------GKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQT 379 (499)
Q Consensus 308 ~~~~~ll~~~~~~--------g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~ 379 (499)
.++..+..++... |+.++|.+.++.+.+.... +...+..+..... ... ... ..
T Consensus 108 ~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~a~~~~~~----~~~------~~~--------~~ 168 (235)
T TIGR03302 108 YAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPN-SEYAPDAKKRMDY----LRN------RLA--------GK 168 (235)
T ss_pred HHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCC-ChhHHHHHHHHHH----HHH------HHH--------HH
Confidence 1344444555544 7889999999998876322 2222222211110 000 000 11
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHhHCCC--CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHC
Q 036198 380 YNMLISMYFELGEPDGAFETWHEMDKRGC--AQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNK 441 (499)
Q Consensus 380 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~--~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 441 (499)
...+...|.+.|++++|...++...+... +.....+..+..++...|++++|..+++.+...
T Consensus 169 ~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 169 ELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 12455668888999999999988876521 223567888888899999999999988877654
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.40 E-value=0.00086 Score=62.19 Aligned_cols=214 Identities=9% Similarity=0.020 Sum_probs=153.1
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHhhcCCCCChhhHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcC-CHhHHHHH
Q 036198 179 ALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQTLEEMIQMGHAP-DNFTYNTAIDTFCKAR-MVTEAADL 256 (499)
Q Consensus 179 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~~~~~la~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g-~~~~a~~~ 256 (499)
++..+-..+...++.++|+.+++++... .| +..+|+..-.++...| ++++++..
T Consensus 39 a~~~~ra~l~~~e~serAL~lt~~aI~l------------------------nP~~ytaW~~R~~iL~~L~~~l~eeL~~ 94 (320)
T PLN02789 39 AMDYFRAVYASDERSPRALDLTADVIRL------------------------NPGNYTVWHFRRLCLEALDADLEEELDF 94 (320)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHH------------------------CchhHHHHHHHHHHHHHcchhHHHHHHH
Confidence 4555555666778888888888877652 22 3445666666666667 57999999
Q ss_pred HHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCH--HHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 036198 257 FEFMRTKGSTISSPTAKTYAIMIVALVQNDRM--EECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMG 334 (499)
Q Consensus 257 ~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~--~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~ 334 (499)
++++.+.. +-+..+|+.....+.+.|.. ++++.+++.+.+.. +-|..+|+...-++...|+++++++.+++++
T Consensus 95 ~~~~i~~n----pknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I 169 (320)
T PLN02789 95 AEDVAEDN----PKNYQIWHHRRWLAEKLGPDAANKELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLL 169 (320)
T ss_pred HHHHHHHC----CcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 99999876 34566777666666666653 67888888888765 4578888888888889999999999999999
Q ss_pred hCCCCCCHhhHHHHHHHHHHc---CCH----HHHHHHHHHHHHCCCCcChhhHHHHHHHHHhc----CCchHHHHHHHHH
Q 036198 335 NKGYPPDIVTYNCFLKVLCDN---KNG----DEALRLYGRMIEVGCWPSVQTYNMLISMYFEL----GEPDGAFETWHEM 403 (499)
Q Consensus 335 ~~~~~p~~~~~~~li~~~~~~---g~~----~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~----~~~~~a~~~~~~m 403 (499)
+.+.. +..+|+.....+.+. |.. +++.....+++... +-|...|+-+...+... +...+|.+++.+.
T Consensus 170 ~~d~~-N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~-P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~ 247 (320)
T PLN02789 170 EEDVR-NNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILAN-PRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEV 247 (320)
T ss_pred HHCCC-chhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhC-CCCcCHHHHHHHHHhcCCcccccchhHHHHHHHh
Confidence 98765 677777776666554 222 45667776776654 24667888777777763 3446688888877
Q ss_pred hHCCCCCCHHHHHHHHHHHHh
Q 036198 404 DKRGCAQDVDTYCVMIDGLFD 424 (499)
Q Consensus 404 ~~~~~~p~~~~~~~li~~~~~ 424 (499)
.+.+ ..+......|++.|+.
T Consensus 248 ~~~~-~~s~~al~~l~d~~~~ 267 (320)
T PLN02789 248 LSKD-SNHVFALSDLLDLLCE 267 (320)
T ss_pred hccc-CCcHHHHHHHHHHHHh
Confidence 6643 2366778888888875
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.38 E-value=0.00012 Score=63.12 Aligned_cols=119 Identities=13% Similarity=0.145 Sum_probs=51.3
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcChhhHHHHHHHH-HhcCC--chHH
Q 036198 320 AGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMY-FELGE--PDGA 396 (499)
Q Consensus 320 ~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~-~~~~~--~~~a 396 (499)
.++.+++...++...+.+. .+...|..+...|...|++++|...|++..+... .+...+..+..++ ...|+ .++|
T Consensus 52 ~~~~~~~i~~l~~~L~~~P-~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P-~~~~~~~~lA~aL~~~~g~~~~~~A 129 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANP-QNSEQWALLGEYYLWRNDYDNALLAYRQALQLRG-ENAELYAALATVLYYQAGQHMTPQT 129 (198)
T ss_pred chhHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhcCCCCcHHH
Confidence 3334444444444433322 2444444444555555555555555554444321 1333334433332 33333 2445
Q ss_pred HHHHHHHhHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHC
Q 036198 397 FETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNK 441 (499)
Q Consensus 397 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 441 (499)
.+++++..+.+.. +...+..+...+...|++++|...++++.+.
T Consensus 130 ~~~l~~al~~dP~-~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l 173 (198)
T PRK10370 130 REMIDKALALDAN-EVTALMLLASDAFMQADYAQAIELWQKVLDL 173 (198)
T ss_pred HHHHHHHHHhCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 5555544443211 3334444444444445555555555444443
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.36 E-value=3.9e-05 Score=73.11 Aligned_cols=226 Identities=14% Similarity=0.046 Sum_probs=173.1
Q ss_pred HHHHHhcCCHhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhc
Q 036198 241 IDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLA 320 (499)
Q Consensus 241 i~~~~~~g~~~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~ 320 (499)
..-+.+.|++.+|.-.|+...++. +-+...|.-|......+++-..|+..+.+..+.. +-|....-.|.-.|...
T Consensus 292 G~~lm~nG~L~~A~LafEAAVkqd----P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNe 366 (579)
T KOG1125|consen 292 GCNLMKNGDLSEAALAFEAAVKQD----PQHAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNE 366 (579)
T ss_pred HHHHHhcCCchHHHHHHHHHHhhC----hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhh
Confidence 344678899999999999999986 4578999999999999999999999999998874 44667777888889999
Q ss_pred CCHHHHHHHHHHHHhCCCCC--------CHhhHHHHHHHHHHcCCHHHHHHHHHHHH-HCCCCcChhhHHHHHHHHHhcC
Q 036198 321 GKVEEAYKFLEEMGNKGYPP--------DIVTYNCFLKVLCDNKNGDEALRLYGRMI-EVGCWPSVQTYNMLISMYFELG 391 (499)
Q Consensus 321 g~~~~a~~~~~~m~~~~~~p--------~~~~~~~li~~~~~~g~~~~a~~~~~~m~-~~~~~~~~~~~~~li~~~~~~~ 391 (499)
|.-..|++.++..+...++- +...-.. ..+.....+....++|-++. ..+..+|..+...|--.|--.|
T Consensus 367 g~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~ 444 (579)
T KOG1125|consen 367 GLQNQALKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSG 444 (579)
T ss_pred hhHHHHHHHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcch
Confidence 99999999999876543110 0000000 11122223344555665554 4454578888888888889999
Q ss_pred CchHHHHHHHHHhHCCCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHH
Q 036198 392 EPDGAFETWHEMDKRGCAQ-DVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLP-YRKFDSYLMQLSVIGDLGAIHKL 469 (499)
Q Consensus 392 ~~~~a~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~g~~~~a~~~ 469 (499)
++++|.+.|+..... +| |...||.|-..++...+.++|.+.|.+.++.. |+ ++....|.-+|...|.+++|.+.
T Consensus 445 efdraiDcf~~AL~v--~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLq--P~yVR~RyNlgIS~mNlG~ykEA~~h 520 (579)
T KOG1125|consen 445 EFDRAVDCFEAALQV--KPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQ--PGYVRVRYNLGISCMNLGAYKEAVKH 520 (579)
T ss_pred HHHHHHHHHHHHHhc--CCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcC--CCeeeeehhhhhhhhhhhhHHHHHHH
Confidence 999999999998875 44 67799999999999999999999999998764 44 44666777889999999999998
Q ss_pred HHHHHhhc
Q 036198 470 SDHMRKFY 477 (499)
Q Consensus 470 ~~~m~~~~ 477 (499)
|-......
T Consensus 521 lL~AL~mq 528 (579)
T KOG1125|consen 521 LLEALSMQ 528 (579)
T ss_pred HHHHHHhh
Confidence 87766543
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.35 E-value=0.00028 Score=73.04 Aligned_cols=172 Identities=13% Similarity=0.143 Sum_probs=114.9
Q ss_pred CCC-CHHHHHHHHHHHHhCCChHHHHHHHHHhhcCCCCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHh
Q 036198 173 TQP-EINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVT 251 (499)
Q Consensus 173 ~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~~~~~la~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~ 251 (499)
..| +...+..|+..+...|++++|.++.+...+..+-....|-.++. ++....+ . +......++.......++.
T Consensus 26 ~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~-l~~q~~~---~-~~~~lv~~l~~~~~~~~~~ 100 (906)
T PRK14720 26 YSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGI-LSLSRRP---L-NDSNLLNLIDSFSQNLKWA 100 (906)
T ss_pred CCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHH-HHHhhcc---h-hhhhhhhhhhhcccccchh
Confidence 444 56789999999999999999999999665533333333333333 2222221 1 2222226666666666776
Q ss_pred HHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHHHHHHH
Q 036198 252 EAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLE 331 (499)
Q Consensus 252 ~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~ 331 (499)
.+..+...|.+.+ -+..++..+..+|-+.|+.++|.++|+++.+.. +-|..+.|.+...|... ++++|.+++.
T Consensus 101 ~ve~~~~~i~~~~-----~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~ 173 (906)
T PRK14720 101 IVEHICDKILLYG-----ENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYLK 173 (906)
T ss_pred HHHHHHHHHHhhh-----hhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHHH
Confidence 6666666666654 345577778888888888888888888888876 55777788888888888 8888888877
Q ss_pred HHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 036198 332 EMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEV 371 (499)
Q Consensus 332 ~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 371 (499)
+.... +...+++..+.++|.++...
T Consensus 174 KAV~~---------------~i~~kq~~~~~e~W~k~~~~ 198 (906)
T PRK14720 174 KAIYR---------------FIKKKQYVGIEEIWSKLVHY 198 (906)
T ss_pred HHHHH---------------HHhhhcchHHHHHHHHHHhc
Confidence 76554 44455666666666666553
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.34 E-value=0.00022 Score=73.85 Aligned_cols=130 Identities=11% Similarity=0.083 Sum_probs=76.0
Q ss_pred CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC----------
Q 036198 233 DNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSG---------- 302 (499)
Q Consensus 233 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~---------- 302 (499)
+...+..|+..+...+++++|.++.+...+... -....|-.+...+.+.++..++..+ .+...-
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P----~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~~~ve 103 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLKEHK----KSISALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKWAIVE 103 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC----cceehHHHHHHHHHhhcchhhhhhh--hhhhhcccccchhHHH
Confidence 567889999999999999999999998777642 2233333333366666665555544 222210
Q ss_pred --------CCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 036198 303 --------CLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIE 370 (499)
Q Consensus 303 --------~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 370 (499)
..-+...+..+..+|-+.|+.++|..+++++.+... -|+.+.|.+...|+.. ++++|.+++.+...
T Consensus 104 ~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~-~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~ 177 (906)
T PRK14720 104 HICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADR-DNPEIVKKLATSYEEE-DKEKAITYLKKAIY 177 (906)
T ss_pred HHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHh-hHHHHHHHHHHHHH
Confidence 001113334444555555666666666666655542 2555555555555555 66666655555543
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.32 E-value=0.00089 Score=57.52 Aligned_cols=190 Identities=14% Similarity=0.135 Sum_probs=129.6
Q ss_pred cCCHhHHHHHHHHHHHcCCCC-CCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHhHHHH-HHHHHhcCCH
Q 036198 247 ARMVTEAADLFEFMRTKGSTI-SSPTAK-TYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEV-LEGMCLAGKV 323 (499)
Q Consensus 247 ~g~~~~a~~~~~~m~~~~~~~-~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l-l~~~~~~g~~ 323 (499)
..+.++..+++.++....... ..++.. .|..++-+....|+.+.|...++++.+.- |...-...| .-.+-..|.+
T Consensus 25 ~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f--p~S~RV~~lkam~lEa~~~~ 102 (289)
T KOG3060|consen 25 VRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF--PGSKRVGKLKAMLLEATGNY 102 (289)
T ss_pred ccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC--CCChhHHHHHHHHHHHhhch
Confidence 456788888888887643211 334443 34556666777888888888888887662 333222212 2234556888
Q ss_pred HHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcChhhHHHHHHHHHhcCCchHHHHHHHHH
Q 036198 324 EEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEM 403 (499)
Q Consensus 324 ~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m 403 (499)
++|.++++.+.+.+ +.|..++---+...-..|+.-+|++-+.+..+. +..|...|.-+...|...|++++|.-.++++
T Consensus 103 ~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ 180 (289)
T KOG3060|consen 103 KEAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEEL 180 (289)
T ss_pred hhHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHH
Confidence 88888888888876 346677777777777778888888887777764 4568888888888888888888888888888
Q ss_pred hHCCCCC-CHHHHHHHHHHHHhCC---CHHHHHHHHHHHHHCC
Q 036198 404 DKRGCAQ-DVDTYCVMIDGLFDCS---KVEEACFLLEEVVNKG 442 (499)
Q Consensus 404 ~~~~~~p-~~~~~~~li~~~~~~g---~~~~a~~~~~~m~~~~ 442 (499)
.-. .| +...+..+...+...| +...+.+++.+.++..
T Consensus 181 ll~--~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~ 221 (289)
T KOG3060|consen 181 LLI--QPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLN 221 (289)
T ss_pred HHc--CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhC
Confidence 764 34 4445556666555443 4566777787777654
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.26 E-value=0.0066 Score=60.42 Aligned_cols=374 Identities=14% Similarity=0.071 Sum_probs=203.6
Q ss_pred CCCCCHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHHHcCCCc-ccHHHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHH
Q 036198 110 NYAHEPLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVF-VPVDVLLMILKQYTEKIKVKTQPEINALNLLLDALC 188 (499)
Q Consensus 110 ~~~~~~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~li~~~~ 188 (499)
+.+-++.++..+...+.-.. ..++.+++ .++..+.+.-.+. ...+.....+..+.+.....+.-|...|..+--++.
T Consensus 257 ~w~~~~l~ka~l~~~~~~f~-~~~~~Ee~-~Lllli~es~i~Re~~~d~ilslm~~~~k~r~~~~qnd~ai~d~Lt~al~ 334 (799)
T KOG4162|consen 257 SWSLDPLTKARLYKGFALFL-PKSGQEEV-ILLLLIEESLIPRENIEDAILSLMLLLRKLRLKKFQNDAAIFDHLTFALS 334 (799)
T ss_pred ccccchhHHHHHhhcccccC-CCCcHHHH-HHHHHHHhhccccccHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHH
Confidence 33446666666655544211 45666666 3333333322211 112334444445555555566678999999999999
Q ss_pred hCCChHHHHHHHHHhhcCCCCChhhHHHH------------HHHHHHHHHHcCCCCC-HHHHHHHHHHHH-hcCCHhHHH
Q 036198 189 KCGLVDYAETICKRVKNKVKPNANTYNIL------------GMQTLEEMIQMGHAPD-NFTYNTAIDTFC-KARMVTEAA 254 (499)
Q Consensus 189 ~~g~~~~A~~~~~~m~~~~~p~~~~~~~l------------a~~~~~~m~~~g~~p~-~~~~~~li~~~~-~~g~~~~a~ 254 (499)
.+|+++.+.+.|++.....-.....|+.+ |..+++.-......|+ ...+-..-..|. +.|.+++++
T Consensus 335 ~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lmasklc~e~l~~~eegl 414 (799)
T KOG4162|consen 335 RCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLMASKLCIERLKLVEEGL 414 (799)
T ss_pred HHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHHHHHHHHhchhhhhhHH
Confidence 99999999999999776544455555555 5666655544332343 333333333343 345566666
Q ss_pred HHHHHHHHcC-CCCCCCCHHHHHHHHHHHHHcC-----------CHHHHHHHHHHHHHcC-CCcCHHhHHHHHHHHHhcC
Q 036198 255 DLFEFMRTKG-STISSPTAKTYAIMIVALVQND-----------RMEECFSLLGHMINSG-CLPDVSTYKEVLEGMCLAG 321 (499)
Q Consensus 255 ~~~~~m~~~~-~~~~~p~~~~~~~ll~~~~~~~-----------~~~~a~~~~~~m~~~~-~~~~~~~~~~ll~~~~~~g 321 (499)
+.-.+..... ..........|..+.-+|...- ...++++.+++..+.+ ..|+...| +---|+..+
T Consensus 415 dYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~dp~~if~--lalq~A~~R 492 (799)
T KOG4162|consen 415 DYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTDPLVIFY--LALQYAEQR 492 (799)
T ss_pred HHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCCchHHHH--HHHHHHHHH
Confidence 6555554411 0001122333444444433211 1334555555555443 12222222 222345556
Q ss_pred CHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHC-CC---------------------------
Q 036198 322 KVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEV-GC--------------------------- 373 (499)
Q Consensus 322 ~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-~~--------------------------- 373 (499)
+++.|.+..++..+-+-.-+...|..+.-.+...+++.+|+.+.+...+. |.
T Consensus 493 ~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~ 572 (799)
T KOG4162|consen 493 QLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKIHIELTFNDREEALDTCIH 572 (799)
T ss_pred hHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhhhhhhhcccHHHHHHHHHH
Confidence 66666666666665544445666666655555556665555554443221 10
Q ss_pred --------------------------------------------------------------------CcC------hhh
Q 036198 374 --------------------------------------------------------------------WPS------VQT 379 (499)
Q Consensus 374 --------------------------------------------------------------------~~~------~~~ 379 (499)
.|+ ...
T Consensus 573 ~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~l 652 (799)
T KOG4162|consen 573 KLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKL 652 (799)
T ss_pred HHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCcccccCCCCchHHHHHHH
Confidence 000 001
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHhHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 036198 380 YNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSV 459 (499)
Q Consensus 380 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 459 (499)
|......+.+.+..++|...+.+.... ..-....|...-..+...|...+|.+.|......+. -+.....++..++.+
T Consensus 653 wllaa~~~~~~~~~~~a~~CL~Ea~~~-~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP-~hv~s~~Ala~~lle 730 (799)
T KOG4162|consen 653 WLLAADLFLLSGNDDEARSCLLEASKI-DPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDP-DHVPSMTALAELLLE 730 (799)
T ss_pred HHHHHHHHHhcCCchHHHHHHHHHHhc-chhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCC-CCcHHHHHHHHHHHH
Confidence 123334445555555665555555443 122333444444556667788888888887776653 245677788888888
Q ss_pred cCCHHHHHH--HHHHHHhhcChhHHHHHHHHH
Q 036198 460 IGDLGAIHK--LSDHMRKFYNPVIARRLALNQ 489 (499)
Q Consensus 460 ~g~~~~a~~--~~~~m~~~~~~~~~~~~~~~~ 489 (499)
.|+..-|.. ++..+.+.++....-||.+..
T Consensus 731 ~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~ 762 (799)
T KOG4162|consen 731 LGSPRLAEKRSLLSDALRLDPLNHEAWYYLGE 762 (799)
T ss_pred hCCcchHHHHHHHHHHHhhCCCCHHHHHHHHH
Confidence 888877777 888888888877777766644
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.25 E-value=0.0052 Score=59.24 Aligned_cols=123 Identities=12% Similarity=0.042 Sum_probs=69.9
Q ss_pred HHHHHHHHHHHHHCCCCcChhhHHHHHHHHHhcCCchHHHHHHH--------HHhHCCCCCCHHHHHHHHHHHHhCCCHH
Q 036198 358 GDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWH--------EMDKRGCAQDVDTYCVMIDGLFDCSKVE 429 (499)
Q Consensus 358 ~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~--------~m~~~~~~p~~~~~~~li~~~~~~g~~~ 429 (499)
+..+..++....+....-...+.-.++......|+++.|.+++. .+.+.+..|. +...++..+.+.++-+
T Consensus 357 ~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P~--~V~aiv~l~~~~~~~~ 434 (652)
T KOG2376|consen 357 HKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLPG--TVGAIVALYYKIKDND 434 (652)
T ss_pred HhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccChh--HHHHHHHHHHhccCCc
Confidence 34444444444432211223445566667778888888888888 4445444444 4556666666666666
Q ss_pred HHHHHHHHHHHC--CCCCCHHHHHH----HHHHHHhcCCHHHHHHHHHHHHhhcChhHH
Q 036198 430 EACFLLEEVVNK--GLKLPYRKFDS----YLMQLSVIGDLGAIHKLSDHMRKFYNPVIA 482 (499)
Q Consensus 430 ~a~~~~~~m~~~--~~~p~~~~~~~----ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~ 482 (499)
.|..++.+.... .-.+....... +..-=.+.|+.++|..+++++.+.++++.-
T Consensus 435 ~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n~~d~~ 493 (652)
T KOG2376|consen 435 SASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFNPNDTD 493 (652)
T ss_pred cHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhCCchHH
Confidence 666666555421 00111122222 223335668888888888888887776554
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.22 E-value=0.00023 Score=61.50 Aligned_cols=131 Identities=14% Similarity=0.036 Sum_probs=96.3
Q ss_pred CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHhHHH
Q 036198 233 DNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKE 312 (499)
Q Consensus 233 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ 312 (499)
|....+..+....+.|++..|...|++..... ++|..+|+.+.-+|.+.|+++.|..-|.+..+.. .-+...++.
T Consensus 99 d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~----p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~-~~~p~~~nN 173 (257)
T COG5010 99 DRELLAAQGKNQIRNGNFGEAVSVLRKAARLA----PTDWEAWNLLGAALDQLGRFDEARRAYRQALELA-PNEPSIANN 173 (257)
T ss_pred cHHHHHHHHHHHHHhcchHHHHHHHHHHhccC----CCChhhhhHHHHHHHHccChhHHHHHHHHHHHhc-cCCchhhhh
Confidence 55566667777888888888888888877764 6778888888888888888888888888877763 334566777
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHH
Q 036198 313 VLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMI 369 (499)
Q Consensus 313 ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 369 (499)
+.-.+.-.|+.+.|..++......+.. |...-..+..+....|++++|..+...-.
T Consensus 174 lgms~~L~gd~~~A~~lll~a~l~~~a-d~~v~~NLAl~~~~~g~~~~A~~i~~~e~ 229 (257)
T COG5010 174 LGMSLLLRGDLEDAETLLLPAYLSPAA-DSRVRQNLALVVGLQGDFREAEDIAVQEL 229 (257)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhCCCC-chHHHHHHHHHHhhcCChHHHHhhccccc
Confidence 777777788888888888777665433 56666677777777888888877765543
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.22 E-value=0.0001 Score=59.95 Aligned_cols=95 Identities=6% Similarity=-0.047 Sum_probs=63.0
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHH
Q 036198 237 YNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEG 316 (499)
Q Consensus 237 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~ 316 (499)
+..+...+...|++++|...|+...... +.+...|..+..++...|++++|...|+...+.. +.+...+..+..+
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~----P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~-p~~~~a~~~lg~~ 101 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMAQ----PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD-ASHPEPVYQTGVC 101 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcC----CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHH
Confidence 4455666667777777777777766654 4456666667777777777777777777776653 3455666666666
Q ss_pred HHhcCCHHHHHHHHHHHHhC
Q 036198 317 MCLAGKVEEAYKFLEEMGNK 336 (499)
Q Consensus 317 ~~~~g~~~~a~~~~~~m~~~ 336 (499)
+...|++++|.+.|+...+.
T Consensus 102 l~~~g~~~eAi~~~~~Al~~ 121 (144)
T PRK15359 102 LKMMGEPGLAREAFQTAIKM 121 (144)
T ss_pred HHHcCCHHHHHHHHHHHHHh
Confidence 77777777777777766654
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.21 E-value=0.00095 Score=68.40 Aligned_cols=183 Identities=7% Similarity=0.017 Sum_probs=141.5
Q ss_pred CCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHh
Q 036198 230 HAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVST 309 (499)
Q Consensus 230 ~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~ 309 (499)
...++..+-.|.......|..++|+.+++...+.. +-+......+...+.+.+++++|+..+++..+.. +-+...
T Consensus 82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~----Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~-p~~~~~ 156 (694)
T PRK15179 82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRF----PDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGG-SSSARE 156 (694)
T ss_pred ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC----CCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC-CCCHHH
Confidence 45578899999999999999999999999999874 4456778888999999999999999999999874 445666
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcChhhHHHHHHHHHh
Q 036198 310 YKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFE 389 (499)
Q Consensus 310 ~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~ 389 (499)
...+..++.+.|++++|..+|++....+. -+..++..+..++-..|+.++|...|+...+.. .+....|+.++.
T Consensus 157 ~~~~a~~l~~~g~~~~A~~~y~~~~~~~p-~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~-~~~~~~~~~~~~---- 230 (694)
T PRK15179 157 ILLEAKSWDEIGQSEQADACFERLSRQHP-EFENGYVGWAQSLTRRGALWRARDVLQAGLDAI-GDGARKLTRRLV---- 230 (694)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh-CcchHHHHHHHH----
Confidence 77788889999999999999999998432 357889999999999999999999999988753 255566665443
Q ss_pred cCCchHHHHHHHHHhHC----CCCCCHHHHHHHHHHHHhC
Q 036198 390 LGEPDGAFETWHEMDKR----GCAQDVDTYCVMIDGLFDC 425 (499)
Q Consensus 390 ~~~~~~a~~~~~~m~~~----~~~p~~~~~~~li~~~~~~ 425 (499)
++..-..+++.+.-. |..........+|.-|.+.
T Consensus 231 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (694)
T PRK15179 231 --DLNADLAALRRLGVEGDGRDVPVSILVLEKMLQEIGRR 268 (694)
T ss_pred --HHHHHHHHHHHcCcccccCCCceeeeeHHHHHHHHhhc
Confidence 334445566665432 3334445566666666543
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.21 E-value=0.00031 Score=60.70 Aligned_cols=159 Identities=10% Similarity=-0.039 Sum_probs=104.3
Q ss_pred HHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHH
Q 036198 238 NTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGM 317 (499)
Q Consensus 238 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~ 317 (499)
..+-..+.-.|+-+....+........ +-|....+..+....+.|++..|...+++..... ++|...|+.+--+|
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~----~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaal 144 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIAY----PKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAAL 144 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhccC----cccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHH
Confidence 445555666666666666666544432 3345555567777777777777777777776553 66777777777777
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcChhhHHHHHHHHHhcCCchHHH
Q 036198 318 CLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAF 397 (499)
Q Consensus 318 ~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~ 397 (499)
.+.|+.+.|..-|.+..+.... +...++.+.-.+.-.|+.+.|..++......+. -|...-..+.......|++++|.
T Consensus 145 dq~Gr~~~Ar~ay~qAl~L~~~-~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~-ad~~v~~NLAl~~~~~g~~~~A~ 222 (257)
T COG5010 145 DQLGRFDEARRAYRQALELAPN-EPSIANNLGMSLLLRGDLEDAETLLLPAYLSPA-ADSRVRQNLALVVGLQGDFREAE 222 (257)
T ss_pred HHccChhHHHHHHHHHHHhccC-CchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCC-CchHHHHHHHHHHhhcCChHHHH
Confidence 7777777777777776665332 555666676667777777777777777666542 35555666666667777777777
Q ss_pred HHHHHH
Q 036198 398 ETWHEM 403 (499)
Q Consensus 398 ~~~~~m 403 (499)
++...-
T Consensus 223 ~i~~~e 228 (257)
T COG5010 223 DIAVQE 228 (257)
T ss_pred hhcccc
Confidence 766543
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.18 E-value=0.0078 Score=58.11 Aligned_cols=413 Identities=12% Similarity=0.097 Sum_probs=225.8
Q ss_pred ccCccchhhccCCccccccccccCCCcchHHHHHHHHHhccCCCchHHHHHhhCCCCCCHHH-----HHHHHHccC-CCh
Q 036198 22 RTKSLQSYIGKVPSLVCKVFDESSDSVSDVAKLYEAIIDNSNAYDNMEKALDSLGVPLTTDS-----VVGVLQRFQ-FEE 95 (499)
Q Consensus 22 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~al~~~~~~~~~~~-----~~~~l~~~~-~~~ 95 (499)
..+++..+.+....++. ..|.+...+..-+-++.+.+.+++||........... +...+...+ +..
T Consensus 24 ~~~e~e~a~k~~~Kil~--------~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~~~~fEKAYc~Yrlnk~ 95 (652)
T KOG2376|consen 24 KNGEYEEAVKTANKILS--------IVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVINSFFFEKAYCEYRLNKL 95 (652)
T ss_pred cchHHHHHHHHHHHHHh--------cCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcchhhHHHHHHHHHcccH
Confidence 55555556655554332 3345555566666677888999999854332221111 233332222 233
Q ss_pred HHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHHh-----hh
Q 036198 96 KIAFRFFMWAGHQDNYAHEPLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLMILKQYTEK-----IK 170 (499)
Q Consensus 96 ~~a~~~f~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~l~~~~~~-----~~ 170 (499)
+-|+...+-... .|..+...-...|- +.|++++|..+|+++.+++...-+......++.+-... ..
T Consensus 96 Dealk~~~~~~~-----~~~~ll~L~AQvlY----rl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~ 166 (652)
T KOG2376|consen 96 DEALKTLKGLDR-----LDDKLLELRAQVLY----RLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQS 166 (652)
T ss_pred HHHHHHHhcccc-----cchHHHHHHHHHHH----HHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHh
Confidence 455555542211 13334444455566 99999999999999988885433333333333322211 11
Q ss_pred cCCCCCHHHHHHHHHH---HHhCCChHHHHHHHHHhhc----CCCCChhhHHHHHHHHHHHHHHcCCCCCHH-HHHHHHH
Q 036198 171 VKTQPEINALNLLLDA---LCKCGLVDYAETICKRVKN----KVKPNANTYNILGMQTLEEMIQMGHAPDNF-TYNTAID 242 (499)
Q Consensus 171 ~~~~~~~~~~~~li~~---~~~~g~~~~A~~~~~~m~~----~~~p~~~~~~~la~~~~~~m~~~g~~p~~~-~~~~li~ 242 (499)
....| ..+|..+.+. +...|++.+|+++++.... .+..+... +.++.-+.. .-.-+..
T Consensus 167 v~~v~-e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~-------------eEeie~el~~IrvQlay 232 (652)
T KOG2376|consen 167 VPEVP-EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTN-------------EEEIEEELNPIRVQLAY 232 (652)
T ss_pred ccCCC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccc-------------hhhHHHHHHHHHHHHHH
Confidence 12222 3355555553 3457999999999988722 10000000 001111111 1123445
Q ss_pred HHHhcCCHhHHHHHHHHHHHcCCCCCCCCHHH----HHHHHHHHHHcCCHH----------------HHHHHH-------
Q 036198 243 TFCKARMVTEAADLFEFMRTKGSTISSPTAKT----YAIMIVALVQNDRME----------------ECFSLL------- 295 (499)
Q Consensus 243 ~~~~~g~~~~a~~~~~~m~~~~~~~~~p~~~~----~~~ll~~~~~~~~~~----------------~a~~~~------- 295 (499)
.+-..|+-++|..++....+.. .+|... -|.++..-....-++ .++.-+
T Consensus 233 VlQ~~Gqt~ea~~iy~~~i~~~----~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~ 308 (652)
T KOG2376|consen 233 VLQLQGQTAEASSIYVDIIKRN----PADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQA 308 (652)
T ss_pred HHHHhcchHHHHHHHHHHHHhc----CCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 5677888888888888887775 233211 122221110000000 000000
Q ss_pred -------------------HHHHHcCCCcCHHhHHHHHHHHHhc--CCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHH
Q 036198 296 -------------------GHMINSGCLPDVSTYKEVLEGMCLA--GKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCD 354 (499)
Q Consensus 296 -------------------~~m~~~~~~~~~~~~~~ll~~~~~~--g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~ 354 (499)
+.............+.+++..+.+. .....+.+++...-+....-...+.-.++.....
T Consensus 309 i~~N~~lL~l~tnk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is 388 (652)
T KOG2376|consen 309 IYRNNALLALFTNKMDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKIS 388 (652)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHh
Confidence 0000110011123444444443322 2456677777666554322234556667777889
Q ss_pred cCCHHHHHHHHH--------HHHHCCCCcChhhHHHHHHHHHhcCCchHHHHHHHHHhHC--CCCCCHHHHHHHHH----
Q 036198 355 NKNGDEALRLYG--------RMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKR--GCAQDVDTYCVMID---- 420 (499)
Q Consensus 355 ~g~~~~a~~~~~--------~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~--~~~p~~~~~~~li~---- 420 (499)
.|+++.|.+++. .+.+.+..|. +...+...+.+.++.+.|..++.+.... .-.+.......++.
T Consensus 389 ~gn~~~A~~il~~~~~~~~ss~~~~~~~P~--~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~ 466 (652)
T KOG2376|consen 389 QGNPEVALEILSLFLESWKSSILEAKHLPG--TVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAE 466 (652)
T ss_pred cCCHHHHHHHHHHHhhhhhhhhhhhccChh--HHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhH
Confidence 999999999999 5555554454 4456777778888888888888776542 11222233333333
Q ss_pred HHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 036198 421 GLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHM 473 (499)
Q Consensus 421 ~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m 473 (499)
.-.+.|+.++|..+++++.+.. ++|..+...++.+|++. |.+.|..+-..+
T Consensus 467 f~lr~G~~~ea~s~leel~k~n-~~d~~~l~~lV~a~~~~-d~eka~~l~k~L 517 (652)
T KOG2376|consen 467 FKLRHGNEEEASSLLEELVKFN-PNDTDLLVQLVTAYARL-DPEKAESLSKKL 517 (652)
T ss_pred HHHhcCchHHHHHHHHHHHHhC-CchHHHHHHHHHHHHhc-CHHHHHHHhhcC
Confidence 3346899999999999999875 46899999999999875 566777665554
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.17 E-value=0.00015 Score=63.50 Aligned_cols=233 Identities=9% Similarity=0.104 Sum_probs=158.5
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHH
Q 036198 229 GHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVS 308 (499)
Q Consensus 229 g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~ 308 (499)
|+.....-+++++..+.+..++++|++++....++. +.+....+.+..+|-...++..|-..|+++... .|...
T Consensus 5 g~~i~EGeftaviy~lI~d~ry~DaI~~l~s~~Er~----p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~ 78 (459)
T KOG4340|consen 5 GAQIPEGEFTAVVYRLIRDARYADAIQLLGSELERS----PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELE 78 (459)
T ss_pred cccCCCCchHHHHHHHHHHhhHHHHHHHHHHHHhcC----ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHH
Confidence 344344457778888889999999999998887775 347778888888999999999999999999876 56666
Q ss_pred hHHHH-HHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHH--HHcCCHHHHHHHHHHHHHCCCCcChhhHHHHHH
Q 036198 309 TYKEV-LEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVL--CDNKNGDEALRLYGRMIEVGCWPSVQTYNMLIS 385 (499)
Q Consensus 309 ~~~~l-l~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~--~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~ 385 (499)
-|... ...+.+.+.+..|+.+...|... |+...-..-+.+- ...+++-.+..+.++.-..| +..+.+....
T Consensus 79 qYrlY~AQSLY~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gC 152 (459)
T KOG4340|consen 79 QYRLYQAQSLYKACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGC 152 (459)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchh
Confidence 66543 35677888899999999888764 2322222222222 34677777887777765332 3344444444
Q ss_pred HHHhcCCchHHHHHHHHHhHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCC-------------CCHH----
Q 036198 386 MYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLK-------------LPYR---- 448 (499)
Q Consensus 386 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~-------------p~~~---- 448 (499)
...+.|+++.|.+-|+...+.+---....|+.-+..| +.|+.+.|+++..++.+.|++ ||..
T Consensus 153 llykegqyEaAvqkFqaAlqvsGyqpllAYniALaHy-~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgN 231 (459)
T KOG4340|consen 153 LLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLALAHY-SSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGN 231 (459)
T ss_pred eeeccccHHHHHHHHHHHHhhcCCCchhHHHHHHHHH-hhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccc
Confidence 4567888899988888877653333455677666555 457888888888888877654 2221
Q ss_pred ----HHHHHH-------HHHHhcCCHHHHHHHHHHHH
Q 036198 449 ----KFDSYL-------MQLSVIGDLGAIHKLSDHMR 474 (499)
Q Consensus 449 ----~~~~ll-------~~~~~~g~~~~a~~~~~~m~ 474 (499)
.-..++ ..+.+.|+.+.|.+.+-.|.
T Consensus 232 t~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmP 268 (459)
T KOG4340|consen 232 TLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMP 268 (459)
T ss_pred hHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCC
Confidence 112233 33456788888888887775
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.16 E-value=0.00017 Score=62.04 Aligned_cols=119 Identities=5% Similarity=0.096 Sum_probs=73.8
Q ss_pred cCCHhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHH-HhcCC--H
Q 036198 247 ARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGM-CLAGK--V 323 (499)
Q Consensus 247 ~g~~~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~-~~~g~--~ 323 (499)
.++.+++...++...+.. +.+...|..+...|...|++++|...|++..+.. +.+...+..+..++ ...|+ .
T Consensus 52 ~~~~~~~i~~l~~~L~~~----P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~ 126 (198)
T PRK10370 52 QQTPEAQLQALQDKIRAN----PQNSEQWALLGEYYLWRNDYDNALLAYRQALQLR-GENAELYAALATVLYYQAGQHMT 126 (198)
T ss_pred chhHHHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCc
Confidence 445566666666665553 4566667777777777777777777777666653 33455555555543 45555 3
Q ss_pred HHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 036198 324 EEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEV 371 (499)
Q Consensus 324 ~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 371 (499)
++|.+++++..+.+.. +..++..+...+.+.|++++|...|+++.+.
T Consensus 127 ~~A~~~l~~al~~dP~-~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l 173 (198)
T PRK10370 127 PQTREMIDKALALDAN-EVTALMLLASDAFMQADYAQAIELWQKVLDL 173 (198)
T ss_pred HHHHHHHHHHHHhCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 6677777766666433 5566666666666677777777777766654
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.15 E-value=0.0015 Score=61.55 Aligned_cols=185 Identities=16% Similarity=0.135 Sum_probs=115.8
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHH
Q 036198 269 SPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCF 348 (499)
Q Consensus 269 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l 348 (499)
.|+...+...+.+......-..+..++....+. .-...-|..- -.+...|++++|+..++.+...- +-|...+...
T Consensus 271 ~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~--~~~aa~YG~A-~~~~~~~~~d~A~~~l~~L~~~~-P~N~~~~~~~ 346 (484)
T COG4783 271 SPDFQLARARIRAKYEALPNQQAADLLAKRSKR--GGLAAQYGRA-LQTYLAGQYDEALKLLQPLIAAQ-PDNPYYLELA 346 (484)
T ss_pred CccHHHHHHHHHHHhccccccchHHHHHHHhCc--cchHHHHHHH-HHHHHhcccchHHHHHHHHHHhC-CCCHHHHHHH
Confidence 455555555555544433333333333222221 1122223322 33556778888888888877653 3355566666
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCcC-hhhHHHHHHHHHhcCCchHHHHHHHHHhHCCCCCCHHHHHHHHHHHHhCCC
Q 036198 349 LKVLCDNKNGDEALRLYGRMIEVGCWPS-VQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSK 427 (499)
Q Consensus 349 i~~~~~~g~~~~a~~~~~~m~~~~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 427 (499)
...+.+.++.++|.+.++.+.... |+ ....-.+..++.+.|+..+|..+++..... .+-|+..|..|.++|...|+
T Consensus 347 ~~i~~~~nk~~~A~e~~~kal~l~--P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~-~p~dp~~w~~LAqay~~~g~ 423 (484)
T COG4783 347 GDILLEANKAKEAIERLKKALALD--PNSPLLQLNLAQALLKGGKPQEAIRILNRYLFN-DPEDPNGWDLLAQAYAELGN 423 (484)
T ss_pred HHHHHHcCChHHHHHHHHHHHhcC--CCccHHHHHHHHHHHhcCChHHHHHHHHHHhhc-CCCCchHHHHHHHHHHHhCc
Confidence 677888888888888888887743 55 445556777788888888888888877655 24467788888888888887
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcC
Q 036198 428 VEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHMRKFYN 478 (499)
Q Consensus 428 ~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~ 478 (499)
..++..-..+ +|...|+++.|...+....+...
T Consensus 424 ~~~a~~A~AE------------------~~~~~G~~~~A~~~l~~A~~~~~ 456 (484)
T COG4783 424 RAEALLARAE------------------GYALAGRLEQAIIFLMRASQQVK 456 (484)
T ss_pred hHHHHHHHHH------------------HHHhCCCHHHHHHHHHHHHHhcc
Confidence 7776655443 35556777777777777666553
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.14 E-value=0.0079 Score=65.47 Aligned_cols=234 Identities=12% Similarity=0.057 Sum_probs=152.2
Q ss_pred HHHHHHhcCCHhHHHHHHHHHHHcCCCCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC---Cc--CHHhH
Q 036198 240 AIDTFCKARMVTEAADLFEFMRTKGSTISSPT----AKTYAIMIVALVQNDRMEECFSLLGHMINSGC---LP--DVSTY 310 (499)
Q Consensus 240 li~~~~~~g~~~~a~~~~~~m~~~~~~~~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~---~~--~~~~~ 310 (499)
+...+...|++++|...+++..... ...+ ....+.+...+...|++++|...+.+.....- .+ ...++
T Consensus 458 ~a~~~~~~g~~~~A~~~~~~al~~~---~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~ 534 (903)
T PRK04841 458 RAQVAINDGDPEEAERLAELALAEL---PLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSL 534 (903)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcC---CCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHH
Confidence 3355668999999999999887642 1112 23445666677889999999999988864311 11 12344
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhC----CCC--C-CHhhHHHHHHHHHHcCCHHHHHHHHHHHHHC--CCCc--Chhh
Q 036198 311 KEVLEGMCLAGKVEEAYKFLEEMGNK----GYP--P-DIVTYNCFLKVLCDNKNGDEALRLYGRMIEV--GCWP--SVQT 379 (499)
Q Consensus 311 ~~ll~~~~~~g~~~~a~~~~~~m~~~----~~~--p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--~~~~--~~~~ 379 (499)
..+...+...|++++|...+++.... +.. + ....+..+...+...|++++|...+.+.... ...+ ....
T Consensus 535 ~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~ 614 (903)
T PRK04841 535 LQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQC 614 (903)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHH
Confidence 55667788999999999998875442 221 1 2233445556677789999999999887642 1112 2334
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHhHCC--CCCCHH--HH--HHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC---HHHH
Q 036198 380 YNMLISMYFELGEPDGAFETWHEMDKRG--CAQDVD--TY--CVMIDGLFDCSKVEEACFLLEEVVNKGLKLP---YRKF 450 (499)
Q Consensus 380 ~~~li~~~~~~~~~~~a~~~~~~m~~~~--~~p~~~--~~--~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~---~~~~ 450 (499)
+..+...+...|+.+.|.+.+....... ...... .. ...+..+...|+.+.|..++........... ...+
T Consensus 615 ~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~ 694 (903)
T PRK04841 615 LAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQW 694 (903)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHH
Confidence 5556667888999999999998875421 111111 10 1122444568999999999877554221111 1123
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhh
Q 036198 451 DSYLMQLSVIGDLGAIHKLSDHMRKF 476 (499)
Q Consensus 451 ~~ll~~~~~~g~~~~a~~~~~~m~~~ 476 (499)
..+..++...|+.++|...+++..+.
T Consensus 695 ~~~a~~~~~~g~~~~A~~~l~~al~~ 720 (903)
T PRK04841 695 RNIARAQILLGQFDEAEIILEELNEN 720 (903)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 45667888999999999999998775
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.11 E-value=0.0099 Score=56.84 Aligned_cols=117 Identities=12% Similarity=0.097 Sum_probs=86.1
Q ss_pred HHHHHHHHHHHHHCCCCcChhhHHHHHHHHHhcCCchHHHHHHHHHhHCCCCC-CHHHHHHHHHHHHhCCCHHHHHHHHH
Q 036198 358 GDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQ-DVDTYCVMIDGLFDCSKVEEACFLLE 436 (499)
Q Consensus 358 ~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~ 436 (499)
.+.....++++...-..--..+|..+|+.-.+...+..|..+|.+.++.+..+ ++..+++++.-+|. ++.+-|..+|+
T Consensus 347 ~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cs-kD~~~AfrIFe 425 (656)
T KOG1914|consen 347 EKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCS-KDKETAFRIFE 425 (656)
T ss_pred hhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhc-CChhHHHHHHH
Confidence 44555666666543222234578888999889999999999999999987776 88889999998886 77788999998
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 036198 437 EVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHMRKF 476 (499)
Q Consensus 437 ~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~ 476 (499)
--+++ +.-++.--...++-+...++-..+..+|++....
T Consensus 426 LGLkk-f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s 464 (656)
T KOG1914|consen 426 LGLKK-FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTS 464 (656)
T ss_pred HHHHh-cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhc
Confidence 65544 1234445556677777778877888888887766
|
|
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=98.11 E-value=5.6e-06 Score=48.73 Aligned_cols=31 Identities=39% Similarity=0.685 Sum_probs=12.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCc
Q 036198 345 YNCFLKVLCDNKNGDEALRLYGRMIEVGCWP 375 (499)
Q Consensus 345 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~ 375 (499)
|+++|.+|++.|++++|.++|++|.+.|+.|
T Consensus 3 ~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p 33 (35)
T TIGR00756 3 YNTLIDGLCKAGRVEEALELFKEMLERGIEP 33 (35)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCC
Confidence 3344444444444444444444444333333
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.11 E-value=0.0031 Score=60.62 Aligned_cols=155 Identities=19% Similarity=0.108 Sum_probs=106.3
Q ss_pred CCC-CHHHHHHHHHHHHhCCChHHHHHHHHHhhcC-------C-------------CCChhhHHHHHHHHHHHHHHcCCC
Q 036198 173 TQP-EINALNLLLDALCKCGLVDYAETICKRVKNK-------V-------------KPNANTYNILGMQTLEEMIQMGHA 231 (499)
Q Consensus 173 ~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-------~-------------~p~~~~~~~la~~~~~~m~~~g~~ 231 (499)
+.| +..+.-+|.-.|...|.-..|..+++..... . .++...+.-+...+++.....+..
T Consensus 348 LdP~NleaLmaLAVSytNeg~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~ 427 (579)
T KOG1125|consen 348 LDPTNLEALMALAVSYTNEGLQNQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTK 427 (579)
T ss_pred cCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCC
Confidence 345 5678888888899999999999998886321 0 022222333344444555555656
Q ss_pred CCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcC-HHhH
Q 036198 232 PDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPD-VSTY 310 (499)
Q Consensus 232 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~ 310 (499)
+|..+...|.-.|--.|++++|.+.|+..+... +-|...||-|...++...+.++|...|++.++. .|+ +.+.
T Consensus 428 ~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~----Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqL--qP~yVR~R 501 (579)
T KOG1125|consen 428 IDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVK----PNDYLLWNRLGATLANGNRSEEAISAYNRALQL--QPGYVRVR 501 (579)
T ss_pred CChhHHhhhHHHHhcchHHHHHHHHHHHHHhcC----CchHHHHHHhhHHhcCCcccHHHHHHHHHHHhc--CCCeeeee
Confidence 777777778778888888888888888877754 346677888888888888888888888888776 344 2333
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHH
Q 036198 311 KEVLEGMCLAGKVEEAYKFLEEM 333 (499)
Q Consensus 311 ~~ll~~~~~~g~~~~a~~~~~~m 333 (499)
..|.-.|...|.+.+|.+.|-..
T Consensus 502 yNlgIS~mNlG~ykEA~~hlL~A 524 (579)
T KOG1125|consen 502 YNLGISCMNLGAYKEAVKHLLEA 524 (579)
T ss_pred hhhhhhhhhhhhHHHHHHHHHHH
Confidence 44555677788888887776553
|
|
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=98.09 E-value=7.2e-06 Score=48.26 Aligned_cols=33 Identities=39% Similarity=0.676 Sum_probs=22.4
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC
Q 036198 414 TYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLP 446 (499)
Q Consensus 414 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~ 446 (499)
+|+.+|.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 566666666666666666666666666666665
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.09 E-value=0.0015 Score=65.15 Aligned_cols=220 Identities=16% Similarity=0.113 Sum_probs=133.0
Q ss_pred CHHHHHHHHHHHHhCCChHHHHHHHHHhhcCCCCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHH
Q 036198 176 EINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAAD 255 (499)
Q Consensus 176 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~~~~~la~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~ 255 (499)
+..+|..+.++|.+..++|-|.-.+-.|.+-- ....+++..+.|- .+=..+.-.....|.+++|+.
T Consensus 756 S~~vW~nmA~McVkT~RLDVAkVClGhm~~aR----------gaRAlR~a~q~~~----e~eakvAvLAieLgMlEeA~~ 821 (1416)
T KOG3617|consen 756 SDSVWDNMASMCVKTRRLDVAKVCLGHMKNAR----------GARALRRAQQNGE----EDEAKVAVLAIELGMLEEALI 821 (1416)
T ss_pred hhHHHHHHHHHhhhhccccHHHHhhhhhhhhh----------hHHHHHHHHhCCc----chhhHHHHHHHHHhhHHHHHH
Confidence 34589999999999999999999888887510 1223334433332 222334444566788899998
Q ss_pred HHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 036198 256 LFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGN 335 (499)
Q Consensus 256 ~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~ 335 (499)
+|.+....+ .|=+.|-..|.|++|+++-+.=-+. --..||..-..-+-..++.+.|++.|++...
T Consensus 822 lYr~ckR~D------------LlNKlyQs~g~w~eA~eiAE~~DRi---HLr~Tyy~yA~~Lear~Di~~AleyyEK~~~ 886 (1416)
T KOG3617|consen 822 LYRQCKRYD------------LLNKLYQSQGMWSEAFEIAETKDRI---HLRNTYYNYAKYLEARRDIEAALEYYEKAGV 886 (1416)
T ss_pred HHHHHHHHH------------HHHHHHHhcccHHHHHHHHhhccce---ehhhhHHHHHHHHHhhccHHHHHHHHHhcCC
Confidence 888776533 3445667788888888776543222 1234555555556666777777777764321
Q ss_pred C----------C---------CCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcChhhHHHHHHHHHhcCCchHH
Q 036198 336 K----------G---------YPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGA 396 (499)
Q Consensus 336 ~----------~---------~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a 396 (499)
. . -..|...|.--...+-..|+.+.|+.+|..... |-++++..|-+|+.++|
T Consensus 887 hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~fs~VrI~C~qGk~~kA 957 (1416)
T KOG3617|consen 887 HAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD---------YFSMVRIKCIQGKTDKA 957 (1416)
T ss_pred hHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh---------hhhheeeEeeccCchHH
Confidence 1 0 011333444444455556777777776665432 34455555666777777
Q ss_pred HHHHHHHhHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 036198 397 FETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVV 439 (499)
Q Consensus 397 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 439 (499)
-++-++- -|....-.+.+.|-..|++.+|..+|.+..
T Consensus 958 a~iA~es------gd~AAcYhlaR~YEn~g~v~~Av~FfTrAq 994 (1416)
T KOG3617|consen 958 ARIAEES------GDKAACYHLARMYENDGDVVKAVKFFTRAQ 994 (1416)
T ss_pred HHHHHhc------ccHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 6666552 244445556677777777777777766543
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.09 E-value=0.0013 Score=67.48 Aligned_cols=186 Identities=11% Similarity=0.008 Sum_probs=144.8
Q ss_pred hhcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHhhcCCCCChhhHHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhc
Q 036198 169 IKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQTLEEMIQMGHAPD-NFTYNTAIDTFCKA 247 (499)
Q Consensus 169 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~~~~~la~~~~~~m~~~g~~p~-~~~~~~li~~~~~~ 247 (499)
..+..+.+...+-.|.......|.+++|..+++...+ +.|| ......+...+.+.
T Consensus 78 ~~~~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~------------------------~~Pd~~~a~~~~a~~L~~~ 133 (694)
T PRK15179 78 YVRRYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQ------------------------RFPDSSEAFILMLRGVKRQ 133 (694)
T ss_pred HHHhccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHh------------------------hCCCcHHHHHHHHHHHHHh
Confidence 4456677789999999999999999999999998876 4565 55778888999999
Q ss_pred CCHhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHHH
Q 036198 248 RMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAY 327 (499)
Q Consensus 248 g~~~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~ 327 (499)
+++++|+..+++..... +-+......+..++.+.|++++|..+|+++...+ +-+..++..+-.++...|+.++|.
T Consensus 134 ~~~eeA~~~~~~~l~~~----p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~ 208 (694)
T PRK15179 134 QGIEAGRAEIELYFSGG----SSSAREILLEAKSWDEIGQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRAR 208 (694)
T ss_pred ccHHHHHHHHHHHhhcC----CCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHH
Confidence 99999999999999986 4567788888889999999999999999999843 455889999999999999999999
Q ss_pred HHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCC----CCcChhhHHHHHHHHHhc
Q 036198 328 KFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVG----CWPSVQTYNMLISMYFEL 390 (499)
Q Consensus 328 ~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~----~~~~~~~~~~li~~~~~~ 390 (499)
..|+...+.. .+....|+..+. +...-...++++.-.+ ..........+|.-|.+.
T Consensus 209 ~~~~~a~~~~-~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (694)
T PRK15179 209 DVLQAGLDAI-GDGARKLTRRLV------DLNADLAALRRLGVEGDGRDVPVSILVLEKMLQEIGRR 268 (694)
T ss_pred HHHHHHHHhh-CcchHHHHHHHH------HHHHHHHHHHHcCcccccCCCceeeeeHHHHHHHHhhc
Confidence 9999987762 345556655443 3344556666665433 222344555666666654
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.08 E-value=0.006 Score=58.21 Aligned_cols=168 Identities=16% Similarity=0.116 Sum_probs=104.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcChhhH-------HHH
Q 036198 311 KEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTY-------NML 383 (499)
Q Consensus 311 ~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~-------~~l 383 (499)
..+.++..+..+++.|.+-+....+.. -+..-++..-.+|...|.+..+...-....+.|.. ...-| ..+
T Consensus 228 k~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~ 304 (539)
T KOG0548|consen 228 KELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARL 304 (539)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHh
Confidence 345566667777788888777776654 24445555666777777777766666655554421 11122 223
Q ss_pred HHHHHhcCCchHHHHHHHHHhHCCCCCCHHH-------------------------HHHHHHHHHhCCCHHHHHHHHHHH
Q 036198 384 ISMYFELGEPDGAFETWHEMDKRGCAQDVDT-------------------------YCVMIDGLFDCSKVEEACFLLEEV 438 (499)
Q Consensus 384 i~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~-------------------------~~~li~~~~~~g~~~~a~~~~~~m 438 (499)
-.+|.+.++++.|...|.+.......|+... ...-...+.+.|++..|...+.++
T Consensus 305 g~a~~k~~~~~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteA 384 (539)
T KOG0548|consen 305 GNAYTKREDYEGAIKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEA 384 (539)
T ss_pred hhhhhhHHhHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence 3355556677777777776554333333211 011133456778888888888888
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcChhHH
Q 036198 439 VNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHMRKFYNPVIA 482 (499)
Q Consensus 439 ~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~ 482 (499)
++.. +-|...|..-.-+|.+.|.+..|.+=.+.-.+..+..+-
T Consensus 385 Ikr~-P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~k 427 (539)
T KOG0548|consen 385 IKRD-PEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIK 427 (539)
T ss_pred HhcC-CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHH
Confidence 8877 347778888888888888888888777777666555443
|
|
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=98.07 E-value=6.6e-05 Score=71.26 Aligned_cols=124 Identities=13% Similarity=0.124 Sum_probs=90.2
Q ss_pred CCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhC--CCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcChhh
Q 036198 302 GCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNK--GYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQT 379 (499)
Q Consensus 302 ~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~--~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~ 379 (499)
+.+.+......+++.+....+.+.+..++...... ....-..|..+++..|.+.|..+.+..++..=...|+.||..+
T Consensus 61 ~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s 140 (429)
T PF10037_consen 61 KKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFS 140 (429)
T ss_pred CCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhh
Confidence 44566677777777777777778888777776654 2222234556788888888888888888887777788888888
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHhHCCCCCCHHHHHHHHHHHHhC
Q 036198 380 YNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDC 425 (499)
Q Consensus 380 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 425 (499)
+|.||..+.+.|++..|.++...|...+...+..|+...+.+|.+.
T Consensus 141 ~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 141 FNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 8888888888888888888888777666666667777666666655
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.07 E-value=0.0082 Score=54.26 Aligned_cols=344 Identities=11% Similarity=0.058 Sum_probs=169.3
Q ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHHHHHcCCCcccHHHHHHH----HHHHHHh--hhcCCCCCHHHHHHHHHHHHhC
Q 036198 117 AYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLMI----LKQYTEK--IKVKTQPEINALNLLLDALCKC 190 (499)
Q Consensus 117 ~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~----l~~~~~~--~~~~~~~~~~~~~~li~~~~~~ 190 (499)
..+..|..|.- +.|++++|...+.-.....-.+........+ +..|.+. .....+.+.-.-..+++...+.
T Consensus 58 ~~~lWia~C~f---hLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~k~pL~~RLlfhlahkl 134 (557)
T KOG3785|consen 58 SLQLWIAHCYF---HLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKSIAEKAPKTPLCIRLLFHLAHKL 134 (557)
T ss_pred HHHHHHHHHHH---hhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHh
Confidence 34444444442 6788888888888766654222222222211 2223222 2233344444555566666677
Q ss_pred CChHHHHHHHHHhhcC----CCCChhhHHHH----HHHHHHHHHHcCCCCCHHHHHHHH-HHHHhcCCHhHHHHHHHHHH
Q 036198 191 GLVDYAETICKRVKNK----VKPNANTYNIL----GMQTLEEMIQMGHAPDNFTYNTAI-DTFCKARMVTEAADLFEFMR 261 (499)
Q Consensus 191 g~~~~A~~~~~~m~~~----~~p~~~~~~~l----a~~~~~~m~~~g~~p~~~~~~~li-~~~~~~g~~~~a~~~~~~m~ 261 (499)
|+-++-..+...+... .+.-...|... |.+++.+....+ |+-...|..+ -+|.+..-++-+.+++.-..
T Consensus 135 ndEk~~~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn--~ey~alNVy~ALCyyKlDYydvsqevl~vYL 212 (557)
T KOG3785|consen 135 NDEKRILTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDN--PEYIALNVYMALCYYKLDYYDVSQEVLKVYL 212 (557)
T ss_pred CcHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcC--hhhhhhHHHHHHHHHhcchhhhHHHHHHHHH
Confidence 8877776666665542 11111222222 888888777643 4555555555 45567777888888888877
Q ss_pred HcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH--------------HHcCC------------CcC-----HHhH
Q 036198 262 TKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHM--------------INSGC------------LPD-----VSTY 310 (499)
Q Consensus 262 ~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m--------------~~~~~------------~~~-----~~~~ 310 (499)
+.- +.+..+.|.......+.=.-..|.+-...+ .++++ -|. +..-
T Consensus 213 ~q~----pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~~IPEAR 288 (557)
T KOG3785|consen 213 RQF----PDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMKHIPEAR 288 (557)
T ss_pred HhC----CCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHcCeEEEeCCccHHHhchHHHhhChHhh
Confidence 763 334455554444333321111122222222 22211 000 0111
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcC-------CHHHHHHHHHHHHHCCCCcCh------
Q 036198 311 KEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNK-------NGDEALRLYGRMIEVGCWPSV------ 377 (499)
Q Consensus 311 ~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g-------~~~~a~~~~~~m~~~~~~~~~------ 377 (499)
-.|+--|.+.+++.+|..+.+++.-. .|-......+. ++..| ....|.+.|+-.-+.+..-|.
T Consensus 289 lNL~iYyL~q~dVqeA~~L~Kdl~Pt--tP~EyilKgvv--~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQs 364 (557)
T KOG3785|consen 289 LNLIIYYLNQNDVQEAISLCKDLDPT--TPYEYILKGVV--FAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQS 364 (557)
T ss_pred hhheeeecccccHHHHHHHHhhcCCC--ChHHHHHHHHH--HHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHH
Confidence 12333467788888888877665421 11111111111 12222 234455555544333322111
Q ss_pred --------------hhH---------------HHHHHHHHhcCCchHHHHHHHHHhHCCCCCCHHHHH-HHHHHHHhCCC
Q 036198 378 --------------QTY---------------NMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYC-VMIDGLFDCSK 427 (499)
Q Consensus 378 --------------~~~---------------~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~-~li~~~~~~g~ 427 (499)
.+| -.+.++++..|++.+|+++|-.+....++ |..+|. .+.++|.+.+.
T Consensus 365 mAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N~AQAk~atgny~eaEelf~~is~~~ik-n~~~Y~s~LArCyi~nkk 443 (557)
T KOG3785|consen 365 MASYFFLSFQFDDVLTYLNSIESYFTNDDDFNLNLAQAKLATGNYVEAEELFIRISGPEIK-NKILYKSMLARCYIRNKK 443 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhHHHHHHHHhcChHHHHHHHhhhcChhhh-hhHHHHHHHHHHHHhcCC
Confidence 111 23455666667777777777666544333 444554 34456667777
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHH-HHHHHHHHhcCCHHHHHHHHHHHHhhc
Q 036198 428 VEEACFLLEEVVNKGLKLPYRKF-DSYLMQLSVIGDLGAIHKLSDHMRKFY 477 (499)
Q Consensus 428 ~~~a~~~~~~m~~~~~~p~~~~~-~~ll~~~~~~g~~~~a~~~~~~m~~~~ 477 (499)
++.|+.++-.+.. +-+..+. ..+.+-|.+.+.+=-|-+.|+.+....
T Consensus 444 P~lAW~~~lk~~t---~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lD 491 (557)
T KOG3785|consen 444 PQLAWDMMLKTNT---PSERFSLLQLIANDCYKANEFYYAAKAFDELEILD 491 (557)
T ss_pred chHHHHHHHhcCC---chhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccC
Confidence 7777666544422 1222232 233356667777666666666665543
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.06 E-value=0.017 Score=59.34 Aligned_cols=248 Identities=15% Similarity=0.084 Sum_probs=143.7
Q ss_pred CHHHHHHHHHHHHhCCChHHHHHHHHHhhcCCCCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHH
Q 036198 176 EINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAAD 255 (499)
Q Consensus 176 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~~~~~la~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~ 255 (499)
....|..+..+-.+.|.+.+|.+-|-+. -|+..|..+++.+.+.|.|++-.+
T Consensus 1103 ~p~vWsqlakAQL~~~~v~dAieSyika----------------------------dDps~y~eVi~~a~~~~~~edLv~ 1154 (1666)
T KOG0985|consen 1103 EPAVWSQLAKAQLQGGLVKDAIESYIKA----------------------------DDPSNYLEVIDVASRTGKYEDLVK 1154 (1666)
T ss_pred ChHHHHHHHHHHHhcCchHHHHHHHHhc----------------------------CCcHHHHHHHHHHHhcCcHHHHHH
Confidence 3457788888888888888887766433 267788888999999999999888
Q ss_pred HHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 036198 256 LFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGN 335 (499)
Q Consensus 256 ~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~ 335 (499)
.+...++.. ..|.+. +.+|-+|++.+++.+.+..+ ..||......+.+-|...|.++.|.-+|.....
T Consensus 1155 yL~MaRkk~---~E~~id--~eLi~AyAkt~rl~elE~fi-------~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~vSN 1222 (1666)
T KOG0985|consen 1155 YLLMARKKV---REPYID--SELIFAYAKTNRLTELEEFI-------AGPNVANIQQVGDRCFEEKMYEAAKLLYSNVSN 1222 (1666)
T ss_pred HHHHHHHhh---cCccch--HHHHHHHHHhchHHHHHHHh-------cCCCchhHHHHhHHHhhhhhhHHHHHHHHHhhh
Confidence 888777766 345443 46788888888877665544 236666666666666666666666655543321
Q ss_pred C--------------------CCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcChhhHHHHHHHHHhcCCchH
Q 036198 336 K--------------------GYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDG 395 (499)
Q Consensus 336 ~--------------------~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~ 395 (499)
. .-..+..+|.-+..+|...+.+.-| +|...++.....-..-++.-|-..|-+++
T Consensus 1223 ~a~La~TLV~LgeyQ~AVD~aRKAns~ktWK~VcfaCvd~~EFrlA-----QiCGL~iivhadeLeeli~~Yq~rGyFeE 1297 (1666)
T KOG0985|consen 1223 FAKLASTLVYLGEYQGAVDAARKANSTKTWKEVCFACVDKEEFRLA-----QICGLNIIVHADELEELIEYYQDRGYFEE 1297 (1666)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHhchhhhhHH-----HhcCceEEEehHhHHHHHHHHHhcCcHHH
Confidence 0 0012344555555555444443322 23222333344455677777888888887
Q ss_pred HHHHHHHHhHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 036198 396 AFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHMRK 475 (499)
Q Consensus 396 a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~ 475 (499)
...+++...... +.....|+.+.-.|++- ++++..+-++-.-. ....-.+++|+-...-|.+..-++.+-.+
T Consensus 1298 lIsl~Ea~LGLE-RAHMgmfTELaiLYsky-kp~km~EHl~LFws------RvNipKviRA~eqahlW~ElvfLY~~y~e 1369 (1666)
T KOG0985|consen 1298 LISLLEAGLGLE-RAHMGMFTELAILYSKY-KPEKMMEHLKLFWS------RVNIPKVIRAAEQAHLWSELVFLYDKYEE 1369 (1666)
T ss_pred HHHHHHhhhchh-HHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHH------hcchHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 777776543221 12334566666666553 33444333332211 11222455555555555555555554444
Q ss_pred h
Q 036198 476 F 476 (499)
Q Consensus 476 ~ 476 (499)
.
T Consensus 1370 y 1370 (1666)
T KOG0985|consen 1370 Y 1370 (1666)
T ss_pred h
Confidence 3
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=98.05 E-value=0.0043 Score=61.27 Aligned_cols=138 Identities=22% Similarity=0.256 Sum_probs=78.7
Q ss_pred HHHHHHhcCCHhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHh
Q 036198 240 AIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCL 319 (499)
Q Consensus 240 li~~~~~~g~~~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~ 319 (499)
.+.+...+.+|.+|+.+++.+.++. .-..-|..+...|+..|+++.|.++|.+. ..++-.|.+|.+
T Consensus 738 aieaai~akew~kai~ildniqdqk-----~~s~yy~~iadhyan~~dfe~ae~lf~e~---------~~~~dai~my~k 803 (1636)
T KOG3616|consen 738 AIEAAIGAKEWKKAISILDNIQDQK-----TASGYYGEIADHYANKGDFEIAEELFTEA---------DLFKDAIDMYGK 803 (1636)
T ss_pred HHHHHhhhhhhhhhHhHHHHhhhhc-----cccccchHHHHHhccchhHHHHHHHHHhc---------chhHHHHHHHhc
Confidence 4455556667777777777666654 12334556666777777777777776442 134445667777
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcChhhHHHHHHHHHhcCCchHHHHH
Q 036198 320 AGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFET 399 (499)
Q Consensus 320 ~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~ 399 (499)
.|+|+.|.++-.+.. |.......|-+-..-+-+.|++.+|+++|-.+.+ |+. .|..|-+.|..+...++
T Consensus 804 ~~kw~da~kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti~~----p~~-----aiqmydk~~~~ddmirl 872 (1636)
T KOG3616|consen 804 AGKWEDAFKLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITIGE----PDK-----AIQMYDKHGLDDDMIRL 872 (1636)
T ss_pred cccHHHHHHHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEccC----chH-----HHHHHHhhCcchHHHHH
Confidence 777777777655543 3333445555555555666666666666543321 332 34455555555555554
Q ss_pred HHH
Q 036198 400 WHE 402 (499)
Q Consensus 400 ~~~ 402 (499)
..+
T Consensus 873 v~k 875 (1636)
T KOG3616|consen 873 VEK 875 (1636)
T ss_pred HHH
Confidence 443
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.04 E-value=0.0045 Score=61.97 Aligned_cols=301 Identities=13% Similarity=0.101 Sum_probs=152.9
Q ss_pred HHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHHhhhcCCCC
Q 036198 96 KIAFRFFMWAGHQDNYAHEPLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLMILKQYTEKIKVKTQP 175 (499)
Q Consensus 96 ~~a~~~f~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 175 (499)
+.|++-.+.+. +...|..+.+.|. +.++++-|.-.+-+|..... .++..+... .|
T Consensus 745 D~AfksI~~Ik-------S~~vW~nmA~McV----kT~RLDVAkVClGhm~~aRg-----------aRAlR~a~q---~~ 799 (1416)
T KOG3617|consen 745 DAAFKSIQFIK-------SDSVWDNMASMCV----KTRRLDVAKVCLGHMKNARG-----------ARALRRAQQ---NG 799 (1416)
T ss_pred HHHHHHHHHHh-------hhHHHHHHHHHhh----hhccccHHHHhhhhhhhhhh-----------HHHHHHHHh---CC
Confidence 44555554443 6688999999999 89999999988888875431 112111111 12
Q ss_pred CHHHHHHHHHHHHhCCChHHHHHHHHHhhcCCCCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHH
Q 036198 176 EINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAAD 255 (499)
Q Consensus 176 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~~~~~la~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~ 255 (499)
+ ..=.-+.-.....|.+++|+.+|++-++ |..|=..|-..|.|++|.+
T Consensus 800 ~-e~eakvAvLAieLgMlEeA~~lYr~ckR-------------------------------~DLlNKlyQs~g~w~eA~e 847 (1416)
T KOG3617|consen 800 E-EDEAKVAVLAIELGMLEEALILYRQCKR-------------------------------YDLLNKLYQSQGMWSEAFE 847 (1416)
T ss_pred c-chhhHHHHHHHHHhhHHHHHHHHHHHHH-------------------------------HHHHHHHHHhcccHHHHHH
Confidence 1 2222222334567888999999887664 2223344455566666655
Q ss_pred HHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH----------HHcC---------CCcCHHhHHHHHHH
Q 036198 256 LFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHM----------INSG---------CLPDVSTYKEVLEG 316 (499)
Q Consensus 256 ~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m----------~~~~---------~~~~~~~~~~ll~~ 316 (499)
+-+.--... =-.||......+-..++.+.|++.|++. .... -..|...|.--..-
T Consensus 848 iAE~~DRiH------Lr~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqY 921 (1416)
T KOG3617|consen 848 IAETKDRIH------LRNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQY 921 (1416)
T ss_pred HHhhcccee------hhhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHH
Confidence 544322211 1123433444444455555555555432 1110 01122222222233
Q ss_pred HHhcCCHHHHHHHHHHHHhCC--------------------CCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcC
Q 036198 317 MCLAGKVEEAYKFLEEMGNKG--------------------YPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPS 376 (499)
Q Consensus 317 ~~~~g~~~~a~~~~~~m~~~~--------------------~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~ 376 (499)
+-..|+.|.|+.+|......- -.-|....-.+...|-..|++.+|...|-+..
T Consensus 922 lES~GemdaAl~~Y~~A~D~fs~VrI~C~qGk~~kAa~iA~esgd~AAcYhlaR~YEn~g~v~~Av~FfTrAq------- 994 (1416)
T KOG3617|consen 922 LESVGEMDAALSFYSSAKDYFSMVRIKCIQGKTDKAARIAEESGDKAACYHLARMYENDGDVVKAVKFFTRAQ------- 994 (1416)
T ss_pred HhcccchHHHHHHHHHhhhhhhheeeEeeccCchHHHHHHHhcccHHHHHHHHHHhhhhHHHHHHHHHHHHHH-------
Confidence 334566666666665443210 01133444455555666666666666555432
Q ss_pred hhhHHHHHHHHHhcC---------------CchHHHHHHHHHhHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHH-----
Q 036198 377 VQTYNMLISMYFELG---------------EPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLE----- 436 (499)
Q Consensus 377 ~~~~~~li~~~~~~~---------------~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~----- 436 (499)
+|...|+.|-.++ +.-.|-++|++. |. -+...+..|-++|.+.+|+++.-
T Consensus 995 --afsnAIRlcKEnd~~d~L~nlal~s~~~d~v~aArYyEe~---g~-----~~~~AVmLYHkAGm~~kALelAF~tqQf 1064 (1416)
T KOG3617|consen 995 --AFSNAIRLCKENDMKDRLANLALMSGGSDLVSAARYYEEL---GG-----YAHKAVMLYHKAGMIGKALELAFRTQQF 1064 (1416)
T ss_pred --HHHHHHHHHHhcCHHHHHHHHHhhcCchhHHHHHHHHHHc---ch-----hhhHHHHHHHhhcchHHHHHHHHhhccc
Confidence 2222222222111 111222222221 11 12334455667777777766532
Q ss_pred ---HHHHC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 036198 437 ---EVVNK--GLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHMRKF 476 (499)
Q Consensus 437 ---~m~~~--~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~ 476 (499)
++... ...-|+...+.-.+-++...++++|..++-..+++
T Consensus 1065 ~aL~lIa~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar~~ 1109 (1416)
T KOG3617|consen 1065 SALDLIAKDLDAGSDPKLLRRCADFFENNQQYEKAVNLLCLAREF 1109 (1416)
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 12222 33356777777778888889999998888777664
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.04 E-value=0.0088 Score=56.54 Aligned_cols=138 Identities=16% Similarity=0.134 Sum_probs=85.6
Q ss_pred HHhcCCHhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcC-HHhHHHHHHHHHhcCC
Q 036198 244 FCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPD-VSTYKEVLEGMCLAGK 322 (499)
Q Consensus 244 ~~~~g~~~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~ll~~~~~~g~ 322 (499)
+...|++++|+..++.+...- +-|...+......+.+.++..+|.+.++.+... .|+ ....-.+..+|.+.|+
T Consensus 316 ~~~~~~~d~A~~~l~~L~~~~----P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all~~g~ 389 (484)
T COG4783 316 TYLAGQYDEALKLLQPLIAAQ----PDNPYYLELAGDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALLKGGK 389 (484)
T ss_pred HHHhcccchHHHHHHHHHHhC----CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHhcCC
Confidence 334567777777777766653 345555566666677777777777777777665 344 3444455566777777
Q ss_pred HHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcChhhHHHHHHHHHhcCCchHHHHHHHH
Q 036198 323 VEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHE 402 (499)
Q Consensus 323 ~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 402 (499)
+.+|..+++...... +-|+..|..|..+|...|+..++..-..+ +|...|+++.|...+..
T Consensus 390 ~~eai~~L~~~~~~~-p~dp~~w~~LAqay~~~g~~~~a~~A~AE------------------~~~~~G~~~~A~~~l~~ 450 (484)
T COG4783 390 PQEAIRILNRYLFND-PEDPNGWDLLAQAYAELGNRAEALLARAE------------------GYALAGRLEQAIIFLMR 450 (484)
T ss_pred hHHHHHHHHHHhhcC-CCCchHHHHHHHHHHHhCchHHHHHHHHH------------------HHHhCCCHHHHHHHHHH
Confidence 777777777665553 33666777777777777766666544433 33445666666666666
Q ss_pred HhHC
Q 036198 403 MDKR 406 (499)
Q Consensus 403 m~~~ 406 (499)
..+.
T Consensus 451 A~~~ 454 (484)
T COG4783 451 ASQQ 454 (484)
T ss_pred HHHh
Confidence 5544
|
|
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=98.03 E-value=9.3e-05 Score=70.28 Aligned_cols=127 Identities=14% Similarity=0.116 Sum_probs=106.8
Q ss_pred cCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCH
Q 036198 228 MGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDV 307 (499)
Q Consensus 228 ~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~ 307 (499)
.+.+.+......+++.+....+++.+..++.+....... ...-..|.+++++.|...|..+.++.++..=...|+-||.
T Consensus 60 ~~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~-~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~ 138 (429)
T PF10037_consen 60 RKKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNC-SYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDN 138 (429)
T ss_pred cCCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCccc-ccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCCh
Confidence 345567888888899999999999999999988876321 2222345679999999999999999999999999999999
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHc
Q 036198 308 STYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDN 355 (499)
Q Consensus 308 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 355 (499)
.+++.||+.+.+.|++..|.++...|...+...+..|+...+.+|.+.
T Consensus 139 ~s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 139 FSFNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred hhHHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 999999999999999999999999988887777778887777777766
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=98.03 E-value=1.1e-05 Score=47.06 Aligned_cols=32 Identities=22% Similarity=0.372 Sum_probs=18.0
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCC
Q 036198 414 TYCVMIDGLFDCSKVEEACFLLEEVVNKGLKL 445 (499)
Q Consensus 414 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p 445 (499)
+|+.++.+|++.|+++.|.++|++|.+.|++|
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 45555555555555555555555555555544
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.02 E-value=0.01 Score=53.52 Aligned_cols=305 Identities=11% Similarity=0.041 Sum_probs=208.7
Q ss_pred HHHHHHHHhccCCCchHHHHHhhC--CCCCCHHHHHHHHHccC-----CChHHHHHHHHHhhcCCCCCCCHHHHH-HHHH
Q 036198 52 AKLYEAIIDNSNAYDNMEKALDSL--GVPLTTDSVVGVLQRFQ-----FEEKIAFRFFMWAGHQDNYAHEPLAYN-LMID 123 (499)
Q Consensus 52 ~~~~~~l~~~~~~~~~~~~al~~~--~~~~~~~~~~~~l~~~~-----~~~~~a~~~f~~~~~~~~~~~~~~~~~-~li~ 123 (499)
..-.-.+-+.+...+.+.+||..+ .+..+|+.+..++++.. ...+.|+.-+.... ..+||-..-. .-..
T Consensus 38 vekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVl---elKpDF~~ARiQRg~ 114 (504)
T KOG0624|consen 38 VEKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVL---ELKPDFMAARIQRGV 114 (504)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHH---hcCccHHHHHHHhch
Confidence 344556677777888999999987 57788998888887631 12234555555442 2345533221 1234
Q ss_pred HHhcchhhhhhHHHHHHHHHHHHHcCCCcccH-HHHHHHHHHHHHhhhcCCCCCHH--HHHHHHHHHHhCCChHHHHHHH
Q 036198 124 ILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPV-DVLLMILKQYTEKIKVKTQPEIN--ALNLLLDALCKCGLVDYAETIC 200 (499)
Q Consensus 124 ~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~--~~~~li~~~~~~g~~~~A~~~~ 200 (499)
.+. +.|.++.|..=|+............ +....+ .+... .....+..+.-.|+...|++..
T Consensus 115 vll----K~Gele~A~~DF~~vl~~~~s~~~~~eaqskl------------~~~~e~~~l~~ql~s~~~~GD~~~ai~~i 178 (504)
T KOG0624|consen 115 VLL----KQGELEQAEADFDQVLQHEPSNGLVLEAQSKL------------ALIQEHWVLVQQLKSASGSGDCQNAIEMI 178 (504)
T ss_pred hhh----hcccHHHHHHHHHHHHhcCCCcchhHHHHHHH------------HhHHHHHHHHHHHHHHhcCCchhhHHHHH
Confidence 566 9999999999999998877422111 111111 11111 2234455566678889998888
Q ss_pred HHhhcCCCCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCCCCHHHHHHHHH
Q 036198 201 KRVKNKVKPNANTYNILGMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIV 280 (499)
Q Consensus 201 ~~m~~~~~p~~~~~~~la~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~ 280 (499)
+.+.+- .+-|+..+..-..+|...|++..|+.=++...+.. ..+..++--+-.
T Consensus 179 ~~llEi-----------------------~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs----~DnTe~~ykis~ 231 (504)
T KOG0624|consen 179 THLLEI-----------------------QPWDASLRQARAKCYIAEGEPKKAIHDLKQASKLS----QDNTEGHYKISQ 231 (504)
T ss_pred HHHHhc-----------------------CcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc----ccchHHHHHHHH
Confidence 887662 22377888888999999999999998887776653 457777778888
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCcCHHh----HHHH---------HHHHHhcCCHHHHHHHHHHHHhCCCCCCHh---h
Q 036198 281 ALVQNDRMEECFSLLGHMINSGCLPDVST----YKEV---------LEGMCLAGKVEEAYKFLEEMGNKGYPPDIV---T 344 (499)
Q Consensus 281 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~----~~~l---------l~~~~~~g~~~~a~~~~~~m~~~~~~p~~~---~ 344 (499)
.+...|+.+.++...++..+. .||-.. |..+ +......++|.++.+-.+...+........ .
T Consensus 232 L~Y~vgd~~~sL~~iRECLKl--dpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~ 309 (504)
T KOG0624|consen 232 LLYTVGDAENSLKEIRECLKL--DPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNG 309 (504)
T ss_pred HHHhhhhHHHHHHHHHHHHcc--CcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeee
Confidence 888999999999999888876 355432 2111 233456678888888888877764332223 3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcC-hhhHHHHHHHHHhcCCchHHHHHHHHHhHC
Q 036198 345 YNCFLKVLCDNKNGDEALRLYGRMIEVGCWPS-VQTYNMLISMYFELGEPDGAFETWHEMDKR 406 (499)
Q Consensus 345 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 406 (499)
+..+..++...|++.+|++.-.+..+. .|| +.++.--..+|.-..+++.|+.-|+...+.
T Consensus 310 ~r~~c~C~~~d~~~~eAiqqC~evL~~--d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~ 370 (504)
T KOG0624|consen 310 FRVLCTCYREDEQFGEAIQQCKEVLDI--DPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALEL 370 (504)
T ss_pred eheeeecccccCCHHHHHHHHHHHHhc--CchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc
Confidence 445667777888999999999988874 355 788888888998888999999999888775
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.01 E-value=0.0006 Score=55.44 Aligned_cols=90 Identities=10% Similarity=-0.095 Sum_probs=37.4
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCcChhhHHHHHHHHHhcCCchHHHHHHHHHhHCCCCCCHHHHHHHHHHHHhCCCH
Q 036198 349 LKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKV 428 (499)
Q Consensus 349 i~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~ 428 (499)
...+...|++++|...|+...... +.+...|..+..++...|++++|...|+...+.. +.+...+..+..++...|+.
T Consensus 31 g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~-p~~~~a~~~lg~~l~~~g~~ 108 (144)
T PRK15359 31 GYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD-ASHPEPVYQTGVCLKMMGEP 108 (144)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCH
Confidence 333344444444444444444332 1233344444444444444444444444444331 12333444444444444444
Q ss_pred HHHHHHHHHHHH
Q 036198 429 EEACFLLEEVVN 440 (499)
Q Consensus 429 ~~a~~~~~~m~~ 440 (499)
++|...++...+
T Consensus 109 ~eAi~~~~~Al~ 120 (144)
T PRK15359 109 GLAREAFQTAIK 120 (144)
T ss_pred HHHHHHHHHHHH
Confidence 444444444443
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.01 E-value=0.023 Score=57.65 Aligned_cols=157 Identities=12% Similarity=0.122 Sum_probs=93.2
Q ss_pred CHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhCCCh
Q 036198 114 EPLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLMILKQYTEKIKVKTQPEINALNLLLDALCKCGLV 193 (499)
Q Consensus 114 ~~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 193 (499)
|..|...+-..|. ..++.++|..+|++..... |+..-...+..+|.+-+++
T Consensus 76 D~~tLq~l~~~y~----d~~~~d~~~~~Ye~~~~~~-------------------------P~eell~~lFmayvR~~~y 126 (932)
T KOG2053|consen 76 DDLTLQFLQNVYR----DLGKLDEAVHLYERANQKY-------------------------PSEELLYHLFMAYVREKSY 126 (932)
T ss_pred chHHHHHHHHHHH----HHhhhhHHHHHHHHHHhhC-------------------------CcHHHHHHHHHHHHHHHHH
Confidence 6777777777777 8888888888888887665 4544555555566665555
Q ss_pred HH----HHHHHHHhhcC---------------CCCChh---hHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHhcCCH
Q 036198 194 DY----AETICKRVKNK---------------VKPNAN---TYNILGMQTLEEMIQMG-HAPDNFTYNTAIDTFCKARMV 250 (499)
Q Consensus 194 ~~----A~~~~~~m~~~---------------~~p~~~---~~~~la~~~~~~m~~~g-~~p~~~~~~~li~~~~~~g~~ 250 (499)
.+ |.++++...++ ..|+.. .+-.+|.+..+.+.+.+ .--+..-...-...+-..|++
T Consensus 127 k~qQkaa~~LyK~~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~ 206 (932)
T KOG2053|consen 127 KKQQKAALQLYKNFPKRAYYFWSVISLILQSIFSENELLDPILLALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKY 206 (932)
T ss_pred HHHHHHHHHHHHhCCcccchHHHHHHHHHHhccCCcccccchhHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccH
Confidence 43 33444433221 011111 11111667777776654 222333333444556677888
Q ss_pred hHHHHHHH-HHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 036198 251 TEAADLFE-FMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSG 302 (499)
Q Consensus 251 ~~a~~~~~-~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~ 302 (499)
++|++++. ...+.- ...+...-+.-+..+...++|.+..++-.++...|
T Consensus 207 ~eal~~l~~~la~~l---~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~ 256 (932)
T KOG2053|consen 207 QEALEFLAITLAEKL---TSANLYLENKKLDLLKLLNRWQELFELSSRLLEKG 256 (932)
T ss_pred HHHHHHHHHHHHHhc---cccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhC
Confidence 99998884 333332 33445555666777777888888888887777765
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.00 E-value=0.0005 Score=55.32 Aligned_cols=94 Identities=17% Similarity=0.121 Sum_probs=40.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHH
Q 036198 275 YAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCD 354 (499)
Q Consensus 275 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~ 354 (499)
...+...+...|++++|...|+.+.+.+ +.+...+..+...+...|++++|...++...+.+ +.+...+..+...+..
T Consensus 20 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~ 97 (135)
T TIGR02552 20 IYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAAECLLA 97 (135)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHH
Confidence 3333344444444444444444444332 2233444444444444444444444444443332 1133334444444444
Q ss_pred cCCHHHHHHHHHHHHH
Q 036198 355 NKNGDEALRLYGRMIE 370 (499)
Q Consensus 355 ~g~~~~a~~~~~~m~~ 370 (499)
.|+++.|...|+...+
T Consensus 98 ~g~~~~A~~~~~~al~ 113 (135)
T TIGR02552 98 LGEPESALKALDLAIE 113 (135)
T ss_pred cCCHHHHHHHHHHHHH
Confidence 4444444444444444
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=98.00 E-value=0.00083 Score=66.02 Aligned_cols=150 Identities=19% Similarity=0.185 Sum_probs=83.3
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcChhhHHHHHHHHHhcCCc
Q 036198 314 LEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEP 393 (499)
Q Consensus 314 l~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~ 393 (499)
+.+.....+|.+|+.+++.++..+. -..-|..+...|+..|+++.|+++|-+. ..++-.|..|.+.|+|
T Consensus 739 ieaai~akew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe~ae~lf~e~---------~~~~dai~my~k~~kw 807 (1636)
T KOG3616|consen 739 IEAAIGAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFEIAEELFTEA---------DLFKDAIDMYGKAGKW 807 (1636)
T ss_pred HHHHhhhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHHHHHHHHHhc---------chhHHHHHHHhccccH
Confidence 4445556677777777777666532 2334556666777777777777776442 2334456667777777
Q ss_pred hHHHHHHHHHhHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHH---------H-HHCCC-----------CCC--HHHH
Q 036198 394 DGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEE---------V-VNKGL-----------KLP--YRKF 450 (499)
Q Consensus 394 ~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~---------m-~~~~~-----------~p~--~~~~ 450 (499)
+.|.++-.+... .......|-+-..-+-.+|++.+|.+++-. | .+.|. .|+ ..|.
T Consensus 808 ~da~kla~e~~~--~e~t~~~yiakaedldehgkf~eaeqlyiti~~p~~aiqmydk~~~~ddmirlv~k~h~d~l~dt~ 885 (1636)
T KOG3616|consen 808 EDAFKLAEECHG--PEATISLYIAKAEDLDEHGKFAEAEQLYITIGEPDKAIQMYDKHGLDDDMIRLVEKHHGDHLHDTH 885 (1636)
T ss_pred HHHHHHHHHhcC--chhHHHHHHHhHHhHHhhcchhhhhheeEEccCchHHHHHHHhhCcchHHHHHHHHhChhhhhHHH
Confidence 777666554422 223333444433334444444444333210 0 01111 122 3456
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhh
Q 036198 451 DSYLMQLSVIGDLGAIHKLSDHMRKF 476 (499)
Q Consensus 451 ~~ll~~~~~~g~~~~a~~~~~~m~~~ 476 (499)
..+..-|-..|++..|++-|-+..+.
T Consensus 886 ~~f~~e~e~~g~lkaae~~flea~d~ 911 (1636)
T KOG3616|consen 886 KHFAKELEAEGDLKAAEEHFLEAGDF 911 (1636)
T ss_pred HHHHHHHHhccChhHHHHHHHhhhhH
Confidence 67777788889999888877666543
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=97.94 E-value=0.00075 Score=54.28 Aligned_cols=107 Identities=14% Similarity=0.074 Sum_probs=89.3
Q ss_pred CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHhHHH
Q 036198 233 DNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKE 312 (499)
Q Consensus 233 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ 312 (499)
+......+...+...|++++|.+.|+.....+ +.+...+..+...+...|++++|...++...+.+ +.+...+..
T Consensus 16 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~----p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~ 90 (135)
T TIGR02552 16 QLEQIYALAYNLYQQGRYDEALKLFQLLAAYD----PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFH 90 (135)
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC----CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHH
Confidence 44556777888999999999999999998875 4578889999999999999999999999988775 556777888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHH
Q 036198 313 VLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYN 346 (499)
Q Consensus 313 ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~ 346 (499)
+...+...|++++|...|+...+.. |+...+.
T Consensus 91 la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~ 122 (135)
T TIGR02552 91 AAECLLALGEPESALKALDLAIEIC--GENPEYS 122 (135)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhc--cccchHH
Confidence 8889999999999999999988763 4444433
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.00016 Score=53.86 Aligned_cols=41 Identities=22% Similarity=0.331 Sum_probs=19.1
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCC-CcChhhHHHHHHHHHh
Q 036198 349 LKVLCDNKNGDEALRLYGRMIEVGC-WPSVQTYNMLISMYFE 389 (499)
Q Consensus 349 i~~~~~~g~~~~a~~~~~~m~~~~~-~~~~~~~~~li~~~~~ 389 (499)
|..+...+++.....+|+.+.+.|+ .|+..+|+.++.+.++
T Consensus 32 I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~ 73 (120)
T PF08579_consen 32 INSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAK 73 (120)
T ss_pred HHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHH
Confidence 3333334444444444444444444 4444455444444443
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.024 Score=54.32 Aligned_cols=212 Identities=13% Similarity=0.084 Sum_probs=133.4
Q ss_pred HHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHhHHHH----
Q 036198 238 NTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEV---- 313 (499)
Q Consensus 238 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l---- 313 (499)
..+.++.-+..+++.|++-+....+.. -+..-++..-.+|...|.+.++...-++..+.|.. ...-|+.+
T Consensus 228 k~lgnaaykkk~f~~a~q~y~~a~el~-----~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~ 301 (539)
T KOG0548|consen 228 KELGNAAYKKKDFETAIQHYAKALELA-----TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKAL 301 (539)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhHh-----hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHH
Confidence 456677777788888888888877653 24455566667788888877777776666665522 22233332
Q ss_pred ---HHHHHhcCCHHHHHHHHHHHHhCCCCCCHhh-------------------------HHHHHHHHHHcCCHHHHHHHH
Q 036198 314 ---LEGMCLAGKVEEAYKFLEEMGNKGYPPDIVT-------------------------YNCFLKVLCDNKNGDEALRLY 365 (499)
Q Consensus 314 ---l~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~-------------------------~~~li~~~~~~g~~~~a~~~~ 365 (499)
-.+|.+.++++.|...|.+.....-.|+... -..-...+.+.|++..|...|
T Consensus 302 ~r~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~Y 381 (539)
T KOG0548|consen 302 ARLGNAYTKREDYEGAIKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHY 381 (539)
T ss_pred HHhhhhhhhHHhHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHH
Confidence 3356666778888888877654433333211 111134456778888888888
Q ss_pred HHHHHCCCCcChhhHHHHHHHHHhcCCchHHHHHHHHHhHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCC
Q 036198 366 GRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKL 445 (499)
Q Consensus 366 ~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p 445 (499)
.++++.. +-|...|+...-+|.+.|.+..|+.-.+...+.. ++....|..=..++....++++|.+.|.+.++.. |
T Consensus 382 teAIkr~-P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~-p~~~kgy~RKg~al~~mk~ydkAleay~eale~d--p 457 (539)
T KOG0548|consen 382 TEAIKRD-PEDARLYSNRAACYLKLGEYPEALKDAKKCIELD-PNFIKAYLRKGAALRAMKEYDKALEAYQEALELD--P 457 (539)
T ss_pred HHHHhcC-CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--c
Confidence 8888765 3567788888888888888888887777666651 2233344444445555667888888888777665 4
Q ss_pred CHHHHHHHHHHHHh
Q 036198 446 PYRKFDSYLMQLSV 459 (499)
Q Consensus 446 ~~~~~~~ll~~~~~ 459 (499)
+..-+...+.-|..
T Consensus 458 ~~~e~~~~~~rc~~ 471 (539)
T KOG0548|consen 458 SNAEAIDGYRRCVE 471 (539)
T ss_pred hhHHHHHHHHHHHH
Confidence 44444333333333
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.013 Score=50.91 Aligned_cols=166 Identities=15% Similarity=0.153 Sum_probs=98.1
Q ss_pred HcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcC
Q 036198 227 QMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPD 306 (499)
Q Consensus 227 ~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~ 306 (499)
......+......-...|++.|++++|++..+.. -+......=...+.+..+++-|.+.+++|.+. .+
T Consensus 101 ~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~---------~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~i---de 168 (299)
T KOG3081|consen 101 DSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLG---------ENLEAAALNVQILLKMHRFDLAEKELKKMQQI---DE 168 (299)
T ss_pred hhccchhHHHHHHhhHHhhcCCChHHHHHHHhcc---------chHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc---ch
Confidence 3333334344444456677777777777776651 13344444444555666777777777777764 35
Q ss_pred HHhHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcChhhHHH
Q 036198 307 VSTYKEVLEGMCL----AGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNM 382 (499)
Q Consensus 307 ~~~~~~ll~~~~~----~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ 382 (499)
..|.+.|..++.+ .+...+|.-+|++|.++ ..|+..+.+....++...|++++|..++++...... .+..+...
T Consensus 169 d~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~-~dpetL~N 246 (299)
T KOG3081|consen 169 DATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDA-KDPETLAN 246 (299)
T ss_pred HHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccC-CCHHHHHH
Confidence 5666656555543 34567777777777654 456777777777777777777777777777766542 34455555
Q ss_pred HHHHHHhcCCch-HHHHHHHHHhHC
Q 036198 383 LISMYFELGEPD-GAFETWHEMDKR 406 (499)
Q Consensus 383 li~~~~~~~~~~-~a~~~~~~m~~~ 406 (499)
++.+-...|... ...+.+..++..
T Consensus 247 liv~a~~~Gkd~~~~~r~l~QLk~~ 271 (299)
T KOG3081|consen 247 LIVLALHLGKDAEVTERNLSQLKLS 271 (299)
T ss_pred HHHHHHHhCCChHHHHHHHHHHHhc
Confidence 555444555443 334455555443
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.0012 Score=53.92 Aligned_cols=128 Identities=15% Similarity=0.145 Sum_probs=70.1
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCH--HhHHHH
Q 036198 236 TYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDV--STYKEV 313 (499)
Q Consensus 236 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~--~~~~~l 313 (499)
.|..++..+ ..++...+...++.+.+.... .+......-.+...+...|++++|...|+........++. ...-.+
T Consensus 14 ~y~~~~~~~-~~~~~~~~~~~~~~l~~~~~~-s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~L 91 (145)
T PF09976_consen 14 LYEQALQAL-QAGDPAKAEAAAEQLAKDYPS-SPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRL 91 (145)
T ss_pred HHHHHHHHH-HCCCHHHHHHHHHHHHHHCCC-ChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHH
Confidence 344444444 366667777777777665421 0111223333445666677777777777777665422211 122334
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHH
Q 036198 314 LEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGR 367 (499)
Q Consensus 314 l~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 367 (499)
...+...|++++|+..++...... .....+......+.+.|+.++|...|+.
T Consensus 92 A~~~~~~~~~d~Al~~L~~~~~~~--~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 92 ARILLQQGQYDEALATLQQIPDEA--FKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHcCCHHHHHHHHHhccCcc--hHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 556666777777777765533322 2334455566666677777777766654
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.013 Score=50.55 Aligned_cols=171 Identities=16% Similarity=0.153 Sum_probs=106.9
Q ss_pred CCCCHH-HHHHHHHHHHhCCChHHHHHHHHHhhcCCCCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHh
Q 036198 173 TQPEIN-ALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVT 251 (499)
Q Consensus 173 ~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~~~~~la~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~ 251 (499)
..++.. .|.-++-+....|+.+.|...++.+..++ |. +..+--.-...+--.|.++
T Consensus 47 ~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f-p~----------------------S~RV~~lkam~lEa~~~~~ 103 (289)
T KOG3060|consen 47 LGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF-PG----------------------SKRVGKLKAMLLEATGNYK 103 (289)
T ss_pred cCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC-CC----------------------ChhHHHHHHHHHHHhhchh
Confidence 445543 56677777778888888888888776643 11 1111111112233457788
Q ss_pred HHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHHHHHHH
Q 036198 252 EAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLE 331 (499)
Q Consensus 252 ~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~ 331 (499)
+|+++++.+.+.+ +.|..++---+...-..|+.-+|++-+....+. +..|...|.-+-..|...|++++|.-.++
T Consensus 104 ~A~e~y~~lL~dd----pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClE 178 (289)
T KOG3060|consen 104 EAIEYYESLLEDD----PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLE 178 (289)
T ss_pred hHHHHHHHHhccC----cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHH
Confidence 8888888887775 446666666666666677767777777777654 45677778888888888888888888887
Q ss_pred HHHhCCCCCCHhhHHHHHHHHHHcC---CHHHHHHHHHHHHHCC
Q 036198 332 EMGNKGYPPDIVTYNCFLKVLCDNK---NGDEALRLYGRMIEVG 372 (499)
Q Consensus 332 ~m~~~~~~p~~~~~~~li~~~~~~g---~~~~a~~~~~~m~~~~ 372 (499)
++.-..+ .+...+..+...+.-.| +.+.+.+.|.+..+..
T Consensus 179 E~ll~~P-~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~ 221 (289)
T KOG3060|consen 179 ELLLIQP-FNPLYFQRLAEVLYTQGGAENLELARKYYERALKLN 221 (289)
T ss_pred HHHHcCC-CcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhC
Confidence 7766532 23344444444444333 4455667777766643
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.024 Score=58.22 Aligned_cols=299 Identities=12% Similarity=0.037 Sum_probs=163.1
Q ss_pred CHHHHHHHHHHHHhCCChHHHHHHHHHhhcCCCCChhhHHHH--------------HHHHHHHHHHcCCCCCHHHHHHHH
Q 036198 176 EINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNIL--------------GMQTLEEMIQMGHAPDNFTYNTAI 241 (499)
Q Consensus 176 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~~~~~l--------------a~~~~~~m~~~g~~p~~~~~~~li 241 (499)
+...+....+.|++..+++.|..+.-...+.-+.-...+|-+ +..-|+...+..+. |...|..++
T Consensus 525 daeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPk-D~n~W~gLG 603 (1238)
T KOG1127|consen 525 DAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPK-DYNLWLGLG 603 (1238)
T ss_pred hhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCch-hHHHHHHHH
Confidence 456788888899999999999888444433322222223322 44555555554443 788999999
Q ss_pred HHHHhcCCHhHHHHHHHHHHHcCCCCCCCCHHHHHHHH--HHHHHcCCHHHHHHHHHHHHHc------CCCcCHHhHHHH
Q 036198 242 DTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMI--VALVQNDRMEECFSLLGHMINS------GCLPDVSTYKEV 313 (499)
Q Consensus 242 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~p~~~~~~~ll--~~~~~~~~~~~a~~~~~~m~~~------~~~~~~~~~~~l 313 (499)
.+|..+|.+..|+++|.+...-. |+ .+|...- ..-+..|.+.++++.+...... +..--..++-.+
T Consensus 604 eAY~~sGry~~AlKvF~kAs~Lr-----P~-s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~ 677 (1238)
T KOG1127|consen 604 EAYPESGRYSHALKVFTKASLLR-----PL-SKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRD 677 (1238)
T ss_pred HHHHhcCceehHHHhhhhhHhcC-----cH-hHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 99999999999999998887643 43 2333222 2345678888888888777643 111112222222
Q ss_pred HHHHHhcCCHHHHHHHHH-------HHHhCCCCCCHhhHHHHHHHH-----------------------HHcCCH---H-
Q 036198 314 LEGMCLAGKVEEAYKFLE-------EMGNKGYPPDIVTYNCFLKVL-----------------------CDNKNG---D- 359 (499)
Q Consensus 314 l~~~~~~g~~~~a~~~~~-------~m~~~~~~p~~~~~~~li~~~-----------------------~~~g~~---~- 359 (499)
...+...|-..+|..+++ -...+....+...|-.+-++| -..+.. |
T Consensus 678 akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~ 757 (1238)
T KOG1127|consen 678 AKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDL 757 (1238)
T ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhH
Confidence 222333332222332222 222221111222222222221 111111 1
Q ss_pred --HHHHHHHHHHHCCCCcChhhHHHHHHHHHh----cC----CchHHHHHHHHHhHCCCCCCHHHHHHHHHHHHhCCCHH
Q 036198 360 --EALRLYGRMIEVGCWPSVQTYNMLISMYFE----LG----EPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVE 429 (499)
Q Consensus 360 --~a~~~~~~m~~~~~~~~~~~~~~li~~~~~----~~----~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~ 429 (499)
-+.+.+-.-. ....+..+|..|...|.+ .+ +...|...++...+.. .-+..+|+.|--. ...|.+.
T Consensus 758 l~Lg~~c~~~hl--sl~~~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L~-ann~~~WnaLGVl-sg~gnva 833 (1238)
T KOG1127|consen 758 LFLGYECGIAHL--SLAIHMYPWYNLGINYLRYFLLLGETMKDACTAIRCCKKAVSLC-ANNEGLWNALGVL-SGIGNVA 833 (1238)
T ss_pred HHHHHHHhhHHH--HHhhccchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHHh-hccHHHHHHHHHh-hccchhh
Confidence 0001110000 111233444444444433 12 2335677777665531 2245556655444 5567777
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcChhHHHHHH
Q 036198 430 EACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHMRKFYNPVIARRLA 486 (499)
Q Consensus 430 ~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~ 486 (499)
-|...|-+-.... +-...+|..+.-.|.+..+++.|...|.+.+...|.....+.+
T Consensus 834 ~aQHCfIks~~se-p~~~~~W~NlgvL~l~n~d~E~A~~af~~~qSLdP~nl~~WlG 889 (1238)
T KOG1127|consen 834 CAQHCFIKSRFSE-PTCHCQWLNLGVLVLENQDFEHAEPAFSSVQSLDPLNLVQWLG 889 (1238)
T ss_pred hhhhhhhhhhhcc-ccchhheeccceeEEecccHHHhhHHHHhhhhcCchhhHHHHH
Confidence 7777666555443 3356688888888899999999999999998887777665554
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.0013 Score=53.57 Aligned_cols=126 Identities=12% Similarity=0.028 Sum_probs=73.6
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCc--ChhhHHHHHHHHHhcCCchHHHHHHHHHhHCCCCCCH--HHHHHHH
Q 036198 344 TYNCFLKVLCDNKNGDEALRLYGRMIEVGCWP--SVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDV--DTYCVMI 419 (499)
Q Consensus 344 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~--~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~--~~~~~li 419 (499)
.|..++..+ ..++...+...++.+.+....- .....-.+...+...|++++|...|+...+....|+. ...-.+.
T Consensus 14 ~y~~~~~~~-~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA 92 (145)
T PF09976_consen 14 LYEQALQAL-QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLA 92 (145)
T ss_pred HHHHHHHHH-HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHH
Confidence 344444444 3667777777777776643111 1122333445666777777777777777765422221 2333455
Q ss_pred HHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 036198 420 DGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDH 472 (499)
Q Consensus 420 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~ 472 (499)
..+...|++++|+..++...... .....+....+.|.+.|++++|...|+.
T Consensus 93 ~~~~~~~~~d~Al~~L~~~~~~~--~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 93 RILLQQGQYDEALATLQQIPDEA--FKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHcCCHHHHHHHHHhccCcc--hHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 66667777777777776533322 2344555666777777777777777764
|
|
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.00033 Score=52.17 Aligned_cols=80 Identities=14% Similarity=0.158 Sum_probs=68.8
Q ss_pred HHHHHHHHhcCCchHHHHHHHHHhHCCC-CCCHHHHHHHHHHHHhCC--------CHHHHHHHHHHHHHCCCCCCHHHHH
Q 036198 381 NMLISMYFELGEPDGAFETWHEMDKRGC-AQDVDTYCVMIDGLFDCS--------KVEEACFLLEEVVNKGLKLPYRKFD 451 (499)
Q Consensus 381 ~~li~~~~~~~~~~~a~~~~~~m~~~~~-~p~~~~~~~li~~~~~~g--------~~~~a~~~~~~m~~~~~~p~~~~~~ 451 (499)
...|..|...+++.....+|+.+++.|+ .|+..+|+.++.+.++.. ++-+++.++++|...+++|+..+|+
T Consensus 29 i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYn 108 (120)
T PF08579_consen 29 IDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYN 108 (120)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHH
Confidence 4556666677999999999999999999 899999999999988642 3456788999999999999999999
Q ss_pred HHHHHHHhc
Q 036198 452 SYLMQLSVI 460 (499)
Q Consensus 452 ~ll~~~~~~ 460 (499)
.++..+.+.
T Consensus 109 ivl~~Llkg 117 (120)
T PF08579_consen 109 IVLGSLLKG 117 (120)
T ss_pred HHHHHHHHh
Confidence 999888653
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.00083 Score=63.63 Aligned_cols=124 Identities=14% Similarity=0.159 Sum_probs=82.7
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHhhcCCCCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHH
Q 036198 180 LNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEF 259 (499)
Q Consensus 180 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~~~~~la~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 259 (499)
-.+|+..+...++++.|.++|+++.+. .|+ ....+++.+...++-.+|.+++++
T Consensus 172 v~~Ll~~l~~t~~~~~ai~lle~L~~~------------------------~pe--v~~~LA~v~l~~~~E~~AI~ll~~ 225 (395)
T PF09295_consen 172 VDTLLKYLSLTQRYDEAIELLEKLRER------------------------DPE--VAVLLARVYLLMNEEVEAIRLLNE 225 (395)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHhc------------------------CCc--HHHHHHHHHHhcCcHHHHHHHHHH
Confidence 345556666667777777777777652 133 334466666667777777777777
Q ss_pred HHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 036198 260 MRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMG 334 (499)
Q Consensus 260 m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~ 334 (499)
..+.. +-+......-...+.+.++++.|+.+.+++.+.. +.+-.+|..|..+|.+.|+++.|+-.++.+.
T Consensus 226 aL~~~----p~d~~LL~~Qa~fLl~k~~~~lAL~iAk~av~ls-P~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 226 ALKEN----PQDSELLNLQAEFLLSKKKYELALEIAKKAVELS-PSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred HHHhC----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 77653 3456666666667777777777777777777652 2334477777777777777777777776653
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.00089 Score=63.43 Aligned_cols=120 Identities=16% Similarity=0.217 Sum_probs=58.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcChhhHHHHHHHHHhcC
Q 036198 312 EVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELG 391 (499)
Q Consensus 312 ~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~ 391 (499)
.|++.+...++++.|.++|+++.+.. |+ ....++..+...++..+|.+++++..+.. +-+......-...+.+.+
T Consensus 174 ~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~k~ 248 (395)
T PF09295_consen 174 TLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLSKK 248 (395)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcC
Confidence 34444444555555555555555542 22 22334444444555555555555555332 123334444444455555
Q ss_pred CchHHHHHHHHHhHCCCCCCH-HHHHHHHHHHHhCCCHHHHHHHHHHH
Q 036198 392 EPDGAFETWHEMDKRGCAQDV-DTYCVMIDGLFDCSKVEEACFLLEEV 438 (499)
Q Consensus 392 ~~~~a~~~~~~m~~~~~~p~~-~~~~~li~~~~~~g~~~~a~~~~~~m 438 (499)
+.+.|.++.+++.+. .|+. .+|..|..+|...|++++|+..++.+
T Consensus 249 ~~~lAL~iAk~av~l--sP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~ 294 (395)
T PF09295_consen 249 KYELALEIAKKAVEL--SPSEFETWYQLAECYIQLGDFENALLALNSC 294 (395)
T ss_pred CHHHHHHHHHHHHHh--CchhHHHHHHHHHHHHhcCCHHHHHHHHhcC
Confidence 555555555555443 2322 35555555555555555555555443
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.71 E-value=5.1e-05 Score=43.09 Aligned_cols=23 Identities=26% Similarity=0.501 Sum_probs=8.3
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHH
Q 036198 346 NCFLKVLCDNKNGDEALRLYGRM 368 (499)
Q Consensus 346 ~~li~~~~~~g~~~~a~~~~~~m 368 (499)
+++|++|++.|++++|.++|++|
T Consensus 4 ~~li~~~~~~~~~~~a~~~~~~M 26 (31)
T PF01535_consen 4 NSLISGYCKMGQFEEALEVFDEM 26 (31)
T ss_pred HHHHHHHHccchHHHHHHHHHHH
Confidence 33333333333333333333333
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.70 E-value=5.3e-05 Score=43.03 Aligned_cols=29 Identities=38% Similarity=0.828 Sum_probs=16.0
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 036198 309 TYKEVLEGMCLAGKVEEAYKFLEEMGNKG 337 (499)
Q Consensus 309 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~~ 337 (499)
+|+.++++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 45555555555555555555555555544
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.0017 Score=50.72 Aligned_cols=101 Identities=16% Similarity=0.107 Sum_probs=56.1
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHhHCCC--CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCC--CCHHHHHHHHH
Q 036198 380 YNMLISMYFELGEPDGAFETWHEMDKRGC--AQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLK--LPYRKFDSYLM 455 (499)
Q Consensus 380 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~--~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~--p~~~~~~~ll~ 455 (499)
+..+...+.+.|++++|.+.+..+.+... ......+..+..++.+.|++++|...++.+...... .....+..+..
T Consensus 5 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~ 84 (119)
T TIGR02795 5 YYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGM 84 (119)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHH
Confidence 34445555566666666666666654311 011234445566666666666666666666554211 12344555556
Q ss_pred HHHhcCCHHHHHHHHHHHHhhcChh
Q 036198 456 QLSVIGDLGAIHKLSDHMRKFYNPV 480 (499)
Q Consensus 456 ~~~~~g~~~~a~~~~~~m~~~~~~~ 480 (499)
++.+.|+.++|.+.++++.+.++..
T Consensus 85 ~~~~~~~~~~A~~~~~~~~~~~p~~ 109 (119)
T TIGR02795 85 SLQELGDKEKAKATLQQVIKRYPGS 109 (119)
T ss_pred HHHHhCChHHHHHHHHHHHHHCcCC
Confidence 6666666666666666666665553
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.0014 Score=59.89 Aligned_cols=133 Identities=16% Similarity=0.266 Sum_probs=75.2
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcChhhHHHHHHH-HHhcCCchHHHHHHHHHhHCCCCCCHHHHHHHHHHH
Q 036198 344 TYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISM-YFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGL 422 (499)
Q Consensus 344 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~-~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~ 422 (499)
+|..++....+.+..+.|..+|.+..+.+ ..+...|...... |...++.+.|.++|+...+. ...+...|...++.+
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l 80 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFL 80 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHH
Confidence 56666666666666777777777766432 1222333322222 12234555577777766554 344555666666666
Q ss_pred HhCCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCh
Q 036198 423 FDCSKVEEACFLLEEVVNKGLKLP---YRKFDSYLMQLSVIGDLGAIHKLSDHMRKFYNP 479 (499)
Q Consensus 423 ~~~g~~~~a~~~~~~m~~~~~~p~---~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~ 479 (499)
...|+.+.|..+|++.... +.++ ...|..+++-=.+.|+++.+.++.+++.+.++.
T Consensus 81 ~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~ 139 (280)
T PF05843_consen 81 IKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPE 139 (280)
T ss_dssp HHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTT
T ss_pred HHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhh
Confidence 6777777777777766644 2222 236666666666777777777777777776655
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.0015 Score=55.21 Aligned_cols=120 Identities=15% Similarity=0.212 Sum_probs=84.3
Q ss_pred CCHHHHHHHHHHHhcc-hhhhhhHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhCC
Q 036198 113 HEPLAYNLMIDILSST-KYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLMILKQYTEKIKVKTQPEINALNLLLDALCKCG 191 (499)
Q Consensus 113 ~~~~~~~~li~~~~~~-~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~li~~~~~~g 191 (499)
.|..+|..++..+... ..+.|..+-...-++.|.+-| +.-|..+|+.|++.+=+ |
T Consensus 45 k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efg-----------------------v~kDL~~Y~~LLDvFPK-g 100 (228)
T PF06239_consen 45 KDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFG-----------------------VEKDLEVYKALLDVFPK-G 100 (228)
T ss_pred ccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcC-----------------------CcccHHHHHHHHHhCCC-C
Confidence 4788899999988853 347889999889999998877 67899999999999976 4
Q ss_pred ChHHHHHHHHHhhcCCCCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH-hHHHHHHHHHH
Q 036198 192 LVDYAETICKRVKNKVKPNANTYNILGMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMV-TEAADLFEFMR 261 (499)
Q Consensus 192 ~~~~A~~~~~~m~~~~~p~~~~~~~la~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~-~~a~~~~~~m~ 261 (499)
.+- -..+|..+--..+... ..+.+++++|...|+-||..++..+++.+++.+.. .+..++.-.|.
T Consensus 101 ~fv-p~n~fQ~~F~hyp~Qq----~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~p~~K~~rmmYWmp 166 (228)
T PF06239_consen 101 KFV-PRNFFQAEFMHYPRQQ----ECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSHPMKKYRRMMYWMP 166 (228)
T ss_pred Ccc-cccHHHHHhccCcHHH----HHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 332 2223333221111111 11888999999999999999999999999887763 33444444443
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.0031 Score=49.19 Aligned_cols=100 Identities=13% Similarity=0.031 Sum_probs=51.7
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC--CcCHHhHHHH
Q 036198 236 TYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGC--LPDVSTYKEV 313 (499)
Q Consensus 236 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~--~~~~~~~~~l 313 (499)
++..+...+.+.|++++|.+.|+.+.+.... .......+..+...+.+.|++++|.+.|+.+....- ......+..+
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~ 82 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPK-STYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKL 82 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-ccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHH
Confidence 3444555556666666666666666554311 011133444555566666666666666666554310 1112344445
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhC
Q 036198 314 LEGMCLAGKVEEAYKFLEEMGNK 336 (499)
Q Consensus 314 l~~~~~~g~~~~a~~~~~~m~~~ 336 (499)
..++.+.|+.++|.+.++++.+.
T Consensus 83 ~~~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 83 GMSLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHHHhCChHHHHHHHHHHHHH
Confidence 55555566666666666655554
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.0018 Score=47.78 Aligned_cols=93 Identities=17% Similarity=0.129 Sum_probs=50.6
Q ss_pred HHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHH
Q 036198 238 NTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGM 317 (499)
Q Consensus 238 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~ 317 (499)
..+...+...|++++|...+++..+.. +.+...+..+...+...+++++|.+.++...+.. +.+..++..+...+
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~ 78 (100)
T cd00189 4 LNLGNLYYKLGDYDEALEYYEKALELD----PDNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAY 78 (100)
T ss_pred HHHHHHHHHHhcHHHHHHHHHHHHhcC----CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHH
Confidence 344555555666666666666665543 2233455555555566666666666666655543 22334455555555
Q ss_pred HhcCCHHHHHHHHHHHHh
Q 036198 318 CLAGKVEEAYKFLEEMGN 335 (499)
Q Consensus 318 ~~~g~~~~a~~~~~~m~~ 335 (499)
...|+++.|...+....+
T Consensus 79 ~~~~~~~~a~~~~~~~~~ 96 (100)
T cd00189 79 YKLGKYEEALEAYEKALE 96 (100)
T ss_pred HHHHhHHHHHHHHHHHHc
Confidence 555666666555555443
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.0015 Score=48.23 Aligned_cols=93 Identities=16% Similarity=0.226 Sum_probs=46.5
Q ss_pred HHHHHHHhcCCchHHHHHHHHHhHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 036198 382 MLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIG 461 (499)
Q Consensus 382 ~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g 461 (499)
.+...+...|++++|...++...+.. +.+...+..+...+...|++++|.+.++....... .+..++..+...+...|
T Consensus 5 ~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 82 (100)
T cd00189 5 NLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELDP-DNAKAYYNLGLAYYKLG 82 (100)
T ss_pred HHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-cchhHHHHHHHHHHHHH
Confidence 34444445555555555555554431 11223444445555555555555555555554432 23345555555555566
Q ss_pred CHHHHHHHHHHHHhh
Q 036198 462 DLGAIHKLSDHMRKF 476 (499)
Q Consensus 462 ~~~~a~~~~~~m~~~ 476 (499)
++++|...+....+.
T Consensus 83 ~~~~a~~~~~~~~~~ 97 (100)
T cd00189 83 KYEEALEAYEKALEL 97 (100)
T ss_pred hHHHHHHHHHHHHcc
Confidence 666666655555443
|
|
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.0027 Score=53.65 Aligned_cols=83 Identities=25% Similarity=0.320 Sum_probs=47.3
Q ss_pred CCHHHHHHHHHHHHH-----cCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhc----------------CCHHHHHH
Q 036198 270 PTAKTYAIMIVALVQ-----NDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLA----------------GKVEEAYK 328 (499)
Q Consensus 270 p~~~~~~~ll~~~~~-----~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~----------------g~~~~a~~ 328 (499)
.+-.+|..++..+.+ .|..+=....+..|.+-|+.-|..+|+.|++.+=+. .+-+-|++
T Consensus 45 k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i~ 124 (228)
T PF06239_consen 45 KDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAID 124 (228)
T ss_pred ccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHHH
Confidence 355666666666654 355666666667777777777777777777665431 12334444
Q ss_pred HHHHHHhCCCCCCHhhHHHHHHHH
Q 036198 329 FLEEMGNKGYPPDIVTYNCFLKVL 352 (499)
Q Consensus 329 ~~~~m~~~~~~p~~~~~~~li~~~ 352 (499)
++++|+..|+-||..++..+++.+
T Consensus 125 lL~qME~~gV~Pd~Et~~~ll~iF 148 (228)
T PF06239_consen 125 LLEQMENNGVMPDKETEQMLLNIF 148 (228)
T ss_pred HHHHHHHcCCCCcHHHHHHHHHHh
Confidence 445555555555555555444444
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.0045 Score=56.66 Aligned_cols=144 Identities=11% Similarity=0.161 Sum_probs=99.5
Q ss_pred HHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHH-HHHcCCHHHHHHHHHHHHHcCCCcCHHhHHHH
Q 036198 235 FTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVA-LVQNDRMEECFSLLGHMINSGCLPDVSTYKEV 313 (499)
Q Consensus 235 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~-~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l 313 (499)
.+|..+|+..-+.+..+.|..+|.+..+.+ ..+...|-..... |...++.+.|..+|+...+. +..+...+..-
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~----~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y 76 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK----RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEY 76 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC----CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC----CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHH
Confidence 467888888888888999999999998654 2233344333333 23356677799999988876 45677778888
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCH---hhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcChhhHHHHHHH
Q 036198 314 LEGMCLAGKVEEAYKFLEEMGNKGYPPDI---VTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISM 386 (499)
Q Consensus 314 l~~~~~~g~~~~a~~~~~~m~~~~~~p~~---~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~ 386 (499)
++.+.+.|+.+.|..+|+..... +.++. ..|...+..=.+.|+.+.+.++.+++.+. .|+...+..+++-
T Consensus 77 ~~~l~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~--~~~~~~~~~f~~r 149 (280)
T PF05843_consen 77 LDFLIKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL--FPEDNSLELFSDR 149 (280)
T ss_dssp HHHHHHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH--TTTS-HHHHHHCC
T ss_pred HHHHHHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--hhhhhHHHHHHHH
Confidence 88888999999999999988766 33222 47888888888889999999998888774 3444444444443
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.048 Score=48.64 Aligned_cols=182 Identities=8% Similarity=0.018 Sum_probs=108.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCH-HhH---HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHH
Q 036198 272 AKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDV-STY---KEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNC 347 (499)
Q Consensus 272 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~-~~~---~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ 347 (499)
...+-.....+...|++++|.+.|+++...- |+. ... -.+..++.+.+++++|...+++..+.........|..
T Consensus 32 ~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~y--P~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~ 109 (243)
T PRK10866 32 PSEIYATAQQKLQDGNWKQAITQLEALDNRY--PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVL 109 (243)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHH
Confidence 3333334445566788888888888887652 322 222 3455777888888888888888877643333334444
Q ss_pred HHHHHHH--cC---------------C---HHHHHHHHHHHHHCCCCcChhhHHHHHHHHHhcCCchHHHHHHHHHhHCC
Q 036198 348 FLKVLCD--NK---------------N---GDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRG 407 (499)
Q Consensus 348 li~~~~~--~g---------------~---~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~ 407 (499)
.+.+.+. .+ + ...|...|+++++ -|=...-..+|...+..+.+.
T Consensus 110 Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~---------------~yP~S~ya~~A~~rl~~l~~~- 173 (243)
T PRK10866 110 YMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVR---------------GYPNSQYTTDATKRLVFLKDR- 173 (243)
T ss_pred HHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHH---------------HCcCChhHHHHHHHHHHHHHH-
Confidence 4444331 10 1 1233344444443 333333344555444444332
Q ss_pred CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 036198 408 CAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNK--GLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHMR 474 (499)
Q Consensus 408 ~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~ 474 (499)
-...--.+.+-|.+.|.+..|..-++.+.+. +.+........+..+|...|..++|.++...+.
T Consensus 174 ---la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 174 ---LAKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred ---HHHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 0001124556688889999899889888876 334456677788899999999999888776654
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.14 Score=53.03 Aligned_cols=223 Identities=11% Similarity=-0.013 Sum_probs=152.5
Q ss_pred CHhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHHHH
Q 036198 249 MVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYK 328 (499)
Q Consensus 249 ~~~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~ 328 (499)
+...|+..|-+..+.. .-=...|..|...|....+...|.+.|+...+.. ..+........+.|+...+++.|..
T Consensus 473 ~~~~al~ali~alrld----~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~ 547 (1238)
T KOG1127|consen 473 NSALALHALIRALRLD----VSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFE 547 (1238)
T ss_pred hHHHHHHHHHHHHhcc----cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHH
Confidence 3667777777666654 2235688899999998889999999999988764 3456677788899999999999999
Q ss_pred HHHHHHhCC-CCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcChhhHHHHHHHHHhcCCchHHHHHHHHHhHCC
Q 036198 329 FLEEMGNKG-YPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRG 407 (499)
Q Consensus 329 ~~~~m~~~~-~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~ 407 (499)
+.-..-+.. ...-...|....-.|.+.++...|..-|+...+..+ .|...|..+..+|...|.+..|.++|.+....
T Consensus 548 I~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dP-kD~n~W~gLGeAY~~sGry~~AlKvF~kAs~L- 625 (1238)
T KOG1127|consen 548 ICLRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDP-KDYNLWLGLGEAYPESGRYSHALKVFTKASLL- 625 (1238)
T ss_pred HHHHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCc-hhHHHHHHHHHHHHhcCceehHHHhhhhhHhc-
Confidence 843322221 001122233344556778889999999988887553 57789999999999999999999999888764
Q ss_pred CCCCHHHHHHHHH--HHHhCCCHHHHHHHHHHHHHC------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCh
Q 036198 408 CAQDVDTYCVMID--GLFDCSKVEEACFLLEEVVNK------GLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHMRKFYNP 479 (499)
Q Consensus 408 ~~p~~~~~~~li~--~~~~~g~~~~a~~~~~~m~~~------~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~ 479 (499)
.|+. +|..... .-+..|.+.+|...+...... +-.--..++-.+...+...|-..+|..++++-.+.+--
T Consensus 626 -rP~s-~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~ 703 (1238)
T KOG1127|consen 626 -RPLS-KYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIV 703 (1238)
T ss_pred -CcHh-HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Confidence 4443 3443333 335678899998888776532 11122345555555556667777777777776665443
Q ss_pred h
Q 036198 480 V 480 (499)
Q Consensus 480 ~ 480 (499)
.
T Consensus 704 ~ 704 (1238)
T KOG1127|consen 704 S 704 (1238)
T ss_pred H
Confidence 3
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.017 Score=53.01 Aligned_cols=192 Identities=18% Similarity=0.221 Sum_probs=92.3
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHhHHHH
Q 036198 236 TYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSP--TAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEV 313 (499)
Q Consensus 236 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~p--~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l 313 (499)
.|......|-..|++++|.+.|.+..+.....-.+ -...|......|.+. ++++|...+++ .
T Consensus 37 ~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~---------------A 100 (282)
T PF14938_consen 37 LYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEK---------------A 100 (282)
T ss_dssp HHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHH---------------H
T ss_pred HHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHH---------------H
Confidence 34556667777888888888887664321000001 112222222233222 44444444444 3
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHc-CCHHHHHHHHHHHHH----CCCC-cChhhHHHHHHHH
Q 036198 314 LEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDN-KNGDEALRLYGRMIE----VGCW-PSVQTYNMLISMY 387 (499)
Q Consensus 314 l~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~-g~~~~a~~~~~~m~~----~~~~-~~~~~~~~li~~~ 387 (499)
+..|...|++..|-+.+..+ ...|... |+++.|.+.|++..+ .|.. .-..++..+...+
T Consensus 101 ~~~y~~~G~~~~aA~~~~~l---------------A~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~ 165 (282)
T PF14938_consen 101 IEIYREAGRFSQAAKCLKEL---------------AEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLY 165 (282)
T ss_dssp HHHHHHCT-HHHHHHHHHHH---------------HHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHH
T ss_pred HHHHHhcCcHHHHHHHHHHH---------------HHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHH
Confidence 44555666666554444433 2334444 666666666666543 1211 1123455666667
Q ss_pred HhcCCchHHHHHHHHHhHCCCC-----CCHH-HHHHHHHHHHhCCCHHHHHHHHHHHHHC--CCCCC--HHHHHHHHHHH
Q 036198 388 FELGEPDGAFETWHEMDKRGCA-----QDVD-TYCVMIDGLFDCSKVEEACFLLEEVVNK--GLKLP--YRKFDSYLMQL 457 (499)
Q Consensus 388 ~~~~~~~~a~~~~~~m~~~~~~-----p~~~-~~~~li~~~~~~g~~~~a~~~~~~m~~~--~~~p~--~~~~~~ll~~~ 457 (499)
.+.|++++|.++|++....-.. .+.. .|-..+-++...|+.-.|...+++.... ++..+ ......|+.+|
T Consensus 166 ~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~ 245 (282)
T PF14938_consen 166 ARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAY 245 (282)
T ss_dssp HHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHH
Confidence 7777777777777776553221 1221 1222223444567777777777776644 23222 33455556555
Q ss_pred H
Q 036198 458 S 458 (499)
Q Consensus 458 ~ 458 (499)
-
T Consensus 246 ~ 246 (282)
T PF14938_consen 246 E 246 (282)
T ss_dssp H
T ss_pred H
Confidence 3
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.027 Score=47.38 Aligned_cols=93 Identities=11% Similarity=0.033 Sum_probs=67.0
Q ss_pred CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHhHH
Q 036198 233 DNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSP-TAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYK 311 (499)
Q Consensus 233 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~ 311 (499)
....+..+...+...|++++|...|++..+.... .+ ....+..+...+.+.|++++|...+.+..+.. +.+...+.
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~ 110 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEED--PNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-PKQPSALN 110 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhc--cchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHH
Confidence 4456777788888899999999999988875421 12 24677888888888999999999998888753 23455666
Q ss_pred HHHHHHHhcCCHHHHHH
Q 036198 312 EVLEGMCLAGKVEEAYK 328 (499)
Q Consensus 312 ~ll~~~~~~g~~~~a~~ 328 (499)
.+...+...|+...+..
T Consensus 111 ~lg~~~~~~g~~~~a~~ 127 (172)
T PRK02603 111 NIAVIYHKRGEKAEEAG 127 (172)
T ss_pred HHHHHHHHcCChHhHhh
Confidence 66777777776555443
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.16 Score=47.10 Aligned_cols=111 Identities=12% Similarity=0.070 Sum_probs=84.4
Q ss_pred HhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcChhhHHHHHHHHHhcCCchHHHHHHHHHhHCCCCCCHHHHHHHHHH
Q 036198 342 IVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDG 421 (499)
Q Consensus 342 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~ 421 (499)
..+.+..|.-+...|+...|.++-.+.. + |+..-|-.-+.+++..++|++..++... + -++..|..++.+
T Consensus 177 ~~Sl~~Ti~~li~~~~~k~A~kl~k~Fk---v-~dkrfw~lki~aLa~~~~w~eL~~fa~s---k---KsPIGyepFv~~ 246 (319)
T PF04840_consen 177 GLSLNDTIRKLIEMGQEKQAEKLKKEFK---V-PDKRFWWLKIKALAENKDWDELEKFAKS---K---KSPIGYEPFVEA 246 (319)
T ss_pred cCCHHHHHHHHHHCCCHHHHHHHHHHcC---C-cHHHHHHHHHHHHHhcCCHHHHHHHHhC---C---CCCCChHHHHHH
Confidence 3455666777788899888888866652 3 8899999999999999999988876543 1 244789999999
Q ss_pred HHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 036198 422 LFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDH 472 (499)
Q Consensus 422 ~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~ 472 (499)
|.+.|+..+|..++..+ .+..-+..|.+.|++.+|.+...+
T Consensus 247 ~~~~~~~~eA~~yI~k~----------~~~~rv~~y~~~~~~~~A~~~A~~ 287 (319)
T PF04840_consen 247 CLKYGNKKEASKYIPKI----------PDEERVEMYLKCGDYKEAAQEAFK 287 (319)
T ss_pred HHHCCCHHHHHHHHHhC----------ChHHHHHHHHHCCCHHHHHHHHHH
Confidence 99999999999988772 124556677888888888665443
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.027 Score=47.35 Aligned_cols=91 Identities=9% Similarity=-0.004 Sum_probs=64.2
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcC--HHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHH
Q 036198 271 TAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPD--VSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCF 348 (499)
Q Consensus 271 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~--~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l 348 (499)
....+..+...+...|++++|...|++..+....+. ...+..+...+.+.|++++|...+.+..+.... +...+..+
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l 112 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPK-QPSALNNI 112 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-cHHHHHHH
Confidence 345677777788888999999999988876532222 356777788888889999998888887775322 45566666
Q ss_pred HHHHHHcCCHHHHH
Q 036198 349 LKVLCDNKNGDEAL 362 (499)
Q Consensus 349 i~~~~~~g~~~~a~ 362 (499)
...+...|+...+.
T Consensus 113 g~~~~~~g~~~~a~ 126 (172)
T PRK02603 113 AVIYHKRGEKAEEA 126 (172)
T ss_pred HHHHHHcCChHhHh
Confidence 66777766654433
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.18 Score=46.89 Aligned_cols=127 Identities=16% Similarity=0.143 Sum_probs=97.2
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcChhhHHHHHHH
Q 036198 307 VSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISM 386 (499)
Q Consensus 307 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~ 386 (499)
..+.+..+.-+...|+...|.++-.+.. .|+..-|...+.+++..+++++..++... +-++.-|...+.+
T Consensus 177 ~~Sl~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~ 246 (319)
T PF04840_consen 177 GLSLNDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEA 246 (319)
T ss_pred cCCHHHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHH
Confidence 3455666777888999988888877663 37999999999999999999988876432 2355899999999
Q ss_pred HHhcCCchHHHHHHHHHhHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 036198 387 YFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSV 459 (499)
Q Consensus 387 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 459 (499)
|.+.|+..+|..++..+ .+..-+..|.+.|++.+|.+...+.. |...+..+...+..
T Consensus 247 ~~~~~~~~eA~~yI~k~----------~~~~rv~~y~~~~~~~~A~~~A~~~k------d~~~L~~i~~~~~~ 303 (319)
T PF04840_consen 247 CLKYGNKKEASKYIPKI----------PDEERVEMYLKCGDYKEAAQEAFKEK------DIDLLKQILKRCPG 303 (319)
T ss_pred HHHCCCHHHHHHHHHhC----------ChHHHHHHHHHCCCHHHHHHHHHHcC------CHHHHHHHHHHCCC
Confidence 99999999999988872 23677888999999999988765432 55555555544433
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.00069 Score=49.27 Aligned_cols=79 Identities=25% Similarity=0.315 Sum_probs=32.4
Q ss_pred CCHHHHHHHHHHHHHCCCC-cChhhHHHHHHHHHhcCCchHHHHHHHHHhHCCCCCCHHHHHHHHHHHHhCCCHHHHHHH
Q 036198 356 KNGDEALRLYGRMIEVGCW-PSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFL 434 (499)
Q Consensus 356 g~~~~a~~~~~~m~~~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~ 434 (499)
|+++.|..+++++.+.... ++...+-.+..+|.+.|++++|..+++. .+.+. .+....-.+..+|.+.|++++|.+.
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~-~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDP-SNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHH-CHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCC-CCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 4555555555555543211 1222333345555555555555555544 11100 1112222334444555555555555
Q ss_pred HH
Q 036198 435 LE 436 (499)
Q Consensus 435 ~~ 436 (499)
++
T Consensus 81 l~ 82 (84)
T PF12895_consen 81 LE 82 (84)
T ss_dssp HH
T ss_pred Hh
Confidence 44
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.0006 Score=49.56 Aligned_cols=81 Identities=15% Similarity=0.078 Sum_probs=40.0
Q ss_pred cCCchHHHHHHHHHhHCCC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 036198 390 LGEPDGAFETWHEMDKRGC-AQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHK 468 (499)
Q Consensus 390 ~~~~~~a~~~~~~m~~~~~-~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~ 468 (499)
.|+++.|+.+++++.+... .|+...+-.+..+|.+.|++++|..+++. .+.+. .+......+..+|.+.|++++|.+
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~-~~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDP-SNPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHH-CHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCC-CCHHHHHHHHHHHHHhCCHHHHHH
Confidence 3556666666666655422 11233333455666666666666666655 22211 122333344556666666666666
Q ss_pred HHHH
Q 036198 469 LSDH 472 (499)
Q Consensus 469 ~~~~ 472 (499)
++++
T Consensus 80 ~l~~ 83 (84)
T PF12895_consen 80 ALEK 83 (84)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 6554
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.11 Score=46.43 Aligned_cols=184 Identities=9% Similarity=-0.000 Sum_probs=110.7
Q ss_pred CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCCCCHHHH---HHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHh
Q 036198 233 DNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTY---AIMIVALVQNDRMEECFSLLGHMINSGCLPDVST 309 (499)
Q Consensus 233 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~p~~~~~---~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~ 309 (499)
+...+-.....+.+.|++++|.+.|+.+..... -+...- -.+..++.+.+++++|...+++..+.--.-...-
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP----~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~ 106 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRYP----FGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNID 106 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC----CChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchH
Confidence 333343455566778999999999999998752 222332 4566788899999999999999987632222233
Q ss_pred HHHHHHHHHh--cC---------------CH---HHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHH
Q 036198 310 YKEVLEGMCL--AG---------------KV---EEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMI 369 (499)
Q Consensus 310 ~~~ll~~~~~--~g---------------~~---~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 369 (499)
|...+.+.+. .+ +. ..|.+.|+.+.+ -|-...-..+|...+..+.
T Consensus 107 ~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~---------------~yP~S~ya~~A~~rl~~l~ 171 (243)
T PRK10866 107 YVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVR---------------GYPNSQYTTDATKRLVFLK 171 (243)
T ss_pred HHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHH---------------HCcCChhHHHHHHHHHHHH
Confidence 4444444332 11 11 233344444443 3333333445554444443
Q ss_pred HCCCCcChhhHHHHHHHHHhcCCchHHHHHHHHHhHC--CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 036198 370 EVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKR--GCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVV 439 (499)
Q Consensus 370 ~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~--~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 439 (499)
.. .-..- -.+..-|.+.|.+..|..-++.+.+. +.+........++.+|...|..++|......+.
T Consensus 172 ~~---la~~e-~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 172 DR---LAKYE-LSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HH---HHHHH-HHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 21 11111 24556677888888888888888764 333344566677788888888888877766543
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.035 Score=55.33 Aligned_cols=61 Identities=18% Similarity=0.155 Sum_probs=30.2
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcChhhHHHHHHHHHhcCCchHHHHHHHHHhH
Q 036198 343 VTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDK 405 (499)
Q Consensus 343 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 405 (499)
..|.++.......|++++|...+++..+.+ |+...|..+...+...|+.++|.+.+++...
T Consensus 421 ~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~ 481 (517)
T PRK10153 421 RIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFN 481 (517)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 344444333334455555555555555433 3444555555555555555555555555443
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.012 Score=56.03 Aligned_cols=102 Identities=14% Similarity=0.074 Sum_probs=79.7
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCcChhhHHHHHHHHHhcCCchHHHHHHHHHhHCCCCCCHHHHHHHHHHHHhCCCH
Q 036198 349 LKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKV 428 (499)
Q Consensus 349 i~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~ 428 (499)
...+...|++++|...|.+.++... -+...|..+..+|...|++++|...++...+.. +.+...|..+..+|...|++
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~~P-~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg~~ 86 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDLDP-NNAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLEEY 86 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCCH
Confidence 4556678999999999999988652 356778888889999999999999999988763 23566788888889999999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHH
Q 036198 429 EEACFLLEEVVNKGLKLPYRKFDSYL 454 (499)
Q Consensus 429 ~~a~~~~~~m~~~~~~p~~~~~~~ll 454 (499)
++|...|++....+ |+......++
T Consensus 87 ~eA~~~~~~al~l~--P~~~~~~~~l 110 (356)
T PLN03088 87 QTAKAALEKGASLA--PGDSRFTKLI 110 (356)
T ss_pred HHHHHHHHHHHHhC--CCCHHHHHHH
Confidence 99999999988765 4444444443
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.013 Score=55.68 Aligned_cols=93 Identities=14% Similarity=0.009 Sum_probs=77.7
Q ss_pred HHHHHHhcCCHhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHh
Q 036198 240 AIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCL 319 (499)
Q Consensus 240 li~~~~~~g~~~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~ 319 (499)
-...+...|++++|++.|++..+.. +-+...|..+..+|...|++++|+..+++..+.. +.+...|..+..+|..
T Consensus 8 ~a~~a~~~~~~~~Ai~~~~~Al~~~----P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~ 82 (356)
T PLN03088 8 KAKEAFVDDDFALAVDLYTQAIDLD----PNNAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMK 82 (356)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHH
Confidence 3566778899999999999999876 4567788888889999999999999999998874 3466778888889999
Q ss_pred cCCHHHHHHHHHHHHhCC
Q 036198 320 AGKVEEAYKFLEEMGNKG 337 (499)
Q Consensus 320 ~g~~~~a~~~~~~m~~~~ 337 (499)
.|++++|...|+...+.+
T Consensus 83 lg~~~eA~~~~~~al~l~ 100 (356)
T PLN03088 83 LEEYQTAKAALEKGASLA 100 (356)
T ss_pred hCCHHHHHHHHHHHHHhC
Confidence 999999999999988764
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.045 Score=50.27 Aligned_cols=172 Identities=13% Similarity=0.076 Sum_probs=80.5
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHhhcCCCCChhhHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHhHHHHHH
Q 036198 179 ALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQTLEEMIQMGHAP-DNFTYNTAIDTFCKARMVTEAADLF 257 (499)
Q Consensus 179 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~~~~~la~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~a~~~~ 257 (499)
.|....+.|-..|++++|.+.|.+... +... .+-.. -...|.....+|.+. ++++|.+.+
T Consensus 37 ~y~~Aa~~fk~~~~~~~A~~ay~kAa~---------------~~~~---~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~ 97 (282)
T PF14938_consen 37 LYEKAANCFKLAKDWEKAAEAYEKAAD---------------CYEK---LGDKFEAAKAYEEAANCYKKG-DPDEAIECY 97 (282)
T ss_dssp HHHHHHHHHHHTT-CHHHHHHHHHHHH---------------HHHH---TT-HHHHHHHHHHHHHHHHHT-THHHHHHHH
T ss_pred HHHHHHHHHHHHhccchhHHHHHHHHH---------------HHHH---cCCHHHHHHHHHHHHHHHHhh-CHHHHHHHH
Confidence 455556678888999999888887643 1111 11111 123344444444443 666666666
Q ss_pred HHHHHcCCCCCCCC--HHHHHHHHHHHHHc-CCHHHHHHHHHHHHHc----CCCcC--HHhHHHHHHHHHhcCCHHHHHH
Q 036198 258 EFMRTKGSTISSPT--AKTYAIMIVALVQN-DRMEECFSLLGHMINS----GCLPD--VSTYKEVLEGMCLAGKVEEAYK 328 (499)
Q Consensus 258 ~~m~~~~~~~~~p~--~~~~~~ll~~~~~~-~~~~~a~~~~~~m~~~----~~~~~--~~~~~~ll~~~~~~g~~~~a~~ 328 (499)
++..+.-...-.|+ ...+..+...|... |++++|.+.|.+..+. | .+. ...+..+...+.+.|++++|.+
T Consensus 98 ~~A~~~y~~~G~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~l~~~l~~y~~A~~ 176 (282)
T PF14938_consen 98 EKAIEIYREAGRFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAADLYARLGRYEEAIE 176 (282)
T ss_dssp HHHHHHHHHCT-HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHHHHHHhCCHHHHHH
Confidence 65543110000111 22344444455555 6666666666655432 2 111 2234445555666666666666
Q ss_pred HHHHHHhCCCC-----CCHh-hHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 036198 329 FLEEMGNKGYP-----PDIV-TYNCFLKVLCDNKNGDEALRLYGRMIE 370 (499)
Q Consensus 329 ~~~~m~~~~~~-----p~~~-~~~~li~~~~~~g~~~~a~~~~~~m~~ 370 (499)
+|++....-.. .+.. .|...+-++...|++..|.+.+++...
T Consensus 177 ~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~ 224 (282)
T PF14938_consen 177 IYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCS 224 (282)
T ss_dssp HHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGT
T ss_pred HHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 66665543211 1111 122223344445666666666666554
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.024 Score=45.74 Aligned_cols=98 Identities=12% Similarity=-0.002 Sum_probs=68.5
Q ss_pred HHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHhHHHH
Q 036198 234 NFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEV 313 (499)
Q Consensus 234 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l 313 (499)
....-.+...+...|++++|..+|+.+...+ +-+..-|-.|..++-..|++++|...|....... +-|...+-.+
T Consensus 35 l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~D----p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~a 109 (157)
T PRK15363 35 LNTLYRYAMQLMEVKEFAGAARLFQLLTIYD----AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWAA 109 (157)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC----cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHH
Confidence 3344455566677788888888888777765 3455666667777777788888888887777765 3566667777
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhC
Q 036198 314 LEGMCLAGKVEEAYKFLEEMGNK 336 (499)
Q Consensus 314 l~~~~~~g~~~~a~~~~~~m~~~ 336 (499)
-.++...|+.+.|.+.|+..+..
T Consensus 110 g~c~L~lG~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 110 AECYLACDNVCYAIKALKAVVRI 132 (157)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHH
Confidence 77777788888777777765543
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.014 Score=48.98 Aligned_cols=62 Identities=18% Similarity=0.038 Sum_probs=29.6
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCc--ChhhHHHHHHHHHhcCCchHHHHHHHHHhH
Q 036198 344 TYNCFLKVLCDNKNGDEALRLYGRMIEVGCWP--SVQTYNMLISMYFELGEPDGAFETWHEMDK 405 (499)
Q Consensus 344 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~--~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 405 (499)
.|..+...+...|++++|...|++.......+ ...++..+...+...|+.++|.+.++....
T Consensus 37 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~ 100 (168)
T CHL00033 37 TYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALE 100 (168)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34444444445555555555555554332111 122444555555555555555555555443
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.0034 Score=42.89 Aligned_cols=60 Identities=10% Similarity=0.015 Sum_probs=41.2
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCh
Q 036198 419 IDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHMRKFYNP 479 (499)
Q Consensus 419 i~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~ 479 (499)
...+.+.|++++|...|++.++... -+...+..+..++...|++++|..+++++.+..|.
T Consensus 4 a~~~~~~g~~~~A~~~~~~~l~~~P-~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~ 63 (65)
T PF13432_consen 4 ARALYQQGDYDEAIAAFEQALKQDP-DNPEAWYLLGRILYQQGRYDEALAYYERALELDPD 63 (65)
T ss_dssp HHHHHHCTHHHHHHHHHHHHHCCST-THHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence 3456677777777777777776652 25666677777777777777777777777766554
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.35 Score=45.77 Aligned_cols=197 Identities=10% Similarity=0.084 Sum_probs=112.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHhHHH-------HHHHHHh----cCCHHHHHHHHHHHHhCCCCC
Q 036198 272 AKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKE-------VLEGMCL----AGKVEEAYKFLEEMGNKGYPP 340 (499)
Q Consensus 272 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~-------ll~~~~~----~g~~~~a~~~~~~m~~~~~~p 340 (499)
..+|..++....+.++...|.+.+.-+.-. .|+...-.. +-+..|. .-+...-+.+++.....++..
T Consensus 298 i~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~l--dp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiDr 375 (549)
T PF07079_consen 298 IDRFGNLLSFKVKQVQTEEAKQYLALLKIL--DPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDIDR 375 (549)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHhc--CCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcccH
Confidence 456777777788888888888777766543 233322111 1122221 112233344555554443321
Q ss_pred CHhhHHHHHH---HHHHcCC-HHHHHHHHHHHHHCCCCcChhhHHH----HHHHHHh---cCCchHHHHHHHHHhHCCCC
Q 036198 341 DIVTYNCFLK---VLCDNKN-GDEALRLYGRMIEVGCWPSVQTYNM----LISMYFE---LGEPDGAFETWHEMDKRGCA 409 (499)
Q Consensus 341 ~~~~~~~li~---~~~~~g~-~~~a~~~~~~m~~~~~~~~~~~~~~----li~~~~~---~~~~~~a~~~~~~m~~~~~~ 409 (499)
...-..|+. -+-+.|. -++|.++++...+-. .-|..+-|. +=.+|.. ...+.+-.++-+-+.+.|+.
T Consensus 376 -qQLvh~L~~~Ak~lW~~g~~dekalnLLk~il~ft-~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~ 453 (549)
T PF07079_consen 376 -QQLVHYLVFGAKHLWEIGQCDEKALNLLKLILQFT-NYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLT 453 (549)
T ss_pred -HHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCC
Confidence 111222222 2334454 788888888887632 122222222 2223332 24566666666677778877
Q ss_pred CCHHH----HHHHHH--HHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 036198 410 QDVDT----YCVMID--GLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHMR 474 (499)
Q Consensus 410 p~~~~----~~~li~--~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~ 474 (499)
|-... -|.+.+ -+...|++.++.-.-..+.+ +.|++.+|..+.-++....++++|.+++..+.
T Consensus 454 ~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~--iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~LP 522 (549)
T PF07079_consen 454 PITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTK--IAPSPQAYRLLGLCLMENKRYQEAWEYLQKLP 522 (549)
T ss_pred cccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH--hCCcHHHHHHHHHHHHHHhhHHHHHHHHHhCC
Confidence 65433 333433 24467898888766555544 46899999988888889999999999988774
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.022 Score=45.95 Aligned_cols=87 Identities=16% Similarity=0.044 Sum_probs=40.2
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCcChhhHHHHHHHHHhcCCchHHHHHHHHHhHCCCCCCHHHHHHHHHHHHhCCCHHH
Q 036198 351 VLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEE 430 (499)
Q Consensus 351 ~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~ 430 (499)
.+...|++++|.++|+.+..... -+..-|-.|.-+|-..|++++|.+.|........ -|+..+-.+-.++...|+.+.
T Consensus 44 ~ly~~G~l~~A~~~f~~L~~~Dp-~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~-ddp~~~~~ag~c~L~lG~~~~ 121 (157)
T PRK15363 44 QLMEVKEFAGAARLFQLLTIYDA-WSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKI-DAPQAPWAAAECYLACDNVCY 121 (157)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCchHHHHHHHHHHHcCCHHH
Confidence 33445555555555555444321 2233334444444445555555555555444332 234444444444555555555
Q ss_pred HHHHHHHHH
Q 036198 431 ACFLLEEVV 439 (499)
Q Consensus 431 a~~~~~~m~ 439 (499)
|.+.|+...
T Consensus 122 A~~aF~~Ai 130 (157)
T PRK15363 122 AIKALKAVV 130 (157)
T ss_pred HHHHHHHHH
Confidence 555554443
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.0046 Score=42.68 Aligned_cols=61 Identities=18% Similarity=0.288 Sum_probs=38.5
Q ss_pred HhcCCHhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHhHH
Q 036198 245 CKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYK 311 (499)
Q Consensus 245 ~~~g~~~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~ 311 (499)
.+.|++++|+++|+.+.... +-+...+..+..+|.+.|++++|..+++.+... .|+...|.
T Consensus 2 l~~~~~~~A~~~~~~~l~~~----p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~--~~~~~~~~ 62 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRN----PDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ--DPDNPEYQ 62 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHT----TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG--GTTHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCHHHHH
Confidence 35667777777777776664 336666666777777777777777777777665 34544443
|
... |
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.053 Score=44.16 Aligned_cols=122 Identities=16% Similarity=0.164 Sum_probs=71.8
Q ss_pred HHHHHHHH---HHHhCCChHHHHHHHHHhhcC----CCCChh--hHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 036198 178 NALNLLLD---ALCKCGLVDYAETICKRVKNK----VKPNAN--TYNILGMQTLEEMIQMGHAPDNFTYNTAIDTFCKAR 248 (499)
Q Consensus 178 ~~~~~li~---~~~~~g~~~~A~~~~~~m~~~----~~p~~~--~~~~la~~~~~~m~~~g~~p~~~~~~~li~~~~~~g 248 (499)
..|..++. .....|+.+.+.+.+.++..- +-|+.. .|..-....++.+ -..+...++..+...|
T Consensus 4 ~~F~~~~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~-------~~~~~~~l~~~~~~~~ 76 (146)
T PF03704_consen 4 DRFEALVREARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLREL-------YLDALERLAEALLEAG 76 (146)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHH-------HHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHH-------HHHHHHHHHHHHHhcc
Confidence 34444433 345678889998888887652 222322 2322222222222 1224455667777788
Q ss_pred CHhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----cCCCcCHHhH
Q 036198 249 MVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMIN-----SGCLPDVSTY 310 (499)
Q Consensus 249 ~~~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~-----~~~~~~~~~~ 310 (499)
++++|.++.+.+.... +.+...|..+|.+|...|+..+|.++|+.+.+ .|+.|+..+-
T Consensus 77 ~~~~a~~~~~~~l~~d----P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~ 139 (146)
T PF03704_consen 77 DYEEALRLLQRALALD----PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETR 139 (146)
T ss_dssp -HHHHHHHHHHHHHHS----TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHH
T ss_pred CHHHHHHHHHHHHhcC----CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHH
Confidence 8888888888888875 56777888888888888888888888877643 3777776654
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.044 Score=45.90 Aligned_cols=114 Identities=10% Similarity=-0.062 Sum_probs=78.4
Q ss_pred HHHHHHHHHHH-HCCCCcChhhHHHHHHHHHhcCCchHHHHHHHHHhHCCCCC--CHHHHHHHHHHHHhCCCHHHHHHHH
Q 036198 359 DEALRLYGRMI-EVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQ--DVDTYCVMIDGLFDCSKVEEACFLL 435 (499)
Q Consensus 359 ~~a~~~~~~m~-~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p--~~~~~~~li~~~~~~g~~~~a~~~~ 435 (499)
..+...+..+. ..+..--...|..+...+...|++++|...|+........| ...++..+...+...|++++|...+
T Consensus 16 ~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~ 95 (168)
T CHL00033 16 TIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYY 95 (168)
T ss_pred ccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 34444444443 22222234567778888888999999999999987653222 2357888889999999999999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHH-------hcCCHHHHHHHHHHH
Q 036198 436 EEVVNKGLKLPYRKFDSYLMQLS-------VIGDLGAIHKLSDHM 473 (499)
Q Consensus 436 ~~m~~~~~~p~~~~~~~ll~~~~-------~~g~~~~a~~~~~~m 473 (499)
++..... +....++..+...+. ..|+++.|...+++.
T Consensus 96 ~~Al~~~-~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a 139 (168)
T CHL00033 96 FQALERN-PFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQA 139 (168)
T ss_pred HHHHHhC-cCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHH
Confidence 9998764 223555666666666 788877555544443
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.034 Score=45.31 Aligned_cols=130 Identities=23% Similarity=0.241 Sum_probs=63.4
Q ss_pred CHHHHHHHHH---HHHhcCCHhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHh
Q 036198 233 DNFTYNTAID---TFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVST 309 (499)
Q Consensus 233 ~~~~~~~li~---~~~~~g~~~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~ 309 (499)
|...|..++. .....|+.+.+...++++........-|+... ..-.......+..+. ..+
T Consensus 2 D~~~F~~~~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~----------~~W~~~~r~~l~~~~-------~~~ 64 (146)
T PF03704_consen 2 DVDRFEALVREARAAARAGDPEEAIELLEEALALYRGDFLPDLDD----------EEWVEPERERLRELY-------LDA 64 (146)
T ss_dssp HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTT----------STTHHHHHHHHHHHH-------HHH
T ss_pred CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCc----------cHHHHHHHHHHHHHH-------HHH
Confidence 3444545533 34567788888888888876432112222111 000111111111111 123
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHH-----HCCCCcChhhH
Q 036198 310 YKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMI-----EVGCWPSVQTY 380 (499)
Q Consensus 310 ~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~-----~~~~~~~~~~~ 380 (499)
...++..+...|++++|..+.+.+..... .+...|..+|.+|...|+...|.+.|+.+. +.|+.|+..+-
T Consensus 65 ~~~l~~~~~~~~~~~~a~~~~~~~l~~dP-~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~ 139 (146)
T PF03704_consen 65 LERLAEALLEAGDYEEALRLLQRALALDP-YDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETR 139 (146)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHST-T-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHH
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHH
Confidence 44455666667777777777777666532 256667777777777777777777776654 23666665543
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.0055 Score=42.27 Aligned_cols=57 Identities=14% Similarity=0.031 Sum_probs=38.3
Q ss_pred HhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcChh
Q 036198 423 FDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHMRKFYNPV 480 (499)
Q Consensus 423 ~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~ 480 (499)
...|++++|.++|+++...... +...+..+..+|.+.|++++|.++++++.+..+..
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~ 58 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPD-NPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDN 58 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTT-SHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTH
T ss_pred hhccCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCH
Confidence 3567777777777777666532 56666667777777777777777777777766653
|
... |
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.0065 Score=42.04 Aligned_cols=66 Identities=12% Similarity=0.093 Sum_probs=48.6
Q ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhc
Q 036198 411 DVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIG-DLGAIHKLSDHMRKFY 477 (499)
Q Consensus 411 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g-~~~~a~~~~~~m~~~~ 477 (499)
+...|..+...+...|++++|...|++..+... -+...|..+..+|.+.| ++++|.+.+++..+..
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p-~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~ 68 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDP-NNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLD 68 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHST-THHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcC
Confidence 355677777777788888888888888777653 25667777777788887 6888888887776654
|
... |
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.15 Score=44.12 Aligned_cols=82 Identities=13% Similarity=0.046 Sum_probs=40.9
Q ss_pred HHHHHHHHhcCCchHHHHHHHHHhHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHH
Q 036198 381 NMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL--KLPYRKFDSYLMQLS 458 (499)
Q Consensus 381 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~--~p~~~~~~~ll~~~~ 458 (499)
..++.-|=...-..+|...+..+.+. =...--.+..-|.+.|.+..|..-++.+++.=. +-.......++.+|.
T Consensus 114 ~~li~~yP~S~y~~~A~~~l~~l~~~----la~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~ 189 (203)
T PF13525_consen 114 EELIKRYPNSEYAEEAKKRLAELRNR----LAEHELYIARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYY 189 (203)
T ss_dssp HHHHHH-TTSTTHHHHHHHHHHHHHH----HHHHHHHHHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHH
T ss_pred HHHHHHCcCchHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHH
Confidence 33334444444444555544444331 000112345567777777777777777776521 111334556667777
Q ss_pred hcCCHHHH
Q 036198 459 VIGDLGAI 466 (499)
Q Consensus 459 ~~g~~~~a 466 (499)
+.|..+.+
T Consensus 190 ~l~~~~~a 197 (203)
T PF13525_consen 190 KLGLKQAA 197 (203)
T ss_dssp HTT-HHHH
T ss_pred HhCChHHH
Confidence 77776644
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.42 Score=45.18 Aligned_cols=144 Identities=19% Similarity=0.262 Sum_probs=113.3
Q ss_pred HhhHHHHHHHHHHcCCHHHHHHHHHHHHHCC-CCcChhhHHHHHHHHHhcCCchHHHHHHHHHhHCCCCCCHHHH-HHHH
Q 036198 342 IVTYNCFLKVLCDNKNGDEALRLYGRMIEVG-CWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTY-CVMI 419 (499)
Q Consensus 342 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~-~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~-~~li 419 (499)
..+|...+++..+....+.|..+|-++.+.| +.+++..++++|..++ .|+...|.++|+.-... -||...| ...+
T Consensus 397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~--f~d~~~y~~kyl 473 (660)
T COG5107 397 TFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK--FPDSTLYKEKYL 473 (660)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh--CCCchHHHHHHH
Confidence 4567788888889999999999999999998 6688899999999887 68889999999865543 3455444 4566
Q ss_pred HHHHhCCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcChhH-----HHHHHHHH
Q 036198 420 DGLFDCSKVEEACFLLEEVVNKGLKLP--YRKFDSYLMQLSVIGDLGAIHKLSDHMRKFYNPVI-----ARRLALNQ 489 (499)
Q Consensus 420 ~~~~~~g~~~~a~~~~~~m~~~~~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~-----~~~~~~~~ 489 (499)
.-+..-++-+.|..+|+..+.+ +..+ ...|..+|.--..-|+...+..+-++|.+.+|... .++|+|..
T Consensus 474 ~fLi~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~pQen~~evF~Sry~ik~ 549 (660)
T COG5107 474 LFLIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVPQENLIEVFTSRYAIKA 549 (660)
T ss_pred HHHHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcCcHhHHHHHHHHHhhhc
Confidence 6677889999999999966543 1122 55889999988999999999999999999888753 24555543
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.028 Score=50.54 Aligned_cols=102 Identities=15% Similarity=0.147 Sum_probs=66.7
Q ss_pred hHHHHHHHHHhcCCchHHHHHHHHHhHCCCCCCH----HHHHHHHHHHHhCCCHHHHHHHHHHHHHCCC--CCCHHHHHH
Q 036198 379 TYNMLISMYFELGEPDGAFETWHEMDKRGCAQDV----DTYCVMIDGLFDCSKVEEACFLLEEVVNKGL--KLPYRKFDS 452 (499)
Q Consensus 379 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~----~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~--~p~~~~~~~ 452 (499)
.|...+..+.+.|++++|...|+.+.+. .|+. ..+-.+...|...|++++|...|+.+.+.-. +.....+..
T Consensus 145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~--yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~k 222 (263)
T PRK10803 145 DYNAAIALVQDKSRQDDAIVAFQNFVKK--YPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFK 222 (263)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHH
Confidence 4454444445567777777777777664 2332 3555666777778888888888887775421 112444545
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhhcChhHH
Q 036198 453 YLMQLSVIGDLGAIHKLSDHMRKFYNPVIA 482 (499)
Q Consensus 453 ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~ 482 (499)
+...+...|+.++|.++++++.+.||....
T Consensus 223 lg~~~~~~g~~~~A~~~~~~vi~~yP~s~~ 252 (263)
T PRK10803 223 VGVIMQDKGDTAKAKAVYQQVIKKYPGTDG 252 (263)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCcCCHH
Confidence 566677788888888888888888776554
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.21 Score=43.33 Aligned_cols=183 Identities=12% Similarity=0.158 Sum_probs=100.7
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCH--HhHHHH
Q 036198 236 TYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDV--STYKEV 313 (499)
Q Consensus 236 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~--~~~~~l 313 (499)
.+-.....+...|++++|.+.|+.+...... .+-.....-.+..++.+.|+++.|...+++..+.- |+. .-+...
T Consensus 7 ~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~-s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~y--P~~~~~~~A~Y 83 (203)
T PF13525_consen 7 ALYQKALEALQQGDYEEAIKLFEKLIDRYPN-SPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLY--PNSPKADYALY 83 (203)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-STTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH---TT-TTHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC-ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCCcchhhHHH
Confidence 3344556677889999999999999887532 23335566677888999999999999999988652 322 223333
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCC---CHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcChhhHHHHHHHHHhc
Q 036198 314 LEGMCLAGKVEEAYKFLEEMGNKGYPP---DIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFEL 390 (499)
Q Consensus 314 l~~~~~~g~~~~a~~~~~~m~~~~~~p---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 390 (499)
+.+.+......... ........ -...+..++.-|=.+.-..+|...+..+.+. .-. .--.+...|.+.
T Consensus 84 ~~g~~~~~~~~~~~-----~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~---la~-~e~~ia~~Y~~~ 154 (203)
T PF13525_consen 84 MLGLSYYKQIPGIL-----RSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNR---LAE-HELYIARFYYKR 154 (203)
T ss_dssp HHHHHHHHHHHHHH------TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHH---HHH-HHHHHHHHHHCT
T ss_pred HHHHHHHHhCccch-----hcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHH---HHH-HHHHHHHHHHHc
Confidence 33332221111110 00000000 0123444455555555555665555554431 111 112356678888
Q ss_pred CCchHHHHHHHHHhHCCCCCCH----HHHHHHHHHHHhCCCHHHHH
Q 036198 391 GEPDGAFETWHEMDKRGCAQDV----DTYCVMIDGLFDCSKVEEAC 432 (499)
Q Consensus 391 ~~~~~a~~~~~~m~~~~~~p~~----~~~~~li~~~~~~g~~~~a~ 432 (499)
|.+..|..-++.+.+. -|+. .....++.+|.+.|..+.+.
T Consensus 155 ~~y~aA~~r~~~v~~~--yp~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 155 GKYKAAIIRFQYVIEN--YPDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp T-HHHHHHHHHHHHHH--STTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred ccHHHHHHHHHHHHHH--CCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 8888888888888765 2332 34567778888888776443
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.72 Score=47.47 Aligned_cols=219 Identities=15% Similarity=0.110 Sum_probs=132.1
Q ss_pred HHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHHhhhcCCCC
Q 036198 96 KIAFRFFMWAGHQDNYAHEPLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLMILKQYTEKIKVKTQP 175 (499)
Q Consensus 96 ~~a~~~f~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 175 (499)
+.|+.-.....++.+- ..|..++.++... |.|..++|..+++.....+. -
T Consensus 26 kkal~~~~kllkk~Pn----~~~a~vLkaLsl~--r~gk~~ea~~~Le~~~~~~~------------------------~ 75 (932)
T KOG2053|consen 26 KKALAKLGKLLKKHPN----ALYAKVLKALSLF--RLGKGDEALKLLEALYGLKG------------------------T 75 (932)
T ss_pred HHHHHHHHHHHHHCCC----cHHHHHHHHHHHH--HhcCchhHHHHHhhhccCCC------------------------C
Confidence 4566666655555332 3355555555422 78888999988887665542 3
Q ss_pred CHHHHHHHHHHHHhCCChHHHHHHHHHhhcCCCCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHH
Q 036198 176 EINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAAD 255 (499)
Q Consensus 176 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~~~~~la~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~ 255 (499)
|..+...+-..|.+.|+.++|..+|+.... ..|+..-...+..+|.+-+++.+-.+
T Consensus 76 D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~------------------------~~P~eell~~lFmayvR~~~yk~qQk 131 (932)
T KOG2053|consen 76 DDLTLQFLQNVYRDLGKLDEAVHLYERANQ------------------------KYPSEELLYHLFMAYVREKSYKKQQK 131 (932)
T ss_pred chHHHHHHHHHHHHHhhhhHHHHHHHHHHh------------------------hCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 677888899999999999999999998765 34566666677777777777665444
Q ss_pred HHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHcC-CCcCHHhHHHHHHHHHhcCCHH
Q 036198 256 LFEFMRTKGSTISSPTAKTYAIMIVALVQNDR----------MEECFSLLGHMINSG-CLPDVSTYKEVLEGMCLAGKVE 324 (499)
Q Consensus 256 ~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~----------~~~a~~~~~~m~~~~-~~~~~~~~~~ll~~~~~~g~~~ 324 (499)
.--++.+. .+-+...+=++++...+.-. ..-|.+.++.+.+.+ -.-+..-.-.-+..+-..|+++
T Consensus 132 aa~~LyK~----~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~ 207 (932)
T KOG2053|consen 132 AALQLYKN----FPKRAYYFWSVISLILQSIFSENELLDPILLALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQ 207 (932)
T ss_pred HHHHHHHh----CCcccchHHHHHHHHHHhccCCcccccchhHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHH
Confidence 43333332 23344455555555544321 234555556665443 1112222222334455677788
Q ss_pred HHHHHHH-HHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 036198 325 EAYKFLE-EMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVG 372 (499)
Q Consensus 325 ~a~~~~~-~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 372 (499)
+|.+++. ...+.-...+...-+--+..+...+++.+..++-.++...|
T Consensus 208 eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~ 256 (932)
T KOG2053|consen 208 EALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKG 256 (932)
T ss_pred HHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhC
Confidence 8888873 33333223333444455666777788888888887777766
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.14 Score=51.05 Aligned_cols=137 Identities=9% Similarity=-0.067 Sum_probs=75.7
Q ss_pred CCcCHHhHHHHHHHHHhcC-----CHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcC--------CHHHHHHHHHHHH
Q 036198 303 CLPDVSTYKEVLEGMCLAG-----KVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNK--------NGDEALRLYGRMI 369 (499)
Q Consensus 303 ~~~~~~~~~~ll~~~~~~g-----~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g--------~~~~a~~~~~~m~ 369 (499)
.+.+...|...+++..... +.+.|..+|++..+.... ....|..+..++.... +...+.+......
T Consensus 333 ~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~-~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~ 411 (517)
T PRK10153 333 LPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPD-FTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIV 411 (517)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhh
Confidence 3456666777766644322 255677777776665321 2333333333222211 1222333333322
Q ss_pred HC-CCCcChhhHHHHHHHHHhcCCchHHHHHHHHHhHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC
Q 036198 370 EV-GCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKG 442 (499)
Q Consensus 370 ~~-~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 442 (499)
.. ....+...|.++.-.+...|++++|...+++..+.. |+...|..+...+...|+.++|.+.+++....+
T Consensus 412 al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~ 483 (517)
T PRK10153 412 ALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFNLR 483 (517)
T ss_pred hcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 21 122334556666555556677777777777777653 566677777777777777777777777766554
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.51 Score=46.67 Aligned_cols=90 Identities=18% Similarity=0.174 Sum_probs=59.7
Q ss_pred CHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcChhhHHHHHHHHHhcCCchHHHHHHHHHhHCCCCCCH--------
Q 036198 341 DIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDV-------- 412 (499)
Q Consensus 341 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~-------- 412 (499)
+..+...+...+-+...+.-|-++|..|-.. ..+++.....+++++|..+-+...+. .||+
T Consensus 746 ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~---------ksiVqlHve~~~W~eAFalAe~hPe~--~~dVy~pyaqwL 814 (1081)
T KOG1538|consen 746 EREPLLLCATYLKKLDSPGLAAEIFLKMGDL---------KSLVQLHVETQRWDEAFALAEKHPEF--KDDVYMPYAQWL 814 (1081)
T ss_pred hhhHHHHHHHHHhhccccchHHHHHHHhccH---------HHHhhheeecccchHhHhhhhhCccc--cccccchHHHHh
Confidence 3445555555555667777788888777532 34566777888888888887776553 3332
Q ss_pred ---HHHHHHHHHHHhCCCHHHHHHHHHHHHHC
Q 036198 413 ---DTYCVMIDGLFDCSKVEEACFLLEEVVNK 441 (499)
Q Consensus 413 ---~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 441 (499)
.-|...-.+|.++|+-.+|..+++++...
T Consensus 815 AE~DrFeEAqkAfhkAGr~~EA~~vLeQLtnn 846 (1081)
T KOG1538|consen 815 AENDRFEEAQKAFHKAGRQREAVQVLEQLTNN 846 (1081)
T ss_pred hhhhhHHHHHHHHHHhcchHHHHHHHHHhhhh
Confidence 22344456788888889999988887654
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=96.70 E-value=0.34 Score=45.53 Aligned_cols=79 Identities=10% Similarity=0.053 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcC---CCcCHHhHHHHHHHHHh---cCCHHHHHHHHHHHHhCCCCCCHhhHHH
Q 036198 274 TYAIMIVALVQNDRMEECFSLLGHMINSG---CLPDVSTYKEVLEGMCL---AGKVEEAYKFLEEMGNKGYPPDIVTYNC 347 (499)
Q Consensus 274 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~---~~~~~~~~~~ll~~~~~---~g~~~~a~~~~~~m~~~~~~p~~~~~~~ 347 (499)
+...++-.|....+++...++.+.|.... +.-+...--...-++.+ .|+.++|.+++..+....-.+++.+|..
T Consensus 143 iv~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL 222 (374)
T PF13281_consen 143 IVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGL 222 (374)
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHH
Confidence 33445556777778888888888887651 11111211223334445 7788888888877555555667777777
Q ss_pred HHHHH
Q 036198 348 FLKVL 352 (499)
Q Consensus 348 li~~~ 352 (499)
+...|
T Consensus 223 ~GRIy 227 (374)
T PF13281_consen 223 LGRIY 227 (374)
T ss_pred HHHHH
Confidence 76665
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=96.68 E-value=0.097 Score=40.63 Aligned_cols=87 Identities=22% Similarity=0.188 Sum_probs=42.5
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCcC--hhhHHHHHHHHHhcCCchHHHHHHHHHhHCCCCCC---H-HHHHHHHHHHHh
Q 036198 351 VLCDNKNGDEALRLYGRMIEVGCWPS--VQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQD---V-DTYCVMIDGLFD 424 (499)
Q Consensus 351 ~~~~~g~~~~a~~~~~~m~~~~~~~~--~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~---~-~~~~~li~~~~~ 424 (499)
++-..|+.++|..+|++....|.... ...+-.+..++...|++++|..+++..... .|+ . .....+..++..
T Consensus 10 a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~--~p~~~~~~~l~~f~Al~L~~ 87 (120)
T PF12688_consen 10 AHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEE--FPDDELNAALRVFLALALYN 87 (120)
T ss_pred HHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCccccHHHHHHHHHHHHH
Confidence 34445666666666666555554322 224444555555566666666666655443 122 1 111122234445
Q ss_pred CCCHHHHHHHHHHHH
Q 036198 425 CSKVEEACFLLEEVV 439 (499)
Q Consensus 425 ~g~~~~a~~~~~~m~ 439 (499)
.|+.++|.+.+-...
T Consensus 88 ~gr~~eAl~~~l~~l 102 (120)
T PF12688_consen 88 LGRPKEALEWLLEAL 102 (120)
T ss_pred CCCHHHHHHHHHHHH
Confidence 566666665554443
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=96.68 E-value=0.15 Score=39.51 Aligned_cols=20 Identities=20% Similarity=0.097 Sum_probs=8.3
Q ss_pred HhcCCHhHHHHHHHHHHHcC
Q 036198 245 CKARMVTEAADLFEFMRTKG 264 (499)
Q Consensus 245 ~~~g~~~~a~~~~~~m~~~~ 264 (499)
-..|+.++|+.+|++....|
T Consensus 12 d~~G~~~~Ai~~Y~~Al~~g 31 (120)
T PF12688_consen 12 DSLGREEEAIPLYRRALAAG 31 (120)
T ss_pred HhcCCHHHHHHHHHHHHHcC
Confidence 33344444444444444433
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=96.66 E-value=0.012 Score=40.08 Aligned_cols=58 Identities=14% Similarity=0.177 Sum_probs=40.0
Q ss_pred HHHHHHhcCCHhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 036198 240 AIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINS 301 (499)
Q Consensus 240 li~~~~~~g~~~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~ 301 (499)
+...+.+.|++++|.+.|++..+.. +-+...+..+..++...|++++|...|+++.+.
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~----P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQD----PDNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCS----TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3456667777777777777777764 335667777777777777777777777777654
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.23 Score=43.40 Aligned_cols=130 Identities=11% Similarity=-0.030 Sum_probs=78.2
Q ss_pred HHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHH--
Q 036198 238 NTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLE-- 315 (499)
Q Consensus 238 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~-- 315 (499)
+.++.++.-.|.+.-...++.+..+.. .+.+......+++.-.+.||.+.|...|++..+..-..|..+++.++.
T Consensus 181 y~~~~~llG~kEy~iS~d~~~~vi~~~---~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n 257 (366)
T KOG2796|consen 181 YSMANCLLGMKEYVLSVDAYHSVIKYY---PEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMN 257 (366)
T ss_pred HHHHHHHhcchhhhhhHHHHHHHHHhC---CcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhh
Confidence 455555555666777777777777765 345566667777777777777777777777665544455555544432
Q ss_pred ---HHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 036198 316 ---GMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEV 371 (499)
Q Consensus 316 ---~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 371 (499)
.|.-.+++..|...+.+....+.. |+...|.-.-+..-.|+..+|.+.++.|.+.
T Consensus 258 ~a~i~lg~nn~a~a~r~~~~i~~~D~~-~~~a~NnKALcllYlg~l~DAiK~~e~~~~~ 315 (366)
T KOG2796|consen 258 SAFLHLGQNNFAEAHRFFTEILRMDPR-NAVANNNKALCLLYLGKLKDALKQLEAMVQQ 315 (366)
T ss_pred hhhheecccchHHHHHHHhhccccCCC-chhhhchHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 233445666666666666555322 4444444333334456777777777777664
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.58 E-value=0.22 Score=44.58 Aligned_cols=112 Identities=13% Similarity=0.164 Sum_probs=56.8
Q ss_pred ChhhHHHHHHHHHhcCCchHHHHHHHHHhHCCCCCCHHHHHHHHHHHHhC---CCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 036198 376 SVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDC---SKVEEACFLLEEVVNKGLKLPYRKFDS 452 (499)
Q Consensus 376 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~---g~~~~a~~~~~~m~~~~~~p~~~~~~~ 452 (499)
|...|-.|-.+|...|+.+.|..-|....+. -.+|...+..+..++... ..-.++..+|++++.... -+..+..-
T Consensus 155 d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL-~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~-~~iral~l 232 (287)
T COG4235 155 DAEGWDLLGRAYMALGRASDALLAYRNALRL-AGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDP-ANIRALSL 232 (287)
T ss_pred CchhHHHHHHHHHHhcchhHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCC-ccHHHHHH
Confidence 4455555555555555555555555555443 122344444444443321 123455555655555542 24444445
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhhcChhHHHHHHHHH
Q 036198 453 YLMQLSVIGDLGAIHKLSDHMRKFYNPVIARRLALNQ 489 (499)
Q Consensus 453 ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~ 489 (499)
|...+...|++.+|...|+.|.+..++..+.+-.+..
T Consensus 233 LA~~afe~g~~~~A~~~Wq~lL~~lp~~~~rr~~ie~ 269 (287)
T COG4235 233 LAFAAFEQGDYAEAAAAWQMLLDLLPADDPRRSLIER 269 (287)
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcCCCCCchHHHHHH
Confidence 5555556666666666666666655555554444433
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=96.58 E-value=0.016 Score=40.05 Aligned_cols=64 Identities=14% Similarity=0.135 Sum_probs=42.2
Q ss_pred CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHH
Q 036198 233 DNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQND-RMEECFSLLGHMIN 300 (499)
Q Consensus 233 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~-~~~~a~~~~~~m~~ 300 (499)
++.+|..+...+...|++++|+..|++..+.. +-+...|..+..++...| ++++|.+.++...+
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~----p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELD----PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS----TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC----CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 34566666677777777777777777776654 335566666666677776 57777777666654
|
... |
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=96.54 E-value=0.043 Score=43.05 Aligned_cols=79 Identities=9% Similarity=0.047 Sum_probs=37.1
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHhC---------------CCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHH-
Q 036198 307 VSTYKEVLEGMCLAGKVEEAYKFLEEMGNK---------------GYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIE- 370 (499)
Q Consensus 307 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~---------------~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~- 370 (499)
..++..+|.++++.|+.+....+++..-.- ...|+..+..+++.+|+..|++..|.++.+...+
T Consensus 2 e~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~ 81 (126)
T PF12921_consen 2 EELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRK 81 (126)
T ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 445556666666666666666555543211 2234444444444444444444444444444332
Q ss_pred CCCCcChhhHHHHHH
Q 036198 371 VGCWPSVQTYNMLIS 385 (499)
Q Consensus 371 ~~~~~~~~~~~~li~ 385 (499)
.+++.+..+|..|++
T Consensus 82 Y~I~i~~~~W~~Ll~ 96 (126)
T PF12921_consen 82 YPIPIPKEFWRRLLE 96 (126)
T ss_pred cCCCCCHHHHHHHHH
Confidence 233333444444444
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.52 E-value=0.027 Score=50.08 Aligned_cols=100 Identities=17% Similarity=0.138 Sum_probs=68.0
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHH
Q 036198 282 LVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEA 361 (499)
Q Consensus 282 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a 361 (499)
..+.+++++|++.|.+.++.. +-|.+-|..-..+|++.|.++.|.+-.+..+..+.. -..+|..|-.+|...|++++|
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~-yskay~RLG~A~~~~gk~~~A 168 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPH-YSKAYGRLGLAYLALGKYEEA 168 (304)
T ss_pred HHHhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChH-HHHHHHHHHHHHHccCcHHHH
Confidence 456777788888887777763 345555666677778888887777777766665322 356777777888888888888
Q ss_pred HHHHHHHHHCCCCcChhhHHHHHH
Q 036198 362 LRLYGRMIEVGCWPSVQTYNMLIS 385 (499)
Q Consensus 362 ~~~~~~m~~~~~~~~~~~~~~li~ 385 (499)
.+.|+...+ +.|+-.+|-.=+.
T Consensus 169 ~~aykKaLe--ldP~Ne~~K~nL~ 190 (304)
T KOG0553|consen 169 IEAYKKALE--LDPDNESYKSNLK 190 (304)
T ss_pred HHHHHhhhc--cCCCcHHHHHHHH
Confidence 888777776 4466666543333
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=96.52 E-value=0.038 Score=43.34 Aligned_cols=54 Identities=11% Similarity=0.040 Sum_probs=42.8
Q ss_pred CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhc
Q 036198 407 GCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNK-GLKLPYRKFDSYLMQLSVI 460 (499)
Q Consensus 407 ~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-~~~p~~~~~~~ll~~~~~~ 460 (499)
...|+..+..+++.+|+..|++..|+++++...+. +++.+..+|..|++=+...
T Consensus 47 pl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~v~ 101 (126)
T PF12921_consen 47 PLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAYVL 101 (126)
T ss_pred CCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHh
Confidence 46688888899999998889999999998887654 7777888888888655433
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.43 E-value=0.43 Score=47.14 Aligned_cols=89 Identities=13% Similarity=0.123 Sum_probs=64.1
Q ss_pred ChhhHHHHHHHHHhcCCchHHHHHHHHHhHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCH--------
Q 036198 376 SVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPY-------- 447 (499)
Q Consensus 376 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~-------- 447 (499)
+..+...+..-+.+...+.-|-++|..|-+. ..++......+++.+|..+.+..-+. .||.
T Consensus 746 ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~---------ksiVqlHve~~~W~eAFalAe~hPe~--~~dVy~pyaqwL 814 (1081)
T KOG1538|consen 746 EREPLLLCATYLKKLDSPGLAAEIFLKMGDL---------KSLVQLHVETQRWDEAFALAEKHPEF--KDDVYMPYAQWL 814 (1081)
T ss_pred hhhHHHHHHHHHhhccccchHHHHHHHhccH---------HHHhhheeecccchHhHhhhhhCccc--cccccchHHHHh
Confidence 3445555555556677888899999998653 56777788899999999998765443 2222
Q ss_pred ---HHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 036198 448 ---RKFDSYLMQLSVIGDLGAIHKLSDHMRK 475 (499)
Q Consensus 448 ---~~~~~ll~~~~~~g~~~~a~~~~~~m~~ 475 (499)
.-|...-.||.+.|+-.+|.++++++..
T Consensus 815 AE~DrFeEAqkAfhkAGr~~EA~~vLeQLtn 845 (1081)
T KOG1538|consen 815 AENDRFEEAQKAFHKAGRQREAVQVLEQLTN 845 (1081)
T ss_pred hhhhhHHHHHHHHHHhcchHHHHHHHHHhhh
Confidence 1334455789999999999999998764
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.40 E-value=0.29 Score=48.69 Aligned_cols=190 Identities=17% Similarity=0.135 Sum_probs=90.6
Q ss_pred CCCHHHHHHHHHHHHhCCChHHHHHHHHHhhc--CCCCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHh
Q 036198 174 QPEINALNLLLDALCKCGLVDYAETICKRVKN--KVKPNANTYNILGMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVT 251 (499)
Q Consensus 174 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~~~p~~~~~~~la~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~ 251 (499)
.|....|..+.......-.++-|+..|-+... ++ ++..++.. -.+...-.+=+.+| -|+++
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gi------------k~vkrl~~---i~s~~~q~aei~~~--~g~fe 751 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGI------------KLVKRLRT---IHSKEQQRAEISAF--YGEFE 751 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccch------------hHHHHhhh---hhhHHHHhHhHhhh--hcchh
Confidence 46666777777766666667777766655543 10 01111100 00111111122222 47788
Q ss_pred HHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC--CcCHHhHHHHHHHHHhcCCHHHHHHH
Q 036198 252 EAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGC--LPDVSTYKEVLEGMCLAGKVEEAYKF 329 (499)
Q Consensus 252 ~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~--~~~~~~~~~ll~~~~~~g~~~~a~~~ 329 (499)
+|++++-+|..++ ..|..+.+.|+|-.+.++++.=- .+. .--...++.+.+.++....|++|.+.
T Consensus 752 eaek~yld~drrD------------LAielr~klgDwfrV~qL~r~g~-~d~dD~~~e~A~r~ig~~fa~~~~We~A~~y 818 (1189)
T KOG2041|consen 752 EAEKLYLDADRRD------------LAIELRKKLGDWFRVYQLIRNGG-SDDDDEGKEDAFRNIGETFAEMMEWEEAAKY 818 (1189)
T ss_pred Hhhhhhhccchhh------------hhHHHHHhhhhHHHHHHHHHccC-CCcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888887776554 23455566666666665553211 000 00123455555555555555555544
Q ss_pred HHHHHh---------------------CCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcChhhHHHHHHHHH
Q 036198 330 LEEMGN---------------------KGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYF 388 (499)
Q Consensus 330 ~~~m~~---------------------~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~ 388 (499)
+..-.. ...+-+....-.+..++.+.|.-++|.+.|-+-.. | ...+.+|.
T Consensus 819 Y~~~~~~e~~~ecly~le~f~~LE~la~~Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr~s~----p-----kaAv~tCv 889 (1189)
T KOG2041|consen 819 YSYCGDTENQIECLYRLELFGELEVLARTLPEDSELLPVMADMFTSVGMCDQAVEAYLRRSL----P-----KAAVHTCV 889 (1189)
T ss_pred HHhccchHhHHHHHHHHHhhhhHHHHHHhcCcccchHHHHHHHHHhhchHHHHHHHHHhccC----c-----HHHHHHHH
Confidence 433211 11222344444555555555655555554432211 1 22344555
Q ss_pred hcCCchHHHHHHHH
Q 036198 389 ELGEPDGAFETWHE 402 (499)
Q Consensus 389 ~~~~~~~a~~~~~~ 402 (499)
..+++.+|.++-+.
T Consensus 890 ~LnQW~~avelaq~ 903 (1189)
T KOG2041|consen 890 ELNQWGEAVELAQR 903 (1189)
T ss_pred HHHHHHHHHHHHHh
Confidence 56666666665554
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=96.31 E-value=0.5 Score=39.12 Aligned_cols=101 Identities=11% Similarity=0.031 Sum_probs=45.0
Q ss_pred cCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC-cChhhHHHH
Q 036198 305 PDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCW-PSVQTYNML 383 (499)
Q Consensus 305 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~-~~~~~~~~l 383 (499)
|+...-..|..++...|+..+|...|++...--+.-|......+.++....+++..|...++.+.+.... -+..+.-.+
T Consensus 87 pTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~ 166 (251)
T COG4700 87 PTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLF 166 (251)
T ss_pred hhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHH
Confidence 3333333444455555555555555555444333334444444444444455555555555554443200 011222333
Q ss_pred HHHHHhcCCchHHHHHHHHHhH
Q 036198 384 ISMYFELGEPDGAFETWHEMDK 405 (499)
Q Consensus 384 i~~~~~~~~~~~a~~~~~~m~~ 405 (499)
.+.+...|....|+.-|+...+
T Consensus 167 aR~laa~g~~a~Aesafe~a~~ 188 (251)
T COG4700 167 ARTLAAQGKYADAESAFEVAIS 188 (251)
T ss_pred HHHHHhcCCchhHHHHHHHHHH
Confidence 4444445555555555554444
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.30 E-value=0.13 Score=47.76 Aligned_cols=270 Identities=13% Similarity=0.020 Sum_probs=150.0
Q ss_pred hhhhHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHhhcCCCCC
Q 036198 131 KAKQFRLVCSMLDYMKRNNKVFVPVDVLLMILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPN 210 (499)
Q Consensus 131 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~ 210 (499)
+.|+.+....+|+...+.| ..+..++. .+|.-|.++|.-.+++++|++....=.-
T Consensus 29 k~gdcraGv~ff~aA~qvG--TeDl~tLS------------------AIYsQLGNAyfyL~DY~kAl~yH~hDlt----- 83 (639)
T KOG1130|consen 29 KMGDCRAGVDFFKAALQVG--TEDLSTLS------------------AIYSQLGNAYFYLKDYEKALKYHTHDLT----- 83 (639)
T ss_pred hccchhhhHHHHHHHHHhc--chHHHHHH------------------HHHHHhcchhhhHhhHHHHHhhhhhhHH-----
Confidence 8899999999999998887 23322222 3678888888888999999886432100
Q ss_pred hhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHH----HHcCCCCCCCCHHHHHHHHHHHHHcC
Q 036198 211 ANTYNILGMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFM----RTKGSTISSPTAKTYAIMIVALVQND 286 (499)
Q Consensus 211 ~~~~~~la~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m----~~~~~~~~~p~~~~~~~ll~~~~~~~ 286 (499)
+.+...... -...+...|...+--.|.+++|+-...+- .+.|.. .....++-.+...|...|
T Consensus 84 -----------lar~lgdkl-GEAKssgNLGNtlKv~G~fdeA~~cc~rhLd~areLgDr--v~e~RAlYNlgnvYhakG 149 (639)
T KOG1130|consen 84 -----------LARLLGDKL-GEAKSSGNLGNTLKVKGAFDEALTCCFRHLDFARELGDR--VLESRALYNLGNVYHAKG 149 (639)
T ss_pred -----------HHHHhcchh-ccccccccccchhhhhcccchHHHHHHHHhHHHHHHhHH--HhhhHHHhhhhhhhhhcc
Confidence 000000000 01111122333333344444444322111 111110 011223333444444333
Q ss_pred C--------------------HHHHHHHHHHHHH----cCC-CcCHHhHHHHHHHHHhcCCHHHHHHHHHHHH----hCC
Q 036198 287 R--------------------MEECFSLLGHMIN----SGC-LPDVSTYKEVLEGMCLAGKVEEAYKFLEEMG----NKG 337 (499)
Q Consensus 287 ~--------------------~~~a~~~~~~m~~----~~~-~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~----~~~ 337 (499)
+ ++.|.+.|.+=.+ .|- ......|..|-+.|.-.|+++.|....+.-. +.|
T Consensus 150 k~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efG 229 (639)
T KOG1130|consen 150 KCTGLEAPEEKGAFNAEVTSALENAVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFG 229 (639)
T ss_pred cccCCCChhhcccccHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhh
Confidence 2 3344444433221 110 1123456666666777889999887765422 222
Q ss_pred CC-CCHhhHHHHHHHHHHcCCHHHHHHHHHHHH----HCCC-CcChhhHHHHHHHHHhcCCchHHHHHHHHHhH----C-
Q 036198 338 YP-PDIVTYNCFLKVLCDNKNGDEALRLYGRMI----EVGC-WPSVQTYNMLISMYFELGEPDGAFETWHEMDK----R- 406 (499)
Q Consensus 338 ~~-p~~~~~~~li~~~~~~g~~~~a~~~~~~m~----~~~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~----~- 406 (499)
-+ .....+..+.+++.-.|+++.|.+.|+.-. +.|- .......-+|..+|.-..++++|+.++.+-.. .
T Consensus 230 DrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~ 309 (639)
T KOG1130|consen 230 DRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELE 309 (639)
T ss_pred hHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11 234567888888888999999998887643 2231 12345566777888877888888887765321 1
Q ss_pred CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 036198 407 GCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVV 439 (499)
Q Consensus 407 ~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 439 (499)
...-....+..|-.+|...|..++|+.+....+
T Consensus 310 DriGe~RacwSLgna~~alg~h~kAl~fae~hl 342 (639)
T KOG1130|consen 310 DRIGELRACWSLGNAFNALGEHRKALYFAELHL 342 (639)
T ss_pred HhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 112245577788888888888888887776554
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=96.28 E-value=0.099 Score=47.09 Aligned_cols=102 Identities=11% Similarity=-0.028 Sum_probs=52.7
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHhhcCCCCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHH
Q 036198 179 ALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFE 258 (499)
Q Consensus 179 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~~~~~la~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~ 258 (499)
.|...+..+.+.|++++|...|+.+....|-+ .. ....+-.+..+|...|++++|...|+
T Consensus 145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s------------------~~--a~~A~y~LG~~y~~~g~~~~A~~~f~ 204 (263)
T PRK10803 145 DYNAAIALVQDKSRQDDAIVAFQNFVKKYPDS------------------TY--QPNANYWLGQLNYNKGKKDDAAYYFA 204 (263)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCC------------------cc--hHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 45555555555566666666666655421100 00 01234455666666666666666666
Q ss_pred HHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 036198 259 FMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINS 301 (499)
Q Consensus 259 ~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~ 301 (499)
.+.+.... .+.....+-.+...+...|+.++|..+|+.+.+.
T Consensus 205 ~vv~~yP~-s~~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 205 SVVKNYPK-SPKAADAMFKVGVIMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHHCCC-CcchhHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 66654321 1122334444445555666666666666666554
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.28 E-value=0.38 Score=43.14 Aligned_cols=98 Identities=9% Similarity=0.082 Sum_probs=38.8
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCCCCHhhHHH
Q 036198 271 TAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAG---KVEEAYKFLEEMGNKGYPPDIVTYNC 347 (499)
Q Consensus 271 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g---~~~~a~~~~~~m~~~~~~p~~~~~~~ 347 (499)
|...|-.|...|...|+.+.|..-|....+.. .++...+..+..++.... .-.++..+|+++...... ++.+...
T Consensus 155 d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~-~iral~l 232 (287)
T COG4235 155 DAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPA-NIRALSL 232 (287)
T ss_pred CchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCc-cHHHHHH
Confidence 34444444444444444444444444444331 223333333333322211 123344444444443221 3333333
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHH
Q 036198 348 FLKVLCDNKNGDEALRLYGRMIE 370 (499)
Q Consensus 348 li~~~~~~g~~~~a~~~~~~m~~ 370 (499)
|...+...|++.+|...|+.|.+
T Consensus 233 LA~~afe~g~~~~A~~~Wq~lL~ 255 (287)
T COG4235 233 LAFAAFEQGDYAEAAAAWQMLLD 255 (287)
T ss_pred HHHHHHHcccHHHHHHHHHHHHh
Confidence 33444444444444444444444
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.23 E-value=0.066 Score=47.70 Aligned_cols=101 Identities=21% Similarity=0.169 Sum_probs=78.4
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCcChhhHHHHHHHHHhcCCchHHHHHHHHHhHCCCCC-CHHHHHHHHHHHHhCCCH
Q 036198 350 KVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQ-DVDTYCVMIDGLFDCSKV 428 (499)
Q Consensus 350 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~ 428 (499)
+-..+.+++.+|+..|.+.++.. +-|.+-|..=..+|.+.|.++.|++=.+..... .| -..+|..|-.+|...|++
T Consensus 89 N~~m~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~i--Dp~yskay~RLG~A~~~~gk~ 165 (304)
T KOG0553|consen 89 NKLMKNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSI--DPHYSKAYGRLGLAYLALGKY 165 (304)
T ss_pred HHHHHhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhc--ChHHHHHHHHHHHHHHccCcH
Confidence 34667889999999999998854 245677788888999999999998888777664 33 345888899999999999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 036198 429 EEACFLLEEVVNKGLKLPYRKFDSYLM 455 (499)
Q Consensus 429 ~~a~~~~~~m~~~~~~p~~~~~~~ll~ 455 (499)
++|.+.|++.++. .|+-.+|..=+.
T Consensus 166 ~~A~~aykKaLel--dP~Ne~~K~nL~ 190 (304)
T KOG0553|consen 166 EEAIEAYKKALEL--DPDNESYKSNLK 190 (304)
T ss_pred HHHHHHHHhhhcc--CCCcHHHHHHHH
Confidence 9999999887765 477666655443
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.21 E-value=1.1 Score=41.82 Aligned_cols=321 Identities=13% Similarity=0.065 Sum_probs=169.9
Q ss_pred HHHHccCCChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHHHcCCCcccHHHHHHHHHHH
Q 036198 86 GVLQRFQFEEKIAFRFFMWAGHQDNYAHEPLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLMILKQY 165 (499)
Q Consensus 86 ~~l~~~~~~~~~a~~~f~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~l~~~ 165 (499)
-++..+-.+|..+.+.|+.-.++.| |..|-.++.-. -.|+-..|.++-.+-.+.
T Consensus 60 wlv~~iw~sP~t~~Ryfr~rKRdrg-------yqALStGliAa--gAGda~lARkmt~~~~~l----------------- 113 (531)
T COG3898 60 WLVRSIWESPYTARRYFRERKRDRG-------YQALSTGLIAA--GAGDASLARKMTARASKL----------------- 113 (531)
T ss_pred HHHHHHHhCcHHHHHHHHHHHhhhH-------HHHHhhhhhhh--ccCchHHHHHHHHHHHhh-----------------
Confidence 3445566778888899988776666 66666555422 356777777766553321
Q ss_pred HHhhhcCCCCCHHHHHHHHHHH--HhCCChHHHHHHHHHhhcCCCCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 036198 166 TEKIKVKTQPEINALNLLLDAL--CKCGLVDYAETICKRVKNKVKPNANTYNILGMQTLEEMIQMGHAPDNFTYNTAIDT 243 (499)
Q Consensus 166 ~~~~~~~~~~~~~~~~~li~~~--~~~g~~~~A~~~~~~m~~~~~p~~~~~~~la~~~~~~m~~~g~~p~~~~~~~li~~ 243 (499)
+.-|..-.-.|+.+- .-.|+++.|.+-|+.|... -+|...| ...|.-.
T Consensus 114 -------lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d----------------PEtRllG-------LRgLyle 163 (531)
T COG3898 114 -------LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD----------------PETRLLG-------LRGLYLE 163 (531)
T ss_pred -------hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC----------------hHHHHHh-------HHHHHHH
Confidence 122333333333332 3469999999999999862 1111111 1233333
Q ss_pred HHhcCCHhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcCHHh--HHHHHHHHHh-
Q 036198 244 FCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSG-CLPDVST--YKEVLEGMCL- 319 (499)
Q Consensus 244 ~~~~g~~~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~-~~~~~~~--~~~ll~~~~~- 319 (499)
.-+.|..+.|...-+..-..- +--...+...+...+..|+|+.|+++.+.-.... +.++..- -..|+.+-..
T Consensus 164 Aqr~GareaAr~yAe~Aa~~A----p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s 239 (531)
T COG3898 164 AQRLGAREAARHYAERAAEKA----PQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMS 239 (531)
T ss_pred HHhcccHHHHHHHHHHHHhhc----cCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHH
Confidence 445677777777777666553 2234667777777778888888888777665432 2222211 1122222111
Q ss_pred --cCCHHHHHHHHHHHHhCCCCCCHhhH-HHHHHHHHHcCCHHHHHHHHHHHHHCCCCcChhhHHHHHHHHHhcCCchHH
Q 036198 320 --AGKVEEAYKFLEEMGNKGYPPDIVTY-NCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGA 396 (499)
Q Consensus 320 --~g~~~~a~~~~~~m~~~~~~p~~~~~-~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a 396 (499)
..+...|...-.+..+ ..||...- .....++.+.|+..++-.+++.+-+....|+ .+. +..+.+.|+ .+
T Consensus 240 ~ldadp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~--ia~--lY~~ar~gd--ta 311 (531)
T COG3898 240 LLDADPASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPD--IAL--LYVRARSGD--TA 311 (531)
T ss_pred HhcCChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChH--HHH--HHHHhcCCC--cH
Confidence 1234444443333322 23443321 2233556677777777777777766543333 221 222233343 33
Q ss_pred HHHHHHHhHC-CCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-hcCCHHHHHHHHHHH
Q 036198 397 FETWHEMDKR-GCAQ-DVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLS-VIGDLGAIHKLSDHM 473 (499)
Q Consensus 397 ~~~~~~m~~~-~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~-~~g~~~~a~~~~~~m 473 (499)
.+-+++.... .++| +..+--.+..+-...|++..|..--+..... .|....|..|.+.-. ..||-.++...+.+.
T Consensus 312 ~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~--~pres~~lLlAdIeeAetGDqg~vR~wlAqa 389 (531)
T COG3898 312 LDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAARE--APRESAYLLLADIEEAETGDQGKVRQWLAQA 389 (531)
T ss_pred HHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhh--CchhhHHHHHHHHHhhccCchHHHHHHHHHH
Confidence 3333333221 1233 3344445556666667766665555444332 356666655555443 347777777766666
Q ss_pred Hhh
Q 036198 474 RKF 476 (499)
Q Consensus 474 ~~~ 476 (499)
.+.
T Consensus 390 v~A 392 (531)
T COG3898 390 VKA 392 (531)
T ss_pred hcC
Confidence 554
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.19 E-value=0.17 Score=44.26 Aligned_cols=133 Identities=8% Similarity=-0.064 Sum_probs=77.3
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcChhhHHHHHH---
Q 036198 309 TYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLIS--- 385 (499)
Q Consensus 309 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~--- 385 (499)
+.+.++..+.-.|.+.-...++.+..+...+-++...+.+...-.+.|+.+.|...|++..+..-+.|..+++.++.
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~ 258 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS 258 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence 33445555566666666667777776665555666666677777777777777777776665433344444443332
Q ss_pred --HHHhcCCchHHHHHHHHHhHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC
Q 036198 386 --MYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKG 442 (499)
Q Consensus 386 --~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 442 (499)
.|.-++++..|...+.++....-. |+...|.-.-+..-.|+...|.+.++.|+...
T Consensus 259 a~i~lg~nn~a~a~r~~~~i~~~D~~-~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~ 316 (366)
T KOG2796|consen 259 AFLHLGQNNFAEAHRFFTEILRMDPR-NAVANNNKALCLLYLGKLKDALKQLEAMVQQD 316 (366)
T ss_pred hhheecccchHHHHHHHhhccccCCC-chhhhchHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 344456666777777666554211 33333322222233567777777777777654
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.01 E-value=0.063 Score=37.46 Aligned_cols=56 Identities=13% Similarity=-0.015 Sum_probs=26.9
Q ss_pred HHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcC
Q 036198 422 LFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHMRKFYN 478 (499)
Q Consensus 422 ~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~ 478 (499)
|.+.+++++|.++++.+...+. .+...+.....++.+.|++++|.+.+++..+..+
T Consensus 5 ~~~~~~~~~A~~~~~~~l~~~p-~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p 60 (73)
T PF13371_consen 5 YLQQEDYEEALEVLERALELDP-DDPELWLQRARCLFQLGRYEEALEDLERALELSP 60 (73)
T ss_pred HHhCCCHHHHHHHHHHHHHhCc-ccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCC
Confidence 4444555555555555544432 1344444444445555555555555555554443
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.95 E-value=1.9 Score=43.73 Aligned_cols=114 Identities=10% Similarity=0.041 Sum_probs=85.6
Q ss_pred CCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcChhhHHHHHHHHHhcCCchHHHHHHHHHhHCCCCCCHHHHHHHH
Q 036198 340 PDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMI 419 (499)
Q Consensus 340 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li 419 (499)
..-.+.+--+.-+...|+..+|.++-.+.. .||...|-.=+.+++..+++++-+++-+.++ .+.-|..++
T Consensus 682 f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAkskk------sPIGy~PFV 751 (829)
T KOG2280|consen 682 FVDLSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSKK------SPIGYLPFV 751 (829)
T ss_pred cccCcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhccC------CCCCchhHH
Confidence 344455556666777889899988877764 3888889888999999999988877766653 245688889
Q ss_pred HHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 036198 420 DGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDH 472 (499)
Q Consensus 420 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~ 472 (499)
.+|.+.|+.++|.+++.+.- +.. -...+|.+.|++.+|.+..-+
T Consensus 752 e~c~~~~n~~EA~KYiprv~------~l~---ekv~ay~~~~~~~eAad~A~~ 795 (829)
T KOG2280|consen 752 EACLKQGNKDEAKKYIPRVG------GLQ---EKVKAYLRVGDVKEAADLAAE 795 (829)
T ss_pred HHHHhcccHHHHhhhhhccC------ChH---HHHHHHHHhccHHHHHHHHHH
Confidence 99999999999999886542 111 567788888998888776544
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=95.88 E-value=1.6 Score=41.17 Aligned_cols=85 Identities=12% Similarity=-0.013 Sum_probs=53.6
Q ss_pred HHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHcCCCcCHHhH
Q 036198 234 NFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQ---NDRMEECFSLLGHMINSGCLPDVSTY 310 (499)
Q Consensus 234 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~---~~~~~~a~~~~~~m~~~~~~~~~~~~ 310 (499)
..+...++-+|....+++...++++.+.........-+...-....-++.+ .|+.++|.+++..+......++..+|
T Consensus 141 ~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~ 220 (374)
T PF13281_consen 141 PDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTL 220 (374)
T ss_pred hhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHH
Confidence 334445566788888888888888888765210011122222233334555 78888888888886655567778788
Q ss_pred HHHHHHHH
Q 036198 311 KEVLEGMC 318 (499)
Q Consensus 311 ~~ll~~~~ 318 (499)
..+.+.|-
T Consensus 221 gL~GRIyK 228 (374)
T PF13281_consen 221 GLLGRIYK 228 (374)
T ss_pred HHHHHHHH
Confidence 77776654
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.83 E-value=0.13 Score=47.72 Aligned_cols=132 Identities=12% Similarity=0.021 Sum_probs=88.5
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHH----HCCCC-cChhhHHHHHHHHHhcCCchHHHHHHHHHh----HCCC-CCCHH
Q 036198 344 TYNCFLKVLCDNKNGDEALRLYGRMI----EVGCW-PSVQTYNMLISMYFELGEPDGAFETWHEMD----KRGC-AQDVD 413 (499)
Q Consensus 344 ~~~~li~~~~~~g~~~~a~~~~~~m~----~~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~m~----~~~~-~p~~~ 413 (499)
.|..|.+.|.-.|+++.|....+.-. +.|-+ .-...+..|..++.-.|+++.|.+.|+.-. +.|- .....
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ 276 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ 276 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence 45555566666778888877665422 22322 223567888888889999999999888643 2221 12333
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHH----C-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 036198 414 TYCVMIDGLFDCSKVEEACFLLEEVVN----K-GLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHMRK 475 (499)
Q Consensus 414 ~~~~li~~~~~~g~~~~a~~~~~~m~~----~-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~ 475 (499)
+.-.|-..|.-..++++|+.++.+-+. . ...-....+.+|..++...|..++|..+.+.-.+
T Consensus 277 scYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 277 SCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 445667777777788888888765432 1 1223567888999999999999999988777654
|
|
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=95.80 E-value=0.66 Score=36.05 Aligned_cols=65 Identities=9% Similarity=-0.006 Sum_probs=35.0
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCh
Q 036198 414 TYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHMRKFYNP 479 (499)
Q Consensus 414 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~ 479 (499)
.+...+..+...|+-+...+++.++.+.+ .+++...-.+..||.+.|+..++.+++.+..+.+.+
T Consensus 88 ~vD~ALd~lv~~~kkDqLdki~~~l~kn~-~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 88 YVDLALDILVKQGKKDQLDKIYNELKKNE-EINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHhhcc-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 34455555666666666666666665432 456666666666666666666666666666655443
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=95.67 E-value=1 Score=37.36 Aligned_cols=156 Identities=12% Similarity=0.035 Sum_probs=110.1
Q ss_pred HHHHHHhcCCHhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHh
Q 036198 240 AIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCL 319 (499)
Q Consensus 240 li~~~~~~g~~~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~ 319 (499)
+..+....=+.+...+-..+-.+ ..|+...--.+..+....|+..+|...|.+...--+.-|....-.+.++...
T Consensus 62 ~~~a~~q~ldP~R~~Rea~~~~~-----~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa 136 (251)
T COG4700 62 LLMALQQKLDPERHLREATEELA-----IAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFA 136 (251)
T ss_pred HHHHHHHhcChhHHHHHHHHHHh-----hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHh
Confidence 44444444455544433333222 4578888888899999999999999999998876566678888888899999
Q ss_pred cCCHHHHHHHHHHHHhCCCC-CCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcChhhHHHHHHHHHhcCCchHHHH
Q 036198 320 AGKVEEAYKFLEEMGNKGYP-PDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFE 398 (499)
Q Consensus 320 ~g~~~~a~~~~~~m~~~~~~-p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~ 398 (499)
.+++..|...++.+.+.+.. -++.+...+...+...|.+.+|+.-|+..... -|+...-...-..++++|+.+++..
T Consensus 137 ~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~--ypg~~ar~~Y~e~La~qgr~~ea~a 214 (251)
T COG4700 137 IQEFAAAQQTLEDLMEYNPAFRSPDGHLLFARTLAAQGKYADAESAFEVAISY--YPGPQARIYYAEMLAKQGRLREANA 214 (251)
T ss_pred hccHHHHHHHHHHHhhcCCccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcchhHHHH
Confidence 99999999999998776311 12334556778888999999999999998875 3555444444455677787666554
Q ss_pred HHHH
Q 036198 399 TWHE 402 (499)
Q Consensus 399 ~~~~ 402 (499)
-+..
T Consensus 215 q~~~ 218 (251)
T COG4700 215 QYVA 218 (251)
T ss_pred HHHH
Confidence 3333
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=95.67 E-value=0.1 Score=36.40 Aligned_cols=56 Identities=16% Similarity=0.145 Sum_probs=35.2
Q ss_pred HHHHhcCCHhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 036198 242 DTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINS 301 (499)
Q Consensus 242 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~ 301 (499)
..|.+.+++++|.++++.+...+ +.+...|.....++...|++++|...|+...+.
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~----p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~ 58 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELD----PDDPELWLQRARCLFQLGRYEEALEDLERALEL 58 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhC----cccchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 34566666666666666666654 335555666666666666666666666666654
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=95.64 E-value=0.031 Score=39.76 Aligned_cols=64 Identities=11% Similarity=0.081 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHC----CCC-CC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 036198 413 DTYCVMIDGLFDCSKVEEACFLLEEVVNK----GLK-LP-YRKFDSYLMQLSVIGDLGAIHKLSDHMRKF 476 (499)
Q Consensus 413 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~-p~-~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~ 476 (499)
.+|+.+...|...|++++|+..+++..+. |-. |+ ..++..+..+|...|++++|.+++++..+.
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 35666666677777777777777666532 211 21 446666677777777777777777766553
|
... |
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=95.62 E-value=0.46 Score=46.39 Aligned_cols=134 Identities=13% Similarity=0.100 Sum_probs=75.6
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcChhhHHHHHHH
Q 036198 307 VSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISM 386 (499)
Q Consensus 307 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~ 386 (499)
....+.++.-+-+.|.++.|+++..+-. .-.....+.|+++.|.++.++. .+...|..|...
T Consensus 295 ~~~~~~i~~fL~~~G~~e~AL~~~~D~~------------~rFeLAl~lg~L~~A~~~a~~~------~~~~~W~~Lg~~ 356 (443)
T PF04053_consen 295 KDQGQSIARFLEKKGYPELALQFVTDPD------------HRFELALQLGNLDIALEIAKEL------DDPEKWKQLGDE 356 (443)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHSS-HH------------HHHHHHHHCT-HHHHHHHCCCC------STHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHCCCHHHHHhhcCChH------------HHhHHHHhcCCHHHHHHHHHhc------CcHHHHHHHHHH
Confidence 3345666666666666666666543321 1233344566666666554332 355577777777
Q ss_pred HHhcCCchHHHHHHHHHhHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 036198 387 YFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAI 466 (499)
Q Consensus 387 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a 466 (499)
..+.|+++-|++.|.+..+ |..|.-.|.-.|+.+...++.+.....| -++..+.++.-.|+.++.
T Consensus 357 AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~~------~~n~af~~~~~lgd~~~c 421 (443)
T PF04053_consen 357 ALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEERG------DINIAFQAALLLGDVEEC 421 (443)
T ss_dssp HHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-------HHHHHHHHHHHT-HHHH
T ss_pred HHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHcc------CHHHHHHHHHHcCCHHHH
Confidence 7777777777777766543 4555555666677666666666666555 244455555566666666
Q ss_pred HHHHHHH
Q 036198 467 HKLSDHM 473 (499)
Q Consensus 467 ~~~~~~m 473 (499)
.+++.+-
T Consensus 422 v~lL~~~ 428 (443)
T PF04053_consen 422 VDLLIET 428 (443)
T ss_dssp HHHHHHT
T ss_pred HHHHHHc
Confidence 6665554
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.58 E-value=1.2 Score=41.76 Aligned_cols=155 Identities=13% Similarity=0.073 Sum_probs=100.5
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHH--HHHcCCHHHHHHHHHHHHHCCCCcChhhHHHH---------
Q 036198 315 EGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKV--LCDNKNGDEALRLYGRMIEVGCWPSVQTYNML--------- 383 (499)
Q Consensus 315 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~--~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l--------- 383 (499)
.++.-.|+.++|.+.-....+.. ....+...+.+ +...++.+.|...|++....+ |+...-..+
T Consensus 177 ~cl~~~~~~~~a~~ea~~ilkld---~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ld--pdh~~sk~~~~~~k~le~ 251 (486)
T KOG0550|consen 177 ECLAFLGDYDEAQSEAIDILKLD---ATNAEALYVRGLCLYYNDNADKAINHFQQALRLD--PDHQKSKSASMMPKKLEV 251 (486)
T ss_pred hhhhhcccchhHHHHHHHHHhcc---cchhHHHHhcccccccccchHHHHHHHhhhhccC--hhhhhHHhHhhhHHHHHH
Confidence 35567788888888777766653 22233444433 334677788888888877654 443322111
Q ss_pred ----HHHHHhcCCchHHHHHHHHHhHC---CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHH---H
Q 036198 384 ----ISMYFELGEPDGAFETWHEMDKR---GCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDS---Y 453 (499)
Q Consensus 384 ----i~~~~~~~~~~~a~~~~~~m~~~---~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~---l 453 (499)
-.-..+.|++..|.+.+.+.+.. ...|+...|.-...+..+.|+.++|+.-.++..+. |..-... -
T Consensus 252 ~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~i----D~syikall~r 327 (486)
T KOG0550|consen 252 KKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKI----DSSYIKALLRR 327 (486)
T ss_pred HHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhc----CHHHHHHHHHH
Confidence 12235678888899999887654 45667777777777788889999998888877654 3333222 2
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhhcC
Q 036198 454 LMQLSVIGDLGAIHKLSDHMRKFYN 478 (499)
Q Consensus 454 l~~~~~~g~~~~a~~~~~~m~~~~~ 478 (499)
.+++...++|++|.+-+++..+.-.
T Consensus 328 a~c~l~le~~e~AV~d~~~a~q~~~ 352 (486)
T KOG0550|consen 328 ANCHLALEKWEEAVEDYEKAMQLEK 352 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 3556667888888888887766433
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=95.49 E-value=0.06 Score=38.21 Aligned_cols=64 Identities=17% Similarity=0.142 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCC---CCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 036198 235 FTYNTAIDTFCKARMVTEAADLFEFMRTKGSTIS---SPT-AKTYAIMIVALVQNDRMEECFSLLGHMI 299 (499)
Q Consensus 235 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~---~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~m~ 299 (499)
.+++.+...|...|++++|+..|++..+.. ... .|+ ..+++.+...+...|++++|++.+++..
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIE-EQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHH-HHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-HHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 456666677777777777777776665431 001 111 3455666666666666666666666544
|
... |
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=95.36 E-value=1.2 Score=35.89 Aligned_cols=84 Identities=11% Similarity=0.040 Sum_probs=39.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcChhhHHHHHHHHHhcC
Q 036198 312 EVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELG 391 (499)
Q Consensus 312 ~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~ 391 (499)
.++..+...+.......+++.+...+. .+...++.++..|++.+. +.....+.. ..+......+++.|.+.+
T Consensus 12 ~vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~~~~-~~ll~~l~~------~~~~yd~~~~~~~c~~~~ 83 (140)
T smart00299 12 EVVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAKYDP-QKEIERLDN------KSNHYDIEKVGKLCEKAK 83 (140)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHHHCH-HHHHHHHHh------ccccCCHHHHHHHHHHcC
Confidence 344444445555555555555555442 344455555555554322 222222221 122233344555555555
Q ss_pred CchHHHHHHHHH
Q 036198 392 EPDGAFETWHEM 403 (499)
Q Consensus 392 ~~~~a~~~~~~m 403 (499)
.++++..++..+
T Consensus 84 l~~~~~~l~~k~ 95 (140)
T smart00299 84 LYEEAVELYKKD 95 (140)
T ss_pred cHHHHHHHHHhh
Confidence 555555555554
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=95.29 E-value=0.75 Score=37.56 Aligned_cols=85 Identities=12% Similarity=-0.098 Sum_probs=42.0
Q ss_pred HcCCHHHHHHHHHHHHHCCCCcChhhHHHHHHHHHhcCCchHHHHHHHHHhHCCCCCCHHHHHHHHHHHHhCCCHHHHHH
Q 036198 354 DNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACF 433 (499)
Q Consensus 354 ~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~ 433 (499)
..|++++|..+|.-+...+. -+..-+..|..+|-..+++++|...|......+. -|+..+-..-.++...|+.+.|..
T Consensus 49 ~~Gk~~eA~~~F~~L~~~d~-~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~-~dp~p~f~agqC~l~l~~~~~A~~ 126 (165)
T PRK15331 49 NQGRLDEAETFFRFLCIYDF-YNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK-NDYRPVFFTGQCQLLMRKAAKARQ 126 (165)
T ss_pred HCCCHHHHHHHHHHHHHhCc-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-CCCCccchHHHHHHHhCCHHHHHH
Confidence 45666666666655554432 2333344455555555556666665554433221 122223334445555566666666
Q ss_pred HHHHHHH
Q 036198 434 LLEEVVN 440 (499)
Q Consensus 434 ~~~~m~~ 440 (499)
.|....+
T Consensus 127 ~f~~a~~ 133 (165)
T PRK15331 127 CFELVNE 133 (165)
T ss_pred HHHHHHh
Confidence 5555544
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.28 E-value=1.9 Score=37.96 Aligned_cols=178 Identities=11% Similarity=0.085 Sum_probs=92.7
Q ss_pred HHcCCHHHHHHHHHHHHHcC--CCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHc-----
Q 036198 283 VQNDRMEECFSLLGHMINSG--CLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDN----- 355 (499)
Q Consensus 283 ~~~~~~~~a~~~~~~m~~~~--~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~----- 355 (499)
.+.|++++|...|+.+...- -+-...+.-.++.++.+.++++.|....++..+.........|..-|.+++.-
T Consensus 45 L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs~~~~i~~ 124 (254)
T COG4105 45 LQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLSYFFQIDD 124 (254)
T ss_pred HhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhccCCc
Confidence 56677777777777776441 12223444455666777777777777777766553332333444444444421
Q ss_pred --CCHHHH---HHHHHHHHHCCCCcChhhHHHHHHHHHhcCCchHHHHHHHHHhHCCCCCCHHHH-HHHHHHHHhCCCHH
Q 036198 356 --KNGDEA---LRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTY-CVMIDGLFDCSKVE 429 (499)
Q Consensus 356 --g~~~~a---~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~-~~li~~~~~~g~~~ 429 (499)
.+...+ ..-|++++.. -||. .-...|...+..+... ..-+ ..+.+-|.+.|.+.
T Consensus 125 ~~rDq~~~~~A~~~f~~~i~r--yPnS-------------~Ya~dA~~~i~~~~d~-----LA~~Em~IaryY~kr~~~~ 184 (254)
T COG4105 125 VTRDQSAARAAFAAFKELVQR--YPNS-------------RYAPDAKARIVKLNDA-----LAGHEMAIARYYLKRGAYV 184 (254)
T ss_pred cccCHHHHHHHHHHHHHHHHH--CCCC-------------cchhhHHHHHHHHHHH-----HHHHHHHHHHHHHHhcChH
Confidence 122222 2223333321 1221 1112222222222111 0011 23445667777777
Q ss_pred HHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcChhH
Q 036198 430 EACFLLEEVVNKGLKLP---YRKFDSYLMQLSVIGDLGAIHKLSDHMRKFYNPVI 481 (499)
Q Consensus 430 ~a~~~~~~m~~~~~~p~---~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~ 481 (499)
.|..-+++|++. .+-+ ...+-.+..+|...|-.++|.+.-.-+..-++...
T Consensus 185 AA~nR~~~v~e~-y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N~p~s~ 238 (254)
T COG4105 185 AAINRFEEVLEN-YPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGANYPDSQ 238 (254)
T ss_pred HHHHHHHHHHhc-cccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCc
Confidence 777777777766 2212 33455566777788888888777777766666554
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.12 E-value=0.34 Score=42.82 Aligned_cols=104 Identities=17% Similarity=0.255 Sum_probs=58.4
Q ss_pred cCHHhHHHHHHHHHh-----cCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcChhh
Q 036198 305 PDVSTYKEVLEGMCL-----AGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQT 379 (499)
Q Consensus 305 ~~~~~~~~ll~~~~~-----~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~ 379 (499)
-|..+|-..+..+.. .+.++-....++.|.+.|+.-|..+|+.||+.+-+.. +.| ...
T Consensus 65 RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgk----------------fiP-~nv 127 (406)
T KOG3941|consen 65 RDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGK----------------FIP-QNV 127 (406)
T ss_pred ccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccc----------------ccc-HHH
Confidence 344555555554443 2445555555666666666666666666666553211 111 111
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHhHCCCCCCHHHHHHHHHHHHhCCC
Q 036198 380 YNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSK 427 (499)
Q Consensus 380 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 427 (499)
+....-.|-+ +-+-+.+++++|...|+.||..+-..++.+|.+.+-
T Consensus 128 fQ~~F~HYP~--QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 128 FQKVFLHYPQ--QQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred HHHHHhhCch--hhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccc
Confidence 2222222221 223477888888888888888888888888877665
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=95.10 E-value=1.1 Score=36.57 Aligned_cols=91 Identities=12% Similarity=0.030 Sum_probs=66.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcChhhHHHHHHHHHhcCCc
Q 036198 314 LEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEP 393 (499)
Q Consensus 314 l~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~ 393 (499)
..-+...|++++|..+|.-+...++. +..-|..|..++-..+++++|...|......+. -|...+-....+|...|+.
T Consensus 44 Ay~~y~~Gk~~eA~~~F~~L~~~d~~-n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~-~dp~p~f~agqC~l~l~~~ 121 (165)
T PRK15331 44 AYEFYNQGRLDEAETFFRFLCIYDFY-NPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK-NDYRPVFFTGQCQLLMRKA 121 (165)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-CCCCccchHHHHHHHhCCH
Confidence 34456788899999998887766543 555566666777778889999988887765542 3444455567788888999
Q ss_pred hHHHHHHHHHhHC
Q 036198 394 DGAFETWHEMDKR 406 (499)
Q Consensus 394 ~~a~~~~~~m~~~ 406 (499)
+.|...|....+.
T Consensus 122 ~~A~~~f~~a~~~ 134 (165)
T PRK15331 122 AKARQCFELVNER 134 (165)
T ss_pred HHHHHHHHHHHhC
Confidence 9999888887763
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=94.82 E-value=2.3 Score=42.21 Aligned_cols=60 Identities=13% Similarity=0.014 Sum_probs=25.7
Q ss_pred HHHHhcCCHhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 036198 242 DTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINS 301 (499)
Q Consensus 242 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~ 301 (499)
+.+...|++++|++.|+........-.+.....+--+.-.+.-..+|++|...|..+.+.
T Consensus 275 R~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~ 334 (468)
T PF10300_consen 275 RLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKE 334 (468)
T ss_pred HHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhc
Confidence 444455666666666654432110000111222223333344455555555555555543
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.79 E-value=0.29 Score=43.26 Aligned_cols=104 Identities=11% Similarity=0.030 Sum_probs=63.8
Q ss_pred CHhhHHHHHHHHHH-----cCCHHHHHHHHHHHHHCCCCcChhhHHHHHHHHHhcCCchHHHHHHHHHhHCCCCCCHHHH
Q 036198 341 DIVTYNCFLKVLCD-----NKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTY 415 (499)
Q Consensus 341 ~~~~~~~li~~~~~-----~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~ 415 (499)
|..+|-..+..+.. .+..+=....++.|.+.|+.-|..+|+.|++.+-+-. +.|. ..+
T Consensus 66 dK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgk----------------fiP~-nvf 128 (406)
T KOG3941|consen 66 DKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGK----------------FIPQ-NVF 128 (406)
T ss_pred cHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccc----------------cccH-HHH
Confidence 55566666655543 2344555555566666666666666666665543221 1121 122
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 036198 416 CVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDL 463 (499)
Q Consensus 416 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~ 463 (499)
....-.|-+ +-+=+..++++|...|+.||..+-..+++++.+-|-.
T Consensus 129 Q~~F~HYP~--QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p 174 (406)
T KOG3941|consen 129 QKVFLHYPQ--QQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFP 174 (406)
T ss_pred HHHHhhCch--hhhHHHHHHHHHHHcCCCCchHHHHHHHHHhcccccc
Confidence 222222222 2244789999999999999999999999999887764
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.72 E-value=3.6 Score=42.36 Aligned_cols=178 Identities=19% Similarity=0.164 Sum_probs=123.6
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHhhcCCCCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH----HHhcCCHhHHH
Q 036198 179 ALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQTLEEMIQMGHAPDNFTYNTAIDT----FCKARMVTEAA 254 (499)
Q Consensus 179 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~~~~~la~~~~~~m~~~g~~p~~~~~~~li~~----~~~~g~~~~a~ 254 (499)
....-++.+++...++.|..+-+.-. .|..+...++.. +.+.|++++|.
T Consensus 336 ~le~kL~iL~kK~ly~~Ai~LAk~~~---------------------------~d~d~~~~i~~kYgd~Ly~Kgdf~~A~ 388 (933)
T KOG2114|consen 336 DLETKLDILFKKNLYKVAINLAKSQH---------------------------LDEDTLAEIHRKYGDYLYGKGDFDEAT 388 (933)
T ss_pred cHHHHHHHHHHhhhHHHHHHHHHhcC---------------------------CCHHHHHHHHHHHHHHHHhcCCHHHHH
Confidence 45667777888888888877755432 244444444444 55789999999
Q ss_pred HHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 036198 255 DLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMG 334 (499)
Q Consensus 255 ~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~ 334 (499)
..|-+.... ..|+ .+|.-|.....+.+-..+++.+.+.|+ .+...-+.|+.+|.+.++.++..++.+...
T Consensus 389 ~qYI~tI~~----le~s-----~Vi~kfLdaq~IknLt~YLe~L~~~gl-a~~dhttlLLncYiKlkd~~kL~efI~~~~ 458 (933)
T KOG2114|consen 389 DQYIETIGF----LEPS-----EVIKKFLDAQRIKNLTSYLEALHKKGL-ANSDHTTLLLNCYIKLKDVEKLTEFISKCD 458 (933)
T ss_pred HHHHHHccc----CChH-----HHHHHhcCHHHHHHHHHHHHHHHHccc-ccchhHHHHHHHHHHhcchHHHHHHHhcCC
Confidence 988776543 3443 356667777778888889999999885 466777889999999999999888877655
Q ss_pred hCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcChhhHHHHHHHHHhcCCchHHHHHHHHHh
Q 036198 335 NKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMD 404 (499)
Q Consensus 335 ~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 404 (499)
.|.. ..-....+..+.+.+-.++|..+-..... +......++ -..+++++|.+.+..+.
T Consensus 459 -~g~~--~fd~e~al~Ilr~snyl~~a~~LA~k~~~-----he~vl~ill---e~~~ny~eAl~yi~slp 517 (933)
T KOG2114|consen 459 -KGEW--FFDVETALEILRKSNYLDEAELLATKFKK-----HEWVLDILL---EDLHNYEEALRYISSLP 517 (933)
T ss_pred -Ccce--eeeHHHHHHHHHHhChHHHHHHHHHHhcc-----CHHHHHHHH---HHhcCHHHHHHHHhcCC
Confidence 3322 22345677777788888888776655432 334444444 35688999999988763
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=94.69 E-value=0.83 Score=40.52 Aligned_cols=105 Identities=16% Similarity=0.212 Sum_probs=62.7
Q ss_pred hHHHHHHHHHhcCCchHHHHHHHHHhHCCC--CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCC-CC-CHHHHHHHH
Q 036198 379 TYNMLISMYFELGEPDGAFETWHEMDKRGC--AQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL-KL-PYRKFDSYL 454 (499)
Q Consensus 379 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~--~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~-~p-~~~~~~~ll 454 (499)
.|+.-+..+ +.|++..|..-|....+... .-....+--|..++...|++++|..+|..+.+.-. .| -+.++--|.
T Consensus 144 ~Y~~A~~~~-ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALDLY-KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 455555543 45567777777766665421 11122344566667777777777777776665421 11 134555666
Q ss_pred HHHHhcCCHHHHHHHHHHHHhhcChhHHHH
Q 036198 455 MQLSVIGDLGAIHKLSDHMRKFYNPVIARR 484 (499)
Q Consensus 455 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~ 484 (499)
.+..+.|+.++|..+|+++.+.||....-.
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k~YP~t~aA~ 252 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIKRYPGTDAAK 252 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHHHCCCCHHHH
Confidence 677777777777777777777777655433
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=94.61 E-value=1.8 Score=41.18 Aligned_cols=145 Identities=16% Similarity=0.190 Sum_probs=88.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhH-HHHHH
Q 036198 273 KTYAIMIVALVQNDRMEECFSLLGHMINSG-CLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTY-NCFLK 350 (499)
Q Consensus 273 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~-~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~-~~li~ 350 (499)
.+|...|....+....+.|..+|-++.+.| +.+++..++++|..++ .|+...|..+|+.=... -||...| +-.+.
T Consensus 398 ~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~--f~d~~~y~~kyl~ 474 (660)
T COG5107 398 FVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK--FPDSTLYKEKYLL 474 (660)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh--CCCchHHHHHHHH
Confidence 356666777677777777777887777777 5666777777777555 46667777777653332 1333333 33455
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCcC--hhhHHHHHHHHHhcCCchHHHHHHHHHhHCCCCCCHHHHHHHHHHHH
Q 036198 351 VLCDNKNGDEALRLYGRMIEVGCWPS--VQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLF 423 (499)
Q Consensus 351 ~~~~~g~~~~a~~~~~~m~~~~~~~~--~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~ 423 (499)
.+...++-+.|..+|+..... +..+ ...|..+|.--..-|++..+..+=+.|.+. -|-..+...+..-|.
T Consensus 475 fLi~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~--~pQen~~evF~Sry~ 546 (660)
T COG5107 475 FLIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFREL--VPQENLIEVFTSRYA 546 (660)
T ss_pred HHHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHH--cCcHhHHHHHHHHHh
Confidence 556677777777777754432 1122 456777777777777777776666666553 344444444444443
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=94.51 E-value=3.4 Score=41.00 Aligned_cols=166 Identities=13% Similarity=0.097 Sum_probs=107.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCC-----HhhHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCCcChhh
Q 036198 310 YKEVLEGMCLAGKVEEAYKFLEEMGNKG-YPPD-----IVTYNCFLKVLCD----NKNGDEALRLYGRMIEVGCWPSVQT 379 (499)
Q Consensus 310 ~~~ll~~~~~~g~~~~a~~~~~~m~~~~-~~p~-----~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~~~~~~~~ 379 (499)
+..++...+=.|+-+.+++.+..-.+.+ +.-. .-.|..++..++. ....+.|.++++.+.+. -|+...
T Consensus 191 ~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--yP~s~l 268 (468)
T PF10300_consen 191 VLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--YPNSAL 268 (468)
T ss_pred HHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--CCCcHH
Confidence 4456666777788888888887765542 2211 1234444444443 35678899999998874 477666
Q ss_pred HHHH-HHHHHhcCCchHHHHHHHHHhHCC---CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 036198 380 YNML-ISMYFELGEPDGAFETWHEMDKRG---CAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLM 455 (499)
Q Consensus 380 ~~~l-i~~~~~~~~~~~a~~~~~~m~~~~---~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~ 455 (499)
|... .+.+...|++++|.+.|+...... .+.....+--+...+.-.+++++|...+..+.+..- .+..+|.-+.-
T Consensus 269 fl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~-WSka~Y~Y~~a 347 (468)
T PF10300_consen 269 FLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESK-WSKAFYAYLAA 347 (468)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccc-cHHHHHHHHHH
Confidence 5433 345567799999999999765321 112334555666777888999999999999987652 35555554443
Q ss_pred HH-HhcCCH-------HHHHHHHHHHHhhcC
Q 036198 456 QL-SVIGDL-------GAIHKLSDHMRKFYN 478 (499)
Q Consensus 456 ~~-~~~g~~-------~~a~~~~~~m~~~~~ 478 (499)
+| ...|+. ++|.+++.++.....
T Consensus 348 ~c~~~l~~~~~~~~~~~~a~~l~~~vp~l~~ 378 (468)
T PF10300_consen 348 ACLLMLGREEEAKEHKKEAEELFRKVPKLKQ 378 (468)
T ss_pred HHHHhhccchhhhhhHHHHHHHHHHHHHHHh
Confidence 33 567877 777888777765443
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=94.49 E-value=1.8 Score=33.76 Aligned_cols=138 Identities=17% Similarity=0.170 Sum_probs=71.1
Q ss_pred HHhcCCHhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHhH---HHHHHHHHhc
Q 036198 244 FCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTY---KEVLEGMCLA 320 (499)
Q Consensus 244 ~~~~g~~~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~---~~ll~~~~~~ 320 (499)
+.-.|.+++..++..+..... +..-+|-+|--....-+-+-..++++.+-+ -.|.... ..++.+|+..
T Consensus 12 ~ildG~V~qGveii~k~v~Ss------ni~E~NWvICNiiDaa~C~yvv~~LdsIGk---iFDis~C~NlKrVi~C~~~~ 82 (161)
T PF09205_consen 12 RILDGDVKQGVEIIEKTVNSS------NIKEYNWVICNIIDAADCDYVVETLDSIGK---IFDISKCGNLKRVIECYAKR 82 (161)
T ss_dssp HHHTT-HHHHHHHHHHHHHHS-------HHHHTHHHHHHHHH--HHHHHHHHHHHGG---GS-GGG-S-THHHHHHHHHT
T ss_pred HHHhchHHHHHHHHHHHcCcC------CccccceeeeecchhhchhHHHHHHHHHhh---hcCchhhcchHHHHHHHHHh
Confidence 344678888888888887654 444455555444444444445555544433 2333222 2234444443
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcChhhHHHHHHHHHhcCCchHHHHHH
Q 036198 321 GKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETW 400 (499)
Q Consensus 321 g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~ 400 (499)
|. +.......+.....+|+-+.-.+++.++.+. -.+++...-.+..+|.+.|+..++.+++
T Consensus 83 n~------------------~se~vD~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell 143 (161)
T PF09205_consen 83 NK------------------LSEYVDLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELL 143 (161)
T ss_dssp T---------------------HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred cc------------------hHHHHHHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHH
Confidence 32 3334455566666677777777777766542 2456666666677777777777777777
Q ss_pred HHHhHCCCC
Q 036198 401 HEMDKRGCA 409 (499)
Q Consensus 401 ~~m~~~~~~ 409 (499)
.+.-+.|++
T Consensus 144 ~~ACekG~k 152 (161)
T PF09205_consen 144 KEACEKGLK 152 (161)
T ss_dssp HHHHHTT-H
T ss_pred HHHHHhchH
Confidence 777666643
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=94.45 E-value=1.5 Score=34.94 Aligned_cols=120 Identities=13% Similarity=0.034 Sum_probs=67.9
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHCC--CCcChhhHHHHHHHHHhcCCchHHHHHHHHHhHCCCCCCHHHHHHHHHH
Q 036198 344 TYNCFLKVLCDNKNGDEALRLYGRMIEVG--CWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDG 421 (499)
Q Consensus 344 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~--~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~ 421 (499)
.|..-..+ .+.|++++|.+.|+.+...- -.-....--.|+.+|.+.+++++|...+++.++........-|...+.+
T Consensus 13 ly~~a~~~-l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~g 91 (142)
T PF13512_consen 13 LYQEAQEA-LQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRG 91 (142)
T ss_pred HHHHHHHH-HHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHH
Confidence 34433333 46678888888887777642 1123445566777777888888888888777776433333456666666
Q ss_pred HHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcChhHH
Q 036198 422 LFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHMRKFYNPVIA 482 (499)
Q Consensus 422 ~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~ 482 (499)
++.-...+ ..+..+. +..-|. +....|..-|+++.+.||.+..
T Consensus 92 L~~~~~~~---~~~~~~~--~~drD~-------------~~~~~A~~~f~~lv~~yP~S~y 134 (142)
T PF13512_consen 92 LSYYEQDE---GSLQSFF--RSDRDP-------------TPARQAFRDFEQLVRRYPNSEY 134 (142)
T ss_pred HHHHHHhh---hHHhhhc--ccccCc-------------HHHHHHHHHHHHHHHHCcCChh
Confidence 55433222 2222222 212121 2234777778888888777443
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.31 E-value=6.7 Score=39.64 Aligned_cols=205 Identities=11% Similarity=0.060 Sum_probs=96.3
Q ss_pred HHHHHhhCCCCCCHHHHHHHHHc--cCCChHHHHHHHHHhhcCCCCCC--------CHHHHHHHHHHHhcchhhhhhHHH
Q 036198 68 MEKALDSLGVPLTTDSVVGVLQR--FQFEEKIAFRFFMWAGHQDNYAH--------EPLAYNLMIDILSSTKYKAKQFRL 137 (499)
Q Consensus 68 ~~~al~~~~~~~~~~~~~~~l~~--~~~~~~~a~~~f~~~~~~~~~~~--------~~~~~~~li~~~~~~~~~~~~~~~ 137 (499)
+++|.+.....+.|.++.-+-+. .+.+-+.|...|-....-.|++. +...-.+=|.+ --|.|++
T Consensus 679 ledA~qfiEdnPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~------~~g~fee 752 (1189)
T KOG2041|consen 679 LEDAIQFIEDNPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISA------FYGEFEE 752 (1189)
T ss_pred hHHHHHHHhcCCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhh------hhcchhH
Confidence 44445555556777665443322 12333445555544443334321 11111122222 2378999
Q ss_pred HHHHHHHHHHcCCCc---ccHHHHHHHHHHHHHhhhcCCCC----CHHHHHHHHHHHHhCCChHHHHHHHHHhhcCCCCC
Q 036198 138 VCSMLDYMKRNNKVF---VPVDVLLMILKQYTEKIKVKTQP----EINALNLLLDALCKCGLVDYAETICKRVKNKVKPN 210 (499)
Q Consensus 138 a~~~~~~m~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~ 210 (499)
|.+++-+|-++.... .....+..+++.+ ...|-.. -..+|+.+...++....+++|.+.|..-...
T Consensus 753 aek~yld~drrDLAielr~klgDwfrV~qL~---r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~---- 825 (1189)
T KOG2041|consen 753 AEKLYLDADRRDLAIELRKKLGDWFRVYQLI---RNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDT---- 825 (1189)
T ss_pred hhhhhhccchhhhhHHHHHhhhhHHHHHHHH---HccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch----
Confidence 999988887665321 0111122222211 1111111 1346788888888888888888877654320
Q ss_pred hhhHHHH-HHHHHHHHHH--cCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCC
Q 036198 211 ANTYNIL-GMQTLEEMIQ--MGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDR 287 (499)
Q Consensus 211 ~~~~~~l-a~~~~~~m~~--~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~ 287 (499)
......+ -.+.|+++.. ..++-+....-.+..++...|.-++|.+.|-+. + .|- +.+..|...++
T Consensus 826 e~~~ecly~le~f~~LE~la~~Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr~---s----~pk-----aAv~tCv~LnQ 893 (1189)
T KOG2041|consen 826 ENQIECLYRLELFGELEVLARTLPEDSELLPVMADMFTSVGMCDQAVEAYLRR---S----LPK-----AAVHTCVELNQ 893 (1189)
T ss_pred HhHHHHHHHHHhhhhHHHHHHhcCcccchHHHHHHHHHhhchHHHHHHHHHhc---c----CcH-----HHHHHHHHHHH
Confidence 0000000 1222332221 123334455555666666666666666655432 1 121 23445556666
Q ss_pred HHHHHHHHHH
Q 036198 288 MEECFSLLGH 297 (499)
Q Consensus 288 ~~~a~~~~~~ 297 (499)
|.+|.++-+.
T Consensus 894 W~~avelaq~ 903 (1189)
T KOG2041|consen 894 WGEAVELAQR 903 (1189)
T ss_pred HHHHHHHHHh
Confidence 6666555443
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=94.30 E-value=0.84 Score=43.77 Aligned_cols=65 Identities=12% Similarity=0.086 Sum_probs=45.2
Q ss_pred cCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH----hhHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 036198 305 PDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDI----VTYNCFLKVLCDNKNGDEALRLYGRMIEV 371 (499)
Q Consensus 305 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~----~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 371 (499)
.+...++.+..+|.+.|++++|...|++..+.+ |+. .+|..+..+|.+.|+.++|...+++..+.
T Consensus 73 ~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~--Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 73 KTAEDAVNLGLSLFSKGRVKDALAQFETALELN--PNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 345667777777777777777777777766653 332 34777777777777777777777777664
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=94.30 E-value=2.2 Score=41.10 Aligned_cols=66 Identities=11% Similarity=0.012 Sum_probs=58.1
Q ss_pred CCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 036198 231 APDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTA----KTYAIMIVALVQNDRMEECFSLLGHMINS 301 (499)
Q Consensus 231 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~p~~----~~~~~ll~~~~~~~~~~~a~~~~~~m~~~ 301 (499)
+.+...++.+..+|.+.|++++|+..|++..+.. |+. .+|..+..+|...|+.++|.+.+++..+.
T Consensus 72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~-----Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALELN-----PNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-----CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3467889999999999999999999999998865 442 46999999999999999999999999885
|
|
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=94.21 E-value=4.5 Score=37.25 Aligned_cols=131 Identities=12% Similarity=0.225 Sum_probs=86.3
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHh--cC----CHhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCC----HH
Q 036198 220 QTLEEMIQMGHAPDNFTYNTAIDTFCK--AR----MVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDR----ME 289 (499)
Q Consensus 220 ~~~~~m~~~g~~p~~~~~~~li~~~~~--~g----~~~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~----~~ 289 (499)
.+++.|.+.|+.-+..+|-+....... .. ...+|..+|+.|++...-...++...+..++.. ..++ .+
T Consensus 83 ~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~e~l~~ 160 (297)
T PF13170_consen 83 DIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDVEELAE 160 (297)
T ss_pred HHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccHHHHHH
Confidence 457778888888787776554444333 22 256799999999998766567777788888766 3333 46
Q ss_pred HHHHHHHHHHHcCCCcCHHh--HHHHHHHHHhcCC--HHHHHHHHHHHHhCCCCCCHhhHHHHHHHH
Q 036198 290 ECFSLLGHMINSGCLPDVST--YKEVLEGMCLAGK--VEEAYKFLEEMGNKGYPPDIVTYNCFLKVL 352 (499)
Q Consensus 290 ~a~~~~~~m~~~~~~~~~~~--~~~ll~~~~~~g~--~~~a~~~~~~m~~~~~~p~~~~~~~li~~~ 352 (499)
.++.+|+.+.+.|+..+... ...++..+..... ...+.++++.+.+.|+++....|..+.-..
T Consensus 161 ~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGlLa 227 (297)
T PF13170_consen 161 RMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGLLA 227 (297)
T ss_pred HHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHHHH
Confidence 78888888888887665432 2223322222222 447788888888888888877776654433
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=93.91 E-value=9.1 Score=39.65 Aligned_cols=141 Identities=16% Similarity=0.169 Sum_probs=81.3
Q ss_pred HHHHHHHHhccCCCchHHHHHhhC----CCCCCHHHHHHHHHccCCChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhc
Q 036198 52 AKLYEAIIDNSNAYDNMEKALDSL----GVPLTTDSVVGVLQRFQFEEKIAFRFFMWAGHQDNYAHEPLAYNLMIDILSS 127 (499)
Q Consensus 52 ~~~~~~l~~~~~~~~~~~~al~~~----~~~~~~~~~~~~l~~~~~~~~~a~~~f~~~~~~~~~~~~~~~~~~li~~~~~ 127 (499)
..+...-.+.+.+.|++++|..++ +.--++.++...|.. ..-.-+--+-|...+.|+ .+...-..|+..|.
T Consensus 368 ~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~le~s~Vi~kfLda---q~IknLt~YLe~L~~~gl-a~~dhttlLLncYi- 442 (933)
T KOG2114|consen 368 AEIHRKYGDYLYGKGDFDEATDQYIETIGFLEPSEVIKKFLDA---QRIKNLTSYLEALHKKGL-ANSDHTTLLLNCYI- 442 (933)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHcccCChHHHHHHhcCH---HHHHHHHHHHHHHHHccc-ccchhHHHHHHHHH-
Confidence 344555566677889999998876 222222233222211 111122333344445554 35566778899999
Q ss_pred chhhhhhHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHH---Hh--hhcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHH
Q 036198 128 TKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLMILKQYT---EK--IKVKTQPEINALNLLLDALCKCGLVDYAETICKR 202 (499)
Q Consensus 128 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~l~~~~---~~--~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 202 (499)
+.++.++..++.+... .|....+.++...+++.+. ++ .......+......+ +-..|++++|.+.+..
T Consensus 443 ---Klkd~~kL~efI~~~~-~g~~~fd~e~al~Ilr~snyl~~a~~LA~k~~~he~vl~il---le~~~ny~eAl~yi~s 515 (933)
T KOG2114|consen 443 ---KLKDVEKLTEFISKCD-KGEWFFDVETALEILRKSNYLDEAELLATKFKKHEWVLDIL---LEDLHNYEEALRYISS 515 (933)
T ss_pred ---HhcchHHHHHHHhcCC-CcceeeeHHHHHHHHHHhChHHHHHHHHHHhccCHHHHHHH---HHHhcCHHHHHHHHhc
Confidence 9999999888887765 5544556666666665431 11 222222333344433 3455889999999888
Q ss_pred hh
Q 036198 203 VK 204 (499)
Q Consensus 203 m~ 204 (499)
++
T Consensus 516 lp 517 (933)
T KOG2114|consen 516 LP 517 (933)
T ss_pred CC
Confidence 75
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=93.80 E-value=1.3 Score=39.39 Aligned_cols=99 Identities=18% Similarity=0.211 Sum_probs=68.7
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-C-CcCHHhHHHH
Q 036198 236 TYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSG-C-LPDVSTYKEV 313 (499)
Q Consensus 236 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~-~-~~~~~~~~~l 313 (499)
.|+..+..+ +.|++..|...|....+.... ..-....+--|..++...|++++|..+|..+.+.- - +--+..+-.|
T Consensus 144 ~Y~~A~~~~-ksgdy~~A~~~F~~fi~~YP~-s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKl 221 (262)
T COG1729 144 LYNAALDLY-KSGDYAEAEQAFQAFIKKYPN-STYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKL 221 (262)
T ss_pred HHHHHHHHH-HcCCHHHHHHHHHHHHHcCCC-CcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHH
Confidence 566655554 566788999999888887643 23334455567888888888888888888887641 1 1123455566
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhC
Q 036198 314 LEGMCLAGKVEEAYKFLEEMGNK 336 (499)
Q Consensus 314 l~~~~~~g~~~~a~~~~~~m~~~ 336 (499)
.....+.|+.++|...|+++.++
T Consensus 222 g~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 222 GVSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHHHhcCHHHHHHHHHHHHHH
Confidence 66777888888888888887776
|
|
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=93.68 E-value=3.4 Score=33.99 Aligned_cols=136 Identities=10% Similarity=0.082 Sum_probs=81.8
Q ss_pred CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHhHHH
Q 036198 233 DNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKE 312 (499)
Q Consensus 233 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ 312 (499)
+...|...+.. +..+..++|+.-|..+.+.|... -.+..---+.......|+...|...|++.-...-.|-..-=..
T Consensus 58 sgd~flaAL~l-A~~~k~d~Alaaf~~lektg~g~--YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~A 134 (221)
T COG4649 58 SGDAFLAALKL-AQENKTDDALAAFTDLEKTGYGS--YPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLA 134 (221)
T ss_pred chHHHHHHHHH-HHcCCchHHHHHHHHHHhcCCCc--chHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHH
Confidence 33445444443 45567788888888888776431 1122223333455677888888888888776543333321111
Q ss_pred HH---HHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 036198 313 VL---EGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEV 371 (499)
Q Consensus 313 ll---~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 371 (499)
-+ -.+...|.++.....++-+-..+.+.-...-..|.-+-.+.|++..|.+.|..+...
T Consensus 135 Rlraa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~D 196 (221)
T COG4649 135 RLRAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAND 196 (221)
T ss_pred HHHHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHcc
Confidence 11 234567777777777777666555444555566666667788888888888777654
|
|
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=93.56 E-value=6 Score=36.44 Aligned_cols=131 Identities=13% Similarity=0.179 Sum_probs=85.3
Q ss_pred HHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHh--cC----CHHHHHHHHHHHHhCCC---CCCHhhHHHHHHHHHHcCCH
Q 036198 288 MEECFSLLGHMINSGCLPDVSTYKEVLEGMCL--AG----KVEEAYKFLEEMGNKGY---PPDIVTYNCFLKVLCDNKNG 358 (499)
Q Consensus 288 ~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~--~g----~~~~a~~~~~~m~~~~~---~p~~~~~~~li~~~~~~g~~ 358 (499)
+++...+++.|.+.|+.-+..+|-+..-.... .. ....|.++++.|++... .++..++..++.. ..++.
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 45677888999999998888777654333333 22 35678899999988732 2344566666554 33333
Q ss_pred ----HHHHHHHHHHHHCCCCcCh--hhHHHHHHHHHhcCC--chHHHHHHHHHhHCCCCCCHHHHHHHHH
Q 036198 359 ----DEALRLYGRMIEVGCWPSV--QTYNMLISMYFELGE--PDGAFETWHEMDKRGCAQDVDTYCVMID 420 (499)
Q Consensus 359 ----~~a~~~~~~m~~~~~~~~~--~~~~~li~~~~~~~~--~~~a~~~~~~m~~~~~~p~~~~~~~li~ 420 (499)
+.++.+|+.+.+.|+..+- ...+.++..+-.... ..++.++++.+.+.|+++....|..+.-
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGl 225 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGL 225 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHH
Confidence 5677888888887876543 344444443332222 3478889999999999988877776543
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=93.52 E-value=7.9 Score=37.70 Aligned_cols=164 Identities=10% Similarity=0.057 Sum_probs=87.7
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHH
Q 036198 239 TAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMC 318 (499)
Q Consensus 239 ~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~ 318 (499)
.+|.-.-+..+.+.-++.-++..+.. |+-.+.- ++-+--......++.++|++..+.|- ..+ .
T Consensus 173 ~IMq~AWRERnp~aRIkaA~eALei~-----pdCAdAY-ILLAEEeA~Ti~Eae~l~rqAvkAgE----~~l-------g 235 (539)
T PF04184_consen 173 EIMQKAWRERNPQARIKAAKEALEIN-----PDCADAY-ILLAEEEASTIVEAEELLRQAVKAGE----ASL-------G 235 (539)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhh-----hhhhHHH-hhcccccccCHHHHHHHHHHHHHHHH----Hhh-------c
Confidence 34444555556666666666655543 3332211 11122234557888888888776541 111 1
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC-cChhhHHHHHHHHHhcCCchHHH
Q 036198 319 LAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCW-PSVQTYNMLISMYFELGEPDGAF 397 (499)
Q Consensus 319 ~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~-~~~~~~~~li~~~~~~~~~~~a~ 397 (499)
+.......-..++.+..+...|-..+-..+..++-+.|+.++|.+.+.+|.+.... -.......|+.++...+.+.++.
T Consensus 236 ~s~~~~~~g~~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q 315 (539)
T PF04184_consen 236 KSQFLQHHGHFWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQ 315 (539)
T ss_pred hhhhhhcccchhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHH
Confidence 11111111112222223333333444445666666788888888888888764322 23346677888888888888888
Q ss_pred HHHHHHhHCCCC-CCHHHHHHHH
Q 036198 398 ETWHEMDKRGCA-QDVDTYCVMI 419 (499)
Q Consensus 398 ~~~~~m~~~~~~-p~~~~~~~li 419 (499)
.++.+-.+...+ .-..+|+..+
T Consensus 316 ~lL~kYdDi~lpkSAti~YTaAL 338 (539)
T PF04184_consen 316 ALLAKYDDISLPKSATICYTAAL 338 (539)
T ss_pred HHHHHhccccCCchHHHHHHHHH
Confidence 888886543221 2234566544
|
The molecular function of this protein is uncertain. |
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=93.50 E-value=5.9 Score=36.23 Aligned_cols=175 Identities=15% Similarity=0.091 Sum_probs=95.0
Q ss_pred hhhhHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHhhcCCCCC
Q 036198 131 KAKQFRLVCSMLDYMKRNNKVFVPVDVLLMILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPN 210 (499)
Q Consensus 131 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~ 210 (499)
+.|+++.|..++.+...... ..++.....+. ...||.-...+.+..+++.|...+++..+
T Consensus 5 ~~~~~~~A~~~~~K~~~~~~-~~~~~~~~~La--------------~~~yn~G~~l~~~~~~~~~a~~wL~~a~~----- 64 (278)
T PF08631_consen 5 KQGDLDLAEHMYSKAKDLLN-SLDPDMAEELA--------------RVCYNIGKSLLSKKDKYEEAVKWLQRAYD----- 64 (278)
T ss_pred hhCCHHHHHHHHHHhhhHHh-cCCcHHHHHHH--------------HHHHHHHHHHHHcCCChHHHHHHHHHHHH-----
Confidence 78999999999998876541 11111111111 12455555555444488888877776432
Q ss_pred hhhHHHHHHHHHHHH-HHcCCCCC-----HHHHHHHHHHHHhcCCHh---HHHHHHHHHHHcCCCCCCCCHHHHHHHHHH
Q 036198 211 ANTYNILGMQTLEEM-IQMGHAPD-----NFTYNTAIDTFCKARMVT---EAADLFEFMRTKGSTISSPTAKTYAIMIVA 281 (499)
Q Consensus 211 ~~~~~~la~~~~~~m-~~~g~~p~-----~~~~~~li~~~~~~g~~~---~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~ 281 (499)
+++.. ......|+ ..++..++.+|...+..+ +|.++++.+..... -....+..-+..
T Consensus 65 ----------~l~~~~~~~~~~~~~~elr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~----~~~~~~~L~l~i 130 (278)
T PF08631_consen 65 ----------ILEKPGKMDKLSPDGSELRLSILRLLANAYLEWDTYESVEKALNALRLLESEYG----NKPEVFLLKLEI 130 (278)
T ss_pred ----------HHHhhhhccccCCcHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCC----CCcHHHHHHHHH
Confidence 23221 11112223 235566777777776644 45556666655441 124555566667
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHH---HhcCCHHHHHHHHHHHHhCCCCCC
Q 036198 282 LVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGM---CLAGKVEEAYKFLEEMGNKGYPPD 341 (499)
Q Consensus 282 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~---~~~g~~~~a~~~~~~m~~~~~~p~ 341 (499)
+.+.++.+.+.+++.+|...- ......+..++..+ .... ...|...+..+....+.|.
T Consensus 131 l~~~~~~~~~~~~L~~mi~~~-~~~e~~~~~~l~~i~~l~~~~-~~~a~~~ld~~l~~r~~~~ 191 (278)
T PF08631_consen 131 LLKSFDEEEYEEILMRMIRSV-DHSESNFDSILHHIKQLAEKS-PELAAFCLDYLLLNRFKSS 191 (278)
T ss_pred HhccCChhHHHHHHHHHHHhc-ccccchHHHHHHHHHHHHhhC-cHHHHHHHHHHHHHHhCCC
Confidence 767888888888888888662 22344455555444 2222 3344455544444433333
|
It is also involved in sporulation []. |
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=93.49 E-value=0.27 Score=30.19 Aligned_cols=36 Identities=6% Similarity=-0.051 Sum_probs=20.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhcChhHHHH
Q 036198 449 KFDSYLMQLSVIGDLGAIHKLSDHMRKFYNPVIARR 484 (499)
Q Consensus 449 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~ 484 (499)
++..+..+|...|++++|.++++++.+..|..+.-+
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~ 38 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALDPDDPEAW 38 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHH
Confidence 444555566666666666666666666555544433
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=93.44 E-value=3.3 Score=33.16 Aligned_cols=84 Identities=13% Similarity=0.113 Sum_probs=41.6
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcC
Q 036198 277 IMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNK 356 (499)
Q Consensus 277 ~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g 356 (499)
.++..+...+.......+++.+...+ ..+....+.++..|++.+ ..+..+.+.. ..+......++..|.+.+
T Consensus 12 ~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~-~~~ll~~l~~------~~~~yd~~~~~~~c~~~~ 83 (140)
T smart00299 12 EVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYD-PQKEIERLDN------KSNHYDIEKVGKLCEKAK 83 (140)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHC-HHHHHHHHHh------ccccCCHHHHHHHHHHcC
Confidence 34445555555555566655555554 245555555666655543 2233333331 123333344555555556
Q ss_pred CHHHHHHHHHHH
Q 036198 357 NGDEALRLYGRM 368 (499)
Q Consensus 357 ~~~~a~~~~~~m 368 (499)
.++++..++..+
T Consensus 84 l~~~~~~l~~k~ 95 (140)
T smart00299 84 LYEEAVELYKKD 95 (140)
T ss_pred cHHHHHHHHHhh
Confidence 565665555554
|
|
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=93.41 E-value=3.9 Score=33.80 Aligned_cols=136 Identities=17% Similarity=0.243 Sum_probs=81.4
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 036198 218 GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGH 297 (499)
Q Consensus 218 a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 297 (499)
..+++..+.+.|++|+...+..+++.+.+.|++.....++. .+ +-+|.......+-.+. +....+.++=-+
T Consensus 13 llEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~qllq----~~---Vi~DSk~lA~~LLs~~--~~~~~~~Ql~lD 83 (167)
T PF07035_consen 13 LLEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQLLQ----YH---VIPDSKPLACQLLSLG--NQYPPAYQLGLD 83 (167)
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHh----hc---ccCCcHHHHHHHHHhH--ccChHHHHHHHH
Confidence 34556666778888888899999999999888766555554 33 3344443333332222 223444555445
Q ss_pred HHHcCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 036198 298 MINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIE 370 (499)
Q Consensus 298 m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 370 (499)
|.++ =...+..+++.+...|++-+|.++.+..... +......++.+..+.++...-..+|+-..+
T Consensus 84 MLkR----L~~~~~~iievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~ 148 (167)
T PF07035_consen 84 MLKR----LGTAYEEIIEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSNDDQLFYAVFRFFEE 148 (167)
T ss_pred HHHH----hhhhHHHHHHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 5433 0113555777788888888888888775332 223335566666677776665555555544
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=93.30 E-value=6.4 Score=36.01 Aligned_cols=132 Identities=20% Similarity=0.174 Sum_probs=69.9
Q ss_pred HHhCCChHHHHHHHHHhhcC---CCCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHc
Q 036198 187 LCKCGLVDYAETICKRVKNK---VKPNANTYNILGMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTK 263 (499)
Q Consensus 187 ~~~~g~~~~A~~~~~~m~~~---~~p~~~~~~~la~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 263 (499)
..+.|+++.|..++.+.+.- ..|+..- .+ ....|+.-...+.+..+++.|..++++..+.
T Consensus 3 A~~~~~~~~A~~~~~K~~~~~~~~~~~~~~--~L---------------a~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~ 65 (278)
T PF08631_consen 3 AWKQGDLDLAEHMYSKAKDLLNSLDPDMAE--EL---------------ARVCYNIGKSLLSKKDKYEEAVKWLQRAYDI 65 (278)
T ss_pred chhhCCHHHHHHHHHHhhhHHhcCCcHHHH--HH---------------HHHHHHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence 35789999999999998752 1111110 00 1223444444444433888888877766543
Q ss_pred ----CC-CCCCCCH-----HHHHHHHHHHHHcCCH---HHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHHHHHH
Q 036198 264 ----GS-TISSPTA-----KTYAIMIVALVQNDRM---EECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFL 330 (499)
Q Consensus 264 ----~~-~~~~p~~-----~~~~~ll~~~~~~~~~---~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~ 330 (499)
+. ....|+. .+...++.+|...+.. ++|..+++.+.... +-...++-.-++.+.+.++.+.+.+.+
T Consensus 66 l~~~~~~~~~~~~~~elr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~-~~~~~~~~L~l~il~~~~~~~~~~~~L 144 (278)
T PF08631_consen 66 LEKPGKMDKLSPDGSELRLSILRLLANAYLEWDTYESVEKALNALRLLESEY-GNKPEVFLLKLEILLKSFDEEEYEEIL 144 (278)
T ss_pred HHhhhhccccCCcHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHhccCChhHHHHHH
Confidence 10 0022222 3445555666655553 34444555554331 122344444555555566777777777
Q ss_pred HHHHhC
Q 036198 331 EEMGNK 336 (499)
Q Consensus 331 ~~m~~~ 336 (499)
..|...
T Consensus 145 ~~mi~~ 150 (278)
T PF08631_consen 145 MRMIRS 150 (278)
T ss_pred HHHHHh
Confidence 776665
|
It is also involved in sporulation []. |
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=93.22 E-value=11 Score=38.52 Aligned_cols=286 Identities=12% Similarity=0.105 Sum_probs=163.1
Q ss_pred HHHHHHHHhCCChHHHHHHHHHhhcCCCCChhhHHHH-----------HHHHHHHHHHc-CC-CCCHHHHHHHHHHHHhc
Q 036198 181 NLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNIL-----------GMQTLEEMIQM-GH-APDNFTYNTAIDTFCKA 247 (499)
Q Consensus 181 ~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~~~~~l-----------a~~~~~~m~~~-g~-~p~~~~~~~li~~~~~~ 247 (499)
..+|+-+...+.+..|.++-..+......+...|... -..+++.+.+. +. --+..+|..+.+-...+
T Consensus 441 ~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~~~~~iSy~~iA~~Ay~~ 520 (829)
T KOG2280|consen 441 EVVIDRLVDRHLYSVAIQVAKLLNLPESQGDRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAKLTPGISYAAIARRAYQE 520 (829)
T ss_pred hhhhHHHHhcchhHHHHHHHHHhCCccccccHHHHHHHHHHHhccCccchHHHHHHHHHhcccCCCceeHHHHHHHHHhc
Confidence 3456667777788888887776654322223333332 12222222211 11 13455677888888889
Q ss_pred CCHhHHHHHHHHHHHcCCCC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-----------CCCcCHHhHHHHHH
Q 036198 248 RMVTEAADLFEFMRTKGSTI-SSPTAKTYAIMIVALVQNDRMEECFSLLGHMINS-----------GCLPDVSTYKEVLE 315 (499)
Q Consensus 248 g~~~~a~~~~~~m~~~~~~~-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~-----------~~~~~~~~~~~ll~ 315 (499)
|+.+.|..+.+.=...+... .-.+..-+...+.-+..+|+.+-...++-.|... ..+.....|.-+++
T Consensus 521 GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~~~s~l~~~l~~~p~a~~lY~~~~r 600 (829)
T KOG2280|consen 521 GRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKLNRSSLFMTLRNQPLALSLYRQFMR 600 (829)
T ss_pred CcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHhchhhhHHHHHHHH
Confidence 99999999887432222100 0012234566677778888888888887776653 11222223332222
Q ss_pred --------HHHhcCCHHHHHHHH--HHHHhC-CCCCCHhhHHHHHHHHHHcCCHH----------HHHHHHHHHHH-CCC
Q 036198 316 --------GMCLAGKVEEAYKFL--EEMGNK-GYPPDIVTYNCFLKVLCDNKNGD----------EALRLYGRMIE-VGC 373 (499)
Q Consensus 316 --------~~~~~g~~~~a~~~~--~~m~~~-~~~p~~~~~~~li~~~~~~g~~~----------~a~~~~~~m~~-~~~ 373 (499)
.+.+.++-..+..-| +..... -+.+-.......-+++.+..... .-+++.+.+.. .|.
T Consensus 601 ~~~~~~l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~lk~~a~~~a~sk~~s~e~ka~ed~~kLl~lQ~~Le~q~~~ 680 (829)
T KOG2280|consen 601 HQDRATLYDFYNQDDNHQALASFHLQASYAAETIEGRIPALKTAANAFAKSKEKSFEAKALEDQMKLLKLQRTLEDQFGG 680 (829)
T ss_pred hhchhhhhhhhhcccchhhhhhhhhhhhhhhhhhcccchhHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 111222222222211 110000 01111222333444454443311 12223333332 233
Q ss_pred CcChhhHHHHHHHHHhcCCchHHHHHHHHHhHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 036198 374 WPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSY 453 (499)
Q Consensus 374 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l 453 (499)
.....+.+--+.-+...|+..+|.++-.+.+ -||...|..-+.+++..+++++-+++-+.+. ++.-|.-+
T Consensus 681 ~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAkskk------sPIGy~PF 750 (829)
T KOG2280|consen 681 SFVDLSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSKK------SPIGYLPF 750 (829)
T ss_pred ccccCcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhccC------CCCCchhH
Confidence 3445566777777888999999999888765 4788899999999999999998887776543 25567778
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhh
Q 036198 454 LMQLSVIGDLGAIHKLSDHMRKF 476 (499)
Q Consensus 454 l~~~~~~g~~~~a~~~~~~m~~~ 476 (499)
..+|.+.|+.++|.+++-+....
T Consensus 751 Ve~c~~~~n~~EA~KYiprv~~l 773 (829)
T KOG2280|consen 751 VEACLKQGNKDEAKKYIPRVGGL 773 (829)
T ss_pred HHHHHhcccHHHHhhhhhccCCh
Confidence 89999999999999998877554
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=93.13 E-value=3 Score=39.26 Aligned_cols=139 Identities=14% Similarity=0.031 Sum_probs=82.4
Q ss_pred HHHHHHhCCChHHHHHHHHHhhcCCCCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHH
Q 036198 183 LLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRT 262 (499)
Q Consensus 183 li~~~~~~g~~~~A~~~~~~m~~~~~p~~~~~~~la~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 262 (499)
-.+.|.+.|++..|..-|++...-+.-+ ..+. -++... -...-..++..+.-+|.+.+++..|++.....+.
T Consensus 214 ~Gn~~fK~gk~~~A~~~Yerav~~l~~~-~~~~------~ee~~~-~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe 285 (397)
T KOG0543|consen 214 RGNVLFKEGKFKLAKKRYERAVSFLEYR-RSFD------EEEQKK-AEALKLACHLNLAACYLKLKEYKEAIESCNKVLE 285 (397)
T ss_pred hhhHHHhhchHHHHHHHHHHHHHHhhcc-ccCC------HHHHHH-HHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHh
Confidence 3457889999999999988864410000 0000 000000 0111234567777788888888888888888877
Q ss_pred cCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHH-HhcCCH-HHHHHHHHHHHh
Q 036198 263 KGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGM-CLAGKV-EEAYKFLEEMGN 335 (499)
Q Consensus 263 ~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~-~~~g~~-~~a~~~~~~m~~ 335 (499)
.+ ++|.-..---..+|...|+++.|...|+.+++. .|+....+.=+..| .+..+. +...++|..|-.
T Consensus 286 ~~----~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~--~P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF~ 354 (397)
T KOG0543|consen 286 LD----PNNVKALYRRGQALLALGEYDLARDDFQKALKL--EPSNKAARAELIKLKQKIREYEEKEKKMYANMFA 354 (397)
T ss_pred cC----CCchhHHHHHHHHHHhhccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 75 567777777777788888888888888888775 45544444333333 333322 333556666543
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=93.06 E-value=5.7 Score=34.75 Aligned_cols=201 Identities=11% Similarity=0.063 Sum_probs=101.0
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHhhcCCCCChhhHHHH-----HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHH
Q 036198 179 ALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNIL-----GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEA 253 (499)
Q Consensus 179 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~~~~~l-----a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a 253 (499)
.|.-.-.+|-...++++|...+.+..+....|...|+.- +.-+..+|.+. +--+..|+.....|..+|..+-|
T Consensus 33 ~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~kl--sEvvdl~eKAs~lY~E~GspdtA 110 (308)
T KOG1585|consen 33 LYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKL--SEVVDLYEKASELYVECGSPDTA 110 (308)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHh--HHHHHHHHHHHHHHHHhCCcchH
Confidence 466666778888899999888777665433343334333 22222222221 00112233333444444444433
Q ss_pred HHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc---C--CCcCHHhHHHHHHHHHhcCCHHHHHH
Q 036198 254 ADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINS---G--CLPDVSTYKEVLEGMCLAGKVEEAYK 328 (499)
Q Consensus 254 ~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~---~--~~~~~~~~~~ll~~~~~~g~~~~a~~ 328 (499)
-..+++.-+ ...+.++++|+++|.+...- + ...-...|..+-+.+.+..++++|-.
T Consensus 111 AmaleKAak-------------------~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~ 171 (308)
T KOG1585|consen 111 AMALEKAAK-------------------ALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAAT 171 (308)
T ss_pred HHHHHHHHH-------------------HhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHHH
Confidence 333332221 12345566677766655421 1 01112334445566666677666655
Q ss_pred HHHHHHhC----CCCCC-HhhHHHHHHHHHHcCCHHHHHHHHHHHHHCC---CCcChhhHHHHHHHHHhcCCchHHHHHH
Q 036198 329 FLEEMGNK----GYPPD-IVTYNCFLKVLCDNKNGDEALRLYGRMIEVG---CWPSVQTYNMLISMYFELGEPDGAFETW 400 (499)
Q Consensus 329 ~~~~m~~~----~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~---~~~~~~~~~~li~~~~~~~~~~~a~~~~ 400 (499)
.+.+-... .--++ -..|...|-.+.-..++..|.+.++.-.+.+ -.-+..+...|+.+|- .|+.+.+.+++
T Consensus 172 a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ayd-~gD~E~~~kvl 250 (308)
T KOG1585|consen 172 AFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAYD-EGDIEEIKKVL 250 (308)
T ss_pred HHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHhc-cCCHHHHHHHH
Confidence 44332111 11112 2345555666666778888888887755432 1134567777777764 56666665554
Q ss_pred H
Q 036198 401 H 401 (499)
Q Consensus 401 ~ 401 (499)
.
T Consensus 251 ~ 251 (308)
T KOG1585|consen 251 S 251 (308)
T ss_pred c
Confidence 3
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=92.88 E-value=3.8 Score=37.53 Aligned_cols=116 Identities=13% Similarity=-0.079 Sum_probs=53.5
Q ss_pred cCCHhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-C--CCcCHHhHHHHHHHHHhcCCH
Q 036198 247 ARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINS-G--CLPDVSTYKEVLEGMCLAGKV 323 (499)
Q Consensus 247 ~g~~~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~-~--~~~~~~~~~~ll~~~~~~g~~ 323 (499)
.|+..+|-..++++.+.- +.|..++...-.+|.-.|+.+.....++++... + ++.....-....-++...|-+
T Consensus 116 ~g~~h~a~~~wdklL~d~----PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y 191 (491)
T KOG2610|consen 116 RGKHHEAAIEWDKLLDDY----PTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIY 191 (491)
T ss_pred cccccHHHHHHHHHHHhC----chhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccc
Confidence 345555555555555542 344555555555555555555555555555432 1 111111112222233345555
Q ss_pred HHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHH
Q 036198 324 EEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGR 367 (499)
Q Consensus 324 ~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 367 (499)
++|++.-++..+.+. .|...-.++...+--.|+..++.+...+
T Consensus 192 ~dAEk~A~ralqiN~-~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ 234 (491)
T KOG2610|consen 192 DDAEKQADRALQINR-FDCWASHAKAHVLEMNGRHKEGKEFMYK 234 (491)
T ss_pred hhHHHHHHhhccCCC-cchHHHHHHHHHHHhcchhhhHHHHHHh
Confidence 555555555544432 2444444455555555555555554443
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=92.65 E-value=3.9 Score=31.85 Aligned_cols=91 Identities=15% Similarity=0.115 Sum_probs=44.0
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCcChhhHHHHHHHHHhcCCchHHHHHHHHHhHC-CCCCC--HHHHHHHHHHHHhCCC
Q 036198 351 VLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKR-GCAQD--VDTYCVMIDGLFDCSK 427 (499)
Q Consensus 351 ~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-~~~p~--~~~~~~li~~~~~~g~ 427 (499)
+.+..|+.+.|++.|.+....- +-....||.-..++.-.|+.++|++=+++..+. |-+.. ...|..--..|...|+
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~-P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~ 130 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLA-PERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGN 130 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhc-ccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCc
Confidence 3445566666666666555431 234455666666666666666666555555443 11111 1112222223344555
Q ss_pred HHHHHHHHHHHHHCC
Q 036198 428 VEEACFLLEEVVNKG 442 (499)
Q Consensus 428 ~~~a~~~~~~m~~~~ 442 (499)
-+.|..=|+..-..|
T Consensus 131 dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 131 DDAARADFEAAAQLG 145 (175)
T ss_pred hHHHHHhHHHHHHhC
Confidence 555555555555554
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=92.63 E-value=4.5 Score=36.57 Aligned_cols=78 Identities=10% Similarity=0.043 Sum_probs=59.1
Q ss_pred HHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----cCCCcCHHh
Q 036198 235 FTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMIN-----SGCLPDVST 309 (499)
Q Consensus 235 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~-----~~~~~~~~~ 309 (499)
.++..++..+...|+.+.+...++++.... +-+...|..+|.+|.+.|+...|...|+++.+ .|+.|...+
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~d----p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~ 229 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELD----PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPEL 229 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcC----ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHH
Confidence 356677788888888888888888888775 56778888888888888888888888887765 467776666
Q ss_pred HHHHHHH
Q 036198 310 YKEVLEG 316 (499)
Q Consensus 310 ~~~ll~~ 316 (499)
.......
T Consensus 230 ~~~y~~~ 236 (280)
T COG3629 230 RALYEEI 236 (280)
T ss_pred HHHHHHH
Confidence 6555444
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=92.32 E-value=9.5 Score=35.47 Aligned_cols=228 Identities=12% Similarity=0.036 Sum_probs=116.0
Q ss_pred hcCCHhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCC---cCHHhHHHHHHHHHhc
Q 036198 246 KARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINS--GCL---PDVSTYKEVLEGMCLA 320 (499)
Q Consensus 246 ~~g~~~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~--~~~---~~~~~~~~ll~~~~~~ 320 (499)
...+.++|+..+..-..+-.+ ..--..++..+..+.++.|.+++++..--.-.+. ... .--..|..+-+++-+.
T Consensus 18 ~s~~~~~al~~w~~~L~~l~~-~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~l 96 (518)
T KOG1941|consen 18 QSNQTEKALQVWTKVLEKLSD-LMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEKL 96 (518)
T ss_pred cCchHHHHHHHHHHHHHHHHH-HHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666666555443211 1112345556666667777766655432211110 001 1123344444555554
Q ss_pred CCHHHHHHHHHHHHhC-CCCCC---HhhHHHHHHHHHHcCCHHHHHHHHHHHHHCC-----CCcChhhHHHHHHHHHhcC
Q 036198 321 GKVEEAYKFLEEMGNK-GYPPD---IVTYNCFLKVLCDNKNGDEALRLYGRMIEVG-----CWPSVQTYNMLISMYFELG 391 (499)
Q Consensus 321 g~~~~a~~~~~~m~~~-~~~p~---~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~-----~~~~~~~~~~li~~~~~~~ 391 (499)
-++.+++.+-..-... |..|. -....++-.++.-.+.++++++.|+...+.- ......+|..|-..|.+..
T Consensus 97 ~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~ 176 (518)
T KOG1941|consen 97 CEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLK 176 (518)
T ss_pred HHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHH
Confidence 4555555444332222 22221 1223345556666677788888877765421 1123457777888888888
Q ss_pred CchHHHHHHHHHhH----CCCCCCHHHHHH-----HHHHHHhCCCHHHHHHHHHHHHH----CCCCCC-HHHHHHHHHHH
Q 036198 392 EPDGAFETWHEMDK----RGCAQDVDTYCV-----MIDGLFDCSKVEEACFLLEEVVN----KGLKLP-YRKFDSYLMQL 457 (499)
Q Consensus 392 ~~~~a~~~~~~m~~----~~~~p~~~~~~~-----li~~~~~~g~~~~a~~~~~~m~~----~~~~p~-~~~~~~ll~~~ 457 (499)
++++|.-+.....+ .++.--...|.. |.-++...|+.-.|.+..++..+ .|-.+. ......+.+.|
T Consensus 177 D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIy 256 (518)
T KOG1941|consen 177 DYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIY 256 (518)
T ss_pred hhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHH
Confidence 88887776665433 222211122222 33345566776666666665443 342211 23344556777
Q ss_pred HhcCCHHHHHHHHHHHH
Q 036198 458 SVIGDLGAIHKLSDHMR 474 (499)
Q Consensus 458 ~~~g~~~~a~~~~~~m~ 474 (499)
...|+.+.|+.-++...
T Consensus 257 R~~gd~e~af~rYe~Am 273 (518)
T KOG1941|consen 257 RSRGDLERAFRRYEQAM 273 (518)
T ss_pred HhcccHhHHHHHHHHHH
Confidence 77888887776665543
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.32 E-value=6.8 Score=33.82 Aligned_cols=229 Identities=18% Similarity=0.112 Sum_probs=131.9
Q ss_pred cCCHhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCCcCHHhHHHHHHHHHhcCCHHH
Q 036198 247 ARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINS-GCLPDVSTYKEVLEGMCLAGKVEE 325 (499)
Q Consensus 247 ~g~~~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~-~~~~~~~~~~~ll~~~~~~g~~~~ 325 (499)
.+....+...+......... ......+......+...+.+..+...+...... ........+......+...+....
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (291)
T COG0457 36 LGELAEALELLEEALELLPN--SDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEE 113 (291)
T ss_pred HhhHHHHHHHHHHHHhcCcc--ccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHH
Confidence 34555555555555554310 012456666666777777777777777666542 223445555566666666677777
Q ss_pred HHHHHHHHHhCCCCCCHhhHHHHHH-HHHHcCCHHHHHHHHHHHHHCCC--CcChhhHHHHHHHHHhcCCchHHHHHHHH
Q 036198 326 AYKFLEEMGNKGYPPDIVTYNCFLK-VLCDNKNGDEALRLYGRMIEVGC--WPSVQTYNMLISMYFELGEPDGAFETWHE 402 (499)
Q Consensus 326 a~~~~~~m~~~~~~p~~~~~~~li~-~~~~~g~~~~a~~~~~~m~~~~~--~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 402 (499)
+.+.+.........+ ......... .+...|+++.|...+.+...... ......+......+...++.+.+...+..
T Consensus 114 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 192 (291)
T COG0457 114 ALELLEKALALDPDP-DLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEK 192 (291)
T ss_pred HHHHHHHHHcCCCCc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHH
Confidence 777777766543332 112222222 56677777777777777754221 11233333444445666777777777777
Q ss_pred HhHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCh
Q 036198 403 MDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHMRKFYNP 479 (499)
Q Consensus 403 m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~ 479 (499)
............+..+-..+...++++.|...+......... ....+..+...+...|..+.+...+.+..+..+.
T Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 193 ALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPD-NAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred HHhhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcc-cHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 766421113456666666777777777777777777665422 2344444444455666677777777777666553
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=92.24 E-value=3.6 Score=38.76 Aligned_cols=106 Identities=9% Similarity=-0.096 Sum_probs=52.5
Q ss_pred HHHHHHhcCCHhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHh
Q 036198 240 AIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCL 319 (499)
Q Consensus 240 li~~~~~~g~~~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~ 319 (499)
-.+.|.+.|++..|..-|++....-. |.+.-+.++..... ..-..++..+.-+|.+
T Consensus 214 ~Gn~~fK~gk~~~A~~~Yerav~~l~----------------~~~~~~~ee~~~~~--------~~k~~~~lNlA~c~lK 269 (397)
T KOG0543|consen 214 RGNVLFKEGKFKLAKKRYERAVSFLE----------------YRRSFDEEEQKKAE--------ALKLACHLNLAACYLK 269 (397)
T ss_pred hhhHHHhhchHHHHHHHHHHHHHHhh----------------ccccCCHHHHHHHH--------HHHHHHhhHHHHHHHh
Confidence 34568889999999999888654210 00000001110000 0112234445555555
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 036198 320 AGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIE 370 (499)
Q Consensus 320 ~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 370 (499)
.+++.+|++.-...+..+. +|....-.=..++...|+++.|+..|+.+.+
T Consensus 270 l~~~~~Ai~~c~kvLe~~~-~N~KALyRrG~A~l~~~e~~~A~~df~ka~k 319 (397)
T KOG0543|consen 270 LKEYKEAIESCNKVLELDP-NNVKALYRRGQALLALGEYDLARDDFQKALK 319 (397)
T ss_pred hhhHHHHHHHHHHHHhcCC-CchhHHHHHHHHHHhhccHHHHHHHHHHHHH
Confidence 5555555555555554432 2444444444555555555555555555555
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=92.05 E-value=12 Score=36.00 Aligned_cols=270 Identities=9% Similarity=0.076 Sum_probs=142.0
Q ss_pred HHHhCCChHHHHHHHHHhhcCCCCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCC
Q 036198 186 ALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGS 265 (499)
Q Consensus 186 ~~~~~g~~~~A~~~~~~m~~~~~p~~~~~~~la~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~ 265 (499)
.+-+.+++.+|.++|.++.+....+.+.+. ....-+.++++|.- .+.+..........+..
T Consensus 15 ~Lqkq~~~~esEkifskI~~e~~~~~f~lk-----------------eEvl~grilnAffl-~nld~Me~~l~~l~~~~- 75 (549)
T PF07079_consen 15 ILQKQKKFQESEKIFSKIYDEKESSPFLLK-----------------EEVLGGRILNAFFL-NNLDLMEKQLMELRQQF- 75 (549)
T ss_pred HHHHHhhhhHHHHHHHHHHHHhhcchHHHH-----------------HHHHhhHHHHHHHH-hhHHHHHHHHHHHHHhc-
Confidence 345789999999999998654222222211 12223455566553 34455555555554432
Q ss_pred CCCCCCHHHHHHHHHH--HHHcCCHHHHHHHHHHHHHc--CCCc------------CHHhHHHHHHHHHhcCCHHHHHHH
Q 036198 266 TISSPTAKTYAIMIVA--LVQNDRMEECFSLLGHMINS--GCLP------------DVSTYKEVLEGMCLAGKVEEAYKF 329 (499)
Q Consensus 266 ~~~~p~~~~~~~ll~~--~~~~~~~~~a~~~~~~m~~~--~~~~------------~~~~~~~ll~~~~~~g~~~~a~~~ 329 (499)
| ...|-.+..+ +-+.+++.+|.+.+....+. +..| |-..=+..++++...|++.++..+
T Consensus 76 ----~-~s~~l~LF~~L~~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~i 150 (549)
T PF07079_consen 76 ----G-KSAYLPLFKALVAYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAI 150 (549)
T ss_pred ----C-CchHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHH
Confidence 2 2233333333 23566777777777666544 2221 111124456677778888888877
Q ss_pred HHHHHhC----CCCCCHhhHHHHHHHHHHcC--------C-------HHHHHHHHHHHHHC------CCCcChhhHHHHH
Q 036198 330 LEEMGNK----GYPPDIVTYNCFLKVLCDNK--------N-------GDEALRLYGRMIEV------GCWPSVQTYNMLI 384 (499)
Q Consensus 330 ~~~m~~~----~~~p~~~~~~~li~~~~~~g--------~-------~~~a~~~~~~m~~~------~~~~~~~~~~~li 384 (499)
++++... ....+..+|+.++-.+.++= . ++.+.-..++|... .+.|-...+..++
T Consensus 151 Ln~i~~~llkrE~~w~~d~yd~~vlmlsrSYfLEl~e~~s~dl~pdyYemilfY~kki~~~d~~~Y~k~~peeeL~s~im 230 (549)
T PF07079_consen 151 LNRIIERLLKRECEWNSDMYDRAVLMLSRSYFLELKESMSSDLYPDYYEMILFYLKKIHAFDQRPYEKFIPEEELFSTIM 230 (549)
T ss_pred HHHHHHHHhhhhhcccHHHHHHHHHHHhHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHhhchHHhhCcHHHHHHHHH
Confidence 7776554 23367777777555444321 1 12222222233211 2334445555555
Q ss_pred HHHHhcC--CchHHHHHHHHHhHCCCCCCHH-HHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCC----CHHHHHHHHHHH
Q 036198 385 SMYFELG--EPDGAFETWHEMDKRGCAQDVD-TYCVMIDGLFDCSKVEEACFLLEEVVNKGLKL----PYRKFDSYLMQL 457 (499)
Q Consensus 385 ~~~~~~~--~~~~a~~~~~~m~~~~~~p~~~-~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p----~~~~~~~ll~~~ 457 (499)
....-.. ...--.+++..-...-+.|+.. ....++..+.+ +.+++..+.+.+....+.+ =..+|..++...
T Consensus 231 qhlfi~p~e~l~~~mq~l~~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~ 308 (549)
T PF07079_consen 231 QHLFIVPKERLPPLMQILENWENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFK 308 (549)
T ss_pred HHHHhCCHhhccHHHHHHHHHHhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 5443321 2222233333333334556543 23344444444 4566665555544332211 245788889999
Q ss_pred HhcCCHHHHHHHHHHHHhhcChhH
Q 036198 458 SVIGDLGAIHKLSDHMRKFYNPVI 481 (499)
Q Consensus 458 ~~~g~~~~a~~~~~~m~~~~~~~~ 481 (499)
.+.++..+|.+.+.-+.-..|...
T Consensus 309 Vk~~~T~~a~q~l~lL~~ldp~~s 332 (549)
T PF07079_consen 309 VKQVQTEEAKQYLALLKILDPRIS 332 (549)
T ss_pred HHHHhHHHHHHHHHHHHhcCCcch
Confidence 999999999999988877665544
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=91.85 E-value=5.6 Score=31.79 Aligned_cols=83 Identities=12% Similarity=0.070 Sum_probs=52.3
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHH
Q 036198 239 TAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMC 318 (499)
Q Consensus 239 ~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~ 318 (499)
.-.....+.|++++|.+.|+.+..+-.. .+-...+--.++.+|.+.+++++|...+++.++..-.-...-|...+.+++
T Consensus 15 ~~a~~~l~~~~Y~~A~~~le~L~~ryP~-g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~ 93 (142)
T PF13512_consen 15 QEAQEALQKGNYEEAIKQLEALDTRYPF-GEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLS 93 (142)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHhcCCC-CcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHH
Confidence 3344455678888888888888776432 223345566677788888888888888888777643222345555566655
Q ss_pred hcCC
Q 036198 319 LAGK 322 (499)
Q Consensus 319 ~~g~ 322 (499)
....
T Consensus 94 ~~~~ 97 (142)
T PF13512_consen 94 YYEQ 97 (142)
T ss_pred HHHH
Confidence 4443
|
|
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=91.84 E-value=6.5 Score=32.51 Aligned_cols=27 Identities=15% Similarity=0.327 Sum_probs=11.8
Q ss_pred HHHHhCCCCCCHhhHHHHHHHHHHcCC
Q 036198 331 EEMGNKGYPPDIVTYNCFLKVLCDNKN 357 (499)
Q Consensus 331 ~~m~~~~~~p~~~~~~~li~~~~~~g~ 357 (499)
+.+.+.+++|+...|..++..+.+.|+
T Consensus 18 rSl~~~~i~~~~~L~~lli~lLi~~~~ 44 (167)
T PF07035_consen 18 RSLNQHNIPVQHELYELLIDLLIRNGQ 44 (167)
T ss_pred HHHHHcCCCCCHHHHHHHHHHHHHcCC
Confidence 333344444444444444444444444
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=91.83 E-value=0.45 Score=29.20 Aligned_cols=37 Identities=22% Similarity=0.185 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHhCCChHHHHHHHHHhhcCCCCChhhH
Q 036198 178 NALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTY 214 (499)
Q Consensus 178 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~~~ 214 (499)
.++..+...|.+.|++++|.++|++..+..|.|...|
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~ 38 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAW 38 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHH
Confidence 3677889999999999999999999987655444444
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=91.67 E-value=3.2 Score=34.96 Aligned_cols=65 Identities=11% Similarity=0.111 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 036198 235 FTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMIN 300 (499)
Q Consensus 235 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~ 300 (499)
..+..+...|++.|+.+.|.+.|.++.+.... ...-...+-.+|+.....+++..+.....+...
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~-~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~ 101 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTS-PGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAES 101 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCC-HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 45667788888888888888888888776521 122245566777777888888887777766654
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=91.54 E-value=2.4 Score=38.22 Aligned_cols=62 Identities=16% Similarity=0.258 Sum_probs=30.2
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHH
Q 036198 307 VSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMI 369 (499)
Q Consensus 307 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 369 (499)
..++..++..+...|+.+.+.+.++++...... +...|..++.+|.+.|+...|+..|+.+.
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~-~E~~~~~lm~~y~~~g~~~~ai~~y~~l~ 214 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELDPY-DEPAYLRLMEAYLVNGRQSAAIRAYRQLK 214 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHcCCchHHHHHHHHHH
Confidence 334444455555555555555555555444322 44445555555555555555555554443
|
|
| >COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown] | Back alignment and domain information |
|---|
Probab=91.42 E-value=15 Score=35.91 Aligned_cols=177 Identities=11% Similarity=0.007 Sum_probs=106.8
Q ss_pred CcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcChhhHHHH
Q 036198 304 LPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNML 383 (499)
Q Consensus 304 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l 383 (499)
..|....-+++..+..+-.+.-++.+-.+|...| -+...|..++..|... ..+.-..+++++.+..+ +......-
T Consensus 63 ~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~df--nDvv~~Re 137 (711)
T COG1747 63 LLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDF--NDVVIGRE 137 (711)
T ss_pred cccchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcc--hhHHHHHH
Confidence 4455566667777777777777777777777654 3566777777777666 55667777777776543 33333333
Q ss_pred HHHHHhcCCchHHHHHHHHHhHCCCC-----CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH-CCCCCCHHHHHHHHHHH
Q 036198 384 ISMYFELGEPDGAFETWHEMDKRGCA-----QDVDTYCVMIDGLFDCSKVEEACFLLEEVVN-KGLKLPYRKFDSYLMQL 457 (499)
Q Consensus 384 i~~~~~~~~~~~a~~~~~~m~~~~~~-----p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-~~~~p~~~~~~~ll~~~ 457 (499)
+..+...++.+.+..+|..+...-++ .-...|..++.. -..+.+....+..+... .|...-...+.-+..-|
T Consensus 138 La~~yEkik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~--i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Y 215 (711)
T COG1747 138 LADKYEKIKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPEL--IGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKY 215 (711)
T ss_pred HHHHHHHhchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHh--ccccHHHHHHHHHHHHHhhccchHHHHHHHHHHHh
Confidence 33333347777777777766543111 011234444442 13456666666666653 34444556666666777
Q ss_pred HhcCCHHHHHHHHHHHHhhcChhHHHHHHH
Q 036198 458 SVIGDLGAIHKLSDHMRKFYNPVIARRLAL 487 (499)
Q Consensus 458 ~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ 487 (499)
....++++|.+++..+.+...+..+.+-.+
T Consensus 216 s~~eN~~eai~Ilk~il~~d~k~~~ar~~~ 245 (711)
T COG1747 216 SENENWTEAIRILKHILEHDEKDVWARKEI 245 (711)
T ss_pred ccccCHHHHHHHHHHHhhhcchhhhHHHHH
Confidence 777888888888887777666665544433
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=91.30 E-value=15 Score=36.11 Aligned_cols=134 Identities=16% Similarity=0.132 Sum_probs=86.9
Q ss_pred HHHHHHHHHHHhcchhhhhhHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhCCChH
Q 036198 115 PLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLMILKQYTEKIKVKTQPEINALNLLLDALCKCGLVD 194 (499)
Q Consensus 115 ~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 194 (499)
..-.+.+++-+- +.|..+.|+++..+- ..-.+...+.|+++
T Consensus 295 ~~~~~~i~~fL~----~~G~~e~AL~~~~D~-----------------------------------~~rFeLAl~lg~L~ 335 (443)
T PF04053_consen 295 KDQGQSIARFLE----KKGYPELALQFVTDP-----------------------------------DHRFELALQLGNLD 335 (443)
T ss_dssp HHHHHHHHHHHH----HTT-HHHHHHHSS-H-----------------------------------HHHHHHHHHCT-HH
T ss_pred hhHHHHHHHHHH----HCCCHHHHHhhcCCh-----------------------------------HHHhHHHHhcCCHH
Confidence 445777777777 888888888874332 12334566778888
Q ss_pred HHHHHHHHhhcCCCCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCCCCHHH
Q 036198 195 YAETICKRVKNKVKPNANTYNILGMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKT 274 (499)
Q Consensus 195 ~A~~~~~~m~~~~~p~~~~~~~la~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~p~~~~ 274 (499)
.|.++-++. .+...|..|.....+.|+++-|++.|.+.. -
T Consensus 336 ~A~~~a~~~----------------------------~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~------------d 375 (443)
T PF04053_consen 336 IALEIAKEL----------------------------DDPEKWKQLGDEALRQGNIELAEECYQKAK------------D 375 (443)
T ss_dssp HHHHHCCCC----------------------------STHHHHHHHHHHHHHTTBHHHHHHHHHHCT-------------
T ss_pred HHHHHHHhc----------------------------CcHHHHHHHHHHHHHcCCHHHHHHHHHhhc------------C
Confidence 887764332 366678888888888888888888887543 2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHH
Q 036198 275 YAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEM 333 (499)
Q Consensus 275 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m 333 (499)
|..++-.|.-.|+.+...++.+.....|- ++....++.-.|+.++..+++.+-
T Consensus 376 ~~~L~lLy~~~g~~~~L~kl~~~a~~~~~------~n~af~~~~~lgd~~~cv~lL~~~ 428 (443)
T PF04053_consen 376 FSGLLLLYSSTGDREKLSKLAKIAEERGD------INIAFQAALLLGDVEECVDLLIET 428 (443)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHHTT-------HHHHHHHHHHHT-HHHHHHHHHHT
T ss_pred ccccHHHHHHhCCHHHHHHHHHHHHHccC------HHHHHHHHHHcCCHHHHHHHHHHc
Confidence 45566677777887777777777776662 444555566667777777666543
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=91.20 E-value=15 Score=35.59 Aligned_cols=116 Identities=16% Similarity=0.100 Sum_probs=79.7
Q ss_pred CCHhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcC-HHhHHHHHHHHHhcCCHHHH
Q 036198 248 RMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPD-VSTYKEVLEGMCLAGKVEEA 326 (499)
Q Consensus 248 g~~~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~ll~~~~~~g~~~~a 326 (499)
....+|.++-++..+.+ +-|..+...+..+....++.+.|..+|++....+ || ..+|...--.+.-.|+.++|
T Consensus 318 ~~~~~a~~~A~rAveld----~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~--Pn~A~~~~~~~~~~~~~G~~~~a 391 (458)
T PRK11906 318 LAAQKALELLDYVSDIT----TVDGKILAIMGLITGLSGQAKVSHILFEQAKIHS--TDIASLYYYRALVHFHNEKIEEA 391 (458)
T ss_pred HHHHHHHHHHHHHHhcC----CCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcC--CccHHHHHHHHHHHHHcCCHHHH
Confidence 34567888888888876 5577888788887788888999999999998874 44 44555555566778999999
Q ss_pred HHHHHHHHhCCCC-CCHhhHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 036198 327 YKFLEEMGNKGYP-PDIVTYNCFLKVLCDNKNGDEALRLYGRMIE 370 (499)
Q Consensus 327 ~~~~~~m~~~~~~-p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 370 (499)
.+.+++..+.... .-.......+..|+. ...+.|.++|.+-.+
T Consensus 392 ~~~i~~alrLsP~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 435 (458)
T PRK11906 392 RICIDKSLQLEPRRRKAVVIKECVDMYVP-NPLKNNIKLYYKETE 435 (458)
T ss_pred HHHHHHHhccCchhhHHHHHHHHHHHHcC-CchhhhHHHHhhccc
Confidence 9999996665321 112223333445554 456777777765443
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=91.17 E-value=9.9 Score=33.34 Aligned_cols=206 Identities=17% Similarity=0.126 Sum_probs=97.6
Q ss_pred HHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHhHHHH
Q 036198 234 NFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEV 313 (499)
Q Consensus 234 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l 313 (499)
...|.....+|..+.++++|...+.+..+-. +-+...|.+ ...++.|.-+.++|.+. .--...|+..
T Consensus 31 as~yekAAvafRnAk~feKakdcLlkA~~~y----EnnrslfhA-------AKayEqaamLake~~kl--sEvvdl~eKA 97 (308)
T KOG1585|consen 31 ASLYEKAAVAFRNAKKFEKAKDCLLKASKGY----ENNRSLFHA-------AKAYEQAAMLAKELSKL--SEVVDLYEKA 97 (308)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHHH----HhcccHHHH-------HHHHHHHHHHHHHHHHh--HHHHHHHHHH
Confidence 3456667778888899999988777765421 112222211 22244555555555443 1123345555
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHH---CC--CCcChhhHHHHHHHHH
Q 036198 314 LEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIE---VG--CWPSVQTYNMLISMYF 388 (499)
Q Consensus 314 l~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~---~~--~~~~~~~~~~li~~~~ 388 (499)
...|..+|.++.|-..+++.-+. ...-++++|+++|++... .+ ...-...+...-..+.
T Consensus 98 s~lY~E~GspdtAAmaleKAak~----------------lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lV 161 (308)
T KOG1585|consen 98 SELYVECGSPDTAAMALEKAAKA----------------LENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLV 161 (308)
T ss_pred HHHHHHhCCcchHHHHHHHHHHH----------------hhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhh
Confidence 66677777666665555543221 122334444444444321 10 0011123333444455
Q ss_pred hcCCchHHHHHHHHHhHC----CCCCCH-HHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCCCCHHHHHHHHHHHHhc
Q 036198 389 ELGEPDGAFETWHEMDKR----GCAQDV-DTYCVMIDGLFDCSKVEEACFLLEEVVNK---GLKLPYRKFDSYLMQLSVI 460 (499)
Q Consensus 389 ~~~~~~~a~~~~~~m~~~----~~~p~~-~~~~~li~~~~~~g~~~~a~~~~~~m~~~---~~~p~~~~~~~ll~~~~~~ 460 (499)
+...+++|-..+.+-... .--++. ..|-..|-.+....++..|...+++--.. .-.-+..+...|+.+| ..
T Consensus 162 rl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~ 240 (308)
T KOG1585|consen 162 RLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DE 240 (308)
T ss_pred hhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-cc
Confidence 555555554444332110 011111 22344444455556666677666653222 1122455666666655 34
Q ss_pred CCHHHHHHH
Q 036198 461 GDLGAIHKL 469 (499)
Q Consensus 461 g~~~~a~~~ 469 (499)
||.+.+.++
T Consensus 241 gD~E~~~kv 249 (308)
T KOG1585|consen 241 GDIEEIKKV 249 (308)
T ss_pred CCHHHHHHH
Confidence 666655544
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=90.94 E-value=14 Score=34.77 Aligned_cols=232 Identities=12% Similarity=0.021 Sum_probs=114.2
Q ss_pred CCCHHHHHHHHHHH--HhcCCHhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHH
Q 036198 231 APDNFTYNTAIDTF--CKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVS 308 (499)
Q Consensus 231 ~p~~~~~~~li~~~--~~~g~~~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~ 308 (499)
..|..-.-.++.+- .-.|++++|.+-|+.|.... +--..-...|.-.--+.|+.+.|.++-+..-... +--..
T Consensus 115 ssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~dP----EtRllGLRgLyleAqr~GareaAr~yAe~Aa~~A-p~l~W 189 (531)
T COG3898 115 SSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDDP----ETRLLGLRGLYLEAQRLGAREAARHYAERAAEKA-PQLPW 189 (531)
T ss_pred hccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcCh----HHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhc-cCCch
Confidence 33444444444332 34567777777777765421 0011111222222234566666666665554432 22244
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCCHh--hHHHHHHHHHH---cCCHHHHHHHHHHHHHCCCCcChh-hHH
Q 036198 309 TYKEVLEGMCLAGKVEEAYKFLEEMGNKG-YPPDIV--TYNCFLKVLCD---NKNGDEALRLYGRMIEVGCWPSVQ-TYN 381 (499)
Q Consensus 309 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~~-~~p~~~--~~~~li~~~~~---~g~~~~a~~~~~~m~~~~~~~~~~-~~~ 381 (499)
.....+...|..|+|+.|+++++.-.... +.++.. .-..|+.+-.. ..+...|...-.+..+ +.||.. .--
T Consensus 190 A~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~K--L~pdlvPaav 267 (531)
T COG3898 190 AARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANK--LAPDLVPAAV 267 (531)
T ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhh--cCCccchHHH
Confidence 56667777777777777777776654432 223321 12222222211 1234444444433333 344433 223
Q ss_pred HHHHHHHhcCCchHHHHHHHHHhHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHh
Q 036198 382 MLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNK-GLKL-PYRKFDSYLMQLSV 459 (499)
Q Consensus 382 ~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-~~~p-~~~~~~~ll~~~~~ 459 (499)
.-..++.+.|+..++-.+++.+=+. .|....+...++ .+.|+ .+..-+++.... .++| +....-.+.++-..
T Consensus 268 ~AAralf~d~~~rKg~~ilE~aWK~--ePHP~ia~lY~~--ar~gd--ta~dRlkRa~~L~slk~nnaes~~~va~aAld 341 (531)
T COG3898 268 VAARALFRDGNLRKGSKILETAWKA--EPHPDIALLYVR--ARSGD--TALDRLKRAKKLESLKPNNAESSLAVAEAALD 341 (531)
T ss_pred HHHHHHHhccchhhhhhHHHHHHhc--CCChHHHHHHHH--hcCCC--cHHHHHHHHHHHHhcCccchHHHHHHHHHHHh
Confidence 3445677888888888888887665 344444433332 35554 233333322211 1223 35556666777777
Q ss_pred cCCHHHHHHHHHHHHh
Q 036198 460 IGDLGAIHKLSDHMRK 475 (499)
Q Consensus 460 ~g~~~~a~~~~~~m~~ 475 (499)
.|++..|..--+...+
T Consensus 342 a~e~~~ARa~Aeaa~r 357 (531)
T COG3898 342 AGEFSAARAKAEAAAR 357 (531)
T ss_pred ccchHHHHHHHHHHhh
Confidence 8887766655444443
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=90.61 E-value=13 Score=33.69 Aligned_cols=146 Identities=13% Similarity=0.146 Sum_probs=78.0
Q ss_pred HHHHhcCCHhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcC
Q 036198 242 DTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAG 321 (499)
Q Consensus 242 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g 321 (499)
......|++.+|..+|....... +-+...--.+..+|...|+.+.|..++..+...--.........-|..+.+..
T Consensus 142 ~~~~~~e~~~~a~~~~~~al~~~----~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa 217 (304)
T COG3118 142 KELIEAEDFGEAAPLLKQALQAA----PENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAA 217 (304)
T ss_pred hhhhhccchhhHHHHHHHHHHhC----cccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHh
Confidence 44566777777888777777664 23455666677777778888888877777654321122222222233333333
Q ss_pred CHHHHHHHHHHHHhCCCCC-CHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCC-CCcChhhHHHHHHHHHhcCCch
Q 036198 322 KVEEAYKFLEEMGNKGYPP-DIVTYNCFLKVLCDNKNGDEALRLYGRMIEVG-CWPSVQTYNMLISMYFELGEPD 394 (499)
Q Consensus 322 ~~~~a~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~-~~~~~~~~~~li~~~~~~~~~~ 394 (499)
...+...+-...-.. | |...-..+...+...|+.+.|.+.+-.+.+.. -.-|...-..++..+.--|..+
T Consensus 218 ~~~~~~~l~~~~aad---Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~~D 289 (304)
T COG3118 218 ATPEIQDLQRRLAAD---PDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGPAD 289 (304)
T ss_pred cCCCHHHHHHHHHhC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCCCC
Confidence 333333333333322 3 44444555566666777777766555554431 1233444455555555445333
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=90.56 E-value=7 Score=30.55 Aligned_cols=92 Identities=17% Similarity=0.068 Sum_probs=65.1
Q ss_pred HHHHhcCCHhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHhHHH---HHHHHH
Q 036198 242 DTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKE---VLEGMC 318 (499)
Q Consensus 242 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~---ll~~~~ 318 (499)
-+++..|+.+.|++.|.+....- +-....||.-..++.-.|+.++|++=+++..+..-.-+...... -...|-
T Consensus 51 valaE~g~Ld~AlE~F~qal~l~----P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyR 126 (175)
T KOG4555|consen 51 IALAEAGDLDGALELFGQALCLA----PERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYR 126 (175)
T ss_pred HHHHhccchHHHHHHHHHHHHhc----ccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHH
Confidence 45678889999999998887763 45678888888888888999988888888776532223333222 223455
Q ss_pred hcCCHHHHHHHHHHHHhCC
Q 036198 319 LAGKVEEAYKFLEEMGNKG 337 (499)
Q Consensus 319 ~~g~~~~a~~~~~~m~~~~ 337 (499)
..|+.+.|..=|+..-+.|
T Consensus 127 l~g~dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 127 LLGNDDAARADFEAAAQLG 145 (175)
T ss_pred HhCchHHHHHhHHHHHHhC
Confidence 6777888877777766655
|
|
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=90.32 E-value=3.7 Score=37.23 Aligned_cols=131 Identities=12% Similarity=0.059 Sum_probs=75.6
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHHHcCCC-------CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC---CCcCHH
Q 036198 239 TAIDTFCKARMVTEAADLFEFMRTKGST-------ISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSG---CLPDVS 308 (499)
Q Consensus 239 ~li~~~~~~g~~~~a~~~~~~m~~~~~~-------~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~---~~~~~~ 308 (499)
.|.++|.....|+.-....-.+-..|.. ..+.+..+...++..-....+++.+...+-.+.... ..|+..
T Consensus 24 ~LsS~fs~e~~w~~r~~~~~kla~~g~~~~kkF~~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~ 103 (418)
T KOG4570|consen 24 LLSSAFSDEHKWEAREKEHYKLADLGSLMDKKFERGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWT 103 (418)
T ss_pred hhHHHhhhhhhhhHHHHHHHHHhcccccchhhhhcCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhcccc
Confidence 3556666666666544444233322200 023334445555555555667777777777666431 122222
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 036198 309 TYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEV 371 (499)
Q Consensus 309 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 371 (499)
.+ ..++. +-.-++++++.++..=++.|+-||..+++.+|+.+.+.+++.+|.++.-.|...
T Consensus 104 ~~-~~irl-llky~pq~~i~~l~npIqYGiF~dqf~~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 104 IH-TWIRL-LLKYDPQKAIYTLVNPIQYGIFPDQFTFCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred HH-HHHHH-HHccChHHHHHHHhCcchhccccchhhHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 22 22222 333456677777777777788888888888888888888888877777666543
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=90.05 E-value=18 Score=34.43 Aligned_cols=165 Identities=15% Similarity=0.099 Sum_probs=104.0
Q ss_pred CCHHHHHHH-HHHHHhcCCHhHHHHHHHHHHHcCCCCCCCCHHHHHHHHH--HHHHcCCHHHHHHHHHHHHHcCCCcCHH
Q 036198 232 PDNFTYNTA-IDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIV--ALVQNDRMEECFSLLGHMINSGCLPDVS 308 (499)
Q Consensus 232 p~~~~~~~l-i~~~~~~g~~~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~--~~~~~~~~~~a~~~~~~m~~~~~~~~~~ 308 (499)
|.-.+|..+ ..++.-.|+.++|.++--...+.. ..+ .+...++ ++--.++.+.+...|++-+..+ |+-.
T Consensus 166 pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld----~~n--~~al~vrg~~~yy~~~~~ka~~hf~qal~ld--pdh~ 237 (486)
T KOG0550|consen 166 PACFKAKLLKAECLAFLGDYDEAQSEAIDILKLD----ATN--AEALYVRGLCLYYNDNADKAINHFQQALRLD--PDHQ 237 (486)
T ss_pred chhhHHHHhhhhhhhhcccchhHHHHHHHHHhcc----cch--hHHHHhcccccccccchHHHHHHHhhhhccC--hhhh
Confidence 333444333 245667788888888877777664 222 3333443 3344677888888888877653 4433
Q ss_pred hHHHH-------------HHHHHhcCCHHHHHHHHHHHHhC---CCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 036198 309 TYKEV-------------LEGMCLAGKVEEAYKFLEEMGNK---GYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVG 372 (499)
Q Consensus 309 ~~~~l-------------l~~~~~~g~~~~a~~~~~~m~~~---~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 372 (499)
.-..+ -+-..+.|.+..|.+.+.+.+.. +..|+...|-....+..+.|+.++|+.--++..+..
T Consensus 238 ~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD 317 (486)
T KOG0550|consen 238 KSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKID 317 (486)
T ss_pred hHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcC
Confidence 22221 13356788999999999887664 445566667777777888899999988888776632
Q ss_pred CCcC-hhhHHHHHHHHHhcCCchHHHHHHHHHhHC
Q 036198 373 CWPS-VQTYNMLISMYFELGEPDGAFETWHEMDKR 406 (499)
Q Consensus 373 ~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 406 (499)
+. ...|..-..++.-.++|++|.+-++...+.
T Consensus 318 --~syikall~ra~c~l~le~~e~AV~d~~~a~q~ 350 (486)
T KOG0550|consen 318 --SSYIKALLRRANCHLALEKWEEAVEDYEKAMQL 350 (486)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 11 112233334455667888888888877654
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=90.02 E-value=14 Score=33.37 Aligned_cols=141 Identities=12% Similarity=0.066 Sum_probs=75.4
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcChhhHHHHHHHHHhcCCchH
Q 036198 316 GMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDG 395 (499)
Q Consensus 316 ~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~ 395 (499)
.....|+..+|..+|+........ +...--.+..+|...|+.+.|..++..+-..--.........-|..+.+.....+
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~~~~-~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~ 221 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQAAPE-NSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPE 221 (304)
T ss_pred hhhhccchhhHHHHHHHHHHhCcc-cchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCC
Confidence 345566666666666666554322 2344555666666777777777777665432211122222233444444455554
Q ss_pred HHHHHHHHhHCCCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHhcC
Q 036198 396 AFETWHEMDKRGCAQ-DVDTYCVMIDGLFDCSKVEEACFLLEEVVNK--GLKLPYRKFDSYLMQLSVIG 461 (499)
Q Consensus 396 a~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--~~~p~~~~~~~ll~~~~~~g 461 (499)
...+-...... | |...--.+...+...|+.++|.+.+-.+..+ |.. |...-..++..+.--|
T Consensus 222 ~~~l~~~~aad---Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~-d~~~Rk~lle~f~~~g 286 (304)
T COG3118 222 IQDLQRRLAAD---PDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFE-DGEARKTLLELFEAFG 286 (304)
T ss_pred HHHHHHHHHhC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccc-CcHHHHHHHHHHHhcC
Confidence 45554444443 3 4455555666667777777777666555543 332 4445555555555444
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=89.96 E-value=0.63 Score=27.08 Aligned_cols=26 Identities=23% Similarity=0.051 Sum_probs=22.3
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHhh
Q 036198 179 ALNLLLDALCKCGLVDYAETICKRVK 204 (499)
Q Consensus 179 ~~~~li~~~~~~g~~~~A~~~~~~m~ 204 (499)
+|+.|.+.|.+.|++++|.++|++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 47889999999999999999999853
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=89.96 E-value=16 Score=33.71 Aligned_cols=152 Identities=11% Similarity=0.078 Sum_probs=78.3
Q ss_pred HhCCChHHHHHHHHHhhcCCCCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCC
Q 036198 188 CKCGLVDYAETICKRVKNKVKPNANTYNILGMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTI 267 (499)
Q Consensus 188 ~~~g~~~~A~~~~~~m~~~~~p~~~~~~~la~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~ 267 (499)
--.|++.+|-..++++.+..|. |...+.-.=++|...|..+.-...++++...-
T Consensus 114 ~~~g~~h~a~~~wdklL~d~Pt-----------------------Dlla~kfsh~a~fy~G~~~~~k~ai~kIip~w--- 167 (491)
T KOG2610|consen 114 WGRGKHHEAAIEWDKLLDDYPT-----------------------DLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKW--- 167 (491)
T ss_pred hccccccHHHHHHHHHHHhCch-----------------------hhhhhhhhhhHHHhccchhhhhhHHHHhcccc---
Confidence 3468888888888888765333 44444555555666666666666666655541
Q ss_pred CCCCHHHH----HHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhC---CCCC
Q 036198 268 SSPTAKTY----AIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNK---GYPP 340 (499)
Q Consensus 268 ~~p~~~~~----~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~---~~~p 340 (499)
.++...| ...--++...|-+++|++.-++..+.+ +.|...-.+..+.+--.|+..++.++..+-... +--.
T Consensus 168 -n~dlp~~sYv~GmyaFgL~E~g~y~dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~ml 245 (491)
T KOG2610|consen 168 -NADLPCYSYVHGMYAFGLEECGIYDDAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWML 245 (491)
T ss_pred -CCCCcHHHHHHHHHHhhHHHhccchhHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHH
Confidence 2222211 222223345566666666666655543 344555555555666666666666655432211 0000
Q ss_pred CHhhHHHHHHHHHHcCCHHHHHHHHHH
Q 036198 341 DIVTYNCFLKVLCDNKNGDEALRLYGR 367 (499)
Q Consensus 341 ~~~~~~~li~~~~~~g~~~~a~~~~~~ 367 (499)
-..-|-...-.+...+.++.|+.+|+.
T Consensus 246 asHNyWH~Al~~iE~aeye~aleIyD~ 272 (491)
T KOG2610|consen 246 ASHNYWHTALFHIEGAEYEKALEIYDR 272 (491)
T ss_pred HhhhhHHHHHhhhcccchhHHHHHHHH
Confidence 011122222233444666666666654
|
|
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=89.91 E-value=25 Score=35.91 Aligned_cols=181 Identities=13% Similarity=0.039 Sum_probs=82.5
Q ss_pred HhHHHHHHHHHHHcCCCCCCCCHHHHHHHHH----H-HHHcCCHHHHHHHHHHHHH-------cCCCcCHHhHHHHHHHH
Q 036198 250 VTEAADLFEFMRTKGSTISSPTAKTYAIMIV----A-LVQNDRMEECFSLLGHMIN-------SGCLPDVSTYKEVLEGM 317 (499)
Q Consensus 250 ~~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~----~-~~~~~~~~~a~~~~~~m~~-------~~~~~~~~~~~~ll~~~ 317 (499)
...|.++++...+.|. ...-..+.. + +....+.+.|+.+|....+ .| .......+-.+|
T Consensus 228 ~~~a~~~~~~~a~~g~------~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y 298 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLGH------SEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLY 298 (552)
T ss_pred hhHHHHHHHHHHhhcc------hHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHH
Confidence 4567777777777662 222222222 2 3345677777777777765 33 222344445555
Q ss_pred HhcC-----CHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHH-cCCHHHHHHHHHHHHHCCCCcChhhHHHHHHHHH--h
Q 036198 318 CLAG-----KVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCD-NKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYF--E 389 (499)
Q Consensus 318 ~~~g-----~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~-~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~--~ 389 (499)
.+.. +.+.|..++...-..|.+ +....-..+..... ..+...|.++|....+.|. +...-+.+++.... -
T Consensus 299 ~~g~~~~~~d~~~A~~~~~~aA~~g~~-~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~-~~A~~~la~~y~~G~gv 376 (552)
T KOG1550|consen 299 LQGLGVEKIDYEKALKLYTKAAELGNP-DAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGH-ILAIYRLALCYELGLGV 376 (552)
T ss_pred hcCCCCccccHHHHHHHHHHHHhcCCc-hHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCC-hHHHHHHHHHHHhCCCc
Confidence 4432 445566666665555432 33222222211111 1345566666666666553 12221211111111 1
Q ss_pred cCCchHHHHHHHHHhHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCC
Q 036198 390 LGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGL 443 (499)
Q Consensus 390 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~ 443 (499)
..+...|..++++..+.| .|...--...+..+.. ++.+.+.-.+..+.+.|.
T Consensus 377 ~r~~~~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g~ 428 (552)
T KOG1550|consen 377 ERNLELAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAELGY 428 (552)
T ss_pred CCCHHHHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhhh
Confidence 224555666666666555 2221111122222222 555555555555555543
|
|
| >PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1 | Back alignment and domain information |
|---|
Probab=89.89 E-value=6.3 Score=29.24 Aligned_cols=64 Identities=9% Similarity=0.134 Sum_probs=36.8
Q ss_pred HHHHHHHHHhCCCHH--HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcC
Q 036198 415 YCVMIDGLFDCSKVE--EACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHMRKFYN 478 (499)
Q Consensus 415 ~~~li~~~~~~g~~~--~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~ 478 (499)
|..--..|....+.+ +..+-++.+....+.|++....+.++||.+.+++..|.++++.++..-+
T Consensus 11 F~ary~~~F~~~~iD~we~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~ 76 (108)
T PF02284_consen 11 FDARYEKYFNRPDIDGWELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCG 76 (108)
T ss_dssp HHHHHHHHHH-TT--HHHHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhCCccccHHHHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcc
Confidence 333333444433333 4555566666667777888888888888888888888888877775433
|
9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R .... |
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=89.74 E-value=14 Score=32.76 Aligned_cols=81 Identities=17% Similarity=0.146 Sum_probs=57.6
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHH
Q 036198 236 TYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLE 315 (499)
Q Consensus 236 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~ 315 (499)
.|+. ...-.+.|++++|.+.|+.+..+... .+-...+--.++-++-+.++++.|...+++..+.--.-...-|..-|.
T Consensus 37 LY~~-g~~~L~~gn~~~A~~~fe~l~~~~p~-s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Ylk 114 (254)
T COG4105 37 LYNE-GLTELQKGNYEEAIKYFEALDSRHPF-SPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLK 114 (254)
T ss_pred HHHH-HHHHHhcCCHHHHHHHHHHHHHcCCC-CcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHH
Confidence 3444 34445789999999999999987543 234456677778888999999999999999987632223344555555
Q ss_pred HHH
Q 036198 316 GMC 318 (499)
Q Consensus 316 ~~~ 318 (499)
+++
T Consensus 115 gLs 117 (254)
T COG4105 115 GLS 117 (254)
T ss_pred HHH
Confidence 555
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=89.70 E-value=0.85 Score=26.49 Aligned_cols=24 Identities=13% Similarity=0.108 Sum_probs=14.3
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHH
Q 036198 237 YNTAIDTFCKARMVTEAADLFEFM 260 (499)
Q Consensus 237 ~~~li~~~~~~g~~~~a~~~~~~m 260 (499)
|..|...|.+.|++++|+++|++.
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~a 25 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQA 25 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHH
Confidence 455666666666666666666663
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=89.65 E-value=22 Score=34.85 Aligned_cols=101 Identities=14% Similarity=0.128 Sum_probs=67.5
Q ss_pred hHHHHHHHHHhcCCchHHHHHHHHHhHCC-CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHH
Q 036198 379 TYNMLISMYFELGEPDGAFETWHEMDKRG-CAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLP-YRKFDSYLMQ 456 (499)
Q Consensus 379 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~-~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~ll~~ 456 (499)
+-..+..++-+.|+.++|.+.+++|.+.. ..-+......|+.++...+++.++..++.+..+...+.+ ...|+..+-.
T Consensus 261 ~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALLk 340 (539)
T PF04184_consen 261 AKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAALLK 340 (539)
T ss_pred hHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHHH
Confidence 33556667778999999999999997642 222445677899999999999999999999865443222 3355555544
Q ss_pred HHhcCCH---------------HHHHHHHHHHHhhcCh
Q 036198 457 LSVIGDL---------------GAIHKLSDHMRKFYNP 479 (499)
Q Consensus 457 ~~~~g~~---------------~~a~~~~~~m~~~~~~ 479 (499)
+...|+. ..|.+.+.+..+.++-
T Consensus 341 aRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPH 378 (539)
T PF04184_consen 341 ARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPH 378 (539)
T ss_pred HHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCC
Confidence 3334431 2345666666665444
|
The molecular function of this protein is uncertain. |
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=89.61 E-value=26 Score=35.75 Aligned_cols=246 Identities=15% Similarity=0.077 Sum_probs=150.9
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHH--HH-HHhcCCHhHHHHHHHHHHH-------cCCCCCCCCHHHHHHHHHHHHHcC-
Q 036198 218 GMQTLEEMIQMGHAPDNFTYNTAI--DT-FCKARMVTEAADLFEFMRT-------KGSTISSPTAKTYAIMIVALVQND- 286 (499)
Q Consensus 218 a~~~~~~m~~~g~~p~~~~~~~li--~~-~~~~g~~~~a~~~~~~m~~-------~~~~~~~p~~~~~~~ll~~~~~~~- 286 (499)
+.++++...+.|.. ........+ .+ ++...+.+.|+.+|+...+ .+ ......-+..+|.+..
T Consensus 231 a~~~~~~~a~~g~~-~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~------~~~a~~~lg~~Y~~g~~ 303 (552)
T KOG1550|consen 231 AFKYYREAAKLGHS-EAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG------LPPAQYGLGRLYLQGLG 303 (552)
T ss_pred HHHHHHHHHhhcch-HHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc------CCccccHHHHHHhcCCC
Confidence 56666666666653 222222222 23 4567789999999999977 43 3346667777887743
Q ss_pred ----CHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHh-cCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHH--HcCCHH
Q 036198 287 ----RMEECFSLLGHMINSGCLPDVSTYKEVLEGMCL-AGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLC--DNKNGD 359 (499)
Q Consensus 287 ----~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~-~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~--~~g~~~ 359 (499)
+.+.|..++....+.| .|+...+-..+..... ..+...|.++|...-+.|.. ...-+.+++.... -..+.+
T Consensus 304 ~~~~d~~~A~~~~~~aA~~g-~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~-~A~~~la~~y~~G~gv~r~~~ 381 (552)
T KOG1550|consen 304 VEKIDYEKALKLYTKAAELG-NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHI-LAIYRLALCYELGLGVERNLE 381 (552)
T ss_pred CccccHHHHHHHHHHHHhcC-CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCCh-HHHHHHHHHHHhCCCcCCCHH
Confidence 6778999999998887 3455444333333333 35678999999999988854 2222222222222 344788
Q ss_pred HHHHHHHHHHHCCCCcChhhHHHHHHHHHhcCCchHHHHHHHHHhHCCCCCCHHHHHHHHHHH---Hh----CCCHHHHH
Q 036198 360 EALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGL---FD----CSKVEEAC 432 (499)
Q Consensus 360 ~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~---~~----~g~~~~a~ 432 (499)
.|..++++..+.| .|...--...+..+.. +..+.+.-.+..+.+.|.......-..++... .. ..+...+.
T Consensus 382 ~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g~~~~q~~a~~l~~~~~~~~~~~~~~~~~~~~~ 459 (552)
T KOG1550|consen 382 LAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAELGYEVAQSNAAYLLDQSEEDLFSRGVISTLERAF 459 (552)
T ss_pred HHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhhhhHHhhHHHHHHHhccccccccccccchhHHH
Confidence 9999999999988 3443333334444444 88888888888887776442211111111111 11 22566777
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhc----CCHHHHHHHHHHHHhhc
Q 036198 433 FLLEEVVNKGLKLPYRKFDSYLMQLSVI----GDLGAIHKLSDHMRKFY 477 (499)
Q Consensus 433 ~~~~~m~~~~~~p~~~~~~~ll~~~~~~----g~~~~a~~~~~~m~~~~ 477 (499)
.++......| +......+.+.|... .+.+.|...+...-...
T Consensus 460 ~~~~~a~~~g---~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~ 505 (552)
T KOG1550|consen 460 SLYSRAAAQG---NADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG 505 (552)
T ss_pred HHHHHHHhcc---CHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh
Confidence 7777777776 566666777777654 24667777777666554
|
|
| >PF13929 mRNA_stabil: mRNA stabilisation | Back alignment and domain information |
|---|
Probab=89.51 E-value=16 Score=33.09 Aligned_cols=62 Identities=11% Similarity=0.143 Sum_probs=32.4
Q ss_pred CcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCCHhhHHHHHHHHHHcCCHHHHHHHH
Q 036198 304 LPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNK-GYPPDIVTYNCFLKVLCDNKNGDEALRLY 365 (499)
Q Consensus 304 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~-~~~p~~~~~~~li~~~~~~g~~~~a~~~~ 365 (499)
.++..+...+++.+++.+++.+..++++..... +..-|...|..+|....+.|+..-..++.
T Consensus 199 ~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI 261 (292)
T PF13929_consen 199 SLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKII 261 (292)
T ss_pred CCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHh
Confidence 445555555555555555555555555554433 33445555555555555555544444333
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=89.48 E-value=3.6 Score=34.64 Aligned_cols=100 Identities=11% Similarity=0.044 Sum_probs=51.1
Q ss_pred hhHHHHHHHHHhcCCchHHHHHHHHHhHCCCCCC--HHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCCCCHHHHHH
Q 036198 378 QTYNMLISMYFELGEPDGAFETWHEMDKRGCAQD--VDTYCVMIDGLFDCSKVEEACFLLEEVVNK---GLKLPYRKFDS 452 (499)
Q Consensus 378 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~---~~~p~~~~~~~ 452 (499)
..+..+...|++.|+.+.|.+.+.++.+....+. ...+-.+|+...-.+++..+...+.+.... |-.++...--.
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 3555666666666666666666666665533322 234445556666666666666665554432 21112111111
Q ss_pred HHH--HHHhcCCHHHHHHHHHHHHhhc
Q 036198 453 YLM--QLSVIGDLGAIHKLSDHMRKFY 477 (499)
Q Consensus 453 ll~--~~~~~g~~~~a~~~~~~m~~~~ 477 (499)
... ++...+++..|-+.|-.....+
T Consensus 117 ~~~gL~~l~~r~f~~AA~~fl~~~~t~ 143 (177)
T PF10602_consen 117 VYEGLANLAQRDFKEAAELFLDSLSTF 143 (177)
T ss_pred HHHHHHHHHhchHHHHHHHHHccCcCC
Confidence 111 2344566776666665555444
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=89.46 E-value=1.6 Score=39.51 Aligned_cols=93 Identities=22% Similarity=0.239 Sum_probs=61.6
Q ss_pred CCCCCHHHHHHHHHHHHhCCChHHHHHHHHHhhcC----CCCChhhHHHH----------HHHHHHHHHHcCCCCCHHHH
Q 036198 172 KTQPEINALNLLLDALCKCGLVDYAETICKRVKNK----VKPNANTYNIL----------GMQTLEEMIQMGHAPDNFTY 237 (499)
Q Consensus 172 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~p~~~~~~~l----------a~~~~~~m~~~g~~p~~~~~ 237 (499)
|.+.+..+-..++..-....+++++...+-+++.. ..|+...+..+ ++-++..-++.|+-||..++
T Consensus 59 g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irlllky~pq~~i~~l~npIqYGiF~dqf~~ 138 (418)
T KOG4570|consen 59 GLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLLLKYDPQKAIYTLVNPIQYGIFPDQFTF 138 (418)
T ss_pred CCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHHHHccChHHHHHHHhCcchhccccchhhH
Confidence 34455555666666666677888888887777652 33444333333 55555666677888888888
Q ss_pred HHHHHHHHhcCCHhHHHHHHHHHHHcC
Q 036198 238 NTAIDTFCKARMVTEAADLFEFMRTKG 264 (499)
Q Consensus 238 ~~li~~~~~~g~~~~a~~~~~~m~~~~ 264 (499)
+.+|+.+.+.+++.+|.++.-.|..+.
T Consensus 139 c~l~D~flk~~n~~~aa~vvt~~~~qe 165 (418)
T KOG4570|consen 139 CLLMDSFLKKENYKDAASVVTEVMMQE 165 (418)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 888888888888887777776665543
|
|
| >PF13762 MNE1: Mitochondrial splicing apparatus component | Back alignment and domain information |
|---|
Probab=89.38 E-value=9.8 Score=30.54 Aligned_cols=109 Identities=8% Similarity=0.105 Sum_probs=55.3
Q ss_pred hhHHHHHHHHHHHHHHcCCCCCHH--HHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCC--CCCCHHHHHHHHHHHHHcCC
Q 036198 212 NTYNILGMQTLEEMIQMGHAPDNF--TYNTAIDTFCKARMVTEAADLFEFMRTKGSTI--SSPTAKTYAIMIVALVQNDR 287 (499)
Q Consensus 212 ~~~~~la~~~~~~m~~~g~~p~~~--~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~--~~p~~~~~~~ll~~~~~~~~ 287 (499)
.+|.....+....|.+.+..++.. ..|.++.-....+.+.....+++.+..-.... ...+...|++++.+.++..-
T Consensus 15 ~~w~~fi~~~~~y~~~~~~~~~~k~~fiN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsS 94 (145)
T PF13762_consen 15 EVWKTFINSHLPYMQEENASQSTKTIFINCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSS 94 (145)
T ss_pred HHHHHHHHHHHHHhhhcccChhHHHHHHHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChH
Confidence 333333444445555555555543 34666666666666666666666653211000 01233455566665544443
Q ss_pred -HHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhc
Q 036198 288 -MEECFSLLGHMINSGCLPDVSTYKEVLEGMCLA 320 (499)
Q Consensus 288 -~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~ 320 (499)
---+..+|+-|.+.+.+++..-|..++.++.+-
T Consensus 95 aK~~~~~Lf~~Lk~~~~~~t~~dy~~li~~~l~g 128 (145)
T PF13762_consen 95 AKLTSLTLFNFLKKNDIEFTPSDYSCLIKAALRG 128 (145)
T ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcC
Confidence 334455555555555555566666666555443
|
|
| >cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va | Back alignment and domain information |
|---|
Probab=89.16 E-value=3.4 Score=30.24 Aligned_cols=49 Identities=10% Similarity=0.055 Sum_probs=37.9
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 036198 427 KVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHMRK 475 (499)
Q Consensus 427 ~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~ 475 (499)
+.=++.+-++.+....+.|++....+.++||.+.+|+..|.++++.++.
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~ 70 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKD 70 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 3445666677777777788888888888888888888888888887773
|
Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios. |
| >cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va | Back alignment and domain information |
|---|
Probab=89.08 E-value=4.5 Score=29.62 Aligned_cols=61 Identities=16% Similarity=0.203 Sum_probs=46.8
Q ss_pred cCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHhhcCCCCChhhHHHHHHHHHHHHHHcCCC
Q 036198 171 VKTQPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQTLEEMIQMGHA 231 (499)
Q Consensus 171 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~~~~~la~~~~~~m~~~g~~ 231 (499)
..+.|+..+..+.+++|-+.+++.-|.++|+-++.++..+...|..+..++=--+.+.|+.
T Consensus 36 ~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~~~~~y~~~lqeikp~l~ELGI~ 96 (103)
T cd00923 36 YDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCGAHKEIYPYILQEIKPTLKELGIS 96 (103)
T ss_pred cccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccCchhhHHHHHHHHhHHHHHHCCC
Confidence 3578999999999999999999999999999998765555556666655555555555553
|
Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios. |
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=88.89 E-value=0.81 Score=25.61 Aligned_cols=30 Identities=13% Similarity=0.089 Sum_probs=23.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhhcCh
Q 036198 450 FDSYLMQLSVIGDLGAIHKLSDHMRKFYNP 479 (499)
Q Consensus 450 ~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~ 479 (499)
+-.+..++.+.|++++|.+.++++.+.+|.
T Consensus 3 ~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 3 LYRLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 335567778888899999998888888775
|
|
| >PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1 | Back alignment and domain information |
|---|
Probab=88.76 E-value=4.3 Score=30.07 Aligned_cols=62 Identities=16% Similarity=0.171 Sum_probs=42.2
Q ss_pred hhcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHhhcCCCCChhhHHHHHHHHHHHHHHcCC
Q 036198 169 IKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQTLEEMIQMGH 230 (499)
Q Consensus 169 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~~~~~la~~~~~~m~~~g~ 230 (499)
....+.|+..+..+.+++|-+.+++..|.++|+-++.++.+....|..+..++=--+.+.|+
T Consensus 37 ~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~~~~~Y~~~lqElkPtl~ELGI 98 (108)
T PF02284_consen 37 FGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGNKKEIYPYILQELKPTLEELGI 98 (108)
T ss_dssp TTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT-TTHHHHHHHHHHHHHHHHT-
T ss_pred hccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccChHHHHHHHHHHHhhHHHHhCC
Confidence 44567899999999999999999999999999999886555554666554444444444555
|
9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R .... |
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=88.49 E-value=15 Score=31.55 Aligned_cols=204 Identities=17% Similarity=0.074 Sum_probs=149.2
Q ss_pred CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHc-CCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHhHH
Q 036198 233 DNFTYNTAIDTFCKARMVTEAADLFEFMRTK-GSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYK 311 (499)
Q Consensus 233 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~ 311 (499)
....+......+...+.+..+...+...... . .......+......+...+.+..+...+.........+ .....
T Consensus 58 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 133 (291)
T COG0457 58 LAGLLLLLALALLKLGRLEEALELLEKALELEL---LPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDP-DLAEA 133 (291)
T ss_pred chHHHHHHHHHHHHcccHHHHHHHHHHHHhhhh---ccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCc-chHHH
Confidence 3567778888899999999999999888753 1 34566777788888888888999999999988764333 22222
Q ss_pred HHHH-HHHhcCCHHHHHHHHHHHHhCCC--CCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcChhhHHHHHHHHH
Q 036198 312 EVLE-GMCLAGKVEEAYKFLEEMGNKGY--PPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYF 388 (499)
Q Consensus 312 ~ll~-~~~~~g~~~~a~~~~~~m~~~~~--~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~ 388 (499)
.... .+...|+++.|...+........ ......+......+...++.+.+...+..............+..+...+.
T Consensus 134 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (291)
T COG0457 134 LLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYL 213 (291)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHH
Confidence 2333 78999999999999999855321 12334444445556778999999999999887542114677888888889
Q ss_pred hcCCchHHHHHHHHHhHCCCCCC-HHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC
Q 036198 389 ELGEPDGAFETWHEMDKRGCAQD-VDTYCVMIDGLFDCSKVEEACFLLEEVVNKG 442 (499)
Q Consensus 389 ~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 442 (499)
..++.+.|...+...... .|+ ...+..+...+...+..+++...+.+.....
T Consensus 214 ~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (291)
T COG0457 214 KLGKYEEALEYYEKALEL--DPDNAEALYNLALLLLELGRYEEALEALEKALELD 266 (291)
T ss_pred HcccHHHHHHHHHHHHhh--CcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 999999999999998875 333 3445555555557778999999988887664
|
|
| >PHA02875 ankyrin repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=87.74 E-value=27 Score=34.03 Aligned_cols=17 Identities=18% Similarity=0.106 Sum_probs=9.1
Q ss_pred HHHHhCCChHHHHHHHH
Q 036198 185 DALCKCGLVDYAETICK 201 (499)
Q Consensus 185 ~~~~~~g~~~~A~~~~~ 201 (499)
...+..|+.+-+..+++
T Consensus 7 ~~A~~~g~~~iv~~Ll~ 23 (413)
T PHA02875 7 CDAILFGELDIARRLLD 23 (413)
T ss_pred HHHHHhCCHHHHHHHHH
Confidence 34455666665555543
|
|
| >COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=87.71 E-value=21 Score=32.28 Aligned_cols=117 Identities=9% Similarity=0.034 Sum_probs=71.2
Q ss_pred CCCCCHHHHHHHHHHHHhC-CChHHHHHHHHHhhcC-CCCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 036198 172 KTQPEINALNLLLDALCKC-GLVDYAETICKRVKNK-VKPNANTYNILGMQTLEEMIQMGHAPDNFTYNTAIDTFCKARM 249 (499)
Q Consensus 172 ~~~~~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~-~~p~~~~~~~la~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 249 (499)
+..-|..-|-..++..-.- -.++++.++....+.+ ++...+.|.--..+.++.+ -..+++...+.|.++|.
T Consensus 222 ~~k~Dv~e~es~~rqi~~inltide~kelv~~ykgdyl~e~~y~Waedererle~l-------y~kllgkva~~yle~g~ 294 (361)
T COG3947 222 LPKYDVQEYESLARQIEAINLTIDELKELVGQYKGDYLPEADYPWAEDERERLEQL-------YMKLLGKVARAYLEAGK 294 (361)
T ss_pred CccccHHHHHHHhhhhhccccCHHHHHHHHHHhcCCcCCccccccccchHHHHHHH-------HHHHHHHHHHHHHHcCC
Confidence 3455666677776665433 4567777777776654 2223333321111111111 12234556677888888
Q ss_pred HhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 036198 250 VTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMI 299 (499)
Q Consensus 250 ~~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~ 299 (499)
+.+|.++.+....-+ +.+...+-.++..+...|+--.+.+-++.+.
T Consensus 295 ~neAi~l~qr~ltld----pL~e~~nk~lm~~la~~gD~is~~khyerya 340 (361)
T COG3947 295 PNEAIQLHQRALTLD----PLSEQDNKGLMASLATLGDEISAIKHYERYA 340 (361)
T ss_pred hHHHHHHHHHHhhcC----hhhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 888888888877764 5677777888888888888666666666654
|
|
| >KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=87.21 E-value=33 Score=36.58 Aligned_cols=27 Identities=19% Similarity=0.321 Sum_probs=20.5
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHHc
Q 036198 237 YNTAIDTFCKARMVTEAADLFEFMRTK 263 (499)
Q Consensus 237 ~~~li~~~~~~g~~~~a~~~~~~m~~~ 263 (499)
|..|+..|...|+.++|+++|.+..+.
T Consensus 507 y~~Li~LY~~kg~h~~AL~ll~~l~d~ 533 (877)
T KOG2063|consen 507 YRELIELYATKGMHEKALQLLRDLVDE 533 (877)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHhcc
Confidence 567777788888888888888777663
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=86.87 E-value=2.3 Score=24.00 Aligned_cols=30 Identities=7% Similarity=-0.001 Sum_probs=18.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhcC
Q 036198 449 KFDSYLMQLSVIGDLGAIHKLSDHMRKFYN 478 (499)
Q Consensus 449 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~ 478 (499)
+|..+..+|...|++++|...+++..+..|
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p 32 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALELDP 32 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHHCc
Confidence 455566666666666666666666665544
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=86.41 E-value=17 Score=30.04 Aligned_cols=51 Identities=10% Similarity=0.106 Sum_probs=20.9
Q ss_pred hCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 036198 424 DCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHMR 474 (499)
Q Consensus 424 ~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~ 474 (499)
..|.++.....++-+-..+-+.-...-..|.-+-.+.|++.+|.+.|..+.
T Consensus 144 D~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia 194 (221)
T COG4649 144 DNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIA 194 (221)
T ss_pred ccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHH
Confidence 344444444444433333222222223333344444455555554444443
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=86.17 E-value=2.4 Score=23.83 Aligned_cols=30 Identities=3% Similarity=-0.046 Sum_probs=18.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhcC
Q 036198 449 KFDSYLMQLSVIGDLGAIHKLSDHMRKFYN 478 (499)
Q Consensus 449 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~ 478 (499)
.+..+..++...|++++|.+.+++..+..|
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l~p 32 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALELDP 32 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCc
Confidence 445556666666666666666666665544
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=85.10 E-value=35 Score=32.28 Aligned_cols=66 Identities=14% Similarity=0.075 Sum_probs=44.1
Q ss_pred cChhhHHHHHHHHHhcCCchHHHHHHHHHhHCCCCC---CHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 036198 375 PSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQ---DVDTYCVMIDGLFDCSKVEEACFLLEEVVN 440 (499)
Q Consensus 375 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 440 (499)
....+|..+.+.+.+.|.++.|...+..+...+... .+...-.-...+...|+..+|...+++..+
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 345577778888888888888888888877643111 233344445556667888888887777665
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional | Back alignment and domain information |
|---|
Probab=84.46 E-value=8.4 Score=37.14 Aligned_cols=88 Identities=10% Similarity=-0.016 Sum_probs=43.2
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCcChhhHHHHHHHHHhcCCchHHHHHHHHHhHCCCCCCHHHHHHHHHHHHhCCCHHHHH
Q 036198 353 CDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEAC 432 (499)
Q Consensus 353 ~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~ 432 (499)
...|+++.+.+.+...... +.....+..++++...+.|++++|..+-..|....++ +..........--..|-++++.
T Consensus 334 ~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r~~~a~s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~ 411 (831)
T PRK15180 334 SHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLARWREALSTAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSY 411 (831)
T ss_pred HHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhhHHHHHHHHHHHhccccC-ChhheeeecccHHHHhHHHHHH
Confidence 3456666666555544332 2233445555666666666666666666665554443 2222222222222345556666
Q ss_pred HHHHHHHHCC
Q 036198 433 FLLEEVVNKG 442 (499)
Q Consensus 433 ~~~~~m~~~~ 442 (499)
..+++.....
T Consensus 412 ~~wk~~~~~~ 421 (831)
T PRK15180 412 HYWKRVLLLN 421 (831)
T ss_pred HHHHHHhccC
Confidence 6665555443
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=84.00 E-value=38 Score=31.77 Aligned_cols=166 Identities=13% Similarity=0.030 Sum_probs=85.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCCc---CHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCC-----CCCCHh
Q 036198 273 KTYAIMIVALVQNDRMEECFSLLGHMINS-GCLP---DVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKG-----YPPDIV 343 (499)
Q Consensus 273 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~-~~~~---~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~-----~~p~~~ 343 (499)
..|-.+-+++.+..++.+++.+-..-... |..| ......++-.++...+.++++++.|+...+.. ......
T Consensus 84 ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElq 163 (518)
T KOG1941|consen 84 EAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQ 163 (518)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeee
Confidence 34444455555555555555554433322 2112 11223345566666777777777777654431 112234
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHH----CCCCcChhhH-----HHHHHHHHhcCCchHHHHHHHHHhH----CCCCC
Q 036198 344 TYNCFLKVLCDNKNGDEALRLYGRMIE----VGCWPSVQTY-----NMLISMYFELGEPDGAFETWHEMDK----RGCAQ 410 (499)
Q Consensus 344 ~~~~li~~~~~~g~~~~a~~~~~~m~~----~~~~~~~~~~-----~~li~~~~~~~~~~~a~~~~~~m~~----~~~~p 410 (499)
+|..|-..|.+..++++|.-+.....+ .++.--...| -.|.-++-..|.+..|.+.-++..+ .|-++
T Consensus 164 vcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra 243 (518)
T KOG1941|consen 164 VCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRA 243 (518)
T ss_pred hhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChH
Confidence 677777777777887777665554432 2221111122 2233455666777777766665433 23221
Q ss_pred -CHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 036198 411 -DVDTYCVMIDGLFDCSKVEEACFLLEEV 438 (499)
Q Consensus 411 -~~~~~~~li~~~~~~g~~~~a~~~~~~m 438 (499)
-......+.+.|...|+.+.|+.-+++.
T Consensus 244 ~~arc~~~~aDIyR~~gd~e~af~rYe~A 272 (518)
T KOG1941|consen 244 LQARCLLCFADIYRSRGDLERAFRRYEQA 272 (518)
T ss_pred HHHHHHHHHHHHHHhcccHhHHHHHHHHH
Confidence 1223344556666777777776666543
|
|
| >KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=82.88 E-value=50 Score=32.41 Aligned_cols=99 Identities=11% Similarity=0.081 Sum_probs=60.2
Q ss_pred cChhhH-HHHHHHHHhcCCchHHHHHHHHHhHCCCCCCHHHHHHHHHHHH--hCCCHHHHHHHHHHHHH-CCCCCCHHHH
Q 036198 375 PSVQTY-NMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLF--DCSKVEEACFLLEEVVN-KGLKLPYRKF 450 (499)
Q Consensus 375 ~~~~~~-~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~--~~g~~~~a~~~~~~m~~-~~~~p~~~~~ 450 (499)
|+..|+ +.++..+-+.|...+|..++..+... .+|+...|..+|..=. .+-+..-+..+++.|.. .| -|+..|
T Consensus 457 ~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~l-pp~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~~fg--~d~~lw 533 (568)
T KOG2396|consen 457 ADSVTLKSKYLDWAYESGGYKKARKVYKSLQEL-PPFSLDLFRKMIQFEKEQESCNLANIREYYDRALREFG--ADSDLW 533 (568)
T ss_pred CceeehhHHHHHHHHHhcchHHHHHHHHHHHhC-CCccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHHHhC--CChHHH
Confidence 444444 45566666677777777777777665 3456666666665321 12236666777777664 35 466677
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhh
Q 036198 451 DSYLMQLSVIGDLGAIHKLSDHMRKF 476 (499)
Q Consensus 451 ~~ll~~~~~~g~~~~a~~~~~~m~~~ 476 (499)
...+.--...|..+.+-.++.+..+.
T Consensus 534 ~~y~~~e~~~g~~en~~~~~~ra~kt 559 (568)
T KOG2396|consen 534 MDYMKEELPLGRPENCGQIYWRAMKT 559 (568)
T ss_pred HHHHHhhccCCCcccccHHHHHHHHh
Confidence 66666666777777766665555443
|
|
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=82.74 E-value=3.5 Score=24.45 Aligned_cols=28 Identities=18% Similarity=0.139 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHhcCCHhHHHHHHHHHHH
Q 036198 235 FTYNTAIDTFCKARMVTEAADLFEFMRT 262 (499)
Q Consensus 235 ~~~~~li~~~~~~g~~~~a~~~~~~m~~ 262 (499)
.+++.+...|...|++++|+.++++...
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 4556666667777777777776666554
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=82.57 E-value=1.9 Score=24.69 Aligned_cols=22 Identities=9% Similarity=0.024 Sum_probs=14.2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHH
Q 036198 446 PYRKFDSYLMQLSVIGDLGAIH 467 (499)
Q Consensus 446 ~~~~~~~ll~~~~~~g~~~~a~ 467 (499)
+...|..+...|...|++++|+
T Consensus 12 n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 12 NAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred CHHHHHHHHHHHHHCcCHHhhc
Confidence 5566666666666666666654
|
|
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=82.12 E-value=30 Score=29.47 Aligned_cols=91 Identities=16% Similarity=0.076 Sum_probs=62.8
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCcC----hhhHHHHHHHHHhcCCchHHHHHHHHHhHCCCCCC-HHHHHHHHHHHHh
Q 036198 350 KVLCDNKNGDEALRLYGRMIEVGCWPS----VQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQD-VDTYCVMIDGLFD 424 (499)
Q Consensus 350 ~~~~~~g~~~~a~~~~~~m~~~~~~~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~li~~~~~ 424 (499)
+-+.+.|++++|..-|.+..+.-.... ...|..-..++.+.+.++.|++--....+.+ |+ ......-..+|-+
T Consensus 103 N~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~--pty~kAl~RRAeayek 180 (271)
T KOG4234|consen 103 NELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELN--PTYEKALERRAEAYEK 180 (271)
T ss_pred HHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcC--chhHHHHHHHHHHHHh
Confidence 446788999999999999887532111 2345555566778888888888777777653 31 1222233446778
Q ss_pred CCCHHHHHHHHHHHHHCC
Q 036198 425 CSKVEEACFLLEEVVNKG 442 (499)
Q Consensus 425 ~g~~~~a~~~~~~m~~~~ 442 (499)
...+++|+.=|+.+.+..
T Consensus 181 ~ek~eealeDyKki~E~d 198 (271)
T KOG4234|consen 181 MEKYEEALEDYKKILESD 198 (271)
T ss_pred hhhHHHHHHHHHHHHHhC
Confidence 888999999999988775
|
|
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=82.00 E-value=3.8 Score=24.25 Aligned_cols=30 Identities=7% Similarity=0.062 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhc
Q 036198 448 RKFDSYLMQLSVIGDLGAIHKLSDHMRKFY 477 (499)
Q Consensus 448 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~ 477 (499)
.+++.+...|...|++++|..++++..+..
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 32 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALEIR 32 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHHHH
Confidence 456667777777777777777777666543
|
|
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=81.67 E-value=42 Score=30.70 Aligned_cols=202 Identities=11% Similarity=0.004 Sum_probs=106.1
Q ss_pred CHHHHHHHHHHHHhcCCH----hHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCC-----HHHHHHHHHHHHHcCC
Q 036198 233 DNFTYNTAIDTFCKARMV----TEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDR-----MEECFSLLGHMINSGC 303 (499)
Q Consensus 233 ~~~~~~~li~~~~~~g~~----~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~-----~~~a~~~~~~m~~~~~ 303 (499)
|...-...+.+++..|+. +++...+..+.... ++..+-...+.++...+. ...+...+.....
T Consensus 67 d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~D-----~d~~VR~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~--- 138 (280)
T PRK09687 67 NPIERDIGADILSQLGMAKRCQDNVFNILNNLALED-----KSACVRASAINATGHRCKKNPLYSPKIVEQSQITAF--- 138 (280)
T ss_pred CHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhcC-----CCHHHHHHHHHHHhcccccccccchHHHHHHHHHhh---
Confidence 455555566666766653 45666666654332 455555555555554432 1223333333332
Q ss_pred CcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcC-CHHHHHHHHHHHHHCCCCcChhhHHH
Q 036198 304 LPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNK-NGDEALRLYGRMIEVGCWPSVQTYNM 382 (499)
Q Consensus 304 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g-~~~~a~~~~~~m~~~~~~~~~~~~~~ 382 (499)
.++..+-...+.++++.++. .+...+-.+.+. ++...-...+.++.+.+ +...+...+..+.. .++..+-..
T Consensus 139 D~~~~VR~~a~~aLg~~~~~-~ai~~L~~~L~d---~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L~---D~~~~VR~~ 211 (280)
T PRK09687 139 DKSTNVRFAVAFALSVINDE-AAIPLLINLLKD---PNGDVRNWAAFALNSNKYDNPDIREAFVAMLQ---DKNEEIRIE 211 (280)
T ss_pred CCCHHHHHHHHHHHhccCCH-HHHHHHHHHhcC---CCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhc---CCChHHHHH
Confidence 23555555666777777763 445555554443 34445555555555442 23345555555543 245666666
Q ss_pred HHHHHHhcCCchHHHHHHHHHhHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 036198 383 LISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLS 458 (499)
Q Consensus 383 li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~ 458 (499)
.+.++.+.++. .|...+-...+.+ + .....+.++...|.. +|...+..+.+.. ||...-...+.+|.
T Consensus 212 A~~aLg~~~~~-~av~~Li~~L~~~---~--~~~~a~~ALg~ig~~-~a~p~L~~l~~~~--~d~~v~~~a~~a~~ 278 (280)
T PRK09687 212 AIIGLALRKDK-RVLSVLIKELKKG---T--VGDLIIEAAGELGDK-TLLPVLDTLLYKF--DDNEIITKAIDKLK 278 (280)
T ss_pred HHHHHHccCCh-hHHHHHHHHHcCC---c--hHHHHHHHHHhcCCH-hHHHHHHHHHhhC--CChhHHHHHHHHHh
Confidence 77777777663 4444444444432 2 233566666677764 5666666666543 36555555555553
|
|
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=81.53 E-value=32 Score=29.20 Aligned_cols=97 Identities=12% Similarity=-0.022 Sum_probs=62.0
Q ss_pred HHHHHHhcCCchHHHHHHHHHhHCCCCCCHHHHH-----HHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 036198 383 LISMYFELGEPDGAFETWHEMDKRGCAQDVDTYC-----VMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQL 457 (499)
Q Consensus 383 li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~-----~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~ 457 (499)
+...+...|++++|+.-++..... |....+. .|.+.....|.+++|+.+++...+.++. ......-.+.+
T Consensus 95 lAk~~ve~~~~d~A~aqL~~~l~~---t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~--~~~~elrGDil 169 (207)
T COG2976 95 LAKAEVEANNLDKAEAQLKQALAQ---TKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESWA--AIVAELRGDIL 169 (207)
T ss_pred HHHHHHhhccHHHHHHHHHHHHcc---chhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccHH--HHHHHHhhhHH
Confidence 344567778888888887766543 2222232 3445566778888888888777655532 22333445777
Q ss_pred HhcCCHHHHHHHHHHHHhhcChhHHHH
Q 036198 458 SVIGDLGAIHKLSDHMRKFYNPVIARR 484 (499)
Q Consensus 458 ~~~g~~~~a~~~~~~m~~~~~~~~~~~ 484 (499)
...|+-++|..-|++..+.......+.
T Consensus 170 l~kg~k~~Ar~ay~kAl~~~~s~~~~~ 196 (207)
T COG2976 170 LAKGDKQEARAAYEKALESDASPAARE 196 (207)
T ss_pred HHcCchHHHHHHHHHHHHccCChHHHH
Confidence 888888888888888887764444443
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=81.29 E-value=4.9 Score=22.57 Aligned_cols=28 Identities=11% Similarity=0.121 Sum_probs=17.4
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHHHc
Q 036198 236 TYNTAIDTFCKARMVTEAADLFEFMRTK 263 (499)
Q Consensus 236 ~~~~li~~~~~~g~~~~a~~~~~~m~~~ 263 (499)
+|..+..+|...|++++|+..|++..+.
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~~ 30 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALEL 30 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHH
Confidence 4556666666666666666666666654
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >PF13929 mRNA_stabil: mRNA stabilisation | Back alignment and domain information |
|---|
Probab=81.12 E-value=43 Score=30.43 Aligned_cols=136 Identities=10% Similarity=0.100 Sum_probs=86.1
Q ss_pred HHHHHHHHHHHHh-CCCCCCHhhHHHHHHHHHH-cC-CHHHHHHHHHHHHH-CCCCcChhhHHHHHHHHHhcCCchHHHH
Q 036198 323 VEEAYKFLEEMGN-KGYPPDIVTYNCFLKVLCD-NK-NGDEALRLYGRMIE-VGCWPSVQTYNMLISMYFELGEPDGAFE 398 (499)
Q Consensus 323 ~~~a~~~~~~m~~-~~~~p~~~~~~~li~~~~~-~g-~~~~a~~~~~~m~~-~~~~~~~~~~~~li~~~~~~~~~~~a~~ 398 (499)
+.+|+.+|+.... ..+--|..+...+++.... .+ ....-.++.+-+.. .|-.++..+...++..+++.+++.+-.+
T Consensus 144 Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~~ 223 (292)
T PF13929_consen 144 VVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLFQ 223 (292)
T ss_pred HHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHHH
Confidence 4555666653222 2244466666777766655 22 22222333333332 2355777888888888999999999888
Q ss_pred HHHHHhHC-CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHH-----HHHCCCCCCHHHHHHHHHHHH
Q 036198 399 TWHEMDKR-GCAQDVDTYCVMIDGLFDCSKVEEACFLLEE-----VVNKGLKLPYRKFDSYLMQLS 458 (499)
Q Consensus 399 ~~~~m~~~-~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~-----m~~~~~~p~~~~~~~ll~~~~ 458 (499)
+|...... +..-|...|..+|......|+..-..++..+ ++..|+..+...-..+-+.+.
T Consensus 224 fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~GhLLwikR~~V~v~~~L~~~L~~LF~ 289 (292)
T PF13929_consen 224 FWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDDGHLLWIKRNNVDVTDELRSQLSELFK 289 (292)
T ss_pred HHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhCCCeEEeeecCCcCCHHHHHHHHHHHH
Confidence 88877655 5566778889999998899988777666654 234566666666555544443
|
|
| >PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=80.79 E-value=0.56 Score=37.89 Aligned_cols=86 Identities=9% Similarity=0.096 Sum_probs=62.3
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCCcChhhHHHHHHHHHhcCCchHHHHHHHHHhHCCCCCCHHHHHHHHHHHHhCC
Q 036198 347 CFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCS 426 (499)
Q Consensus 347 ~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g 426 (499)
.++..+.+.+.++.+..+++.+...+...+....+.++..|++.+..++..++++.. +..-...+++.|.+.|
T Consensus 12 ~vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~-------~~yd~~~~~~~c~~~~ 84 (143)
T PF00637_consen 12 EVISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTS-------NNYDLDKALRLCEKHG 84 (143)
T ss_dssp CCHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSS-------SSS-CTHHHHHHHTTT
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccc-------cccCHHHHHHHHHhcc
Confidence 456777778888888888888887665567788888999999888878888877721 1123356777778888
Q ss_pred CHHHHHHHHHHHH
Q 036198 427 KVEEACFLLEEVV 439 (499)
Q Consensus 427 ~~~~a~~~~~~m~ 439 (499)
.+++|..++.++-
T Consensus 85 l~~~a~~Ly~~~~ 97 (143)
T PF00637_consen 85 LYEEAVYLYSKLG 97 (143)
T ss_dssp SHHHHHHHHHCCT
T ss_pred hHHHHHHHHHHcc
Confidence 8888888877653
|
These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L. |
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=80.64 E-value=59 Score=31.74 Aligned_cols=132 Identities=12% Similarity=0.085 Sum_probs=63.7
Q ss_pred HHH--HHHHHHHHhcC-----CHhHHHHHHHHHHHcCCCCCCCC-HHHHHHHHHHHHH---------cCCHHHHHHHHHH
Q 036198 235 FTY--NTAIDTFCKAR-----MVTEAADLFEFMRTKGSTISSPT-AKTYAIMIVALVQ---------NDRMEECFSLLGH 297 (499)
Q Consensus 235 ~~~--~~li~~~~~~g-----~~~~a~~~~~~m~~~~~~~~~p~-~~~~~~ll~~~~~---------~~~~~~a~~~~~~ 297 (499)
..| ..++++..... ..+.|+.+|.+...... ..|+ ...|..+-.++.. ..+..+|.++-+.
T Consensus 252 ~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~--ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~r 329 (458)
T PRK11906 252 NHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSD--IQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDY 329 (458)
T ss_pred cchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhccc--CCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHH
Confidence 455 55666655422 25678888888873221 2333 3344333332221 1223444555555
Q ss_pred HHHcCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 036198 298 MINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIE 370 (499)
Q Consensus 298 m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 370 (499)
..+.+ +.|......+..+....++.+.|...|++....+.. ...+|....-.+.-.|+.++|.+.+++..+
T Consensus 330 Aveld-~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn-~A~~~~~~~~~~~~~G~~~~a~~~i~~alr 400 (458)
T PRK11906 330 VSDIT-TVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTD-IASLYYYRALVHFHNEKIEEARICIDKSLQ 400 (458)
T ss_pred HHhcC-CCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 55443 334455555555555555566666666665544321 222232223333345666666666655444
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=80.38 E-value=26 Score=35.11 Aligned_cols=97 Identities=18% Similarity=0.144 Sum_probs=45.5
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcChhhHHHHHHHHHhcCCchHHH
Q 036198 318 CLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAF 397 (499)
Q Consensus 318 ~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~ 397 (499)
.+.|+++.|.++..+. -+..-|..|..+..+.+++..|.+.|..... |..|+-.+...|+-+...
T Consensus 648 l~lgrl~iA~~la~e~------~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~ 712 (794)
T KOG0276|consen 648 LKLGRLDIAFDLAVEA------NSEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLA 712 (794)
T ss_pred hhcCcHHHHHHHHHhh------cchHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHH
Confidence 3445555555444331 2444555555555555555555555544332 233444444445544444
Q ss_pred HHHHHHhHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHH
Q 036198 398 ETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLL 435 (499)
Q Consensus 398 ~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~ 435 (499)
.+-...++.|. .|.-.-+|...|+++++.+++
T Consensus 713 ~la~~~~~~g~------~N~AF~~~~l~g~~~~C~~lL 744 (794)
T KOG0276|consen 713 VLASLAKKQGK------NNLAFLAYFLSGDYEECLELL 744 (794)
T ss_pred HHHHHHHhhcc------cchHHHHHHHcCCHHHHHHHH
Confidence 44444443332 133333444555555555554
|
|
| >PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=80.26 E-value=0.62 Score=37.61 Aligned_cols=128 Identities=12% Similarity=0.075 Sum_probs=83.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcChhhHHHHHHHHHhcCC
Q 036198 313 VLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGE 392 (499)
Q Consensus 313 ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~ 392 (499)
++..+.+.+.++.+..+++.+...+...+....+.++..|++.+..+...++++. .+..-...++..|.+.|.
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~-------~~~yd~~~~~~~c~~~~l 85 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKT-------SNNYDLDKALRLCEKHGL 85 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTS-------SSSS-CTHHHHHHHTTTS
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHccc-------ccccCHHHHHHHHHhcch
Confidence 5677777888888999999998777666788899999999999888888888771 222333566777777787
Q ss_pred chHHHHHHHHHhHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 036198 393 PDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGD 462 (499)
Q Consensus 393 ~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~ 462 (499)
+++|.-++.++.... ..+..+...++++.|.+++.+. ++...|..++..|...+.
T Consensus 86 ~~~a~~Ly~~~~~~~---------~al~i~~~~~~~~~a~e~~~~~------~~~~l~~~l~~~~l~~~~ 140 (143)
T PF00637_consen 86 YEEAVYLYSKLGNHD---------EALEILHKLKDYEEAIEYAKKV------DDPELWEQLLKYCLDSKP 140 (143)
T ss_dssp HHHHHHHHHCCTTHT---------TCSSTSSSTHCSCCCTTTGGGC------SSSHHHHHHHHHHCTSTC
T ss_pred HHHHHHHHHHcccHH---------HHHHHHHHHccHHHHHHHHHhc------CcHHHHHHHHHHHHhcCc
Confidence 777777666643321 1111122334455555333222 457788888877776654
|
These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L. |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 81.8 bits (200), Expect = 2e-16
Identities = 21/191 (10%), Positives = 50/191 (26%), Gaps = 1/191 (0%)
Query: 222 LEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVA 281
+ Q + + A L + T Y +++
Sbjct: 115 SGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLG 174
Query: 282 LVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAY-KFLEEMGNKGYPP 340
+ +E +L + ++G PD+ +Y L+ M + + LE+M +G
Sbjct: 175 WARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKL 234
Query: 341 DIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETW 400
+ L ++ P + L+ + +
Sbjct: 235 QALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAKDGRVSYPKLH 294
Query: 401 HEMDKRGCAQD 411
+ C +
Sbjct: 295 LPLKTLQCLFE 305
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 72.5 bits (176), Expect = 2e-13
Identities = 24/212 (11%), Positives = 52/212 (24%), Gaps = 23/212 (10%)
Query: 168 KIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQTLEEMIQ 227
+ + + L + A + + Q
Sbjct: 118 HSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHL-------------------LVVHHGQRQ 158
Query: 228 MGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDR 287
YN + + + E + ++ G T P +YA + + + D+
Sbjct: 159 KRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLT---PDLLSYAAALQCMGRQDQ 215
Query: 288 MEECFS-LLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYN 346
L M G +L A ++ +K P V +
Sbjct: 216 DAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTS 275
Query: 347 CFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQ 378
L+ + +L+ + + C Q
Sbjct: 276 KLLRDVYAKDGRVSYPKLHLPLKTLQCLFEKQ 307
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 66.0 bits (159), Expect = 2e-11
Identities = 20/203 (9%), Positives = 48/203 (23%), Gaps = 1/203 (0%)
Query: 223 EEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVAL 282
+ Q +P + + + + +
Sbjct: 81 DCTRQAPESPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLT 140
Query: 283 VQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDI 342
Q + L + Y V+ G G +E L + + G PD+
Sbjct: 141 DQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDL 200
Query: 343 VTYNCFLKVLCDNKNGDEAL-RLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWH 401
++Y L+ + + R +M + G +L+S +
Sbjct: 201 LSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKP 260
Query: 402 EMDKRGCAQDVDTYCVMIDGLFD 424
++ ++
Sbjct: 261 TFSLPPQLPPPVNTSKLLRDVYA 283
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 44.8 bits (105), Expect = 6e-05
Identities = 68/430 (15%), Positives = 130/430 (30%), Gaps = 111/430 (25%)
Query: 125 LSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLMILKQYTEKIK--VKTQPEINALNL 182
+Y+ K ++ D N D+ IL E+I + ++ ++
Sbjct: 11 TGEHQYQYKD--ILSVFEDAFVDNFDCKDVQDMPKSILS--KEEIDHIIMSKDAVSGTLR 66
Query: 183 LLDALCKCGLVDYAETICKR-VKNKVKPNANTYNILGMQTLEEMIQMGHAPDNFTYNTAI 241
L L E + ++ V+ ++ N Y L E Q + Y
Sbjct: 67 LFWTLL-----SKQEEMVQKFVEEVLRIN---YKFLMSPIKTEQRQ--PSMMTRMYIEQR 116
Query: 242 DTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINS 301
D R+ + +F K + +S + Y + AL R + + G ++ S
Sbjct: 117 D-----RLYNDN-QVF----AKYN-VSRL--QPYLKLRQAL-LELRPAKNVLIDG-VLGS 161
Query: 302 GCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGD-- 359
G K + A V +YK +M K + +L + N
Sbjct: 162 G--------KTWV-----ALDVCLSYKVQCKMDFKIF---------WLNLKNCNSPETVL 199
Query: 360 EAL-RLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAF------------------ETW 400
E L +L ++ S + N+ + ++ E + W
Sbjct: 200 EMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAW 259
Query: 401 HEMDKRGC--------AQDVD------TYCVMIDGLFDCSKVEEACFLLEEVVN-KGLKL 445
+ + C Q D T + +D +E LL + ++ + L
Sbjct: 260 NAFNL-SCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDL 318
Query: 446 PYRKFDSYLMQLSVIGDL---GAIH----------KLSDHMRKFYN---PVIARR----L 485
P + +LS+I + G KL+ + N P R+ L
Sbjct: 319 PREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRL 378
Query: 486 ALNQKRVRIS 495
++ I
Sbjct: 379 SVFPPSAHIP 388
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 42.1 bits (98), Expect = 4e-04
Identities = 60/395 (15%), Positives = 110/395 (27%), Gaps = 136/395 (34%)
Query: 38 CKVFDESSDSVSDVAKLYEAIIDNSNAYDNMEKALDSLGVPLTTDSVVGVLQRFQFEEK- 96
CK+ + + D +A +LD + LT D V +L ++ + +
Sbjct: 266 CKILLTTRFK---------QVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKY-LDCRP 315
Query: 97 -----------------IAFRFFMWAGHQDNYAHEPLAYNLM---------IDILSSTKY 130
IA DN+ H N +++L +Y
Sbjct: 316 QDLPREVLTTNPRRLSIIAESIRDGLATWDNWKH----VNCDKLTTIIESSLNVLEPAEY 371
Query: 131 KAKQFRLVCSMLDYMKRNNKVFVPVDVLLMILKQYTEKIKVKTQPEINALNLLLDALCKC 190
+ K F S+ + +P + L ++ + + IK ++++ L K
Sbjct: 372 R-KMFDR-LSVF----PPS-AHIPTIL-LSLI--WFDVIKSDVM-------VVVNKLHKY 414
Query: 191 GLVDYAETICKRVKNKVKPNANTYNILGMQ-----TLEEMIQMGHA--------PDNFTY 237
LV+ K+ K +T +I + LE + H P F
Sbjct: 415 SLVE------KQPKE------STISIPSIYLELKVKLENEYAL-HRSIVDHYNIPKTFDS 461
Query: 238 NTAIDT-----FC--------KARMVTEAADLFE-------FMRTKGSTISSPTAKTYAI 277
+ I F E LF F+ K TA +
Sbjct: 462 DDLIPPYLDQYFYSHIGHHLKNIEH-PERMTLFRMVFLDFRFLEQK--IRHDSTAWNASG 518
Query: 278 MIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMC--LAGKVEEAYKFLEEMGN 335
I+ +Q + YK + V FL ++
Sbjct: 519 SILNTLQ---------------------QLKFYKPYICDNDPKYERLVNAILDFLPKIEE 557
Query: 336 KGYPPDIVTYNCFLKVLCDNKNG---DEALRLYGR 367
Y L++ ++ +EA + R
Sbjct: 558 NLI---CSKYTDLLRIALMAEDEAIFEEAHKQVQR 589
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 499 | |||
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 100.0 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 100.0 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.94 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.92 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.9 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.88 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.87 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.85 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.83 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.82 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.81 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.8 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.79 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.78 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.77 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.77 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.76 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.75 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.74 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.74 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.73 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.72 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.71 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.69 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.67 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.67 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.65 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.64 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.63 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.62 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.62 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.61 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.61 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.58 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.57 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.57 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.57 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.57 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.56 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.56 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.55 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.53 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.53 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.52 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.52 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.52 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.52 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.52 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.52 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.48 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.48 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.47 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.47 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.45 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.45 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.44 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.43 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.41 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.4 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.38 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.38 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.35 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.35 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.35 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.34 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.34 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.32 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.28 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.27 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.27 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.25 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.24 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.24 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.23 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.23 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.2 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.19 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.18 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.16 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.12 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.11 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.08 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 99.08 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.06 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.04 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 98.99 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 98.98 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 98.97 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 98.96 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 98.89 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 98.88 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 98.85 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 98.84 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 98.83 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 98.83 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 98.81 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 98.79 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 98.78 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 98.78 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 98.76 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 98.75 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.75 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 98.72 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.71 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 98.7 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 98.68 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.66 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 98.66 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 98.65 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.65 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.65 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 98.63 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.61 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 98.61 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 98.6 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.59 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.55 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.55 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.54 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.52 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.51 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.5 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.43 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.43 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.43 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.43 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.43 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.4 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.38 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.37 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.36 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.35 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.34 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.34 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.33 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.33 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.32 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.31 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.3 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.3 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.28 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.27 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.26 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.25 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.25 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 98.24 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.24 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.2 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.19 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.14 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.14 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 98.13 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.12 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 98.11 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.1 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.1 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.09 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.09 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.07 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.07 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.06 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.04 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.03 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.03 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.02 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.02 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.02 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.01 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.0 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 97.99 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 97.95 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 97.93 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 97.91 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 97.91 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 97.88 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 97.79 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 97.78 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 97.78 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 97.78 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 97.76 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 97.69 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 97.68 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 97.67 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 97.66 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 97.65 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 97.63 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 97.58 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 97.57 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 97.56 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 97.5 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 97.48 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 97.42 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 97.41 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 97.4 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 97.38 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 97.28 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 97.23 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 97.2 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 97.14 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 97.13 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 97.06 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 97.03 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 96.75 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 96.74 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 96.68 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 96.63 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 96.62 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 96.59 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 96.52 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 96.52 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 96.5 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 96.33 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 96.16 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 96.15 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 95.99 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 95.92 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 95.71 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 95.7 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 95.65 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 95.52 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 95.4 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 95.3 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 95.05 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 94.95 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 94.82 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 94.17 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 94.07 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 93.68 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 93.09 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 93.01 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 92.58 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 91.64 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 90.8 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 90.55 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 90.55 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 90.17 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 89.17 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 89.09 | |
| 2y69_E | 152 | Cytochrome C oxidase subunit 5A; electron transpor | 87.19 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 87.04 | |
| 3txn_A | 394 | 26S proteasome regulatory complex subunit P42B; PC | 86.77 | |
| 1wdy_A | 285 | 2-5A-dependent ribonuclease; hydrolase, RNA-bindin | 86.65 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 86.51 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 85.81 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 84.46 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 83.89 | |
| 2y69_E | 152 | Cytochrome C oxidase subunit 5A; electron transpor | 81.51 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 81.3 |
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-32 Score=281.21 Aligned_cols=455 Identities=7% Similarity=-0.072 Sum_probs=355.4
Q ss_pred cchhhHHHHHHHh-ccCccchhhccCCccccccccccCCCcchHHHHHHHHHhccCCCchHHHHHhhCC----CCCCHHH
Q 036198 9 PTEAQYAVLVRVI-RTKSLQSYIGKVPSLVCKVFDESSDSVSDVAKLYEAIIDNSNAYDNMEKALDSLG----VPLTTDS 83 (499)
Q Consensus 9 p~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~al~~~~----~~~~~~~ 83 (499)
|+...|+.+++.+ +.++...+......+. ... |+...+..+...+.+.|++++|++.+. .+.++..
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~--------~~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 152 (597)
T 2xpi_A 82 SREDYLRLWRHDALMQQQYKCAAFVGEKVL--------DIT-GNPNDAFWLAQVYCCTGDYARAKCLLTKEDLYNRSSAC 152 (597)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHH--------HHH-CCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGGGTCHHH
T ss_pred HHHHHHHHHHHHHHHccCchHHHHHHHHHH--------hhC-CCchHHHHHHHHHHHcCcHHHHHHHHHHHhccccchhH
Confidence 6778888888887 6666666654433322 112 233667889999999999999887653 3344554
Q ss_pred HHHHHHcc--CCChHHHHHHHHHhhcCC--------------CCCCCHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHHH
Q 036198 84 VVGVLQRF--QFEEKIAFRFFMWAGHQD--------------NYAHEPLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKR 147 (499)
Q Consensus 84 ~~~~l~~~--~~~~~~a~~~f~~~~~~~--------------~~~~~~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~ 147 (499)
...+.... ....+.|.++|+.+.... +..++..+|+.++.++. +.|++++|.++|++|.+
T Consensus 153 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~g~~~~A~~~~~~~~~ 228 (597)
T 2xpi_A 153 RYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYT----NLSNFDRAKECYKEALM 228 (597)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHH----HTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHH----HcCCHHHHHHHHHHHHH
Confidence 44333222 355678888887432222 33446899999999999 99999999999999998
Q ss_pred cCCCcccHHHHHHHHHH----------------HHHhhhcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHhhcCCCCCh
Q 036198 148 NNKVFVPVDVLLMILKQ----------------YTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNA 211 (499)
Q Consensus 148 ~~~~~~~~~~~~~~l~~----------------~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~ 211 (499)
.+ +.....+..+... +..+...+..+...+|+.++..|.+.|++++|.++|+++.+. +++.
T Consensus 229 ~~--p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~-~~~~ 305 (597)
T 2xpi_A 229 VD--AKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL-EKSS 305 (597)
T ss_dssp HC--TTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG-GGCH
T ss_pred hC--chhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC-CchH
Confidence 77 3333333322211 111122222333445566666777777777777777776654 4566
Q ss_pred hhHHHH------------HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCCCCHHHHHHHH
Q 036198 212 NTYNIL------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMI 279 (499)
Q Consensus 212 ~~~~~l------------a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~p~~~~~~~ll 279 (499)
.+|+.+ |.++|+++.+.+.. +..+++.++.+|.+.|++++|.++|+++.+.. +.+..+|+.++
T Consensus 306 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----~~~~~~~~~l~ 380 (597)
T 2xpi_A 306 DLLLCKADTLFVRSRFIDVLAITTKILEIDPY-NLDVYPLHLASLHESGEKNKLYLISNDLVDRH----PEKAVTWLAVG 380 (597)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC----TTSHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcc-cHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC----cccHHHHHHHH
Confidence 666666 66777777766543 77889999999999999999999999999764 56789999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHH
Q 036198 280 VALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGD 359 (499)
Q Consensus 280 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~ 359 (499)
..|.+.|++++|.++|+++.+.. +.+..+|+.++.+|.+.|++++|.++|+++.+.+. .+..+|+.++.+|.+.|+++
T Consensus 381 ~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~ 458 (597)
T 2xpi_A 381 IYYLCVNKISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQ-GTHLPYLFLGMQHMQLGNIL 458 (597)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTT-TCSHHHHHHHHHHHHHTCHH
T ss_pred HHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-cchHHHHHHHHHHHHcCCHH
Confidence 99999999999999999998864 45688999999999999999999999999988753 47889999999999999999
Q ss_pred HHHHHHHHHHHCCCCcChhhHHHHHHHHHhcCCchHHHHHHHHHhHC----CCCCC--HHHHHHHHHHHHhCCCHHHHHH
Q 036198 360 EALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKR----GCAQD--VDTYCVMIDGLFDCSKVEEACF 433 (499)
Q Consensus 360 ~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----~~~p~--~~~~~~li~~~~~~g~~~~a~~ 433 (499)
+|.++|+++.+.. +.+..+|+.++.+|.+.|++++|.++|+++.+. +..|+ ..+|..+..+|.+.|++++|.+
T Consensus 459 ~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~ 537 (597)
T 2xpi_A 459 LANEYLQSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAID 537 (597)
T ss_dssp HHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHH
Confidence 9999999999864 347889999999999999999999999999775 66787 7899999999999999999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcChhHHHHHHHH
Q 036198 434 LLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHMRKFYNPVIARRLALN 488 (499)
Q Consensus 434 ~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~ 488 (499)
+++++.+.+ +.+..+|..+..+|.+.|++++|.++++++.+..+.....+..+.
T Consensus 538 ~~~~~~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~ 591 (597)
T 2xpi_A 538 ALNQGLLLS-TNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMASDLLK 591 (597)
T ss_dssp HHHHHHHHS-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHH
Confidence 999999886 348899999999999999999999999999999887766555544
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-32 Score=268.93 Aligned_cols=201 Identities=15% Similarity=0.235 Sum_probs=182.7
Q ss_pred HHHHHHcCCCCCH-HHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCC---------HHHH
Q 036198 222 LEEMIQMGHAPDN-FTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDR---------MEEC 291 (499)
Q Consensus 222 ~~~m~~~g~~p~~-~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~---------~~~a 291 (499)
.+.+.+.+..+.+ ..++.+|++|++.|++++|+++|++|.+.| ++||..+||++|.+|++.+. +++|
T Consensus 13 ~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~G---v~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A 89 (501)
T 4g26_A 13 SRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNG---VQLSQYHYNVLLYVCSLAEAATESSPNPGLSRG 89 (501)
T ss_dssp -----------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHT---CCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHH
T ss_pred HHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC---CCCCHhHHHHHHHHHHhCCchhhhhhcchHHHH
Confidence 3444455555443 468899999999999999999999999999 89999999999999987664 7899
Q ss_pred HHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 036198 292 FSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEV 371 (499)
Q Consensus 292 ~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 371 (499)
.++|++|.+.|+.||..||++||.+|++.|++++|.++|++|.+.|+.||..+|+++|.+|++.|++++|.++|++|.+.
T Consensus 90 ~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~ 169 (501)
T 4g26_A 90 FDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVES 169 (501)
T ss_dssp HHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcChhhHHHHHHHHHhcCCchHHHHHHHHHhHCCCCCCHHHHHHHHHHHHhC
Q 036198 372 GCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDC 425 (499)
Q Consensus 372 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 425 (499)
|+.||..||++||.+|++.|+.++|.+++++|++.|..|+..||+.++..|+..
T Consensus 170 G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 170 EVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp TCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred CCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999999999999999999999863
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-32 Score=269.44 Aligned_cols=207 Identities=13% Similarity=0.159 Sum_probs=183.3
Q ss_pred hHHHHHHHHHHHcCCCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCC-------
Q 036198 251 TEAADLFEFMRTKGSTISSPT-AKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGK------- 322 (499)
Q Consensus 251 ~~a~~~~~~m~~~~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~------- 322 (499)
..+..+.+++.+++ ..++ ...++.+|.+|++.|++++|+++|++|.+.|+.||..||+.||.+|++.+.
T Consensus 7 s~~e~L~~~~~~k~---~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~ 83 (501)
T 4g26_A 7 SPSENLSRKAKKKA---IQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPN 83 (501)
T ss_dssp --------------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCC
T ss_pred chHHHHHHHHHHhc---ccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhc
Confidence 45666777787777 3333 446889999999999999999999999999999999999999999997764
Q ss_pred --HHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcChhhHHHHHHHHHhcCCchHHHHHH
Q 036198 323 --VEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETW 400 (499)
Q Consensus 323 --~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~ 400 (499)
++.|.++|++|...|+.||..||+++|.+|++.|++++|.++|++|.+.|+.||..||+.+|.+|++.|++++|.++|
T Consensus 84 ~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~ 163 (501)
T 4g26_A 84 PGLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVD 163 (501)
T ss_dssp HHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred chHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHH
Confidence 789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 036198 401 HEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVI 460 (499)
Q Consensus 401 ~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~ 460 (499)
++|.+.|+.||..||+.||.+|++.|++++|.+++++|.+.|..|+..||+.++..|...
T Consensus 164 ~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 164 AHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred HHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999999999999999999999999998764
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-29 Score=259.79 Aligned_cols=414 Identities=10% Similarity=-0.031 Sum_probs=329.8
Q ss_pred hHHHHHHHHHhccCCCchHHHHHhhCC----CCCCHHHHHHHHHcc--CCChHHHHHHHHHhhcCCCCCCCHHHHHHHHH
Q 036198 50 DVAKLYEAIIDNSNAYDNMEKALDSLG----VPLTTDSVVGVLQRF--QFEEKIAFRFFMWAGHQDNYAHEPLAYNLMID 123 (499)
Q Consensus 50 ~~~~~~~~l~~~~~~~~~~~~al~~~~----~~~~~~~~~~~l~~~--~~~~~~a~~~f~~~~~~~~~~~~~~~~~~li~ 123 (499)
++...|..++..+.+.|++++|+..+. ..++...+..+...+ ....+.|..+|+.+.. ..++..+++.++.
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~~~l~~ 158 (597)
T 2xpi_A 82 SREDYLRLWRHDALMQQQYKCAAFVGEKVLDITGNPNDAFWLAQVYCCTGDYARAKCLLTKEDL---YNRSSACRYLAAF 158 (597)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCG---GGTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCchHHHHHHHHHHhhCCCchHHHHHHHHHHHcCcHHHHHHHHHHHhc---cccchhHHHHHHH
Confidence 456778889999999999888876542 233444333333222 3456678888887632 3568889999999
Q ss_pred HHhcchhhhhhHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHh
Q 036198 124 ILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLMILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRV 203 (499)
Q Consensus 124 ~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 203 (499)
+|. +.|++++|..+|+++..... .... ..-......+.+++..+|+.++.+|.+.|++++|.++|+++
T Consensus 159 ~~~----~~g~~~~A~~~~~~~~~~~~-----~~~~---~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 226 (597)
T 2xpi_A 159 CLV----KLYDWQGALNLLGETNPFRK-----DEKN---ANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEA 226 (597)
T ss_dssp HHH----HTTCHHHHHHHHCSSCTTC------------------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHH----HHhhHHHHHHHHhccCCccc-----cccc---cccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 999 88999999999885322210 0000 00001122344567889999999999999999999999999
Q ss_pred hcCCCCChhhHHHH--------------------------------------------------HHHHHHHHHHcCCCCC
Q 036198 204 KNKVKPNANTYNIL--------------------------------------------------GMQTLEEMIQMGHAPD 233 (499)
Q Consensus 204 ~~~~~p~~~~~~~l--------------------------------------------------a~~~~~~m~~~g~~p~ 233 (499)
.+..+.+...+..+ |.++|+++.+. +++
T Consensus 227 ~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~ 304 (597)
T 2xpi_A 227 LMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL--EKS 304 (597)
T ss_dssp HHHCTTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG--GGC
T ss_pred HHhCchhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC--Cch
Confidence 86433333332211 66667766654 579
Q ss_pred HHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHhHHHH
Q 036198 234 NFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEV 313 (499)
Q Consensus 234 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l 313 (499)
..+|+.++.+|.+.|++++|.++|+++.+.+ +.+..+++.++.++.+.|++++|..+++++.+.. +.+..+++.+
T Consensus 305 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l 379 (597)
T 2xpi_A 305 SDLLLCKADTLFVRSRFIDVLAITTKILEID----PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAV 379 (597)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC----cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHH
Confidence 9999999999999999999999999999876 3477889999999999999999999999998664 5678899999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcChhhHHHHHHHHHhcCCc
Q 036198 314 LEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEP 393 (499)
Q Consensus 314 l~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~ 393 (499)
..+|.+.|++++|.++|+++.+... .+..+|+.++.+|.+.|++++|.++|+++.+.+ +.+..+|+.++.+|.+.|++
T Consensus 380 ~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~ 457 (597)
T 2xpi_A 380 GIYYLCVNKISEARRYFSKSSTMDP-QFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNI 457 (597)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCH
T ss_pred HHHHHHhccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCH
Confidence 9999999999999999999987542 367899999999999999999999999999865 35788999999999999999
Q ss_pred hHHHHHHHHHhHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHC----CCCCC--HHHHHHHHHHHHhcCCHHHHH
Q 036198 394 DGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNK----GLKLP--YRKFDSYLMQLSVIGDLGAIH 467 (499)
Q Consensus 394 ~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~p~--~~~~~~ll~~~~~~g~~~~a~ 467 (499)
++|.++|+++.+.. +.+..+|..++..|.+.|++++|.++|+++.+. +..|+ ..+|..+..+|.+.|++++|.
T Consensus 458 ~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~ 536 (597)
T 2xpi_A 458 LLANEYLQSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAI 536 (597)
T ss_dssp HHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHH
Confidence 99999999998763 347889999999999999999999999999876 66787 789999999999999999999
Q ss_pred HHHHHHHhhcChhHHHHHHHH
Q 036198 468 KLSDHMRKFYNPVIARRLALN 488 (499)
Q Consensus 468 ~~~~~m~~~~~~~~~~~~~~~ 488 (499)
++++++.+..+....-++.+.
T Consensus 537 ~~~~~~~~~~p~~~~~~~~l~ 557 (597)
T 2xpi_A 537 DALNQGLLLSTNDANVHTAIA 557 (597)
T ss_dssp HHHHHHHHHSSCCHHHHHHHH
T ss_pred HHHHHHHHhCCCChHHHHHHH
Confidence 999999998776555444443
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.94 E-value=1.8e-22 Score=194.55 Aligned_cols=335 Identities=12% Similarity=-0.000 Sum_probs=265.5
Q ss_pred CCChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHHhhhc
Q 036198 92 QFEEKIAFRFFMWAGHQDNYAHEPLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLMILKQYTEKIKV 171 (499)
Q Consensus 92 ~~~~~~a~~~f~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~l~~~~~~~~~ 171 (499)
....+.|..+++...... +.+..+|..+...+. +.|++++|...|+++.+..
T Consensus 46 ~~~~~~a~~~~~~a~~~~--p~~~~~~~~lg~~~~----~~g~~~~A~~~~~~al~~~---------------------- 97 (388)
T 1w3b_A 46 CRRLDRSAHFSTLAIKQN--PLLAEAYSNLGNVYK----ERGQLQEAIEHYRHALRLK---------------------- 97 (388)
T ss_dssp TTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHH----HHTCHHHHHHHHHHHHHHC----------------------
T ss_pred cCCHHHHHHHHHHHHhcC--CCchHHHHHHHHHHH----HCCCHHHHHHHHHHHHHcC----------------------
Confidence 445556666665543321 235566666666666 6666666666666665543
Q ss_pred CCCCCHHHHHHHHHHHHhCCChHHHHHHHHHhhcCCCCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHh
Q 036198 172 KTQPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVT 251 (499)
Q Consensus 172 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~~~~~la~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~ 251 (499)
+.+..+|..+..++.+.|++++|.+.|+++.+ .. +.+...+..+...+...|+++
T Consensus 98 --p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~----------------------~~-p~~~~~~~~l~~~~~~~g~~~ 152 (388)
T 1w3b_A 98 --PDFIDGYINLAAALVAAGDMEGAVQAYVSALQ----------------------YN-PDLYCVRSDLGNLLKALGRLE 152 (388)
T ss_dssp --TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHH----------------------HC-TTCTHHHHHHHHHHHTTSCHH
T ss_pred --cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----------------------hC-CCcHHHHHHHHHHHHHccCHH
Confidence 12344566666666666666666666666543 22 124567788889999999999
Q ss_pred HHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHHHHHHH
Q 036198 252 EAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLE 331 (499)
Q Consensus 252 ~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~ 331 (499)
+|.+.|+++.+.. +.+..+|..+...+...|++++|...|+++.+.+ +.+...+..+...+...|++++|...++
T Consensus 153 ~A~~~~~~al~~~----p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~ 227 (388)
T 1w3b_A 153 EAKACYLKAIETQ----PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYL 227 (388)
T ss_dssp HHHHHHHHHHHHC----TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHhC----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 9999999999875 4468899999999999999999999999999875 4467788899999999999999999999
Q ss_pred HHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcChhhHHHHHHHHHhcCCchHHHHHHHHHhHCCCCCC
Q 036198 332 EMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQD 411 (499)
Q Consensus 332 ~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~ 411 (499)
+...... .+..++..+...+.+.|++++|...|+++.+.+. .+..+|..+..++.+.|++++|.+.++++.+. .+.+
T Consensus 228 ~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-~p~~ 304 (388)
T 1w3b_A 228 RALSLSP-NHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQP-HFPDAYCNLANALKEKGSVAEAEDCYNTALRL-CPTH 304 (388)
T ss_dssp HHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCS-SCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH-CTTC
T ss_pred HHHhhCc-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-Cccc
Confidence 9887643 2578899999999999999999999999998642 34678999999999999999999999999876 3457
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcChhHHHHHHHH
Q 036198 412 VDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHMRKFYNPVIARRLALN 488 (499)
Q Consensus 412 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~ 488 (499)
..++..+...+...|++++|...++++.+.. +.+..++..+..+|.+.|++++|.+.++++.+..|......+.+.
T Consensus 305 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~a~~~lg 380 (388)
T 1w3b_A 305 ADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMG 380 (388)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHhHH
Confidence 8899999999999999999999999998764 346889999999999999999999999999998777665555443
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.92 E-value=4.1e-21 Score=185.09 Aligned_cols=353 Identities=11% Similarity=-0.001 Sum_probs=285.6
Q ss_pred cchHHHHHHHHHhccCCCchHHHHHhhCC-----CCCCHHHHHHH--HHccCCChHHHHHHHHHhhcCCCCCCCHHHHHH
Q 036198 48 VSDVAKLYEAIIDNSNAYDNMEKALDSLG-----VPLTTDSVVGV--LQRFQFEEKIAFRFFMWAGHQDNYAHEPLAYNL 120 (499)
Q Consensus 48 ~~~~~~~~~~l~~~~~~~~~~~~al~~~~-----~~~~~~~~~~~--l~~~~~~~~~a~~~f~~~~~~~~~~~~~~~~~~ 120 (499)
.|.+...+..+...+...++++++...+. .+..+..+..+ +..-....+.|...|+.+.... +.+..+|..
T Consensus 29 ~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~ 106 (388)
T 1w3b_A 29 EPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLK--PDFIDGYIN 106 (388)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC--cchHHHHHH
Confidence 34445566667777777888888866441 23333333222 2223455678999999875431 225678999
Q ss_pred HHHHHhcchhhhhhHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhCCChHHHHHHH
Q 036198 121 MIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLMILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETIC 200 (499)
Q Consensus 121 li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 200 (499)
+..++. +.|++++|...|+++.+.. +.+...+..+...+...|++++|.+.|
T Consensus 107 l~~~~~----~~g~~~~A~~~~~~al~~~------------------------p~~~~~~~~l~~~~~~~g~~~~A~~~~ 158 (388)
T 1w3b_A 107 LAAALV----AAGDMEGAVQAYVSALQYN------------------------PDLYCVRSDLGNLLKALGRLEEAKACY 158 (388)
T ss_dssp HHHHHH----HHSCSSHHHHHHHHHHHHC------------------------TTCTHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred HHHHHH----HcCCHHHHHHHHHHHHHhC------------------------CCcHHHHHHHHHHHHHccCHHHHHHHH
Confidence 999999 9999999999999998775 234567888999999999999999999
Q ss_pred HHhhcCCCCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCCCCHHHHHHHHH
Q 036198 201 KRVKNKVKPNANTYNILGMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIV 280 (499)
Q Consensus 201 ~~m~~~~~p~~~~~~~la~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~ 280 (499)
+++.+. .+-+..+|..+...+.+.|++++|...|+++.+.+ +.+...|..+..
T Consensus 159 ~~al~~-----------------------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~----p~~~~~~~~lg~ 211 (388)
T 1w3b_A 159 LKAIET-----------------------QPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD----PNFLDAYINLGN 211 (388)
T ss_dssp HHHHHH-----------------------CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC----TTCHHHHHHHHH
T ss_pred HHHHHh-----------------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC----CCcHHHHHHHHH
Confidence 987652 12257889999999999999999999999999975 456788999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHH
Q 036198 281 ALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDE 360 (499)
Q Consensus 281 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~ 360 (499)
.+...|++++|...|++..+.. +.+..++..+...+.+.|++++|.+.|+++.+.+.. +..+|..+...+.+.|++++
T Consensus 212 ~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~ 289 (388)
T 1w3b_A 212 VLKEARIFDRAVAAYLRALSLS-PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPH-FPDAYCNLANALKEKGSVAE 289 (388)
T ss_dssp HHHTTTCTTHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSS-CHHHHHHHHHHHHHHSCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHhhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHH
Confidence 9999999999999999998764 346788999999999999999999999999987533 57789999999999999999
Q ss_pred HHHHHHHHHHCCCCcChhhHHHHHHHHHhcCCchHHHHHHHHHhHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 036198 361 ALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVN 440 (499)
Q Consensus 361 a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 440 (499)
|...|+++.+.. +.+..++..+...+...|++++|.+.++++.+.. +.+..++..+...|.+.|++++|...++++.+
T Consensus 290 A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 367 (388)
T 1w3b_A 290 AEDCYNTALRLC-PTHADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIR 367 (388)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHhhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 999999998864 4577899999999999999999999999998752 34678899999999999999999999999997
Q ss_pred CCCCCCHHHHHHHHHHHHhcCC
Q 036198 441 KGLKLPYRKFDSYLMQLSVIGD 462 (499)
Q Consensus 441 ~~~~p~~~~~~~ll~~~~~~g~ 462 (499)
... -+...|..+...+...|+
T Consensus 368 ~~p-~~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 368 ISP-TFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp TCT-TCHHHHHHHHHHHHHTCC
T ss_pred hCC-CCHHHHHhHHHHHHHccC
Confidence 642 356677777777666553
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.90 E-value=1.8e-20 Score=184.22 Aligned_cols=313 Identities=10% Similarity=-0.005 Sum_probs=264.8
Q ss_pred CHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhCCCh
Q 036198 114 EPLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLMILKQYTEKIKVKTQPEINALNLLLDALCKCGLV 193 (499)
Q Consensus 114 ~~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 193 (499)
+...+..+...+. +.|++++|..+|+++.... +.+..+|..+..++...|++
T Consensus 25 ~~~~~~~~~~~~~----~~g~~~~A~~~~~~~l~~~------------------------p~~~~~~~~l~~~~~~~g~~ 76 (450)
T 2y4t_A 25 DVEKHLELGKKLL----AAGQLADALSQFHAAVDGD------------------------PDNYIAYYRRATVFLAMGKS 76 (450)
T ss_dssp HHHHHHHHHHHHH----HTTCHHHHHHHHHHHHHHC------------------------TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHH----HCCCHHHHHHHHHHHHHhC------------------------CccHHHHHHHHHHHHHCCCH
Confidence 6778889999999 9999999999999998765 35788999999999999999
Q ss_pred HHHHHHHHHhhcCCCCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCCCCH-
Q 036198 194 DYAETICKRVKNKVKPNANTYNILGMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTA- 272 (499)
Q Consensus 194 ~~A~~~~~~m~~~~~p~~~~~~~la~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~p~~- 272 (499)
++|.+.|+++.+. .+.+...+..+..+|.+.|++++|.+.|+++.+.. +.+.
T Consensus 77 ~~A~~~~~~al~~-----------------------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----~~~~~ 129 (450)
T 2y4t_A 77 KAALPDLTKVIQL-----------------------KMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSN----PSENE 129 (450)
T ss_dssp HHHHHHHHHHHHH-----------------------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC----CCHHH
T ss_pred HHHHHHHHHHHhc-----------------------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC----CCChh
Confidence 9999999988652 12357788999999999999999999999999865 2334
Q ss_pred --HHHHHHH------------HHHHHcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 036198 273 --KTYAIMI------------VALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGY 338 (499)
Q Consensus 273 --~~~~~ll------------~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~ 338 (499)
..+..+. ..+...|++++|...|+++.+.. +.+...+..+..+|.+.|++++|.+.|+.+.+..
T Consensus 130 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~- 207 (450)
T 2y4t_A 130 EKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK- 207 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-
Confidence 5665554 44889999999999999999864 4578889999999999999999999999998763
Q ss_pred CCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcC-hhhHHHH------------HHHHHhcCCchHHHHHHHHHhH
Q 036198 339 PPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPS-VQTYNML------------ISMYFELGEPDGAFETWHEMDK 405 (499)
Q Consensus 339 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~-~~~~~~l------------i~~~~~~~~~~~a~~~~~~m~~ 405 (499)
+.+..+|..+...|...|++++|...|+++.+.. |+ ...+..+ ...|...|++++|.+.|+.+.+
T Consensus 208 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~ 285 (450)
T 2y4t_A 208 NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD--QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMK 285 (450)
T ss_dssp CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 3468899999999999999999999999998753 44 3444444 7889999999999999999987
Q ss_pred CCCCCC-----HHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcChh
Q 036198 406 RGCAQD-----VDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHMRKFYNPV 480 (499)
Q Consensus 406 ~~~~p~-----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~ 480 (499)
. .|+ ...|..+...+.+.|++++|...++++.+.. +.+...|..+..+|...|++++|.+.++++.+..+..
T Consensus 286 ~--~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~ 362 (450)
T 2y4t_A 286 T--EPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNEND 362 (450)
T ss_dssp H--CCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSC
T ss_pred c--CCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcch
Confidence 5 344 4578889999999999999999999998775 3478899999999999999999999999999988776
Q ss_pred HHHHHHHH
Q 036198 481 IARRLALN 488 (499)
Q Consensus 481 ~~~~~~~~ 488 (499)
..-...+.
T Consensus 363 ~~~~~~l~ 370 (450)
T 2y4t_A 363 QQIREGLE 370 (450)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55544443
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.88 E-value=5.2e-19 Score=173.80 Aligned_cols=350 Identities=12% Similarity=0.018 Sum_probs=267.8
Q ss_pred CcchHHHHHHHHHhccCCCchHHHHHhhCCCCCCHHHHHHHHHccCCChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHh
Q 036198 47 SVSDVAKLYEAIIDNSNAYDNMEKALDSLGVPLTTDSVVGVLQRFQFEEKIAFRFFMWAGHQDNYAHEPLAYNLMIDILS 126 (499)
Q Consensus 47 ~~~~~~~~~~~l~~~~~~~~~~~~al~~~~~~~~~~~~~~~l~~~~~~~~~a~~~f~~~~~~~~~~~~~~~~~~li~~~~ 126 (499)
..|.+...+..+...+.+.|++.+|+ .+|+.+... .+.+..+|..+...+.
T Consensus 21 ~~p~~~~~~~~~~~~~~~~g~~~~A~---------------------------~~~~~~l~~--~p~~~~~~~~l~~~~~ 71 (450)
T 2y4t_A 21 QSMADVEKHLELGKKLLAAGQLADAL---------------------------SQFHAAVDG--DPDNYIAYYRRATVFL 71 (450)
T ss_dssp --CHHHHHHHHHHHHHHHTTCHHHHH---------------------------HHHHHHHHH--CTTCHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHCCCHHHHH---------------------------HHHHHHHHh--CCccHHHHHHHHHHHH
Confidence 44555566666666666666665554 444443321 1236889999999999
Q ss_pred cchhhhhhHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHhhcC
Q 036198 127 STKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLMILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNK 206 (499)
Q Consensus 127 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 206 (499)
..|++++|...|+++.+.+ +.+..++..+...|.+.|++++|.+.|+++.+.
T Consensus 72 ----~~g~~~~A~~~~~~al~~~------------------------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 123 (450)
T 2y4t_A 72 ----AMGKSKAALPDLTKVIQLK------------------------MDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKS 123 (450)
T ss_dssp ----HTTCHHHHHHHHHHHHHHC------------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS
T ss_pred ----HCCCHHHHHHHHHHHHhcC------------------------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 9999999999999998876 246779999999999999999999999998774
Q ss_pred CCCCh---hhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHH
Q 036198 207 VKPNA---NTYNILGMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALV 283 (499)
Q Consensus 207 ~~p~~---~~~~~la~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~ 283 (499)
.+.+. ..+..++.-. ....+..+...+.+.|++++|+..|+++.+.. +.+..++..+..+|.
T Consensus 124 ~~~~~~~~~~~~~l~~~~-----------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~----~~~~~~~~~l~~~~~ 188 (450)
T 2y4t_A 124 NPSENEEKEAQSQLIKSD-----------EMQRLRSQALNAFGSGDYTAAIAFLDKILEVC----VWDAELRELRAECFI 188 (450)
T ss_dssp CCCHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC----TTCHHHHHHHHHHHH
T ss_pred CCCChhhHHHHHHHHHHH-----------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----CCChHHHHHHHHHHH
Confidence 33333 3332220000 01123344566899999999999999999875 457889999999999
Q ss_pred HcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHH------------HHH
Q 036198 284 QNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCF------------LKV 351 (499)
Q Consensus 284 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l------------i~~ 351 (499)
..|++++|...|+++.+.. +.+..++..+...|...|++++|.+.|+.+.+.... +...+..+ ...
T Consensus 189 ~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~ 266 (450)
T 2y4t_A 189 KEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQD-HKRCFAHYKQVKKLNKLIESAEE 266 (450)
T ss_dssp HTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-hHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999998763 457889999999999999999999999999875322 34445444 788
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCcC-----hhhHHHHHHHHHhcCCchHHHHHHHHHhHCCCCCCHHHHHHHHHHHHhCC
Q 036198 352 LCDNKNGDEALRLYGRMIEVGCWPS-----VQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCS 426 (499)
Q Consensus 352 ~~~~g~~~~a~~~~~~m~~~~~~~~-----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g 426 (499)
+.+.|++++|...|+++.+.. |+ ...+..+..++.+.|++++|...++.+.+.. +.+...|..+..+|...|
T Consensus 267 ~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~~ 343 (450)
T 2y4t_A 267 LIRDGRYTDATSKYESVMKTE--PSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQME-PDNVNALKDRAEAYLIEE 343 (450)
T ss_dssp HHHHTCHHHHHHHHHHHHHHC--CSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred HHHcCCHHHHHHHHHHHHhcC--CcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhc
Confidence 999999999999999998853 44 4578889999999999999999999987752 336889999999999999
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHH------------HHHhcC-----CHHHHHHHHHHHH
Q 036198 427 KVEEACFLLEEVVNKGLKLPYRKFDSYLM------------QLSVIG-----DLGAIHKLSDHMR 474 (499)
Q Consensus 427 ~~~~a~~~~~~m~~~~~~p~~~~~~~ll~------------~~~~~g-----~~~~a~~~~~~m~ 474 (499)
++++|...++++.+.... +...+..+.. .|...| +.+++.+.++++.
T Consensus 344 ~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~~~ 407 (450)
T 2y4t_A 344 MYDEAIQDYETAQEHNEN-DQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLA 407 (450)
T ss_dssp CHHHHHHHHHHHHTTSSS-CHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCcc-hHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHHHHHHHHHHHH
Confidence 999999999999986422 4556655553 244445 5667788888643
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.87 E-value=6.7e-19 Score=175.94 Aligned_cols=352 Identities=10% Similarity=0.015 Sum_probs=272.5
Q ss_pred CChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHHhhhcC
Q 036198 93 FEEKIAFRFFMWAGHQDNYAHEPLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLMILKQYTEKIKVK 172 (499)
Q Consensus 93 ~~~~~a~~~f~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~l~~~~~~~~~~ 172 (499)
...+.|...|+.+.... |+...|..+..++. +.|++++|...++++.+.+
T Consensus 20 g~~~~A~~~~~~al~~~---p~~~~~~~la~~~~----~~g~~~~A~~~~~~al~~~----------------------- 69 (514)
T 2gw1_A 20 KKYDDAIKYYNWALELK---EDPVFYSNLSACYV----SVGDLKKVVEMSTKALELK----------------------- 69 (514)
T ss_dssp SCHHHHHHHHHHHHHHC---CCHHHHHHHHHHHH----HHTCHHHHHHHHHHHHHHC-----------------------
T ss_pred ccHHHHHHHHHHHHhcC---ccHHHHHhHHHHHH----HHhhHHHHHHHHHHHhccC-----------------------
Confidence 34566777777765433 68899999999999 9999999999999998776
Q ss_pred CCCCHHHHHHHHHHHHhCCChHHHHHHHHHhhcCCCCChhhH--------------------------------------
Q 036198 173 TQPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTY-------------------------------------- 214 (499)
Q Consensus 173 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~~~-------------------------------------- 214 (499)
+.+..+|..+..++.+.|++++|...|+++....+++....
T Consensus 70 -p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 148 (514)
T 2gw1_A 70 -PDYSKVLLRRASANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPA 148 (514)
T ss_dssp -SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC-------------------
T ss_pred -hHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChh
Confidence 24567889999999999999999999988765332221111
Q ss_pred -----------------------------------------HHH---------------HHHHHHHHHH-----cCC---
Q 036198 215 -----------------------------------------NIL---------------GMQTLEEMIQ-----MGH--- 230 (499)
Q Consensus 215 -----------------------------------------~~l---------------a~~~~~~m~~-----~g~--- 230 (499)
... |...++++.+ ...
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 228 (514)
T 2gw1_A 149 KERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNE 228 (514)
T ss_dssp --------CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTT
T ss_pred hHHHhhccCCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCcc
Confidence 000 5666666665 211
Q ss_pred -----CCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc
Q 036198 231 -----APDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLP 305 (499)
Q Consensus 231 -----~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~ 305 (499)
+.+..++..+...+...|++++|...|+++.+.. |+..++..+...+...|++++|...++.+.+.. +.
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-----~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~ 302 (514)
T 2gw1_A 229 DEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELF-----PRVNSYIYMALIMADRNDSTEYYNYFDKALKLD-SN 302 (514)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHC-----CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TT
T ss_pred ccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC-----ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cC
Confidence 2235577788888888999999999999888865 337788888888889999999999998888764 44
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcChhhHHHHHH
Q 036198 306 DVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLIS 385 (499)
Q Consensus 306 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~ 385 (499)
+...+..+...+...|++++|...++...+.... +...+..+...+...|++++|...++++.+.. +.+..++..+..
T Consensus 303 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~ 380 (514)
T 2gw1_A 303 NSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPE-NIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAE 380 (514)
T ss_dssp CTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSS-CSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChh-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHH
Confidence 6677888888899999999999999988876433 56788888888889999999999999988753 235678888889
Q ss_pred HHHhcCCchHHHHHHHHHhHCCC-CCC----HHHHHHHHHHHHh---CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 036198 386 MYFELGEPDGAFETWHEMDKRGC-AQD----VDTYCVMIDGLFD---CSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQL 457 (499)
Q Consensus 386 ~~~~~~~~~~a~~~~~~m~~~~~-~p~----~~~~~~li~~~~~---~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~ 457 (499)
.|...|++++|...++.+.+... .++ ...+..+...+.. .|++++|...++++.+.. +.+..++..+..+|
T Consensus 381 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 459 (514)
T 2gw1_A 381 ILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD-PRSEQAKIGLAQMK 459 (514)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHH
Confidence 99999999999999988865421 111 3478888888888 999999999999988765 33677888889999
Q ss_pred HhcCCHHHHHHHHHHHHhhcChhHHHH
Q 036198 458 SVIGDLGAIHKLSDHMRKFYNPVIARR 484 (499)
Q Consensus 458 ~~~g~~~~a~~~~~~m~~~~~~~~~~~ 484 (499)
.+.|++++|.+.+++..+..+....-.
T Consensus 460 ~~~g~~~~A~~~~~~a~~~~~~~~~~~ 486 (514)
T 2gw1_A 460 LQQEDIDEAITLFEESADLARTMEEKL 486 (514)
T ss_dssp HHTTCHHHHHHHHHHHHHHCSSHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHhccccHHHH
Confidence 999999999999999998877654433
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.85 E-value=1.3e-17 Score=158.09 Aligned_cols=317 Identities=9% Similarity=-0.025 Sum_probs=260.0
Q ss_pred CHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhCCCh
Q 036198 114 EPLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLMILKQYTEKIKVKTQPEINALNLLLDALCKCGLV 193 (499)
Q Consensus 114 ~~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 193 (499)
|+..+..+...+. ..|++++|...|+++.... +.+..++..+...+...|++
T Consensus 2 ~~~~~~~~~~~~~----~~g~~~~A~~~~~~~l~~~------------------------p~~~~~~~~~a~~~~~~~~~ 53 (359)
T 3ieg_A 2 DVEKHLELGKKLL----AAGQLADALSQFHAAVDGD------------------------PDNYIAYYRRATVFLAMGKS 53 (359)
T ss_dssp HHHHHHHHHHHHH----HTTCHHHHHHHHHHHHHHC------------------------TTCHHHHHHHHHHHHHHTCH
T ss_pred cHHHHHHHHHHHH----HcCCHHHHHHHHHHHHhhC------------------------cccHHHHHHHHHHHHHccCH
Confidence 4566777888888 9999999999999998875 34677999999999999999
Q ss_pred HHHHHHHHHhhcCCCCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCC---C
Q 036198 194 DYAETICKRVKNKVKPNANTYNILGMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISS---P 270 (499)
Q Consensus 194 ~~A~~~~~~m~~~~~p~~~~~~~la~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~---p 270 (499)
++|...|+++.+. .+-+...+..+..++...|++++|...|++..+.. + .
T Consensus 54 ~~A~~~~~~~~~~-----------------------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~----~~~~~ 106 (359)
T 3ieg_A 54 KAALPDLTKVIAL-----------------------KMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSN----PSEQE 106 (359)
T ss_dssp HHHHHHHHHHHHH-----------------------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSC----CCHHH
T ss_pred HHHHHHHHHHHHh-----------------------CCCcchHHHHHHHHHHHcCChHHHHHHHHHHHhcC----CcccC
Confidence 9999999987641 12266788999999999999999999999999864 2 2
Q ss_pred CHHHHHHH------------HHHHHHcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 036198 271 TAKTYAIM------------IVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGY 338 (499)
Q Consensus 271 ~~~~~~~l------------l~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~ 338 (499)
+...+..+ ...+...|++++|...++++.+.. +.+...+..+...+...|++++|.+.++...+..
T Consensus 107 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~- 184 (359)
T 3ieg_A 107 EKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK- 184 (359)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-
Confidence 44555544 578899999999999999999874 4577889999999999999999999999998875
Q ss_pred CCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcChhhHH------------HHHHHHHhcCCchHHHHHHHHHhHC
Q 036198 339 PPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYN------------MLISMYFELGEPDGAFETWHEMDKR 406 (499)
Q Consensus 339 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~------------~li~~~~~~~~~~~a~~~~~~m~~~ 406 (499)
+.+..++..+...+...|++++|...+++..+... .+...+. .+...+.+.|++++|.+.++...+.
T Consensus 185 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~ 263 (359)
T 3ieg_A 185 SDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQ-DHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT 263 (359)
T ss_dssp SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc-cchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 34778999999999999999999999999987542 2233332 2366788999999999999998875
Q ss_pred CCCCCH----HHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcChhHH
Q 036198 407 GCAQDV----DTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHMRKFYNPVIA 482 (499)
Q Consensus 407 ~~~p~~----~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~ 482 (499)
... +. ..+..+...+...|++++|...+++..+.. +.+..++..+..++...|++++|.+.+++..+..|....
T Consensus 264 ~~~-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~ 341 (359)
T 3ieg_A 264 EPS-VAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQ 341 (359)
T ss_dssp CCS-SHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHH
T ss_pred CCC-chHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChH
Confidence 322 22 235557788999999999999999999875 347889999999999999999999999999999887666
Q ss_pred HHHHHHHh
Q 036198 483 RRLALNQK 490 (499)
Q Consensus 483 ~~~~~~~~ 490 (499)
-...+...
T Consensus 342 ~~~~l~~~ 349 (359)
T 3ieg_A 342 IREGLEKA 349 (359)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55554443
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.83 E-value=9.6e-18 Score=167.54 Aligned_cols=339 Identities=10% Similarity=0.006 Sum_probs=273.1
Q ss_pred HHHHHHHHHHHhcchhhhhhHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhCCChH
Q 036198 115 PLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLMILKQYTEKIKVKTQPEINALNLLLDALCKCGLVD 194 (499)
Q Consensus 115 ~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 194 (499)
...+......+. +.|++++|...|+++.... |+..+|..+..++.+.|+++
T Consensus 6 a~~~~~~g~~~~----~~g~~~~A~~~~~~al~~~-------------------------p~~~~~~~la~~~~~~g~~~ 56 (514)
T 2gw1_A 6 ALALKDKGNQFF----RNKKYDDAIKYYNWALELK-------------------------EDPVFYSNLSACYVSVGDLK 56 (514)
T ss_dssp HHHHHHHHHHHH----HTSCHHHHHHHHHHHHHHC-------------------------CCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHHHH----HhccHHHHHHHHHHHHhcC-------------------------ccHHHHHhHHHHHHHHhhHH
Confidence 345666677777 8999999999999999876 78889999999999999999
Q ss_pred HHHHHHHHhhcCCCCChhhHHHH------------HHHHHHHHHHcCCCC------------------------------
Q 036198 195 YAETICKRVKNKVKPNANTYNIL------------GMQTLEEMIQMGHAP------------------------------ 232 (499)
Q Consensus 195 ~A~~~~~~m~~~~~p~~~~~~~l------------a~~~~~~m~~~g~~p------------------------------ 232 (499)
+|.+.|+++.+..+.+...|..+ |...|+.+...+...
T Consensus 57 ~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 136 (514)
T 2gw1_A 57 KVVEMSTKALELKPDYSKVLLRRASANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTA 136 (514)
T ss_dssp HHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC-------
T ss_pred HHHHHHHHHhccChHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999987666666666666 788888877654311
Q ss_pred ------------------------------------------------CHHHHHHHHHHHHh---cCCHhHHHHHHHHHH
Q 036198 233 ------------------------------------------------DNFTYNTAIDTFCK---ARMVTEAADLFEFMR 261 (499)
Q Consensus 233 ------------------------------------------------~~~~~~~li~~~~~---~g~~~~a~~~~~~m~ 261 (499)
+...+......+.. .|++++|..+|+++.
T Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 216 (514)
T 2gw1_A 137 TATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAA 216 (514)
T ss_dssp --------------------CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHH
T ss_pred HHhhhhccCChhhHHHhhccCCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHH
Confidence 13333333343443 899999999999998
Q ss_pred H-----cCCCCC-----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHHHHHHH
Q 036198 262 T-----KGSTIS-----SPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLE 331 (499)
Q Consensus 262 ~-----~~~~~~-----~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~ 331 (499)
+ ...... +.+..++..+...+...|++++|...|+++.+.. |+...+..+...+...|++++|.+.++
T Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~ 294 (514)
T 2gw1_A 217 RLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELF--PRVNSYIYMALIMADRNDSTEYYNYFD 294 (514)
T ss_dssp HHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHTSSCCTTGGGHHH
T ss_pred HHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--ccHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 8 310000 1235678889999999999999999999999875 348888999999999999999999999
Q ss_pred HHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcChhhHHHHHHHHHhcCCchHHHHHHHHHhHCCCCCC
Q 036198 332 EMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQD 411 (499)
Q Consensus 332 ~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~ 411 (499)
.+.+... .+..++..+...+...|++++|...++++.+... .+...+..+...|...|++++|...++.+.+.. +.+
T Consensus 295 ~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~ 371 (514)
T 2gw1_A 295 KALKLDS-NNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDP-ENIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEA 371 (514)
T ss_dssp HHHTTCT-TCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCS-SCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTC
T ss_pred HHhhcCc-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCh-hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccC
Confidence 9988743 3677899999999999999999999999998653 356788899999999999999999999988752 235
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCC-CC----HHHHHHHHHHHHh---cCCHHHHHHHHHHHHhhcChhHHH
Q 036198 412 VDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLK-LP----YRKFDSYLMQLSV---IGDLGAIHKLSDHMRKFYNPVIAR 483 (499)
Q Consensus 412 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~-p~----~~~~~~ll~~~~~---~g~~~~a~~~~~~m~~~~~~~~~~ 483 (499)
...+..+...+...|++++|...++++.+.... ++ ...+..+..++.. .|++++|.+.++++.+..+.....
T Consensus 372 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~ 451 (514)
T 2gw1_A 372 PEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQA 451 (514)
T ss_dssp SHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHH
Confidence 678889999999999999999999998865322 12 3488899999999 999999999999999987765544
Q ss_pred HHHH
Q 036198 484 RLAL 487 (499)
Q Consensus 484 ~~~~ 487 (499)
.+.+
T Consensus 452 ~~~l 455 (514)
T 2gw1_A 452 KIGL 455 (514)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4433
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.82 E-value=5.8e-17 Score=162.87 Aligned_cols=347 Identities=11% Similarity=0.048 Sum_probs=264.5
Q ss_pred HHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHHhhhcCCCC
Q 036198 96 KIAFRFFMWAGHQDNYAHEPLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLMILKQYTEKIKVKTQP 175 (499)
Q Consensus 96 ~~a~~~f~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 175 (499)
+.|...|+.+.... +.++..|..+...+. +.|++++|.+.++++.+.+ +.
T Consensus 42 ~~A~~~~~~al~~~--p~~~~~~~~la~~~~----~~g~~~~A~~~~~~al~~~------------------------p~ 91 (537)
T 3fp2_A 42 NEAIKYYQYAIELD--PNEPVFYSNISACYI----STGDLEKVIEFTTKALEIK------------------------PD 91 (537)
T ss_dssp C-CHHHHHHHHHHC--TTCHHHHHHHHHHHH----HHTCHHHHHHHHHHHHHHC------------------------TT
T ss_pred HHHHHHHHHHHhhC--CCCcHHHHHHHHHHH----HcCCHHHHHHHHHHHHhcC------------------------Cc
Confidence 34555555543322 236788888888888 8999999999999988776 24
Q ss_pred CHHHHHHHHHHHHhCCChHHHHHHHHHhhcCC-------------------------------------CCChhh-----
Q 036198 176 EINALNLLLDALCKCGLVDYAETICKRVKNKV-------------------------------------KPNANT----- 213 (499)
Q Consensus 176 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-------------------------------------~p~~~~----- 213 (499)
+..++..+...+...|++++|.+.|+.+.... .|+...
T Consensus 92 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 171 (537)
T 3fp2_A 92 HSKALLRRASANESLGNFTDAMFDLSVLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFF 171 (537)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHC-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHH
Confidence 56778888888888888888888886442110 011000
Q ss_pred -------------------------HHHH--------------------HHHHHHHHHHcCCCCC-------HHHHHHHH
Q 036198 214 -------------------------YNIL--------------------GMQTLEEMIQMGHAPD-------NFTYNTAI 241 (499)
Q Consensus 214 -------------------------~~~l--------------------a~~~~~~m~~~g~~p~-------~~~~~~li 241 (499)
...+ |..+++.+.+.... + ..++..+.
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~~~~~g 250 (537)
T 3fp2_A 172 GIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTV-DDPLRENAALALCYTG 250 (537)
T ss_dssp HTSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CC-CHHHHHHHHHHHHHHH
T ss_pred HhcChHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCC-cchhhHHHHHHHHHHH
Confidence 0000 55566666654332 2 23567777
Q ss_pred HHHHhcCCHhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcC
Q 036198 242 DTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAG 321 (499)
Q Consensus 242 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g 321 (499)
..+...|++++|.+.|++..+.. |+..++..+...+...|++++|...+++..+.. +.+..++..+...+...|
T Consensus 251 ~~~~~~~~~~~A~~~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~ 324 (537)
T 3fp2_A 251 IFHFLKNNLLDAQVLLQESINLH-----PTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQ 324 (537)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-----CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred HHHHhcccHHHHHHHHHHHHhcC-----CCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcC
Confidence 88899999999999999999865 558889999999999999999999999998874 456788999999999999
Q ss_pred CHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcChhhHHHHHHHHHhcCCchHHHHHHH
Q 036198 322 KVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWH 401 (499)
Q Consensus 322 ~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~ 401 (499)
++++|.+.++...+.... +...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|.+.++
T Consensus 325 ~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 402 (537)
T 3fp2_A 325 DYKNAKEDFQKAQSLNPE-NVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYD 402 (537)
T ss_dssp CHHHHHHHHHHHHHHCTT-CSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 999999999999876433 56788899999999999999999999998864 2456788999999999999999999999
Q ss_pred HHhHCC-----CCCCHHHHHHHHHHHHhC----------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 036198 402 EMDKRG-----CAQDVDTYCVMIDGLFDC----------SKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAI 466 (499)
Q Consensus 402 ~m~~~~-----~~p~~~~~~~li~~~~~~----------g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a 466 (499)
.+.+.. .......+......+... |++++|...++++.+... .+...+..+..+|.+.|++++|
T Consensus 403 ~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p-~~~~~~~~l~~~~~~~g~~~~A 481 (537)
T 3fp2_A 403 IAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDP-RSEQAKIGLAQLKLQMEKIDEA 481 (537)
T ss_dssp HHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhccHHHH
Confidence 986532 112223344555667777 999999999999998753 4678899999999999999999
Q ss_pred HHHHHHHHhhcChhHH
Q 036198 467 HKLSDHMRKFYNPVIA 482 (499)
Q Consensus 467 ~~~~~~m~~~~~~~~~ 482 (499)
.+.+++..+..+....
T Consensus 482 ~~~~~~al~~~~~~~~ 497 (537)
T 3fp2_A 482 IELFEDSAILARTMDE 497 (537)
T ss_dssp HHHHHHHHHHC--CHH
T ss_pred HHHHHHHHHhCCCcHH
Confidence 9999999988765443
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.81 E-value=6.5e-17 Score=151.56 Aligned_cols=294 Identities=9% Similarity=-0.055 Sum_probs=233.0
Q ss_pred CCCHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhCC
Q 036198 112 AHEPLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLMILKQYTEKIKVKTQPEINALNLLLDALCKCG 191 (499)
Q Consensus 112 ~~~~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~li~~~~~~g 191 (499)
+.+...+..+...+. ..|++++|..+++++.+.. +.+...+..++..+...|
T Consensus 19 ~~~~~~~~~~a~~~~----~~g~~~~A~~~~~~~l~~~------------------------p~~~~~~~~~~~~~~~~~ 70 (330)
T 3hym_B 19 QENLDVVVSLAERHY----YNCDFKMCYKLTSVVMEKD------------------------PFHASCLPVHIGTLVELN 70 (330)
T ss_dssp -CCCTTHHHHHHHHH----HTTCHHHHHHHHHHHHHHC------------------------TTCTTTHHHHHHHHHHHT
T ss_pred hhhHHHHHHHHHHHH----HcCCHHHHHHHHHHHHHcC------------------------CCChhhHHHHHHHHHHhh
Confidence 345666777778888 8899999999999988776 235567777888888999
Q ss_pred ChHHHHHHHHHhhcCCCCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC-CHhHHHHHHHHHHHcCCCCCCC
Q 036198 192 LVDYAETICKRVKNKVKPNANTYNILGMQTLEEMIQMGHAPDNFTYNTAIDTFCKAR-MVTEAADLFEFMRTKGSTISSP 270 (499)
Q Consensus 192 ~~~~A~~~~~~m~~~~~p~~~~~~~la~~~~~~m~~~g~~p~~~~~~~li~~~~~~g-~~~~a~~~~~~m~~~~~~~~~p 270 (499)
++++|..+++++.+. .+.+...+..+...+...| ++++|.+.|++..+.. +.
T Consensus 71 ~~~~A~~~~~~~~~~-----------------------~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~----~~ 123 (330)
T 3hym_B 71 KANELFYLSHKLVDL-----------------------YPSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLE----KT 123 (330)
T ss_dssp CHHHHHHHHHHHHHH-----------------------CTTSTHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTC----TT
T ss_pred hHHHHHHHHHHHHHh-----------------------CcCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC----Cc
Confidence 999999998887642 1225677888889999999 8999999999998875 34
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHH
Q 036198 271 TAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLK 350 (499)
Q Consensus 271 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~ 350 (499)
+...|..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|.+.++...+... .+...+..+..
T Consensus 124 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~l~~ 201 (330)
T 3hym_B 124 YGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAP-EDPFVMHEVGV 201 (330)
T ss_dssp CTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCT-TCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCC-CChHHHHHHHH
Confidence 57788899999999999999999999998764 33456677788899999999999999999887753 36788888999
Q ss_pred HHHHcCCHHHHHHHHHHHHHCC--------CCcChhhHHHHHHHHHhcCCchHHHHHHHHHhHCCCCCCHHHHHHHHHHH
Q 036198 351 VLCDNKNGDEALRLYGRMIEVG--------CWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGL 422 (499)
Q Consensus 351 ~~~~~g~~~~a~~~~~~m~~~~--------~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~ 422 (499)
.+...|++++|...+++..+.. ......++..+..+|...|++++|.+.+++..+.. +.+...+..+...+
T Consensus 202 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 280 (330)
T 3hym_B 202 VAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLI-PQNASTYSAIGYIH 280 (330)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhC-ccchHHHHHHHHHH
Confidence 9999999999999999887631 12335688888999999999999999999887753 23567888888899
Q ss_pred HhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH-HhcCCHH
Q 036198 423 FDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQL-SVIGDLG 464 (499)
Q Consensus 423 ~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~-~~~g~~~ 464 (499)
...|++++|...+++..+.. +.+...+..+..++ ...|+.+
T Consensus 281 ~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 281 SLMGNFENAVDYFHTALGLR-RDDTFSVTMLGHCIEMYIGDSE 322 (330)
T ss_dssp HHHTCHHHHHHHHHTTTTTC-SCCHHHHHHHHHHHHTTTTC--
T ss_pred HHhccHHHHHHHHHHHHccC-CCchHHHHHHHHHHHHHhCchh
Confidence 99999999999999887665 23667777777777 4566654
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.80 E-value=6.1e-17 Score=151.74 Aligned_cols=286 Identities=8% Similarity=-0.073 Sum_probs=240.8
Q ss_pred CCCCHHHHHHHHHHHHhCCChHHHHHHHHHhhcCCCCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhH
Q 036198 173 TQPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTE 252 (499)
Q Consensus 173 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~~~~~la~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~ 252 (499)
.+.+...+..+...+...|++++|.++|+++... .+.+...+..++.++...|++++
T Consensus 18 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~-----------------------~p~~~~~~~~~~~~~~~~~~~~~ 74 (330)
T 3hym_B 18 LQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEK-----------------------DPFHASCLPVHIGTLVELNKANE 74 (330)
T ss_dssp --CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHH-----------------------CTTCTTTHHHHHHHHHHHTCHHH
T ss_pred chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-----------------------CCCChhhHHHHHHHHHHhhhHHH
Confidence 3456778888999999999999999999988652 12245566778888999999999
Q ss_pred HHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHHHHHHH
Q 036198 253 AADLFEFMRTKGSTISSPTAKTYAIMIVALVQND-RMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLE 331 (499)
Q Consensus 253 a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~-~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~ 331 (499)
|..+++++.+.. +.+...|..+...+...| ++++|...|++..+.. +.+...+..+...+...|++++|.+.++
T Consensus 75 A~~~~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 149 (330)
T 3hym_B 75 LFYLSHKLVDLY----PSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYF 149 (330)
T ss_dssp HHHHHHHHHHHC----TTSTHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHhC----cCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHH
Confidence 999999999875 456788999999999999 9999999999998764 4457788999999999999999999999
Q ss_pred HHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcChhhHHHHHHHHHhcCCchHHHHHHHHHhHCC----
Q 036198 332 EMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRG---- 407 (499)
Q Consensus 332 ~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~---- 407 (499)
...+.... +...+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|...++...+..
T Consensus 150 ~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~ 227 (330)
T 3hym_B 150 TAAQLMKG-CHLPMLYIGLEYGLTNNSKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIG 227 (330)
T ss_dssp HHHHHTTT-CSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTS
T ss_pred HHHHhccc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhcc
Confidence 99876433 45677789999999999999999999998864 3457889999999999999999999999887631
Q ss_pred ----CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcChhHHH
Q 036198 408 ----CAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHMRKFYNPVIAR 483 (499)
Q Consensus 408 ----~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~ 483 (499)
...+..++..+...+...|++++|...+++..+... .+...+..+..++.+.|++++|.+.+++..+..+.....
T Consensus 228 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 306 (330)
T 3hym_B 228 NEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIP-QNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFS 306 (330)
T ss_dssp CSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHH
T ss_pred ccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCc-cchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHH
Confidence 133457889999999999999999999999998763 367889999999999999999999999999988776655
Q ss_pred HHHHHH
Q 036198 484 RLALNQ 489 (499)
Q Consensus 484 ~~~~~~ 489 (499)
...+..
T Consensus 307 ~~~l~~ 312 (330)
T 3hym_B 307 VTMLGH 312 (330)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555543
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.79 E-value=1.9e-19 Score=182.28 Aligned_cols=119 Identities=17% Similarity=0.184 Sum_probs=86.7
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHH---HcCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHH
Q 036198 271 TAKTYAIMIVALVQNDRMEECFSLLGHMI---NSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNC 347 (499)
Q Consensus 271 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~---~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ 347 (499)
-..|||++|++|++.|++++|.++|.+|. +.|+.||..|||+||++||+.|++++|.++|++|.+.|+.||..|||+
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYnt 205 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence 34577777777777777777777776655 346777777777777777777777777777777777777777777777
Q ss_pred HHHHHHHcCCH-HHHHHHHHHHHHCCCCcChhhHHHHHHHHHh
Q 036198 348 FLKVLCDNKNG-DEALRLYGRMIEVGCWPSVQTYNMLISMYFE 389 (499)
Q Consensus 348 li~~~~~~g~~-~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~ 389 (499)
+|.++|+.|+. ++|.++|++|.+.|+.||..+|++++.++.+
T Consensus 206 LI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR 248 (1134)
T 3spa_A 206 ALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDR 248 (1134)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHH
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhH
Confidence 77777777763 5677777777777777777777777765544
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.78 E-value=3e-15 Score=141.83 Aligned_cols=315 Identities=12% Similarity=-0.004 Sum_probs=243.6
Q ss_pred CChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHHhhhcC
Q 036198 93 FEEKIAFRFFMWAGHQDNYAHEPLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLMILKQYTEKIKVK 172 (499)
Q Consensus 93 ~~~~~a~~~f~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~l~~~~~~~~~~ 172 (499)
...+.|...|+.+.... +.+..+|..+...+. ..|++++|...+++..+..
T Consensus 17 g~~~~A~~~~~~~l~~~--p~~~~~~~~~a~~~~----~~~~~~~A~~~~~~~~~~~----------------------- 67 (359)
T 3ieg_A 17 GQLADALSQFHAAVDGD--PDNYIAYYRRATVFL----AMGKSKAALPDLTKVIALK----------------------- 67 (359)
T ss_dssp TCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHH----HHTCHHHHHHHHHHHHHHC-----------------------
T ss_pred CCHHHHHHHHHHHHhhC--cccHHHHHHHHHHHH----HccCHHHHHHHHHHHHHhC-----------------------
Confidence 34456677776654322 236788999999999 9999999999999998765
Q ss_pred CCCCHHHHHHHHHHHHhCCChHHHHHHHHHhhcCCC---CChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 036198 173 TQPEINALNLLLDALCKCGLVDYAETICKRVKNKVK---PNANTYNILGMQTLEEMIQMGHAPDNFTYNTAIDTFCKARM 249 (499)
Q Consensus 173 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~---p~~~~~~~la~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 249 (499)
+.+...+..+...+...|++++|.+.|++..+..+ .+...+..++.- .....+..+...+...|+
T Consensus 68 -~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~-----------~~~~~~~~~a~~~~~~~~ 135 (359)
T 3ieg_A 68 -MDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKA-----------DEMQRLRSQALDAFDGAD 135 (359)
T ss_dssp -TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHTTC
T ss_pred -CCcchHHHHHHHHHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHH-----------HHHHHHHHHHHHHHHccC
Confidence 23667899999999999999999999999876432 222222211000 001123344688999999
Q ss_pred HhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHHHHH
Q 036198 250 VTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKF 329 (499)
Q Consensus 250 ~~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~ 329 (499)
+++|.+.|+++.+.. +.+...+..+...+...|++++|...++...+.. +.+...+..+...+...|++++|.+.
T Consensus 136 ~~~A~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~ 210 (359)
T 3ieg_A 136 YTAAITFLDKILEVC----VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSE 210 (359)
T ss_dssp HHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHHHhC----CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 999999999999875 4578899999999999999999999999999874 55788899999999999999999999
Q ss_pred HHHHHhCCCCCCHhhHH------------HHHHHHHHcCCHHHHHHHHHHHHHCCCCcCh-----hhHHHHHHHHHhcCC
Q 036198 330 LEEMGNKGYPPDIVTYN------------CFLKVLCDNKNGDEALRLYGRMIEVGCWPSV-----QTYNMLISMYFELGE 392 (499)
Q Consensus 330 ~~~m~~~~~~p~~~~~~------------~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~-----~~~~~li~~~~~~~~ 392 (499)
++...+.... +...+. .+...+.+.|++++|...++++.+.. |+. ..+..+..++...|+
T Consensus 211 ~~~a~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~la~~~~~~~~ 287 (359)
T 3ieg_A 211 VRECLKLDQD-HKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE--PSVAEYTVRSKERICHCFSKDEK 287 (359)
T ss_dssp HHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CSSHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHhhCcc-chHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHHHHHHccC
Confidence 9998876422 333333 23666889999999999999998854 332 235567789999999
Q ss_pred chHHHHHHHHHhHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 036198 393 PDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLS 458 (499)
Q Consensus 393 ~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~ 458 (499)
+++|.+.++...+.. +.+..++..+...+...|++++|...++++.+... -+...+..+..+..
T Consensus 288 ~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~~~~l~~~~~ 351 (359)
T 3ieg_A 288 PVEAIRICSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNE-NDQQIREGLEKAQR 351 (359)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCT-TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CChHHHHHHHHHHH
Confidence 999999999998752 33788999999999999999999999999998752 24555555555543
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.77 E-value=4.6e-19 Score=179.56 Aligned_cols=154 Identities=11% Similarity=0.028 Sum_probs=126.7
Q ss_pred CCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHh---CCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcChhh
Q 036198 303 CLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGN---KGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQT 379 (499)
Q Consensus 303 ~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~---~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~ 379 (499)
...-..||++||++||+.|++++|.++|++|.+ .|+.||..|||+||.+||+.|++++|.++|++|.+.|+.||..|
T Consensus 123 ~~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvT 202 (1134)
T 3spa_A 123 LSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLS 202 (1134)
T ss_dssp CCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHH
T ss_pred HHhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHH
Confidence 344567899999999999999999999988764 48899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCc-hHHHHHHHHHhHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC------HHHHHH
Q 036198 380 YNMLISMYFELGEP-DGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLP------YRKFDS 452 (499)
Q Consensus 380 ~~~li~~~~~~~~~-~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~------~~~~~~ 452 (499)
||+||.++++.|+. ++|.++|++|.+.|+.||..+|+.++.++.+ +.+++.++++ .-++.|+ ..+...
T Consensus 203 YntLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR----~~vL~~Vrkv-~P~f~p~~~~~~~~~t~~L 277 (1134)
T 3spa_A 203 YAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDR----ATVLKAVHKV-KPTFSLPPQLPPPVNTSKL 277 (1134)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHH----HHHHHHHGGG-CCCCCCCCCCCCCCCCCTT
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhH----HHHHHHHHHh-CcccCCCCCCcccccchHH
Confidence 99999999999985 7889999999999999999999999876655 3455555555 4455554 445555
Q ss_pred HHHHHHhcC
Q 036198 453 YLMQLSVIG 461 (499)
Q Consensus 453 ll~~~~~~g 461 (499)
|.+.|.+.+
T Consensus 278 L~dl~s~d~ 286 (1134)
T 3spa_A 278 LRDVYAKDG 286 (1134)
T ss_dssp THHHHCCCS
T ss_pred HHHHHccCC
Confidence 556666554
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.77 E-value=1e-16 Score=152.90 Aligned_cols=271 Identities=9% Similarity=-0.041 Sum_probs=224.4
Q ss_pred CHHHHHHHHHHHHhCCChHHHHHHHHHhhcCCCCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHH
Q 036198 176 EINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAAD 255 (499)
Q Consensus 176 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~~~~~la~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~ 255 (499)
+...+..+...+.+.|++++|...|+++.+. .+.+...+..+..++.+.|++++|.+
T Consensus 63 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~-----------------------~p~~~~~~~~l~~~~~~~g~~~~A~~ 119 (368)
T 1fch_A 63 DHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQ-----------------------DPKHMEAWQYLGTTQAENEQELLAIS 119 (368)
T ss_dssp TCSSHHHHHHHHHHTTCHHHHHHHHHHHHHS-----------------------CTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred chHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-----------------------CCCCHHHHHHHHHHHHHCcCHHHHHH
Confidence 4567888999999999999999999988652 22367788999999999999999999
Q ss_pred HHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHhHHH---------------HHHHHHhc
Q 036198 256 LFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKE---------------VLEGMCLA 320 (499)
Q Consensus 256 ~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~---------------ll~~~~~~ 320 (499)
.|+++.+.. +.+..++..+...+...|++++|...++++.+... .+...+.. .+..+...
T Consensus 120 ~~~~al~~~----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (368)
T 1fch_A 120 ALRRCLELK----PDNQTALMALAVSFTNESLQRQACEILRDWLRYTP-AYAHLVTPAEEGAGGAGLGPSKRILGSLLSD 194 (368)
T ss_dssp HHHHHHHHC----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTST-TTGGGCC---------------CTTHHHHHH
T ss_pred HHHHHHhcC----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-CcHHHHHHHHHHhhhhcccHHHHHHHHHhhc
Confidence 999999875 45788999999999999999999999999998642 22222221 24444589
Q ss_pred CCHHHHHHHHHHHHhCCCCC-CHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcChhhHHHHHHHHHhcCCchHHHHH
Q 036198 321 GKVEEAYKFLEEMGNKGYPP-DIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFET 399 (499)
Q Consensus 321 g~~~~a~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~ 399 (499)
|++++|.+.++++.+..... +..++..+...+.+.|++++|...++++.+.. +.+..++..+...|...|++++|...
T Consensus 195 ~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~ 273 (368)
T 1fch_A 195 SLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAA 273 (368)
T ss_dssp HHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 99999999999998764321 47889999999999999999999999998764 24577899999999999999999999
Q ss_pred HHHHhHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCC----------CHHHHHHHHHHHHhcCCHHHHHHH
Q 036198 400 WHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKL----------PYRKFDSYLMQLSVIGDLGAIHKL 469 (499)
Q Consensus 400 ~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p----------~~~~~~~ll~~~~~~g~~~~a~~~ 469 (499)
++++.+.. +.+...+..+...|...|++++|...++++.+..... ...+|..+..+|...|+.++|..+
T Consensus 274 ~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 352 (368)
T 1fch_A 274 YRRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAA 352 (368)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHH
T ss_pred HHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHh
Confidence 99988753 3467889999999999999999999999988653221 268899999999999999999998
Q ss_pred HHHHHhh
Q 036198 470 SDHMRKF 476 (499)
Q Consensus 470 ~~~m~~~ 476 (499)
+.+-.+.
T Consensus 353 ~~~~l~~ 359 (368)
T 1fch_A 353 DARDLST 359 (368)
T ss_dssp HTTCHHH
T ss_pred HHHHHHH
Confidence 8754443
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.76 E-value=1.3e-15 Score=153.14 Aligned_cols=336 Identities=12% Similarity=0.063 Sum_probs=254.0
Q ss_pred HHHHHHHHHHHhcchhhhhhHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhCCChH
Q 036198 115 PLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLMILKQYTEKIKVKTQPEINALNLLLDALCKCGLVD 194 (499)
Q Consensus 115 ~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 194 (499)
...|..+...+. +.|++++|...|+++.... +.+..+|..+..+|.+.|+++
T Consensus 25 a~~~~~~g~~~~----~~g~~~~A~~~~~~al~~~------------------------p~~~~~~~~la~~~~~~g~~~ 76 (537)
T 3fp2_A 25 AVQLKNRGNHFF----TAKNFNEAIKYYQYAIELD------------------------PNEPVFYSNISACYISTGDLE 76 (537)
T ss_dssp HHHHHHHHHHHH----HTTCCC-CHHHHHHHHHHC------------------------TTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHHHH----HhccHHHHHHHHHHHHhhC------------------------CCCcHHHHHHHHHHHHcCCHH
Confidence 455777777888 9999999999999998876 357789999999999999999
Q ss_pred HHHHHHHHhhcCCCCChhhHHHH------------HHHHHHHHHHcC---------------------------------
Q 036198 195 YAETICKRVKNKVKPNANTYNIL------------GMQTLEEMIQMG--------------------------------- 229 (499)
Q Consensus 195 ~A~~~~~~m~~~~~p~~~~~~~l------------a~~~~~~m~~~g--------------------------------- 229 (499)
+|.+.|+++.+..+.+...+..+ |...|+.+....
T Consensus 77 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~ 156 (537)
T 3fp2_A 77 KVIEFTTKALEIKPDHSKALLRRASANESLGNFTDAMFDLSVLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGR 156 (537)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHC-----------CHHHHHHHHHHHHHHHHHCC-----
T ss_pred HHHHHHHHHHhcCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccc
Confidence 99999999987656666666555 555554221000
Q ss_pred ---CCCCHHH------------------------------HHHHHHHHHh--------cCCHhHHHHHHHHHHHcCCCCC
Q 036198 230 ---HAPDNFT------------------------------YNTAIDTFCK--------ARMVTEAADLFEFMRTKGSTIS 268 (499)
Q Consensus 230 ---~~p~~~~------------------------------~~~li~~~~~--------~g~~~~a~~~~~~m~~~~~~~~ 268 (499)
..|+... ...+...+.. .|++++|..+|+++.+..
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~---- 232 (537)
T 3fp2_A 157 GSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSAN---- 232 (537)
T ss_dssp --CCCCCHHHHHHHHHTSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC------
T ss_pred cccccchHhHHHHHHHhcChHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHC----
Confidence 0111111 1111111111 147889999999998765
Q ss_pred CCC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 036198 269 SPT-------AKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPD 341 (499)
Q Consensus 269 ~p~-------~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~ 341 (499)
+.+ ..++..+...+...|++++|...|+...+. .|+...+..+...+...|++++|.+.++...+... .+
T Consensus 233 p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~ 309 (537)
T 3fp2_A 233 TVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLNP-EY 309 (537)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCT-TC
T ss_pred CCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCC-CC
Confidence 222 335677778888999999999999999987 46688888899999999999999999999887643 36
Q ss_pred HhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcChhhHHHHHHHHHhcCCchHHHHHHHHHhHCCCCCCHHHHHHHHHH
Q 036198 342 IVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDG 421 (499)
Q Consensus 342 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~ 421 (499)
..+|..+...+...|++++|...++++.+... .+...+..+..+|...|++++|.+.++++.+.. +.+...+..+...
T Consensus 310 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~ 387 (537)
T 3fp2_A 310 PPTYYHRGQMYFILQDYKNAKEDFQKAQSLNP-ENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEI 387 (537)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHH
Confidence 78899999999999999999999999988642 346788899999999999999999999988763 3356788889999
Q ss_pred HHhCCCHHHHHHHHHHHHHCCC-----CCCHHHHHHHHHHHHhc----------CCHHHHHHHHHHHHhhcChhHHHHHH
Q 036198 422 LFDCSKVEEACFLLEEVVNKGL-----KLPYRKFDSYLMQLSVI----------GDLGAIHKLSDHMRKFYNPVIARRLA 486 (499)
Q Consensus 422 ~~~~g~~~~a~~~~~~m~~~~~-----~p~~~~~~~ll~~~~~~----------g~~~~a~~~~~~m~~~~~~~~~~~~~ 486 (499)
+...|++++|...++++.+... ......+.....++... |++++|.+.+++..+..+....-.+.
T Consensus 388 ~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~ 467 (537)
T 3fp2_A 388 LTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIG 467 (537)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 9999999999999999876431 11222344555677777 99999999999999987765544443
Q ss_pred H
Q 036198 487 L 487 (499)
Q Consensus 487 ~ 487 (499)
+
T Consensus 468 l 468 (537)
T 3fp2_A 468 L 468 (537)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.75 E-value=2.2e-16 Score=150.56 Aligned_cols=266 Identities=9% Similarity=-0.028 Sum_probs=217.0
Q ss_pred CHHHHHHHHHHHHhCCChHHHHHHHHHhhcCCCCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHH
Q 036198 176 EINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAAD 255 (499)
Q Consensus 176 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~~~~~la~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~ 255 (499)
+...+..+...+.+.|++++|.+.|+++... .+.+..+|..+..++.+.|++++|++
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~-----------------------~p~~~~~~~~lg~~~~~~g~~~~A~~ 120 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQ-----------------------DPGDAEAWQFLGITQAENENEQAAIV 120 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHH-----------------------CTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHh-----------------------CcCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 4556889999999999999999999988652 12367889999999999999999999
Q ss_pred HHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcC-----------HHhHHHHHHHHHhcCCHH
Q 036198 256 LFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPD-----------VSTYKEVLEGMCLAGKVE 324 (499)
Q Consensus 256 ~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~-----------~~~~~~ll~~~~~~g~~~ 324 (499)
.|+++.+.. +.+..++..+...|...|++++|...|+++.+.. |+ ...+..+...+...|+++
T Consensus 121 ~~~~al~~~----p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 194 (365)
T 4eqf_A 121 ALQRCLELQ----PNNLKALMALAVSYTNTSHQQDACEALKNWIKQN--PKYKYLVKNKKGSPGLTRRMSKSPVDSSVLE 194 (365)
T ss_dssp HHHHHHHHC----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--HHHHCC-------------------CCHHHH
T ss_pred HHHHHHhcC----CCCHHHHHHHHHHHHccccHHHHHHHHHHHHHhC--ccchHHHhhhccchHHHHHHHHHHhhhhhHH
Confidence 999999875 4568899999999999999999999999998763 32 223334578899999999
Q ss_pred HHHHHHHHHHhCCCC-CCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcChhhHHHHHHHHHhcCCchHHHHHHHHH
Q 036198 325 EAYKFLEEMGNKGYP-PDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEM 403 (499)
Q Consensus 325 ~a~~~~~~m~~~~~~-p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m 403 (499)
+|.+.++++.+.... ++..++..+...+...|++++|...|+++.+.. +.+..+|..+..+|...|++++|...|++.
T Consensus 195 ~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 273 (365)
T 4eqf_A 195 GVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRA 273 (365)
T ss_dssp HHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 999999999886432 157899999999999999999999999998864 246789999999999999999999999999
Q ss_pred hHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCC-----------CCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 036198 404 DKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLK-----------LPYRKFDSYLMQLSVIGDLGAIHKLSDH 472 (499)
Q Consensus 404 ~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~-----------p~~~~~~~ll~~~~~~g~~~~a~~~~~~ 472 (499)
.+.. +.+..++..+..+|...|++++|...++++.+.... .+...|..+..++...|+.+.+.++.++
T Consensus 274 l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 274 LEIQ-PGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHC-TTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HhcC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 8752 235788999999999999999999999998864311 1367899999999999999988776654
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.74 E-value=3.4e-16 Score=146.43 Aligned_cols=272 Identities=12% Similarity=-0.023 Sum_probs=223.7
Q ss_pred CHHHHHHHHHHHHhCCChHHHHHHHHHhhcCCCCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHH
Q 036198 176 EINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAAD 255 (499)
Q Consensus 176 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~~~~~la~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~ 255 (499)
+...+..+...+...|++++|..+|+++.+. .+.+...+..+..++...|++++|.+
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-----------------------~~~~~~~~~~l~~~~~~~~~~~~A~~ 76 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQA-----------------------APEREEAWRSLGLTQAENEKDGLAII 76 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHH-----------------------CTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHh-----------------------CCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 3456778888999999999999999987642 12367788899999999999999999
Q ss_pred HHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHhHHHH--------------HH-HHHhc
Q 036198 256 LFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEV--------------LE-GMCLA 320 (499)
Q Consensus 256 ~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l--------------l~-~~~~~ 320 (499)
.|+++.+.. +.+..++..+...+...|++++|...++++.+.. +.+...+..+ .. .+...
T Consensus 77 ~~~~a~~~~----~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (327)
T 3cv0_A 77 ALNHARMLD----PKDIAVHAALAVSHTNEHNANAALASLRAWLLSQ-PQYEQLGSVNLQADVDIDDLNVQSEDFFFAAP 151 (327)
T ss_dssp HHHHHHHHC----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-TTTTTC--------------------CCTTSH
T ss_pred HHHHHHhcC----cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHhHHHHHHHHHHHHHHhHHHHHc
Confidence 999999875 4578899999999999999999999999999763 2233333333 22 37788
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcChhhHHHHHHHHHhcCCchHHHHHH
Q 036198 321 GKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETW 400 (499)
Q Consensus 321 g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~ 400 (499)
|++++|.+.++++.+.... +...+..+...+...|++++|...++++.+.. +.+..++..+...+...|++++|.+.+
T Consensus 152 ~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~ 229 (327)
T 3cv0_A 152 NEYRECRTLLHAALEMNPN-DAQLHASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAY 229 (327)
T ss_dssp HHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 9999999999999876433 67889999999999999999999999998764 245778999999999999999999999
Q ss_pred HHHhHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCC-----------CHHHHHHHHHHHHhcCCHHHHHHH
Q 036198 401 HEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKL-----------PYRKFDSYLMQLSVIGDLGAIHKL 469 (499)
Q Consensus 401 ~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p-----------~~~~~~~ll~~~~~~g~~~~a~~~ 469 (499)
+++.+.. +.+..++..+...|...|++++|...++++.+..... +...+..+..++.+.|+.++|.++
T Consensus 230 ~~a~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 308 (327)
T 3cv0_A 230 NRALDIN-PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELT 308 (327)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHcC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHH
Confidence 9987753 3367889999999999999999999999998764321 477889999999999999999999
Q ss_pred HHHHHhhcC
Q 036198 470 SDHMRKFYN 478 (499)
Q Consensus 470 ~~~m~~~~~ 478 (499)
+++..+.++
T Consensus 309 ~~~~l~~~~ 317 (327)
T 3cv0_A 309 YAQNVEPFA 317 (327)
T ss_dssp TTCCSHHHH
T ss_pred HHHHHHhcc
Confidence 886655433
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.74 E-value=4.8e-16 Score=148.16 Aligned_cols=271 Identities=10% Similarity=-0.035 Sum_probs=215.4
Q ss_pred CHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhCCCh
Q 036198 114 EPLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLMILKQYTEKIKVKTQPEINALNLLLDALCKCGLV 193 (499)
Q Consensus 114 ~~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 193 (499)
+...|..+...+. +.|++++|..+|+++.... +.+..+|..+...+.+.|++
T Consensus 64 ~~~~~~~~~~~~~----~~g~~~~A~~~~~~al~~~------------------------p~~~~~~~~lg~~~~~~g~~ 115 (365)
T 4eqf_A 64 DWPGAFEEGLKRL----KEGDLPVTILFMEAAILQD------------------------PGDAEAWQFLGITQAENENE 115 (365)
T ss_dssp TCTTHHHHHHHHH----HHTCHHHHHHHHHHHHHHC------------------------TTCHHHHHHHHHHHHHTTCH
T ss_pred chhHHHHHHHHHH----HCCCHHHHHHHHHHHHHhC------------------------cCCHHHHHHHHHHHHHCCCH
Confidence 4566888888888 9999999999999998876 34678999999999999999
Q ss_pred HHHHHHHHHhhcCCCCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCC----
Q 036198 194 DYAETICKRVKNKVKPNANTYNILGMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISS---- 269 (499)
Q Consensus 194 ~~A~~~~~~m~~~~~p~~~~~~~la~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~---- 269 (499)
++|.+.|++..+. .+.+..++..+..+|...|++++|++.|+++.+.......
T Consensus 116 ~~A~~~~~~al~~-----------------------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 172 (365)
T 4eqf_A 116 QAAIVALQRCLEL-----------------------QPNNLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKN 172 (365)
T ss_dssp HHHHHHHHHHHHH-----------------------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC---
T ss_pred HHHHHHHHHHHhc-----------------------CCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHhCccchHHHhh
Confidence 9999999987651 1235788999999999999999999999999886411000
Q ss_pred --CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-cCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHH
Q 036198 270 --PTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCL-PDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYN 346 (499)
Q Consensus 270 --p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~-~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~ 346 (499)
.....+..+...+...|++++|...|+++.+.... .+..++..+...|...|++++|.+.+++..+... .+..+|.
T Consensus 173 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~ 251 (365)
T 4eqf_A 173 KKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRP-EDYSLWN 251 (365)
T ss_dssp ----------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHH
T ss_pred hccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHH
Confidence 01223345578889999999999999999987421 1688999999999999999999999999887643 3688999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCCcChhhHHHHHHHHHhcCCchHHHHHHHHHhHCCC---C--------CCHHHH
Q 036198 347 CFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGC---A--------QDVDTY 415 (499)
Q Consensus 347 ~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~---~--------p~~~~~ 415 (499)
.+..+|.+.|++++|...|+++.+.. +.+..++..+..+|...|++++|...|++..+... . .+...|
T Consensus 252 ~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~ 330 (365)
T 4eqf_A 252 RLGATLANGDRSEEAVEAYTRALEIQ-PGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIW 330 (365)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHH
Confidence 99999999999999999999998864 23478899999999999999999999999876310 1 135788
Q ss_pred HHHHHHHHhCCCHHHHHHHHHH
Q 036198 416 CVMIDGLFDCSKVEEACFLLEE 437 (499)
Q Consensus 416 ~~li~~~~~~g~~~~a~~~~~~ 437 (499)
..+..++...|+.+.+..+.++
T Consensus 331 ~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 331 AALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHHHcCcHHHHHHHHHh
Confidence 9999999999999988877654
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.73 E-value=3e-15 Score=142.60 Aligned_cols=267 Identities=10% Similarity=-0.065 Sum_probs=210.6
Q ss_pred HHhCCChHHHHH-HHHHhhcCCCCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCC
Q 036198 187 LCKCGLVDYAET-ICKRVKNKVKPNANTYNILGMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGS 265 (499)
Q Consensus 187 ~~~~g~~~~A~~-~~~~m~~~~~p~~~~~~~la~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~ 265 (499)
+...|++++|.+ .|++..... |+ ....+...+..+...+.+.|++++|...|+++.+..
T Consensus 35 ~~~~~~~~~a~~~~~~~a~~~~-~~------------------~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~- 94 (368)
T 1fch_A 35 HPWLSDYDDLTSATYDKGYQFE-EE------------------NPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD- 94 (368)
T ss_dssp -----------CHHHHCCCCCC-SS------------------CTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-
T ss_pred hHHHHHHHHHHhhhhhHHHhcC-CC------------------CcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-
Confidence 334578888888 777654321 11 111245667889999999999999999999999875
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhH
Q 036198 266 TISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTY 345 (499)
Q Consensus 266 ~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~ 345 (499)
+.+..++..+...+...|++++|...|+++.+.. +.+..++..+...+...|++++|.+.++.+.+.... +...+
T Consensus 95 ---p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~ 169 (368)
T 1fch_A 95 ---PKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPA-YAHLV 169 (368)
T ss_dssp ---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTT-TGGGC
T ss_pred ---CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-cHHHH
Confidence 4578899999999999999999999999999875 457888999999999999999999999999887533 22222
Q ss_pred HH---------------HHHHHHHcCCHHHHHHHHHHHHHCCCC-cChhhHHHHHHHHHhcCCchHHHHHHHHHhHCCCC
Q 036198 346 NC---------------FLKVLCDNKNGDEALRLYGRMIEVGCW-PSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCA 409 (499)
Q Consensus 346 ~~---------------li~~~~~~g~~~~a~~~~~~m~~~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~ 409 (499)
.. .+..+...|++++|...++++.+.... ++..++..+...|...|++++|...++++.+.. +
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~ 248 (368)
T 1fch_A 170 TPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-P 248 (368)
T ss_dssp C---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-T
T ss_pred HHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-c
Confidence 21 234444899999999999999886422 147889999999999999999999999988752 3
Q ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcChh
Q 036198 410 QDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHMRKFYNPV 480 (499)
Q Consensus 410 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~ 480 (499)
.+..++..+...+...|++++|...++++.+.. +.+...+..+..+|.+.|++++|.+.++++.+..+..
T Consensus 249 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~ 318 (368)
T 1fch_A 249 NDYLLWNKLGATLANGNQSEEAVAAYRRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKS 318 (368)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 367889999999999999999999999998875 3468899999999999999999999999999876654
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.72 E-value=8e-15 Score=134.63 Aligned_cols=258 Identities=11% Similarity=0.066 Sum_probs=209.7
Q ss_pred HHHHHhCCChHHHHHHHHHhhcCCCCChhhHHHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHhcCCHhHHHHHHHHHH
Q 036198 184 LDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQTLEEMIQMGHAPDN--FTYNTAIDTFCKARMVTEAADLFEFMR 261 (499)
Q Consensus 184 i~~~~~~g~~~~A~~~~~~m~~~~~p~~~~~~~la~~~~~~m~~~g~~p~~--~~~~~li~~~~~~g~~~~a~~~~~~m~ 261 (499)
++-....|++..|+..++.... ..|+. .....+.++|...|+++.|+..++.
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~~------------------------~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~-- 59 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVKP------------------------SSPERDVERDVFLYRAYLAQRKYGVVLDEIKP-- 59 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCC------------------------CSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT--
T ss_pred HHHHHHHHHHHHHHHHHHhccc------------------------CCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc--
Confidence 3445668999999998877644 22332 3556678999999999999987654
Q ss_pred HcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc-CHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 036198 262 TKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLP-DVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPP 340 (499)
Q Consensus 262 ~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p 340 (499)
. .+|+..++..+...+...++.++|.+.++++...+..| +...+..+...+...|++++|.+.++. +.
T Consensus 60 -~----~~~~~~a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~ 128 (291)
T 3mkr_A 60 -S----SAPELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GD 128 (291)
T ss_dssp -T----SCHHHHHHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CC
T ss_pred -c----CChhHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CC
Confidence 1 36788899999999999999999999999999876545 455666677899999999999999987 45
Q ss_pred CHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcChhhH---HHHHHHHHhcCCchHHHHHHHHHhHCCCCCCHHHHHH
Q 036198 341 DIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTY---NMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCV 417 (499)
Q Consensus 341 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~---~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ 417 (499)
+...+..+...+.+.|++++|.+.++++.+.. |+.... ..++..+...|++++|..+|+++.+. .+.+...++.
T Consensus 129 ~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~-~p~~~~~~~~ 205 (291)
T 3mkr_A 129 SLECMAMTVQILLKLDRLDLARKELKKMQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK-CSPTLLLLNG 205 (291)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH-SCCCHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh-CCCcHHHHHH
Confidence 78899999999999999999999999999864 554321 22334444568999999999999886 4568889999
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH-HHHHHHHHHhhcChhHH
Q 036198 418 MIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGA-IHKLSDHMRKFYNPVIA 482 (499)
Q Consensus 418 li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~-a~~~~~~m~~~~~~~~~ 482 (499)
+..++.+.|++++|...+++..+... -+..++..++..+...|+.++ +.++++++.+..|..+.
T Consensus 206 la~~~~~~g~~~eA~~~l~~al~~~p-~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~ 270 (291)
T 3mkr_A 206 QAACHMAQGRWEAAEGVLQEALDKDS-GHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPF 270 (291)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCChH
Confidence 99999999999999999999998763 378899999999999999875 67899999988776543
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.71 E-value=2.2e-15 Score=140.89 Aligned_cols=267 Identities=10% Similarity=-0.045 Sum_probs=218.4
Q ss_pred CHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhCCCh
Q 036198 114 EPLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLMILKQYTEKIKVKTQPEINALNLLLDALCKCGLV 193 (499)
Q Consensus 114 ~~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 193 (499)
+...+..+...+. ..|++++|..+|+++.+.. +.+..++..+...+...|++
T Consensus 20 ~~~~~~~~a~~~~----~~~~~~~A~~~~~~~~~~~------------------------~~~~~~~~~l~~~~~~~~~~ 71 (327)
T 3cv0_A 20 YHENPMEEGLSML----KLANLAEAALAFEAVCQAA------------------------PEREEAWRSLGLTQAENEKD 71 (327)
T ss_dssp GSSCHHHHHHHHH----HTTCHHHHHHHHHHHHHHC------------------------TTCHHHHHHHHHHHHHTTCH
T ss_pred hhHHHHHHHHHHH----HhccHHHHHHHHHHHHHhC------------------------CCCHHHHHHHHHHHHHcCCH
Confidence 3455667777788 8999999999999998865 24677899999999999999
Q ss_pred HHHHHHHHHhhcCCCCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCCCCHH
Q 036198 194 DYAETICKRVKNKVKPNANTYNILGMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAK 273 (499)
Q Consensus 194 ~~A~~~~~~m~~~~~p~~~~~~~la~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~p~~~ 273 (499)
++|.+.|+++.+. .+.+..++..+...+...|++++|.+.++++.+... .+..
T Consensus 72 ~~A~~~~~~a~~~-----------------------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~----~~~~ 124 (327)
T 3cv0_A 72 GLAIIALNHARML-----------------------DPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQP----QYEQ 124 (327)
T ss_dssp HHHHHHHHHHHHH-----------------------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTST----TTTT
T ss_pred HHHHHHHHHHHhc-----------------------CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC----ccHH
Confidence 9999999987652 123677889999999999999999999999998752 2222
Q ss_pred HHHHH--------------HH-HHHHcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 036198 274 TYAIM--------------IV-ALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGY 338 (499)
Q Consensus 274 ~~~~l--------------l~-~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~ 338 (499)
.+..+ .. .+...|++++|...++++.+.. +.+...+..+...+...|++++|.+.++.+.+...
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~ 203 (327)
T 3cv0_A 125 LGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRP 203 (327)
T ss_dssp C--------------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC
Confidence 33332 22 3677889999999999999874 44788899999999999999999999999887643
Q ss_pred CCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcChhhHHHHHHHHHhcCCchHHHHHHHHHhHCCCCC--------
Q 036198 339 PPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQ-------- 410 (499)
Q Consensus 339 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p-------- 410 (499)
.+..++..+...+...|++++|...++++.+.. +.+..++..+..+|...|++++|.+.+++..+.....
T Consensus 204 -~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 281 (327)
T 3cv0_A 204 -DDAQLWNKLGATLANGNRPQEALDAYNRALDIN-PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEAS 281 (327)
T ss_dssp -TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----C
T ss_pred -CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccch
Confidence 367889999999999999999999999998754 2457789999999999999999999999987652221
Q ss_pred ---CHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 036198 411 ---DVDTYCVMIDGLFDCSKVEEACFLLEEV 438 (499)
Q Consensus 411 ---~~~~~~~li~~~~~~g~~~~a~~~~~~m 438 (499)
+...|..+..++...|+.++|..++++.
T Consensus 282 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 312 (327)
T 3cv0_A 282 REATRSMWDFFRMLLNVMNRPDLVELTYAQN 312 (327)
T ss_dssp CTHHHHHHHHHHHHHHHTTCHHHHHHHTTCC
T ss_pred hhcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 4678889999999999999999988654
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.69 E-value=3.7e-12 Score=126.31 Aligned_cols=326 Identities=12% Similarity=0.046 Sum_probs=239.9
Q ss_pred CChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhcchhh----hhhHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHHh
Q 036198 93 FEEKIAFRFFMWAGHQDNYAHEPLAYNLMIDILSSTKYK----AKQFRLVCSMLDYMKRNNKVFVPVDVLLMILKQYTEK 168 (499)
Q Consensus 93 ~~~~~a~~~f~~~~~~~~~~~~~~~~~~li~~~~~~~~~----~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~l~~~~~~ 168 (499)
.+.+.|+..|+..... + +...+..+-..+. . .+++++|...|++..+.+
T Consensus 57 ~~~~~A~~~~~~a~~~-~---~~~a~~~Lg~~y~----~g~g~~~~~~~A~~~~~~a~~~~------------------- 109 (490)
T 2xm6_A 57 KDLTQAMDWFRRAAEQ-G---YTPAEYVLGLRYM----NGEGVPQDYAQAVIWYKKAALKG------------------- 109 (490)
T ss_dssp CCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHH----HTSSSCCCHHHHHHHHHHHHHTT-------------------
T ss_pred cCHHHHHHHHHHHHHC-C---CHHHHHHHHHHHH----cCCCCCCCHHHHHHHHHHHHHCC-------------------
Confidence 3445566666655433 2 4555666666665 4 566777777776665544
Q ss_pred hhcCCCCCHHHHHHHHHHHHh----CCChHHHHHHHHHhhcCCCCChhhHHHH----------------HHHHHHHHHHc
Q 036198 169 IKVKTQPEINALNLLLDALCK----CGLVDYAETICKRVKNKVKPNANTYNIL----------------GMQTLEEMIQM 228 (499)
Q Consensus 169 ~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~p~~~~~~~l----------------a~~~~~~m~~~ 228 (499)
+...+..|...|.. .+++++|.+.|++..+.- +...+..+ |.+.|+...+.
T Consensus 110 -------~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~--~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~ 180 (490)
T 2xm6_A 110 -------LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG--RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQ 180 (490)
T ss_dssp -------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred -------CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC
Confidence 33344445555544 455555555555544321 22222222 44445555554
Q ss_pred CCCCCHHHHHHHHHHHHh----cCCHhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHH
Q 036198 229 GHAPDNFTYNTAIDTFCK----ARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQ----NDRMEECFSLLGHMIN 300 (499)
Q Consensus 229 g~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~m~~ 300 (499)
| +...+..+...|.. .++.++|.++|++..+.+ +..++..+...|.. .+++++|..+|++..+
T Consensus 181 ~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~------~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~ 251 (490)
T 2xm6_A 181 G---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG------DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAE 251 (490)
T ss_dssp T---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHT
T ss_pred C---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH
Confidence 3 67788888888887 899999999999998876 56778888888886 7899999999999887
Q ss_pred cCCCcCHHhHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHc-----CCHHHHHHHHHHHHHC
Q 036198 301 SGCLPDVSTYKEVLEGMCL----AGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDN-----KNGDEALRLYGRMIEV 371 (499)
Q Consensus 301 ~~~~~~~~~~~~ll~~~~~----~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~-----g~~~~a~~~~~~m~~~ 371 (499)
.| +...+..+...|.. .++.++|.+.|+...+.| +...+..+...|... +++++|...|++..+.
T Consensus 252 ~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~ 325 (490)
T 2xm6_A 252 QG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQ 325 (490)
T ss_dssp TT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHT
T ss_pred CC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhc
Confidence 65 45566677777777 899999999999988775 556777788888877 8999999999999887
Q ss_pred CCCcChhhHHHHHHHHHhcC---CchHHHHHHHHHhHCCCCCCHHHHHHHHHHHHh----CCCHHHHHHHHHHHHHCCCC
Q 036198 372 GCWPSVQTYNMLISMYFELG---EPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFD----CSKVEEACFLLEEVVNKGLK 444 (499)
Q Consensus 372 ~~~~~~~~~~~li~~~~~~~---~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~~~ 444 (499)
| +...+..+...|...| +.++|.+.|++..+.| +...+..+-..|.. .+++++|..++++..+.|
T Consensus 326 ~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~-- 397 (490)
T 2xm6_A 326 G---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG-- 397 (490)
T ss_dssp T---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--
T ss_pred C---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC--
Confidence 5 4466777777777766 7889999999998864 67788888888888 899999999999999876
Q ss_pred CCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhhcC
Q 036198 445 LPYRKFDSYLMQLSV----IGDLGAIHKLSDHMRKFYN 478 (499)
Q Consensus 445 p~~~~~~~ll~~~~~----~g~~~~a~~~~~~m~~~~~ 478 (499)
+...+..+...|.. .++.++|.+.+++..+..+
T Consensus 398 -~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~ 434 (490)
T 2xm6_A 398 -LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDM 434 (490)
T ss_dssp -CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHC
T ss_pred -CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCC
Confidence 57788888888888 8999999999999998873
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.67 E-value=9.4e-14 Score=127.47 Aligned_cols=248 Identities=10% Similarity=0.059 Sum_probs=199.9
Q ss_pred hhhhHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHHhhhcCCCCC--HHHHHHHHHHHHhCCChHHHHHHHHHhhcCCC
Q 036198 131 KAKQFRLVCSMLDYMKRNNKVFVPVDVLLMILKQYTEKIKVKTQPE--INALNLLLDALCKCGLVDYAETICKRVKNKVK 208 (499)
Q Consensus 131 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 208 (499)
..|++..|+..++...... |+ ......+.++|...|+++.|...++..
T Consensus 11 ~~g~y~~ai~~~~~~~~~~-------------------------p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~----- 60 (291)
T 3mkr_A 11 YIGSYQQCINEAQRVKPSS-------------------------PERDVERDVFLYRAYLAQRKYGVVLDEIKPS----- 60 (291)
T ss_dssp HTTCHHHHHHHHHHSCCCS-------------------------HHHHHHHHHHHHHHHHHTTCHHHHHHHSCTT-----
T ss_pred HHHHHHHHHHHHHhcccCC-------------------------chhhHHHHHHHHHHHHHCCCHHHHHHHhccc-----
Confidence 6799999999887754432 33 235566788999999999998755331
Q ss_pred CChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCCC-CHHHHHHHHHHHHHcCC
Q 036198 209 PNANTYNILGMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSP-TAKTYAIMIVALVQNDR 287 (499)
Q Consensus 209 p~~~~~~~la~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~p-~~~~~~~ll~~~~~~~~ 287 (499)
-+|+..++..+...+...|+.++|++.++++...+ ..| +...+..+...+...|+
T Consensus 61 ---------------------~~~~~~a~~~la~~~~~~~~~~~A~~~l~~ll~~~---~~P~~~~~~~~la~~~~~~g~ 116 (291)
T 3mkr_A 61 ---------------------SAPELQAVRMFAEYLASHSRRDAIVAELDREMSRS---VDVTNTTFLLMAASIYFYDQN 116 (291)
T ss_dssp ---------------------SCHHHHHHHHHHHHHHCSTTHHHHHHHHHHHHHSC---CCCSCHHHHHHHHHHHHHTTC
T ss_pred ---------------------CChhHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcc---cCCCCHHHHHHHHHHHHHCCC
Confidence 24577788899999999999999999999998875 234 56677777889999999
Q ss_pred HHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhH---HHHHHHHHHcCCHHHHHHH
Q 036198 288 MEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTY---NCFLKVLCDNKNGDEALRL 364 (499)
Q Consensus 288 ~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~---~~li~~~~~~g~~~~a~~~ 364 (499)
+++|++.+++ +.+...+..+...+.+.|++++|.+.++.+.+.. |+.... ...+..+...|++++|..+
T Consensus 117 ~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~ 188 (291)
T 3mkr_A 117 PDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKKMQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYI 188 (291)
T ss_dssp HHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHH
T ss_pred HHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHH
Confidence 9999999987 4678899999999999999999999999998874 443211 1233444456899999999
Q ss_pred HHHHHHCCCCcChhhHHHHHHHHHhcCCchHHHHHHHHHhHCCCCCCHHHHHHHHHHHHhCCCHHH-HHHHHHHHHHCC
Q 036198 365 YGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEE-ACFLLEEVVNKG 442 (499)
Q Consensus 365 ~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~-a~~~~~~m~~~~ 442 (499)
|+++.+.. +.+...++.+..++.+.|++++|...+++..+.. +-+..++..++..+...|+.++ +.++++++.+..
T Consensus 189 ~~~~l~~~-p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~-p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~ 265 (291)
T 3mkr_A 189 FQEMADKC-SPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD-SGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAH 265 (291)
T ss_dssp HHHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC
T ss_pred HHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC
Confidence 99999863 4678899999999999999999999999988763 3377789999999999999876 678999998775
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.67 E-value=1.5e-15 Score=142.99 Aligned_cols=289 Identities=10% Similarity=0.034 Sum_probs=126.4
Q ss_pred HHHHHHHccCCChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHHHcCCCcccHHHHHHHH
Q 036198 83 SVVGVLQRFQFEEKIAFRFFMWAGHQDNYAHEPLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLMIL 162 (499)
Q Consensus 83 ~~~~~l~~~~~~~~~a~~~f~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~l 162 (499)
.+..+|..++. -+.|.++++.+ +++.+|..+..++. +.|++++|.+.|.+.
T Consensus 8 a~~~ll~~~~~-ld~A~~fae~~-------~~~~vWs~La~A~l----~~g~~~eAIdsfika----------------- 58 (449)
T 1b89_A 8 AVQVLIEHIGN-LDRAYEFAERC-------NEPAVWSQLAKAQL----QKGMVKEAIDSYIKA----------------- 58 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHccC-HHHHHHHHHhC-------CChHHHHHHHHHHH----HcCCHHHHHHHHHcC-----------------
Confidence 34444444332 34577888765 24468999999999 999999999998542
Q ss_pred HHHHHhhhcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHhhcCCCCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 036198 163 KQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQTLEEMIQMGHAPDNFTYNTAID 242 (499)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~~~~~la~~~~~~m~~~g~~p~~~~~~~li~ 242 (499)
+|...|..+++.+...|++++|...++...+. .+++.+.+.++.
T Consensus 59 ------------~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~------------------------~~~~~i~~~Li~ 102 (449)
T 1b89_A 59 ------------DDPSSYMEVVQAANTSGNWEELVKYLQMARKK------------------------ARESYVETELIF 102 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ------------CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh------------------------CccchhHHHHHH
Confidence 46668999999999999999999976655431 245677888999
Q ss_pred HHHhcCCHhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCC
Q 036198 243 TFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGK 322 (499)
Q Consensus 243 ~~~~~g~~~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~ 322 (499)
+|.+.|+++++.++++ .|+..+|+.+...|...|.+++|...|..+ ..|..+..++.+.|+
T Consensus 103 ~Y~Klg~l~e~e~f~~----------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n~~~LA~~L~~Lg~ 163 (449)
T 1b89_A 103 ALAKTNRLAELEEFIN----------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGE 163 (449)
T ss_dssp ------CHHHHTTTTT----------CC----------------CTTTHHHHHHHT---------TCHHHHHHHHHTTTC
T ss_pred HHHHhCCHHHHHHHHc----------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------hhHHHHHHHHHHhcc
Confidence 9999999999888873 366779999999999999999999999876 478889999999999
Q ss_pred HHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcChhhHHHHHHHHHhcCCchHHHHHHHH
Q 036198 323 VEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHE 402 (499)
Q Consensus 323 ~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 402 (499)
+++|.+.+.++ .++.+|..++.+|...|+++.|......+ ...+.-...++..|.+.|.+++|..+++.
T Consensus 164 yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L-----~~~ad~l~~lv~~Yek~G~~eEai~lLe~ 232 (449)
T 1b89_A 164 YQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHI-----VVHADELEELINYYQDRGYFEELITMLEA 232 (449)
T ss_dssp HHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTT-----TTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHH-----HhCHhhHHHHHHHHHHCCCHHHHHHHHHH
Confidence 99999999988 27889999999999999999995554432 22333355688889999999999999998
Q ss_pred HhHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH-CCCCC------CHHHHHHHHHHHHhcCCHHHHHH
Q 036198 403 MDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVN-KGLKL------PYRKFDSYLMQLSVIGDLGAIHK 468 (499)
Q Consensus 403 m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-~~~~p------~~~~~~~ll~~~~~~g~~~~a~~ 468 (499)
..... +-....|+.+--+|++- ++++.++.++...+ -+++| +...|..+.-.|...|+++.|..
T Consensus 233 aL~le-~ah~~~ftel~il~~ky-~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~ 303 (449)
T 1b89_A 233 ALGLE-RAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 303 (449)
T ss_dssp HTTST-TCCHHHHHHHHHHHHTT-CHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHH
T ss_pred HhCCc-HHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHH
Confidence 87654 45677788887777764 23433333332221 12222 34567777788888888887766
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.65 E-value=2.1e-12 Score=129.42 Aligned_cols=430 Identities=13% Similarity=0.086 Sum_probs=280.4
Q ss_pred Ccc-hhhHHHHHHHhccCccchhhccCCccccccccccCCCcchHHHHHHHHHhccCCCchHHHHHhhC----CCCCCHH
Q 036198 8 SPT-EAQYAVLVRVIRTKSLQSYIGKVPSLVCKVFDESSDSVSDVAKLYEAIIDNSNAYDNMEKALDSL----GVPLTTD 82 (499)
Q Consensus 8 ~p~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~al~~~----~~~~~~~ 82 (499)
.|+ ...|..+++....+++..+ +..++......|.+...|...+..+.+.++.++|...+ ...++.+
T Consensus 9 ~P~~~~~w~~l~~~~~~~~~~~a--------~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p~~~ 80 (530)
T 2ooe_A 9 NPYDLDAWSILIREAQNQPIDKA--------RKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVLHID 80 (530)
T ss_dssp CTTCHHHHHHHHHHHHSSCHHHH--------HHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCCCHH
T ss_pred CCCCHHHHHHHHHHHHhCCHHHH--------HHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChH
Confidence 353 5567777764443443333 34555555566777788888888888888888886644 3334666
Q ss_pred HHHHHHH----ccCCC---hHHHHHHHHHhhcCCCCCC-CHHHHHHHHHHHhcch-----hhhhhHHHHHHHHHHHHHcC
Q 036198 83 SVVGVLQ----RFQFE---EKIAFRFFMWAGHQDNYAH-EPLAYNLMIDILSSTK-----YKAKQFRLVCSMLDYMKRNN 149 (499)
Q Consensus 83 ~~~~~l~----~~~~~---~~~a~~~f~~~~~~~~~~~-~~~~~~~li~~~~~~~-----~~~~~~~~a~~~~~~m~~~~ 149 (499)
++...+. ..+.. .+.+..+|+......|..| +...|...+....+.. ...|+++.|..+|++.....
T Consensus 81 lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P 160 (530)
T 2ooe_A 81 LWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNP 160 (530)
T ss_dssp HHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhch
Confidence 5544432 12211 2234557777655445443 5678888877665100 02789999999999988731
Q ss_pred CCcccH-HHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHhhcCCCCChhhHHHHHHHHHHHHHHc
Q 036198 150 KVFVPV-DVLLMILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQTLEEMIQM 228 (499)
Q Consensus 150 ~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~~~~~la~~~~~~m~~~ 228 (499)
.... ..+.. ...+.+.. +..+...++. .+.++++.|..++..+.. +....+.
T Consensus 161 --~~~~~~~~~~-~~~~e~~~------~~~~~~~~l~--~~~~~~~~A~~~~~~~~~----------------~~~~l~~ 213 (530)
T 2ooe_A 161 --MINIEQLWRD-YNKYEEGI------NIHLAKKMIE--DRSRDYMNARRVAKEYET----------------VMKGLDR 213 (530)
T ss_dssp --CTTHHHHHHH-HHHHHHHH------CHHHHHHHHH--TTHHHHHHHHHHHHHHHH----------------HHHHCCS
T ss_pred --hhhHHHHHHH-HHHHHHhh------chhHHHHHHH--HhhHHHHHHHHHHHHHHH----------------HHHHhcc
Confidence 1111 11111 11111110 1111122221 134567777777766321 0000011
Q ss_pred ---CCCCC--------HHHHHHHHHHHHhc----CCH----hHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHH-----
Q 036198 229 ---GHAPD--------NFTYNTAIDTFCKA----RMV----TEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQ----- 284 (499)
Q Consensus 229 ---g~~p~--------~~~~~~li~~~~~~----g~~----~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~----- 284 (499)
.++|+ ...|...+...... ++. ++|..+|++..... +-+...|......+.+
T Consensus 214 ~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~----p~~~~~w~~~~~~~~~~~~~~ 289 (530)
T 2ooe_A 214 NAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL----GHHPDIWYEAAQYLEQSSKLL 289 (530)
T ss_dssp SSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHHH
T ss_pred ccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhC----CCCHHHHHHHHHHHHHhchhh
Confidence 01222 23444444333221 232 47788999988864 4578889888888876
Q ss_pred --cCCHH-------HHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--HhhHHHHHHHHH
Q 036198 285 --NDRME-------ECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPD--IVTYNCFLKVLC 353 (499)
Q Consensus 285 --~~~~~-------~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~--~~~~~~li~~~~ 353 (499)
.|+++ +|..+|++..+.-.+.+...+..+...+.+.|++++|.++|+...+. .|+ ...|...+..+.
T Consensus 290 ~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~ 367 (530)
T 2ooe_A 290 AEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFAR 367 (530)
T ss_dssp HTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHH
T ss_pred hhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCc--cccCchHHHHHHHHHHH
Confidence 68876 89999999986323446888999999999999999999999999986 343 258888999999
Q ss_pred HcCCHHHHHHHHHHHHHCCCCcChhhHHHHHHH-HHhcCCchHHHHHHHHHhHCCCCCCHHHHHHHHHHHHhCCCHHHHH
Q 036198 354 DNKNGDEALRLYGRMIEVGCWPSVQTYNMLISM-YFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEAC 432 (499)
Q Consensus 354 ~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~-~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~ 432 (499)
+.|++++|.++|++..+... .+...|...... +...|+.++|..+|+...+.. +-+...|..++..+.+.|+.++|.
T Consensus 368 ~~~~~~~A~~~~~~Al~~~~-~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~-p~~~~~~~~~~~~~~~~g~~~~Ar 445 (530)
T 2ooe_A 368 RAEGIKSGRMIFKKAREDAR-TRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTR 445 (530)
T ss_dssp HHHHHHHHHHHHHHHHTCTT-CCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHTTTTCHHHHH
T ss_pred HhcCHHHHHHHHHHHHhccC-CchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhCCCHhhHH
Confidence 99999999999999987531 223333322222 336899999999999887752 236788999999999999999999
Q ss_pred HHHHHHHHCCC-CCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcChh
Q 036198 433 FLLEEVVNKGL-KLP--YRKFDSYLMQLSVIGDLGAIHKLSDHMRKFYNPV 480 (499)
Q Consensus 433 ~~~~~m~~~~~-~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~ 480 (499)
.+|++....+. .|+ ...|..++......|+.+.+..+.+++.+.++..
T Consensus 446 ~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~~p~~ 496 (530)
T 2ooe_A 446 VLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREE 496 (530)
T ss_dssp HHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCchh
Confidence 99999998753 222 4478888888888999999999999999988753
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.64 E-value=2.3e-11 Score=120.55 Aligned_cols=321 Identities=12% Similarity=0.010 Sum_probs=256.5
Q ss_pred CHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHh----
Q 036198 114 EPLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLMILKQYTEKIKVKTQPEINALNLLLDALCK---- 189 (499)
Q Consensus 114 ~~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~li~~~~~---- 189 (499)
++..+..+-..+..-....+++++|...|++..+.+ +...+..|...|..
T Consensus 38 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~--------------------------~~~a~~~Lg~~y~~g~g~ 91 (490)
T 2xm6_A 38 EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG--------------------------YTPAEYVLGLRYMNGEGV 91 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--------------------------CHHHHHHHHHHHHHTSSS
T ss_pred CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC--------------------------CHHHHHHHHHHHHcCCCC
Confidence 677777777777710001789999999999988765 55678888888888
Q ss_pred CCChHHHHHHHHHhhcCCCCChhhHHHH----------------HHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCC
Q 036198 190 CGLVDYAETICKRVKNKVKPNANTYNIL----------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCK----ARM 249 (499)
Q Consensus 190 ~g~~~~A~~~~~~m~~~~~p~~~~~~~l----------------a~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~ 249 (499)
.+++++|.+.|++..+.. +...+..+ |...|+...+.| +...+..+...|.. .++
T Consensus 92 ~~~~~~A~~~~~~a~~~~--~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d 166 (490)
T 2xm6_A 92 PQDYAQAVIWYKKAALKG--LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRD 166 (490)
T ss_dssp CCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCC
T ss_pred CCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCC
Confidence 899999999999986532 33343333 777787777765 56677788888877 789
Q ss_pred HhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHh----cC
Q 036198 250 VTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQ----NDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCL----AG 321 (499)
Q Consensus 250 ~~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~----~g 321 (499)
+++|.+.|++..+.+ +...+..+...|.. .++.++|...|++..+.| +...+..+...|.. .+
T Consensus 167 ~~~A~~~~~~a~~~~------~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~ 237 (490)
T 2xm6_A 167 YVMAREWYSKAAEQG------NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQ 237 (490)
T ss_dssp HHHHHHHHHHHHHTT------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCC
T ss_pred HHHHHHHHHHHHHCC------CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCC
Confidence 999999999998876 57788888888888 899999999999998875 56677777777876 78
Q ss_pred CHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCCcChhhHHHHHHHHHhc-----CC
Q 036198 322 KVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCD----NKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFEL-----GE 392 (499)
Q Consensus 322 ~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~-----~~ 392 (499)
++++|.+.|+...+.| +...+..+...|.. .+++++|...|++..+.| +...+..+...|... ++
T Consensus 238 ~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~ 311 (490)
T 2xm6_A 238 DYTQSRVLFSQSAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKN 311 (490)
T ss_dssp CHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCC
T ss_pred CHHHHHHHHHHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCC
Confidence 9999999999988875 45677777777877 899999999999998765 455777788888877 89
Q ss_pred chHHHHHHHHHhHCCCCCCHHHHHHHHHHHHhCC---CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHH
Q 036198 393 PDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCS---KVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSV----IGDLGA 465 (499)
Q Consensus 393 ~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g---~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~----~g~~~~ 465 (499)
.++|...+++..+.| +...+..+...|...| +.++|.+++++..+.| +...+..+...|.. .++.++
T Consensus 312 ~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~ 385 (490)
T 2xm6_A 312 REQAISWYTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQ 385 (490)
T ss_dssp HHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHH
T ss_pred HHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHH
Confidence 999999999998874 5567777777887766 7899999999999885 67788888888988 899999
Q ss_pred HHHHHHHHHhhcChhHHHHHH
Q 036198 466 IHKLSDHMRKFYNPVIARRLA 486 (499)
Q Consensus 466 a~~~~~~m~~~~~~~~~~~~~ 486 (499)
|.+.+++..+...+.....++
T Consensus 386 A~~~~~~A~~~~~~~a~~~Lg 406 (490)
T 2xm6_A 386 AAIWMRKAAEQGLSAAQVQLG 406 (490)
T ss_dssp HHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHH
Confidence 999999998876655444333
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.63 E-value=8.7e-12 Score=124.93 Aligned_cols=183 Identities=9% Similarity=0.013 Sum_probs=141.3
Q ss_pred HHHHHHHHHHHcCCCcCHHhHHHHHHHHHh-------cCCHH-------HHHHHHHHHHhCCCCCCHhhHHHHHHHHHHc
Q 036198 290 ECFSLLGHMINSGCLPDVSTYKEVLEGMCL-------AGKVE-------EAYKFLEEMGNKGYPPDIVTYNCFLKVLCDN 355 (499)
Q Consensus 290 ~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~-------~g~~~-------~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 355 (499)
++..+|++..... +.+...|......+.+ .|+++ +|.+++++..+.-.+-+...|..++..+.+.
T Consensus 256 ~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~ 334 (530)
T 2ooe_A 256 RVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESR 334 (530)
T ss_dssp HHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhc
Confidence 5666777776542 3456677777776665 68876 8999999988632233678899999999999
Q ss_pred CCHHHHHHHHHHHHHCCCCcC--hhhHHHHHHHHHhcCCchHHHHHHHHHhHCCCCCCHHHHHHHHHH-HHhCCCHHHHH
Q 036198 356 KNGDEALRLYGRMIEVGCWPS--VQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDG-LFDCSKVEEAC 432 (499)
Q Consensus 356 g~~~~a~~~~~~m~~~~~~~~--~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~-~~~~g~~~~a~ 432 (499)
|++++|..+|+++.+. .|+ ...|..++..+.+.|++++|.++|++..+.. +.+...|...... +...|+.++|.
T Consensus 335 g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~-~~~~~~~~~~a~~~~~~~~~~~~A~ 411 (530)
T 2ooe_A 335 MKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAF 411 (530)
T ss_dssp TCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCT-TCCTHHHHHHHHHHHHHTCCHHHHH
T ss_pred CCHHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhcc-CCchHHHHHHHHHHHHHcCChhHHH
Confidence 9999999999999985 354 2578888888899999999999999998752 1222333322222 33689999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhc
Q 036198 433 FLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHMRKFY 477 (499)
Q Consensus 433 ~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~ 477 (499)
.+|++..+.. +-+...|..++..+.+.|+.++|..+|++..+..
T Consensus 412 ~~~e~al~~~-p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~ 455 (530)
T 2ooe_A 412 KIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSG 455 (530)
T ss_dssp HHHHHHHHHH-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHC-CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhcc
Confidence 9999998765 2368899999999999999999999999998864
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.62 E-value=3.6e-12 Score=115.92 Aligned_cols=232 Identities=9% Similarity=-0.040 Sum_probs=204.7
Q ss_pred CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCcCHH
Q 036198 233 DNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQ----NDRMEECFSLLGHMINSGCLPDVS 308 (499)
Q Consensus 233 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~m~~~~~~~~~~ 308 (499)
+..++..+...+...|++++|++.|++..+.+ +..++..+...|.. .+++++|...|++..+.+ +..
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~------~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~ 75 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK------ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSN 75 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHH
Confidence 56778889999999999999999999999855 46788889999999 999999999999999886 778
Q ss_pred hHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCCcChhhH
Q 036198 309 TYKEVLEGMCL----AGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCD----NKNGDEALRLYGRMIEVGCWPSVQTY 380 (499)
Q Consensus 309 ~~~~ll~~~~~----~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~~~~~~~~~ 380 (499)
.+..+...|.. .+++++|.+.|++..+.+ +...+..+...|.. .+++++|...|++..+.+ +...+
T Consensus 76 a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~ 149 (273)
T 1ouv_A 76 GCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGC 149 (273)
T ss_dssp HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHH
T ss_pred HHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHH
Confidence 88889999999 999999999999998875 67888999999999 999999999999999876 56677
Q ss_pred HHHHHHHHh----cCCchHHHHHHHHHhHCCCCCCHHHHHHHHHHHHh----CCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 036198 381 NMLISMYFE----LGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFD----CSKVEEACFLLEEVVNKGLKLPYRKFDS 452 (499)
Q Consensus 381 ~~li~~~~~----~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~~~p~~~~~~~ 452 (499)
..+...|.. .+++++|.+.+++..+.+ +...+..+...|.. .+++++|...+++..+.+ +...+..
T Consensus 150 ~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~ 223 (273)
T 1ouv_A 150 TILGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFN 223 (273)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred HHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHHHHH
Confidence 888888888 899999999999998874 56778888889998 999999999999999886 3677888
Q ss_pred HHHHHHh----cCCHHHHHHHHHHHHhhcChhHHHHH
Q 036198 453 YLMQLSV----IGDLGAIHKLSDHMRKFYNPVIARRL 485 (499)
Q Consensus 453 ll~~~~~----~g~~~~a~~~~~~m~~~~~~~~~~~~ 485 (499)
+...|.. .|++++|.+.+++..+..++.....+
T Consensus 224 l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~l 260 (273)
T 1ouv_A 224 LGAMQYNGEGVTRNEKQAIENFKKGCKLGAKGACDIL 260 (273)
T ss_dssp HHHHHHTTSSSSCCSTTHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHcCCCcccCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 8899998 99999999999999998877554444
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.62 E-value=2.7e-15 Score=141.25 Aligned_cols=240 Identities=14% Similarity=0.097 Sum_probs=105.9
Q ss_pred hhhhHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHhhcCCCCC
Q 036198 131 KAKQFRLVCSMLDYMKRNNKVFVPVDVLLMILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPN 210 (499)
Q Consensus 131 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~ 210 (499)
+.|++++|.++++++. +..+|..++.++.+.|++++|++.|.+.
T Consensus 15 ~~~~ld~A~~fae~~~-----------------------------~~~vWs~La~A~l~~g~~~eAIdsfika------- 58 (449)
T 1b89_A 15 HIGNLDRAYEFAERCN-----------------------------EPAVWSQLAKAQLQKGMVKEAIDSYIKA------- 58 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCC-----------------------------ChHHHHHHHHHHHHcCCHHHHHHHHHcC-------
Confidence 6778999999988872 2249999999999999999999998643
Q ss_pred hhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHH
Q 036198 211 ANTYNILGMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEE 290 (499)
Q Consensus 211 ~~~~~~la~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~ 290 (499)
+|..+|..++.++...|++++|++.++...+. .++..+.+.++.+|.+.|++++
T Consensus 59 ---------------------~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~-----~~~~~i~~~Li~~Y~Klg~l~e 112 (449)
T 1b89_A 59 ---------------------DDPSSYMEVVQAANTSGNWEELVKYLQMARKK-----ARESYVETELIFALAKTNRLAE 112 (449)
T ss_dssp ----------------------------------------------------------------------------CHHH
T ss_pred ---------------------CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh-----CccchhHHHHHHHHHHhCCHHH
Confidence 36778899999999999999999977776663 2457888999999999999999
Q ss_pred HHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 036198 291 CFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIE 370 (499)
Q Consensus 291 a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 370 (499)
+.++++ .|+..+|..+...|...|.+++|..+|..+ ..|..+..++.+.|++++|.+.+.++
T Consensus 113 ~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n~~~LA~~L~~Lg~yq~AVea~~KA-- 174 (449)
T 1b89_A 113 LEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA-- 174 (449)
T ss_dssp HTTTTT-------CC----------------CTTTHHHHHHHT---------TCHHHHHHHHHTTTCHHHHHHHHHHH--
T ss_pred HHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------hhHHHHHHHHHHhccHHHHHHHHHHc--
Confidence 998884 377789999999999999999999999976 48999999999999999999999988
Q ss_pred CCCCcChhhHHHHHHHHHhcCCchHHHHHHHHHhHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHH
Q 036198 371 VGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKF 450 (499)
Q Consensus 371 ~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~ 450 (499)
.+..+|..++.+|...|+++.|......+ ..++.-...++..|.+.|++++|..+++...... +-....|
T Consensus 175 ----~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L-----~~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~f 244 (449)
T 1b89_A 175 ----NSTRTWKEVCFACVDGKEFRLAQMCGLHI-----VVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMF 244 (449)
T ss_dssp ----TCHHHHHHHHHHHHHTTCHHHHHHTTTTT-----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHH
T ss_pred ----CCchhHHHHHHHHHHcCcHHHHHHHHHHH-----HhCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHH
Confidence 37899999999999999999996655542 2344445578999999999999999999887654 3455666
Q ss_pred HHHHHHHHhc
Q 036198 451 DSYLMQLSVI 460 (499)
Q Consensus 451 ~~ll~~~~~~ 460 (499)
.-+..+|++-
T Consensus 245 tel~il~~ky 254 (449)
T 1b89_A 245 TELAILYSKF 254 (449)
T ss_dssp HHHHHHHHTT
T ss_pred HHHHHHHHhc
Confidence 6666666553
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.61 E-value=5.2e-13 Score=119.99 Aligned_cols=228 Identities=14% Similarity=0.112 Sum_probs=195.9
Q ss_pred CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC--CcC----
Q 036198 233 DNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGC--LPD---- 306 (499)
Q Consensus 233 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~--~~~---- 306 (499)
....+..+...+...|++++|+..|++..+.. .+..++..+...+...|++++|...+++..+... .++
T Consensus 4 ~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~-----~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~ 78 (258)
T 3uq3_A 4 MADKEKAEGNKFYKARQFDEAIEHYNKAWELH-----KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVI 78 (258)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-----CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHhh-----ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHH
Confidence 35678889999999999999999999998874 4678999999999999999999999999887531 112
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcChhhHHHHHHH
Q 036198 307 VSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISM 386 (499)
Q Consensus 307 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~ 386 (499)
..++..+...+...|++++|.+.++...+.. |+. ..+.+.|++++|...++.+.... +.+...+..+...
T Consensus 79 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~-------~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~ 148 (258)
T 3uq3_A 79 SKSFARIGNAYHKLGDLKKTIEYYQKSLTEH--RTA-------DILTKLRNAEKELKKAEAEAYVN-PEKAEEARLEGKE 148 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCH-------HHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHhcC--chh-------HHHHHHhHHHHHHHHHHHHHHcC-cchHHHHHHHHHH
Confidence 5788899999999999999999999998853 442 45677789999999999998854 2346688899999
Q ss_pred HHhcCCchHHHHHHHHHhHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 036198 387 YFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAI 466 (499)
Q Consensus 387 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a 466 (499)
+...|++++|.+.+++..+.. +.+...+..+...|...|++++|...+++..+... .+...+..+..++...|++++|
T Consensus 149 ~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~g~~~~A 226 (258)
T 3uq3_A 149 YFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDP-NFVRAYIRKATAQIAVKEYASA 226 (258)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhcCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCH-HHHHHHHHHHHHHHHHhhHHHH
Confidence 999999999999999998763 33678899999999999999999999999998763 4688899999999999999999
Q ss_pred HHHHHHHHhhc
Q 036198 467 HKLSDHMRKFY 477 (499)
Q Consensus 467 ~~~~~~m~~~~ 477 (499)
.+.+++..+..
T Consensus 227 ~~~~~~a~~~~ 237 (258)
T 3uq3_A 227 LETLDAARTKD 237 (258)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhC
Confidence 99999999887
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.61 E-value=1e-12 Score=129.65 Aligned_cols=333 Identities=10% Similarity=-0.020 Sum_probs=185.6
Q ss_pred CHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHHhhhcCCC-CCHHHHHHHHHHHHhC--
Q 036198 114 EPLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLMILKQYTEKIKVKTQ-PEINALNLLLDALCKC-- 190 (499)
Q Consensus 114 ~~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~li~~~~~~-- 190 (499)
...+|+.+..++. ..|++++|...+++........ ..... ....++.....++...
T Consensus 93 ~~~~~~nla~~y~----~~g~~~~A~~~~~ka~~i~~~~-----------------~~~~~~~~~~~~~~~g~~~~~~~~ 151 (472)
T 4g1t_A 93 SLVTWGNYAWVYY----HMGRLSDVQIYVDKVKHVCEKF-----------------SSPYRIESPELDCEEGWTRLKCGG 151 (472)
T ss_dssp THHHHHHHHHHHH----HTTCHHHHHHHHHHHHHHHHHS-----------------CCSSCCCCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHH----HcCChHHHHHHHHHHHHHhHhc-----------------ccccchhhHHHHHHHHHHHHHHcc
Confidence 5678999999999 9999999999998876432100 00011 2345666666666554
Q ss_pred CChHHHHHHHHHhhcCCCCChhhHHHH---------------HHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCCHh
Q 036198 191 GLVDYAETICKRVKNKVKPNANTYNIL---------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCK----ARMVT 251 (499)
Q Consensus 191 g~~~~A~~~~~~m~~~~~p~~~~~~~l---------------a~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~ 251 (499)
+++++|.+.|++..+..|.+...+..+ |++.++...+... .+...+..+...+.. .|+++
T Consensus 152 ~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p-~~~~~~~~l~~~~~~~~~~~~~~~ 230 (472)
T 4g1t_A 152 NQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNP-DNQYLKVLLALKLHKMREEGEEEG 230 (472)
T ss_dssp THHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCS-SCHHHHHHHHHHHHHCC------C
T ss_pred ccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCC-cchHHHHHHHHHHHHHHhhhhHHH
Confidence 568999999998876433344333333 4445555544332 244555555444443 35567
Q ss_pred HHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhc-----------
Q 036198 252 EAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLA----------- 320 (499)
Q Consensus 252 ~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~----------- 320 (499)
+|.+.+++..... +.+..++..+...|...|++++|...+++..+.. +-+..++..+...|...
T Consensus 231 ~a~~~~~~al~~~----~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~y~~~~~~~~~~~~~~ 305 (472)
T 4g1t_A 231 EGEKLVEEALEKA----PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI-PNNAYLHCQIGCCYRAKVFQVMNLRENG 305 (472)
T ss_dssp HHHHHHHHHHHHC----SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHhC----ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CChHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 7777777777664 4456677777777888888888888887777653 23444555554444321
Q ss_pred --------CCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcChh--hHHHHHH-HHHh
Q 036198 321 --------GKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQ--TYNMLIS-MYFE 389 (499)
Q Consensus 321 --------g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~--~~~~li~-~~~~ 389 (499)
+..+.|...++...+.+. .+..++..+...+...|++++|...|++..+....+... .+..+.. ....
T Consensus 306 ~~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~ 384 (472)
T 4g1t_A 306 MYGKRKLLELIGHAVAHLKKADEAND-NLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQ 384 (472)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHCT-TTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhhHHHHHHHHHHHhhcCC-chhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHH
Confidence 234556666666555432 245566777777777777777877777777654322211 1222222 2335
Q ss_pred cCCchHHHHHHHHHhHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 036198 390 LGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKL 469 (499)
Q Consensus 390 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~ 469 (499)
.|+.++|...|++..+. .|+...... ....+..+++...... +.+..+|..+..+|...|++++|.+.
T Consensus 385 ~~~~~~Ai~~y~kal~i--~~~~~~~~~---------~~~~l~~~~~~~l~~~-p~~~~~~~~LG~~~~~~g~~~~A~~~ 452 (472)
T 4g1t_A 385 MKCEDKAIHHFIEGVKI--NQKSREKEK---------MKDKLQKIAKMRLSKN-GADSEALHVLAFLQELNEKMQQADED 452 (472)
T ss_dssp SSCHHHHHHHHHHHHHS--CCCCHHHHH---------HHHHHHHHHHHHHHHC-C-CTTHHHHHHHHHHHHHHCC-----
T ss_pred CCCHHHHHHHHHHHHhc--CcccHHHHH---------HHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 67777777777777664 343322211 1233344555555444 34678999999999999999999999
Q ss_pred HHHHHhhcChhHHHHHH
Q 036198 470 SDHMRKFYNPVIARRLA 486 (499)
Q Consensus 470 ~~~m~~~~~~~~~~~~~ 486 (499)
+++..+..+..+....+
T Consensus 453 y~kALe~~~~~p~a~~~ 469 (472)
T 4g1t_A 453 SERGLESGSLIPSASSW 469 (472)
T ss_dssp -----------------
T ss_pred HHHHHhcCCCCCcHhhc
Confidence 99999877665554433
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.58 E-value=3.1e-13 Score=118.35 Aligned_cols=209 Identities=10% Similarity=-0.009 Sum_probs=104.7
Q ss_pred CCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHhHH
Q 036198 232 PDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYK 311 (499)
Q Consensus 232 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~ 311 (499)
++...+..+...+.+.|++++|+..|++..+.. +.+...+..+...+.+.|++++|...|++..+.. +.+...+.
T Consensus 3 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~----p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~ 77 (217)
T 2pl2_A 3 TAEQNPLRLGVQLYALGRYDAALTLFERALKEN----PQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYM 77 (217)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS----SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHH
Confidence 455666777777777777777777777777654 3456677777777777777777777777777653 33455666
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcChhhHHHHHHHHHhcC
Q 036198 312 EVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELG 391 (499)
Q Consensus 312 ~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~ 391 (499)
.+...+...+. .. .. .+...|++++|...+++..+... -+...+..+..++...|
T Consensus 78 ~lg~~~~~~~~------------~~---~~---------~~~~~g~~~~A~~~~~~al~~~P-~~~~~~~~lg~~~~~~g 132 (217)
T 2pl2_A 78 VLSEAYVALYR------------QA---ED---------RERGKGYLEQALSVLKDAERVNP-RYAPLHLQRGLVYALLG 132 (217)
T ss_dssp HHHHHHHHHHH------------TC---SS---------HHHHHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhhh------------hh---hh---------hcccccCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHcC
Confidence 66666665500 00 00 00111445555555554444321 12334444444555555
Q ss_pred CchHHHHHHHHHhHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 036198 392 EPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSD 471 (499)
Q Consensus 392 ~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~ 471 (499)
++++|...|++..+.. .+...+..+..+|...|++++|...+++..+... -+...+..+..++...|++++|.+.++
T Consensus 133 ~~~~A~~~~~~al~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P-~~~~~~~~la~~~~~~g~~~~A~~~~~ 209 (217)
T 2pl2_A 133 ERDKAEASLKQALALE--DTPEIRSALAELYLSMGRLDEALAQYAKALEQAP-KDLDLRVRYASALLLKGKAEEAARAAA 209 (217)
T ss_dssp CHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHTC------------
T ss_pred ChHHHHHHHHHHHhcc--cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHccCHHHHHHHHH
Confidence 5555555555544443 3444445555555555555555555555544431 234444455555555555555555544
Q ss_pred HH
Q 036198 472 HM 473 (499)
Q Consensus 472 ~m 473 (499)
+.
T Consensus 210 ~~ 211 (217)
T 2pl2_A 210 LE 211 (217)
T ss_dssp --
T ss_pred HH
Confidence 43
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.57 E-value=2.8e-12 Score=114.95 Aligned_cols=201 Identities=11% Similarity=0.004 Sum_probs=130.1
Q ss_pred HHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHhHHHH
Q 036198 234 NFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEV 313 (499)
Q Consensus 234 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l 313 (499)
...+..+...+...|++++|.+.|+++.+.. +.+..++..+...+...|++++|.+.++++.+.. +.+...+..+
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~----~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l 111 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID----PSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNY 111 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC----CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHH
Confidence 4567777778888888888888888887764 3456777777888888888888888888777653 3356666777
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCC-CHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcChhhHHHHHHHHHhcCC
Q 036198 314 LEGMCLAGKVEEAYKFLEEMGNKGYPP-DIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGE 392 (499)
Q Consensus 314 l~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~ 392 (499)
...+...|++++|.+.++++.+.+..| +...+..+...+...|++++|...++++.+.. +.+...+..+...|...|+
T Consensus 112 a~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~ 190 (252)
T 2ho1_A 112 GGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKERE 190 (252)
T ss_dssp HHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCC
Confidence 777777777777777777776632223 34556666666666777777777776666543 1234555556666666666
Q ss_pred chHHHHHHHHHhHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHC
Q 036198 393 PDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNK 441 (499)
Q Consensus 393 ~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 441 (499)
+++|...++.+.+.. +.+...+..+...+...|+.++|.++++++.+.
T Consensus 191 ~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 191 YVPARQYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp HHHHHHHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 666666666655432 234445555555555556666666665555544
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.57 E-value=3.7e-13 Score=117.87 Aligned_cols=179 Identities=9% Similarity=-0.037 Sum_probs=138.6
Q ss_pred CcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcChhhHHHH
Q 036198 304 LPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNML 383 (499)
Q Consensus 304 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l 383 (499)
+++...+..+...+.+.|++++|...|++..+.... +...+..+...+.+.|++++|...+++..+.. +.+...+..+
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~l 79 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQ-DPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVL 79 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHH
Confidence 345556666667777777777777777777665432 56667777777777777777777777777653 1245566677
Q ss_pred HHHHHhc-----------CCchHHHHHHHHHhHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 036198 384 ISMYFEL-----------GEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDS 452 (499)
Q Consensus 384 i~~~~~~-----------~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ 452 (499)
..++... |++++|...+++..+.. +-+...+..+...+...|++++|...+++..+.. .+...+..
T Consensus 80 g~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~ 156 (217)
T 2pl2_A 80 SEAYVALYRQAEDRERGKGYLEQALSVLKDAERVN-PRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSA 156 (217)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHH
T ss_pred HHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHH
Confidence 7777777 99999999999998753 2257788889999999999999999999999887 68899999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhhcChhHHHHHHH
Q 036198 453 YLMQLSVIGDLGAIHKLSDHMRKFYNPVIARRLAL 487 (499)
Q Consensus 453 ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ 487 (499)
+..+|...|++++|...+++..+..|....-.+.+
T Consensus 157 la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~l 191 (217)
T 2pl2_A 157 LAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRY 191 (217)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHH
Confidence 99999999999999999999999888766555444
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.57 E-value=1.9e-12 Score=116.03 Aligned_cols=208 Identities=12% Similarity=0.055 Sum_probs=180.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHH
Q 036198 272 AKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKV 351 (499)
Q Consensus 272 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~ 351 (499)
...+..+...+...|++++|...|+++.+.. +.+...+..+...+...|++++|.+.++++.+... .+...+..+...
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~ 114 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASDS-RNARVLNNYGGF 114 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc-CcHHHHHHHHHH
Confidence 5678888899999999999999999998864 45678899999999999999999999999887643 367889999999
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCc-ChhhHHHHHHHHHhcCCchHHHHHHHHHhHCCCCCCHHHHHHHHHHHHhCCCHHH
Q 036198 352 LCDNKNGDEALRLYGRMIEVGCWP-SVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEE 430 (499)
Q Consensus 352 ~~~~g~~~~a~~~~~~m~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~ 430 (499)
+...|++++|.+.++++.+.+..| +...+..+...+...|++++|.+.+++..+.. +.+...+..+...+...|++++
T Consensus 115 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~ 193 (252)
T 2ho1_A 115 LYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKEREYVP 193 (252)
T ss_dssp HHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCHHH
Confidence 999999999999999998743344 45678889999999999999999999988753 3357888999999999999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcChhHHH
Q 036198 431 ACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHMRKFYNPVIAR 483 (499)
Q Consensus 431 a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~ 483 (499)
|...++++.+... .+...+..+...+...|+.++|.++++++.+.++....-
T Consensus 194 A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 245 (252)
T 2ho1_A 194 ARQYYDLFAQGGG-QNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSLEY 245 (252)
T ss_dssp HHHHHHHHHTTSC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSHHH
T ss_pred HHHHHHHHHHhCc-CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHHH
Confidence 9999999987653 577788889999999999999999999999988775543
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.57 E-value=2.2e-12 Score=113.17 Aligned_cols=201 Identities=6% Similarity=-0.071 Sum_probs=99.6
Q ss_pred CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHhHHH
Q 036198 233 DNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKE 312 (499)
Q Consensus 233 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ 312 (499)
+...+..+...+...|++++|.+.|+++.+.. +.+...+..+...+...|++++|...+++..+.. +.+..++..
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~ 81 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSD----PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNN 81 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC----ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHH
Confidence 34455566666666666666666666666553 3345556666666666666666666666655542 234445555
Q ss_pred HHHHHHhc-CCHHHHHHHHHHHHhCCCCCC-HhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcChhhHHHHHHHHHhc
Q 036198 313 VLEGMCLA-GKVEEAYKFLEEMGNKGYPPD-IVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFEL 390 (499)
Q Consensus 313 ll~~~~~~-g~~~~a~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 390 (499)
+...+... |++++|.+.++.+.+.+..|+ ...+..+...+...|++++|...++++.+.. +.+...+..+...+...
T Consensus 82 l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~ 160 (225)
T 2vq2_A 82 YGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLA 160 (225)
T ss_dssp HHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHc
Confidence 55555555 555555555555554211121 3344445555555555555555555554432 11233444444444444
Q ss_pred CCchHHHHHHHHHhHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 036198 391 GEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVV 439 (499)
Q Consensus 391 ~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 439 (499)
|++++|.+.++...+.....+...+..+...+...|+.++|..+++.+.
T Consensus 161 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 209 (225)
T 2vq2_A 161 GQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQ 209 (225)
T ss_dssp TCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 4444444444444332111233333334444444444444444444443
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.56 E-value=1.2e-12 Score=117.65 Aligned_cols=229 Identities=11% Similarity=0.018 Sum_probs=193.3
Q ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHhhcCCCCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHH
Q 036198 177 INALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADL 256 (499)
Q Consensus 177 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~~~~~la~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~ 256 (499)
...|..+...+...|++++|.+.|++..+ .. .+...+..+..++...|++++|++.
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~----------------------~~--~~~~~~~~~~~~~~~~~~~~~A~~~ 60 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWE----------------------LH--KDITYLNNRAAAEYEKGEYETAIST 60 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH----------------------HS--CCTHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHH----------------------hh--ccHHHHHHHHHHHHHcccHHHHHHH
Confidence 45788899999999999999999988754 12 5778899999999999999999999
Q ss_pred HHHHHHcCCCCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHH
Q 036198 257 FEFMRTKGSTISSPT----AKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEE 332 (499)
Q Consensus 257 ~~~m~~~~~~~~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~ 332 (499)
|++..+.... ..++ ..++..+...+...|++++|...|++..+.. |+. ..+.+.|++++|.+.++.
T Consensus 61 ~~~a~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~-------~~~~~~~~~~~a~~~~~~ 130 (258)
T 3uq3_A 61 LNDAVEQGRE-MRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEH--RTA-------DILTKLRNAEKELKKAEA 130 (258)
T ss_dssp HHHHHHHHHH-TTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCH-------HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCcc-cccchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcC--chh-------HHHHHHhHHHHHHHHHHH
Confidence 9998875421 1122 5889999999999999999999999999863 443 456777899999999999
Q ss_pred HHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcChhhHHHHHHHHHhcCCchHHHHHHHHHhHCCCCCCH
Q 036198 333 MGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDV 412 (499)
Q Consensus 333 m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~ 412 (499)
+..... .+...+..+...+...|++++|...+++..+.. +.+..++..+..+|...|++++|...++...+.. +.+.
T Consensus 131 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~ 207 (258)
T 3uq3_A 131 EAYVNP-EKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFV 207 (258)
T ss_dssp HHHCCH-HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCH
T ss_pred HHHcCc-chHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-HHHH
Confidence 988642 256778889999999999999999999998864 2467889999999999999999999999998763 3357
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHCC
Q 036198 413 DTYCVMIDGLFDCSKVEEACFLLEEVVNKG 442 (499)
Q Consensus 413 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 442 (499)
..|..+...+...|++++|...+++..+..
T Consensus 208 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 237 (258)
T 3uq3_A 208 RAYIRKATAQIAVKEYASALETLDAARTKD 237 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHhC
Confidence 889999999999999999999999987653
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.56 E-value=4.8e-12 Score=111.00 Aligned_cols=214 Identities=7% Similarity=-0.011 Sum_probs=182.0
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHH
Q 036198 269 SPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCF 348 (499)
Q Consensus 269 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l 348 (499)
+.+...+..+...+...|++++|.+.|+.+.+.. +.+...+..+...+...|++++|.+.++...+... .+..++..+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l 82 (225)
T 2vq2_A 5 NQVSNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKP-DSAEINNNY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC-CChHHHHHH
Confidence 3456788899999999999999999999998864 45678899999999999999999999999887643 367889999
Q ss_pred HHHHHHc-CCHHHHHHHHHHHHHCCCCcC-hhhHHHHHHHHHhcCCchHHHHHHHHHhHCCCCCCHHHHHHHHHHHHhCC
Q 036198 349 LKVLCDN-KNGDEALRLYGRMIEVGCWPS-VQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCS 426 (499)
Q Consensus 349 i~~~~~~-g~~~~a~~~~~~m~~~~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g 426 (499)
...+... |++++|...++++.+.+..|+ ...+..+..++...|++++|.+.++++.+.. +.+...+..+...+...|
T Consensus 83 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~ 161 (225)
T 2vq2_A 83 GWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLAG 161 (225)
T ss_dssp HHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHcC
Confidence 9999999 999999999999988333343 5788889999999999999999999988753 235788999999999999
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcChhHHHHH
Q 036198 427 KVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHMRKFYNPVIARRL 485 (499)
Q Consensus 427 ~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~ 485 (499)
++++|...++++.+.....+...+..+...+...|+.+.|..+++.+.+.++....-..
T Consensus 162 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~ 220 (225)
T 2vq2_A 162 QLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANFPYSEELQT 220 (225)
T ss_dssp CHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHH
Confidence 99999999999988753247778888888889999999999999999988776655443
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.55 E-value=9.8e-13 Score=119.41 Aligned_cols=244 Identities=9% Similarity=-0.037 Sum_probs=193.3
Q ss_pred CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcC--HHhH
Q 036198 233 DNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPD--VSTY 310 (499)
Q Consensus 233 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~--~~~~ 310 (499)
|...+......+...|++++|+..|++..+.. +.+...+..+...+...|++++|...+++..+.+..++ ...|
T Consensus 2 n~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~----p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~ 77 (272)
T 3u4t_A 2 NDDVEFRYADFLFKNNNYAEAIEVFNKLEAKK----YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADF 77 (272)
T ss_dssp ---CHHHHHHHHHTTTCHHHHHHHHHHHHHTT----CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHH
T ss_pred cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC----CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHH
Confidence 34456677888999999999999999999875 33556888899999999999999999999998432222 2348
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcChhhHHHHHHHHHhc
Q 036198 311 KEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFEL 390 (499)
Q Consensus 311 ~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 390 (499)
..+...+...|++++|.+.|+...+.... +..++..+...|...|++++|...+++..+.. +.+...+..+...+...
T Consensus 78 ~~lg~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~ 155 (272)
T 3u4t_A 78 EYYGKILMKKGQDSLAIQQYQAAVDRDTT-RLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYN 155 (272)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHH
Confidence 88999999999999999999999886433 66789999999999999999999999988763 23456777777344455
Q ss_pred CCchHHHHHHHHHhHCCCCCCHHHHHHHHHHHHhCCC---HHHHHHHHHHHHHCC-CCCC------HHHHHHHHHHHHhc
Q 036198 391 GEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSK---VEEACFLLEEVVNKG-LKLP------YRKFDSYLMQLSVI 460 (499)
Q Consensus 391 ~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~---~~~a~~~~~~m~~~~-~~p~------~~~~~~ll~~~~~~ 460 (499)
+++++|.+.++...+.. +.+...+..+...+...|+ +++|...++++.+.. -.|+ ...|..+...|...
T Consensus 156 ~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 234 (272)
T 3u4t_A 156 KEYVKADSSFVKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTIN 234 (272)
T ss_dssp TCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHc
Confidence 69999999999998753 2346777778888887787 888888888877542 1133 25778888999999
Q ss_pred CCHHHHHHHHHHHHhhcChhHHH
Q 036198 461 GDLGAIHKLSDHMRKFYNPVIAR 483 (499)
Q Consensus 461 g~~~~a~~~~~~m~~~~~~~~~~ 483 (499)
|++++|.+.+++..+..|....-
T Consensus 235 ~~~~~A~~~~~~al~~~p~~~~a 257 (272)
T 3u4t_A 235 RDKVKADAAWKNILALDPTNKKA 257 (272)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHH
T ss_pred CCHHHHHHHHHHHHhcCccHHHH
Confidence 99999999999999988775543
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.53 E-value=9.3e-13 Score=119.68 Aligned_cols=250 Identities=8% Similarity=-0.002 Sum_probs=191.4
Q ss_pred hCCChHHHHHHHHHhhcCCCCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCC
Q 036198 189 KCGLVDYAETICKRVKNKVKPNANTYNILGMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTIS 268 (499)
Q Consensus 189 ~~g~~~~A~~~~~~m~~~~~p~~~~~~~la~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~ 268 (499)
..|++++|.+.|+++.+..+.+ .+.+..++..+..++...|++++|...|++..+..
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~-------------------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~---- 73 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALT-------------------DDERAQLLYERGVLYDSLGLRALARNDFSQALAIR---- 73 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCC-------------------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----
T ss_pred ccchHHHHHHHHHHHHhccccc-------------------CchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC----
Confidence 4578889999988876531100 01146788899999999999999999999999875
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHH
Q 036198 269 SPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCF 348 (499)
Q Consensus 269 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l 348 (499)
+.+..+|..+...+...|++++|...|++..+.. +.+...+..+...+...|++++|.+.++.+.+.. |+.......
T Consensus 74 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--~~~~~~~~~ 150 (275)
T 1xnf_A 74 PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD--PNDPFRSLW 150 (275)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHH
T ss_pred CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCChHHHHH
Confidence 4578899999999999999999999999999864 4467888999999999999999999999998753 444445555
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCcChhhHHHHHHHHHhcCCchHHHHHHHHHhHCCCC--C-CHHHHHHHHHHHHhC
Q 036198 349 LKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCA--Q-DVDTYCVMIDGLFDC 425 (499)
Q Consensus 349 i~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~--p-~~~~~~~li~~~~~~ 425 (499)
+..+...|++++|...+++..... .++...+ .++..+...++.++|.+.+....+.... | +...+..+...|...
T Consensus 151 ~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~ 228 (275)
T 1xnf_A 151 LYLAEQKLDEKQAKEVLKQHFEKS-DKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSL 228 (275)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHHS-CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHhcCHHHHHHHHHHHHhcC-CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHc
Confidence 556677899999999998877653 2333444 4777778888889999999988664211 1 156788899999999
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 036198 426 SKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLS 470 (499)
Q Consensus 426 g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~ 470 (499)
|++++|...++++.+.. |+. +.....++...|++++|.+.+
T Consensus 229 g~~~~A~~~~~~al~~~--p~~--~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 229 GDLDSATALFKLAVANN--VHN--FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp TCHHHHHHHHHHHHTTC--CTT--CHHHHHHHHHHHHHHHC----
T ss_pred CCHHHHHHHHHHHHhCC--chh--HHHHHHHHHHHHHHHhhHHHH
Confidence 99999999999998765 422 233355677888888887765
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.53 E-value=1.9e-10 Score=121.13 Aligned_cols=356 Identities=13% Similarity=0.104 Sum_probs=246.7
Q ss_pred CCCCCCHHHHHHHHHccCCChHHHHHHHHHhhc-CCCCCCCHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHHHcCCCcc
Q 036198 75 LGVPLTTDSVVGVLQRFQFEEKIAFRFFMWAGH-QDNYAHEPLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFV 153 (499)
Q Consensus 75 ~~~~~~~~~~~~~l~~~~~~~~~a~~~f~~~~~-~~~~~~~~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~ 153 (499)
+-..-+++++..+|..- ...-..+.+|... ...-+.++.--...++.|. ..|.+.+|.+++++..-.+....
T Consensus 947 lv~r~d~~lW~~vl~~~---n~~RR~Lidqv~a~aL~e~~~PeeVs~~vKaf~----~aglp~EaieLLEKivl~~s~fs 1019 (1630)
T 1xi4_A 947 LVRRKDPELWGSVLLES---NPYRRPLIDQVVQTALSETQDPEEVSVTVKAFM----TADLPNELIELLEKIVLDNSVFS 1019 (1630)
T ss_pred HHHhcCHHHHHHHhcCC---cHHHHHHHHHHHHhhcccccCHHHhHHHHHHHH----hCCCHHHHHHHHHHHHcCCCccc
Confidence 33456778888888442 2223445555321 0111235555677788888 89999999999999985532111
Q ss_pred cHHHHHH-HHHHHHHh-----hhcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHhhcCCCCChhhHHHH--HHHHHHHH
Q 036198 154 PVDVLLM-ILKQYTEK-----IKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNIL--GMQTLEEM 225 (499)
Q Consensus 154 ~~~~~~~-~l~~~~~~-----~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~~~~~l--a~~~~~~m 225 (499)
+...+.. +++.-.+. ...-...+......+...+...|.+++|.++|++... .....+.+ ...-+++.
T Consensus 1020 ~n~~LqnlLi~tAIkaD~~Rv~eyI~kLd~~d~~eIA~Iai~lglyEEAf~IYkKa~~----~~~A~~VLie~i~nldrA 1095 (1630)
T 1xi4_A 1020 EHRNLQNLLILTAIKADRTRVMEYINRLDNYDAPDIANIAISNELFEEAFAIFRKFDV----NTSAVQVLIEHIGNLDRA 1095 (1630)
T ss_pred ccHHHHHHHHHHHHHhChhhHHHHHHHhhhccHHHHHHHHHhCCCHHHHHHHHHHcCC----HHHHHHHHHHHHhhHHHH
Confidence 1111211 22222222 0000011222244567888899999999999999742 11111222 11222222
Q ss_pred HHc--CCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 036198 226 IQM--GHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGC 303 (499)
Q Consensus 226 ~~~--g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~ 303 (499)
.+. .+ -+..+|..+..++.+.|++++|++.|.+. -|...|.-++.++.+.|++++|.+.+....+..
T Consensus 1096 iE~Aerv-n~p~vWsqLAKAql~~G~~kEAIdsYiKA---------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~- 1164 (1630)
T 1xi4_A 1096 YEFAERC-NEPAVWSQLAKAQLQKGMVKEAIDSYIKA---------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA- 1164 (1630)
T ss_pred HHHHHhc-CCHHHHHHHHHHHHhCCCHHHHHHHHHhc---------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc-
Confidence 211 12 25788999999999999999999999653 367888999999999999999999999877764
Q ss_pred CcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcChhhHHHH
Q 036198 304 LPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNML 383 (499)
Q Consensus 304 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l 383 (499)
++....+.+..+|++.+++++...+. + .++...|..+...|...|++++|..+|... ..|..+
T Consensus 1165 -~e~~Idt~LafaYAKl~rleele~fI----~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rL 1227 (1630)
T 1xi4_A 1165 -RESYVETELIFALAKTNRLAELEEFI----N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRL 1227 (1630)
T ss_pred -ccccccHHHHHHHHhhcCHHHHHHHH----h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHH
Confidence 44444456999999999988644443 2 246677888999999999999999999985 489999
Q ss_pred HHHHHhcCCchHHHHHHHHHhHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 036198 384 ISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDL 463 (499)
Q Consensus 384 i~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~ 463 (499)
..+|++.|++++|.+.+++. -+..+|..+-.+|...|++..|...... +..++..+..++..|.+.|.+
T Consensus 1228 A~tLvkLge~q~AIEaarKA------~n~~aWkev~~acve~~Ef~LA~~cgl~-----Iiv~~deLeeli~yYe~~G~f 1296 (1630)
T 1xi4_A 1228 ASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLH-----IVVHADELEELINYYQDRGYF 1296 (1630)
T ss_pred HHHHHHhCCHHHHHHHHHHh------CCHHHHHHHHHHHhhhhHHHHHHHHHHh-----hhcCHHHHHHHHHHHHHcCCH
Confidence 99999999999999999876 2567888888888888888888776543 345666777888888889999
Q ss_pred HHHHHHHHHHHhhcChh
Q 036198 464 GAIHKLSDHMRKFYNPV 480 (499)
Q Consensus 464 ~~a~~~~~~m~~~~~~~ 480 (499)
++|..+++......+.+
T Consensus 1297 eEAI~LlE~aL~LeraH 1313 (1630)
T 1xi4_A 1297 EELITMLEAALGLERAH 1313 (1630)
T ss_pred HHHHHHHHHHhccChhH
Confidence 99888888876655443
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.52 E-value=6.8e-12 Score=113.82 Aligned_cols=251 Identities=10% Similarity=0.010 Sum_probs=195.0
Q ss_pred HHHHHHHHHHHhCCChHHHHHHHHHhhcCCCCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHH
Q 036198 178 NALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLF 257 (499)
Q Consensus 178 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~~~~~la~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~ 257 (499)
..+......+...|++++|...|++..+. .+.+...+..+..++...|++++|++.|
T Consensus 4 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~-----------------------~p~~~~~~~~l~~~~~~~~~~~~A~~~~ 60 (272)
T 3u4t_A 4 DVEFRYADFLFKNNNYAEAIEVFNKLEAK-----------------------KYNSPYIYNRRAVCYYELAKYDLAQKDI 60 (272)
T ss_dssp -CHHHHHHHHHTTTCHHHHHHHHHHHHHT-----------------------TCCCSTTHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHh-----------------------CCCcHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 45566778889999999999999988652 1124557888899999999999999999
Q ss_pred HHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 036198 258 EFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKG 337 (499)
Q Consensus 258 ~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~ 337 (499)
++..+.... ......+|..+...+...|++++|...|++..+.. +.+...+..+...|...|++++|.+.+++..+..
T Consensus 61 ~~a~~~~~~-~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~ 138 (272)
T 3u4t_A 61 ETYFSKVNA-TKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT 138 (272)
T ss_dssp HHHHTTSCT-TTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS
T ss_pred HHHHhccCc-hhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC
Confidence 999984311 22335668999999999999999999999999864 4466789999999999999999999999988773
Q ss_pred CCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcChhhHHHHHHHHHhcCC---chHHHHHHHHHhHCC-CCCC--
Q 036198 338 YPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGE---PDGAFETWHEMDKRG-CAQD-- 411 (499)
Q Consensus 338 ~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~---~~~a~~~~~~m~~~~-~~p~-- 411 (499)
+.+...|..+...+...+++++|...|+++.+.. +.+...+..+..++...|+ +++|...+++..+.. -.|+
T Consensus 139 -~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~ 216 (272)
T 3u4t_A 139 -TTDPKVFYELGQAYYYNKEYVKADSSFVKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKY 216 (272)
T ss_dssp -CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGG
T ss_pred -CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccc
Confidence 3356677777734455679999999999998854 2346777788888888888 888999998876541 1233
Q ss_pred ----HHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 036198 412 ----VDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQ 456 (499)
Q Consensus 412 ----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~ 456 (499)
..+|..+...|...|++++|.+.+++..+... -+......+...
T Consensus 217 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p-~~~~a~~~l~~~ 264 (272)
T 3u4t_A 217 KDELIEANEYIAYYYTINRDKVKADAAWKNILALDP-TNKKAIDGLKMK 264 (272)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHC--
T ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCc-cHHHHHHHhhhh
Confidence 25778888899999999999999999998762 245555444433
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.52 E-value=4.3e-11 Score=108.68 Aligned_cols=224 Identities=8% Similarity=-0.010 Sum_probs=196.9
Q ss_pred CHHHHHHHHHHHHhCCChHHHHHHHHHhhcCCCCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCCHh
Q 036198 176 EINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQTLEEMIQMGHAPDNFTYNTAIDTFCK----ARMVT 251 (499)
Q Consensus 176 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~~~~~la~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~ 251 (499)
+..++..+...+...|++++|.+.|++..+ +-+...+..+...|.. .++++
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~-------------------------~~~~~a~~~lg~~~~~g~~~~~~~~ 59 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACD-------------------------LKENSGCFNLGVLYYQGQGVEKNLK 59 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-------------------------TTCHHHHHHHHHHHHHTSSSCCCHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHH-------------------------CCCHHHHHHHHHHHHcCCCcCCCHH
Confidence 567888899999999999999999988754 1256678888899999 99999
Q ss_pred HHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHh----cCCH
Q 036198 252 EAADLFEFMRTKGSTISSPTAKTYAIMIVALVQ----NDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCL----AGKV 323 (499)
Q Consensus 252 ~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~----~g~~ 323 (499)
+|.+.|++..+.+ +..++..+...|.. .+++++|...|++..+.+ +...+..+...|.. .+++
T Consensus 60 ~A~~~~~~a~~~~------~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~ 130 (273)
T 1ouv_A 60 KAASFYAKACDLN------YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDF 130 (273)
T ss_dssp HHHHHHHHHHHTT------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCH
T ss_pred HHHHHHHHHHHCC------CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCH
Confidence 9999999999875 67889999999999 999999999999999875 77888889999999 9999
Q ss_pred HHHHHHHHHHHhCCCCCCHhhHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCCcChhhHHHHHHHHHh----cCCchH
Q 036198 324 EEAYKFLEEMGNKGYPPDIVTYNCFLKVLCD----NKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFE----LGEPDG 395 (499)
Q Consensus 324 ~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~----~~~~~~ 395 (499)
++|.+.|++..+.+ +...+..+...|.. .+++++|...|++..+.+ +...+..+...|.. .+++++
T Consensus 131 ~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~ 204 (273)
T 1ouv_A 131 KKAVEYFTKACDLN---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKE 204 (273)
T ss_dssp HHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHH
T ss_pred HHHHHHHHHHHhcC---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHH
Confidence 99999999999876 56778888888888 999999999999998865 46778888899999 999999
Q ss_pred HHHHHHHHhHCCCCCCHHHHHHHHHHHHh----CCCHHHHHHHHHHHHHCC
Q 036198 396 AFETWHEMDKRGCAQDVDTYCVMIDGLFD----CSKVEEACFLLEEVVNKG 442 (499)
Q Consensus 396 a~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~ 442 (499)
|.+.+++..+.+ +...+..+...|.. .+++++|.+.+++..+.|
T Consensus 205 A~~~~~~a~~~~---~~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 205 ALARYSKACELE---NGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp HHHHHHHHHHTT---CHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCC---CHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 999999998874 36678888888888 999999999999999887
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.52 E-value=1.6e-12 Score=115.74 Aligned_cols=203 Identities=13% Similarity=0.082 Sum_probs=130.7
Q ss_pred CCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHhHH
Q 036198 232 PDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYK 311 (499)
Q Consensus 232 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~ 311 (499)
.....|..+...+...|++++|...|+++.+.. +.+...+..+...+...|++++|...+++..+.. +.+...+.
T Consensus 21 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~----~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 95 (243)
T 2q7f_A 21 MASMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN----KEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYY 95 (243)
T ss_dssp ---------------------CCTTHHHHHTTC----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred hHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC----cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHH
Confidence 355667777888888888888888888888764 4567788888888888888888888888887763 34567777
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcChhhHHHHHHHHHhcC
Q 036198 312 EVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELG 391 (499)
Q Consensus 312 ~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~ 391 (499)
.+...+...|++++|.+.++++.+... .+...+..+...+.+.|++++|...++++.+.. +.+...+..+...+...|
T Consensus 96 ~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~ 173 (243)
T 2q7f_A 96 GAGNVYVVKEMYKEAKDMFEKALRAGM-ENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANEG 173 (243)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHTC-CSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcC
Confidence 777888888888888888887776542 356677777777778888888888887777643 234566667777777777
Q ss_pred CchHHHHHHHHHhHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC
Q 036198 392 EPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKG 442 (499)
Q Consensus 392 ~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 442 (499)
++++|.+.++.+.+.. +.+..++..+...|...|++++|...++++.+..
T Consensus 174 ~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 223 (243)
T 2q7f_A 174 MLDEALSQFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAIDIQ 223 (243)
T ss_dssp CCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHccC
Confidence 7777777777766542 2345566666666777777777777777666554
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.52 E-value=9.8e-13 Score=119.52 Aligned_cols=232 Identities=8% Similarity=-0.110 Sum_probs=186.2
Q ss_pred HhcCCHhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHH
Q 036198 245 CKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVE 324 (499)
Q Consensus 245 ~~~g~~~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~ 324 (499)
...|++++|+..|+++.+......+.+..++..+...+...|++++|...|++..+.. +.+...+..+...+...|+++
T Consensus 16 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~ 94 (275)
T 1xnf_A 16 QPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFD 94 (275)
T ss_dssp CCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHH
T ss_pred CccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHH
Confidence 3457899999999999987421012246788999999999999999999999999874 456889999999999999999
Q ss_pred HHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcChhhHHHHHHHHHhcCCchHHHHHHHHHh
Q 036198 325 EAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMD 404 (499)
Q Consensus 325 ~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 404 (499)
+|.+.++...+... .+..++..+...+.+.|++++|...|+++.+.. |+.......+..+...|++++|...++...
T Consensus 95 ~A~~~~~~al~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 171 (275)
T 1xnf_A 95 AAYEAFDSVLELDP-TYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD--PNDPFRSLWLYLAEQKLDEKQAKEVLKQHF 171 (275)
T ss_dssp HHHHHHHHHHHHCT-TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCc-cccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 99999999988643 267889999999999999999999999998854 555555555566677899999999998776
Q ss_pred HCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcChhH
Q 036198 405 KRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKL---PYRKFDSYLMQLSVIGDLGAIHKLSDHMRKFYNPVI 481 (499)
Q Consensus 405 ~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p---~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~ 481 (499)
... +++...+ .+...+...++.++|...+.+..+..... +...+..+..+|.+.|++++|.+.+++..+..+...
T Consensus 172 ~~~-~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 249 (275)
T 1xnf_A 172 EKS-DKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNF 249 (275)
T ss_dssp HHS-CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTC
T ss_pred hcC-CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchhH
Confidence 642 2333334 46777778888999999999886553211 157888899999999999999999999999877543
Q ss_pred H
Q 036198 482 A 482 (499)
Q Consensus 482 ~ 482 (499)
.
T Consensus 250 ~ 250 (275)
T 1xnf_A 250 V 250 (275)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.52 E-value=7.7e-12 Score=118.75 Aligned_cols=238 Identities=11% Similarity=0.035 Sum_probs=199.8
Q ss_pred HHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHcCCCcCHHhHHH
Q 036198 234 NFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDR-MEECFSLLGHMINSGCLPDVSTYKE 312 (499)
Q Consensus 234 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~-~~~a~~~~~~m~~~~~~~~~~~~~~ 312 (499)
...|..+...+.+.|++++|++.|++..+.. +-+..+|+.+..++...|+ +++|+..|++..+.. +-+...|..
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~----P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~ 171 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELN----AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHH 171 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhC----ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHH
Confidence 4678888899999999999999999999975 4578899999999999997 999999999999875 457788999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcChhhHHHHHHHHHh-cC
Q 036198 313 VLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFE-LG 391 (499)
Q Consensus 313 ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~-~~ 391 (499)
+..++...|++++|+..|+++.+.... +...|..+..++.+.|++++|+..|+++++... -+...|+.+..++.. .|
T Consensus 172 ~g~~~~~~g~~~eAl~~~~kal~ldP~-~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P-~~~~a~~~lg~~l~~l~~ 249 (382)
T 2h6f_A 172 RRVLVEWLRDPSQELEFIADILNQDAK-NYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDV-RNNSVWNQRYFVISNTTG 249 (382)
T ss_dssp HHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHccCHHHHHHHHHHHHHhCcc-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhcC
Confidence 999999999999999999999987544 788999999999999999999999999998653 367889999999999 56
Q ss_pred CchHH-----HHHHHHHhHCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC---
Q 036198 392 EPDGA-----FETWHEMDKRGCAQDVDTYCVMIDGLFDCS--KVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIG--- 461 (499)
Q Consensus 392 ~~~~a-----~~~~~~m~~~~~~p~~~~~~~li~~~~~~g--~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g--- 461 (499)
..++| ++.+++..+.. +-+...|..+...+...| ++++|.+.+.++ +.. +.+...+..+..+|.+.|
T Consensus 250 ~~~eA~~~~el~~~~~Al~l~-P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~-p~~~~al~~La~~~~~~~~~~ 326 (382)
T 2h6f_A 250 YNDRAVLEREVQYTLEMIKLV-PHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPS-HSSPYLIAFLVDIYEDMLENQ 326 (382)
T ss_dssp SCSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTT-CCCHHHHHHHHHHHHHHHHTT
T ss_pred cchHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccC-CCCHHHHHHHHHHHHHHhccc
Confidence 65888 48888877653 225678888888888888 689999999888 433 446788889999998874
Q ss_pred -----C-HHHHHHHHHHH-HhhcChhH
Q 036198 462 -----D-LGAIHKLSDHM-RKFYNPVI 481 (499)
Q Consensus 462 -----~-~~~a~~~~~~m-~~~~~~~~ 481 (499)
+ .++|.++++++ .+..+...
T Consensus 327 ~~~~~~~~~~A~~~~~~l~~~~DP~r~ 353 (382)
T 2h6f_A 327 CDNKEDILNKALELCEILAKEKDTIRK 353 (382)
T ss_dssp CSSHHHHHHHHHHHHHHHHHTTCGGGH
T ss_pred ccchHHHHHHHHHHHHHHHHHhCchhH
Confidence 3 58999999999 66655433
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.52 E-value=1.5e-12 Score=115.85 Aligned_cols=213 Identities=12% Similarity=0.051 Sum_probs=166.4
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHH
Q 036198 270 PTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFL 349 (499)
Q Consensus 270 p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li 349 (499)
.....|..+...+...|++++|...|+++.+.. +.+...+..+...+...|++++|.+.++...+... .+...+..+.
T Consensus 21 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la 98 (243)
T 2q7f_A 21 MASMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELDS-SAATAYYGAG 98 (243)
T ss_dssp ---------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-cchHHHHHHH
Confidence 345678888889999999999999999998764 45688888999999999999999999999887643 3678889999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCcChhhHHHHHHHHHhcCCchHHHHHHHHHhHCCCCCCHHHHHHHHHHHHhCCCHH
Q 036198 350 KVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVE 429 (499)
Q Consensus 350 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~ 429 (499)
..+...|++++|...++++.+.. +.+...+..+...+...|++++|.+.++++.+.. +.+...+..+...+...|+++
T Consensus 99 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~ 176 (243)
T 2q7f_A 99 NVYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANEGMLD 176 (243)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCH
T ss_pred HHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcCCHH
Confidence 99999999999999999998864 3467788999999999999999999999988753 346778889999999999999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcChhHHHHHHH
Q 036198 430 EACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHMRKFYNPVIARRLAL 487 (499)
Q Consensus 430 ~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ 487 (499)
+|...++++.+... .+..++..+..+|...|++++|.+.++++.+..+....-...+
T Consensus 177 ~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~ 233 (243)
T 2q7f_A 177 EALSQFAAVTEQDP-GHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLALHAK 233 (243)
T ss_dssp HHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHHHhCc-ccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcchHHHHHHH
Confidence 99999999988753 4688899999999999999999999999999887766655544
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.48 E-value=1.6e-10 Score=113.91 Aligned_cols=325 Identities=12% Similarity=-0.033 Sum_probs=192.3
Q ss_pred CCHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHHhhhcCCCC-CHHHHHHHHHHHHhCC
Q 036198 113 HEPLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLMILKQYTEKIKVKTQP-EINALNLLLDALCKCG 191 (499)
Q Consensus 113 ~~~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~~~li~~~~~~g 191 (499)
.....||.+..++. ..|++++|++.|++..+... +.......| ...+|+.+...|...|
T Consensus 49 ~~a~~yn~Lg~~~~----~~G~~~eAl~~~~kAl~~~~----------------~~~~~~~~~~~~~~~~nla~~y~~~g 108 (472)
T 4g1t_A 49 FKATMCNLLAYLKH----LKGQNEAALECLRKAEELIQ----------------QEHADQAEIRSLVTWGNYAWVYYHMG 108 (472)
T ss_dssp -CCHHHHHHHHHHH----HTTCHHHHHHHHHHHHHHHH----------------HHSGGGCTTTTHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHH----HCCCHHHHHHHHHHHHHHHH----------------hcCccccchHHHHHHHHHHHHHHHcC
Confidence 45678999988888 89999999999988654210 000001123 4578999999999999
Q ss_pred ChHHHHHHHHHhhcCCCCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc--CCHhHHHHHHHHHHHcCCCCCC
Q 036198 192 LVDYAETICKRVKNKVKPNANTYNILGMQTLEEMIQMGHAPDNFTYNTAIDTFCKA--RMVTEAADLFEFMRTKGSTISS 269 (499)
Q Consensus 192 ~~~~A~~~~~~m~~~~~p~~~~~~~la~~~~~~m~~~g~~p~~~~~~~li~~~~~~--g~~~~a~~~~~~m~~~~~~~~~ 269 (499)
++++|...|++..+- ..............++.....++.+. +++++|++.|++..+.. +
T Consensus 109 ~~~~A~~~~~ka~~i---------------~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~----p 169 (472)
T 4g1t_A 109 RLSDVQIYVDKVKHV---------------CEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK----P 169 (472)
T ss_dssp CHHHHHHHHHHHHHH---------------HHHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS----T
T ss_pred ChHHHHHHHHHHHHH---------------hHhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC----C
Confidence 999999999886531 00000000111344555555444443 45778888888777754 2
Q ss_pred CCHHHHHHHHHH---HHHcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCH
Q 036198 270 PTAKTYAIMIVA---LVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCL----AGKVEEAYKFLEEMGNKGYPPDI 342 (499)
Q Consensus 270 p~~~~~~~ll~~---~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~----~g~~~~a~~~~~~m~~~~~~p~~ 342 (499)
-+...+..+..+ +...++.++|++.+++..+.. +.+...+..+...+.. .|++++|.+.+++...... .+.
T Consensus 170 ~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~-~~~ 247 (472)
T 4g1t_A 170 KNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-PDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAP-GVT 247 (472)
T ss_dssp TCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-SSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCS-SCH
T ss_pred CCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-CcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCc-cHH
Confidence 234444444333 334566677777777766653 3344555544444443 3556677777777665532 255
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcChhhHHHHHHHHHhc-------------------CCchHHHHHHHHH
Q 036198 343 VTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFEL-------------------GEPDGAFETWHEM 403 (499)
Q Consensus 343 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~-------------------~~~~~a~~~~~~m 403 (499)
.++..+...|...|++++|...+++..+... -+..++..+..+|... +..+.|...++..
T Consensus 248 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a 326 (472)
T 4g1t_A 248 DVLRSAAKFYRRKDEPDKAIELLKKALEYIP-NNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKA 326 (472)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCchHHHHHHHHHHHHhCC-ChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 6677777777788888888888877776431 2344555554444321 2245566666665
Q ss_pred hHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHH--HHHHHHH-HHHhcCCHHHHHHHHHHHHhhcChh
Q 036198 404 DKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYR--KFDSYLM-QLSVIGDLGAIHKLSDHMRKFYNPV 480 (499)
Q Consensus 404 ~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~--~~~~ll~-~~~~~g~~~~a~~~~~~m~~~~~~~ 480 (499)
.+.. +.+..++..+...|...|++++|...|++..+....+... .+..+.. .....|+.++|.+.+++..+..+..
T Consensus 327 ~~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~ 405 (472)
T 4g1t_A 327 DEAN-DNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKS 405 (472)
T ss_dssp HHHC-TTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCC
T ss_pred hhcC-CchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCccc
Confidence 5432 2234456667777777888888888888777665332221 1222222 2345677788887777777665543
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.48 E-value=3e-12 Score=123.77 Aligned_cols=284 Identities=12% Similarity=-0.004 Sum_probs=214.9
Q ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHhhcCCCCChhhHHHHHHHHHHHHHHcCCCC-CH----HHHHHHHHHHHhcCCHh
Q 036198 177 INALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQTLEEMIQMGHAP-DN----FTYNTAIDTFCKARMVT 251 (499)
Q Consensus 177 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~~~~~la~~~~~~m~~~g~~p-~~----~~~~~li~~~~~~g~~~ 251 (499)
...+..+...+...|++++|...|++..+. .| +. ..+..+...|...|+++
T Consensus 48 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~------------------------~~~~~~~~~~~~~~lg~~~~~~g~~~ 103 (411)
T 4a1s_A 48 CLELALEGERLCNAGDCRAGVAFFQAAIQA------------------------GTEDLRTLSAIYSQLGNAYFYLGDYN 103 (411)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------------------------CCSCHHHHHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHHh------------------------cccChhHHHHHHHHHHHHHHHCCCHH
Confidence 345566777889999999999999987652 12 22 46888899999999999
Q ss_pred HHHHHHHHHHHcCCC--CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc----C-CCcCHHhHHHHHHHHHhcCC--
Q 036198 252 EAADLFEFMRTKGST--ISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINS----G-CLPDVSTYKEVLEGMCLAGK-- 322 (499)
Q Consensus 252 ~a~~~~~~m~~~~~~--~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~----~-~~~~~~~~~~ll~~~~~~g~-- 322 (499)
+|++.|++..+.... ..+....++..+...|...|++++|...+++..+. + ......++..+...|...|+
T Consensus 104 ~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 183 (411)
T 4a1s_A 104 KAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHL 183 (411)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCccc
Confidence 999999988764100 01234567888999999999999999999987754 1 12234577888889999999
Q ss_pred ---------------HHHHHHHHHHHHhC----CC-CCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC-cC----h
Q 036198 323 ---------------VEEAYKFLEEMGNK----GY-PPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCW-PS----V 377 (499)
Q Consensus 323 ---------------~~~a~~~~~~m~~~----~~-~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~-~~----~ 377 (499)
+++|.+.+++..+. +. .....++..+...+...|++++|...+++..+.... ++ .
T Consensus 184 ~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 263 (411)
T 4a1s_A 184 GQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAER 263 (411)
T ss_dssp HHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred ccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHH
Confidence 99999998876442 11 112357888889999999999999999988753211 11 2
Q ss_pred hhHHHHHHHHHhcCCchHHHHHHHHHhHCC----CC-CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC----C-CCCH
Q 036198 378 QTYNMLISMYFELGEPDGAFETWHEMDKRG----CA-QDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKG----L-KLPY 447 (499)
Q Consensus 378 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~----~~-p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~----~-~p~~ 447 (499)
.++..+...|...|++++|.+.+++..+.. .. ....++..+...|...|++++|...+++..+.. . ....
T Consensus 264 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 343 (411)
T 4a1s_A 264 RANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEA 343 (411)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHH
Confidence 378889999999999999999999876531 10 124677888899999999999999999887541 1 1124
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhcChhHHHH
Q 036198 448 RKFDSYLMQLSVIGDLGAIHKLSDHMRKFYNPVIARR 484 (499)
Q Consensus 448 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~ 484 (499)
.++..+..+|...|++++|.+++++..+.....-.+.
T Consensus 344 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 380 (411)
T 4a1s_A 344 RACWSLGNAHSAIGGHERALKYAEQHLQLAXXXXXXX 380 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccch
Confidence 5778888999999999999999999998877654433
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.47 E-value=6.5e-12 Score=120.96 Aligned_cols=308 Identities=11% Similarity=-0.040 Sum_probs=224.4
Q ss_pred CCHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHHhhhcCCCCC--HHHHHHHHHHHHhC
Q 036198 113 HEPLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLMILKQYTEKIKVKTQPE--INALNLLLDALCKC 190 (499)
Q Consensus 113 ~~~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~--~~~~~~li~~~~~~ 190 (499)
.....+......+. ..|++++|...|++...... .+ +. ..+|..+...+...
T Consensus 7 ~~~~~l~~~g~~~~----~~g~~~~A~~~~~~al~~~~--~~--------------------~~~~~~~~~~l~~~~~~~ 60 (406)
T 3sf4_A 7 ASCLELALEGERLC----KSGDCRAGVSFFEAAVQVGT--ED--------------------LKTLSAIYSQLGNAYFYL 60 (406)
T ss_dssp CCHHHHHHHHHHHH----HTTCHHHHHHHHHHHHHHCC--SC--------------------HHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHH----HhccHHHHHHHHHHHHhcCc--cc--------------------HHHHHHHHHHHHHHHHHh
Confidence 45566667777777 89999999999999988752 01 11 35788899999999
Q ss_pred CChHHHHHHHHHhhcCCCCChhhHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCC--
Q 036198 191 GLVDYAETICKRVKNKVKPNANTYNILGMQTLEEMIQMGHAP-DNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTI-- 267 (499)
Q Consensus 191 g~~~~A~~~~~~m~~~~~p~~~~~~~la~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~-- 267 (499)
|++++|...|++... .....+..| ...++..+...+...|++++|...+++..+.....
T Consensus 61 g~~~~A~~~~~~al~------------------~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 122 (406)
T 3sf4_A 61 HDYAKALEYHHHDLT------------------LARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELND 122 (406)
T ss_dssp TCHHHHHHHHHHHHH------------------HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC
T ss_pred cCHHHHHHHHHHHHH------------------HHHhccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhccc
Confidence 999999999988643 111222222 35578888999999999999999999887642100
Q ss_pred CCCCHHHHHHHHHHHHHcCC--------------------HHHHHHHHHHHHHc----CCC-cCHHhHHHHHHHHHhcCC
Q 036198 268 SSPTAKTYAIMIVALVQNDR--------------------MEECFSLLGHMINS----GCL-PDVSTYKEVLEGMCLAGK 322 (499)
Q Consensus 268 ~~p~~~~~~~ll~~~~~~~~--------------------~~~a~~~~~~m~~~----~~~-~~~~~~~~ll~~~~~~g~ 322 (499)
......++..+...|...|+ +++|...+.+..+. +.. ....++..+...|...|+
T Consensus 123 ~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~ 202 (406)
T 3sf4_A 123 KVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGN 202 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTB
T ss_pred ccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccC
Confidence 01114578888899999999 99999999887643 111 123567888889999999
Q ss_pred HHHHHHHHHHHHhCCC-CCC----HhhHHHHHHHHHHcCCHHHHHHHHHHHHHCC----CCcC-hhhHHHHHHHHHhcCC
Q 036198 323 VEEAYKFLEEMGNKGY-PPD----IVTYNCFLKVLCDNKNGDEALRLYGRMIEVG----CWPS-VQTYNMLISMYFELGE 392 (499)
Q Consensus 323 ~~~a~~~~~~m~~~~~-~p~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~----~~~~-~~~~~~li~~~~~~~~ 392 (499)
+++|.+.+++..+... .++ ..++..+...+...|++++|...+++..+.. ..+. ..++..+...|...|+
T Consensus 203 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~ 282 (406)
T 3sf4_A 203 FRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQD 282 (406)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCc
Confidence 9999999988764311 111 2378888899999999999999999877531 1111 5578889999999999
Q ss_pred chHHHHHHHHHhHC----CCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHC----CCC-CCHHHHHHHHHHHHhcCC
Q 036198 393 PDGAFETWHEMDKR----GCAQ-DVDTYCVMIDGLFDCSKVEEACFLLEEVVNK----GLK-LPYRKFDSYLMQLSVIGD 462 (499)
Q Consensus 393 ~~~a~~~~~~m~~~----~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~-p~~~~~~~ll~~~~~~g~ 462 (499)
+++|.+.+++..+. +-.+ ...++..+...|...|++++|...+++..+. +.. ....++..+...+...|+
T Consensus 283 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 362 (406)
T 3sf4_A 283 YEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGL 362 (406)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhH
Confidence 99999999987653 1111 1457778888999999999999999987643 211 124466677778877777
Q ss_pred HH
Q 036198 463 LG 464 (499)
Q Consensus 463 ~~ 464 (499)
..
T Consensus 363 ~~ 364 (406)
T 3sf4_A 363 SY 364 (406)
T ss_dssp TS
T ss_pred hH
Confidence 63
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.47 E-value=2.1e-11 Score=115.79 Aligned_cols=249 Identities=9% Similarity=0.057 Sum_probs=202.5
Q ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHhhcCCCCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC-HhHHHH
Q 036198 177 INALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQTLEEMIQMGHAPDNFTYNTAIDTFCKARM-VTEAAD 255 (499)
Q Consensus 177 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~~~~~la~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~-~~~a~~ 255 (499)
..+|+.+...+.+.|++++|++.|++.... .+-+...|+.+..++...|+ +++|+.
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l-----------------------~P~~~~a~~~~g~~l~~~g~d~~eAl~ 153 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIEL-----------------------NAANYTVWHFRRVLLKSLQKDLHEEMN 153 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHH-----------------------CTTCHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHh-----------------------CccCHHHHHHHHHHHHHcccCHHHHHH
Confidence 457888999999999999999999987651 12267788999999999997 999999
Q ss_pred HHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 036198 256 LFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGN 335 (499)
Q Consensus 256 ~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~ 335 (499)
.|++..+.. +-+..+|+.+..++...|++++|+..|+++.+.. +-+...|..+..++.+.|++++|+..++++++
T Consensus 154 ~~~~al~l~----P~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~ 228 (382)
T 2h6f_A 154 YITAIIEEQ----PKNYQVWHHRRVLVEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLK 228 (382)
T ss_dssp HHHHHHHHC----TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHH
T ss_pred HHHHHHHHC----CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 999999986 4578999999999999999999999999999875 45788899999999999999999999999998
Q ss_pred CCCCCCHhhHHHHHHHHHH-cCCHHHH-----HHHHHHHHHCCCCcChhhHHHHHHHHHhcC--CchHHHHHHHHHhHCC
Q 036198 336 KGYPPDIVTYNCFLKVLCD-NKNGDEA-----LRLYGRMIEVGCWPSVQTYNMLISMYFELG--EPDGAFETWHEMDKRG 407 (499)
Q Consensus 336 ~~~~p~~~~~~~li~~~~~-~g~~~~a-----~~~~~~m~~~~~~~~~~~~~~li~~~~~~~--~~~~a~~~~~~m~~~~ 407 (499)
.+.. +...|+.+..++.+ .|..++| +..|++..+... -+...|+.+...+...| ++++|.+.+.++ +.
T Consensus 229 l~P~-~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~P-~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~- 304 (382)
T 2h6f_A 229 EDVR-NNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVP-HNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QP- 304 (382)
T ss_dssp HCTT-CHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHST-TCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TT-
T ss_pred hCCC-CHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHccCccchHHHHHHHHHh-cc-
Confidence 7654 78899999999999 6665777 588888887542 34678888888888888 689999999988 33
Q ss_pred CCCCHHHHHHHHHHHHhCC---------CHHHHHHHHHHH-HHCCCCCCHHHHHHHHHHHH
Q 036198 408 CAQDVDTYCVMIDGLFDCS---------KVEEACFLLEEV-VNKGLKLPYRKFDSYLMQLS 458 (499)
Q Consensus 408 ~~p~~~~~~~li~~~~~~g---------~~~~a~~~~~~m-~~~~~~p~~~~~~~ll~~~~ 458 (499)
...+...+..+...|.+.| ..++|.++++++ .+.. +.....|..+...+.
T Consensus 305 ~p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~~D-P~r~~~w~~~~~~l~ 364 (382)
T 2h6f_A 305 SHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKEKD-TIRKEYWRYIGRSLQ 364 (382)
T ss_dssp TCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHTTC-GGGHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHhC-chhHHHHHHHHHHHH
Confidence 3446778888999998864 358999999998 5543 223445555555443
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.45 E-value=1.5e-10 Score=107.19 Aligned_cols=223 Identities=15% Similarity=0.070 Sum_probs=179.2
Q ss_pred hHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHH-------cCCH-------HHHHHHHHHHHHcCCCcCHHhHHHHHHH
Q 036198 251 TEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQ-------NDRM-------EECFSLLGHMINSGCLPDVSTYKEVLEG 316 (499)
Q Consensus 251 ~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~-------~~~~-------~~a~~~~~~m~~~~~~~~~~~~~~ll~~ 316 (499)
++|..+|++..... +-+...|..+...+.. .|++ ++|..+|++..+.-.+-+...|..+...
T Consensus 33 ~~a~~~~~~al~~~----p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~ 108 (308)
T 2ond_A 33 KRVMFAYEQCLLVL----GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADY 108 (308)
T ss_dssp HHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc----CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHH
Confidence 68889999998874 4578888888887763 5775 8999999999873123456688999999
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCC-Hh-hHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcChhhHHHHHHHHH-hcCCc
Q 036198 317 MCLAGKVEEAYKFLEEMGNKGYPPD-IV-TYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYF-ELGEP 393 (499)
Q Consensus 317 ~~~~g~~~~a~~~~~~m~~~~~~p~-~~-~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~-~~~~~ 393 (499)
+.+.|++++|.++|++..+. .|+ .. .|..+...+.+.|++++|..+|++..+... ++...|........ ..|+.
T Consensus 109 ~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p-~~~~~~~~~a~~~~~~~~~~ 185 (308)
T 2ond_A 109 EESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDAR-TRHHVYVTAALMEYYCSKDK 185 (308)
T ss_dssp HHHTTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTT-CCTHHHHHHHHHHHHTSCCH
T ss_pred HHhcCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHcCCH
Confidence 99999999999999999885 343 33 799999999999999999999999988642 34445544333322 36999
Q ss_pred hHHHHHHHHHhHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC-CCC--CHHHHHHHHHHHHhcCCHHHHHHHH
Q 036198 394 DGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKG-LKL--PYRKFDSYLMQLSVIGDLGAIHKLS 470 (499)
Q Consensus 394 ~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~-~~p--~~~~~~~ll~~~~~~g~~~~a~~~~ 470 (499)
++|..+|+...+.. +-+...|..++..+.+.|++++|..+|++..... +.| ....|..++..+.+.|+.+.|..++
T Consensus 186 ~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~ 264 (308)
T 2ond_A 186 SVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVE 264 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 99999999987652 2367888899999999999999999999999873 454 4668888899999999999999999
Q ss_pred HHHHhhcChhH
Q 036198 471 DHMRKFYNPVI 481 (499)
Q Consensus 471 ~~m~~~~~~~~ 481 (499)
+++.+.+|...
T Consensus 265 ~~a~~~~p~~~ 275 (308)
T 2ond_A 265 KRRFTAFREEY 275 (308)
T ss_dssp HHHHHHTTTTT
T ss_pred HHHHHHccccc
Confidence 99999888643
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.45 E-value=5.7e-12 Score=121.36 Aligned_cols=284 Identities=14% Similarity=0.046 Sum_probs=212.9
Q ss_pred CCCHHHHHHHHHHHHhCCChHHHHHHHHHhhcCCCCChhhHHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCCHh
Q 036198 174 QPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQTLEEMIQMGHAPD--NFTYNTAIDTFCKARMVT 251 (499)
Q Consensus 174 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~~~~~la~~~~~~m~~~g~~p~--~~~~~~li~~~~~~g~~~ 251 (499)
......+......+...|++++|...|++..+..+. .|. ...+..+...+...|+++
T Consensus 6 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~---------------------~~~~~~~~~~~l~~~~~~~g~~~ 64 (406)
T 3sf4_A 6 EASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTE---------------------DLKTLSAIYSQLGNAYFYLHDYA 64 (406)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS---------------------CHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcc---------------------cHHHHHHHHHHHHHHHHHhcCHH
Confidence 456667888889999999999999999987652100 111 357888899999999999
Q ss_pred HHHHHHHHHHHcCCCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CcC----HHhHHHHHHHHHhcCC--
Q 036198 252 EAADLFEFMRTKGSTI--SSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGC-LPD----VSTYKEVLEGMCLAGK-- 322 (499)
Q Consensus 252 ~a~~~~~~m~~~~~~~--~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~-~~~----~~~~~~ll~~~~~~g~-- 322 (499)
+|...|++........ .+....++..+...+...|++++|...+++..+... .++ ..++..+...|...|+
T Consensus 65 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 144 (406)
T 3sf4_A 65 KALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSF 144 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcc
Confidence 9999999875531000 112256788888999999999999999998875410 011 4477888889999999
Q ss_pred ------------------HHHHHHHHHHHHhC----CCCC-CHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-CcC--
Q 036198 323 ------------------VEEAYKFLEEMGNK----GYPP-DIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGC-WPS-- 376 (499)
Q Consensus 323 ------------------~~~a~~~~~~m~~~----~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~-~~~-- 376 (499)
+++|.+.+++.... +..| ...++..+...+...|++++|...+++..+... .++
T Consensus 145 ~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 224 (406)
T 3sf4_A 145 GCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKA 224 (406)
T ss_dssp C-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHH
T ss_pred cccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcH
Confidence 99999998876432 2111 235688888999999999999999998875311 111
Q ss_pred --hhhHHHHHHHHHhcCCchHHHHHHHHHhHC----CCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCC-CC--
Q 036198 377 --VQTYNMLISMYFELGEPDGAFETWHEMDKR----GCAQ-DVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLK-LP-- 446 (499)
Q Consensus 377 --~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~-p~-- 446 (499)
..++..+...|...|++++|...+++..+. +..+ ...++..+...|...|++++|...+++..+.... .+
T Consensus 225 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~ 304 (406)
T 3sf4_A 225 AERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRI 304 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcH
Confidence 347888999999999999999999987643 1111 1457788889999999999999999988754211 12
Q ss_pred --HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcC
Q 036198 447 --YRKFDSYLMQLSVIGDLGAIHKLSDHMRKFYN 478 (499)
Q Consensus 447 --~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~ 478 (499)
..++..+...|...|++++|.+.+++..+...
T Consensus 305 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 338 (406)
T 3sf4_A 305 GEGRACWSLGNAYTALGNHDQAMHFAEKHLEISR 338 (406)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 55778888999999999999999999877643
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.44 E-value=5.1e-12 Score=118.06 Aligned_cols=281 Identities=14% Similarity=0.027 Sum_probs=207.0
Q ss_pred HHHHHHHHHHHhCCChHHHHHHHHHhhcCCCCChhhHHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCCHhHHHH
Q 036198 178 NALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQTLEEMIQMGHAPD--NFTYNTAIDTFCKARMVTEAAD 255 (499)
Q Consensus 178 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~~~~~la~~~~~~m~~~g~~p~--~~~~~~li~~~~~~g~~~~a~~ 255 (499)
..+......+...|++++|...|++..+.. |+ .|. ...+..+...+...|++++|.+
T Consensus 6 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~--------------------~~~~~~~~~~~l~~~~~~~g~~~~A~~ 64 (338)
T 3ro2_A 6 LELALEGERLCKSGDCRAGVSFFEAAVQVG-TE--------------------DLKTLSAIYSQLGNAYFYLHDYAKALE 64 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CS--------------------CHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhC-cc--------------------cHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 355666778899999999999999876520 00 011 4578888999999999999999
Q ss_pred HHHHHHHcCCCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CcC----HHhHHHHHHHHHhcCC------
Q 036198 256 LFEFMRTKGSTI--SSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGC-LPD----VSTYKEVLEGMCLAGK------ 322 (499)
Q Consensus 256 ~~~~m~~~~~~~--~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~-~~~----~~~~~~ll~~~~~~g~------ 322 (499)
.+++..+..... .+....++..+...+...|++++|...+.+..+... .++ ..++..+...+...|+
T Consensus 65 ~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 144 (338)
T 3ro2_A 65 YHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPG 144 (338)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSS
T ss_pred HHHHHHHHhhcccccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccch
Confidence 999876531000 112356788889999999999999999998765311 112 3477788889999999
Q ss_pred --------------HHHHHHHHHHHHhC----CC-CCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCC----C-CcChh
Q 036198 323 --------------VEEAYKFLEEMGNK----GY-PPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVG----C-WPSVQ 378 (499)
Q Consensus 323 --------------~~~a~~~~~~m~~~----~~-~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~----~-~~~~~ 378 (499)
+++|.+.+++.... +. .....++..+...+...|++++|...+++..+.. . .....
T Consensus 145 ~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 224 (338)
T 3ro2_A 145 PQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERR 224 (338)
T ss_dssp CC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred hhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHH
Confidence 99999998876432 11 1123467888889999999999999999877531 1 11134
Q ss_pred hHHHHHHHHHhcCCchHHHHHHHHHhHC----CCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC----C-CCCHH
Q 036198 379 TYNMLISMYFELGEPDGAFETWHEMDKR----GCAQ-DVDTYCVMIDGLFDCSKVEEACFLLEEVVNKG----L-KLPYR 448 (499)
Q Consensus 379 ~~~~li~~~~~~~~~~~a~~~~~~m~~~----~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~----~-~p~~~ 448 (499)
++..+...+...|++++|.+.+++..+. +..+ ...++..+...+...|++++|...+++..+.. - .....
T Consensus 225 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 304 (338)
T 3ro2_A 225 AYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGR 304 (338)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHH
Confidence 7888899999999999999999987643 1111 14577788889999999999999999886531 1 11244
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhcCh
Q 036198 449 KFDSYLMQLSVIGDLGAIHKLSDHMRKFYNP 479 (499)
Q Consensus 449 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~ 479 (499)
++..+...|.+.|++++|.+.+++..+..+.
T Consensus 305 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 335 (338)
T 3ro2_A 305 ACWSLGNAYTALGNHDQAMHFAEKHLEISRE 335 (338)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHHHh
Confidence 7778889999999999999999999886543
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.43 E-value=1.6e-11 Score=114.70 Aligned_cols=280 Identities=10% Similarity=-0.024 Sum_probs=206.4
Q ss_pred HHHHHHHHhcchhhhhhHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhCCChHHHH
Q 036198 118 YNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLMILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAE 197 (499)
Q Consensus 118 ~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 197 (499)
+......+. ..|++++|...|++..+.... +.. .-...+..+...+...|++++|.
T Consensus 8 l~~~g~~~~----~~g~~~~A~~~~~~al~~~~~--~~~------------------~~~~~~~~l~~~~~~~g~~~~A~ 63 (338)
T 3ro2_A 8 LALEGERLC----KSGDCRAGVSFFEAAVQVGTE--DLK------------------TLSAIYSQLGNAYFYLHDYAKAL 63 (338)
T ss_dssp HHHHHHHHH----HTTCHHHHHHHHHHHHHHCCS--CHH------------------HHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHH----HhccHHHHHHHHHHHHhhCcc--cHH------------------HHHHHHHHHHHHHHHcCCHHHHH
Confidence 344455556 899999999999999887520 000 00357888999999999999999
Q ss_pred HHHHHhhcCCCCChhhHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCCCC----H
Q 036198 198 TICKRVKNKVKPNANTYNILGMQTLEEMIQMGHAP-DNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPT----A 272 (499)
Q Consensus 198 ~~~~~m~~~~~p~~~~~~~la~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~p~----~ 272 (499)
+.+++... .....+..| ...++..+...+...|++++|...+++..+.... .++ .
T Consensus 64 ~~~~~al~------------------~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~--~~~~~~~~ 123 (338)
T 3ro2_A 64 EYHHHDLT------------------LARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRE--LNDKVGEA 123 (338)
T ss_dssp HHHHHHHH------------------HHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH--TTCHHHHH
T ss_pred HHHHHHHH------------------HhhcccccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH--hcCchHHH
Confidence 99988643 111112222 3567888899999999999999999987664210 112 4
Q ss_pred HHHHHHHHHHHHcCC--------------------HHHHHHHHHHHHHc----CC-CcCHHhHHHHHHHHHhcCCHHHHH
Q 036198 273 KTYAIMIVALVQNDR--------------------MEECFSLLGHMINS----GC-LPDVSTYKEVLEGMCLAGKVEEAY 327 (499)
Q Consensus 273 ~~~~~ll~~~~~~~~--------------------~~~a~~~~~~m~~~----~~-~~~~~~~~~ll~~~~~~g~~~~a~ 327 (499)
.++..+...+...|+ +++|...+++..+. +. ......+..+...+...|++++|.
T Consensus 124 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 203 (338)
T 3ro2_A 124 RALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAV 203 (338)
T ss_dssp HHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHH
Confidence 478888889999999 99999999887542 21 112346778888999999999999
Q ss_pred HHHHHHHhCC----C-CCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCC----CCc-ChhhHHHHHHHHHhcCCchHHH
Q 036198 328 KFLEEMGNKG----Y-PPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVG----CWP-SVQTYNMLISMYFELGEPDGAF 397 (499)
Q Consensus 328 ~~~~~m~~~~----~-~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~----~~~-~~~~~~~li~~~~~~~~~~~a~ 397 (499)
+.+++..+.. . .....++..+...+...|++++|...+++..+.. ..+ ...++..+...|...|++++|.
T Consensus 204 ~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 283 (338)
T 3ro2_A 204 IAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAI 283 (338)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHH
Confidence 9998876431 1 1113378888899999999999999999876531 111 1557788899999999999999
Q ss_pred HHHHHHhHC----CC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHC
Q 036198 398 ETWHEMDKR----GC-AQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNK 441 (499)
Q Consensus 398 ~~~~~m~~~----~~-~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 441 (499)
..+++..+. +- .....++..+...|...|++++|...+++..+.
T Consensus 284 ~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 332 (338)
T 3ro2_A 284 DYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 332 (338)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 999987653 11 112446778889999999999999999998865
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.41 E-value=1.1e-09 Score=115.35 Aligned_cols=381 Identities=11% Similarity=0.059 Sum_probs=199.1
Q ss_pred ccccccCcchhhHHHHHHHh-ccCccchhhccCCccccccccccCCCcchHHHHHHHHHhcc--CCCchHHHHHhhCCCC
Q 036198 2 TLAHLVSPTEAQYAVLVRVI-RTKSLQSYIGKVPSLVCKVFDESSDSVSDVAKLYEAIIDNS--NAYDNMEKALDSLGVP 78 (499)
Q Consensus 2 ~~~~~~~p~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~al~~~~~~ 78 (499)
.|.|...|+.++ .+++++ ..+....++..+...... .+. .+....+.+.|+..- ...++..+.+..++ .
T Consensus 978 aL~e~~~PeeVs--~~vKaf~~aglp~EaieLLEKivl~----~s~-fs~n~~LqnlLi~tAIkaD~~Rv~eyI~kLd-~ 1049 (1630)
T 1xi4_A 978 ALSETQDPEEVS--VTVKAFMTADLPNELIELLEKIVLD----NSV-FSEHRNLQNLLILTAIKADRTRVMEYINRLD-N 1049 (1630)
T ss_pred hcccccCHHHhH--HHHHHHHhCCCHHHHHHHHHHHHcC----CCc-ccccHHHHHHHHHHHHHhChhhHHHHHHHhh-h
Confidence 466778888775 345555 344444444444332211 110 011223333344333 24455666666666 3
Q ss_pred CCHHHHHHHHHccCCChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHHHcCCCcccHHHH
Q 036198 79 LTTDSVVGVLQRFQFEEKIAFRFFMWAGHQDNYAHEPLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVL 158 (499)
Q Consensus 79 ~~~~~~~~~l~~~~~~~~~a~~~f~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~ 158 (499)
.+.+.+..++...+ ..+.|..+|+... -.....+.++. ..+++++|.++.++... ..++
T Consensus 1050 ~d~~eIA~Iai~lg-lyEEAf~IYkKa~------~~~~A~~VLie-------~i~nldrAiE~Aervn~-------p~vW 1108 (1630)
T 1xi4_A 1050 YDAPDIANIAISNE-LFEEAFAIFRKFD------VNTSAVQVLIE-------HIGNLDRAYEFAERCNE-------PAVW 1108 (1630)
T ss_pred ccHHHHHHHHHhCC-CHHHHHHHHHHcC------CHHHHHHHHHH-------HHhhHHHHHHHHHhcCC-------HHHH
Confidence 33444555554433 3445777776541 12222333433 45677777777765421 1111
Q ss_pred HHHHHHHHHh-------hhcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHhhcCCCCChhhHHHHHHHHHHHHHHcCCC
Q 036198 159 LMILKQYTEK-------IKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQTLEEMIQMGHA 231 (499)
Q Consensus 159 ~~~l~~~~~~-------~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~~~~~la~~~~~~m~~~g~~ 231 (499)
..+-+++... ....-..|...|..++..|.+.|++++|.+.|....+ ..
T Consensus 1109 sqLAKAql~~G~~kEAIdsYiKAdD~say~eVa~~~~~lGkyEEAIeyL~mArk----------------------~~-- 1164 (1630)
T 1xi4_A 1109 SQLAKAQLQKGMVKEAIDSYIKADDPSSYMEVVQAANTSGNWEELVKYLQMARK----------------------KA-- 1164 (1630)
T ss_pred HHHHHHHHhCCCHHHHHHHHHhcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHh----------------------hc--
Confidence 1111111111 0000012333444444444444444444444443322 11
Q ss_pred CCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHhHH
Q 036198 232 PDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYK 311 (499)
Q Consensus 232 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~ 311 (499)
+++...+.++.+|++.+++++...+. + .++...|..+...|...|++++|..+|... ..|.
T Consensus 1165 ~e~~Idt~LafaYAKl~rleele~fI----~------~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~ 1225 (1630)
T 1xi4_A 1165 RESYVETELIFALAKTNRLAELEEFI----N------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFG 1225 (1630)
T ss_pred ccccccHHHHHHHHhhcCHHHHHHHH----h------CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHH
Confidence 22222223666666666655432221 1 234455555666666666666666666663 3566
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcChhhHHHHHHHHHhcC
Q 036198 312 EVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELG 391 (499)
Q Consensus 312 ~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~ 391 (499)
.+...|++.|++++|.+.+++. .+..+|..+..+|...|++..|...... +..+...+..++..|.+.|
T Consensus 1226 rLA~tLvkLge~q~AIEaarKA------~n~~aWkev~~acve~~Ef~LA~~cgl~-----Iiv~~deLeeli~yYe~~G 1294 (1630)
T 1xi4_A 1226 RLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLH-----IVVHADELEELINYYQDRG 1294 (1630)
T ss_pred HHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHHHHHHhhhhHHHHHHHHHHh-----hhcCHHHHHHHHHHHHHcC
Confidence 6666666667777666666655 2456666666666666666666655443 2235566678888888889
Q ss_pred CchHHHHHHHHHhHCCCCCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHHCCCCC------CHHHHHHHHHHHHhcCCH
Q 036198 392 EPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDC--SKVEEACFLLEEVVNKGLKL------PYRKFDSYLMQLSVIGDL 463 (499)
Q Consensus 392 ~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~--g~~~~a~~~~~~m~~~~~~p------~~~~~~~ll~~~~~~g~~ 463 (499)
.+++|..+++...... +-....|+-+...|++. ++..++.++|..- -+++| +...|..+.-.|.+.|++
T Consensus 1295 ~feEAI~LlE~aL~Le-raH~gmftELaiLyaKy~peklmEhlk~f~~r--ini~k~~r~~e~~~lW~elv~LY~~~~e~ 1371 (1630)
T 1xi4_A 1295 YFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWSR--VNIPKVLRAAEQAHLWAELVFLYDKYEEY 1371 (1630)
T ss_pred CHHHHHHHHHHHhccC-hhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHh--cccchHhHHHHHHHHHHHHHHHHHhcccH
Confidence 9999998887766543 23445666666666653 3444444444421 12222 355788888888889999
Q ss_pred HHHHH
Q 036198 464 GAIHK 468 (499)
Q Consensus 464 ~~a~~ 468 (499)
+.|..
T Consensus 1372 dnA~~ 1376 (1630)
T 1xi4_A 1372 DNAII 1376 (1630)
T ss_pred HHHHH
Confidence 88874
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.40 E-value=2.1e-11 Score=117.81 Aligned_cols=279 Identities=13% Similarity=0.003 Sum_probs=208.7
Q ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHHhhhcCCCCCH----HHHHHHHHHHHhCCC
Q 036198 117 AYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLMILKQYTEKIKVKTQPEI----NALNLLLDALCKCGL 192 (499)
Q Consensus 117 ~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~----~~~~~li~~~~~~g~ 192 (499)
.+..+...+. ..|++++|...|++..+... .+. .+|..+...|...|+
T Consensus 50 ~l~~~g~~~~----~~g~~~~A~~~~~~al~~~~------------------------~~~~~~~~~~~~lg~~~~~~g~ 101 (411)
T 4a1s_A 50 ELALEGERLC----NAGDCRAGVAFFQAAIQAGT------------------------EDLRTLSAIYSQLGNAYFYLGD 101 (411)
T ss_dssp HHHHHHHHHH----HTTCHHHHHHHHHHHHHHCC------------------------SCHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHH----HhCcHHHHHHHHHHHHHhcc------------------------cChhHHHHHHHHHHHHHHHCCC
Confidence 3444555666 89999999999999988752 122 478889999999999
Q ss_pred hHHHHHHHHHhhcCCCCChhhHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCC--CC
Q 036198 193 VDYAETICKRVKNKVKPNANTYNILGMQTLEEMIQMGHAP-DNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTI--SS 269 (499)
Q Consensus 193 ~~~A~~~~~~m~~~~~p~~~~~~~la~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~--~~ 269 (499)
+++|.+.|++..+ .....+..| ....+..+...|...|++++|.+.|++..+..... .+
T Consensus 102 ~~~A~~~~~~al~------------------~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 163 (411)
T 4a1s_A 102 YNKAMQYHKHDLT------------------LAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRL 163 (411)
T ss_dssp HHHHHHHHHHHHH------------------HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHHHHH------------------HHHHccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchH
Confidence 9999999988643 111112222 45678889999999999999999999877641000 11
Q ss_pred CCHHHHHHHHHHHHHcCC-----------------HHHHHHHHHHHHHc----CC-CcCHHhHHHHHHHHHhcCCHHHHH
Q 036198 270 PTAKTYAIMIVALVQNDR-----------------MEECFSLLGHMINS----GC-LPDVSTYKEVLEGMCLAGKVEEAY 327 (499)
Q Consensus 270 p~~~~~~~ll~~~~~~~~-----------------~~~a~~~~~~m~~~----~~-~~~~~~~~~ll~~~~~~g~~~~a~ 327 (499)
....++..+...|...|+ +++|...+++..+. +. .....++..+...|...|++++|.
T Consensus 164 ~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 243 (411)
T 4a1s_A 164 SEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAI 243 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHH
Confidence 235578888899999999 99999999887643 21 122357788889999999999999
Q ss_pred HHHHHHHhCCCC-CC----HhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCC----C-cChhhHHHHHHHHHhcCCchHHH
Q 036198 328 KFLEEMGNKGYP-PD----IVTYNCFLKVLCDNKNGDEALRLYGRMIEVGC----W-PSVQTYNMLISMYFELGEPDGAF 397 (499)
Q Consensus 328 ~~~~~m~~~~~~-p~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~----~-~~~~~~~~li~~~~~~~~~~~a~ 397 (499)
+.+++..+.... ++ ..++..+...|...|++++|...+++..+... . ....++..+...|...|++++|.
T Consensus 244 ~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 323 (411)
T 4a1s_A 244 EHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAI 323 (411)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 999987653111 11 23788889999999999999999998775321 0 12567888999999999999999
Q ss_pred HHHHHHhHC----CC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHC
Q 036198 398 ETWHEMDKR----GC-AQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNK 441 (499)
Q Consensus 398 ~~~~~m~~~----~~-~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 441 (499)
+.+++..+. +. .....++..+...|...|++++|...+++..+.
T Consensus 324 ~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 372 (411)
T 4a1s_A 324 EYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQL 372 (411)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 999987653 11 112347778889999999999999999998765
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.38 E-value=7.2e-11 Score=112.99 Aligned_cols=288 Identities=11% Similarity=-0.025 Sum_probs=202.7
Q ss_pred HHhCCChHHHHHHHHHhhcC---CCCCh--hhHHHH--------------HH-----------HHHHHHHHcCCCCCHHH
Q 036198 187 LCKCGLVDYAETICKRVKNK---VKPNA--NTYNIL--------------GM-----------QTLEEMIQMGHAPDNFT 236 (499)
Q Consensus 187 ~~~~g~~~~A~~~~~~m~~~---~~p~~--~~~~~l--------------a~-----------~~~~~m~~~g~~p~~~~ 236 (499)
+.+.+++++|..+++++.+. ...|. ..|-.+ +. +.++.+..... +...
T Consensus 22 ~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~~~~--~~~~ 99 (383)
T 3ulq_A 22 YIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEIDKKQA--RLTG 99 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHHHHHHTH--HHHH
T ss_pred HHHHcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHHHHhcCC--Cchh
Confidence 45689999999999998752 32333 322222 22 33444332111 1111
Q ss_pred ------HHHHHHHHHhcCCHhHHHHHHHHHHHcCCCC-CCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--C---
Q 036198 237 ------YNTAIDTFCKARMVTEAADLFEFMRTKGSTI-SSP-TAKTYAIMIVALVQNDRMEECFSLLGHMINSG--C--- 303 (499)
Q Consensus 237 ------~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~-~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~--~--- 303 (499)
+......+...|++++|+..|++..+..... ..+ ...++..+...|...|++++|...+.+..+.- .
T Consensus 100 ~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~ 179 (383)
T 3ulq_A 100 LLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAY 179 (383)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTT
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccc
Confidence 1225566788999999999999998752110 011 34678899999999999999999999887531 1
Q ss_pred -CcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCC-CCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHC----CC
Q 036198 304 -LPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNK----GYP-PDIVTYNCFLKVLCDNKNGDEALRLYGRMIEV----GC 373 (499)
Q Consensus 304 -~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~----~~~-p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~ 373 (499)
.....+++.+...|...|++++|.+.+++..+. +.. ....++..+...|...|++++|...+++..+. +.
T Consensus 180 ~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~ 259 (383)
T 3ulq_A 180 NIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNI 259 (383)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcc
Confidence 112356788889999999999999999887643 111 11247888999999999999999999998762 32
Q ss_pred -CcChhhHHHHHHHHHhcCCchHHHHHHHHHhHC----CCCCCHHHHHHHHHHHHhCCC---HHHHHHHHHHHHHCCCCC
Q 036198 374 -WPSVQTYNMLISMYFELGEPDGAFETWHEMDKR----GCAQDVDTYCVMIDGLFDCSK---VEEACFLLEEVVNKGLKL 445 (499)
Q Consensus 374 -~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----~~~p~~~~~~~li~~~~~~g~---~~~a~~~~~~m~~~~~~p 445 (499)
.....++..+...|...|++++|.+.+++..+. +-+.....+..+...+...|+ +++|..++++. +..|
T Consensus 260 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~---~~~~ 336 (383)
T 3ulq_A 260 LPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK---MLYA 336 (383)
T ss_dssp GGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT---TCHH
T ss_pred chhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC---cCHH
Confidence 334668899999999999999999999987653 111122335667778888898 77777777665 3333
Q ss_pred C-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCh
Q 036198 446 P-YRKFDSYLMQLSVIGDLGAIHKLSDHMRKFYNP 479 (499)
Q Consensus 446 ~-~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~ 479 (499)
+ ...+..+...|...|++++|.+.+++..+....
T Consensus 337 ~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~ 371 (383)
T 3ulq_A 337 DLEDFAIDVAKYYHERKNFQKASAYFLKVEQVRQL 371 (383)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 3 446778889999999999999999998875443
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.38 E-value=3.6e-10 Score=104.60 Aligned_cols=219 Identities=10% Similarity=0.022 Sum_probs=159.9
Q ss_pred HHHHHHHHHHHHcCCCcccHHHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHH-------hCCCh-------HHHHHHHH
Q 036198 136 RLVCSMLDYMKRNNKVFVPVDVLLMILKQYTEKIKVKTQPEINALNLLLDALC-------KCGLV-------DYAETICK 201 (499)
Q Consensus 136 ~~a~~~~~~m~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~li~~~~-------~~g~~-------~~A~~~~~ 201 (499)
++|..+|++..... +.+...|..++..+. +.|++ ++|..+|+
T Consensus 33 ~~a~~~~~~al~~~------------------------p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~ 88 (308)
T 2ond_A 33 KRVMFAYEQCLLVL------------------------GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYE 88 (308)
T ss_dssp HHHHHHHHHHHHHH------------------------TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc------------------------CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHH
Confidence 56777777777654 346667777777765 45886 88888888
Q ss_pred HhhcCCCCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCCCCHH-HHHHHHH
Q 036198 202 RVKNKVKPNANTYNILGMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAK-TYAIMIV 280 (499)
Q Consensus 202 ~m~~~~~p~~~~~~~la~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~p~~~-~~~~ll~ 280 (499)
+....+.|+ +...|..++..+.+.|++++|.++|++..+.. +-+.. +|..+..
T Consensus 89 rAl~~~~p~----------------------~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~----p~~~~~~~~~~~~ 142 (308)
T 2ond_A 89 RAISTLLKK----------------------NMLLYFAYADYEESRMKYEKVHSIYNRLLAIE----DIDPTLVYIQYMK 142 (308)
T ss_dssp HHHTTTTTT----------------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSS----SSCTHHHHHHHHH
T ss_pred HHHHHhCcc----------------------cHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcc----ccCccHHHHHHHH
Confidence 876532221 55678889999999999999999999998854 22333 7888888
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHH-hcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHH
Q 036198 281 ALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMC-LAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGD 359 (499)
Q Consensus 281 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~-~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~ 359 (499)
.+.+.|++++|..+|++..+.+ +.+...|........ ..|++++|.++|+...+... -+...|..++..+.+.|+++
T Consensus 143 ~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~~~~~~~~~g~~~ 220 (308)
T 2ond_A 143 FARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYG-DIPEYVLAYIDYLSHLNEDN 220 (308)
T ss_dssp HHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHTTCCHH
T ss_pred HHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHCCCHH
Confidence 8899999999999999988764 234444443333322 36888888888888776532 26677888888888888888
Q ss_pred HHHHHHHHHHHCC-CCc--ChhhHHHHHHHHHhcCCchHHHHHHHHHhHC
Q 036198 360 EALRLYGRMIEVG-CWP--SVQTYNMLISMYFELGEPDGAFETWHEMDKR 406 (499)
Q Consensus 360 ~a~~~~~~m~~~~-~~~--~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 406 (499)
+|..+|++..+.. ..| ....|..++....+.|+.+.|..+++++.+.
T Consensus 221 ~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~ 270 (308)
T 2ond_A 221 NTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 270 (308)
T ss_dssp HHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 8888888888753 344 3557777788888888888888888887664
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.35 E-value=2.8e-10 Score=96.48 Aligned_cols=167 Identities=11% Similarity=0.042 Sum_probs=112.3
Q ss_pred CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHhHHH
Q 036198 233 DNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKE 312 (499)
Q Consensus 233 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ 312 (499)
++..|..+...|.+.|++++|++.|++..+.. +-+..++..+...|.+.|++++|...+....... +.+...+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~----p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~ 78 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD----PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYI 78 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHH
Confidence 45667777777777777777777777777764 3456677777777777777777777777776653 334555666
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcChhhHHHHHHHHHhcCC
Q 036198 313 VLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGE 392 (499)
Q Consensus 313 ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~ 392 (499)
+...+...++++.|.+.+......... +...+..+...+.+.|++++|.+.|++..+.. +.+..+|..+..+|.+.|+
T Consensus 79 ~~~~~~~~~~~~~a~~~~~~a~~~~~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~~~~~~g~ 156 (184)
T 3vtx_A 79 LGSANFMIDEKQAAIDALQRAIALNTV-YADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIRAYQSIGLAYEGKGL 156 (184)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhhHHHHHHHHHHHCCC
Confidence 666677777777777777766654322 45666666677777777777777777766643 1345566666677777777
Q ss_pred chHHHHHHHHHhHC
Q 036198 393 PDGAFETWHEMDKR 406 (499)
Q Consensus 393 ~~~a~~~~~~m~~~ 406 (499)
+++|.+.|++..+.
T Consensus 157 ~~~A~~~~~~al~~ 170 (184)
T 3vtx_A 157 RDEAVKYFKKALEK 170 (184)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhC
Confidence 77777777766653
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.35 E-value=2.5e-10 Score=96.76 Aligned_cols=170 Identities=13% Similarity=0.067 Sum_probs=105.2
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcChhhHHHHHH
Q 036198 306 DVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLIS 385 (499)
Q Consensus 306 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~ 385 (499)
+...|..+...|...|++++|.+.|++..+.... +..++..+...|.+.|++++|...+........ .+...+..+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~~ 81 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPN-NVETLLKLGKTYMDIGLPNDAIESLKKFVVLDT-TSAEAYYILGS 81 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCc-hhHHHHHHHHH
Confidence 4455666666666666666666666665554322 455566666666666666666666666655431 23445555556
Q ss_pred HHHhcCCchHHHHHHHHHhHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 036198 386 MYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGA 465 (499)
Q Consensus 386 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~ 465 (499)
.+...++++.|.+.+....+.. +-+...+..+...|.+.|++++|.+.+++..+... -+...+..+..+|.+.|++++
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKP-GFIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcc-hhhhHHHHHHHHHHHCCCHHH
Confidence 6666666666666666665542 22455666666677777777777777777666542 356667777777777777777
Q ss_pred HHHHHHHHHhhcCh
Q 036198 466 IHKLSDHMRKFYNP 479 (499)
Q Consensus 466 a~~~~~~m~~~~~~ 479 (499)
|.+.+++..+..|.
T Consensus 160 A~~~~~~al~~~p~ 173 (184)
T 3vtx_A 160 AVKYFKKALEKEEK 173 (184)
T ss_dssp HHHHHHHHHHTTHH
T ss_pred HHHHHHHHHhCCcc
Confidence 77777777666543
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.35 E-value=2.7e-11 Score=111.97 Aligned_cols=179 Identities=16% Similarity=0.104 Sum_probs=132.7
Q ss_pred CCHHHHHHHHHHHHhCCChHHHHHHHHHhhcCCCCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHH
Q 036198 175 PEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAA 254 (499)
Q Consensus 175 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~~~~~la~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~ 254 (499)
.+..++..+...+...|++++|..+|+++.+ +.........+.....+..+...|...|++++|.
T Consensus 25 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~---------------~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 89 (311)
T 3nf1_A 25 ARLRTLHNLVIQYASQGRYEVAVPLCKQALE---------------DLEKTSGHDHPDVATMLNILALVYRDQNKYKDAA 89 (311)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---------------HHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---------------HHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHH
Confidence 3467899999999999999999999998754 1222211122234667888999999999999999
Q ss_pred HHHHHHHHc------CCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc------CC-CcCHHhHHHHHHHHHhcC
Q 036198 255 DLFEFMRTK------GSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINS------GC-LPDVSTYKEVLEGMCLAG 321 (499)
Q Consensus 255 ~~~~~m~~~------~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~------~~-~~~~~~~~~ll~~~~~~g 321 (499)
..+++..+. +. .+....++..+...+...|++++|...+++..+. +. +.....+..+...+...|
T Consensus 90 ~~~~~al~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~ 167 (311)
T 3nf1_A 90 NLLNDALAIREKTLGKD--HPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQG 167 (311)
T ss_dssp HHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHhCCC--ChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcC
Confidence 999988764 21 1234667888889999999999999999988764 22 223456777788888889
Q ss_pred CHHHHHHHHHHHHhC------CCCC-CHhhHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 036198 322 KVEEAYKFLEEMGNK------GYPP-DIVTYNCFLKVLCDNKNGDEALRLYGRMIE 370 (499)
Q Consensus 322 ~~~~a~~~~~~m~~~------~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 370 (499)
++++|.+.+++..+. +..| ...++..+...|...|++++|...++++.+
T Consensus 168 ~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 223 (311)
T 3nf1_A 168 KYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILT 223 (311)
T ss_dssp CHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 999988888887653 1122 244677777888888888888888888765
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.34 E-value=6.2e-11 Score=109.52 Aligned_cols=246 Identities=13% Similarity=0.047 Sum_probs=174.3
Q ss_pred CCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCC----CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc------
Q 036198 232 PDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGST----ISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINS------ 301 (499)
Q Consensus 232 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~----~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~------ 301 (499)
.+..++..+...+...|++++|..+|+++.+.... ..+....++..+...|...|++++|...+++..+.
T Consensus 25 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 104 (311)
T 3nf1_A 25 ARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLG 104 (311)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhC
Confidence 34678889999999999999999999999984100 02345677888999999999999999999998764
Q ss_pred CC-CcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhC------CC-CCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHC--
Q 036198 302 GC-LPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNK------GY-PPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEV-- 371 (499)
Q Consensus 302 ~~-~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~------~~-~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-- 371 (499)
+- +.....+..+...|...|++++|.+.+++..+. +. +.....+..+...+...|++++|...++++.+.
T Consensus 105 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~ 184 (311)
T 3nf1_A 105 KDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQ 184 (311)
T ss_dssp TTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 22 234567888899999999999999999988764 22 223456888889999999999999999998764
Q ss_pred ----CCCc-ChhhHHHHHHHHHhcCCchHHHHHHHHHhHC-------CCCCCHH-------HHHHHHHHHHhCCCHHHHH
Q 036198 372 ----GCWP-SVQTYNMLISMYFELGEPDGAFETWHEMDKR-------GCAQDVD-------TYCVMIDGLFDCSKVEEAC 432 (499)
Q Consensus 372 ----~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-------~~~p~~~-------~~~~li~~~~~~g~~~~a~ 432 (499)
+..| ...++..+...|...|++++|.+.++++.+. ...+... .+..+...+...+.+.++.
T Consensus 185 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 264 (311)
T 3nf1_A 185 TKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYG 264 (311)
T ss_dssp HTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC
T ss_pred HHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHH
Confidence 2123 3457888999999999999999999998752 1112111 1222222333344555555
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcC
Q 036198 433 FLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHMRKFYN 478 (499)
Q Consensus 433 ~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~ 478 (499)
..++...... +....++..+..+|.+.|++++|.+++++..+..+
T Consensus 265 ~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~ 309 (311)
T 3nf1_A 265 GWYKACKVDS-PTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRK 309 (311)
T ss_dssp ---------C-HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC
T ss_pred HHHhhcCCCC-chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhh
Confidence 6666655432 23466788899999999999999999999887654
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.34 E-value=8.1e-10 Score=105.44 Aligned_cols=301 Identities=10% Similarity=-0.047 Sum_probs=207.4
Q ss_pred CCHHHHHHHHHHH--HhCCChHHHHHHHHHhhcC---C--CCChhhHHHH--------------HH---------HHHHH
Q 036198 175 PEINALNLLLDAL--CKCGLVDYAETICKRVKNK---V--KPNANTYNIL--------------GM---------QTLEE 224 (499)
Q Consensus 175 ~~~~~~~~li~~~--~~~g~~~~A~~~~~~m~~~---~--~p~~~~~~~l--------------a~---------~~~~~ 224 (499)
|+..+-+.+-..| .+.+++++|.++++++... . .++...|-.+ +. +.++.
T Consensus 8 ~~~~v~~~l~~wy~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~ 87 (378)
T 3q15_A 8 PSSRVGVKINEWYKMIRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELLET 87 (378)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHGGGBCCCHHHHHHHHHHHHHHHHHHHTCCC--------CHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcCcccccccccchHHHHHH
Confidence 4555555555566 7889999999999987642 2 2223333333 22 44444
Q ss_pred HHHcCCCCCH-H---HHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 036198 225 MIQMGHAPDN-F---TYNTAIDTFCKARMVTEAADLFEFMRTKGSTI--SSPTAKTYAIMIVALVQNDRMEECFSLLGHM 298 (499)
Q Consensus 225 m~~~g~~p~~-~---~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~--~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m 298 (499)
+.....+.+. . .+......+...|++++|+..|++..+..... ......++..+...|...|+++.|...+.+.
T Consensus 88 i~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~a 167 (378)
T 3q15_A 88 IETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQA 167 (378)
T ss_dssp HHGGGHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HhccCCCCccHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHH
Confidence 3321111110 0 12233455678999999999999998753210 0112567888899999999999999999988
Q ss_pred HHcC--C---Cc-CHHhHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCC-CCHhhHHHHHHHHHHcCCHHHHHHHHHH
Q 036198 299 INSG--C---LP-DVSTYKEVLEGMCLAGKVEEAYKFLEEMGNK----GYP-PDIVTYNCFLKVLCDNKNGDEALRLYGR 367 (499)
Q Consensus 299 ~~~~--~---~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~----~~~-p~~~~~~~li~~~~~~g~~~~a~~~~~~ 367 (499)
.+.. . .+ ...+++.+...|...|++++|.+.+++..+. +.. ....++..+...|...|++++|...+++
T Consensus 168 l~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~ 247 (378)
T 3q15_A 168 LDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQK 247 (378)
T ss_dssp HHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 7531 1 11 2456788889999999999999999887653 211 1235778888999999999999999999
Q ss_pred HHH-----CCCCcChhhHHHHHHHHHhcCCchHHHHHHHHHhHCC----CCCCHHHHHHHHHHHHhCCC---HHHHHHHH
Q 036198 368 MIE-----VGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRG----CAQDVDTYCVMIDGLFDCSK---VEEACFLL 435 (499)
Q Consensus 368 m~~-----~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~----~~p~~~~~~~li~~~~~~g~---~~~a~~~~ 435 (499)
..+ .. +....++..+...|.+.|++++|...+++..+.. -+.....+..+...+...++ +.+|...+
T Consensus 248 al~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~ 326 (378)
T 3q15_A 248 AAKVSREKVP-DLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYF 326 (378)
T ss_dssp HHHHHHHHCG-GGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHH
T ss_pred HHHHHHhhCC-hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 876 33 2336788899999999999999999999887631 12223455666667777888 77777777
Q ss_pred HHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCh
Q 036198 436 EEVVNKGLKLP-YRKFDSYLMQLSVIGDLGAIHKLSDHMRKFYNP 479 (499)
Q Consensus 436 ~~m~~~~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~ 479 (499)
++ .+..|+ ...+..+...|...|++++|.+.+++..+....
T Consensus 327 ~~---~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~ 368 (378)
T 3q15_A 327 EK---KNLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLKAQED 368 (378)
T ss_dssp HH---TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred Hh---CCChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 65 332222 346667889999999999999999998875443
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.32 E-value=7e-11 Score=116.27 Aligned_cols=215 Identities=12% Similarity=0.022 Sum_probs=145.4
Q ss_pred HhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHHHH
Q 036198 250 VTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRM-EECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYK 328 (499)
Q Consensus 250 ~~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~-~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~ 328 (499)
++++++.++...... +.+...+..+...+...|++ ++|.+.|++..+.. +.+...|..+...|...|++++|.+
T Consensus 84 ~~~al~~l~~~~~~~----~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~ 158 (474)
T 4abn_A 84 MEKTLQQMEEVLGSA----QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHT 158 (474)
T ss_dssp HHHHHHHHHHHHTTC----CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHhccC----chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 455566666555432 34566777777777777777 77777777776653 3346667777777777777777777
Q ss_pred HHHHHHhCCCCCCHhhHHHHHHHHHHc---------CCHHHHHHHHHHHHHCCCCcChhhHHHHHHHHHhc--------C
Q 036198 329 FLEEMGNKGYPPDIVTYNCFLKVLCDN---------KNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFEL--------G 391 (499)
Q Consensus 329 ~~~~m~~~~~~p~~~~~~~li~~~~~~---------g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~--------~ 391 (499)
.|+...+.. |+...+..+...+... |++++|...|++..+.. +.+...|..+..+|... |
T Consensus 159 ~~~~al~~~--p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g 235 (474)
T 4abn_A 159 CFSGALTHC--KNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNPK 235 (474)
T ss_dssp HHHHHHTTC--CCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCHH
T ss_pred HHHHHHhhC--CCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhccccc
Confidence 777776653 4556667777777777 77777777777777653 23456677777777776 7
Q ss_pred CchHHHHHHHHHhHCCCC--CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 036198 392 EPDGAFETWHEMDKRGCA--QDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKL 469 (499)
Q Consensus 392 ~~~~a~~~~~~m~~~~~~--p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~ 469 (499)
++++|.+.|++..+.... -+...|..+..+|...|++++|...|++..+... -+...+..+..++...|++++|.+.
T Consensus 236 ~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p-~~~~a~~~l~~~~~~lg~~~eAi~~ 314 (474)
T 4abn_A 236 ISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDP-AWPEPQQREQQLLEFLSRLTSLLES 314 (474)
T ss_dssp HHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777787777777664210 2667777777777788888888888887776652 2556677777777777777777765
Q ss_pred HHHH
Q 036198 470 SDHM 473 (499)
Q Consensus 470 ~~~m 473 (499)
+.++
T Consensus 315 ~~~~ 318 (474)
T 4abn_A 315 KGKT 318 (474)
T ss_dssp TTTC
T ss_pred hccc
Confidence 5443
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.28 E-value=1.8e-10 Score=113.34 Aligned_cols=198 Identities=7% Similarity=-0.091 Sum_probs=171.7
Q ss_pred CCHHHHHHHHHHHHhcCCH-hHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHhH
Q 036198 232 PDNFTYNTAIDTFCKARMV-TEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTY 310 (499)
Q Consensus 232 p~~~~~~~li~~~~~~g~~-~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~ 310 (499)
.+...+..+..++...|++ ++|++.|++..+.. +.+..+|..+...|...|++++|...|++..+.. |+...+
T Consensus 100 ~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~----p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~ 173 (474)
T 4abn_A 100 VEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE----PELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHC--KNKVSL 173 (474)
T ss_dssp CCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTC--CCHHHH
T ss_pred hhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCHHHH
Confidence 3788899999999999999 99999999999875 4468899999999999999999999999999874 777888
Q ss_pred HHHHHHHHhc---------CCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHc--------CCHHHHHHHHHHHHHCCC
Q 036198 311 KEVLEGMCLA---------GKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDN--------KNGDEALRLYGRMIEVGC 373 (499)
Q Consensus 311 ~~ll~~~~~~---------g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~--------g~~~~a~~~~~~m~~~~~ 373 (499)
..+...+... |++++|.+.+++..+.... +...|..+..+|... |++++|...|++..+...
T Consensus 174 ~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p 252 (474)
T 4abn_A 174 QNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVL-DGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDR 252 (474)
T ss_dssp HHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCG
T ss_pred HHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCC
Confidence 9999999999 9999999999999887533 678899999999998 999999999999998541
Q ss_pred C--cChhhHHHHHHHHHhcCCchHHHHHHHHHhHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHH
Q 036198 374 W--PSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEE 437 (499)
Q Consensus 374 ~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 437 (499)
. -+...|..+..+|...|++++|.+.|++..+.. +-+...+..+...+...|++++|.+.+.+
T Consensus 253 ~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~a~~~l~~~~~~lg~~~eAi~~~~~ 317 (474)
T 4abn_A 253 KASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD-PAWPEPQQREQQLLEFLSRLTSLLESKGK 317 (474)
T ss_dssp GGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred CcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 1 367899999999999999999999999988753 23566788888888889999988876543
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.27 E-value=4.3e-09 Score=100.13 Aligned_cols=281 Identities=11% Similarity=-0.015 Sum_probs=193.1
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHhhcCCCCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHH
Q 036198 180 LNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEF 259 (499)
Q Consensus 180 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~~~~~la~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 259 (499)
+......+...|++++|...+++.....+++... .-...++.+...+...|++++|.+.+++
T Consensus 17 ~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~------------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 78 (373)
T 1hz4_A 17 NALRAQVAINDGNPDEAERLAKLALEELPPGWFY------------------SRIVATSVLGEVLHCKGELTRSLALMQQ 78 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHH------------------HHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchh------------------HHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 3444556678999999999998876532111000 0122566777888899999999999998
Q ss_pred HHHcCCCCCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc----CCC--c-CHHhHHHHHHHHHhcCCHHHHHHHH
Q 036198 260 MRTKGSTISSP--TAKTYAIMIVALVQNDRMEECFSLLGHMINS----GCL--P-DVSTYKEVLEGMCLAGKVEEAYKFL 330 (499)
Q Consensus 260 m~~~~~~~~~p--~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~----~~~--~-~~~~~~~ll~~~~~~g~~~~a~~~~ 330 (499)
..........+ ...++..+...+...|++++|...+++..+. +.. | ....+..+...+...|++++|...+
T Consensus 79 al~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 158 (373)
T 1hz4_A 79 TEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASA 158 (373)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHhcCcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 77632100011 1234567778889999999999999988753 221 2 2345666788899999999999999
Q ss_pred HHHHhCCCC----CCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCh-hhHH-----HHHHHHHhcCCchHHHHHH
Q 036198 331 EEMGNKGYP----PDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSV-QTYN-----MLISMYFELGEPDGAFETW 400 (499)
Q Consensus 331 ~~m~~~~~~----p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~-~~~~-----~li~~~~~~~~~~~a~~~~ 400 (499)
++....... ....++..+...+...|++++|...+++.......++. ..+. ..+..+...|++++|...+
T Consensus 159 ~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~ 238 (373)
T 1hz4_A 159 RSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWL 238 (373)
T ss_dssp HHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 987654221 12346777888889999999999999988753211111 1121 2334477899999999999
Q ss_pred HHHhHCCCCC---CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHC----CCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHH
Q 036198 401 HEMDKRGCAQ---DVDTYCVMIDGLFDCSKVEEACFLLEEVVNK----GLKLPY-RKFDSYLMQLSVIGDLGAIHKLSDH 472 (499)
Q Consensus 401 ~~m~~~~~~p---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~ 472 (499)
+...+....+ ....+..+...+...|++++|...+++.... |..++. ..+..+..++...|+.++|.+.+++
T Consensus 239 ~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~ 318 (373)
T 1hz4_A 239 RHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLD 318 (373)
T ss_dssp HHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 9887543221 1335667778889999999999999887643 322222 3566677888999999999999998
Q ss_pred HHhhcC
Q 036198 473 MRKFYN 478 (499)
Q Consensus 473 m~~~~~ 478 (499)
..+...
T Consensus 319 al~~~~ 324 (373)
T 1hz4_A 319 ALKLAN 324 (373)
T ss_dssp HHHHHH
T ss_pred HHHHhc
Confidence 876543
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.27 E-value=1.2e-09 Score=104.47 Aligned_cols=238 Identities=10% Similarity=-0.013 Sum_probs=176.8
Q ss_pred HHHHHHHhCCChHHHHHHHHHhhcCCCCChhhHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHhHHHHHHHHH
Q 036198 182 LLLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQTLEEMIQMGHAP-DNFTYNTAIDTFCKARMVTEAADLFEFM 260 (499)
Q Consensus 182 ~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~~~~~la~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m 260 (499)
.....+...|++++|.+.|++...... ..+-.+ ...++..+...|...|++++|...+++.
T Consensus 108 ~~g~~~~~~g~~~~A~~~~~~al~~~~------------------~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~a 169 (383)
T 3ulq_A 108 FRGMYELDQREYLSAIKFFKKAESKLI------------------FVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQA 169 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTGG------------------GCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHh------------------hCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 366677889999999999999765200 001111 3467889999999999999999999988
Q ss_pred HHcCCCCC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-c----CHHhHHHHHHHHHhcCCHHHHHHHHHH
Q 036198 261 RTKGSTIS---SPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCL-P----DVSTYKEVLEGMCLAGKVEEAYKFLEE 332 (499)
Q Consensus 261 ~~~~~~~~---~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~-~----~~~~~~~ll~~~~~~g~~~~a~~~~~~ 332 (499)
.+...... .....+++.+...|...|++++|...|++..+.... + ...++..+...|...|++++|.+.+++
T Consensus 170 l~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~ 249 (383)
T 3ulq_A 170 YEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKR 249 (383)
T ss_dssp HHHHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 76431100 112457888899999999999999999988754111 1 124788899999999999999999998
Q ss_pred HHh-----CCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCcChhhHHHHHHHHHhcCC---chHHHHHH
Q 036198 333 MGN-----KGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEV----GCWPSVQTYNMLISMYFELGE---PDGAFETW 400 (499)
Q Consensus 333 m~~-----~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~~~~~~~~~li~~~~~~~~---~~~a~~~~ 400 (499)
..+ ...+....++..+...+.+.|++++|...+++..+. +-......+..+...|...|+ .++|..++
T Consensus 250 al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~ 329 (383)
T 3ulq_A 250 AIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFL 329 (383)
T ss_dssp HHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHH
T ss_pred HHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 776 321334677889999999999999999999987753 111223345777888888888 66777777
Q ss_pred HHHhHCCCCCC-HHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 036198 401 HEMDKRGCAQD-VDTYCVMIDGLFDCSKVEEACFLLEEVVN 440 (499)
Q Consensus 401 ~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 440 (499)
+.. +..|+ ...+..+...|...|++++|...+++..+
T Consensus 330 ~~~---~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 330 ESK---MLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHT---TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHC---cCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 665 22333 34677788899999999999999998875
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.25 E-value=1.2e-09 Score=106.63 Aligned_cols=336 Identities=11% Similarity=-0.005 Sum_probs=224.3
Q ss_pred HHHHHhcchhhhhhHHHHHHHHHHHHHcCCCccc---------HHHH---HHHHHHHHHhhhcCCCCCHHHHHHHHHHHH
Q 036198 121 MIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVP---------VDVL---LMILKQYTEKIKVKTQPEINALNLLLDALC 188 (499)
Q Consensus 121 li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~---------~~~~---~~~l~~~~~~~~~~~~~~~~~~~~li~~~~ 188 (499)
+...+. +.|++++|.++|++..+.+....- .... ...+..|.+.. ..+...+..+...+.
T Consensus 9 la~~~~----~~g~~~~A~~~~~~aa~~g~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~----~~~~~A~~~Lg~~~~ 80 (452)
T 3e4b_A 9 LANEAL----KRGDTVTAQQNYQQLAELGYSEAQVGLADIQVGTRDPAQIKQAEATYRAAA----DTSPRAQARLGRLLA 80 (452)
T ss_dssp HHHHHH----HHHHHHHHHHHHHHHHHHTCCTGGGTCC--------------------------------CHHHHHHHHH
T ss_pred HHHHHH----hCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHH----hCCHHHHHHHHHHHH
Confidence 344555 889999999999998877632110 0111 22333333222 225566777777566
Q ss_pred hCC-----ChHHHHHHHHHhhcCCCCChhhHHHH---------------HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 036198 189 KCG-----LVDYAETICKRVKNKVKPNANTYNIL---------------GMQTLEEMIQMGHAPDNFTYNTAIDTFCKAR 248 (499)
Q Consensus 189 ~~g-----~~~~A~~~~~~m~~~~~p~~~~~~~l---------------a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g 248 (499)
..| ++++|...|++..+...++ .+..+ +.+.+......|. ...+..+...|...+
T Consensus 81 ~~~~~~~~~~~~A~~~~~~Aa~~g~~~--A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~---~~a~~~Lg~~y~~~~ 155 (452)
T 3e4b_A 81 AKPGATEAEHHEAESLLKKAFANGEGN--TLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGY---PEAGLAQVLLYRTQG 155 (452)
T ss_dssp TC--CCHHHHHHHHHHHHHHHHTTCSS--CHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTC---TTHHHHHHHHHHHHT
T ss_pred hCCCCCCcCHHHHHHHHHHHHHCCCHH--HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCC---HHHHHHHHHHHHcCC
Confidence 655 7789999999877643333 33333 4445555554443 345556777777777
Q ss_pred CHhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhc----C
Q 036198 249 MVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQND---RMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLA----G 321 (499)
Q Consensus 249 ~~~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~---~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~----g 321 (499)
.++++......+.+.- ...+...+..+...|...| +.++|+..|+...+.| .++...+..+...|... +
T Consensus 156 ~~~~~~~~a~~~~~~a---~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~~~ 231 (452)
T 3e4b_A 156 TYDQHLDDVERICKAA---LNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDATLGTP 231 (452)
T ss_dssp CGGGGHHHHHHHHHHH---TTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGGGSSC
T ss_pred CcccCHHHHHHHHHHH---HcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCCCC
Confidence 6555554433333222 1122338888888999999 8999999999999987 45555556677777555 7
Q ss_pred CHHHHHHHHHHHHhCCCCCCHhhHHHHHHH-H--HHcCCHHHHHHHHHHHHHCCCCcChhhHHHHHHHHHhcC-----Cc
Q 036198 322 KVEEAYKFLEEMGNKGYPPDIVTYNCFLKV-L--CDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELG-----EP 393 (499)
Q Consensus 322 ~~~~a~~~~~~m~~~~~~p~~~~~~~li~~-~--~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~-----~~ 393 (499)
++++|.+.|+... .| +...+..+... + ...+++++|...|++..+.| +...+..|-..|. .| ++
T Consensus 232 d~~~A~~~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~ 303 (452)
T 3e4b_A 232 DEKTAQALLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADA 303 (452)
T ss_dssp CHHHHHHHHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCH
T ss_pred CHHHHHHHHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCH
Confidence 9999999999987 33 55666666666 4 46899999999999999877 5667777777777 55 99
Q ss_pred hHHHHHHHHHhHCCCCCCHHHHHHHHHHHHh----CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHH
Q 036198 394 DGAFETWHEMDKRGCAQDVDTYCVMIDGLFD----CSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSV----IGDLGA 465 (499)
Q Consensus 394 ~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~----~g~~~~ 465 (499)
++|.+.|++.. . -+...+..+-..|.. ..+.++|..+|++..+.|. ......+...|.. ..+.++
T Consensus 304 ~~A~~~~~~Aa-~---g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~G~g~~~d~~~ 376 (452)
T 3e4b_A 304 KAAEAHFEKAV-G---REVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQ---NSADFAIAQLFSQGKGTKPDPLN 376 (452)
T ss_dssp HHHHHHHHTTT-T---TCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTC---TTHHHHHHHHHHSCTTBCCCHHH
T ss_pred HHHHHHHHHHh-C---CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhCh---HHHHHHHHHHHHhCCCCCCCHHH
Confidence 99999999887 3 366677777777766 4499999999999998874 3455566666654 468999
Q ss_pred HHHHHHHHHhhcChhHHHHHHHH
Q 036198 466 IHKLSDHMRKFYNPVIARRLALN 488 (499)
Q Consensus 466 a~~~~~~m~~~~~~~~~~~~~~~ 488 (499)
|...++...+.+.+.-...+...
T Consensus 377 A~~~~~~A~~~g~~~a~~~l~~l 399 (452)
T 3e4b_A 377 AYVFSQLAKAQDTPEANDLATQL 399 (452)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHH
Confidence 99999999998877655444443
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.24 E-value=5.1e-08 Score=98.87 Aligned_cols=224 Identities=11% Similarity=0.053 Sum_probs=171.8
Q ss_pred hHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHH-HHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHHHHH
Q 036198 251 TEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECF-SLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKF 329 (499)
Q Consensus 251 ~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~-~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~ 329 (499)
+.+..+|++..... +-....|-.....+...|+.++|. ++|++.... ++.+...+-..+...-+.|+++.|.++
T Consensus 326 ~Rv~~~Ye~aL~~~----p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~i 400 (679)
T 4e6h_A 326 ARMTYVYMQAAQHV----CFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETT 400 (679)
T ss_dssp HHHHHHHHHHHHHT----TTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHc----CCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 44667888888764 557888999999999999999996 999999875 355666677788888899999999999
Q ss_pred HHHHHhCC---------CCCC------------HhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcChhhHHHHHHHHH
Q 036198 330 LEEMGNKG---------YPPD------------IVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYF 388 (499)
Q Consensus 330 ~~~m~~~~---------~~p~------------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~ 388 (499)
|+.+.... -.|+ ...|...+....+.|+.+.|..+|....+.........|......-.
T Consensus 401 yek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~ 480 (679)
T 4e6h_A 401 ILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEY 480 (679)
T ss_dssp HHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Confidence 99987641 0132 34688888888889999999999999987611122334433332223
Q ss_pred hc-CCchHHHHHHHHHhHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCCHHH
Q 036198 389 EL-GEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKL--PYRKFDSYLMQLSVIGDLGA 465 (499)
Q Consensus 389 ~~-~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p--~~~~~~~ll~~~~~~g~~~~ 465 (499)
+. ++.+.|.++|+...+. .+-+...+...+......|+.+.|..+|++.......+ ....|..+++--.+.|+.+.
T Consensus 481 ~~~~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~ 559 (679)
T 4e6h_A 481 HISKDTKTACKVLELGLKY-FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNS 559 (679)
T ss_dssp TTTSCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHH
T ss_pred HhCCCHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 33 4589999999998876 34466667788888888999999999999998775422 34578888888888999999
Q ss_pred HHHHHHHHHhhcChh
Q 036198 466 IHKLSDHMRKFYNPV 480 (499)
Q Consensus 466 a~~~~~~m~~~~~~~ 480 (499)
+.++.+++.+.+|..
T Consensus 560 ~~~v~~R~~~~~P~~ 574 (679)
T 4e6h_A 560 VRTLEKRFFEKFPEV 574 (679)
T ss_dssp HHHHHHHHHHHSTTC
T ss_pred HHHHHHHHHHhCCCC
Confidence 999999999998875
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.24 E-value=2.1e-09 Score=90.74 Aligned_cols=164 Identities=13% Similarity=0.016 Sum_probs=100.9
Q ss_pred HHHHHHHHHHHhCCChHHHHHHHHHhhcCCCCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHH
Q 036198 178 NALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLF 257 (499)
Q Consensus 178 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~~~~~la~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~ 257 (499)
..|..+...+...|++++|.+.|+++... .+.+...+..+...+...|++++|.+.+
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-----------------------~~~~~~~~~~~~~~~~~~~~~~~A~~~~ 65 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDA-----------------------DAFDVDVALHLGIAYVKTGAVDRGTELL 65 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCT-----------------------TSCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHh-----------------------CccChHHHHHHHHHHHHcCCHHHHHHHH
Confidence 34556666666677777777776665442 1124555666666667777777777777
Q ss_pred HHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 036198 258 EFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKG 337 (499)
Q Consensus 258 ~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~ 337 (499)
+++.+.. +.+...+..+...+...|++++|.+.++++.+.. +.+...+..+...+...|++++|.+.++...+..
T Consensus 66 ~~~~~~~----~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~ 140 (186)
T 3as5_A 66 ERSLADA----PDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR 140 (186)
T ss_dssp HHHHHHC----TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHhcC----CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC
Confidence 7666653 3355666666666666677777777776666543 3345556666666666666666666666665543
Q ss_pred CCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 036198 338 YPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIE 370 (499)
Q Consensus 338 ~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 370 (499)
. .+...+..+...+...|++++|...+++..+
T Consensus 141 ~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 172 (186)
T 3as5_A 141 P-NEGKVHRAIAFSYEQMGRHEEALPHFKKANE 172 (186)
T ss_dssp T-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred c-cchHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 2 2455566666666666666666666666554
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.23 E-value=2.8e-10 Score=103.41 Aligned_cols=167 Identities=16% Similarity=0.067 Sum_probs=123.4
Q ss_pred HHhCCChHHHHHHHHHhhcCCCCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHc---
Q 036198 187 LCKCGLVDYAETICKRVKNKVKPNANTYNILGMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTK--- 263 (499)
Q Consensus 187 ~~~~g~~~~A~~~~~~m~~~~~p~~~~~~~la~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--- 263 (499)
....|++++|...|++..+ ++........+....++..+...|...|++++|+..|++..+.
T Consensus 11 ~~~~~~~~~A~~~~~~al~---------------~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 75 (283)
T 3edt_B 11 SSGLVPRGSAVPLCKQALE---------------DLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREK 75 (283)
T ss_dssp --CCSCSSSHHHHHHHHHH---------------HHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHH---------------HHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHH
Confidence 3456888888888887543 4555444333345678899999999999999999999988765
Q ss_pred ---CCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc------C-CCcCHHhHHHHHHHHHhcCCHHHHHHHHHHH
Q 036198 264 ---GSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINS------G-CLPDVSTYKEVLEGMCLAGKVEEAYKFLEEM 333 (499)
Q Consensus 264 ---~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~------~-~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m 333 (499)
+. .+....++..+...|...|++++|...+.+..+. . .+....++..+...|...|++++|.+.+++.
T Consensus 76 ~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 153 (283)
T 3edt_B 76 TLGKD--HPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRA 153 (283)
T ss_dssp HTCTT--CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HcCCc--chHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 21 1234668888999999999999999999988764 1 1234566778888888999999999988887
Q ss_pred HhC------CCCC-CHhhHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 036198 334 GNK------GYPP-DIVTYNCFLKVLCDNKNGDEALRLYGRMIE 370 (499)
Q Consensus 334 ~~~------~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 370 (499)
.+. +..| ...++..+...|...|++++|...+++..+
T Consensus 154 l~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~ 197 (283)
T 3edt_B 154 LEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILT 197 (283)
T ss_dssp HHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 654 1122 345677788888888888888888888765
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.23 E-value=1.1e-09 Score=92.45 Aligned_cols=167 Identities=11% Similarity=0.032 Sum_probs=105.8
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcChhhHHHHHHHHH
Q 036198 309 TYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYF 388 (499)
Q Consensus 309 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~ 388 (499)
.+..+...+...|++++|.+.++.+.+... .+...+..+...+...|++++|...++++.+.. +.+...+..+...+.
T Consensus 10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~ 87 (186)
T 3as5_A 10 YYRDKGISHAKAGRYSQAVMLLEQVYDADA-FDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTYV 87 (186)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHTTTCCTTS-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCc-cChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHH
Confidence 344455555666666666666665554422 245556666666666666666666666665542 234556666666666
Q ss_pred hcCCchHHHHHHHHHhHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 036198 389 ELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHK 468 (499)
Q Consensus 389 ~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~ 468 (499)
..|++++|.+.++.+.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|.+
T Consensus 88 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~ 165 (186)
T 3as5_A 88 QVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEEALP 165 (186)
T ss_dssp HHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHHHHH
Confidence 6777777777776665542 2355666667777777777777777777776654 2356677777777777788887777
Q ss_pred HHHHHHhhcCh
Q 036198 469 LSDHMRKFYNP 479 (499)
Q Consensus 469 ~~~~m~~~~~~ 479 (499)
.+++..+..+.
T Consensus 166 ~~~~~~~~~~~ 176 (186)
T 3as5_A 166 HFKKANELDEG 176 (186)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHcCCC
Confidence 77777665433
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.20 E-value=2.9e-08 Score=94.55 Aligned_cols=236 Identities=6% Similarity=-0.063 Sum_probs=172.8
Q ss_pred HHHHHHHhCCChHHHHHHHHHhhcCC--CCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHH
Q 036198 182 LLLDALCKCGLVDYAETICKRVKNKV--KPNANTYNILGMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEF 259 (499)
Q Consensus 182 ~li~~~~~~g~~~~A~~~~~~m~~~~--~p~~~~~~~la~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 259 (499)
.....+...|++++|...|++..... .++. .....++..+...|...|+++.|...+++
T Consensus 106 ~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~-------------------~~~a~~~~~lg~~y~~~~~~~~A~~~~~~ 166 (378)
T 3q15_A 106 FRGMYEFDQKEYVEAIGYYREAEKELPFVSDD-------------------IEKAEFHFKVAEAYYHMKQTHVSMYHILQ 166 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCH-------------------HHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHhhCCCh-------------------HHHHHHHHHHHHHHHHcCCcHHHHHHHHH
Confidence 34455678899999999999876520 0110 01355788899999999999999999998
Q ss_pred HHHcCCCCCC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc----CCC-cCHHhHHHHHHHHHhcCCHHHHHHHHH
Q 036198 260 MRTKGSTISS---PTAKTYAIMIVALVQNDRMEECFSLLGHMINS----GCL-PDVSTYKEVLEGMCLAGKVEEAYKFLE 331 (499)
Q Consensus 260 m~~~~~~~~~---p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~----~~~-~~~~~~~~ll~~~~~~g~~~~a~~~~~ 331 (499)
..+....... ....+++.+...|...|++++|...|++..+. +.. ....++..+...|...|++++|.+.++
T Consensus 167 al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~ 246 (378)
T 3q15_A 167 ALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQ 246 (378)
T ss_dssp HHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 8764211011 12567888999999999999999999988753 111 123567788899999999999999999
Q ss_pred HHHh-----CCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCC----CcChhhHHHHHHHHHhcCC---chHHHHH
Q 036198 332 EMGN-----KGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGC----WPSVQTYNMLISMYFELGE---PDGAFET 399 (499)
Q Consensus 332 ~m~~-----~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~----~~~~~~~~~li~~~~~~~~---~~~a~~~ 399 (499)
+..+ .... ...++..+...+.+.|++++|...+++..+... ......+..+-..|...++ +.+|...
T Consensus 247 ~al~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~ 325 (378)
T 3q15_A 247 KAAKVSREKVPDL-LPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSY 325 (378)
T ss_dssp HHHHHHHHHCGGG-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHH
T ss_pred HHHHHHHhhCChh-HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence 8876 4322 367888899999999999999999999886421 1123455666666777777 6677776
Q ss_pred HHHHhHCCCCCC-HHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 036198 400 WHEMDKRGCAQD-VDTYCVMIDGLFDCSKVEEACFLLEEVVN 440 (499)
Q Consensus 400 ~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 440 (499)
++. .+..|+ ...+..+...|...|++++|...+++..+
T Consensus 326 ~~~---~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 326 FEK---KNLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHH---TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHh---CCChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 665 322232 34566788899999999999999998764
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.19 E-value=2.2e-08 Score=97.83 Aligned_cols=226 Identities=12% Similarity=0.054 Sum_probs=170.4
Q ss_pred CHHHHHHHHHHHHhcC---CHhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHcCCCc
Q 036198 233 DNFTYNTAIDTFCKAR---MVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQN----DRMEECFSLLGHMINSGCLP 305 (499)
Q Consensus 233 ~~~~~~~li~~~~~~g---~~~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~----~~~~~a~~~~~~m~~~~~~~ 305 (499)
++..+..+...|.+.| +.++|++.|+...+.| .++...+..+...|... +++++|...|+... . -
T Consensus 175 ~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g----~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-~---g 246 (452)
T 3e4b_A 175 TDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG----TVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA-P---G 246 (452)
T ss_dssp CTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT----CSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-G---G
T ss_pred CHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC----CHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-C---C
Confidence 3338888999999999 9999999999999987 46677667777777655 79999999999987 4 3
Q ss_pred CHHhHHHHHHH-H--HhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcC-----CHHHHHHHHHHHHHCCCCcCh
Q 036198 306 DVSTYKEVLEG-M--CLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNK-----NGDEALRLYGRMIEVGCWPSV 377 (499)
Q Consensus 306 ~~~~~~~ll~~-~--~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g-----~~~~a~~~~~~m~~~~~~~~~ 377 (499)
+...+..+-.. + ...+++++|.+.|++..+.| +...+..+...|. .| ++++|...|++.. .| +.
T Consensus 247 ~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-~g---~~ 318 (452)
T 3e4b_A 247 YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-GR---EV 318 (452)
T ss_dssp STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-TT---CH
T ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-CC---CH
Confidence 55566666665 3 46899999999999999886 6677778887776 55 9999999999987 43 56
Q ss_pred hhHHHHHHHHHh----cCCchHHHHHHHHHhHCCCCCCHHHHHHHHHHHHh----CCCHHHHHHHHHHHHHCCCCCCHHH
Q 036198 378 QTYNMLISMYFE----LGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFD----CSKVEEACFLLEEVVNKGLKLPYRK 449 (499)
Q Consensus 378 ~~~~~li~~~~~----~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~~~p~~~~ 449 (499)
..+..|-..|.. ..+.++|...|+...+.|. ......+-..|.. ..+.++|..+++...+.|.. +...
T Consensus 319 ~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~~-~a~~ 394 (452)
T 3e4b_A 319 AADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQ---NSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDTP-EAND 394 (452)
T ss_dssp HHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTC---TTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCCH-HHHH
T ss_pred HHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhCh---HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCCH-HHHH
Confidence 677777777766 3489999999999988764 3345556666653 46899999999999998843 3333
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhhcC
Q 036198 450 FDSYLMQLSVIGDLGAIHKLSDHMRKFYN 478 (499)
Q Consensus 450 ~~~ll~~~~~~g~~~~a~~~~~~m~~~~~ 478 (499)
....+......++.++|.++.++.++..+
T Consensus 395 ~l~~l~~~~~~~~~~~a~~~~~~~~~~~~ 423 (452)
T 3e4b_A 395 LATQLEAPLTPAQRAEGQRLVQQELAARG 423 (452)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHhcc
Confidence 33333333445567778888777766543
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.18 E-value=1.3e-08 Score=96.70 Aligned_cols=274 Identities=10% Similarity=-0.024 Sum_probs=189.8
Q ss_pred hhhhHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHhhcCCCCC
Q 036198 131 KAKQFRLVCSMLDYMKRNNKVFVPVDVLLMILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPN 210 (499)
Q Consensus 131 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~ 210 (499)
..|++++|...+++....... .+.. .-..+++.+...+...|++++|.+.+++....
T Consensus 26 ~~g~~~~A~~~~~~al~~~~~-~~~~------------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~---- 82 (373)
T 1hz4_A 26 NDGNPDEAERLAKLALEELPP-GWFY------------------SRIVATSVLGEVLHCKGELTRSLALMQQTEQM---- 82 (373)
T ss_dssp HTTCHHHHHHHHHHHHHTCCT-TCHH------------------HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH----
T ss_pred HCCCHHHHHHHHHHHHHcCCC-Cchh------------------HHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH----
Confidence 789999999999998765410 0000 01125677778888999999999999886531
Q ss_pred hhhHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCC-CC--C-CHHHHHHHHHHHHHc
Q 036198 211 ANTYNILGMQTLEEMIQMGHA-PDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTI-SS--P-TAKTYAIMIVALVQN 285 (499)
Q Consensus 211 ~~~~~~la~~~~~~m~~~g~~-p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~-~~--p-~~~~~~~ll~~~~~~ 285 (499)
..+.|.. ....++..+...+...|++++|.+.+++..+..... .. | ....+..+...+...
T Consensus 83 --------------~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~ 148 (373)
T 1hz4_A 83 --------------ARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAW 148 (373)
T ss_dssp --------------HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHT
T ss_pred --------------HHhcCcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHh
Confidence 1112211 113346677888999999999999999887632100 11 2 245667788889999
Q ss_pred CCHHHHHHHHHHHHHcCCC----cCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-hhHH-----HHHHHHHHc
Q 036198 286 DRMEECFSLLGHMINSGCL----PDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDI-VTYN-----CFLKVLCDN 355 (499)
Q Consensus 286 ~~~~~a~~~~~~m~~~~~~----~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~-~~~~-----~li~~~~~~ 355 (499)
|++++|...+++..+.... ....++..+...+...|++++|...+++.......++. ..+. ..+..+...
T Consensus 149 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (373)
T 1hz4_A 149 ARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMT 228 (373)
T ss_dssp TCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHT
T ss_pred cCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHC
Confidence 9999999999998764321 12356777888899999999999999987653111111 1222 233447799
Q ss_pred CCHHHHHHHHHHHHHCCCCc---ChhhHHHHHHHHHhcCCchHHHHHHHHHhHC----CCCCCH-HHHHHHHHHHHhCCC
Q 036198 356 KNGDEALRLYGRMIEVGCWP---SVQTYNMLISMYFELGEPDGAFETWHEMDKR----GCAQDV-DTYCVMIDGLFDCSK 427 (499)
Q Consensus 356 g~~~~a~~~~~~m~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----~~~p~~-~~~~~li~~~~~~g~ 427 (499)
|++++|...+++.......+ ....+..+...+...|++++|...++...+. |..++. ..+..+..++...|+
T Consensus 229 g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 308 (373)
T 1hz4_A 229 GDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGR 308 (373)
T ss_dssp TCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCC
Confidence 99999999999887543211 1235677788899999999999999987542 322233 256667778889999
Q ss_pred HHHHHHHHHHHHHC
Q 036198 428 VEEACFLLEEVVNK 441 (499)
Q Consensus 428 ~~~a~~~~~~m~~~ 441 (499)
.++|...+++....
T Consensus 309 ~~~A~~~l~~al~~ 322 (373)
T 1hz4_A 309 KSDAQRVLLDALKL 322 (373)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999987643
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.16 E-value=3.2e-09 Score=108.92 Aligned_cols=166 Identities=12% Similarity=0.014 Sum_probs=147.1
Q ss_pred CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHhHHH
Q 036198 233 DNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKE 312 (499)
Q Consensus 233 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ 312 (499)
+...|+.+...|.+.|++++|++.|++..+.. +-+..+|..+..+|.+.|++++|...|++..+.. +-+...|..
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~----P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~n 82 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVF----PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSN 82 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHH
Confidence 46789999999999999999999999999875 3468899999999999999999999999999874 445788999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcChhhHHHHHHHHHhcCC
Q 036198 313 VLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGE 392 (499)
Q Consensus 313 ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~ 392 (499)
+..+|...|++++|.+.|++..+.+.. +...|+.+..+|.+.|++++|++.|++..+... -+...+..+..++...|+
T Consensus 83 Lg~~l~~~g~~~~A~~~~~kAl~l~P~-~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P-~~~~a~~~L~~~l~~~g~ 160 (723)
T 4gyw_A 83 MGNTLKEMQDVQGALQCYTRAIQINPA-FADAHSNLASIHKDSGNIPEAIASYRTALKLKP-DFPDAYCNLAHCLQIVCD 160 (723)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CChHHHhhhhhHHHhccc
Confidence 999999999999999999998886433 678999999999999999999999999988642 346789999999999999
Q ss_pred chHHHHHHHHHhH
Q 036198 393 PDGAFETWHEMDK 405 (499)
Q Consensus 393 ~~~a~~~~~~m~~ 405 (499)
+++|.+.+++..+
T Consensus 161 ~~~A~~~~~kal~ 173 (723)
T 4gyw_A 161 WTDYDERMKKLVS 173 (723)
T ss_dssp CTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999888754
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.12 E-value=3.2e-09 Score=108.92 Aligned_cols=164 Identities=16% Similarity=0.116 Sum_probs=86.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHH
Q 036198 272 AKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKV 351 (499)
Q Consensus 272 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~ 351 (499)
..+|+.+...+.+.|++++|.+.|++..+.. +-+...+..+..+|.+.|++++|.+.|++..+.+.. +...|..+..+
T Consensus 9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~-~~~a~~nLg~~ 86 (723)
T 4gyw_A 9 ADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT-FADAYSNMGNT 86 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHH
Confidence 4556666666666666666666666665542 223455555555666666666666666555554321 34455555555
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCcChhhHHHHHHHHHhcCCchHHHHHHHHHhHCCCCCCHHHHHHHHHHHHhCCCHHHH
Q 036198 352 LCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEA 431 (499)
Q Consensus 352 ~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a 431 (499)
|.+.|++++|.+.|++..+... -+...|+.+..+|...|++++|++.|++..+.. +-+...|..+...|...|++++|
T Consensus 87 l~~~g~~~~A~~~~~kAl~l~P-~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~-P~~~~a~~~L~~~l~~~g~~~~A 164 (723)
T 4gyw_A 87 LKEMQDVQGALQCYTRAIQINP-AFADAHSNLASIHKDSGNIPEAIASYRTALKLK-PDFPDAYCNLAHCLQIVCDWTDY 164 (723)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCCTTH
T ss_pred HHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHhhhhhHHHhcccHHHH
Confidence 5555555555555555554321 123455555555555555555555555554431 11334455555555555555555
Q ss_pred HHHHHHHH
Q 036198 432 CFLLEEVV 439 (499)
Q Consensus 432 ~~~~~~m~ 439 (499)
.+.+++..
T Consensus 165 ~~~~~kal 172 (723)
T 4gyw_A 165 DERMKKLV 172 (723)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55555443
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.11 E-value=9.2e-10 Score=99.90 Aligned_cols=231 Identities=16% Similarity=0.073 Sum_probs=158.3
Q ss_pred HhcCCHhHHHHHHHHHHHcCCC----CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc------CC-CcCHHhHHHH
Q 036198 245 CKARMVTEAADLFEFMRTKGST----ISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINS------GC-LPDVSTYKEV 313 (499)
Q Consensus 245 ~~~g~~~~a~~~~~~m~~~~~~----~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~------~~-~~~~~~~~~l 313 (499)
...|++++|+..|++..+.-.. ..+....++..+...|...|++++|...+++..+. +- +....++..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 3467777777777776652100 02334678889999999999999999999998864 22 2345678889
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhC------C-CCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHC------CCCc-Chhh
Q 036198 314 LEGMCLAGKVEEAYKFLEEMGNK------G-YPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEV------GCWP-SVQT 379 (499)
Q Consensus 314 l~~~~~~g~~~~a~~~~~~m~~~------~-~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~------~~~~-~~~~ 379 (499)
...|...|++++|.+.+++..+. . .+....++..+...|...|++++|...+++..+. +..| ...+
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 171 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT 171 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 99999999999999999988664 1 1224567888999999999999999999998764 1123 3567
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHhHC-------CCCCCH-HHHHHHHHHHHhCCC------HHHHHHHHHHHHHCCCCC
Q 036198 380 YNMLISMYFELGEPDGAFETWHEMDKR-------GCAQDV-DTYCVMIDGLFDCSK------VEEACFLLEEVVNKGLKL 445 (499)
Q Consensus 380 ~~~li~~~~~~~~~~~a~~~~~~m~~~-------~~~p~~-~~~~~li~~~~~~g~------~~~a~~~~~~m~~~~~~p 445 (499)
+..+...|...|++++|.+.+++..+. ...+.. ..|..+...+...+. +.++...++.... ..+.
T Consensus 172 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 250 (283)
T 3edt_B 172 KNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKV-DSPT 250 (283)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCC-CCHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCC-CCHH
Confidence 889999999999999999999988653 112222 233333333333222 2222222221111 1112
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 036198 446 PYRKFDSYLMQLSVIGDLGAIHKLSDHMRKF 476 (499)
Q Consensus 446 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~ 476 (499)
...++..+..+|...|++++|.+++++..+.
T Consensus 251 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 251 VNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3457788889999999999999999988764
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.08 E-value=1.7e-08 Score=88.61 Aligned_cols=206 Identities=11% Similarity=-0.020 Sum_probs=159.4
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHH
Q 036198 269 SPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCF 348 (499)
Q Consensus 269 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l 348 (499)
..+...+......+...|++++|...|++..+..-.++...+..+..++...|++++|.+.++...+.... +...|..+
T Consensus 4 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l 82 (228)
T 4i17_A 4 TTDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYN-LANAYIGK 82 (228)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCS-HHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcc-hHHHHHHH
Confidence 45678889999999999999999999999998764367778877999999999999999999999887533 66788899
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCcCh-------hhHHHHHHHHHhcCCchHHHHHHHHHhHCCCCCC---HHHHHHH
Q 036198 349 LKVLCDNKNGDEALRLYGRMIEVGCWPSV-------QTYNMLISMYFELGEPDGAFETWHEMDKRGCAQD---VDTYCVM 418 (499)
Q Consensus 349 i~~~~~~g~~~~a~~~~~~m~~~~~~~~~-------~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~---~~~~~~l 418 (499)
...+...|++++|...+++..+... .+. ..|..+...+...|++++|.+.|++..+. .|+ ...|..+
T Consensus 83 ~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~l 159 (228)
T 4i17_A 83 SAAYRDMKNNQEYIATLTEGIKAVP-GNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV--TSKKWKTDALYSL 159 (228)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--SCHHHHHHHHHHH
T ss_pred HHHHHHcccHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc--CCCcccHHHHHHH
Confidence 9999999999999999999987542 233 45778888889999999999999999875 454 4566666
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcChhHHHHHH
Q 036198 419 IDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHMRKFYNPVIARRLA 486 (499)
Q Consensus 419 i~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~ 486 (499)
...|...| ..+++++...+. .+...|.... ....|.+++|...+++..+..|....-...
T Consensus 160 ~~~~~~~~-----~~~~~~a~~~~~-~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~ 219 (228)
T 4i17_A 160 GVLFYNNG-----ADVLRKATPLAS-SNKEKYASEK--AKADAAFKKAVDYLGEAVTLSPNRTEIKQM 219 (228)
T ss_dssp HHHHHHHH-----HHHHHHHGGGTT-TCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHH-----HHHHHHHHhccc-CCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCCCCHHHHHH
Confidence 66765443 444555555542 3444554443 345677899999999999988776544333
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=99.08 E-value=2.9e-08 Score=89.60 Aligned_cols=221 Identities=10% Similarity=0.045 Sum_probs=154.2
Q ss_pred HHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHH
Q 036198 238 NTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGM 317 (499)
Q Consensus 238 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~ 317 (499)
.-+.++|...|+++.. .. ..|....+..+...+ ..+ |...|+++.+.+ .++..++..+..++
T Consensus 49 ~~~~Rs~iAlg~~~~~---------~~---~~~~~~a~~~la~~~-~~~----a~~~l~~l~~~~-~~~~~~~~~la~i~ 110 (310)
T 3mv2_B 49 FYKAKTLLALGQYQSQ---------DP---TSKLGKVLDLYVQFL-DTK----NIEELENLLKDK-QNSPYELYLLATAQ 110 (310)
T ss_dssp HHHHHHHHHTTCCCCC---------CS---SSTTHHHHHHHHHHH-TTT----CCHHHHHTTTTS-CCCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCccC---------CC---CCHHHHHHHHHHHHh-ccc----HHHHHHHHHhcC-CCCcHHHHHHHHHH
Confidence 3345777777776631 11 345544444444333 322 677888877665 45666666788889
Q ss_pred HhcCCHHHHHHHHHHHHhCCC-CCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCc-----ChhhHHHHHHHHH--h
Q 036198 318 CLAGKVEEAYKFLEEMGNKGY-PPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWP-----SVQTYNMLISMYF--E 389 (499)
Q Consensus 318 ~~~g~~~~a~~~~~~m~~~~~-~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~-----~~~~~~~li~~~~--~ 389 (499)
...|++++|++++.+....+. .-+...+..++..+.+.|+.+.|.+.+++|.+. .| +..+...|..++. .
T Consensus 111 ~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~--~~d~~~~~d~~l~~Laea~v~l~ 188 (310)
T 3mv2_B 111 AILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNA--IEDTVSGDNEMILNLAESYIKFA 188 (310)
T ss_dssp HHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CccccccchHHHHHHHHHHHHHH
Confidence 999999999999998876653 225677888889999999999999999999874 35 3566666666633 3
Q ss_pred cC--CchHHHHHHHHHhHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHC-----CC----CCCHHHHHHHHHHHH
Q 036198 390 LG--EPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNK-----GL----KLPYRKFDSYLMQLS 458 (499)
Q Consensus 390 ~~--~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-----~~----~p~~~~~~~ll~~~~ 458 (499)
.| +..+|..+|+++.+. .|+..+-..++.++.+.|++++|.+.++.+.+. .. +-++.++..++....
T Consensus 189 ~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~ 266 (310)
T 3mv2_B 189 TNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFLANQITLAL 266 (310)
T ss_dssp HTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHH
T ss_pred hCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHH
Confidence 34 899999999998765 455334445555788899999999999876643 11 235667766666666
Q ss_pred hcCCHHHHHHHHHHHHhhcChhHH
Q 036198 459 VIGDLGAIHKLSDHMRKFYNPVIA 482 (499)
Q Consensus 459 ~~g~~~~a~~~~~~m~~~~~~~~~ 482 (499)
..|+ +|.++++++.+..|..+.
T Consensus 267 ~lgk--~a~~l~~qL~~~~P~hp~ 288 (310)
T 3mv2_B 267 MQGL--DTEDLTNQLVKLDHEHAF 288 (310)
T ss_dssp HTTC--TTHHHHHHHHHTTCCCHH
T ss_pred HhCh--HHHHHHHHHHHhCCCChH
Confidence 6776 888999999998876554
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.06 E-value=4.6e-08 Score=85.83 Aligned_cols=196 Identities=12% Similarity=0.011 Sum_probs=154.5
Q ss_pred CCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHhHH
Q 036198 232 PDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYK 311 (499)
Q Consensus 232 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~ 311 (499)
.|+..+......+...|++++|+..|++..+.. .+++...+..+..++...|++++|...|++..+.. +.+...+.
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~---~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~ 80 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLT---NNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYI 80 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT---TTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcc---CCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHH
Confidence 467889999999999999999999999999986 23778888889999999999999999999999874 33567888
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-------hhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcC---hhhHH
Q 036198 312 EVLEGMCLAGKVEEAYKFLEEMGNKGYPPDI-------VTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPS---VQTYN 381 (499)
Q Consensus 312 ~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~-------~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~---~~~~~ 381 (499)
.+...|...|++++|.+.+++..+.... +. ..|..+...+...|++++|...|++..+.. |+ ...+.
T Consensus 81 ~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~ 157 (228)
T 4i17_A 81 GKSAAYRDMKNNQEYIATLTEGIKAVPG-NATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVT--SKKWKTDALY 157 (228)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSS--CHHHHHHHHH
T ss_pred HHHHHHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcC--CCcccHHHHH
Confidence 8999999999999999999998876432 34 457888888999999999999999998853 54 46777
Q ss_pred HHHHHHHhcCCchHHHHHHHHHhHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC
Q 036198 382 MLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKG 442 (499)
Q Consensus 382 ~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 442 (499)
.+..+|...| ...++.+...+ ..+...|..... ...+.+++|...+++..+..
T Consensus 158 ~l~~~~~~~~-----~~~~~~a~~~~-~~~~~~~~~~~~--~~~~~~~~A~~~~~~a~~l~ 210 (228)
T 4i17_A 158 SLGVLFYNNG-----ADVLRKATPLA-SSNKEKYASEKA--KADAAFKKAVDYLGEAVTLS 210 (228)
T ss_dssp HHHHHHHHHH-----HHHHHHHGGGT-TTCHHHHHHHHH--HHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHH-----HHHHHHHHhcc-cCCHHHHHHHHH--HHHHHHHHHHHHHHHHhhcC
Confidence 7777776544 44455555543 223444544432 24566899999999998875
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.04 E-value=1.2e-06 Score=88.86 Aligned_cols=170 Identities=11% Similarity=0.015 Sum_probs=113.5
Q ss_pred CHHhHHHHHHHHHhcCCHHHHH-HHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCC---------Cc
Q 036198 306 DVSTYKEVLEGMCLAGKVEEAY-KFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGC---------WP 375 (499)
Q Consensus 306 ~~~~~~~ll~~~~~~g~~~~a~-~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~---------~~ 375 (499)
+...|-.....+...|+.++|. ++|+..... .+.+...|...+...-+.|+++.|.++|+.+.+... .|
T Consensus 342 ~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p 420 (679)
T 4e6h_A 342 APEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDP 420 (679)
T ss_dssp CHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHST
T ss_pred CHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccC
Confidence 3344444445555677777785 888887764 334555667777777888888889888888775310 13
Q ss_pred C------------hhhHHHHHHHHHhcCCchHHHHHHHHHhHC-CCCCCHHHHHHHHHHHHhC-CCHHHHHHHHHHHHHC
Q 036198 376 S------------VQTYNMLISMYFELGEPDGAFETWHEMDKR-GCAQDVDTYCVMIDGLFDC-SKVEEACFLLEEVVNK 441 (499)
Q Consensus 376 ~------------~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-~~~p~~~~~~~li~~~~~~-g~~~~a~~~~~~m~~~ 441 (499)
+ ..+|...+....+.|+.+.|..+|....+. +. +....|...+..-.+. ++.+.|..+|+..++.
T Consensus 421 ~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~-~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~ 499 (679)
T 4e6h_A 421 TNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKL-VTPDIYLENAYIEYHISKDTKTACKVLELGLKY 499 (679)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGG-SCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH
T ss_pred cchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC-CChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 1 235777777777788888899999888765 21 1222333222222233 4588888888888876
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcC
Q 036198 442 GLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHMRKFYN 478 (499)
Q Consensus 442 ~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~ 478 (499)
.+-+...+..+++-....|+.+.|..+|++..+..+
T Consensus 500 -~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~ 535 (679)
T 4e6h_A 500 -FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKIS 535 (679)
T ss_dssp -HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSS
T ss_pred -CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcC
Confidence 333566667777777788889999999988887655
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=98.99 E-value=3.8e-08 Score=77.84 Aligned_cols=129 Identities=11% Similarity=0.148 Sum_probs=83.1
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHH
Q 036198 236 TYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLE 315 (499)
Q Consensus 236 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~ 315 (499)
.|..+...+...|++++|..+|+++.+.. +.+...+..+...+...|++++|...++++.+.+ +.+...+..+..
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~----~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 77 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD----PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGN 77 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC----CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHH
Confidence 45566667777777777777777776654 3356666666777777777777777777766553 334555666666
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 036198 316 GMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIE 370 (499)
Q Consensus 316 ~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 370 (499)
.+...|++++|.+.++.+.+... .+...+..+...+.+.|++++|...++++.+
T Consensus 78 ~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 131 (136)
T 2fo7_A 78 AYYKQGDYDEAIEYYQKALELDP-RSAEAWYNLGNAYYKQGDYDEAIEYYQKALE 131 (136)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHHccHHHHHHHHHHHHc
Confidence 66677777777777766655432 2455566666666666666666666666654
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.98 E-value=2.3e-08 Score=91.55 Aligned_cols=168 Identities=14% Similarity=0.024 Sum_probs=75.2
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCC-CHhhHHHHHHHHHHc-CCHHHHHHHHHHHHHCCCCc-C----h
Q 036198 309 TYKEVLEGMCLAGKVEEAYKFLEEMGNK----GYPP-DIVTYNCFLKVLCDN-KNGDEALRLYGRMIEVGCWP-S----V 377 (499)
Q Consensus 309 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~----~~~p-~~~~~~~li~~~~~~-g~~~~a~~~~~~m~~~~~~~-~----~ 377 (499)
+|+.+..+|.+.|++++|...+++..+. |-.. -..+++.+...|... |++++|...|++..+..... + .
T Consensus 79 ~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~ 158 (292)
T 1qqe_A 79 TYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSN 158 (292)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHH
Confidence 4444444444455555554444443321 1000 023445555555554 66666666555554321000 0 2
Q ss_pred hhHHHHHHHHHhcCCchHHHHHHHHHhHCCCCCCH------HHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCC-CC---H
Q 036198 378 QTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDV------DTYCVMIDGLFDCSKVEEACFLLEEVVNKGLK-LP---Y 447 (499)
Q Consensus 378 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~------~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~-p~---~ 447 (499)
.++..+...+.+.|++++|...|++..+....... ..|..+..++...|++++|...+++..+.... ++ .
T Consensus 159 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~ 238 (292)
T 1qqe_A 159 KCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRES 238 (292)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------H
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHH
Confidence 34555555566666666666666655543221111 13444455555566666666666655432110 00 1
Q ss_pred HHHHHHHHHHH--hcCCHHHHHHHHHHHHhh
Q 036198 448 RKFDSYLMQLS--VIGDLGAIHKLSDHMRKF 476 (499)
Q Consensus 448 ~~~~~ll~~~~--~~g~~~~a~~~~~~m~~~ 476 (499)
..+..++.+|. ..+++++|.+.++++.+.
T Consensus 239 ~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l 269 (292)
T 1qqe_A 239 NFLKSLIDAVNEGDSEQLSEHCKEFDNFMRL 269 (292)
T ss_dssp HHHHHHHHHHHTTCTTTHHHHHHHHTTSSCC
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhccCCcc
Confidence 12333344443 234455555555554443
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.97 E-value=9.6e-08 Score=87.38 Aligned_cols=169 Identities=10% Similarity=-0.051 Sum_probs=99.6
Q ss_pred HHHHHhCCChHHHHHHHHHhhcCCCCChhhHHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHhHHHHHHHHHHH
Q 036198 184 LDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQTLEEMIQMGHAPD-NFTYNTAIDTFCKARMVTEAADLFEFMRT 262 (499)
Q Consensus 184 i~~~~~~g~~~~A~~~~~~m~~~~~p~~~~~~~la~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 262 (499)
...|...|++++|.+.|.+..+ +. .+.|.+++ ..+|+.+..+|.+.|++++|+..|++..+
T Consensus 44 ~~~~~~~g~~~~A~~~~~~al~---------------~~---~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~ 105 (292)
T 1qqe_A 44 ATIYRLRKELNLAGDSFLKAAD---------------YQ---KKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQ 105 (292)
T ss_dssp HHHHHHTTCTHHHHHHHHHHHH---------------HH---HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHH---------------HH---HHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3457778888888888887643 11 12232222 46788888888888888888888887765
Q ss_pred cCCCCCCC--CHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHcCCCc-C----HHhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 036198 263 KGSTISSP--TAKTYAIMIVALVQN-DRMEECFSLLGHMINSGCLP-D----VSTYKEVLEGMCLAGKVEEAYKFLEEMG 334 (499)
Q Consensus 263 ~~~~~~~p--~~~~~~~ll~~~~~~-~~~~~a~~~~~~m~~~~~~~-~----~~~~~~ll~~~~~~g~~~~a~~~~~~m~ 334 (499)
.......+ -..+++.+...|... |++++|...|++..+..... + ..++..+...+.+.|++++|...|++..
T Consensus 106 l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 185 (292)
T 1qqe_A 106 IFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLI 185 (292)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 32100011 134566666677774 77777777777665431000 0 2345556666666666666666666666
Q ss_pred hCCCCCCHh------hHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 036198 335 NKGYPPDIV------TYNCFLKVLCDNKNGDEALRLYGRMIE 370 (499)
Q Consensus 335 ~~~~~p~~~------~~~~li~~~~~~g~~~~a~~~~~~m~~ 370 (499)
+........ .|..+..++...|++++|...|++..+
T Consensus 186 ~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 227 (292)
T 1qqe_A 186 KSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQS 227 (292)
T ss_dssp HTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGC
T ss_pred HHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 543221111 344555556666666666666666554
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=98.96 E-value=6e-08 Score=76.66 Aligned_cols=131 Identities=12% Similarity=0.167 Sum_probs=78.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcChhhHHHHHHHHHhcCCchHHHHHHHHHhHCCCCCCHHHHHHHHHHHHh
Q 036198 345 YNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFD 424 (499)
Q Consensus 345 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~ 424 (499)
|..+...+...|++++|..+++++.+.+. .+...+..+...+...|++++|...++++.+.+ +.+...+..+...+..
T Consensus 4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 81 (136)
T 2fo7_A 4 WYNLGNAYYKQGDYDEAIEYYQKALELDP-RSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYK 81 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHcCC-cchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHHH
Confidence 44555555666666666666666555331 234455556666666666666666666665442 2244556666666666
Q ss_pred CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcC
Q 036198 425 CSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHMRKFYN 478 (499)
Q Consensus 425 ~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~ 478 (499)
.|++++|.++++++.+... .+...+..+...+...|++++|.+.++++.+..+
T Consensus 82 ~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~ 134 (136)
T 2fo7_A 82 QGDYDEAIEYYQKALELDP-RSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 134 (136)
T ss_dssp TTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHST
T ss_pred hcCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHHccHHHHHHHHHHHHccCC
Confidence 7777777777766665542 2455666666777777777777777776665543
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=98.89 E-value=1.3e-07 Score=84.90 Aligned_cols=193 Identities=7% Similarity=-0.047 Sum_probs=126.5
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcC---HHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-C-CHh
Q 036198 269 SPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPD---VSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYP-P-DIV 343 (499)
Q Consensus 269 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~---~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~-p-~~~ 343 (499)
+.+...+......+.+.|++++|...|+.+.+.. +.+ ...+..+..+|.+.|++++|...|+...+.... | ...
T Consensus 12 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 90 (261)
T 3qky_A 12 HSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQ 90 (261)
T ss_dssp CSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHH
T ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHH
Confidence 4456777777778888888888888888887753 222 556777778888888888888888887775321 1 234
Q ss_pred hHHHHHHHHHH--------cCCHHHHHHHHHHHHHCCCCcCh-hhHHHHHHHHHhcCCchHHHHHHHHHhHCCCCCCHHH
Q 036198 344 TYNCFLKVLCD--------NKNGDEALRLYGRMIEVGCWPSV-QTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDT 414 (499)
Q Consensus 344 ~~~~li~~~~~--------~g~~~~a~~~~~~m~~~~~~~~~-~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~ 414 (499)
.+..+..++.. .|++++|...|+++.+.. |+. .....+.. +..+... -...
T Consensus 91 a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~a~~~--------------~~~~~~~----~~~~ 150 (261)
T 3qky_A 91 AEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY--PNHELVDDATQK--------------IRELRAK----LARK 150 (261)
T ss_dssp HHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC--TTCTTHHHHHHH--------------HHHHHHH----HHHH
T ss_pred HHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHC--cCchhHHHHHHH--------------HHHHHHH----HHHH
Confidence 56666677777 788888888888877643 332 22211111 0010000 0112
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhc----------CCHHHHHHHHHHHHhhcChhHH
Q 036198 415 YCVMIDGLFDCSKVEEACFLLEEVVNKGLKL--PYRKFDSYLMQLSVI----------GDLGAIHKLSDHMRKFYNPVIA 482 (499)
Q Consensus 415 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p--~~~~~~~ll~~~~~~----------g~~~~a~~~~~~m~~~~~~~~~ 482 (499)
+..+...|...|++++|...++++.+..... ....+..+..+|... |++++|...++++.+.+|....
T Consensus 151 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 230 (261)
T 3qky_A 151 QYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPL 230 (261)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChH
Confidence 4556677788888888888888887664221 244666777777765 7888888888888888776543
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=98.88 E-value=1.2e-07 Score=85.07 Aligned_cols=190 Identities=12% Similarity=-0.038 Sum_probs=120.0
Q ss_pred CCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC--CcCHHh
Q 036198 232 PDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGC--LPDVST 309 (499)
Q Consensus 232 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~--~~~~~~ 309 (499)
.+...+..+...+.+.|++++|+..|+.+.+.... .+.....+..+..++...|++++|...|+...+..- +.....
T Consensus 13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 91 (261)
T 3qky_A 13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRT-HEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQA 91 (261)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSC-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC-CcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHH
Confidence 36677888889999999999999999999987521 011167888999999999999999999999998631 122456
Q ss_pred HHHHHHHHHh--------cCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcChhhHH
Q 036198 310 YKEVLEGMCL--------AGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYN 381 (499)
Q Consensus 310 ~~~ll~~~~~--------~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~ 381 (499)
+..+..++.. .|++++|...|++..+.... +......+.. +..+... -...+.
T Consensus 92 ~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~a~~~--------------~~~~~~~----~~~~~~ 152 (261)
T 3qky_A 92 EYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPN-HELVDDATQK--------------IRELRAK----LARKQY 152 (261)
T ss_dssp HHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTT-CTTHHHHHHH--------------HHHHHHH----HHHHHH
T ss_pred HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcC-chhHHHHHHH--------------HHHHHHH----HHHHHH
Confidence 6777788888 99999999999998876322 2223322110 0000000 001133
Q ss_pred HHHHHHHhcCCchHHHHHHHHHhHCCCC-C-CHHHHHHHHHHHHhC----------CCHHHHHHHHHHHHHC
Q 036198 382 MLISMYFELGEPDGAFETWHEMDKRGCA-Q-DVDTYCVMIDGLFDC----------SKVEEACFLLEEVVNK 441 (499)
Q Consensus 382 ~li~~~~~~~~~~~a~~~~~~m~~~~~~-p-~~~~~~~li~~~~~~----------g~~~~a~~~~~~m~~~ 441 (499)
.+...|.+.|++++|...|+.+.+.... + ....+..+..+|... |++++|...++++.+.
T Consensus 153 ~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~ 224 (261)
T 3qky_A 153 EAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQI 224 (261)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHH
Confidence 4445555566666666666655543111 0 123444444555433 5666666666666554
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.85 E-value=2.2e-07 Score=80.29 Aligned_cols=180 Identities=12% Similarity=0.095 Sum_probs=85.5
Q ss_pred HHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHhHHHHH
Q 036198 235 FTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVL 314 (499)
Q Consensus 235 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll 314 (499)
..+......+...|++++|+..|++..+.. +-+...|... .... ...........+.
T Consensus 5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~----p~~~~~~~~~-----~~~~--------------~~~~~~~~~~~lg 61 (208)
T 3urz_A 5 DEMLQKVSAAIEAGQNGQAVSYFRQTIALN----IDRTEMYYWT-----NVDK--------------NSEISSKLATELA 61 (208)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----HHHHHHHHHH-----HSCT--------------TSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC----CCChHHHHHh-----hhcc--------------hhhhhHHHHHHHH
Confidence 334445566778888888888888887754 1123333330 0000 0000111222345
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcChhhHHHHHHHHHhcCC--
Q 036198 315 EGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGE-- 392 (499)
Q Consensus 315 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~-- 392 (499)
.+|.+.|++++|...|++..+.... +...+..+...+...|++++|...|++..+... .+..++..+..+|...|+
T Consensus 62 ~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~lg~~~~~~~~~~ 139 (208)
T 3urz_A 62 LAYKKNRNYDKAYLFYKELLQKAPN-NVDCLEACAEMQVCRGQEKDALRMYEKILQLEA-DNLAANIFLGNYYYLTAEQE 139 (208)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHHhHHH
Confidence 5555556666666666555554322 445555555556666666666666666555331 234455555555443332
Q ss_pred chHHHHHHHHHhHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHC
Q 036198 393 PDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNK 441 (499)
Q Consensus 393 ~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 441 (499)
.+.+...++.... ..|....+.....++...|++++|...|++..+.
T Consensus 140 ~~~~~~~~~~~~~--~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l 186 (208)
T 3urz_A 140 KKKLETDYKKLSS--PTKMQYARYRDGLSKLFTTRYEKARNSLQKVILR 186 (208)
T ss_dssp HHHHHHHHC---C--CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHhC--CCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 2233333333321 1111122222333344456666666666665543
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.84 E-value=4.2e-07 Score=78.72 Aligned_cols=140 Identities=11% Similarity=0.060 Sum_probs=67.5
Q ss_pred HHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcC----CHHHHHH
Q 036198 253 AADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAG----KVEEAYK 328 (499)
Q Consensus 253 a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g----~~~~a~~ 328 (499)
|++.|++..+.| +..++..+...|...+++++|...|++..+.| +...+..|-..|.. + ++++|.+
T Consensus 5 A~~~~~~aa~~g------~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~ 74 (212)
T 3rjv_A 5 PGSQYQQQAEAG------DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQ 74 (212)
T ss_dssp TTHHHHHHHHTT------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHH
T ss_pred HHHHHHHHHHCC------CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHH
Confidence 445555555544 44555555555555556666666665555543 33444444444444 3 5555555
Q ss_pred HHHHHHhCCCCCCHhhHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCC-cChhhHHHHHHHHHh----cCCchHHHHH
Q 036198 329 FLEEMGNKGYPPDIVTYNCFLKVLCD----NKNGDEALRLYGRMIEVGCW-PSVQTYNMLISMYFE----LGEPDGAFET 399 (499)
Q Consensus 329 ~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~~~-~~~~~~~~li~~~~~----~~~~~~a~~~ 399 (499)
.|+...+.| +...+..|...|.. .+++++|...|++..+.|.. .+...+..|-..|.. .++.++|...
T Consensus 75 ~~~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~ 151 (212)
T 3rjv_A 75 LAEKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEY 151 (212)
T ss_dssp HHHHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHH
T ss_pred HHHHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHH
Confidence 555554443 33444444444443 44555555555555444311 013344444444444 3444444444
Q ss_pred HHHHhH
Q 036198 400 WHEMDK 405 (499)
Q Consensus 400 ~~~m~~ 405 (499)
|++..+
T Consensus 152 ~~~A~~ 157 (212)
T 3rjv_A 152 FKGSSS 157 (212)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444444
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=98.83 E-value=3.6e-06 Score=76.59 Aligned_cols=236 Identities=8% Similarity=0.016 Sum_probs=179.9
Q ss_pred HHHHHhcCCH-hHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHcCCCcCHHhHHHHHHHH
Q 036198 241 IDTFCKARMV-TEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQND--RMEECFSLLGHMINSGCLPDVSTYKEVLEGM 317 (499)
Q Consensus 241 i~~~~~~g~~-~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~--~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~ 317 (499)
+.+..+.|.. ++|+++++.+.... +-+..+|+.--..+...+ +++++++.++.+.... +-+..+|+.--..+
T Consensus 39 ~~a~~~~~e~s~~aL~~t~~~L~~n----P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL 113 (306)
T 3dra_A 39 LLALMKAEEYSERALHITELGINEL----ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLII 113 (306)
T ss_dssp HHHHHHTTCCSHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHH
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHC----cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHH
Confidence 3344455554 68999999999976 446778888888888888 9999999999999874 33445555433333
Q ss_pred ----Hhc---CCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHH--HHHHHHHHHHHCCCCcChhhHHHHHHHHH
Q 036198 318 ----CLA---GKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGD--EALRLYGRMIEVGCWPSVQTYNMLISMYF 388 (499)
Q Consensus 318 ----~~~---g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~--~a~~~~~~m~~~~~~~~~~~~~~li~~~~ 388 (499)
... +++++++++++.+.+...+ +..+|+.-.-.+.+.|.++ ++++.++.+.+... -|...|+.-.....
T Consensus 114 ~~~~~~l~~~~~~~~EL~~~~~~l~~~pk-ny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~-~N~sAW~~R~~ll~ 191 (306)
T 3dra_A 114 GQIMELNNNDFDPYREFDILEAMLSSDPK-NHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDL-KNNSAWSHRFFLLF 191 (306)
T ss_dssp HHHHHHTTTCCCTHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHH
T ss_pred HHHHHhccccCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCC-CCHHHHHHHHHHHH
Confidence 444 7899999999999987654 7888888888888889888 99999999998764 46778877666666
Q ss_pred hcCC------chHHHHHHHHHhHCCCCCCHHHHHHHHHHHHhCCCHH-HHHHHHHHHHHCC--CCCCHHHHHHHHHHHHh
Q 036198 389 ELGE------PDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVE-EACFLLEEVVNKG--LKLPYRKFDSYLMQLSV 459 (499)
Q Consensus 389 ~~~~------~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~-~a~~~~~~m~~~~--~~p~~~~~~~ll~~~~~ 459 (499)
+.+. ++++++.++.+.... +-|...|+-+-..+.+.|+.. ++..+..++.+.+ -..+...+..+..+|.+
T Consensus 192 ~l~~~~~~~~~~eEl~~~~~aI~~~-p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~ 270 (306)
T 3dra_A 192 SKKHLATDNTIDEELNYVKDKIVKC-PQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQ 270 (306)
T ss_dssp SSGGGCCHHHHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHH
T ss_pred hccccchhhhHHHHHHHHHHHHHhC-CCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHc
Confidence 6666 888999999888764 347888888888888888744 4556666665433 13477888999999999
Q ss_pred cCCHHHHHHHHHHHHhhcChhHHHH
Q 036198 460 IGDLGAIHKLSDHMRKFYNPVIARR 484 (499)
Q Consensus 460 ~g~~~~a~~~~~~m~~~~~~~~~~~ 484 (499)
.|+.++|.++++.+.+.+.|.-.++
T Consensus 271 ~~~~~~A~~~~~~l~~~~Dpir~~y 295 (306)
T 3dra_A 271 QKKYNESRTVYDLLKSKYNPIRSNF 295 (306)
T ss_dssp TTCHHHHHHHHHHHHHTTCGGGHHH
T ss_pred cCCHHHHHHHHHHHHhccChHHHHH
Confidence 9999999999999998666654443
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=98.83 E-value=1.8e-07 Score=84.47 Aligned_cols=60 Identities=12% Similarity=0.064 Sum_probs=26.7
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCC-CcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 036198 276 AIMIVALVQNDRMEECFSLLGHMINSGC-LPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGN 335 (499)
Q Consensus 276 ~~ll~~~~~~~~~~~a~~~~~~m~~~~~-~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~ 335 (499)
..+..++...|++++|++++.+....+- .-+...+..++..+.+.|+.+.|.+.++.|.+
T Consensus 104 ~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~ 164 (310)
T 3mv2_B 104 YLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN 164 (310)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 3444444444455555444444433321 11333444444444555555555555544443
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.81 E-value=1.2e-06 Score=75.87 Aligned_cols=186 Identities=10% Similarity=-0.045 Sum_probs=149.9
Q ss_pred HHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcC----CHHHHHHH
Q 036198 289 EECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNK----NGDEALRL 364 (499)
Q Consensus 289 ~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g----~~~~a~~~ 364 (499)
.+|++.|.+..+.| +...+..+-..|...+++++|.+.|++..+.| +...+..+-..|.. + ++++|...
T Consensus 3 ~eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~ 75 (212)
T 3rjv_A 3 TEPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQL 75 (212)
T ss_dssp -CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHH
T ss_pred chHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHH
Confidence 35777888888775 67788888899999999999999999998876 56777788888877 6 89999999
Q ss_pred HHHHHHCCCCcChhhHHHHHHHHHh----cCCchHHHHHHHHHhHCCCC-CCHHHHHHHHHHHHh----CCCHHHHHHHH
Q 036198 365 YGRMIEVGCWPSVQTYNMLISMYFE----LGEPDGAFETWHEMDKRGCA-QDVDTYCVMIDGLFD----CSKVEEACFLL 435 (499)
Q Consensus 365 ~~~m~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~~~~-p~~~~~~~li~~~~~----~g~~~~a~~~~ 435 (499)
|++..+.| +...+..|-..|.. .+++++|.+.|++..+.|.. .+...+..|-..|.. .++.++|..+|
T Consensus 76 ~~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~ 152 (212)
T 3rjv_A 76 AEKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYF 152 (212)
T ss_dssp HHHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHH
T ss_pred HHHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHH
Confidence 99998865 56677778888877 78999999999999887532 126778888888887 88999999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhc-C-----CHHHHHHHHHHHHhhcChhHHHHHH
Q 036198 436 EEVVNKGLKLPYRKFDSYLMQLSVI-G-----DLGAIHKLSDHMRKFYNPVIARRLA 486 (499)
Q Consensus 436 ~~m~~~~~~p~~~~~~~ll~~~~~~-g-----~~~~a~~~~~~m~~~~~~~~~~~~~ 486 (499)
++..+.+ .+...+..+...|... | +.++|.+.+++..+...+.-...+.
T Consensus 153 ~~A~~~~--~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~~~A~~~l~ 207 (212)
T 3rjv_A 153 KGSSSLS--RTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGFDTGCEEFD 207 (212)
T ss_dssp HHHHHTS--CTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHcC--CCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 9998872 3455677777777653 3 8999999999999987776555444
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.79 E-value=1.3e-07 Score=97.25 Aligned_cols=172 Identities=9% Similarity=-0.092 Sum_probs=84.3
Q ss_pred HHcCCHHHHHHHHHHHH--------HcCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHH
Q 036198 283 VQNDRMEECFSLLGHMI--------NSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCD 354 (499)
Q Consensus 283 ~~~~~~~~a~~~~~~m~--------~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~ 354 (499)
...|++++|.+.+++.. +.. +.+...+..+..++...|++++|.+.|++..+.+.. +...|..+..++..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERVGW-RWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcc-hHHHHHHHHHHHHH
Confidence 44555555555555554 221 223344555555555555555555555555543221 34455555555555
Q ss_pred cCCHHHHHHHHHHHHHCCCCcChhhHHHHHHHHHhcCCchHHHHHHHHHhHCCCCCCHHHHHHHHHHHHhCCCHHHHHHH
Q 036198 355 NKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFL 434 (499)
Q Consensus 355 ~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~ 434 (499)
.|++++|...|++..+... -+...+..+..+|.+.|++++ .+.|++..+.. +-+...|..+..++.+.|++++|...
T Consensus 480 ~g~~~~A~~~~~~al~l~P-~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTFP-GELAPKLALAATAELAGNTDE-HKFYQTVWSTN-DGVISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp HTCHHHHHHHHHHHHHHST-TCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-CchHHHHHHHHHHHHHcCCHHHHHHH
Confidence 5555555555555554321 133445555555555555555 55555554432 11344555555555555555555555
Q ss_pred HHHHHHCCCCCC-HHHHHHHHHHHHhcC
Q 036198 435 LEEVVNKGLKLP-YRKFDSYLMQLSVIG 461 (499)
Q Consensus 435 ~~~m~~~~~~p~-~~~~~~ll~~~~~~g 461 (499)
+++..+.+ |+ ...+..+..++...|
T Consensus 557 ~~~al~l~--P~~~~a~~~~~~~~~~~~ 582 (681)
T 2pzi_A 557 LDEVPPTS--RHFTTARLTSAVTLLSGR 582 (681)
T ss_dssp HHTSCTTS--TTHHHHHHHHHHHTC---
T ss_pred HHhhcccC--cccHHHHHHHHHHHHccC
Confidence 55554432 22 334444444444433
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=98.78 E-value=8.7e-07 Score=77.48 Aligned_cols=186 Identities=10% Similarity=-0.003 Sum_probs=120.8
Q ss_pred CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCH----H
Q 036198 233 DNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDV----S 308 (499)
Q Consensus 233 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~----~ 308 (499)
+...+..+...+.+.|++++|+..|+++.+.... .+.....+..+..++.+.|++++|...|+++.+.. |+. .
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~--P~~~~~~~ 79 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPF-GPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN--PTHPNIDY 79 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCTTHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC--cCCCcHHH
Confidence 4455667778889999999999999999886521 11124678888899999999999999999998763 332 1
Q ss_pred hHHHHHHHHHh------------------cCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 036198 309 TYKEVLEGMCL------------------AGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIE 370 (499)
Q Consensus 309 ~~~~ll~~~~~------------------~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 370 (499)
.+..+..++.. .|++++|...|+.+.+.... +...+.+.... ..+...+.
T Consensus 80 a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~-~~~a~~a~~~l----------~~~~~~~~- 147 (225)
T 2yhc_A 80 VMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPN-SQYTTDATKRL----------VFLKDRLA- 147 (225)
T ss_dssp HHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTT-CTTHHHHHHHH----------HHHHHHHH-
T ss_pred HHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcC-ChhHHHHHHHH----------HHHHHHHH-
Confidence 34334444443 45677777777777665311 22222111100 00000000
Q ss_pred CCCCcChhhHHHHHHHHHhcCCchHHHHHHHHHhHCCCCCC----HHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC
Q 036198 371 VGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQD----VDTYCVMIDGLFDCSKVEEACFLLEEVVNKG 442 (499)
Q Consensus 371 ~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 442 (499)
.....+...|.+.|++++|...|+.+.+. .|+ ...+..+..+|.+.|+.++|.+.++.+...+
T Consensus 148 -------~~~~~~a~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~ 214 (225)
T 2yhc_A 148 -------KYEYSVAEYYTERGAWVAVVNRVEGMLRD--YPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANS 214 (225)
T ss_dssp -------HHHHHHHHHHHHHTCHHHHHHHHHHHHHH--STTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCC
T ss_pred -------HHHHHHHHHHHHcCcHHHHHHHHHHHHHH--CcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC
Confidence 01134566778888899998888888765 233 2467778888888899999988888887765
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.78 E-value=4.7e-07 Score=78.14 Aligned_cols=188 Identities=7% Similarity=-0.016 Sum_probs=111.3
Q ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHhhcCCCCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHH
Q 036198 177 INALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADL 256 (499)
Q Consensus 177 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~~~~~la~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~ 256 (499)
...+-.....+...|++++|...|++..+..|.+...|... -..............+..+|.+.|++++|+..
T Consensus 4 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~-------~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~ 76 (208)
T 3urz_A 4 VDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWT-------NVDKNSEISSKLATELALAYKKNRNYDKAYLF 76 (208)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHH-------HSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHh-------hhcchhhhhHHHHHHHHHHHHHCCCHHHHHHH
Confidence 34445556678899999999999998765211111111000 00000000111122377778888888888888
Q ss_pred HHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCC--HHHHHHHHHHHH
Q 036198 257 FEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGK--VEEAYKFLEEMG 334 (499)
Q Consensus 257 ~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~--~~~a~~~~~~m~ 334 (499)
|++..+.. +-+...+..+...+...|++++|...|++..+.. +.+...+..+...|...|+ .+.+...+....
T Consensus 77 ~~~al~~~----p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~ 151 (208)
T 3urz_A 77 YKELLQKA----PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYYLTAEQEKKKLETDYKKLS 151 (208)
T ss_dssp HHHHHHHC----TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHC----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHh
Confidence 88888765 3467778888888888888888888888887764 3456667777766655543 334444444443
Q ss_pred hCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcChhhH
Q 036198 335 NKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTY 380 (499)
Q Consensus 335 ~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~ 380 (499)
. ..|....+.....++...|++++|...|++..+. .|+....
T Consensus 152 ~--~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l--~P~~~~~ 193 (208)
T 3urz_A 152 S--PTKMQYARYRDGLSKLFTTRYEKARNSLQKVILR--FPSTEAQ 193 (208)
T ss_dssp C--CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTT--SCCHHHH
T ss_pred C--CCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCHHHH
Confidence 2 1222223333444555667777888888777763 3554433
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=98.76 E-value=4.9e-07 Score=79.10 Aligned_cols=190 Identities=6% Similarity=-0.057 Sum_probs=124.0
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-c-CHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH--hhHH
Q 036198 271 TAKTYAIMIVALVQNDRMEECFSLLGHMINSGCL-P-DVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDI--VTYN 346 (499)
Q Consensus 271 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~-~-~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~--~~~~ 346 (499)
+...+..+...+...|++++|...|+++.+.... | ....+..+..++.+.|++++|...|+.+.+....... ..+.
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 4456666777888899999999999998875311 1 1356777888899999999999999998775432111 1344
Q ss_pred HHHHHHHH------------------cCCHHHHHHHHHHHHHCCCCcChh-hHHHHHHHHHhcCCchHHHHHHHHHhHCC
Q 036198 347 CFLKVLCD------------------NKNGDEALRLYGRMIEVGCWPSVQ-TYNMLISMYFELGEPDGAFETWHEMDKRG 407 (499)
Q Consensus 347 ~li~~~~~------------------~g~~~~a~~~~~~m~~~~~~~~~~-~~~~li~~~~~~~~~~~a~~~~~~m~~~~ 407 (499)
.+..++.. .|++++|...|+++.+.. |+.. .+.+.... ..+...+.
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--P~~~~a~~a~~~l----------~~~~~~~~--- 147 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGY--PNSQYTTDATKRL----------VFLKDRLA--- 147 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTC--TTCTTHHHHHHHH----------HHHHHHHH---
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHC--cCChhHHHHHHHH----------HHHHHHHH---
Confidence 44444443 356666666666666542 3322 22111100 00000100
Q ss_pred CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcChh
Q 036198 408 CAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLP--YRKFDSYLMQLSVIGDLGAIHKLSDHMRKFYNPV 480 (499)
Q Consensus 408 ~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~ 480 (499)
.....+...|.+.|++++|...++++.+.....+ ...+..+..+|.+.|+.++|.+.++.+...++..
T Consensus 148 -----~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~ 217 (225)
T 2yhc_A 148 -----KYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNT 217 (225)
T ss_dssp -----HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCC
T ss_pred -----HHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCc
Confidence 0123456678899999999999999998753211 2568889999999999999999999998877654
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=98.75 E-value=5.1e-07 Score=82.29 Aligned_cols=167 Identities=13% Similarity=0.027 Sum_probs=122.2
Q ss_pred CCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHhH
Q 036198 231 APDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTY 310 (499)
Q Consensus 231 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~ 310 (499)
+.+...+..+...+...|++++|+..|++..+.. +-+...+..+...+...|++++|...+++.... .|+....
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~----P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~ 187 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLS----NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ--DQDTRYQ 187 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT----TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG--GCSHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC----CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh--hcchHHH
Confidence 3355667777788888889999999888888875 446778888888888888898888888888765 3444333
Q ss_pred HHH-HHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC-cChhhHHHHHHHHH
Q 036198 311 KEV-LEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCW-PSVQTYNMLISMYF 388 (499)
Q Consensus 311 ~~l-l~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~-~~~~~~~~li~~~~ 388 (499)
... ...+...++.++|.+.+++...... .+...+..+...+...|++++|...|.++.+.... .+...+..+...+.
T Consensus 188 ~~~~~~~l~~~~~~~~a~~~l~~al~~~P-~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~ 266 (287)
T 3qou_A 188 GLVAQIELLXQAADTPEIQQLQQQVAENP-EDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILA 266 (287)
T ss_dssp HHHHHHHHHHHHTSCHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcccCccHHHHHHHHhcCC-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHH
Confidence 222 2235666777778888887776643 36677888888888888888888888888875422 12567788888888
Q ss_pred hcCCchHHHHHHHHHh
Q 036198 389 ELGEPDGAFETWHEMD 404 (499)
Q Consensus 389 ~~~~~~~a~~~~~~m~ 404 (499)
..|+.++|...+++..
T Consensus 267 ~~g~~~~a~~~~r~al 282 (287)
T 3qou_A 267 ALGTGDALASXYRRQL 282 (287)
T ss_dssp HHCTTCHHHHHHHHHH
T ss_pred HcCCCCcHHHHHHHHH
Confidence 8888888887777643
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.75 E-value=2.2e-06 Score=78.27 Aligned_cols=127 Identities=14% Similarity=0.129 Sum_probs=56.3
Q ss_pred HHHHHhcCCHhHHHHHHHHHHHcCCCCCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-cC----HHhHH
Q 036198 241 IDTFCKARMVTEAADLFEFMRTKGSTISSPTA----KTYAIMIVALVQNDRMEECFSLLGHMINSGCL-PD----VSTYK 311 (499)
Q Consensus 241 i~~~~~~g~~~~a~~~~~~m~~~~~~~~~p~~----~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~-~~----~~~~~ 311 (499)
+..+...|++++|..++++..+... ..|+. ..+..+...+...+++++|...|++..+.... ++ ..+++
T Consensus 82 i~~~~~~~~y~~a~~~~~~~l~~~~--~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~ 159 (293)
T 3u3w_A 82 VIMLCKQKRYKEIYNKVWNELKKEE--YHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIEN 159 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTCC--CCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHhcccc--CChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHH
Confidence 4455556666666666666555321 11221 11222333444445555555555555542111 11 11344
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhC-----CCCC-CHhhHHHHHHHHHHcCCHHHHHHHHHHHH
Q 036198 312 EVLEGMCLAGKVEEAYKFLEEMGNK-----GYPP-DIVTYNCFLKVLCDNKNGDEALRLYGRMI 369 (499)
Q Consensus 312 ~ll~~~~~~g~~~~a~~~~~~m~~~-----~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 369 (499)
.+...|...|++++|.+.+++..+. +..+ ...+|..+...|.+.|++++|...+++..
T Consensus 160 ~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al 223 (293)
T 3u3w_A 160 AIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAI 223 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 5555555555555555555544420 1111 11234444444555555555555544443
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.72 E-value=1.7e-07 Score=96.40 Aligned_cols=173 Identities=13% Similarity=0.012 Sum_probs=143.1
Q ss_pred HhcCCHhHHHHHHHHHH--------HcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHH
Q 036198 245 CKARMVTEAADLFEFMR--------TKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEG 316 (499)
Q Consensus 245 ~~~g~~~~a~~~~~~m~--------~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~ 316 (499)
...|++++|++.+++.. +.. +.+...+..+...+...|++++|.+.|++..+.. +.+...|..+..+
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~----p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~ 476 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF----SESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVA 476 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC----TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc----ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHH
Confidence 77899999999999998 432 4567889999999999999999999999999864 4467888899999
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcChhhHHHHHHHHHhcCCchHH
Q 036198 317 MCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGA 396 (499)
Q Consensus 317 ~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a 396 (499)
+...|++++|.+.|++..+.... +...|..+..++.+.|++++ .+.|++..+.+. .+...|..+..++.+.|++++|
T Consensus 477 ~~~~g~~~~A~~~~~~al~l~P~-~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P-~~~~a~~~lg~~~~~~g~~~~A 553 (681)
T 2pzi_A 477 ELLTGDYDSATKHFTEVLDTFPG-ELAPKLALAATAELAGNTDE-HKFYQTVWSTND-GVISAAFGLARARSAEGDRVGA 553 (681)
T ss_dssp HHHHTCHHHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCC-chHHHHHHHHHHHHHcCCHHHH
Confidence 99999999999999999887533 67788899999999999999 999999988652 3567889999999999999999
Q ss_pred HHHHHHHhHCCCCCC-HHHHHHHHHHHHhCCC
Q 036198 397 FETWHEMDKRGCAQD-VDTYCVMIDGLFDCSK 427 (499)
Q Consensus 397 ~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~ 427 (499)
.+.|++..+. .|+ ...+..+..++...++
T Consensus 554 ~~~~~~al~l--~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 554 VRTLDEVPPT--SRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHHHHTSCTT--STTHHHHHHHHHHHTC----
T ss_pred HHHHHhhccc--CcccHHHHHHHHHHHHccCC
Confidence 9999998775 454 4566677777766554
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.71 E-value=3.7e-07 Score=92.05 Aligned_cols=155 Identities=8% Similarity=-0.038 Sum_probs=114.2
Q ss_pred cCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHH
Q 036198 285 NDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRL 364 (499)
Q Consensus 285 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~ 364 (499)
.|++++|.+.|++..+.. +.+...+..+...+...|++++|.+.+++..+.... +...+..+...|...|++++|.+.
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPG-HPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTT-CHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHH
Confidence 478899999999887663 345778888899999999999999999998887433 677888899999999999999999
Q ss_pred HHHHHHCCCCcChhhHHHHHHHHHhcCCchHHHHHHHHHhHCCCCCCHHHHHHHHHHHHhC---CCHHHHHHHHHHHHHC
Q 036198 365 YGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDC---SKVEEACFLLEEVVNK 441 (499)
Q Consensus 365 ~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~---g~~~~a~~~~~~m~~~ 441 (499)
+++..+.. +.+...+..+..+|...|++++|.+.+++..+.. +.+...+..+...+... |+.++|.+.+++..+.
T Consensus 80 ~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 80 LQQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 99988764 2356788889999999999999999999987753 23567888888888888 9999999999999887
Q ss_pred CC
Q 036198 442 GL 443 (499)
Q Consensus 442 ~~ 443 (499)
+.
T Consensus 158 ~p 159 (568)
T 2vsy_A 158 GV 159 (568)
T ss_dssp TC
T ss_pred CC
Confidence 63
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.70 E-value=2.7e-07 Score=77.26 Aligned_cols=161 Identities=11% Similarity=0.043 Sum_probs=98.2
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHH
Q 036198 237 YNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEG 316 (499)
Q Consensus 237 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~ 316 (499)
+......+...|++++|+..|++..+.. +.+...+..+...+...|++++|...++...+.. |+...+..+...
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~----P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~~ 82 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDEL----QSRGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLIAKL 82 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHH----HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC----CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHHHH
Confidence 4455666777788888888887766653 3456777777777778888888888777776542 333322221111
Q ss_pred -HHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCc-ChhhHHHHHHHHHhcCCch
Q 036198 317 -MCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWP-SVQTYNMLISMYFELGEPD 394 (499)
Q Consensus 317 -~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~-~~~~~~~li~~~~~~~~~~ 394 (499)
+...++...|...+++..+.... +...+..+...+...|++++|...|+++.+....+ +...+..+...+...|+.+
T Consensus 83 ~~~~~~~~~~a~~~~~~al~~~P~-~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~ 161 (176)
T 2r5s_A 83 ELHQQAAESPELKRLEQELAANPD-NFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGN 161 (176)
T ss_dssp HHHHHHTSCHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSC
T ss_pred HHHhhcccchHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCC
Confidence 11212223356666666554322 45666667777777777777777777776654222 2446666777777777777
Q ss_pred HHHHHHHHHh
Q 036198 395 GAFETWHEMD 404 (499)
Q Consensus 395 ~a~~~~~~m~ 404 (499)
+|...|++..
T Consensus 162 ~A~~~y~~al 171 (176)
T 2r5s_A 162 AIASKYRRQL 171 (176)
T ss_dssp HHHHHHHHHH
T ss_pred cHHHHHHHHH
Confidence 7777766543
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.68 E-value=3.5e-07 Score=76.58 Aligned_cols=158 Identities=11% Similarity=0.064 Sum_probs=87.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcChhhHHHHHHH-HHhc
Q 036198 312 EVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISM-YFEL 390 (499)
Q Consensus 312 ~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~-~~~~ 390 (499)
.....+...|++++|...++...+... -+...+..+...+...|++++|...+++..+.. |+...+..+... +...
T Consensus 11 ~~a~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~~~~ 87 (176)
T 2r5s_A 11 KQVSELLQQGEHAQALNVIQTLSDELQ-SRGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLIAKLELHQQ 87 (176)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTSCHHHH-TSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHHHHHHHhh
Confidence 344455556666666666655444321 134555555566666666666666666554432 222222211111 1122
Q ss_pred CCchHHHHHHHHHhHCCCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHH
Q 036198 391 GEPDGAFETWHEMDKRGCAQ-DVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKL-PYRKFDSYLMQLSVIGDLGAIHK 468 (499)
Q Consensus 391 ~~~~~a~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~ 468 (499)
+...+|...++...+. .| +...+..+...+...|++++|...++++.+....+ +...+..+..++...|+.++|..
T Consensus 88 ~~~~~a~~~~~~al~~--~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~ 165 (176)
T 2r5s_A 88 AAESPELKRLEQELAA--NPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIAS 165 (176)
T ss_dssp HTSCHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHH
T ss_pred cccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHH
Confidence 2333456666666553 23 45666677777777777777777777777665332 24566677777777777777777
Q ss_pred HHHHHH
Q 036198 469 LSDHMR 474 (499)
Q Consensus 469 ~~~~m~ 474 (499)
.+++..
T Consensus 166 ~y~~al 171 (176)
T 2r5s_A 166 KYRRQL 171 (176)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 766543
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.66 E-value=5.2e-06 Score=75.80 Aligned_cols=167 Identities=11% Similarity=0.070 Sum_probs=121.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCC-CCCH----hhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC-cC----hhhHH
Q 036198 312 EVLEGMCLAGKVEEAYKFLEEMGNKGY-PPDI----VTYNCFLKVLCDNKNGDEALRLYGRMIEVGCW-PS----VQTYN 381 (499)
Q Consensus 312 ~ll~~~~~~g~~~~a~~~~~~m~~~~~-~p~~----~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~-~~----~~~~~ 381 (499)
..+..+...|++++|.+++++..+... .|+. ..+..+...+...|++++|...+++..+.... ++ ..+++
T Consensus 80 ~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~ 159 (293)
T 3u3w_A 80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIEN 159 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHH
Confidence 346678888999999999988876422 2221 13334666666778999999999998874322 22 23688
Q ss_pred HHHHHHHhcCCchHHHHHHHHHhH----C-CCCCC-HHHHHHHHHHHHhCCCHHHHHHHHHHHHHC----CCCCC-HHHH
Q 036198 382 MLISMYFELGEPDGAFETWHEMDK----R-GCAQD-VDTYCVMIDGLFDCSKVEEACFLLEEVVNK----GLKLP-YRKF 450 (499)
Q Consensus 382 ~li~~~~~~~~~~~a~~~~~~m~~----~-~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~p~-~~~~ 450 (499)
.+..+|...|++++|...+++..+ . +..+. ..+|..+...|.+.|++++|...+++..+. +..+. ..+|
T Consensus 160 ~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~ 239 (293)
T 3u3w_A 160 AIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLY 239 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 888899999999999999988763 1 11222 237778888999999999999999887642 32222 6688
Q ss_pred HHHHHHHHhcCC-HHHHHHHHHHHHhhcC
Q 036198 451 DSYLMQLSVIGD-LGAIHKLSDHMRKFYN 478 (499)
Q Consensus 451 ~~ll~~~~~~g~-~~~a~~~~~~m~~~~~ 478 (499)
..+..+|.+.|+ +++|.+.+++..+.+.
T Consensus 240 ~~lg~~~~~~g~~~~~A~~~~~~Al~i~~ 268 (293)
T 3u3w_A 240 YQRGECLRKLEYEEAEIEDAYKKASFFFD 268 (293)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHHHHH
Confidence 888999999994 6999999988876543
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=98.66 E-value=1e-06 Score=80.26 Aligned_cols=165 Identities=9% Similarity=0.013 Sum_probs=106.0
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcChhhHH-HHH
Q 036198 306 DVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYN-MLI 384 (499)
Q Consensus 306 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~-~li 384 (499)
+...+..+...+...|++++|...|++..+.... +...+..+...+.+.|++++|...++++.... |+..... ...
T Consensus 116 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~~~~~ 192 (287)
T 3qou_A 116 EEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQ-NGEIGLLLAETLIALNRSEDAEAVLXTIPLQD--QDTRYQGLVAQ 192 (287)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTS-CHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGG--CSHHHHHHHHH
T ss_pred chhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCc-chhHHHHHHHHHHHCCCHHHHHHHHHhCchhh--cchHHHHHHHH
Confidence 3445555666677777777777777776665322 45666677777777777777777777765542 4433222 222
Q ss_pred HHHHhcCCchHHHHHHHHHhHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhcCCH
Q 036198 385 SMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLK-LPYRKFDSYLMQLSVIGDL 463 (499)
Q Consensus 385 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~-p~~~~~~~ll~~~~~~g~~ 463 (499)
..+...++.++|...+++..+.. +.+...+..+...+...|++++|...+.++...... .+...+..+...+...|+.
T Consensus 193 ~~l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~ 271 (287)
T 3qou_A 193 IELLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTG 271 (287)
T ss_dssp HHHHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTT
T ss_pred HHHHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCC
Confidence 23555666777777777766542 235666777777777778888888887777766422 1255677777777777877
Q ss_pred HHHHHHHHHHH
Q 036198 464 GAIHKLSDHMR 474 (499)
Q Consensus 464 ~~a~~~~~~m~ 474 (499)
++|...+++..
T Consensus 272 ~~a~~~~r~al 282 (287)
T 3qou_A 272 DALASXYRRQL 282 (287)
T ss_dssp CHHHHHHHHHH
T ss_pred CcHHHHHHHHH
Confidence 77777666543
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=98.65 E-value=2.7e-05 Score=70.87 Aligned_cols=223 Identities=11% Similarity=0.008 Sum_probs=173.5
Q ss_pred HhCCC-hHHHHHHHHHhhcCCCCChhhHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcC--CHhHHHHHHHHHHHc
Q 036198 188 CKCGL-VDYAETICKRVKNKVKPNANTYNILGMQTLEEMIQMGHAP-DNFTYNTAIDTFCKAR--MVTEAADLFEFMRTK 263 (499)
Q Consensus 188 ~~~g~-~~~A~~~~~~m~~~~~p~~~~~~~la~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g--~~~~a~~~~~~m~~~ 263 (499)
.+.|. .++|+++++.+.. +.| +...|+.--.++...| ++++++++++.+...
T Consensus 43 ~~~~e~s~~aL~~t~~~L~------------------------~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~ 98 (306)
T 3dra_A 43 MKAEEYSERALHITELGIN------------------------ELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALD 98 (306)
T ss_dssp HHTTCCSHHHHHHHHHHHH------------------------HCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHH
T ss_pred HHcCCCCHHHHHHHHHHHH------------------------HCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHH
Confidence 34444 4688888888765 223 4566788888888888 999999999999987
Q ss_pred CCCCCCCCHHHHHHHHHHH----HHc---CCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHH--HHHHHHHHHH
Q 036198 264 GSTISSPTAKTYAIMIVAL----VQN---DRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVE--EAYKFLEEMG 334 (499)
Q Consensus 264 ~~~~~~p~~~~~~~ll~~~----~~~---~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~--~a~~~~~~m~ 334 (499)
. +-+..+|+.--..+ ... +++++++.+++.+.+.. +-+..+|+--.-.+.+.|.++ ++++.++.+.
T Consensus 99 n----Pk~y~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i 173 (306)
T 3dra_A 99 N----EKNYQIWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVI 173 (306)
T ss_dssp C----TTCCHHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred C----cccHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHH
Confidence 6 34556666655555 455 78999999999999874 557778877777778888888 9999999999
Q ss_pred hCCCCCCHhhHHHHHHHHHHcCC------HHHHHHHHHHHHHCCCCcChhhHHHHHHHHHhcCCchH-HHHHHHHHhHCC
Q 036198 335 NKGYPPDIVTYNCFLKVLCDNKN------GDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDG-AFETWHEMDKRG 407 (499)
Q Consensus 335 ~~~~~p~~~~~~~li~~~~~~g~------~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~-a~~~~~~m~~~~ 407 (499)
+.+.. |...|+.-...+.+.+. ++++++.+++++.... -|...|+.+-..+.+.|+... +..+...+.+.+
T Consensus 174 ~~d~~-N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p-~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~ 251 (306)
T 3dra_A 174 DTDLK-NNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKCP-QNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLE 251 (306)
T ss_dssp HHCTT-CHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHCS-SCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGG
T ss_pred HhCCC-CHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhCC-CCccHHHHHHHHHHhcCCChHHHHHHHHHHHhcc
Confidence 88665 77888877777777776 8899999999988653 578888888888888887444 566777765532
Q ss_pred --CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHC
Q 036198 408 --CAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNK 441 (499)
Q Consensus 408 --~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 441 (499)
-..+...+..+...|.+.|+.++|.++++.+.+.
T Consensus 252 ~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~~ 287 (306)
T 3dra_A 252 KDQVTSSFALETLAKIYTQQKKYNESRTVYDLLKSK 287 (306)
T ss_dssp GTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhc
Confidence 1347788999999999999999999999999864
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.65 E-value=8.4e-07 Score=89.42 Aligned_cols=134 Identities=11% Similarity=-0.091 Sum_probs=77.4
Q ss_pred CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHhHHH
Q 036198 233 DNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKE 312 (499)
Q Consensus 233 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ 312 (499)
+...+..+...+.+.|++++|.+.|++..+.. +.+...+..+...|...|++++|.+.+++..+.. +.+...+..
T Consensus 22 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~----p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~ 96 (568)
T 2vsy_A 22 DFVAWLMLADAELGMGDTTAGEMAVQRGLALH----PGHPEAVARLGRVRWTQQRHAEAAVLLQQASDAA-PEHPGIALW 96 (568)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHH
Confidence 35555666666666666666666666665543 2345556666666666666666666666665543 234455555
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHc---CCHHHHHHHHHHHHHCC
Q 036198 313 VLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDN---KNGDEALRLYGRMIEVG 372 (499)
Q Consensus 313 ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~---g~~~~a~~~~~~m~~~~ 372 (499)
+..+|.+.|++++|.+.+++..+... .+...+..+...+... |+.++|.+.+++..+.+
T Consensus 97 la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~ 158 (568)
T 2vsy_A 97 LGHALEDAGQAEAAAAAYTRAHQLLP-EEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQG 158 (568)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcC
Confidence 66666666666666666666555432 1345555556666666 66666666666655543
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.65 E-value=9.8e-07 Score=81.26 Aligned_cols=219 Identities=13% Similarity=0.056 Sum_probs=147.8
Q ss_pred cCCHhHHHHHHHHHHHcCCC---CCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc----CCCc-CHHhHHHHH
Q 036198 247 ARMVTEAADLFEFMRTKGST---ISSPT----AKTYAIMIVALVQNDRMEECFSLLGHMINS----GCLP-DVSTYKEVL 314 (499)
Q Consensus 247 ~g~~~~a~~~~~~m~~~~~~---~~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~----~~~~-~~~~~~~ll 314 (499)
.|++++|.+++++..+.... ...++ ...|......|...|++++|...|.+..+. +-.. -..+|+.+.
T Consensus 4 ~~~~~eA~~~~~~a~k~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg 83 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYLKTSFMKWKPDYDSAASEYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAG 83 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCSSSCSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHccccccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 45667777777766542110 01233 235666677888899999999999887653 1111 135788888
Q ss_pred HHHHhcCCHHHHHHHHHHHHhC----CCCC-CHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCC----CCc-ChhhHHHHH
Q 036198 315 EGMCLAGKVEEAYKFLEEMGNK----GYPP-DIVTYNCFLKVLCDNKNGDEALRLYGRMIEVG----CWP-SVQTYNMLI 384 (499)
Q Consensus 315 ~~~~~~g~~~~a~~~~~~m~~~----~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~----~~~-~~~~~~~li 384 (499)
..|...|++++|...|++..+. |-.. -..++..+...|.. |++++|...|++..+.. ... ...++..+.
T Consensus 84 ~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg 162 (307)
T 2ifu_A 84 MMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKAS 162 (307)
T ss_dssp HHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHH
Confidence 8999999999999999876543 2111 13567778888888 99999999999877531 111 145788889
Q ss_pred HHHHhcCCchHHHHHHHHHhHC----CCCCC-HHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCC-C---HHHHHHHHH
Q 036198 385 SMYFELGEPDGAFETWHEMDKR----GCAQD-VDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKL-P---YRKFDSYLM 455 (499)
Q Consensus 385 ~~~~~~~~~~~a~~~~~~m~~~----~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p-~---~~~~~~ll~ 455 (499)
..|...|++++|...|++..+. +..+. ...+..+..++...|++++|...+++.. ..... + ......++.
T Consensus 163 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~~~~~~e~~~l~~l~~ 241 (307)
T 2ifu_A 163 RLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-SIPGFSGSEDCAALEDLLQ 241 (307)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TSTTSTTSHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-CCCCCCCCHHHHHHHHHHH
Confidence 9999999999999999987653 22121 2256666777778899999999999988 43111 1 123445556
Q ss_pred HHHhcCCHHHHHH
Q 036198 456 QLSVIGDLGAIHK 468 (499)
Q Consensus 456 ~~~~~g~~~~a~~ 468 (499)
++ ..|+.+.+.+
T Consensus 242 ~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 242 AY-DEQDEEQLLR 253 (307)
T ss_dssp HH-HTTCHHHHHH
T ss_pred HH-HhcCHHHHHH
Confidence 55 5788776665
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=98.63 E-value=0.00015 Score=71.20 Aligned_cols=332 Identities=9% Similarity=0.014 Sum_probs=201.9
Q ss_pred CChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhcchhhhh-hHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHHhhhc
Q 036198 93 FEEKIAFRFFMWAGHQDNYAHEPLAYNLMIDILSSTKYKAK-QFRLVCSMLDYMKRNNKVFVPVDVLLMILKQYTEKIKV 171 (499)
Q Consensus 93 ~~~~~a~~~f~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~-~~~~a~~~~~~m~~~~~~~~~~~~~~~~l~~~~~~~~~ 171 (499)
.....+..+|...... .|+...|...+.-.. +.+ ..+.+..+|+.....-
T Consensus 28 ~~~e~~~~iferal~~---~ps~~LW~~Y~~f~~----~~~~~~~~i~~~fe~al~~v---------------------- 78 (493)
T 2uy1_A 28 KDYRSLESLFGRCLKK---SYNLDLWMLYIEYVR----KVSQKKFKLYEVYEFTLGQF---------------------- 78 (493)
T ss_dssp TCHHHHHHHHHHHSTT---CCCHHHHHHHHHHHH----HHC----CTHHHHHHHHHHS----------------------
T ss_pred CCHHHHHHHHHHHhcc---CCCHHHHHHHHHHHH----HhCchHHHHHHHHHHHHHHc----------------------
Confidence 4567788899887653 469999999888877 444 2345556666655431
Q ss_pred CC-CCCHHHHHHHHHHHH----hCCChHHHHHHHHHhhcCCCCCh--hhHHHH-------------------------HH
Q 036198 172 KT-QPEINALNLLLDALC----KCGLVDYAETICKRVKNKVKPNA--NTYNIL-------------------------GM 219 (499)
Q Consensus 172 ~~-~~~~~~~~~li~~~~----~~g~~~~A~~~~~~m~~~~~p~~--~~~~~l-------------------------a~ 219 (499)
|. +.+...|...+..+. ..|+.+.+..+|++... +|+.. ..|... |.
T Consensus 79 g~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~-~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar 157 (493)
T 2uy1_A 79 ENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQ-TPMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSF 157 (493)
T ss_dssp TTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHT-SCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHh-ChhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHH
Confidence 11 234556666665543 24567778888888766 22221 111111 12
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcC--C-----HhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 036198 220 QTLEEMIQMGHAPDNFTYNTAIDTFCKAR--M-----VTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECF 292 (499)
Q Consensus 220 ~~~~~m~~~g~~p~~~~~~~li~~~~~~g--~-----~~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~ 292 (499)
.+++.+...-...+...|...+..-...+ - .+.+..+|+++.... +.+...|...+..+.+.|+.++|.
T Consensus 158 ~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~----p~~~~lW~~ya~~~~~~~~~~~ar 233 (493)
T 2uy1_A 158 QRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSF----YYAEEVYFFYSEYLIGIGQKEKAK 233 (493)
T ss_dssp HHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT----TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcC----CCCHHHHHHHHHHHHHcCCHHHHH
Confidence 22222221100013345555555433221 1 345778999988864 456888988999999999999999
Q ss_pred HHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhC---------CC---CCCHhhHHHHHHHHHHcCCHHH
Q 036198 293 SLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNK---------GY---PPDIVTYNCFLKVLCDNKNGDE 360 (499)
Q Consensus 293 ~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~---------~~---~p~~~~~~~li~~~~~~g~~~~ 360 (499)
.+|++.... +.+...+. .|+...+.++. ++.+.+. +. ......|...+....+.++.+.
T Consensus 234 ~i~erAi~~--P~~~~l~~----~y~~~~e~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~ 304 (493)
T 2uy1_A 234 KVVERGIEM--SDGMFLSL----YYGLVMDEEAV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLEL 304 (493)
T ss_dssp HHHHHHHHH--CCSSHHHH----HHHHHTTCTHH---HHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHH
T ss_pred HHHHHHHhC--CCcHHHHH----HHHhhcchhHH---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHH
Confidence 999999987 33332222 22222111111 2222211 00 0112456666777777889999
Q ss_pred HHHHHHHHHHCCCCcChhhHH--HHHHHHHhcCCchHHHHHHHHHhHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 036198 361 ALRLYGRMIEVGCWPSVQTYN--MLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEV 438 (499)
Q Consensus 361 a~~~~~~m~~~~~~~~~~~~~--~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m 438 (499)
|..+|+.. ... ..+...|. +.+.... .++.+.|..+|+...+.- +-+...+...++.....|+.+.|..+|+.+
T Consensus 305 AR~i~~~A-~~~-~~~~~v~i~~A~lE~~~-~~d~~~ar~ife~al~~~-~~~~~~~~~yid~e~~~~~~~~aR~l~er~ 380 (493)
T 2uy1_A 305 FRKLFIEL-GNE-GVGPHVFIYCAFIEYYA-TGSRATPYNIFSSGLLKH-PDSTLLKEEFFLFLLRIGDEENARALFKRL 380 (493)
T ss_dssp HHHHHHHH-TTS-CCCHHHHHHHHHHHHHH-HCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHS
T ss_pred HHHHHHHh-hCC-CCChHHHHHHHHHHHHH-CCChHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99999999 321 12344443 2233222 236999999999987752 223455666777777889999999999987
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 036198 439 VNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHMRKF 476 (499)
Q Consensus 439 ~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~ 476 (499)
. -....|...+.--...|+.+.+.++++++.+.
T Consensus 381 ~-----k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~~ 413 (493)
T 2uy1_A 381 E-----KTSRMWDSMIEYEFMVGSMELFRELVDQKMDA 413 (493)
T ss_dssp C-----CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred H-----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 2 25778888887777889999999998888763
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.61 E-value=6.1e-06 Score=71.10 Aligned_cols=129 Identities=11% Similarity=-0.098 Sum_probs=94.7
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHhhcCCCCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHH
Q 036198 179 ALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFE 258 (499)
Q Consensus 179 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~~~~~la~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~ 258 (499)
.+..+...+...|++++|.+.|++.. .|+...+..+..++.+.|++++|++.|+
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a~--------------------------~~~~~~~~~lg~~~~~~g~~~~A~~~~~ 61 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAVQ--------------------------DPHSRICFNIGCMYTILKNMTEAEKAFT 61 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSS--------------------------SCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHc--------------------------CCChHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 45556667778888888888877652 3466778888888888888888888888
Q ss_pred HHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC--------------c-CHHhHHHHHHHHHhcCCH
Q 036198 259 FMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCL--------------P-DVSTYKEVLEGMCLAGKV 323 (499)
Q Consensus 259 ~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~--------------~-~~~~~~~ll~~~~~~g~~ 323 (499)
+..+.. +.+...|..+..++...|++++|...|+...+..-. | ....+..+..++...|++
T Consensus 62 ~al~~~----~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 137 (213)
T 1hh8_A 62 RSINRD----KHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEW 137 (213)
T ss_dssp HHHHHC----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCH
T ss_pred HHHHhC----ccchHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCH
Confidence 887764 346777888888888888888888888888764211 1 125666677777788888
Q ss_pred HHHHHHHHHHHhCC
Q 036198 324 EEAYKFLEEMGNKG 337 (499)
Q Consensus 324 ~~a~~~~~~m~~~~ 337 (499)
++|.+.|+...+..
T Consensus 138 ~~A~~~~~~al~~~ 151 (213)
T 1hh8_A 138 KKAEEQLALATSMK 151 (213)
T ss_dssp HHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHcC
Confidence 88888887777654
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=98.61 E-value=2.2e-07 Score=75.55 Aligned_cols=83 Identities=16% Similarity=0.060 Sum_probs=38.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcChhhHHHHHHHHHhcC
Q 036198 312 EVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELG 391 (499)
Q Consensus 312 ~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~ 391 (499)
.+...|.+.|++++|.+.|++..+.... +..+|..+..+|.+.|++++|...|++..+... -+...+..+...|.+.|
T Consensus 36 ~la~~y~~~~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~~ 113 (150)
T 4ga2_A 36 YFAKLYYEAKEYDLAKKYICTYINVQER-DPKAHRFLGLLYELEENTDKAVECYRRSVELNP-TQKDLVLKIAELLCKND 113 (150)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcC
Confidence 3444444555555555555444443221 344444455555555555555555555444321 12344444455555555
Q ss_pred CchHH
Q 036198 392 EPDGA 396 (499)
Q Consensus 392 ~~~~a 396 (499)
+.++|
T Consensus 114 ~~~~a 118 (150)
T 4ga2_A 114 VTDGR 118 (150)
T ss_dssp SSSSH
T ss_pred ChHHH
Confidence 54443
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=98.60 E-value=2.4e-07 Score=75.26 Aligned_cols=83 Identities=6% Similarity=0.007 Sum_probs=38.9
Q ss_pred HHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHH
Q 036198 238 NTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGM 317 (499)
Q Consensus 238 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~ 317 (499)
..+...|.+.|++++|++.|++..+.. +-+..+|..+..+|...|++++|...|+...+.. +-+...+..+...|
T Consensus 35 ~~la~~y~~~~~~~~A~~~~~~al~~~----p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~ 109 (150)
T 4ga2_A 35 FYFAKLYYEAKEYDLAKKYICTYINVQ----ERDPKAHRFLGLLYELEENTDKAVECYRRSVELN-PTQKDLVLKIAELL 109 (150)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhC----CCCHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 344445555555555555555554443 2234445555555555555555555555544432 22334444444444
Q ss_pred HhcCCHHH
Q 036198 318 CLAGKVEE 325 (499)
Q Consensus 318 ~~~g~~~~ 325 (499)
.+.|+.++
T Consensus 110 ~~~~~~~~ 117 (150)
T 4ga2_A 110 CKNDVTDG 117 (150)
T ss_dssp HHHCSSSS
T ss_pred HHcCChHH
Confidence 44444433
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.59 E-value=5.7e-06 Score=71.29 Aligned_cols=130 Identities=12% Similarity=-0.061 Sum_probs=105.5
Q ss_pred HHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHhHHHHH
Q 036198 235 FTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVL 314 (499)
Q Consensus 235 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll 314 (499)
..+..+...+...|++++|++.|++. ..|+..+|..+...+...|++++|...|++..+.. +.+...+..+.
T Consensus 7 ~~~~~~g~~~~~~~~~~~A~~~~~~a-------~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg 78 (213)
T 1hh8_A 7 ISLWNEGVLAADKKDWKGALDAFSAV-------QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRG 78 (213)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTS-------SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHH-------cCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHH
Confidence 34556777888899999999999876 24578889999999999999999999999988764 45677888888
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCC---------------CHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 036198 315 EGMCLAGKVEEAYKFLEEMGNKGYPP---------------DIVTYNCFLKVLCDNKNGDEALRLYGRMIEVG 372 (499)
Q Consensus 315 ~~~~~~g~~~~a~~~~~~m~~~~~~p---------------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 372 (499)
.++...|++++|.+.|+...+..... ....+..+..++.+.|++++|...|+...+..
T Consensus 79 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 151 (213)
T 1hh8_A 79 MLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 151 (213)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcC
Confidence 99999999999999999988753221 12677788888889999999999999888754
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.55 E-value=1.3e-05 Score=73.16 Aligned_cols=165 Identities=13% Similarity=0.097 Sum_probs=79.4
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC---CcC--
Q 036198 236 TYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTA----KTYAIMIVALVQNDRMEECFSLLGHMINSGC---LPD-- 306 (499)
Q Consensus 236 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~p~~----~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~---~~~-- 306 (499)
.+...+..+...|++++|.+.++...+.... .++. ..+..+...+...|++++|...+++..+... .+.
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 154 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEY--HPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQN 154 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCC--CHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccC--ChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHH
Confidence 3444555666666777776666666554310 0100 1122333444555566666666665543211 111
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHh---C-CCCC--CHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCC----CCc-
Q 036198 307 VSTYKEVLEGMCLAGKVEEAYKFLEEMGN---K-GYPP--DIVTYNCFLKVLCDNKNGDEALRLYGRMIEVG----CWP- 375 (499)
Q Consensus 307 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~---~-~~~p--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~----~~~- 375 (499)
..+|+.+...|...|++++|...+++..+ . +..+ ...++..+...|.+.|++++|...+++..+.. ...
T Consensus 155 ~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~ 234 (293)
T 2qfc_A 155 LYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMAL 234 (293)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSS
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHH
Confidence 23455555556666666666666655441 1 1001 11355555555556666666666555544321 000
Q ss_pred ChhhHHHHHHHHHhcCCchHH-HHHHHH
Q 036198 376 SVQTYNMLISMYFELGEPDGA-FETWHE 402 (499)
Q Consensus 376 ~~~~~~~li~~~~~~~~~~~a-~~~~~~ 402 (499)
-..+|..+..+|.+.|+.++| ...+++
T Consensus 235 ~~~~~~~lg~~y~~~g~~~~Ai~~~~~~ 262 (293)
T 2qfc_A 235 IGQLYYQRGECLRKLEYEEAEIEDAYKK 262 (293)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCcHHHHHHHHHH
Confidence 134455555555555555555 444444
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.55 E-value=4.2e-05 Score=70.42 Aligned_cols=231 Identities=9% Similarity=-0.007 Sum_probs=167.5
Q ss_pred HhcCCHhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhc-C-
Q 036198 245 CKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQND-RMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLA-G- 321 (499)
Q Consensus 245 ~~~g~~~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~-~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~-g- 321 (499)
.+.+..++|+++++.+.... +-+..+|+.--..+...| .++++++.++.+.... +-+..+|+.--..+.+. +
T Consensus 65 ~~~e~se~AL~lt~~~L~~n----P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~l~~~ 139 (349)
T 3q7a_A 65 AKEEKSERALELTEIIVRMN----PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDRISPQ 139 (349)
T ss_dssp HTTCCSHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHCCS
T ss_pred HhCCCCHHHHHHHHHHHHhC----chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhcCC
Confidence 34445578999999999876 446778888888888888 5999999999999774 45667777766666665 6
Q ss_pred CHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHH--------HHHHHHHHHHHCCCCcChhhHHHHHHHHHhcCC-
Q 036198 322 KVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGD--------EALRLYGRMIEVGCWPSVQTYNMLISMYFELGE- 392 (499)
Q Consensus 322 ~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~--------~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~- 392 (499)
++++++++++.+.+...+ +..+|+.-.-.+.+.|.++ ++++.++++.+... -|...|+.....+.+.+.
T Consensus 140 ~~~~EL~~~~k~L~~dpk-Ny~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp-~N~SAW~~R~~lL~~l~~~ 217 (349)
T 3q7a_A 140 DPVSEIEYIHGSLLPDPK-NYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDG-RNNSAWGWRWYLRVSRPGA 217 (349)
T ss_dssp CCHHHHHHHHHHTSSCTT-CHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHTTSTTC
T ss_pred ChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhcccc
Confidence 889999999999987654 7777777666666666666 89999999988653 477788887777777775
Q ss_pred ------chHHHHHHHHHhHCCCCCCHHHHHHHHHHHHhCCCH--------------------HHHHHHHHHHHHCC----
Q 036198 393 ------PDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKV--------------------EEACFLLEEVVNKG---- 442 (499)
Q Consensus 393 ------~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~--------------------~~a~~~~~~m~~~~---- 442 (499)
++++++.+++..... +-|...|+-+-..+.+.|+. .+..+...++...+
T Consensus 218 ~~~~~~~~eELe~~~~aI~~~-P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (349)
T 3q7a_A 218 ETSSRSLQDELIYILKSIHLI-PHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPED 296 (349)
T ss_dssp CCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSS
T ss_pred ccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccc
Confidence 578888888877653 33777777766666665543 33444444443322
Q ss_pred -CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcChhHHH
Q 036198 443 -LKLPYRKFDSYLMQLSVIGDLGAIHKLSDHMRKFYNPVIAR 483 (499)
Q Consensus 443 -~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~ 483 (499)
-.++...+.-+.+.|...|+.++|.++++.+.+.+.|.-.+
T Consensus 297 ~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~~dpir~~ 338 (349)
T 3q7a_A 297 TPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSEYDQMRAG 338 (349)
T ss_dssp CCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHH
T ss_pred cCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhChHHHH
Confidence 13577888899999999999999999999998877775433
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.54 E-value=4.3e-06 Score=76.95 Aligned_cols=203 Identities=10% Similarity=-0.041 Sum_probs=121.9
Q ss_pred hhhhHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHHhhhcCCCCC----HHHHHHHHHHHHhCCChHHHHHHHHHhhcC
Q 036198 131 KAKQFRLVCSMLDYMKRNNKVFVPVDVLLMILKQYTEKIKVKTQPE----INALNLLLDALCKCGLVDYAETICKRVKNK 206 (499)
Q Consensus 131 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 206 (499)
..|++++|.+++++..+...... .+..++ ...|+.....|...|++++|.+.|.+..+
T Consensus 3 ~~~~~~eA~~~~~~a~k~~~~~~-----------------~~~~~~~~~A~~~~~~a~~~~~~~g~~~~A~~~~~~al~- 64 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYLKTSF-----------------MKWKPDYDSAASEYAKAAVAFKNAKQLEQAKDAYLQEAE- 64 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHHCCCS-----------------SSCSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-
T ss_pred ccchHHHHHHHHHHHHHHccccc-----------------cCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-
Confidence 45778888888887655321000 001122 22566667788888999999888887643
Q ss_pred CCCChhhHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCCCC--HHHHHHHHHHHH
Q 036198 207 VKPNANTYNILGMQTLEEMIQMGHAP-DNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPT--AKTYAIMIVALV 283 (499)
Q Consensus 207 ~~p~~~~~~~la~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~p~--~~~~~~ll~~~~ 283 (499)
+. .+.|-.+ -..+|+.+..+|.+.|++++|+..|++..+.....-.+. ..+++.+...|.
T Consensus 65 --------------~~---~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~ 127 (307)
T 2ifu_A 65 --------------AH---ANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLME 127 (307)
T ss_dssp --------------HH---HHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHT
T ss_pred --------------HH---HHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 11 1122111 245778888888888999999988887765321001121 356667777777
Q ss_pred HcCCHHHHHHHHHHHHHcCCC---c--CHHhHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCCC-HhhHHHHHHHHH
Q 036198 284 QNDRMEECFSLLGHMINSGCL---P--DVSTYKEVLEGMCLAGKVEEAYKFLEEMGNK----GYPPD-IVTYNCFLKVLC 353 (499)
Q Consensus 284 ~~~~~~~a~~~~~~m~~~~~~---~--~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~----~~~p~-~~~~~~li~~~~ 353 (499)
. |++++|...|++..+.... + ...++..+...|.+.|++++|.+.|++..+. +..+. ...+..+...+.
T Consensus 128 ~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~ 206 (307)
T 2ifu_A 128 P-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQL 206 (307)
T ss_dssp T-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred c-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHH
Confidence 7 8888888888776643100 0 1345666677777777777777777766542 11111 124455555566
Q ss_pred HcCCHHHHHHHHHHHH
Q 036198 354 DNKNGDEALRLYGRMI 369 (499)
Q Consensus 354 ~~g~~~~a~~~~~~m~ 369 (499)
..|++++|...|++..
T Consensus 207 ~~g~~~~A~~~~~~al 222 (307)
T 2ifu_A 207 HRADYVAAQKCVRESY 222 (307)
T ss_dssp HTTCHHHHHHHHHHHT
T ss_pred HcCCHHHHHHHHHHHh
Confidence 6677777777777666
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.52 E-value=9e-06 Score=74.16 Aligned_cols=176 Identities=10% Similarity=-0.077 Sum_probs=127.3
Q ss_pred HHHHHHHHHHHhCCChHHHHHHHHHhhcCCCCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHH
Q 036198 178 NALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLF 257 (499)
Q Consensus 178 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~~~~~la~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~ 257 (499)
..+...+..+...|++++|.+.+.+..+..+...... .....+..+...+...|++++|+..+
T Consensus 76 ~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~A~~~~ 138 (293)
T 2qfc_A 76 KQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQ-----------------QFLQWQYYVAAYVLKKVDYEYCILEL 138 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHH-----------------HHHHHHHHHHHHHHTSSCHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHH-----------------HHHHHHHHHHHHHhcCCCHHHHHHHH
Confidence 3556677888999999999999987665321111100 01223445667788899999999999
Q ss_pred HHHHHcCCCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCCcC-----HHhHHHHHHHHHhcCCHHHHHHH
Q 036198 258 EFMRTKGSTISSPT--AKTYAIMIVALVQNDRMEECFSLLGHMINS-GCLPD-----VSTYKEVLEGMCLAGKVEEAYKF 329 (499)
Q Consensus 258 ~~m~~~~~~~~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~-~~~~~-----~~~~~~ll~~~~~~g~~~~a~~~ 329 (499)
++..+.......+. ..+|+.+...|...|++++|...|++..+. ...|+ ..++..+...|...|++++|.+.
T Consensus 139 ~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~ 218 (293)
T 2qfc_A 139 KKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQ 218 (293)
T ss_dssp HHHHTTCCCSSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHhcCCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHH
Confidence 99886542211222 558899999999999999999999998732 01122 25788899999999999999999
Q ss_pred HHHHHhC----CCCC-CHhhHHHHHHHHHHcCCHHHH-HHHHHHHHH
Q 036198 330 LEEMGNK----GYPP-DIVTYNCFLKVLCDNKNGDEA-LRLYGRMIE 370 (499)
Q Consensus 330 ~~~m~~~----~~~p-~~~~~~~li~~~~~~g~~~~a-~~~~~~m~~ 370 (499)
+++..+. +... -..+|..+...|.+.|++++| ...+++...
T Consensus 219 ~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 219 VNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 9987543 1111 156788899999999999999 777877653
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.51 E-value=6.2e-06 Score=67.69 Aligned_cols=130 Identities=12% Similarity=0.012 Sum_probs=87.7
Q ss_pred HHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHhHHHH
Q 036198 234 NFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEV 313 (499)
Q Consensus 234 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l 313 (499)
...+..+...+...|++++|...|++..+.. +.+..++..+...+...|++++|...+++..+.. +.+...+..+
T Consensus 13 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~----~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~ 87 (166)
T 1a17_A 13 AEELKTQANDYFKAKDYENAIKFYSQAIELN----PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRR 87 (166)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhC----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHH
Confidence 3456667777778888888888888877764 3456777777777788888888888887777653 3456667777
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHH--HHHHHHHHcCCHHHHHHHHHHHH
Q 036198 314 LEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYN--CFLKVLCDNKNGDEALRLYGRMI 369 (499)
Q Consensus 314 l~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~--~li~~~~~~g~~~~a~~~~~~m~ 369 (499)
..++...|++++|.+.+++..+.... +...+. .....+...|++++|...+....
T Consensus 88 a~~~~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 144 (166)
T 1a17_A 88 AASNMALGKFRAALRDYETVVKVKPH-DKDAKMKYQECNKIVKQKAFERAIAGDEHKR 144 (166)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence 77777777777777777776665322 333332 23333556677777777766543
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.50 E-value=6.4e-06 Score=63.68 Aligned_cols=98 Identities=9% Similarity=0.112 Sum_probs=58.0
Q ss_pred HHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHhHHHH
Q 036198 234 NFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEV 313 (499)
Q Consensus 234 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l 313 (499)
...+..+...+...|++++|.+.|+++.+.. +.+..++..+...+...|++++|...++++.+.. +.+..++..+
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~----~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l 83 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD----PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNL 83 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC----cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHH
Confidence 3455566666666666666666666666553 2345556666666666666666666666665542 2344555555
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhC
Q 036198 314 LEGMCLAGKVEEAYKFLEEMGNK 336 (499)
Q Consensus 314 l~~~~~~g~~~~a~~~~~~m~~~ 336 (499)
...+...|++++|.+.++++.+.
T Consensus 84 a~~~~~~~~~~~A~~~~~~~~~~ 106 (125)
T 1na0_A 84 GNAYYKQGDYDEAIEYYQKALEL 106 (125)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHh
Confidence 55666666666666666655543
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.43 E-value=9.5e-06 Score=63.43 Aligned_cols=97 Identities=9% Similarity=0.003 Sum_probs=64.7
Q ss_pred HHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHhHHHHH
Q 036198 235 FTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVL 314 (499)
Q Consensus 235 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll 314 (499)
..+......|.+.|++++|++.|++..+.. +.+..+|..+..++.+.|++++|...|++..+.. +.+...|..+.
T Consensus 14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~~~----p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg 88 (126)
T 4gco_A 14 QEEKNKGNEYFKKGDYPTAMRHYNEAVKRD----PENAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYIRKA 88 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHHHHH
Confidence 455666677777777777777777776654 3456667777777777777777777777766653 33455666666
Q ss_pred HHHHhcCCHHHHHHHHHHHHhC
Q 036198 315 EGMCLAGKVEEAYKFLEEMGNK 336 (499)
Q Consensus 315 ~~~~~~g~~~~a~~~~~~m~~~ 336 (499)
.++...|++++|.+.|+...+.
T Consensus 89 ~~~~~~~~~~~A~~~~~~al~l 110 (126)
T 4gco_A 89 ACLVAMREWSKAQRAYEDALQV 110 (126)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHH
Confidence 6667777777777777666654
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.43 E-value=2.8e-06 Score=72.49 Aligned_cols=157 Identities=10% Similarity=-0.111 Sum_probs=75.4
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCC-cChhhHHHHHHHHHhcCCc
Q 036198 319 LAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEV----GCW-PSVQTYNMLISMYFELGEP 393 (499)
Q Consensus 319 ~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~-~~~~~~~~li~~~~~~~~~ 393 (499)
..|++++|.++++.+... ......++..+...+...|++++|...+++..+. +.. ....++..+...|...|++
T Consensus 4 ~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 82 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAH-PATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNW 82 (203)
T ss_dssp ---CHHHHHHHHHHHHTS-TTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred ccccHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCH
Confidence 345555555533333221 1123344555555555555555555555554431 111 1233455555556666666
Q ss_pred hHHHHHHHHHhHC----CCCC--CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHC----CCC-CCHHHHHHHHHHHHhcCC
Q 036198 394 DGAFETWHEMDKR----GCAQ--DVDTYCVMIDGLFDCSKVEEACFLLEEVVNK----GLK-LPYRKFDSYLMQLSVIGD 462 (499)
Q Consensus 394 ~~a~~~~~~m~~~----~~~p--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~-p~~~~~~~ll~~~~~~g~ 462 (499)
++|.+.+++..+. +-.| ....+..+...+...|++++|...+++..+. +.. .-..++..+..++...|+
T Consensus 83 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~ 162 (203)
T 3gw4_A 83 DAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKN 162 (203)
T ss_dssp HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcC
Confidence 6666665554332 1011 1233455555566666666666666655422 110 012234555566666677
Q ss_pred HHHHHHHHHHHHhh
Q 036198 463 LGAIHKLSDHMRKF 476 (499)
Q Consensus 463 ~~~a~~~~~~m~~~ 476 (499)
+++|.+.+++..+.
T Consensus 163 ~~~A~~~~~~al~~ 176 (203)
T 3gw4_A 163 LLEAQQHWLRARDI 176 (203)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 77776666666554
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.43 E-value=3.6e-06 Score=71.86 Aligned_cols=155 Identities=12% Similarity=0.012 Sum_probs=84.2
Q ss_pred HhcCCHhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc----CCC-cCHHhHHHHHHHHHh
Q 036198 245 CKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINS----GCL-PDVSTYKEVLEGMCL 319 (499)
Q Consensus 245 ~~~g~~~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~----~~~-~~~~~~~~ll~~~~~ 319 (499)
...|++++|.+.++.+... ......++..+...+...|++++|...+++..+. +.. ....++..+...+..
T Consensus 3 ~~~g~~~~A~~~~~~~~~~----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~ 78 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLAH----PATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERM 78 (203)
T ss_dssp ----CHHHHHHHHHHHHTS----TTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred cccccHHHHHHHHHHhcCC----hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHH
Confidence 4567778888755544332 2234667777777777788888888777776652 111 123445556666677
Q ss_pred cCCHHHHHHHHHHHHhC----CCCC--CHhhHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCC-cChhhHHHHHHHHH
Q 036198 320 AGKVEEAYKFLEEMGNK----GYPP--DIVTYNCFLKVLCDNKNGDEALRLYGRMIEV----GCW-PSVQTYNMLISMYF 388 (499)
Q Consensus 320 ~g~~~~a~~~~~~m~~~----~~~p--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~-~~~~~~~~li~~~~ 388 (499)
.|++++|.+.+++..+. +-.| ....+..+...+...|++++|...+++..+. +.. .-..++..+...+.
T Consensus 79 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~ 158 (203)
T 3gw4_A 79 AGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQ 158 (203)
T ss_dssp TTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHH
Confidence 77777777766654432 1111 1234555556666666666666666665431 110 01123345555555
Q ss_pred hcCCchHHHHHHHHH
Q 036198 389 ELGEPDGAFETWHEM 403 (499)
Q Consensus 389 ~~~~~~~a~~~~~~m 403 (499)
..|++++|.+.+++.
T Consensus 159 ~~g~~~~A~~~~~~a 173 (203)
T 3gw4_A 159 QEKNLLEAQQHWLRA 173 (203)
T ss_dssp HTTCHHHHHHHHHHH
T ss_pred HCcCHHHHHHHHHHH
Confidence 556666655555544
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.43 E-value=9.6e-06 Score=63.25 Aligned_cols=118 Identities=8% Similarity=-0.061 Sum_probs=65.3
Q ss_pred HHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHhHHHH
Q 036198 234 NFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEV 313 (499)
Q Consensus 234 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l 313 (499)
...+..+...+...|++++|...|++..... +.+...+..+...+...|++++|...++...+.. +.+...+..+
T Consensus 12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~----~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~ 86 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHFYGKAIELN----PANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRM 86 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHcC----CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHH
Confidence 4455556666666666666666666666543 2345556666666666666666666666665542 2234455555
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCC
Q 036198 314 LEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKN 357 (499)
Q Consensus 314 l~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 357 (499)
...+...|++++|.+.++...+... .+...+..+..++.+.|+
T Consensus 87 ~~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 87 GLALSSLNKHVEAVAYYKKALELDP-DNETYKSNLKIAELKLRE 129 (131)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCc-cchHHHHHHHHHHHHHhc
Confidence 5556666666666666655554421 134444444444444443
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.43 E-value=9.9e-06 Score=66.43 Aligned_cols=132 Identities=12% Similarity=0.007 Sum_probs=89.6
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcChhhHHHHHHHHHhcCCchHHHHHHHHHhHCCCCCCHHHHHHHHHHH
Q 036198 343 VTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGL 422 (499)
Q Consensus 343 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~ 422 (499)
..+..+...+...|++++|...|++..+.. +.+..++..+..++...|++++|.+.+++..+.. +.+...+..+..++
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~ 91 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHH
Confidence 345566666777777777777777776643 2345667777777777788888888777776642 23566777777778
Q ss_pred HhCCCHHHHHHHHHHHHHCCCCCCHHHHHH--HHHHHHhcCCHHHHHHHHHHHHhhc
Q 036198 423 FDCSKVEEACFLLEEVVNKGLKLPYRKFDS--YLMQLSVIGDLGAIHKLSDHMRKFY 477 (499)
Q Consensus 423 ~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~--ll~~~~~~g~~~~a~~~~~~m~~~~ 477 (499)
...|++++|...+++..+.... +...+.. ....+...|++++|.+.+....+.+
T Consensus 92 ~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~ 147 (166)
T 1a17_A 92 MALGKFRAALRDYETVVKVKPH-DKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVV 147 (166)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHh
Confidence 8888888888888887766432 4444433 3334667788888888887766543
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.40 E-value=8.7e-06 Score=63.85 Aligned_cols=116 Identities=6% Similarity=-0.024 Sum_probs=70.8
Q ss_pred CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHhHHH
Q 036198 233 DNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKE 312 (499)
Q Consensus 233 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ 312 (499)
+...+..+...+.+.|++++|...|++..+.. +.+...+..+...+...|++++|...+++..+.. +.+...+..
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~----~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~ 89 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRN----PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTR 89 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC----TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC----CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHH
Confidence 45566667777777777777777777776653 3356666666667777777777777777666553 234555666
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHH
Q 036198 313 VLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCD 354 (499)
Q Consensus 313 ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~ 354 (499)
+..++...|++++|.+.|++..+.... +...+..+...+.+
T Consensus 90 la~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~ 130 (133)
T 2lni_A 90 KAAALEAMKDYTKAMDVYQKALDLDSS-CKEAADGYQRCMMA 130 (133)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCGG-GTHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHhCCC-chHHHHHHHHHHHH
Confidence 666666666666666666665554211 23344444444433
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.38 E-value=4.5e-06 Score=67.56 Aligned_cols=98 Identities=10% Similarity=-0.007 Sum_probs=66.2
Q ss_pred HHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHhHHHH
Q 036198 234 NFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEV 313 (499)
Q Consensus 234 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l 313 (499)
...+..+...+.+.|++++|+..|++..... +.+...|..+..+|...|++++|...|++..+.. +.+...|..+
T Consensus 36 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~----P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~-P~~~~~~~~l 110 (151)
T 3gyz_A 36 MDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD----FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG-KNDYTPVFHT 110 (151)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SSCCHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-CCCcHHHHHH
Confidence 4456666667777777777777777777664 3456667777777777777777777777776653 3345566666
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhC
Q 036198 314 LEGMCLAGKVEEAYKFLEEMGNK 336 (499)
Q Consensus 314 l~~~~~~g~~~~a~~~~~~m~~~ 336 (499)
..+|...|++++|...|+...+.
T Consensus 111 g~~~~~lg~~~eA~~~~~~al~l 133 (151)
T 3gyz_A 111 GQCQLRLKAPLKAKECFELVIQH 133 (151)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh
Confidence 67777777777777777766654
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.37 E-value=2e-05 Score=60.80 Aligned_cols=98 Identities=11% Similarity=0.175 Sum_probs=64.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHH
Q 036198 272 AKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKV 351 (499)
Q Consensus 272 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~ 351 (499)
...+..+...+...|++++|.+.++++.+.. +.+...+..+...+...|++++|...++.+.+... .+..++..+...
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~ 86 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-NNAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC-ccHHHHHHHHHH
Confidence 4566666777777777777777777776553 33455666666777777777777777777665432 245566666666
Q ss_pred HHHcCCHHHHHHHHHHHHHC
Q 036198 352 LCDNKNGDEALRLYGRMIEV 371 (499)
Q Consensus 352 ~~~~g~~~~a~~~~~~m~~~ 371 (499)
+...|++++|...++++.+.
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~ 106 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQKALEL 106 (125)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHh
Confidence 77777777777777766654
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.36 E-value=1.9e-05 Score=61.88 Aligned_cols=120 Identities=10% Similarity=-0.057 Sum_probs=98.2
Q ss_pred CCCHHHHHHHHHHHHhCCChHHHHHHHHHhhcCCCCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHH
Q 036198 174 QPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEA 253 (499)
Q Consensus 174 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~~~~~la~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a 253 (499)
+.+...|..+...+...|++++|.+.|++..+. .+.+...+..+..++...|++++|
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~-----------------------~~~~~~~~~~la~~~~~~~~~~~A 69 (133)
T 2lni_A 13 PDLALMVKNKGNECFQKGDYPQAMKHYTEAIKR-----------------------NPKDAKLYSNRAACYTKLLEFQLA 69 (133)
T ss_dssp SCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTT-----------------------CTTCHHHHHHHHHHHTTTTCHHHH
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-----------------------CCCcHHHHHHHHHHHHHhccHHHH
Confidence 445678999999999999999999999987652 122677888999999999999999
Q ss_pred HHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcC
Q 036198 254 ADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAG 321 (499)
Q Consensus 254 ~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g 321 (499)
++.|++..+.. +.+...+..+...+...|++++|.+.|++..+.. +.+...+..+..++...|
T Consensus 70 ~~~~~~a~~~~----~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 70 LKDCEECIQLE----PTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLD-SSCKEAADGYQRCMMAQY 132 (133)
T ss_dssp HHHHHHHHHHC----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-GGGTHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhC----CCchHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHhc
Confidence 99999999875 4578899999999999999999999999998763 234455666666665554
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.35 E-value=5.5e-06 Score=69.10 Aligned_cols=122 Identities=6% Similarity=0.059 Sum_probs=86.3
Q ss_pred HhcCCHhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHH-HHhcCCH
Q 036198 245 CKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEG-MCLAGKV 323 (499)
Q Consensus 245 ~~~g~~~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~-~~~~g~~ 323 (499)
...|++++|...++...+.. +.+...|..+...|...|++++|...|++..+.. +.+...+..+..+ +...|++
T Consensus 21 ~~~~~~~~A~~~~~~al~~~----p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~ 95 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRAN----PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQH 95 (177)
T ss_dssp C-----CCCCHHHHHHHHHC----CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTC
T ss_pred hhccCHHHHHHHHHHHHHhC----CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCc
Confidence 34677888888888877764 4467788888888888888888888888887653 3355666666666 6677887
Q ss_pred --HHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 036198 324 --EEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVG 372 (499)
Q Consensus 324 --~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 372 (499)
++|...++...+.... +...+..+...+...|++++|...|+++.+..
T Consensus 96 ~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 145 (177)
T 2e2e_A 96 MTAQTRAMIDKALALDSN-EITALMLLASDAFMQANYAQAIELWQKVMDLN 145 (177)
T ss_dssp CCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred chHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC
Confidence 8888888877765422 46677777777888888888888888877653
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.34 E-value=0.00034 Score=64.39 Aligned_cols=231 Identities=8% Similarity=0.019 Sum_probs=164.3
Q ss_pred HHHHHHHHhCCChHHHHHHHHHhhcCCCCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC-CHhHHHHHHHH
Q 036198 181 NLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQTLEEMIQMGHAPDNFTYNTAIDTFCKAR-MVTEAADLFEF 259 (499)
Q Consensus 181 ~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~~~~~la~~~~~~m~~~g~~p~~~~~~~li~~~~~~g-~~~~a~~~~~~ 259 (499)
+.+-....+.+..++|+++++++... . +-+..+|+.--..+...| .+++++++++.
T Consensus 58 ~~~r~~~~~~e~se~AL~lt~~~L~~----------------------n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~ 114 (349)
T 3q7a_A 58 DYFRAIAAKEEKSERALELTEIIVRM----------------------N-PAHYTVWQYRFSLLTSLNKSLEDELRLMNE 114 (349)
T ss_dssp HHHHHHHHTTCCSHHHHHHHHHHHHH----------------------C-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHh----------------------C-chhHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 33333344455567888888887652 1 114566777777777778 59999999999
Q ss_pred HHHcCCCCCCCCHHHHHHHHHHHHHc-C-CHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHH--------HHHHH
Q 036198 260 MRTKGSTISSPTAKTYAIMIVALVQN-D-RMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVE--------EAYKF 329 (499)
Q Consensus 260 m~~~~~~~~~p~~~~~~~ll~~~~~~-~-~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~--------~a~~~ 329 (499)
+.... +-+..+|+.-...+.+. + ++++++++++.+.+.. +-|...|+--.-.+.+.|.++ ++++.
T Consensus 115 ~L~~n----PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~ 189 (349)
T 3q7a_A 115 FAVQN----LKSYQVWHHRLLLLDRISPQDPVSEIEYIHGSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDW 189 (349)
T ss_dssp HHHTT----CCCHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHH
T ss_pred HHHhC----CCcHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHHH
Confidence 99886 45788888888777776 7 8899999999999764 446667765555555555555 89999
Q ss_pred HHHHHhCCCCCCHhhHHHHHHHHHHcCC-------HHHHHHHHHHHHHCCCCcChhhHHHHHHHHHhcCCc---------
Q 036198 330 LEEMGNKGYPPDIVTYNCFLKVLCDNKN-------GDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEP--------- 393 (499)
Q Consensus 330 ~~~m~~~~~~p~~~~~~~li~~~~~~g~-------~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~--------- 393 (499)
++++.+..+. |..+|+.....+.+.++ ++++++.+++++.... -|...|+-+-..+.+.|..
T Consensus 190 ~~k~I~~dp~-N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~P-~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~ 267 (349)
T 3q7a_A 190 CNEMLRVDGR-NNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLIP-HNVSAWNYLRGFLKHFSLPLVPILPAIL 267 (349)
T ss_dssp HHHHHHHCTT-CHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCSGGGHHHHG
T ss_pred HHHHHHhCCC-CHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhcCCCccccccccc
Confidence 9999887655 78888888888877776 6889999988887642 4677787766666666654
Q ss_pred -----------hHHHHHHHHHhHCC-----CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHC
Q 036198 394 -----------DGAFETWHEMDKRG-----CAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNK 441 (499)
Q Consensus 394 -----------~~a~~~~~~m~~~~-----~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 441 (499)
....++...+...+ -.++......+++.|...|+.++|.++++.+.+.
T Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~ 331 (349)
T 3q7a_A 268 PYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSE 331 (349)
T ss_dssp GGTC--------------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred ccccccccccchhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Confidence 22333333332221 1367888899999999999999999999998755
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.34 E-value=2.1e-05 Score=61.41 Aligned_cols=97 Identities=11% Similarity=0.061 Sum_probs=43.6
Q ss_pred HHHHHHHHhcCCchHHHHHHHHHhHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 036198 381 NMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVI 460 (499)
Q Consensus 381 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~ 460 (499)
......|.+.|++++|.+.|++..+.. +.+...|..+..+|.+.|++++|...+++.++.+. .+...|..+..++...
T Consensus 17 ~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~ 94 (126)
T 4gco_A 17 KNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLDS-KFIKGYIRKAACLVAM 94 (126)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhh-hhhHHHHHHHHHHHHC
Confidence 333444444444444444444443321 11334444444444444444444444444444331 1344444444445555
Q ss_pred CCHHHHHHHHHHHHhhcCh
Q 036198 461 GDLGAIHKLSDHMRKFYNP 479 (499)
Q Consensus 461 g~~~~a~~~~~~m~~~~~~ 479 (499)
|++++|.+.|++..+..|.
T Consensus 95 ~~~~~A~~~~~~al~l~P~ 113 (126)
T 4gco_A 95 REWSKAQRAYEDALQVDPS 113 (126)
T ss_dssp TCHHHHHHHHHHHHHHCTT
T ss_pred CCHHHHHHHHHHHHHHCcC
Confidence 5555555555554444443
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.33 E-value=2.1e-05 Score=70.01 Aligned_cols=129 Identities=12% Similarity=-0.079 Sum_probs=61.9
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCcChhhHHHHHHHHHhcCCchHHHHHHHHHhHCCCCCC--HHHHHHHHHHHHhC
Q 036198 348 FLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQD--VDTYCVMIDGLFDC 425 (499)
Q Consensus 348 li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~--~~~~~~li~~~~~~ 425 (499)
....+...|++++|.++|+.+...+ |+......+...+.+.+++++|+..|+...... .|. ...+..+-.++...
T Consensus 108 yA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~a~~~LG~al~~L 184 (282)
T 4f3v_A 108 FAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGAAGVAHGVAAANL 184 (282)
T ss_dssp HHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHHHHHHHHHHHHHC
Confidence 3344445555555555555554432 322233333334555555555555555333221 010 12344445555556
Q ss_pred CCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCh
Q 036198 426 SKVEEACFLLEEVVNKGLKLP--YRKFDSYLMQLSVIGDLGAIHKLSDHMRKFYNP 479 (499)
Q Consensus 426 g~~~~a~~~~~~m~~~~~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~ 479 (499)
|++++|+..|++.......|. .........++.+.|+.++|...|+++....|.
T Consensus 185 G~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~ 240 (282)
T 4f3v_A 185 ALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE 240 (282)
T ss_dssp TCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC
T ss_pred CCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc
Confidence 666666666665553222132 223344445555566666666666666655554
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.33 E-value=2.2e-05 Score=63.41 Aligned_cols=103 Identities=9% Similarity=-0.090 Sum_probs=73.2
Q ss_pred hhhHHHHHHHHHhcCCchHHHHHHHHHhHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 036198 377 VQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQ 456 (499)
Q Consensus 377 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~ 456 (499)
...+..+...+.+.|++++|...|+...+.. +-+...|..+..+|...|++++|...|++..+.... ++..|..+..+
T Consensus 36 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~-~~~~~~~lg~~ 113 (151)
T 3gyz_A 36 MDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKN-DYTPVFHTGQC 113 (151)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSS-CCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCC-CcHHHHHHHHH
Confidence 3456666677777778888888777776652 225667777777777778888888888777776532 56677777777
Q ss_pred HHhcCCHHHHHHHHHHHHhhcChhH
Q 036198 457 LSVIGDLGAIHKLSDHMRKFYNPVI 481 (499)
Q Consensus 457 ~~~~g~~~~a~~~~~~m~~~~~~~~ 481 (499)
|...|++++|.+.|++..+..+...
T Consensus 114 ~~~lg~~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 114 QLRLKAPLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCHH
Confidence 7788888888888887777765543
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.32 E-value=2.9e-05 Score=60.45 Aligned_cols=120 Identities=13% Similarity=0.051 Sum_probs=78.1
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHH
Q 036198 271 TAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLK 350 (499)
Q Consensus 271 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~ 350 (499)
+...+..+...+...|++++|...|++..+.. +.+...+..+...+...|++++|.+.++...+... .+...+..+..
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~ 88 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDP-AYSKAYGRMGL 88 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCc-cCHHHHHHHHH
Confidence 34566666777777777777777777776653 33566666677777777777777777777665432 24556666667
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCcChhhHHHHHHHHHhcCCc
Q 036198 351 VLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEP 393 (499)
Q Consensus 351 ~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~ 393 (499)
.+...|++++|...+++..+... .+...+..+..++...|++
T Consensus 89 ~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 89 ALSSLNKHVEAVAYYKKALELDP-DNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHTTC
T ss_pred HHHHhCCHHHHHHHHHHHHhcCc-cchHHHHHHHHHHHHHhcC
Confidence 77777777777777777666431 2445555666666655543
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.31 E-value=5.8e-06 Score=74.93 Aligned_cols=96 Identities=13% Similarity=0.005 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHhHHHH
Q 036198 234 NFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEV 313 (499)
Q Consensus 234 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l 313 (499)
...+..+...+.+.|++++|+..|++..+.. +.+...|..+..++.+.|++++|...+++..+.. +.+...+..+
T Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~----p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l 78 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRN----PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFL 78 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence 3444444455555555555555555554442 2234444444445555555555555555444432 2233344444
Q ss_pred HHHHHhcCCHHHHHHHHHHHH
Q 036198 314 LEGMCLAGKVEEAYKFLEEMG 334 (499)
Q Consensus 314 l~~~~~~g~~~~a~~~~~~m~ 334 (499)
..++...|++++|...|+...
T Consensus 79 g~~~~~~g~~~~A~~~~~~al 99 (281)
T 2c2l_A 79 GQCQLEMESYDEAIANLQRAY 99 (281)
T ss_dssp HHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHH
Confidence 444444444444444444433
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.30 E-value=4.2e-06 Score=75.89 Aligned_cols=194 Identities=10% Similarity=-0.006 Sum_probs=132.4
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHH
Q 036198 271 TAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLK 350 (499)
Q Consensus 271 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~ 350 (499)
+...+..+...+...|++++|...|++..+.. +.+...|..+..+|.+.|++++|.+.++...+... -+...+..+..
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~ 80 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDG-QSVKAHFFLGQ 80 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCT-TCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CCHHHHHHHHH
Confidence 56778888999999999999999999999874 34788899999999999999999999999988743 36788899999
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCcCh-hhHHHHHHHHHhcCCchHHHHHHHHHhHCCCCCCHHHHHHHHHHHHhCCCHH
Q 036198 351 VLCDNKNGDEALRLYGRMIEVGCWPSV-QTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVE 429 (499)
Q Consensus 351 ~~~~~g~~~~a~~~~~~m~~~~~~~~~-~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~ 429 (499)
++...|++++|...|++..+.+ |+. ..+...+....+. .++ .-+..........+......+ ..+ ..|+.+
T Consensus 81 ~~~~~g~~~~A~~~~~~al~l~--p~~~~~~~~~~~~~~~~---~~~-~~~~~~~~~~~~~~~~i~~~l-~~l-~~~~~~ 152 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYSLA--KEQRLNFGDDIPSALRI---AKK-KRWNSIEERRIHQESELHSYL-TRL-IAAERE 152 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHH--HHTTCCCCSHHHHHHHH---HHH-HHHHHHHHTCCCCCCHHHHHH-HHH-HHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC--ccchhhHHHHHHHHHHH---HHH-HHHHHHHHHHHhhhHHHHHHH-HHH-HHHHHH
Confidence 9999999999999999987643 221 1111112211111 111 112223333334444443333 222 258888
Q ss_pred HHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhc-CCHHHHHHHHHHHHhh
Q 036198 430 EACFLLEEVVNKGLKLPYR-KFDSYLMQLSVI-GDLGAIHKLSDHMRKF 476 (499)
Q Consensus 430 ~a~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~-g~~~~a~~~~~~m~~~ 476 (499)
+|.+.+++..+.. |+.. ....+-..+.+. +.+++|.++|.+..+.
T Consensus 153 ~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 153 RELEECQRNHEGH--EDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp HHHTTTSGGGTTT--SCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred HHHHHHHhhhccc--cchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 9998888776653 4443 333443444444 6688889888877653
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.30 E-value=3.1e-05 Score=68.90 Aligned_cols=197 Identities=10% Similarity=-0.067 Sum_probs=140.2
Q ss_pred hcCCHhHHHHHHHHHHHcCCCCCCCCHHHHHHH-------HHHHHHcCCHHHHHHHHHHHHHcCCCcC------------
Q 036198 246 KARMVTEAADLFEFMRTKGSTISSPTAKTYAIM-------IVALVQNDRMEECFSLLGHMINSGCLPD------------ 306 (499)
Q Consensus 246 ~~g~~~~a~~~~~~m~~~~~~~~~p~~~~~~~l-------l~~~~~~~~~~~a~~~~~~m~~~~~~~~------------ 306 (499)
..++.+.|.+.|.+..... +-....|..+ ...+.+.++..+++..+..-.+ +.|+
T Consensus 18 ~~~d~~~A~~~F~~a~~~d----P~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a~~~~~g~y 91 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYD----ESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNARIAIGGLY 91 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHC----TTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCCEEECCTTT
T ss_pred cCCCHHHHHHHHHHHHHhC----hhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhhhhccCCcc
Confidence 6899999999999999986 3456777776 3455544444455444444333 2221
Q ss_pred ----------HHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcC
Q 036198 307 ----------VSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPS 376 (499)
Q Consensus 307 ----------~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~ 376 (499)
....-.....+...|++++|.++|+.+...+ |+......+...+.+.+++++|+..|+...... .|.
T Consensus 92 ~~~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~ 168 (282)
T 4f3v_A 92 GDITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKF 168 (282)
T ss_dssp CCCEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHH
T ss_pred cccccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-Ccc
Confidence 1223345677889999999999999987754 444366666678889999999999998654422 111
Q ss_pred --hhhHHHHHHHHHhcCCchHHHHHHHHHhHCCCCCC--HHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 036198 377 --VQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQD--VDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDS 452 (499)
Q Consensus 377 --~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ 452 (499)
...+..+-.++...|++++|+..|++.......|. .........++.+.|+.++|..+|+++.... |+......
T Consensus 169 ~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~--P~~~~~~a 246 (282)
T 4f3v_A 169 LAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTH--PEPKVAAA 246 (282)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS--CCHHHHHH
T ss_pred cHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CcHHHHHH
Confidence 34677888999999999999999999885433254 3355666777889999999999999999875 44444443
Q ss_pred H
Q 036198 453 Y 453 (499)
Q Consensus 453 l 453 (499)
|
T Consensus 247 L 247 (282)
T 4f3v_A 247 L 247 (282)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.28 E-value=0.0016 Score=59.67 Aligned_cols=236 Identities=8% Similarity=-0.059 Sum_probs=164.5
Q ss_pred HHHhcCCHh-HHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHcCCCcCHHhHH
Q 036198 243 TFCKARMVT-EAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDR----------MEECFSLLGHMINSGCLPDVSTYK 311 (499)
Q Consensus 243 ~~~~~g~~~-~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~----------~~~a~~~~~~m~~~~~~~~~~~~~ 311 (499)
...+.|.++ +|+++++.+.... +-+..+|+.--..+...+. +++++.+++.+.... +-+..+|+
T Consensus 38 ~~~~~~e~s~eaL~~t~~~L~~n----P~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~-PKny~aW~ 112 (331)
T 3dss_A 38 QKRQAGELDESVLELTSQILGAN----PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWH 112 (331)
T ss_dssp HHHHTTCCSHHHHHHHHHHHTTC----TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred HHHHcCCCCHHHHHHHHHHHHHC----chhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC-CCCHHHHH
Confidence 344566655 7999999999875 3355666654444443332 678889999888764 45677777
Q ss_pred HHHHHHHhcC--CHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCC-HHHHHHHHHHHHHCCCCcChhhHHHHHHHHH
Q 036198 312 EVLEGMCLAG--KVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKN-GDEALRLYGRMIEVGCWPSVQTYNMLISMYF 388 (499)
Q Consensus 312 ~ll~~~~~~g--~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~-~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~ 388 (499)
.-.-.+.+.| .+++++++++.+.+.... +..+|+.-.-.+...|. ++++++.+..+.+..+ -|...|+.....+.
T Consensus 113 hR~wlL~~l~~~~~~~EL~~~~k~l~~dpr-Ny~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p-~N~SAW~~R~~ll~ 190 (331)
T 3dss_A 113 HRCWLLSRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNF-SNYSSWHYRSCLLP 190 (331)
T ss_dssp HHHHHHHHCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHH
T ss_pred HHHHHHhccCcccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHH
Confidence 7666777777 489999999999987654 77888888777888888 5899999999998763 46677776666555
Q ss_pred hc--------------CCchHHHHHHHHHhHCCCCCCHHHHHHHHHHHHhC-----------CCHHHHHHHHHHHHHCCC
Q 036198 389 EL--------------GEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDC-----------SKVEEACFLLEEVVNKGL 443 (499)
Q Consensus 389 ~~--------------~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~-----------g~~~~a~~~~~~m~~~~~ 443 (499)
+. +.++++++.+....... +-|...|+-+-..+.+. +.++++++.++++.+..
T Consensus 191 ~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~-P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~- 268 (331)
T 3dss_A 191 QLHPQPDSGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELE- 268 (331)
T ss_dssp HHSCCC------CCCHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HhhhccccccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhC-
Confidence 54 34678888888877653 33666776554444444 45789999999998775
Q ss_pred CCC-HHHHHHHH---HHHHhcCCHHHHHHHHHHHHhhcChhHHHHHHHH
Q 036198 444 KLP-YRKFDSYL---MQLSVIGDLGAIHKLSDHMRKFYNPVIARRLALN 488 (499)
Q Consensus 444 ~p~-~~~~~~ll---~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~ 488 (499)
|+ ...+.+++ .+....|..+++...+.++++..|-....+-.+.
T Consensus 269 -pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r~~~y~d~~ 316 (331)
T 3dss_A 269 -PENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLR 316 (331)
T ss_dssp -TTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGGGHHHHHHHH
T ss_pred -cccchHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcchhhHHHHHH
Confidence 44 33332222 2233568888999999999998776555544443
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.27 E-value=2.2e-05 Score=73.16 Aligned_cols=96 Identities=13% Similarity=-0.047 Sum_probs=59.6
Q ss_pred hhHHHHHHHHHhcCCchHHHHHHHHHhHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 036198 378 QTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQL 457 (499)
Q Consensus 378 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~ 457 (499)
..|..+..+|.+.|++++|...+++..+.. +.+...|..+..+|...|++++|...|++..+... -+...+..+..++
T Consensus 197 ~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P-~~~~a~~~l~~~~ 274 (336)
T 1p5q_A 197 ASHLNLAMCHLKLQAFSAAIESCNKALELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYP-NNKAAKTQLAVCQ 274 (336)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-SCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHH
Confidence 456666666666666666666666665542 22555666666667777777777777777666542 2455666666666
Q ss_pred HhcCCHHHH-HHHHHHHHh
Q 036198 458 SVIGDLGAI-HKLSDHMRK 475 (499)
Q Consensus 458 ~~~g~~~~a-~~~~~~m~~ 475 (499)
.+.|+.++| ...++.|.+
T Consensus 275 ~~~~~~~~a~~~~~~~~~~ 293 (336)
T 1p5q_A 275 QRIRRQLAREKKLYANMFE 293 (336)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 667776666 345555544
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.26 E-value=2.7e-05 Score=72.54 Aligned_cols=132 Identities=6% Similarity=-0.060 Sum_probs=83.1
Q ss_pred CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCCCC-------------HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 036198 233 DNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPT-------------AKTYAIMIVALVQNDRMEECFSLLGHMI 299 (499)
Q Consensus 233 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~p~-------------~~~~~~ll~~~~~~~~~~~a~~~~~~m~ 299 (499)
+...+..+...|.+.|++++|+..|++..+.... .++ ..+|..+..+|.+.|++++|...+++..
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~--~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al 223 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEY--ESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKAL 223 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTT--CCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhc--cccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4567778888888899999999999988876521 010 3566666666666666666666666666
Q ss_pred HcCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHH-HHHHHHH
Q 036198 300 NSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEA-LRLYGRM 368 (499)
Q Consensus 300 ~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a-~~~~~~m 368 (499)
+.. +.+...|..+..+|...|++++|...|++..+.... +...+..+..++.+.|+.++| ...|+.|
T Consensus 224 ~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~a~~~l~~~~~~~~~~~~a~~~~~~~~ 291 (336)
T 1p5q_A 224 ELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPN-NKAAKTQLAVCQQRIRRQLAREKKLYANM 291 (336)
T ss_dssp HHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 553 334556666666666666666666666666554322 445555566666666666655 3344444
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.25 E-value=1.1e-05 Score=65.07 Aligned_cols=97 Identities=9% Similarity=-0.082 Sum_probs=44.9
Q ss_pred hHHHHHHHHHhcCCchHHHHHHHHHhHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 036198 379 TYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLS 458 (499)
Q Consensus 379 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~ 458 (499)
.+..+...+...|++++|...|+...+.. +.+...|..+..+|...|++++|...+++...... -+...+..+..+|.
T Consensus 23 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p-~~~~~~~~lg~~~~ 100 (148)
T 2vgx_A 23 QLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDI-XEPRFPFHAAECLL 100 (148)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCchHHHHHHHHHH
Confidence 33344444444555555555554444331 11344444444444555555555555555444431 13344444445555
Q ss_pred hcCCHHHHHHHHHHHHhhc
Q 036198 459 VIGDLGAIHKLSDHMRKFY 477 (499)
Q Consensus 459 ~~g~~~~a~~~~~~m~~~~ 477 (499)
..|++++|.+.+++..+..
T Consensus 101 ~~g~~~~A~~~~~~al~~~ 119 (148)
T 2vgx_A 101 QXGELAEAESGLFLAQELI 119 (148)
T ss_dssp HTTCHHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHHC
Confidence 5555555555555554443
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.25 E-value=1.1e-05 Score=67.23 Aligned_cols=122 Identities=9% Similarity=0.122 Sum_probs=81.9
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcChhhHHHHHHH-HHhcCCc--h
Q 036198 318 CLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISM-YFELGEP--D 394 (499)
Q Consensus 318 ~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~-~~~~~~~--~ 394 (499)
...|++++|...++...+... .+...|..+...|...|++++|...|++..+... .+...+..+..+ +...|++ +
T Consensus 21 ~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~l~~~~~~~~~~ 98 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRANP-QNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRG-ENAELYAALATVLYYQASQHMTA 98 (177)
T ss_dssp C-----CCCCHHHHHHHHHCC-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHC-SCHHHHHHHHHHHHHHTTTCCCH
T ss_pred hhccCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHhcCCcchH
Confidence 456777777777777666532 3566777777778888888888888887776431 245566666666 6677777 8
Q ss_pred HHHHHHHHHhHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC
Q 036198 395 GAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKG 442 (499)
Q Consensus 395 ~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 442 (499)
+|...++...+.. +.+...+..+...|...|++++|...++++.+..
T Consensus 99 ~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 145 (177)
T 2e2e_A 99 QTRAMIDKALALD-SNEITALMLLASDAFMQANYAQAIELWQKVMDLN 145 (177)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC
Confidence 8888887776652 2245667777777777888888888888777664
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=98.24 E-value=0.0011 Score=65.03 Aligned_cols=313 Identities=9% Similarity=-0.019 Sum_probs=175.8
Q ss_pred CHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhCCC-
Q 036198 114 EPLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLMILKQYTEKIKVKTQPEINALNLLLDALCKCGL- 192 (499)
Q Consensus 114 ~~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~li~~~~~~g~- 192 (499)
--..|...+..+- . |+++.+..+|++..... |+...|...+....+.|.
T Consensus 14 aR~vyer~l~~~P----~-~~~e~~~~iferal~~~-------------------------ps~~LW~~Y~~f~~~~~~~ 63 (493)
T 2uy1_A 14 PSAIMEHARRLYM----S-KDYRSLESLFGRCLKKS-------------------------YNLDLWMLYIEYVRKVSQK 63 (493)
T ss_dssp HHHHHHHHHHHHH----T-TCHHHHHHHHHHHSTTC-------------------------CCHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHCC----C-CCHHHHHHHHHHHhccC-------------------------CCHHHHHHHHHHHHHhCch
Confidence 3455666666665 2 77889999999887643 677777777777766653
Q ss_pred hHHHHHHHHHhhcCCC---CChhhHHHH----------------HHHHHHHHHHcCCCCCHHHHHHHHHHHH--------
Q 036198 193 VDYAETICKRVKNKVK---PNANTYNIL----------------GMQTLEEMIQMGHAPDNFTYNTAIDTFC-------- 245 (499)
Q Consensus 193 ~~~A~~~~~~m~~~~~---p~~~~~~~l----------------a~~~~~~m~~~g~~p~~~~~~~li~~~~-------- 245 (499)
.+....+|+.....+. ++...|... +..+|++.+.....--...|......-.
T Consensus 64 ~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~ 143 (493)
T 2uy1_A 64 KFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENFELELNKITGK 143 (493)
T ss_dssp --CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHH
Confidence 3455666666554222 222333222 4556666655211101112222111110
Q ss_pred -----hcCCHhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcC--C-----HHHHHHHHHHHHHcCCCcCHHhHHHH
Q 036198 246 -----KARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQND--R-----MEECFSLLGHMINSGCLPDVSTYKEV 313 (499)
Q Consensus 246 -----~~g~~~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~--~-----~~~a~~~~~~m~~~~~~~~~~~~~~l 313 (499)
..+.+..|..+++.+...- ...+...|...+..-...+ - .+.+..+|+++.... +.+...|...
T Consensus 144 ~~~~~~~~~y~~ar~~y~~~~~~~---~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~-p~~~~lW~~y 219 (493)
T 2uy1_A 144 KIVGDTLPIFQSSFQRYQQIQPLI---RGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSF-YYAEEVYFFY 219 (493)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH---HTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHH
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHH---hhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcC-CCCHHHHHHH
Confidence 0112333444444443321 0113345555555433221 1 345677888888753 4557778778
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCC------------CCcChhhHH
Q 036198 314 LEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVG------------CWPSVQTYN 381 (499)
Q Consensus 314 l~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~------------~~~~~~~~~ 381 (499)
+..+.+.|+.+.|..+++..... +.+...|. .|....+.++. ++.+.+.- .......|.
T Consensus 220 a~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~----~y~~~~e~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~ 290 (493)
T 2uy1_A 220 SEYLIGIGQKEKAKKVVERGIEM--SDGMFLSL----YYGLVMDEEAV---YGDLKRKYSMGEAESAEKVFSKELDLLRI 290 (493)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHH----HHHHHTTCTHH---HHHHHHHTC----------CHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHH----HHHhhcchhHH---HHHHHHHHHhhccchhhhhcccccHHHHH
Confidence 88888999999999999998887 32332222 23332222222 22222210 011134566
Q ss_pred HHHHHHHhcCCchHHHHHHHHHhHCCCCCCHHHHHH--HHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 036198 382 MLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCV--MIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSV 459 (499)
Q Consensus 382 ~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~--li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 459 (499)
..+....+.++.+.|..+|... .. ...+...|.. .+.... .++.+.|..+|+...+... -++..+...++-..+
T Consensus 291 ~y~~~~~r~~~~~~AR~i~~~A-~~-~~~~~~v~i~~A~lE~~~-~~d~~~ar~ife~al~~~~-~~~~~~~~yid~e~~ 366 (493)
T 2uy1_A 291 NHLNYVLKKRGLELFRKLFIEL-GN-EGVGPHVFIYCAFIEYYA-TGSRATPYNIFSSGLLKHP-DSTLLKEEFFLFLLR 366 (493)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHH-TT-SCCCHHHHHHHHHHHHHH-HCCSHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHh-hC-CCCChHHHHHHHHHHHHH-CCChHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHH
Confidence 6777777788899999999998 32 1224444432 222222 2369999999999887642 245566677777788
Q ss_pred cCCHHHHHHHHHHH
Q 036198 460 IGDLGAIHKLSDHM 473 (499)
Q Consensus 460 ~g~~~~a~~~~~~m 473 (499)
.|+.+.|..+++++
T Consensus 367 ~~~~~~aR~l~er~ 380 (493)
T 2uy1_A 367 IGDEENARALFKRL 380 (493)
T ss_dssp HTCHHHHHHHHHHS
T ss_pred cCCHHHHHHHHHHH
Confidence 99999999888886
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.24 E-value=7e-05 Score=56.95 Aligned_cols=98 Identities=9% Similarity=-0.004 Sum_probs=63.8
Q ss_pred HHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHhHHHH
Q 036198 234 NFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEV 313 (499)
Q Consensus 234 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l 313 (499)
...+..+...+...|++++|.+.|+...... +.+...+..+...+...|++++|...+++..+.. +.+...+..+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~----~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~ 78 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLD----PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRK 78 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHC----CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHH
Confidence 4455666667777777777777777776654 3356666666667777777777777777766553 2345556666
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhC
Q 036198 314 LEGMCLAGKVEEAYKFLEEMGNK 336 (499)
Q Consensus 314 l~~~~~~g~~~~a~~~~~~m~~~ 336 (499)
..++...|++++|.+.++...+.
T Consensus 79 a~~~~~~~~~~~A~~~~~~~~~~ 101 (118)
T 1elw_A 79 AAALEFLNRFEEAKRTYEEGLKH 101 (118)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHhhHHHHHHHHHHHHHc
Confidence 66666667777777666666554
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.20 E-value=9.2e-06 Score=65.59 Aligned_cols=93 Identities=9% Similarity=-0.127 Sum_probs=38.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHH
Q 036198 275 YAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCD 354 (499)
Q Consensus 275 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~ 354 (499)
+..+...+...|++++|...|+...+.. +.+...+..+..+|...|++++|.+.|+........ +...+..+..+|..
T Consensus 24 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~lg~~~~~ 101 (148)
T 2vgx_A 24 LYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIX-EPRFPFHAAECLLQ 101 (148)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CchHHHHHHHHHHH
Confidence 3333444444444444444444444332 223333444444444444444444444444333211 23334444444444
Q ss_pred cCCHHHHHHHHHHHH
Q 036198 355 NKNGDEALRLYGRMI 369 (499)
Q Consensus 355 ~g~~~~a~~~~~~m~ 369 (499)
.|++++|...|+...
T Consensus 102 ~g~~~~A~~~~~~al 116 (148)
T 2vgx_A 102 XGELAEAESGLFLAQ 116 (148)
T ss_dssp TTCHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHH
Confidence 444444444444443
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.19 E-value=5e-05 Score=59.05 Aligned_cols=98 Identities=13% Similarity=0.064 Sum_probs=64.8
Q ss_pred HHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHhHHHH
Q 036198 234 NFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEV 313 (499)
Q Consensus 234 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l 313 (499)
...|..+...+.+.|++++|+..|++..+.. +.+...|..+..++...|++++|...+++..+.. +.+...|..+
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~----p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l 78 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRA----PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRK 78 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC----CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHH
Confidence 3455666666777777777777777776654 3456667777777777777777777777776653 3345566666
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhC
Q 036198 314 LEGMCLAGKVEEAYKFLEEMGNK 336 (499)
Q Consensus 314 l~~~~~~g~~~~a~~~~~~m~~~ 336 (499)
..++...|++++|.+.|++..+.
T Consensus 79 g~~~~~~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 79 ATAQIAVKEYASALETLDAARTK 101 (126)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCHHHHHHHHHHHHHh
Confidence 66677777777777766666553
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.14 E-value=9.4e-05 Score=57.47 Aligned_cols=96 Identities=17% Similarity=0.100 Sum_probs=47.8
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHhHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 036198 380 YNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSV 459 (499)
Q Consensus 380 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 459 (499)
+..+...+.+.|++++|...|++..+.. +.+...|..+..+|...|++++|...+++..+... -+...+..+..++..
T Consensus 7 ~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~ 84 (126)
T 3upv_A 7 ARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDP-NFVRAYIRKATAQIA 84 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHH
Confidence 3344444445555555555555444431 12344455555555555555555555555554432 234455555555555
Q ss_pred cCCHHHHHHHHHHHHhhc
Q 036198 460 IGDLGAIHKLSDHMRKFY 477 (499)
Q Consensus 460 ~g~~~~a~~~~~~m~~~~ 477 (499)
.|++++|.+.+++..+..
T Consensus 85 ~~~~~~A~~~~~~al~~~ 102 (126)
T 3upv_A 85 VKEYASALETLDAARTKD 102 (126)
T ss_dssp TTCHHHHHHHHHHHHHHH
T ss_pred HhCHHHHHHHHHHHHHhC
Confidence 555555555555555544
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.14 E-value=3.2e-05 Score=58.29 Aligned_cols=98 Identities=20% Similarity=0.083 Sum_probs=61.2
Q ss_pred HHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc--CHHhHH
Q 036198 234 NFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLP--DVSTYK 311 (499)
Q Consensus 234 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~--~~~~~~ 311 (499)
...+..+...+...|++++|...|++..+.. +.+...+..+...+...|++++|...+++..+.. +. +...+.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~----~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~ 80 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLD----PEESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWA 80 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC----cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHH
Confidence 3455566666667777777777777666654 3345566666666666667777766666666542 22 355566
Q ss_pred HHHHHHHhc-CCHHHHHHHHHHHHhC
Q 036198 312 EVLEGMCLA-GKVEEAYKFLEEMGNK 336 (499)
Q Consensus 312 ~ll~~~~~~-g~~~~a~~~~~~m~~~ 336 (499)
.+...+... |++++|.+.++.....
T Consensus 81 ~l~~~~~~~~~~~~~A~~~~~~~~~~ 106 (112)
T 2kck_A 81 AKADALRYIEGKEVEAEIAEARAKLE 106 (112)
T ss_dssp HHHHHHTTCSSCSHHHHHHHHHHGGG
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHhhc
Confidence 666666666 6666666666666554
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.13 E-value=0.00017 Score=69.53 Aligned_cols=200 Identities=10% Similarity=-0.002 Sum_probs=141.2
Q ss_pred HHHHHhcCCHhHHHHHHHHHHHcCCCCCCC-------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCCcC
Q 036198 241 IDTFCKARMVTEAADLFEFMRTKGSTISSP-------------TAKTYAIMIVALVQNDRMEECFSLLGHMINS-GCLPD 306 (499)
Q Consensus 241 i~~~~~~g~~~~a~~~~~~m~~~~~~~~~p-------------~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~-~~~~~ 306 (499)
...+.+.|++++|++.|..+.+........ ...++..+...|...|++++|.+.+..+.+. +..++
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~ 90 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAK 90 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccc
Confidence 456788999999999999998865321000 0134778899999999999999999988753 11122
Q ss_pred H----HhHHHHHHHHHhcCCHHHHHHHHHHHHh----CCCCC-CHhhHHHHHHHHHHcCCHHHHHHHHHHHHHC--CC--
Q 036198 307 V----STYKEVLEGMCLAGKVEEAYKFLEEMGN----KGYPP-DIVTYNCFLKVLCDNKNGDEALRLYGRMIEV--GC-- 373 (499)
Q Consensus 307 ~----~~~~~ll~~~~~~g~~~~a~~~~~~m~~----~~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--~~-- 373 (499)
. .+.+.+-..+...|+.+.|.+++..... .+..+ -..++..+...|...|++++|..+++++... +.
T Consensus 91 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~ 170 (434)
T 4b4t_Q 91 SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDD 170 (434)
T ss_dssp HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSC
T ss_pred hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhccc
Confidence 2 1223333444567899999999887643 22222 2457788899999999999999999987653 11
Q ss_pred Cc-ChhhHHHHHHHHHhcCCchHHHHHHHHHhHC----CCCCC--HHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 036198 374 WP-SVQTYNMLISMYFELGEPDGAFETWHEMDKR----GCAQD--VDTYCVMIDGLFDCSKVEEACFLLEEVVN 440 (499)
Q Consensus 374 ~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----~~~p~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 440 (499)
.+ ...++..++..|...|++++|..+++..... +..+. ...+..+...+...|++++|...+.+..+
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 171 KPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp STHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 11 2457888999999999999999999887542 21211 24566667777788999999888876653
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.12 E-value=8.6e-05 Score=56.44 Aligned_cols=97 Identities=19% Similarity=0.060 Sum_probs=49.7
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcChhhHHHHHHHHHhcCCchHHHHHHHHHhHCCCCCCHHHHHHHHHHH
Q 036198 343 VTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGL 422 (499)
Q Consensus 343 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~ 422 (499)
..+..+...+...|++++|...+++..... +.+...+..+..++...|++++|...+++..+.. +.+...+..+..++
T Consensus 5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~ 82 (118)
T 1elw_A 5 NELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHHHH
Confidence 344455555555566666666665555432 1234445555555555555555555555554431 11344445555555
Q ss_pred HhCCCHHHHHHHHHHHHHC
Q 036198 423 FDCSKVEEACFLLEEVVNK 441 (499)
Q Consensus 423 ~~~g~~~~a~~~~~~m~~~ 441 (499)
...|++++|...+++..+.
T Consensus 83 ~~~~~~~~A~~~~~~~~~~ 101 (118)
T 1elw_A 83 EFLNRFEEAKRTYEEGLKH 101 (118)
T ss_dssp HHTTCHHHHHHHHHHHHTT
T ss_pred HHHhhHHHHHHHHHHHHHc
Confidence 5555555555555555443
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.11 E-value=0.00016 Score=69.71 Aligned_cols=200 Identities=9% Similarity=-0.040 Sum_probs=142.5
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCcC----------------HHhHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCC
Q 036198 279 IVALVQNDRMEECFSLLGHMINSGCLPD----------------VSTYKEVLEGMCLAGKVEEAYKFLEEMGNKG-YPPD 341 (499)
Q Consensus 279 l~~~~~~~~~~~a~~~~~~m~~~~~~~~----------------~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~-~~p~ 341 (499)
.+.+.+.|++++|.+.|..+.+...... ...+..+...|...|++++|.+.+..+...- ..++
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~ 90 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAK 90 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccc
Confidence 3566789999999999999987532111 1246778999999999999999998865431 1112
Q ss_pred H----hhHHHHHHHHHHcCCHHHHHHHHHHHHH----CCCCcC-hhhHHHHHHHHHhcCCchHHHHHHHHHhHC--CC--
Q 036198 342 I----VTYNCFLKVLCDNKNGDEALRLYGRMIE----VGCWPS-VQTYNMLISMYFELGEPDGAFETWHEMDKR--GC-- 408 (499)
Q Consensus 342 ~----~~~~~li~~~~~~g~~~~a~~~~~~m~~----~~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~--~~-- 408 (499)
. .+.+.+-..+...|+++.|..+++.... .+..+. ..++..+...|...|++++|..+++.+... +.
T Consensus 91 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~ 170 (434)
T 4b4t_Q 91 SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDD 170 (434)
T ss_dssp HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSC
T ss_pred hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhccc
Confidence 2 1223333344457899999999988764 232233 457788999999999999999999987542 11
Q ss_pred CC-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHC--CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcC
Q 036198 409 AQ-DVDTYCVMIDGLFDCSKVEEACFLLEEVVNK--GLKLP----YRKFDSYLMQLSVIGDLGAIHKLSDHMRKFYN 478 (499)
Q Consensus 409 ~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~ 478 (499)
.+ ....+..++..|...|++++|..++++.... .+..+ ...+..+...+...|++++|...+.+..+.+.
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~~~~ 247 (434)
T 4b4t_Q 171 KPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFESYH 247 (434)
T ss_dssp STHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhh
Confidence 12 2457888899999999999999999887643 22212 24566667777889999999998888776543
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.10 E-value=6.6e-05 Score=59.90 Aligned_cols=97 Identities=8% Similarity=-0.104 Sum_probs=62.0
Q ss_pred HHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHhHHHHH
Q 036198 235 FTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVL 314 (499)
Q Consensus 235 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll 314 (499)
..+..+...+.+.|++++|+..|+...... +.+...|..+..++...|++++|...|+...+.. +.+...+..+.
T Consensus 19 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~----p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg 93 (142)
T 2xcb_A 19 EQLYALGFNQYQAGKWDDAQKIFQALCMLD----HYDARYFLGLGACRQSLGLYEQALQSYSYGALMD-INEPRFPFHAA 93 (142)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHH
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHHhC----CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHH
Confidence 344555666667777777777777766654 3456666666667777777777777777766653 33445555666
Q ss_pred HHHHhcCCHHHHHHHHHHHHhC
Q 036198 315 EGMCLAGKVEEAYKFLEEMGNK 336 (499)
Q Consensus 315 ~~~~~~g~~~~a~~~~~~m~~~ 336 (499)
.+|...|++++|.+.|+...+.
T Consensus 94 ~~~~~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 94 ECHLQLGDLDGAESGFYSARAL 115 (142)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHh
Confidence 6666667777776666665543
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.10 E-value=0.00011 Score=57.97 Aligned_cols=98 Identities=12% Similarity=0.010 Sum_probs=53.1
Q ss_pred CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHhHHH
Q 036198 233 DNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKE 312 (499)
Q Consensus 233 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ 312 (499)
+...+..+...+.+.|++++|+..|+...... +.+...|..+..++...|++++|...++...+.. +.+...+..
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~ 82 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN----PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFF 82 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC----cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHHH
Confidence 44555555555666666666666666555543 2344555555555555566666665555555443 223444555
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHh
Q 036198 313 VLEGMCLAGKVEEAYKFLEEMGN 335 (499)
Q Consensus 313 ll~~~~~~g~~~~a~~~~~~m~~ 335 (499)
+..++...|++++|...|+...+
T Consensus 83 l~~~~~~~~~~~~A~~~~~~a~~ 105 (137)
T 3q49_B 83 LGQCQLEMESYDEAIANLQRAYS 105 (137)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHHH
Confidence 55555555555555555555443
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.09 E-value=5.7e-05 Score=60.28 Aligned_cols=93 Identities=8% Similarity=-0.044 Sum_probs=41.8
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCCcChhhHHHHHHHHHhcCCchHHHHHHHHHhHCCCCCCHHHHHHHHHHHHhC
Q 036198 346 NCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDC 425 (499)
Q Consensus 346 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 425 (499)
..+...+.+.|++++|...|++...... .+...|..+..+|...|++++|...|+...+.. +.+...+..+..+|...
T Consensus 22 ~~~a~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~ 99 (142)
T 2xcb_A 22 YALGFNQYQAGKWDDAQKIFQALCMLDH-YDARYFLGLGACRQSLGLYEQALQSYSYGALMD-INEPRFPFHAAECHLQL 99 (142)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHccHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHHc
Confidence 3334444445555555555555444321 233444444444455555555555555444431 11233344444444445
Q ss_pred CCHHHHHHHHHHHHH
Q 036198 426 SKVEEACFLLEEVVN 440 (499)
Q Consensus 426 g~~~~a~~~~~~m~~ 440 (499)
|++++|...+++..+
T Consensus 100 g~~~~A~~~~~~al~ 114 (142)
T 2xcb_A 100 GDLDGAESGFYSARA 114 (142)
T ss_dssp TCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH
Confidence 555555555544443
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.09 E-value=5.7e-05 Score=58.74 Aligned_cols=99 Identities=11% Similarity=0.124 Sum_probs=61.4
Q ss_pred HHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC--CcC----H
Q 036198 234 NFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGC--LPD----V 307 (499)
Q Consensus 234 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~--~~~----~ 307 (499)
...+..+...+...|++++|...|++..+.. +.+...+..+...+...|++++|...++...+... .++ .
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~----~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ 79 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELD----PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIA 79 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC----CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHH
Confidence 3455666667777777777777777776654 33566666666777777777777777776665421 111 4
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 036198 308 STYKEVLEGMCLAGKVEEAYKFLEEMGNK 336 (499)
Q Consensus 308 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~ 336 (499)
.++..+...+...|++++|.+.|+...+.
T Consensus 80 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 108 (131)
T 1elr_A 80 KAYARIGNSYFKEEKYKDAIHFYNKSLAE 108 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 45555556666666666666666665553
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.07 E-value=0.00011 Score=60.23 Aligned_cols=99 Identities=7% Similarity=-0.073 Sum_probs=74.0
Q ss_pred CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHhHHH
Q 036198 233 DNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKE 312 (499)
Q Consensus 233 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ 312 (499)
+...+..+...+.+.|++++|++.|++..+.. +.+...|..+..+|...|++++|...|++..+.. +.+...|..
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~----p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~ 84 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIA----PANPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSR 84 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHH
Confidence 45567777777888888888888888877764 3467777777888888888888888888877764 335667777
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhC
Q 036198 313 VLEGMCLAGKVEEAYKFLEEMGNK 336 (499)
Q Consensus 313 ll~~~~~~g~~~~a~~~~~~m~~~ 336 (499)
+..+|...|++++|.+.|++..+.
T Consensus 85 lg~~~~~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 85 LGLARFDMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHHh
Confidence 777778888888888887777654
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.07 E-value=7.9e-05 Score=63.31 Aligned_cols=123 Identities=11% Similarity=0.047 Sum_probs=65.0
Q ss_pred HHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCCCC--------------HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 036198 234 NFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPT--------------AKTYAIMIVALVQNDRMEECFSLLGHMI 299 (499)
Q Consensus 234 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~p~--------------~~~~~~ll~~~~~~~~~~~a~~~~~~m~ 299 (499)
...+..+...+.+.|++++|++.|++..+.... .|+ ...|..+..+|...|++++|...++...
T Consensus 38 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~--~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al 115 (198)
T 2fbn_A 38 AFDIKEEGNEFFKKNEINEAIVKYKEALDFFIH--TEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVL 115 (198)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTT--CTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhc--ccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 345666777788888888888888888775421 111 1445555555555555555555555555
Q ss_pred HcCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHH
Q 036198 300 NSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDE 360 (499)
Q Consensus 300 ~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~ 360 (499)
+.. +.+...+..+..+|...|++++|.+.|+...+... -+...+..+..++...++.++
T Consensus 116 ~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~~~~~~ 174 (198)
T 2fbn_A 116 KID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASLNP-NNLDIRNSYELCVNKLKEARK 174 (198)
T ss_dssp HHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHHHHHC
T ss_pred HhC-cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHHHHHHHH
Confidence 442 23344444555555555555555555555444321 133344444444444333333
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.06 E-value=0.00022 Score=56.83 Aligned_cols=98 Identities=14% Similarity=0.030 Sum_probs=59.5
Q ss_pred CHHHHHHHHHHHHhCCChHHHHHHHHHhhcCCCCChhhHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHhcCCHh
Q 036198 176 EINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQTLEEMIQMGHAPD----NFTYNTAIDTFCKARMVT 251 (499)
Q Consensus 176 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~~~~~la~~~~~~m~~~g~~p~----~~~~~~li~~~~~~g~~~ 251 (499)
+...+..+...+...|++++|.+.|++..+ ..|+ ...+..+..+|...|+++
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~------------------------~~~~~~~~~~~~~~~a~~~~~~~~~~ 82 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALG------------------------LDATPQDQAVLHRNRAACHLKLEDYD 82 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHT------------------------SCCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHH------------------------HcccchHHHHHHHHHHHHHHHHccHH
Confidence 455666666666666677766666666544 1233 455556666666666666
Q ss_pred HHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 036198 252 EAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINS 301 (499)
Q Consensus 252 ~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~ 301 (499)
+|++.+++..+.. +.+...+..+..++...|++++|...|++..+.
T Consensus 83 ~A~~~~~~~~~~~----~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~ 128 (148)
T 2dba_A 83 KAETEASKAIEKD----GGDVKALYRRSQALEKLGRLDQAVLDLQRCVSL 128 (148)
T ss_dssp HHHHHHHHHHHHT----SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhC----ccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 6666666666553 234555666666666666666666666666554
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.04 E-value=5.3e-05 Score=57.08 Aligned_cols=98 Identities=11% Similarity=0.085 Sum_probs=49.5
Q ss_pred hHHHHHHHHHhcCCchHHHHHHHHHhHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHH
Q 036198 379 TYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKL--PYRKFDSYLMQ 456 (499)
Q Consensus 379 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p--~~~~~~~ll~~ 456 (499)
.+..+...+...|++++|...++...+.. +.+...+..+...+...|++++|...+++..+.. +. +...+..+..+
T Consensus 8 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l~~~ 85 (112)
T 2kck_A 8 EYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAKADA 85 (112)
T ss_dssp GGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHHHHH
Confidence 34444444555555555555555544431 1234445555555555555555555555555443 11 34455555555
Q ss_pred HHhc-CCHHHHHHHHHHHHhhcC
Q 036198 457 LSVI-GDLGAIHKLSDHMRKFYN 478 (499)
Q Consensus 457 ~~~~-g~~~~a~~~~~~m~~~~~ 478 (499)
+... |++++|.+.+++..+..+
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~~p 108 (112)
T 2kck_A 86 LRYIEGKEVEAEIAEARAKLEHH 108 (112)
T ss_dssp HTTCSSCSHHHHHHHHHHGGGCC
T ss_pred HHHHhCCHHHHHHHHHHHhhccc
Confidence 5555 555555555555555444
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.03 E-value=7.6e-05 Score=58.01 Aligned_cols=98 Identities=7% Similarity=0.058 Sum_probs=58.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC--CCC----HhhHH
Q 036198 273 KTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGY--PPD----IVTYN 346 (499)
Q Consensus 273 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~--~p~----~~~~~ 346 (499)
..+..+...+...|++++|...|+...+.. +.+...+..+...+...|++++|...++....... .++ ..++.
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 455566666666777777777777666553 33455566666666666666666666666554321 111 44555
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHC
Q 036198 347 CFLKVLCDNKNGDEALRLYGRMIEV 371 (499)
Q Consensus 347 ~li~~~~~~g~~~~a~~~~~~m~~~ 371 (499)
.+...+...|++++|...|+...+.
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~~ 108 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLAE 108 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHh
Confidence 5556666666666666666666553
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.03 E-value=0.00021 Score=56.96 Aligned_cols=97 Identities=9% Similarity=-0.037 Sum_probs=44.8
Q ss_pred hHHHHHHHHHhcCCchHHHHHHHHHhHCCCCCC----HHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 036198 379 TYNMLISMYFELGEPDGAFETWHEMDKRGCAQD----VDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYL 454 (499)
Q Consensus 379 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll 454 (499)
.+..+...+...|++++|.+.|+...+. .|+ ...+..+...|...|++++|...+++..+... .+...+..+.
T Consensus 30 ~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a 106 (148)
T 2dba_A 30 QLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDG-GDVKALYRRS 106 (148)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTS-CCHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCc-cCHHHHHHHH
Confidence 3444444444444444444444444432 222 33444444444455555555555554444321 1344444444
Q ss_pred HHHHhcCCHHHHHHHHHHHHhhcC
Q 036198 455 MQLSVIGDLGAIHKLSDHMRKFYN 478 (499)
Q Consensus 455 ~~~~~~g~~~~a~~~~~~m~~~~~ 478 (499)
.++...|++++|.+.+++..+..+
T Consensus 107 ~~~~~~~~~~~A~~~~~~al~~~p 130 (148)
T 2dba_A 107 QALEKLGRLDQAVLDLQRCVSLEP 130 (148)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCS
T ss_pred HHHHHcCCHHHHHHHHHHHHHcCC
Confidence 555555555555555555554443
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.02 E-value=9.7e-05 Score=60.56 Aligned_cols=100 Identities=12% Similarity=0.037 Sum_probs=75.3
Q ss_pred CHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcChhhHHHHHHHHHhcCCchHHHHHHHHHhHCCCCCCHHHHHHHHH
Q 036198 341 DIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMID 420 (499)
Q Consensus 341 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~ 420 (499)
+...+..+...+.+.|++++|...|++..+.. ..+...|..+..+|...|++++|...++...+.. +-+...|..+..
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 87 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSRLGL 87 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 45567777778888888888888888887754 2356677788888888888888888888877653 225667777888
Q ss_pred HHHhCCCHHHHHHHHHHHHHCC
Q 036198 421 GLFDCSKVEEACFLLEEVVNKG 442 (499)
Q Consensus 421 ~~~~~g~~~~a~~~~~~m~~~~ 442 (499)
+|...|++++|...|++..+..
T Consensus 88 ~~~~~g~~~~A~~~~~~al~~~ 109 (164)
T 3sz7_A 88 ARFDMADYKGAKEAYEKGIEAE 109 (164)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHhC
Confidence 8888888888888888877654
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.02 E-value=0.00015 Score=56.56 Aligned_cols=97 Identities=8% Similarity=0.102 Sum_probs=58.3
Q ss_pred HHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCcC----HH
Q 036198 235 FTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSG--CLPD----VS 308 (499)
Q Consensus 235 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~--~~~~----~~ 308 (499)
..+..+...+.+.|++++|++.|++..+.. +-+...|..+..+|...|++++|++.+++..+.. ..++ ..
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~----p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~ 84 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELD----PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAK 84 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHH
Confidence 455666677777777777777777776654 3356667777777777777777777777665431 0111 12
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 036198 309 TYKEVLEGMCLAGKVEEAYKFLEEMGN 335 (499)
Q Consensus 309 ~~~~ll~~~~~~g~~~~a~~~~~~m~~ 335 (499)
+|..+..++...|++++|.+.|++...
T Consensus 85 ~~~~lg~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 85 AMSRAGNAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 344445555555666666665555444
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.02 E-value=0.00017 Score=56.80 Aligned_cols=100 Identities=14% Similarity=0.005 Sum_probs=68.8
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHH
Q 036198 269 SPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCF 348 (499)
Q Consensus 269 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l 348 (499)
+.+...+..+...+...|++++|...|....+.. +.+...+..+..++...|++++|...++...+.+.. +...+..+
T Consensus 6 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l 83 (137)
T 3q49_B 6 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ-SVKAHFFL 83 (137)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCch-hHHHHHHH
Confidence 3456677777777777777777777777776653 334566677777777777777777777776665322 45666677
Q ss_pred HHHHHHcCCHHHHHHHHHHHHH
Q 036198 349 LKVLCDNKNGDEALRLYGRMIE 370 (499)
Q Consensus 349 i~~~~~~g~~~~a~~~~~~m~~ 370 (499)
..++...|++++|...|++..+
T Consensus 84 ~~~~~~~~~~~~A~~~~~~a~~ 105 (137)
T 3q49_B 84 GQCQLEMESYDEAIANLQRAYS 105 (137)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHH
Confidence 7777777777777777776665
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.01 E-value=0.00015 Score=56.59 Aligned_cols=97 Identities=12% Similarity=0.082 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC--CCC----HhhHH
Q 036198 273 KTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGY--PPD----IVTYN 346 (499)
Q Consensus 273 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~--~p~----~~~~~ 346 (499)
.++..+...+.+.|++++|+..|++..+.. +.+...|..+..+|.+.|++++|++.++...+.+. .++ ..+|.
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~ 87 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMS 87 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHH
Confidence 345555666666666666666666666543 33455556666666666666666666665544211 001 12344
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHH
Q 036198 347 CFLKVLCDNKNGDEALRLYGRMIE 370 (499)
Q Consensus 347 ~li~~~~~~g~~~~a~~~~~~m~~ 370 (499)
.+..++...|++++|.+.|++..+
T Consensus 88 ~lg~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 88 RAGNAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHh
Confidence 445555555566666655555544
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.00 E-value=0.00013 Score=61.89 Aligned_cols=147 Identities=9% Similarity=-0.096 Sum_probs=100.4
Q ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHhhcCCCCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHH
Q 036198 177 INALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADL 256 (499)
Q Consensus 177 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~~~~~la~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~ 256 (499)
...+..+...+.+.|++++|.+.|++.....+.+.............. .....|..+..+|.+.|++++|+..
T Consensus 38 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~la~~~~~~~~~~~A~~~ 110 (198)
T 2fbn_A 38 AFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKN-------IEISCNLNLATCYNKNKDYPKAIDH 110 (198)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHH-------HHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHH-------HHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 346777888999999999999999998653111110000000000000 0136788899999999999999999
Q ss_pred HHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHHH-HHHHHHHh
Q 036198 257 FEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAY-KFLEEMGN 335 (499)
Q Consensus 257 ~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~-~~~~~m~~ 335 (499)
++...+.. +.+...+..+..++...|++++|...|++..+.. +.+...+..+..++...++.+++. ..+..+..
T Consensus 111 ~~~al~~~----p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~ 185 (198)
T 2fbn_A 111 ASKVLKID----KNNVKALYKLGVANMYFGFLEEAKENLYKAASLN-PNNLDIRNSYELCVNKLKEARKKDKLTFGGMFD 185 (198)
T ss_dssp HHHHHHHS----TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHC-----------
T ss_pred HHHHHHhC----cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999875 4578899999999999999999999999998764 345677777777777777766665 44444443
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.99 E-value=6e-05 Score=61.08 Aligned_cols=135 Identities=11% Similarity=-0.035 Sum_probs=79.6
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC-cC----hhhHHHHHHHHHhcCCchHHHHHHHHHhHC----CCCC-CHH
Q 036198 344 TYNCFLKVLCDNKNGDEALRLYGRMIEVGCW-PS----VQTYNMLISMYFELGEPDGAFETWHEMDKR----GCAQ-DVD 413 (499)
Q Consensus 344 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~-~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----~~~p-~~~ 413 (499)
++..+...+...|++++|...+++..+.... ++ ..++..+...+...|++++|.+.+++..+. +-.+ ...
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 90 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 4455555555666666666666555432100 11 135556666666677777777766665432 1111 134
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHC----CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcC
Q 036198 414 TYCVMIDGLFDCSKVEEACFLLEEVVNK----GLK-LPYRKFDSYLMQLSVIGDLGAIHKLSDHMRKFYN 478 (499)
Q Consensus 414 ~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~ 478 (499)
.+..+...+...|++++|...+++..+. +.. .....+..+...+...|++++|.+.+++..+...
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 160 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISR 160 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHH
Confidence 5566666777778888887777766533 211 1134566777888888888888888888776543
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.95 E-value=0.00013 Score=56.43 Aligned_cols=96 Identities=14% Similarity=0.019 Sum_probs=71.8
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHH
Q 036198 236 TYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLE 315 (499)
Q Consensus 236 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~ 315 (499)
.+..+...+.+.|++++|+..|++..+.. +.+...|..+..++...|++++|...|++..+.. +.+...+..+..
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~----P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~~~~~la~ 93 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKE----PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAV 93 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHS----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 34556677778888888888888888764 3467777788888888888888888888887764 335667777777
Q ss_pred HHHhcCCHHHHHHHHHHHHhC
Q 036198 316 GMCLAGKVEEAYKFLEEMGNK 336 (499)
Q Consensus 316 ~~~~~g~~~~a~~~~~~m~~~ 336 (499)
++...|++++|...++...+.
T Consensus 94 ~~~~~g~~~~A~~~~~~al~~ 114 (121)
T 1hxi_A 94 SHTNEHNANAALASLRAWLLS 114 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHcCCHHHHHHHHHHHHHh
Confidence 888888888888888877654
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=97.93 E-value=0.00019 Score=55.80 Aligned_cols=65 Identities=6% Similarity=-0.022 Sum_probs=29.9
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCh
Q 036198 414 TYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLP---YRKFDSYLMQLSVIGDLGAIHKLSDHMRKFYNP 479 (499)
Q Consensus 414 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~---~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~ 479 (499)
.+..+..++...|++++|...+++..+.... + ...+..+..++...|++++|.+.++++.+.+|.
T Consensus 41 ~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~ 108 (129)
T 2xev_A 41 ALYWLGESYYATRNFQLAEAQFRDLVSRYPT-HDKAAGGLLKLGLSQYGEGKNTEAQQTLQQVATQYPG 108 (129)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHCCC-CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC
Confidence 3334444444455555555555544443211 1 333444444555555555555555555544443
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.91 E-value=0.00012 Score=59.29 Aligned_cols=60 Identities=8% Similarity=0.059 Sum_probs=25.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCC-CHhhHHHHHHHHHHcCCHHHHHHHHHHHH
Q 036198 310 YKEVLEGMCLAGKVEEAYKFLEEMGNK----GYPP-DIVTYNCFLKVLCDNKNGDEALRLYGRMI 369 (499)
Q Consensus 310 ~~~ll~~~~~~g~~~~a~~~~~~m~~~----~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 369 (499)
+..+...+...|++++|.+.+++..+. +..+ ....+..+...+...|++++|...+++..
T Consensus 52 ~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~ 116 (164)
T 3ro3_A 52 YSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHL 116 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 344444444555555555544443321 0000 02234444444455555555555554443
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=97.91 E-value=0.0063 Score=55.63 Aligned_cols=112 Identities=6% Similarity=-0.047 Sum_probs=77.8
Q ss_pred CHHHHHHHHHHHHhcC--CHhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHcCCCcCHHh
Q 036198 233 DNFTYNTAIDTFCKAR--MVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDR-MEECFSLLGHMINSGCLPDVST 309 (499)
Q Consensus 233 ~~~~~~~li~~~~~~g--~~~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~-~~~a~~~~~~m~~~~~~~~~~~ 309 (499)
+..+|+.-.-.+.+.| .+++++.+++.+.+.. +-|..+|+.-.-.+...|. ++++++.++.+.+.. +-|...
T Consensus 107 ny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~d----prNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~-p~N~SA 181 (331)
T 3dss_A 107 SYGTWHHRCWLLSRLPEPNWARELELCARFLEAD----ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSS 181 (331)
T ss_dssp CHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-SCCHHH
T ss_pred CHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhC----CCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHC-CCCHHH
Confidence 6777777777777777 4889999999999876 5678888888878788887 688888888888775 456667
Q ss_pred HHHHHHHHHhc--------------CCHHHHHHHHHHHHhCCCCCCHhhHHHHHH
Q 036198 310 YKEVLEGMCLA--------------GKVEEAYKFLEEMGNKGYPPDIVTYNCFLK 350 (499)
Q Consensus 310 ~~~ll~~~~~~--------------g~~~~a~~~~~~m~~~~~~p~~~~~~~li~ 350 (499)
|+.....+.+. +.++++++.+......... |..+|+-+--
T Consensus 182 W~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~-d~SaW~Y~r~ 235 (331)
T 3dss_A 182 WHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPN-DQSAWFYHRW 235 (331)
T ss_dssp HHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHH
T ss_pred HHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCC-CHHHHHHHHH
Confidence 76665555544 3356666666666554322 4555544333
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.88 E-value=0.00014 Score=56.13 Aligned_cols=96 Identities=7% Similarity=-0.130 Sum_probs=53.1
Q ss_pred HHHHHHHHhcCCchHHHHHHHHHhHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 036198 381 NMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVI 460 (499)
Q Consensus 381 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~ 460 (499)
..+...+.+.|++++|...++...+.. +-+...|..+..++...|++++|...+++..+.... +...+..+..++...
T Consensus 21 ~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 21 MEEGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK-DIAVHAALAVSHTNE 98 (121)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHc
Confidence 344445555666666666666655431 124455555555666666666666666666555422 445555666666666
Q ss_pred CCHHHHHHHHHHHHhhcC
Q 036198 461 GDLGAIHKLSDHMRKFYN 478 (499)
Q Consensus 461 g~~~~a~~~~~~m~~~~~ 478 (499)
|++++|.+.+++..+..+
T Consensus 99 g~~~~A~~~~~~al~~~P 116 (121)
T 1hxi_A 99 HNANAALASLRAWLLSQP 116 (121)
T ss_dssp HHHHHHHHHHHHHHC---
T ss_pred CCHHHHHHHHHHHHHhCc
Confidence 666666666666655443
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=97.79 E-value=0.0012 Score=51.12 Aligned_cols=96 Identities=10% Similarity=0.001 Sum_probs=58.0
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcC---HHhHHHHHH
Q 036198 239 TAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPD---VSTYKEVLE 315 (499)
Q Consensus 239 ~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~---~~~~~~ll~ 315 (499)
.+...+.+.|++++|...|+...+.... .......+..+..++...|++++|...|+...+.. +.+ ...+..+..
T Consensus 7 ~~a~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~la~ 84 (129)
T 2xev_A 7 NVAFDALKNGKYDDASQLFLSFLELYPN-GVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY-PTHDKAAGGLLKLGL 84 (129)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCSS-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTSTTHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHCCC-CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC-CCCcccHHHHHHHHH
Confidence 3455666677777777777777665411 01111455666666777777777777777766543 112 444555666
Q ss_pred HHHhcCCHHHHHHHHHHHHhC
Q 036198 316 GMCLAGKVEEAYKFLEEMGNK 336 (499)
Q Consensus 316 ~~~~~g~~~~a~~~~~~m~~~ 336 (499)
++...|++++|...|+.+.+.
T Consensus 85 ~~~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 85 SQYGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHH
Confidence 666677777777776666554
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=97.78 E-value=6.1e-05 Score=57.76 Aligned_cols=86 Identities=19% Similarity=0.118 Sum_probs=40.2
Q ss_pred cCCHHHHHHHHHHHHHCC--CCcChhhHHHHHHHHHhcCCchHHHHHHHHHhHCCCCCCHHHHHHHHHHHHhCCCHHHHH
Q 036198 355 NKNGDEALRLYGRMIEVG--CWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEAC 432 (499)
Q Consensus 355 ~g~~~~a~~~~~~m~~~~--~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~ 432 (499)
.|++++|...|++..+.+ -+.+...+..+..+|...|++++|.+.+++..+.. +-+...+..+..++...|++++|.
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF-PNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHcCCHHHHH
Confidence 345555555555555432 11223444555555555555555555555554432 113444445555555555555555
Q ss_pred HHHHHHHHC
Q 036198 433 FLLEEVVNK 441 (499)
Q Consensus 433 ~~~~~m~~~ 441 (499)
..+++....
T Consensus 82 ~~~~~al~~ 90 (117)
T 3k9i_A 82 ELLLKIIAE 90 (117)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 555555443
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=97.78 E-value=0.00051 Score=66.79 Aligned_cols=124 Identities=7% Similarity=-0.054 Sum_probs=68.5
Q ss_pred HHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCCCC-------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 036198 234 NFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPT-------------AKTYAIMIVALVQNDRMEECFSLLGHMIN 300 (499)
Q Consensus 234 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~p~-------------~~~~~~ll~~~~~~~~~~~a~~~~~~m~~ 300 (499)
...|..+...|.+.|++++|+..|++..+.... .++ ..+|..+..+|.+.|++++|...+++..+
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~--~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~ 345 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEM--EYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALG 345 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTT--CCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcc--cccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 456777788888888888888888888775411 111 34555555555555555555555555554
Q ss_pred cCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHH
Q 036198 301 SGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEA 361 (499)
Q Consensus 301 ~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a 361 (499)
.. +.+...|..+..+|...|++++|...|++..+.... +...+..+..++.+.++.+++
T Consensus 346 ~~-p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~-~~~a~~~l~~~~~~~~~~~~a 404 (457)
T 1kt0_A 346 LD-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQ-NKAARLQISMCQKKAKEHNER 404 (457)
T ss_dssp HS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHHHH
T ss_pred cC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHH
Confidence 42 234445555555555555555555555555544221 334444444444444444444
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=97.78 E-value=0.0001 Score=72.16 Aligned_cols=122 Identities=13% Similarity=0.060 Sum_probs=97.1
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHH
Q 036198 239 TAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMC 318 (499)
Q Consensus 239 ~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~ 318 (499)
.+...+.+.|++++|++.|++..+.. +.+..+|..+..+|.+.|++++|...+++..+.. +.+...+..+..+|.
T Consensus 11 ~lg~~~~~~g~~~~A~~~~~~Al~~~----p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~ 85 (477)
T 1wao_1 11 TQANDYFKAKDYENAIKFYSQAIELN----PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNM 85 (477)
T ss_dssp SSSSSTTTTTCHHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHhC----CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 34455678899999999999999875 4468899999999999999999999999999874 456788899999999
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHH--HHHcCCHHHHHHHHH
Q 036198 319 LAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKV--LCDNKNGDEALRLYG 366 (499)
Q Consensus 319 ~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~--~~~~g~~~~a~~~~~ 366 (499)
..|++++|.+.|++..+.... +...+..+..+ +.+.|++++|.+.++
T Consensus 86 ~~g~~~eA~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 86 ALGKFRAALRDYETVVKVKPH-DKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHTCHHHHHHHHHHHHHHSTT-CTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 999999999999998876422 34455555555 788899999999988
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.76 E-value=0.00021 Score=69.63 Aligned_cols=88 Identities=13% Similarity=0.006 Sum_probs=39.2
Q ss_pred HhcCCHhHHHHHHHHHHHcCCCCCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-----C--CCcCHHhHHHH
Q 036198 245 CKARMVTEAADLFEFMRTKGSTISSP----TAKTYAIMIVALVQNDRMEECFSLLGHMINS-----G--CLPDVSTYKEV 313 (499)
Q Consensus 245 ~~~g~~~~a~~~~~~m~~~~~~~~~p----~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~-----~--~~~~~~~~~~l 313 (499)
...|++++|+.++++..+.......| ...+++.+...|...|++++|..++++..+. | .+....+++.|
T Consensus 320 ~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nL 399 (490)
T 3n71_A 320 RSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRA 399 (490)
T ss_dssp HTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHH
T ss_pred HhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 34556666666555554422111111 1334555555555555555555555544321 1 01112334444
Q ss_pred HHHHHhcCCHHHHHHHHHH
Q 036198 314 LEGMCLAGKVEEAYKFLEE 332 (499)
Q Consensus 314 l~~~~~~g~~~~a~~~~~~ 332 (499)
...|...|++++|+.++++
T Consensus 400 a~~~~~~G~~~eA~~~~~~ 418 (490)
T 3n71_A 400 GLTNWHAGHIEVGHGMICK 418 (490)
T ss_dssp HHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHH
Confidence 4444444444444444443
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=97.69 E-value=0.0034 Score=50.93 Aligned_cols=106 Identities=12% Similarity=0.045 Sum_probs=79.0
Q ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHhhcCCCCChhhHHHHHHHHHHHHHHcCCC----------CCHHHHHHHHHHHHh
Q 036198 177 INALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQTLEEMIQMGHA----------PDNFTYNTAIDTFCK 246 (499)
Q Consensus 177 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~~~~~la~~~~~~m~~~g~~----------p~~~~~~~li~~~~~ 246 (499)
...+......+.+.|++++|...|.+... ++.......-+ -+...|..+..+|.+
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~ 75 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALT---------------RLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLN 75 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH---------------HHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH---------------HHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45678888899999999999999998654 12211111111 134577788888888
Q ss_pred cCCHhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 036198 247 ARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINS 301 (499)
Q Consensus 247 ~g~~~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~ 301 (499)
.|++++|+..++...+.. +.+...|..+..+|...|++++|...|+...+.
T Consensus 76 ~~~~~~A~~~~~~al~~~----p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 76 IGDLHEAEETSSEVLKRE----ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HTCHHHHHHHHHHHHHHS----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cCcHHHHHHHHHHHHhcC----CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 888888888888888875 446778888888888888888888888888776
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=97.68 E-value=0.00051 Score=64.64 Aligned_cols=138 Identities=9% Similarity=-0.100 Sum_probs=70.2
Q ss_pred HHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHhHHHHH
Q 036198 235 FTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVL 314 (499)
Q Consensus 235 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll 314 (499)
..+..+...+.+.|++++|++.|++..+.. +... .....+ ...+. -+.+...|..+.
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~-----~~~~----------~~~~~~-------~~~~~-~~~~~~~~~nla 280 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYV-----EGSR----------AAAEDA-------DGAKL-QPVALSCVLNIG 280 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-----HHHH----------HHSCHH-------HHGGG-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHh-----hcCc----------cccChH-------HHHHH-HHHHHHHHHHHH
Confidence 456777888889999999999998887621 0000 000000 00000 011234445555
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcChhhHHHHHHHHHhcCCch
Q 036198 315 EGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPD 394 (499)
Q Consensus 315 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~ 394 (499)
.+|.+.|++++|.+.+++..+... .+...|..+..+|...|++++|...|++..+... .+...+..+..++...++.+
T Consensus 281 ~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P-~~~~~~~~l~~~~~~~~~~~ 358 (370)
T 1ihg_A 281 ACKLKMSDWQGAVDSCLEALEIDP-SNTKALYRRAQGWQGLKEYDQALADLKKAQEIAP-EDKAIQAELLKVKQKIKAQK 358 (370)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHHhCc-hhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHH
Confidence 555555555555555555554432 1344555555555555555555555555554321 13344444444444444444
Q ss_pred HHH
Q 036198 395 GAF 397 (499)
Q Consensus 395 ~a~ 397 (499)
++.
T Consensus 359 ~a~ 361 (370)
T 1ihg_A 359 DKE 361 (370)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=97.67 E-value=0.00062 Score=66.22 Aligned_cols=123 Identities=8% Similarity=-0.052 Sum_probs=57.7
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--------------HhhHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 036198 307 VSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPD--------------IVTYNCFLKVLCDNKNGDEALRLYGRMIEVG 372 (499)
Q Consensus 307 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~--------------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 372 (499)
...+..+...+.+.|++++|...|++..+...... ...|..+..+|.+.|++++|...+++..+..
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 347 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD 347 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 34555566666677777777777766655321111 2444444445555555555555555544432
Q ss_pred CCcChhhHHHHHHHHHhcCCchHHHHHHHHHhHCCCCCCHHHHHHHHHHHHhCCCHHHH
Q 036198 373 CWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEA 431 (499)
Q Consensus 373 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a 431 (499)
. .+...|..+..+|...|++++|...|++..+.. +-+...+..+..++.+.++.+++
T Consensus 348 p-~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a 404 (457)
T 1kt0_A 348 S-ANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN-PQNKAARLQISMCQKKAKEHNER 404 (457)
T ss_dssp T-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHHHH
T ss_pred C-ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHH
Confidence 1 233444444444555555555555555444431 11222334444444444444433
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.66 E-value=0.00023 Score=69.37 Aligned_cols=124 Identities=11% Similarity=-0.043 Sum_probs=62.4
Q ss_pred HHHcCCHHHHHHHHHHHHHc---CCC---c-CHHhHHHHHHHHHhcCCHHHHHHHHHHHHhC-----CC-CC-CHhhHHH
Q 036198 282 LVQNDRMEECFSLLGHMINS---GCL---P-DVSTYKEVLEGMCLAGKVEEAYKFLEEMGNK-----GY-PP-DIVTYNC 347 (499)
Q Consensus 282 ~~~~~~~~~a~~~~~~m~~~---~~~---~-~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~-----~~-~p-~~~~~~~ 347 (499)
+...|++++|+.++++..+. -+. | ...+++.|..+|...|++++|..++++..+. |. .| ...+++.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 33556666666666655432 011 1 2345566666666666666666666554321 11 11 2234556
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHH-----CCC-CcC-hhhHHHHHHHHHhcCCchHHHHHHHHHhH
Q 036198 348 FLKVLCDNKNGDEALRLYGRMIE-----VGC-WPS-VQTYNMLISMYFELGEPDGAFETWHEMDK 405 (499)
Q Consensus 348 li~~~~~~g~~~~a~~~~~~m~~-----~~~-~~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 405 (499)
|...|...|++++|+.++++..+ .|. .|+ ..+.+.+-.++...+.+++|+.++..+++
T Consensus 399 La~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666666666666655442 121 011 22334444555555555666666555543
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=97.65 E-value=0.00021 Score=69.94 Aligned_cols=121 Identities=10% Similarity=-0.081 Sum_probs=95.4
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCC
Q 036198 278 MIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKN 357 (499)
Q Consensus 278 ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 357 (499)
+...+.+.|++++|.+.|++..+.. +.+...|..+..+|.+.|++++|.+.+++..+.... +..+|..+..+|.+.|+
T Consensus 12 lg~~~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~lg~~~~~~g~ 89 (477)
T 1wao_1 12 QANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKK-YIKGYYRRAASNMALGK 89 (477)
T ss_dssp SSSSTTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTT-CHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCC
Confidence 3345667899999999999999874 446888999999999999999999999999887533 67889999999999999
Q ss_pred HHHHHHHHHHHHHCCCCcChhhHHHHHHH--HHhcCCchHHHHHHH
Q 036198 358 GDEALRLYGRMIEVGCWPSVQTYNMLISM--YFELGEPDGAFETWH 401 (499)
Q Consensus 358 ~~~a~~~~~~m~~~~~~~~~~~~~~li~~--~~~~~~~~~a~~~~~ 401 (499)
+++|.+.|++..+... .+...+..+..+ +.+.|++++|.+.++
T Consensus 90 ~~eA~~~~~~al~~~p-~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 90 FRAALRDYETVVKVKP-HDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHHHST-TCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 9999999999987542 233455555555 888899999999988
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=97.63 E-value=0.0011 Score=53.99 Aligned_cols=103 Identities=13% Similarity=0.025 Sum_probs=60.1
Q ss_pred CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHc--------CCCC------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 036198 233 DNFTYNTAIDTFCKARMVTEAADLFEFMRTK--------GSTI------SSPTAKTYAIMIVALVQNDRMEECFSLLGHM 298 (499)
Q Consensus 233 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--------~~~~------~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m 298 (499)
....+......+.+.|++++|+..|.+.... .... .+.+...|..+..+|.+.|++++|...++..
T Consensus 10 ~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~a 89 (162)
T 3rkv_A 10 SVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEV 89 (162)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 3456777888899999999999999888764 1000 0012234555555555555555555555555
Q ss_pred HHcCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 036198 299 INSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNK 336 (499)
Q Consensus 299 ~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~ 336 (499)
.+.. +.+...|..+..+|...|++++|...|+...+.
T Consensus 90 l~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 90 LKRE-ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HhcC-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 5542 233445555555555555555555555555443
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=97.58 E-value=0.00016 Score=55.43 Aligned_cols=86 Identities=10% Similarity=0.028 Sum_probs=35.4
Q ss_pred cCCHhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHH
Q 036198 247 ARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEA 326 (499)
Q Consensus 247 ~g~~~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a 326 (499)
.|++++|+..|++..+.+.. .+.+..++..+...|...|++++|...|++..+.. +-+...+..+..++...|++++|
T Consensus 3 ~g~~~~A~~~~~~al~~~~~-~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A 80 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQ-GKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF-PNHQALRVFYAMVLYNLGRYEQG 80 (117)
T ss_dssp ----CCCHHHHHHHHSSCCC-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCC-CccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHcCCHHHH
Confidence 34455555555555443200 01123344444444444555555555554444432 22333444444444444444444
Q ss_pred HHHHHHHH
Q 036198 327 YKFLEEMG 334 (499)
Q Consensus 327 ~~~~~~m~ 334 (499)
.+.+++..
T Consensus 81 ~~~~~~al 88 (117)
T 3k9i_A 81 VELLLKII 88 (117)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 44444433
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.57 E-value=0.00021 Score=66.45 Aligned_cols=154 Identities=8% Similarity=-0.145 Sum_probs=78.6
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcChhhHHHHHHH
Q 036198 307 VSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISM 386 (499)
Q Consensus 307 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~ 386 (499)
...+..+...+.+.|++++|...|++..... |+... +...++.+++...+ ....|..+..+
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~--p~~~~-------~~~~~~~~~~~~~l----------~~~~~~nla~~ 239 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYM--GDDFM-------FQLYGKYQDMALAV----------KNPCHLNIAAC 239 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHS--CHHHH-------HTCCHHHHHHHHHH----------HTHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHh--ccchh-------hhhcccHHHHHHHH----------HHHHHHHHHHH
Confidence 4556666777778888888888888876542 33221 11223333332221 11367788888
Q ss_pred HHhcCCchHHHHHHHHHhHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHhcCCHHH
Q 036198 387 YFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQ-LSVIGDLGA 465 (499)
Q Consensus 387 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~-~~~~g~~~~ 465 (499)
|.+.|++++|...++...+.. +.+...|..+..+|...|++++|...|++..+.... +...+..+... ....+..++
T Consensus 240 ~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~-~~~a~~~L~~l~~~~~~~~~~ 317 (338)
T 2if4_A 240 LIKLKRYDEAIGHCNIVLTEE-EKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPD-DKAIRRELRALAEQEKALYQK 317 (338)
T ss_dssp HHTTTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------------
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHHHH
Confidence 889999999999998887653 236778888888999999999999999888655421 33444444443 234566777
Q ss_pred HHHHHHHHHhhcChhH
Q 036198 466 IHKLSDHMRKFYNPVI 481 (499)
Q Consensus 466 a~~~~~~m~~~~~~~~ 481 (499)
+.+++.+|.+..+...
T Consensus 318 a~~~~~~~l~~~p~~~ 333 (338)
T 2if4_A 318 QKEMYKGIFKGKDEGG 333 (338)
T ss_dssp ----------------
T ss_pred HHHHHHHhhCCCCCCC
Confidence 8888888877665544
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=97.56 E-value=0.0011 Score=62.32 Aligned_cols=140 Identities=7% Similarity=-0.034 Sum_probs=99.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHH
Q 036198 273 KTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVL 352 (499)
Q Consensus 273 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~ 352 (499)
..+..+...+.+.|++++|...|++..+.- +.. ......+.+. +. -+.+..+|..+..+|
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~--~~~----------~~~~~~~~~~-------~~-~~~~~~~~~nla~~~ 283 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYV--EGS----------RAAAEDADGA-------KL-QPVALSCVLNIGACK 283 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--HHH----------HHHSCHHHHG-------GG-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHh--hcC----------ccccChHHHH-------HH-HHHHHHHHHHHHHHH
Confidence 346666777888888888888888776531 110 0011111111 11 112457888899999
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCcChhhHHHHHHHHHhcCCchHHHHHHHHHhHCCCCCCHHHHHHHHHHHHhCCCHHHHH
Q 036198 353 CDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEAC 432 (499)
Q Consensus 353 ~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~ 432 (499)
.+.|++++|...+++..+.. +.+...+..+..+|...|++++|.+.|++..+.. +-+...+..+...+...++.+++.
T Consensus 284 ~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~-P~~~~~~~~l~~~~~~~~~~~~a~ 361 (370)
T 1ihg_A 284 LKMSDWQGAVDSCLEALEID-PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELLKVKQKIKAQKDKE 361 (370)
T ss_dssp HHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999864 2357788999999999999999999999988763 226667777778888888777765
Q ss_pred HH
Q 036198 433 FL 434 (499)
Q Consensus 433 ~~ 434 (499)
+.
T Consensus 362 k~ 363 (370)
T 1ihg_A 362 KA 363 (370)
T ss_dssp HC
T ss_pred HH
Confidence 43
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=97.50 E-value=0.0034 Score=49.48 Aligned_cols=111 Identities=7% Similarity=-0.085 Sum_probs=51.4
Q ss_pred CHHHHHHHHHHHHHCCCCcChhhHHHHHHHHHhcCCchHHHHHHHHHhHCCCCCCHHHHHHHHHHHHh----CCCHHHHH
Q 036198 357 NGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFD----CSKVEEAC 432 (499)
Q Consensus 357 ~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~a~ 432 (499)
++++|.+.|++..+.|. |+.. |-..|...+..++|.+.|++..+.| +...+..+-..|.. .++.++|.
T Consensus 10 d~~~A~~~~~~aa~~g~-~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~ 81 (138)
T 1klx_A 10 DLKKAIQYYVKACELNE-MFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAA 81 (138)
T ss_dssp HHHHHHHHHHHHHHTTC-TTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred CHHHHHHHHHHHHcCCC-Hhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHH
Confidence 34444555554444441 2211 3333334444444555555544432 33444444444444 45555555
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhhcC
Q 036198 433 FLLEEVVNKGLKLPYRKFDSYLMQLSV----IGDLGAIHKLSDHMRKFYN 478 (499)
Q Consensus 433 ~~~~~m~~~~~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~m~~~~~ 478 (499)
.+|++..+.| +...+..|...|.. .++.++|.+.+++..+...
T Consensus 82 ~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 82 QYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp HHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence 5555555543 33444444444544 4555555555555554433
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.48 E-value=0.00043 Score=64.38 Aligned_cols=148 Identities=9% Similarity=-0.045 Sum_probs=75.7
Q ss_pred HHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHhHHHH
Q 036198 234 NFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEV 313 (499)
Q Consensus 234 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l 313 (499)
...+..+...+.+.|++++|+..|++..... |+... +...++..++...+. ...|..+
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~-----p~~~~-------~~~~~~~~~~~~~l~----------~~~~~nl 236 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYM-----GDDFM-------FQLYGKYQDMALAVK----------NPCHLNI 236 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHS-----CHHHH-------HTCCHHHHHHHHHHH----------THHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHh-----ccchh-------hhhcccHHHHHHHHH----------HHHHHHH
Confidence 4456777888889999999999999988754 33321 112222333222211 1256667
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcC-hhhHHHHHHH-HHhcC
Q 036198 314 LEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPS-VQTYNMLISM-YFELG 391 (499)
Q Consensus 314 l~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~-~~~~~~li~~-~~~~~ 391 (499)
..+|.+.|++++|...++...+... .+...|..+..+|...|++++|...|++..+.. |+ ...+..+... ....+
T Consensus 237 a~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~--p~~~~a~~~L~~l~~~~~~ 313 (338)
T 2if4_A 237 AACLIKLKRYDEAIGHCNIVLTEEE-KNPKALFRRGKAKAELGQMDSARDDFRKAQKYA--PDDKAIRRELRALAEQEKA 313 (338)
T ss_dssp HHHHHTTTCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-----------------------
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHH
Confidence 7777778888888888777766532 256677777777888888888888887776532 33 3344444433 23345
Q ss_pred CchHHHHHHHHHhHC
Q 036198 392 EPDGAFETWHEMDKR 406 (499)
Q Consensus 392 ~~~~a~~~~~~m~~~ 406 (499)
..+++..+|..|...
T Consensus 314 ~~~~a~~~~~~~l~~ 328 (338)
T 2if4_A 314 LYQKQKEMYKGIFKG 328 (338)
T ss_dssp ---------------
T ss_pred HHHHHHHHHHHhhCC
Confidence 566677777777554
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=97.42 E-value=0.0062 Score=47.96 Aligned_cols=110 Identities=8% Similarity=-0.001 Sum_probs=60.6
Q ss_pred CHhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHh----cCCHH
Q 036198 249 MVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCL----AGKVE 324 (499)
Q Consensus 249 ~~~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~----~g~~~ 324 (499)
++++|+++|++..+.| .|... +...|...+..++|.+.|++..+.| +...+..|-..|.. .++++
T Consensus 10 d~~~A~~~~~~aa~~g----~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~ 78 (138)
T 1klx_A 10 DLKKAIQYYVKACELN----EMFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLR 78 (138)
T ss_dssp HHHHHHHHHHHHHHTT----CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHH
T ss_pred CHHHHHHHHHHHHcCC----CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHH
Confidence 4566666666666655 22222 4444445555666666666666553 34455555555555 55666
Q ss_pred HHHHHHHHHHhCCCCCCHhhHHHHHHHHHH----cCCHHHHHHHHHHHHHCC
Q 036198 325 EAYKFLEEMGNKGYPPDIVTYNCFLKVLCD----NKNGDEALRLYGRMIEVG 372 (499)
Q Consensus 325 ~a~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~ 372 (499)
+|.+.|+...+.| +...+..|-..|.. .+++++|...|++..+.|
T Consensus 79 ~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 79 KAAQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 6666666655543 34455555555555 556666666666555544
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=97.41 E-value=0.0018 Score=51.92 Aligned_cols=66 Identities=11% Similarity=0.057 Sum_probs=45.8
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHC-----CCCCC-HHHH----HHHHHHHHhcCCHHHHHHHHHHHHhhcCh
Q 036198 414 TYCVMIDGLFDCSKVEEACFLLEEVVNK-----GLKLP-YRKF----DSYLMQLSVIGDLGAIHKLSDHMRKFYNP 479 (499)
Q Consensus 414 ~~~~li~~~~~~g~~~~a~~~~~~m~~~-----~~~p~-~~~~----~~ll~~~~~~g~~~~a~~~~~~m~~~~~~ 479 (499)
.|..+..++.+.|++++|+..+++.++. .+.|+ ...| .....++...|++++|.+.|++..+..|.
T Consensus 59 a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~ 134 (159)
T 2hr2_A 59 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEE 134 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence 6666777777777777777777777664 11343 4466 77777888888888888888887776443
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=97.40 E-value=0.011 Score=58.83 Aligned_cols=137 Identities=12% Similarity=0.016 Sum_probs=76.5
Q ss_pred HHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcC--CHHHHHHHHHHHHHCCCCcChhhHHHHHHHHHhcC-CchHHHHH
Q 036198 323 VEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNK--NGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELG-EPDGAFET 399 (499)
Q Consensus 323 ~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g--~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~-~~~~a~~~ 399 (499)
++++++.++.+.+.+.+ +..+|+.-.-.+.+.+ +++++.+.++++.+... -+...|+.-...+.+.| .++++.+.
T Consensus 89 ~~~eL~~~~~~l~~~pK-~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d~-~N~~aW~~R~~~l~~l~~~~~~el~~ 166 (567)
T 1dce_A 89 VKAELGFLESCLRVNPK-SYGTWHHRCWLLSRLPEPNWARELELCARFLEADE-RNFHCWDYRRFVAAQAAVAPAEELAF 166 (567)
T ss_dssp HHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcccccHHHHHHHHHHHHhhcc-ccccHHHHHHHHHHHcCCChHHHHHH
Confidence 55555555555554333 4445555555555555 44666666666655432 24455555444555555 55566666
Q ss_pred HHHHhHCCCCCCHHHHHHHHHHHHhC--------------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 036198 400 WHEMDKRGCAQDVDTYCVMIDGLFDC--------------SKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDL 463 (499)
Q Consensus 400 ~~~m~~~~~~p~~~~~~~li~~~~~~--------------g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~ 463 (499)
++++.+.... |..+|+.....+.+. +.++++.+.+++....... +...|..+-..+.+.|..
T Consensus 167 ~~~~I~~~p~-n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~P~-~~saW~y~~~ll~~~~~~ 242 (567)
T 1dce_A 167 TDSLITRNFS-NYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPN-DQSAWFYHRWLLGRAEPH 242 (567)
T ss_dssp HHTTTTTTCC-CHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSS-CSHHHHHHHHHHSCCCCC
T ss_pred HHHHHHHCCC-CccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhhCCC-CccHHHHHHHHHhcCCCc
Confidence 6655554322 445555444444331 4567888888888776533 666777766666666653
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=97.38 E-value=0.0035 Score=50.26 Aligned_cols=65 Identities=15% Similarity=0.012 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCCC-----CH-----HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 036198 234 NFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSP-----TA-----KTYAIMIVALVQNDRMEECFSLLGHMIN 300 (499)
Q Consensus 234 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~p-----~~-----~~~~~ll~~~~~~~~~~~a~~~~~~m~~ 300 (499)
...+......+.+.|++++|+..|++..+.... .| +. ..|..+..++.+.|++++|+..++..++
T Consensus 11 a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~--~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~ 85 (159)
T 2hr2_A 11 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHT--MPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALH 85 (159)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTT--SCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCC--CcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 344566677788888899999988888876521 11 11 2555555555556666665555555554
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=97.28 E-value=0.012 Score=58.55 Aligned_cols=160 Identities=10% Similarity=-0.001 Sum_probs=124.1
Q ss_pred CHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCC----------HHHHHHHHHHHHHCCCCcChhhHHHHHHHHHhcC
Q 036198 322 KVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKN----------GDEALRLYGRMIEVGCWPSVQTYNMLISMYFELG 391 (499)
Q Consensus 322 ~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~----------~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~ 391 (499)
..++|++.++.+...+.. +..+|+.--.++...|+ ++++.+.++.+.+... -+..+|+.-..++.+.+
T Consensus 44 ~~eeal~~~~~~l~~nP~-~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~p-K~y~aW~hR~w~l~~l~ 121 (567)
T 1dce_A 44 LDESVLELTSQILGANPD-FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNP-KSYGTWHHRCWLLSRLP 121 (567)
T ss_dssp CSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTCS
T ss_pred CCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcc
Confidence 346778888888776533 45566665555555565 8999999999998653 46778887777788888
Q ss_pred --CchHHHHHHHHHhHCCCCCCHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc--------
Q 036198 392 --EPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCS-KVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVI-------- 460 (499)
Q Consensus 392 --~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g-~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~-------- 460 (499)
+++++.+.++++.+.... |..+|+.-...+.+.| .++++.+.++++.+..+. +...|+.....+.+.
T Consensus 122 ~~~~~~el~~~~k~l~~d~~-N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~-n~saW~~r~~ll~~l~~~~~~~~ 199 (567)
T 1dce_A 122 EPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQPDSGP 199 (567)
T ss_dssp SCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCC-CHHHHHHHHHHHHHHSCCCCSSS
T ss_pred cccHHHHHHHHHHHHhhccc-cccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCC-CccHHHHHHHHHHhhcccccccc
Confidence 669999999999887543 7888888888888888 899999999999888754 788888877777663
Q ss_pred ------CCHHHHHHHHHHHHhhcChhHHHHH
Q 036198 461 ------GDLGAIHKLSDHMRKFYNPVIARRL 485 (499)
Q Consensus 461 ------g~~~~a~~~~~~m~~~~~~~~~~~~ 485 (499)
+.++++.+++.+..+..|...+.++
T Consensus 200 ~~~~~~~~~~eel~~~~~ai~~~P~~~saW~ 230 (567)
T 1dce_A 200 QGRLPENVLLKELELVQNAFFTDPNDQSAWF 230 (567)
T ss_dssp CCSSCHHHHHHHHHHHHHHHHHCSSCSHHHH
T ss_pred cccccHHHHHHHHHHHHHHHhhCCCCccHHH
Confidence 5578999999999988877655544
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=97.23 E-value=0.0052 Score=43.80 Aligned_cols=80 Identities=8% Similarity=0.052 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHhHHHH
Q 036198 234 NFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEV 313 (499)
Q Consensus 234 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l 313 (499)
...+..+...+...|++++|+..|++..+.. +.+...+..+...+...|++++|...|++..+.. +.+...+..+
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l 83 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD----PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAKQNL 83 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcC----CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCHHHHHHH
Confidence 4455666666666777777777777666653 2345566666666666666666666666666542 2234444444
Q ss_pred HHHHH
Q 036198 314 LEGMC 318 (499)
Q Consensus 314 l~~~~ 318 (499)
..++.
T Consensus 84 ~~~~~ 88 (91)
T 1na3_A 84 GNAKQ 88 (91)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44433
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.20 E-value=0.0016 Score=48.73 Aligned_cols=65 Identities=11% Similarity=0.120 Sum_probs=45.2
Q ss_pred CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 036198 233 DNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINS 301 (499)
Q Consensus 233 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~ 301 (499)
+...+..+...+.+.|++++|++.|++..+.. +.+...+..+..++...|++++|...+++..+.
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~----p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 67 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQ----PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRY 67 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC----CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 44566667777777777777777777777654 345666777777777777777777777777654
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=97.14 E-value=0.0041 Score=46.99 Aligned_cols=77 Identities=13% Similarity=-0.052 Sum_probs=36.6
Q ss_pred HHHHHHHHHHCCCCcChhhHHHHHHHHHhcCCchHHHHHHHHHhHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 036198 361 ALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVV 439 (499)
Q Consensus 361 a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 439 (499)
|...|++..+.. +.+...+..+...|...|++++|...+++..+.. +.+...|..+..+|...|++++|...+++..
T Consensus 4 a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 4 ITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp HHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 444444444432 1234444555555555555555555555554431 1233444455555555555555555555444
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=97.13 E-value=0.0042 Score=46.94 Aligned_cols=77 Identities=10% Similarity=0.044 Sum_probs=37.2
Q ss_pred HHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHH
Q 036198 253 AADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEE 332 (499)
Q Consensus 253 a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~ 332 (499)
|++.|++..+.. +.+...+..+...+...|++++|...|++..+.. +.+...+..+..+|...|++++|...|+.
T Consensus 4 a~~~~~~al~~~----p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 78 (115)
T 2kat_A 4 ITERLEAMLAQG----TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWES 78 (115)
T ss_dssp HHHHHHHHHTTT----CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhC----CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 444444444432 2344455555555555555555555555555432 22334444455555555555555555544
Q ss_pred HH
Q 036198 333 MG 334 (499)
Q Consensus 333 m~ 334 (499)
..
T Consensus 79 al 80 (115)
T 2kat_A 79 GL 80 (115)
T ss_dssp HH
T ss_pred HH
Confidence 43
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.06 E-value=0.0033 Score=46.87 Aligned_cols=64 Identities=9% Similarity=0.039 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 036198 272 AKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNK 336 (499)
Q Consensus 272 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~ 336 (499)
...+..+...+...|++++|...|++..+.. +.+...+..+..++...|++++|.+.++...+.
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 67 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRY 67 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 3445555555555666666666665555442 234445555555555555555555555555543
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=97.03 E-value=0.0089 Score=42.51 Aligned_cols=64 Identities=9% Similarity=0.141 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 036198 272 AKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNK 336 (499)
Q Consensus 272 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~ 336 (499)
...+..+...+...|++++|...|++..+.. +.+...+..+..++...|++++|.+.+++..+.
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 72 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 72 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 3445555555666666666666666655542 223445555555555556666666555555443
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=96.75 E-value=0.0097 Score=43.65 Aligned_cols=64 Identities=20% Similarity=0.184 Sum_probs=44.0
Q ss_pred CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 036198 233 DNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMIN 300 (499)
Q Consensus 233 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~ 300 (499)
+...+..+..+|.+.|++++|+..|++..+.. +.+...|..+..+|...|++++|.+.|++..+
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~----p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETD----PDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS----TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 45566677777777777777777777777664 23455677777777777777777777776654
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=96.74 E-value=0.0085 Score=43.97 Aligned_cols=62 Identities=13% Similarity=0.044 Sum_probs=32.7
Q ss_pred hhhHHHHHHHHHhcCCchHHHHHHHHHhHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 036198 377 VQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVV 439 (499)
Q Consensus 377 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 439 (499)
...+..+..+|...|++++|.+.|++..+... .+...|..+..+|...|++++|...+++..
T Consensus 7 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al 68 (100)
T 3ma5_A 7 PFTRYALAQEHLKHDNASRALALFEELVETDP-DYVGTYYHLGKLYERLDRTDDAIDTYAQGI 68 (100)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34455555555555555555555555554321 133445555555555555555555555544
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=96.68 E-value=0.021 Score=54.68 Aligned_cols=89 Identities=13% Similarity=0.037 Sum_probs=47.4
Q ss_pred HHHHcCCHHHHHHHHHHHHHcC---CCc----CHHhHHHHHHHHHhcCCHHHHHHHHHHHHhC-----C-CCCC-HhhHH
Q 036198 281 ALVQNDRMEECFSLLGHMINSG---CLP----DVSTYKEVLEGMCLAGKVEEAYKFLEEMGNK-----G-YPPD-IVTYN 346 (499)
Q Consensus 281 ~~~~~~~~~~a~~~~~~m~~~~---~~~----~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~-----~-~~p~-~~~~~ 346 (499)
.+.+.|++++|..++++..+.. +.| ...+++.+..+|...|++++|+.++++.... | ..|+ ..+++
T Consensus 296 ~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~ 375 (429)
T 3qwp_A 296 ELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVM 375 (429)
T ss_dssp HHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHH
T ss_pred HHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHH
Confidence 3445556666666666555321 111 1344556666666666666666666554321 1 1122 34566
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHH
Q 036198 347 CFLKVLCDNKNGDEALRLYGRMI 369 (499)
Q Consensus 347 ~li~~~~~~g~~~~a~~~~~~m~ 369 (499)
.|...|...|++++|+.++++..
T Consensus 376 nLa~~~~~~g~~~eA~~~~~~Al 398 (429)
T 3qwp_A 376 KVGKLQLHQGMFPQAMKNLRLAF 398 (429)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHHH
Confidence 66666666666666666666654
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=96.63 E-value=0.0069 Score=48.42 Aligned_cols=39 Identities=8% Similarity=-0.038 Sum_probs=21.4
Q ss_pred hcCCHhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCH
Q 036198 246 KARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRM 288 (499)
Q Consensus 246 ~~g~~~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~ 288 (499)
+.+.+++|.+.++...+.. +.+...|..+..++...+++
T Consensus 14 r~~~feeA~~~~~~Ai~l~----P~~aea~~n~G~~l~~l~~~ 52 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSN----PLDADNLTRWGGVLLELSQF 52 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHhccc
Confidence 3445566666666666554 33555555555555555443
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=96.62 E-value=0.01 Score=56.77 Aligned_cols=62 Identities=10% Similarity=0.055 Sum_probs=29.5
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHhC-----C-CCCC-HhhHHHHHHHHHHcCCHHHHHHHHHHHH
Q 036198 308 STYKEVLEGMCLAGKVEEAYKFLEEMGNK-----G-YPPD-IVTYNCFLKVLCDNKNGDEALRLYGRMI 369 (499)
Q Consensus 308 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~-----~-~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~ 369 (499)
.+++.|..+|...|++++|+.++++..+. | -.|+ ..+++.|...|..+|++++|+.++++..
T Consensus 341 ~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al 409 (433)
T 3qww_A 341 HMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAI 409 (433)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Confidence 34444555555555555555554443221 1 1111 2345555555555555555555555543
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=96.59 E-value=0.0079 Score=48.07 Aligned_cols=101 Identities=14% Similarity=0.009 Sum_probs=60.6
Q ss_pred HcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCC----------HHHHHHHHHHHHhCCCCCCHhhHHHHHHHHH
Q 036198 284 QNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGK----------VEEAYKFLEEMGNKGYPPDIVTYNCFLKVLC 353 (499)
Q Consensus 284 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~----------~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~ 353 (499)
+.+.+++|.+.++...+.. +.+...|..+-.++...++ +++|+..|++.++.+.. +..+|..+..+|.
T Consensus 14 r~~~feeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~-~~~A~~~LG~ay~ 91 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPK-KDEAVWCIGNAYT 91 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHH
Confidence 4455666777777666654 3455666666666665554 34677777776665433 4556666666666
Q ss_pred HcC-----------CHHHHHHHHHHHHHCCCCcChhhHHHHHHHHH
Q 036198 354 DNK-----------NGDEALRLYGRMIEVGCWPSVQTYNMLISMYF 388 (499)
Q Consensus 354 ~~g-----------~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~ 388 (499)
..| ++++|.+.|++..+. .|+...|...+...-
T Consensus 92 ~lg~l~P~~~~a~g~~~eA~~~~~kAl~l--~P~~~~y~~al~~~~ 135 (158)
T 1zu2_A 92 SFAFLTPDETEAKHNFDLATQFFQQAVDE--QPDNTHYLKSLEMTA 135 (158)
T ss_dssp HHHHHCCCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred HhcccCcchhhhhccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHH
Confidence 553 677777777776663 356566655554443
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=96.52 E-value=0.067 Score=49.22 Aligned_cols=135 Identities=10% Similarity=0.023 Sum_probs=61.1
Q ss_pred CCCCHHHHHHHHHHHH--hcC---CHhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHH---cC--CHHHHH---HHHH
Q 036198 230 HAPDNFTYNTAIDTFC--KAR---MVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQ---ND--RMEECF---SLLG 296 (499)
Q Consensus 230 ~~p~~~~~~~li~~~~--~~g---~~~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~---~~--~~~~a~---~~~~ 296 (499)
.+.+...|...+++.. ..+ ...+|..+|++..+.. +-....|..+.-+|.. .+ ...... ..+.
T Consensus 190 ~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lD----P~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~ 265 (372)
T 3ly7_A 190 LPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSS----PEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEID 265 (372)
T ss_dssp SCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhC----CCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHH
Confidence 3446666777665543 223 3578889999988875 2234555544444431 00 000000 0111
Q ss_pred HHHH-cCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 036198 297 HMIN-SGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIE 370 (499)
Q Consensus 297 ~m~~-~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 370 (499)
.... ...+.+..+|..+...+...|++++|...+++....+ |+...|..+...+.-.|++++|.+.|++...
T Consensus 266 a~~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~Alr 338 (372)
T 3ly7_A 266 NIVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFN 338 (372)
T ss_dssp HHHTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 1000 0113334444444444444455555555555544443 3444444444444445555555555544444
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=96.52 E-value=0.046 Score=57.15 Aligned_cols=129 Identities=12% Similarity=0.131 Sum_probs=67.8
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHc
Q 036198 276 AIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDN 355 (499)
Q Consensus 276 ~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 355 (499)
..++..+.+.|.++.|.++.++-. .-.......|+++.|.++.+.+ .+...|..+...+.+.
T Consensus 633 ~~~~~~l~~~~~~~~a~~~~~~~~------------~~f~~~l~~~~~~~A~~~~~~~------~~~~~W~~la~~al~~ 694 (814)
T 3mkq_A 633 TKIARFLEGQEYYEEALNISPDQD------------QKFELALKVGQLTLARDLLTDE------SAEMKWRALGDASLQR 694 (814)
T ss_dssp HHHHHHHHHTTCHHHHHHHCCCHH------------HHHHHHHHHTCHHHHHHHHTTC------CCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCChHHheecCCCcc------------hheehhhhcCCHHHHHHHHHhh------CcHhHHHHHHHHHHHc
Confidence 566666666666666665542111 1123345566666666664332 2456666666666677
Q ss_pred CCHHHHHHHHHHHHHCCCCcChhhHHHHHHHHHhcCCchHHHHHHHHHhHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHH
Q 036198 356 KNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLL 435 (499)
Q Consensus 356 g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~ 435 (499)
|+++.|++.|.++.. |..+...|...|+.+...++-+.....| -++....+|.+.|++++|.+++
T Consensus 695 ~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~~~------~~~~A~~~~~~~g~~~~a~~~~ 759 (814)
T 3mkq_A 695 FNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAETTG------KFNLAFNAYWIAGDIQGAKDLL 759 (814)
T ss_dssp TCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHH
T ss_pred CCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHHHcC------chHHHHHHHHHcCCHHHHHHHH
Confidence 777777666666532 2233444444555555555444444332 1233334444555555555555
Q ss_pred HH
Q 036198 436 EE 437 (499)
Q Consensus 436 ~~ 437 (499)
.+
T Consensus 760 ~~ 761 (814)
T 3mkq_A 760 IK 761 (814)
T ss_dssp HH
T ss_pred HH
Confidence 43
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=96.50 E-value=0.0065 Score=58.08 Aligned_cols=71 Identities=1% Similarity=-0.133 Sum_probs=55.8
Q ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHhhcCCCCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHH
Q 036198 177 INALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADL 256 (499)
Q Consensus 177 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~~~~~la~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~ 256 (499)
..+++.|..+|...|++++|+.++++..+ +++.......+-...+++.|...|...|++++|+.+
T Consensus 340 a~~~~nLa~~y~~~g~~~eA~~~~~~aL~---------------i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~ 404 (433)
T 3qww_A 340 LHMMYQAMGVCLYMQDWEGALKYGQKIIK---------------PYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKA 404 (433)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH---------------HHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHhhcCHHHHHHHHHHHHH---------------HHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHH
Confidence 45899999999999999999999998754 233332222332456789999999999999999999
Q ss_pred HHHHHH
Q 036198 257 FEFMRT 262 (499)
Q Consensus 257 ~~~m~~ 262 (499)
+++..+
T Consensus 405 ~~~Al~ 410 (433)
T 3qww_A 405 LKKAIA 410 (433)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 988765
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=96.33 E-value=0.016 Score=55.40 Aligned_cols=91 Identities=14% Similarity=0.089 Sum_probs=55.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCC---CCC----CHhhHHHHHHHHHHcCCHHHHHHHHHHHHH-----CC-CCcC-hhh
Q 036198 314 LEGMCLAGKVEEAYKFLEEMGNKG---YPP----DIVTYNCFLKVLCDNKNGDEALRLYGRMIE-----VG-CWPS-VQT 379 (499)
Q Consensus 314 l~~~~~~g~~~~a~~~~~~m~~~~---~~p----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-----~~-~~~~-~~~ 379 (499)
+..+.+.|++++|++++++..+.. ..| ...+++.+..+|...|++++|+.++++..+ .| ..|+ ..+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 344556677777777777765431 111 234567777777777777777777776553 12 1122 345
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHh
Q 036198 380 YNMLISMYFELGEPDGAFETWHEMD 404 (499)
Q Consensus 380 ~~~li~~~~~~~~~~~a~~~~~~m~ 404 (499)
++.|...|...|++++|+.++++..
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al 398 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAF 398 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 6667777777777777777666653
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=96.16 E-value=0.13 Score=47.37 Aligned_cols=72 Identities=10% Similarity=-0.063 Sum_probs=40.3
Q ss_pred cChhhHHHHHHHHHhcCCchHHHHHHHHHhHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHH
Q 036198 375 PSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKF 450 (499)
Q Consensus 375 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~ 450 (499)
.+..+|.++...+...|++++|...+++....+ |+...|..+-..+.-.|++++|.+.+++....+ |...+|
T Consensus 275 ~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~--P~~~t~ 346 (372)
T 3ly7_A 275 NLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNLR--PGANTL 346 (372)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CSHHHH
T ss_pred cCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCcChH
Confidence 344555555555555566666666666665543 555555555555556666666666666655543 444443
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=96.15 E-value=0.15 Score=53.17 Aligned_cols=131 Identities=10% Similarity=0.090 Sum_probs=81.0
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHH
Q 036198 236 TYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLE 315 (499)
Q Consensus 236 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~ 315 (499)
....++..+.+.|..++|.++.+. |. .-.......|+++.|+++.+.+ .+...|..+..
T Consensus 631 ~~~~~~~~l~~~~~~~~a~~~~~~----------~~-----~~f~~~l~~~~~~~A~~~~~~~------~~~~~W~~la~ 689 (814)
T 3mkq_A 631 SLTKIARFLEGQEYYEEALNISPD----------QD-----QKFELALKVGQLTLARDLLTDE------SAEMKWRALGD 689 (814)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHCCC----------HH-----HHHHHHHHHTCHHHHHHHHTTC------CCHHHHHHHHH
T ss_pred HHHHHHHHHHhCCChHHheecCCC----------cc-----hheehhhhcCCHHHHHHHHHhh------CcHhHHHHHHH
Confidence 346666667777777777665521 11 1133456789999998886443 46788999999
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcChhhHHHHHHHHHhcCCchH
Q 036198 316 GMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDG 395 (499)
Q Consensus 316 ~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~ 395 (499)
.+.+.|+++.|.+.|..+.. |..+...+...|+.+...++-+.....| -++....+|.+.|++++
T Consensus 690 ~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~~~------~~~~A~~~~~~~g~~~~ 754 (814)
T 3mkq_A 690 ASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAETTG------KFNLAFNAYWIAGDIQG 754 (814)
T ss_dssp HHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHHHTT------CHHHHHHHHHHHTCHHH
T ss_pred HHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHHHcC------chHHHHHHHHHcCCHHH
Confidence 99999999999999987743 3345555555677666555554444433 12223333444555555
Q ss_pred HHHHHHH
Q 036198 396 AFETWHE 402 (499)
Q Consensus 396 a~~~~~~ 402 (499)
|.+++.+
T Consensus 755 a~~~~~~ 761 (814)
T 3mkq_A 755 AKDLLIK 761 (814)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5554433
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.99 E-value=0.22 Score=40.42 Aligned_cols=131 Identities=15% Similarity=0.164 Sum_probs=86.6
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcChhhHHHHHHHHHhcCCc
Q 036198 314 LEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEP 393 (499)
Q Consensus 314 l~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~ 393 (499)
.......|+++.|.++.+.+ -+...|..|.......|+++-|++.|..... +..+.-.|.-.|+.
T Consensus 12 F~LAL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~ 76 (177)
T 3mkq_B 12 FDLALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDV 76 (177)
T ss_dssp HHHHHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCH
T ss_pred HHHHHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCH
Confidence 34556788888888887765 3678888888888888888888888877642 33444455567777
Q ss_pred hHHHHHHHHHhHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 036198 394 DGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHM 473 (499)
Q Consensus 394 ~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m 473 (499)
++..++-+.....| -++.....+.-.|+++++.++|.+ .|-.|-... .....|-.+.|.++.+.+
T Consensus 77 e~L~kla~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~---~~r~~eA~~------~A~t~g~~~~a~~~~~~~ 141 (177)
T 3mkq_B 77 NKLSKMQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAE---GGSLPLAYA------VAKANGDEAAASAFLEQA 141 (177)
T ss_dssp HHHHHHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHH---TTCHHHHHH------HHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHH---CCChHHHHH------HHHHcCcHHHHHHHHHHh
Confidence 77776666555443 256666667778888888888844 332221111 122356677777777665
Q ss_pred H
Q 036198 474 R 474 (499)
Q Consensus 474 ~ 474 (499)
.
T Consensus 142 ~ 142 (177)
T 3mkq_B 142 E 142 (177)
T ss_dssp T
T ss_pred C
Confidence 3
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=95.92 E-value=0.072 Score=38.32 Aligned_cols=68 Identities=10% Similarity=0.011 Sum_probs=34.6
Q ss_pred CHHHHHHHHHHHHhCCC---HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCh
Q 036198 411 DVDTYCVMIDGLFDCSK---VEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHMRKFYNP 479 (499)
Q Consensus 411 ~~~~~~~li~~~~~~g~---~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~ 479 (499)
|...+..+..++...++ .++|..++++.++.... +......+...+.+.|++++|...|+++.+..++
T Consensus 5 ~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~-~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~ 75 (93)
T 3bee_A 5 TATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPY-NEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP 75 (93)
T ss_dssp CHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 44444444444433222 45555555555554422 4445555555555555555555555555555554
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=95.71 E-value=0.49 Score=36.13 Aligned_cols=65 Identities=14% Similarity=-0.016 Sum_probs=35.5
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCh
Q 036198 414 TYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHMRKFYNP 479 (499)
Q Consensus 414 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~ 479 (499)
.+...++.+...|+-++..+++.++... -+|++...-.+..||.+.|+..+|.+++.+..+.+.+
T Consensus 93 ~vd~ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 93 HVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 3444455555566666666665554332 2455555556666666666666666666665555443
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=95.70 E-value=0.14 Score=40.42 Aligned_cols=84 Identities=12% Similarity=0.010 Sum_probs=47.9
Q ss_pred HHHHHHHHHhHCCCCCCHHHHHHHHHHHHhCC---CHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCCHHHHHHH
Q 036198 395 GAFETWHEMDKRGCAQDVDTYCVMIDGLFDCS---KVEEACFLLEEVVNKGLKL--PYRKFDSYLMQLSVIGDLGAIHKL 469 (499)
Q Consensus 395 ~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g---~~~~a~~~~~~m~~~~~~p--~~~~~~~ll~~~~~~g~~~~a~~~ 469 (499)
.+.+-|.+..+.|. ++..+.-.+..++++++ +++++..++++..+.+ .| ....+..+.-+|.+.|++++|.++
T Consensus 16 ~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~~y 93 (152)
T 1pc2_A 16 KFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKALKY 93 (152)
T ss_dssp HHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHHHH
Confidence 34444544444433 45555556666666666 4556666666666554 22 234444555566667777777777
Q ss_pred HHHHHhhcChh
Q 036198 470 SDHMRKFYNPV 480 (499)
Q Consensus 470 ~~~m~~~~~~~ 480 (499)
++.+.+..|..
T Consensus 94 ~~~lL~ieP~n 104 (152)
T 1pc2_A 94 VRGLLQTEPQN 104 (152)
T ss_dssp HHHHHHHCTTC
T ss_pred HHHHHhcCCCC
Confidence 77666665543
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=95.65 E-value=0.09 Score=37.90 Aligned_cols=58 Identities=12% Similarity=0.082 Sum_probs=38.9
Q ss_pred HHHHHHhcCCHhHHHHHHHHHHHcCCCCCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 036198 240 AIDTFCKARMVTEAADLFEFMRTKGSTISSPTAK-TYAIMIVALVQNDRMEECFSLLGHMINS 301 (499)
Q Consensus 240 li~~~~~~g~~~~a~~~~~~m~~~~~~~~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~m~~~ 301 (499)
....+.+.|++++|++.|++..+.. +.+.. .+..+..++...|++++|...|++..+.
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~----p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 64 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTE----PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC----SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC----CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 3445666777777777777776654 23455 6666777777777777777777777665
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.52 E-value=0.6 Score=37.80 Aligned_cols=81 Identities=14% Similarity=0.188 Sum_probs=43.5
Q ss_pred CHHHHHHHHHHHHhCCChHHHHHHHHHhhcCCCCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHH
Q 036198 176 EINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAAD 255 (499)
Q Consensus 176 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~~~~~la~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~ 255 (499)
+...|..|.......|+++-|++.|.+..+ |..+.-.|.-.|+.+...+
T Consensus 33 ~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D-------------------------------~~~L~~Ly~~tg~~e~L~k 81 (177)
T 3mkq_B 33 DSITWERLIQEALAQGNASLAEMIYQTQHS-------------------------------FDKLSFLYLVTGDVNKLSK 81 (177)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHTTC-------------------------------HHHHHHHHHHHTCHHHHHH
T ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHhCC-------------------------------HHHHHHHHHHhCCHHHHHH
Confidence 344666666666666666666666665543 3334444445555555555
Q ss_pred HHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 036198 256 LFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLG 296 (499)
Q Consensus 256 ~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 296 (499)
+-+....+| -++.....+.-.|+++++.++|.
T Consensus 82 la~iA~~~g---------~~n~af~~~l~lGdv~~~i~lL~ 113 (177)
T 3mkq_B 82 MQNIAQTRE---------DFGSMLLNTFYNNSTKERSSIFA 113 (177)
T ss_dssp HHHHHHHTT---------CHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHCc---------cHHHHHHHHHHcCCHHHHHHHHH
Confidence 444444443 13344444555566666655553
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=95.40 E-value=0.078 Score=38.27 Aligned_cols=59 Identities=14% Similarity=0.167 Sum_probs=41.8
Q ss_pred HHHHHHhcCCchHHHHHHHHHhHCCCCCCHH-HHHHHHHHHHhCCCHHHHHHHHHHHHHCC
Q 036198 383 LISMYFELGEPDGAFETWHEMDKRGCAQDVD-TYCVMIDGLFDCSKVEEACFLLEEVVNKG 442 (499)
Q Consensus 383 li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~-~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 442 (499)
....+...|++++|.+.++...+.. +.+.. .+..+..+|...|++++|...|++..+..
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 65 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTE-PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELN 65 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 3455667788888888888776642 22445 67777777778888888888888877665
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=95.30 E-value=0.7 Score=35.30 Aligned_cols=144 Identities=16% Similarity=0.145 Sum_probs=82.3
Q ss_pred HHHHHH--HHhcCCHhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHh---HHH
Q 036198 238 NTAIDT--FCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVST---YKE 312 (499)
Q Consensus 238 ~~li~~--~~~~g~~~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~---~~~ 312 (499)
..||.+ +.-.|.+++..++..+..... +..-||-+|--....-+-+-..++++.+-+. .|... ...
T Consensus 9 kkLmeAK~~ildG~v~qGveii~k~~~ss------ni~E~NW~ICNiiD~a~C~y~v~vLd~IGki---FDis~C~NlKr 79 (172)
T 1wy6_A 9 RKLMDAKKFLLDGYIDEGVKIVLEITKSS------TKSEYNWFICNLLESIDCRYMFQVLDKIGSY---FDLDKCQNLKS 79 (172)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS------CHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG---SCGGGCSCTHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHcCCC------CccccceeeeecchhhchhHHHHHHHHHhhh---cCcHhhhcHHH
Confidence 344443 345688888888888887654 4555666666556666666666666655432 22211 122
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcChhhHHHHHHHHHhcCC
Q 036198 313 VLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGE 392 (499)
Q Consensus 313 ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~ 392 (499)
++.+|.+.+. +.......+..+..+|.-+.-.+++..+.. +.+|+....-.+..+|.+.|+
T Consensus 80 Vi~C~~~~n~------------------~se~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~ 140 (172)
T 1wy6_A 80 VVECGVINNT------------------LNEHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGD 140 (172)
T ss_dssp HHHHHHHTTC------------------CCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhcc------------------hHHHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcc
Confidence 3333333321 344555556666666666666666666433 234556666666666666666
Q ss_pred chHHHHHHHHHhHCCCC
Q 036198 393 PDGAFETWHEMDKRGCA 409 (499)
Q Consensus 393 ~~~a~~~~~~m~~~~~~ 409 (499)
..+|.+++.+.-+.|++
T Consensus 141 ~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 141 ERDATTLLIEACKKGEK 157 (172)
T ss_dssp HHHHHHHHHHHHHTTCH
T ss_pred hhhHHHHHHHHHHhhhH
Confidence 66666666666666643
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=95.05 E-value=0.29 Score=35.91 Aligned_cols=65 Identities=6% Similarity=0.031 Sum_probs=34.0
Q ss_pred hhhHHHHHHHHHhcCCchHHHHHHHHHhHC------CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHC
Q 036198 377 VQTYNMLISMYFELGEPDGAFETWHEMDKR------GCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNK 441 (499)
Q Consensus 377 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~------~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 441 (499)
..-+..|...+.+.|+++.|...++...+. +-.+....+..+..++.+.|++++|..++++..+.
T Consensus 5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l 75 (104)
T 2v5f_A 5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (104)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 334445555555666666666666554432 01123445555555555666666666665555543
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=94.95 E-value=0.39 Score=34.35 Aligned_cols=65 Identities=11% Similarity=0.047 Sum_probs=38.8
Q ss_pred CHHHHHHHHHHHHhcCC---HhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 036198 233 DNFTYNTAIDTFCKARM---VTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINS 301 (499)
Q Consensus 233 ~~~~~~~li~~~~~~g~---~~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~ 301 (499)
+...+..+..++...++ .++|..++++..+.. +-+..+...+...+.+.|++++|...|+.+.+.
T Consensus 5 ~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~d----p~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~ 72 (93)
T 3bee_A 5 TATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLE----PYNEAALSLIANDHFISFRFQEAIDTWVLLLDS 72 (93)
T ss_dssp CHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHC----cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 45555555555543333 566666666666654 334556666666666666666666666666654
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=94.82 E-value=0.18 Score=44.47 Aligned_cols=110 Identities=16% Similarity=0.165 Sum_probs=73.6
Q ss_pred HHHHHHHHHHHHHCCCCcC---hhhHHHHHHHHHhc-----CCchHHHHHHHHHhHCCCCCCHHHHHHHHHHHHhC-CCH
Q 036198 358 GDEALRLYGRMIEVGCWPS---VQTYNMLISMYFEL-----GEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDC-SKV 428 (499)
Q Consensus 358 ~~~a~~~~~~m~~~~~~~~---~~~~~~li~~~~~~-----~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~-g~~ 428 (499)
...|...+++..+.. |+ ...|..+...|... |+.++|.+.|++..+.+..-+..++....+.++.. |+.
T Consensus 179 l~~A~a~lerAleLD--P~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~ 256 (301)
T 3u64_A 179 VHAAVMMLERACDLW--PSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNR 256 (301)
T ss_dssp HHHHHHHHHHHHHHC--TTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCH
T ss_pred HHHHHHHHHHHHHhC--CCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCH
Confidence 355666677766643 44 45777777778774 88888888888887753222366777777777774 888
Q ss_pred HHHHHHHHHHHHCCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhc
Q 036198 429 EEACFLLEEVVNKGLK--LPYRKFDSYLMQLSVIGDLGAIHKLSDHMRKFY 477 (499)
Q Consensus 429 ~~a~~~~~~m~~~~~~--p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~ 477 (499)
+++.+.+++.+..... |+....+. +.-++|..++.++...|
T Consensus 257 ~~a~~~L~kAL~a~p~~~P~~~lan~--------~~q~eA~~LL~~~~d~F 299 (301)
T 3u64_A 257 AGFDEALDRALAIDPESVPHNKLLVI--------LSQKRARWLKAHVQDFF 299 (301)
T ss_dssp HHHHHHHHHHHHCCGGGCSSCHHHHH--------HHHHHHHHHHHTHHHHC
T ss_pred HHHHHHHHHHHcCCCCCCCChhHHHH--------HHHHHHHHHHHHhHHhc
Confidence 8888888888887666 55443333 33456666666665554
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=94.17 E-value=0.6 Score=34.11 Aligned_cols=26 Identities=8% Similarity=0.120 Sum_probs=11.6
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHH
Q 036198 309 TYKEVLEGMCLAGKVEEAYKFLEEMG 334 (499)
Q Consensus 309 ~~~~ll~~~~~~g~~~~a~~~~~~m~ 334 (499)
.+..+..++.+.|+++.|...+++..
T Consensus 48 i~~~L~~~~~~~g~~~~A~~~~~~al 73 (104)
T 2v5f_A 48 VLDYLSYAVYQQGDLDKALLLTKKLL 73 (104)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 34444444444444444444444443
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=94.07 E-value=1.5 Score=34.20 Aligned_cols=114 Identities=17% Similarity=0.158 Sum_probs=74.6
Q ss_pred CHhhHHHHHHHHHHcCCH------HHHHHHHHHHHHCCCCcChh-hHHHHHHH------HHhcCCchHHHHHHHHHhHCC
Q 036198 341 DIVTYNCFLKVLCDNKNG------DEALRLYGRMIEVGCWPSVQ-TYNMLISM------YFELGEPDGAFETWHEMDKRG 407 (499)
Q Consensus 341 ~~~~~~~li~~~~~~g~~------~~a~~~~~~m~~~~~~~~~~-~~~~li~~------~~~~~~~~~a~~~~~~m~~~~ 407 (499)
|..+|-..+...-+.|++ ++..++|++.... ++|+.. .|...+.. +...++.++|.++|+.+.+.+
T Consensus 12 ~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~h 90 (161)
T 4h7y_A 12 NPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARANC 90 (161)
T ss_dssp SHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh
Confidence 566677777777667777 7777888877763 445421 11111111 123478999999999987653
Q ss_pred CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 036198 408 CAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQL 457 (499)
Q Consensus 408 ~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~ 457 (499)
-+- ...|-....-=.+.|+++.|.+++......+.+ +...+...++-+
T Consensus 91 KkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k-~~~~le~a~~nl 138 (161)
T 4h7y_A 91 KKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAV-PLEMLEIALRNL 138 (161)
T ss_dssp TTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB-CHHHHHHHHHHH
T ss_pred HHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCC-cHHHHHHHHHhh
Confidence 333 566666666666899999999999999988865 455555555433
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=93.68 E-value=0.7 Score=36.40 Aligned_cols=81 Identities=16% Similarity=0.153 Sum_probs=39.0
Q ss_pred hHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHcCCCc--CHHhHHHHHHHHHhcCCHHH
Q 036198 251 TEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQND---RMEECFSLLGHMINSGCLP--DVSTYKEVLEGMCLAGKVEE 325 (499)
Q Consensus 251 ~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~---~~~~a~~~~~~m~~~~~~~--~~~~~~~ll~~~~~~g~~~~ 325 (499)
..+.+-|.+..+.+ .++..+...+..++++++ +.+++..++++..+.. .| +...+-.+.-+|.+.|++++
T Consensus 15 ~~~~~~y~~e~~~~----~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~ 89 (152)
T 1pc2_A 15 LKFEKKFQSEKAAG----SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEK 89 (152)
T ss_dssp HHHHHHHHHHHHTT----CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHH
T ss_pred HHHHHHHHHHHccC----CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHH
Confidence 33444444444443 245555555555555555 3445555555555543 12 12233334444555555555
Q ss_pred HHHHHHHHHhC
Q 036198 326 AYKFLEEMGNK 336 (499)
Q Consensus 326 a~~~~~~m~~~ 336 (499)
|.+.++.+.+.
T Consensus 90 A~~y~~~lL~i 100 (152)
T 1pc2_A 90 ALKYVRGLLQT 100 (152)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhc
Confidence 55555555543
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=93.09 E-value=0.47 Score=35.99 Aligned_cols=84 Identities=12% Similarity=-0.025 Sum_probs=43.3
Q ss_pred chHHHHHHHHHhHCCCCCCHHHHHHHHHHHHhCCCHHH---HHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCCHHHHH
Q 036198 393 PDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEE---ACFLLEEVVNKGLKL--PYRKFDSYLMQLSVIGDLGAIH 467 (499)
Q Consensus 393 ~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~---a~~~~~~m~~~~~~p--~~~~~~~ll~~~~~~g~~~~a~ 467 (499)
+..+.+-|......|. |+..+--.+..+++++..... +..++.+....+ .| .......+.-++.+.|++++|.
T Consensus 17 l~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg~Y~~A~ 94 (126)
T 1nzn_A 17 LLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKAL 94 (126)
T ss_dssp HHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhhhHHHHH
Confidence 3344444444433332 455555555555665554443 556666555543 12 2233334445666666666666
Q ss_pred HHHHHHHhhcC
Q 036198 468 KLSDHMRKFYN 478 (499)
Q Consensus 468 ~~~~~m~~~~~ 478 (499)
++++.+.+..|
T Consensus 95 ~~~~~lL~~eP 105 (126)
T 1nzn_A 95 KYVRGLLQTEP 105 (126)
T ss_dssp HHHHHHHHHCT
T ss_pred HHHHHHHHhCC
Confidence 66666666544
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=93.01 E-value=1.2 Score=39.32 Aligned_cols=93 Identities=12% Similarity=0.110 Sum_probs=71.7
Q ss_pred HhHHHHHHHHHHHcCCCCCCCC---HHHHHHHHHHHHH-----cCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhc-
Q 036198 250 VTEAADLFEFMRTKGSTISSPT---AKTYAIMIVALVQ-----NDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLA- 320 (499)
Q Consensus 250 ~~~a~~~~~~m~~~~~~~~~p~---~~~~~~ll~~~~~-----~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~- 320 (499)
...|...+++..+.. |+ ...|..+...|.. .|+.++|.+.|++..+.+-.-+..++....+.++..
T Consensus 179 l~~A~a~lerAleLD-----P~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~ 253 (301)
T 3u64_A 179 VHAAVMMLERACDLW-----PSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPL 253 (301)
T ss_dssp HHHHHHHHHHHHHHC-----TTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTT
T ss_pred HHHHHHHHHHHHHhC-----CCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhc
Confidence 567888888888865 44 6688899999988 499999999999999875222467777788888884
Q ss_pred CCHHHHHHHHHHHHhCCCC--CCHhhHHH
Q 036198 321 GKVEEAYKFLEEMGNKGYP--PDIVTYNC 347 (499)
Q Consensus 321 g~~~~a~~~~~~m~~~~~~--p~~~~~~~ 347 (499)
|+.+++.+.+++....... |+....+.
T Consensus 254 gd~~~a~~~L~kAL~a~p~~~P~~~lan~ 282 (301)
T 3u64_A 254 NNRAGFDEALDRALAIDPESVPHNKLLVI 282 (301)
T ss_dssp TCHHHHHHHHHHHHHCCGGGCSSCHHHHH
T ss_pred CCHHHHHHHHHHHHcCCCCCCCChhHHHH
Confidence 9999999999999887665 55444333
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=92.58 E-value=2.4 Score=33.12 Aligned_cols=31 Identities=3% Similarity=-0.041 Sum_probs=21.4
Q ss_pred CHHHHHHHHHHHHhcCCH------hHHHHHHHHHHHc
Q 036198 233 DNFTYNTAIDTFCKARMV------TEAADLFEFMRTK 263 (499)
Q Consensus 233 ~~~~~~~li~~~~~~g~~------~~a~~~~~~m~~~ 263 (499)
|..+|-..+...-+.|+. ++..++|++....
T Consensus 12 ~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~ 48 (161)
T 4h7y_A 12 NPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA 48 (161)
T ss_dssp SHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc
Confidence 566677777777666777 6777777766665
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=91.64 E-value=3 Score=39.03 Aligned_cols=129 Identities=12% Similarity=0.024 Sum_probs=67.8
Q ss_pred CHHHHHHHHHHH---HhcCCHhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHH-HHHHHHHHHHHcCCCcCHH
Q 036198 233 DNFTYNTAIDTF---CKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRME-ECFSLLGHMINSGCLPDVS 308 (499)
Q Consensus 233 ~~~~~~~li~~~---~~~g~~~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~-~a~~~~~~m~~~~~~~~~~ 308 (499)
|...|..++... ...|+.+.|.+.+++....-....-++.. ...|- ....-++++. ..
T Consensus 111 D~~~f~~l~~~~~~~~~~~~~~~a~~~l~~Al~L~rG~~L~~~~-----------~~~w~~~~r~~l~~~~-------~~ 172 (388)
T 2ff4_A 111 DLGRFVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLR-----------DFQFVEPFATALVEDK-------VL 172 (388)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGT-----------TSTTHHHHHHHHHHHH-------HH
T ss_pred hHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCCCCC-----------chhHHHHHHHHHHHHH-------HH
Confidence 555565555443 34588888888888887643110111110 01111 1111111111 11
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHH-----CCCCcChhhH
Q 036198 309 TYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIE-----VGCWPSVQTY 380 (499)
Q Consensus 309 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-----~~~~~~~~~~ 380 (499)
....++..+...|++++|...+..+.... +.+...|..+|.++.+.|+..+|.+.|+.+.+ .|+.|+..+-
T Consensus 173 a~~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~ 248 (388)
T 2ff4_A 173 AHTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLR 248 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHH
Confidence 22335566666677777766666665442 23556667777777777777777776666542 3666665543
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=90.80 E-value=2.3 Score=30.46 Aligned_cols=62 Identities=19% Similarity=0.198 Sum_probs=48.7
Q ss_pred hcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHhhcCCCCChhhHHHHHHHHHHHHHHcCCC
Q 036198 170 KVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQTLEEMIQMGHA 231 (499)
Q Consensus 170 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~~~~~la~~~~~~m~~~g~~ 231 (499)
...+.|+..+..+.+++|-+.+++.-|.++|+-++.++.+....|..+..++=--+.+.|++
T Consensus 38 ~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~~~~~iY~~~lqElkPtl~ELGI~ 99 (109)
T 1v54_E 38 GYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVIQELRPTLNELGIS 99 (109)
T ss_dssp TSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHHHHHTCC
T ss_pred ccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCchhhHHHHHHHHhhHHHHhCCC
Confidence 34578999999999999999999999999999999876666555766655555555555664
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=90.55 E-value=11 Score=35.11 Aligned_cols=124 Identities=10% Similarity=0.035 Sum_probs=72.7
Q ss_pred CHHHHHHHHHHHH---hCCChHHHHHHHHHhhcC----CCCChh--hHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 036198 176 EINALNLLLDALC---KCGLVDYAETICKRVKNK----VKPNAN--TYNILGMQTLEEMIQMGHAPDNFTYNTAIDTFCK 246 (499)
Q Consensus 176 ~~~~~~~li~~~~---~~g~~~~A~~~~~~m~~~----~~p~~~--~~~~la~~~~~~m~~~g~~p~~~~~~~li~~~~~ 246 (499)
|...|..++.... ..|+.+.|.+.+++...- .-++.. .|..-...-++++. ..+...++..+..
T Consensus 111 D~~~f~~l~~~~~~~~~~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~-------~~a~~~~~~~~l~ 183 (388)
T 2ff4_A 111 DLGRFVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDK-------VLAHTAKAEAEIA 183 (388)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHH-------HHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHH-------HHHHHHHHHHHHH
Confidence 4555666655433 458899998888887652 222221 12111111122211 1123445666677
Q ss_pred cCCHhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----cCCCcCHHhH
Q 036198 247 ARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMIN-----SGCLPDVSTY 310 (499)
Q Consensus 247 ~g~~~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~-----~~~~~~~~~~ 310 (499)
.|++++|...+..+.... +.+...|..+|.++.+.|+..+|++.|+.+.+ .|+.|+..+-
T Consensus 184 ~g~~~~a~~~l~~~~~~~----P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~ 248 (388)
T 2ff4_A 184 CGRASAVIAELEALTFEH----PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLR 248 (388)
T ss_dssp TTCHHHHHHHHHHHHHHS----TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHH
T ss_pred CCCHHHHHHHHHHHHHhC----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHH
Confidence 777777777777776654 45667777777777777777777777776643 3677766543
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=90.55 E-value=14 Score=40.12 Aligned_cols=146 Identities=10% Similarity=0.067 Sum_probs=88.8
Q ss_pred CCHHHHHHHHHHHHhCCChHHHHHHHHHhhcCCCCChhhHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHhcCCHhH
Q 036198 175 PEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQTLEEMIQMGH--APDNFTYNTAIDTFCKARMVTE 252 (499)
Q Consensus 175 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~~~~~la~~~~~~m~~~g~--~p~~~~~~~li~~~~~~g~~~~ 252 (499)
.+...--.+..+|...|++++|.+.|.+...++..+......+ .-+..+..... ..-..=|..++..+-+.|.++.
T Consensus 840 ~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~--~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~ 917 (1139)
T 4fhn_B 840 SDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVL--REFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYID 917 (1139)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSH--HHHHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHH
T ss_pred CCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhh--cccccccccccccccHHHHHHHHHHHHHHcCCHHH
Confidence 3444444566788899999999999998765543332221111 01111221111 1123346778888888888888
Q ss_pred HHHHHHHHHHcCCCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHH
Q 036198 253 AADLFEFMRTKGSTISSPT--AKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEE 325 (499)
Q Consensus 253 a~~~~~~m~~~~~~~~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~ 325 (499)
+.++-....+.... ..++ ...|..+.+++...|++++|...+-.+..... -......++..+|..|+.+.
T Consensus 918 vi~fa~lAi~~~~~-~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~--r~~cLr~LV~~lce~~~~~~ 989 (1139)
T 4fhn_B 918 ALEFSLLADASKET-DDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPL--KKSCLLDFVNQLTKQGKINQ 989 (1139)
T ss_dssp HHHHHHHHHHHCCS-CCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSS--CHHHHHHHHHHHHHHCCHHH
T ss_pred HHHHHHHHHHhccC-CChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHH--HHHHHHHHHHHHHhCCChhh
Confidence 88887776654311 1111 22577788888888888888888877765533 34456666666666665443
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=90.17 E-value=2 Score=32.47 Aligned_cols=22 Identities=14% Similarity=0.067 Sum_probs=11.2
Q ss_pred HHHHHHcCCHHHHHHHHHHHHH
Q 036198 349 LKVLCDNKNGDEALRLYGRMIE 370 (499)
Q Consensus 349 i~~~~~~g~~~~a~~~~~~m~~ 370 (499)
.-++.+.|++++|.+.++.+.+
T Consensus 81 Avg~yklg~Y~~A~~~~~~lL~ 102 (126)
T 1nzn_A 81 AVGNYRLKEYEKALKYVRGLLQ 102 (126)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhhhHHHHHHHHHHHHH
Confidence 3344455555555555555544
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=89.17 E-value=2.3 Score=43.39 Aligned_cols=52 Identities=8% Similarity=-0.108 Sum_probs=36.3
Q ss_pred HHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 036198 421 GLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHM 473 (499)
Q Consensus 421 ~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m 473 (499)
-|...|+++-|+++.++....- +-+..+|..|..+|...|+++.|+-.++.+
T Consensus 346 FLl~K~~~elAL~~Ak~AV~~a-PseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 346 FLLNRGDYELALGVSNTSTELA-LDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHhccCcHHHHHHHHHHHHhcC-chhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 3445677777777777776654 235667777777777777777777777666
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=89.09 E-value=21 Score=36.38 Aligned_cols=56 Identities=5% Similarity=0.007 Sum_probs=49.0
Q ss_pred HHHHHHhcCCHhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 036198 240 AIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMI 299 (499)
Q Consensus 240 li~~~~~~g~~~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~ 299 (499)
=...|...|+++.|+++-++..... +-+-.+|..|..+|...|+++.|+-.++.+.
T Consensus 343 Qa~FLl~K~~~elAL~~Ak~AV~~a----PseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 343 QTNFLLNRGDYELALGVSNTSTELA----LDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC----SSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HHHHHhccCcHHHHHHHHHHHHhcC----chhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 3456778999999999999998874 5568999999999999999999999998873
|
| >2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus} | Back alignment and structure |
|---|
Probab=87.19 E-value=4.9 Score=30.56 Aligned_cols=63 Identities=19% Similarity=0.211 Sum_probs=50.4
Q ss_pred hhcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHhhcCCCCChhhHHHHHHHHHHHHHHcCCC
Q 036198 169 IKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQTLEEMIQMGHA 231 (499)
Q Consensus 169 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~~~~~la~~~~~~m~~~g~~ 231 (499)
....+.|+..+..+.+++|-+.+++.-|..+|+-++.++.+....|..+..++=--+.+.|++
T Consensus 80 ~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~~~~~~iY~y~lqElkPtl~ELGI~ 142 (152)
T 2y69_E 80 VGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVIQELRPTLNELGIS 142 (152)
T ss_dssp TTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHHHHHTCC
T ss_pred hccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCchhhHHHHHHHHhhHHHHhCCC
Confidence 445688999999999999999999999999999999876666666776655555555566664
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=87.04 E-value=16 Score=39.73 Aligned_cols=190 Identities=11% Similarity=0.013 Sum_probs=114.1
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhC----CC----------------
Q 036198 279 IVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNK----GY---------------- 338 (499)
Q Consensus 279 l~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~----~~---------------- 338 (499)
+..+...+..+.+.++.... +.+...--.+..+|...|++++|.+.|.+.... +.
T Consensus 819 ~~~l~~~~~~~~~~~l~~~~-----~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~ 893 (1139)
T 4fhn_B 819 VEKLFLFKQYNACMQLIGWL-----NSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYH 893 (1139)
T ss_dssp HHHHHHHSCTTHHHHHHHHS-----CCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTT
T ss_pred HHHHHHhhhHHHHHHHhhhc-----cCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhccccccccccc
Confidence 33344445544444433221 234444445667888999999999999764211 00
Q ss_pred --CCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcC----hhhHHHHHHHHHhcCCchHHHHHHHHHhHCCCCCCH
Q 036198 339 --PPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPS----VQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDV 412 (499)
Q Consensus 339 --~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~ 412 (499)
..-..-|..++..+.+.+.++.+.++-....+....-+ ...|..+++++...|++++|...+-.+.+...+ .
T Consensus 894 ~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~r--~ 971 (1139)
T 4fhn_B 894 HQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPLK--K 971 (1139)
T ss_dssp SCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSSC--H
T ss_pred ccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHHH--H
Confidence 00123467788889999999999988887765422111 226888999999999999999999988876443 4
Q ss_pred HHHHHHHHHHHhCCCHHH------------HHHHHHHHH-HC-CCCCCHHHHHHHH-HHHHhcCCHHH-HHHHHHHHHhh
Q 036198 413 DTYCVMIDGLFDCSKVEE------------ACFLLEEVV-NK-GLKLPYRKFDSYL-MQLSVIGDLGA-IHKLSDHMRKF 476 (499)
Q Consensus 413 ~~~~~li~~~~~~g~~~~------------a~~~~~~m~-~~-~~~p~~~~~~~ll-~~~~~~g~~~~-a~~~~~~m~~~ 476 (499)
.....++..+|..|..+. +.+++..-- .. .+...+ .|..++ .=+...||+.+ |.-+|+.+.+.
T Consensus 972 ~cLr~LV~~lce~~~~~~L~~lpf~gl~~~Vd~IL~~kAr~~~~~~~~p-~Yy~iLYs~ri~r~dyR~AA~vmYe~~~RL 1050 (1139)
T 4fhn_B 972 SCLLDFVNQLTKQGKINQLLNYSMPTLRQDVDNLLERKAFQMINVESQP-CWYNILFSWRYKHQNYRDAAAIIYEKLSRY 1050 (1139)
T ss_dssp HHHHHHHHHHHHHCCHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHCCST-HHHHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCChhhhhCCCCccHHHHHHHHHHHHHHhCCccccCC-CHHHHhHhhhhccCChHHHHHHHHHHHHHh
Confidence 577788887877665544 334433211 11 111111 233444 33355677664 45556666554
|
| >3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A | Back alignment and structure |
|---|
Probab=86.77 E-value=20 Score=33.33 Aligned_cols=165 Identities=10% Similarity=-0.036 Sum_probs=86.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCCc---CHHhHHHHHHHHHhcC-CHHHHHHHHHHHHhCCCCCCHhhH--
Q 036198 273 KTYAIMIVALVQNDRMEECFSLLGHMINS-GCLP---DVSTYKEVLEGMCLAG-KVEEAYKFLEEMGNKGYPPDIVTY-- 345 (499)
Q Consensus 273 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~-~~~~---~~~~~~~ll~~~~~~g-~~~~a~~~~~~m~~~~~~p~~~~~-- 345 (499)
.+...+...|.+.|+.++..+++.....- +..+ .......+++.+.... ..+.-.++..+..+..- -+..+|
T Consensus 20 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~-~~~r~flr 98 (394)
T 3txn_A 20 QGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAK-QEKRTFLR 98 (394)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHH-HTTCHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 45566777788888888877777766432 1111 2334556666665532 33333333333322100 011222
Q ss_pred ----HHHHHHHHHcCCHHHHHHHHHHHHHCCCCcC-----hhhHHHHHHHHHhcCCchHHHHHHHHHhHC--CCCCCHHH
Q 036198 346 ----NCFLKVLCDNKNGDEALRLYGRMIEVGCWPS-----VQTYNMLISMYFELGEPDGAFETWHEMDKR--GCAQDVDT 414 (499)
Q Consensus 346 ----~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~-----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~--~~~p~~~~ 414 (499)
.-++..|...|++.+|.+++.++.+.=-..| ...|-.-++.|...+++.++...+...... .+.+++..
T Consensus 99 ~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i 178 (394)
T 3txn_A 99 QSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKV 178 (394)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHH
Confidence 1456677777777777777777665211111 234455556666777777777777665432 12233332
Q ss_pred HHHH--H--HHHH-hCCCHHHHHHHHHHH
Q 036198 415 YCVM--I--DGLF-DCSKVEEACFLLEEV 438 (499)
Q Consensus 415 ~~~l--i--~~~~-~~g~~~~a~~~~~~m 438 (499)
...+ . ..+. ..+++.+|...|-+.
T Consensus 179 ~a~i~~~~Gi~~l~~~rdyk~A~~~F~ea 207 (394)
T 3txn_A 179 QGALDLQSGILHAADERDFKTAFSYFYEA 207 (394)
T ss_dssp HHHHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHhccCHHHHHHHHHHH
Confidence 2211 1 1233 567777777666554
|
| >1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 | Back alignment and structure |
|---|
Probab=86.65 E-value=3.4 Score=36.16 Aligned_cols=22 Identities=23% Similarity=0.166 Sum_probs=14.4
Q ss_pred HHHHHHHHhCCChHHHHHHHHH
Q 036198 181 NLLLDALCKCGLVDYAETICKR 202 (499)
Q Consensus 181 ~~li~~~~~~g~~~~A~~~~~~ 202 (499)
++.+...++.|+.+....+++.
T Consensus 6 ~~~L~~A~~~g~~~~v~~Ll~~ 27 (285)
T 1wdy_A 6 NHLLIKAVQNEDVDLVQQLLEG 27 (285)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHT
T ss_pred chHHHHHHHcCCHHHHHHHHHc
Confidence 3456667778888776666543
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=86.51 E-value=7.2 Score=27.98 Aligned_cols=50 Identities=12% Similarity=0.071 Sum_probs=34.9
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 036198 427 KVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHMRKF 476 (499)
Q Consensus 427 ~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~ 476 (499)
+.-++.+-++.+....+.|++....+.++||.+.+++..|.++++.++..
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K 74 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK 74 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 44456666666666677777777777777777777777777777777654
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=85.81 E-value=25 Score=33.45 Aligned_cols=190 Identities=12% Similarity=0.086 Sum_probs=111.9
Q ss_pred cCCHhHHHHHHHHHHHcC---CCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCCcCHHhHHHHHHHH----H
Q 036198 247 ARMVTEAADLFEFMRTKG---STISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINS-GCLPDVSTYKEVLEGM----C 318 (499)
Q Consensus 247 ~g~~~~a~~~~~~m~~~~---~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~-~~~~~~~~~~~ll~~~----~ 318 (499)
.|+++.|++.+..+.+.. .+ ...+......++..|...++++...+.+.-+.+. |..+. ....+++.+ .
T Consensus 29 ~~~~~~a~e~ll~lEK~~r~~~d-~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~--ai~~~V~~~~~~l~ 105 (445)
T 4b4t_P 29 QNDCNSALDQLLVLEKKTRQASD-LASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKL--SIQYMIQKVMEYLK 105 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHSSSCS-TTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHH--HHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHhhhccc-hhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHH--HHHHHHHHHHHHHh
Confidence 377888888887777532 11 3445677788888999999998888877766643 33222 223333332 2
Q ss_pred hcCCHHHH--HHHHHHHHhC--C-CCC---CHhhHHHHHHHHHHcCCHHHHHHHHHHHHHC--CCCcC---hhhHHHHHH
Q 036198 319 LAGKVEEA--YKFLEEMGNK--G-YPP---DIVTYNCFLKVLCDNKNGDEALRLYGRMIEV--GCWPS---VQTYNMLIS 385 (499)
Q Consensus 319 ~~g~~~~a--~~~~~~m~~~--~-~~p---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--~~~~~---~~~~~~li~ 385 (499)
.....+.. ..+.+..... | +-. .......|...+...|++.+|..++.++... |.... ...+...++
T Consensus 106 ~~~~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~r 185 (445)
T 4b4t_P 106 SSKSLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQME 185 (445)
T ss_dssp HHCTTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHH
T ss_pred cCCchhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 33332221 1111111110 1 111 1122345677788888888888888887642 32111 345667777
Q ss_pred HHHhcCCchHHHHHHHHHhH----CCCCCC--HHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 036198 386 MYFELGEPDGAFETWHEMDK----RGCAQD--VDTYCVMIDGLFDCSKVEEACFLLEEVV 439 (499)
Q Consensus 386 ~~~~~~~~~~a~~~~~~m~~----~~~~p~--~~~~~~li~~~~~~g~~~~a~~~~~~m~ 439 (499)
.|...+++.+|..+++.+.. ....|+ ...|...+..+...+++.+|.+.|.+..
T Consensus 186 l~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~ 245 (445)
T 4b4t_P 186 LSILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIY 245 (445)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 88888888888888887642 222222 2345566667777788888877766654
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=84.46 E-value=0.00088 Score=63.02 Aligned_cols=247 Identities=14% Similarity=0.056 Sum_probs=166.5
Q ss_pred CHHHHHHHHHHHHhCCChHHHHHHHHHhhcCCCCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHH
Q 036198 176 EINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAAD 255 (499)
Q Consensus 176 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~~~~~la~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~ 255 (499)
...+|..|..+..+.|++.+|++-|-+. -|+..|..++.++.+.|.+++-.+
T Consensus 53 ~p~VWs~LgkAqL~~~~v~eAIdsyIkA----------------------------~Dps~y~eVi~~A~~~~~~edLv~ 104 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKGMVKEAIDSYIKA----------------------------DDPSSYMEVVQAANTSGNWEELVK 104 (624)
T ss_dssp CCCCSSSHHHHTTTSSSCTTTTTSSCCC----------------------------SCCCSSSHHHHHTTTSSCCTTHHH
T ss_pred CccHHHHHHHHHHccCchHHHHHHHHhC----------------------------CChHHHHHHHHHHHhCCCHHHHHH
Confidence 3447888888888888888887655222 156677888999999999999988
Q ss_pred HHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 036198 256 LFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGN 335 (499)
Q Consensus 256 ~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~ 335 (499)
.+...++.. -.| ..=+.|+-+|++.++..+..+.+ -.||..-...+.+-|...|.++.|.-+|..+..
T Consensus 105 yL~MaRk~~---ke~--~IDteLi~ayAk~~rL~elEefl-------~~~N~A~iq~VGDrcf~e~lYeAAKilys~isN 172 (624)
T 3lvg_A 105 YLQMARKKA---RES--YVETELIFALAKTNRLAELEEFI-------NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSN 172 (624)
T ss_dssp HHHTTSTTC---CST--TTTHHHHHHHHTSCSSSTTTSTT-------SCCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCC
T ss_pred HHHHHHHHh---ccc--ccHHHHHHHHHhhCcHHHHHHHH-------cCCCcccHHHHHHHHHHccCHHHHHHHHHhCcc
Confidence 887766654 223 34457888999988865543332 236666677778888888888888777765532
Q ss_pred C--------------------CCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcChhhHHHHHHHHHhcCCchH
Q 036198 336 K--------------------GYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDG 395 (499)
Q Consensus 336 ~--------------------~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~ 395 (499)
. .-.-++.||--+..+|...+++.-|.-.--.++-. ..-...++..|-..|.+++
T Consensus 173 ~akLAstLV~L~~yq~AVdaArKAns~ktWKeV~~ACvd~~EfrLAqicGLniIvh-----adeL~elv~~YE~~G~f~E 247 (624)
T 3lvg_A 173 FGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVH-----ADELEELINYYQDRGYFEE 247 (624)
T ss_dssp CTTTSSSSSSCSGGGSSTTTTTTCCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCC-----SSCCSGGGSSSSTTCCCTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHhCchHHHHHHHhcchhccc-----HHHHHHHHHHHHhCCCHHH
Confidence 1 11236789999999999999988776555554422 2223446677888999999
Q ss_pred HHHHHHHHhHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 036198 396 AFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHMRK 475 (499)
Q Consensus 396 a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~ 475 (499)
.+.+++.-... -+.....|+.|.-.|++- +.++.++.++..-.+ + ..-.++++|....-|.++.-++..-.+
T Consensus 248 LIsLlEaglgl-ErAHmGmFTELaILYsKY-~PeKlmEHlklf~sr-i-----NipKviracE~ahLW~ElvfLY~~ydE 319 (624)
T 3lvg_A 248 LITMLEAALGL-ERAHMGMFTELAILYSKF-KPQKMREHLELFWSR-V-----NIPKVLRAAEQAHLWAELVFLYDKYEE 319 (624)
T ss_dssp STTTHHHHTTS-TTCCHHHHHHHHHHHHSS-CTTHHHHHHTTSSSS-S-----CCTTTHHHHTTTTCHHHHHHHHHHHTC
T ss_pred HHHHHHHHhCC-CchhHHHHHHHHHHHHhc-CHHHHHHHHHHHHHh-c-----cHHHHHHHHHHHhhHHHHHHHHhcchh
Confidence 99999887643 245778899998888875 345444444332111 1 112466777777777777666655443
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=83.89 E-value=11 Score=28.73 Aligned_cols=69 Identities=7% Similarity=0.068 Sum_probs=33.7
Q ss_pred CCHHHHHHHHHHHHhCCC---HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcC
Q 036198 410 QDVDTYCVMIDGLFDCSK---VEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHMRKFYN 478 (499)
Q Consensus 410 p~~~~~~~li~~~~~~g~---~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~ 478 (499)
|+..+--.+..+++++.. ..++..++++..+.+..-....+-.+.-++.+.|++++|.++.+.+.+..|
T Consensus 38 vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP 109 (134)
T 3o48_A 38 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHER 109 (134)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCT
T ss_pred CChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCC
Confidence 444444444444444443 234555555555444111233344444556666666666666666555543
|
| >2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus} | Back alignment and structure |
|---|
Probab=81.51 E-value=16 Score=27.88 Aligned_cols=50 Identities=12% Similarity=0.071 Sum_probs=34.8
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 036198 427 KVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHMRKF 476 (499)
Q Consensus 427 ~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~ 476 (499)
+.-+..+-++.+...++-|++....+.+++|.+.+|+..|.++++-++..
T Consensus 68 D~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K 117 (152)
T 2y69_E 68 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK 117 (152)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 34455555666666677777777777777777777777777777777654
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=81.30 E-value=38 Score=32.16 Aligned_cols=190 Identities=13% Similarity=0.090 Sum_probs=112.8
Q ss_pred CCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHH----HHcCCHHH--HHHHHHHHHH--c
Q 036198 230 HAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVAL----VQNDRMEE--CFSLLGHMIN--S 301 (499)
Q Consensus 230 ~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~----~~~~~~~~--a~~~~~~m~~--~ 301 (499)
..........++..|.+.|+++...+.+..+..... . .-.....+++.+ ......+. -..+.+.+.. .
T Consensus 52 ~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~---q-lk~ai~~~V~~~~~~l~~~~~~d~~~~~~~i~~l~~vte 127 (445)
T 4b4t_P 52 LASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHG---Q-LKLSIQYMIQKVMEYLKSSKSLDLNTRISVIETIRVVTE 127 (445)
T ss_dssp TTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTT---T-SHHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHCCSSSSS
T ss_pred hhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhh---h-hHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhc
Confidence 344567788889999999999998888887766542 1 122233444333 22333222 1222221111 1
Q ss_pred C-CCcC---HHhHHHHHHHHHhcCCHHHHHHHHHHHHhC--CCCCC---HhhHHHHHHHHHHcCCHHHHHHHHHHHHH--
Q 036198 302 G-CLPD---VSTYKEVLEGMCLAGKVEEAYKFLEEMGNK--GYPPD---IVTYNCFLKVLCDNKNGDEALRLYGRMIE-- 370 (499)
Q Consensus 302 ~-~~~~---~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~--~~~p~---~~~~~~li~~~~~~g~~~~a~~~~~~m~~-- 370 (499)
| +-.. ......|...+...|++.+|.+++..+... |.... ...+...+..|...+++..|..++..+..
T Consensus 128 ~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~ 207 (445)
T 4b4t_P 128 NKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKT 207 (445)
T ss_dssp CCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhh
Confidence 1 1111 122345778888899999999999887643 22211 24566777888899999999998888642
Q ss_pred --CCCCcC--hhhHHHHHHHHHhcCCchHHHHHHHHHhHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 036198 371 --VGCWPS--VQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEV 438 (499)
Q Consensus 371 --~~~~~~--~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m 438 (499)
....|+ ...+...+..+...+++.+|.+ .|..+...+...++.......+..+
T Consensus 208 ~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~---------------~y~e~~~~~~~~~d~~~~~~~L~~~ 264 (445)
T 4b4t_P 208 FKNPKYESLKLEYYNLLVKISLHKREYLEVAQ---------------YLQEIYQTDAIKSDEAKWKPVLSHI 264 (445)
T ss_dssp HHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHH---------------HHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred cccCCcHHHHHHHHHHHHHHHHHhhhHHHHHH---------------HHHHHHhcccccCCHHHHHHHHHHH
Confidence 222222 2344556666666677766644 4777777777777776655555544
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 499 | ||||
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 5e-05 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 43.1 bits (100), Expect = 5e-05
Identities = 42/275 (15%), Positives = 83/275 (30%), Gaps = 8/275 (2%)
Query: 162 LKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNILG--- 218
+ + + + L LL +C +D + + A Y+ LG
Sbjct: 19 ERHCMQLWRQEPD-NTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVY 77
Query: 219 --MQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYA 276
L+E I+ + A + A D+ ++ S +
Sbjct: 78 KERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCV 137
Query: 277 IMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNK 336
+ + + ++ P+ + L + A E
Sbjct: 138 RSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVT 197
Query: 337 GYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGA 396
P + Y VL + + D A+ Y R + + + + L +Y+E G D A
Sbjct: 198 LDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHA-VVHGNLACVYYEQGLIDLA 256
Query: 397 FETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEA 431
+T+ + D YC + + L + V EA
Sbjct: 257 IDTYRRAIEL-QPHFPDAYCNLANALKEKGSVAEA 290
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 499 | |||
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.84 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.78 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.52 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.49 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.23 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.12 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.1 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.05 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.01 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 98.96 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 98.88 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 98.81 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 98.8 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 98.72 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.49 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.48 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.48 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.45 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.25 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.21 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.18 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.17 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.13 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 98.06 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.02 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 97.97 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 97.96 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 97.96 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 97.88 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 97.88 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 97.87 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 97.83 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 97.71 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 97.7 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.68 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 97.59 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.59 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 97.52 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 97.5 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 97.49 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 97.43 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 97.36 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 97.35 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 97.35 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 97.26 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 97.22 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 97.09 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 97.06 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 96.99 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 96.89 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 96.63 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 96.59 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 96.15 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 95.94 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 95.72 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 95.4 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 95.27 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 94.62 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 91.38 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 90.61 | |
| d1v54e_ | 105 | Cytochrome c oxidase subunit E {Cow (Bos taurus) [ | 90.15 | |
| d1v54e_ | 105 | Cytochrome c oxidase subunit E {Cow (Bos taurus) [ | 90.11 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.84 E-value=7.2e-17 Score=152.21 Aligned_cols=354 Identities=12% Similarity=0.009 Sum_probs=275.7
Q ss_pred ChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHHhhhcCC
Q 036198 94 EEKIAFRFFMWAGHQDNYAHEPLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLMILKQYTEKIKVKT 173 (499)
Q Consensus 94 ~~~~a~~~f~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 173 (499)
+.+.|.+.++.+.+.. +-++..+..+...+. +.|++++|...+++..+..
T Consensus 14 ~~~~A~~~~~~~l~~~--p~~~~~~~~la~~~~----~~~~~~~A~~~~~~al~~~------------------------ 63 (388)
T d1w3ba_ 14 DFEAAERHCMQLWRQE--PDNTGVLLLLSSIHF----QCRRLDRSAHFSTLAIKQN------------------------ 63 (388)
T ss_dssp CHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHH----HTTCHHHHHHHHHHHHHHC------------------------
T ss_pred CHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHH----HcCCHHHHHHHHHHHHHhC------------------------
Confidence 3456677776654432 126788888888888 9999999999999998776
Q ss_pred CCCHHHHHHHHHHHHhCCChHHHHHHHHHhhcCCCCChhhHHHH------------HHHHHHHHHHcCCCCCHHHHHHHH
Q 036198 174 QPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNIL------------GMQTLEEMIQMGHAPDNFTYNTAI 241 (499)
Q Consensus 174 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~~~~~l------------a~~~~~~m~~~g~~p~~~~~~~li 241 (499)
+-+..+|..+...|.+.|++++|.+.+.......+.+...+... ........... ............
T Consensus 64 p~~~~a~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 142 (388)
T d1w3ba_ 64 PLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQY-NPDLYCVRSDLG 142 (388)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHH-CTTCTHHHHHHH
T ss_pred CCCHHHHHHHHHHhhhhcccccccccccccccccccccccccccccccccccccccccccccccccc-cccccccccccc
Confidence 23567899999999999999999999999876544444433333 22222222222 233455556667
Q ss_pred HHHHhcCCHhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcC
Q 036198 242 DTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAG 321 (499)
Q Consensus 242 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g 321 (499)
......+....+...+....... +-+...+..+...+...|++++|...++...+.. +-+...+..+...+...|
T Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~ 217 (388)
T d1w3ba_ 143 NLLKALGRLEEAKACYLKAIETQ----PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEAR 217 (388)
T ss_dssp HHHHTTSCHHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTT
T ss_pred ccccccchhhhhHHHHHHhhccC----cchhHHHHhhcccccccCcHHHHHHHHHHHHHhC-cccHHHHHHHhhhhhccc
Confidence 77778888888888888887764 3467788888889999999999999999988764 345677888889999999
Q ss_pred CHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcChhhHHHHHHHHHhcCCchHHHHHHH
Q 036198 322 KVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWH 401 (499)
Q Consensus 322 ~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~ 401 (499)
++++|...++.....+.. +...+..+...+.+.|++++|...|++..+.. +-+..++..+...+...|++++|.+.++
T Consensus 218 ~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~ 295 (388)
T d1w3ba_ 218 IFDRAVAAYLRALSLSPN-HAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYN 295 (388)
T ss_dssp CTTHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred cHHHHHHHHHHhHHHhhh-HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 999999999988776433 66778888899999999999999999988754 2346788889999999999999999999
Q ss_pred HHhHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcChhH
Q 036198 402 EMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHMRKFYNPVI 481 (499)
Q Consensus 402 ~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~ 481 (499)
..... .+.+...+..+...+...|++++|...+++..+... -+..++..+..+|.+.|++++|.+.+++..+..|...
T Consensus 296 ~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~ 373 (388)
T d1w3ba_ 296 TALRL-CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFP-EFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFA 373 (388)
T ss_dssp HHHHH-CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCT-TCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCH
T ss_pred hhhcc-CCccchhhhHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Confidence 88765 345777888889999999999999999999887642 2577888899999999999999999999999877655
Q ss_pred HHHHHH
Q 036198 482 ARRLAL 487 (499)
Q Consensus 482 ~~~~~~ 487 (499)
.-...+
T Consensus 374 ~a~~~l 379 (388)
T d1w3ba_ 374 DAYSNM 379 (388)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444433
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.78 E-value=7.6e-15 Score=138.04 Aligned_cols=331 Identities=12% Similarity=-0.004 Sum_probs=245.8
Q ss_pred CCChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHHh---
Q 036198 92 QFEEKIAFRFFMWAGHQDNYAHEPLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLMILKQYTEK--- 168 (499)
Q Consensus 92 ~~~~~~a~~~f~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~l~~~~~~--- 168 (499)
....+.|..+|+.+.+.. +-+..+|..+...+. +.|++++|...+......... ...............
T Consensus 46 ~~~~~~A~~~~~~al~~~--p~~~~a~~~l~~~~~----~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 117 (388)
T d1w3ba_ 46 CRRLDRSAHFSTLAIKQN--PLLAEAYSNLGNVYK----ERGQLQEAIEHYRHALRLKPD--FIDGYINLAAALVAAGDM 117 (388)
T ss_dssp TTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHH----HHTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHHSCS
T ss_pred cCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHhh----hhccccccccccccccccccc--cccccccccccccccccc
Confidence 345667888887664432 126788999999999 999999999999999887632 111111111110000
Q ss_pred ---------hhcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHhhcCCCCChhhHHHHHHHHHHHHHHcCCCCCHHHHHH
Q 036198 169 ---------IKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQTLEEMIQMGHAPDNFTYNT 239 (499)
Q Consensus 169 ---------~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~~~~~la~~~~~~m~~~g~~p~~~~~~~ 239 (499)
......................+....+...+.. ..... +-+...+..
T Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------~~~~~-~~~~~~~~~ 174 (388)
T d1w3ba_ 118 EGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLK----------------------AIETQ-PNFAVAWSN 174 (388)
T ss_dssp SHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHH----------------------HHHHC-TTCHHHHHH
T ss_pred cccccccccccccccccccccccccccccccchhhhhHHHHHH----------------------hhccC-cchhHHHHh
Confidence 0011112222223333333333333333333333 22222 225678888
Q ss_pred HHHHHHhcCCHhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHh
Q 036198 240 AIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCL 319 (499)
Q Consensus 240 li~~~~~~g~~~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~ 319 (499)
+...+...|++++|...++...+.. +-+..+|..+...+...|++++|...+....+.+ +.+...+..+...+.+
T Consensus 175 l~~~~~~~~~~~~A~~~~~~al~~~----p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 249 (388)
T d1w3ba_ 175 LGCVFNAQGEIWLAIHHFEKAVTLD----PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVHGNLACVYYE 249 (388)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred hcccccccCcHHHHHHHHHHHHHhC----cccHHHHHHHhhhhhccccHHHHHHHHHHhHHHh-hhHHHHHHHHHHHHHH
Confidence 8999999999999999999998875 4467889999999999999999999999998865 4567778888999999
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcChhhHHHHHHHHHhcCCchHHHHH
Q 036198 320 AGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFET 399 (499)
Q Consensus 320 ~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~ 399 (499)
.|++++|.+.|++..+.... +..++..+...+...|++++|.+.++...... +.+...+..+...+...|++++|.+.
T Consensus 250 ~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~ 327 (388)
T d1w3ba_ 250 QGLIDLAIDTYRRAIELQPH-FPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIKREQGNIEEAVRL 327 (388)
T ss_dssp TTCHHHHHHHHHHHHHTCSS-CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHhhhccC-CccchhhhHHHHHHHHCCCHHHHHHH
Confidence 99999999999998886433 57789999999999999999999999988754 35677888999999999999999999
Q ss_pred HHHHhHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 036198 400 WHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGD 462 (499)
Q Consensus 400 ~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~ 462 (499)
+++..+.. +-+..++..+...|...|++++|...+++..+... -+...|..+..+|.+.||
T Consensus 328 ~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P-~~~~a~~~lg~~~~~~~D 388 (388)
T d1w3ba_ 328 YRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISP-TFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCT-TCHHHHHHHHHHHHHTCC
T ss_pred HHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCC
Confidence 99988752 22567888899999999999999999999987652 257789999999988876
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.52 E-value=3.4e-12 Score=116.92 Aligned_cols=236 Identities=11% Similarity=-0.033 Sum_probs=188.8
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHH
Q 036198 239 TAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMC 318 (499)
Q Consensus 239 ~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~ 318 (499)
.....+.+.|++++|+..|+++.+.. +-+..+|..+..++...|++++|...|.+..+.. +-+...+..+...|.
T Consensus 24 ~~g~~~~~~g~~~~A~~~~~~al~~~----P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~ 98 (323)
T d1fcha_ 24 EEGLRRLQEGDLPNAVLLFEAAVQQD----PKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFT 98 (323)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHSC----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC----CCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccc-ccccccccccccccc
Confidence 45677889999999999999999875 4468899999999999999999999999998764 346778888899999
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCC--------------HhhHHHHHHHHHHcCCHHHHHHHHHHHHHCC-CCcChhhHHHH
Q 036198 319 LAGKVEEAYKFLEEMGNKGYPPD--------------IVTYNCFLKVLCDNKNGDEALRLYGRMIEVG-CWPSVQTYNML 383 (499)
Q Consensus 319 ~~g~~~~a~~~~~~m~~~~~~p~--------------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~-~~~~~~~~~~l 383 (499)
..|++++|.+.++.......... .......+..+...+.+.+|...+.+..+.. -..+..++..+
T Consensus 99 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~~~~~~l 178 (323)
T d1fcha_ 99 NESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGL 178 (323)
T ss_dssp HTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHH
T ss_pred ccccccccccchhhHHHhccchHHHHHhhhhhhhhcccccchhhHHHHHHhhHHHHHHHHHHHHHHHhhcccccccchhh
Confidence 99999999999999876532100 0011112233445567788888888877643 23456778888
Q ss_pred HHHHHhcCCchHHHHHHHHHhHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 036198 384 ISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDL 463 (499)
Q Consensus 384 i~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~ 463 (499)
...+...|++++|...++...... +-+...|..+...|...|++++|.+.+++..+... -+...+..+..+|.+.|++
T Consensus 179 ~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~g~~ 256 (323)
T d1fcha_ 179 GVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQP-GYIRSRYNLGISCINLGAH 256 (323)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHhhhhcccccccccc-cccccchhhhhhcccccccchhHHHHHHHHHHHhh-ccHHHHHHHHHHHHHCCCH
Confidence 899999999999999999987753 23577888999999999999999999999987652 3577899999999999999
Q ss_pred HHHHHHHHHHHhhcChhH
Q 036198 464 GAIHKLSDHMRKFYNPVI 481 (499)
Q Consensus 464 ~~a~~~~~~m~~~~~~~~ 481 (499)
++|.+.|++..+..+...
T Consensus 257 ~~A~~~~~~al~l~p~~~ 274 (323)
T d1fcha_ 257 REAVEHFLEALNMQRKSR 274 (323)
T ss_dssp HHHHHHHHHHHHHHHTC-
T ss_pred HHHHHHHHHHHHhCCcCh
Confidence 999999999988655543
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.49 E-value=2.5e-11 Score=110.95 Aligned_cols=255 Identities=10% Similarity=-0.004 Sum_probs=195.6
Q ss_pred HHHHHHHhCCChHHHHHHHHHhhcCCCCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHH
Q 036198 182 LLLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMR 261 (499)
Q Consensus 182 ~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~~~~~la~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 261 (499)
.....+.+.|++++|...|++..+. .+-+..+|..+..++...|++++|...|++..
T Consensus 24 ~~g~~~~~~g~~~~A~~~~~~al~~-----------------------~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al 80 (323)
T d1fcha_ 24 EEGLRRLQEGDLPNAVLLFEAAVQQ-----------------------DPKHMEAWQYLGTTQAENEQELLAISALRRCL 80 (323)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHS-----------------------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHh-----------------------CCCCHHHHHHHHHHHHHcCChHHHHHHHHhhh
Confidence 4566788999999999999998652 12257789999999999999999999999999
Q ss_pred HcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHH----------------hHHHHHHHHHhcCCHHH
Q 036198 262 TKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVS----------------TYKEVLEGMCLAGKVEE 325 (499)
Q Consensus 262 ~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~----------------~~~~ll~~~~~~g~~~~ 325 (499)
+.. +-+...|..+...|...|++++|.+.++...... |+.. .....+..+...+...+
T Consensus 81 ~~~----p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (323)
T d1fcha_ 81 ELK----PDNQTALMALAVSFTNESLQRQACEILRDWLRYT--PAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLE 154 (323)
T ss_dssp HHC----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS--TTTGGGCC---------------CTTHHHHHHHHHHH
T ss_pred ccc----cccccccccccccccccccccccccchhhHHHhc--cchHHHHHhhhhhhhhcccccchhhHHHHHHhhHHHH
Confidence 875 3467889999999999999999999999988652 2211 11112334455667888
Q ss_pred HHHHHHHHHhCCC-CCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcChhhHHHHHHHHHhcCCchHHHHHHHHHh
Q 036198 326 AYKFLEEMGNKGY-PPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMD 404 (499)
Q Consensus 326 a~~~~~~m~~~~~-~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 404 (499)
|.+.+....+... .++...+..+...+...|++++|...|++...... -+...|..+..+|...|++++|.+.++...
T Consensus 155 a~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 233 (323)
T d1fcha_ 155 VKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRP-NDYLLWNKLGATLANGNQSEEAVAAYRRAL 233 (323)
T ss_dssp HHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcccccccchhhHHHHHHHHHHhhhhccccccccccc-ccccchhhhhhcccccccchhHHHHHHHHH
Confidence 8888888765432 34567788888999999999999999999887542 356788899999999999999999999988
Q ss_pred HCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC----------CCCCHHHHHHHHHHHHhcCCHHHHH
Q 036198 405 KRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKG----------LKLPYRKFDSYLMQLSVIGDLGAIH 467 (499)
Q Consensus 405 ~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~----------~~p~~~~~~~ll~~~~~~g~~~~a~ 467 (499)
+.. +-+..+|..+..+|.+.|++++|...|++.++.. .......|..+-.++...|+.+.+.
T Consensus 234 ~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~l~~al~~~~~~d~~~ 305 (323)
T d1fcha_ 234 ELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYG 305 (323)
T ss_dssp HHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHH
T ss_pred HHh-hccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcChhhhhhhHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 752 2256788899999999999999999999887631 1122335555666666666665443
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.23 E-value=4.3e-09 Score=95.03 Aligned_cols=224 Identities=15% Similarity=0.074 Sum_probs=170.8
Q ss_pred hHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHc--------------CCHHHHHHHHHHHHHcCCCcCHHhHHHHHHH
Q 036198 251 TEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQN--------------DRMEECFSLLGHMINSGCLPDVSTYKEVLEG 316 (499)
Q Consensus 251 ~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~--------------~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~ 316 (499)
+.+..+|+++.... +.+...|...+..+... +..++|..+|++..+...+.+...+...+..
T Consensus 33 ~Rv~~vyerAl~~~----~~~~~lW~~y~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~ral~~~~p~~~~l~~~ya~~ 108 (308)
T d2onda1 33 KRVMFAYEQCLLVL----GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADY 108 (308)
T ss_dssp HHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHcCchHHHHHHHhhcccchHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 44666777776653 34556665555544322 3357888999998876555566778888888
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcChhhHHHHHHH-HHhcCCchH
Q 036198 317 MCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISM-YFELGEPDG 395 (499)
Q Consensus 317 ~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~-~~~~~~~~~ 395 (499)
+.+.|+++.|..+|+.+.+.........|...+..+.+.|+.+.|.++|+.+.+.+. .+...|...... +...|+.+.
T Consensus 109 ~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~al~~~~-~~~~~~~~~a~~e~~~~~~~~~ 187 (308)
T d2onda1 109 EESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDAR-TRHHVYVTAALMEYYCSKDKSV 187 (308)
T ss_dssp HHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTT-CCTHHHHHHHHHHHHTSCCHHH
T ss_pred HHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHhccCHHH
Confidence 999999999999999998865443455789999999999999999999999987653 233344333332 344689999
Q ss_pred HHHHHHHHhHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC-CCCC--HHHHHHHHHHHHhcCCHHHHHHHHHH
Q 036198 396 AFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKG-LKLP--YRKFDSYLMQLSVIGDLGAIHKLSDH 472 (499)
Q Consensus 396 a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~-~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~ 472 (499)
|..+|+.+.+. .+.+...|...+..+.+.|+++.|..+|++..... ..|. ...|..++.--...|+.+.+.++.++
T Consensus 188 a~~i~e~~l~~-~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r 266 (308)
T d2onda1 188 AFKIFELGLKK-YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKR 266 (308)
T ss_dssp HHHHHHHHHHH-HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred HHHHHHHHHHh-hhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 99999999875 34467889999999999999999999999998765 3333 35788888877888999999999999
Q ss_pred HHhhcChh
Q 036198 473 MRKFYNPV 480 (499)
Q Consensus 473 m~~~~~~~ 480 (499)
+.+.++..
T Consensus 267 ~~~~~~~~ 274 (308)
T d2onda1 267 RFTAFREE 274 (308)
T ss_dssp HHHHTTTT
T ss_pred HHHHCccc
Confidence 99988755
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.12 E-value=3.8e-08 Score=90.07 Aligned_cols=279 Identities=10% Similarity=-0.029 Sum_probs=196.8
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHhhcCCCCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHH
Q 036198 180 LNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEF 259 (499)
Q Consensus 180 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~~~~~la~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 259 (499)
.......+...|++++|.+++++..+..+.+.... ....+..+..++...|++++|+..|++
T Consensus 15 ~~lrA~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~------------------~~~a~~~lg~~~~~~g~~~~A~~~~~~ 76 (366)
T d1hz4a_ 15 NALRAQVAINDGNPDEAERLAKLALEELPPGWFYS------------------RIVATSVLGEVLHCKGELTRSLALMQQ 76 (366)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHH------------------HHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCcCCCcHH------------------HHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 33445567889999999999998765322211100 134677788899999999999999998
Q ss_pred HHHcCCCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc----CCCc---CHHhHHHHHHHHHhcCCHHHHHHHH
Q 036198 260 MRTKGSTI--SSPTAKTYAIMIVALVQNDRMEECFSLLGHMINS----GCLP---DVSTYKEVLEGMCLAGKVEEAYKFL 330 (499)
Q Consensus 260 m~~~~~~~--~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~----~~~~---~~~~~~~ll~~~~~~g~~~~a~~~~ 330 (499)
..+..... .......+..+...+...|++..+...+...... +... ....+..+...+...|+++.+...+
T Consensus 77 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~ 156 (366)
T d1hz4a_ 77 TEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASA 156 (366)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHH
Confidence 87632100 1112345667777888999999999999876542 1111 1234556677889999999999999
Q ss_pred HHHHhC----CCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCc--ChhhHHHHHHHHHhcCCchHHHHHH
Q 036198 331 EEMGNK----GYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEV----GCWP--SVQTYNMLISMYFELGEPDGAFETW 400 (499)
Q Consensus 331 ~~m~~~----~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~~--~~~~~~~li~~~~~~~~~~~a~~~~ 400 (499)
...... +.......+......+...++...+...+.+.... +..+ ....+..+...+...|+.++|...+
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 236 (366)
T d1hz4a_ 157 RSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWL 236 (366)
T ss_dssp HHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHhhhhhhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHH
Confidence 887654 22223445666667788899999999888876542 1111 1234566777788999999999999
Q ss_pred HHHhHCCCC---CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH----CCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHH
Q 036198 401 HEMDKRGCA---QDVDTYCVMIDGLFDCSKVEEACFLLEEVVN----KGLKLP-YRKFDSYLMQLSVIGDLGAIHKLSDH 472 (499)
Q Consensus 401 ~~m~~~~~~---p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~----~~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~ 472 (499)
....+.... .....+..+...+...|++++|...+++... .+..|+ ...+..+..+|...|++++|.+.+++
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~ 316 (366)
T d1hz4a_ 237 RHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLD 316 (366)
T ss_dssp HHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHhccccchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 987654322 2244566678889999999999999998763 344343 44677788999999999999999998
Q ss_pred HHhh
Q 036198 473 MRKF 476 (499)
Q Consensus 473 m~~~ 476 (499)
..+.
T Consensus 317 Al~l 320 (366)
T d1hz4a_ 317 ALKL 320 (366)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7664
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.10 E-value=2.5e-08 Score=90.07 Aligned_cols=238 Identities=10% Similarity=0.030 Sum_probs=182.3
Q ss_pred HHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHcCCCcCHHhHHH
Q 036198 234 NFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQND-RMEECFSLLGHMINSGCLPDVSTYKE 312 (499)
Q Consensus 234 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~-~~~~a~~~~~~m~~~~~~~~~~~~~~ 312 (499)
...++.+...+.+.+..++|+++++.+.+.. +-+..+|+....++...| ++++|+..++...+.. +-+..+|..
T Consensus 43 ~~a~~~~~~~~~~~e~~~~Al~~~~~ai~ln----P~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~-p~~~~a~~~ 117 (315)
T d2h6fa1 43 RDVYDYFRAVLQRDERSERAFKLTRDAIELN----AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHH 117 (315)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHHC----CCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHH-HhhhhHHHH
Confidence 4567777788889999999999999999986 456788999988888876 5999999999998874 456888999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcChhhHHHHHHHHHhcCC
Q 036198 313 VLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGE 392 (499)
Q Consensus 313 ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~ 392 (499)
+...+.+.|++++|++.++.+.+.... +...|..+...+.+.|++++|.+.++.+.+.+. -+...|+.+...+.+.+.
T Consensus 118 ~~~~~~~l~~~~eAl~~~~kal~~dp~-n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p-~n~~a~~~r~~~l~~~~~ 195 (315)
T d2h6fa1 118 RRVLVEWLRDPSQELEFIADILNQDAK-NYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDV-RNNSVWNQRYFVISNTTG 195 (315)
T ss_dssp HHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTC
T ss_pred HhHHHHhhccHHHHHHHHhhhhhhhhc-chHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCC-ccHHHHHHHHHHHHHccc
Confidence 999999999999999999999987544 788999999999999999999999999998653 356678877777766665
Q ss_pred ------chHHHHHHHHHhHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhc--C--
Q 036198 393 ------PDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLK-LPYRKFDSYLMQLSVI--G-- 461 (499)
Q Consensus 393 ------~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~-p~~~~~~~ll~~~~~~--g-- 461 (499)
+++|.+.+....+.. +-+...|.-+...+.. ...+++.+.++...+.... .+...+..+...|... +
T Consensus 196 ~~~~~~~~~ai~~~~~al~~~-P~~~~~~~~l~~ll~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~y~~~~~~~~ 273 (315)
T d2h6fa1 196 YNDRAVLEREVQYTLEMIKLV-PHNESAWNYLKGILQD-RGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQC 273 (315)
T ss_dssp SCSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTT-TCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHTTC
T ss_pred cchhhhhHHhHHHHHHHHHhC-CCchHHHHHHHHHHHh-cChHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHHHHhcCH
Confidence 467888888877653 2366777766555544 4467788888877665433 2455666677776543 2
Q ss_pred -----CHHHHHHHHHHHHhhcChh
Q 036198 462 -----DLGAIHKLSDHMRKFYNPV 480 (499)
Q Consensus 462 -----~~~~a~~~~~~m~~~~~~~ 480 (499)
.+++|.++++.+.+...+.
T Consensus 274 ~~~~~~~~ka~~l~~~l~~~~Dpi 297 (315)
T d2h6fa1 274 DNKEDILNKALELCEILAKEKDTI 297 (315)
T ss_dssp SSHHHHHHHHHHHHHHHHHTTCGG
T ss_pred HHHHHHHHHHHHHHHHHHHhcCHH
Confidence 2456666666665555543
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.05 E-value=1.2e-07 Score=86.53 Aligned_cols=300 Identities=11% Similarity=-0.000 Sum_probs=205.8
Q ss_pred hhhhHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHhhcCCCCC
Q 036198 131 KAKQFRLVCSMLDYMKRNNKVFVPVDVLLMILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPN 210 (499)
Q Consensus 131 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~ 210 (499)
..|++++|.+++++.........+. ....++..+...+...|++++|.+.|++..+.
T Consensus 24 ~~g~~~~A~~~~~~aL~~~~~~~~~-------------------~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~---- 80 (366)
T d1hz4a_ 24 NDGNPDEAERLAKLALEELPPGWFY-------------------SRIVATSVLGEVLHCKGELTRSLALMQQTEQM---- 80 (366)
T ss_dssp HTTCHHHHHHHHHHHHHTCCTTCHH-------------------HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH----
T ss_pred HCCCHHHHHHHHHHHHhhCcCCCcH-------------------HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH----
Confidence 8899999999999988765210000 01346778888999999999999999987541
Q ss_pred hhhHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHc----CCCCCCC-CHHHHHHHHHHHHH
Q 036198 211 ANTYNILGMQTLEEMIQMGHAP-DNFTYNTAIDTFCKARMVTEAADLFEFMRTK----GSTISSP-TAKTYAIMIVALVQ 284 (499)
Q Consensus 211 ~~~~~~la~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~~~~p-~~~~~~~ll~~~~~ 284 (499)
....+..+ ....+..+...+...|++..+...+...... +.. ..+ ....+..+...+..
T Consensus 81 --------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~-~~~~~~~~~~~la~~~~~ 145 (366)
T d1hz4a_ 81 --------------ARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLE-QLPMHEFLVRIRAQLLWA 145 (366)
T ss_dssp --------------HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCT-TSTHHHHHHHHHHHHHHH
T ss_pred --------------HHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccc-hhhHHHHHHHHHHHHHHH
Confidence 01111111 2345667778889999999999998876542 211 111 23455667778889
Q ss_pred cCCHHHHHHHHHHHHHcC----CCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCC--CHhhHHHHHHHHHH
Q 036198 285 NDRMEECFSLLGHMINSG----CLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNK----GYPP--DIVTYNCFLKVLCD 354 (499)
Q Consensus 285 ~~~~~~a~~~~~~m~~~~----~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~----~~~p--~~~~~~~li~~~~~ 354 (499)
.|+++.+...+....... .......+......+...++...+...+...... +..+ ....+..+...+..
T Consensus 146 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (366)
T d1hz4a_ 146 WARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQM 225 (366)
T ss_dssp TTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHH
T ss_pred hcchhhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHh
Confidence 999999999998887642 2233455666677788899999998888765432 1111 12345666677889
Q ss_pred cCCHHHHHHHHHHHHHCCCC---cChhhHHHHHHHHHhcCCchHHHHHHHHHhH----CCCCCC-HHHHHHHHHHHHhCC
Q 036198 355 NKNGDEALRLYGRMIEVGCW---PSVQTYNMLISMYFELGEPDGAFETWHEMDK----RGCAQD-VDTYCVMIDGLFDCS 426 (499)
Q Consensus 355 ~g~~~~a~~~~~~m~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~----~~~~p~-~~~~~~li~~~~~~g 426 (499)
.|+++.|...++........ .....+..+..++...|++++|...++.... .+..|+ ..++..+...|...|
T Consensus 226 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g 305 (366)
T d1hz4a_ 226 TGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAG 305 (366)
T ss_dssp TTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT
T ss_pred cccHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCC
Confidence 99999999999887654322 2234566788899999999999999998753 344443 346777888999999
Q ss_pred CHHHHHHHHHHHHHC----CCC----CCHHHHHHHHHHHHhcCCHHHHHH
Q 036198 427 KVEEACFLLEEVVNK----GLK----LPYRKFDSYLMQLSVIGDLGAIHK 468 (499)
Q Consensus 427 ~~~~a~~~~~~m~~~----~~~----p~~~~~~~ll~~~~~~g~~~~a~~ 468 (499)
++++|.+.+++..+. |.. -....+..++..+...+..+++.+
T Consensus 306 ~~~~A~~~l~~Al~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~e~e~ 355 (366)
T d1hz4a_ 306 RKSDAQRVLLDALKLANRTGFISHFVIEGEAMAQQLRQLIQLNTLPELEQ 355 (366)
T ss_dssp CHHHHHHHHHHHHHHHHHHCCCHHHHTTHHHHHHHHHHHHHTTCSCHHHH
T ss_pred CHHHHHHHHHHHHHHhhhcCcHHHHHHHHHHHHHHHHHHHhcCCChHHHH
Confidence 999999999987643 321 122345556666777777666543
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.01 E-value=1.1e-07 Score=85.56 Aligned_cols=189 Identities=8% Similarity=0.019 Sum_probs=147.9
Q ss_pred CCHhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHHH
Q 036198 248 RMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAY 327 (499)
Q Consensus 248 g~~~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~ 327 (499)
+..++|..+|++..+.. .+.+...|...+....+.|+++.|..+|+.+.+.........|...+..+.+.|+.+.|.
T Consensus 78 ~~~~~a~~i~~ral~~~---~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar 154 (308)
T d2onda1 78 LFSDEAANIYERAISTL---LKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGR 154 (308)
T ss_dssp HHHHHHHHHHHHHHTTT---TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHH
T ss_pred cchHHHHHHHHHHHHHc---CCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHH
Confidence 34578889999988764 345677888888999999999999999999987643333557888999999999999999
Q ss_pred HHHHHHHhCCCCCCHhhHHHHHH-HHHHcCCHHHHHHHHHHHHHCCCCcChhhHHHHHHHHHhcCCchHHHHHHHHHhHC
Q 036198 328 KFLEEMGNKGYPPDIVTYNCFLK-VLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKR 406 (499)
Q Consensus 328 ~~~~~m~~~~~~p~~~~~~~li~-~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 406 (499)
++|+...+.+.. +...|..... -+...|+.+.|..+|+.+.+.. +.+...|...+..+.+.|+.+.|..+|++..+.
T Consensus 155 ~i~~~al~~~~~-~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~-p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~ 232 (308)
T d2onda1 155 MIFKKAREDART-RHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTS 232 (308)
T ss_dssp HHHHHHHTSTTC-CTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHS
T ss_pred HHHHHHHHhCCC-cHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhh-hhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHh
Confidence 999998877543 3344433333 2345689999999999998752 345678899999999999999999999998775
Q ss_pred C-CCCC--HHHHHHHHHHHHhCCCHHHHHHHHHHHHHC
Q 036198 407 G-CAQD--VDTYCVMIDGLFDCSKVEEACFLLEEVVNK 441 (499)
Q Consensus 407 ~-~~p~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 441 (499)
. ..|. ...|...+.--...|+.+.+.++.+++.+.
T Consensus 233 ~~~~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~ 270 (308)
T d2onda1 233 GSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 270 (308)
T ss_dssp SSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred CCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3 3433 457888888777889999999999988654
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.96 E-value=1.3e-07 Score=85.29 Aligned_cols=216 Identities=7% Similarity=0.041 Sum_probs=153.3
Q ss_pred HHHHHHHHHHHhcchhhhhhHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhCC-Ch
Q 036198 115 PLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLMILKQYTEKIKVKTQPEINALNLLLDALCKCG-LV 193 (499)
Q Consensus 115 ~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~ 193 (499)
...|+.+-..+. +.+.+++|+.++++..+.+ |-+..+|+....++...| ++
T Consensus 43 ~~a~~~~~~~~~----~~e~~~~Al~~~~~ai~ln------------------------P~~~~a~~~r~~~l~~l~~~~ 94 (315)
T d2h6fa1 43 RDVYDYFRAVLQ----RDERSERAFKLTRDAIELN------------------------AANYTVWHFRRVLLKSLQKDL 94 (315)
T ss_dssp HHHHHHHHHHHH----HTCCCHHHHHHHHHHHHHC------------------------TTCHHHHHHHHHHHHHTTCCH
T ss_pred HHHHHHHHHHHH----hCCchHHHHHHHHHHHHHC------------------------CCChHHHHHHHHHHHHhCcCH
Confidence 345666666676 7888999999999998876 246678888888888876 48
Q ss_pred HHHHHHHHHhhcCCCCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCCCCHH
Q 036198 194 DYAETICKRVKNKVKPNANTYNILGMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAK 273 (499)
Q Consensus 194 ~~A~~~~~~m~~~~~p~~~~~~~la~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~p~~~ 273 (499)
++|+..++...+. .+-+..+|+.+...+.+.|++++|++.++.+.+.. +-+..
T Consensus 95 ~eal~~~~~al~~-----------------------~p~~~~a~~~~~~~~~~l~~~~eAl~~~~kal~~d----p~n~~ 147 (315)
T d2h6fa1 95 HEEMNYITAIIEE-----------------------QPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQD----AKNYH 147 (315)
T ss_dssp HHHHHHHHHHHHH-----------------------CTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC----TTCHH
T ss_pred HHHHHHHHHHHHH-----------------------HHhhhhHHHHHhHHHHhhccHHHHHHHHhhhhhhh----hcchH
Confidence 9999988887541 12267788888888999999999999999998875 45788
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCC------HHHHHHHHHHHHhCCCCCCHhhHHH
Q 036198 274 TYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGK------VEEAYKFLEEMGNKGYPPDIVTYNC 347 (499)
Q Consensus 274 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~------~~~a~~~~~~m~~~~~~p~~~~~~~ 347 (499)
+|..+...+...|++++|++.++.+.+.+ +-+...|+.+...+.+.+. +++|.+.+....+.... +...|+.
T Consensus 148 a~~~~~~~~~~~~~~~~Al~~~~~al~~~-p~n~~a~~~r~~~l~~~~~~~~~~~~~~ai~~~~~al~~~P~-~~~~~~~ 225 (315)
T d2h6fa1 148 AWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPH-NESAWNY 225 (315)
T ss_dssp HHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTT-CHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHC-CccHHHHHHHHHHHHHccccchhhhhHHhHHHHHHHHHhCCC-chHHHHH
Confidence 99999999999999999999999998874 3456677766666655554 56777777776665422 5566665
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCc-ChhhHHHHHHHHH
Q 036198 348 FLKVLCDNKNGDEALRLYGRMIEVGCWP-SVQTYNMLISMYF 388 (499)
Q Consensus 348 li~~~~~~g~~~~a~~~~~~m~~~~~~~-~~~~~~~li~~~~ 388 (499)
+...+. ....+++.+.++...+....+ +...+..+...|.
T Consensus 226 l~~ll~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~y~ 266 (315)
T d2h6fa1 226 LKGILQ-DRGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYE 266 (315)
T ss_dssp HHHHHT-TTCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHH
T ss_pred HHHHHH-hcChHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHH
Confidence 555443 344566667776665533222 2334444554443
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=98.88 E-value=2.2e-08 Score=87.64 Aligned_cols=96 Identities=7% Similarity=-0.018 Sum_probs=51.8
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHH
Q 036198 236 TYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLE 315 (499)
Q Consensus 236 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~ 315 (499)
+|..+..+|.+.|++++|++.|++..+.. +-+..+|+.+..++.+.|++++|...|++..+.. +-+..++..+..
T Consensus 39 ~~~~~G~~y~~~g~~~~A~~~~~~al~l~----p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~ 113 (259)
T d1xnfa_ 39 LLYERGVLYDSLGLRALARNDFSQALAIR----PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELD-PTYNYAHLNRGI 113 (259)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHhhccC----CCCHHHHhhhchHHHHHHHHHHhhhhhhHHHHHH-hhhhhhHHHHHH
Confidence 44445555555566666666665555543 2345555555555555555555555555555542 223344555555
Q ss_pred HHHhcCCHHHHHHHHHHHHhC
Q 036198 316 GMCLAGKVEEAYKFLEEMGNK 336 (499)
Q Consensus 316 ~~~~~g~~~~a~~~~~~m~~~ 336 (499)
++...|++++|.+.|+...+.
T Consensus 114 ~~~~~g~~~~A~~~~~~al~~ 134 (259)
T d1xnfa_ 114 ALYYGGRDKLAQDDLLAFYQD 134 (259)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHhh
Confidence 555555555555555555443
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.81 E-value=4.5e-08 Score=89.26 Aligned_cols=273 Identities=10% Similarity=-0.005 Sum_probs=185.0
Q ss_pred HHHHHHHHhCCChHHHHHHHHHhhcCCCCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHH
Q 036198 181 NLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFM 260 (499)
Q Consensus 181 ~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~~~~~la~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m 260 (499)
..++....+.+..++|++++++.....|-+...|+... .++..+ ......+...|++++|+.+++..
T Consensus 33 ~~~~~~~~~~~~~~~al~~~~~~l~~~P~~~~a~~~r~-~~l~~l------------~~~~~~~~~~~~~~~al~~~~~~ 99 (334)
T d1dcea1 33 QAVFQKRQAGELDESVLELTSQILGANPDFATLWNCRR-EVLQHL------------ETEKSPEESAALVKAELGFLESC 99 (334)
T ss_dssp HHHHHHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHH-HHHHHH------------HTTSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcccccHHHHHHHHHHHHHCCCcHHHHHHHH-HHHHHH------------hhhcchHHHHHHHHHHHHHHHHH
Confidence 33433344444558999999988653222222222110 000000 01111234456688999999999
Q ss_pred HHcCCCCCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHcCCCcCHHhHH-HHHHHHHhcCCHHHHHHHHHHHHhCC
Q 036198 261 RTKGSTISSPTAKTYAIMIVALVQND--RMEECFSLLGHMINSGCLPDVSTYK-EVLEGMCLAGKVEEAYKFLEEMGNKG 337 (499)
Q Consensus 261 ~~~~~~~~~p~~~~~~~ll~~~~~~~--~~~~a~~~~~~m~~~~~~~~~~~~~-~ll~~~~~~g~~~~a~~~~~~m~~~~ 337 (499)
.+.. +-+...|..+..++...+ ++++|...+....+.. +.+...+. .....+...+.+++|...++...+.+
T Consensus 100 l~~~----pk~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~ 174 (334)
T d1dcea1 100 LRVN----PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN 174 (334)
T ss_dssp HHHC----TTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT
T ss_pred HHhC----CCcHHHHHHhhHHHHHhccccHHHHHHHHHHHHhhC-chhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcC
Confidence 8875 446777887777777765 4899999999998874 33455544 44467778899999999999988876
Q ss_pred CCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcChhhHHHHHHHHHhcCCchHHHHHHHHHhHCCCCCCHHHHHH
Q 036198 338 YPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCV 417 (499)
Q Consensus 338 ~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ 417 (499)
.. +...|+.+...+.+.|++++|...+....+. .|+. ..+...+...+..+++...+....... +++...+..
T Consensus 175 p~-~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~---~~~~~~~~~l~~~~~a~~~~~~~l~~~-~~~~~~~~~ 247 (334)
T d1dcea1 175 FS-NYSSWHYRSCLLPQLHPQPDSGPQGRLPENV--LLKE---LELVQNAFFTDPNDQSAWFYHRWLLGR-AEPLFRCEL 247 (334)
T ss_dssp CC-CHHHHHHHHHHHHHHSCCCCSSSCCSSCHHH--HHHH---HHHHHHHHHHCSSCSHHHHHHHHHHSC-CCCSSSCCC
T ss_pred CC-CHHHHHHHHHHHHHhcCHHHHHHHHHHhHHh--HHHH---HHHHHHHHHhcchhHHHHHHHHHHHhC-cchhhHHHH
Confidence 54 7888999999999999998876665544432 1211 223344556677788888888776653 234445666
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCh
Q 036198 418 MIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHMRKFYNP 479 (499)
Q Consensus 418 li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~ 479 (499)
+...+...|+.++|...+.+...... -+...+..+..++...|+.++|.+.+++..+..|.
T Consensus 248 l~~~~~~~~~~~~a~~~~~~~~~~~p-~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ldP~ 308 (334)
T d1dcea1 248 SVEKSTVLQSELESCKELQELEPENK-WCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPM 308 (334)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHCTTCH-HHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGG
T ss_pred HHHHHHHHhhHHHHHHHHHHHHhhCc-hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcc
Confidence 67777778899999999988776542 25667788889999999999999999999998764
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=98.80 E-value=1e-07 Score=83.13 Aligned_cols=225 Identities=8% Similarity=-0.138 Sum_probs=154.7
Q ss_pred CHhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHHHH
Q 036198 249 MVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYK 328 (499)
Q Consensus 249 ~~~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~ 328 (499)
+.+.++.-+++.........+-...+|..+...|.+.|++++|...|++..+.. +-+..+|..+..+|.+.|++++|.+
T Consensus 14 ~~e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~-p~~~~a~~~lg~~~~~~g~~~~A~~ 92 (259)
T d1xnfa_ 14 QQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYE 92 (259)
T ss_dssp HHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccC-CCCHHHHhhhchHHHHHHHHHHhhh
Confidence 456677777777765421001124577788889999999999999999999874 4567889999999999999999999
Q ss_pred HHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcChhhHHHHHHHHHhcCCchHHHHHHHHHhHCCC
Q 036198 329 FLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGC 408 (499)
Q Consensus 329 ~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~ 408 (499)
.|++..+.... +..++..+..++...|++++|...|+...+... .+......+..++.+.+..+.+..+.........
T Consensus 93 ~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (259)
T d1xnfa_ 93 AFDSVLELDPT-YNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDP-NDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDK 170 (259)
T ss_dssp HHHHHHHHCTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSCC
T ss_pred hhhHHHHHHhh-hhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhcc-ccHHHHHHHHHHHHHhhhHHHHHHHHHHhhccch
Confidence 99999886533 566888899999999999999999999987642 2344444444555666666666666666555422
Q ss_pred CCCHHHHHHHHHHHHhCCC----HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcChh
Q 036198 409 AQDVDTYCVMIDGLFDCSK----VEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHMRKFYNPV 480 (499)
Q Consensus 409 ~p~~~~~~~li~~~~~~g~----~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~ 480 (499)
.+ ..++ ++..+..... .+.+...+....... +-...+|..+...|...|++++|.+.+++..+..|..
T Consensus 171 ~~--~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 242 (259)
T d1xnfa_ 171 EQ--WGWN-IVEFYLGNISEQTLMERLKADATDNTSLA-EHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHN 242 (259)
T ss_dssp CS--THHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHH-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTT
T ss_pred hh--hhhh-HHHHHHHHHHHHHHHHHHHHHHHHhhhcC-cccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCC
Confidence 22 1222 2333322222 333333333222221 1123467778899999999999999999999876653
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.72 E-value=8e-08 Score=87.54 Aligned_cols=267 Identities=9% Similarity=-0.039 Sum_probs=183.5
Q ss_pred hhhhHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHH---Hh-------CCChHHHHHHH
Q 036198 131 KAKQFRLVCSMLDYMKRNNKVFVPVDVLLMILKQYTEKIKVKTQPEINALNLLLDAL---CK-------CGLVDYAETIC 200 (499)
Q Consensus 131 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~li~~~---~~-------~g~~~~A~~~~ 200 (499)
+.+..++|.++++.....++ -+...|+..-..+ .. .|++++|+..+
T Consensus 41 ~~~~~~~al~~~~~~l~~~P------------------------~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~ 96 (334)
T d1dcea1 41 AGELDESVLELTSQILGANP------------------------DFATLWNCRREVLQHLETEKSPEESAALVKAELGFL 96 (334)
T ss_dssp TTCCSHHHHHHHHHHHHHCT------------------------TCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHH
T ss_pred cccccHHHHHHHHHHHHHCC------------------------CcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHH
Confidence 44445899999999887761 2333454333332 22 33456666666
Q ss_pred HHhhcCCCCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC--HhHHHHHHHHHHHcCCCCCCCCHHHHHHH
Q 036198 201 KRVKNKVKPNANTYNILGMQTLEEMIQMGHAPDNFTYNTAIDTFCKARM--VTEAADLFEFMRTKGSTISSPTAKTYAIM 278 (499)
Q Consensus 201 ~~m~~~~~p~~~~~~~la~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~--~~~a~~~~~~m~~~~~~~~~p~~~~~~~l 278 (499)
+...+ .. +-+...|..+..++...++ +++|...+..+.+.. +++...+...
T Consensus 97 ~~~l~----------------------~~-pk~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~----~~~~~~~~~~ 149 (334)
T d1dcea1 97 ESCLR----------------------VN-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEAD----ERNFHCWDYR 149 (334)
T ss_dssp HHHHH----------------------HC-TTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHC----TTCHHHHHHH
T ss_pred HHHHH----------------------hC-CCcHHHHHHhhHHHHHhccccHHHHHHHHHHHHhhC----chhhhhhhhH
Confidence 66543 22 2266777777777777664 889999999998875 4566666544
Q ss_pred -HHHHHHcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCC
Q 036198 279 -IVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKN 357 (499)
Q Consensus 279 -l~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 357 (499)
...+...+.+++|+..++.+.+.. +-+...|+.+...+.+.|++++|...+....+. .|+ .......+...+.
T Consensus 150 ~~~~~~~~~~~~~Al~~~~~~i~~~-p~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~---~~~~~~~~~~l~~ 223 (334)
T d1dcea1 150 RFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENV--LLK---ELELVQNAFFTDP 223 (334)
T ss_dssp HHHHHHTCCCHHHHHHHHHTTTTTT-CCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHH--HHH---HHHHHHHHHHHCS
T ss_pred HHHHHHhccccHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHhHHh--HHH---HHHHHHHHHHhcc
Confidence 466777899999999999998875 456788888999999999988776555433322 111 1223344556677
Q ss_pred HHHHHHHHHHHHHCCCCcChhhHHHHHHHHHhcCCchHHHHHHHHHhHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHH
Q 036198 358 GDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEE 437 (499)
Q Consensus 358 ~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 437 (499)
.+++...+........ ++...+..+...+...++.++|...+.+..+.. +-+..++..+...+...|+.++|.+.+++
T Consensus 224 ~~~a~~~~~~~l~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ 301 (334)
T d1dcea1 224 NDQSAWFYHRWLLGRA-EPLFRCELSVEKSTVLQSELESCKELQELEPEN-KWCLLTIILLMRALDPLLYEKETLQYFST 301 (334)
T ss_dssp SCSHHHHHHHHHHSCC-CCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHCTGGGHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhCc-chhhHHHHHHHHHHHHhhHHHHHHHHHHHHhhC-chHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 7888888888777542 445566677778888899999999999887652 12456777788889999999999999999
Q ss_pred HHHCCCCCC-HHHHHHHHHHHH
Q 036198 438 VVNKGLKLP-YRKFDSYLMQLS 458 (499)
Q Consensus 438 m~~~~~~p~-~~~~~~ll~~~~ 458 (499)
..+.. |+ ..-|..+...+.
T Consensus 302 ai~ld--P~~~~y~~~L~~~~~ 321 (334)
T d1dcea1 302 LKAVD--PMRAAYLDDLRSKFL 321 (334)
T ss_dssp HHHHC--GGGHHHHHHHHHHHH
T ss_pred HHHHC--cccHHHHHHHHHHHh
Confidence 98864 54 344455544443
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.49 E-value=9.3e-06 Score=66.72 Aligned_cols=124 Identities=10% Similarity=-0.102 Sum_probs=83.4
Q ss_pred HHHHHhCCChHHHHHHHHHhhcCCCCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHc
Q 036198 184 LDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFEFMRTK 263 (499)
Q Consensus 184 i~~~~~~g~~~~A~~~~~~m~~~~~p~~~~~~~la~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 263 (499)
...+...|++++|++.|+++. +|+..+|..+..+|.+.|++++|++.|++..+.
T Consensus 12 g~~~~~~~d~~~Al~~~~~i~--------------------------~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~l 65 (192)
T d1hh8a_ 12 GVLAADKKDWKGALDAFSAVQ--------------------------DPHSRICFNIGCMYTILKNMTEAEKAFTRSINR 65 (192)
T ss_dssp HHHHHHTTCHHHHHHHHHTSS--------------------------SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHhcC--------------------------CCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHH
Confidence 445667788888888876543 246667777888888888888888888888877
Q ss_pred CCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC--------------cC-HHhHHHHHHHHHhcCCHHHHHH
Q 036198 264 GSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCL--------------PD-VSTYKEVLEGMCLAGKVEEAYK 328 (499)
Q Consensus 264 ~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~--------------~~-~~~~~~ll~~~~~~g~~~~a~~ 328 (499)
+ +-+...|..+..++.+.|++++|...|++....... ++ ..++..+..++.+.|++++|.+
T Consensus 66 d----p~~~~a~~~~g~~~~~~g~~~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~ 141 (192)
T d1hh8a_ 66 D----KHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEE 141 (192)
T ss_dssp C----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred h----hhhhhhHHHHHHHHHhhccHHHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHH
Confidence 5 446777888888888888888888888776643100 00 1333445555666666666666
Q ss_pred HHHHHHhCC
Q 036198 329 FLEEMGNKG 337 (499)
Q Consensus 329 ~~~~m~~~~ 337 (499)
.+....+..
T Consensus 142 ~l~~A~~~~ 150 (192)
T d1hh8a_ 142 QLALATSMK 150 (192)
T ss_dssp HHHHHHTTC
T ss_pred HHHHHHhcC
Confidence 666655543
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.48 E-value=4.8e-06 Score=73.66 Aligned_cols=202 Identities=12% Similarity=-0.014 Sum_probs=119.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHc----CCCc-CHHhHHHHHHHHHhcCCHHHHHHHHHHHHhC----CC-CCCHhh
Q 036198 275 YAIMIVALVQNDRMEECFSLLGHMINS----GCLP-DVSTYKEVLEGMCLAGKVEEAYKFLEEMGNK----GY-PPDIVT 344 (499)
Q Consensus 275 ~~~ll~~~~~~~~~~~a~~~~~~m~~~----~~~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~----~~-~p~~~~ 344 (499)
|.-....|...+++++|...|.+..+. +-.+ -..+|..+..+|.+.|++++|.+.++...+. |. .....+
T Consensus 40 y~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 119 (290)
T d1qqea_ 40 CVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANF 119 (290)
T ss_dssp HHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHH
Confidence 444455677777778877777776542 1111 2346777777788888888888877765432 11 111334
Q ss_pred HHHHHHHHHH-cCCHHHHHHHHHHHHHC----CCCcC-hhhHHHHHHHHHhcCCchHHHHHHHHHhHCCCC-----CCH-
Q 036198 345 YNCFLKVLCD-NKNGDEALRLYGRMIEV----GCWPS-VQTYNMLISMYFELGEPDGAFETWHEMDKRGCA-----QDV- 412 (499)
Q Consensus 345 ~~~li~~~~~-~g~~~~a~~~~~~m~~~----~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~-----p~~- 412 (499)
+..+...|.. .|++++|...+++..+. +..+. ..++..+...|...|++++|.+.|++....... ...
T Consensus 120 ~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~ 199 (290)
T d1qqea_ 120 KFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLK 199 (290)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHH
T ss_pred HHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHH
Confidence 5555555544 58888888888776532 21111 345677788888888888888888887654211 111
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCC-CC---HHHHHHHHHHHHh--cCCHHHHHHHHHHHHhh
Q 036198 413 DTYCVMIDGLFDCSKVEEACFLLEEVVNKGLK-LP---YRKFDSYLMQLSV--IGDLGAIHKLSDHMRKF 476 (499)
Q Consensus 413 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~-p~---~~~~~~ll~~~~~--~g~~~~a~~~~~~m~~~ 476 (499)
..+...+..+...|+++.|...+++..+.... ++ ......++.++.. .+.+++|...|+.+.+.
T Consensus 200 ~~~~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~sre~~~l~~l~~a~~~~d~e~~~eai~~y~~~~~l 269 (290)
T d1qqea_ 200 DYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRL 269 (290)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCC
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhc
Confidence 12334444556778888888888877655321 11 2345566666554 23466777766665554
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.48 E-value=1.1e-05 Score=71.36 Aligned_cols=174 Identities=10% Similarity=-0.072 Sum_probs=100.0
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHhhcCCCCChhhHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHhHHHHHHH
Q 036198 180 LNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQTLEEMIQMGHAP-DNFTYNTAIDTFCKARMVTEAADLFE 258 (499)
Q Consensus 180 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~~~~~la~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~a~~~~~ 258 (499)
|.-..+.|...|++++|.+.|.+..+ + ....+-++ -..+|..+..+|.+.|++++|.+.++
T Consensus 40 y~~aa~~y~~~~~~~~A~~~y~kA~~---------------~---~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~ 101 (290)
T d1qqea_ 40 CVQAATIYRLRKELNLAGDSFLKAAD---------------Y---QKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLE 101 (290)
T ss_dssp HHHHHHHHHHTTCTHHHHHHHHHHHH---------------H---HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHCcCHHHHHHHHHHHHH---------------H---HHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHH
Confidence 34445678888999999999888643 1 11222222 24578888888889999999988888
Q ss_pred HHHHcCCCC--CCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHc----CCCc-CHHhHHHHHHHHHhcCCHHHHHHHH
Q 036198 259 FMRTKGSTI--SSPTAKTYAIMIVALVQ-NDRMEECFSLLGHMINS----GCLP-DVSTYKEVLEGMCLAGKVEEAYKFL 330 (499)
Q Consensus 259 ~m~~~~~~~--~~p~~~~~~~ll~~~~~-~~~~~~a~~~~~~m~~~----~~~~-~~~~~~~ll~~~~~~g~~~~a~~~~ 330 (499)
+..+..... ......++..+...|.. .|++++|...|.+..+. +..+ ...++..+...+...|++++|.+.|
T Consensus 102 ~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~ 181 (290)
T d1qqea_ 102 NAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIY 181 (290)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HhhHHhhhcccchhHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHH
Confidence 765432100 11113445555555544 57788887777766432 1111 1234555666677777777777777
Q ss_pred HHHHhCCCCCCH------hhHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 036198 331 EEMGNKGYPPDI------VTYNCFLKVLCDNKNGDEALRLYGRMIEV 371 (499)
Q Consensus 331 ~~m~~~~~~p~~------~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 371 (499)
++.......... ..+...+..+...|+++.|...+++..+.
T Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~A~~~~~~~~~~ 228 (290)
T d1qqea_ 182 SKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSE 228 (290)
T ss_dssp HHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC
T ss_pred HHHHHhCccchhhhhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 666554221111 11223333445566666666666665543
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.45 E-value=1.6e-05 Score=65.34 Aligned_cols=127 Identities=13% Similarity=-0.070 Sum_probs=93.9
Q ss_pred HHHHHhcCCHhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhc
Q 036198 241 IDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLA 320 (499)
Q Consensus 241 i~~~~~~g~~~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~ 320 (499)
...+...|+++.|++.|+++ .+|+..+|..+..+|...|++++|.+.|++..+.. +-+...|..+..+|.+.
T Consensus 12 g~~~~~~~d~~~Al~~~~~i-------~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ld-p~~~~a~~~~g~~~~~~ 83 (192)
T d1hh8a_ 12 GVLAADKKDWKGALDAFSAV-------QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQT 83 (192)
T ss_dssp HHHHHHTTCHHHHHHHHHTS-------SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHCCCHHHHHHHHHhc-------CCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHh-hhhhhhHHHHHHHHHhh
Confidence 55667788999998888753 35677888888889999999999999999988775 45677888888888899
Q ss_pred CCHHHHHHHHHHHHhCCCC------------C--C-HhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCc
Q 036198 321 GKVEEAYKFLEEMGNKGYP------------P--D-IVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWP 375 (499)
Q Consensus 321 g~~~~a~~~~~~m~~~~~~------------p--~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~ 375 (499)
|++++|.+.|++....... . + ..++..+..++.+.|++++|.+.+....+....+
T Consensus 84 g~~~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~~~ 153 (192)
T d1hh8a_ 84 EKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP 153 (192)
T ss_dssp TCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG
T ss_pred ccHHHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence 9999999888887543110 0 0 2344556667778888888888887777654333
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.25 E-value=3.9e-05 Score=57.09 Aligned_cols=92 Identities=10% Similarity=0.013 Sum_probs=61.9
Q ss_pred HHHHHHhcCCHhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHh
Q 036198 240 AIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCL 319 (499)
Q Consensus 240 li~~~~~~g~~~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~ 319 (499)
-...+.+.|++++|+..|++..+.. +-+...|..+..++...|++++|...+....+.+ +.+...|..+..++..
T Consensus 9 ~g~~~~~~g~~~eAi~~~~~al~~~----p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~g~~~~~ 83 (117)
T d1elwa_ 9 KGNKALSVGNIDDALQCYSEAIKLD----PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAALEF 83 (117)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcC----CcchhhhhcccccccccccccccchhhhhHHHhc-cchhhHHHHHHHHHHH
Confidence 3455666777777777777776664 4456667777777777777777777777776654 4456666666677777
Q ss_pred cCCHHHHHHHHHHHHhC
Q 036198 320 AGKVEEAYKFLEEMGNK 336 (499)
Q Consensus 320 ~g~~~~a~~~~~~m~~~ 336 (499)
.|++++|...|+...+.
T Consensus 84 ~~~~~~A~~~~~~a~~~ 100 (117)
T d1elwa_ 84 LNRFEEAKRTYEEGLKH 100 (117)
T ss_dssp TTCHHHHHHHHHHHHTT
T ss_pred ccCHHHHHHHHHHHHHh
Confidence 77777777777776654
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.21 E-value=3.8e-05 Score=60.79 Aligned_cols=95 Identities=14% Similarity=0.096 Sum_probs=72.2
Q ss_pred HHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHH
Q 036198 238 NTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGM 317 (499)
Q Consensus 238 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~ 317 (499)
......|.+.|++++|+..|++..+.. +-+...|..+..+|...|++++|...|+...+.. +-+...|..+..++
T Consensus 14 ~~~gn~~~~~~~y~~A~~~~~~al~~~----p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~-p~~~~a~~~~g~~~ 88 (159)
T d1a17a_ 14 KTQANDYFKAKDYENAIKFYSQAIELN----PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASN 88 (159)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHS----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHhhhccccc----hhhhhhhhhhHHHHHhccccchHHHHHHHHHHHc-ccchHHHHHHHHHH
Confidence 344566778888888888888888775 4467778888888888888888888888887764 44556777788888
Q ss_pred HhcCCHHHHHHHHHHHHhCC
Q 036198 318 CLAGKVEEAYKFLEEMGNKG 337 (499)
Q Consensus 318 ~~~g~~~~a~~~~~~m~~~~ 337 (499)
...|++++|...+++.....
T Consensus 89 ~~~g~~~eA~~~~~~a~~~~ 108 (159)
T d1a17a_ 89 MALGKFRAALRDYETVVKVK 108 (159)
T ss_dssp HHTTCHHHHHHHHHHHHHHS
T ss_pred HHcCCHHHHHHHHHHHHHcC
Confidence 88888888888888877653
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.18 E-value=1.7e-05 Score=65.58 Aligned_cols=99 Identities=13% Similarity=0.035 Sum_probs=61.1
Q ss_pred CCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHhHH
Q 036198 232 PDNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYK 311 (499)
Q Consensus 232 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~ 311 (499)
|++..+......|.+.|++++|+..|++..+.. +.+...|..+..+|.+.|++++|...|+...+.. +-+..+|.
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~----p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~-p~~~~a~~ 76 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN----PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHF 76 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----CCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhC-CCcHHHHH
Confidence 455555566666666677777777776666654 3456666666666666666666666666666542 22345566
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHh
Q 036198 312 EVLEGMCLAGKVEEAYKFLEEMGN 335 (499)
Q Consensus 312 ~ll~~~~~~g~~~~a~~~~~~m~~ 335 (499)
.+..+|...|++++|...|+...+
T Consensus 77 ~lg~~~~~l~~~~~A~~~~~~al~ 100 (201)
T d2c2la1 77 FLGQCQLEMESYDEAIANLQRAYS 100 (201)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHH
Confidence 666666666666666666665543
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.17 E-value=2e-05 Score=58.78 Aligned_cols=90 Identities=20% Similarity=0.110 Sum_probs=43.1
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCcChhhHHHHHHHHHhcCCchHHHHHHHHHhHCCCCCCHHHHHHHHHHHHhCCCHH
Q 036198 350 KVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVE 429 (499)
Q Consensus 350 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~ 429 (499)
..+.+.|++++|...|++.++.. +.+...|..+..+|...|++++|...+....+.+ +.+...|..+..++...|+++
T Consensus 11 ~~~~~~g~~~eAi~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~g~~~~~~~~~~ 88 (117)
T d1elwa_ 11 NKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAALEFLNRFE 88 (117)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHcCCHHHHHHHHHHHHhcC-CcchhhhhcccccccccccccccchhhhhHHHhc-cchhhHHHHHHHHHHHccCHH
Confidence 34445555555555555554432 1233444555555555555555555555544432 224444445555555555555
Q ss_pred HHHHHHHHHHHC
Q 036198 430 EACFLLEEVVNK 441 (499)
Q Consensus 430 ~a~~~~~~m~~~ 441 (499)
+|...+++..+.
T Consensus 89 ~A~~~~~~a~~~ 100 (117)
T d1elwa_ 89 EAKRTYEEGLKH 100 (117)
T ss_dssp HHHHHHHHHHTT
T ss_pred HHHHHHHHHHHh
Confidence 555555555443
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.13 E-value=2.9e-05 Score=64.06 Aligned_cols=99 Identities=13% Similarity=-0.002 Sum_probs=83.8
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHH
Q 036198 270 PTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFL 349 (499)
Q Consensus 270 p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li 349 (499)
|+...+......+.+.|++++|+..|.+..+.. +.+...|..+..+|.+.|++++|...|+...+.... +..+|..+.
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~-p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~-~~~a~~~lg 79 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ-SVKAHFFLG 79 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTT-CHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCC-cHHHHHHHH
Confidence 677777788889999999999999999888774 557788888899999999999999999998876432 567888899
Q ss_pred HHHHHcCCHHHHHHHHHHHHH
Q 036198 350 KVLCDNKNGDEALRLYGRMIE 370 (499)
Q Consensus 350 ~~~~~~g~~~~a~~~~~~m~~ 370 (499)
.+|.+.|++++|...|++..+
T Consensus 80 ~~~~~l~~~~~A~~~~~~al~ 100 (201)
T d2c2la1 80 QCQLEMESYDEAIANLQRAYS 100 (201)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHH
Confidence 999999999999999998775
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=98.06 E-value=0.0026 Score=54.40 Aligned_cols=228 Identities=9% Similarity=-0.028 Sum_probs=162.9
Q ss_pred CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCcCHH
Q 036198 233 DNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQ----NDRMEECFSLLGHMINSGCLPDVS 308 (499)
Q Consensus 233 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~m~~~~~~~~~~ 308 (499)
|+..+..|...+.+.|++++|+++|++..+.| +..++..|...|.. ..+...|...+....+.+ +..
T Consensus 1 ~p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g------~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~---~~~ 71 (265)
T d1ouva_ 1 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK------ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSN 71 (265)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccc---ccc
Confidence 45567777788889999999999999999887 56677677777776 668999999999988776 333
Q ss_pred hHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCCcChhhH
Q 036198 309 TYKEVLEGMCL----AGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCD----NKNGDEALRLYGRMIEVGCWPSVQTY 380 (499)
Q Consensus 309 ~~~~ll~~~~~----~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~~~~~~~~~ 380 (499)
....+...+.. ..+.+.|...++.....|.. .....+...+.. ......+...+...... .+...+
T Consensus 72 a~~~l~~~~~~~~~~~~~~~~a~~~~~~a~~~g~~---~a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~ 145 (265)
T d1ouva_ 72 GCHLLGNLYYSGQGVSQNTNKALQYYSKACDLKYA---EGCASLGGIYHDGKVVTRDFKKAVEYFTKACDL---NDGDGC 145 (265)
T ss_dssp HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCH---HHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT---TCHHHH
T ss_pred hhhccccccccccccchhhHHHHHHHhhhhhhhhh---hHHHhhcccccCCCcccchhHHHHHHhhhhhcc---cccchh
Confidence 33344444332 56789999999988877643 233333333332 34566777777776664 356677
Q ss_pred HHHHHHHHh----cCCchHHHHHHHHHhHCCCCCCHHHHHHHHHHHHh----CCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 036198 381 NMLISMYFE----LGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFD----CSKVEEACFLLEEVVNKGLKLPYRKFDS 452 (499)
Q Consensus 381 ~~li~~~~~----~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~~~p~~~~~~~ 452 (499)
..|...|.. ..+...+...++...+.| +..+...+-..|.. ..+.++|..+|....+.| ++..+..
T Consensus 146 ~~L~~~~~~~~~~~~~~~~~~~~~~~a~~~g---~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~g---~~~a~~~ 219 (265)
T d1ouva_ 146 TILGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFN 219 (265)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred hhhhhhhccCCCcccccccchhhhhcccccc---ccccccchhhhcccCcccccchhhhhhhHhhhhccc---CHHHHHH
Confidence 777777775 345667788888877764 55555556555554 578999999999999987 4566667
Q ss_pred HHHHHHh----cCCHHHHHHHHHHHHhhcChhH
Q 036198 453 YLMQLSV----IGDLGAIHKLSDHMRKFYNPVI 481 (499)
Q Consensus 453 ll~~~~~----~g~~~~a~~~~~~m~~~~~~~~ 481 (499)
|...|.+ ..+.++|.++|++..+.+...-
T Consensus 220 LG~~y~~G~g~~~n~~~A~~~~~kAa~~g~~~A 252 (265)
T d1ouva_ 220 LGAMQYNGEGVTRNEKQAIENFKKGCKLGAKGA 252 (265)
T ss_dssp HHHHHHTTSSSSCCSTTHHHHHHHHHHHTCHHH
T ss_pred HHHHHHcCCCCccCHHHHHHHHHHHHHCcCHHH
Confidence 7777765 3488999999999988876653
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.02 E-value=0.00011 Score=58.05 Aligned_cols=108 Identities=14% Similarity=0.044 Sum_probs=87.4
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcChhhHHHHHHHHHhcCCchHHHHHHHHHhHCCCCCCHHHHHHHHHHHH
Q 036198 344 TYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLF 423 (499)
Q Consensus 344 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~ 423 (499)
.+......|.+.|++++|...|++..+.. +-+...|..+..+|...|++++|.+.|+...+.. +-+..+|..+..+|.
T Consensus 12 ~l~~~gn~~~~~~~y~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~-p~~~~a~~~~g~~~~ 89 (159)
T d1a17a_ 12 ELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNM 89 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHhhhccccc-hhhhhhhhhhHHHHHhccccchHHHHHHHHHHHc-ccchHHHHHHHHHHH
Confidence 34556677889999999999999999865 2467788999999999999999999999998763 336678999999999
Q ss_pred hCCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 036198 424 DCSKVEEACFLLEEVVNKGLKLPYRKFDSYL 454 (499)
Q Consensus 424 ~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll 454 (499)
..|++++|...+++....... +...+..+.
T Consensus 90 ~~g~~~eA~~~~~~a~~~~p~-~~~~~~~l~ 119 (159)
T d1a17a_ 90 ALGKFRAALRDYETVVKVKPH-DKDAKMKYQ 119 (159)
T ss_dssp HTTCHHHHHHHHHHHHHHSTT-CHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHcCCC-CHHHHHHHH
Confidence 999999999999999887522 344444443
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=97.97 E-value=5.8e-05 Score=55.55 Aligned_cols=90 Identities=14% Similarity=0.065 Sum_probs=64.0
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHH
Q 036198 239 TAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMC 318 (499)
Q Consensus 239 ~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~ 318 (499)
.+...+.+.|++++|+..|++..+.. +-+..+|..+..++.+.|++++|...|++..+.. +.+...+..+...|.
T Consensus 21 ~~g~~~~~~g~~~~A~~~~~~al~~~----p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~la~~y~ 95 (112)
T d1hxia_ 21 EEGLSMLKLANLAEAALAFEAVCQKE----PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHT 95 (112)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHS----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHhhhcccc----cccchhhhhhhhhhhhhhhHHHhhcccccccccc-cccccchHHHHHHHH
Confidence 34556677777777877777777764 3357777777777777777777777777777653 345666777777777
Q ss_pred hcCCHHHHHHHHHHH
Q 036198 319 LAGKVEEAYKFLEEM 333 (499)
Q Consensus 319 ~~g~~~~a~~~~~~m 333 (499)
..|++++|.+.+++.
T Consensus 96 ~~g~~~~A~~~l~~~ 110 (112)
T d1hxia_ 96 NEHNANAALASLRAW 110 (112)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHH
Confidence 777777777777664
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=97.96 E-value=0.004 Score=53.15 Aligned_cols=226 Identities=8% Similarity=-0.001 Sum_probs=157.5
Q ss_pred CHHHHHHHHHHHHhCCChHHHHHHHHHhhcCCCCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCCHh
Q 036198 176 EINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQTLEEMIQMGHAPDNFTYNTAIDTFCK----ARMVT 251 (499)
Q Consensus 176 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~~~~~la~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~ 251 (499)
|+..+..|...+-+.|++++|++.|++..+. | +...+..|...|.. ..+..
T Consensus 1 ~p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~----------------------g---~~~A~~~Lg~~y~~G~~~~~d~~ 55 (265)
T d1ouva_ 1 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL----------------------K---ENSGCFNLGVLYYQGQGVEKNLK 55 (265)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT----------------------T---CHHHHHHHHHHHHHTSSSCCCHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHC----------------------C---CHHHHHHHHHHHHcCCCcchhHH
Confidence 3456777778888899999999999987541 2 55566666666665 56788
Q ss_pred HHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHH----hcCCH
Q 036198 252 EAADLFEFMRTKGSTISSPTAKTYAIMIVALVQ----NDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMC----LAGKV 323 (499)
Q Consensus 252 ~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~----~~g~~ 323 (499)
.|...+......+ +......+...+.. ..+.+.|...++...+.|.. .....+...+. .....
T Consensus 56 ~a~~~~~~a~~~~------~~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~a~~~g~~---~a~~~l~~~~~~~~~~~~~~ 126 (265)
T d1ouva_ 56 KAASFYAKACDLN------YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLKYA---EGCASLGGIYHDGKVVTRDF 126 (265)
T ss_dssp HHHHHHHHHHHTT------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCH---HHHHHHHHHHHHCSSSCCCH
T ss_pred HHHHhhccccccc------ccchhhccccccccccccchhhHHHHHHHhhhhhhhhh---hHHHhhcccccCCCcccchh
Confidence 8999999888776 34444445444443 56788999999998887632 22222333333 24567
Q ss_pred HHHHHHHHHHHhCCCCCCHhhHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCCcChhhHHHHHHHHHh----cCCchH
Q 036198 324 EEAYKFLEEMGNKGYPPDIVTYNCFLKVLCD----NKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFE----LGEPDG 395 (499)
Q Consensus 324 ~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~----~~~~~~ 395 (499)
..+...+...... .+...+..+...+.. ..+...+...++...+.| +......+-..|.. ..+.++
T Consensus 127 ~~a~~~~~~~~~~---~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~a~~~g---~~~A~~~lg~~y~~g~~~~~d~~~ 200 (265)
T d1ouva_ 127 KKAVEYFTKACDL---NDGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKE 200 (265)
T ss_dssp HHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHH
T ss_pred HHHHHHhhhhhcc---cccchhhhhhhhhccCCCcccccccchhhhhcccccc---ccccccchhhhcccCcccccchhh
Confidence 7788888877665 366777778777775 456677888888887765 45555556555554 568999
Q ss_pred HHHHHHHHhHCCCCCCHHHHHHHHHHHHh----CCCHHHHHHHHHHHHHCCCC
Q 036198 396 AFETWHEMDKRGCAQDVDTYCVMIDGLFD----CSKVEEACFLLEEVVNKGLK 444 (499)
Q Consensus 396 a~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~~~ 444 (499)
|...|+...+.| ++..+..|...|.. ..+.++|.++|++..+.|..
T Consensus 201 A~~~~~~aa~~g---~~~a~~~LG~~y~~G~g~~~n~~~A~~~~~kAa~~g~~ 250 (265)
T d1ouva_ 201 ALARYSKACELE---NGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAK 250 (265)
T ss_dssp HHHHHHHHHHTT---CHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCH
T ss_pred hhhhHhhhhccc---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHCcCH
Confidence 999999998876 45566666666654 34788999999999888744
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.96 E-value=0.0043 Score=54.68 Aligned_cols=51 Identities=12% Similarity=-0.025 Sum_probs=31.2
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 036198 417 VMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLS 470 (499)
Q Consensus 417 ~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~ 470 (499)
.++..+-+.+++.....+++...+.| +....+++...|...+|++.-.+..
T Consensus 253 r~V~~~~k~~~l~li~p~Le~v~~~n---~~~vn~al~~lyie~~d~~~l~~~i 303 (336)
T d1b89a_ 253 RAVNYFSKVKQLPLVKPYLRSVQNHN---NKSVNESLNNLFITEEDYQALRTSI 303 (336)
T ss_dssp HHHHHHHHTTCTTTTHHHHHHHHTTC---CHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHhcCCcHHHHHHHHHHHHcC---hHHHHHHHHHHHhCcchhHHHHHHH
Confidence 34444445555555566665555544 3467778888888888876554444
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.88 E-value=0.0035 Score=55.27 Aligned_cols=137 Identities=15% Similarity=0.116 Sum_probs=75.5
Q ss_pred CCCHHHHHHHHHHHHhCCChHHHHHHHHHhhcCCCCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHH
Q 036198 174 QPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEA 253 (499)
Q Consensus 174 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~~~~~la~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a 253 (499)
.||..--..+...|-+.|.++.|..+|..+.. |..++..+.+.++++.|
T Consensus 11 ~~n~~d~~~i~~~c~~~~lye~A~~lY~~~~d-------------------------------~~rl~~~~v~l~~~~~a 59 (336)
T d1b89a_ 11 GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSN-------------------------------FGRLASTLVHLGEYQAA 59 (336)
T ss_dssp CC----------------CTTTHHHHHHHTTC-------------------------------HHHHHHHHHTTTCHHHH
T ss_pred CCCcCCHHHHHHHHHHCCCHHHHHHHHHhCCC-------------------------------HHHHHHHHHhhccHHHH
Confidence 35656666777888889999999999987765 45566777777777777
Q ss_pred HHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHH
Q 036198 254 ADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEM 333 (499)
Q Consensus 254 ~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m 333 (499)
.+++... + +..+|..+...+.+......+ .+...+...+......++..|-..|.+++...+++..
T Consensus 60 vd~~~k~---~------~~~~~k~~~~~l~~~~e~~la-----~i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~ 125 (336)
T d1b89a_ 60 VDGARKA---N------STRTWKEVCFACVDGKEFRLA-----QMCGLHIVVHADELEELINYYQDRGYFEELITMLEAA 125 (336)
T ss_dssp HHHHHHH---T------CHHHHHHHHHHHHHTTCHHHH-----HHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHc---C------CHHHHHHHHHHHHhCcHHHHH-----HHHHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 6666533 2 455777777777766555432 2222233345555566777777777777777777765
Q ss_pred HhCCCCCCHhhHHHHHHHHHHcC
Q 036198 334 GNKGYPPDIVTYNCFLKVLCDNK 356 (499)
Q Consensus 334 ~~~~~~p~~~~~~~li~~~~~~g 356 (499)
... -..+...++-++..|++.+
T Consensus 126 ~~~-~~~~~~~~~~L~~lyak~~ 147 (336)
T d1b89a_ 126 LGL-ERAHMGMFTELAILYSKFK 147 (336)
T ss_dssp TTS-TTCCHHHHHHHHHHHHTTC
T ss_pred HcC-CccchHHHHHHHHHHHHhC
Confidence 433 2335556666777666643
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.88 E-value=2.8e-05 Score=58.18 Aligned_cols=94 Identities=12% Similarity=0.040 Sum_probs=44.5
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCCcChhhHHHHHHHHHhcCC---chHHHHHHHHHhHCCCCCC-HHHHHHHHHHH
Q 036198 347 CFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGE---PDGAFETWHEMDKRGCAQD-VDTYCVMIDGL 422 (499)
Q Consensus 347 ~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~---~~~a~~~~~~m~~~~~~p~-~~~~~~li~~~ 422 (499)
.+++.+...+++++|++.|+.....+. .+..++..+..++.+.++ .++|..+++++...+..|+ ..++..+..+|
T Consensus 4 ~l~n~~~~~~~l~~Ae~~Y~~aL~~~p-~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y 82 (122)
T d1nzna_ 4 AVLNELVSVEDLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGN 82 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHH
Confidence 344555555555555555555555331 234444445555544332 2335555555544322222 12344445555
Q ss_pred HhCCCHHHHHHHHHHHHHC
Q 036198 423 FDCSKVEEACFLLEEVVNK 441 (499)
Q Consensus 423 ~~~g~~~~a~~~~~~m~~~ 441 (499)
.+.|++++|.+.|+++++.
T Consensus 83 ~~~g~~~~A~~~~~~aL~~ 101 (122)
T d1nzna_ 83 YRLKEYEKALKYVRGLLQT 101 (122)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHHhhhHHHHHHHHHHHHh
Confidence 5555555555555555543
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.87 E-value=7.5e-05 Score=55.78 Aligned_cols=91 Identities=15% Similarity=0.027 Sum_probs=37.1
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCH---HHHHHHHHHHHhCCCCCC-HhhHHHHHHHHHH
Q 036198 279 IVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKV---EEAYKFLEEMGNKGYPPD-IVTYNCFLKVLCD 354 (499)
Q Consensus 279 l~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~---~~a~~~~~~m~~~~~~p~-~~~~~~li~~~~~ 354 (499)
+..+...+++++|.+.|+...+.+ +.+..++..+..++.+.++. ++|.++++++...+..|+ ..+|..+..+|.+
T Consensus 6 ~n~~~~~~~l~~Ae~~Y~~aL~~~-p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y~~ 84 (122)
T d1nzna_ 6 LNELVSVEDLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYR 84 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHH
Confidence 334444444444444444444432 22334444444444432222 234444444443322222 1233344444444
Q ss_pred cCCHHHHHHHHHHHHH
Q 036198 355 NKNGDEALRLYGRMIE 370 (499)
Q Consensus 355 ~g~~~~a~~~~~~m~~ 370 (499)
.|++++|.+.|+++.+
T Consensus 85 ~g~~~~A~~~~~~aL~ 100 (122)
T d1nzna_ 85 LKEYEKALKYVRGLLQ 100 (122)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred HhhhHHHHHHHHHHHH
Confidence 4444444444444444
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=97.83 E-value=0.00012 Score=53.81 Aligned_cols=87 Identities=10% Similarity=0.003 Sum_probs=42.0
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCH
Q 036198 279 IVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNG 358 (499)
Q Consensus 279 l~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~ 358 (499)
...+.+.|++++|...|++..+.. +-+...|..+..++.+.|++++|...|+...+.... +..+|..+...|...|++
T Consensus 23 g~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~a~~~la~~y~~~g~~ 100 (112)
T d1hxia_ 23 GLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK-DIAVHAALAVSHTNEHNA 100 (112)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHhhhcccc-cccchhhhhhhhhhhhhhhHHHhhcccccccccccc-cccchHHHHHHHHHCCCH
Confidence 334444555555555555555442 223444555555555555555555555554443221 344444455555555555
Q ss_pred HHHHHHHHH
Q 036198 359 DEALRLYGR 367 (499)
Q Consensus 359 ~~a~~~~~~ 367 (499)
++|.+.+++
T Consensus 101 ~~A~~~l~~ 109 (112)
T d1hxia_ 101 NAALASLRA 109 (112)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 555555444
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.71 E-value=0.00074 Score=53.63 Aligned_cols=81 Identities=10% Similarity=-0.048 Sum_probs=59.2
Q ss_pred hhHHHHHHHHHhcCCchHHHHHHHHHhHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 036198 378 QTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQL 457 (499)
Q Consensus 378 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~ 457 (499)
.+|+.+..+|.+.|++++|+..++...+.. +-+..+|..+..+|...|++++|...|++..+.... +......+-.+.
T Consensus 63 ~~~~nla~~y~k~~~~~~A~~~~~~al~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~-n~~~~~~l~~~~ 140 (170)
T d1p5qa1 63 ASHLNLAMCHLKLQAFSAAIESCNKALELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPN-NKAAKTQLAVCQ 140 (170)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcccccchhhhhhhcc-ccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHH
Confidence 356677888888999999999998887753 237778888888889999999999999988876532 454544444443
Q ss_pred Hhc
Q 036198 458 SVI 460 (499)
Q Consensus 458 ~~~ 460 (499)
.+.
T Consensus 141 ~~~ 143 (170)
T d1p5qa1 141 QRI 143 (170)
T ss_dssp HHH
T ss_pred HHH
Confidence 333
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.70 E-value=0.0013 Score=52.14 Aligned_cols=125 Identities=10% Similarity=-0.081 Sum_probs=80.5
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHhhcCCCCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHH
Q 036198 179 ALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADLFE 258 (499)
Q Consensus 179 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~~~~~la~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~ 258 (499)
.+......+.+.|++++|...|++...-.+.+....... ......+ -..+|+.+..+|.+.|++++|+..++
T Consensus 15 ~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~-~~~~~~~-------~~~~~~nla~~y~k~~~~~~A~~~~~ 86 (170)
T d1p5qa1 15 IVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEE-AQKAQAL-------RLASHLNLAMCHLKLQAFSAAIESCN 86 (170)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHH-HHHHHHH-------HHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccchHH-Hhhhchh-------HHHHHHHHHHHHHhhhhcccccchhh
Confidence 455667789999999999999998754211111100000 0000000 12356667788888888888888888
Q ss_pred HHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHH
Q 036198 259 FMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEG 316 (499)
Q Consensus 259 ~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~ 316 (499)
...+.. +.+..+|..+..+|...|++++|...|+...+.. +-+......+-..
T Consensus 87 ~al~~~----p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~-P~n~~~~~~l~~~ 139 (170)
T d1p5qa1 87 KALELD----SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY-PNNKAAKTQLAVC 139 (170)
T ss_dssp HHHHHC----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHH
T ss_pred hhhhcc----ccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 888875 3467788888888888888888888888887763 2244444433333
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.68 E-value=0.00086 Score=53.66 Aligned_cols=122 Identities=7% Similarity=-0.016 Sum_probs=71.4
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHhhcCCCCChhhHHH---HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHH
Q 036198 180 LNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNI---LGMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAADL 256 (499)
Q Consensus 180 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~~~~~---la~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~ 256 (499)
...........|++++|.+.|.....-.+-+...... .+...-..+... -...+..+...+.+.|++++|+..
T Consensus 14 ~~~~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~~~~~~w~~~~r~~l~~~----~~~a~~~la~~~~~~g~~~~Al~~ 89 (179)
T d2ff4a2 14 EKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVED----KVLAHTAKAEAEIACGRASAVIAE 89 (179)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHH----HHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCcccccccCcchHHHHHHHHHHHHH----HHHHHHHHHHHHHHCCCchHHHHH
Confidence 3445567788999999999999977632111110000 011111111110 123455666677777777777777
Q ss_pred HHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----cCCCcCHHh
Q 036198 257 FEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMIN-----SGCLPDVST 309 (499)
Q Consensus 257 ~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~-----~~~~~~~~~ 309 (499)
++++.... +-+...|..++.++.+.|+..+|++.|+++.+ .|+.|+..+
T Consensus 90 ~~~al~~~----P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l 143 (179)
T d2ff4a2 90 LEALTFEH----PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 143 (179)
T ss_dssp HHHHHHHS----TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHhC----CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHHH
Confidence 77777664 45666777777777777777777777776533 466666544
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=97.59 E-value=0.0017 Score=50.33 Aligned_cols=120 Identities=7% Similarity=-0.070 Sum_probs=76.5
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcChhhHHHHHHHHHhcCCchHHHHHHHHHhHCCCCCCHHHHHHHHHHH
Q 036198 343 VTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMIDGL 422 (499)
Q Consensus 343 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~ 422 (499)
..+..-...+.+.|++.+|...|.+..+.- +... ............. ....+|..+..+|
T Consensus 18 ~~~~~~G~~~f~~~~y~~A~~~Y~~al~~~--~~~~-----------~~~~~~~~~~~~~-------~~~~~~~Nla~~~ 77 (153)
T d2fbna1 18 FDIKEEGNEFFKKNEINEAIVKYKEALDFF--IHTE-----------EWDDQILLDKKKN-------IEISCNLNLATCY 77 (153)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTT--TTCT-----------TCCCHHHHHHHHH-------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--cchh-----------hhhhHHHHHhhhh-------HHHHHHhhHHHHH
Confidence 345555667778888888888888776531 1000 0000000000000 1123566677778
Q ss_pred HhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcChhHHH
Q 036198 423 FDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHMRKFYNPVIAR 483 (499)
Q Consensus 423 ~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~ 483 (499)
.+.|++++|++.+++.++.. +.+..+|..+..++...|++++|...|++..+..|....-
T Consensus 78 ~~l~~~~~Al~~~~~al~~~-p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~~ 137 (153)
T d2fbna1 78 NKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDI 137 (153)
T ss_dssp HHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHH
T ss_pred HHhcccchhhhhhhcccccc-chhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Confidence 88888888888888887775 3367788888888888888888888888888877654443
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.59 E-value=0.0009 Score=53.54 Aligned_cols=124 Identities=12% Similarity=0.043 Sum_probs=77.2
Q ss_pred HHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHH
Q 036198 238 NTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGM 317 (499)
Q Consensus 238 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~ 317 (499)
..........|++++|.+.|.+.........-++. ..+.+ +...-..+.. .....+..+...+
T Consensus 15 ~~~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~~-----------~~~~w--~~~~r~~l~~----~~~~a~~~la~~~ 77 (179)
T d2ff4a2 15 KTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDL-----------RDFQF--VEPFATALVE----DKVLAHTAKAEAE 77 (179)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGG-----------TTSTT--HHHHHHHHHH----HHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhhCcccccccC-----------cchHH--HHHHHHHHHH----HHHHHHHHHHHHH
Confidence 33446778899999999999998875311011110 00110 0011111111 1234556677778
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHH-----HCCCCcChhh
Q 036198 318 CLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMI-----EVGCWPSVQT 379 (499)
Q Consensus 318 ~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~-----~~~~~~~~~~ 379 (499)
.+.|++++|...++.+.+... -+...|..++.+|.+.|+.++|.+.|+++. +.|+.|+..+
T Consensus 78 ~~~g~~~~Al~~~~~al~~~P-~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l 143 (179)
T d2ff4a2 78 IACGRASAVIAELEALTFEHP-YREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 143 (179)
T ss_dssp HHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHCCCchHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHHH
Confidence 888888888888888777643 367778888888888888888888887764 3577777654
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.52 E-value=0.00078 Score=50.56 Aligned_cols=54 Identities=9% Similarity=0.086 Sum_probs=22.0
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHH
Q 036198 315 EGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMI 369 (499)
Q Consensus 315 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 369 (499)
..+.+.|++++|.+.|.+.++.+.. +..+|..+..+|.+.|++++|...+++++
T Consensus 12 ~~~~~~~~y~~Ai~~y~~al~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~al 65 (128)
T d1elra_ 12 NDAYKKKDFDTALKHYDKAKELDPT-NMTYITNQAAVYFEKGDYNKCRELCEKAI 65 (128)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCcc-cHHHHHhHHHHHHHcCchHHHHHHHHHHH
Confidence 3344444444444444444333211 33344444444444444444444444433
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=97.50 E-value=0.003 Score=48.87 Aligned_cols=108 Identities=11% Similarity=-0.068 Sum_probs=76.3
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHhhcCCC-----CChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHH
Q 036198 179 ALNLLLDALCKCGLVDYAETICKRVKNKVK-----PNANTYNILGMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEA 253 (499)
Q Consensus 179 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-----p~~~~~~~la~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a 253 (499)
.+..-.+.+.+.|++++|...|.+.....+ ++.... .... .....+|+.+..+|.+.|++++|
T Consensus 19 ~~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~--------~~~~----~~~~~~~~Nla~~~~~l~~~~~A 86 (153)
T d2fbna1 19 DIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILL--------DKKK----NIEISCNLNLATCYNKNKDYPKA 86 (153)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHH--------HHHH----HHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCcchhhhhhHHHH--------Hhhh----hHHHHHHhhHHHHHHHhcccchh
Confidence 445556778899999999999998764211 111111 0000 01234677788888888888888
Q ss_pred HHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 036198 254 ADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSG 302 (499)
Q Consensus 254 ~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~ 302 (499)
++.++...+.. +.+..+|..+..++...|++++|...|+...+..
T Consensus 87 l~~~~~al~~~----p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~ 131 (153)
T d2fbna1 87 IDHASKVLKID----KNNVKALYKLGVANMYFGFLEEAKENLYKAASLN 131 (153)
T ss_dssp HHHHHHHHHHS----TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred hhhhhcccccc----chhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 88888888775 4577888888888888888888888888888763
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.49 E-value=0.0011 Score=49.68 Aligned_cols=95 Identities=11% Similarity=0.108 Sum_probs=63.8
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-cC-----HHhH
Q 036198 237 YNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCL-PD-----VSTY 310 (499)
Q Consensus 237 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~-~~-----~~~~ 310 (499)
+-.+...+.+.|++++|++.|.+..+.+ +.+..++..+..+|.+.|++++|...++.+.+.... +. ..+|
T Consensus 7 ~k~~G~~~~~~~~y~~Ai~~y~~al~~~----p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~ 82 (128)
T d1elra_ 7 EKELGNDAYKKKDFDTALKHYDKAKELD----PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAY 82 (128)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC----cccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 4456667777888888888888887765 346777777888888888888888888777653100 01 1345
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHh
Q 036198 311 KEVLEGMCLAGKVEEAYKFLEEMGN 335 (499)
Q Consensus 311 ~~ll~~~~~~g~~~~a~~~~~~m~~ 335 (499)
..+...+...+++++|.+.|+....
T Consensus 83 ~~lg~~~~~~~~~~~A~~~~~kal~ 107 (128)
T d1elra_ 83 ARIGNSYFKEEKYKDAIHFYNKSLA 107 (128)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHh
Confidence 5555666666777777777766544
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.43 E-value=0.0036 Score=49.33 Aligned_cols=124 Identities=12% Similarity=-0.055 Sum_probs=78.3
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHhhcCCCCChhhHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHhHHHHHHH
Q 036198 180 LNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQTLEEMIQMGHAP-DNFTYNTAIDTFCKARMVTEAADLFE 258 (499)
Q Consensus 180 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~~~~~la~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~a~~~~~ 258 (499)
+......+.+.|++++|++.|.+...-.+.+ ...........+.| ....|..+..++.+.|++++|+..++
T Consensus 30 ~~~~~~~~~~~~~y~~Ai~~y~~al~~~~~~--------~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~ 101 (169)
T d1ihga1 30 LKNIGNTFFKSQNWEMAIKKYTKVLRYVEGS--------RAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCL 101 (169)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH--------HHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhhhhh--------hhhhhhHHHHHhChhhHHHHHHHHHHHHhhcccchhhhhhh
Confidence 3445667888999999999998764310000 00000000001111 34466677788888888888888888
Q ss_pred HHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHH
Q 036198 259 FMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEG 316 (499)
Q Consensus 259 ~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~ 316 (499)
...+.. +.+..+|..+..++...|++++|...|+...+.. +.+......+..+
T Consensus 102 ~al~~~----p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~-p~n~~~~~~l~~~ 154 (169)
T d1ihga1 102 EALEID----PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELLKV 154 (169)
T ss_dssp HHHTTC----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred hhhhhh----hhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 888765 4567788888888888888888888888888763 2344444444433
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.36 E-value=0.0019 Score=51.00 Aligned_cols=127 Identities=10% Similarity=-0.111 Sum_probs=75.7
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHH
Q 036198 237 YNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEG 316 (499)
Q Consensus 237 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~ 316 (499)
+......+.+.|++++|++.|.+..+.. +. ........... .. -+.....|..+..+
T Consensus 30 ~~~~~~~~~~~~~y~~Ai~~y~~al~~~-----~~----------~~~~~~~~~~~-------~~-~~~~~~~~~nla~~ 86 (169)
T d1ihga1 30 LKNIGNTFFKSQNWEMAIKKYTKVLRYV-----EG----------SRAAAEDADGA-------KL-QPVALSCVLNIGAC 86 (169)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHH-----HH----------HHHHSCHHHHG-------GG-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhh-----hh----------hhhhhhhHHHH-------Hh-ChhhHHHHHHHHHH
Confidence 3455667788899999999988775421 00 00000000000 00 01234456666777
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcChhhHHHHHHHHH
Q 036198 317 MCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYF 388 (499)
Q Consensus 317 ~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~ 388 (499)
+.+.|++++|+..+....+... .+..+|..+..++...|++++|...|+...+... .+......+..+..
T Consensus 87 ~~~~~~~~~Ai~~~~~al~~~p-~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p-~n~~~~~~l~~~~~ 156 (169)
T d1ihga1 87 KLKMSDWQGAVDSCLEALEIDP-SNTKALYRRAQGWQGLKEYDQALADLKKAQEIAP-EDKAIQAELLKVKQ 156 (169)
T ss_dssp HHHTTCHHHHHHHHHHHHTTCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHH
T ss_pred HHhhcccchhhhhhhhhhhhhh-hhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHH
Confidence 7778888888888877777643 3666777777778888888888888887777531 23444444444433
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=97.35 E-value=0.0089 Score=46.91 Aligned_cols=112 Identities=6% Similarity=-0.101 Sum_probs=62.1
Q ss_pred HHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHhHHHHH
Q 036198 235 FTYNTAIDTFCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVL 314 (499)
Q Consensus 235 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll 314 (499)
..+......+.+.|++++|+..|+.....-......+.... .....+ ....|+.+.
T Consensus 16 ~~~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~~~-----------------~~~~~~-------~~~~~~Nla 71 (168)
T d1kt1a1 16 AIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKES-----------------KASESF-------LLAAFLNLA 71 (168)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHH-----------------HHHHHH-------HHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhccchhhh-----------------hhcchh-------HHHHHHhHH
Confidence 34556677788889999999888776642110011111100 000000 122344455
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 036198 315 EGMCLAGKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEV 371 (499)
Q Consensus 315 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 371 (499)
.+|.+.|++++|+..++...+.+. .+..+|..+..++...|++++|...|+++.+.
T Consensus 72 ~~~~~l~~~~~Ai~~~~~al~l~p-~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l 127 (168)
T d1kt1a1 72 MCYLKLREYTKAVECCDKALGLDS-ANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV 127 (168)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS
T ss_pred HHHHHhhhcccchhhhhhhhhccc-chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 566666666666666666655432 25556666666666666666666666666654
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=97.35 E-value=0.011 Score=46.33 Aligned_cols=121 Identities=10% Similarity=-0.044 Sum_probs=79.1
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHhhcC----CCCChhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHH
Q 036198 179 ALNLLLDALCKCGLVDYAETICKRVKNK----VKPNANTYNILGMQTLEEMIQMGHAPDNFTYNTAIDTFCKARMVTEAA 254 (499)
Q Consensus 179 ~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~p~~~~~~~la~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~ 254 (499)
.+......+.+.|++++|...|++...- ...+..... ..+.+ ....|+.+..+|.+.|++++|+
T Consensus 17 ~~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~~~~-----~~~~~-------~~~~~~Nla~~~~~l~~~~~Ai 84 (168)
T d1kt1a1 17 IVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESK-----ASESF-------LLAAFLNLAMCYLKLREYTKAV 84 (168)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHH-----HHHHH-------HHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhccchhhhh-----hcchh-------HHHHHHhHHHHHHHhhhcccch
Confidence 4566677899999999999999886431 111100000 00000 1234566777788888888888
Q ss_pred HHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHH
Q 036198 255 DLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEG 316 (499)
Q Consensus 255 ~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~ 316 (499)
..++...+.. +.+..+|..+..++...|++++|...|....+.. +.+......+-..
T Consensus 85 ~~~~~al~l~----p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~-P~n~~~~~~l~~~ 141 (168)
T d1kt1a1 85 ECCDKALGLD----SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN-PQNKAARLQIFMC 141 (168)
T ss_dssp HHHHHHHHHC----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHH
T ss_pred hhhhhhhhcc----cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 8888888765 4577788888888888888888888888887753 2334444433333
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.26 E-value=7.4e-05 Score=71.24 Aligned_cols=135 Identities=8% Similarity=-0.041 Sum_probs=72.6
Q ss_pred CCHhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHHH
Q 036198 248 RMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAY 327 (499)
Q Consensus 248 g~~~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~ 327 (499)
+.++.|+..+....... +++...+..+...+.+.|+.++|...+....+.. | ..++..+...+...|++++|.
T Consensus 100 ~~Y~~ai~~l~~~~~l~----~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--~-~~~~~~LG~l~~~~~~~~~A~ 172 (497)
T d1ya0a1 100 GFYTQLLQELCTVFNVD----LPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYI--C-QHCLVHLGDIARYRNQTSQAE 172 (497)
T ss_dssp HHHHHHHHHHTC-----------------------------------CCHHHHHH--H-HHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHHCCC----hhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCCC--H-HHHHHHHHHHHHHcccHHHHH
Confidence 34455554444333322 3455667777777778888888877776655431 1 345666778888888888888
Q ss_pred HHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcChhhHHHHHHHHHhcC
Q 036198 328 KFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELG 391 (499)
Q Consensus 328 ~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~ 391 (499)
..|.+..+.... +..+|+.+...+...|+..+|...|.+..... .|-..++..|...+.+..
T Consensus 173 ~~y~~A~~l~P~-~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~-~~~~~a~~nL~~~~~~~~ 234 (497)
T d1ya0a1 173 SYYRHAAQLVPS-NGQPYNQLAILASSKGDHLTTIFYYCRSIAVK-FPFPAASTNLQKALSKAL 234 (497)
T ss_dssp HHHHHHHHHCTT-BSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSS-BCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHCCC-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC-CCCHHHHHHHHHHHHHhh
Confidence 888888776432 55788888888888888888888888887754 366677777777766543
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=97.22 E-value=0.00047 Score=59.07 Aligned_cols=122 Identities=11% Similarity=0.001 Sum_probs=79.7
Q ss_pred HHhcCCHhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcC-HHhHHHHHHHHHhcCC
Q 036198 244 FCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPD-VSTYKEVLEGMCLAGK 322 (499)
Q Consensus 244 ~~~~g~~~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~ll~~~~~~g~ 322 (499)
..+.|++++|+..+++..+.. +-+...+..+...++..|++++|.+.++...+.. |+ ...+..+...+...+.
T Consensus 6 aL~~G~l~eAl~~l~~al~~~----P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~--P~~~~~~~~l~~ll~a~~~ 79 (264)
T d1zbpa1 6 ALSEGQLQQALELLIEAIKAS----PKDASLRSSFIELLCIDGDFERADEQLMQSIKLF--PEYLPGASQLRHLVKAAQA 79 (264)
T ss_dssp HTTTTCHHHHHHHHHHHHHTC----TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--GGGHHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHhccc
Confidence 346789999999999998875 5678899999999999999999999999988763 44 3344444444333333
Q ss_pred HHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 036198 323 VEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEV 371 (499)
Q Consensus 323 ~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 371 (499)
.+++..-...-...+.+++...+......+...|+.++|...++++.+.
T Consensus 80 ~~~a~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~ 128 (264)
T d1zbpa1 80 RKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL 128 (264)
T ss_dssp HHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred cHHHHHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc
Confidence 3322221111111122223334444556677889999999998888764
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.09 E-value=0.00031 Score=66.75 Aligned_cols=116 Identities=6% Similarity=-0.174 Sum_probs=61.0
Q ss_pred CHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcChhhHHHHHHHHHhcCCchHHHHHHHHHhHCCCCCCHHHHHHHHH
Q 036198 341 DIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETWHEMDKRGCAQDVDTYCVMID 420 (499)
Q Consensus 341 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~ 420 (499)
+...+..+...+.+.|+.+.|...+....... | ..++..+...+...|++++|...|++..+.. +-+...|+.+..
T Consensus 119 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--~-~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~-P~~~~~~~~Lg~ 194 (497)
T d1ya0a1 119 CRVKSSQLGIISNKQTHTSAIVKPQSSSCSYI--C-QHCLVHLGDIARYRNQTSQAESYYRHAAQLV-PSNGQPYNQLAI 194 (497)
T ss_dssp ------------------------CCHHHHHH--H-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTBSHHHHHHHH
T ss_pred hHHHHHHhHHHHHhCCCHHHHHHHHHHHhCCC--H-HHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCchHHHHHHHH
Confidence 44556666667777777777777666654421 1 2456667777777788888888887776652 224467777777
Q ss_pred HHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 036198 421 GLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIG 461 (499)
Q Consensus 421 ~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g 461 (499)
.+...|+..+|...|.+..... +|-..++..|...+.+..
T Consensus 195 ~~~~~~~~~~A~~~y~ral~~~-~~~~~a~~nL~~~~~~~~ 234 (497)
T d1ya0a1 195 LASSKGDHLTTIFYYCRSIAVK-FPFPAASTNLQKALSKAL 234 (497)
T ss_dssp HHHHTTCHHHHHHHHHHHHSSS-BCCHHHHHHHHHHHHHHT
T ss_pred HHHHcCCHHHHHHHHHHHHhCC-CCCHHHHHHHHHHHHHhh
Confidence 7777788888887777777665 356667777766665443
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.06 E-value=0.0033 Score=48.13 Aligned_cols=124 Identities=10% Similarity=0.105 Sum_probs=71.5
Q ss_pred hhhhHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHhhcCCCCC
Q 036198 131 KAKQFRLVCSMLDYMKRNNKVFVPVDVLLMILKQYTEKIKVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPN 210 (499)
Q Consensus 131 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~ 210 (499)
+.+.|++|...|+...+.. |.+..++..+..++...+++..+.+-.+.+.+
T Consensus 9 r~~~fe~A~~~~e~al~~~------------------------P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~----- 59 (145)
T d1zu2a1 9 RILLFEQIRQDAENTYKSN------------------------PLDADNLTRWGGVLLELSQFHSISDAKQMIQE----- 59 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHC------------------------TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHH-----
T ss_pred HHccHHHHHHHHHHHHhhC------------------------CcchHHHHHHHHHHHHhhhhhhhhHHHHHHHH-----
Confidence 7889999999999998876 34677888888888765544333222222211
Q ss_pred hhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC-----------HhHHHHHHHHHHHcCCCCCCCCHHHHHHHH
Q 036198 211 ANTYNILGMQTLEEMIQMGHAPDNFTYNTAIDTFCKARM-----------VTEAADLFEFMRTKGSTISSPTAKTYAIMI 279 (499)
Q Consensus 211 ~~~~~~la~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~-----------~~~a~~~~~~m~~~~~~~~~p~~~~~~~ll 279 (499)
|...++..++... -+..+|..+..+|...|+ +++|.+.|+...+.. |+...|..-+
T Consensus 60 -------Ai~~~~kAl~l~P-~~~~a~~~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l~-----P~~~~~~~~L 126 (145)
T d1zu2a1 60 -------AITKFEEALLIDP-KKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQ-----PDNTHYLKSL 126 (145)
T ss_dssp -------HHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHC-----TTCHHHHHHH
T ss_pred -------HHHHHHHHHHhcc-hhhHHHhhHHHHHHHcccchhhHHHHHHhHHHhhhhhhcccccC-----CCHHHHHHHH
Confidence 2233333333222 256677777777765443 466777777766643 4544444433
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcC
Q 036198 280 VALVQNDRMEECFSLLGHMINSG 302 (499)
Q Consensus 280 ~~~~~~~~~~~a~~~~~~m~~~~ 302 (499)
..+ .+|.+++.+..+.|
T Consensus 127 ~~~------~ka~~~~~e~~k~~ 143 (145)
T d1zu2a1 127 EMT------AKAPQLHAEAYKQG 143 (145)
T ss_dssp HHH------HTHHHHHHHHHHSS
T ss_pred HHH------HHHHHHHHHHHHHh
Confidence 332 34555555555544
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=96.99 E-value=0.00055 Score=58.63 Aligned_cols=51 Identities=22% Similarity=0.324 Sum_probs=25.3
Q ss_pred HcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 036198 284 QNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGN 335 (499)
Q Consensus 284 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~ 335 (499)
+.|++++|...+++..+.. +.+...+..+...++..|++++|.+.++...+
T Consensus 8 ~~G~l~eAl~~l~~al~~~-P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~ 58 (264)
T d1zbpa1 8 SEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIK 58 (264)
T ss_dssp TTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3455555555555555442 33444455555555555555555555555444
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=96.89 E-value=0.0041 Score=47.60 Aligned_cols=73 Identities=7% Similarity=-0.064 Sum_probs=45.0
Q ss_pred HHhcCCHhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcC----------CHHHHHHHHHHHHHcCCCcCHHhHHHH
Q 036198 244 FCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQND----------RMEECFSLLGHMINSGCLPDVSTYKEV 313 (499)
Q Consensus 244 ~~~~g~~~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~----------~~~~a~~~~~~m~~~~~~~~~~~~~~l 313 (499)
|-+.+.+++|++.|+...+.. +.+..++..+..++...+ .+++|...|++..+.. +.+..+|..+
T Consensus 7 ~~r~~~fe~A~~~~e~al~~~----P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~-P~~~~a~~~l 81 (145)
T d1zu2a1 7 FDRILLFEQIRQDAENTYKSN----PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID-PKKDEAVWCI 81 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred HHHHccHHHHHHHHHHHHhhC----CcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhc-chhhHHHhhH
Confidence 344556888888888888875 456777777777766433 3455666666666553 3345555555
Q ss_pred HHHHHhcC
Q 036198 314 LEGMCLAG 321 (499)
Q Consensus 314 l~~~~~~g 321 (499)
..+|...|
T Consensus 82 G~~y~~~g 89 (145)
T d1zu2a1 82 GNAYTSFA 89 (145)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHcc
Confidence 55554443
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=96.63 E-value=0.015 Score=44.86 Aligned_cols=65 Identities=11% Similarity=0.026 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHC-----CCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhc
Q 036198 413 DTYCVMIDGLFDCSKVEEACFLLEEVVNK-----GLKLP-----YRKFDSYLMQLSVIGDLGAIHKLSDHMRKFY 477 (499)
Q Consensus 413 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~-----~~~p~-----~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~ 477 (499)
.+|+.+..+|...|++++|...+++..+. ...++ ...+..+..+|...|++++|.+.|++..+..
T Consensus 56 ~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~ 130 (156)
T d2hr2a1 56 FCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMI 130 (156)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34555666666666666666666655431 11111 1245566677777777777777777766543
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=96.59 E-value=0.027 Score=43.35 Aligned_cols=62 Identities=19% Similarity=0.052 Sum_probs=33.9
Q ss_pred HHHHH--HHHHHhcCCHhHHHHHHHHHHHcCCCCCCCC----------HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 036198 236 TYNTA--IDTFCKARMVTEAADLFEFMRTKGSTISSPT----------AKTYAIMIVALVQNDRMEECFSLLGHMI 299 (499)
Q Consensus 236 ~~~~l--i~~~~~~g~~~~a~~~~~~m~~~~~~~~~p~----------~~~~~~ll~~~~~~~~~~~a~~~~~~m~ 299 (499)
+|..+ ...+...|++++|++.|++..+.... .|+ ..+|+.+..+|...|++++|...+++..
T Consensus 9 a~~~l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~--~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al 82 (156)
T d2hr2a1 9 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHT--MPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKAL 82 (156)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTT--SCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhChh--hhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhh
Confidence 44444 34455667777777777777653321 111 2345555555666666666655555544
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.15 E-value=0.028 Score=38.97 Aligned_cols=69 Identities=7% Similarity=-0.069 Sum_probs=43.9
Q ss_pred CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCC--CCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 036198 233 DNFTYNTAIDTFCKARMVTEAADLFEFMRTKGSTI--SSPT-AKTYAIMIVALVQNDRMEECFSLLGHMINS 301 (499)
Q Consensus 233 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~--~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~ 301 (499)
+...+-.+...+.+.|++++|+..|++..+..... ..++ ..+++.+..++.+.|++++|...+++..+.
T Consensus 4 saddc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l 75 (95)
T d1tjca_ 4 TAEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (95)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHh
Confidence 34445566777777788888877777765532100 1112 456677777777777777777777777765
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.94 E-value=0.041 Score=38.07 Aligned_cols=65 Identities=9% Similarity=0.040 Sum_probs=35.1
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHHCC-----CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcChhH
Q 036198 417 VMIDGLFDCSKVEEACFLLEEVVNKG-----LKLP-YRKFDSYLMQLSVIGDLGAIHKLSDHMRKFYNPVI 481 (499)
Q Consensus 417 ~li~~~~~~g~~~~a~~~~~~m~~~~-----~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~ 481 (499)
.+...+.+.|++++|...|++..+.. ..++ ..++..+..++.+.|++++|.+.+++..+..|...
T Consensus 10 ~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~ 80 (95)
T d1tjca_ 10 ELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQ 80 (95)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCH
Confidence 44455555666666666665554321 1111 34555566666666666666666666666555443
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=95.72 E-value=0.21 Score=35.72 Aligned_cols=64 Identities=14% Similarity=0.004 Sum_probs=35.3
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcC
Q 036198 414 TYCVMIDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHMRKFYN 478 (499)
Q Consensus 414 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~ 478 (499)
.+...++.+..+|+-+...++.+++.+.+ +|++...-.+..||.+.|+..++.+++.+..+.+.
T Consensus 88 ~vdlALd~lv~~~kkd~Ld~i~~~l~kn~-~i~~~~llkia~A~kkig~~re~nell~~ACe~G~ 151 (161)
T d1wy6a1 88 HVNKALDILVIQGKRDKLEEIGREILKNN-EVSASILVAIANALRRVGDERDATTLLIEACKKGE 151 (161)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHC--C-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhH
Confidence 34444555555666666666666554433 45555555666666666666666666666555443
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=95.40 E-value=0.26 Score=36.20 Aligned_cols=110 Identities=8% Similarity=0.001 Sum_probs=50.9
Q ss_pred CHhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHh----cCCHH
Q 036198 249 MVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCL----AGKVE 324 (499)
Q Consensus 249 ~~~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~----~g~~~ 324 (499)
++++|.++|++..+.|. +. ....+. .....+.++|..++.+..+.| +......|-..|.. ..+.+
T Consensus 8 d~~~A~~~~~kaa~~g~----~~--a~~~l~--~~~~~~~~~a~~~~~~aa~~g---~~~a~~~Lg~~y~~g~~~~~d~~ 76 (133)
T d1klxa_ 8 DLKKAIQYYVKACELNE----MF--GCLSLV--SNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLR 76 (133)
T ss_dssp HHHHHHHHHHHHHHTTC----TT--HHHHHH--TCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHH
T ss_pred CHHHHHHHHHHHHHCCC----hh--hhhhhc--cccccCHHHHHHHHhhhhccc---chhhhhhHHHhhhhccccchhhH
Confidence 45667777777666651 11 122221 122345566666666655554 22333333333332 23455
Q ss_pred HHHHHHHHHHhCCCCCCHhhHHHHHHHHHH----cCCHHHHHHHHHHHHHCC
Q 036198 325 EAYKFLEEMGNKGYPPDIVTYNCFLKVLCD----NKNGDEALRLYGRMIEVG 372 (499)
Q Consensus 325 ~a~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~ 372 (499)
+|.+.|+...+.| ++.....|-..|.. ..+.++|.++|+...+.|
T Consensus 77 ~A~~~~~~aa~~g---~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G 125 (133)
T d1klxa_ 77 KAAQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 125 (133)
T ss_dssp HHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHhhhhccC---cchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCC
Confidence 5555555555544 22333333333333 234555555555555444
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=95.27 E-value=0.35 Score=35.46 Aligned_cols=48 Identities=4% Similarity=-0.101 Sum_probs=21.5
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhhc
Q 036198 427 KVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSV----IGDLGAIHKLSDHMRKFY 477 (499)
Q Consensus 427 ~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~m~~~~ 477 (499)
+.++|.++|++..+.| ++.....|...|.. ..|.++|.+++++..+.+
T Consensus 74 d~~~A~~~~~~aa~~g---~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G 125 (133)
T d1klxa_ 74 DLRKAAQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 125 (133)
T ss_dssp CHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred hhHHHHHHHhhhhccC---cchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCC
Confidence 4455555555555444 22233333333332 234555555555554443
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=94.62 E-value=0.48 Score=33.79 Aligned_cols=137 Identities=16% Similarity=0.136 Sum_probs=73.5
Q ss_pred HHhcCCHhHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHH---hHHHHHHHHHhc
Q 036198 244 FCKARMVTEAADLFEFMRTKGSTISSPTAKTYAIMIVALVQNDRMEECFSLLGHMINSGCLPDVS---TYKEVLEGMCLA 320 (499)
Q Consensus 244 ~~~~g~~~~a~~~~~~m~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~---~~~~ll~~~~~~ 320 (499)
+.-.|.+++..++..+..... +..-||-+|--....-+-+...++++.+-+. .|.. -...++.++...
T Consensus 12 ~ildG~ve~Gveii~k~~~ss------~~~E~NW~ICNiidt~dC~~v~~~Ld~IG~~---FDls~C~Nlk~vv~C~~~~ 82 (161)
T d1wy6a1 12 FLLDGYIDEGVKIVLEITKSS------TKSEYNWFICNLLESIDCRYMFQVLDKIGSY---FDLDKCQNLKSVVECGVIN 82 (161)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS------CHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG---SCGGGCSCTHHHHHHHHHT
T ss_pred HHHhhhHHhHHHHHHHHcccC------CccccceeeeecccccchHHHHHHHHHHhhh---cCchhhhcHHHHHHHHHHh
Confidence 445688888888888887654 4556666666666666666667766665432 1111 011222222222
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcChhhHHHHHHHHHhcCCchHHHHHH
Q 036198 321 GKVEEAYKFLEEMGNKGYPPDIVTYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEPDGAFETW 400 (499)
Q Consensus 321 g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~ 400 (499)
+. +.......++...++|+-+.-.++++.+.+.+ ++++...-.+..+|.+.|...++-+++
T Consensus 83 n~------------------~se~vdlALd~lv~~~kkd~Ld~i~~~l~kn~-~i~~~~llkia~A~kkig~~re~nell 143 (161)
T d1wy6a1 83 NT------------------LNEHVNKALDILVIQGKRDKLEEIGREILKNN-EVSASILVAIANALRRVGDERDATTLL 143 (161)
T ss_dssp TC------------------CCHHHHHHHHHHHHTTCHHHHHHHHHHHC--C-CSCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cc------------------hHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcchhhHHHHH
Confidence 21 23344444555555555555555555544422 345555555555555555555555555
Q ss_pred HHHhHCCC
Q 036198 401 HEMDKRGC 408 (499)
Q Consensus 401 ~~m~~~~~ 408 (499)
.+.-+.|+
T Consensus 144 ~~ACe~G~ 151 (161)
T d1wy6a1 144 IEACKKGE 151 (161)
T ss_dssp HHHHHTTC
T ss_pred HHHHHHhH
Confidence 55555554
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=91.38 E-value=4.8 Score=36.16 Aligned_cols=328 Identities=9% Similarity=-0.037 Sum_probs=189.1
Q ss_pred CCHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhCCC
Q 036198 113 HEPLAYNLMIDILSSTKYKAKQFRLVCSMLDYMKRNNKVFVPVDVLLMILKQYTEKIKVKTQPEINALNLLLDALCKCGL 192 (499)
Q Consensus 113 ~~~~~~~~li~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 192 (499)
.+...-.....+.. ..|+-+.|...+...-..|...++. -..+++.+.. +..++...+-.-+......|+
T Consensus 100 ~~~~~~c~~~~A~~----~~g~~~~a~~~~~~lW~~~~~~p~~--c~~l~~~~~~----~~~lt~~~~~~R~~~~l~~~~ 169 (450)
T d1qsaa1 100 GTTEAQCNYYYAKW----NTGQSEEAWQGAKELWLTGKSQPNA--CDKLFSVWRA----SGKQDPLAYLERIRLAMKAGN 169 (450)
T ss_dssp SSHHHHHHHHHHHH----HTTCHHHHHHHHHHHHSCSSCCCTH--HHHHHHHHHH----TTCSCHHHHHHHHHHHHHTTC
T ss_pred CCHHHHHHHHHHHH----HcCChHHHHHHHHHHHhcCCCCchH--HHHHHHHHHh----cCCCCHHHHHHHHHHHHHcCC
Confidence 45555555666677 7888889998888887777443332 2222222221 234566666677777788899
Q ss_pred hHHHHHHHHHhhcCCCCChhhHHHH---HHHHHHHHHHcCCCCCHHHHHHHHHHHHh--cCCHhHHHHHHHHHHHcCCCC
Q 036198 193 VDYAETICKRVKNKVKPNANTYNIL---GMQTLEEMIQMGHAPDNFTYNTAIDTFCK--ARMVTEAADLFEFMRTKGSTI 267 (499)
Q Consensus 193 ~~~A~~~~~~m~~~~~p~~~~~~~l---a~~~~~~m~~~g~~p~~~~~~~li~~~~~--~g~~~~a~~~~~~m~~~~~~~ 267 (499)
...|..+...+.....+-...+..+ ...+...... ..++......+..++.+ ..+.+.|..++.......
T Consensus 170 ~~~a~~l~~~l~~~~~~~~~a~~~l~~~p~~~~~~~~~--~~~~~~~~~~~~~~l~rla~~d~~~a~~~l~~~~~~~--- 244 (450)
T d1qsaa1 170 TGLVTVLAGQMPADYQTIASAIISLANNPNTVLTFART--TGATDFTRQMAAVAFASVARQDAENARLMIPSLAQAQ--- 244 (450)
T ss_dssp HHHHHHHHHTCCGGGHHHHHHHHHHHHCGGGHHHHHHH--SCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHT---
T ss_pred hhhHHHHHhhCChhHHHHHHHHHHHHhChHhHHHHHhc--CCCChhhhHHHHHHHHHHhccChhHHHHHHHhhhhcc---
Confidence 9988888776543211111111111 1111111111 12233333333334333 256788888888877654
Q ss_pred CCCCHHHHHHHHHHH----HHcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHh
Q 036198 268 SSPTAKTYAIMIVAL----VQNDRMEECFSLLGHMINSGCLPDVSTYKEVLEGMCLAGKVEEAYKFLEEMGNKGYPPDIV 343 (499)
Q Consensus 268 ~~p~~~~~~~ll~~~----~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~ 343 (499)
..+..-+..+-... ...+..+.+...+......+ .+.......+......+++..+...+..|..... ....
T Consensus 245 -~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~w~~~~al~~~~~~~~~~~~~~l~~~~~-~~~r 320 (450)
T d1qsaa1 245 -QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS--QSTSLIERRVRMALGTGDRRGLNTWLARLPMEAK-EKDE 320 (450)
T ss_dssp -TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHSCTTGG-GSHH
T ss_pred -cccHHHHHHHHHHHHHHHHHcCchHHHHHHHHhhcccc--cchHHHHHHHHHHHHcCChHHHHHHHHhcCcccc-cHHH
Confidence 22333333333222 33566777888887776654 3445555566667788999999999988754322 1233
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcChhhHHHHHHHHHhcCCc-hHHHHHHHHHhHCCCCCC-HH---HHHHH
Q 036198 344 TYNCFLKVLCDNKNGDEALRLYGRMIEVGCWPSVQTYNMLISMYFELGEP-DGAFETWHEMDKRGCAQD-VD---TYCVM 418 (499)
Q Consensus 344 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~-~~a~~~~~~m~~~~~~p~-~~---~~~~l 418 (499)
..-=+..++...|+.+.|...|...... ++ |-..+.+- +.|.. .-... .....+. .. .-..-
T Consensus 321 ~~YW~gRa~~~~G~~~~A~~~~~~~a~~---~~---fYG~LAa~-~Lg~~~~~~~~------~~~~~~~~~~~~~~~~~r 387 (450)
T d1qsaa1 321 WRYWQADLLLERGREAEAKEILHQLMQQ---RG---FYPMVAAQ-RIGEEYELKID------KAPQNVDSALTQGPEMAR 387 (450)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTS---CS---HHHHHHHH-HTTCCCCCCCC------CCCSCCCCHHHHSHHHHH
T ss_pred HHHHHHHHHHHcCChhhHHHHHHHHhcC---CC---hHHHHHHH-HcCCCCCCCcC------CCCccHHHhhhcChHHHH
Confidence 3344567888999999999999988642 33 43333322 22321 10000 0000000 00 01133
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 036198 419 IDGLFDCSKVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHMRK 475 (499)
Q Consensus 419 i~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~ 475 (499)
+..+...|+...|...+..+... .+......+.....+.|.++.|+....+...
T Consensus 388 a~~L~~~g~~~~A~~e~~~l~~~---~~~~~~~~la~lA~~~g~~~~aI~a~~~~~~ 441 (450)
T d1qsaa1 388 VRELMYWNLDNTARSEWANLVKS---KSKTEQAQLARYAFNNQWWDLSVQATIAGKL 441 (450)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTT---CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC
T ss_pred HHHHHHcCCchHHHHHHHHHHhC---CCHHHHHHHHHHHHHCCChhHHHHHHHHHHc
Confidence 55677889999999999888754 3566777888888999999999988777643
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=90.61 E-value=1.3 Score=31.55 Aligned_cols=71 Identities=7% Similarity=0.042 Sum_probs=40.6
Q ss_pred CCHHHHHHHHHHHHhCC---CHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcChhH
Q 036198 410 QDVDTYCVMIDGLFDCS---KVEEACFLLEEVVNKGLKLP-YRKFDSYLMQLSVIGDLGAIHKLSDHMRKFYNPVI 481 (499)
Q Consensus 410 p~~~~~~~li~~~~~~g---~~~~a~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~ 481 (499)
|+..+--....+++++. +++++..++++..+.+. .+ ...+..+.-+|.+.|++++|.++++.+.+..|...
T Consensus 33 ~s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p-~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~ 107 (124)
T d2pqrb1 33 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAE-SRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNK 107 (124)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCG-GGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCH
T ss_pred CCcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCc-hhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCcH
Confidence 44444444455555443 34566677766665431 12 23455566667777777777777777776655543
|
| >d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Cytochrome c oxidase subunit E family: Cytochrome c oxidase subunit E domain: Cytochrome c oxidase subunit E species: Cow (Bos taurus) [TaxId: 9913]
Probab=90.15 E-value=1.8 Score=29.13 Aligned_cols=51 Identities=12% Similarity=0.055 Sum_probs=37.9
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhc
Q 036198 427 KVEEACFLLEEVVNKGLKLPYRKFDSYLMQLSVIGDLGAIHKLSDHMRKFY 477 (499)
Q Consensus 427 ~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~ 477 (499)
+.=++.+-++.+....+.|++....+.++||.+.+++..|.++++.++..-
T Consensus 21 D~we~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~K~ 71 (105)
T d1v54e_ 21 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA 71 (105)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh
Confidence 444566666666677777888888888888888888888888888777554
|
| >d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Cytochrome c oxidase subunit E family: Cytochrome c oxidase subunit E domain: Cytochrome c oxidase subunit E species: Cow (Bos taurus) [TaxId: 9913]
Probab=90.11 E-value=1.4 Score=29.61 Aligned_cols=62 Identities=19% Similarity=0.198 Sum_probs=48.3
Q ss_pred hcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHhhcCCCCChhhHHHHHHHHHHHHHHcCCC
Q 036198 170 KVKTQPEINALNLLLDALCKCGLVDYAETICKRVKNKVKPNANTYNILGMQTLEEMIQMGHA 231 (499)
Q Consensus 170 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~~~~~la~~~~~~m~~~g~~ 231 (499)
...+.|+..+..+.+++|-+.+++.-|.++|+-++.++.++...|..+..++=--+.+.|++
T Consensus 34 ~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~K~~~~k~~y~yilqelkptl~ELGI~ 95 (105)
T d1v54e_ 34 GYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVIQELRPTLNELGIS 95 (105)
T ss_dssp TSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHHHHHTCC
T ss_pred ccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHhhHHHHhCCC
Confidence 34578999999999999999999999999999999876666666666655555555555653
|