Citrus Sinensis ID: 036199
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 710 | 2.2.26 [Sep-21-2011] | |||||||
| O23225 | 718 | U-box domain-containing p | yes | no | 0.916 | 0.906 | 0.381 | 1e-121 | |
| Q9CAG5 | 782 | U-box domain-containing p | no | no | 0.946 | 0.859 | 0.303 | 1e-80 | |
| O48700 | 771 | U-box domain-containing p | no | no | 0.9 | 0.828 | 0.297 | 2e-77 | |
| Q9C7G1 | 768 | U-box domain-containing p | no | no | 0.885 | 0.819 | 0.308 | 2e-75 | |
| Q9SNC6 | 660 | U-box domain-containing p | no | no | 0.832 | 0.895 | 0.253 | 5e-40 | |
| Q9ZV31 | 654 | U-box domain-containing p | no | no | 0.829 | 0.900 | 0.244 | 2e-28 | |
| Q9C9A6 | 628 | U-box domain-containing p | no | no | 0.522 | 0.590 | 0.269 | 1e-27 | |
| Q5VRH9 | 611 | U-box domain-containing p | no | no | 0.511 | 0.594 | 0.282 | 1e-26 | |
| Q8VZ40 | 632 | U-box domain-containing p | no | no | 0.514 | 0.577 | 0.276 | 2e-22 | |
| Q9C7R6 | 729 | U-box domain-containing p | no | no | 0.767 | 0.747 | 0.238 | 9e-20 |
| >sp|O23225|PUB5_ARATH U-box domain-containing protein 5 OS=Arabidopsis thaliana GN=PUB5 PE=2 SV=3 | Back alignment and function desciption |
|---|
Score = 436 bits (1121), Expect = e-121, Method: Compositional matrix adjust.
Identities = 285/748 (38%), Positives = 407/748 (54%), Gaps = 97/748 (12%)
Query: 15 PTSFKVHHGMCTQLSKFVERIAKVFPEIEAARPRCSSGVQALCLLNNAIGKAKSLLQYCS 74
P S+K+H MC +L + V+RI ++FP+IE ARP CSSG+Q LCLL+NA+ K K LLQYCS
Sbjct: 10 PQSYKMHSSMCLELKRLVDRIMRIFPDIEDARPGCSSGIQTLCLLHNALDKTKQLLQYCS 69
Query: 75 ESSKLYLAITGGVIVSRCMRSTNMMEQSLSQIESMVPVMLAVEISQIIDDLREATFILDS 134
ESSKLY+A+TG I++R R+ +EQ L+ I S+VP +L ++ISQI+ DLR L+
Sbjct: 70 ESSKLYMAVTGDAILARGSRAKKSLEQCLNDIRSIVPTILEIKISQIVQDLRSTQLTLEF 129
Query: 135 SDEEAGKVLRELLQEDVSAIDSLEFSEIKALQLAASRLCITSPKAILIEKRSIKKLLDKV 194
S+EEAGK +REL+Q+ S+ S + EIK AA +L +++P+AI+ E+RS+K + +
Sbjct: 130 SEEEAGKAIRELMQKSTSSSASPD--EIKDFHYAALKLQLSTPEAIVTERRSLKIICE-- 185
Query: 195 GDSDQSKIKVLKYLFYLLKKYGNSVLGEQKDNACAQEEGSYTVCSQSFEVDSRVGDRKFG 254
+ K N+ + +D +
Sbjct: 186 ---------------------------DHKQNSFTHHQS----------IDDSLHANAAE 208
Query: 255 AQTNNLSRAIIPEVFKCPLSLRLMYDPVVIESGQTFERMWIQKWFEEGNHTCPKTKMKLV 314
A+ + +PE FKC LS +MYDPV+I SG TFERM IQKWF+EGN +CP +K KL
Sbjct: 209 AEASEEHNGTLPEKFKCTLSRTVMYDPVIISSGNTFERMQIQKWFDEGNDSCPISKRKLD 268
Query: 315 CQSLTPNTAMKDLISKWCMNLCSSMND---LHVP------LDISNMSLGS-----LDTSY 360
+L PN +K IS+WC + D HV +S S GS D S
Sbjct: 269 DFTLKPNVELKSQISEWCAKNGLDVQDPARKHVKASNSIDFSVSIASFGSSLYNIPDHSG 328
Query: 361 GSDTSSN-----------KIADGSNRTPLW-----TNVHDIDLSR----------LTELN 394
S T N K++ G TP+ + D D S LT L
Sbjct: 329 ISITDFNSSYSIDSSSYSKMSKGGYFTPMQRIDSASGAGDTDSSHSEIEIDPLCGLTNLP 388
Query: 395 WDCQCKVIEDYETRLEHDNQVSHSLSSTNFVEPLIRFLRDARDLHDSRAQRI--GCRLLL 452
WD Q KV+ED +R EH + S+S + F+EPLI +L++A + + + + I G LLL
Sbjct: 389 WDAQIKVVEDVRSRFEHSTRAFRSMSPSKFLEPLITYLKNALERNGTAGEIIKGGLDLLL 448
Query: 453 AFVSKNRSGIPYLNEDLFSLLASFLHSAAATEETLAILVALSSYAYFISKIVASGALASI 512
AF+S NR I L E++F + + FL S EE L IL LS++ + SKI +SG+L+S+
Sbjct: 449 AFLSGNRRAIESLEEEVFKMFSVFLESEVVAEEALNILEVLSNHPHGPSKITSSGSLSSL 508
Query: 513 LNMLDSPNGKFQELAIKILHNLSSDVDIQSHIAPSEFLPKLVPFLKDATLAVSCLVILKN 572
L +++S QE A+ L NLSS ++I + +F+ KL FL+ ++ILKN
Sbjct: 509 LKIVESQAEHLQEQAMITLKNLSSSMEICLEMVSLDFIQKLTSFLQQKVFCKHSIIILKN 568
Query: 573 MCNTEHARVCVVETSGCLPSVAELLEIGSEEDQEHAVAILLCLCSQRDQYCKLVMNEG-- 630
+C+TE R C+ ET CL S+AELLE E+QE+A++ILL LC Q+ +YC LV+ E
Sbjct: 569 LCSTEKGRGCITETPDCLASIAELLESNVPEEQENAISILLQLCVQKIEYCCLVVREATD 628
Query: 631 VIPSLVKISVYGNDKAKVSALELRRLLRDVAYSVEQQCFGSEIDTSKDASS--------- 681
+ SL+ IS G ++ KVSA EL R L +V E++ S + +S
Sbjct: 629 IYSSLILISNNGTEEVKVSASELLRALVEVDSDKEEEEEVSSRPEGRTTASPTSQVVTPV 688
Query: 682 ---DPRKEKPSSKTSRIFGWKFPKLSKK 706
+P K PS K S +FG+ F L KK
Sbjct: 689 THPEPVKITPSPKKSGLFGFNFSSLKKK 716
|
Functions as an E3 ubiquitin ligase. Arabidopsis thaliana (taxid: 3702) EC: 6EC: .EC: 3EC: .EC: 2EC: .EC: - |
| >sp|Q9CAG5|PUB7_ARATH U-box domain-containing protein 7 OS=Arabidopsis thaliana GN=PUB7 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 301 bits (771), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 227/747 (30%), Positives = 371/747 (49%), Gaps = 75/747 (10%)
Query: 4 DESEIVEIWSSPTSFKVHHGMCTQLSKFVERIAKVFPEIEAARPRCSSGVQALCLLNNAI 63
D +E+ E + + K+H MC +LS + ++ +FP +E ARPR SG+QALC L+ A+
Sbjct: 2 DVTELEENLFAASDAKLHGDMCKELSGVLCKVLSIFPSLEGARPRSKSGIQALCSLHIAL 61
Query: 64 GKAKSLLQYCSESSKLYLAITGGVIVSRCMRSTNMMEQSLSQIESMVPVMLAVEISQIID 123
KAK++LQ+CSE SKLYLAITG ++ + ++ + L ++E +VP + +I +I+
Sbjct: 62 EKAKNILQHCSECSKLYLAITGDAVLLKFEKAKIALIDGLKRVEDIVPSSIGSQILEIVG 121
Query: 124 DLREATFILDSSDEEAGKVLRELLQEDVSAIDSLEFSEIKALQLAASRLCITSPKAILIE 183
+L F+LD S++E G + LLQ+ + + +E++ AA+RL ITS + L E
Sbjct: 122 ELENTRFMLDPSEKEVGDQIIALLQQGKKFDNCNDNTELEIFHRAATRLSITSSRVALAE 181
Query: 184 KRSIKKLLDKV-GDSDQSKIKVLKYLFYLLKK----YGNSVLGEQKDNA---CAQEEGSY 235
+R++KKL+D+ + D+ K ++ YL +L++K + + +L E C+ E
Sbjct: 182 RRALKKLIDRARAEEDKRKESIVAYLLHLMRKCSKLFRSEILDENDSPGSYPCSPNEDHG 241
Query: 236 TVCSQSFEVDSRVG--DRKFGAQTNNLSRAIIPEVFKCPLSLRLMYDPVVIESGQTFERM 293
+V ++ SR G + K N+ + PE +CP+SL+LM DPV+I SGQT+ER+
Sbjct: 242 SVHGFGRQL-SRFGSLNDKPMNSINSGQMPVPPEELRCPISLQLMCDPVIIASGQTYERV 300
Query: 294 WIQKWFEEGNHTCPKTKMKLVCQSLTPNTAMKDLISKWCMNLCSSMNDLHVP------LD 347
I+KWF +G++TCPKT+ +L SLTPN +K LI+ WC N +P D
Sbjct: 301 CIEKWFSDGHNTCPKTQQQLPHISLTPNNCVKGLIASWC-----EQNGTQIPSGPPESQD 355
Query: 348 ISNMSLGSLDTSYGSDTSSNKIAD----GSNRTPLWTNVHDIDLSRLTELNW-------- 395
+ L D+ S N I G PL N + + TE ++
Sbjct: 356 LDYWRLALSDSESTKSQSVNSIGSYKLKGVKIVPLEENGTTVVERQNTEESFVSDDDDEE 415
Query: 396 -----------------------DCQCKVIEDYETRLEHDNQVSHSLSSTNFVEPLIRFL 432
+ +CKV+E L+ D + + + FVE L+RFL
Sbjct: 416 DSDINVLERYQDLLAVLNEEEGLEKKCKVVEKIRLLLKDDEEARIFMGANGFVEALLRFL 475
Query: 433 RDARDLHDSRAQRIGCRLLLAF-VSKNRSGIPYLNEDLFSLLASFLHSAAATEETLAILV 491
A D +++ AQ G L V+ NR+ L + LL + SA + A+ +
Sbjct: 476 GSAVDDNNAAAQDSGAMALFNLAVNNNRNKELMLTSGVIRLLEKMISSAESHGSATALYL 535
Query: 492 ALSSYAYFISKIVASGALASILNMLDSPNGKFQEL-AIKILHNLSSDVDIQSHIAPSEFL 550
LS S I +S A+ ++ +L +L A+ L+NLS+ + S +
Sbjct: 536 NLSCLDEAKSVIGSSQAVPFLVQLLQKEIETQCKLDALHALYNLSTYSPNIPALLSSNII 595
Query: 551 PKLVPFLKDATLAV---SCLVILKNMCNTEHARVCVVETSGCLPSVAELLEIGSEEDQEH 607
L L + L +L N+ +++ + V + G + S+A +L++G +QE
Sbjct: 596 KSLQGLLASTGENLWIEKSLAVLLNLASSQEGKDEAVSSQGMISSLATVLDMGDTTEQEQ 655
Query: 608 AVAILLCLCSQRDQYCKLVMNEGVIPSLVKISVYGNDKAKVSALELRRLLRDVAYSVEQQ 667
AV+ LL LC+ R+ ++V+ EGVIPSLV ISV G + + + +L L R+ E+Q
Sbjct: 656 AVSCLLILCNGRESCIQMVLQEGVIPSLVSISVNGTPRGREKSQKLLMLFRE-----ERQ 710
Query: 668 CFGSEIDTSKDASSDPRKEKPSSKTSR 694
+D S R E P + +R
Sbjct: 711 --------QRDQPSSNRDEPPQKEPAR 729
|
Functions as an E3 ubiquitin ligase. Arabidopsis thaliana (taxid: 3702) EC: 6 EC: . EC: 3 EC: . EC: 2 EC: . EC: - |
| >sp|O48700|PUB6_ARATH U-box domain-containing protein 6 OS=Arabidopsis thaliana GN=PUB6 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 290 bits (743), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 215/722 (29%), Positives = 362/722 (50%), Gaps = 83/722 (11%)
Query: 4 DESEIVEIWSSPTSFKVHHGMCTQLSKFVERIAKVFPEIEAARPRCSSGVQALCLLNNAI 63
D SE+ E + + K+H MC +LS ++ +FP +E ARPR SG+Q LC L+ A+
Sbjct: 2 DVSELEENLFAASDAKLHGDMCKELSAVYCKVLSIFPSLEEARPRSKSGIQTLCSLHIAL 61
Query: 64 GKAKSLLQYCSESSKLYLAITGGVIVSRCMRSTNMMEQSLSQIESMVPVMLAVEISQIID 123
KAK++LQ+CSE SKLYLAITG ++ + ++ + + SL ++E +VP + +I I+
Sbjct: 62 EKAKNILQHCSECSKLYLAITGDAVLLKFEKAKSALIDSLRRVEDIVPSSIGSQILDIVG 121
Query: 124 DLREATFILDSSDEEAGKVLRELLQEDVSAIDSLEFSEIKALQLAASRLCITSPKAILIE 183
+L F+LD S++E G + LLQ+ + + +E++ AA+RL ITS ++ L E
Sbjct: 122 ELEHTKFLLDPSEKEVGDRIIALLQQGKKFDNGSDSTELEIFHQAATRLSITSSRSALAE 181
Query: 184 KRSIKKLLDKVG-DSDQSKIKVLKYLFYLLKKYGN---SVLGEQKDNACAQEEGSYTVCS 239
+R++KK++D+ + D+ K ++ YL +L++KY S + ++ D+ C+ T CS
Sbjct: 182 RRALKKVIDRARVEEDKRKESIVAYLLHLMRKYSKLFRSEMMDENDSPCS------TPCS 235
Query: 240 QSFEVDSRVGDRKFGAQTNNLSR--------------AIIPEVFKCPLSLRLMYDPVVIE 285
+ + + FG Q + I PE +CP+SL+LMYDPV+I
Sbjct: 236 PTGQGPNEDRVNAFGRQLSKFGSINYKPMNSRKSGQMPIPPEELRCPISLQLMYDPVIIA 295
Query: 286 SGQTFERMWIQKWFEEGNHTCPKTKMKLVCQSLTPNTAMKDLISKWCMNLCSSMNDLHVP 345
SGQT+ER+ I+KWF +G+++CPKT+ +L SLTPN +K LI+ WC N + VP
Sbjct: 296 SGQTYERVCIEKWFSDGHNSCPKTQQQLPHLSLTPNYCVKGLIASWC-----EQNGITVP 350
Query: 346 ------LDISNMSLGSLDT---------SYG---------------SDTSSNKIADGSNR 375
LD++ L D+ S G S S + N
Sbjct: 351 TGPPESLDLNYWRLAMSDSESPNSKSVDSVGLCTPKDIRVVPLEESSTIESERQQKEKNN 410
Query: 376 TP--------LWTNVHDIDLSRLTELNWDCQCKVIEDYETRLEHDNQVSHSLSSTNFVEP 427
P + DI E + +CKV+E+ L+ + + + + FVE
Sbjct: 411 APDEVDSEINVLEGYQDILAIVDKEEDLAKKCKVVENVRILLKDNEEARILMGANGFVEA 470
Query: 428 LIRFLRDARDLHDSRAQRIGCRLLLAF-VSKNRSGIPYLNEDLFSLLASFLHSAAATEET 486
++FL A +++ AQ G L V+ NR+ L + LL + + +
Sbjct: 471 FLQFLESAVHDNNAAAQETGAMALFNLAVNNNRNKELMLTSGVIPLLEKMISCSQSQGPA 530
Query: 487 LAILVALSSYAYFISKIVASGALASILNMLDSPNGKFQEL-AIKILHNLSSDVDIQSHIA 545
A+ + LS I +S A++ +N+L +L A+ L+NLS+ S
Sbjct: 531 TALYLNLSCLEKAKPVIGSSQAVSFFVNLLLQDTKTQCKLDALHALYNLST----YSPNI 586
Query: 546 PSEFLPKLVPFLKDATLAVS--------CLVILKNMCNTEHARVCVVETSGCLPSVAELL 597
P+ ++ L+ LA + L +L N+ ++ + ++ T G + ++A +L
Sbjct: 587 PTLLSSNIIKSLQ--VLASTGNHLWIEKSLAVLLNLASSREGKEEMITTQGMISTLATVL 644
Query: 598 EIGSEEDQEHAVAILLCLCSQRDQYCKLVMNEGVIPSLVKISVYGNDKAKVSALELRRLL 657
+ G +QE AV+ L+ LC+ + ++V+ EGVIPSLV ISV G+ + + + +L L
Sbjct: 645 DTGDTVEQEQAVSCLVILCTGSESCIQMVLQEGVIPSLVSISVNGSPRGRDKSQKLLMLF 704
Query: 658 RD 659
R+
Sbjct: 705 RE 706
|
Functions as an E3 ubiquitin ligase. Arabidopsis thaliana (taxid: 3702) EC: 6 EC: . EC: 3 EC: . EC: 2 EC: . EC: - |
| >sp|Q9C7G1|PUB45_ARATH U-box domain-containing protein 45 OS=Arabidopsis thaliana GN=PUB45 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 284 bits (726), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 226/732 (30%), Positives = 361/732 (49%), Gaps = 103/732 (14%)
Query: 4 DESEIVEIWSSPTSFKVHHGMCTQLSKFVERIAKVFPEIEAARPRCSSGVQALCLLNNAI 63
D +E+ E + +P K+H MC LS +I +FP +EAARPR SG+QALC L+ +
Sbjct: 2 DVNEVEENFFAPGDAKLHGKMCNALSVIYCKIMSIFPSLEAARPRSKSGIQALCSLHVVL 61
Query: 64 GKAKSLLQYCSESSKLYLAITGGVIVSRCMRSTNMMEQSLSQIESMVPVMLAVEISQIID 123
K K++L++C+ESSKLYLAITG +V + ++ + + SL ++E +V + ++ +I+
Sbjct: 62 EKVKNILRHCTESSKLYLAITGDSVVLKFEKAKSSLTDSLRRVEDIVQQSIGSQLLEILM 121
Query: 124 DLREATFILDSSDEEAGKVLRELLQEDVSAIDSLEFSEIKALQLAASRLCITSPKAILIE 183
+L F LD +++E G + LLQ+ + S + +E++ AA+RL ITS +A L E
Sbjct: 122 ELENTEFSLDPAEKEIGDQIIGLLQQGGNFESSSDNNELEVFHQAATRLGITSSRAALTE 181
Query: 184 KRSIKKLLDKVG-DSDQSKIKVLKYLFYLLKKYGNSVLGEQKDNACAQEEGSYTVCSQSF 242
+R +KKL+++ + D+ K ++ YL +L++KY E D+ +Q S CS +
Sbjct: 182 RRCLKKLIERARMEDDKRKESIVAYLLHLMRKYSKLFRSEIWDDNDSQGSSSLP-CSPTI 240
Query: 243 E--VDSRVGDRKFGAQTNNLSR---------------AIIPEVFKCPLSLRLMYDPVVIE 285
+ +D G R F Q + LS ++ PE +CP+SL+LMYDPV+I
Sbjct: 241 QGSIDDAHG-RAFDRQLSKLSSFNFRSCNNNRRSSQMSVPPEELRCPISLQLMYDPVIIA 299
Query: 286 SGQTFERMWIQKWFEEGNHTCPKTKMKLVCQSLTPNTAMKDLISKWCMNLCSSMNDLHVP 345
SGQT+ER+ I+KWF +G++TCPKT +L LTPN +K LIS WC N + VP
Sbjct: 300 SGQTYERICIEKWFSDGHNTCPKTHQQLSHLCLTPNYCVKALISSWC-----EQNGVQVP 354
Query: 346 ------LDISNMSLG-----SLDTSYGSDTSSNKIAD---------GSNR---------- 375
LD++ L S DT S K+ D G+ +
Sbjct: 355 DGPPESLDLNYWRLALSVSESTDTRSAKRVGSCKLKDVKVVPLEESGTIKEEACESEYQE 414
Query: 376 ---------TPLWTNVHDIDLSRLTELNWDCQCKVIEDYETRLEHDNQVSHSLSSTNFVE 426
T L T + D+D R +C+V+E L+ D + + VE
Sbjct: 415 DQVTLVERCTELLTTLTDVDTLRK-------KCRVVEQIRVLLKDDEEARILMGENGCVE 467
Query: 427 PLIRFLRDARDLHDSRAQRIGCRLLLAF-VSKNRSGIPYLNEDLFSLLASFLHSAAATEE 485
L++FL A + +++ AQ++G L V NR+ L + LL L + +
Sbjct: 468 ALLQFLGSALNENNASAQKVGAMALFNLAVDNNRNKELMLASGIIPLLEEMLCNPHSHGS 527
Query: 486 TLAILVALSSYAYFISKIVASGALASILNMLDSPNGKFQELAIKI--LHNLSSDVDIQSH 543
AI + LS I +S A+ ++N+L + E+ K+ LH+L H
Sbjct: 528 VTAIYLNLSCLEEAKPVIGSSLAVPFMVNLLWTET----EVQCKVDALHSL-------FH 576
Query: 544 IAPSEFLPKLVPFLKDATL--AVSCLVILKNMCNTEHARVC-------------VVETSG 588
++ P +P L A L A+ L I TE + +V
Sbjct: 577 LST---YPPNIPCLLSADLVNALQSLTISDEQRWTEKSLAVLLNLVLNEAGKDEMVSAPS 633
Query: 589 CLPSVAELLEIGSEEDQEHAVAILLCLCSQRDQYCKLVMNEGVIPSLVKISVYGNDKAKV 648
+ ++ +L+ G +QE AV++LL LC+ + ++V+ EGVIPSLV ISV G + +
Sbjct: 634 LVSNLCTILDTGEPNEQEQAVSLLLILCNHSEICSEMVLQEGVIPSLVSISVNGTQRGRE 693
Query: 649 SALELRRLLRDV 660
A +L L R++
Sbjct: 694 RAQKLLTLFREL 705
|
Functions as an E3 ubiquitin ligase. Arabidopsis thaliana (taxid: 3702) EC: 6 EC: . EC: 3 EC: . EC: 2 EC: . EC: - |
| >sp|Q9SNC6|PUB13_ARATH U-box domain-containing protein 13 OS=Arabidopsis thaliana GN=PUB13 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 166 bits (421), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 166/656 (25%), Positives = 300/656 (45%), Gaps = 65/656 (9%)
Query: 24 MCTQLSKFVERIAKVFPEI-EAARPRCSSGVQALCLLNNAIGKAKSLLQYCSESSKLYLA 82
+C L++ ++ + +F EI E+ P ++ L L A+ AK L++CS+ SK+YL
Sbjct: 32 LCYNLARRLKLLVPMFEEIRESNEPISEDTLKTLMNLKEAMCSAKDYLKFCSQGSKIYLV 91
Query: 83 ITGGVIVSRCMRSTNMMEQSLSQI---ESMVPVMLAVEISQIIDDLREATFILDSSDEEA 139
+ + S+ M + +EQSLSQI E + + ++ ++ R A +D SD+E
Sbjct: 92 MEREQVTSKLMEVSVKLEQSLSQIPYEELDISDEVREQVELVLSQFRRAKGRVDVSDDEL 151
Query: 140 GKVLRELLQEDVSAIDSLEFSEIKALQLAASRLCITSPKAILIEKRSIKKLLDKVGDSDQ 199
+ L+ L + S +D+ + L+ A +L + + E ++ +++ G
Sbjct: 152 YEDLQSLCNKS-SDVDAYQ----PVLERVAKKLHLMEIPDLAQESVALHEMVASSGGDVG 206
Query: 200 SKIKVLKYLFYLLKKYGNSVLGEQKDNACAQEEGSYTVCSQSFEVDSRVGDRKFGAQTNN 259
I+ + + ++K + + + DN Q+ G V+SR + A +
Sbjct: 207 ENIEEMAMVLKMIKDFVQT----EDDNGEEQKVG----------VNSRSNGQTSTAASQK 252
Query: 260 LSRAIIPEVFKCPLSLRLMYDPVVIESGQTFERMWIQKWFEEGNHTCPKTKMKLVCQSLT 319
+ +IP+ F+CP+SL +M DPV++ SGQT+ER I+KW E G+ TCPKT+ L +LT
Sbjct: 253 IP--VIPDDFRCPISLEMMRDPVIVSSGQTYERTCIEKWIEGGHSTCPKTQQALTSTTLT 310
Query: 320 PNTAMKDLISKWCMNLCSSMNDLHVPLDISNMSLGSLDTSYGSDTSSNKIADGSNRTPLW 379
PN ++ LI++WC ND+ P S++ + +S+ S +NKI D +W
Sbjct: 311 PNYVLRSLIAQWC-----EANDIEPPKPPSSLRPRKV-SSFSSPAEANKIED-----LMW 359
Query: 380 TNVHDIDLSRLTELNWDCQCKVIEDYE--TRLEHDNQVSHSLSSTNFVEPLIRFLRDARD 437
RL N + Q + + DN+V +++ + L+ L
Sbjct: 360 ---------RLAYGNPEDQRSAAGEIRLLAKRNADNRV--AIAEAGAIPLLVGLL----S 404
Query: 438 LHDSRAQR--IGCRLLLAFVSKNRSGIPYLNEDLFSLLASFLH--SAAATEETLAILVAL 493
DSR Q + L L+ N+ I ++ + L S A E A L +L
Sbjct: 405 TPDSRIQEHSVTALLNLSICENNKGAI--VSAGAIPGIVQVLKKGSMEARENAAATLFSL 462
Query: 494 SSYAYFISKIVASGALASILNMLDSPNGKFQELAIKILHNLSSDVDIQSHIAPSEFLPKL 553
S I A GA+ ++ +L+ + ++ A L NL + + +P L
Sbjct: 463 SVIDENKVTIGALGAIPPLVVLLNEGTQRGKKDAATALFNLCIYQGNKGKAIRAGVIPTL 522
Query: 554 VPFLKD--ATLAVSCLVILKNMCNTEHARVCVVETSGCLPSVAELLEIGSEEDQEHAVAI 611
L + + + L IL + + + ++ +S +PS+ E + GS ++E+A A+
Sbjct: 523 TRLLTEPGSGMVDEALAILAILSSHPEGK-AIIGSSDAVPSLVEFIRTGSPRNRENAAAV 581
Query: 612 LLCLCSQRDQYCKLVMNEGVIPSLVKISVYGNDKAKVSALELRRLLRDVAYSVEQQ 667
L+ LCS Q+ G++ L+ ++ G D+ K A + LL ++ EQQ
Sbjct: 582 LVHLCSGDPQHLVEAQKLGLMGPLIDLAGNGTDRGKRKAAQ---LLERISRLAEQQ 634
|
Functions as an E3 ubiquitin ligase. Arabidopsis thaliana (taxid: 3702) EC: 6 EC: . EC: 3 EC: . EC: 2 EC: . EC: - |
| >sp|Q9ZV31|PUB12_ARATH U-box domain-containing protein 12 OS=Arabidopsis thaliana GN=PUB12 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 127 bits (320), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 164/670 (24%), Positives = 298/670 (44%), Gaps = 81/670 (12%)
Query: 6 SEIVEIWSSPTSFKVHHGMCTQLSKFVERIAKVFPEIEAARPRCSSGVQALCLLNNAIGK 65
+EI I S T K H C LS+ + + + EI + S V AL + ++
Sbjct: 18 NEIASISDSVTPMKKH---CANLSRRLSLLLPMLEEIRDNQESSSEVVNALLSVKQSLLH 74
Query: 66 AKSLLQYCSESSKLYLAITGGVIVSRCMRSTNMMEQSLSQIESMVPVMLAVEISQIIDDL 125
AK LL + S SK+YL + ++ + + T+++EQ+LS ++ E +I D+L
Sbjct: 75 AKDLLSFVSHVSKIYLVLERDQVMVKFQKVTSLLEQALS--------IIPYENLEISDEL 126
Query: 126 REATFIL-----DSSDEEAGKVLRELLQEDVSAIDSLEFS--EIKALQLAASRLCITSPK 178
+E ++ S + G V + L +DV ++ S S E ++ A +L + +
Sbjct: 127 KEQVELVLVQLRRSLGKRGGDVYDDELYKDVLSLYSGRGSVMESDMVRRVAEKLQLMTIT 186
Query: 179 AILIEKRSIKKLL-----DKVGDSDQSKIKVLKYLFYLLKKYGNSVLGEQKDNACAQEEG 233
+ E ++ ++ D G+S + VLK + ++ Y ++ D+A + +
Sbjct: 187 DLTQESLALLDMVSSSGGDDPGESFEKMSMVLKKIKDFVQTYNPNL-----DDAPLRLKS 241
Query: 234 SYTVCSQSFEVDSRVGDRKFGAQTNNLSRAIIPEVFKCPLSLRLMYDPVVIESGQTFERM 293
S SR DR I PE F+CP+SL LM DPV++ SGQT+ER
Sbjct: 242 SLP--------KSRDDDRDM---------LIPPEEFRCPISLELMTDPVIVSSGQTYERE 284
Query: 294 WIQKWFEEGNHTCPKTKMKLVCQSLTPNTAMKDLISKWCMNLCSSMNDLHVPL--DISNM 351
I+KW E G+ TCPKT+ L +TPN ++ LI++WC + N + P +IS
Sbjct: 285 CIKKWLEGGHLTCPKTQETLTSDIMTPNYVLRSLIAQWCES-----NGIEPPKRPNISQP 339
Query: 352 SLGSLDTSYGSDTSSNKIADGSNRTPLWTNVHDIDLSRLTELNWDCQCKVIEDYETRLEH 411
S + +S D NKI + L +LT + + + +
Sbjct: 340 SSKASSSSSAPDDEHNKIEEL--------------LLKLTSQQPEDRRSAAGEIRLLAKQ 385
Query: 412 DNQVSHSLSSTNFVEPLIRFLRDARDLHDSRAQR--IGCRLLLAFVSKNRSGIPYLNEDL 469
+N +++++ + L+ L + +DSR Q + L L+ +N+ I Y + +
Sbjct: 386 NNHNRVAIAASGAIPLLVNLLTIS---NDSRTQEHAVTSILNLSICQENKGKIVYSSGAV 442
Query: 470 FSLLASFLH-SAAATEETLAILVALSSYAYFISKIVASGALASILNMLDSPNGKFQELAI 528
++ S A E A L +LS I A+GA+ ++ +L + + ++ A
Sbjct: 443 PGIVHVLQKGSMEARENAAATLFSLSVIDENKVTIGAAGAIPPLVTLLSEGSQRGKKDAA 502
Query: 529 KILHNLSSDVDIQSHIAPSEFLPKLVPFLKD-----ATLAVSCLVILKNMCNTEHARVCV 583
L NL + + +P L+ L + ++S L IL + + +
Sbjct: 503 TALFNLCIFQGNKGKAVRAGLVPVLMRLLTEPESGMVDESLSILAILSSHPDGKSE---- 558
Query: 584 VETSGCLPSVAELLEIGSEEDQEHAVAILLCLCSQRDQYCKLVMNEGVIPSLVKISVYGN 643
V + +P + + + GS ++E++ A+L+ LCS Q+ G++ L++++ G
Sbjct: 559 VGAADAVPVLVDFIRSGSPRNKENSAAVLVHLCSWNQQHLIEAQKLGIMDLLIEMAENGT 618
Query: 644 DKAKVSALEL 653
D+ K A +L
Sbjct: 619 DRGKRKAAQL 628
|
Functions as an E3 ubiquitin ligase. Arabidopsis thaliana (taxid: 3702) EC: 6 EC: . EC: 3 EC: . EC: 2 EC: . EC: - |
| >sp|Q9C9A6|PUB10_ARATH U-box domain-containing protein 10 OS=Arabidopsis thaliana GN=PUB10 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 125 bits (314), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 112/415 (26%), Positives = 193/415 (46%), Gaps = 44/415 (10%)
Query: 256 QTNNLSRAIIPEVFKCPLSLRLMYDPVVIESGQTFERMWIQKWFEEGNHTCPKTKMKLVC 315
+++NL+ IPE F CP+SL LM DP ++ +GQT+ER +IQ+W + GN +CPKT+ KL
Sbjct: 237 KSDNLT---IPEDFLCPISLELMKDPAIVSTGQTYERSFIQRWIDCGNLSCPKTQQKLEN 293
Query: 316 QSLTPNTAMKDLISKWCMNLCSSMNDLHVPLDISNMSLGSLDTSYGSDTSSNKIADGSNR 375
+LTPN ++ LIS+WC + +++ P G K +DGS R
Sbjct: 294 FTLTPNYVLRSLISQWC-----TKHNIEQP--------------GGYMNGRTKNSDGSFR 334
Query: 376 TPLWTNVHDI--DLSRLTELNWDCQCKVIEDYETRLEHDNQVSHS-------LSSTNFVE 426
D+ D+S + L + IED T + +S ++ +
Sbjct: 335 --------DLSGDMSAIRALVCKLSSQSIEDRRTAVSEIRSLSKRSTDNRILIAEAGAIP 386
Query: 427 PLIRFLRDARDLHDSRAQRIGCRLLLAFVSKNRSGIPYLNEDLFSLLASFLHSAAATEET 486
L++ L D +++ + C L L+ N+ I +L S A E
Sbjct: 387 VLVKLLTSDGD-TETQENAVTCILNLSIYEHNKELIMLAGAVTSIVLVLRAGSMEARENA 445
Query: 487 LAILVALSSYAYFISKIVASGALASILNMLDSPNGKFQELAIKILHNLSSDVDIQSHIAP 546
A L +LS I ASGA+ +++++L + + ++ A L NL +
Sbjct: 446 AATLFSLSLADENKIIIGASGAIMALVDLLQYGSVRGKKDAATALFNLCIYQGNKGRAVR 505
Query: 547 SEFLPKLVPFLKDAT---LAVSCLVILKNMCNTEHARVCVVETSGCLPSVAELLEIGSEE 603
+ + LV L D++ +A L IL + + + A+ ++ + +P + + L+
Sbjct: 506 AGIVKPLVKMLTDSSSERMADEALTILSVLASNQVAKTAILR-ANAIPPLIDCLQKDQPR 564
Query: 604 DQEHAVAILLCLCSQRDQYCKLVMNEGVIPSLVKISVYGNDKAKVSALELRRLLR 658
++E+A AILLCLC + + + G + L+++S G ++AK A L LLR
Sbjct: 565 NRENAAAILLCLCKRDTEKLISIGRLGAVVPLMELSRDGTERAKRKANSLLELLR 619
|
Functions as an E3 ubiquitin ligase. Arabidopsis thaliana (taxid: 3702) EC: 6 EC: . EC: 3 EC: . EC: 2 EC: . EC: - |
| >sp|Q5VRH9|PUB12_ORYSJ U-box domain-containing protein 12 OS=Oryza sativa subsp. japonica GN=PUB12 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 122 bits (305), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 114/403 (28%), Positives = 179/403 (44%), Gaps = 40/403 (9%)
Query: 264 IIPEVFKCPLSLRLMYDPVVIESGQTFERMWIQKWFEEGNHTCPKTKMKLVCQSLTPNTA 323
IIP+ F+CP+SL LM DPV++ SGQT+ER IQKW + G+ TCPKT+ L SLTPN
Sbjct: 227 IIPDEFRCPISLELMQDPVIVSSGQTYERSCIQKWLDSGHKTCPKTQQPLSHTSLTPNFV 286
Query: 324 MKDLISKWCMNLCSSMNDLHVPLDISNMSLGSLDTSYGSDTSSNKIADGSNRTPLWTNVH 383
+K LIS+WC N + +P + N D + K +D + +
Sbjct: 287 LKSLISQWC-----EANGIELPKNKQN----------SRDKKAAKSSD-------YDHAG 324
Query: 384 DIDL-SRLTELNWDCQCKVIEDYETRLEHDNQVSHS--LSSTNFVEPLIRFLRDARDLHD 440
+ L +RL N D Q E RL V++ ++ + L+ L + D
Sbjct: 325 LVSLMNRLRSGNQDEQRAAA--GEIRLLAKRNVNNRICIAEAGAIPLLVNLLSSS----D 378
Query: 441 SRAQRIGCRLLLAFVSKNRSGIPYLNEDLFSLLASFLHSAA--ATEETLAILVALSSYAY 498
R Q LL + ++ + L + + E A L +LS
Sbjct: 379 PRTQEHAVTALLNLSIHENNKASIVDSHAIPKIVEVLKTGSMETRENAAATLFSLSVVDE 438
Query: 499 FISKIVASGALASILNML--DSPNGKFQELAIKILHNLSSDVDIQSHIAPSEFLPKLVPF 556
I A+GA+ ++N+L SP GK A + NL + + + L+ F
Sbjct: 439 NKVTIGAAGAIPPLINLLCDGSPRGKKD--AATAIFNLCIYQGNKVRAVKAGIVIHLMNF 496
Query: 557 LKDATLAV--SCLVILKNMCNTEHARVCVVETSGCLPSVAELLEIGSEEDQEHAVAILLC 614
L D T + L +L + ++ V+ S +P + E+++ GS ++E+A AIL
Sbjct: 497 LVDPTGGMIDEALSLLSILAGNPEGKI-VIARSEPIPPLVEVIKTGSPRNRENAAAILWL 555
Query: 615 LCSQRDQYCKLVMNEGVIPSLVKISVYGNDKAKVSALELRRLL 657
LCS + GV +L ++S G D+AK A + L+
Sbjct: 556 LCSADTEQTLAAKAAGVEDALKELSETGTDRAKRKASSILELM 598
|
Possesses E3 ubiquitin-protein ligase in vitro. Oryza sativa subsp. japonica (taxid: 39947) EC: 6 EC: . EC: 3 EC: . EC: 2 EC: . EC: - |
| >sp|Q8VZ40|PUB14_ARATH U-box domain-containing protein 14 OS=Arabidopsis thaliana GN=PUB14 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 108 bits (269), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 112/405 (27%), Positives = 185/405 (45%), Gaps = 40/405 (9%)
Query: 264 IIPEVFKCPLSLRLMYDPVVIESGQTFERMWIQKWFEEGNHTCPKTKMKLVCQSLTPNTA 323
+IPE F+CP+SL LM DPV++ +GQT+ER IQKW + G+ TCPK++ L+ LTPN
Sbjct: 247 VIPEYFRCPISLELMKDPVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLHAGLTPNYV 306
Query: 324 MKDLISKWCMNLCSSMNDLHVPLDISNMSLGSLDTS-YGSDTSSNKIADGSNRTPLWTNV 382
+K LI+ WC + N + +P + GS T+ G +SS+ +RT +
Sbjct: 307 LKSLIALWCES-----NGIELP-----QNQGSCRTTKIGGSSSSD-----CDRTFV---- 347
Query: 383 HDIDLSRLTEL-NWDCQCKVIEDYETRLEHDNQVSHS--LSSTNFVEPLIRFLRDARDLH 439
LS L +L N + + E RL V + ++ + L+ L
Sbjct: 348 ----LSLLEKLANGTTEQQRAAAGELRLLAKRNVDNRVCIAEAGAIPLLVELLSSP---- 399
Query: 440 DSRAQR--IGCRLLLAFVSKNRSGIPYLNE--DLFSLLASFLHSAAATEETLAILVALSS 495
D R Q + L L+ N+ I D+ +L + S A E A L +LS
Sbjct: 400 DPRTQEHSVTALLNLSINEGNKGAIVDAGAITDIVEVLKN--GSMEARENAAATLFSLSV 457
Query: 496 YAYFISKIVASGALASILNMLDSPNGKFQELAIKILHNLSSDVDIQSHIAPSEFLPKLVP 555
I A+GA+ +++++L+ + ++ A + NL +S + L
Sbjct: 458 IDENKVAIGAAGAIQALISLLEEGTRRGKKDAATAIFNLCIYQGNKSRAVKGGIVDPLTR 517
Query: 556 FLKDA--TLAVSCLVILKNMCNTEHARVCVVETSGCLPSVAELLEIGSEEDQEHAVAILL 613
LKDA + L IL + + + + E +P + E++ GS ++E+A AIL
Sbjct: 518 LLKDAGGGMVDEALAILAILSTNQEGKTAIAEAE-SIPVLVEIIRTGSPRNRENAAAILW 576
Query: 614 CLCSQRDQYCKLVMNEGVIPSLVKISVYGNDKAKVSALELRRLLR 658
LC + + G +L +++ G D+AK A L L++
Sbjct: 577 YLCIGNIERLNVAREVGADVALKELTENGTDRAKRKAASLLELIQ 621
|
Functions as an E3 ubiquitin ligase with specific E2 ubiquitin-conjugating enzymes. Undergoes auto-ubiquitination. Arabidopsis thaliana (taxid: 3702) EC: 6 EC: . EC: 3 EC: . EC: 2 EC: . EC: - |
| >sp|Q9C7R6|PUB17_ARATH U-box domain-containing protein 17 OS=Arabidopsis thaliana GN=PUB17 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 99.4 bits (246), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 148/620 (23%), Positives = 259/620 (41%), Gaps = 75/620 (12%)
Query: 65 KAKSLLQYCSESSKLYLAITGGVIVSRCMRSTNMMEQSLSQIESMVPV---MLAVEISQI 121
++K L+ YC++SSKL+L + I + + Q +S + ++PV L+ +I +
Sbjct: 116 RSKILVDYCAQSSKLWLLLQNPSISGYF----HDLNQEISTLLDVLPVNDLGLSDDIREQ 171
Query: 122 IDDL----REATFILDSSDEEAGKVLRELLQEDVSAIDSLEFSEIKA----LQLAASRLC 173
I+ L R+A +D +DE LRE S +D E +I + +L
Sbjct: 172 IELLQRQSRKARLYIDKNDES----LRESF---YSFLDGFENGKIPSSVDLRMFFVEKLG 224
Query: 174 ITSPKAILIEKRSIKKL-------LDKVGDSDQSKIKVLKYLFYLLKKYGNSVLGEQKDN 226
I K+ E +++ L+ G + + +Y +LL +
Sbjct: 225 IRDSKSCRSEIEFLEEQIVNHDGDLEPTGSVINGFVAITRYCRFLLFGF----------- 273
Query: 227 ACAQEEGSYTVCSQSFEVDSRVGDRKFGAQTNNLSRAIIPEVFKCPLSLRLMYDPVVIES 286
+E+G E + + + F AQ + +P+ F CP+SL LM DPV+I +
Sbjct: 274 ---EEDG----MEWWIENNPKKPRKGFVAQEIGDTFITVPKDFVCPISLDLMTDPVIIST 326
Query: 287 GQTFERMWIQKWFEEGNHTCPKTKMKLVCQSLTPNTAMKDLISKWCMNLCSSMNDLHVPL 346
GQT++R I +W EEG+ TCPKT L+ + PN A+K+LI +WC S ++
Sbjct: 327 GQTYDRNSIARWIEEGHCTCPKTGQMLMDSRIVPNRALKNLIVQWCT--ASGISYESEFT 384
Query: 347 DISNMSLGSLDTSYGSDTSSNKIADGSNRTPLWTNVHDIDLSRLTELNWDCQCKVIEDYE 406
D N S S K A +N+ + I + L + + Q +
Sbjct: 385 DSPNESFAS--------ALPTKAAVEANKATV-----SILIKYLADGSQAAQTVAAREIR 431
Query: 407 TRLEHDNQVSHSLSSTNFVEPLIRFLRDARDLHDSRAQRIGCRLLLAFVSKNRSGIPYLN 466
+ + ++ + L R L + ++ + L L+ KN+S I
Sbjct: 432 LLAKTGKENRAYIAEAGAIPHLCRLLTSENAI--AQENSVTAMLNLSIYEKNKSRIMEEG 489
Query: 467 ---EDLFSLLASFLHSAAATEETLAILVALSSYAYFISKIVASGALASILNML---DSPN 520
E + S+L S L + A E A L +LS+ + +I L +L +P
Sbjct: 490 DCLESIVSVLVSGL-TVEAQENAAATLFSLSAVHEYKKRIAIVDQCVEALALLLQNGTPR 548
Query: 521 GKFQELAIKILHNLSSDVDIQSHIAPSEFLPKLVPFLKDATLAVSCLVILKNMCNTEHAR 580
GK + A+ L+NLS+ D S + + LV LK+ +A L +
Sbjct: 549 GK--KDAVTALYNLSTHPDNCSRMIEGGGVSSLVGALKNEGVAEEAAGALALLVRQSLGA 606
Query: 581 VCVVETSGCLPSVAELLEIGSEEDQEHAVAILLCLC-SQRDQYCKLVMNEGVIPSLVKIS 639
+ + + + ++ G+ +E+AVA LL LC S + V+ I L++
Sbjct: 607 EAIGKEDSAVAGLMGMMRCGTPRGKENAVAALLELCRSGGAAVAEKVLRAPAIAGLLQTL 666
Query: 640 VY-GNDKAKVSALELRRLLR 658
++ G +A+ A L R+ +
Sbjct: 667 LFTGTKRARRKAASLARVFQ 686
|
Functions as an E3 ubiquitin ligase. Arabidopsis thaliana (taxid: 3702) EC: 6 EC: . EC: 3 EC: . EC: 2 EC: . EC: - |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 710 | ||||||
| 224134268 | 760 | predicted protein [Populus trichocarpa] | 0.974 | 0.910 | 0.575 | 0.0 | |
| 224094801 | 747 | predicted protein [Populus trichocarpa] | 0.964 | 0.917 | 0.560 | 0.0 | |
| 255561116 | 748 | ubiquitin-protein ligase, putative [Rici | 0.983 | 0.933 | 0.559 | 0.0 | |
| 14149112 | 756 | bg55 [Bruguiera gymnorhiza] | 0.976 | 0.916 | 0.549 | 0.0 | |
| 297735142 | 761 | unnamed protein product [Vitis vinifera] | 0.987 | 0.921 | 0.516 | 0.0 | |
| 359476890 | 902 | PREDICTED: U-box domain-containing prote | 0.987 | 0.777 | 0.507 | 0.0 | |
| 356495404 | 770 | PREDICTED: U-box domain-containing prote | 0.987 | 0.910 | 0.486 | 0.0 | |
| 356540765 | 761 | PREDICTED: U-box domain-containing prote | 0.985 | 0.919 | 0.481 | 1e-178 | |
| 357483491 | 767 | U-box domain-containing protein [Medicag | 0.970 | 0.898 | 0.460 | 1e-174 | |
| 356561227 | 758 | PREDICTED: U-box domain-containing prote | 0.964 | 0.903 | 0.468 | 1e-171 |
| >gi|224134268|ref|XP_002327797.1| predicted protein [Populus trichocarpa] gi|222836882|gb|EEE75275.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 795 bits (2052), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 426/740 (57%), Positives = 526/740 (71%), Gaps = 48/740 (6%)
Query: 1 MGTDESEIVEIWSSPTSFKVHHGMCTQLSKFVERIAKVFPEIEAARPRCSSGVQALCLLN 60
MGTD +E+VE P SFKVHH MCT+L K V++++K F EIEAARPRCSSG+QALCLLN
Sbjct: 1 MGTDAAEVVETLPFPYSFKVHHSMCTELMKLVDKVSKTFLEIEAARPRCSSGIQALCLLN 60
Query: 61 NAIGKAKSLLQYCSESSKLYLAITGGVIVSRCMRSTNMMEQSLSQIESMVPVMLAVEISQ 120
A+ KA+ LQYC +SSKLYLAITG IVS+C RS N++EQ+L+Q+++MVP+MLA EISQ
Sbjct: 61 KALEKARQHLQYCCDSSKLYLAITGDAIVSKCQRSRNLLEQTLAQMQTMVPIMLAAEISQ 120
Query: 121 IIDDLREATFILDSSDEEAGKVLRELLQEDVSAIDSLEFSEIKALQLAASRLCITSPKAI 180
IIDDLR A F+ DSS EEAGK +RELLQ+ S+ SEIK++QLAASRL ITS KAI
Sbjct: 121 IIDDLRAAMFMPDSSVEEAGKAMRELLQQGNLGSQSMVNSEIKSIQLAASRLHITSRKAI 180
Query: 181 LIEKRSIKKLLDKVGDSDQSKIKVLKYLFYLLKKYGNSVLGEQKDNACAQEEGSYTVCS- 239
LIEKRSIKK L+K G + K +L YL +LLKKYGN ++ EQ + AQ EG +++ +
Sbjct: 181 LIEKRSIKKQLEKDGGNKPGKRSILNYLMFLLKKYGNLLIEEQTETPKAQHEGLFSLKNP 240
Query: 240 -------QSFEVDSRVGDRKFGAQTNNLSRAIIPEVFKCPLSLRLMYDPVVIESGQTFER 292
Q +V+S VG ++ QT+ SRA PE FKCP+S+R+MYDPVVI SGQTFER
Sbjct: 241 SDSSFHRQYNQVESCVGCEQYETQTDMFSRATPPEDFKCPISMRVMYDPVVIASGQTFER 300
Query: 293 MWIQKWFEEGNHTCPKTKMKLVCQSLTPNTAMKDLISKWCM------------------- 333
MWIQKWF+EGN TCPKTK+KL +L PNT +KDLISKWC+
Sbjct: 301 MWIQKWFDEGNDTCPKTKVKLAHCALIPNTTIKDLISKWCVKYGITIHDPSIRALRLLDI 360
Query: 334 ------NLCSSMNDLHVPLDISNMSLGSLDTSYGSDTSSNKIADGSNRTPL--------- 378
+L SSMNDL++PLDISN+SLGSLD SY SD S +K+A+GSN +
Sbjct: 361 SINSIASLSSSMNDLNLPLDISNISLGSLDASYSSDASRSKVANGSNLILVQDNDYSCEC 420
Query: 379 --WTNVHDID---LSRLTELNWDCQCKVIEDYETRLEHDNQVSHSLSSTNFVEPLIRFLR 433
+TN++ D LS L EL WD QC ++ED + L+ ++QV SLSS NFVEPL RFLR
Sbjct: 421 HSYTNMNQQDLKFLSGLAELPWDSQCNMVEDVKGCLQCNDQVCPSLSSENFVEPLFRFLR 480
Query: 434 DARDLHDSRAQRIGCRLLLAFVSKNRSGIPYLNEDLFSLLASFLHSAAATEETLAILVAL 493
DAR+ D AQR+G LLL+FVSKNRSGI YL+E+ F+LL+SFL S EE LAI L
Sbjct: 481 DAREQQDIGAQRVGFHLLLSFVSKNRSGISYLHEEAFNLLSSFLDS-EVIEEVLAIFEVL 539
Query: 494 SSYAYFISKIVASGALASILNMLDSPNGKFQELAIKILHNLSSDVDIQSHIAPSEFLPKL 553
S Y Y SKI A GAL SI MLDS N +FQELAIKILHNLSS+ DI S IA E + KL
Sbjct: 540 SGYPYCRSKITACGALVSIRKMLDSLNKEFQELAIKILHNLSSNDDICSQIASMECISKL 599
Query: 554 VPFLKDATLAVSCLVILKNMCNTEHARVCVVETSGCLPSVAELLEIGSEEDQEHAVAILL 613
VP +KD L+ +V+L+N+C+ E ARV V ET+GC+ S+AELLE GS E+QEHAVAILL
Sbjct: 600 VPLMKDGNLSRYSIVLLRNLCDLEVARVSVAETNGCIASIAELLESGSREEQEHAVAILL 659
Query: 614 CLCSQRDQYCKLVMNEGVIPSLVKISVYGNDKAKVSALELRRLLRDVAYSVEQQCFGSEI 673
LCSQR QYC+LVM+EGVIPSLV IS+ G DK + SALEL R LRD+ Y +Q+ F S++
Sbjct: 660 LLCSQRLQYCQLVMDEGVIPSLVDISINGTDKGRASALELLRQLRDIEYDNDQESFCSDL 719
Query: 674 DTSKDASSDPRKEKPSSKTS 693
T +DA R++K S KTS
Sbjct: 720 VTDRDADHQTREKKSSPKTS 739
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224094801|ref|XP_002310241.1| predicted protein [Populus trichocarpa] gi|222853144|gb|EEE90691.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 759 bits (1961), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 409/730 (56%), Positives = 512/730 (70%), Gaps = 45/730 (6%)
Query: 1 MGTDESEIVEIWSSPTSFKVHHGMCTQLSKFVERIAKVFPEIEAARPRCSSGVQALCLLN 60
MGTD +E VE P SFKVHH MCT+L K V++++K+FP+IEAARP CS G+QALC LN
Sbjct: 1 MGTDAAEAVETLPCPYSFKVHHSMCTELLKLVDKVSKIFPKIEAARPCCSLGIQALCSLN 60
Query: 61 NAIGKAKSLLQYCSESSKLYLAITGGVIVSRCMRSTNMMEQSLSQIESMVPVMLAVEISQ 120
NA+ KAK LQYC +SSKLYLAITG V+VSRC RS N+MEQSL QI++MVPV+LA EIS
Sbjct: 61 NALEKAKHHLQYCCDSSKLYLAITGDVVVSRCQRSRNLMEQSLGQIQTMVPVILAAEISH 120
Query: 121 IIDDLREATFILDSSDEEAGKVLRELLQEDVSAIDSLEFSEIKALQLAASRLCITSPKAI 180
++DDLR A F+L+SS+EEAGK +RELLQ+ + DS+ SEIKA+QLAASRL ITS KAI
Sbjct: 121 VVDDLRAAMFMLESSEEEAGKAIRELLQQSRES-DSVVNSEIKAIQLAASRLHITSRKAI 179
Query: 181 LIEKRSIKKLLDKVGDSDQSKIKVLKYLFYLLKKYGNSVLGEQKDNACAQEEGSY----- 235
LIEKRSIK LDKVG +D K +L YL LLKK+G+ ++ EQ + +Q EG +
Sbjct: 180 LIEKRSIKNQLDKVGGNDPRKKSILNYLMLLLKKHGDLLIEEQGETPKSQHEGFFSLKNP 239
Query: 236 --TVCSQSFEVDSRVGDRKFGAQTNNLSRAIIPEVFKCPLSLRLMYDPVVIESGQTFERM 293
T + + + +G K QT SRA PE FKCP+S+R+MYDPVVI SGQTFE+M
Sbjct: 240 NDTFLHRQYNQVAGIGCGKSETQTELFSRATPPEEFKCPISMRVMYDPVVIASGQTFEKM 299
Query: 294 WIQKWFEEGNHTCPKTKMKLVCQSLTPNTAMKDLISKWCM-------------------- 333
WIQKWF+EGN TCPKTK+KL ++LTPNT +KDLISKWC+
Sbjct: 300 WIQKWFDEGNDTCPKTKVKLTHRALTPNTCIKDLISKWCVKYGITIPDPCIQASKLLDIS 359
Query: 334 -----NLCSSMNDLHVPLDISNMSLGSLDTSYGSDTSSNKI-------ADGSNRTPLWTN 381
+L SSM+DLH+PLDISN+SLGS+D SY S+++ +K D S R + N
Sbjct: 360 VNSIASLGSSMSDLHLPLDISNISLGSIDGSYSSESAQSKSNLMPIQNNDDSYRHHSYVN 419
Query: 382 VHDID---LSRLTELNWDCQCKVIEDYETRLEHDNQVSHSLSSTNFVEPLIRFLRDARDL 438
++ D LS L EL W+ QCK++ED ++ L+ ++Q+ HSLSS NFVEPL RFLRDA D
Sbjct: 420 INQQDLKSLSGLAELPWESQCKMVEDVKSCLQCNDQLCHSLSSENFVEPLFRFLRDAHDQ 479
Query: 439 HDSRAQRIGCRLLLAFVSKNRSGIPYLNEDLFSLLASFLHSAAATEETLAILVALSSYAY 498
D AQR G +LLL+F SKNRSGI YL+ED++ LL+SF S EE LAI LS + Y
Sbjct: 480 QDIGAQRFGYQLLLSFASKNRSGISYLHEDVYVLLSSFPDS-EVIEEVLAIFEVLSGHPY 538
Query: 499 FISKIVASGALASILNMLDSPNGKFQELAIKILHNLSSDVDIQSHIAPSEFLPKLVPFLK 558
SKI ASGAL SI +LDS + +FQ+ AIKILHNLSS+ DI S I E +PKLVP LK
Sbjct: 539 CQSKITASGALVSIRRILDSHSTEFQKQAIKILHNLSSNNDICSQIVLMECIPKLVPLLK 598
Query: 559 DATLAVSCLVILKNMCNTEHARVCVVETSGCLPSVAELLEIGSEEDQEHAVAILLCLCSQ 618
+ L+ +V+L+N+C+ E ARV V ET+GC+ S+AELLE GS E+QEHA AILL LCSQ
Sbjct: 599 NGNLSSYSVVLLRNLCDIEEARVSVAETNGCIASIAELLESGSREEQEHAAAILLSLCSQ 658
Query: 619 RDQYCKLVMNEGVIPSLVKISVYGNDKAKVSALELRRLLRDVA-YSVEQQCFGSEIDTSK 677
R YC+LVM EGVIPSLV IS+ G DK + ALEL R LRD+ Y E +CF S+ID +
Sbjct: 659 RLHYCQLVMEEGVIPSLVDISINGTDKGRAIALELLRQLRDITEYDNEHECFVSDIDADR 718
Query: 678 DASSDPRKEK 687
DAS ++K
Sbjct: 719 DASHQTIEKK 728
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255561116|ref|XP_002521570.1| ubiquitin-protein ligase, putative [Ricinus communis] gi|223539248|gb|EEF40841.1| ubiquitin-protein ligase, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 746 bits (1926), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 421/752 (55%), Positives = 521/752 (69%), Gaps = 54/752 (7%)
Query: 1 MGTDESEIVEIWSSPTSFKVHHGMCTQLSKFVERIAKVFPEIEAARPRCSSGVQALCLLN 60
MGTD E + + +FKVHH MC +L K V+RI KVFPE+EAARPRCSSG+Q+LCLLN
Sbjct: 1 MGTDAVETLPYY---YTFKVHHSMCMELMKLVDRIEKVFPEVEAARPRCSSGIQSLCLLN 57
Query: 61 NAIGKAKSLLQYCSESSKLYLAITGGVIVSRCMRSTNMMEQSLSQIESMVPVMLAVEISQ 120
I KA+ +L +C ESSKLYL ITG VIVSRC RS EQSL QI++MVP ML+ EISQ
Sbjct: 58 GTIEKARQILWHCCESSKLYLVITGDVIVSRCQRSRKYFEQSLGQIQAMVPTMLSAEISQ 117
Query: 121 IIDDLREATFILDSSDEEAGKVLRELLQEDVSAIDSLEFSEIKALQLAASRLCITSPKAI 180
IIDDL ATF LDS DE AG+ +REL+Q+ SA DS++ SEIKAL++AASRL ITSPKAI
Sbjct: 118 IIDDLNAATFTLDSCDEVAGRAVRELIQQGTSASDSVDGSEIKALRIAASRLHITSPKAI 177
Query: 181 LIEKRSIKKLLDKVGDSDQSKIKVLKYLFYLLKKYGNSVLGEQKDNACAQEEGSY----- 235
LIEKRSIKKLLDKVGD+D +K K+L+YL YLLKKYGN ++ EQ +N Q EGS
Sbjct: 178 LIEKRSIKKLLDKVGDNDPTKRKILRYLLYLLKKYGNLIMEEQIENPKPQHEGSVALMDS 237
Query: 236 ---TVCSQSFEVDSRVGDRKFGAQTNNLSRAIIPEVFKCPLSLRLMYDPVVIESGQTFER 292
+V + S ++ +G ++ G T+ L+ PE FKCP+S+R+MYDPVVI SG+TFER
Sbjct: 238 TSTSVNNPSVAIEFELGLKQSGVATDILTGCTPPEEFKCPISMRVMYDPVVIASGETFER 297
Query: 293 MWIQKWFEEGNHTCPKTKMKLVCQSLTPNTAMKDLISKWC-------------------- 332
MWI+KWF +GN TCPKTK+KL LTPNTAMKDLISKWC
Sbjct: 298 MWIRKWFNDGNITCPKTKVKLPHHLLTPNTAMKDLISKWCERYRITISDPSIQEYHTLDI 357
Query: 333 -----MNLCSSMNDLHVPLDISNMSLGSLDTSYGSDTSSNKIADGS-----------NRT 376
+L +SMND+H+PLDISNMSLGSLD SY SD S NK+ADGS +R
Sbjct: 358 SSTSIASLGNSMNDIHLPLDISNMSLGSLDASYSSD-SRNKVADGSSLMLIRETDDCHRF 416
Query: 377 PLWTNVHDID---LSRLTELNWDCQCKVIEDYETRLEHDNQVSHSLSSTNFVEPLIRFLR 433
VH+ D L+RL+EL WD Q K++E + L++++Q HSLS NFV PLIR+LR
Sbjct: 417 QSNACVHETDSGNLTRLSELQWDSQSKMVEYVKKYLQYNDQAYHSLSFENFVGPLIRYLR 476
Query: 434 DARDLHDSRAQRIGCRLLLAFVSKNRSGIPYLNEDLFSLLASFLHSAAATEETLAILVAL 493
DA D HD +AQ+ G LLLAFVSKNRSG+ YL+E+ FSLL SFL S EE LAIL L
Sbjct: 477 DAHDQHDVKAQKAGSELLLAFVSKNRSGMAYLHEEAFSLLVSFLDS-EVVEEALAILEVL 535
Query: 494 SSYAYFISKIVASGALASILNMLDSPNGKFQELAIKILHNLSSDVDIQSHIAPSEFLPKL 553
SS+ Y SKI SGAL IL +L+ FQE AIKILHNLSS+ D+ S I E +PKL
Sbjct: 536 SSHPYCRSKITESGALVPILKILEQIK-DFQEKAIKILHNLSSNSDVCSQIVYLECIPKL 594
Query: 554 VPFLKDATLAVSCLVILKNMCNTEHARVCVVETSGCLPSVAELLEIGSEEDQEHAVAILL 613
VPF+ D + A +V+L+N+C+ E AR+ V ET+GC+ S++ELLE GS E+QEHAV ILL
Sbjct: 595 VPFINDGSTAKYSIVLLRNLCDIEEARISVAETNGCIASISELLESGSREEQEHAVVILL 654
Query: 614 CLCSQRDQYCKLVMNEGVIPSLVKISVYGNDKAKVSALELRRLLRDVAYSVEQQCFGSEI 673
LCSQR QYCKLVM+EGVIPSLV IS+ GN+K K ALEL R LRD+ +Q+ ++
Sbjct: 655 SLCSQRVQYCKLVMDEGVIPSLVDISINGNEKGKAIALELLRQLRDIEVGEKQEPAVPDL 714
Query: 674 DTSKDASSDPRKEKPSSKTSRIFGWKFPKLSK 705
S+ A+ +++K S KTS +KF SK
Sbjct: 715 GGSRGANQQCKEKKSSHKTSGGI-FKFSLFSK 745
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|14149112|dbj|BAB55653.1| bg55 [Bruguiera gymnorhiza] | Back alignment and taxonomy information |
|---|
Score = 743 bits (1918), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 408/742 (54%), Positives = 516/742 (69%), Gaps = 49/742 (6%)
Query: 1 MGTDESEIVEIWSSPTSFKVHHGMCTQLSKFVERIAKVFPEIEAARPRCSSGVQALCLLN 60
MGTD E+VE S KVH +C +L K V+RI ++FP IEA+RPRC G++ LCLLN
Sbjct: 1 MGTDAGEVVETLPHCYSCKVHQSICRELRKVVDRIERLFPNIEASRPRCRLGIEVLCLLN 60
Query: 61 NAIGKAKSLLQYCSESSKLYLAITGGVIVSRCMRSTNMMEQSLSQIESMVPVMLAVEISQ 120
+A+ +AK +LQYCSESSKLYLA+ G VIVSRC +S N++EQSL QI++MVPV+LA EISQ
Sbjct: 61 DALDRAKQVLQYCSESSKLYLALNGDVIVSRCQKSRNLLEQSLDQIQTMVPVILAAEISQ 120
Query: 121 IIDDLREATFILDSSDEEAGKVLRELLQEDVSAIDSLEFSEIKALQLAASRLCITSPKAI 180
+IDDLR A F+LD SDEEAGK +RELLQ+ S D++E SEIK L+ AASRLCIT+PK +
Sbjct: 121 VIDDLRVAKFVLDHSDEEAGKAVRELLQQHTSMSDAVE-SEIKVLRFAASRLCITTPKDL 179
Query: 181 LIEKRSIKKLLDKVGDSDQSKIKVLKYLFYLLKKYGNSVLGEQKDNACAQEEGSY----T 236
LIEKRSIKKL++KV D+D +K K+L YL +LLKKYGNS+LGEQ +N +Q+E + +
Sbjct: 180 LIEKRSIKKLVNKVRDNDPTKKKILIYLLHLLKKYGNSILGEQGENLNSQQEELFADGSS 239
Query: 237 VCSQSFEVDSRVGDRKF--GAQTNNLSRAIIPEVFKCPLSLRLMYDPVVIESGQTFERMW 294
V SQ+ EV ++ A+ +N+ A PE +KCPLS RLMYDPVVI SGQTFER+W
Sbjct: 240 VSSQAAEVGPCTACKQIVAEAEMSNIPPAP-PEEYKCPLSKRLMYDPVVIASGQTFERIW 298
Query: 295 IQKWFEEGNHTCPKTKMKLVCQSLTPNTAMKDLISKWC---------------------- 332
IQKWF+EGN TCPKT +KL QSL PNTA+KDLISKWC
Sbjct: 299 IQKWFDEGNDTCPKTLVKLDHQSLMPNTALKDLISKWCEKYGVTILDPNSQAFQSLDTSS 358
Query: 333 ---MNLCSSMNDLHVPLDISNMSLGSLDTSYGSDTSSNKIADGSNRTPLW---------- 379
+ SMNDLH+PLDISN+SLGS D SY SD+ KIA+ SN +
Sbjct: 359 TSVASFGISMNDLHLPLDISNVSLGSSDASYCSDSPRTKIAERSNLMSMQRNNGYSAFQS 418
Query: 380 ---TNVHDID-LSRLTELNWDCQCKVIEDYETRLEHDNQVSHSLSSTNFVEPLIRFLRDA 435
TN +D LSRL +L W+ +C++IED ++ LE + Q H +S NFVEPLI+FLRDA
Sbjct: 419 RANTNKTCLDFLSRLAKLGWESKCEMIEDVKSHLEDNVQPFHHISFENFVEPLIKFLRDA 478
Query: 436 RDLHDSRAQRIGCRLLLAFVSKNRSGIPYLNEDLFSLLASFLHSAAATEETLAILVALSS 495
+ HD RAQR G +LLLAFVSK RSGI +L+ED F LLAS L S EE LAIL LSS
Sbjct: 479 KYQHDVRAQRAGSKLLLAFVSKKRSGISWLHEDTFDLLASMLDSEL-VEEALAILEVLSS 537
Query: 496 YAYFISKIVASGALASILNMLDSPNGKFQELAIKILHNLSSDVDIQSHIAPSEFLPKLVP 555
SKI ASGAL IL +LDS +FQE A++ILHNLSS+ ++ S I +PKLVP
Sbjct: 538 DKDSRSKITASGALVYILRILDSEREEFQEGAVRILHNLSSNNEVCSQILSLNCIPKLVP 597
Query: 556 FLKDATLAVSCLVILKNMCNTEHARVCVVETSGCLPSVAELLEIGSEEDQEHAVAILLCL 615
F+ LA C+ +LKN+C+ E ARV V ET+GC+ ++A+LLE S E+Q+HAVAILL L
Sbjct: 598 FINQGQLASHCMGLLKNLCDIEDARVSVAETNGCVAAIAKLLERESCEEQDHAVAILLSL 657
Query: 616 CSQRDQYCKLVMNEGVIPSLVKISVYGNDKAKVSALELRRLLRDVAYSVEQQCFGSEIDT 675
CSQR QYC LVM+EGVIPSL IS+ G++K K SALEL R LRDV + EQ+C G ++
Sbjct: 658 CSQRVQYCNLVMDEGVIPSLFVISINGSEKGKASALELLRQLRDVDFDNEQKCSGYDVGV 717
Query: 676 SKDASSDPRKEKPSSKTSRIFG 697
++D S +++K SS+ +R G
Sbjct: 718 TED-SHQCKEKKISSRKTRFLG 738
|
Source: Bruguiera gymnorhiza Species: Bruguiera gymnorhiza Genus: Bruguiera Family: Rhizophoraceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297735142|emb|CBI17504.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 674 bits (1738), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 391/757 (51%), Positives = 508/757 (67%), Gaps = 56/757 (7%)
Query: 1 MGTDESEIVEIWSSPTSFKVHHGMCTQLSKFVERIAKVFPEIEAARPRCSSGVQALCLLN 60
MGTD +E+V P + KVH MCT L V+R+ K+ PEIEAARP C +G ALC +N
Sbjct: 1 MGTDATEVVPTLPRPNAVKVHQLMCTDLMNLVDRVLKILPEIEAARP-CKAGRDALCSIN 59
Query: 61 NAIGKAKSLLQYCSESSKLYLAITGGVIVSRCMRSTNMMEQSLSQIESMVPVMLAVEISQ 120
AI KAKS+L CSESSKLYLAI+G VIV +C R +++E++LSQI++MVP ML +IS+
Sbjct: 60 LAIEKAKSVLLDCSESSKLYLAISGTVIVLKCERIRSLLEKNLSQIQTMVPCMLNAQISR 119
Query: 121 IIDDLREATFILDSSDEEAGKVLRELLQEDVSAIDSLEFSEIKALQLAASRLCITSPKAI 180
I++DLR TF LDSS+EEAGKV++ L++++ + D +E S+I+ALQ+AASRL ITS +
Sbjct: 120 IVEDLRAVTFSLDSSEEEAGKVMQTLMRQESAQSDLIENSKIEALQIAASRLHITSQRDQ 179
Query: 181 LIEKRSIKKLLDKVGDSDQSKIKVLKYLFYLLKKYGNSVLGEQKDNACAQEEGSY----- 235
LIEKRSI+K L+K ++++ K ++L YL LLKKYGN ++ Q +NA E +
Sbjct: 180 LIEKRSIRKQLEKSSNNER-KNQMLIYLLNLLKKYGNIIVEVQMENADDHHERPFPFPNS 238
Query: 236 ---TVCSQSFEVDSRVGDRKFGAQTNNLSRAIIPEVFKCPLSLRLMYDPVVIESGQTFER 292
++C QS EV S +G + AQT+ R I PE F CP+S RLMYDPV+I+SG TFER
Sbjct: 239 CGASLCGQSVEVGSCLGYGQHEAQTDVFRRPIPPEEFMCPISSRLMYDPVIIDSGVTFER 298
Query: 293 MWIQKWFEEGNHTCPKTKMKLVCQSLTPNTAMKDLISKWCM------------------- 333
MWIQKWF+EG+ TCP++K KL LTPNTAMK+LI KWCM
Sbjct: 299 MWIQKWFDEGHDTCPQSKKKLAKMLLTPNTAMKELILKWCMKHGIPEPGPCLEPPAFNTW 358
Query: 334 --------NLCSSMNDLHVPLDISNMSLGSLDTSYGSDTSSNKIADG-----------SN 374
+L +SMNDL++P+DIS +SLGSLD SY SD+S I DG S+
Sbjct: 359 EYSSTSITSLSNSMNDLNLPIDISGVSLGSLDNSYSSDSSHINIRDGLNLITVKTSDESH 418
Query: 375 RTPLWTNVHDIDLSRLTELN---WDCQCKVIEDYETRLEHDNQVSHSLSSTNFVEPLIRF 431
R + + DL L+EL W+ Q +V+ED E L+ D+Q HSLSS NFVEPLIRF
Sbjct: 419 RCHGHADKPETDLKFLSELATHPWESQYQVVEDVEKDLKGDDQAWHSLSSKNFVEPLIRF 478
Query: 432 LRDARDLHDSRAQRIGCRLLLAFVSKNRSGIPYLNEDLFSLLASFLHSAAATEETLAILV 491
L+DA + HD +AQR+G +LLLAFVSK+RSG+ YL ED F+L+ S L S TEE LAIL
Sbjct: 479 LKDACEQHDVKAQRVGSQLLLAFVSKSRSGVSYLGEDAFNLMTSLLDS-EVTEEALAILE 537
Query: 492 ALSSYAYFISKIVASGALASILNMLDSPNGKFQELAIKILHNLSSDVDIQSHIAPSEFLP 551
LSS SKI A+G L S+L +LD+ +FQE AIKIL+N+SS D++S I + +P
Sbjct: 538 VLSSNLNCGSKIAAAGTLTSVLKILDT-QREFQEPAIKILYNMSSKSDVRSFIVSLDCIP 596
Query: 552 KLVPFLKDATLAVSCLVILKNMCNTEHARVCVVETSGCLPSVAELLEIGSEEDQEHAVAI 611
KLVPFLKD LA C+VILKN+C TE RV V T GC+ S+ ELLE GS EDQEHA+AI
Sbjct: 597 KLVPFLKDTRLAKYCIVILKNLCYTEEGRVSVAGTDGCIASIVELLENGSCEDQEHAMAI 656
Query: 612 LLCLCSQRDQYCKLVMNEG--VIPSLVKISVYGNDKAKVSALELRRLLRDVAYSVEQQCF 669
LL LC+QR QYC+LVM EG V SL IS+ GND KV A EL RLLRD+ +S ++
Sbjct: 657 LLFLCAQRVQYCQLVMEEGADVFTSLASISLNGNDNGKVKANELLRLLRDIDHSDVKESP 716
Query: 670 GSEIDTSKDASSDPRKEKPSSKTSRIFGWKFPKLSKK 706
GS + D+S+ +++K SSK+S IFG + P SK+
Sbjct: 717 GSNLVVPVDSSNYLKEKKSSSKSSGIFG-RIPIFSKR 752
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359476890|ref|XP_002266200.2| PREDICTED: U-box domain-containing protein 5 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 664 bits (1712), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 392/773 (50%), Positives = 509/773 (65%), Gaps = 72/773 (9%)
Query: 1 MGTDESEIVEIWSSPTS----------------FKVHHGMCTQLSKFVERIAKVFPEIEA 44
MGTD +E+V P + FKVH MCT L V+R+ K+ PEIEA
Sbjct: 126 MGTDATEVVPTLPRPNAVKAYFKWHMVVWGCGRFKVHQLMCTDLMNLVDRVLKILPEIEA 185
Query: 45 ARPRCSSGVQALCLLNNAIGKAKSLLQYCSESSKLYLAITGGVIVSRCMRSTNMMEQSLS 104
ARP C +G ALC +N AI KAKS+L CSESSKLYLAI+G VIV +C R +++E++LS
Sbjct: 186 ARP-CKAGRDALCSINLAIEKAKSVLLDCSESSKLYLAISGTVIVLKCERIRSLLEKNLS 244
Query: 105 QIESMVPVMLAVEISQIIDDLREATFILDSSDEEAGKVLRELLQEDVSAIDSLEFSEIKA 164
QI++MVP ML +IS+I++DLR TF LDSS+EEAGKV++ L++++ + D +E S+I+A
Sbjct: 245 QIQTMVPCMLNAQISRIVEDLRAVTFSLDSSEEEAGKVMQTLMRQESAQSDLIENSKIEA 304
Query: 165 LQLAASRLCITSPKAILIEKRSIKKLLDKVGDSDQSKIKVLKYLFYLLKKYGNSVLGEQK 224
LQ+AASRL ITS + LIEKRSI+K L+K ++++ K ++L YL LLKKYGN ++ Q
Sbjct: 305 LQIAASRLHITSQRDQLIEKRSIRKQLEKSSNNER-KNQMLIYLLNLLKKYGNIIVEVQM 363
Query: 225 DNACAQEEGSY--------TVCSQSFEVDSRVGDRKFGAQTNNLSRAIIPEVFKCPLSLR 276
+NA E + ++C QS EV S +G + AQT+ R I PE F CP+S R
Sbjct: 364 ENADDHHERPFPFPNSCGASLCGQSVEVGSCLGYGQHEAQTDVFRRPIPPEEFMCPISSR 423
Query: 277 LMYDPVVIESGQTFERMWIQKWFEEGNHTCPKTKMKLVCQSLTPNTAMKDLISKWCM--- 333
LMYDPV+I+SG TFERMWIQKWF+EG+ TCP++K KL LTPNTAMK+LI KWCM
Sbjct: 424 LMYDPVIIDSGVTFERMWIQKWFDEGHDTCPQSKKKLAKMLLTPNTAMKELILKWCMKHG 483
Query: 334 ------------------------NLCSSMNDLHVPLDISNMSLGSLDTSYGSDTSSNKI 369
+L +SMNDL++P+DIS +SLGSLD SY SD+S I
Sbjct: 484 IPEPGPCLEPPAFNTWEYSSTSITSLSNSMNDLNLPIDISGVSLGSLDNSYSSDSSHINI 543
Query: 370 ADG-----------SNRTPLWTNVHDIDLSRLTELN---WDCQCKVIEDYETRLEHDNQV 415
DG S+R + + DL L+EL W+ Q +V+ED E L+ D+Q
Sbjct: 544 RDGLNLITVKTSDESHRCHGHADKPETDLKFLSELATHPWESQYQVVEDVEKDLKGDDQA 603
Query: 416 SHSLSSTNFVEPLIRFLRDARDLHDSRAQRIGCRLLLAFVSKNRSGIPYLNEDLFSLLAS 475
HSLSS NFVEPLIRFL+DA + HD +AQR+G +LLLAFVSK+RSG+ YL ED F+L+ S
Sbjct: 604 WHSLSSKNFVEPLIRFLKDACEQHDVKAQRVGSQLLLAFVSKSRSGVSYLGEDAFNLMTS 663
Query: 476 FLHSAAATEETLAILVALSSYAYFISKIVASGALASILNMLDSPNGKFQELAIKILHNLS 535
L S TEE LAIL LSS SKI A+G L S+L +LD+ +FQE AIKIL+N+S
Sbjct: 664 LLDS-EVTEEALAILEVLSSNLNCGSKIAAAGTLTSVLKILDTQR-EFQEPAIKILYNMS 721
Query: 536 SDVDIQSHIAPSEFLPKLVPFLKDATLAVSCLVILKNMCNTEHARVCVVETSGCLPSVAE 595
S D++S I + +PKLVPFLKD LA C+VILKN+C TE RV V T GC+ S+ E
Sbjct: 722 SKSDVRSFIVSLDCIPKLVPFLKDTRLAKYCIVILKNLCYTEEGRVSVAGTDGCIASIVE 781
Query: 596 LLEIGSEEDQEHAVAILLCLCSQRDQYCKLVMNEG--VIPSLVKISVYGNDKAKVSALEL 653
LLE GS EDQEHA+AILL LC+QR QYC+LVM EG V SL IS+ GND KV A EL
Sbjct: 782 LLENGSCEDQEHAMAILLFLCAQRVQYCQLVMEEGADVFTSLASISLNGNDNGKVKANEL 841
Query: 654 RRLLRDVAYSVEQQCFGSEIDTSKDASSDPRKEKPSSKTSRIFGWKFPKLSKK 706
RLLRD+ +S ++ GS + D+S+ +++K SSK+S IFG + P SK+
Sbjct: 842 LRLLRDIDHSDVKESPGSNLVVPVDSSNYLKEKKSSSKSSGIFG-RIPIFSKR 893
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356495404|ref|XP_003516568.1| PREDICTED: U-box domain-containing protein 5-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 660 bits (1703), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 370/760 (48%), Positives = 495/760 (65%), Gaps = 59/760 (7%)
Query: 1 MGTDESEIVEIWSSPTSFKVHHGMCTQLSKFVERIAKVFPEIEAARPRCSSGVQALCLLN 60
M TD E E+ +P SFKVH +CT+L+K V+RI+++ P+IEAARP SSG+++LCLLN
Sbjct: 9 MITDIGEGEEL-QNPRSFKVHSKICTELAKLVDRISRIVPDIEAARPGFSSGIESLCLLN 67
Query: 61 NAIGKAKSLLQYCSESSKLYLAITGGVIVSRCMRSTNMMEQSLSQIESMVPVMLAVEISQ 120
NAI KAK LL +CSE SKLYLA+TG ++SRC+++T +E+SL QI+ MVPVMLAVE+S+
Sbjct: 68 NAIDKAKLLLLHCSECSKLYLAVTGDTVLSRCLKATRSLEKSLIQIQDMVPVMLAVEVSR 127
Query: 121 IIDDLREATFILDSSDEEAGKVLRELLQEDVSAIDSLEFSEIKALQLAASRLCITSPKAI 180
II DL F+LD ++EEAG+ +RELL DS++ SE+KALQ AASRL ITSPKAI
Sbjct: 128 IIHDLECTRFVLDPNEEEAGRFVRELL---TLTSDSVDDSEVKALQFAASRLNITSPKAI 184
Query: 181 LIEKRSIKKLLDKVGDSDQSKIKVLKYLFYLLKKYGNSVLGEQ--------KDNACAQEE 232
+IE+RSI+KLL+K+G +D K +L+YL +LLK++G ++GE ++ A +
Sbjct: 185 IIEQRSIRKLLEKLGPNDLKKKNILRYLLHLLKRHGKLMVGEHVEKLYSRSEEQAATENS 244
Query: 233 GSYTVCSQSFEVDSRVGDRKFGAQTNNLSR-AIIPEVFKCPLSLRLMYDPVVIESGQTFE 291
++ S E DS + ++ TN LS A + E +KCP+S RLMYDPV+IESG T+E
Sbjct: 245 SHGSLRSNHVESDSSMNYGQYKTHTNELSGVAPLEEYYKCPISSRLMYDPVIIESGVTYE 304
Query: 292 RMWIQKWFEEGNHTCPKTKMKLVCQSLTPNTAMKDLISKWCMN----------------- 334
R+WI+KWF+EGN CPKT+ KLV LTPN AMKDLIS+WC N
Sbjct: 305 RIWIKKWFDEGNDICPKTRKKLVNMGLTPNMAMKDLISEWCKNNGVSIPDPSRHAEDIRT 364
Query: 335 ----------LCSSMNDLHVPLDISNMSLGSLDTSYGSDTSSNKIADGSN---------- 374
L S ND P+D+SNMS+GSLDTS+ SD S K GSN
Sbjct: 365 WETSNTSINSLASYFNDFTAPVDLSNMSIGSLDTSFSSDASHCKTTSGSNLMQTKSRDNS 424
Query: 375 -RTPLWTNVHDID---LSRLTELNWDCQCKVIEDYETRLEHDNQVSHSLSSTNFVEPLIR 430
+ T +HD D L +L++L WD QCKVI+D + L+ ++Q S+S+ NF+EPL+R
Sbjct: 425 HKHQAHTEIHDTDLMLLPQLSDLQWDSQCKVIQDLKDHLKSNSQAFVSVSAENFIEPLVR 484
Query: 431 FLRDARDLHDSRAQRIGCRLLLAFVSKNRSGIPYLNEDLFSLLASFLHSAAATEETLAIL 490
FL +A DL D + R G +LLL FV+ R+G L+ED F +LASFL S ETLAI+
Sbjct: 485 FLSNAYDLRDVQVLRAGSQLLLEFVNNCRNGKTNLSEDTFIMLASFLDSEVIG-ETLAIM 543
Query: 491 VALSSYAYFISKIVASGALASILNMLDSPNGKFQELAIKILHNLSSDVDIQSHIAPSEFL 550
LS Y + +KI AS AL+SILNMLDS N FQ+ AI+I++NLS ++ + +
Sbjct: 544 EELSGYGFGKTKIAASSALSSILNMLDSENKGFQQQAIRIMYNLSFSGEVCHRMLSLRCI 603
Query: 551 PKLVPFLKDATLAVSCLVILKNMCNTEHARVCVVETSGCLPSVAELLEIGSEEDQEHAVA 610
PKL+PF KD TL C+ ILKN+C+TE R V ET GC+ SVAE+LE G+ E+QEHA+A
Sbjct: 604 PKLLPFFKDRTLLRYCIYILKNLCDTEEGRKSVSETKGCISSVAEILETGNNEEQEHALA 663
Query: 611 ILLCLCSQRDQYCKLVM--NEGVIPSLVKISVYGNDKAKVSALELRRLLRDVAYSVEQQC 668
+L+ LCSQ YCKL+M +E ++ SL IS GNDK K SALEL LL+DV +V + C
Sbjct: 664 VLVSLCSQHVDYCKLIMREHEEIMGSLFYISQNGNDKGKESALELFYLLKDVDIAVNKNC 723
Query: 669 FGSEIDTS-KDASSDPRKEKPSSKTSRIFGWKFPKLSKKS 707
I+ S +D++S R+EK K S F K + SK S
Sbjct: 724 PEPNINNSCRDSNSHDREEKKPLKRS-TFLKKLSQFSKSS 762
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356540765|ref|XP_003538855.1| PREDICTED: U-box domain-containing protein 5-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 631 bits (1627), Expect = e-178, Method: Compositional matrix adjust.
Identities = 366/760 (48%), Positives = 491/760 (64%), Gaps = 60/760 (7%)
Query: 1 MGTDESEIVEIWSSPTSFKVHHGMCTQLSKFVERIAKVFPEIEAARPRCSSGVQALCLLN 60
M TD E E+ +P SFKVH +CT+L++ V+RI+++ P+IEAARP SSG+++LCLLN
Sbjct: 1 MVTDIGEGEEL-QNPRSFKVHSKICTELTELVDRISRIVPDIEAARPGYSSGIESLCLLN 59
Query: 61 NAIGKAKSLLQYCSESSKLYLAITGGVIVSRCMRSTNMMEQSLSQIESMVPVMLAVEISQ 120
NAI K K LLQ+CSE SK YLA+TG ++SRC+++T +E+SL QI+ MVPVMLAVE+S+
Sbjct: 60 NAIDKVKLLLQHCSECSKFYLAMTGDTVLSRCLKATRSLEKSLIQIQDMVPVMLAVEVSR 119
Query: 121 IIDDLREATFILDSSDEEAGKVLRELLQEDVSAIDSLEFSEIKALQLAASRLCITSPKAI 180
II DL +LD ++E+AG+V+RELL DS + SE+KALQ AAS L ITSPKAI
Sbjct: 120 IIHDLECTRLVLDPNEEKAGRVVRELL---TLTSDSADDSEVKALQFAASTLNITSPKAI 176
Query: 181 LIEKRSIKKLLDKVGDSDQSKIKVLKYLFYLLKKYGNSVLGEQ--------KDNACAQEE 232
LIE+RSIKKLLDK+G +D K K+L+YL YLLKK+G ++GE ++ A +
Sbjct: 177 LIEQRSIKKLLDKLGPNDLPKKKILRYLLYLLKKHGKLMVGEHVEEVYSRSEEQAATENS 236
Query: 233 GSYTVCSQSFEVDSRVGDRKFGAQTNNLSRAIIPEVFKCPLSLRLMYDPVVIESGQTFER 292
++ S + D+ + ++ TN LS E +KCP+S RLMYDPV+I+SG T+ER
Sbjct: 237 NHDSLRSHHVDSDTILKYGQYKTHTNELSGVAPLEEYKCPISSRLMYDPVIIDSGVTYER 296
Query: 293 MWIQKWFEEGNHTCPKTKMKLVCQSLTPNTAMKDLISKWCMN------------------ 334
MWI+KWF+EGN CPKT+ KLV LTPN AMKDLISKWC N
Sbjct: 297 MWIKKWFDEGNDICPKTRKKLVHMGLTPNMAMKDLISKWCRNNGVSIPDPSRHAEDICAW 356
Query: 335 ---------LCSSMNDLHVPLDISNMSLGSLDTSYGSDTSSNKIADGSN----------- 374
L S ND P+D+S+MS+G LDTS+ D S K GSN
Sbjct: 357 EASNTSISSLGSYFNDFTAPVDLSSMSIGPLDTSFSLDASHGKTTRGSNLMQTKSRDNSH 416
Query: 375 RTPLWTNVHDID---LSRLTELNWDCQCKVIEDYETRLEHDNQVSHSLSSTNFVEPLIRF 431
+ T +HD D L +L +L WD QCKVI+D + L+ ++Q S+S+ NF+EPL+RF
Sbjct: 417 KHQAHTEIHDTDLMLLPQLCDLQWDSQCKVIQDLKDNLKSNSQAFVSVSAENFIEPLVRF 476
Query: 432 LRDARDLHDSRAQRIGCRLLLAFVSKNRSGIPYLNEDLFSLLASFLHSAAATEETLAILV 491
L +A DL D +A R G +LLL FV+ R+G LNED F +LASFL+S ETLAI+
Sbjct: 477 LSNAYDLRDIKALRAGTQLLLEFVNNCRNGTTNLNEDTFIMLASFLNSDVIG-ETLAIME 535
Query: 492 ALSSYAYFISKIVASGALASILNMLDSPNGKFQELAIKILHNLSSDVDIQSHIAPSEFLP 551
LS Y + +KI AS AL+SILNMLDS N FQ+ AI+I++NLS ++ + +P
Sbjct: 536 ELSGYGFSKAKIAASSALSSILNMLDSENKGFQQQAIRIMYNLSFSGEVCPRMLSLRCIP 595
Query: 552 KLVPFLKDATLAVSCLVILKNMCNTEHARVCVVETSGCLPSVAELLEIGSEEDQEHAVAI 611
KL+PF KD TL C+ ILKN+C+TE R V ET GCL SVAE+L+ G+ E+QEHA+A+
Sbjct: 596 KLLPFFKDRTLLRYCIYILKNLCDTEEGRKSVSETKGCLSSVAEILDTGNNEEQEHALAV 655
Query: 612 LLCLCSQRDQYCKLVM--NEGVIPSLVKISVYGNDKAKVSALELRRLLRDVAYSVEQQCF 669
L+ LCSQ YCKLVM +E +I L+ IS GND+ K SALEL LL+D+ + + C
Sbjct: 656 LVSLCSQHVDYCKLVMREDEHIISLLIYISQNGNDRGKGSALELLHLLKDIDIAENEGCP 715
Query: 670 GSEI-DTSKDASS-DPRKEKPSSKTSRIFGWKFPKLSKKS 707
I ++S+D++S P + +PS K++ F K SK S
Sbjct: 716 EPNINNSSRDSNSYHPEENQPSKKST--FLKKLSPFSKSS 753
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357483491|ref|XP_003612032.1| U-box domain-containing protein [Medicago truncatula] gi|355513367|gb|AES94990.1| U-box domain-containing protein [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 617 bits (1591), Expect = e-174, Method: Compositional matrix adjust.
Identities = 345/749 (46%), Positives = 467/749 (62%), Gaps = 60/749 (8%)
Query: 1 MGTDESEIVEIWSSPTSFKVHHGMCTQLSKFVERIAKVFPEIEAARPRCSSGVQALCLLN 60
M T+ EIVE + + SF+VH +C +L K V+ I ++FP+IE ARPRCSSG+++LC LN
Sbjct: 1 MRTNSGEIVETFPNTLSFQVHSKICIELMKIVDSIMRIFPDIEEARPRCSSGIESLCFLN 60
Query: 61 NAIGKAKSLLQYCSESSKLYLAITGGVIVSRCMRSTNMMEQSLSQIESMVPVMLAVEISQ 120
N+I KAK LLQ+CSE SKLYLA+TG ++SRC ++ +EQSL I+ MVPVMLAVE+S+
Sbjct: 61 NSIEKAKLLLQHCSECSKLYLAVTGETVLSRCQKAKKSLEQSLIPIQGMVPVMLAVEVSR 120
Query: 121 IIDDLREATFILDSSDEEAGKVLRELLQEDVSAIDSLEFSEIKALQLAASRLCITSPKAI 180
IIDDL ATF+LD ++EEAG+V+RELL + S DS++ E+KALQ AA RL ITS KAI
Sbjct: 121 IIDDLEYATFVLDFAEEEAGRVVRELLHQG-STSDSVDDFEVKALQFAAPRLNITSQKAI 179
Query: 181 LIEKRSIKKLLDKVGDSDQSKIKVLKYLFYLLKKYGN-SVLGEQKDNACAQEE------- 232
LIE+RSIKK LDKVG +D K +L+YL YL+KK+GN V+GE +N ++ E
Sbjct: 180 LIERRSIKKFLDKVGPNDPKKKTILRYLMYLMKKHGNLMVVGEHMENFYSRSEEPIARDN 239
Query: 233 -GSYTVCSQSFEVDSRVGDRKFGAQTNNLSRAIIPEVFKCPLSLRLMYDPVVIESGQTFE 291
+ E + + + N R PE +KCP+S RLM+DPV+I SG T+E
Sbjct: 240 SSRDSRRRNRVESHHSMNYDQNKTEMNQSDRVAPPEEYKCPISSRLMHDPVIIASGVTYE 299
Query: 292 RMWIQKWFEEGNHTCPKTKMKLVCQSLTPNTAMKDLISKWCMN----------------- 334
RMWI+KW EG CPKT+ +L +LTPN MKDLISKWC N
Sbjct: 300 RMWIRKWINEGKTICPKTEKELPHMTLTPNIVMKDLISKWCKNNGVTIPDPSRHTEDFML 359
Query: 335 ----------LCSSMNDLHVPLDISNMSLGSLDTSYGSDTSSNKIADGSN---------- 374
L S NDL++P+D++NMSLGSLD S+ SD S K N
Sbjct: 360 LDASITSIKSLGSYFNDLNLPMDLTNMSLGSLDNSFSSDVSRVKTNHALNLMMTKSNENS 419
Query: 375 ---RTPLWTNVHDID---LSRLTELNWDCQCKVIEDYETRLEHDNQVSHSLSSTNFVEPL 428
+ + +HD D L +L +L WD QCKVIED + ++ ++Q S+S+ N VEP+
Sbjct: 420 HPHKDTVHAEIHDTDLMLLPQLHDLQWDSQCKVIEDLKDHMKSNSQAILSVSAENLVEPV 479
Query: 429 IRFLRDARDLHDSRAQRIGCRLLLAFVSKNRSGIPYLNEDLFSLLASFLHSAAATEETLA 488
+RFL +A D HD +A R G +LL FV+ RSG+ L+ED F LA+ L S + LA
Sbjct: 480 VRFLSNANDRHDLKALRAGTQLLSEFVNNCRSGMADLSEDTFIKLANLLDSEVIG-DVLA 538
Query: 489 ILVALSSYAYFISKIVASGALASILNMLDSPNGKFQELAIKILHNLSSDVDIQSHIAPSE 548
I+ LS +KI AS AL S+L +LDS N Q+ AI+I++NLS + ++ H+
Sbjct: 539 IMEELSGDGNSKAKIAASSALTSVLKLLDSDNKGCQQHAIRIIYNLSFNSEVCPHMVSVN 598
Query: 549 FLPKLVPFLKDATLAVSCLVILKNMCNTEHARVCVVETSGCLPSVAELLEIGSEEDQEHA 608
+PKL+PF KD + C+ ILKN+C+TE R + ET GC+ S+AE+LE GS E+QEHA
Sbjct: 599 CIPKLLPFFKDRAVLRYCIYILKNICDTEEGRNSIAETKGCISSIAEILESGSNEEQEHA 658
Query: 609 VAIL--LCLCSQRDQYCKLVMNEGVIPSLVKISVYGNDKAKVSALELRRLLRDVAYSVEQ 666
+ +L LC CSQ YCKL+++E VI L IS GNDK K SALEL +LRD Y VE
Sbjct: 659 LDVLLSLCTCSQNVDYCKLILDEDVITPLFYISQNGNDKGKESALELLHILRDAKY-VEN 717
Query: 667 QCFGSEI---DTSKDASSDPRKEKPSSKT 692
+ S+ ++S D++S P + + S K+
Sbjct: 718 EDRSSQPITNNSSTDSNSHPEENRSSKKS 746
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356561227|ref|XP_003548884.1| PREDICTED: U-box domain-containing protein 5-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 608 bits (1568), Expect = e-171, Method: Compositional matrix adjust.
Identities = 351/749 (46%), Positives = 469/749 (62%), Gaps = 64/749 (8%)
Query: 1 MGTDESEIVEIWSSPTSFKVHHGMCTQLSKFVERIAKVFPEIEAARPRCSSGVQALCLLN 60
MGTD SE+VE +P SFKVH MC +L K V+RI ++ P+IEAARP SG+QALCLLN
Sbjct: 1 MGTDGSELVETLPNPRSFKVHRTMCAELRKLVDRILRIIPQIEAARP---SGMQALCLLN 57
Query: 61 NAIGKAKSLLQYCSESSKLYLAITGGVIVSRCMRSTNMMEQSLSQIESMVPVMLAVEISQ 120
AI KAK LL YCSESSKLYLAITG I+S+ ++ + QSL QI +MVPVMLA EIS+
Sbjct: 58 EAIDKAKQLLLYCSESSKLYLAITGDSILSKFQKARKSLTQSLVQILNMVPVMLAAEISR 117
Query: 121 IIDDLREATFILDSSDEEAGKVLRELLQED--VSAIDSLEFSEIKALQLAASRLCITSPK 178
+I D TF+L+S+++ AGKV+++LLQ+D S DS+E SE+K Q A+RL ITSP
Sbjct: 118 LIGDFECVTFVLNSAEQAAGKVMKQLLQQDPSTSDKDSMEESELKDFQFVAARLGITSPT 177
Query: 179 AILIEKRSIKKLLDKVGDSDQSKIKVLKYLFYLLKKYGNSVLGEQKDNACAQEEGSYTVC 238
AILIE+RSI+KLL+K+ +DQ+K +LK L +LL K+ S+ GEQ + +Q EG T
Sbjct: 178 AILIERRSIQKLLEKLKPNDQTKEIILKNLLFLLIKHRKSITGEQME-VYSQSEGPITTQ 236
Query: 239 SQSFEVDSRVGDR--------KFGAQTNNLSRAIIPEVFKCPLSLRLMYDPVVIESGQTF 290
+ E + + ++ + LSR PE + CP+SLRLMYDPVVI SG+T+
Sbjct: 237 NSDHESQKNLHVKSYLYLNHGQYRTHASELSRLTPPEEYTCPISLRLMYDPVVIASGKTY 296
Query: 291 ERMWIQKWFEEGNHTCPKTKMKLVCQSLTPNTAMKDLISKWC------------------ 332
ERMWIQKWF+EGN CPKTK +L +LTPN A+KDLI WC
Sbjct: 297 ERMWIQKWFDEGNTICPKTKKELAHMALTPNVALKDLILNWCKTNGVSIPDPRRHVQDFH 356
Query: 333 ---------MNLCSSMNDLHVPLDISNMSLGSLDTSYGSDTSS-----------NKIADG 372
+ SS+ DL+ P+D SNMSLGSLDTSY SD+S NK +D
Sbjct: 357 SWEASSNSIRSFGSSLYDLNFPMDFSNMSLGSLDTSYNSDSSHTKANHSLNLMLNKSSDN 416
Query: 373 SNRTPLWTNVHDID---LSRLTELNWDCQCKVIEDYETRLEHDNQVSHSLSSTNFVEPLI 429
S R +HD D LS+L E W+ QC+VIE+ + + + Q S+SS +F++PL
Sbjct: 417 SRRHQSHVRIHDADRMHLSKLHERQWESQCQVIENMKIDFKCNYQAFCSVSSESFIDPLT 476
Query: 430 RFLRDARDLHDSRAQRIGCRLLLAFVSKNRSGIPYLNEDLFSLLASFLHSAAATEETLAI 489
RFL A + HD +A R G +LL+ F+ R+G+ L+ED +LAS L + A E L I
Sbjct: 477 RFLSTACERHDVKALRAGTKLLMEFMKCCRNGMTNLSEDTCIMLASLLDTEAIG-EALTI 535
Query: 490 LVALSSYAYFISKIVASGALASILNMLDSPNGKFQELAIKILHNLSSDVDIQSHIAPSEF 549
+ L+ Y + + AS L S+ +LDS N +FQ AIKI++N SS+ I ++
Sbjct: 536 MEELTGNWYEKANVAASSVLTSVSKILDSGNEEFQRKAIKIMYNFSSNGQICPYMVSLGC 595
Query: 550 LPKLVPFLKDATLAVSCLVILKNMCNTEHARVCVVETSGCLPSVAELLEIGSEEDQEHAV 609
+PKL+PF +D TL + ILKN+C+TE RV VVET GC+ SV E+L GS+E++E A+
Sbjct: 596 IPKLLPFFEDRTLLRDSIHILKNLCDTEEGRVTVVETKGCISSVVEILGTGSDEEKEPAL 655
Query: 610 AILLCLCSQRDQYCKLVMNEGVIPSLVKISVYGNDKAKVSALELRRLLRDVAYSVEQQCF 669
ILL LCSQR +YC+LV++EG+IPSLV IS G+D AK ALEL RLL+D + E C
Sbjct: 656 IILLSLCSQRVEYCQLVVSEGIIPSLVNISNKGSDMAKAYALELLRLLKDDEFQYEDCC- 714
Query: 670 GSEIDTSKDASSDPR---KEKPSSKTSRI 695
+ + AS +P +EK SSK I
Sbjct: 715 ----EPNLGASQEPNNHYQEKKSSKKPSI 739
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 710 | ||||||
| TAIR|locus:2115365 | 718 | AT4G36550 [Arabidopsis thalian | 0.953 | 0.942 | 0.351 | 7.6e-96 | |
| TAIR|locus:2008813 | 782 | AT1G67530 [Arabidopsis thalian | 0.460 | 0.418 | 0.361 | 8.5e-77 | |
| TAIR|locus:2032472 | 771 | AT1G24330 [Arabidopsis thalian | 0.584 | 0.538 | 0.319 | 5.9e-74 | |
| TAIR|locus:2010424 | 768 | PUB45 "plant U-box 45" [Arabid | 0.608 | 0.562 | 0.331 | 5.3e-73 | |
| TAIR|locus:2075140 | 660 | PUB13 "plant U-box 13" [Arabid | 0.384 | 0.413 | 0.290 | 7e-27 | |
| UNIPROTKB|Q5VRH9 | 611 | PUB12 "U-box domain-containing | 0.097 | 0.112 | 0.594 | 7.9e-27 | |
| TAIR|locus:2045334 | 829 | PUB4 "plant U-box 4" [Arabidop | 0.215 | 0.184 | 0.345 | 8.5e-27 | |
| TAIR|locus:2102455 | 760 | AT3G54790 [Arabidopsis thalian | 0.221 | 0.206 | 0.329 | 4.3e-26 | |
| TAIR|locus:2158252 | 707 | AT5G67340 [Arabidopsis thalian | 0.315 | 0.316 | 0.286 | 7.3e-26 | |
| TAIR|locus:2017719 | 612 | AT1G23030 [Arabidopsis thalian | 0.108 | 0.125 | 0.493 | 4.8e-25 |
| TAIR|locus:2115365 AT4G36550 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 953 (340.5 bits), Expect = 7.6e-96, P = 7.6e-96
Identities = 254/722 (35%), Positives = 379/722 (52%)
Query: 15 PTSFKVHHGMCTQLSKFVERIAKVFPEIEAARPRCSSGVQALCLLNNAIGKAKSLLQYCS 74
P S+K+H MC +L + V+RI ++FP+IE ARP CSSG+Q LCLL+NA+ K K LLQYCS
Sbjct: 10 PQSYKMHSSMCLELKRLVDRIMRIFPDIEDARPGCSSGIQTLCLLHNALDKTKQLLQYCS 69
Query: 75 ESSKLYLAITGGVIVSRCMRSTNMMEQSLSQIESMVPVMLAVEISQIIDDLREATFILDS 134
ESSKLY+A+TG I++R R+ +EQ L+ I S+VP +L ++ISQI+ DLR L+
Sbjct: 70 ESSKLYMAVTGDAILARGSRAKKSLEQCLNDIRSIVPTILEIKISQIVQDLRSTQLTLEF 129
Query: 135 SDEEAGKVLRELLQEDVSAIDSLEFSEIKALQLAASRLCITSPKAILIEKRSIKKLLDKV 194
S+EEAGK +REL+Q+ S+ S + EIK AA +L +++P+AI+ E+RS+K + +
Sbjct: 130 SEEEAGKAIRELMQKSTSSSASPD--EIKDFHYAALKLQLSTPEAIVTERRSLKIICE-- 185
Query: 195 GDSDQSKIXXXXXXXXXXXXXGNSVLGEQKDNACAQEEGSYTVCSQSFEVDSRVGDRKFG 254
D Q+ ++ N E+ C+ S V + D
Sbjct: 186 -DHKQNSFTHHQSIDDSLHANAAEAEASEEHNGTLPEKFK---CTLSRTV---MYDPVII 238
Query: 255 AQTNNLSRAIIPEVF-----KCPLSLRLMYDPVVIESGQTFERMWIQKWFEEGNHTC--P 307
+ N R I + F CP+S R + D ++ + I +W + P
Sbjct: 239 SSGNTFERMQIQKWFDEGNDSCPISKRKL-DDFTLKPNVELKSQ-ISEWCAKNGLDVQDP 296
Query: 308 KTKMKLVCQSLTPNTAMKDLISKWCMNLCS----SMNDLHVPLDISNMSLGSLDTSYGSD 363
K S+ + ++ S N+ S+ D + I + S + G
Sbjct: 297 ARKHVKASNSIDFSVSIASFGSS-LYNIPDHSGISITDFNSSYSIDSSSYSKMSKG-GYF 354
Query: 364 TSSNKI--ADGSNRTPLWTNVHDID-LSRLTELNWDCQCKVIEDYETRLEHDNQVSHSLS 420
T +I A G+ T + +ID L LT L WD Q KV+ED +R EH + S+S
Sbjct: 355 TPMQRIDSASGAGDTDSSHSEIEIDPLCGLTNLPWDAQIKVVEDVRSRFEHSTRAFRSMS 414
Query: 421 STNFVEPLIRFLRDARDLHDSRAQRI--GCRLLLAFVSKNRSGIPYLNEDXXXXXXXXXX 478
+ F+EPLI +L++A + + + + I G LLLAF+S NR I L E+
Sbjct: 415 PSKFLEPLITYLKNALERNGTAGEIIKGGLDLLLAFLSGNRRAIESLEEEVFKMFSVFLE 474
Query: 479 XXXXTEETLAILVALSSYAYFISKIVASGALASILNMLDSPNGKFQELAIKILHNLSSDV 538
EE L IL LS++ + SKI +SG+L+S+L +++S QE A+ L NLSS +
Sbjct: 475 SEVVAEEALNILEVLSNHPHGPSKITSSGSLSSLLKIVESQAEHLQEQAMITLKNLSSSM 534
Query: 539 DIQSHIAPSEFLPKLVPFLKDATLAVSCLVILKNMCNTEHARVCVVETSGCLPSVAELLE 598
+I + +F+ KL FL+ ++ILKN+C+TE R C+ ET CL S+AELLE
Sbjct: 535 EICLEMVSLDFIQKLTSFLQQKVFCKHSIIILKNLCSTEKGRGCITETPDCLASIAELLE 594
Query: 599 IGSEEDQEHAVAILLCLCSQRDQYCKLVMNEG--VIPSLVKISVYGNDKAKVSALELRRL 656
E+QE+A++ILL LC Q+ +YC LV+ E + SL+ IS G ++ KVSA EL R
Sbjct: 595 SNVPEEQENAISILLQLCVQKIEYCCLVVREATDIYSSLILISNNGTEEVKVSASELLRA 654
Query: 657 LRDVAYSVEQQCFGSEIDTSKDASS------------DPRKEKPSSKTSRIFGWKFPKLS 704
L +V E++ S + +S +P K PS K S +FG+ F L
Sbjct: 655 LVEVDSDKEEEEEVSSRPEGRTTASPTSQVVTPVTHPEPVKITPSPKKSGLFGFNFSSLK 714
Query: 705 KK 706
KK
Sbjct: 715 KK 716
|
|
| TAIR|locus:2008813 AT1G67530 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 555 (200.4 bits), Expect = 8.5e-77, Sum P(2) = 8.5e-77
Identities = 123/340 (36%), Positives = 200/340 (58%)
Query: 4 DESEIVEIWSSPTSFKVHHGMCTQLSKFVERIAKVFPEIEAARPRCSSGVQALCLLNNAI 63
D +E+ E + + K+H MC +LS + ++ +FP +E ARPR SG+QALC L+ A+
Sbjct: 2 DVTELEENLFAASDAKLHGDMCKELSGVLCKVLSIFPSLEGARPRSKSGIQALCSLHIAL 61
Query: 64 GKAKSLLQYCSESSKLYLAITGGVIVSRCMRSTNMMEQSLSQIESMVPVMLAVEISQIID 123
KAK++LQ+CSE SKLYLAITG ++ + ++ + L ++E +VP + +I +I+
Sbjct: 62 EKAKNILQHCSECSKLYLAITGDAVLLKFEKAKIALIDGLKRVEDIVPSSIGSQILEIVG 121
Query: 124 DLREATFILDSSDEEAGKVLRELLQEDVSAIDSLEFSEIKALQLAASRLCITSPKAILIE 183
+L F+LD S++E G + LLQ+ + + +E++ AA+RL ITS + L E
Sbjct: 122 ELENTRFMLDPSEKEVGDQIIALLQQGKKFDNCNDNTELEIFHRAATRLSITSSRVALAE 181
Query: 184 KRSIKKLLDKV-GDSDQSK---IXXXXXXXXXXXXXGNSVLGEQKDNA----CAQEEGSY 235
+R++KKL+D+ + D+ K + S + ++ D+ C+ E
Sbjct: 182 RRALKKLIDRARAEEDKRKESIVAYLLHLMRKCSKLFRSEILDENDSPGSYPCSPNEDHG 241
Query: 236 TVCSQSFEVDSRVG---DRKFGAQTNNLSRAIIPEVFKCPLSLRLMYDPVVIESGQTFER 292
+V ++ SR G D+ + N+ + PE +CP+SL+LM DPV+I SGQT+ER
Sbjct: 242 SVHGFGRQL-SRFGSLNDKPMNS-INSGQMPVPPEELRCPISLQLMCDPVIIASGQTYER 299
Query: 293 MWIQKWFEEGNHTCPKTKMKLVCQSLTPNTAMKDLISKWC 332
+ I+KWF +G++TCPKT+ +L SLTPN +K LI+ WC
Sbjct: 300 VCIEKWFSDGHNTCPKTQQQLPHISLTPNNCVKGLIASWC 339
|
|
| TAIR|locus:2032472 AT1G24330 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 558 (201.5 bits), Expect = 5.9e-74, Sum P(2) = 5.9e-74
Identities = 143/447 (31%), Positives = 237/447 (53%)
Query: 4 DESEIVEIWSSPTSFKVHHGMCTQLSKFVERIAKVFPEIEAARPRCSSGVQALCLLNNAI 63
D SE+ E + + K+H MC +LS ++ +FP +E ARPR SG+Q LC L+ A+
Sbjct: 2 DVSELEENLFAASDAKLHGDMCKELSAVYCKVLSIFPSLEEARPRSKSGIQTLCSLHIAL 61
Query: 64 GKAKSLLQYCSESSKLYLAITGGVIVSRCMRSTNMMEQSLSQIESMVPVMLAVEISQIID 123
KAK++LQ+CSE SKLYLAITG ++ + ++ + + SL ++E +VP + +I I+
Sbjct: 62 EKAKNILQHCSECSKLYLAITGDAVLLKFEKAKSALIDSLRRVEDIVPSSIGSQILDIVG 121
Query: 124 DLREATFILDSSDEEAGKVLRELLQEDVSAIDSLEFSEIKALQLAASRLCITSPKAILIE 183
+L F+LD S++E G + LLQ+ + + +E++ AA+RL ITS ++ L E
Sbjct: 122 ELEHTKFLLDPSEKEVGDRIIALLQQGKKFDNGSDSTELEIFHQAATRLSITSSRSALAE 181
Query: 184 KRSIKKLLDKVG-DSDQSK---IXXXXXXXXXXXXXGNSVLGEQKDNACAQE-----EGS 234
+R++KK++D+ + D+ K + S + ++ D+ C+ +G
Sbjct: 182 RRALKKVIDRARVEEDKRKESIVAYLLHLMRKYSKLFRSEMMDENDSPCSTPCSPTGQGP 241
Query: 235 YTVCSQSFEVD-SRVGDRKFGAQTNNLS--RAIIPEVFKCPLSLRLMYDPVVIESGQTFE 291
+F S+ G + + S I PE +CP+SL+LMYDPV+I SGQT+E
Sbjct: 242 NEDRVNAFGRQLSKFGSINYKPMNSRKSGQMPIPPEELRCPISLQLMYDPVIIASGQTYE 301
Query: 292 RMWIQKWFEEGNHTCPKTKMKLVCQSLTPNTAMKDLISKWCMNLCSSMNDLHVPLDISNM 351
R+ I+KWF +G+++CPKT+ +L SLTPN +K LI+ WC N + VP
Sbjct: 302 RVCIEKWFSDGHNSCPKTQQQLPHLSLTPNYCVKGLIASWC-----EQNGITVPTGPPE- 355
Query: 352 SLGSLDTSYGSDTSSNKIADGSNRTPLWTNVHDIDLSRLTELNWDCQCKVIEDYETRLEH 411
SLD +Y ++A + +P N +D L D + +E+ T +E
Sbjct: 356 ---SLDLNYW------RLAMSDSESP---NSKSVDSVGLCTPK-DIRVVPLEESST-IES 401
Query: 412 DNQVSHSLSSTNFVEPLIRFLRDARDL 438
+ Q ++ + V+ I L +D+
Sbjct: 402 ERQQKEKNNAPDEVDSEINVLEGYQDI 428
|
|
| TAIR|locus:2010424 PUB45 "plant U-box 45" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 560 (202.2 bits), Expect = 5.3e-73, Sum P(2) = 5.3e-73
Identities = 155/468 (33%), Positives = 246/468 (52%)
Query: 4 DESEIVEIWSSPTSFKVHHGMCTQLSKFVERIAKVFPEIEAARPRCSSGVQALCLLNNAI 63
D +E+ E + +P K+H MC LS +I +FP +EAARPR SG+QALC L+ +
Sbjct: 2 DVNEVEENFFAPGDAKLHGKMCNALSVIYCKIMSIFPSLEAARPRSKSGIQALCSLHVVL 61
Query: 64 GKAKSLLQYCSESSKLYLAITGGVIVSRCMRSTNMMEQSLSQIESMVPVMLAVEISQIID 123
K K++L++C+ESSKLYLAITG +V + ++ + + SL ++E +V + ++ +I+
Sbjct: 62 EKVKNILRHCTESSKLYLAITGDSVVLKFEKAKSSLTDSLRRVEDIVQQSIGSQLLEILM 121
Query: 124 DLREATFILDSSDEEAGKVLRELLQEDVSAIDSLEFSEIKALQLAASRLCITSPKAILIE 183
+L F LD +++E G + LLQ+ + S + +E++ AA+RL ITS +A L E
Sbjct: 122 ELENTEFSLDPAEKEIGDQIIGLLQQGGNFESSSDNNELEVFHQAATRLGITSSRAALTE 181
Query: 184 KRSIKKLLDKVG-DSDQSKIXXXXXXXXXXXXXGNSVLGEQKDNACAQEEGSYTVCSQSF 242
+R +KKL+++ + D+ K E D+ +Q S CS +
Sbjct: 182 RRCLKKLIERARMEDDKRKESIVAYLLHLMRKYSKLFRSEIWDDNDSQGSSSLP-CSPTI 240
Query: 243 E--VDSRVG---DRK------FGAQTNNLSR-----AIIPEVFKCPLSLRLMYDPVVIES 286
+ +D G DR+ F ++ N +R ++ PE +CP+SL+LMYDPV+I S
Sbjct: 241 QGSIDDAHGRAFDRQLSKLSSFNFRSCNNNRRSSQMSVPPEELRCPISLQLMYDPVIIAS 300
Query: 287 GQTFERMWIQKWFEEGNHTCPKTKMKLVCQSLTPNTAMKDLISKWCMNLCSSMNDLHVPL 346
GQT+ER+ I+KWF +G++TCPKT +L LTPN +K LIS WC N + VP
Sbjct: 301 GQTYERICIEKWFSDGHNTCPKTHQQLSHLCLTPNYCVKALISSWC-----EQNGVQVP- 354
Query: 347 DISNMSLG------SLDTSYGSDTSSNKIADGSNRTPLWTNVHDIDLSRLTELNWD-CQC 399
D SL +L S +DT S K GS + +V + L + + C+
Sbjct: 355 DGPPESLDLNYWRLALSVSESTDTRSAKRV-GSCKLK---DVKVVPLEESGTIKEEACES 410
Query: 400 KVIEDYETRLEHDNQVSHSLSSTNFVEPLIRFLRDARDL-HDSRAQRI 446
+ ED T +E ++ +L+ + + R + R L D RI
Sbjct: 411 EYQEDQVTLVERCTELLTTLTDVDTLRKKCRVVEQIRVLLKDDEEARI 458
|
|
| TAIR|locus:2075140 PUB13 "plant U-box 13" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 259 (96.2 bits), Expect = 7.0e-27, Sum P(2) = 7.0e-27
Identities = 90/310 (29%), Positives = 148/310 (47%)
Query: 73 CSESSKLYLAITGG---VIVSRCMRSTNMMEQSLSQIESMVPVMLAVEISQIIDDLREAT 129
CS L G +++ R ++ +ME S+ +S+ + E I D++RE
Sbjct: 73 CSAKDYLKFCSQGSKIYLVMEREQVTSKLMEVSVKLEQSLSQI--PYEELDISDEVREQV 130
Query: 130 FILDSSDEEA-GKVLRELLQEDVSAIDSLEFSEIKALQLAASRLCITSPKAILIEKRSIK 188
++ S A G+V DVS D L + ++++L +S + P ++E R K
Sbjct: 131 ELVLSQFRRAKGRV-------DVSD-DEL-YEDLQSLCNKSSDVDAYQP---VLE-RVAK 177
Query: 189 KL-LDKVGDSDQSKIXXXXXXXXXXXXXGNS------VLGEQKDNACAQEEGSYTVCSQS 241
KL L ++ D Q + G + VL KD +++ Q
Sbjct: 178 KLHLMEIPDLAQESVALHEMVASSGGDVGENIEEMAMVLKMIKDFVQTEDDNGE---EQK 234
Query: 242 FEVDSRVGDRKFGAQTNNLSRAIIPEVFKCPLSLRLMYDPVVIESGQTFERMWIQKWFEE 301
V+SR + A + + +IP+ F+CP+SL +M DPV++ SGQT+ER I+KW E
Sbjct: 235 VGVNSRSNGQTSTAASQKIP--VIPDDFRCPISLEMMRDPVIVSSGQTYERTCIEKWIEG 292
Query: 302 GNHTCPKTKMKLVCQSLTPNTAMKDLISKWCMNLCSSMNDLHVPLDISNMSLGSLDTSYG 361
G+ TCPKT+ L +LTPN ++ LI++WC ND+ P S++ + +S+
Sbjct: 293 GHSTCPKTQQALTSTTLTPNYVLRSLIAQWC-----EANDIEPPKPPSSLRPRKV-SSFS 346
Query: 362 SDTSSNKIAD 371
S +NKI D
Sbjct: 347 SPAEANKIED 356
|
|
| UNIPROTKB|Q5VRH9 PUB12 "U-box domain-containing protein 12" [Oryza sativa Japonica Group (taxid:39947)] | Back alignment and assigned GO terms |
|---|
Score = 236 (88.1 bits), Expect = 7.9e-27, Sum P(3) = 7.9e-27
Identities = 41/69 (59%), Positives = 52/69 (75%)
Query: 264 IIPEVFKCPLSLRLMYDPVVIESGQTFERMWIQKWFEEGNHTCPKTKMKLVCQSLTPNTA 323
IIP+ F+CP+SL LM DPV++ SGQT+ER IQKW + G+ TCPKT+ L SLTPN
Sbjct: 227 IIPDEFRCPISLELMQDPVIVSSGQTYERSCIQKWLDSGHKTCPKTQQPLSHTSLTPNFV 286
Query: 324 MKDLISKWC 332
+K LIS+WC
Sbjct: 287 LKSLISQWC 295
|
|
| TAIR|locus:2045334 PUB4 "plant U-box 4" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 217 (81.4 bits), Expect = 8.5e-27, Sum P(3) = 8.5e-27
Identities = 56/162 (34%), Positives = 89/162 (54%)
Query: 220 LGEQKDNACAQEEGSYTV--CSQSFEVDSRVGDRKFGA-QTNNLSRAIIPEVFKCPLSLR 276
L QK+ A Q E + V Q + +R+ +R QT S AI+ + F CPLSL
Sbjct: 187 LERQKEMA-EQSENNAEVEFLDQLIVIVNRMHERLLLIKQTQTSSVAILADFF-CPLSLE 244
Query: 277 LMYDPVVIESGQTFERMWIQKWFEEGNHTCPKTKMKLVCQSLTPNTAMKDLISKWCMNLC 336
+M DPV++ SGQT+E+ +I++W + G CPKT+ L +L PN +K LI+ WC
Sbjct: 245 VMTDPVIVSSGQTYEKAFIKRWIDLGLKVCPKTRQTLTHTTLIPNYTVKALIANWCETND 304
Query: 337 SSMNDLHVPLDISNMS--LGSLDT--SYGSDTSSNKIADGSN 374
+ D + ++ +S L D+ S G+D S+ K+++ S+
Sbjct: 305 VKLPDPNKSTSLNELSPLLSCTDSIPSTGADVSARKVSNKSH 346
|
|
| TAIR|locus:2102455 AT3G54790 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 197 (74.4 bits), Expect = 4.3e-26, Sum P(3) = 4.3e-26
Identities = 55/167 (32%), Positives = 87/167 (52%)
Query: 265 IPEVFKCPLSLRLMYDPVVIESGQTFERMWIQKWFEEGNHTCPKTKMKLVCQSLTPNTAM 324
IP F+CPLS LM DPV++ SGQTF+R I+KW + G CP+T+ L Q L PN +
Sbjct: 238 IPPYFRCPLSTELMLDPVIVASGQTFDRTSIKKWLDNGLAVCPRTRQVLTHQELIPNYTV 297
Query: 325 KDLISKWC----MNLCSSMNDLHVPLDISNMS--LGSLDTSYG-SDTSSNKIADGSNRTP 377
K +I+ W +NL ++ + D S+M+ +GS D + S S + + ++R+
Sbjct: 298 KAMIASWLEANRINLATNSCHQYDGGDASSMANNMGSQDFNRTESFRFSLRSSSLTSRSS 357
Query: 378 LWTN--VHDIDLSRLTELNWDCQCKVIEDYETRLEHDNQVSHSLSST 422
L T + ++ L + Q K +E +E L +HS S +
Sbjct: 358 LETGNGFEKLKINVSASLCGESQSKDLEIFEL-LSPGQSYTHSRSES 403
|
|
| TAIR|locus:2158252 AT5G67340 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 198 (74.8 bits), Expect = 7.3e-26, Sum P(2) = 7.3e-26
Identities = 69/241 (28%), Positives = 116/241 (48%)
Query: 99 MEQSLSQIESMVPVMLAVEISQIIDDLREATFILDSSDEEAGKVLRELLQEDVSAIDSLE 158
+++ Q +S P+ + I+ L A+ + +SS E ++L+ Q + + S
Sbjct: 77 VDELREQFQSWQPLSTRIFYVLRIESL--ASKLRESS-LEVFQLLKHCEQHLPADLISPS 133
Query: 159 FSE-IKALQLAA-SRLCITSPKAILIEKRSI---KKLLDKVGDSDQSKIXXXXXXXXXXX 213
F E I+ ++L A + T +A+ +K+ + ++L K+ +S +
Sbjct: 134 FEECIELVKLVARDEISYTIDQALKDQKKGVGPTSEVLVKIAESTGLR-SNQEILVEGVV 192
Query: 214 XXGNSVLGEQKDNACAQE--EGSYTVCSQSFEVDSRVGDRKFGAQTNNLSRAIIPEVFKC 271
E DN E +G ++ +Q E + D K AQ R +P F+C
Sbjct: 193 LTNMKEDAELTDNDTEAEYLDGLISLTTQMHEY---LSDIK-QAQLRCPVR--VPSDFRC 246
Query: 272 PLSLRLMYDPVVIESGQTFERMWIQKWFEEGNHTCPKTKMKLVCQSLTPNTAMKDLISKW 331
LSL LM DPV++ SGQTFER++IQKW + G CPKT+ L +LTPN ++ ++ W
Sbjct: 247 SLSLELMTDPVIVASGQTFERVFIQKWIDMGLMVCPKTRQALSHTTLTPNFIVRAFLASW 306
Query: 332 C 332
C
Sbjct: 307 C 307
|
|
| TAIR|locus:2017719 AT1G23030 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 217 (81.4 bits), Expect = 4.8e-25, Sum P(2) = 4.8e-25
Identities = 38/77 (49%), Positives = 54/77 (70%)
Query: 256 QTNNLSRAIIPEVFKCPLSLRLMYDPVVIESGQTFERMWIQKWFEEGNHTCPKTKMKLVC 315
++ + IP F CP+SL LM DPV++ +GQT+ER +IQ+W + GN TCPKT+ KL
Sbjct: 232 ESKKSDKLTIPVDFLCPVSLELMKDPVIVATGQTYERAYIQRWIDCGNLTCPKTQQKLEN 291
Query: 316 QSLTPNTAMKDLISKWC 332
+LTPN ++ LIS+WC
Sbjct: 292 FTLTPNYVLRSLISRWC 308
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| O23225 | PUB5_ARATH | 6, ., 3, ., 2, ., - | 0.3810 | 0.9169 | 0.9066 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 6.3.2 | 0.691 |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
| Your Input: |  |
 |
 |
 |
 |
 |
 |
 |
 |
||
 | eugene3.00570170 | hypothetical protein (760 aa) | |||||||||
(Populus trichocarpa) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 710 | |||
| smart00504 | 63 | smart00504, Ubox, Modified RING finger domain | 3e-20 | |
| pfam04564 | 73 | pfam04564, U-box, U-box domain | 2e-16 | |
| cd00020 | 120 | cd00020, ARM, Armadillo/beta-catenin-like repeats | 3e-06 | |
| cd00020 | 120 | cd00020, ARM, Armadillo/beta-catenin-like repeats | 3e-04 |
| >gnl|CDD|128780 smart00504, Ubox, Modified RING finger domain | Back alignment and domain information |
|---|
Score = 84.6 bits (210), Expect = 3e-20
Identities = 29/63 (46%), Positives = 39/63 (61%), Gaps = 1/63 (1%)
Query: 269 FKCPLSLRLMYDPVVIESGQTFERMWIQKWFEEGNHTCPKTKMKLVCQSLTPNTAMKDLI 328
F CP+SL +M DPV++ SGQT+ER I+KW + T P T L + L PN A+K I
Sbjct: 2 FLCPISLEVMKDPVILPSGQTYERSAIEKWLLS-HGTDPVTGQPLTHEDLIPNLALKSAI 60
Query: 329 SKW 331
+W
Sbjct: 61 QEW 63
|
Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination. Length = 63 |
| >gnl|CDD|203049 pfam04564, U-box, U-box domain | Back alignment and domain information |
|---|
Score = 74.3 bits (183), Expect = 2e-16
Identities = 25/67 (37%), Positives = 38/67 (56%)
Query: 265 IPEVFKCPLSLRLMYDPVVIESGQTFERMWIQKWFEEGNHTCPKTKMKLVCQSLTPNTAM 324
IP+ F P++L LM DPV++ SG T++R I++ + T P T+ L L PN +
Sbjct: 1 IPDEFLDPITLELMKDPVILPSGITYDRSTIERHLLSVDPTDPFTREPLTHDQLIPNLEL 60
Query: 325 KDLISKW 331
K+ I W
Sbjct: 61 KEKIDAW 67
|
This domain is related to the Ring finger pfam00097 but lacks the zinc binding residues. Length = 73 |
| >gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats | Back alignment and domain information |
|---|
Score = 46.5 bits (111), Expect = 3e-06
Identities = 32/120 (26%), Positives = 59/120 (49%), Gaps = 5/120 (4%)
Query: 502 KIVASGALASILNMLDSPNGKFQELAIKILHNLSSDVDIQ-SHIAPSEFLPKLVPFLKDA 560
++ +G L +++++L S + Q A L NLS+ + + + LP LV LK
Sbjct: 2 AVIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSE 61
Query: 561 TLAVSCLVI--LKNMC-NTEHARVCVVETSGCLPSVAELLEIGSEEDQEHAVAILLCLCS 617
V + L+N+ E ++ V+E +G +P + LL+ +E+ Q++A L L S
Sbjct: 62 DEEVVKAALWALRNLAAGPEDNKLIVLE-AGGVPKLVNLLDSSNEDIQKNATGALSNLAS 120
|
An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. Length = 120 |
| >gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats | Back alignment and domain information |
|---|
Score = 40.8 bits (96), Expect = 3e-04
Identities = 21/80 (26%), Positives = 36/80 (45%), Gaps = 1/80 (1%)
Query: 583 VVETSGCLPSVAELLEIGSEEDQEHAVAILLCLCSQRDQYCKLVMNEGVIPSLVKISVYG 642
V +G LP++ LL E Q A L L + + + V+ G +P+LV++
Sbjct: 2 AVIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSE 61
Query: 643 NDKAKVSALE-LRRLLRDVA 661
+++ +AL LR L
Sbjct: 62 DEEVVKAALWALRNLAAGPE 81
|
An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. Length = 120 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 710 | |||
| PLN03200 | 2102 | cellulose synthase-interactive protein; Provisiona | 99.94 | |
| KOG4224 | 550 | consensus Armadillo repeat protein VAC8 required f | 99.92 | |
| PLN03200 | 2102 | cellulose synthase-interactive protein; Provisiona | 99.91 | |
| KOG4224 | 550 | consensus Armadillo repeat protein VAC8 required f | 99.88 | |
| KOG0166 | 514 | consensus Karyopherin (importin) alpha [Intracellu | 99.87 | |
| PF04564 | 73 | U-box: U-box domain; InterPro: IPR003613 Quality c | 99.86 | |
| KOG0166 | 514 | consensus Karyopherin (importin) alpha [Intracellu | 99.8 | |
| COG5064 | 526 | SRP1 Karyopherin (importin) alpha [Intracellular t | 99.78 | |
| PF05804 | 708 | KAP: Kinesin-associated protein (KAP) | 99.76 | |
| COG5064 | 526 | SRP1 Karyopherin (importin) alpha [Intracellular t | 99.72 | |
| smart00504 | 63 | Ubox Modified RING finger domain. Modified RING fi | 99.67 | |
| PF05804 | 708 | KAP: Kinesin-associated protein (KAP) | 99.67 | |
| KOG2122 | 2195 | consensus Beta-catenin-binding protein APC, contai | 99.54 | |
| KOG4199 | 461 | consensus Uncharacterized conserved protein [Funct | 99.52 | |
| KOG4199 | 461 | consensus Uncharacterized conserved protein [Funct | 99.48 | |
| KOG1048 | 717 | consensus Neural adherens junction protein Plakoph | 99.46 | |
| PF04826 | 254 | Arm_2: Armadillo-like; InterPro: IPR006911 This en | 99.35 | |
| KOG1048 | 717 | consensus Neural adherens junction protein Plakoph | 99.26 | |
| PF04826 | 254 | Arm_2: Armadillo-like; InterPro: IPR006911 This en | 99.24 | |
| PF10508 | 503 | Proteasom_PSMB: Proteasome non-ATPase 26S subunit; | 99.11 | |
| cd00020 | 120 | ARM Armadillo/beta-catenin-like repeats. An approx | 99.11 | |
| KOG1222 | 791 | consensus Kinesin associated protein KAP [Intracel | 99.09 | |
| cd00020 | 120 | ARM Armadillo/beta-catenin-like repeats. An approx | 99.03 | |
| PLN03208 | 193 | E3 ubiquitin-protein ligase RMA2; Provisional | 99.02 | |
| PF15227 | 42 | zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: | 99.01 | |
| KOG2122 | 2195 | consensus Beta-catenin-binding protein APC, contai | 99.0 | |
| KOG1222 | 791 | consensus Kinesin associated protein KAP [Intracel | 98.98 | |
| KOG4642 | 284 | consensus Chaperone-dependent E3 ubiquitin protein | 98.91 | |
| TIGR00599 | 397 | rad18 DNA repair protein rad18. This family is bas | 98.88 | |
| PF11789 | 57 | zf-Nse: Zinc-finger of the MIZ type in Nse subunit | 98.77 | |
| PF10508 | 503 | Proteasom_PSMB: Proteasome non-ATPase 26S subunit; | 98.67 | |
| PF03224 | 312 | V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004 | 98.63 | |
| PF13923 | 39 | zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); | 98.61 | |
| PF03224 | 312 | V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004 | 98.57 | |
| KOG4500 | 604 | consensus Rho/Rac GTPase guanine nucleotide exchan | 98.55 | |
| PF13445 | 43 | zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A. | 98.49 | |
| KOG0168 | 1051 | consensus Putative ubiquitin fusion degradation pr | 98.46 | |
| PF14835 | 65 | zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM | 98.42 | |
| KOG4500 | 604 | consensus Rho/Rac GTPase guanine nucleotide exchan | 98.4 | |
| cd00256 | 429 | VATPase_H VATPase_H, regulatory vacuolar ATP synth | 98.39 | |
| PF00097 | 41 | zf-C3HC4: Zinc finger, C3HC4 type (RING finger); I | 98.36 | |
| PRK09687 | 280 | putative lyase; Provisional | 98.36 | |
| PRK09687 | 280 | putative lyase; Provisional | 98.31 | |
| KOG0823 | 230 | consensus Predicted E3 ubiquitin ligase [Posttrans | 98.21 | |
| PHA02929 | 238 | N1R/p28-like protein; Provisional | 98.19 | |
| PF13920 | 50 | zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); | 98.19 | |
| KOG0287 | 442 | consensus Postreplication repair protein RAD18 [Re | 98.17 | |
| KOG2177 | 386 | consensus Predicted E3 ubiquitin ligase [Posttrans | 98.15 | |
| KOG2042 | 943 | consensus Ubiquitin fusion degradation protein-2 [ | 98.13 | |
| COG5113 | 929 | UFD2 Ubiquitin fusion degradation protein 2 [Postt | 98.1 | |
| cd00162 | 45 | RING RING-finger (Really Interesting New Gene) dom | 98.08 | |
| KOG0168 | 1051 | consensus Putative ubiquitin fusion degradation pr | 98.06 | |
| KOG0320 | 187 | consensus Predicted E3 ubiquitin ligase [Posttrans | 98.0 | |
| KOG2160 | 342 | consensus Armadillo/beta-catenin-like repeat-conta | 98.0 | |
| PF13639 | 44 | zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C | 97.97 | |
| KOG2160 | 342 | consensus Armadillo/beta-catenin-like repeat-conta | 97.96 | |
| smart00184 | 39 | RING Ring finger. E3 ubiquitin-protein ligase acti | 97.95 | |
| COG5432 | 391 | RAD18 RING-finger-containing E3 ubiquitin ligase [ | 97.92 | |
| PRK13800 | 897 | putative oxidoreductase/HEAT repeat-containing pro | 97.86 | |
| PF00514 | 41 | Arm: Armadillo/beta-catenin-like repeat; InterPro: | 97.8 | |
| KOG4646 | 173 | consensus Uncharacterized conserved protein, conta | 97.79 | |
| PRK13800 | 897 | putative oxidoreductase/HEAT repeat-containing pro | 97.78 | |
| PF05536 | 543 | Neurochondrin: Neurochondrin | 97.78 | |
| cd00256 | 429 | VATPase_H VATPase_H, regulatory vacuolar ATP synth | 97.74 | |
| TIGR00570 | 309 | cdk7 CDK-activating kinase assembly factor MAT1. A | 97.73 | |
| KOG0311 | 381 | consensus Predicted E3 ubiquitin ligase [Posttrans | 97.72 | |
| PHA02926 | 242 | zinc finger-like protein; Provisional | 97.71 | |
| KOG0317 | 293 | consensus Predicted E3 ubiquitin ligase, integral | 97.71 | |
| KOG4646 | 173 | consensus Uncharacterized conserved protein, conta | 97.65 | |
| KOG2973 | 353 | consensus Uncharacterized conserved protein [Funct | 97.61 | |
| KOG0946 | 970 | consensus ER-Golgi vesicle-tethering protein p115 | 97.6 | |
| PF01602 | 526 | Adaptin_N: Adaptin N terminal region; InterPro: IP | 97.52 | |
| PF00514 | 41 | Arm: Armadillo/beta-catenin-like repeat; InterPro: | 97.5 | |
| KOG0978 | 698 | consensus E3 ubiquitin ligase involved in syntaxin | 97.5 | |
| KOG2973 | 353 | consensus Uncharacterized conserved protein [Funct | 97.49 | |
| KOG0297 | 391 | consensus TNF receptor-associated factor [Signal t | 97.48 | |
| PF01602 | 526 | Adaptin_N: Adaptin N terminal region; InterPro: IP | 97.48 | |
| PF14664 | 371 | RICTOR_N: Rapamycin-insensitive companion of mTOR, | 97.45 | |
| KOG2759 | 442 | consensus Vacuolar H+-ATPase V1 sector, subunit H | 97.44 | |
| KOG1789 | 2235 | consensus Endocytosis protein RME-8, contains DnaJ | 97.41 | |
| KOG3678 | 832 | consensus SARM protein (with sterile alpha and arm | 97.41 | |
| PF14634 | 44 | zf-RING_5: zinc-RING finger domain | 97.4 | |
| PF05536 | 543 | Neurochondrin: Neurochondrin | 97.37 | |
| KOG4159 | 398 | consensus Predicted E3 ubiquitin ligase [Posttrans | 97.35 | |
| KOG0946 | 970 | consensus ER-Golgi vesicle-tethering protein p115 | 97.34 | |
| KOG2164 | 513 | consensus Predicted E3 ubiquitin ligase [Posttrans | 97.27 | |
| KOG2660 | 331 | consensus Locus-specific chromosome binding protei | 97.14 | |
| PF12678 | 73 | zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 | 97.12 | |
| COG5574 | 271 | PEX10 RING-finger-containing E3 ubiquitin ligase [ | 97.1 | |
| COG5222 | 427 | Uncharacterized conserved protein, contains RING Z | 97.09 | |
| smart00185 | 41 | ARM Armadillo/beta-catenin-like repeats. Approx. 4 | 97.07 | |
| KOG1293 | 678 | consensus Proteins containing armadillo/beta-caten | 96.99 | |
| KOG1293 | 678 | consensus Proteins containing armadillo/beta-caten | 96.87 | |
| KOG0289 | 506 | consensus mRNA splicing factor [General function p | 96.76 | |
| KOG2734 | 536 | consensus Uncharacterized conserved protein [Funct | 96.72 | |
| KOG3678 | 832 | consensus SARM protein (with sterile alpha and arm | 96.7 | |
| PF11841 | 160 | DUF3361: Domain of unknown function (DUF3361) | 96.61 | |
| PF12861 | 85 | zf-Apc11: Anaphase-promoting complex subunit 11 RI | 96.54 | |
| KOG2171 | 1075 | consensus Karyopherin (importin) beta 3 [Nuclear s | 96.52 | |
| PTZ00429 | 746 | beta-adaptin; Provisional | 96.46 | |
| smart00185 | 41 | ARM Armadillo/beta-catenin-like repeats. Approx. 4 | 96.33 | |
| KOG2759 | 442 | consensus Vacuolar H+-ATPase V1 sector, subunit H | 96.32 | |
| COG1413 | 335 | FOG: HEAT repeat [Energy production and conversion | 96.25 | |
| PF10165 | 446 | Ric8: Guanine nucleotide exchange factor synembryn | 96.24 | |
| COG5369 | 743 | Uncharacterized conserved protein [Function unknow | 96.22 | |
| TIGR02270 | 410 | conserved hypothetical protein. Members are found | 96.19 | |
| PF12348 | 228 | CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi | 96.19 | |
| PTZ00429 | 746 | beta-adaptin; Provisional | 96.15 | |
| KOG0824 | 324 | consensus Predicted E3 ubiquitin ligase [Posttrans | 96.14 | |
| PF09759 | 102 | Atx10homo_assoc: Spinocerebellar ataxia type 10 pr | 96.13 | |
| KOG2171 | 1075 | consensus Karyopherin (importin) beta 3 [Nuclear s | 96.11 | |
| PF13646 | 88 | HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I | 96.01 | |
| PF14664 | 371 | RICTOR_N: Rapamycin-insensitive companion of mTOR, | 95.91 | |
| PF10165 | 446 | Ric8: Guanine nucleotide exchange factor synembryn | 95.77 | |
| PF13646 | 88 | HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I | 95.74 | |
| KOG0802 | 543 | consensus E3 ubiquitin ligase [Posttranslational m | 95.69 | |
| KOG1813 | 313 | consensus Predicted E3 ubiquitin ligase [Posttrans | 95.66 | |
| PF12348 | 228 | CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi | 95.61 | |
| KOG4628 | 348 | consensus Predicted E3 ubiquitin ligase [Posttrans | 95.46 | |
| PF04641 | 260 | Rtf2: Rtf2 RING-finger | 95.46 | |
| TIGR02270 | 410 | conserved hypothetical protein. Members are found | 95.28 | |
| KOG3039 | 303 | consensus Uncharacterized conserved protein [Funct | 95.18 | |
| KOG0826 | 357 | consensus Predicted E3 ubiquitin ligase involved i | 95.16 | |
| KOG2879 | 298 | consensus Predicted E3 ubiquitin ligase [Posttrans | 95.08 | |
| KOG0212 | 675 | consensus Uncharacterized conserved protein [Funct | 95.01 | |
| PF04063 | 192 | DUF383: Domain of unknown function (DUF383); Inter | 94.88 | |
| KOG3039 | 303 | consensus Uncharacterized conserved protein [Funct | 94.85 | |
| KOG1242 | 569 | consensus Protein containing adaptin N-terminal re | 94.84 | |
| KOG1002 | 791 | consensus Nucleotide excision repair protein RAD16 | 94.78 | |
| KOG0212 | 675 | consensus Uncharacterized conserved protein [Funct | 94.77 | |
| COG1413 | 335 | FOG: HEAT repeat [Energy production and conversion | 94.41 | |
| COG5152 | 259 | Uncharacterized conserved protein, contains RING a | 94.27 | |
| KOG1789 | 2235 | consensus Endocytosis protein RME-8, contains DnaJ | 94.26 | |
| PF11841 | 160 | DUF3361: Domain of unknown function (DUF3361) | 94.14 | |
| KOG4413 | 524 | consensus 26S proteasome regulatory complex, subun | 94.12 | |
| KOG4367 | 699 | consensus Predicted Zn-finger protein [Function un | 94.1 | |
| KOG3036 | 293 | consensus Protein involved in cell differentiation | 94.1 | |
| KOG2979 | 262 | consensus Protein involved in DNA repair [General | 94.06 | |
| KOG2734 | 536 | consensus Uncharacterized conserved protein [Funct | 94.0 | |
| KOG4413 | 524 | consensus 26S proteasome regulatory complex, subun | 93.93 | |
| KOG1242 | 569 | consensus Protein containing adaptin N-terminal re | 93.88 | |
| COG5240 | 898 | SEC21 Vesicle coat complex COPI, gamma subunit [In | 93.64 | |
| PF06371 | 187 | Drf_GBD: Diaphanous GTPase-binding Domain; InterPr | 93.6 | |
| COG5243 | 491 | HRD1 HRD ubiquitin ligase complex, ER membrane com | 93.57 | |
| COG5540 | 374 | RING-finger-containing ubiquitin ligase [Posttrans | 93.41 | |
| KOG1517 | 1387 | consensus Guanine nucleotide binding protein MIP1 | 93.32 | |
| PF13513 | 55 | HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O | 93.22 | |
| KOG0804 | 493 | consensus Cytoplasmic Zn-finger protein BRAP2 (BRC | 92.69 | |
| COG5369 | 743 | Uncharacterized conserved protein [Function unknow | 92.34 | |
| KOG1517 | 1387 | consensus Guanine nucleotide binding protein MIP1 | 92.31 | |
| PF12031 | 257 | DUF3518: Domain of unknown function (DUF3518); Int | 92.22 | |
| PF13513 | 55 | HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O | 91.91 | |
| KOG1645 | 463 | consensus RING-finger-containing E3 ubiquitin liga | 91.91 | |
| KOG2259 | 823 | consensus Uncharacterized conserved protein [Funct | 91.78 | |
| KOG1248 | 1176 | consensus Uncharacterized conserved protein [Funct | 91.74 | |
| KOG3113 | 293 | consensus Uncharacterized conserved protein [Funct | 91.73 | |
| KOG3036 | 293 | consensus Protein involved in cell differentiation | 91.56 | |
| KOG0883 | 518 | consensus Cyclophilin type, U box-containing pepti | 91.52 | |
| KOG2999 | 713 | consensus Regulator of Rac1, required for phagocyt | 91.41 | |
| KOG4151 | 748 | consensus Myosin assembly protein/sexual cycle pro | 91.35 | |
| KOG2999 | 713 | consensus Regulator of Rac1, required for phagocyt | 91.32 | |
| PF12755 | 97 | Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region | 91.17 | |
| PF08045 | 257 | CDC14: Cell division control protein 14, SIN compo | 91.12 | |
| PF13764 | 802 | E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4 | 91.11 | |
| PF05659 | 147 | RPW8: Arabidopsis broad-spectrum mildew resistance | 91.05 | |
| PF04078 | 262 | Rcd1: Cell differentiation family, Rcd1-like ; Int | 90.85 | |
| KOG2817 | 394 | consensus Predicted E3 ubiquitin ligase [Posttrans | 90.85 | |
| KOG1062 | 866 | consensus Vesicle coat complex AP-1, gamma subunit | 90.61 | |
| PF09759 | 102 | Atx10homo_assoc: Spinocerebellar ataxia type 10 pr | 89.78 | |
| KOG2023 | 885 | consensus Nuclear transport receptor Karyopherin-b | 89.29 | |
| KOG1788 | 2799 | consensus Uncharacterized conserved protein [Funct | 88.75 | |
| KOG1241 | 859 | consensus Karyopherin (importin) beta 1 [Nuclear s | 88.11 | |
| PF04063 | 192 | DUF383: Domain of unknown function (DUF383); Inter | 88.09 | |
| PF02891 | 50 | zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR0041 | 88.06 | |
| KOG2023 | 885 | consensus Nuclear transport receptor Karyopherin-b | 88.03 | |
| KOG1824 | 1233 | consensus TATA-binding protein-interacting protein | 87.97 | |
| PF08569 | 335 | Mo25: Mo25-like; InterPro: IPR013878 Mo25-like pro | 87.78 | |
| smart00744 | 49 | RINGv The RING-variant domain is a C4HC3 zinc-fing | 87.65 | |
| KOG1062 | 866 | consensus Vesicle coat complex AP-1, gamma subunit | 87.3 | |
| COG5194 | 88 | APC11 Component of SCF ubiquitin ligase and anapha | 86.87 | |
| KOG2611 | 698 | consensus Neurochondrin/leucine-rich protein (Neur | 86.79 | |
| KOG3161 | 861 | consensus Predicted E3 ubiquitin ligase [Posttrans | 86.3 | |
| COG5181 | 975 | HSH155 U2 snRNP spliceosome subunit [RNA processin | 86.16 | |
| KOG1059 | 877 | consensus Vesicle coat complex AP-3, delta subunit | 85.94 | |
| KOG0213 | 1172 | consensus Splicing factor 3b, subunit 1 [RNA proce | 85.44 | |
| KOG3800 | 300 | consensus Predicted E3 ubiquitin ligase containing | 85.19 | |
| KOG1059 | 877 | consensus Vesicle coat complex AP-3, delta subunit | 85.16 | |
| KOG0213 | 1172 | consensus Splicing factor 3b, subunit 1 [RNA proce | 84.88 | |
| KOG1734 | 328 | consensus Predicted RING-containing E3 ubiquitin l | 84.56 | |
| KOG2611 | 698 | consensus Neurochondrin/leucine-rich protein (Neur | 84.28 | |
| PF05004 | 309 | IFRD: Interferon-related developmental regulator ( | 84.11 | |
| KOG1061 | 734 | consensus Vesicle coat complex AP-1/AP-2/AP-4, bet | 83.88 | |
| KOG1241 | 859 | consensus Karyopherin (importin) beta 1 [Nuclear s | 83.46 | |
| PF12755 | 97 | Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region | 83.46 | |
| KOG1078 | 865 | consensus Vesicle coat complex COPI, gamma subunit | 83.36 | |
| PF04078 | 262 | Rcd1: Cell differentiation family, Rcd1-like ; Int | 83.02 | |
| KOG1493 | 84 | consensus Anaphase-promoting complex (APC), subuni | 82.84 | |
| PF02985 | 31 | HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re | 82.69 | |
| KOG1061 | 734 | consensus Vesicle coat complex AP-1/AP-2/AP-4, bet | 82.62 | |
| PF11793 | 70 | FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A. | 82.29 | |
| PF14570 | 48 | zf-RING_4: RING/Ubox like zinc-binding domain; PDB | 82.28 | |
| KOG1824 | 1233 | consensus TATA-binding protein-interacting protein | 81.69 | |
| KOG1001 | 674 | consensus Helicase-like transcription factor HLTF/ | 81.68 | |
| COG5231 | 432 | VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Ene | 81.67 | |
| PF12031 | 257 | DUF3518: Domain of unknown function (DUF3518); Int | 81.54 | |
| PF11698 | 119 | V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011 | 81.5 | |
| KOG1039 | 344 | consensus Predicted E3 ubiquitin ligase [Posttrans | 81.23 | |
| PF05004 | 309 | IFRD: Interferon-related developmental regulator ( | 81.21 | |
| KOG0828 | 636 | consensus Predicted E3 ubiquitin ligase [Posttrans | 81.1 | |
| PF14668 | 73 | RICTOR_V: Rapamycin-insensitive companion of mTOR, | 81.07 | |
| PF11698 | 119 | V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011 | 80.94 | |
| KOG0396 | 389 | consensus Uncharacterized conserved protein [Funct | 80.88 | |
| PF02985 | 31 | HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re | 80.68 | |
| KOG0825 | 1134 | consensus PHD Zn-finger protein [General function | 80.64 |
| >PLN03200 cellulose synthase-interactive protein; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=5.9e-26 Score=280.13 Aligned_cols=270 Identities=18% Similarity=0.171 Sum_probs=237.7
Q ss_pred cc-hhhcCC--CHHHHHHHHHHHHHHHccCcccchhccc-CCcHHHHHHHhhccccCCCHHHHHHHHHHHHHHhccCCCC
Q 036199 386 DL-SRLTEL--NWDCQCKVIEDYETRLEHDNQVSHSLSS-TNFVEPLIRFLRDARDLHDSRAQRIGCRLLLAFVSKNRSG 461 (710)
Q Consensus 386 ~L-~~L~s~--~~e~q~~Al~~L~~Lak~~~~~r~~I~~-~G~I~~LV~lL~s~~~~~d~~~q~~A~~~L~nL~~~~~~k 461 (710)
+| ++|+++ +.+.|..|+.+|+.+++.++++|..|++ .|+||.|+.+|.+ ++..+|++|+.+|.+++.++.+|
T Consensus 17 ~Lve~L~s~~ss~~~~~~Al~~Lr~Lak~~~enR~~Ia~~aGaIP~LV~lL~s----g~~~vk~nAaaaL~nLS~~e~nk 92 (2102)
T PLN03200 17 QCIEQLRAKSSSPQEKELTTARLLELAKTREEARKAIGSHSQAMPLLVSLLRS----GTLGAKVNAAAVLGVLCKEEDLR 92 (2102)
T ss_pred HHHHHHHcccCCHHHHHHHHHHHHHHHhcChHHHHHHHHccCcHHHHHHHHcC----CCHHHHHHHHHHHHHHhcCHHHH
Confidence 44 788876 7788999999999999999999999986 8999999999987 68999999999999999988888
Q ss_pred CccccccchHHHHHHhccCcH--HHHHHHHHHHhccC---chhhHHHh-hhCcHHHHHHhhcCCC---HHHHHHHHHHHH
Q 036199 462 IPYLNEDLFSLLASFLHSAAA--TEETLAILVALSSY---AYFISKIV-ASGALASILNMLDSPN---GKFQELAIKILH 532 (710)
Q Consensus 462 ~~i~~~gaI~~LV~lL~s~~~--~~~Aa~~L~~Ls~~---~~nk~~I~-~~GaI~~LV~LL~~~~---~~~~~~A~~aL~ 532 (710)
..++..|+||+|+.+|++++. +++|+++|++|+.+ +.++..|+ ..|+||+|+.+|++++ ...++.|+.+|+
T Consensus 93 ~~Iv~~GaIppLV~LL~sGs~eaKe~AA~AL~sLS~~~~~D~~~~~I~v~~GaVp~Lv~lL~~gsk~d~~L~~~Av~AL~ 172 (2102)
T PLN03200 93 VKVLLGGCIPPLLSLLKSGSAEAQKAAAEAIYAVSSGGLSDHVGSKIFSTEGVVPSLWDQLQPGNKQDKVVEGLLTGALR 172 (2102)
T ss_pred HHHHHcCChHHHHHHHHCCCHHHHHHHHHHHHHHHcCcchhhhhhhhhhhcCChHHHHHHHhCCchhhHHHHHHHHHHHH
Confidence 888899999999999999875 47999999999976 55676655 6999999999999885 235677889999
Q ss_pred HhccCcccccc-cccccchhchHHhhcC--chHHHHHHHHHHHHhcC-cchHHHHHhhcCChHHHHHHhhcC-CHHHHHH
Q 036199 533 NLSSDVDIQSH-IAPSEFLPKLVPFLKD--ATLAVSCLVILKNMCNT-EHARVCVVETSGCLPSVAELLEIG-SEEDQEH 607 (710)
Q Consensus 533 nLs~~~en~~~-iv~aG~V~~Lv~lL~~--~~~~~~al~iL~nLa~~-~e~r~~i~~~~g~I~~Lv~lL~~~-s~~~ke~ 607 (710)
|||.+++|+.. ++++|+||.|+.+|.+ +..+..|+.+|.+++.+ ++++..+++ .|+||.|+++|+++ ++..|++
T Consensus 173 nLs~~~en~~~~IIeaGaVp~LV~LLsS~d~~lQ~eAa~aLa~Lass~ee~~~aVIe-aGaVP~LV~LL~sg~~~~VRE~ 251 (2102)
T PLN03200 173 NLCGSTDGFWSATLEAGGVDILVKLLSSGNSDAQANAASLLARLMMAFESSISKVLD-AGAVKQLLKLLGQGNEVSVRAE 251 (2102)
T ss_pred HHhcCccchHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCChHHHHHHHH-CCCHHHHHHHHccCCChHHHHH
Confidence 99999999865 5899999999999965 46799999999888875 779999998 89999999999875 5689999
Q ss_pred HHHHHHHHhcCChHHHHHHHhCCchHHHHHHhhcCC---------HHHHHHHHHHHHHhhhc
Q 036199 608 AVAILLCLCSQRDQYCKLVMNEGVIPSLVKISVYGN---------DKAKVSALELRRLLRDV 660 (710)
Q Consensus 608 A~~aL~~Lc~~~~~~~~~v~~~G~v~~Lv~L~~~gt---------~~~k~kA~~LL~~l~~~ 660 (710)
|+++|.+||.++++++..+++.|++|+|+.++...+ ...++.|.+.|..+...
T Consensus 252 AA~AL~nLAs~s~e~r~~Iv~aGgIp~LI~lL~sp~~e~~~~~~~~~Lqe~AvwALsNIcgg 313 (2102)
T PLN03200 252 AAGALEALSSQSKEAKQAIADAGGIPALINATVAPSKEFMQGEFAQALQENAMGALANICGG 313 (2102)
T ss_pred HHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHhCcchhhhccccchHHHHHHHHHHHHHhCC
Confidence 999999999999999999999999999999987544 33589999999987753
|
|
| >KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.92 E-value=8.4e-25 Score=224.71 Aligned_cols=268 Identities=20% Similarity=0.271 Sum_probs=244.1
Q ss_pred hcCCCHHHHHHHHHHHHHHHccCcccchhcccCCcHHHHHHHhhccccCCCHHHHHHHHHHHHHHhccCCCCCccccccc
Q 036199 390 LTELNWDCQCKVIEDYETRLEHDNQVSHSLSSTNFVEPLIRFLRDARDLHDSRAQRIGCRLLLAFVSKNRSGIPYLNEDL 469 (710)
Q Consensus 390 L~s~~~e~q~~Al~~L~~Lak~~~~~r~~I~~~G~I~~LV~lL~s~~~~~d~~~q~~A~~~L~nL~~~~~~k~~i~~~ga 469 (710)
..+...++||.++..|..|+-. +++|..|+..|++.++.++-++ .|..+|++++.+|+|+.+..+||...+..|+
T Consensus 135 mmtd~vevqcnaVgCitnLaT~-d~nk~kiA~sGaL~pltrLaks----kdirvqrnatgaLlnmThs~EnRr~LV~aG~ 209 (550)
T KOG4224|consen 135 MMTDGVEVQCNAVGCITNLATF-DSNKVKIARSGALEPLTRLAKS----KDIRVQRNATGALLNMTHSRENRRVLVHAGG 209 (550)
T ss_pred hcCCCcEEEeeehhhhhhhhcc-ccchhhhhhccchhhhHhhccc----chhhHHHHHHHHHHHhhhhhhhhhhhhccCC
Confidence 3345678899999999999987 7799999999999999996655 7899999999999999888888999999999
Q ss_pred hHHHHHHhccCcH--HHHHHHHHHHhccCchhhHHHhhhC--cHHHHHHhhcCCCHHHHHHHHHHHHHhccCcccccccc
Q 036199 470 FSLLASFLHSAAA--TEETLAILVALSSYAYFISKIVASG--ALASILNMLDSPNGKFQELAIKILHNLSSDVDIQSHIA 545 (710)
Q Consensus 470 I~~LV~lL~s~~~--~~~Aa~~L~~Ls~~~~nk~~I~~~G--aI~~LV~LL~~~~~~~~~~A~~aL~nLs~~~en~~~iv 545 (710)
+|.||.+|++++. +..+..++.+++.+..+|..++++| .||.||++++++++.++-.|.-||.||+.+.+....++
T Consensus 210 lpvLVsll~s~d~dvqyycttaisnIaVd~~~Rk~Laqaep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasdt~Yq~eiv 289 (550)
T KOG4224|consen 210 LPVLVSLLKSGDLDVQYYCTTAISNIAVDRRARKILAQAEPKLVPALVDLMDDGSDKVKCQAGLALRNLASDTEYQREIV 289 (550)
T ss_pred chhhhhhhccCChhHHHHHHHHhhhhhhhHHHHHHHHhcccchHHHHHHHHhCCChHHHHHHHHHHhhhcccchhhhHHH
Confidence 9999999999885 4799999999999999999999877 99999999999999999999999999999999999999
Q ss_pred cccchhchHHhhcCc--hHHHHHHHHHHHHhcCcchHHHHHhhcCChHHHHHHhhcCC-HHHHHHHHHHHHHHhcCChHH
Q 036199 546 PSEFLPKLVPFLKDA--TLAVSCLVILKNMCNTEHARVCVVETSGCLPSVAELLEIGS-EEDQEHAVAILLCLCSQRDQY 622 (710)
Q Consensus 546 ~aG~V~~Lv~lL~~~--~~~~~al~iL~nLa~~~e~r~~i~~~~g~I~~Lv~lL~~~s-~~~ke~A~~aL~~Lc~~~~~~ 622 (710)
++|++|.|+++|.++ .+.-..+..++|++-++-+..-|++ .|.+.+||++|+.++ .+.|-+|+.+|++|+.....+
T Consensus 290 ~ag~lP~lv~Llqs~~~plilasVaCIrnisihplNe~lI~d-agfl~pLVrlL~~~dnEeiqchAvstLrnLAasse~n 368 (550)
T KOG4224|consen 290 EAGSLPLLVELLQSPMGPLILASVACIRNISIHPLNEVLIAD-AGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAASSEHN 368 (550)
T ss_pred hcCCchHHHHHHhCcchhHHHHHHHHHhhcccccCcccceec-ccchhHHHHHHhcCCchhhhhhHHHHHHHHhhhhhhh
Confidence 999999999999764 4566778899999999999989998 899999999999864 558999999999999988889
Q ss_pred HHHHHhCCchHHHHHHhhcCCHHHHHHHHHHHHHhhhccCC
Q 036199 623 CKLVMNEGVIPSLVKISVYGNDKAKVSALELRRLLRDVAYS 663 (710)
Q Consensus 623 ~~~v~~~G~v~~Lv~L~~~gt~~~k~kA~~LL~~l~~~~~~ 663 (710)
+..+.+.|++|.|.+|+.+|.-..+..-...+..|.-.+..
T Consensus 369 ~~~i~esgAi~kl~eL~lD~pvsvqseisac~a~Lal~d~~ 409 (550)
T KOG4224|consen 369 VSVIRESGAIPKLIELLLDGPVSVQSEISACIAQLALNDND 409 (550)
T ss_pred hHHHhhcCchHHHHHHHhcCChhHHHHHHHHHHHHHhcccc
Confidence 99999999999999999999999998888888887766544
|
|
| >PLN03200 cellulose synthase-interactive protein; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.2e-23 Score=257.51 Aligned_cols=272 Identities=18% Similarity=0.174 Sum_probs=235.0
Q ss_pred hhhcCCCHHHHHHHHHHHHHHHccCcccchhcccCCcHHHHHHHhhccccCCCHHHHHHHHHHHHHHhccCCCC-Ccccc
Q 036199 388 SRLTELNWDCQCKVIEDYETRLEHDNQVSHSLSSTNFVEPLIRFLRDARDLHDSRAQRIGCRLLLAFVSKNRSG-IPYLN 466 (710)
Q Consensus 388 ~~L~s~~~e~q~~Al~~L~~Lak~~~~~r~~I~~~G~I~~LV~lL~s~~~~~d~~~q~~A~~~L~nL~~~~~~k-~~i~~ 466 (710)
..|.+++.+.|..|++.|+.+++.+++++..|++.|+||.|+++|.+ ++.++|++|+++|.|++.++.+. ..+.+
T Consensus 453 ~LL~s~s~~iQ~~A~~~L~nLa~~ndenr~aIieaGaIP~LV~LL~s----~~~~iqeeAawAL~NLa~~~~qir~iV~~ 528 (2102)
T PLN03200 453 SLLGLSSEQQQEYAVALLAILTDEVDESKWAITAAGGIPPLVQLLET----GSQKAKEDSATVLWNLCCHSEDIRACVES 528 (2102)
T ss_pred HHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcC----CCHHHHHHHHHHHHHHhCCcHHHHHHHHH
Confidence 77888889999999999999999999999999999999999999987 78999999999999998766444 44447
Q ss_pred ccchHHHHHHhccCcHH--HHHHHHHHHhccCchhh-------------------------------------HH-Hhhh
Q 036199 467 EDLFSLLASFLHSAAAT--EETLAILVALSSYAYFI-------------------------------------SK-IVAS 506 (710)
Q Consensus 467 ~gaI~~LV~lL~s~~~~--~~Aa~~L~~Ls~~~~nk-------------------------------------~~-I~~~ 506 (710)
.|+|++|+++|++++.+ +.|+++|.+|+...++. .. +...
T Consensus 529 aGAIppLV~LL~sgd~~~q~~Aa~AL~nLi~~~d~~~I~~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ 608 (2102)
T PLN03200 529 AGAVPALLWLLKNGGPKGQEIAAKTLTKLVRTADAATISQLTALLLGDLPESKVHVLDVLGHVLSVASLEDLVREGSAAN 608 (2102)
T ss_pred CCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhccchhHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcchhHHHHHhhhcc
Confidence 89999999999998764 69999999996322211 11 1136
Q ss_pred CcHHHHHHhhcCCCHHHHHHHHHHHHHhcc-CcccccccccccchhchHHhhcC--chHHHHHHHHHHHHhc--CcchHH
Q 036199 507 GALASILNMLDSPNGKFQELAIKILHNLSS-DVDIQSHIAPSEFLPKLVPFLKD--ATLAVSCLVILKNMCN--TEHARV 581 (710)
Q Consensus 507 GaI~~LV~LL~~~~~~~~~~A~~aL~nLs~-~~en~~~iv~aG~V~~Lv~lL~~--~~~~~~al~iL~nLa~--~~e~r~ 581 (710)
|+|+.|+++|.++++..++.|+++|.|++. +++++..++.+|+||+|+.+|.+ .+....|+++|.+|+. .++.+.
T Consensus 609 ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a~~~d~~~avv~agaIpPLV~LLss~~~~v~keAA~AL~nL~~~~~~~q~~ 688 (2102)
T PLN03200 609 DALRTLIQLLSSSKEETQEKAASVLADIFSSRQDLCESLATDEIINPCIKLLTNNTEAVATQSARALAALSRSIKENRKV 688 (2102)
T ss_pred ccHHHHHHHHcCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCChHHHHHHHHHHHHHHhCCCHHHHH
Confidence 899999999999999999999999999997 56778889999999999999965 4678999999999996 445567
Q ss_pred HHHhhcCChHHHHHHhhcCCHHHHHHHHHHHHHHhcCChHHHHHHHhCCchHHHHHHhhcCCHHHHHHHHHHHHHhhhcc
Q 036199 582 CVVETSGCLPSVAELLEIGSEEDQEHAVAILLCLCSQRDQYCKLVMNEGVIPSLVKISVYGNDKAKVSALELRRLLRDVA 661 (710)
Q Consensus 582 ~i~~~~g~I~~Lv~lL~~~s~~~ke~A~~aL~~Lc~~~~~~~~~v~~~G~v~~Lv~L~~~gt~~~k~kA~~LL~~l~~~~ 661 (710)
.+++ .|+|++|+++|...+...++.|+.+|.+++... +.+..+.++|++++|+.++++|+++.|+.|.+.|..|.++.
T Consensus 689 ~~v~-~GaV~pL~~LL~~~d~~v~e~Al~ALanLl~~~-e~~~ei~~~~~I~~Lv~lLr~G~~~~k~~Aa~AL~~L~~~~ 766 (2102)
T PLN03200 689 SYAA-EDAIKPLIKLAKSSSIEVAEQAVCALANLLSDP-EVAAEALAEDIILPLTRVLREGTLEGKRNAARALAQLLKHF 766 (2102)
T ss_pred HHHH-cCCHHHHHHHHhCCChHHHHHHHHHHHHHHcCc-hHHHHHHhcCcHHHHHHHHHhCChHHHHHHHHHHHHHHhCC
Confidence 7777 899999999999999999999999999999998 57788889999999999999999999999999888777666
Q ss_pred CCcc
Q 036199 662 YSVE 665 (710)
Q Consensus 662 ~~~~ 665 (710)
.-++
T Consensus 767 ~~~~ 770 (2102)
T PLN03200 767 PVDD 770 (2102)
T ss_pred ChhH
Confidence 5443
|
|
| >KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.88 E-value=5.5e-22 Score=204.11 Aligned_cols=261 Identities=20% Similarity=0.245 Sum_probs=234.8
Q ss_pred CCHHHHHHHHHHHHHHHccCcccchhcccCCcHHHHHHHhhccccCCCHHHHHHHHHHHHHHhccCCCCCcccccc--ch
Q 036199 393 LNWDCQCKVIEDYETRLEHDNQVSHSLSSTNFVEPLIRFLRDARDLHDSRAQRIGCRLLLAFVSKNRSGIPYLNED--LF 470 (710)
Q Consensus 393 ~~~e~q~~Al~~L~~Lak~~~~~r~~I~~~G~I~~LV~lL~s~~~~~d~~~q~~A~~~L~nL~~~~~~k~~i~~~g--aI 470 (710)
.+..+|.-+.+.|..+. ...+||..++..|++|.||.+|++ +|..+|..+++++.|+.-+..+|...++.| .+
T Consensus 179 kdirvqrnatgaLlnmT-hs~EnRr~LV~aG~lpvLVsll~s----~d~dvqyycttaisnIaVd~~~Rk~Laqaep~lv 253 (550)
T KOG4224|consen 179 KDIRVQRNATGALLNMT-HSRENRRVLVHAGGLPVLVSLLKS----GDLDVQYYCTTAISNIAVDRRARKILAQAEPKLV 253 (550)
T ss_pred chhhHHHHHHHHHHHhh-hhhhhhhhhhccCCchhhhhhhcc----CChhHHHHHHHHhhhhhhhHHHHHHHHhcccchH
Confidence 35677888998888776 457799999999999999999998 899999999999999988777777777766 99
Q ss_pred HHHHHHhccCcHH--HHHHHHHHHhccCchhhHHHhhhCcHHHHHHhhcCCCHHHHHHHHHHHHHhccCccccccccccc
Q 036199 471 SLLASFLHSAAAT--EETLAILVALSSYAYFISKIVASGALASILNMLDSPNGKFQELAIKILHNLSSDVDIQSHIAPSE 548 (710)
Q Consensus 471 ~~LV~lL~s~~~~--~~Aa~~L~~Ls~~~~nk~~I~~~GaI~~LV~LL~~~~~~~~~~A~~aL~nLs~~~en~~~iv~aG 548 (710)
|.||++.++++.+ -.|.-+|.+|+.+.++...|+++|++|.+|++|+++.....-....++.|++.++-|-..|+++|
T Consensus 254 ~~Lv~Lmd~~s~kvkcqA~lALrnlasdt~Yq~eiv~ag~lP~lv~Llqs~~~plilasVaCIrnisihplNe~lI~dag 333 (550)
T KOG4224|consen 254 PALVDLMDDGSDKVKCQAGLALRNLASDTEYQREIVEAGSLPLLVELLQSPMGPLILASVACIRNISIHPLNEVLIADAG 333 (550)
T ss_pred HHHHHHHhCCChHHHHHHHHHHhhhcccchhhhHHHhcCCchHHHHHHhCcchhHHHHHHHHHhhcccccCcccceeccc
Confidence 9999999999875 37888899999999999999999999999999998887777788899999999999999999999
Q ss_pred chhchHHhhc---CchHHHHHHHHHHHHhc-CcchHHHHHhhcCChHHHHHHhhcCCHHHHHHHHHHHHHHhcCChHHHH
Q 036199 549 FLPKLVPFLK---DATLAVSCLVILKNMCN-TEHARVCVVETSGCLPSVAELLEIGSEEDQEHAVAILLCLCSQRDQYCK 624 (710)
Q Consensus 549 ~V~~Lv~lL~---~~~~~~~al~iL~nLa~-~~e~r~~i~~~~g~I~~Lv~lL~~~s~~~ke~A~~aL~~Lc~~~~~~~~ 624 (710)
.+.+||++|. +++++-.|..+|+|||. .+.++..|.+ .|+||.+.+++..+.-..|+...+++..|+.++ ..+.
T Consensus 334 fl~pLVrlL~~~dnEeiqchAvstLrnLAasse~n~~~i~e-sgAi~kl~eL~lD~pvsvqseisac~a~Lal~d-~~k~ 411 (550)
T KOG4224|consen 334 FLRPLVRLLRAGDNEEIQCHAVSTLRNLAASSEHNVSVIRE-SGAIPKLIELLLDGPVSVQSEISACIAQLALND-NDKE 411 (550)
T ss_pred chhHHHHHHhcCCchhhhhhHHHHHHHHhhhhhhhhHHHhh-cCchHHHHHHHhcCChhHHHHHHHHHHHHHhcc-ccHH
Confidence 9999999994 35689999999999998 7888999998 899999999999999999999999999998887 6678
Q ss_pred HHHhCCchHHHHHHhhcCCHHHHHHHHHHHHHhhhc
Q 036199 625 LVMNEGVIPSLVKISVYGNDKAKVSALELRRLLRDV 660 (710)
Q Consensus 625 ~v~~~G~v~~Lv~L~~~gt~~~k~kA~~LL~~l~~~ 660 (710)
.+.+.|++|.|+.+..+.+..++.+|...|-.|...
T Consensus 412 ~lld~gi~~iLIp~t~s~s~Ev~gNaAaAL~Nlss~ 447 (550)
T KOG4224|consen 412 ALLDSGIIPILIPWTGSESEEVRGNAAAALINLSSD 447 (550)
T ss_pred HHhhcCCcceeecccCccchhhcccHHHHHHhhhhh
Confidence 899999999999999999999999999988877654
|
|
| >KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.87 E-value=4.7e-21 Score=210.17 Aligned_cols=264 Identities=15% Similarity=0.142 Sum_probs=229.9
Q ss_pred CCCHHHHHHHHHHHHHHHccCcccchhcccCCcHHHHHHHhhccccCCCHHHHHHHHHHHHHHhccC-CCCCccccccch
Q 036199 392 ELNWDCQCKVIEDYETRLEHDNQVSHSLSSTNFVEPLIRFLRDARDLHDSRAQRIGCRLLLAFVSKN-RSGIPYLNEDLF 470 (710)
Q Consensus 392 s~~~e~q~~Al~~L~~Lak~~~~~r~~I~~~G~I~~LV~lL~s~~~~~d~~~q~~A~~~L~nL~~~~-~~k~~i~~~gaI 470 (710)
..++..|.+|+++|...+.+..+.-..+++.|++|.++.+|.+ .+..+++.|+.+|.|++.+. ..|..+++.|++
T Consensus 121 ~~~~~lq~eAAWaLTnIAsgtse~T~~vv~agavp~fi~Ll~s----~~~~v~eQavWALgNIagds~~~Rd~vl~~g~l 196 (514)
T KOG0166|consen 121 DDNPTLQFEAAWALTNIASGTSEQTKVVVDAGAVPIFIQLLSS----PSADVREQAVWALGNIAGDSPDCRDYVLSCGAL 196 (514)
T ss_pred CCChhHHHHHHHHHHHHhcCchhhccccccCCchHHHHHHhcC----CcHHHHHHHHHHHhccccCChHHHHHHHhhcch
Confidence 3457889999999999999999999999999999999999988 78999999999999998765 447777899999
Q ss_pred HHHHHHhccCcH---HHHHHHHHHHhccCchhhHHHh-hhCcHHHHHHhhcCCCHHHHHHHHHHHHHhccCc-ccccccc
Q 036199 471 SLLASFLHSAAA---TEETLAILVALSSYAYFISKIV-ASGALASILNMLDSPNGKFQELAIKILHNLSSDV-DIQSHIA 545 (710)
Q Consensus 471 ~~LV~lL~s~~~---~~~Aa~~L~~Ls~~~~nk~~I~-~~GaI~~LV~LL~~~~~~~~~~A~~aL~nLs~~~-en~~~iv 545 (710)
++|..++..... ..+++|+|.|||....--..+. -..++|.|..+|.+.|+++..+|++||.+|+..+ +....++
T Consensus 197 ~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~ne~iq~vi 276 (514)
T KOG0166|consen 197 DPLLRLLNKSDKLSMLRNATWTLSNLCRGKNPSPPFDVVAPILPALLRLLHSTDEEVLTDACWALSYLTDGSNEKIQMVI 276 (514)
T ss_pred HHHHHHhccccchHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHH
Confidence 999999987764 3799999999997764344433 3678999999999999999999999999999654 5556678
Q ss_pred cccchhchHHhhcC--chHHHHHHHHHHHHhcCcchH-HHHHhhcCChHHHHHHhh-cCCHHHHHHHHHHHHHHhcCChH
Q 036199 546 PSEFLPKLVPFLKD--ATLAVSCLVILKNMCNTEHAR-VCVVETSGCLPSVAELLE-IGSEEDQEHAVAILLCLCSQRDQ 621 (710)
Q Consensus 546 ~aG~V~~Lv~lL~~--~~~~~~al~iL~nLa~~~e~r-~~i~~~~g~I~~Lv~lL~-~~s~~~ke~A~~aL~~Lc~~~~~ 621 (710)
++|++|.|+++|.. +.++..|+.++.|++.+.+.. ..+.. .|+++.|..++. +.....++.|+|++.|++.++.+
T Consensus 277 ~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIvtG~d~QTq~vi~-~~~L~~l~~ll~~s~~~~ikkEAcW~iSNItAG~~~ 355 (514)
T KOG0166|consen 277 DAGVVPRLVDLLGHSSPKVVTPALRAIGNIVTGSDEQTQVVIN-SGALPVLSNLLSSSPKESIKKEACWTISNITAGNQE 355 (514)
T ss_pred HccchHHHHHHHcCCCcccccHHHhhccceeeccHHHHHHHHh-cChHHHHHHHhccCcchhHHHHHHHHHHHhhcCCHH
Confidence 99999999999954 457888999999999866555 45555 899999999998 45666899999999999999999
Q ss_pred HHHHHHhCCchHHHHHHhhcCCHHHHHHHHHHHHHhhhc
Q 036199 622 YCKLVMNEGVIPSLVKISVYGNDKAKVSALELRRLLRDV 660 (710)
Q Consensus 622 ~~~~v~~~G~v~~Lv~L~~~gt~~~k~kA~~LL~~l~~~ 660 (710)
+.+.++++|++|.|+.++.++..+.|+.|.|.+.++...
T Consensus 356 qiqaVida~l~p~Li~~l~~~ef~~rKEAawaIsN~ts~ 394 (514)
T KOG0166|consen 356 QIQAVIDANLIPVLINLLQTAEFDIRKEAAWAISNLTSS 394 (514)
T ss_pred HHHHHHHcccHHHHHHHHhccchHHHHHHHHHHHhhccc
Confidence 999999999999999999999999999999999976543
|
|
| >PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.5e-22 Score=169.12 Aligned_cols=72 Identities=42% Similarity=0.788 Sum_probs=63.8
Q ss_pred CCCcccccCCccccCCceecCCCCccchhhHHHHhhhCCCCCCCCCCccCCCCCcccHHHHHHHHHHHHHcC
Q 036199 265 IPEVFKCPLSLRLMYDPVVIESGQTFERMWIQKWFEEGNHTCPKTKMKLVCQSLTPNTAMKDLISKWCMNLC 336 (710)
Q Consensus 265 ~p~~f~CPI~~~~m~DPV~~~~G~ty~r~~I~~w~~~g~~~cP~t~~~l~~~~l~pN~~l~~~i~~w~~~~~ 336 (710)
+|++|+||||+++|+|||++++||||||.+|++|+..++.+||.|++++...+|+||..||+.|++|+.+|.
T Consensus 1 iP~~f~CpIt~~lM~dPVi~~~G~tyer~~I~~~l~~~~~~~P~t~~~l~~~~l~pn~~Lk~~I~~~~~~~~ 72 (73)
T PF04564_consen 1 IPDEFLCPITGELMRDPVILPSGHTYERSAIERWLEQNGGTDPFTRQPLSESDLIPNRALKSAIEEWCAENK 72 (73)
T ss_dssp SSGGGB-TTTSSB-SSEEEETTSEEEEHHHHHHHHCTTSSB-TTT-SB-SGGGSEE-HHHHHHHHHHHHHCT
T ss_pred CCcccCCcCcCcHhhCceeCCcCCEEcHHHHHHHHHcCCCCCCCCCCcCCcccceECHHHHHHHHHHHHHcc
Confidence 699999999999999999999999999999999999988999999999999999999999999999999885
|
Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A .... |
| >KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.80 E-value=4.4e-18 Score=186.98 Aligned_cols=268 Identities=17% Similarity=0.230 Sum_probs=222.9
Q ss_pred hhhcCCCHHHHHHHHHHHHHHHccCcccc-hhcccCCcHHHHHHHhhccccCCCHHHHHHHHHHHHHHhcc-CCCCCccc
Q 036199 388 SRLTELNWDCQCKVIEDYETRLEHDNQVS-HSLSSTNFVEPLIRFLRDARDLHDSRAQRIGCRLLLAFVSK-NRSGIPYL 465 (710)
Q Consensus 388 ~~L~s~~~e~q~~Al~~L~~Lak~~~~~r-~~I~~~G~I~~LV~lL~s~~~~~d~~~q~~A~~~L~nL~~~-~~~k~~i~ 465 (710)
..+.+.+...|..+...+|.+........ ..+...|.|+.+|.+|... .++..|..|+++|.|+++. ...-..++
T Consensus 73 ~~~~S~~~~~q~~a~~~~rkllS~~~~ppi~~vi~~G~v~~lV~~l~~~---~~~~lq~eAAWaLTnIAsgtse~T~~vv 149 (514)
T KOG0166|consen 73 AALYSDDPQQQLTATQAFRKLLSKERNPPIDEVIQSGVVPRLVEFLSRD---DNPTLQFEAAWALTNIASGTSEQTKVVV 149 (514)
T ss_pred HHHhCCCHHHHHHHHHHHHHHHccCCCCCHHHHHHcCcHHHHHHHHccC---CChhHHHHHHHHHHHHhcCchhhccccc
Confidence 56667788889999999987775433322 3334459999999999752 5689999999999999763 34445567
Q ss_pred cccchHHHHHHhccCcH--HHHHHHHHHHhcc-CchhhHHHhhhCcHHHHHHhhcCCCH-HHHHHHHHHHHHhccCcccc
Q 036199 466 NEDLFSLLASFLHSAAA--TEETLAILVALSS-YAYFISKIVASGALASILNMLDSPNG-KFQELAIKILHNLSSDVDIQ 541 (710)
Q Consensus 466 ~~gaI~~LV~lL~s~~~--~~~Aa~~L~~Ls~-~~~nk~~I~~~GaI~~LV~LL~~~~~-~~~~~A~~aL~nLs~~~en~ 541 (710)
+.|++|.++.+|.+++. .+.|+|+|.|++. .+..|..+...|++++|+.++...+. .....++++|.|||.+..--
T Consensus 150 ~agavp~fi~Ll~s~~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P~ 229 (514)
T KOG0166|consen 150 DAGAVPIFIQLLSSPSADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNPS 229 (514)
T ss_pred cCCchHHHHHHhcCCcHHHHHHHHHHHhccccCChHHHHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCCCC
Confidence 99999999999999886 4899999999995 56788888899999999999987765 78899999999999877544
Q ss_pred cccc-cccchhchHHhh--cCchHHHHHHHHHHHHhcCcchH-HHHHhhcCChHHHHHHhhcCCHHHHHHHHHHHHHHhc
Q 036199 542 SHIA-PSEFLPKLVPFL--KDATLAVSCLVILKNMCNTEHAR-VCVVETSGCLPSVAELLEIGSEEDQEHAVAILLCLCS 617 (710)
Q Consensus 542 ~~iv-~aG~V~~Lv~lL--~~~~~~~~al~iL~nLa~~~e~r-~~i~~~~g~I~~Lv~lL~~~s~~~ke~A~~aL~~Lc~ 617 (710)
..+. -+.++|.|..+| .|+++...|+++|+.|+.++..+ ..+++ .|.++.||.+|.+.++.++-.|+.++-|+..
T Consensus 230 P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~-~gvv~~LV~lL~~~~~~v~~PaLRaiGNIvt 308 (514)
T KOG0166|consen 230 PPFDVVAPILPALLRLLHSTDEEVLTDACWALSYLTDGSNEKIQMVID-AGVVPRLVDLLGHSSPKVVTPALRAIGNIVT 308 (514)
T ss_pred CcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHH-ccchHHHHHHHcCCCcccccHHHhhccceee
Confidence 4443 378899999999 45778999999999999865544 55566 8999999999999999999999999999999
Q ss_pred CChHHHHHHHhCCchHHHHHHhh-cCCHHHHHHHHHHHHHhhh
Q 036199 618 QRDQYCKLVMNEGVIPSLVKISV-YGNDKAKVSALELRRLLRD 659 (710)
Q Consensus 618 ~~~~~~~~v~~~G~v~~Lv~L~~-~gt~~~k~kA~~LL~~l~~ 659 (710)
+++...+.++..|++|.|..++. +.....|+.|.|.+..+..
T Consensus 309 G~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iSNItA 351 (514)
T KOG0166|consen 309 GSDEQTQVVINSGALPVLSNLLSSSPKESIKKEACWTISNITA 351 (514)
T ss_pred ccHHHHHHHHhcChHHHHHHHhccCcchhHHHHHHHHHHHhhc
Confidence 99999999999999999999987 5566688889999988765
|
|
| >COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.5e-18 Score=177.49 Aligned_cols=259 Identities=15% Similarity=0.104 Sum_probs=222.2
Q ss_pred HHHHHHHHHHHHHccCcccchhcccCCcHHHHHHHhhccccCCCHHHHHHHHHHHHHHhccC-CCCCccccccchHHHHH
Q 036199 397 CQCKVIEDYETRLEHDNQVSHSLSSTNFVEPLIRFLRDARDLHDSRAQRIGCRLLLAFVSKN-RSGIPYLNEDLFSLLAS 475 (710)
Q Consensus 397 ~q~~Al~~L~~Lak~~~~~r~~I~~~G~I~~LV~lL~s~~~~~d~~~q~~A~~~L~nL~~~~-~~k~~i~~~gaI~~LV~ 475 (710)
.|.+|+++|...+.+..+....+++.|++|.++.+|.+ ++..+++.++++|.|++.++ ..|..+++.|++++++.
T Consensus 131 lqfEAaWalTNiaSGtt~QTkvVvd~~AVPlfiqlL~s----~~~~V~eQavWALGNiAGDS~~~RD~vL~~galeplL~ 206 (526)
T COG5064 131 LQFEAAWALTNIASGTTQQTKVVVDAGAVPLFIQLLSS----TEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLG 206 (526)
T ss_pred HHHHHHHHHhhhccCcccceEEEEeCCchHHHHHHHcC----chHHHHHHHHHHhccccCCchhHHHHHHhcCchHHHHH
Confidence 46799999999999888877888999999999999988 67889999999999998765 44677789999999999
Q ss_pred HhccCcH----HHHHHHHHHHhccCchhhHHHh-hhCcHHHHHHhhcCCCHHHHHHHHHHHHHhccCcccc-cccccccc
Q 036199 476 FLHSAAA----TEETLAILVALSSYAYFISKIV-ASGALASILNMLDSPNGKFQELAIKILHNLSSDVDIQ-SHIAPSEF 549 (710)
Q Consensus 476 lL~s~~~----~~~Aa~~L~~Ls~~~~nk~~I~-~~GaI~~LV~LL~~~~~~~~~~A~~aL~nLs~~~en~-~~iv~aG~ 549 (710)
+|.+... -.++.|+|.||+....-...-. -+.++|.|.+|+.+.|+++..+|++||..|+..+..+ ..+++.|.
T Consensus 207 ll~ss~~~ismlRn~TWtLSNlcRGknP~P~w~~isqalpiL~KLiys~D~evlvDA~WAiSYlsDg~~E~i~avld~g~ 286 (526)
T COG5064 207 LLLSSAIHISMLRNATWTLSNLCRGKNPPPDWSNISQALPILAKLIYSRDPEVLVDACWAISYLSDGPNEKIQAVLDVGI 286 (526)
T ss_pred HHHhccchHHHHHHhHHHHHHhhCCCCCCCchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhccCcHHHHHHHHhcCC
Confidence 9986654 2699999999996433222221 1457999999999999999999999999999876555 56678999
Q ss_pred hhchHHhhcCc--hHHHHHHHHHHHHhcCcchHH-HHHhhcCChHHHHHHhhcCCHHHHHHHHHHHHHHhcCChHHHHHH
Q 036199 550 LPKLVPFLKDA--TLAVSCLVILKNMCNTEHARV-CVVETSGCLPSVAELLEIGSEEDQEHAVAILLCLCSQRDQYCKLV 626 (710)
Q Consensus 550 V~~Lv~lL~~~--~~~~~al~iL~nLa~~~e~r~-~i~~~~g~I~~Lv~lL~~~s~~~ke~A~~aL~~Lc~~~~~~~~~v 626 (710)
.+.|+.+|..+ .++..|+....|+....+... .+++ .|+++.+-.+|.+.....+..|||.+.++..++.+..+.+
T Consensus 287 ~~RLvElLs~~sa~iqtPalR~vGNIVTG~D~QTqviI~-~G~L~a~~~lLs~~ke~irKEaCWTiSNITAGnteqiqav 365 (526)
T COG5064 287 PGRLVELLSHESAKIQTPALRSVGNIVTGSDDQTQVIIN-CGALKAFRSLLSSPKENIRKEACWTISNITAGNTEQIQAV 365 (526)
T ss_pred cHHHHHHhcCccccccCHHHHhhcCeeecCccceehhee-cccHHHHHHHhcChhhhhhhhhheeecccccCCHHHHHHH
Confidence 99999999765 568899999999998666554 4455 8999999999999888999999999999999999999999
Q ss_pred HhCCchHHHHHHhhcCCHHHHHHHHHHHHHhhhc
Q 036199 627 MNEGVIPSLVKISVYGNDKAKVSALELRRLLRDV 660 (710)
Q Consensus 627 ~~~G~v~~Lv~L~~~gt~~~k~kA~~LL~~l~~~ 660 (710)
++...+|+|+.++....-+.|+.|.|.+..+...
T Consensus 366 id~nliPpLi~lls~ae~k~kKEACWAisNatsg 399 (526)
T COG5064 366 IDANLIPPLIHLLSSAEYKIKKEACWAISNATSG 399 (526)
T ss_pred HhcccchHHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 9999999999999999999999999998876654
|
|
| >PF05804 KAP: Kinesin-associated protein (KAP) | Back alignment and domain information |
|---|
Probab=99.76 E-value=1e-17 Score=193.17 Aligned_cols=216 Identities=26% Similarity=0.388 Sum_probs=188.9
Q ss_pred HHHHHHHHHHHHHHhccCCCCCccccccchHHHHHHhccCcHH--HHHHHHHHHhccCchhhHHHhhhCcHHHHHHhhcC
Q 036199 441 SRAQRIGCRLLLAFVSKNRSGIPYLNEDLFSLLASFLHSAAAT--EETLAILVALSSYAYFISKIVASGALASILNMLDS 518 (710)
Q Consensus 441 ~~~q~~A~~~L~nL~~~~~~k~~i~~~gaI~~LV~lL~s~~~~--~~Aa~~L~~Ls~~~~nk~~I~~~GaI~~LV~LL~~ 518 (710)
....+.+..+|+|++.+..++..+.+.|+|+.||++|++++.. ..+++.|.+||...+||..+++.|+|++|++++.+
T Consensus 263 eqLlrv~~~lLlNLAed~~ve~kM~~~~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~~ENK~~m~~~giV~kL~kLl~s 342 (708)
T PF05804_consen 263 EQLLRVAFYLLLNLAEDPRVELKMVNKGIVSLLVKCLDRENEELLILAVTFLKKLSIFKENKDEMAESGIVEKLLKLLPS 342 (708)
T ss_pred HHHHHHHHHHHHHHhcChHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHhcC
Confidence 4566788889999999998888888999999999999988764 47899999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhccCcccccccccccchhchHHhhcCchHHHHHHHHHHHHhcCcchHHHHHhhcCChHHHHHHhh
Q 036199 519 PNGKFQELAIKILHNLSSDVDIQSHIAPSEFLPKLVPFLKDATLAVSCLVILKNMCNTEHARVCVVETSGCLPSVAELLE 598 (710)
Q Consensus 519 ~~~~~~~~A~~aL~nLs~~~en~~~iv~aG~V~~Lv~lL~~~~~~~~al~iL~nLa~~~e~r~~i~~~~g~I~~Lv~lL~ 598 (710)
++.+....|+++|+|||.+++++..|++.|+||.|+.+|.+++....|+.+|.+||..+++|..+.. .++||.|+++|.
T Consensus 343 ~~~~l~~~aLrlL~NLSfd~~~R~~mV~~GlIPkLv~LL~d~~~~~val~iLy~LS~dd~~r~~f~~-TdcIp~L~~~Ll 421 (708)
T PF05804_consen 343 ENEDLVNVALRLLFNLSFDPELRSQMVSLGLIPKLVELLKDPNFREVALKILYNLSMDDEARSMFAY-TDCIPQLMQMLL 421 (708)
T ss_pred CCHHHHHHHHHHHHHhCcCHHHHHHHHHCCCcHHHHHHhCCCchHHHHHHHHHHhccCHhhHHHHhh-cchHHHHHHHHH
Confidence 9999999999999999999999999999999999999999998889999999999999999999988 589999999877
Q ss_pred c-CCHHHHHHHHHHHHHHhcCChHHHHHHHhCCchHHHHHHhhcCCHHHHHHHHHHHHHhhhcc
Q 036199 599 I-GSEEDQEHAVAILLCLCSQRDQYCKLVMNEGVIPSLVKISVYGNDKAKVSALELRRLLRDVA 661 (710)
Q Consensus 599 ~-~s~~~ke~A~~aL~~Lc~~~~~~~~~v~~~G~v~~Lv~L~~~gt~~~k~kA~~LL~~l~~~~ 661 (710)
. ++++.+..+++++.||+.+. .+.+.+.+.|+++.|+.......+. ...++++.++.|.
T Consensus 422 ~~~~~~v~~eliaL~iNLa~~~-rnaqlm~~g~gL~~L~~ra~~~~D~---lLlKlIRNiS~h~ 481 (708)
T PF05804_consen 422 ENSEEEVQLELIALLINLALNK-RNAQLMCEGNGLQSLMKRALKTRDP---LLLKLIRNISQHD 481 (708)
T ss_pred hCCCccccHHHHHHHHHHhcCH-HHHHHHHhcCcHHHHHHHHHhcccH---HHHHHHHHHHhcC
Confidence 6 45556667888888988887 8889999999999999887665432 2334555555553
|
|
| >COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.72 E-value=7.2e-17 Score=165.36 Aligned_cols=265 Identities=16% Similarity=0.182 Sum_probs=217.7
Q ss_pred hhhcCCCHHHHHHHHHHHHHHHcc-CcccchhcccCCcHHHHHHHhhccccCCCHHHHHHHHHHHHHHhccCCC-CCccc
Q 036199 388 SRLTELNWDCQCKVIEDYETRLEH-DNQVSHSLSSTNFVEPLIRFLRDARDLHDSRAQRIGCRLLLAFVSKNRS-GIPYL 465 (710)
Q Consensus 388 ~~L~s~~~e~q~~Al~~L~~Lak~-~~~~r~~I~~~G~I~~LV~lL~s~~~~~d~~~q~~A~~~L~nL~~~~~~-k~~i~ 465 (710)
..|-+.+.+.|.+|+.+.|.++.. ..--...+...|.+|.+|+||.+. ...-.|-.|+++|.|+++.... ...++
T Consensus 78 ~~l~SdDie~q~qav~kFR~~LS~E~~PPIq~VIdaGvVpRfvefm~~~---q~~mlqfEAaWalTNiaSGtt~QTkvVv 154 (526)
T COG5064 78 QQLFSDDIEQQLQAVYKFRKLLSKETSPPIQPVIDAGVVPRFVEFMDEI---QRDMLQFEAAWALTNIASGTTQQTKVVV 154 (526)
T ss_pred HHHhhhHHHHHHHHHHHHHHHhccccCCCchhHHhccccHHHHHHHHhc---chhHHHHHHHHHHhhhccCcccceEEEE
Confidence 456677889999999999876643 333345678899999999999642 4456788999999999775433 33456
Q ss_pred cccchHHHHHHhccCcH--HHHHHHHHHHhccC-chhhHHHhhhCcHHHHHHhhcCCCH--HHHHHHHHHHHHhccCcc-
Q 036199 466 NEDLFSLLASFLHSAAA--TEETLAILVALSSY-AYFISKIVASGALASILNMLDSPNG--KFQELAIKILHNLSSDVD- 539 (710)
Q Consensus 466 ~~gaI~~LV~lL~s~~~--~~~Aa~~L~~Ls~~-~~nk~~I~~~GaI~~LV~LL~~~~~--~~~~~A~~aL~nLs~~~e- 539 (710)
+.|++|.++++|.++.. .+.|+|+|.|++.+ +..|..+.+.|++.+|+.+|.+... ....++.++|.|||....
T Consensus 155 d~~AVPlfiqlL~s~~~~V~eQavWALGNiAGDS~~~RD~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNlcRGknP 234 (526)
T COG5064 155 DAGAVPLFIQLLSSTEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCRGKNP 234 (526)
T ss_pred eCCchHHHHHHHcCchHHHHHHHHHHhccccCCchhHHHHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHhhCCCCC
Confidence 99999999999998875 47999999999964 5677888899999999999976654 778999999999996422
Q ss_pred --cccccccccchhchHHhh--cCchHHHHHHHHHHHHhcCcchH-HHHHhhcCChHHHHHHhhcCCHHHHHHHHHHHHH
Q 036199 540 --IQSHIAPSEFLPKLVPFL--KDATLAVSCLVILKNMCNTEHAR-VCVVETSGCLPSVAELLEIGSEEDQEHAVAILLC 614 (710)
Q Consensus 540 --n~~~iv~aG~V~~Lv~lL--~~~~~~~~al~iL~nLa~~~e~r-~~i~~~~g~I~~Lv~lL~~~s~~~ke~A~~aL~~ 614 (710)
+-..| .-++|.|.+++ .|+++...|++++.-|+..+..+ .++.+ .|+.+.||++|.+.+..++..|+...-+
T Consensus 235 ~P~w~~i--sqalpiL~KLiys~D~evlvDA~WAiSYlsDg~~E~i~avld-~g~~~RLvElLs~~sa~iqtPalR~vGN 311 (526)
T COG5064 235 PPDWSNI--SQALPILAKLIYSRDPEVLVDACWAISYLSDGPNEKIQAVLD-VGIPGRLVELLSHESAKIQTPALRSVGN 311 (526)
T ss_pred CCchHHH--HHHHHHHHHHHhhcCHHHHHHHHHHHHHhccCcHHHHHHHHh-cCCcHHHHHHhcCccccccCHHHHhhcC
Confidence 22222 35789999998 46788999999999999976555 55566 8999999999999999999999999999
Q ss_pred HhcCChHHHHHHHhCCchHHHHHHhhcCCHHHHHHHHHHHHHhh
Q 036199 615 LCSQRDQYCKLVMNEGVIPSLVKISVYGNDKAKVSALELRRLLR 658 (710)
Q Consensus 615 Lc~~~~~~~~~v~~~G~v~~Lv~L~~~gt~~~k~kA~~LL~~l~ 658 (710)
+-.++....+.++..|+++.+..|+.+...+.|+.|.|.+..+.
T Consensus 312 IVTG~D~QTqviI~~G~L~a~~~lLs~~ke~irKEaCWTiSNIT 355 (526)
T COG5064 312 IVTGSDDQTQVIINCGALKAFRSLLSSPKENIRKEACWTISNIT 355 (526)
T ss_pred eeecCccceehheecccHHHHHHHhcChhhhhhhhhheeecccc
Confidence 99999888999999999999999999999999999999877553
|
|
| >smart00504 Ubox Modified RING finger domain | Back alignment and domain information |
|---|
Probab=99.67 E-value=4.2e-17 Score=132.45 Aligned_cols=63 Identities=46% Similarity=0.802 Sum_probs=60.4
Q ss_pred cccccCCccccCCceecCCCCccchhhHHHHhhhCCCCCCCCCCccCCCCCcccHHHHHHHHHH
Q 036199 268 VFKCPLSLRLMYDPVVIESGQTFERMWIQKWFEEGNHTCPKTKMKLVCQSLTPNTAMKDLISKW 331 (710)
Q Consensus 268 ~f~CPI~~~~m~DPV~~~~G~ty~r~~I~~w~~~g~~~cP~t~~~l~~~~l~pN~~l~~~i~~w 331 (710)
+|.||||+++|+|||+++|||+|||.||.+|+.. +.+||.|+++++..+++||..||+.|++|
T Consensus 1 ~~~Cpi~~~~~~~Pv~~~~G~v~~~~~i~~~~~~-~~~cP~~~~~~~~~~l~~~~~l~~~i~~~ 63 (63)
T smart00504 1 EFLCPISLEVMKDPVILPSGQTYERRAIEKWLLS-HGTDPVTGQPLTHEDLIPNLALKSAIQEW 63 (63)
T ss_pred CcCCcCCCCcCCCCEECCCCCEEeHHHHHHHHHH-CCCCCCCcCCCChhhceeCHHHHHHHHhC
Confidence 5899999999999999999999999999999987 67899999999999999999999999998
|
Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination. |
| >PF05804 KAP: Kinesin-associated protein (KAP) | Back alignment and domain information |
|---|
Probab=99.67 E-value=2.9e-15 Score=173.07 Aligned_cols=269 Identities=17% Similarity=0.181 Sum_probs=216.7
Q ss_pred hhhcCCCHHHHHHHHHHHHHHHccCcccchhcccCCcHHHHHHHhhccccCCCHHHHHHHHHHHHHHhccCCCCCccccc
Q 036199 388 SRLTELNWDCQCKVIEDYETRLEHDNQVSHSLSSTNFVEPLIRFLRDARDLHDSRAQRIGCRLLLAFVSKNRSGIPYLNE 467 (710)
Q Consensus 388 ~~L~s~~~e~q~~Al~~L~~Lak~~~~~r~~I~~~G~I~~LV~lL~s~~~~~d~~~q~~A~~~L~nL~~~~~~k~~i~~~ 467 (710)
..|.+.+.+...-++.-|+.|+-. .+|+..|++.|+|+.|+++|.+ .+.+.+..++.+|+|++.+...|..++..
T Consensus 297 ~~Ldr~n~ellil~v~fLkkLSi~-~ENK~~m~~~giV~kL~kLl~s----~~~~l~~~aLrlL~NLSfd~~~R~~mV~~ 371 (708)
T PF05804_consen 297 KCLDRENEELLILAVTFLKKLSIF-KENKDEMAESGIVEKLLKLLPS----ENEDLVNVALRLLFNLSFDPELRSQMVSL 371 (708)
T ss_pred HHHcCCCHHHHHHHHHHHHHHcCC-HHHHHHHHHcCCHHHHHHHhcC----CCHHHHHHHHHHHHHhCcCHHHHHHHHHC
Confidence 566777888888888889888765 4589999999999999999987 67889999999999999999999999999
Q ss_pred cchHHHHHHhccCcHHHHHHHHHHHhccCchhhHHHhhhCcHHHHHHhhcC-CCHHHHHHHHHHHHHhccCccccccccc
Q 036199 468 DLFSLLASFLHSAAATEETLAILVALSSYAYFISKIVASGALASILNMLDS-PNGKFQELAIKILHNLSSDVDIQSHIAP 546 (710)
Q Consensus 468 gaI~~LV~lL~s~~~~~~Aa~~L~~Ls~~~~nk~~I~~~GaI~~LV~LL~~-~~~~~~~~A~~aL~nLs~~~en~~~iv~ 546 (710)
|.||.|+.+|.++.....+.++|.+||.++++|..+...++||.|+++|-+ +++++...++.++.||+.++.|...|.+
T Consensus 372 GlIPkLv~LL~d~~~~~val~iLy~LS~dd~~r~~f~~TdcIp~L~~~Ll~~~~~~v~~eliaL~iNLa~~~rnaqlm~~ 451 (708)
T PF05804_consen 372 GLIPKLVELLKDPNFREVALKILYNLSMDDEARSMFAYTDCIPQLMQMLLENSEEEVQLELIALLINLALNKRNAQLMCE 451 (708)
T ss_pred CCcHHHHHHhCCCchHHHHHHHHHHhccCHhhHHHHhhcchHHHHHHHHHhCCCccccHHHHHHHHHHhcCHHHHHHHHh
Confidence 999999999998877778999999999999999999999999999998754 4556666778888888888888877777
Q ss_pred ccchhchHHhh-------------------------------------c---CchHHHHHHHHHHHH-------------
Q 036199 547 SEFLPKLVPFL-------------------------------------K---DATLAVSCLVILKNM------------- 573 (710)
Q Consensus 547 aG~V~~Lv~lL-------------------------------------~---~~~~~~~al~iL~nL------------- 573 (710)
.|+++.|++.. . ++++.-+|+++|+||
T Consensus 452 g~gL~~L~~ra~~~~D~lLlKlIRNiS~h~~~~k~~f~~~i~~L~~~v~~~~~ee~~vE~LGiLaNL~~~~ld~~~ll~~ 531 (708)
T PF05804_consen 452 GNGLQSLMKRALKTRDPLLLKLIRNISQHDGPLKELFVDFIGDLAKIVSSGDSEEFVVECLGILANLTIPDLDWAQLLQE 531 (708)
T ss_pred cCcHHHHHHHHHhcccHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHhcccCCcCHHHHHHh
Confidence 77776665432 0 011233344444444
Q ss_pred -------------------------------hcCcchHHHHHhhcCChHHHHHHhhc--CCHHHHHHHHHHHHHHhcCCh
Q 036199 574 -------------------------------CNTEHARVCVVETSGCLPSVAELLEI--GSEEDQEHAVAILLCLCSQRD 620 (710)
Q Consensus 574 -------------------------------a~~~e~r~~i~~~~g~I~~Lv~lL~~--~s~~~ke~A~~aL~~Lc~~~~ 620 (710)
|..++....++. .|.++.|+++|.. .+.+..-..+.+++.+-.+.+
T Consensus 532 ~~llp~L~~~L~~g~~~dDl~LE~Vi~~gtla~d~~~A~lL~~-sgli~~Li~LL~~kqeDdE~VlQil~~f~~ll~h~~ 610 (708)
T PF05804_consen 532 YNLLPWLKDLLKPGASEDDLLLEVVILLGTLASDPECAPLLAK-SGLIPTLIELLNAKQEDDEIVLQILYVFYQLLFHEE 610 (708)
T ss_pred CCHHHHHHHHhCCCCCChHHHHHHHHHHHHHHCCHHHHHHHHh-CChHHHHHHHHHhhCchHHHHHHHHHHHHHHHcChH
Confidence 444455555566 6889999999986 477888888999999999984
Q ss_pred HHHHHHHhCCchHHHHHHhhcCCHHHHHHHHHHHHHhhhccC
Q 036199 621 QYCKLVMNEGVIPSLVKISVYGNDKAKVSALELRRLLRDVAY 662 (710)
Q Consensus 621 ~~~~~v~~~G~v~~Lv~L~~~gt~~~k~kA~~LL~~l~~~~~ 662 (710)
.....+.+.+++..|++++.+.+...++.|...|-++.++.+
T Consensus 611 tr~~ll~~~~~~~ylidL~~d~N~~ir~~~d~~Ldii~e~d~ 652 (708)
T PF05804_consen 611 TREVLLKETEIPAYLIDLMHDKNAEIRKVCDNALDIIAEYDE 652 (708)
T ss_pred HHHHHHhccchHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCH
Confidence 444444567899999999999999999999999998876643
|
|
| >KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.54 E-value=6.2e-14 Score=163.79 Aligned_cols=264 Identities=16% Similarity=0.159 Sum_probs=216.3
Q ss_pred HHHHHHHHHHHccCcccchhcccCCcHHHHHHHhhccc--------cCCCHHHHHHHHHHHHHH-hccCCCCCccc-ccc
Q 036199 399 CKVIEDYETRLEHDNQVSHSLSSTNFVEPLIRFLRDAR--------DLHDSRAQRIGCRLLLAF-VSKNRSGIPYL-NED 468 (710)
Q Consensus 399 ~~Al~~L~~Lak~~~~~r~~I~~~G~I~~LV~lL~s~~--------~~~d~~~q~~A~~~L~nL-~~~~~~k~~i~-~~g 468 (710)
|.|+..|-.+. .++++|..|-+.|++.++-+||.-++ +......++.|.++|.|| +.+..||..+- ..|
T Consensus 316 caA~~~lMK~S-FDEEhR~aM~ELG~LqAIaeLl~vDh~mhgp~tnd~~~~aLRrYa~MALTNLTFGDv~NKa~LCs~rg 394 (2195)
T KOG2122|consen 316 CAALCTLMKLS-FDEEHRHAMNELGGLQAIAELLQVDHEMHGPETNDGECNALRRYAGMALTNLTFGDVANKATLCSQRG 394 (2195)
T ss_pred HHHHHHHHHhh-ccHHHHHHHHHhhhHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhccccccccchhhhhhhhh
Confidence 46666665554 56889999999999999999885431 112346789999999999 66777776654 579
Q ss_pred chHHHHHHhccCcH--HHHHHHHHHHhc-cCchh-hHHHhhhCcHHHHHHhh-cCCCHHHHHHHHHHHHHhcc-Cccccc
Q 036199 469 LFSLLASFLHSAAA--TEETLAILVALS-SYAYF-ISKIVASGALASILNML-DSPNGKFQELAIKILHNLSS-DVDIQS 542 (710)
Q Consensus 469 aI~~LV~lL~s~~~--~~~Aa~~L~~Ls-~~~~n-k~~I~~~GaI~~LV~LL-~~~~~~~~~~A~~aL~nLs~-~~en~~ 542 (710)
.+..||..|.+... .+--+.+|+||+ .-+.| |..+.+.|-+..|+..- ........+..+.|||||+. +.+||.
T Consensus 395 fMeavVAQL~s~peeL~QV~AsvLRNLSWRAD~nmKkvLrE~GsVtaLa~~al~~~kEsTLKavLSALWNLSAHcteNKA 474 (2195)
T KOG2122|consen 395 FMEAVVAQLISAPEELLQVYASVLRNLSWRADSNMKKVLRETGSVTALAACALRNKKESTLKAVLSALWNLSAHCTENKA 474 (2195)
T ss_pred HHHHHHHHHhcChHHHHHHHHHHHHhccccccccHHHHHHhhhhHHHHHHHHHHhcccchHHHHHHHHhhhhhcccccch
Confidence 99999999987764 367889999999 44444 44555789999998854 55666788999999999996 689999
Q ss_pred cccc-ccchhchHHhhcC------chHHHHHHHHHHHHhc----CcchHHHHHhhcCChHHHHHHhhcCCHHHHHHHHHH
Q 036199 543 HIAP-SEFLPKLVPFLKD------ATLAVSCLVILKNMCN----TEHARVCVVETSGCLPSVAELLEIGSEEDQEHAVAI 611 (710)
Q Consensus 543 ~iv~-aG~V~~Lv~lL~~------~~~~~~al~iL~nLa~----~~e~r~~i~~~~g~I~~Lv~lL~~~s~~~ke~A~~a 611 (710)
.|.. -|++..||.+|.- -.+.+.+-+||+|.++ ++..|+.+.+ ..|+..|+..|++.+-.+.-|||++
T Consensus 475 ~iCaVDGALaFLVg~LSY~~qs~tLaIIEsaGGILRNVSS~IAt~E~yRQILR~-~NCLq~LLQ~LKS~SLTiVSNaCGT 553 (2195)
T KOG2122|consen 475 EICAVDGALAFLVGTLSYEGQSNTLAIIESAGGILRNVSSLIATCEDYRQILRR-HNCLQTLLQHLKSHSLTIVSNACGT 553 (2195)
T ss_pred hhhcccchHHHHHhhccccCCcchhhhhhcCccHHHHHHhHhhccchHHHHHHH-hhHHHHHHHHhhhcceEEeecchhh
Confidence 9987 7999999999942 2468999999999876 6777777777 7999999999999999999999999
Q ss_pred HHHHhcCChHHHHHHHhCCchHHHHHHhhcCCHHHHHHHHHHHHHhhhccCCc
Q 036199 612 LLCLCSQRDQYCKLVMNEGVIPSLVKISVYGNDKAKVSALELRRLLRDVAYSV 664 (710)
Q Consensus 612 L~~Lc~~~~~~~~~v~~~G~v~~Lv~L~~~gt~~~k~kA~~LL~~l~~~~~~~ 664 (710)
||||...+++.++++.+.|+|+.|..|..+.+...-+-+.+.|+.|-.++...
T Consensus 554 LWNLSAR~p~DQq~LwD~gAv~mLrnLIhSKhkMIa~GSaaALrNLln~RPAk 606 (2195)
T KOG2122|consen 554 LWNLSARSPEDQQMLWDDGAVPMLRNLIHSKHKMIAMGSAAALRNLLNFRPAK 606 (2195)
T ss_pred hhhhhcCCHHHHHHHHhcccHHHHHHHHhhhhhhhhhhHHHHHHHHhcCCchh
Confidence 99999999999999999999999999999999888888888888777777443
|
|
| >KOG4199 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.52 E-value=7.6e-13 Score=136.14 Aligned_cols=263 Identities=14% Similarity=0.211 Sum_probs=216.4
Q ss_pred cCCCHHHHHHHHHHHHHHHccCcccchhcccCCcHHHHHHHhhccccCCCHHHHHHHHHHHHHHhccCCCCC--------
Q 036199 391 TELNWDCQCKVIEDYETRLEHDNQVSHSLSSTNFVEPLIRFLRDARDLHDSRAQRIGCRLLLAFVSKNRSGI-------- 462 (710)
Q Consensus 391 ~s~~~e~q~~Al~~L~~Lak~~~~~r~~I~~~G~I~~LV~lL~s~~~~~d~~~q~~A~~~L~nL~~~~~~k~-------- 462 (710)
+..+.+.-+..+.-++..+-.++.||..+.+.++++.+...|... +-.++.+.+..++..+..++..|.
T Consensus 157 ~~~~~dlt~~~~~~v~~Ac~~hE~nrQ~~m~~~il~Li~~~l~~~---gk~~~VRel~~a~r~l~~dDDiRV~fg~ah~h 233 (461)
T KOG4199|consen 157 KVESEEVTLLTLQWLQKACIMHEVNRQLFMELKILELILQVLNRE---GKTRTVRELYDAIRALLTDDDIRVVFGQAHGH 233 (461)
T ss_pred ccchHHHHHHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHccc---CccHHHHHHHHHHHHhcCCCceeeecchhhHH
Confidence 344566667777788888888999999999999999999877652 233788888999998866554433
Q ss_pred --ccccccchHHHHHHhccCc---HHHHHHHHHHHhccCchhhHHHhhhCcHHHHHHhhcCCC-H---HHHHHHHHHHHH
Q 036199 463 --PYLNEDLFSLLASFLHSAA---ATEETLAILVALSSYAYFISKIVASGALASILNMLDSPN-G---KFQELAIKILHN 533 (710)
Q Consensus 463 --~i~~~gaI~~LV~lL~s~~---~~~~Aa~~L~~Ls~~~~nk~~I~~~GaI~~LV~LL~~~~-~---~~~~~A~~aL~n 533 (710)
.|+..|++..|++.|.-+. .-..+..+|..|+..++.+..|.++|++..|++++.+.+ . ...+.++..|..
T Consensus 234 Ar~ia~e~~l~~L~Eal~A~~dp~~L~~l~~tl~~lAVr~E~C~~I~e~GGl~tl~~~i~d~n~~~~r~l~k~~lslLra 313 (461)
T KOG4199|consen 234 ARTIAKEGILTALTEALQAGIDPDSLVSLSTTLKALAVRDEICKSIAESGGLDTLLRCIDDSNEQGNRTLAKTCLSLLRA 313 (461)
T ss_pred HHHHHHhhhHHHHHHHHHccCCccHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHhhhchhhHHHHHHHHHHHHHH
Confidence 3456788889999887443 346889999999999999999999999999999997643 2 345778889999
Q ss_pred hccCcccccccccccchhchHHhh----cCchHHHHHHHHHHHHhc-CcchHHHHHhhcCChHHHHHHhhc--CCHHHHH
Q 036199 534 LSSDVDIQSHIAPSEFLPKLVPFL----KDATLAVSCLVILKNMCN-TEHARVCVVETSGCLPSVAELLEI--GSEEDQE 606 (710)
Q Consensus 534 Ls~~~en~~~iv~aG~V~~Lv~lL----~~~~~~~~al~iL~nLa~-~~e~r~~i~~~~g~I~~Lv~lL~~--~s~~~ke 606 (710)
|+.++++|..||+.|+.+.++.++ ++|.+...++.++..||- .|+.-..+++ .|+-...|+.|+. .-...|.
T Consensus 314 lAG~DsvKs~IV~~gg~~~ii~l~~~h~~~p~Vi~~~~a~i~~l~LR~pdhsa~~ie-~G~a~~avqAmkahP~~a~vQr 392 (461)
T KOG4199|consen 314 LAGSDSVKSTIVEKGGLDKIITLALRHSDDPLVIQEVMAIISILCLRSPDHSAKAIE-AGAADLAVQAMKAHPVAAQVQR 392 (461)
T ss_pred HhCCCchHHHHHHhcChHHHHHHHHHcCCChHHHHHHHHHHHHHHhcCcchHHHHHh-cchHHHHHHHHHhCcHHHHHHH
Confidence 999999999999999999999887 568889999999999996 7888888888 6888888888885 3567799
Q ss_pred HHHHHHHHHhcCChHHHHHHHhCCchHHHHHHhhcCCHHHHHHHHHHHHHhh
Q 036199 607 HAVAILLCLCSQRDQYCKLVMNEGVIPSLVKISVYGNDKAKVSALELRRLLR 658 (710)
Q Consensus 607 ~A~~aL~~Lc~~~~~~~~~v~~~G~v~~Lv~L~~~gt~~~k~kA~~LL~~l~ 658 (710)
+|++.+.|+..++.+++..++..|+ +.|+......++....-|...|+-|-
T Consensus 393 nac~~IRNiv~rs~~~~~~~l~~Gi-E~Li~~A~~~h~tce~~akaALRDLG 443 (461)
T KOG4199|consen 393 NACNMIRNIVVRSAENRTILLANGI-EKLIRTAKANHETCEAAAKAALRDLG 443 (461)
T ss_pred HHHHHHHHHHHhhhhccchHHhccH-HHHHHHHHhcCccHHHHHHHHHHhcC
Confidence 9999999999999999999999986 77877777777777777888888654
|
|
| >KOG4199 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.48 E-value=2.1e-12 Score=132.88 Aligned_cols=261 Identities=16% Similarity=0.182 Sum_probs=214.2
Q ss_pred CCHHHHHHHHHHHHHHHccCcccchhcccCCcHHHHHHHhhccccCCCHHHHHHHHHHHHHH-hccCCCCCccccccchH
Q 036199 393 LNWDCQCKVIEDYETRLEHDNQVSHSLSSTNFVEPLIRFLRDARDLHDSRAQRIGCRLLLAF-VSKNRSGIPYLNEDLFS 471 (710)
Q Consensus 393 ~~~e~q~~Al~~L~~Lak~~~~~r~~I~~~G~I~~LV~lL~s~~~~~d~~~q~~A~~~L~nL-~~~~~~k~~i~~~gaI~ 471 (710)
++...-.++++.|-.+....++ +...-++..++.+|.... .+.++-......+..- ..++.||..+++.++++
T Consensus 119 ~~~~~l~ksL~al~~lt~~qpd----l~da~g~~vvv~lL~~~~--~~~dlt~~~~~~v~~Ac~~hE~nrQ~~m~~~il~ 192 (461)
T KOG4199|consen 119 PNESVLKKSLEAINSLTHKQPD----LFDAEAMAVVLKLLALKV--ESEEVTLLTLQWLQKACIMHEVNRQLFMELKILE 192 (461)
T ss_pred CchhHHHHHHHHHHHhhcCCcc----hhccccHHHHHHHHhccc--chHHHHHHHHHHHHHHHHHhHHHHHHHHHhhHHH
Confidence 4555667889988888766555 456678889999997532 4455656666666665 45788899999999999
Q ss_pred HHHHHhccCcH---HHHHHHHHHHhccCchhh----------HHHhhhCcHHHHHHhhcCC-CHHHHHHHHHHHHHhccC
Q 036199 472 LLASFLHSAAA---TEETLAILVALSSYAYFI----------SKIVASGALASILNMLDSP-NGKFQELAIKILHNLSSD 537 (710)
Q Consensus 472 ~LV~lL~s~~~---~~~Aa~~L~~Ls~~~~nk----------~~I~~~GaI~~LV~LL~~~-~~~~~~~A~~aL~nLs~~ 537 (710)
.+...|..... -+++.++++.|..+++.| ..|+..|++..|++.|..+ +|.....+..+|..|+..
T Consensus 193 Li~~~l~~~gk~~~VRel~~a~r~l~~dDDiRV~fg~ah~hAr~ia~e~~l~~L~Eal~A~~dp~~L~~l~~tl~~lAVr 272 (461)
T KOG4199|consen 193 LILQVLNREGKTRTVRELYDAIRALLTDDDIRVVFGQAHGHARTIAKEGILTALTEALQAGIDPDSLVSLSTTLKALAVR 272 (461)
T ss_pred HHHHHHcccCccHHHHHHHHHHHHhcCCCceeeecchhhHHHHHHHHhhhHHHHHHHHHccCCccHHHHHHHHHHHHHHH
Confidence 99988875443 268889999888766644 4566678899999999755 688999999999999999
Q ss_pred cccccccccccchhchHHhhcCc------hHHHHHHHHHHHHhcCcchHHHHHhhcCChHHHHHHhhc--CCHHHHHHHH
Q 036199 538 VDIQSHIAPSEFLPKLVPFLKDA------TLAVSCLVILKNMCNTEHARVCVVETSGCLPSVAELLEI--GSEEDQEHAV 609 (710)
Q Consensus 538 ~en~~~iv~aG~V~~Lv~lL~~~------~~~~~al~iL~nLa~~~e~r~~i~~~~g~I~~Lv~lL~~--~s~~~ke~A~ 609 (710)
++.+..++++|++..|+.+|.|. .+...|+..|+.||.++..+..|++ .||.+.++.++.. .+|.+-+.++
T Consensus 273 ~E~C~~I~e~GGl~tl~~~i~d~n~~~~r~l~k~~lslLralAG~DsvKs~IV~-~gg~~~ii~l~~~h~~~p~Vi~~~~ 351 (461)
T KOG4199|consen 273 DEICKSIAESGGLDTLLRCIDDSNEQGNRTLAKTCLSLLRALAGSDSVKSTIVE-KGGLDKIITLALRHSDDPLVIQEVM 351 (461)
T ss_pred HHHHHHHHHccCHHHHHHHHhhhchhhHHHHHHHHHHHHHHHhCCCchHHHHHH-hcChHHHHHHHHHcCCChHHHHHHH
Confidence 99999999999999999999652 3578899999999999999999999 8999999998764 7999999999
Q ss_pred HHHHHHhcCChHHHHHHHhCCchHHHHHHhhcCCH--HHHHHHHHHHHHhhhc
Q 036199 610 AILLCLCSQRDQYCKLVMNEGVIPSLVKISVYGND--KAKVSALELRRLLRDV 660 (710)
Q Consensus 610 ~aL~~Lc~~~~~~~~~v~~~G~v~~Lv~L~~~gt~--~~k~kA~~LL~~l~~~ 660 (710)
.++.-||-+.+++...+++.|+-...++-++.... .++++|.++++.+-.+
T Consensus 352 a~i~~l~LR~pdhsa~~ie~G~a~~avqAmkahP~~a~vQrnac~~IRNiv~r 404 (461)
T KOG4199|consen 352 AIISILCLRSPDHSAKAIEAGAADLAVQAMKAHPVAAQVQRNACNMIRNIVVR 404 (461)
T ss_pred HHHHHHHhcCcchHHHHHhcchHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999998888877666544 4679999999987654
|
|
| >KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures] | Back alignment and domain information |
|---|
Probab=99.46 E-value=5.7e-13 Score=151.05 Aligned_cols=269 Identities=19% Similarity=0.177 Sum_probs=210.3
Q ss_pred hhhcCCCHHHHHHHHHHHHHHHccCcccchhcccCCcHHHHHHHhhccccCCCHHHHHHHHHHHHHHhc---cCCCCCcc
Q 036199 388 SRLTELNWDCQCKVIEDYETRLEHDNQVSHSLSSTNFVEPLIRFLRDARDLHDSRAQRIGCRLLLAFVS---KNRSGIPY 464 (710)
Q Consensus 388 ~~L~s~~~e~q~~Al~~L~~Lak~~~~~r~~I~~~G~I~~LV~lL~s~~~~~d~~~q~~A~~~L~nL~~---~~~~k~~i 464 (710)
..|.+.+...|..|+.-|..++..+.+.+..+.+-|+|+.||.+|.+ ...++|++|+.+|.|++- ++.||..|
T Consensus 240 ~mL~~q~~~~qsnaaaylQHlcfgd~~ik~~vrqlggI~kLv~Ll~~----~~~evq~~acgaLRNLvf~~~~~~NKlai 315 (717)
T KOG1048|consen 240 SMLMSQDPSVQSNAAAYLQHLCFGDNKIKSRVRQLGGIPKLVALLDH----RNDEVQRQACGALRNLVFGKSTDSNKLAI 315 (717)
T ss_pred HHHhccChhhhHHHHHHHHHHHhhhHHHHHHHHHhccHHHHHHHhcC----CcHHHHHHHHHHHHhhhcccCCcccchhh
Confidence 56777788899999999999999999999999999999999999988 789999999999999953 34689999
Q ss_pred ccccchHHHHHHhcc-Cc--HHHHHHHHHHHhccCchhhHHHhhhCcHHHHHHhhc---C----C-------CHHHHHHH
Q 036199 465 LNEDLFSLLASFLHS-AA--ATEETLAILVALSSYAYFISKIVASGALASILNMLD---S----P-------NGKFQELA 527 (710)
Q Consensus 465 ~~~gaI~~LV~lL~s-~~--~~~~Aa~~L~~Ls~~~~nk~~I~~~GaI~~LV~LL~---~----~-------~~~~~~~A 527 (710)
.+.++|+.++++|+. ++ ..+..+++|+||+.+|..|..|... +++.|-+-+- + + +..+..++
T Consensus 316 ~~~~Gv~~l~~~Lr~t~D~ev~e~iTg~LWNLSS~D~lK~~ii~~-al~tLt~~vI~P~Sgw~~~~~~~~~~~~~vf~n~ 394 (717)
T KOG1048|consen 316 KELNGVPTLVRLLRHTQDDEVRELITGILWNLSSNDALKMLIITS-ALSTLTDNVIIPHSGWEEEPAPRKAEDSTVFRNV 394 (717)
T ss_pred hhcCChHHHHHHHHhhcchHHHHHHHHHHhcccchhHHHHHHHHH-HHHHHHHhhcccccccCCCCcccccccceeeehh
Confidence 999999999999995 33 3479999999999998888888754 3555554331 1 1 24567899
Q ss_pred HHHHHHhcc-Cccccccccc-ccchhchHHhhc--------CchHHHHHHHHHHHHhcCcc-----hH-HHHHh------
Q 036199 528 IKILHNLSS-DVDIQSHIAP-SEFLPKLVPFLK--------DATLAVSCLVILKNMCNTEH-----AR-VCVVE------ 585 (710)
Q Consensus 528 ~~aL~nLs~-~~en~~~iv~-aG~V~~Lv~lL~--------~~~~~~~al~iL~nLa~~~e-----~r-~~i~~------ 585 (710)
+++|.|++. ..+.+.+|-+ .|.|..|+..+. |...++.|+.+|+||+-.-+ .. ..+..
T Consensus 395 tgcLRNlSs~~~eaR~~mr~c~GLIdaL~~~iq~~i~~~~~d~K~VENcvCilRNLSYrl~~Evp~~~~~~~~~~~~~~~ 474 (717)
T KOG1048|consen 395 TGCLRNLSSAGQEAREQMRECDGLIDALLFSIQTAIQKSDLDSKSVENCVCILRNLSYRLEAEVPPKYRQVLANIARLPG 474 (717)
T ss_pred hhhhccccchhHHHHHHHhhccchHHHHHHHHHHHHHhccccchhHHHHHHHHhhcCchhhhhcCHhhhhHhhccccccc
Confidence 999999998 7888899987 899999999883 34569999999999986221 00 00000
Q ss_pred -----------------------------------------hcCChHHHHHHhh-cCCHHHHHHHHHHHHHHhcCCh---
Q 036199 586 -----------------------------------------TSGCLPSVAELLE-IGSEEDQEHAVAILLCLCSQRD--- 620 (710)
Q Consensus 586 -----------------------------------------~~g~I~~Lv~lL~-~~s~~~ke~A~~aL~~Lc~~~~--- 620 (710)
++..|..-..+|. ..++.+.|.++++|-||+....
T Consensus 475 ~~~~~~~~gcf~~k~~k~~~~~~~~~~pe~~~~pkG~e~Lw~p~vVr~Yl~Ll~~s~n~~TlEasaGaLQNltA~~~~~~ 554 (717)
T KOG1048|consen 475 VGPPAESVGCFGFKKRKSDDNCDDLPIPERATAPKGSEWLWHPSVVRPYLLLLALSKNDNTLEASAGALQNLTAGLWTWS 554 (717)
T ss_pred CCCcccccccccchhhhchhcccccCCcccccCCCCceeeecHHHHHHHHHHHHHhcchHHHHHhhhhHhhhhccCCcch
Confidence 0001222122333 4688899999999999998772
Q ss_pred -HHHHHH-HhCCchHHHHHHhhcCCHHHHHHHHHHHHHhhhcc
Q 036199 621 -QYCKLV-MNEGVIPSLVKISVYGNDKAKVSALELRRLLRDVA 661 (710)
Q Consensus 621 -~~~~~v-~~~G~v~~Lv~L~~~gt~~~k~kA~~LL~~l~~~~ 661 (710)
..+..+ .++-+.|+|++|+.++++++.+.+..+|++|+...
T Consensus 555 ~~~~~~v~~kekgl~~l~~ll~~~~~~vv~s~a~~LrNls~d~ 597 (717)
T KOG1048|consen 555 EYMRGAVFRKEKGLPPLVELLRNDDSDVVRSAAGALRNLSRDI 597 (717)
T ss_pred hHHHhhhhhhccCccHHHHHHhcCCchHHHHHHHHHhhhccCc
Confidence 234444 78899999999999999999999999999887543
|
|
| >PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function | Back alignment and domain information |
|---|
Probab=99.35 E-value=2.9e-11 Score=125.11 Aligned_cols=195 Identities=19% Similarity=0.297 Sum_probs=167.7
Q ss_pred cccccchHHHHHHhccCc---HHHHHHHHHHHhccCchhhHHHhhhCcHHHHHHhhcCCCHHHHHHHHHHHHHhccCccc
Q 036199 464 YLNEDLFSLLASFLHSAA---ATEETLAILVALSSYAYFISKIVASGALASILNMLDSPNGKFQELAIKILHNLSSDVDI 540 (710)
Q Consensus 464 i~~~gaI~~LV~lL~s~~---~~~~Aa~~L~~Ls~~~~nk~~I~~~GaI~~LV~LL~~~~~~~~~~A~~aL~nLs~~~en 540 (710)
+.+.+-++.|+.+|+... .++.|..++.+.+..+.++..|.+.|+++.+..+|.++++.+++.|+.+|.||+.+.+|
T Consensus 8 ~l~~~~l~~Ll~lL~~t~dp~i~e~al~al~n~aaf~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en 87 (254)
T PF04826_consen 8 ILEAQELQKLLCLLESTEDPFIQEKALIALGNSAAFPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDEN 87 (254)
T ss_pred CcCHHHHHHHHHHHhcCCChHHHHHHHHHHHhhccChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChhh
Confidence 368899999999998543 25789999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccchhchHHhhc----CchHHHHHHHHHHHHhcCcchHHHHHhhcCChHHHHHHhhcCCHHHHHHHHHHHHHHh
Q 036199 541 QSHIAPSEFLPKLVPFLK----DATLAVSCLVILKNMCNTEHARVCVVETSGCLPSVAELLEIGSEEDQEHAVAILLCLC 616 (710)
Q Consensus 541 ~~~iv~aG~V~~Lv~lL~----~~~~~~~al~iL~nLa~~~e~r~~i~~~~g~I~~Lv~lL~~~s~~~ke~A~~aL~~Lc 616 (710)
+..+- .+|+.+.+.+. +..++..++.+|.||+..++.+..+.. .|+.++.+|..|+...|.+++.+|++|+
T Consensus 88 ~~~Ik--~~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~~~~l~~---~i~~ll~LL~~G~~~~k~~vLk~L~nLS 162 (254)
T PF04826_consen 88 QEQIK--MYIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDYHHMLAN---YIPDLLSLLSSGSEKTKVQVLKVLVNLS 162 (254)
T ss_pred HHHHH--HHHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcchhhhHHh---hHHHHHHHHHcCChHHHHHHHHHHHHhc
Confidence 98773 36777777652 346788999999999998888777754 6999999999999999999999999999
Q ss_pred cCChHHHHHHHhCCchHHHHHHhhcC-CHHHHHHHHHHHHHhhhccCCc
Q 036199 617 SQRDQYCKLVMNEGVIPSLVKISVYG-NDKAKVSALELRRLLRDVAYSV 664 (710)
Q Consensus 617 ~~~~~~~~~v~~~G~v~~Lv~L~~~g-t~~~k~kA~~LL~~l~~~~~~~ 664 (710)
.++ .....++.++++..++.|.... +...-..+..+...+.++...+
T Consensus 163 ~np-~~~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~~~~~ 210 (254)
T PF04826_consen 163 ENP-DMTRELLSAQVLSSFLSLFNSSESKENLLRVLTFFENINENIKKE 210 (254)
T ss_pred cCH-HHHHHHHhccchhHHHHHHccCCccHHHHHHHHHHHHHHHhhCcc
Confidence 988 6778888888999999998776 4556788888888887665544
|
|
| >KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures] | Back alignment and domain information |
|---|
Probab=99.26 E-value=3.9e-11 Score=136.34 Aligned_cols=207 Identities=17% Similarity=0.166 Sum_probs=171.4
Q ss_pred chHHHHHHhccCcH--HHHHHHHHHHhc-cCchhhHHHhhhCcHHHHHHhhcCCCHHHHHHHHHHHHHhcc---Cccccc
Q 036199 469 LFSLLASFLHSAAA--TEETLAILVALS-SYAYFISKIVASGALASILNMLDSPNGKFQELAIKILHNLSS---DVDIQS 542 (710)
Q Consensus 469 aI~~LV~lL~s~~~--~~~Aa~~L~~Ls-~~~~nk~~I~~~GaI~~LV~LL~~~~~~~~~~A~~aL~nLs~---~~en~~ 542 (710)
-+|..+.+|.+... +.+|++-|..+| .+.+.|..+-+.|+|+.||.+|++.+.+++..|++||.||.. +++|+.
T Consensus 234 ~lpe~i~mL~~q~~~~qsnaaaylQHlcfgd~~ik~~vrqlggI~kLv~Ll~~~~~evq~~acgaLRNLvf~~~~~~NKl 313 (717)
T KOG1048|consen 234 TLPEVISMLMSQDPSVQSNAAAYLQHLCFGDNKIKSRVRQLGGIPKLVALLDHRNDEVQRQACGALRNLVFGKSTDSNKL 313 (717)
T ss_pred ccHHHHHHHhccChhhhHHHHHHHHHHHhhhHHHHHHHHHhccHHHHHHHhcCCcHHHHHHHHHHHHhhhcccCCcccch
Confidence 46778888887765 358888888998 456778888889999999999999999999999999999996 346899
Q ss_pred ccccccchhchHHhhc---CchHHHHHHHHHHHHhcCcchHHHHHhhcCChHHHHHHhhc-C-------------CHHHH
Q 036199 543 HIAPSEFLPKLVPFLK---DATLAVSCLVILKNMCNTEHARVCVVETSGCLPSVAELLEI-G-------------SEEDQ 605 (710)
Q Consensus 543 ~iv~aG~V~~Lv~lL~---~~~~~~~al~iL~nLa~~~e~r~~i~~~~g~I~~Lv~lL~~-~-------------s~~~k 605 (710)
.|.+.|+|+.|+.+|. |.++.+...++|+||++++.-+..|+.+ ++..|...+-. - +...-
T Consensus 314 ai~~~~Gv~~l~~~Lr~t~D~ev~e~iTg~LWNLSS~D~lK~~ii~~--al~tLt~~vI~P~Sgw~~~~~~~~~~~~~vf 391 (717)
T KOG1048|consen 314 AIKELNGVPTLVRLLRHTQDDEVRELITGILWNLSSNDALKMLIITS--ALSTLTDNVIIPHSGWEEEPAPRKAEDSTVF 391 (717)
T ss_pred hhhhcCChHHHHHHHHhhcchHHHHHHHHHHhcccchhHHHHHHHHH--HHHHHHHhhcccccccCCCCcccccccceee
Confidence 9999999999999995 6789999999999999999999888873 67777775532 1 13455
Q ss_pred HHHHHHHHHHhcCChHHHHHHHh-CCchHHHHHHhh------cCCHHHHHHHHHHHHHhhhccCCccccCCCCCccCCC
Q 036199 606 EHAVAILLCLCSQRDQYCKLVMN-EGVIPSLVKISV------YGNDKAKVSALELRRLLRDVAYSVEQQCFGSEIDTSK 677 (710)
Q Consensus 606 e~A~~aL~~Lc~~~~~~~~~v~~-~G~v~~Lv~L~~------~gt~~~k~kA~~LL~~l~~~~~~~~~~~~~~~~~~~~ 677 (710)
.++.++|.|+++.+.+.++.+.+ .|.|..|+...+ ..+.+.-++|..+|++|+..-+.+.++.-.+.+....
T Consensus 392 ~n~tgcLRNlSs~~~eaR~~mr~c~GLIdaL~~~iq~~i~~~~~d~K~VENcvCilRNLSYrl~~Evp~~~~~~~~~~~ 470 (717)
T KOG1048|consen 392 RNVTGCLRNLSSAGQEAREQMRECDGLIDALLFSIQTAIQKSDLDSKSVENCVCILRNLSYRLEAEVPPKYRQVLANIA 470 (717)
T ss_pred ehhhhhhccccchhHHHHHHHhhccchHHHHHHHHHHHHHhccccchhHHHHHHHHhhcCchhhhhcCHhhhhHhhccc
Confidence 79999999999977677776665 588999987754 4678889999999999999999988877777765444
|
|
| >PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function | Back alignment and domain information |
|---|
Probab=99.24 E-value=1.6e-10 Score=119.62 Aligned_cols=227 Identities=18% Similarity=0.172 Sum_probs=179.3
Q ss_pred cccCCcHHHHHHHhhccccCCCHHHHHHHHHHHHHHhccCCCCCccccccchHHHHHHhccCcHH--HHHHHHHHHhccC
Q 036199 419 LSSTNFVEPLIRFLRDARDLHDSRAQRIGCRLLLAFVSKNRSGIPYLNEDLFSLLASFLHSAAAT--EETLAILVALSSY 496 (710)
Q Consensus 419 I~~~G~I~~LV~lL~s~~~~~d~~~q~~A~~~L~nL~~~~~~k~~i~~~gaI~~LV~lL~s~~~~--~~Aa~~L~~Ls~~ 496 (710)
+.+++.++.|+.+|+.. .|+.+|+.+..++.+.+....++..+.+.|+++.+..+|.+++.. +.|+.+|.||+.+
T Consensus 8 ~l~~~~l~~Ll~lL~~t---~dp~i~e~al~al~n~aaf~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~ 84 (254)
T PF04826_consen 8 ILEAQELQKLLCLLEST---EDPFIQEKALIALGNSAAFPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVN 84 (254)
T ss_pred CcCHHHHHHHHHHHhcC---CChHHHHHHHHHHHhhccChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCC
Confidence 35677889999999863 689999999999999988888899999999999999999998864 6899999999999
Q ss_pred chhhHHHhhhCcHHHHHHhhcCC--CHHHHHHHHHHHHHhccCcccccccccccchhchHHhhcC--chHHHHHHHHHHH
Q 036199 497 AYFISKIVASGALASILNMLDSP--NGKFQELAIKILHNLSSDVDIQSHIAPSEFLPKLVPFLKD--ATLAVSCLVILKN 572 (710)
Q Consensus 497 ~~nk~~I~~~GaI~~LV~LL~~~--~~~~~~~A~~aL~nLs~~~en~~~iv~aG~V~~Lv~lL~~--~~~~~~al~iL~n 572 (710)
.+|+..|-. .|+.+.+...+. +..++..++++|.||+..++++..+. ++|+.|+.+|.. ..++..++.+|.|
T Consensus 85 ~en~~~Ik~--~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~~~~l~--~~i~~ll~LL~~G~~~~k~~vLk~L~n 160 (254)
T PF04826_consen 85 DENQEQIKM--YIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDYHHMLA--NYIPDLLSLLSSGSEKTKVQVLKVLVN 160 (254)
T ss_pred hhhHHHHHH--HHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcchhhhHH--hhHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 999998854 577777765443 67899999999999998888877664 589999999954 5678899999999
Q ss_pred HhcCcchHHHHHhhcCChHHHHHHhhcC-CHHHHHHHHHHHHHHhcCChHH-HHHHHhCCchHHHHHHhhcCCHHHHHHH
Q 036199 573 MCNTEHARVCVVETSGCLPSVAELLEIG-SEEDQEHAVAILLCLCSQRDQY-CKLVMNEGVIPSLVKISVYGNDKAKVSA 650 (710)
Q Consensus 573 La~~~e~r~~i~~~~g~I~~Lv~lL~~~-s~~~ke~A~~aL~~Lc~~~~~~-~~~v~~~G~v~~Lv~L~~~gt~~~k~kA 650 (710)
|+.++.....+.. +++++.++.++... +.+....++....++..+-... ...+....--.+|+.+.... ++-|
T Consensus 161 LS~np~~~~~Ll~-~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~~~~~~~~~~~~~~~~~~L~~~~~e~----~~~~ 235 (254)
T PF04826_consen 161 LSENPDMTRELLS-AQVLSSFLSLFNSSESKENLLRVLTFFENINENIKKEAYVFVQDDFSEDSLFSLFGES----SQLA 235 (254)
T ss_pred hccCHHHHHHHHh-ccchhHHHHHHccCCccHHHHHHHHHHHHHHHhhCcccceeccccCCchhHHHHHccH----HHHH
Confidence 9999999888888 68899999999874 6777889999999986544221 12222344455666444322 2445
Q ss_pred HHHHHHh
Q 036199 651 LELRRLL 657 (710)
Q Consensus 651 ~~LL~~l 657 (710)
.+|..+.
T Consensus 236 ~~l~~l~ 242 (254)
T PF04826_consen 236 KKLQALA 242 (254)
T ss_pred HHHHHHH
Confidence 5555544
|
|
| >PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells | Back alignment and domain information |
|---|
Probab=99.11 E-value=7.8e-09 Score=118.06 Aligned_cols=266 Identities=18% Similarity=0.191 Sum_probs=208.9
Q ss_pred hhhcCCCHHHHHHHHHHHHHHHccCcccchhcccCCcHHHHHHHhhccccCCCHHHHHHHHHHHHHHhccCCCCCccccc
Q 036199 388 SRLTELNWDCQCKVIEDYETRLEHDNQVSHSLSSTNFVEPLIRFLRDARDLHDSRAQRIGCRLLLAFVSKNRSGIPYLNE 467 (710)
Q Consensus 388 ~~L~s~~~e~q~~Al~~L~~Lak~~~~~r~~I~~~G~I~~LV~lL~s~~~~~d~~~q~~A~~~L~nL~~~~~~k~~i~~~ 467 (710)
..|...+..++.-++..|..++..+......+.+.+.++.++..|.+ +|..+...|+.+|.+++.+...-..+...
T Consensus 84 ~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~~i~~~L~~----~d~~Va~~A~~~L~~l~~~~~~~~~l~~~ 159 (503)
T PF10508_consen 84 RGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDNELLPLIIQCLRD----PDLSVAKAAIKALKKLASHPEGLEQLFDS 159 (503)
T ss_pred HHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHHHHHHHHcC----CcHHHHHHHHHHHHHHhCCchhHHHHhCc
Confidence 56777889999999999999998887777788899999999999987 78999999999999998776555556688
Q ss_pred cchHHHHHHhccCcH--HHHHHHHHHHhc-cCchhhHHHhhhCcHHHHHHhhcCCCHHHHHHHHHHHHHhccCccccccc
Q 036199 468 DLFSLLASFLHSAAA--TEETLAILVALS-SYAYFISKIVASGALASILNMLDSPNGKFQELAIKILHNLSSDVDIQSHI 544 (710)
Q Consensus 468 gaI~~LV~lL~s~~~--~~~Aa~~L~~Ls-~~~~nk~~I~~~GaI~~LV~LL~~~~~~~~~~A~~aL~nLs~~~en~~~i 544 (710)
+.+..|..++...+. +-.+..++.+++ ..++....+..+|.++.++..|+++|.-++.+|+.+|..|+..+.+...+
T Consensus 160 ~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~~~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~~~~g~~yL 239 (503)
T PF10508_consen 160 NLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAAEAVVNSGLLDLLLKELDSDDILVQLNALELLSELAETPHGLQYL 239 (503)
T ss_pred chHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHHHHHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHcChhHHHHH
Confidence 889999999988443 346777788887 55677777778999999999999999999999999999999999999999
Q ss_pred ccccchhchHHhhcC----c---h-HHHHHHHHHHHHhcCcchHHHHHhhcCChHHHHHHhhcCCHHHHHHHHHHHHHHh
Q 036199 545 APSEFLPKLVPFLKD----A---T-LAVSCLVILKNMCNTEHARVCVVETSGCLPSVAELLEIGSEEDQEHAVAILLCLC 616 (710)
Q Consensus 545 v~aG~V~~Lv~lL~~----~---~-~~~~al~iL~nLa~~~e~r~~i~~~~g~I~~Lv~lL~~~s~~~ke~A~~aL~~Lc 616 (710)
.+.|+++.|+.++.+ + . ..--.+...++++..... ..+...+..+..|.+++..+++..+..|+.+|..+|
T Consensus 240 ~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~la~~~~~-~v~~~~p~~~~~l~~~~~s~d~~~~~~A~dtlg~ig 318 (503)
T PF10508_consen 240 EQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFGNLARVSPQ-EVLELYPAFLERLFSMLESQDPTIREVAFDTLGQIG 318 (503)
T ss_pred HhCCHHHHHHHHHhccccCCcccchhhhhHHHHHHHHHhcChH-HHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHh
Confidence 999999999999933 2 1 133345677788875222 222222445666777778899999999999999999
Q ss_pred cCChHHHHHHHhCC-chH----HHHHHhhcCCHHHHHHHHHHHHHhh
Q 036199 617 SQRDQYCKLVMNEG-VIP----SLVKISVYGNDKAKVSALELRRLLR 658 (710)
Q Consensus 617 ~~~~~~~~~v~~~G-~v~----~Lv~L~~~gt~~~k~kA~~LL~~l~ 658 (710)
+.......+....| .++ .......+++...|.++...|..+=
T Consensus 319 st~~G~~~L~~~~~~~~~~~l~~~~~~~~~~~~~lk~r~l~al~~il 365 (503)
T PF10508_consen 319 STVEGKQLLLQKQGPAMKHVLKAIGDAIKSGSTELKLRALHALASIL 365 (503)
T ss_pred CCHHHHHHHHhhcchHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHH
Confidence 87744333324443 444 4444567788889999988888664
|
26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding |
| >cd00020 ARM Armadillo/beta-catenin-like repeats | Back alignment and domain information |
|---|
Probab=99.11 E-value=5.2e-10 Score=101.44 Aligned_cols=115 Identities=28% Similarity=0.418 Sum_probs=102.9
Q ss_pred HHhhhCcHHHHHHhhcCCCHHHHHHHHHHHHHhccC-cccccccccccchhchHHhhcC--chHHHHHHHHHHHHhcCcc
Q 036199 502 KIVASGALASILNMLDSPNGKFQELAIKILHNLSSD-VDIQSHIAPSEFLPKLVPFLKD--ATLAVSCLVILKNMCNTEH 578 (710)
Q Consensus 502 ~I~~~GaI~~LV~LL~~~~~~~~~~A~~aL~nLs~~-~en~~~iv~aG~V~~Lv~lL~~--~~~~~~al~iL~nLa~~~e 578 (710)
.+.+.|+++.|+++|.+++...+..|+.+|.+++.+ ++++..+++.|+++.|+++|.+ +.++..|+++|++|+.+..
T Consensus 2 ~~~~~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~ 81 (120)
T cd00020 2 AVIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPE 81 (120)
T ss_pred hHHHcCChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcH
Confidence 456889999999999999999999999999999987 7888899999999999999965 5789999999999999764
Q ss_pred -hHHHHHhhcCChHHHHHHhhcCCHHHHHHHHHHHHHHhc
Q 036199 579 -ARVCVVETSGCLPSVAELLEIGSEEDQEHAVAILLCLCS 617 (710)
Q Consensus 579 -~r~~i~~~~g~I~~Lv~lL~~~s~~~ke~A~~aL~~Lc~ 617 (710)
.+..+.. .|+++.|++++..++...++.|+++|.+||.
T Consensus 82 ~~~~~~~~-~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~~ 120 (120)
T cd00020 82 DNKLIVLE-AGGVPKLVNLLDSSNEDIQKNATGALSNLAS 120 (120)
T ss_pred HHHHHHHH-CCChHHHHHHHhcCCHHHHHHHHHHHHHhhC
Confidence 4455555 7999999999999999999999999999974
|
An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. |
| >KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.09 E-value=4.2e-10 Score=120.49 Aligned_cols=197 Identities=16% Similarity=0.280 Sum_probs=164.1
Q ss_pred HHHHHHHHHHHHHHhccCCCCCccccccchHHHHHHhccCcHH--HHHHHHHHHhccCchhhHHHhhhCcHHHHHHhhcC
Q 036199 441 SRAQRIGCRLLLAFVSKNRSGIPYLNEDLFSLLASFLHSAAAT--EETLAILVALSSYAYFISKIVASGALASILNMLDS 518 (710)
Q Consensus 441 ~~~q~~A~~~L~nL~~~~~~k~~i~~~gaI~~LV~lL~s~~~~--~~Aa~~L~~Ls~~~~nk~~I~~~GaI~~LV~LL~~ 518 (710)
....+.|+..|+|++.+-..-..+.....+..||+.|+..+.. ......|..||..++||..+++.|.|..|+++...
T Consensus 277 eqLLrva~ylLlNlAed~~~ElKMrrkniV~mLVKaLdr~n~~Ll~lv~~FLkKLSIf~eNK~~M~~~~iveKL~klfp~ 356 (791)
T KOG1222|consen 277 EQLLRVAVYLLLNLAEDISVELKMRRKNIVAMLVKALDRSNSSLLTLVIKFLKKLSIFDENKIVMEQNGIVEKLLKLFPI 356 (791)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHhHHHHHHHHHcccchHHHHHHHHHHHHhhhhccchHHHHhccHHHHHHHhcCC
Confidence 3455678889999988765555556788999999999877753 46677788999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhccCcccccccccccchhchHHhhcCchHHHHHHHHHHHHhcCcchHHHHHhhcCChHHHHHHhh
Q 036199 519 PNGKFQELAIKILHNLSSDVDIQSHIAPSEFLPKLVPFLKDATLAVSCLVILKNMCNTEHARVCVVETSGCLPSVAELLE 598 (710)
Q Consensus 519 ~~~~~~~~A~~aL~nLs~~~en~~~iv~aG~V~~Lv~lL~~~~~~~~al~iL~nLa~~~e~r~~i~~~~g~I~~Lv~lL~ 598 (710)
..++.++..+..|+|||.+..++..|+..|.+|.|+.+|.+..-..-|+.+|..++..+..+..+.. ..||+.+.+.+-
T Consensus 357 ~h~dL~~~tl~LlfNlSFD~glr~KMv~~GllP~l~~ll~~d~~~~iA~~~lYh~S~dD~~K~Mfay-Tdci~~lmk~v~ 435 (791)
T KOG1222|consen 357 QHPDLRKATLMLLFNLSFDSGLRPKMVNGGLLPHLASLLDSDTKHGIALNMLYHLSCDDDAKAMFAY-TDCIKLLMKDVL 435 (791)
T ss_pred CCHHHHHHHHHHhhhccccccccHHHhhccchHHHHHHhCCcccchhhhhhhhhhccCcHHHHHHHH-HHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999998876666789999999999998888887 589999999877
Q ss_pred cCCHHHHHHHHHH-HHHHhcCChHHHHHHHhCCchHHHHHHh
Q 036199 599 IGSEEDQEHAVAI-LLCLCSQRDQYCKLVMNEGVIPSLVKIS 639 (710)
Q Consensus 599 ~~s~~~ke~A~~a-L~~Lc~~~~~~~~~v~~~G~v~~Lv~L~ 639 (710)
.++...-.-++-+ -.+||.+. .+.+.+.+..++..|++..
T Consensus 436 ~~~~~~vdl~lia~ciNl~lnk-RNaQlvceGqgL~~LM~ra 476 (791)
T KOG1222|consen 436 SGTGSEVDLALIALCINLCLNK-RNAQLVCEGQGLDLLMERA 476 (791)
T ss_pred hcCCceecHHHHHHHHHHHhcc-ccceEEecCcchHHHHHHH
Confidence 6544433333333 37888877 6778888877788887654
|
|
| >cd00020 ARM Armadillo/beta-catenin-like repeats | Back alignment and domain information |
|---|
Probab=99.03 E-value=4e-09 Score=95.63 Aligned_cols=115 Identities=24% Similarity=0.298 Sum_probs=105.6
Q ss_pred ccccccchhchHHhhcCc--hHHHHHHHHHHHHhcC-cchHHHHHhhcCChHHHHHHhhcCCHHHHHHHHHHHHHHhcCC
Q 036199 543 HIAPSEFLPKLVPFLKDA--TLAVSCLVILKNMCNT-EHARVCVVETSGCLPSVAELLEIGSEEDQEHAVAILLCLCSQR 619 (710)
Q Consensus 543 ~iv~aG~V~~Lv~lL~~~--~~~~~al~iL~nLa~~-~e~r~~i~~~~g~I~~Lv~lL~~~s~~~ke~A~~aL~~Lc~~~ 619 (710)
.+++.|+++.|+++|.++ .+...++.+|.+++.. ++.+..+.+ .|+++.|+.+|...+++.+++|+++|.+|+...
T Consensus 2 ~~~~~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~-~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~ 80 (120)
T cd00020 2 AVIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVE-AGGLPALVQLLKSEDEEVVKAALWALRNLAAGP 80 (120)
T ss_pred hHHHcCChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHH-CCChHHHHHHHhCCCHHHHHHHHHHHHHHccCc
Confidence 467889999999999665 6799999999999997 888888888 799999999999999999999999999999998
Q ss_pred hHHHHHHHhCCchHHHHHHhhcCCHHHHHHHHHHHHHhh
Q 036199 620 DQYCKLVMNEGVIPSLVKISVYGNDKAKVSALELRRLLR 658 (710)
Q Consensus 620 ~~~~~~v~~~G~v~~Lv~L~~~gt~~~k~kA~~LL~~l~ 658 (710)
+.....+.+.|+++.|+.++.+++.++++.|.++|..|.
T Consensus 81 ~~~~~~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 81 EDNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLA 119 (120)
T ss_pred HHHHHHHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhh
Confidence 888888999999999999999999999999999998764
|
An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. |
| >PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional | Back alignment and domain information |
|---|
Probab=99.02 E-value=1.9e-10 Score=111.84 Aligned_cols=62 Identities=27% Similarity=0.388 Sum_probs=53.8
Q ss_pred cCCCCCcccccCCccccCCceecCCCCccchhhHHHHhhh---------------CCCCCCCCCCccCCCCCcccHH
Q 036199 262 RAIIPEVFKCPLSLRLMYDPVVIESGQTFERMWIQKWFEE---------------GNHTCPKTKMKLVCQSLTPNTA 323 (710)
Q Consensus 262 ~~~~p~~f~CPI~~~~m~DPV~~~~G~ty~r~~I~~w~~~---------------g~~~cP~t~~~l~~~~l~pN~~ 323 (710)
.....++|.||||++.++|||++.|||.||+.||.+|+.. +...||.|+.++....++|.+.
T Consensus 12 ~~~~~~~~~CpICld~~~dPVvT~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~~~LvPiyg 88 (193)
T PLN03208 12 LVDSGGDFDCNICLDQVRDPVVTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSEATLVPIYG 88 (193)
T ss_pred eccCCCccCCccCCCcCCCcEEcCCCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCChhcEEEeec
Confidence 3445678999999999999999999999999999999742 2468999999999999999864
|
|
| >PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A | Back alignment and domain information |
|---|
Probab=99.01 E-value=1.9e-10 Score=85.11 Aligned_cols=39 Identities=33% Similarity=0.831 Sum_probs=30.8
Q ss_pred ccCCccccCCceecCCCCccchhhHHHHhhhCC---CCCCCC
Q 036199 271 CPLSLRLMYDPVVIESGQTFERMWIQKWFEEGN---HTCPKT 309 (710)
Q Consensus 271 CPI~~~~m~DPV~~~~G~ty~r~~I~~w~~~g~---~~cP~t 309 (710)
||||+++|+|||+++|||+||+.||++|++... ..||.|
T Consensus 1 CpiC~~~~~~Pv~l~CGH~FC~~Cl~~~~~~~~~~~~~CP~C 42 (42)
T PF15227_consen 1 CPICLDLFKDPVSLPCGHSFCRSCLERLWKEPSGSGFSCPEC 42 (42)
T ss_dssp ETTTTSB-SSEEE-SSSSEEEHHHHHHHHCCSSSST---SSS
T ss_pred CCccchhhCCccccCCcCHHHHHHHHHHHHccCCcCCCCcCC
Confidence 899999999999999999999999999997532 468875
|
|
| >KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.00 E-value=1.5e-09 Score=128.05 Aligned_cols=219 Identities=19% Similarity=0.142 Sum_probs=178.0
Q ss_pred HHHHHHHHHHHHHccCcccchhc-ccCCcHHHHHHHhhccccCCCHHHHHHHHHHHHHHhc--cCCCCCccccccchHHH
Q 036199 397 CQCKVIEDYETRLEHDNQVSHSL-SSTNFVEPLIRFLRDARDLHDSRAQRIGCRLLLAFVS--KNRSGIPYLNEDLFSLL 473 (710)
Q Consensus 397 ~q~~Al~~L~~Lak~~~~~r~~I-~~~G~I~~LV~lL~s~~~~~d~~~q~~A~~~L~nL~~--~~~~k~~i~~~gaI~~L 473 (710)
.++-|..+|.+|.-++..|+..+ ...|+++.+|..|.+ ...+.+..-+.+|.||+= +...|..+-+.|-+..|
T Consensus 367 LRrYa~MALTNLTFGDv~NKa~LCs~rgfMeavVAQL~s----~peeL~QV~AsvLRNLSWRAD~nmKkvLrE~GsVtaL 442 (2195)
T KOG2122|consen 367 LRRYAGMALTNLTFGDVANKATLCSQRGFMEAVVAQLIS----APEELLQVYASVLRNLSWRADSNMKKVLRETGSVTAL 442 (2195)
T ss_pred HHHHHHHHhhccccccccchhhhhhhhhHHHHHHHHHhc----ChHHHHHHHHHHHHhccccccccHHHHHHhhhhHHHH
Confidence 34556777888888888898877 568999999999987 334677777889999962 33446666678988888
Q ss_pred HHHhc---cCcHHHHHHHHHHHhc-cCchhhHHHhh-hCcHHHHHHhhc----CCCHHHHHHHHHHHHHhccC----ccc
Q 036199 474 ASFLH---SAAATEETLAILVALS-SYAYFISKIVA-SGALASILNMLD----SPNGKFQELAIKILHNLSSD----VDI 540 (710)
Q Consensus 474 V~lL~---s~~~~~~Aa~~L~~Ls-~~~~nk~~I~~-~GaI~~LV~LL~----~~~~~~~~~A~~aL~nLs~~----~en 540 (710)
+..-- +++.....+.+||||+ ..-+||..|.+ .|++..||.+|. +.+..+.+.|.++|.|.+++ .+.
T Consensus 443 a~~al~~~kEsTLKavLSALWNLSAHcteNKA~iCaVDGALaFLVg~LSY~~qs~tLaIIEsaGGILRNVSS~IAt~E~y 522 (2195)
T KOG2122|consen 443 AACALRNKKESTLKAVLSALWNLSAHCTENKAEICAVDGALAFLVGTLSYEGQSNTLAIIESAGGILRNVSSLIATCEDY 522 (2195)
T ss_pred HHHHHHhcccchHHHHHHHHhhhhhcccccchhhhcccchHHHHHhhccccCCcchhhhhhcCccHHHHHHhHhhccchH
Confidence 87642 2334468899999999 67899999996 799999999994 33567889999999999864 444
Q ss_pred ccccccccchhchHHhhcCch--HHHHHHHHHHHHhc-CcchHHHHHhhcCChHHHHHHhhcCCHHHHHHHHHHHHHHhc
Q 036199 541 QSHIAPSEFLPKLVPFLKDAT--LAVSCLVILKNMCN-TEHARVCVVETSGCLPSVAELLEIGSEEDQEHAVAILLCLCS 617 (710)
Q Consensus 541 ~~~iv~aG~V~~Lv~lL~~~~--~~~~al~iL~nLa~-~~e~r~~i~~~~g~I~~Lv~lL~~~s~~~ke~A~~aL~~Lc~ 617 (710)
+..+.+.+++..|+++|.+.. ++.++|++||||+. +++.++.+.+ .|+|+.|..++.+....+-+-++++|.||-.
T Consensus 523 RQILR~~NCLq~LLQ~LKS~SLTiVSNaCGTLWNLSAR~p~DQq~LwD-~gAv~mLrnLIhSKhkMIa~GSaaALrNLln 601 (2195)
T KOG2122|consen 523 RQILRRHNCLQTLLQHLKSHSLTIVSNACGTLWNLSARSPEDQQMLWD-DGAVPMLRNLIHSKHKMIAMGSAAALRNLLN 601 (2195)
T ss_pred HHHHHHhhHHHHHHHHhhhcceEEeecchhhhhhhhcCCHHHHHHHHh-cccHHHHHHHHhhhhhhhhhhHHHHHHHHhc
Confidence 555678999999999997764 58899999999976 8999999998 7999999999999888889999999999987
Q ss_pred CCh
Q 036199 618 QRD 620 (710)
Q Consensus 618 ~~~ 620 (710)
+.+
T Consensus 602 ~RP 604 (2195)
T KOG2122|consen 602 FRP 604 (2195)
T ss_pred CCc
Confidence 774
|
|
| >KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.98 E-value=1.4e-08 Score=109.05 Aligned_cols=236 Identities=17% Similarity=0.171 Sum_probs=180.1
Q ss_pred HHHHHHHHHccCcccchhcccCCcHHHHHHHhhccccCCCHHHHHHHHHHHHHHhccCCCCCccccccchHHHHHHhccC
Q 036199 401 VIEDYETRLEHDNQVSHSLSSTNFVEPLIRFLRDARDLHDSRAQRIGCRLLLAFVSKNRSGIPYLNEDLFSLLASFLHSA 480 (710)
Q Consensus 401 Al~~L~~Lak~~~~~r~~I~~~G~I~~LV~lL~s~~~~~d~~~q~~A~~~L~nL~~~~~~k~~i~~~gaI~~LV~lL~s~ 480 (710)
.+.-|..|+- -.+|+..|.+.|.++.|+++... .+++.....+.+|+|++-+...+..++..|.+|.|+.+|++.
T Consensus 324 v~~FLkKLSI-f~eNK~~M~~~~iveKL~klfp~----~h~dL~~~tl~LlfNlSFD~glr~KMv~~GllP~l~~ll~~d 398 (791)
T KOG1222|consen 324 VIKFLKKLSI-FDENKIVMEQNGIVEKLLKLFPI----QHPDLRKATLMLLFNLSFDSGLRPKMVNGGLLPHLASLLDSD 398 (791)
T ss_pred HHHHHHHhhh-hccchHHHHhccHHHHHHHhcCC----CCHHHHHHHHHHhhhccccccccHHHhhccchHHHHHHhCCc
Confidence 3333444433 25688889999999999999977 788999999999999998888888889999999999999998
Q ss_pred cHHHHHHHHHHHhccCchhhHHHhhhCcHHHHHHhhcCCCHHHHHHHHHHH-HHhccCcccccccccccchhchHHh---
Q 036199 481 AATEETLAILVALSSYAYFISKIVASGALASILNMLDSPNGKFQELAIKIL-HNLSSDVDIQSHIAPSEFLPKLVPF--- 556 (710)
Q Consensus 481 ~~~~~Aa~~L~~Ls~~~~nk~~I~~~GaI~~LV~LL~~~~~~~~~~A~~aL-~nLs~~~en~~~iv~aG~V~~Lv~l--- 556 (710)
....-|..+|+.+|.+++.|..+.-..+|+.|.+.+-+++..-...++-++ .|||.+..|...+++..++..|++.
T Consensus 399 ~~~~iA~~~lYh~S~dD~~K~MfayTdci~~lmk~v~~~~~~~vdl~lia~ciNl~lnkRNaQlvceGqgL~~LM~ra~k 478 (791)
T KOG1222|consen 399 TKHGIALNMLYHLSCDDDAKAMFAYTDCIKLLMKDVLSGTGSEVDLALIALCINLCLNKRNAQLVCEGQGLDLLMERAIK 478 (791)
T ss_pred ccchhhhhhhhhhccCcHHHHHHHHHHHHHHHHHHHHhcCCceecHHHHHHHHHHHhccccceEEecCcchHHHHHHHhc
Confidence 877889999999999999999999999999999988766544444444444 4999999999988886666655442
Q ss_pred ---------h---c--C-----------------------chHHHHHHHHHHHHhcCcchHHHHHhhcCChHHHHHHhhc
Q 036199 557 ---------L---K--D-----------------------ATLAVSCLVILKNMCNTEHARVCVVETSGCLPSVAELLEI 599 (710)
Q Consensus 557 ---------L---~--~-----------------------~~~~~~al~iL~nLa~~~e~r~~i~~~~g~I~~Lv~lL~~ 599 (710)
+ + + +...-+|+++|+||.-.+-.-..|.+....||.+-..|..
T Consensus 479 ~~D~lLmK~vRniSqHeg~tqn~FidyvgdLa~i~~nd~~E~F~~EClGtlanL~v~dldw~~ilq~~~LvPw~k~~L~p 558 (791)
T KOG1222|consen 479 SRDLLLMKVVRNISQHEGATQNMFIDYVGDLAGIAKNDNSESFGLECLGTLANLKVTDLDWAKILQSENLVPWMKTQLQP 558 (791)
T ss_pred ccchHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHhhcccCCCCHHHHHhhccccHHHHHhhcC
Confidence 1 0 1 1134568999999998777777888778899999988887
Q ss_pred CCH--HHHHHHHHHHHHHhcCChHHHHHHHhCCchHHHHHHhhcC
Q 036199 600 GSE--EDQEHAVAILLCLCSQRDQYCKLVMNEGVIPSLVKISVYG 642 (710)
Q Consensus 600 ~s~--~~ke~A~~aL~~Lc~~~~~~~~~v~~~G~v~~Lv~L~~~g 642 (710)
|-. ...-..+-++ .-|.....+..++..+|+++.|++|++.+
T Consensus 559 ga~eddLvL~~vi~~-GT~a~d~~cA~Lla~a~~i~tlieLL~a~ 602 (791)
T KOG1222|consen 559 GADEDDLVLQIVIAC-GTMARDLDCARLLAPAKLIDTLIELLQAC 602 (791)
T ss_pred CccchhhhhHHHHHh-hhhhhhhHHHHHhCccccHHHHHHHHHhh
Confidence 522 2222222222 23444446777888899999999997654
|
|
| >KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.91 E-value=7.3e-10 Score=110.02 Aligned_cols=76 Identities=28% Similarity=0.420 Sum_probs=71.7
Q ss_pred cCCCCCcccccCCccccCCceecCCCCccchhhHHHHhhhCCCCCCCCCCccCCCCCcccHHHHHHHHHHHHHcCC
Q 036199 262 RAIIPEVFKCPLSLRLMYDPVVIESGQTFERMWIQKWFEEGNHTCPKTKMKLVCQSLTPNTAMKDLISKWCMNLCS 337 (710)
Q Consensus 262 ~~~~p~~f~CPI~~~~m~DPV~~~~G~ty~r~~I~~w~~~g~~~cP~t~~~l~~~~l~pN~~l~~~i~~w~~~~~~ 337 (710)
...+|+.++|.|+.+||+|||++++|.||+|..|..++..-.++.|+|+.+|+...++||++|+..|..|...|..
T Consensus 205 ~rEvpd~lcgkIt~el~~~pvi~psgIty~ra~I~Ehl~rvghfdpvtr~~Lte~q~ipN~alkevIa~fl~~n~w 280 (284)
T KOG4642|consen 205 KREVPDYLCGKITLELMREPVITPSGITYDRADIEEHLQRVGHFDPVTRWPLTEYQLIPNLALKEVIAAFLKENEW 280 (284)
T ss_pred cccccchhhhhhhHHhhcCCccCccccchhHHHHHHHHHHhccCCchhcccCCHHhhccchHHHHHHHHHHHhccc
Confidence 4578999999999999999999999999999999999998777899999999999999999999999999998864
|
|
| >TIGR00599 rad18 DNA repair protein rad18 | Back alignment and domain information |
|---|
Probab=98.88 E-value=1.9e-09 Score=117.06 Aligned_cols=70 Identities=14% Similarity=0.311 Sum_probs=63.4
Q ss_pred CCCCcccccCCccccCCceecCCCCccchhhHHHHhhhCCCCCCCCCCccCCCCCcccHHHHHHHHHHHHH
Q 036199 264 IIPEVFKCPLSLRLMYDPVVIESGQTFERMWIQKWFEEGNHTCPKTKMKLVCQSLTPNTAMKDLISKWCMN 334 (710)
Q Consensus 264 ~~p~~f~CPI~~~~m~DPV~~~~G~ty~r~~I~~w~~~g~~~cP~t~~~l~~~~l~pN~~l~~~i~~w~~~ 334 (710)
.+-..|.||||+++|.+||+++|||+||..||..|+.. ...||.|+.++....+.+|+.|..+|+.|...
T Consensus 22 ~Le~~l~C~IC~d~~~~PvitpCgH~FCs~CI~~~l~~-~~~CP~Cr~~~~~~~Lr~N~~L~~iVe~~~~~ 91 (397)
T TIGR00599 22 PLDTSLRCHICKDFFDVPVLTSCSHTFCSLCIRRCLSN-QPKCPLCRAEDQESKLRSNWLVSEIVESFKNL 91 (397)
T ss_pred ccccccCCCcCchhhhCccCCCCCCchhHHHHHHHHhC-CCCCCCCCCccccccCccchHHHHHHHHHHHh
Confidence 45677999999999999999999999999999999975 45899999999888899999999999999653
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C | Back alignment and domain information |
|---|
Probab=98.77 E-value=2.7e-09 Score=84.19 Aligned_cols=44 Identities=34% Similarity=0.719 Sum_probs=32.1
Q ss_pred CcccccCCccccCCceec-CCCCccchhhHHHHhh-hCCCCCCCCC
Q 036199 267 EVFKCPLSLRLMYDPVVI-ESGQTFERMWIQKWFE-EGNHTCPKTK 310 (710)
Q Consensus 267 ~~f~CPI~~~~m~DPV~~-~~G~ty~r~~I~~w~~-~g~~~cP~t~ 310 (710)
-.|.||||+..|.|||.- .|||+|||++|..|+. .+...||++|
T Consensus 10 ~~~~CPiT~~~~~~PV~s~~C~H~fek~aI~~~i~~~~~~~CPv~G 55 (57)
T PF11789_consen 10 ISLKCPITLQPFEDPVKSKKCGHTFEKEAILQYIQRNGSKRCPVAG 55 (57)
T ss_dssp --SB-TTTSSB-SSEEEESSS--EEEHHHHHHHCTTTS-EE-SCCC
T ss_pred eccCCCCcCChhhCCcCcCCCCCeecHHHHHHHHHhcCCCCCCCCC
Confidence 368999999999999985 9999999999999994 4567799965
|
|
| >PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells | Back alignment and domain information |
|---|
Probab=98.67 E-value=8.8e-07 Score=101.31 Aligned_cols=207 Identities=19% Similarity=0.209 Sum_probs=167.8
Q ss_pred HHHHhhccccCCCHHHHHHHHHHHHHHhccCCCCCccccccchHHHHHHhccCcHH--HHHHHHHHHhccCchhhHH-Hh
Q 036199 428 LIRFLRDARDLHDSRAQRIGCRLLLAFVSKNRSGIPYLNEDLFSLLASFLHSAAAT--EETLAILVALSSYAYFISK-IV 504 (710)
Q Consensus 428 LV~lL~s~~~~~d~~~q~~A~~~L~nL~~~~~~k~~i~~~gaI~~LV~lL~s~~~~--~~Aa~~L~~Ls~~~~nk~~-I~ 504 (710)
++..|.. .+.+.-..++.+|..+........ ...+..+.|...|.+++.. ..++..|.++..+.+.... +.
T Consensus 43 lf~~L~~----~~~e~v~~~~~iL~~~l~~~~~~~--l~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~ 116 (503)
T PF10508_consen 43 LFDCLNT----SNREQVELICDILKRLLSALSPDS--LLPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLV 116 (503)
T ss_pred HHHHHhh----cChHHHHHHHHHHHHHHhccCHHH--HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhc
Confidence 6777765 355555666677777755432222 2577889999999988763 6888889888866665444 44
Q ss_pred hhCcHHHHHHhhcCCCHHHHHHHHHHHHHhccCcccccccccccchhchHHhhcC--chHHHHHHHHHHHHhcC-cchHH
Q 036199 505 ASGALASILNMLDSPNGKFQELAIKILHNLSSDVDIQSHIAPSEFLPKLVPFLKD--ATLAVSCLVILKNMCNT-EHARV 581 (710)
Q Consensus 505 ~~GaI~~LV~LL~~~~~~~~~~A~~aL~nLs~~~en~~~iv~aG~V~~Lv~lL~~--~~~~~~al~iL~nLa~~-~e~r~ 581 (710)
+.+.++.++.+|.+++..+.+.|+.+|.+|+.++.+...++..+.+..|..++.. ..++-.+..++.+++.. ++...
T Consensus 117 ~~~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~~~~~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~~ 196 (503)
T PF10508_consen 117 DNELLPLIIQCLRDPDLSVAKAAIKALKKLASHPEGLEQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAAE 196 (503)
T ss_pred CccHHHHHHHHHcCCcHHHHHHHHHHHHHHhCCchhHHHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHHH
Confidence 6899999999999999999999999999999998888888899999999999955 45678889999999874 55566
Q ss_pred HHHhhcCChHHHHHHhhcCCHHHHHHHHHHHHHHhcCChHHHHHHHhCCchHHHHHHhhcC
Q 036199 582 CVVETSGCLPSVAELLEIGSEEDQEHAVAILLCLCSQRDQYCKLVMNEGVIPSLVKISVYG 642 (710)
Q Consensus 582 ~i~~~~g~I~~Lv~lL~~~s~~~ke~A~~aL~~Lc~~~~~~~~~v~~~G~v~~Lv~L~~~g 642 (710)
.+.. .|.++.++..|.+.+.-.|.+|+.+|..|+..+ ...+.+.+.|+++.|+.++.+.
T Consensus 197 ~~~~-sgll~~ll~eL~~dDiLvqlnalell~~La~~~-~g~~yL~~~gi~~~L~~~l~~~ 255 (503)
T PF10508_consen 197 AVVN-SGLLDLLLKELDSDDILVQLNALELLSELAETP-HGLQYLEQQGIFDKLSNLLQDS 255 (503)
T ss_pred HHHh-ccHHHHHHHHhcCccHHHHHHHHHHHHHHHcCh-hHHHHHHhCCHHHHHHHHHhcc
Confidence 6666 899999999999999999999999999999944 7788899999999999986554
|
26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding |
| >PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane | Back alignment and domain information |
|---|
Probab=98.63 E-value=6.6e-07 Score=96.27 Aligned_cols=227 Identities=18% Similarity=0.188 Sum_probs=160.4
Q ss_pred CcHHHHHHHhhccccCCCHHHHHHHHHHHHHHhccCCCCCcccc-------ccchHHHHHHhccCcHH--HHHHHHHHHh
Q 036199 423 NFVEPLIRFLRDARDLHDSRAQRIGCRLLLAFVSKNRSGIPYLN-------EDLFSLLASFLHSAAAT--EETLAILVAL 493 (710)
Q Consensus 423 G~I~~LV~lL~s~~~~~d~~~q~~A~~~L~nL~~~~~~k~~i~~-------~gaI~~LV~lL~s~~~~--~~Aa~~L~~L 493 (710)
++...++.+|... ..+.++..+.+..+-.+..++..+..++. ...+.++++++.+++.. ..|+.+|..|
T Consensus 55 ~~~~~~l~lL~~~--~~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll~~~D~~i~~~a~~iLt~L 132 (312)
T PF03224_consen 55 QYASLFLNLLNKL--SSNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLLDRNDSFIQLKAAFILTSL 132 (312)
T ss_dssp -------HHHHHH-----HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH-S-SSHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHc--cCcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 4677888888763 25788899999999998766554443331 12678888888888753 5788888888
Q ss_pred ccCchhhHHHhhhCcHHHHHHhhcC----CCHHHHHHHHHHHHHhccCcccccccccccchhchHHhh------cCc---
Q 036199 494 SSYAYFISKIVASGALASILNMLDS----PNGKFQELAIKILHNLSSDVDIQSHIAPSEFLPKLVPFL------KDA--- 560 (710)
Q Consensus 494 s~~~~nk~~I~~~GaI~~LV~LL~~----~~~~~~~~A~~aL~nLs~~~en~~~iv~aG~V~~Lv~lL------~~~--- 560 (710)
......+..-...+.++.+++.|.+ .+.+.+..|+.+|.+|...++.+..+.+.|+++.|+.+| ...
T Consensus 133 l~~~~~~~~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~~R~~f~~~~~v~~l~~iL~~~~~~~~~~~~ 212 (312)
T PF03224_consen 133 LSQGPKRSEKLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKEYRQVFWKSNGVSPLFDILRKQATNSNSSGI 212 (312)
T ss_dssp HTSTTT--HHHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHHHHHHHHTHHHHHHHHHHHH---------HH
T ss_pred HHcCCccccchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcchhHHHHHhcCcHHHHHHHHHhhcccCCCCch
Confidence 7665555544446778888888864 344567899999999999999999999999999999999 222
Q ss_pred hHHHHHHHHHHHHhcCcchHHHHHhhcCChHHHHHHhhc-CCHHHHHHHHHHHHHHhcCChH-HHHHHHhCCchHHHHHH
Q 036199 561 TLAVSCLVILKNMCNTEHARVCVVETSGCLPSVAELLEI-GSEEDQEHAVAILLCLCSQRDQ-YCKLVMNEGVIPSLVKI 638 (710)
Q Consensus 561 ~~~~~al~iL~nLa~~~e~r~~i~~~~g~I~~Lv~lL~~-~s~~~ke~A~~aL~~Lc~~~~~-~~~~v~~~G~v~~Lv~L 638 (710)
.++-+++-+++.|+-+++....+.. .+.|+.|+++++. ...++-.-++++|.|+...... +...|+..|+.+.|-.|
T Consensus 213 Ql~Y~~ll~lWlLSF~~~~~~~~~~-~~~i~~L~~i~~~~~KEKvvRv~la~l~Nl~~~~~~~~~~~mv~~~~l~~l~~L 291 (312)
T PF03224_consen 213 QLQYQALLCLWLLSFEPEIAEELNK-KYLIPLLADILKDSIKEKVVRVSLAILRNLLSKAPKSNIELMVLCGLLKTLQNL 291 (312)
T ss_dssp HHHHHHHHHHHHHTTSHHHHHHHHT-TSHHHHHHHHHHH--SHHHHHHHHHHHHHTTSSSSTTHHHHHHHH-HHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHhc-cchHHHHHHHHHhcccchHHHHHHHHHHHHHhccHHHHHHHHHHccHHHHHHHH
Confidence 3588999999999999999999988 5799999999986 5888889999999999988843 88889999988888777
Q ss_pred hhc--CCHHHHHHHHH
Q 036199 639 SVY--GNDKAKVSALE 652 (710)
Q Consensus 639 ~~~--gt~~~k~kA~~ 652 (710)
... ++++..+--..
T Consensus 292 ~~rk~~Dedl~edl~~ 307 (312)
T PF03224_consen 292 SERKWSDEDLTEDLEF 307 (312)
T ss_dssp HSS--SSHHHHHHHHH
T ss_pred hcCCCCCHHHHHHHHH
Confidence 543 24555444333
|
ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A. |
| >PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A | Back alignment and domain information |
|---|
Probab=98.61 E-value=2e-08 Score=73.22 Aligned_cols=38 Identities=39% Similarity=0.829 Sum_probs=33.2
Q ss_pred ccCCccccCCc-eecCCCCccchhhHHHHhhhCCCCCCCC
Q 036199 271 CPLSLRLMYDP-VVIESGQTFERMWIQKWFEEGNHTCPKT 309 (710)
Q Consensus 271 CPI~~~~m~DP-V~~~~G~ty~r~~I~~w~~~g~~~cP~t 309 (710)
||||++.++|| |+++|||+|++.||++|+.. +..||.|
T Consensus 1 C~iC~~~~~~~~~~~~CGH~fC~~C~~~~~~~-~~~CP~C 39 (39)
T PF13923_consen 1 CPICLDELRDPVVVTPCGHSFCKECIEKYLEK-NPKCPVC 39 (39)
T ss_dssp ETTTTSB-SSEEEECTTSEEEEHHHHHHHHHC-TSB-TTT
T ss_pred CCCCCCcccCcCEECCCCCchhHHHHHHHHHC-cCCCcCC
Confidence 89999999999 57899999999999999997 6789975
|
|
| >PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane | Back alignment and domain information |
|---|
Probab=98.57 E-value=1.5e-06 Score=93.54 Aligned_cols=210 Identities=20% Similarity=0.213 Sum_probs=155.7
Q ss_pred CCCHHHHHHHHHHHHHHHccCcccchhccc------CCcHHHHHHHhhccccCCCHHHHHHHHHHHHHHhccCCCCCccc
Q 036199 392 ELNWDCQCKVIEDYETRLEHDNQVSHSLSS------TNFVEPLIRFLRDARDLHDSRAQRIGCRLLLAFVSKNRSGIPYL 465 (710)
Q Consensus 392 s~~~e~q~~Al~~L~~Lak~~~~~r~~I~~------~G~I~~LV~lL~s~~~~~d~~~q~~A~~~L~nL~~~~~~k~~i~ 465 (710)
+.+.+...-.+.-+-.+..+++.....+.. .....+++++|.+ +|.-++..|+.+|..+......+....
T Consensus 68 ~~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll~~----~D~~i~~~a~~iLt~Ll~~~~~~~~~~ 143 (312)
T PF03224_consen 68 SSNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLLDR----NDSFIQLKAAFILTSLLSQGPKRSEKL 143 (312)
T ss_dssp ---HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH-S-----SSHHHHHHHHHHHHHHHTSTTT--HHH
T ss_pred cCcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHhcC----CCHHHHHHHHHHHHHHHHcCCccccch
Confidence 346677777777778888777755554443 1267888888876 799999999999999976554333322
Q ss_pred cccchHHHHHHhccCcHH------HHHHHHHHHhccCchhhHHHhhhCcHHHHHHhh-----c--CCCHHHHHHHHHHHH
Q 036199 466 NEDLFSLLASFLHSAAAT------EETLAILVALSSYAYFISKIVASGALASILNML-----D--SPNGKFQELAIKILH 532 (710)
Q Consensus 466 ~~gaI~~LV~lL~s~~~~------~~Aa~~L~~Ls~~~~nk~~I~~~GaI~~LV~LL-----~--~~~~~~~~~A~~aL~ 532 (710)
..+.++.++.+|.+.... ..|+.+|.+|...+.+|..+.+.|+++.|+.+| . ..+.+.+-.++-++|
T Consensus 144 ~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~~R~~f~~~~~v~~l~~iL~~~~~~~~~~~~Ql~Y~~ll~lW 223 (312)
T PF03224_consen 144 VKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKEYRQVFWKSNGVSPLFDILRKQATNSNSSGIQLQYQALLCLW 223 (312)
T ss_dssp HHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHHHHHHHHTHHHHHHHHHHHH---------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcchhHHHHHhcCcHHHHHHHHHhhcccCCCCchhHHHHHHHHHH
Confidence 357889999998863321 578999999999999999999999999999999 2 234678899999999
Q ss_pred HhccCcccccccccccchhchHHhhcC---chHHHHHHHHHHHHhcCcc--hHHHHHhhcCChHHHHHHhhc---CCHHH
Q 036199 533 NLSSDVDIQSHIAPSEFLPKLVPFLKD---ATLAVSCLVILKNMCNTEH--ARVCVVETSGCLPSVAELLEI---GSEED 604 (710)
Q Consensus 533 nLs~~~en~~~iv~aG~V~~Lv~lL~~---~~~~~~al~iL~nLa~~~e--~r~~i~~~~g~I~~Lv~lL~~---~s~~~ 604 (710)
-||.+++....+.+.+.|+.|++++.+ +.+.+-++++|.||..... ....++. .| +..++..|.. ++++.
T Consensus 224 lLSF~~~~~~~~~~~~~i~~L~~i~~~~~KEKvvRv~la~l~Nl~~~~~~~~~~~mv~-~~-~l~~l~~L~~rk~~Dedl 301 (312)
T PF03224_consen 224 LLSFEPEIAEELNKKYLIPLLADILKDSIKEKVVRVSLAILRNLLSKAPKSNIELMVL-CG-LLKTLQNLSERKWSDEDL 301 (312)
T ss_dssp HHTTSHHHHHHHHTTSHHHHHHHHHHH--SHHHHHHHHHHHHHTTSSSSTTHHHHHHH-H--HHHHHHHHHSS--SSHHH
T ss_pred HHhcCHHHHHHHhccchHHHHHHHHHhcccchHHHHHHHHHHHHHhccHHHHHHHHHH-cc-HHHHHHHHhcCCCCCHHH
Confidence 999999999999999999999999943 5789999999999999666 7778877 34 5666666654 46666
Q ss_pred HHH
Q 036199 605 QEH 607 (710)
Q Consensus 605 ke~ 607 (710)
.+.
T Consensus 302 ~ed 304 (312)
T PF03224_consen 302 TED 304 (312)
T ss_dssp HHH
T ss_pred HHH
Confidence 554
|
ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A. |
| >KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.55 E-value=2.7e-06 Score=90.94 Aligned_cols=253 Identities=14% Similarity=0.150 Sum_probs=178.3
Q ss_pred HHHHHHHHHHHHccCcccchhcccCCcHHHHHHHhhccccCCCHH----HHHHHHHHHHHHhccCCCCCcccc-ccchHH
Q 036199 398 QCKVIEDYETRLEHDNQVSHSLSSTNFVEPLIRFLRDARDLHDSR----AQRIGCRLLLAFVSKNRSGIPYLN-EDLFSL 472 (710)
Q Consensus 398 q~~Al~~L~~Lak~~~~~r~~I~~~G~I~~LV~lL~s~~~~~d~~----~q~~A~~~L~nL~~~~~~k~~i~~-~gaI~~ 472 (710)
..+.+.++..-+.+++..+..+++.|.++.++.+++.-..-.+.. .-..++....-++..++.-..... ...+..
T Consensus 240 ~~eM~feila~~aend~Vkl~la~~gl~e~~~~lv~~~k~~t~k~d~~~l~k~~~el~vllltGDeSMq~L~~~p~~l~~ 319 (604)
T KOG4500|consen 240 IDEMIFEILAKAAENDLVKLSLAQNGLLEDSIDLVRNMKDFTKKTDMLNLFKRIAELDVLLLTGDESMQKLHADPQFLDF 319 (604)
T ss_pred hhhHHHHHHHHHhcCcceeeehhhcchHHHHHHHHHhcccccchHHHHHHHHhhhhHhhhhhcCchHHHHHhcCcHHHHH
Confidence 344556666666778888999999999999999997621111111 112222222222332322122223 337899
Q ss_pred HHHHhccCcHH--HHHHHHHHHhccCchhhHHHhhhCcHHHHHHhhc-----CCCHHHHHHHHHHHHHhccCcccccccc
Q 036199 473 LASFLHSAAAT--EETLAILVALSSYAYFISKIVASGALASILNMLD-----SPNGKFQELAIKILHNLSSDVDIQSHIA 545 (710)
Q Consensus 473 LV~lL~s~~~~--~~Aa~~L~~Ls~~~~nk~~I~~~GaI~~LV~LL~-----~~~~~~~~~A~~aL~nLs~~~en~~~iv 545 (710)
++.++.|.+.. ..++-++.|++..+++...+++.|.+..|+++|. .|+.+.+..++.||.||..--.||..++
T Consensus 320 ~~sw~~S~d~~l~t~g~LaigNfaR~D~~ci~~v~~~~~nkL~~~l~~~~~vdgnV~~qhA~lsALRnl~IPv~nka~~~ 399 (604)
T KOG4500|consen 320 LESWFRSDDSNLITMGSLAIGNFARRDDICIQLVQKDFLNKLISCLMQEKDVDGNVERQHACLSALRNLMIPVSNKAHFA 399 (604)
T ss_pred HHHHhcCCchhHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHhccccCCchhhcc
Confidence 99999988864 4677788899999999999999999999999993 4678999999999999999999999999
Q ss_pred cccchhchHHhh--cCchHHHHHHHHHHHHhcCcc-hHHHHHhhcCChHHHHHHhhcCCHH-HHHHHHHHHHHHhcCC--
Q 036199 546 PSEFLPKLVPFL--KDATLAVSCLVILKNMCNTEH-ARVCVVETSGCLPSVAELLEIGSEE-DQEHAVAILLCLCSQR-- 619 (710)
Q Consensus 546 ~aG~V~~Lv~lL--~~~~~~~~al~iL~nLa~~~e-~r~~i~~~~g~I~~Lv~lL~~~s~~-~ke~A~~aL~~Lc~~~-- 619 (710)
.+|.+.+++..+ ..|.++-+-++.|+.+-...+ ...++..+...+..||+.-++.+-. +--..-..|..+-.++
T Consensus 400 ~aGvteaIL~~lk~~~ppv~fkllgTlrM~~d~qe~~a~eL~kn~~l~ekLv~Wsks~D~aGv~gESnRll~~lIkHs~~ 479 (604)
T KOG4500|consen 400 PAGVTEAILLQLKLASPPVTFKLLGTLRMIRDSQEYIACELAKNPELFEKLVDWSKSPDFAGVAGESNRLLLGLIKHSKY 479 (604)
T ss_pred ccchHHHHHHHHHhcCCcchHHHHHHHHHHHhchHHHHHHHhcCHHHHHHHHHhhhCCccchhhhhhhHHHHHHHHhhHh
Confidence 999999999998 457888888888888877655 4455565555667777766665443 3444556666666664
Q ss_pred hHHHHHHHhCCchHHHHHHhhcCCHHHHHHH
Q 036199 620 DQYCKLVMNEGVIPSLVKISVYGNDKAKVSA 650 (710)
Q Consensus 620 ~~~~~~v~~~G~v~~Lv~L~~~gt~~~k~kA 650 (710)
.+....+.+.|++..++.+.....--.+..|
T Consensus 480 kdv~~tvpksg~ik~~Vsm~t~~hi~mqnEa 510 (604)
T KOG4500|consen 480 KDVILTVPKSGGIKEKVSMFTKNHINMQNEA 510 (604)
T ss_pred hhhHhhccccccHHHHHHHHHHhhHHHhHHH
Confidence 3455667788888888777655544444333
|
|
| >PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A | Back alignment and domain information |
|---|
Probab=98.49 E-value=5.3e-08 Score=72.16 Aligned_cols=36 Identities=28% Similarity=0.675 Sum_probs=23.3
Q ss_pred ccCCccccCC----ceecCCCCccchhhHHHHhhhC---CCCCC
Q 036199 271 CPLSLRLMYD----PVVIESGQTFERMWIQKWFEEG---NHTCP 307 (710)
Q Consensus 271 CPI~~~~m~D----PV~~~~G~ty~r~~I~~w~~~g---~~~cP 307 (710)
||||.+ |.+ |++++||||||+.||++|+..+ ...||
T Consensus 1 CpIc~e-~~~~~n~P~~L~CGH~~c~~cl~~l~~~~~~~~~kCP 43 (43)
T PF13445_consen 1 CPICKE-FSTEENPPMVLPCGHVFCKDCLQKLSKKSDRNRFKCP 43 (43)
T ss_dssp -TTT-----TTSS-EEE-SSS-EEEHHHHHHHHHH-S-S-B--T
T ss_pred CCcccc-ccCCCCCCEEEeCccHHHHHHHHHHHhcCCCCeeeCc
Confidence 999999 999 9999999999999999999854 45576
|
|
| >KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.46 E-value=7.9e-06 Score=93.60 Aligned_cols=246 Identities=19% Similarity=0.234 Sum_probs=183.6
Q ss_pred hhhcCC-CHHHHHHHHHHHHHHH-ccCcccchhcccCCcHHHHHHHhhccccCCCHHHHHHHHHHHHHHhc-cCCCCCcc
Q 036199 388 SRLTEL-NWDCQCKVIEDYETRL-EHDNQVSHSLSSTNFVEPLIRFLRDARDLHDSRAQRIGCRLLLAFVS-KNRSGIPY 464 (710)
Q Consensus 388 ~~L~s~-~~e~q~~Al~~L~~La-k~~~~~r~~I~~~G~I~~LV~lL~s~~~~~d~~~q~~A~~~L~nL~~-~~~~k~~i 464 (710)
..|... ++..|.+|+.+|..+. -.+++.-..+--.-++|.||.+|+.. .+.+++-.|+.+|.++.. -.+.-..+
T Consensus 174 ~gL~~~~Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E---~n~DIMl~AcRaltyl~evlP~S~a~v 250 (1051)
T KOG0168|consen 174 QGLQAESDESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHE---HNFDIMLLACRALTYLCEVLPRSSAIV 250 (1051)
T ss_pred HhccccCChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhcc---ccHHHHHHHHHHHHHHHhhccchhhee
Confidence 444443 7788899999987554 44555544444567899999999874 679999999999999965 34555667
Q ss_pred ccccchHHHHHHhccCc---HHHHHHHHHHHhccCchhhHHHhhhCcHHHHHHhhcCCCHHHHHHHHHHHHHhccC--cc
Q 036199 465 LNEDLFSLLASFLHSAA---ATEETLAILVALSSYAYFISKIVASGALASILNMLDSPNGKFQELAIKILHNLSSD--VD 539 (710)
Q Consensus 465 ~~~gaI~~LV~lL~s~~---~~~~Aa~~L~~Ls~~~~nk~~I~~~GaI~~LV~LL~~~~~~~~~~A~~aL~nLs~~--~e 539 (710)
++.++||.|+.-|..=. ..|.++.+|..+|..+ -..|.++|+|...+..|+==+..+++.|+.+-.|.|.. ++
T Consensus 251 V~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H--~~AiL~AG~l~a~LsylDFFSi~aQR~AlaiaaN~Cksi~sd 328 (1051)
T KOG0168|consen 251 VDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRH--PKAILQAGALSAVLSYLDFFSIHAQRVALAIAANCCKSIRSD 328 (1051)
T ss_pred ecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhc--cHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 89999999998665322 2478899998888543 35677899999999999777889999999999999963 33
Q ss_pred cccccccccchhchHHhhc--CchHHHHHHHHHHHHhc----CcchHHHHHhhcCChHHHHHHhhcC----CHHHHHHHH
Q 036199 540 IQSHIAPSEFLPKLVPFLK--DATLAVSCLVILKNMCN----TEHARVCVVETSGCLPSVAELLEIG----SEEDQEHAV 609 (710)
Q Consensus 540 n~~~iv~aG~V~~Lv~lL~--~~~~~~~al~iL~nLa~----~~e~r~~i~~~~g~I~~Lv~lL~~~----s~~~ke~A~ 609 (710)
.-..+ +.++|.|..+|. +....+.++-.+..++. .++--..+.. .|.|.....+|... +....---+
T Consensus 329 ~f~~v--~ealPlL~~lLs~~D~k~ies~~ic~~ri~d~f~h~~~kLdql~s-~dLi~~~~qLlsvt~t~Ls~~~~~~vI 405 (1051)
T KOG0168|consen 329 EFHFV--MEALPLLTPLLSYQDKKPIESVCICLTRIADGFQHGPDKLDQLCS-HDLITNIQQLLSVTPTILSNGTYTGVI 405 (1051)
T ss_pred cchHH--HHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccChHHHHHHhc-hhHHHHHHHHHhcCcccccccchhHHH
Confidence 33333 468999999994 45667777777777766 2334466777 68899999888753 333445567
Q ss_pred HHHHHHhcCChHHHHHHHhCCchHHHHHHhhc
Q 036199 610 AILLCLCSQRDQYCKLVMNEGVIPSLVKISVY 641 (710)
Q Consensus 610 ~aL~~Lc~~~~~~~~~v~~~G~v~~Lv~L~~~ 641 (710)
..|..+|++++-......+.++...|..++..
T Consensus 406 rmls~msS~~pl~~~tl~k~~I~~~L~~il~g 437 (1051)
T KOG0168|consen 406 RMLSLMSSGSPLLFRTLLKLDIADTLKRILQG 437 (1051)
T ss_pred HHHHHHccCChHHHHHHHHhhHHHHHHHHHhc
Confidence 77788888888888889999999999887654
|
|
| >PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B | Back alignment and domain information |
|---|
Probab=98.42 E-value=1.4e-07 Score=74.68 Aligned_cols=58 Identities=17% Similarity=0.405 Sum_probs=34.1
Q ss_pred cccccCCccccCCcee-cCCCCccchhhHHHHhhhCCCCCCCCCCccCCCCCcccHHHHHHH
Q 036199 268 VFKCPLSLRLMYDPVV-IESGQTFERMWIQKWFEEGNHTCPKTKMKLVCQSLTPNTAMKDLI 328 (710)
Q Consensus 268 ~f~CPI~~~~m~DPV~-~~~G~ty~r~~I~~w~~~g~~~cP~t~~~l~~~~l~pN~~l~~~i 328 (710)
-++|++|.++|++||. ..|.|.||+.||.+.+.. .||+|+.|..-.++.-|+.|-++|
T Consensus 7 lLrCs~C~~~l~~pv~l~~CeH~fCs~Ci~~~~~~---~CPvC~~Paw~qD~~~NrqLd~~i 65 (65)
T PF14835_consen 7 LLRCSICFDILKEPVCLGGCEHIFCSSCIRDCIGS---ECPVCHTPAWIQDIQINRQLDSMI 65 (65)
T ss_dssp TTS-SSS-S--SS-B---SSS--B-TTTGGGGTTT---B-SSS--B-S-SS----HHHHHHH
T ss_pred hcCCcHHHHHhcCCceeccCccHHHHHHhHHhcCC---CCCCcCChHHHHHHHhhhhhhccC
Confidence 3789999999999997 499999999999987753 399999999889999999998886
|
|
| >KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.40 E-value=5.1e-06 Score=88.91 Aligned_cols=270 Identities=11% Similarity=0.114 Sum_probs=192.9
Q ss_pred cCCCHHHHHHHHHHHHHHHccCcccchhcccCCcHHHHHHHhhccccCCC---HHHHHHHHHHHHHHhcc-CCCCCcccc
Q 036199 391 TELNWDCQCKVIEDYETRLEHDNQVSHSLSSTNFVEPLIRFLRDARDLHD---SRAQRIGCRLLLAFVSK-NRSGIPYLN 466 (710)
Q Consensus 391 ~s~~~e~q~~Al~~L~~Lak~~~~~r~~I~~~G~I~~LV~lL~s~~~~~d---~~~q~~A~~~L~nL~~~-~~~k~~i~~ 466 (710)
.+.+.++-.+....|...+-++.++|..+.+.|+-..+++.|+.-+...+ .+...-+...|.|.+.+ +.-+...++
T Consensus 97 sS~d~ev~~Q~~RaLgNiCydn~E~R~a~~~lgGaqivid~L~~~cs~d~~ane~~~~v~~g~l~Ny~l~~~~l~aq~~~ 176 (604)
T KOG4500|consen 97 SSPDTEVHEQCFRALGNICYDNNENRAAFFNLGGAQIVIDVLKPYCSKDNPANEEYSAVAFGVLHNYILDSRELRAQVAD 176 (604)
T ss_pred CCCcccHHHHHHHHHhhhhccCchhHHHHHhcCCceehHhhhccccccCCccHHHHHHHHHHHHHHhhCCcHHHHHHHHh
Confidence 34445666677778888889999999999999998888998876433223 24455566677777544 344566678
Q ss_pred ccchHHHHHHhccCcH------------------------------------------------HHHHHHHHHHhccCch
Q 036199 467 EDLFSLLASFLHSAAA------------------------------------------------TEETLAILVALSSYAY 498 (710)
Q Consensus 467 ~gaI~~LV~lL~s~~~------------------------------------------------~~~Aa~~L~~Ls~~~~ 498 (710)
.|+++.|+..+.=+.. .+-...+|...+.++.
T Consensus 177 ~gVl~tL~~~~~I~~qNaa~~e~ll~~f~nlls~~~e~~~~~~~d~sl~~~l~~ll~~~v~~d~~eM~feila~~aend~ 256 (604)
T KOG4500|consen 177 AGVLNTLAITYWIDWQNAALTEKLLAPFFNLLSFVCEMLYPFCKDCSLVFMLLQLLPSMVREDIDEMIFEILAKAAENDL 256 (604)
T ss_pred cccHHHHHHHhhcccccHHHHHHHHhccccHHHHHHHhhhhhhccchHHHHHHHHHHHhhccchhhHHHHHHHHHhcCcc
Confidence 8998877755531110 0112445555667777
Q ss_pred hhHHHhhhCcHHHHHHhhcC-CCH-------HHHHHHHHHHHHhccCccccccccccc-chhchHHhhcC--chHHHHHH
Q 036199 499 FISKIVASGALASILNMLDS-PNG-------KFQELAIKILHNLSSDVDIQSHIAPSE-FLPKLVPFLKD--ATLAVSCL 567 (710)
Q Consensus 499 nk~~I~~~GaI~~LV~LL~~-~~~-------~~~~~A~~aL~nLs~~~en~~~iv~aG-~V~~Lv~lL~~--~~~~~~al 567 (710)
.|..+++.|.+.-++++++. .+. ...+.++....-|...++.-..+..-| .++.++.-+.+ .++.....
T Consensus 257 Vkl~la~~gl~e~~~~lv~~~k~~t~k~d~~~l~k~~~el~vllltGDeSMq~L~~~p~~l~~~~sw~~S~d~~l~t~g~ 336 (604)
T KOG4500|consen 257 VKLSLAQNGLLEDSIDLVRNMKDFTKKTDMLNLFKRIAELDVLLLTGDESMQKLHADPQFLDFLESWFRSDDSNLITMGS 336 (604)
T ss_pred eeeehhhcchHHHHHHHHHhcccccchHHHHHHHHhhhhHhhhhhcCchHHHHHhcCcHHHHHHHHHhcCCchhHHHHHH
Confidence 88888889999999998865 221 223344444455555666666666555 66667777744 45677777
Q ss_pred HHHHHHhcCcchHHHHHhhcCChHHHHHHhhc-----CCHHHHHHHHHHHHHHhcCChHHHHHHHhCCchHHHHHHhhcC
Q 036199 568 VILKNMCNTEHARVCVVETSGCLPSVAELLEI-----GSEEDQEHAVAILLCLCSQRDQYCKLVMNEGVIPSLVKISVYG 642 (710)
Q Consensus 568 ~iL~nLa~~~e~r~~i~~~~g~I~~Lv~lL~~-----~s~~~ke~A~~aL~~Lc~~~~~~~~~v~~~G~v~~Lv~L~~~g 642 (710)
-+++|+++.+.....+++ .|.+..|++.|.. |+.+.+-.++++|.++.--- .++..+..+|+++.++..++..
T Consensus 337 LaigNfaR~D~~ci~~v~-~~~~nkL~~~l~~~~~vdgnV~~qhA~lsALRnl~IPv-~nka~~~~aGvteaIL~~lk~~ 414 (604)
T KOG4500|consen 337 LAIGNFARRDDICIQLVQ-KDFLNKLISCLMQEKDVDGNVERQHACLSALRNLMIPV-SNKAHFAPAGVTEAILLQLKLA 414 (604)
T ss_pred HHHHhhhccchHHHHHHH-HHHHHHHHHHHHHhcCCCccchhHHHHHHHHHhccccC-CchhhccccchHHHHHHHHHhc
Confidence 789999999999999999 7999999998763 67888889999999998766 5788999999999998888888
Q ss_pred CHHHHHHHHHHHHHhhhccC
Q 036199 643 NDKAKVSALELRRLLRDVAY 662 (710)
Q Consensus 643 t~~~k~kA~~LL~~l~~~~~ 662 (710)
.|.+.-+-..-|+.+++..+
T Consensus 415 ~ppv~fkllgTlrM~~d~qe 434 (604)
T KOG4500|consen 415 SPPVTFKLLGTLRMIRDSQE 434 (604)
T ss_pred CCcchHHHHHHHHHHHhchH
Confidence 77777776666666665544
|
|
| >cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments | Back alignment and domain information |
|---|
Probab=98.39 E-value=8.1e-06 Score=90.25 Aligned_cols=269 Identities=12% Similarity=0.049 Sum_probs=186.0
Q ss_pred cchhhcCCCHHHHHHHHHHHHHHHccCcccchhcccCCcHHHHHHHhhccccCCCHHHHHHHHHHHHHHhccCCCCCccc
Q 036199 386 DLSRLTELNWDCQCKVIEDYETRLEHDNQVSHSLSSTNFVEPLIRFLRDARDLHDSRAQRIGCRLLLAFVSKNRSGIPYL 465 (710)
Q Consensus 386 ~L~~L~s~~~e~q~~Al~~L~~Lak~~~~~r~~I~~~G~I~~LV~lL~s~~~~~d~~~q~~A~~~L~nL~~~~~~k~~i~ 465 (710)
|+..|...++-++..|...|..++..+..+..-....-+...|...|++. .+...+..|+.+|..+...+..|..+.
T Consensus 106 fl~lL~~~d~~i~~~a~~iLt~l~~~~~~~~~~~~l~~~~~~l~~~l~~~---~~~~~~~~~v~~L~~LL~~~~~R~~f~ 182 (429)
T cd00256 106 FFNLLNRQDQFIVHMSFSILAKLACFGLAKMEGSDLDYYFNWLKEQLNNI---TNNDYVQTAARCLQMLLRVDEYRFAFV 182 (429)
T ss_pred HHHHHcCCchhHHHHHHHHHHHHHhcCccccchhHHHHHHHHHHHHhhcc---CCcchHHHHHHHHHHHhCCchHHHHHH
Confidence 33445556677788888888777765443211111111333455555542 357788889999999988888888888
Q ss_pred cccchHHHHHHhccCc-H-H--HHHHHHHHHhccCchhhHHHhhhCcHHHHHHhhcCC-CHHHHHHHHHHHHHhccCc--
Q 036199 466 NEDLFSLLASFLHSAA-A-T--EETLAILVALSSYAYFISKIVASGALASILNMLDSP-NGKFQELAIKILHNLSSDV-- 538 (710)
Q Consensus 466 ~~gaI~~LV~lL~s~~-~-~--~~Aa~~L~~Ls~~~~nk~~I~~~GaI~~LV~LL~~~-~~~~~~~A~~aL~nLs~~~-- 538 (710)
+.++++.|+.+|+... . + -+++-+++-||-.++........+.|+.|+++++.. ...+.+-++.+|.||....
T Consensus 183 ~~~~v~~L~~~L~~~~~~~Ql~Y~~ll~lWlLSF~~~~~~~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~~~~ 262 (429)
T cd00256 183 LADGVPTLVKLLSNATLGFQLQYQSIFCIWLLTFNPHAAEVLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLISKRVD 262 (429)
T ss_pred HccCHHHHHHHHhhccccHHHHHHHHHHHHHHhccHHHHHhhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcccc
Confidence 8889999999998644 1 2 488999999998887777666789999999999755 4577889999999999743
Q ss_pred -----ccccccccccchhchHHhh----cCchHHHH-------HHHHHHHHhcCcc------------------------
Q 036199 539 -----DIQSHIAPSEFLPKLVPFL----KDATLAVS-------CLVILKNMCNTEH------------------------ 578 (710)
Q Consensus 539 -----en~~~iv~aG~V~~Lv~lL----~~~~~~~~-------al~iL~nLa~~~e------------------------ 578 (710)
.....|+..|..+.+-.+. +|+++.+. --.....|++-++
T Consensus 263 ~~~~~~~~~~mv~~~l~~~l~~L~~rk~~DedL~edl~~L~e~L~~~~k~ltsfD~Y~~El~sg~L~WSp~H~se~FW~E 342 (429)
T cd00256 263 REVKKTAALQMVQCKVLKTLQSLEQRKYDDEDLTDDLKFLTEELKNSVQDLSSFDEYKSELRSGRLHWSPVHKSEKFWRE 342 (429)
T ss_pred cchhhhHHHHHHHcChHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHhcCCccCCCCCCCchHHHH
Confidence 1234567667655444443 34554222 1112233333232
Q ss_pred hHHHHHhhc-CChHHHHHHhh-cCCHHHHHHHHHHHHHHhcCChHHHHHHHhCCchHHHHHHhhcCCHHHHHHHHHHHHH
Q 036199 579 ARVCVVETS-GCLPSVAELLE-IGSEEDQEHAVAILLCLCSQRDQYCKLVMNEGVIPSLVKISVYGNDKAKVSALELRRL 656 (710)
Q Consensus 579 ~r~~i~~~~-g~I~~Lv~lL~-~~s~~~ke~A~~aL~~Lc~~~~~~~~~v~~~G~v~~Lv~L~~~gt~~~k~kA~~LL~~ 656 (710)
+...+-+.. ..+..|+++|. +.++.....||.=+..++.+.|.-+..+-+.|+=..++.|+.+.++.+|..|...++.
T Consensus 343 N~~kf~~~~~~llk~L~~iL~~s~d~~~laVAc~Dige~vr~~P~gr~i~~~lg~K~~vM~Lm~h~d~~Vr~eAL~avQk 422 (429)
T cd00256 343 NADRLNEKNYELLKILIHLLETSVDPIILAVACHDIGEYVRHYPRGKDVVEQLGGKQRVMRLLNHEDPNVRYEALLAVQK 422 (429)
T ss_pred HHHHHHhcchHHHHHHHHHHhcCCCcceeehhhhhHHHHHHHCccHHHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 223333211 13578888885 4577777778877889999888888889999999999999999999999999998885
Q ss_pred h
Q 036199 657 L 657 (710)
Q Consensus 657 l 657 (710)
|
T Consensus 423 l 423 (429)
T cd00256 423 L 423 (429)
T ss_pred H
Confidence 4
|
The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example. |
| >PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule | Back alignment and domain information |
|---|
Probab=98.36 E-value=2.7e-07 Score=67.98 Aligned_cols=39 Identities=38% Similarity=0.910 Sum_probs=36.4
Q ss_pred ccCCccccCCce-ecCCCCccchhhHHHHhh-hCCCCCCCC
Q 036199 271 CPLSLRLMYDPV-VIESGQTFERMWIQKWFE-EGNHTCPKT 309 (710)
Q Consensus 271 CPI~~~~m~DPV-~~~~G~ty~r~~I~~w~~-~g~~~cP~t 309 (710)
||||++.+.+|+ +++|||+|++.||.+|+. .+...||.|
T Consensus 1 C~iC~~~~~~~~~~~~C~H~fC~~C~~~~~~~~~~~~CP~C 41 (41)
T PF00097_consen 1 CPICLEPFEDPVILLPCGHSFCRDCLRKWLENSGSVKCPLC 41 (41)
T ss_dssp ETTTSSBCSSEEEETTTSEEEEHHHHHHHHHHTSSSBTTTT
T ss_pred CCcCCccccCCCEEecCCCcchHHHHHHHHHhcCCccCCcC
Confidence 899999999999 889999999999999998 677889975
|
Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A .... |
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=98.36 E-value=3.4e-05 Score=81.62 Aligned_cols=220 Identities=13% Similarity=0.125 Sum_probs=113.7
Q ss_pred hhhcCCCHHHHHHHHHHHHHHHccCcccchhcccCCcHHHHHHHhhccccCCCHHHHHHHHHHHHHHhccCCCCCccccc
Q 036199 388 SRLTELNWDCQCKVIEDYETRLEHDNQVSHSLSSTNFVEPLIRFLRDARDLHDSRAQRIGCRLLLAFVSKNRSGIPYLNE 467 (710)
Q Consensus 388 ~~L~s~~~e~q~~Al~~L~~Lak~~~~~r~~I~~~G~I~~LV~lL~s~~~~~d~~~q~~A~~~L~nL~~~~~~k~~i~~~ 467 (710)
..|.+.+..++..|+..|..+- ....++.+..++.+ .|+.++..|+.+|..+-..... ..
T Consensus 30 ~~L~d~d~~vR~~A~~aL~~~~-----------~~~~~~~l~~ll~~----~d~~vR~~A~~aLg~lg~~~~~-----~~ 89 (280)
T PRK09687 30 RLLDDHNSLKRISSIRVLQLRG-----------GQDVFRLAIELCSS----KNPIERDIGADILSQLGMAKRC-----QD 89 (280)
T ss_pred HHHhCCCHHHHHHHHHHHHhcC-----------cchHHHHHHHHHhC----CCHHHHHHHHHHHHhcCCCccc-----hH
Confidence 5566677777877777776442 24466777777766 6788888888888876322110 23
Q ss_pred cchHHHHHH-hccCcH--HHHHHHHHHHhccCchhhHHHhhhCcHHHHHHhhcCCCHHHHHHHHHHHHHhccCccccccc
Q 036199 468 DLFSLLASF-LHSAAA--TEETLAILVALSSYAYFISKIVASGALASILNMLDSPNGKFQELAIKILHNLSSDVDIQSHI 544 (710)
Q Consensus 468 gaI~~LV~l-L~s~~~--~~~Aa~~L~~Ls~~~~nk~~I~~~GaI~~LV~LL~~~~~~~~~~A~~aL~nLs~~~en~~~i 544 (710)
.+++.|..+ +++++. +..|+.+|.++....... ...++..|...+.+.+..++..|+.+|.++.
T Consensus 90 ~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~----~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~--------- 156 (280)
T PRK09687 90 NVFNILNNLALEDKSACVRASAINATGHRCKKNPLY----SPKIVEQSQITAFDKSTNVRFAVAFALSVIN--------- 156 (280)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHhccccccccc----chHHHHHHHHHhhCCCHHHHHHHHHHHhccC---------
Confidence 467777776 444443 347777777664322100 1112334444444445555555555553322
Q ss_pred ccccchhchHHhhcC--chHHHHHHHHHHHHhcCcc-hHH----------------------HHHhhcCChHHHHHHhhc
Q 036199 545 APSEFLPKLVPFLKD--ATLAVSCLVILKNMCNTEH-ARV----------------------CVVETSGCLPSVAELLEI 599 (710)
Q Consensus 545 v~aG~V~~Lv~lL~~--~~~~~~al~iL~nLa~~~e-~r~----------------------~i~~~~g~I~~Lv~lL~~ 599 (710)
...+++.|+.+|.+ +.+...|+..|+.+....+ ... .+. +..+|+.|++.|..
T Consensus 157 -~~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L~D~~~~VR~~A~~aLg~~~-~~~av~~Li~~L~~ 234 (280)
T PRK09687 157 -DEAAIPLLINLLKDPNGDVRNWAAFALNSNKYDNPDIREAFVAMLQDKNEEIRIEAIIGLALRK-DKRVLSVLIKELKK 234 (280)
T ss_pred -CHHHHHHHHHHhcCCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHccC-ChhHHHHHHHHHcC
Confidence 12344555555533 2344444444444411000 000 000 02244555555544
Q ss_pred CCHHHHHHHHHHHHHHhcCChHHHHHHHhCCchHHHHHHhh-cCCHHHHHHHHHHHH
Q 036199 600 GSEEDQEHAVAILLCLCSQRDQYCKLVMNEGVIPSLVKISV-YGNDKAKVSALELRR 655 (710)
Q Consensus 600 ~s~~~ke~A~~aL~~Lc~~~~~~~~~v~~~G~v~~Lv~L~~-~gt~~~k~kA~~LL~ 655 (710)
++ .+..|+.+|-.+... -++|.|..++. +.+.+++.+|.+.|+
T Consensus 235 ~~--~~~~a~~ALg~ig~~-----------~a~p~L~~l~~~~~d~~v~~~a~~a~~ 278 (280)
T PRK09687 235 GT--VGDLIIEAAGELGDK-----------TLLPVLDTLLYKFDDNEIITKAIDKLK 278 (280)
T ss_pred Cc--hHHHHHHHHHhcCCH-----------hHHHHHHHHHhhCCChhHHHHHHHHHh
Confidence 33 223344444333221 24678877775 777888888877664
|
|
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=98.31 E-value=2.2e-05 Score=83.09 Aligned_cols=189 Identities=15% Similarity=0.144 Sum_probs=135.7
Q ss_pred cHHHHHHHhhccccCCCHHHHHHHHHHHHHHhccCCCCCccccccchHHHHHHhccCcHH--HHHHHHHHHhccCchhhH
Q 036199 424 FVEPLIRFLRDARDLHDSRAQRIGCRLLLAFVSKNRSGIPYLNEDLFSLLASFLHSAAAT--EETLAILVALSSYAYFIS 501 (710)
Q Consensus 424 ~I~~LV~lL~s~~~~~d~~~q~~A~~~L~nL~~~~~~k~~i~~~gaI~~LV~lL~s~~~~--~~Aa~~L~~Ls~~~~nk~ 501 (710)
.++.|+.+|.+ .|..++..|+.+|..+- ...+++.+..++.+++.. ..|+++|..|...+..
T Consensus 24 ~~~~L~~~L~d----~d~~vR~~A~~aL~~~~----------~~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~-- 87 (280)
T PRK09687 24 NDDELFRLLDD----HNSLKRISSIRVLQLRG----------GQDVFRLAIELCSSKNPIERDIGADILSQLGMAKRC-- 87 (280)
T ss_pred cHHHHHHHHhC----CCHHHHHHHHHHHHhcC----------cchHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccc--
Confidence 47788899977 78999999999988662 356788999999888763 5889999887643321
Q ss_pred HHhhhCcHHHHHHh-hcCCCHHHHHHHHHHHHHhccCcccccccccccchhchHHhhcC--chHHHHHHHHHHHHhcCcc
Q 036199 502 KIVASGALASILNM-LDSPNGKFQELAIKILHNLSSDVDIQSHIAPSEFLPKLVPFLKD--ATLAVSCLVILKNMCNTEH 578 (710)
Q Consensus 502 ~I~~~GaI~~LV~L-L~~~~~~~~~~A~~aL~nLs~~~en~~~iv~aG~V~~Lv~lL~~--~~~~~~al~iL~nLa~~~e 578 (710)
...+++.|..+ +.+.++.++..|+.+|.+++....+. ...++..|...+.+ +.++..++.+|..+.
T Consensus 88 ---~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~----~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~---- 156 (280)
T PRK09687 88 ---QDNVFNILNNLALEDKSACVRASAINATGHRCKKNPLY----SPKIVEQSQITAFDKSTNVRFAVAFALSVIN---- 156 (280)
T ss_pred ---hHHHHHHHHHHHhcCCCHHHHHHHHHHHhccccccccc----chHHHHHHHHHhhCCCHHHHHHHHHHHhccC----
Confidence 22467888887 67888999999999999986433211 22345566666654 456777777775442
Q ss_pred hHHHHHhhcCChHHHHHHhhcCCHHHHHHHHHHHHHHhcCChHHHHHHHhCCchHHHHHHhhcCCHHHHHHHHHHHH
Q 036199 579 ARVCVVETSGCLPSVAELLEIGSEEDQEHAVAILLCLCSQRDQYCKLVMNEGVIPSLVKISVYGNDKAKVSALELRR 655 (710)
Q Consensus 579 ~r~~i~~~~g~I~~Lv~lL~~~s~~~ke~A~~aL~~Lc~~~~~~~~~v~~~G~v~~Lv~L~~~gt~~~k~kA~~LL~ 655 (710)
. ..+++.|+.+|...++.++..|+.+|-.+...++ .+++.|+.++.+.+..+|..|...|.
T Consensus 157 ------~-~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~~~---------~~~~~L~~~L~D~~~~VR~~A~~aLg 217 (280)
T PRK09687 157 ------D-EAAIPLLINLLKDPNGDVRNWAAFALNSNKYDNP---------DIREAFVAMLQDKNEEIRIEAIIGLA 217 (280)
T ss_pred ------C-HHHHHHHHHHhcCCCHHHHHHHHHHHhcCCCCCH---------HHHHHHHHHhcCCChHHHHHHHHHHH
Confidence 1 3468888889988888899999988888744332 34566777777777777777777665
|
|
| >KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.21 E-value=6.3e-07 Score=88.96 Aligned_cols=58 Identities=26% Similarity=0.543 Sum_probs=51.6
Q ss_pred CCcccccCCccccCCceecCCCCccchhhHHHHhh--hCCCCCCCCCCccCCCCCcccHH
Q 036199 266 PEVFKCPLSLRLMYDPVVIESGQTFERMWIQKWFE--EGNHTCPKTKMKLVCQSLTPNTA 323 (710)
Q Consensus 266 p~~f~CPI~~~~m~DPV~~~~G~ty~r~~I~~w~~--~g~~~cP~t~~~l~~~~l~pN~~ 323 (710)
-..|-|-||++.=+|||++.|||=||=-||.+|+. .+...||+|+-..+...++|=|.
T Consensus 45 ~~~FdCNICLd~akdPVvTlCGHLFCWpClyqWl~~~~~~~~cPVCK~~Vs~~~vvPlYG 104 (230)
T KOG0823|consen 45 GGFFDCNICLDLAKDPVVTLCGHLFCWPCLYQWLQTRPNSKECPVCKAEVSIDTVVPLYG 104 (230)
T ss_pred CCceeeeeeccccCCCEEeecccceehHHHHHHHhhcCCCeeCCccccccccceEEeeec
Confidence 35699999999999999999999999999999987 34566899999999999999654
|
|
| >PHA02929 N1R/p28-like protein; Provisional | Back alignment and domain information |
|---|
Probab=98.19 E-value=1.1e-06 Score=89.41 Aligned_cols=48 Identities=19% Similarity=0.503 Sum_probs=40.9
Q ss_pred CCcccccCCccccCCc--------eecCCCCccchhhHHHHhhhCCCCCCCCCCccC
Q 036199 266 PEVFKCPLSLRLMYDP--------VVIESGQTFERMWIQKWFEEGNHTCPKTKMKLV 314 (710)
Q Consensus 266 p~~f~CPI~~~~m~DP--------V~~~~G~ty~r~~I~~w~~~g~~~cP~t~~~l~ 314 (710)
..+..||||++.+.+| |+.+|||+||+.||.+|+. .+.+||.|+.++.
T Consensus 172 ~~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~-~~~tCPlCR~~~~ 227 (238)
T PHA02929 172 SKDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKK-EKNTCPVCRTPFI 227 (238)
T ss_pred CCCCCCccCCcccccCccccccceecCCCCCcccHHHHHHHHh-cCCCCCCCCCEee
Confidence 4467899999988774 5678999999999999987 4779999998765
|
|
| >PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A | Back alignment and domain information |
|---|
Probab=98.19 E-value=1.1e-06 Score=67.70 Aligned_cols=47 Identities=19% Similarity=0.417 Sum_probs=41.0
Q ss_pred CcccccCCccccCCceecCCCCc-cchhhHHHHhhhCCCCCCCCCCccC
Q 036199 267 EVFKCPLSLRLMYDPVVIESGQT-FERMWIQKWFEEGNHTCPKTKMKLV 314 (710)
Q Consensus 267 ~~f~CPI~~~~m~DPV~~~~G~t-y~r~~I~~w~~~g~~~cP~t~~~l~ 314 (710)
+++.|+||++-+.|+++++|||. ||..|+.+|+. ....||.|++++.
T Consensus 1 ~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~-~~~~CP~Cr~~i~ 48 (50)
T PF13920_consen 1 EDEECPICFENPRDVVLLPCGHLCFCEECAERLLK-RKKKCPICRQPIE 48 (50)
T ss_dssp -HSB-TTTSSSBSSEEEETTCEEEEEHHHHHHHHH-TTSBBTTTTBB-S
T ss_pred CcCCCccCCccCCceEEeCCCChHHHHHHhHHhcc-cCCCCCcCChhhc
Confidence 46889999999999999999999 99999999998 6778999998765
|
... |
| >KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=98.17 E-value=7e-07 Score=92.06 Aligned_cols=70 Identities=14% Similarity=0.416 Sum_probs=62.7
Q ss_pred CCCCcccccCCccccCCceecCCCCccchhhHHHHhhhCCCCCCCCCCccCCCCCcccHHHHHHHHHHHHH
Q 036199 264 IIPEVFKCPLSLRLMYDPVVIESGQTFERMWIQKWFEEGNHTCPKTKMKLVCQSLTPNTAMKDLISKWCMN 334 (710)
Q Consensus 264 ~~p~~f~CPI~~~~m~DPV~~~~G~ty~r~~I~~w~~~g~~~cP~t~~~l~~~~l~pN~~l~~~i~~w~~~ 334 (710)
.+-.-++|-||.+.|+-||+++||||||--||.+++. .++.||.|..++....|+-|+-|-.+|+.+-..
T Consensus 19 ~lD~lLRC~IC~eyf~ip~itpCsHtfCSlCIR~~L~-~~p~CP~C~~~~~Es~Lr~n~il~Eiv~S~~~~ 88 (442)
T KOG0287|consen 19 TLDDLLRCGICFEYFNIPMITPCSHTFCSLCIRKFLS-YKPQCPTCCVTVTESDLRNNRILDEIVKSLNFA 88 (442)
T ss_pred hhHHHHHHhHHHHHhcCceeccccchHHHHHHHHHhc-cCCCCCceecccchhhhhhhhHHHHHHHHHHHH
Confidence 3445589999999999999999999999999999997 478899999999999999999999999988543
|
|
| >KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.15 E-value=1.3e-06 Score=92.60 Aligned_cols=70 Identities=24% Similarity=0.569 Sum_probs=60.7
Q ss_pred CCCCcccccCCccccCCceecCCCCccchhhHHHHhhhCCCCCCCCCCccCCCCCcccHHHHHHHHHHHHHcC
Q 036199 264 IIPEVFKCPLSLRLMYDPVVIESGQTFERMWIQKWFEEGNHTCPKTKMKLVCQSLTPNTAMKDLISKWCMNLC 336 (710)
Q Consensus 264 ~~p~~f~CPI~~~~m~DPV~~~~G~ty~r~~I~~w~~~g~~~cP~t~~~l~~~~l~pN~~l~~~i~~w~~~~~ 336 (710)
...+++.||||++.|++|++++||||||+.||..|+. +...||.|+. ....+.+|..+..+++.....+.
T Consensus 9 ~~~~~~~C~iC~~~~~~p~~l~C~H~~c~~C~~~~~~-~~~~Cp~cr~--~~~~~~~n~~l~~~~~~~~~~~~ 78 (386)
T KOG2177|consen 9 VLQEELTCPICLEYFREPVLLPCGHNFCRACLTRSWE-GPLSCPVCRP--PSRNLRPNVLLANLVERLRQLRL 78 (386)
T ss_pred hccccccChhhHHHhhcCccccccchHhHHHHHHhcC-CCcCCcccCC--chhccCccHHHHHHHHHHHhcCC
Confidence 3457899999999999999999999999999999998 7778999985 22377899999999999877654
|
|
| >KOG2042 consensus Ubiquitin fusion degradation protein-2 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.13 E-value=2.3e-06 Score=100.56 Aligned_cols=73 Identities=30% Similarity=0.414 Sum_probs=67.2
Q ss_pred cCCCCCcccccCCccccCCceecC-CCCccchhhHHHHhhhCCCCCCCCCCccCCCCCcccHHHHHHHHHHHHHc
Q 036199 262 RAIIPEVFKCPLSLRLMYDPVVIE-SGQTFERMWIQKWFEEGNHTCPKTKMKLVCQSLTPNTAMKDLISKWCMNL 335 (710)
Q Consensus 262 ~~~~p~~f~CPI~~~~m~DPV~~~-~G~ty~r~~I~~w~~~g~~~cP~t~~~l~~~~l~pN~~l~~~i~~w~~~~ 335 (710)
-.++|++|.-||+..+|+|||+++ +|+|-||+.|++++-. ..|.|.|+++|+...++||..||.-|+.|....
T Consensus 864 l~dvpdef~DPlm~Tlm~dPV~LP~Srv~vDRsti~rhlLs-~~tdPFNR~pLt~d~v~pn~eLK~kI~~~~~ek 937 (943)
T KOG2042|consen 864 LGDVPDEFLDPLMSTLMSDPVVLPSSRVTVDRSTIERHLLS-DCTDPFNREPLTEDMVSPNEELKAKIRCWIKEK 937 (943)
T ss_pred hccCchhhhCccccccCCCCccCCcccccccHHHHHHHHhc-CCCCccccccCchhhcCCCHHHHHHHHHHHHHh
Confidence 457999999999999999999998 9999999999999875 457999999999999999999999999996654
|
|
| >COG5113 UFD2 Ubiquitin fusion degradation protein 2 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.10 E-value=4.4e-06 Score=92.52 Aligned_cols=75 Identities=27% Similarity=0.412 Sum_probs=67.2
Q ss_pred ccccCCCCCcccccCCccccCCceec-CCCCccchhhHHHHhhhCCCCCCCCCCccCCCCCcccHHHHHHHHHHHHH
Q 036199 259 NLSRAIIPEVFKCPLSLRLMYDPVVI-ESGQTFERMWIQKWFEEGNHTCPKTKMKLVCQSLTPNTAMKDLISKWCMN 334 (710)
Q Consensus 259 ~~~~~~~p~~f~CPI~~~~m~DPV~~-~~G~ty~r~~I~~w~~~g~~~cP~t~~~l~~~~l~pN~~l~~~i~~w~~~ 334 (710)
+++.+++|++|+.|++..+|+|||++ .+|.|.||+.|..++-++ .|.|..+.||+-.+++||-.||..|-.|...
T Consensus 845 eED~GDvPDeFlDPLmftimkdPV~Lp~S~i~IDRSTikahllsd-~tDPFNRmPLtlddVtpn~eLrekIn~f~k~ 920 (929)
T COG5113 845 EEDMGDVPDEFLDPLMFTIMKDPVKLPTSRITIDRSTIKAHLLSD-GTDPFNRMPLTLDDVTPNAELREKINRFYKC 920 (929)
T ss_pred hhhccCCchhhhCchhhhcccCCeecccccccccHHHHHHHHhcC-CCCccccCCCchhhcCCCHHHHHHHHHHHhc
Confidence 34578899999999999999999998 668999999999998754 4899999999999999999999999988554
|
|
| >cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H) | Back alignment and domain information |
|---|
Probab=98.08 E-value=3e-06 Score=62.86 Aligned_cols=43 Identities=37% Similarity=0.858 Sum_probs=39.0
Q ss_pred cccCCccccCCceecC-CCCccchhhHHHHhhhCCCCCCCCCCc
Q 036199 270 KCPLSLRLMYDPVVIE-SGQTFERMWIQKWFEEGNHTCPKTKMK 312 (710)
Q Consensus 270 ~CPI~~~~m~DPV~~~-~G~ty~r~~I~~w~~~g~~~cP~t~~~ 312 (710)
.||||++.+.+|+.+. |||+|+..|+.+|+..+...||.|+..
T Consensus 1 ~C~iC~~~~~~~~~~~~C~H~~c~~C~~~~~~~~~~~Cp~C~~~ 44 (45)
T cd00162 1 ECPICLEEFREPVVLLPCGHVFCRSCIDKWLKSGKNTCPLCRTP 44 (45)
T ss_pred CCCcCchhhhCceEecCCCChhcHHHHHHHHHhCcCCCCCCCCc
Confidence 4999999999999886 999999999999999878889999865
|
|
| >KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.06 E-value=8.5e-05 Score=85.42 Aligned_cols=203 Identities=17% Similarity=0.169 Sum_probs=154.1
Q ss_pred cHHHHHHHhhccccCCCHHHHHHHHHHHHHHh--ccCCCCCccccccchHHHHHHhccCcH---HHHHHHHHHHhc-cCc
Q 036199 424 FVEPLIRFLRDARDLHDSRAQRIGCRLLLAFV--SKNRSGIPYLNEDLFSLLASFLHSAAA---TEETLAILVALS-SYA 497 (710)
Q Consensus 424 ~I~~LV~lL~s~~~~~d~~~q~~A~~~L~nL~--~~~~~k~~i~~~gaI~~LV~lL~s~~~---~~~Aa~~L~~Ls-~~~ 497 (710)
-+..|+.=|.. ..|+..|..|+.-|..+. .++..-..+.-.-.+|.||.+|+++.. .-.|+.+|.+|+ ..+
T Consensus 168 k~kkLL~gL~~---~~Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP 244 (1051)
T KOG0168|consen 168 KAKKLLQGLQA---ESDESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLP 244 (1051)
T ss_pred HHHHHHHhccc---cCChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhcc
Confidence 34455555544 358889999999888763 344443344456789999999998764 358999999998 577
Q ss_pred hhhHHHhhhCcHHHHHHhh-cCCCHHHHHHHHHHHHHhccCcccccccccccchhchHHhhc--CchHHHHHHHHHHHHh
Q 036199 498 YFISKIVASGALASILNML-DSPNGKFQELAIKILHNLSSDVDIQSHIAPSEFLPKLVPFLK--DATLAVSCLVILKNMC 574 (710)
Q Consensus 498 ~nk~~I~~~GaI~~LV~LL-~~~~~~~~~~A~~aL~nLs~~~en~~~iv~aG~V~~Lv~lL~--~~~~~~~al~iL~nLa 574 (710)
.....+++.++||.|+.-| .-.-.++.+.++.||-.||..+. ..+.++|++-..+..|. +-.++..|+++.+|+|
T Consensus 245 ~S~a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H~--~AiL~AG~l~a~LsylDFFSi~aQR~AlaiaaN~C 322 (1051)
T KOG0168|consen 245 RSSAIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRHP--KAILQAGALSAVLSYLDFFSIHAQRVALAIAANCC 322 (1051)
T ss_pred chhheeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhcc--HHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888999999999765 45567899999999999996432 46789999999988883 4567999999999999
Q ss_pred c--CcchHHHHHhhcCChHHHHHHhhcCCHHHHHHHHHHHHHHhcC---ChHHHHHHHhCCchHH
Q 036199 575 N--TEHARVCVVETSGCLPSVAELLEIGSEEDQEHAVAILLCLCSQ---RDQYCKLVMNEGVIPS 634 (710)
Q Consensus 575 ~--~~e~r~~i~~~~g~I~~Lv~lL~~~s~~~ke~A~~aL~~Lc~~---~~~~~~~v~~~G~v~~ 634 (710)
. .++.-..+++ .+|.|-.+|...+.+.-|.++-+|..+..+ .++.-+.+...|.+.-
T Consensus 323 ksi~sd~f~~v~e---alPlL~~lLs~~D~k~ies~~ic~~ri~d~f~h~~~kLdql~s~dLi~~ 384 (1051)
T KOG0168|consen 323 KSIRSDEFHFVME---ALPLLTPLLSYQDKKPIESVCICLTRIADGFQHGPDKLDQLCSHDLITN 384 (1051)
T ss_pred hcCCCccchHHHH---HHHHHHHHHhhccchhHHHHHHHHHHHHHhcccChHHHHHHhchhHHHH
Confidence 8 5666677777 599999999999999999998888776532 3344444555555443
|
|
| >KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.00 E-value=3.8e-06 Score=79.92 Aligned_cols=51 Identities=25% Similarity=0.596 Sum_probs=43.9
Q ss_pred ccccCCccccCC--ceecCCCCccchhhHHHHhhhCCCCCCCCCCccCCCCCcc
Q 036199 269 FKCPLSLRLMYD--PVVIESGQTFERMWIQKWFEEGNHTCPKTKMKLVCQSLTP 320 (710)
Q Consensus 269 f~CPI~~~~m~D--PV~~~~G~ty~r~~I~~w~~~g~~~cP~t~~~l~~~~l~p 320 (710)
|.||||++-... ||.+.|||-||+.||+..++.++ .||.|++.+++..+.+
T Consensus 132 ~~CPiCl~~~sek~~vsTkCGHvFC~~Cik~alk~~~-~CP~C~kkIt~k~~~r 184 (187)
T KOG0320|consen 132 YKCPICLDSVSEKVPVSTKCGHVFCSQCIKDALKNTN-KCPTCRKKITHKQFHR 184 (187)
T ss_pred cCCCceecchhhccccccccchhHHHHHHHHHHHhCC-CCCCcccccchhhhee
Confidence 999999998876 45579999999999999998655 7999999988876654
|
|
| >KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.00 E-value=0.00016 Score=76.86 Aligned_cols=177 Identities=17% Similarity=0.222 Sum_probs=148.9
Q ss_pred HHHHHHHHHhccCchhhHHHhhhCcHHHHHHhhcCCCHHHHHHHHHHHHHhcc-CcccccccccccchhchHHhhcC-c-
Q 036199 484 EETLAILVALSSYAYFISKIVASGALASILNMLDSPNGKFQELAIKILHNLSS-DVDIQSHIAPSEFLPKLVPFLKD-A- 560 (710)
Q Consensus 484 ~~Aa~~L~~Ls~~~~nk~~I~~~GaI~~LV~LL~~~~~~~~~~A~~aL~nLs~-~~en~~~iv~aG~V~~Lv~lL~~-~- 560 (710)
+.|..-|..+..+-+|.-.+...|+..+|+..+.+.+..+++.|+++|...+. ++.....+.+.|+.+.|+..++. .
T Consensus 101 e~ald~Le~lve~iDnAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~~ls~~~~ 180 (342)
T KOG2160|consen 101 EDALDNLEELVEDIDNANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLLKILSSDDP 180 (342)
T ss_pred HHHHHHHHHHHHhhhhHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHHHHHccCCC
Confidence 57777778888888899999999999999999999999999999999999987 57788889999999999999953 2
Q ss_pred -hHHHHHHHHHHHHhc-CcchHHHHHhhcCChHHHHHHhhc--CCHHHHHHHHHHHHHHhcCChHHHHHHHhCCchHHHH
Q 036199 561 -TLAVSCLVILKNMCN-TEHARVCVVETSGCLPSVAELLEI--GSEEDQEHAVAILLCLCSQRDQYCKLVMNEGVIPSLV 636 (710)
Q Consensus 561 -~~~~~al~iL~nLa~-~~e~r~~i~~~~g~I~~Lv~lL~~--~s~~~ke~A~~aL~~Lc~~~~~~~~~v~~~G~v~~Lv 636 (710)
....+|+.++..|-+ ++.|...+.. .+|...|..+|.. .+.+.|..|+..+..|..........+...|....++
T Consensus 181 ~~~r~kaL~AissLIRn~~~g~~~fl~-~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~d~~~~~~f~~~~~ 259 (342)
T KOG2160|consen 181 NTVRTKALFAISSLIRNNKPGQDEFLK-LNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDEDIASSLGFQRVLE 259 (342)
T ss_pred chHHHHHHHHHHHHHhcCcHHHHHHHh-cCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhhhHHHHhhhhHHHH
Confidence 346889999999888 5777888887 6779999999998 6788899999999999888866777888888888889
Q ss_pred HHhhcCCHHHHHHHHH-HHHHhhhcc
Q 036199 637 KISVYGNDKAKVSALE-LRRLLRDVA 661 (710)
Q Consensus 637 ~L~~~gt~~~k~kA~~-LL~~l~~~~ 661 (710)
.+..+....+++.|.. +|..+....
T Consensus 260 ~l~~~l~~~~~e~~l~~~l~~l~~~~ 285 (342)
T KOG2160|consen 260 NLISSLDFEVNEAALTALLSLLSELS 285 (342)
T ss_pred HHhhccchhhhHHHHHHHHHHHHHHh
Confidence 9998888888888876 444444443
|
|
| >PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A | Back alignment and domain information |
|---|
Probab=97.97 E-value=3.1e-06 Score=63.39 Aligned_cols=40 Identities=30% Similarity=0.788 Sum_probs=33.7
Q ss_pred cccCCccccC---CceecCCCCccchhhHHHHhhhCCCCCCCCC
Q 036199 270 KCPLSLRLMY---DPVVIESGQTFERMWIQKWFEEGNHTCPKTK 310 (710)
Q Consensus 270 ~CPI~~~~m~---DPV~~~~G~ty~r~~I~~w~~~g~~~cP~t~ 310 (710)
.||||++-|. .++.++|||.|.++||.+|+.. +.+||.|+
T Consensus 2 ~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~~~~~-~~~CP~CR 44 (44)
T PF13639_consen 2 ECPICLEEFEDGEKVVKLPCGHVFHRSCIKEWLKR-NNSCPVCR 44 (44)
T ss_dssp CETTTTCBHHTTSCEEEETTSEEEEHHHHHHHHHH-SSB-TTTH
T ss_pred CCcCCChhhcCCCeEEEccCCCeeCHHHHHHHHHh-CCcCCccC
Confidence 4999999994 5667899999999999999987 56999984
|
... |
| >KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.96 E-value=0.00016 Score=76.85 Aligned_cols=182 Identities=16% Similarity=0.140 Sum_probs=145.8
Q ss_pred CCCHHHHHHHHHHHHHHhccCCCCCccccccchHHHHHHhccCcH--HHHHHHHHHHhc-cCchhhHHHhhhCcHHHHHH
Q 036199 438 LHDSRAQRIGCRLLLAFVSKNRSGIPYLNEDLFSLLASFLHSAAA--TEETLAILVALS-SYAYFISKIVASGALASILN 514 (710)
Q Consensus 438 ~~d~~~q~~A~~~L~nL~~~~~~k~~i~~~gaI~~LV~lL~s~~~--~~~Aa~~L~~Ls-~~~~nk~~I~~~GaI~~LV~ 514 (710)
+.+.+.++.|..-|..++++-.|-.-+...|+...++..|++++. ++.|+++|..++ .++.....+.+.|+++.|+.
T Consensus 94 s~~le~ke~ald~Le~lve~iDnAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~ 173 (342)
T KOG2160|consen 94 SVDLEDKEDALDNLEELVEDIDNANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLLK 173 (342)
T ss_pred cCCHHHHHHHHHHHHHHHHhhhhHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHHH
Confidence 357888888888888888776666667789999999999998876 479999999777 57788889999999999999
Q ss_pred hhcCC-CHHHHHHHHHHHHHhccC-cccccccccccchhchHHhhcCc----hHHHHHHHHHHHHhcCcchHHHHHhhcC
Q 036199 515 MLDSP-NGKFQELAIKILHNLSSD-VDIQSHIAPSEFLPKLVPFLKDA----TLAVSCLVILKNMCNTEHARVCVVETSG 588 (710)
Q Consensus 515 LL~~~-~~~~~~~A~~aL~nLs~~-~en~~~iv~aG~V~~Lv~lL~~~----~~~~~al~iL~nLa~~~e~r~~i~~~~g 588 (710)
+|.+. +..++..|+.|+..|-.+ +.....+...++...|.+.|.++ .++.+++..+..|......-..+....|
T Consensus 174 ~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~d~~~~~~ 253 (342)
T KOG2160|consen 174 ILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDEDIASSLG 253 (342)
T ss_pred HHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhhhHHHHhh
Confidence 99655 456779999999999874 56677888899999999999653 4588999999999874333333555456
Q ss_pred ChHHHHHHhhcCCHHHHHHHHHHHHHHhcCC
Q 036199 589 CLPSVAELLEIGSEEDQEHAVAILLCLCSQR 619 (710)
Q Consensus 589 ~I~~Lv~lL~~~s~~~ke~A~~aL~~Lc~~~ 619 (710)
....++.+....+....++|+.+++.+-..-
T Consensus 254 f~~~~~~l~~~l~~~~~e~~l~~~l~~l~~~ 284 (342)
T KOG2160|consen 254 FQRVLENLISSLDFEVNEAALTALLSLLSEL 284 (342)
T ss_pred hhHHHHHHhhccchhhhHHHHHHHHHHHHHH
Confidence 6677777777889999999999987765544
|
|
| >smart00184 RING Ring finger | Back alignment and domain information |
|---|
Probab=97.95 E-value=7e-06 Score=58.67 Aligned_cols=39 Identities=49% Similarity=1.019 Sum_probs=36.3
Q ss_pred ccCCccccCCceecCCCCccchhhHHHHhhhCCCCCCCC
Q 036199 271 CPLSLRLMYDPVVIESGQTFERMWIQKWFEEGNHTCPKT 309 (710)
Q Consensus 271 CPI~~~~m~DPV~~~~G~ty~r~~I~~w~~~g~~~cP~t 309 (710)
||||++...+|++++|||.|+..|+..|+..+...||.+
T Consensus 1 C~iC~~~~~~~~~~~C~H~~c~~C~~~~~~~~~~~CP~C 39 (39)
T smart00184 1 CPICLEELKDPVVLPCGHTFCRSCIRKWLKSGNNTCPIC 39 (39)
T ss_pred CCcCccCCCCcEEecCCChHHHHHHHHHHHhCcCCCCCC
Confidence 899999999999999999999999999998777789975
|
E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s) |
| >COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.92 E-value=6.1e-06 Score=83.59 Aligned_cols=68 Identities=15% Similarity=0.284 Sum_probs=60.4
Q ss_pred CCcccccCCccccCCceecCCCCccchhhHHHHhhhCCCCCCCCCCccCCCCCcccHHHHHHHHHHHHH
Q 036199 266 PEVFKCPLSLRLMYDPVVIESGQTFERMWIQKWFEEGNHTCPKTKMKLVCQSLTPNTAMKDLISKWCMN 334 (710)
Q Consensus 266 p~~f~CPI~~~~m~DPV~~~~G~ty~r~~I~~w~~~g~~~cP~t~~~l~~~~l~pN~~l~~~i~~w~~~ 334 (710)
-.-++|-||.+.++-|++++||||||.-||.+++. .++.||.|+.+.....+.-|..++..++.+...
T Consensus 23 Ds~lrC~IC~~~i~ip~~TtCgHtFCslCIR~hL~-~qp~CP~Cr~~~~esrlr~~s~~~ei~es~~~~ 90 (391)
T COG5432 23 DSMLRCRICDCRISIPCETTCGHTFCSLCIRRHLG-TQPFCPVCREDPCESRLRGSSGSREINESHARN 90 (391)
T ss_pred hhHHHhhhhhheeecceecccccchhHHHHHHHhc-CCCCCccccccHHhhhcccchhHHHHHHhhhhc
Confidence 34589999999999999999999999999999997 478999999988888888898899888887543
|
|
| >PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.0012 Score=80.99 Aligned_cols=217 Identities=14% Similarity=0.100 Sum_probs=126.6
Q ss_pred hhhcCCCHHHHHHHHHHHHHHHccCcccchhcccCCcHHHHHHHhhccccCCCHHHHHHHHHHHHHHhccCCCCCccccc
Q 036199 388 SRLTELNWDCQCKVIEDYETRLEHDNQVSHSLSSTNFVEPLIRFLRDARDLHDSRAQRIGCRLLLAFVSKNRSGIPYLNE 467 (710)
Q Consensus 388 ~~L~s~~~e~q~~Al~~L~~Lak~~~~~r~~I~~~G~I~~LV~lL~s~~~~~d~~~q~~A~~~L~nL~~~~~~k~~i~~~ 467 (710)
..|.+.++.++..|+..|.... ..+.++.|+..|.+ .+..++..|+.+|..+....
T Consensus 628 ~~L~D~d~~VR~~Av~~L~~~~-----------~~~~~~~L~~aL~D----~d~~VR~~Aa~aL~~l~~~~--------- 683 (897)
T PRK13800 628 PYLADPDPGVRRTAVAVLTETT-----------PPGFGPALVAALGD----GAAAVRRAAAEGLRELVEVL--------- 683 (897)
T ss_pred HHhcCCCHHHHHHHHHHHhhhc-----------chhHHHHHHHHHcC----CCHHHHHHHHHHHHHHHhcc---------
Confidence 6677888899999988877542 35578889998866 78889998988888773211
Q ss_pred cchHHHHHHhccCcHH--HHHHHHHHHhcc-----------Cch--hhHH----HhhhCcHHHHHHhhcCCCHHHHHHHH
Q 036199 468 DLFSLLASFLHSAAAT--EETLAILVALSS-----------YAY--FISK----IVASGALASILNMLDSPNGKFQELAI 528 (710)
Q Consensus 468 gaI~~LV~lL~s~~~~--~~Aa~~L~~Ls~-----------~~~--nk~~----I~~~GaI~~LV~LL~~~~~~~~~~A~ 528 (710)
...+.|...|++++.. ..|+.+|..+.. +++ .|.. ++..+..+.|..++.++++.++..|+
T Consensus 684 ~~~~~L~~~L~~~d~~VR~~A~~aL~~~~~~~~~~l~~~L~D~d~~VR~~Av~aL~~~~~~~~l~~~l~D~~~~VR~~aa 763 (897)
T PRK13800 684 PPAPALRDHLGSPDPVVRAAALDVLRALRAGDAALFAAALGDPDHRVRIEAVRALVSVDDVESVAGAATDENREVRIAVA 763 (897)
T ss_pred CchHHHHHHhcCCCHHHHHHHHHHHHhhccCCHHHHHHHhcCCCHHHHHHHHHHHhcccCcHHHHHHhcCCCHHHHHHHH
Confidence 1124666677665542 344444443321 000 0110 11112233444444444555555555
Q ss_pred HHHHHhccCcccccccccccchhchHHhhcCc--hHHHHHHHHHHHHhcCcchHHHHHhhcCChHHHHHHhhcCCHHHHH
Q 036199 529 KILHNLSSDVDIQSHIAPSEFLPKLVPFLKDA--TLAVSCLVILKNMCNTEHARVCVVETSGCLPSVAELLEIGSEEDQE 606 (710)
Q Consensus 529 ~aL~nLs~~~en~~~iv~aG~V~~Lv~lL~~~--~~~~~al~iL~nLa~~~e~r~~i~~~~g~I~~Lv~lL~~~s~~~ke 606 (710)
.+|..+... ..+.++.|+.++.|+ .++..|+..|..+... ...++.|+..|...++.++.
T Consensus 764 ~aL~~~~~~--------~~~~~~~L~~ll~D~d~~VR~aA~~aLg~~g~~----------~~~~~~l~~aL~d~d~~VR~ 825 (897)
T PRK13800 764 KGLATLGAG--------GAPAGDAVRALTGDPDPLVRAAALAALAELGCP----------PDDVAAATAALRASAWQVRQ 825 (897)
T ss_pred HHHHHhccc--------cchhHHHHHHHhcCCCHHHHHHHHHHHHhcCCc----------chhHHHHHHHhcCCChHHHH
Confidence 555444321 112355566666443 3455555555444221 11234566666666777777
Q ss_pred HHHHHHHHHhcCChHHHHHHHhCCchHHHHHHhhcCCHHHHHHHHHHHHHh
Q 036199 607 HAVAILLCLCSQRDQYCKLVMNEGVIPSLVKISVYGNDKAKVSALELRRLL 657 (710)
Q Consensus 607 ~A~~aL~~Lc~~~~~~~~~v~~~G~v~~Lv~L~~~gt~~~k~kA~~LL~~l 657 (710)
.|+.+|..+... -+++.|+.++.+.+..+|..|...|..+
T Consensus 826 ~Aa~aL~~l~~~-----------~a~~~L~~~L~D~~~~VR~~A~~aL~~~ 865 (897)
T PRK13800 826 GAARALAGAAAD-----------VAVPALVEALTDPHLDVRKAAVLALTRW 865 (897)
T ss_pred HHHHHHHhcccc-----------chHHHHHHHhcCCCHHHHHHHHHHHhcc
Confidence 777777655322 2358999999999999999999988775
|
|
| >PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless | Back alignment and domain information |
|---|
Probab=97.80 E-value=3.2e-05 Score=56.86 Aligned_cols=40 Identities=30% Similarity=0.385 Sum_probs=37.9
Q ss_pred CchhhHHHhhhCcHHHHHHhhcCCCHHHHHHHHHHHHHhc
Q 036199 496 YAYFISKIVASGALASILNMLDSPNGKFQELAIKILHNLS 535 (710)
Q Consensus 496 ~~~nk~~I~~~GaI~~LV~LL~~~~~~~~~~A~~aL~nLs 535 (710)
+++++..|++.|+||+|+++|.++++++++.|+++|.||+
T Consensus 1 ~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 1 SPENKQAIVEAGGIPPLVQLLKSPDPEVQEEAAWALGNLA 40 (41)
T ss_dssp SHHHHHHHHHTTHHHHHHHHTTSSSHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHcccHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 3678999999999999999999999999999999999997
|
Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B .... |
| >KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.79 E-value=9.5e-05 Score=67.90 Aligned_cols=150 Identities=17% Similarity=0.106 Sum_probs=123.5
Q ss_pred hhCcHHHHHHhhc-CCCHHHHHHHHHHHHHhccCcccccccccccchhchHHhhcC--chHHHHHHHHHHHHhcCcchHH
Q 036199 505 ASGALASILNMLD-SPNGKFQELAIKILHNLSSDVDIQSHIAPSEFLPKLVPFLKD--ATLAVSCLVILKNMCNTEHARV 581 (710)
Q Consensus 505 ~~GaI~~LV~LL~-~~~~~~~~~A~~aL~nLs~~~en~~~iv~aG~V~~Lv~lL~~--~~~~~~al~iL~nLa~~~e~r~ 581 (710)
..|-+..||+=.. ..+.+.++....-|.|.+.++-|-..+.+..+++..++-|.+ ..+.+.+++.|.|||-.+.+..
T Consensus 14 Rl~Ylq~LV~efq~tt~~eakeqv~ANLANFAYDP~Nys~Lrql~vLdlFvdsl~e~ne~LvefgIgglCNlC~d~~n~~ 93 (173)
T KOG4646|consen 14 RLEYLQHLVDEFQTTTNIEAKEQVTANLANFAYDPINYSHLRQLDVLDLFVDSLEEQNELLVEFGIGGLCNLCLDKTNAK 93 (173)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccCcchHHHHHHhhHHHHHHHHhhcccHHHHHHhHHHHHhhccChHHHH
Confidence 3455777777664 457899999999999999999999999999999999999965 4579999999999999999999
Q ss_pred HHHhhcCChHHHHHHhhcCCHHHHHHHHHHHHHHhcCChHHHHHHHhCCchHHHHHHhhcCCHHHHHHHHHHHH
Q 036199 582 CVVETSGCLPSVAELLEIGSEEDQEHAVAILLCLCSQRDQYCKLVMNEGVIPSLVKISVYGNDKAKVSALELRR 655 (710)
Q Consensus 582 ~i~~~~g~I~~Lv~lL~~~s~~~ke~A~~aL~~Lc~~~~~~~~~v~~~G~v~~Lv~L~~~gt~~~k~kA~~LL~ 655 (710)
.|.+ ++++|.++..+.+.....--.|+..|..||-.+...+..+....++........+.+-+-+--|...|.
T Consensus 94 ~I~e-a~g~plii~~lssp~e~tv~sa~~~l~~l~~~~Rt~r~ell~p~Vv~~v~r~~~s~s~~~rnLa~~fl~ 166 (173)
T KOG4646|consen 94 FIRE-ALGLPLIIFVLSSPPEITVHSAALFLQLLEFGERTERDELLSPAVVRTVQRWRESKSHDERNLASAFLD 166 (173)
T ss_pred HHHH-hcCCceEEeecCCChHHHHHHHHHHHHHhcCcccchhHHhccHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 9998 899999999998888888888999999999988777888887777777666554445555555555554
|
|
| >PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.0018 Score=79.61 Aligned_cols=214 Identities=14% Similarity=0.069 Sum_probs=138.7
Q ss_pred hhhcCCCHHHHHHHHHHHHHHHccCcccchhcccCCcHHHHHHHhhccccCCCHHHHHHHHHHHHHHhccCCCCCccccc
Q 036199 388 SRLTELNWDCQCKVIEDYETRLEHDNQVSHSLSSTNFVEPLIRFLRDARDLHDSRAQRIGCRLLLAFVSKNRSGIPYLNE 467 (710)
Q Consensus 388 ~~L~s~~~e~q~~Al~~L~~Lak~~~~~r~~I~~~G~I~~LV~lL~s~~~~~d~~~q~~A~~~L~nL~~~~~~k~~i~~~ 467 (710)
..|...+.+++..|+..|..+...- ...+.|...|.+ .|+.++..|+.+|..+. .
T Consensus 659 ~aL~D~d~~VR~~Aa~aL~~l~~~~----------~~~~~L~~~L~~----~d~~VR~~A~~aL~~~~-----------~ 713 (897)
T PRK13800 659 AALGDGAAAVRRAAAEGLRELVEVL----------PPAPALRDHLGS----PDPVVRAAALDVLRALR-----------A 713 (897)
T ss_pred HHHcCCCHHHHHHHHHHHHHHHhcc----------CchHHHHHHhcC----CCHHHHHHHHHHHHhhc-----------c
Confidence 5566778888888888877664211 112455566654 56666666666665541 1
Q ss_pred cchHHHHHHhccCcHH--HHHHHHHHHhc---------cC--chhhHHH----h-----hhCcHHHHHHhhcCCCHHHHH
Q 036199 468 DLFSLLASFLHSAAAT--EETLAILVALS---------SY--AYFISKI----V-----ASGALASILNMLDSPNGKFQE 525 (710)
Q Consensus 468 gaI~~LV~lL~s~~~~--~~Aa~~L~~Ls---------~~--~~nk~~I----~-----~~GaI~~LV~LL~~~~~~~~~ 525 (710)
+....|+..|.+++.. ..|+.+|..+. .+ ...|... + ..+.++.|+.++.++++.++.
T Consensus 714 ~~~~~l~~~L~D~d~~VR~~Av~aL~~~~~~~~l~~~l~D~~~~VR~~aa~aL~~~~~~~~~~~~~L~~ll~D~d~~VR~ 793 (897)
T PRK13800 714 GDAALFAAALGDPDHRVRIEAVRALVSVDDVESVAGAATDENREVRIAVAKGLATLGAGGAPAGDAVRALTGDPDPLVRA 793 (897)
T ss_pred CCHHHHHHHhcCCCHHHHHHHHHHHhcccCcHHHHHHhcCCCHHHHHHHHHHHHHhccccchhHHHHHHHhcCCCHHHHH
Confidence 1123444555544431 23333333221 11 1111111 1 123478999999999999999
Q ss_pred HHHHHHHHhccCcccccccccccchhchHHhhcCc--hHHHHHHHHHHHHhcCcchHHHHHhhcCChHHHHHHhhcCCHH
Q 036199 526 LAIKILHNLSSDVDIQSHIAPSEFLPKLVPFLKDA--TLAVSCLVILKNMCNTEHARVCVVETSGCLPSVAELLEIGSEE 603 (710)
Q Consensus 526 ~A~~aL~nLs~~~en~~~iv~aG~V~~Lv~lL~~~--~~~~~al~iL~nLa~~~e~r~~i~~~~g~I~~Lv~lL~~~s~~ 603 (710)
.|+.+|.++... ..+++.|+..|.++ .++..|+.+|..+.. ...++.|+.+|...+..
T Consensus 794 aA~~aLg~~g~~---------~~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~-----------~~a~~~L~~~L~D~~~~ 853 (897)
T PRK13800 794 AALAALAELGCP---------PDDVAAATAALRASAWQVRQGAARALAGAAA-----------DVAVPALVEALTDPHLD 853 (897)
T ss_pred HHHHHHHhcCCc---------chhHHHHHHHhcCCChHHHHHHHHHHHhccc-----------cchHHHHHHHhcCCCHH
Confidence 999999888532 12335688888665 467778888876532 34679999999999999
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHhCCchHHHHHHhhcCCHHHHHHHHHHHHH
Q 036199 604 DQEHAVAILLCLCSQRDQYCKLVMNEGVIPSLVKISVYGNDKAKVSALELRRL 656 (710)
Q Consensus 604 ~ke~A~~aL~~Lc~~~~~~~~~v~~~G~v~~Lv~L~~~gt~~~k~kA~~LL~~ 656 (710)
++..|+.+|..+. .++ .+.+.|...+.+.+..+|+.|...|..
T Consensus 854 VR~~A~~aL~~~~-~~~---------~a~~~L~~al~D~d~~Vr~~A~~aL~~ 896 (897)
T PRK13800 854 VRKAAVLALTRWP-GDP---------AARDALTTALTDSDADVRAYARRALAH 896 (897)
T ss_pred HHHHHHHHHhccC-CCH---------HHHHHHHHHHhCCCHHHHHHHHHHHhh
Confidence 9999999998862 221 236788889999999999999998864
|
|
| >PF05536 Neurochondrin: Neurochondrin | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.00038 Score=80.22 Aligned_cols=151 Identities=20% Similarity=0.253 Sum_probs=116.3
Q ss_pred cchHHHHHHhccCcHHH--HHHHHHHHhccCch----hhHHHhhhCcHHHHHHhhcCC-------CHHHHHHHHHHHHHh
Q 036199 468 DLFSLLASFLHSAAATE--ETLAILVALSSYAY----FISKIVASGALASILNMLDSP-------NGKFQELAIKILHNL 534 (710)
Q Consensus 468 gaI~~LV~lL~s~~~~~--~Aa~~L~~Ls~~~~----nk~~I~~~GaI~~LV~LL~~~-------~~~~~~~A~~aL~nL 534 (710)
..+...+.+|++....+ .++..+..+...++ .+..|.++=+...|-+||+++ ....+..|+.+|..+
T Consensus 5 ~~l~~c~~lL~~~~D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~f 84 (543)
T PF05536_consen 5 ASLEKCLSLLKSADDTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLAAF 84 (543)
T ss_pred HHHHHHHHHhccCCcHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHH
Confidence 34667778888776433 44445556665433 344566766678888999773 356778899999999
Q ss_pred ccCcccccccccccchhchHHhhcC--c-hHHHHHHHHHHHHhcCcchHHHHHhhcCChHHHHHHhhcCCHHHHHHHHHH
Q 036199 535 SSDVDIQSHIAPSEFLPKLVPFLKD--A-TLAVSCLVILKNMCNTEHARVCVVETSGCLPSVAELLEIGSEEDQEHAVAI 611 (710)
Q Consensus 535 s~~~en~~~iv~aG~V~~Lv~lL~~--~-~~~~~al~iL~nLa~~~e~r~~i~~~~g~I~~Lv~lL~~~s~~~ke~A~~a 611 (710)
|..++....=-=.+-||.|++.+.. . .+...|+.+|..++.+++|+.++.+ .|+|+.|++.+.+ .+...+.|+.+
T Consensus 85 ~~~~~~a~~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~~~G~~aLl~-~g~v~~L~ei~~~-~~~~~E~Al~l 162 (543)
T PF05536_consen 85 CRDPELASSPQMVSRIPLLLEILSSSSDLETVDDALQCLLAIASSPEGAKALLE-SGAVPALCEIIPN-QSFQMEIALNL 162 (543)
T ss_pred cCChhhhcCHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHcCcHhHHHHHh-cCCHHHHHHHHHh-CcchHHHHHHH
Confidence 9977665432225789999999943 4 6799999999999999999999999 7999999999987 77789999999
Q ss_pred HHHHhcCCh
Q 036199 612 LLCLCSQRD 620 (710)
Q Consensus 612 L~~Lc~~~~ 620 (710)
|.+++....
T Consensus 163 L~~Lls~~~ 171 (543)
T PF05536_consen 163 LLNLLSRLG 171 (543)
T ss_pred HHHHHHhcc
Confidence 999988663
|
|
| >cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.0011 Score=73.57 Aligned_cols=204 Identities=14% Similarity=0.172 Sum_probs=143.1
Q ss_pred CHHHHHHHHHHHHHHHccCcccchhccc-----CCcHHHHHHHhhccccCCCHHHHHHHHHHHHHHhccCCCCCcccccc
Q 036199 394 NWDCQCKVIEDYETRLEHDNQVSHSLSS-----TNFVEPLIRFLRDARDLHDSRAQRIGCRLLLAFVSKNRSGIPYLNED 468 (710)
Q Consensus 394 ~~e~q~~Al~~L~~Lak~~~~~r~~I~~-----~G~I~~LV~lL~s~~~~~d~~~q~~A~~~L~nL~~~~~~k~~i~~~g 468 (710)
..+...-.+.-+-.+...++..-..+.+ .....+++.+|.+ .|.-++..|+.+|..+......+. ...
T Consensus 67 ~~d~vqyvL~Li~dll~~~~~~~~~f~~~~~~~~~~~~~fl~lL~~----~d~~i~~~a~~iLt~l~~~~~~~~---~~~ 139 (429)
T cd00256 67 KDDTVRYVLTLIDDMLQEDDTRVKLFHDDALLKKKTWEPFFNLLNR----QDQFIVHMSFSILAKLACFGLAKM---EGS 139 (429)
T ss_pred cHHHHHHHHHHHHHHHHhchHHHHHHHHHhhccccchHHHHHHHcC----CchhHHHHHHHHHHHHHhcCcccc---chh
Confidence 3444444555555666555543333333 3567788888876 678889999999988855332221 122
Q ss_pred chH----HHHHHhccCcH---HHHHHHHHHHhccCchhhHHHhhhCcHHHHHHhhcCC--CHHHHHHHHHHHHHhccCcc
Q 036199 469 LFS----LLASFLHSAAA---TEETLAILVALSSYAYFISKIVASGALASILNMLDSP--NGKFQELAIKILHNLSSDVD 539 (710)
Q Consensus 469 aI~----~LV~lL~s~~~---~~~Aa~~L~~Ls~~~~nk~~I~~~GaI~~LV~LL~~~--~~~~~~~A~~aL~nLs~~~e 539 (710)
.++ .|...|++++. ..-|+..|..|...+++|..+.+.+++++|+++|+.. +.+.+-.++-++|-||.+++
T Consensus 140 ~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~~~~R~~f~~~~~v~~L~~~L~~~~~~~Ql~Y~~ll~lWlLSF~~~ 219 (429)
T cd00256 140 DLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRVDEYRFAFVLADGVPTLVKLLSNATLGFQLQYQSIFCIWLLTFNPH 219 (429)
T ss_pred HHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCCchHHHHHHHccCHHHHHHHHhhccccHHHHHHHHHHHHHHhccHH
Confidence 333 44455554332 2577888999999999999999988999999999753 46888999999999999988
Q ss_pred cccccccccchhchHHhhcC---chHHHHHHHHHHHHhcCc-------chHHHHHhhcCChHHHHHHhhc---CCHHHHH
Q 036199 540 IQSHIAPSEFLPKLVPFLKD---ATLAVSCLVILKNMCNTE-------HARVCVVETSGCLPSVAELLEI---GSEEDQE 606 (710)
Q Consensus 540 n~~~iv~aG~V~~Lv~lL~~---~~~~~~al~iL~nLa~~~-------e~r~~i~~~~g~I~~Lv~lL~~---~s~~~ke 606 (710)
....+...|.|+.|++++.. +.+++-++++|.||...+ .....+++ . +++.++..|.. ++++..+
T Consensus 220 ~~~~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~mv~-~-~l~~~l~~L~~rk~~DedL~e 297 (429)
T cd00256 220 AAEVLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLISKRVDREVKKTAALQMVQ-C-KVLKTLQSLEQRKYDDEDLTD 297 (429)
T ss_pred HHHhhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcccccchhhhHHHHHHH-c-ChHHHHHHHhcCCCCcHHHHH
Confidence 88888889999999999954 578999999999999843 12234555 3 45667777764 4555544
|
The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example. |
| >TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1 | Back alignment and domain information |
|---|
Probab=97.73 E-value=4e-05 Score=80.38 Aligned_cols=63 Identities=19% Similarity=0.345 Sum_probs=47.7
Q ss_pred CcccccCCccc-cCCce----ecCCCCccchhhHHHHhhhCCCCCCCCCCccCCCC----CcccHHHHHHHH
Q 036199 267 EVFKCPLSLRL-MYDPV----VIESGQTFERMWIQKWFEEGNHTCPKTKMKLVCQS----LTPNTAMKDLIS 329 (710)
Q Consensus 267 ~~f~CPI~~~~-m~DPV----~~~~G~ty~r~~I~~w~~~g~~~cP~t~~~l~~~~----l~pN~~l~~~i~ 329 (710)
++..||+|+.- ...|- +.+|||+||++||.+.|..|...||.|+.++.... +.++..+.+-|.
T Consensus 2 d~~~CP~Ck~~~y~np~~kl~i~~CGH~~C~sCv~~l~~~~~~~CP~C~~~lrk~~fr~q~F~D~~vekEV~ 73 (309)
T TIGR00570 2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGSGSCPECDTPLRKNNFRVQLFEDPTVEKEVD 73 (309)
T ss_pred CCCCCCcCCCCCccCcccccccCCCCCcccHHHHHHHhcCCCCCCCCCCCccchhhccccccccHHHHHHHH
Confidence 46789999982 33442 22799999999999988888889999999988766 555655555554
|
All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.72 E-value=5.6e-06 Score=86.51 Aligned_cols=67 Identities=31% Similarity=0.467 Sum_probs=54.9
Q ss_pred CCCCcccccCCccccCCceec-CCCCccchhhHHHHhhhCCCCCCCCCCccCC-CCCcccHHHHHHHHH
Q 036199 264 IIPEVFKCPLSLRLMYDPVVI-ESGQTFERMWIQKWFEEGNHTCPKTKMKLVC-QSLTPNTAMKDLISK 330 (710)
Q Consensus 264 ~~p~~f~CPI~~~~m~DPV~~-~~G~ty~r~~I~~w~~~g~~~cP~t~~~l~~-~~l~pN~~l~~~i~~ 330 (710)
.+-.+|.||||+.+++--.++ .|+|.||+.||-+-+..|+++||.|++.+.. ..|.++-..-.+|.+
T Consensus 39 ~~~~~v~c~icl~llk~tmttkeClhrfc~~ci~~a~r~gn~ecptcRk~l~SkrsLr~Dp~fdaLis~ 107 (381)
T KOG0311|consen 39 MFDIQVICPICLSLLKKTMTTKECLHRFCFDCIWKALRSGNNECPTCRKKLVSKRSLRIDPNFDALISK 107 (381)
T ss_pred HhhhhhccHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcCCCCchHHhhccccccCCCCccHHHHHHH
Confidence 455689999999999999887 8999999999999999999999999999865 467655444444443
|
|
| >PHA02926 zinc finger-like protein; Provisional | Back alignment and domain information |
|---|
Probab=97.71 E-value=2.3e-05 Score=77.41 Aligned_cols=56 Identities=14% Similarity=0.397 Sum_probs=44.2
Q ss_pred CCCCcccccCCccccCC---------ceecCCCCccchhhHHHHhhhC-----CCCCCCCCCccCCCCCccc
Q 036199 264 IIPEVFKCPLSLRLMYD---------PVVIESGQTFERMWIQKWFEEG-----NHTCPKTKMKLVCQSLTPN 321 (710)
Q Consensus 264 ~~p~~f~CPI~~~~m~D---------PV~~~~G~ty~r~~I~~w~~~g-----~~~cP~t~~~l~~~~l~pN 321 (710)
....+..|+||++...+ ++..+|||+||..||.+|.... ..+||.|++.+. .++|+
T Consensus 166 ~~SkE~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~--~I~pS 235 (242)
T PHA02926 166 RVSKEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRRETGASDNCPICRTRFR--NITMS 235 (242)
T ss_pred hccCCCCCccCccccccccccccccccccCCCCchHHHHHHHHHHHhccccCcCCcCCCCcceee--eeccc
Confidence 45667899999998755 4677999999999999998742 456999998765 34454
|
|
| >KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.71 E-value=2.2e-05 Score=80.31 Aligned_cols=54 Identities=24% Similarity=0.407 Sum_probs=47.0
Q ss_pred CCCcccccCCccccCCceecCCCCccchhhHHHHhhhCCCCCCCCCCccCCCCCc
Q 036199 265 IPEVFKCPLSLRLMYDPVVIESGQTFERMWIQKWFEEGNHTCPKTKMKLVCQSLT 319 (710)
Q Consensus 265 ~p~~f~CPI~~~~m~DPV~~~~G~ty~r~~I~~w~~~g~~~cP~t~~~l~~~~l~ 319 (710)
.+..+.|-||++-+.||--++|||-||=+||..|..+ ..-||.|++++.+..++
T Consensus 236 ~~a~~kC~LCLe~~~~pSaTpCGHiFCWsCI~~w~~e-k~eCPlCR~~~~pskvi 289 (293)
T KOG0317|consen 236 PEATRKCSLCLENRSNPSATPCGHIFCWSCILEWCSE-KAECPLCREKFQPSKVI 289 (293)
T ss_pred CCCCCceEEEecCCCCCCcCcCcchHHHHHHHHHHcc-ccCCCcccccCCCccee
Confidence 3456999999999999999999999999999999975 34599999998887643
|
|
| >KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.00035 Score=64.24 Aligned_cols=119 Identities=18% Similarity=0.145 Sum_probs=98.4
Q ss_pred ccchHHHHHHhccCcH---HHHHHHHHHHhccCchhhHHHhhhCcHHHHHHhhcCCCHHHHHHHHHHHHHhccCcccccc
Q 036199 467 EDLFSLLASFLHSAAA---TEETLAILVALSSYAYFISKIVASGALASILNMLDSPNGKFQELAIKILHNLSSDVDIQSH 543 (710)
Q Consensus 467 ~gaI~~LV~lL~s~~~---~~~Aa~~L~~Ls~~~~nk~~I~~~GaI~~LV~LL~~~~~~~~~~A~~aL~nLs~~~en~~~ 543 (710)
-+-+..||.=...... ++...+-|.|.+-++.|-..+.+..++...|+-|.+.+.-.++.+++.|+|||.++.|+..
T Consensus 15 l~Ylq~LV~efq~tt~~eakeqv~ANLANFAYDP~Nys~Lrql~vLdlFvdsl~e~ne~LvefgIgglCNlC~d~~n~~~ 94 (173)
T KOG4646|consen 15 LEYLQHLVDEFQTTTNIEAKEQVTANLANFAYDPINYSHLRQLDVLDLFVDSLEEQNELLVEFGIGGLCNLCLDKTNAKF 94 (173)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhccCcchHHHHHHhhHHHHHHHHhhcccHHHHHHhHHHHHhhccChHHHHH
Confidence 3455666665543332 3577788888889999999999999999999999999999999999999999999999999
Q ss_pred cccccchhchHHhhcCc--hHHHHHHHHHHHHhc-CcchHHHHHh
Q 036199 544 IAPSEFLPKLVPFLKDA--TLAVSCLVILKNMCN-TEHARVCVVE 585 (710)
Q Consensus 544 iv~aG~V~~Lv~lL~~~--~~~~~al~iL~nLa~-~~e~r~~i~~ 585 (710)
|++++++|..+..++++ .....|+..|..|+. ....|..+..
T Consensus 95 I~ea~g~plii~~lssp~e~tv~sa~~~l~~l~~~~Rt~r~ell~ 139 (173)
T KOG4646|consen 95 IREALGLPLIIFVLSSPPEITVHSAALFLQLLEFGERTERDELLS 139 (173)
T ss_pred HHHhcCCceEEeecCCChHHHHHHHHHHHHHhcCcccchhHHhcc
Confidence 99999999999999875 457788888888887 3444566655
|
|
| >KOG2973 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.0033 Score=65.52 Aligned_cols=262 Identities=16% Similarity=0.226 Sum_probs=173.6
Q ss_pred hhhcCCCHHHHHHHHHHHHHHHccCcccchhcc-cCCcHHHHHHHhhccccCCCHHHHHHHHHHHHHHhccCCCCCcccc
Q 036199 388 SRLTELNWDCQCKVIEDYETRLEHDNQVSHSLS-STNFVEPLIRFLRDARDLHDSRAQRIGCRLLLAFVSKNRSGIPYLN 466 (710)
Q Consensus 388 ~~L~s~~~e~q~~Al~~L~~Lak~~~~~r~~I~-~~G~I~~LV~lL~s~~~~~d~~~q~~A~~~L~nL~~~~~~k~~i~~ 466 (710)
..|++.++.++..|+..+..+... ..+.+.. +.-.++.+.+++.. .++ -+.|+++|.|++.+...+..++.
T Consensus 10 ~ll~~~sP~v~~~AV~~l~~lt~~--~~~~~~~~~~~~lk~l~qL~~~----~~~--~~~a~~alVnlsq~~~l~~~ll~ 81 (353)
T KOG2973|consen 10 ELLHSLSPPVRKAAVEHLLGLTGR--GLQSLSKYSEALLKDLTQLLKD----LDP--AEPAATALVNLSQKEELRKKLLQ 81 (353)
T ss_pred HHhccCChHHHHHHHHHHhhcccc--chhhhccchhhhHHHHHHHccC----ccc--ccHHHHHHHHHHhhHHHHHHHHH
Confidence 456777888888888888777655 3344432 34578888888865 233 56799999999888765555554
Q ss_pred ccchHHHHHHhccCcH--HHHHHHHHHHhccCchhhHHHhh-------hCcHHHHHHhhcCCCH--HHHHHHHHHHHHhc
Q 036199 467 EDLFSLLASFLHSAAA--TEETLAILVALSSYAYFISKIVA-------SGALASILNMLDSPNG--KFQELAIKILHNLS 535 (710)
Q Consensus 467 ~gaI~~LV~lL~s~~~--~~~Aa~~L~~Ls~~~~nk~~I~~-------~GaI~~LV~LL~~~~~--~~~~~A~~aL~nLs 535 (710)
. .+..++.++.++.. ....+..|.||+..+.....+.. +|.+...+...+.+-. .-....+-.+.||+
T Consensus 82 ~-~~k~l~~~~~~p~~~lad~~cmlL~NLs~~~~~~~~ll~~~~~~~~~~lm~l~~~~~d~~~n~~a~f~ylA~vf~nls 160 (353)
T KOG2973|consen 82 D-LLKVLMDMLTDPQSPLADLICMLLSNLSRDDDEVAALLTNLTEKKDSGLMRLARAFCDKSYNAYAEFHYLAPVFANLS 160 (353)
T ss_pred H-HHHHHHHHhcCcccchHHHHHHHHHHhccCchHHHHHHHhcccccccchHHHHHHHhCcccccccchhHHHHHHHHHh
Confidence 4 77777777776633 26788889999988776555442 3444444445443322 33456677888999
Q ss_pred cCcccccccccccchhc--hHHhhcCc-hH-HHHHHHHHHHHhcCcchHHHHHhhcCChHHHH-----------------
Q 036199 536 SDVDIQSHIAPSEFLPK--LVPFLKDA-TL-AVSCLVILKNMCNTEHARVCVVETSGCLPSVA----------------- 594 (710)
Q Consensus 536 ~~~en~~~iv~aG~V~~--Lv~lL~~~-~~-~~~al~iL~nLa~~~e~r~~i~~~~g~I~~Lv----------------- 594 (710)
.....+..+.....++. |+.+=... .+ ..-.+++|.|.|-.......+.. . .+..|.
T Consensus 161 ~~~~gR~l~~~~k~~p~~kll~ft~~~s~vRr~GvagtlkN~cFd~~~h~~lL~-e-~~~lLp~iLlPlagpee~sEEdm 238 (353)
T KOG2973|consen 161 QFEAGRKLLLEPKRFPDQKLLPFTSEDSQVRRGGVAGTLKNCCFDAKLHEVLLD-E-SINLLPAILLPLAGPEELSEEDM 238 (353)
T ss_pred hhhhhhhHhcchhhhhHhhhhcccccchhhhccchHHHHHhhhccchhHHHHhc-c-hHHHHHHHHhhcCCccccCHHHH
Confidence 98888888776654433 22222211 22 33457788887775555544443 1 122222
Q ss_pred -------HHhh-----cCCHHHHHHHHHHHHHHhcCChHHHHHHHhCCchHHHHHHhhc-CCHHHHHHHHHHHHHhhhcc
Q 036199 595 -------ELLE-----IGSEEDQEHAVAILLCLCSQRDQYCKLVMNEGVIPSLVKISVY-GNDKAKVSALELRRLLRDVA 661 (710)
Q Consensus 595 -------~lL~-----~~s~~~ke~A~~aL~~Lc~~~~~~~~~v~~~G~v~~Lv~L~~~-gt~~~k~kA~~LL~~l~~~~ 661 (710)
++|. ..++.++..-+.+|+.||.-. .-|..+...|+.|.|-++=.. .++.+++.+-.+.+.|-+-.
T Consensus 239 ~~LP~eLQyLp~dKeRepdpdIrk~llEai~lLcaT~-~GRe~lR~kgvYpilRElhk~e~ded~~~ace~vvq~Lv~~e 317 (353)
T KOG2973|consen 239 AKLPVELQYLPEDKEREPDPDIRKMLLEALLLLCATR-AGREVLRSKGVYPILRELHKWEEDEDIREACEQVVQMLVRLE 317 (353)
T ss_pred hcCCHhhhcCCccccCCCChHHHHHHHHHHHHHHhhh-HhHHHHHhcCchHHHHHHhcCCCcHHHHHHHHHHHHHHHhcc
Confidence 3332 358889999999999999987 567888899998888777444 46778888888888777643
|
|
| >KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.0051 Score=70.90 Aligned_cols=241 Identities=17% Similarity=0.259 Sum_probs=174.1
Q ss_pred HHHHHHHHHHHHHHHccCcccchhcccCCcHHHHHHHhhccccCCCHHHHHHHHHHHHHHhccCC-------CC------
Q 036199 395 WDCQCKVIEDYETRLEHDNQVSHSLSSTNFVEPLIRFLRDARDLHDSRAQRIGCRLLLAFVSKNR-------SG------ 461 (710)
Q Consensus 395 ~e~q~~Al~~L~~Lak~~~~~r~~I~~~G~I~~LV~lL~s~~~~~d~~~q~~A~~~L~nL~~~~~-------~k------ 461 (710)
.+.++.|+..|+.+++. +|..++ .-++++|+..|..+ ..|++....++..++++.++++ .+
T Consensus 37 ~eDRR~A~rgLKa~srk---YR~~Vg-a~Gmk~li~vL~~D--~~D~E~ik~~LdTl~il~~~dd~~~v~dds~qsdd~g 110 (970)
T KOG0946|consen 37 LEDRRDAVRGLKAFSRK---YREEVG-AQGMKPLIQVLQRD--YMDPEIIKYALDTLLILTSHDDSPEVMDDSTQSDDLG 110 (970)
T ss_pred hhhHHHHHHHHHHHHHH---HHHHHH-HcccHHHHHHHhhc--cCCHHHHHHHHHHHHHHHhcCcchhhcccchhhhHHH
Confidence 56788999999998863 555544 45689999999873 4789999999999999965432 22
Q ss_pred -----CccccccchHHHHHHhccCcH--HHHHHHHHHHhc--cCchhhHHHhh-hCcHHHHHHhhcCCCHHHHHHHHHHH
Q 036199 462 -----IPYLNEDLFSLLASFLHSAAA--TEETLAILVALS--SYAYFISKIVA-SGALASILNMLDSPNGKFQELAIKIL 531 (710)
Q Consensus 462 -----~~i~~~gaI~~LV~lL~s~~~--~~~Aa~~L~~Ls--~~~~nk~~I~~-~GaI~~LV~LL~~~~~~~~~~A~~aL 531 (710)
..|...+-|..|+..+..-+- +..|+..|.+|- ...+.+..+.. +-+|..|+++|.+.-..++-+|+-.|
T Consensus 111 ~~iae~fik~qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL~DsrE~IRNe~iLlL 190 (970)
T KOG0946|consen 111 LWIAEQFIKNQDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLLRDSREPIRNEAILLL 190 (970)
T ss_pred HHHHHHHHcCchhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHHhhhhhhhchhHHHHH
Confidence 122356678888888776553 357888887765 34456666664 78899999999988888999999999
Q ss_pred HHhccCccccccccc-ccchhchHHhhcC-----c-hHHHHHHHHHHHHhc-CcchHHHHHhhcCChHHHHHHhhc---C
Q 036199 532 HNLSSDVDIQSHIAP-SEFLPKLVPFLKD-----A-TLAVSCLVILKNMCN-TEHARVCVVETSGCLPSVAELLEI---G 600 (710)
Q Consensus 532 ~nLs~~~en~~~iv~-aG~V~~Lv~lL~~-----~-~~~~~al~iL~nLa~-~~e~r~~i~~~~g~I~~Lv~lL~~---~ 600 (710)
..|..+..+...+|. .++...|..++.+ + -+++.|+..|.||-. +..+...+.+ .+-||.|.++|.. +
T Consensus 191 ~eL~k~n~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N~SNQ~~FrE-~~~i~rL~klL~~f~~~ 269 (970)
T KOG0946|consen 191 SELVKDNSSIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNNISNQNFFRE-GSYIPRLLKLLSVFEFG 269 (970)
T ss_pred HHHHccCchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhCcchhhHHhc-cccHHHHHhhcCccccc
Confidence 999988877777776 8999999999943 2 358999999999988 5566666666 7899999988863 3
Q ss_pred CH-------HHHHH---HHHHHHHHhcCC------hHHHHHHHhCCchHHHHHHhhcC
Q 036199 601 SE-------EDQEH---AVAILLCLCSQR------DQYCKLVMNEGVIPSLVKISVYG 642 (710)
Q Consensus 601 s~-------~~ke~---A~~aL~~Lc~~~------~~~~~~v~~~G~v~~Lv~L~~~g 642 (710)
+. .--.+ |+-++..|-.-+ ..++.++...+++..|..++-+.
T Consensus 270 d~Ev~~W~~Qrv~Nv~~~Lqivr~lVsP~Nt~~~~~q~qk~l~ss~ll~~Lc~il~~~ 327 (970)
T KOG0946|consen 270 DGEVFGWSTQRVQNVIEALQIVRSLVSPGNTSSITHQNQKALVSSHLLDVLCTILMHP 327 (970)
T ss_pred CcccccccHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcchHHHHHHHHcCC
Confidence 42 11222 233333332211 23456888899999997775544
|
|
| >PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.0029 Score=72.79 Aligned_cols=243 Identities=12% Similarity=0.172 Sum_probs=147.4
Q ss_pred hhhcCCCHHHHHHHHHHHHHHHccCcccchhcccCCcHHHHHHHhhccccCCCHHHHHHHHHHHHHHhccCCCCCccccc
Q 036199 388 SRLTELNWDCQCKVIEDYETRLEHDNQVSHSLSSTNFVEPLIRFLRDARDLHDSRAQRIGCRLLLAFVSKNRSGIPYLNE 467 (710)
Q Consensus 388 ~~L~s~~~e~q~~Al~~L~~Lak~~~~~r~~I~~~G~I~~LV~lL~s~~~~~d~~~q~~A~~~L~nL~~~~~~k~~i~~~ 467 (710)
..|.+.++..+.-|+..|..+. +++.. .-.++.+.++|.+ +++-+++.|+.++..+...... .+...
T Consensus 86 kdl~~~n~~~~~lAL~~l~~i~--~~~~~-----~~l~~~v~~ll~~----~~~~VRk~A~~~l~~i~~~~p~--~~~~~ 152 (526)
T PF01602_consen 86 KDLNSPNPYIRGLALRTLSNIR--TPEMA-----EPLIPDVIKLLSD----PSPYVRKKAALALLKIYRKDPD--LVEDE 152 (526)
T ss_dssp HHHCSSSHHHHHHHHHHHHHH---SHHHH-----HHHHHHHHHHHHS----SSHHHHHHHHHHHHHHHHHCHC--CHHGG
T ss_pred HhhcCCCHHHHHHHHhhhhhhc--ccchh-----hHHHHHHHHHhcC----CchHHHHHHHHHHHHHhccCHH--HHHHH
Confidence 4567778888888888887765 22211 2256777777776 7889999999999998654322 11122
Q ss_pred cchHHHHHHhccCcHH--HHHHHHHHHh-ccCchhhHHHhhhCcHHHHHHhhcCCCHHHHHHHHHHHHHhccCccccccc
Q 036199 468 DLFSLLASFLHSAAAT--EETLAILVAL-SSYAYFISKIVASGALASILNMLDSPNGKFQELAIKILHNLSSDVDIQSHI 544 (710)
Q Consensus 468 gaI~~LV~lL~s~~~~--~~Aa~~L~~L-s~~~~nk~~I~~~GaI~~LV~LL~~~~~~~~~~A~~aL~nLs~~~en~~~i 544 (710)
.++.+..+|.+.+.. .+|+.++..+ ...+.+. . .-...+..|.+++...++-.+..++..|..++........-
T Consensus 153 -~~~~l~~lL~d~~~~V~~~a~~~l~~i~~~~~~~~-~-~~~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~~~~~~~~~ 229 (526)
T PF01602_consen 153 -LIPKLKQLLSDKDPSVVSAALSLLSEIKCNDDSYK-S-LIPKLIRILCQLLSDPDPWLQIKILRLLRRYAPMEPEDADK 229 (526)
T ss_dssp -HHHHHHHHTTHSSHHHHHHHHHHHHHHHCTHHHHT-T-HHHHHHHHHHHHHTCCSHHHHHHHHHHHTTSTSSSHHHHHH
T ss_pred -HHHHHhhhccCCcchhHHHHHHHHHHHccCcchhh-h-hHHHHHHHhhhcccccchHHHHHHHHHHHhcccCChhhhhH
Confidence 689999999877653 4777777777 2111111 1 11233455555556778888888888888777533222100
Q ss_pred ccccchhchHHhhcC--chHHHHHHHHHHHHhcCcchHHHHHhhcCChHHHHHHhhcCCHHHHHHHHHHHHHHhcCChHH
Q 036199 545 APSEFLPKLVPFLKD--ATLAVSCLVILKNMCNTEHARVCVVETSGCLPSVAELLEIGSEEDQEHAVAILLCLCSQRDQY 622 (710)
Q Consensus 545 v~aG~V~~Lv~lL~~--~~~~~~al~iL~nLa~~~e~r~~i~~~~g~I~~Lv~lL~~~s~~~ke~A~~aL~~Lc~~~~~~ 622 (710)
...++.+..++.+ +.+.-.|+.++..+...+. +.. .+++.|+.+|.+.++..+-.++..|..++...+
T Consensus 230 --~~~i~~l~~~l~s~~~~V~~e~~~~i~~l~~~~~----~~~--~~~~~L~~lL~s~~~nvr~~~L~~L~~l~~~~~-- 299 (526)
T PF01602_consen 230 --NRIIEPLLNLLQSSSPSVVYEAIRLIIKLSPSPE----LLQ--KAINPLIKLLSSSDPNVRYIALDSLSQLAQSNP-- 299 (526)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSHH----HHH--HHHHHHHHHHTSSSHHHHHHHHHHHHHHCCHCH--
T ss_pred --HHHHHHHHHHhhccccHHHHHHHHHHHHhhcchH----HHH--hhHHHHHHHhhcccchhehhHHHHHHHhhcccc--
Confidence 4566667776643 4556667777776666544 222 356777777777777778888888877777661
Q ss_pred HHHHHhCCchHHHHHHhhcCCHHHHHHHHHHHHHhhh
Q 036199 623 CKLVMNEGVIPSLVKISVYGNDKAKVSALELRRLLRD 659 (710)
Q Consensus 623 ~~~v~~~G~v~~Lv~L~~~gt~~~k~kA~~LL~~l~~ 659 (710)
..+. .....+..+..+.+...|.+|..+|..+.+
T Consensus 300 --~~v~-~~~~~~~~l~~~~d~~Ir~~~l~lL~~l~~ 333 (526)
T PF01602_consen 300 --PAVF-NQSLILFFLLYDDDPSIRKKALDLLYKLAN 333 (526)
T ss_dssp --HHHG-THHHHHHHHHCSSSHHHHHHHHHHHHHH--
T ss_pred --hhhh-hhhhhhheecCCCChhHHHHHHHHHhhccc
Confidence 1111 222223333345666667777666665544
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E. |
| >PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.00015 Score=53.34 Aligned_cols=41 Identities=29% Similarity=0.389 Sum_probs=37.9
Q ss_pred CcchHHHHHhhcCChHHHHHHhhcCCHHHHHHHHHHHHHHhc
Q 036199 576 TEHARVCVVETSGCLPSVAELLEIGSEEDQEHAVAILLCLCS 617 (710)
Q Consensus 576 ~~e~r~~i~~~~g~I~~Lv~lL~~~s~~~ke~A~~aL~~Lc~ 617 (710)
+++++..+++ .|+||.|+.+|.++++..+++|+++|.+||.
T Consensus 1 ~~~~~~~i~~-~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~~ 41 (41)
T PF00514_consen 1 SPENKQAIVE-AGGIPPLVQLLKSPDPEVQEEAAWALGNLAA 41 (41)
T ss_dssp SHHHHHHHHH-TTHHHHHHHHTTSSSHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHH-cccHHHHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence 4678899998 8999999999999999999999999999984
|
Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B .... |
| >KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.0015 Score=75.51 Aligned_cols=55 Identities=22% Similarity=0.440 Sum_probs=49.7
Q ss_pred CCcccccCCccccCCceecCCCCccchhhHHHHhhhCCCCCCCCCCccCCCCCcc
Q 036199 266 PEVFKCPLSLRLMYDPVVIESGQTFERMWIQKWFEEGNHTCPKTKMKLVCQSLTP 320 (710)
Q Consensus 266 p~~f~CPI~~~~m~DPV~~~~G~ty~r~~I~~w~~~g~~~cP~t~~~l~~~~l~p 320 (710)
-.-++||.|..=.+|-|++-|||-||-.||+.-+..-+..||.|+..|.+.++.|
T Consensus 641 K~~LkCs~Cn~R~Kd~vI~kC~H~FC~~Cvq~r~etRqRKCP~Cn~aFganDv~~ 695 (698)
T KOG0978|consen 641 KELLKCSVCNTRWKDAVITKCGHVFCEECVQTRYETRQRKCPKCNAAFGANDVHR 695 (698)
T ss_pred HhceeCCCccCchhhHHHHhcchHHHHHHHHHHHHHhcCCCCCCCCCCCcccccc
Confidence 3457899999999999999999999999999999988899999999998777654
|
|
| >KOG2973 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.002 Score=67.04 Aligned_cols=199 Identities=18% Similarity=0.230 Sum_probs=137.6
Q ss_pred HHHHHHHhhccccCCCHHHHHHHHHHHHHHhccCCCCCccc-cccchHHHHHHhccCcHHHHHHHHHHHhccCchhhHHH
Q 036199 425 VEPLIRFLRDARDLHDSRAQRIGCRLLLAFVSKNRSGIPYL-NEDLFSLLASFLHSAAATEETLAILVALSSYAYFISKI 503 (710)
Q Consensus 425 I~~LV~lL~s~~~~~d~~~q~~A~~~L~nL~~~~~~k~~i~-~~gaI~~LV~lL~s~~~~~~Aa~~L~~Ls~~~~nk~~I 503 (710)
...+|.||.+ .++.++..|+.-|..+... ..+.... +...++.+.+++......+.|+.+|.|++.....+..+
T Consensus 5 l~elv~ll~~----~sP~v~~~AV~~l~~lt~~-~~~~~~~~~~~~lk~l~qL~~~~~~~~~a~~alVnlsq~~~l~~~l 79 (353)
T KOG2973|consen 5 LVELVELLHS----LSPPVRKAAVEHLLGLTGR-GLQSLSKYSEALLKDLTQLLKDLDPAEPAATALVNLSQKEELRKKL 79 (353)
T ss_pred HHHHHHHhcc----CChHHHHHHHHHHhhcccc-chhhhccchhhhHHHHHHHccCcccccHHHHHHHHHHhhHHHHHHH
Confidence 3467888877 6789999999989888443 2222221 34567888888876655578999999999999888888
Q ss_pred hhhCcHHHHHHhhcCCCHHHHHHHHHHHHHhccCccccccccc--c----cchhchHHhhcCch-----HHHHHHHHHHH
Q 036199 504 VASGALASILNMLDSPNGKFQELAIKILHNLSSDVDIQSHIAP--S----EFLPKLVPFLKDAT-----LAVSCLVILKN 572 (710)
Q Consensus 504 ~~~GaI~~LV~LL~~~~~~~~~~A~~aL~nLs~~~en~~~iv~--a----G~V~~Lv~lL~~~~-----~~~~al~iL~n 572 (710)
.+. .+..++.++.++.......++.+|.||+..++....+.. . .++.-|+....+.+ -..+-.-++.|
T Consensus 80 l~~-~~k~l~~~~~~p~~~lad~~cmlL~NLs~~~~~~~~ll~~~~~~~~~~lm~l~~~~~d~~~n~~a~f~ylA~vf~n 158 (353)
T KOG2973|consen 80 LQD-LLKVLMDMLTDPQSPLADLICMLLSNLSRDDDEVAALLTNLTEKKDSGLMRLARAFCDKSYNAYAEFHYLAPVFAN 158 (353)
T ss_pred HHH-HHHHHHHHhcCcccchHHHHHHHHHHhccCchHHHHHHHhcccccccchHHHHHHHhCcccccccchhHHHHHHHH
Confidence 877 888888998888777788899999999988776554321 1 33444444443322 24667889999
Q ss_pred HhcCcchHHHHHhhcCChH-HHHHHhhcCCHHHHHHHHHHHHHHhcCChHHHHHHHhCC
Q 036199 573 MCNTEHARVCVVETSGCLP-SVAELLEIGSEEDQEHAVAILLCLCSQRDQYCKLVMNEG 630 (710)
Q Consensus 573 La~~~e~r~~i~~~~g~I~-~Lv~lL~~~s~~~ke~A~~aL~~Lc~~~~~~~~~v~~~G 630 (710)
|+..+.||..+....-+.. .|+.+-..++.--+...+++|.|.|-.. .+...++..+
T Consensus 159 ls~~~~gR~l~~~~k~~p~~kll~ft~~~s~vRr~GvagtlkN~cFd~-~~h~~lL~e~ 216 (353)
T KOG2973|consen 159 LSQFEAGRKLLLEPKRFPDQKLLPFTSEDSQVRRGGVAGTLKNCCFDA-KLHEVLLDES 216 (353)
T ss_pred HhhhhhhhhHhcchhhhhHhhhhcccccchhhhccchHHHHHhhhccc-hhHHHHhcch
Confidence 9999999999887332211 2222212245555778889999977665 5555555544
|
|
| >KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.48 E-value=7.5e-05 Score=82.53 Aligned_cols=69 Identities=20% Similarity=0.422 Sum_probs=59.4
Q ss_pred CCCcccccCCccccCCcee-cCCCCccchhhHHHHhhhCCCCCCCCCCccCCCCCcc-cHHHHHHHHHHHHH
Q 036199 265 IPEVFKCPLSLRLMYDPVV-IESGQTFERMWIQKWFEEGNHTCPKTKMKLVCQSLTP-NTAMKDLISKWCMN 334 (710)
Q Consensus 265 ~p~~f~CPI~~~~m~DPV~-~~~G~ty~r~~I~~w~~~g~~~cP~t~~~l~~~~l~p-N~~l~~~i~~w~~~ 334 (710)
+.+++.||||..++.||+. +.|||.||+.||..|+.. +..||.+.+.+......| -..+++.+..|-..
T Consensus 18 ~~~~l~C~~C~~vl~~p~~~~~cgh~fC~~C~~~~~~~-~~~cp~~~~~~~~~~~~~~~~~~~~~~~~l~i~ 88 (391)
T KOG0297|consen 18 LDENLLCPICMSVLRDPVQTTTCGHRFCAGCLLESLSN-HQKCPVCRQELTQAEELPVPRALRRELLKLPIR 88 (391)
T ss_pred CcccccCccccccccCCCCCCCCCCcccccccchhhcc-CcCCcccccccchhhccCchHHHHHHHHhcccc
Confidence 5677999999999999999 499999999999999987 889999988887776665 45788888887444
|
|
| >PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.0019 Score=74.41 Aligned_cols=241 Identities=15% Similarity=0.154 Sum_probs=158.3
Q ss_pred hhhcCCCHHHHHHHHHHHHHHHccCcccchhcccCCcHHHHHHHhhccccCCCHHHHHHHHHHHHHH-hccCCCCCcccc
Q 036199 388 SRLTELNWDCQCKVIEDYETRLEHDNQVSHSLSSTNFVEPLIRFLRDARDLHDSRAQRIGCRLLLAF-VSKNRSGIPYLN 466 (710)
Q Consensus 388 ~~L~s~~~e~q~~Al~~L~~Lak~~~~~r~~I~~~G~I~~LV~lL~s~~~~~d~~~q~~A~~~L~nL-~~~~~~k~~i~~ 466 (710)
..|.+.++.++.+|+..+..+.+.+++.- ... +++.+.++|.+ .|+.++..|+.++..+ ..+.... -.-
T Consensus 121 ~ll~~~~~~VRk~A~~~l~~i~~~~p~~~---~~~-~~~~l~~lL~d----~~~~V~~~a~~~l~~i~~~~~~~~--~~~ 190 (526)
T PF01602_consen 121 KLLSDPSPYVRKKAALALLKIYRKDPDLV---EDE-LIPKLKQLLSD----KDPSVVSAALSLLSEIKCNDDSYK--SLI 190 (526)
T ss_dssp HHHHSSSHHHHHHHHHHHHHHHHHCHCCH---HGG-HHHHHHHHTTH----SSHHHHHHHHHHHHHHHCTHHHHT--THH
T ss_pred HHhcCCchHHHHHHHHHHHHHhccCHHHH---HHH-HHHHHhhhccC----CcchhHHHHHHHHHHHccCcchhh--hhH
Confidence 45677889999999999999988766532 222 78999999976 7899999999999988 1111101 112
Q ss_pred ccchHHHHHHhccCcHH--HHHHHHHHHhccCchhhHHHhhhCcHHHHHHhhcCCCHHHHHHHHHHHHHhccCccccccc
Q 036199 467 EDLFSLLASFLHSAAAT--EETLAILVALSSYAYFISKIVASGALASILNMLDSPNGKFQELAIKILHNLSSDVDIQSHI 544 (710)
Q Consensus 467 ~gaI~~LV~lL~s~~~~--~~Aa~~L~~Ls~~~~nk~~I~~~GaI~~LV~LL~~~~~~~~~~A~~aL~nLs~~~en~~~i 544 (710)
...+..|.+++...+.. ...+.+|..++........- ...++.+..++.+.++.+.-.|+.++..+...+.
T Consensus 191 ~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~~~~~~~~~--~~~i~~l~~~l~s~~~~V~~e~~~~i~~l~~~~~----- 263 (526)
T PF01602_consen 191 PKLIRILCQLLSDPDPWLQIKILRLLRRYAPMEPEDADK--NRIIEPLLNLLQSSSPSVVYEAIRLIIKLSPSPE----- 263 (526)
T ss_dssp HHHHHHHHHHHTCCSHHHHHHHHHHHTTSTSSSHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSHH-----
T ss_pred HHHHHHhhhcccccchHHHHHHHHHHHhcccCChhhhhH--HHHHHHHHHHhhccccHHHHHHHHHHHHhhcchH-----
Confidence 33444455555555553 46677777666543322210 4568888888888888888899999998886555
Q ss_pred ccccchhchHHhhcC--chHHHHHHHHHHHHhcCcchHHHHHhhcCChHHHHHHhh-cCCHHHHHHHHHHHHHHhcCChH
Q 036199 545 APSEFLPKLVPFLKD--ATLAVSCLVILKNMCNTEHARVCVVETSGCLPSVAELLE-IGSEEDQEHAVAILLCLCSQRDQ 621 (710)
Q Consensus 545 v~aG~V~~Lv~lL~~--~~~~~~al~iL~nLa~~~e~r~~i~~~~g~I~~Lv~lL~-~~s~~~ke~A~~aL~~Lc~~~~~ 621 (710)
.-..++++|+.+|.+ ++++-.++..|..++... ...+.. ....+..+. ..+...+..|+.+|..++...
T Consensus 264 ~~~~~~~~L~~lL~s~~~nvr~~~L~~L~~l~~~~--~~~v~~----~~~~~~~l~~~~d~~Ir~~~l~lL~~l~~~~-- 335 (526)
T PF01602_consen 264 LLQKAINPLIKLLSSSDPNVRYIALDSLSQLAQSN--PPAVFN----QSLILFFLLYDDDPSIRKKALDLLYKLANES-- 335 (526)
T ss_dssp HHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHCCHC--HHHHGT----HHHHHHHHHCSSSHHHHHHHHHHHHHH--HH--
T ss_pred HHHhhHHHHHHHhhcccchhehhHHHHHHHhhccc--chhhhh----hhhhhheecCCCChhHHHHHHHHHhhccccc--
Confidence 456778889999854 456777888888888754 223321 233444555 678889999999999988654
Q ss_pred HHHHHHhCCchHHHHHHh-hcCCHHHHHHHHHHHHHhh
Q 036199 622 YCKLVMNEGVIPSLVKIS-VYGNDKAKVSALELRRLLR 658 (710)
Q Consensus 622 ~~~~v~~~G~v~~Lv~L~-~~gt~~~k~kA~~LL~~l~ 658 (710)
+... +++.|.... ..++...++.+...+..+.
T Consensus 336 n~~~-----Il~eL~~~l~~~~d~~~~~~~i~~I~~la 368 (526)
T PF01602_consen 336 NVKE-----ILDELLKYLSELSDPDFRRELIKAIGDLA 368 (526)
T ss_dssp HHHH-----HHHHHHHHHHHC--HHHHHHHHHHHHHHH
T ss_pred chhh-----HHHHHHHHHHhccchhhhhhHHHHHHHHH
Confidence 3333 355665555 3345666666666555444
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E. |
| >PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.019 Score=63.17 Aligned_cols=260 Identities=13% Similarity=0.113 Sum_probs=182.4
Q ss_pred CCCHHHHHHHHHHHHHHHccCcccchhcccCCcHHHHHHHhhccccCCCHHHHHHHHHHHHHHhccCCCCCccccccchH
Q 036199 392 ELNWDCQCKVIEDYETRLEHDNQVSHSLSSTNFVEPLIRFLRDARDLHDSRAQRIGCRLLLAFVSKNRSGIPYLNEDLFS 471 (710)
Q Consensus 392 s~~~e~q~~Al~~L~~Lak~~~~~r~~I~~~G~I~~LV~lL~s~~~~~d~~~q~~A~~~L~nL~~~~~~k~~i~~~gaI~ 471 (710)
+.+.+++..+...+|.+..+. ..-..+.+.+.--.++.-|..+ ..+...+++|...+..+..-... ..-+..|.+.
T Consensus 36 ~~~~~vraa~yRilRy~i~d~-~~l~~~~~l~id~~ii~SL~~~--~~~~~ER~QALkliR~~l~~~~~-~~~~~~~vvr 111 (371)
T PF14664_consen 36 SDSKEVRAAGYRILRYLISDE-ESLQILLKLHIDIFIIRSLDRD--NKNDVEREQALKLIRAFLEIKKG-PKEIPRGVVR 111 (371)
T ss_pred CCcHHHHHHHHHHHHHHHcCH-HHHHHHHHcCCchhhHhhhccc--CCChHHHHHHHHHHHHHHHhcCC-cccCCHHHHH
Confidence 344666777777777777554 4455566666666677777653 23456677899999888543221 1124679999
Q ss_pred HHHHHhccCcHH--HHHHHHHHHhccCchhhHHHhhhCcHHHHHHhhcCCCHHHHHHHHHHHHHhccCcccccccccccc
Q 036199 472 LLASFLHSAAAT--EETLAILVALSSYAYFISKIVASGALASILNMLDSPNGKFQELAIKILHNLSSDVDIQSHIAPSEF 549 (710)
Q Consensus 472 ~LV~lL~s~~~~--~~Aa~~L~~Ls~~~~nk~~I~~~GaI~~LV~LL~~~~~~~~~~A~~aL~nLs~~~en~~~iv~aG~ 549 (710)
.||.+..+.... ..|..+|..|+.. +-..+..+||+..|++.+-+|..+..+..+.++..+-.++..+..+...--
T Consensus 112 alvaiae~~~D~lr~~cletL~El~l~--~P~lv~~~gG~~~L~~~l~d~~~~~~~~l~~~lL~lLd~p~tR~yl~~~~d 189 (371)
T PF14664_consen 112 ALVAIAEHEDDRLRRICLETLCELALL--NPELVAECGGIRVLLRALIDGSFSISESLLDTLLYLLDSPRTRKYLRPGFD 189 (371)
T ss_pred HHHHHHhCCchHHHHHHHHHHHHHHhh--CHHHHHHcCCHHHHHHHHHhccHhHHHHHHHHHHHHhCCcchhhhhcCCcc
Confidence 999999887653 5899999998853 234666899999999999888878888999999999988988876655333
Q ss_pred hhchHHhhcCc-----------hHHHHHHHHHHHHhcCcchHHHHHhhc-CChHHHHHHhhcCCHHHHHHHHHHHHHHh-
Q 036199 550 LPKLVPFLKDA-----------TLAVSCLVILKNMCNTEHARVCVVETS-GCLPSVAELLEIGSEEDQEHAVAILLCLC- 616 (710)
Q Consensus 550 V~~Lv~lL~~~-----------~~~~~al~iL~nLa~~~e~r~~i~~~~-g~I~~Lv~lL~~~s~~~ke~A~~aL~~Lc- 616 (710)
+..++.-+.+. +....+..++..+-.+-.|-..+.... .++..||..|...+++.++..+.+|..+-
T Consensus 190 L~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GLl~l~~~~~~~lksLv~~L~~p~~~ir~~Ildll~dllr 269 (371)
T PF14664_consen 190 LESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGLLYLSMNDFRGLKSLVDSLRLPNPEIRKAILDLLFDLLR 269 (371)
T ss_pred HHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCceeeeecCCchHHHHHHHHHcCCCHHHHHHHHHHHHHHHC
Confidence 44444444221 233445555555556666766665533 58899999999999999998888887662
Q ss_pred --------------------cC-----------------------Ch----H----HHHHHHhCCchHHHHHHhhcC-CH
Q 036199 617 --------------------SQ-----------------------RD----Q----YCKLVMNEGVIPSLVKISVYG-ND 644 (710)
Q Consensus 617 --------------------~~-----------------------~~----~----~~~~v~~~G~v~~Lv~L~~~g-t~ 644 (710)
.. .. . -...++++|.++.|+++..+. ++
T Consensus 270 ik~p~w~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~~~~~~~~~l~~~y~aLll~ili~~gL~~~L~~li~~~~d~ 349 (371)
T PF14664_consen 270 IKPPSWTESFLAGRRLTTYGRFQDTWNLSSGFAEAKSILPHRSSKRPNLVNHYLALLLAILIEAGLLEALVELIESSEDS 349 (371)
T ss_pred CCCCCcccchhhcccccccccccchhhhcccccccccccCccccccccHHHHHHHHHHHHHHHcChHHHHHHHHhcCCCc
Confidence 00 00 0 023567899999999998887 77
Q ss_pred HHHHHHHHHHHHh
Q 036199 645 KAKVSALELRRLL 657 (710)
Q Consensus 645 ~~k~kA~~LL~~l 657 (710)
....||.-||..+
T Consensus 350 ~l~~KAtlLL~el 362 (371)
T PF14664_consen 350 SLSRKATLLLGEL 362 (371)
T ss_pred hHHHHHHHHHHHH
Confidence 8899999998844
|
|
| >KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.0071 Score=65.54 Aligned_cols=267 Identities=14% Similarity=0.081 Sum_probs=179.7
Q ss_pred cchhhcCCCHHHHHHHHHHHHHHHccCcccchhcccCCcHHHHHHHhhcccc-CCCHHHHHHHHHHHHHHhccCCCCCcc
Q 036199 386 DLSRLTELNWDCQCKVIEDYETRLEHDNQVSHSLSSTNFVEPLIRFLRDARD-LHDSRAQRIGCRLLLAFVSKNRSGIPY 464 (710)
Q Consensus 386 ~L~~L~s~~~e~q~~Al~~L~~Lak~~~~~r~~I~~~G~I~~LV~lL~s~~~-~~d~~~q~~A~~~L~nL~~~~~~k~~i 464 (710)
|+..|...++-.+..+...|..++..+... .+.+......++|+.... +.+++..-.++.+|..+...++.|-.+
T Consensus 119 fl~ll~r~d~~iv~~~~~Ils~la~~g~~~----~~~~e~~~~~~~l~~~l~~~~~~~~~~~~~rcLQ~ll~~~eyR~~~ 194 (442)
T KOG2759|consen 119 FLNLLNRQDTFIVEMSFRILSKLACFGNCK----MELSELDVYKGFLKEQLQSSTNNDYIQFAARCLQTLLRVDEYRYAF 194 (442)
T ss_pred HHHHHhcCChHHHHHHHHHHHHHHHhcccc----ccchHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHhcCcchhhee
Confidence 334455555555555666666666554432 122223333333322111 256677778888999888888888888
Q ss_pred ccccchHHHHHHhccCcH--H--HHHHHHHHHhccCchhhHHHhhhCcHHHHHHhhcCCC-HHHHHHHHHHHHHhccCc-
Q 036199 465 LNEDLFSLLASFLHSAAA--T--EETLAILVALSSYAYFISKIVASGALASILNMLDSPN-GKFQELAIKILHNLSSDV- 538 (710)
Q Consensus 465 ~~~gaI~~LV~lL~s~~~--~--~~Aa~~L~~Ls~~~~nk~~I~~~GaI~~LV~LL~~~~-~~~~~~A~~aL~nLs~~~- 538 (710)
+.++++..++..|.+... + -...-+++-|+-++.....+...+.|+.|++++++.. ..+.+-.+.++.||....
T Consensus 195 v~adg~~~l~~~l~s~~~~~QlQYqsifciWlLtFn~~~ae~~~~~~li~~L~~Ivk~~~KEKV~Rivlai~~Nll~k~~ 274 (442)
T KOG2759|consen 195 VIADGVSLLIRILASTKCGFQLQYQSIFCIWLLTFNPHAAEKLKRFDLIQDLSDIVKESTKEKVTRIVLAIFRNLLDKGP 274 (442)
T ss_pred eecCcchhhHHHHhccCcchhHHHHHHHHHHHhhcCHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc
Confidence 999999999999953221 2 3778888889988888888867899999999998765 456778889999998755
Q ss_pred ------ccccccccccchhchHHhh-----cCchHHH-------HHHHHHHHHhcCcchHHHHHh---------------
Q 036199 539 ------DIQSHIAPSEFLPKLVPFL-----KDATLAV-------SCLVILKNMCNTEHARVCVVE--------------- 585 (710)
Q Consensus 539 ------en~~~iv~aG~V~~Lv~lL-----~~~~~~~-------~al~iL~nLa~~~e~r~~i~~--------------- 585 (710)
+.+..|+..++. +-++.| +|+++.+ .--.-...|++-++...++..
T Consensus 275 ~~~~~k~~~~~mv~~~v~-k~l~~L~~rkysDEDL~~di~~L~e~L~~svq~LsSFDeY~sEl~sG~L~WSP~Hk~e~FW 353 (442)
T KOG2759|consen 275 DRETKKDIASQMVLCKVL-KTLQSLEERKYSDEDLVDDIEFLTEKLKNSVQDLSSFDEYKSELRSGRLEWSPVHKSEKFW 353 (442)
T ss_pred hhhHHHHHHHHHHhcCch-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHhCCcCCCccccccchH
Confidence 333455555544 444555 3444422 222223344444444443321
Q ss_pred ---------h-cCChHHHHHHhhcC-CHHHHHHHHHHHHHHhcCChHHHHHHHhCCchHHHHHHhhcCCHHHHHHHHHHH
Q 036199 586 ---------T-SGCLPSVAELLEIG-SEEDQEHAVAILLCLCSQRDQYCKLVMNEGVIPSLVKISVYGNDKAKVSALELR 654 (710)
Q Consensus 586 ---------~-~g~I~~Lv~lL~~~-s~~~ke~A~~aL~~Lc~~~~~~~~~v~~~G~v~~Lv~L~~~gt~~~k~kA~~LL 654 (710)
. -..+..|+++|++. +|..-..|+.=+-..-...|+-+..+.+-|+=..++.|+...++++|-.|...+
T Consensus 354 ~eNa~rlnennyellkiL~~lLe~s~Dp~iL~VAc~DIge~Vr~yP~gk~vv~k~ggKe~vM~Llnh~d~~Vry~ALlav 433 (442)
T KOG2759|consen 354 RENADRLNENNYELLKILIKLLETSNDPIILCVACHDIGEYVRHYPEGKAVVEKYGGKERVMNLLNHEDPEVRYHALLAV 433 (442)
T ss_pred HHhHHHHhhccHHHHHHHHHHHhcCCCCceeehhhhhHHHHHHhCchHhHHHHHhchHHHHHHHhcCCCchHHHHHHHHH
Confidence 0 01466888888875 577777777777777777888899999999999999999999999999999888
Q ss_pred HHh
Q 036199 655 RLL 657 (710)
Q Consensus 655 ~~l 657 (710)
+.|
T Consensus 434 Q~l 436 (442)
T KOG2759|consen 434 QKL 436 (442)
T ss_pred HHH
Confidence 754
|
|
| >KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.013 Score=69.21 Aligned_cols=240 Identities=15% Similarity=0.245 Sum_probs=162.1
Q ss_pred HHHHHHHHHHHHHccCcccchhccc----CCcHHHHHHHhhccccCCCHHHHHHHHHHHHHHhccCCCCCccccccchHH
Q 036199 397 CQCKVIEDYETRLEHDNQVSHSLSS----TNFVEPLIRFLRDARDLHDSRAQRIGCRLLLAFVSKNRSGIPYLNEDLFSL 472 (710)
Q Consensus 397 ~q~~Al~~L~~Lak~~~~~r~~I~~----~G~I~~LV~lL~s~~~~~d~~~q~~A~~~L~nL~~~~~~k~~i~~~gaI~~ 472 (710)
...-++.+|+++.+.+++--..+.+ -|..+.++.+|... .++++|.-|+.++..+..+...-..+++.|.+..
T Consensus 1741 ~v~m~LtAL~Nli~~nPdlasvfgSe~~lig~F~l~~~~lr~~---~~~~iq~LaL~Vi~~~Tan~~Cv~~~a~~~vL~~ 1817 (2235)
T KOG1789|consen 1741 KVLMTLTALANLVSANPDLASVFGSEILLIGNFPLLITYLRCR---KHPKLQILALQVILLATANKECVTDLATCNVLTT 1817 (2235)
T ss_pred HHHHHHHHHHHHHhhCcchhhhccchhhhhcccHHHHHHHHHc---CCchHHHHHHHHHHHHhcccHHHHHHHhhhHHHH
Confidence 3456788999999998876554443 37778888888763 6889999999988887555444445678899999
Q ss_pred HHHHhccCcH-HHHHHHHHHHhccCchhhHHHhhhCcHHHHHHhhcC-CCHHHHHHHHHHHHHhcc--------------
Q 036199 473 LASFLHSAAA-TEETLAILVALSSYAYFISKIVASGALASILNMLDS-PNGKFQELAIKILHNLSS-------------- 536 (710)
Q Consensus 473 LV~lL~s~~~-~~~Aa~~L~~Ls~~~~nk~~I~~~GaI~~LV~LL~~-~~~~~~~~A~~aL~nLs~-------------- 536 (710)
|+.+|.+..+ ++.++.+|+.|+.+.+......+.|++..+.+++.. ..++.+..|+..|..|..
T Consensus 1818 LL~lLHS~PS~R~~vL~vLYAL~S~~~i~keA~~hg~l~yil~~~c~~~~~QqRAqaAeLlaKl~Adkl~GPrV~ITL~k 1897 (2235)
T KOG1789|consen 1818 LLTLLHSQPSMRARVLDVLYALSSNGQIGKEALEHGGLMYILSILCLTNSDQQRAQAAELLAKLQADKLTGPRVTITLIK 1897 (2235)
T ss_pred HHHHHhcChHHHHHHHHHHHHHhcCcHHHHHHHhcCchhhhhHHHhccCcHHHHHHHHHHHHHhhhccccCCceeeehHH
Confidence 9999987654 578999999999988877777788888777776633 233333333333333311
Q ss_pred --------------------------------------------------------------------------------
Q 036199 537 -------------------------------------------------------------------------------- 536 (710)
Q Consensus 537 -------------------------------------------------------------------------------- 536 (710)
T Consensus 1898 FLP~~f~d~~RD~PEAaVH~fE~T~EnPELiWn~~~r~kvS~~i~tM~~~~y~~QQk~p~~~W~~PEqsAg~~Ea~~E~a 1977 (2235)
T KOG1789|consen 1898 FLPEIFADSLRDSPEAAVHMFESTSENPELIWNEVTRQKVSGIIDTMVGKLYEQQQKDPTVKWNTPEQSAGTSEADKECA 1977 (2235)
T ss_pred hchHHHHHHHhcCHHHHHHHHhccCCCcccccCHhHHHHHHHHHHHHHHHHHHHhccCCcccccCchhhcchhhhccCcc
Confidence
Q ss_pred ----------------------------------------------------------CcccccccccccchhchHHhhc
Q 036199 537 ----------------------------------------------------------DVDIQSHIAPSEFLPKLVPFLK 558 (710)
Q Consensus 537 ----------------------------------------------------------~~en~~~iv~aG~V~~Lv~lL~ 558 (710)
++.-..++-..|.+|.++..+.
T Consensus 1978 VGG~~~R~Fi~~P~f~LR~Pk~FL~~LLek~lelm~~~~peqh~l~lLt~A~V~L~r~hP~LADqip~LGylPK~~~Am~ 2057 (2235)
T KOG1789|consen 1978 VGGSINREFVVGPGFNLRHPKLFLTELLEKVLELMSRPTPEQHELDLLTKAFVELVRHHPNLADQLPSLGYLPKFCTAMC 2057 (2235)
T ss_pred cchhhhHHHhhCCCCcccCHHHHHHHHHHHHHHHhcCCCcccchhHHHHHHHHHHHHhCcchhhhCCCccchHHHHHHHH
Confidence 1111122222333333333331
Q ss_pred --CchHHHHHHHHHHHHhcCcchHHHHHhhcCChHHHHHHhhcCCHHHHHHHHHHHHHHhcCC-hHHHHHHHhCCchHHH
Q 036199 559 --DATLAVSCLVILKNMCNTEHARVCVVETSGCLPSVAELLEIGSEEDQEHAVAILLCLCSQR-DQYCKLVMNEGVIPSL 635 (710)
Q Consensus 559 --~~~~~~~al~iL~nLa~~~e~r~~i~~~~g~I~~Lv~lL~~~s~~~ke~A~~aL~~Lc~~~-~~~~~~v~~~G~v~~L 635 (710)
...+-..|+.+|..|+.+.-+..++.. -.++..++..+...-. .---|+.+|-.+-... .+....+++.|.+|.|
T Consensus 2058 ~~n~s~P~SaiRVlH~Lsen~~C~~AMA~-l~~i~~~m~~mkK~~~-~~GLA~EalkR~~~r~~~eLVAQ~LK~gLvpyL 2135 (2235)
T KOG1789|consen 2058 LQNTSAPRSAIRVLHELSENQFCCDAMAQ-LPCIDGIMKSMKKQPS-LMGLAAEALKRLMKRNTGELVAQMLKCGLVPYL 2135 (2235)
T ss_pred hcCCcCcHHHHHHHHHHhhccHHHHHHhc-cccchhhHHHHHhcch-HHHHHHHHHHHHHHHhHHHHHHHHhccCcHHHH
Confidence 112234688999999999999999988 5677778887765322 2237888887777655 4566778899999999
Q ss_pred HHHhhc
Q 036199 636 VKISVY 641 (710)
Q Consensus 636 v~L~~~ 641 (710)
+.|+..
T Consensus 2136 L~LLd~ 2141 (2235)
T KOG1789|consen 2136 LQLLDS 2141 (2235)
T ss_pred HHHhcc
Confidence 998643
|
|
| >KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.002 Score=70.00 Aligned_cols=235 Identities=17% Similarity=0.213 Sum_probs=155.0
Q ss_pred hcccCCcHHHHHHHhhccccCCCH--HHHHHHHHHHHHH-hccCCCCCccccccchHHHHHHhccCcH-HHHHHHHHHHh
Q 036199 418 SLSSTNFVEPLIRFLRDARDLHDS--RAQRIGCRLLLAF-VSKNRSGIPYLNEDLFSLLASFLHSAAA-TEETLAILVAL 493 (710)
Q Consensus 418 ~I~~~G~I~~LV~lL~s~~~~~d~--~~q~~A~~~L~nL-~~~~~~k~~i~~~gaI~~LV~lL~s~~~-~~~Aa~~L~~L 493 (710)
.|...|++..|++++.+ ++. .++..++.+|-.+ +..+..++.-+..|.|-.+.+ ++.+.. ....+.+|.++
T Consensus 175 ~iR~~~~lD~Llrmf~a----Pn~et~vRve~~rlLEq~~~aeN~d~va~~~~~~Il~lAK-~~e~~e~aR~~~~il~~m 249 (832)
T KOG3678|consen 175 AIRLDGGLDLLLRMFQA----PNLETSVRVEAARLLEQILVAENRDRVARIGLGVILNLAK-EREPVELARSVAGILEHM 249 (832)
T ss_pred HhhccchHHHHHHHHhC----CchhHHHHHHHHHHHHHHHhhhhhhHHhhccchhhhhhhh-hcCcHHHHHHHHHHHHHH
Confidence 45667999999999987 444 4477788888877 333333332223344433332 222222 25778888888
Q ss_pred c-cCchhhHHHhhhCcHHHHHHhhcCCCHHHHHHHHHHHHHhccC--cccccccccccchhchHHhhcC--chHHHHHHH
Q 036199 494 S-SYAYFISKIVASGALASILNMLDSPNGKFQELAIKILHNLSSD--VDIQSHIAPSEFLPKLVPFLKD--ATLAVSCLV 568 (710)
Q Consensus 494 s-~~~~nk~~I~~~GaI~~LV~LL~~~~~~~~~~A~~aL~nLs~~--~en~~~iv~aG~V~~Lv~lL~~--~~~~~~al~ 568 (710)
- ..++....+++.|++..++-..+..+|....+++-||.|++.+ .+.+.+|++..+-.-|..+-.+ .-+.-+|+-
T Consensus 250 FKHSeet~~~Lvaa~~lD~vl~~~rRt~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF~LA~skDel~R~~ACl 329 (832)
T KOG3678|consen 250 FKHSEETCQRLVAAGGLDAVLYWCRRTDPALLRHCALALGNCALHGGQAVQRRMVEKRAAEWLFPLAFSKDELLRLHACL 329 (832)
T ss_pred hhhhHHHHHHHHhhcccchheeecccCCHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhhhhhcchHHHHHHHHHH
Confidence 7 4567888999999999998888888899999999999999864 6778899988887777776533 334667777
Q ss_pred HHHHHhcCcchHHHHHhhcCC-------------------------------hHHHHHHhhcCCHHHHHHHHHHHHHHhc
Q 036199 569 ILKNMCNTEHARVCVVETSGC-------------------------------LPSVAELLEIGSEEDQEHAVAILLCLCS 617 (710)
Q Consensus 569 iL~nLa~~~e~r~~i~~~~g~-------------------------------I~~Lv~lL~~~s~~~ke~A~~aL~~Lc~ 617 (710)
+.+.|+.+.|--..+.. .|. +..||-+|.+.--+ ..++++. .+|.
T Consensus 330 AV~vlat~KE~E~~Vrk-S~TlaLVEPlva~~DP~~FARD~hd~aQG~~~d~LqRLvPlLdS~R~E--Aq~i~AF-~l~~ 405 (832)
T KOG3678|consen 330 AVAVLATNKEVEREVRK-SGTLALVEPLVASLDPGRFARDAHDYAQGRGPDDLQRLVPLLDSNRLE--AQCIGAF-YLCA 405 (832)
T ss_pred HHhhhhhhhhhhHHHhh-ccchhhhhhhhhccCcchhhhhhhhhhccCChHHHHHhhhhhhcchhh--hhhhHHH-HHHH
Confidence 77888876655444433 222 23334444322222 2233332 3343
Q ss_pred CC-----hHHHHHHHhCCchHHHHHHhhcCCHHHHHHHHHHHHHhhhcc
Q 036199 618 QR-----DQYCKLVMNEGVIPSLVKISVYGNDKAKVSALELRRLLRDVA 661 (710)
Q Consensus 618 ~~-----~~~~~~v~~~G~v~~Lv~L~~~gt~~~k~kA~~LL~~l~~~~ 661 (710)
.. ......+-+-|++..|-++..+.+.-+-.-|...|.++-+..
T Consensus 406 EAaIKs~Q~K~kVFseIGAIQaLKevaSS~d~vaakfAseALtviGEEV 454 (832)
T KOG3678|consen 406 EAAIKSLQGKTKVFSEIGAIQALKEVASSPDEVAAKFASEALTVIGEEV 454 (832)
T ss_pred HHHHHHhccchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHhcccc
Confidence 22 112355667799999999988777777788899999886543
|
|
| >PF14634 zf-RING_5: zinc-RING finger domain | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.00013 Score=54.67 Aligned_cols=41 Identities=17% Similarity=0.382 Sum_probs=35.3
Q ss_pred cccCCcccc---CCceecCCCCccchhhHHHHhhhCCCCCCCCCC
Q 036199 270 KCPLSLRLM---YDPVVIESGQTFERMWIQKWFEEGNHTCPKTKM 311 (710)
Q Consensus 270 ~CPI~~~~m---~DPV~~~~G~ty~r~~I~~w~~~g~~~cP~t~~ 311 (710)
.||||.+.+ ..|++++|||+||..||.++. .....||.|++
T Consensus 1 ~C~~C~~~~~~~~~~~l~~CgH~~C~~C~~~~~-~~~~~CP~C~k 44 (44)
T PF14634_consen 1 HCNICFEKYSEERRPRLTSCGHIFCEKCLKKLK-GKSVKCPICRK 44 (44)
T ss_pred CCcCcCccccCCCCeEEcccCCHHHHHHHHhhc-CCCCCCcCCCC
Confidence 389999988 468889999999999999998 45678999974
|
|
| >PF05536 Neurochondrin: Neurochondrin | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.0038 Score=72.12 Aligned_cols=231 Identities=17% Similarity=0.176 Sum_probs=149.5
Q ss_pred cHHHHHHHhhccccCCCHHHHHHHHHHH-HHHhccCC----CCCccccccchHHHHHHhccCcH------H---HHHHHH
Q 036199 424 FVEPLIRFLRDARDLHDSRAQRIGCRLL-LAFVSKNR----SGIPYLNEDLFSLLASFLHSAAA------T---EETLAI 489 (710)
Q Consensus 424 ~I~~LV~lL~s~~~~~d~~~q~~A~~~L-~nL~~~~~----~k~~i~~~gaI~~LV~lL~s~~~------~---~~Aa~~ 489 (710)
.++..+.+|++ .+ +.++-|..+| .++..+.. .+..+.++=+.+.|-++|+++.. . .-|+++
T Consensus 6 ~l~~c~~lL~~----~~-D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~Lavsv 80 (543)
T PF05536_consen 6 SLEKCLSLLKS----AD-DTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSV 80 (543)
T ss_pred HHHHHHHHhcc----CC-cHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHH
Confidence 35566777776 45 5555555444 45544322 23345566668999999987432 1 368889
Q ss_pred HHHhccCchhhHHHhhhCcHHHHHHhhcCCCH-HHHHHHHHHHHHhccCcccccccccccchhchHHhhcC-chHHHHHH
Q 036199 490 LVALSSYAYFISKIVASGALASILNMLDSPNG-KFQELAIKILHNLSSDVDIQSHIAPSEFLPKLVPFLKD-ATLAVSCL 567 (710)
Q Consensus 490 L~~Ls~~~~nk~~I~~~GaI~~LV~LL~~~~~-~~~~~A~~aL~nLs~~~en~~~iv~aG~V~~Lv~lL~~-~~~~~~al 567 (710)
|..++..++....=--.+.||.|++++.+++. +...+|..+|..++.+++++..+++.|+|+.|.+.+.+ +...+.|+
T Consensus 81 L~~f~~~~~~a~~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~~~G~~aLl~~g~v~~L~ei~~~~~~~~E~Al 160 (543)
T PF05536_consen 81 LAAFCRDPELASSPQMVSRIPLLLEILSSSSDLETVDDALQCLLAIASSPEGAKALLESGAVPALCEIIPNQSFQMEIAL 160 (543)
T ss_pred HHHHcCChhhhcCHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHcCcHhHHHHHhcCCHHHHHHHHHhCcchHHHHH
Confidence 99999877655433335689999999987776 99999999999999999999999999999999999965 45689999
Q ss_pred HHHHHHhcCcchHHHHHhhcC----ChHHHHHHhhcCCHHHHHHHHHHHHHHhcCChHH-HHHHHhCC----chHHHHHH
Q 036199 568 VILKNMCNTEHARVCVVETSG----CLPSVAELLEIGSEEDQEHAVAILLCLCSQRDQY-CKLVMNEG----VIPSLVKI 638 (710)
Q Consensus 568 ~iL~nLa~~~e~r~~i~~~~g----~I~~Lv~lL~~~s~~~ke~A~~aL~~Lc~~~~~~-~~~v~~~G----~v~~Lv~L 638 (710)
.+|.+++..... ..+-++.. .++.|-..+.......+-.++..|..+-...+.. ........ +..-|..+
T Consensus 161 ~lL~~Lls~~~~-~~~~~~~~~l~~il~~La~~fs~~~~~~kfell~~L~~~L~~~~~~~~~~~~~~~W~~~l~~gl~~i 239 (543)
T PF05536_consen 161 NLLLNLLSRLGQ-KSWAEDSQLLHSILPSLARDFSSFHGEDKFELLEFLSAFLPRSPILPLESPPSPKWLSDLRKGLRDI 239 (543)
T ss_pred HHHHHHHHhcch-hhhhhhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhcCcCCccccccCChhhhHHHHHHHHHHH
Confidence 999999874332 12212122 2334444444444455556666766665444211 11122222 23445555
Q ss_pred hhcC-CHHHHHHHHHHHHHhhhc
Q 036199 639 SVYG-NDKAKVSALELRRLLRDV 660 (710)
Q Consensus 639 ~~~g-t~~~k~kA~~LL~~l~~~ 660 (710)
+++. ++..|..|..|...|-+.
T Consensus 240 L~sr~~~~~R~~al~Laa~Ll~~ 262 (543)
T PF05536_consen 240 LQSRLTPSQRDPALNLAASLLDL 262 (543)
T ss_pred HhcCCCHHHHHHHHHHHHHHHHH
Confidence 5554 666777777776655555
|
|
| >KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.00014 Score=79.55 Aligned_cols=74 Identities=26% Similarity=0.430 Sum_probs=62.5
Q ss_pred ccCCCCCcccccCCccccCCceecCCCCccchhhHHHHhhhCCCCCCCCCCccCCC-----CCcccHHHHHHHHHHHHHc
Q 036199 261 SRAIIPEVFKCPLSLRLMYDPVVIESGQTFERMWIQKWFEEGNHTCPKTKMKLVCQ-----SLTPNTAMKDLISKWCMNL 335 (710)
Q Consensus 261 ~~~~~p~~f~CPI~~~~m~DPV~~~~G~ty~r~~I~~w~~~g~~~cP~t~~~l~~~-----~l~pN~~l~~~i~~w~~~~ 335 (710)
....++.+|.|-||..++.+||+++|||+||..||.+.++ ....||.|+.++... ...+|+.+..+|..++...
T Consensus 77 ~~~~~~sef~c~vc~~~l~~pv~tpcghs~c~~Cl~r~ld-~~~~cp~Cr~~l~e~~~~~~~~~~~r~~~~li~~F~~~~ 155 (398)
T KOG4159|consen 77 GPEEIRSEFECCVCSRALYPPVVTPCGHSFCLECLDRSLD-QETECPLCRDELVELPALEQALSLNRLLCKLITKFLEGS 155 (398)
T ss_pred cCccccchhhhhhhHhhcCCCccccccccccHHHHHHHhc-cCCCCcccccccccchHHHHHHHHHHHHHHHHHHhhhhh
Confidence 3456689999999999999999999999999999999877 466799999888742 2456888899999988764
|
|
| >KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.0053 Score=70.76 Aligned_cols=190 Identities=17% Similarity=0.205 Sum_probs=146.3
Q ss_pred ccchHHHHHHhccCc---HHHHHHHHHHHhccCchhhHHHhhhCcHHHHHHhhcCC--CHHHHHHHHHHHHHhccCcc--
Q 036199 467 EDLFSLLASFLHSAA---ATEETLAILVALSSYAYFISKIVASGALASILNMLDSP--NGKFQELAIKILHNLSSDVD-- 539 (710)
Q Consensus 467 ~gaI~~LV~lL~s~~---~~~~Aa~~L~~Ls~~~~nk~~I~~~GaI~~LV~LL~~~--~~~~~~~A~~aL~nLs~~~e-- 539 (710)
+.-|+.|++=+.+.. .++.|+..|..+| ..+|..++..| +++|+..|..+ |++..+.++.+++++.++++
T Consensus 21 aETI~kLcDRvessTL~eDRR~A~rgLKa~s--rkYR~~Vga~G-mk~li~vL~~D~~D~E~ik~~LdTl~il~~~dd~~ 97 (970)
T KOG0946|consen 21 AETIEKLCDRVESSTLLEDRRDAVRGLKAFS--RKYREEVGAQG-MKPLIQVLQRDYMDPEIIKYALDTLLILTSHDDSP 97 (970)
T ss_pred HhHHHHHHHHHhhccchhhHHHHHHHHHHHH--HHHHHHHHHcc-cHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCcch
Confidence 345777777665544 2468999998887 46787777665 89999999544 79999999999999998764
Q ss_pred ----ccc------------ccccccchhchHHhhcCc--hHHHHHHHHHHHHhc--CcchHHHHHhhcCChHHHHHHhhc
Q 036199 540 ----IQS------------HIAPSEFLPKLVPFLKDA--TLAVSCLVILKNMCN--TEHARVCVVETSGCLPSVAELLEI 599 (710)
Q Consensus 540 ----n~~------------~iv~aG~V~~Lv~lL~~~--~~~~~al~iL~nLa~--~~e~r~~i~~~~g~I~~Lv~lL~~ 599 (710)
+-. .+-..+-|..|+..+..- .++..++..|.+|-+ ..+-+.++..++-||..|+.+|..
T Consensus 98 ~v~dds~qsdd~g~~iae~fik~qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL~D 177 (970)
T KOG0946|consen 98 EVMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLLRD 177 (970)
T ss_pred hhcccchhhhHHHHHHHHHHHcCchhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHHhh
Confidence 322 133467888888888543 568899999998865 578888998889999999999998
Q ss_pred CCHHHHHHHHHHHHHHhcCChHHHHHHHhCCchHHHHHHhhc-CCHH---HHHHHHHHHHHhhh
Q 036199 600 GSEEDQEHAVAILLCLCSQRDQYCKLVMNEGVIPSLVKISVY-GNDK---AKVSALELRRLLRD 659 (710)
Q Consensus 600 ~s~~~ke~A~~aL~~Lc~~~~~~~~~v~~~G~v~~Lv~L~~~-gt~~---~k~kA~~LL~~l~~ 659 (710)
.-.-+|-.|+-.|..|...++..++.+.=+.++..|+++..+ |..+ +-+-|..+|..|-+
T Consensus 178 srE~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK 241 (970)
T KOG0946|consen 178 SREPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLK 241 (970)
T ss_pred hhhhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHh
Confidence 777788899999999999998888888888999999998654 3222 35667776664433
|
|
| >KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.00015 Score=79.76 Aligned_cols=71 Identities=20% Similarity=0.345 Sum_probs=58.2
Q ss_pred CCcccccCCccccCCceecCCCCccchhhHHHHhhh----CCCCCCCCCCccCCCCCcc----cHHHHHHHHHHHHHcC
Q 036199 266 PEVFKCPLSLRLMYDPVVIESGQTFERMWIQKWFEE----GNHTCPKTKMKLVCQSLTP----NTAMKDLISKWCMNLC 336 (710)
Q Consensus 266 p~~f~CPI~~~~m~DPV~~~~G~ty~r~~I~~w~~~----g~~~cP~t~~~l~~~~l~p----N~~l~~~i~~w~~~~~ 336 (710)
+.+..||||++--.=|+.+.|||.||-.||-++|.. +...||.|+..+...+|.| +..-+..++..+..||
T Consensus 184 ~t~~~CPICL~~~~~p~~t~CGHiFC~~CiLqy~~~s~~~~~~~CPiC~s~I~~kdl~pv~~e~~qkke~l~~~~~~ng 262 (513)
T KOG2164|consen 184 STDMQCPICLEPPSVPVRTNCGHIFCGPCILQYWNYSAIKGPCSCPICRSTITLKDLLPVFIEDDQKKEELKLHQDPNG 262 (513)
T ss_pred CcCCcCCcccCCCCcccccccCceeeHHHHHHHHhhhcccCCccCCchhhhccccceeeeeeccccccHHHHHHhcccC
Confidence 348999999999999999999999999999998764 5677999999888766554 3445556777777787
|
|
| >KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown] | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.00021 Score=74.71 Aligned_cols=66 Identities=23% Similarity=0.439 Sum_probs=54.9
Q ss_pred CCCcccccCCccccCCceec-CCCCccchhhHHHHhhhCCCCCCCCCCccCCC----CCcccHHHHHHHHHH
Q 036199 265 IPEVFKCPLSLRLMYDPVVI-ESGQTFERMWIQKWFEEGNHTCPKTKMKLVCQ----SLTPNTAMKDLISKW 331 (710)
Q Consensus 265 ~p~~f~CPI~~~~m~DPV~~-~~G~ty~r~~I~~w~~~g~~~cP~t~~~l~~~----~l~pN~~l~~~i~~w 331 (710)
+-.+..|++|.-+|.|+-+| .|=|||||+||-++|.. ..+||.|+-.+..+ .+.++++|+.++...
T Consensus 12 ~n~~itC~LC~GYliDATTI~eCLHTFCkSCivk~l~~-~~~CP~C~i~ih~t~pl~ni~~DrtlqdiVyKL 82 (331)
T KOG2660|consen 12 LNPHITCRLCGGYLIDATTITECLHTFCKSCIVKYLEE-SKYCPTCDIVIHKTHPLLNIRSDRTLQDIVYKL 82 (331)
T ss_pred cccceehhhccceeecchhHHHHHHHHHHHHHHHHHHH-hccCCccceeccCccccccCCcchHHHHHHHHH
Confidence 34578899999999999886 89999999999999987 78999998766544 367778888877553
|
|
| >PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.00042 Score=57.89 Aligned_cols=39 Identities=31% Similarity=0.680 Sum_probs=31.7
Q ss_pred ccCCccccCCc-------------eecCCCCccchhhHHHHhhhCCCCCCCCC
Q 036199 271 CPLSLRLMYDP-------------VVIESGQTFERMWIQKWFEEGNHTCPKTK 310 (710)
Q Consensus 271 CPI~~~~m~DP-------------V~~~~G~ty~r~~I~~w~~~g~~~cP~t~ 310 (710)
|+||++-|.|| +...|||.|-..||++|+.. +.+||.|+
T Consensus 22 C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~FH~~Ci~~Wl~~-~~~CP~CR 73 (73)
T PF12678_consen 22 CAICREPLEDPCPECQAPQDECPIVWGPCGHIFHFHCISQWLKQ-NNTCPLCR 73 (73)
T ss_dssp ETTTTSBTTSTTCCHHHCTTTS-EEEETTSEEEEHHHHHHHHTT-SSB-TTSS
T ss_pred ccccChhhhChhhhhcCCccccceEecccCCCEEHHHHHHHHhc-CCcCCCCC
Confidence 99999999554 34489999999999999985 44999985
|
Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D .... |
| >COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.00023 Score=72.18 Aligned_cols=50 Identities=22% Similarity=0.350 Sum_probs=44.8
Q ss_pred CcccccCCccccCCceecCCCCccchhhHHH-HhhhCCCCCCCCCCccCCC
Q 036199 267 EVFKCPLSLRLMYDPVVIESGQTFERMWIQK-WFEEGNHTCPKTKMKLVCQ 316 (710)
Q Consensus 267 ~~f~CPI~~~~m~DPV~~~~G~ty~r~~I~~-w~~~g~~~cP~t~~~l~~~ 316 (710)
.+|.|+||++.|.+|+-++|||-||-.||-. |-.+....||.|++...+.
T Consensus 214 ~d~kC~lC~e~~~~ps~t~CgHlFC~~Cl~~~~t~~k~~~CplCRak~~pk 264 (271)
T COG5574 214 ADYKCFLCLEEPEVPSCTPCGHLFCLSCLLISWTKKKYEFCPLCRAKVYPK 264 (271)
T ss_pred cccceeeeecccCCcccccccchhhHHHHHHHHHhhccccCchhhhhccch
Confidence 6899999999999999999999999999999 8777677799998876554
|
|
| >COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.00062 Score=69.52 Aligned_cols=66 Identities=27% Similarity=0.436 Sum_probs=56.7
Q ss_pred ccccCCccccCCceec-CCCCccchhhHHHHhhhCCCCCCCCCCc-cCCCCCcccHHHHHHHHHHHHH
Q 036199 269 FKCPLSLRLMYDPVVI-ESGQTFERMWIQKWFEEGNHTCPKTKMK-LVCQSLTPNTAMKDLISKWCMN 334 (710)
Q Consensus 269 f~CPI~~~~m~DPV~~-~~G~ty~r~~I~~w~~~g~~~cP~t~~~-l~~~~l~pN~~l~~~i~~w~~~ 334 (710)
+.||+|.-|++.|+-+ +|||+||.+||+..+-.....||.|... +--..|+|++..+.-|+.+...
T Consensus 275 LkCplc~~Llrnp~kT~cC~~~fc~eci~~al~dsDf~CpnC~rkdvlld~l~pD~dk~~EvE~~lkk 342 (427)
T COG5222 275 LKCPLCHCLLRNPMKTPCCGHTFCDECIGTALLDSDFKCPNCSRKDVLLDGLTPDIDKKLEVEKALKK 342 (427)
T ss_pred ccCcchhhhhhCcccCccccchHHHHHHhhhhhhccccCCCcccccchhhccCccHHHHHHHHHHHHH
Confidence 9999999999999988 8999999999999887777889999653 2334689999999999888663
|
|
| >smart00185 ARM Armadillo/beta-catenin-like repeats | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.0011 Score=48.06 Aligned_cols=40 Identities=28% Similarity=0.329 Sum_probs=36.7
Q ss_pred chhhHHHhhhCcHHHHHHhhcCCCHHHHHHHHHHHHHhcc
Q 036199 497 AYFISKIVASGALASILNMLDSPNGKFQELAIKILHNLSS 536 (710)
Q Consensus 497 ~~nk~~I~~~GaI~~LV~LL~~~~~~~~~~A~~aL~nLs~ 536 (710)
++++..+.+.|+|++|+.+|.+++++.++.|+++|.||+.
T Consensus 2 ~~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~~ 41 (41)
T smart00185 2 DEQKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLSS 41 (41)
T ss_pred cHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHcC
Confidence 4578889999999999999999999999999999999973
|
Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin. |
| >KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.0086 Score=68.00 Aligned_cols=161 Identities=12% Similarity=0.131 Sum_probs=117.8
Q ss_pred hhHHHhhhCcHHHHHHhhcCCCHHHHHHHHHHHHHhccCc-ccccccccccchhchHHhhcCch--HHHHHHHHHHHHhc
Q 036199 499 FISKIVASGALASILNMLDSPNGKFQELAIKILHNLSSDV-DIQSHIAPSEFLPKLVPFLKDAT--LAVSCLVILKNMCN 575 (710)
Q Consensus 499 nk~~I~~~GaI~~LV~LL~~~~~~~~~~A~~aL~nLs~~~-en~~~iv~aG~V~~Lv~lL~~~~--~~~~al~iL~nLa~ 575 (710)
+|..+-+.-....+..+....|......|+-.+.+++..- .-+...-...++.+||+++.+|+ +...++++|.||..
T Consensus 369 ~~k~~l~~~t~~~l~~~~~~kd~~~~aaa~l~~~s~srsV~aL~tg~~~~dv~~plvqll~dp~~~i~~~~lgai~NlVm 448 (678)
T KOG1293|consen 369 LKKEILETTTESHLMCLPPIKDHDFVAAALLCLKSFSRSVSALRTGLKRNDVAQPLVQLLMDPEIMIMGITLGAICNLVM 448 (678)
T ss_pred HHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHcCCccchhHHHHHHHhhCcchhHHHHHHHHHHHHHh
Confidence 3444443333444444445556666667777776666432 22223566789999999997764 57788999999987
Q ss_pred -CcchHHHHHhhcCChHHHHHHhhcCCHHHHHHHHHHHHHHhcCChHHHHHHHhCCc-hHHHHHHhhcCCHHHHHHHHHH
Q 036199 576 -TEHARVCVVETSGCLPSVAELLEIGSEEDQEHAVAILLCLCSQRDQYCKLVMNEGV-IPSLVKISVYGNDKAKVSALEL 653 (710)
Q Consensus 576 -~~e~r~~i~~~~g~I~~Lv~lL~~~s~~~ke~A~~aL~~Lc~~~~~~~~~v~~~G~-v~~Lv~L~~~gt~~~k~kA~~L 653 (710)
-..-|..+.+ .|||..|.+++.+.++..+.+++|+|.++.-+..+..+...-..+ ...++.+..+....+++.+-.|
T Consensus 449 efs~~kskfl~-~ngId~l~s~~~~~~~n~r~~~~~~Lr~l~f~~de~~k~~~~~ki~a~~i~~l~nd~d~~Vqeq~fql 527 (678)
T KOG1293|consen 449 EFSNLKSKFLR-NNGIDILESMLTDPDFNSRANSLWVLRHLMFNCDEEEKFQLLAKIPANLILDLINDPDWAVQEQCFQL 527 (678)
T ss_pred hcccHHHHHHH-cCcHHHHHHHhcCCCchHHHHHHHHHHHHHhcchHHHHHHHHHHhhHHHHHHHHhCCCHHHHHHHHHH
Confidence 5667888888 799999999999999999999999999999888654444333333 3566778889999999999999
Q ss_pred HHHhhhc
Q 036199 654 RRLLRDV 660 (710)
Q Consensus 654 L~~l~~~ 660 (710)
||.|--.
T Consensus 528 lRNl~c~ 534 (678)
T KOG1293|consen 528 LRNLTCN 534 (678)
T ss_pred HHHhhcC
Confidence 9987644
|
|
| >KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.007 Score=68.69 Aligned_cols=121 Identities=12% Similarity=0.129 Sum_probs=97.8
Q ss_pred HhhhCcHHHHHHhhcCCCHHHHHHHHHHHHHhcc-CcccccccccccchhchHHhhcC--chHHHHHHHHHHHHhcCcch
Q 036199 503 IVASGALASILNMLDSPNGKFQELAIKILHNLSS-DVDIQSHIAPSEFLPKLVPFLKD--ATLAVSCLVILKNMCNTEHA 579 (710)
Q Consensus 503 I~~~GaI~~LV~LL~~~~~~~~~~A~~aL~nLs~-~~en~~~iv~aG~V~~Lv~lL~~--~~~~~~al~iL~nLa~~~e~ 579 (710)
.....++.+||.+|..++..++..++++|+||.. ..+-+..+++.|+|+.|..++.+ .+....++++|+++.-+.+.
T Consensus 415 ~~~~dv~~plvqll~dp~~~i~~~~lgai~NlVmefs~~kskfl~~ngId~l~s~~~~~~~n~r~~~~~~Lr~l~f~~de 494 (678)
T KOG1293|consen 415 LKRNDVAQPLVQLLMDPEIMIMGITLGAICNLVMEFSNLKSKFLRNNGIDILESMLTDPDFNSRANSLWVLRHLMFNCDE 494 (678)
T ss_pred CccchhHHHHHHHhhCcchhHHHHHHHHHHHHHhhcccHHHHHHHcCcHHHHHHHhcCCCchHHHHHHHHHHHHHhcchH
Confidence 3346789999999999999999999999999986 67778899999999999999965 46788999999999985443
Q ss_pred H--HHHHhhcCChHHHHHHhhcCCHHHHHHHHHHHHHHhcCChHHHH
Q 036199 580 R--VCVVETSGCLPSVAELLEIGSEEDQEHAVAILLCLCSQRDQYCK 624 (710)
Q Consensus 580 r--~~i~~~~g~I~~Lv~lL~~~s~~~ke~A~~aL~~Lc~~~~~~~~ 624 (710)
. .+... .=+-..++.+....+..+||.+...|.||.++..+...
T Consensus 495 ~~k~~~~~-ki~a~~i~~l~nd~d~~Vqeq~fqllRNl~c~~~~svd 540 (678)
T KOG1293|consen 495 EEKFQLLA-KIPANLILDLINDPDWAVQEQCFQLLRNLTCNSRKSVD 540 (678)
T ss_pred HHHHHHHH-HhhHHHHHHHHhCCCHHHHHHHHHHHHHhhcCcHHHHH
Confidence 3 22232 22345677788889999999999999999998644333
|
|
| >KOG0289 consensus mRNA splicing factor [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.76 E-value=0.00065 Score=73.03 Aligned_cols=51 Identities=29% Similarity=0.453 Sum_probs=46.4
Q ss_pred ccccCCccccCCceec-CCCCccchhhHHHHhhhCCCCCCCCCCccCCCCCcc
Q 036199 269 FKCPLSLRLMYDPVVI-ESGQTFERMWIQKWFEEGNHTCPKTKMKLVCQSLTP 320 (710)
Q Consensus 269 f~CPI~~~~m~DPV~~-~~G~ty~r~~I~~w~~~g~~~cP~t~~~l~~~~l~p 320 (710)
|.|.|++++-++||+- .+||.|||.-|++++.+ +.+||+|+++|+..+|+|
T Consensus 1 m~CaISgEvP~~PVvS~~Sg~vfEkrLIEqyI~e-~G~DPIt~~pLs~eelV~ 52 (506)
T KOG0289|consen 1 MVCAISGEVPEEPVVSPVSGHVFEKRLIEQYIAE-TGKDPITNEPLSIEELVE 52 (506)
T ss_pred CeecccCCCCCCccccccccchHHHHHHHHHHHH-cCCCCCCCCcCCHHHeee
Confidence 5799999999999986 78999999999999985 667999999999888777
|
|
| >KOG2734 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.066 Score=58.48 Aligned_cols=231 Identities=16% Similarity=0.189 Sum_probs=159.7
Q ss_pred HHHHHHHHHccCcccchhcccCCcHHHHHHHhhccccCCCHHHHHHHHHHHHHHhccC-----CCC-----Cccccccch
Q 036199 401 VIEDYETRLEHDNQVSHSLSSTNFVEPLIRFLRDARDLHDSRAQRIGCRLLLAFVSKN-----RSG-----IPYLNEDLF 470 (710)
Q Consensus 401 Al~~L~~Lak~~~~~r~~I~~~G~I~~LV~lL~s~~~~~d~~~q~~A~~~L~nL~~~~-----~~k-----~~i~~~gaI 470 (710)
.+.++..++. -++--..+++.++++.|+.+|.+ .+.++-...+.+|..+...+ ... ...++.+++
T Consensus 104 ~IQ~mhvlAt-~PdLYp~lveln~V~slL~LLgH----eNtDI~iavvdLLqELTD~Dv~~es~egAevLidaLvdg~vl 178 (536)
T KOG2734|consen 104 IIQEMHVLAT-MPDLYPILVELNAVQSLLELLGH----ENTDIAIAVVDLLQELTDEDVLYESEEGAEVLIDALVDGQVL 178 (536)
T ss_pred HHHHHHhhhc-ChHHHHHHHHhccHHHHHHHhcC----CCchhHHHHHHHHHHhhhhcccccccccHHHHHHHHHhccHH
Confidence 3444444442 34444567888999999999988 66777777777777774322 111 122466778
Q ss_pred HHHHHHhcc--CcHH------HHHHHHHHHhc-cCchhhHHHhhhCcHHHHHHhhcCC--CHHHHHHHHHHHHHhccC-c
Q 036199 471 SLLASFLHS--AAAT------EETLAILVALS-SYAYFISKIVASGALASILNMLDSP--NGKFQELAIKILHNLSSD-V 538 (710)
Q Consensus 471 ~~LV~lL~s--~~~~------~~Aa~~L~~Ls-~~~~nk~~I~~~GaI~~LV~LL~~~--~~~~~~~A~~aL~nLs~~-~ 538 (710)
+.||+-+.. ++.+ .++.+++.|+. ..++....+++.|.+..|+.-+... -..-+..|..+|.-+-.+ .
T Consensus 179 aLLvqnveRLdEsvkeea~gv~~~L~vveNlv~~r~~~~~~~~e~~ll~WLL~rl~~k~~f~aNk~YasEiLaillq~s~ 258 (536)
T KOG2734|consen 179 ALLVQNVERLDESVKEEADGVHNTLAVVENLVEVRPAICTEIVEQGLLSWLLKRLKGKAAFDANKQYASEILAILLQNSD 258 (536)
T ss_pred HHHHHHHHHhhhcchhhhhhhHHHHHHHHHHHhccHHHHHHHHHhhHHHHHHHHHhcccCcchhHHHHHHHHHHHhccCc
Confidence 888876652 2221 36788888887 4567788888889999888855332 234567777788777664 5
Q ss_pred ccccccccccchhchHHhh-----cCc------hHHHHHHHHHHHHhcCcchHHHHHhhcCChHHHHHHhhcCCHHHHHH
Q 036199 539 DIQSHIAPSEFLPKLVPFL-----KDA------TLAVSCLVILKNMCNTEHARVCVVETSGCLPSVAELLEIGSEEDQEH 607 (710)
Q Consensus 539 en~~~iv~aG~V~~Lv~lL-----~~~------~~~~~al~iL~nLa~~~e~r~~i~~~~g~I~~Lv~lL~~~s~~~ke~ 607 (710)
+|+...-...+|..|++-+ .+| ++.+.-...|..+-..+++|..+.. ..|++...-+++. ....+..
T Consensus 259 e~~~~~~~l~GiD~lL~~la~yk~~dP~~~~E~EmmeNLFdcLCs~lm~~~nr~~Fl~-~EGlqLm~Lmlr~-Kk~sr~S 336 (536)
T KOG2734|consen 259 ENRKLLGPLDGIDVLLRQLAVYKRHDPATVDEEEMMENLFDCLCSLLMAPANRERFLK-GEGLQLMNLMLRE-KKVSRGS 336 (536)
T ss_pred hhhhhhcCcccHHHHHhhcchhhccCCCCcCHHHHHHHHHHHHHHHhcChhhhhhhhc-cccHHHHHHHHHH-HHHhhhh
Confidence 5888888999999999988 232 3455666666666678999999998 5677766666654 5566778
Q ss_pred HHHHHHHHhcCCh--HHHHHHHhCCchHHHHHH
Q 036199 608 AVAILLCLCSQRD--QYCKLVMNEGVIPSLVKI 638 (710)
Q Consensus 608 A~~aL~~Lc~~~~--~~~~~v~~~G~v~~Lv~L 638 (710)
|+.+|-....+.+ .+|...++.++...++-+
T Consensus 337 alkvLd~am~g~~gt~~C~kfVe~lGLrtiF~~ 369 (536)
T KOG2734|consen 337 ALKVLDHAMFGPEGTPNCNKFVEILGLRTIFPL 369 (536)
T ss_pred HHHHHHHHHhCCCchHHHHHHHHHHhHHHHHHH
Confidence 9999987777775 688888888877666554
|
|
| >KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=96.70 E-value=0.015 Score=63.54 Aligned_cols=223 Identities=10% Similarity=0.107 Sum_probs=154.1
Q ss_pred hhhcCCCHHH--HHHHHHHHHHHHccCcccchhcccCCcHHHHHHHhhccccCCCHHHHHHHHHHHHHHhccC-CCCCcc
Q 036199 388 SRLTELNWDC--QCKVIEDYETRLEHDNQVSHSLSSTNFVEPLIRFLRDARDLHDSRAQRIGCRLLLAFVSKN-RSGIPY 464 (710)
Q Consensus 388 ~~L~s~~~e~--q~~Al~~L~~Lak~~~~~r~~I~~~G~I~~LV~lL~s~~~~~d~~~q~~A~~~L~nL~~~~-~~k~~i 464 (710)
..+...+.+. +.++...|.... ..+|+..++..| +..++.+-+. ...++.++..+.+|.++..+. .....+
T Consensus 187 rmf~aPn~et~vRve~~rlLEq~~--~aeN~d~va~~~-~~~Il~lAK~---~e~~e~aR~~~~il~~mFKHSeet~~~L 260 (832)
T KOG3678|consen 187 RMFQAPNLETSVRVEAARLLEQIL--VAENRDRVARIG-LGVILNLAKE---REPVELARSVAGILEHMFKHSEETCQRL 260 (832)
T ss_pred HHHhCCchhHHHHHHHHHHHHHHH--hhhhhhHHhhcc-chhhhhhhhh---cCcHHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 4445555444 455655554443 256788777766 4444444432 256888999999999997654 444556
Q ss_pred ccccchHHHHHHhccCcHH--HHHHHHHHHhcc--CchhhHHHhhhCcHHHHHHhhcCCCHHHHHHHHHHHHHhccCccc
Q 036199 465 LNEDLFSLLASFLHSAAAT--EETLAILVALSS--YAYFISKIVASGALASILNMLDSPNGKFQELAIKILHNLSSDVDI 540 (710)
Q Consensus 465 ~~~gaI~~LV~lL~s~~~~--~~Aa~~L~~Ls~--~~~nk~~I~~~GaI~~LV~LL~~~~~~~~~~A~~aL~nLs~~~en 540 (710)
+..|++..++-..+..... .+++-+|.|++. ....+..|++..+-..|.-+-.+.|.-.+-+|+-|.+-|+.+.+.
T Consensus 261 vaa~~lD~vl~~~rRt~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF~LA~skDel~R~~AClAV~vlat~KE~ 340 (832)
T KOG3678|consen 261 VAAGGLDAVLYWCRRTDPALLRHCALALGNCALHGGQAVQRRMVEKRAAEWLFPLAFSKDELLRLHACLAVAVLATNKEV 340 (832)
T ss_pred HhhcccchheeecccCCHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhhhhhcchHHHHHHHHHHHHhhhhhhhhh
Confidence 7899999998888766553 689999998884 456788888888888888888888888899999999999988777
Q ss_pred cccccccc---chhchHHhh----------------------------cCchHHHHHHHHHHHHhc----CcchHHHHHh
Q 036199 541 QSHIAPSE---FLPKLVPFL----------------------------KDATLAVSCLVILKNMCN----TEHARVCVVE 585 (710)
Q Consensus 541 ~~~iv~aG---~V~~Lv~lL----------------------------~~~~~~~~al~iL~nLa~----~~e~r~~i~~ 585 (710)
-..+-+.| .|.+|+..+ .+......|+++....+. ...|+..+..
T Consensus 341 E~~VrkS~TlaLVEPlva~~DP~~FARD~hd~aQG~~~d~LqRLvPlLdS~R~EAq~i~AF~l~~EAaIKs~Q~K~kVFs 420 (832)
T KOG3678|consen 341 EREVRKSGTLALVEPLVASLDPGRFARDAHDYAQGRGPDDLQRLVPLLDSNRLEAQCIGAFYLCAEAAIKSLQGKTKVFS 420 (832)
T ss_pred hHHHhhccchhhhhhhhhccCcchhhhhhhhhhccCChHHHHHhhhhhhcchhhhhhhHHHHHHHHHHHHHhccchhHHH
Confidence 66666555 345555544 222223345665554443 4567777777
Q ss_pred hcCChHHHHHHhhcCCHHHHHHHHHHHHHHh
Q 036199 586 TSGCLPSVAELLEIGSEEDQEHAVAILLCLC 616 (710)
Q Consensus 586 ~~g~I~~Lv~lL~~~s~~~ke~A~~aL~~Lc 616 (710)
.-|+|+.|-++..+.+.....-|-.+|.-+.
T Consensus 421 eIGAIQaLKevaSS~d~vaakfAseALtviG 451 (832)
T KOG3678|consen 421 EIGAIQALKEVASSPDEVAAKFASEALTVIG 451 (832)
T ss_pred HHHHHHHHHHHhcCchHHHHHHHHHHHHHhc
Confidence 6799999999888777666666777775553
|
|
| >PF11841 DUF3361: Domain of unknown function (DUF3361) | Back alignment and domain information |
|---|
Probab=96.61 E-value=0.038 Score=53.03 Aligned_cols=120 Identities=19% Similarity=0.323 Sum_probs=98.0
Q ss_pred HHHhhhCcHHHHHHhhcCCC------HHHHHHHHHHHHHhccCcccccccccccchhchHHhhc----CchHHHHHHHHH
Q 036199 501 SKIVASGALASILNMLDSPN------GKFQELAIKILHNLSSDVDIQSHIAPSEFLPKLVPFLK----DATLAVSCLVIL 570 (710)
Q Consensus 501 ~~I~~~GaI~~LV~LL~~~~------~~~~~~A~~aL~nLs~~~en~~~iv~aG~V~~Lv~lL~----~~~~~~~al~iL 570 (710)
..+...||+..|++++.+|+ .+....++.++..|-.+.-.-+..++...|...+..+. +..+...|+++|
T Consensus 5 ~EFI~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg~vsWd~l~~~FI~Kia~~Vn~~~~d~~i~q~sLaIL 84 (160)
T PF11841_consen 5 QEFISRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHGIVSWDTLSDSFIKKIASYVNSSAMDASILQRSLAIL 84 (160)
T ss_pred HHHHhccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcCcCchhhccHHHHHHHHHHHccccccchHHHHHHHHH
Confidence 34566789999999998877 36778889999998877666677888888888888883 457899999999
Q ss_pred HHHhcCcchHHHHHhhcCChHHHHHHhhcCCHHHHHHHHHHHHHHhcCCh
Q 036199 571 KNMCNTEHARVCVVETSGCLPSVAELLEIGSEEDQEHAVAILLCLCSQRD 620 (710)
Q Consensus 571 ~nLa~~~e~r~~i~~~~g~I~~Lv~lL~~~s~~~ke~A~~aL~~Lc~~~~ 620 (710)
.++..+....-..+..+=-++.|+..|+.++++.+.+|++.+-+|....+
T Consensus 85 Es~Vl~S~~ly~~V~~evt~~~Li~hLq~~~~~iq~naiaLinAL~~kA~ 134 (160)
T PF11841_consen 85 ESIVLNSPKLYQLVEQEVTLESLIRHLQVSNQEIQTNAIALINALFLKAD 134 (160)
T ss_pred HHHHhCCHHHHHHHhccCCHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCC
Confidence 99999877755555546678999999999999999999999988876654
|
|
| >PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger | Back alignment and domain information |
|---|
Probab=96.54 E-value=0.0023 Score=54.32 Aligned_cols=49 Identities=24% Similarity=0.370 Sum_probs=37.8
Q ss_pred CCcccccCCccccCC-ceec-CCCCccchhhHHHHhhh--CCCCCCCCCCccC
Q 036199 266 PEVFKCPLSLRLMYD-PVVI-ESGQTFERMWIQKWFEE--GNHTCPKTKMKLV 314 (710)
Q Consensus 266 p~~f~CPI~~~~m~D-PV~~-~~G~ty~r~~I~~w~~~--g~~~cP~t~~~l~ 314 (710)
+.+-.||.|...=.| |++. .|||.|-.+||.+|++. ++.+||.|+++..
T Consensus 30 ~fdg~Cp~Ck~Pgd~Cplv~g~C~H~FH~hCI~kWl~~~~~~~~CPmCR~~w~ 82 (85)
T PF12861_consen 30 PFDGCCPDCKFPGDDCPLVWGKCSHNFHMHCILKWLSTQSSKGQCPMCRQPWK 82 (85)
T ss_pred ccccCCCCccCCCCCCceeeccCccHHHHHHHHHHHccccCCCCCCCcCCeee
Confidence 445557776665555 6555 99999999999999984 4689999998754
|
|
| >KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.52 E-value=0.13 Score=62.17 Aligned_cols=245 Identities=16% Similarity=0.169 Sum_probs=141.3
Q ss_pred CHHHHHHHHHHHHHHHccCcccchhccc--CCcHHHHHHHhhcccc-----------CCC-HHHHHHHHHHHHHHhccCC
Q 036199 394 NWDCQCKVIEDYETRLEHDNQVSHSLSS--TNFVEPLIRFLRDARD-----------LHD-SRAQRIGCRLLLAFVSKNR 459 (710)
Q Consensus 394 ~~e~q~~Al~~L~~Lak~~~~~r~~I~~--~G~I~~LV~lL~s~~~-----------~~d-~~~q~~A~~~L~nL~~~~~ 459 (710)
+...+..|++-|..+++.-+...+.... .-.++.++..+....+ ..+ ..--..|..+|-.++.+=.
T Consensus 262 ~~~~R~~ALe~ivs~~e~Ap~~~k~~~~~~~~lv~~~l~~mte~~~D~ew~~~d~~ded~~~~~~~~A~~~lDrlA~~L~ 341 (1075)
T KOG2171|consen 262 ENSIRHLALEFLVSLSEYAPAMCKKLALLGHTLVPVLLAMMTEEEDDDEWSNEDDLDEDDEETPYRAAEQALDRLALHLG 341 (1075)
T ss_pred cHHHHHHHHHHHHHHHHhhHHHhhhchhhhccHHHHHHHhcCCcccchhhccccccccccccCcHHHHHHHHHHHHhcCC
Confidence 5677888999888888764433332222 1223333333322100 011 1123445556666654433
Q ss_pred CCCccccccchHHHHHHhccCcHH--HHHHHHHHHhccCchhhHHHhh-hCcHHHHHHhhcCCCHHHHHHHHHHHHHhcc
Q 036199 460 SGIPYLNEDLFSLLASFLHSAAAT--EETLAILVALSSYAYFISKIVA-SGALASILNMLDSPNGKFQELAIKILHNLSS 536 (710)
Q Consensus 460 ~k~~i~~~gaI~~LV~lL~s~~~~--~~Aa~~L~~Ls~~~~nk~~I~~-~GaI~~LV~LL~~~~~~~~~~A~~aL~nLs~ 536 (710)
.+. +-.-.++.+-.+|.+.+-. ..|+.+|..++ ....+..++. ...++.++..|.++.|+++-.|+.||..++.
T Consensus 342 g~~--v~p~~~~~l~~~l~S~~w~~R~AaL~Als~i~-EGc~~~m~~~l~~Il~~Vl~~l~DphprVr~AA~naigQ~st 418 (1075)
T KOG2171|consen 342 GKQ--VLPPLFEALEAMLQSTEWKERHAALLALSVIA-EGCSDVMIGNLPKILPIVLNGLNDPHPRVRYAALNAIGQMST 418 (1075)
T ss_pred hhh--ehHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH-cccHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhhhh
Confidence 222 2344566677777887753 24444444433 2223333333 4678888888999999999999999999997
Q ss_pred C-cccccccccccchhchHHhhcC---chHHHHHHHHHHHHhcCcchHHHHHhh-cCChH-HHHHHhhcCCHHHHHHHHH
Q 036199 537 D-VDIQSHIAPSEFLPKLVPFLKD---ATLAVSCLVILKNMCNTEHARVCVVET-SGCLP-SVAELLEIGSEEDQEHAVA 610 (710)
Q Consensus 537 ~-~en~~~iv~aG~V~~Lv~lL~~---~~~~~~al~iL~nLa~~~e~r~~i~~~-~g~I~-~Lv~lL~~~s~~~ke~A~~ 610 (710)
+ ......-...-.+|.|+..+.+ ..+..+|+.+|-|++..-. +..+... .+.+. .|..++.++++.+||.++.
T Consensus 419 dl~p~iqk~~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~-~~~l~pYLd~lm~~~l~~L~~~~~~~v~e~vvt 497 (1075)
T KOG2171|consen 419 DLQPEIQKKHHERLPPALIALLDSTQNVRVQAHAAAALVNFSEECD-KSILEPYLDGLMEKKLLLLLQSSKPYVQEQAVT 497 (1075)
T ss_pred hhcHHHHHHHHHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCc-HHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHH
Confidence 4 3333333445566788888865 3567788888888775222 1222110 23344 3333555799999999999
Q ss_pred HHHHHhcCChHHHHHHHhCCchHHHHHHhhcCC
Q 036199 611 ILLCLCSQRDQYCKLVMNEGVIPSLVKISVYGN 643 (710)
Q Consensus 611 aL~~Lc~~~~~~~~~v~~~G~v~~Lv~L~~~gt 643 (710)
++.+.+...... =.=.=.-.+|.|..++.+++
T Consensus 498 aIasvA~AA~~~-F~pY~d~~Mp~L~~~L~n~~ 529 (1075)
T KOG2171|consen 498 AIASVADAAQEK-FIPYFDRLMPLLKNFLQNAD 529 (1075)
T ss_pred HHHHHHHHHhhh-hHhHHHHHHHHHHHHHhCCC
Confidence 998887544210 00001134688888877776
|
|
| >PTZ00429 beta-adaptin; Provisional | Back alignment and domain information |
|---|
Probab=96.46 E-value=0.12 Score=61.64 Aligned_cols=213 Identities=11% Similarity=0.088 Sum_probs=131.5
Q ss_pred HHHhhccccCCCHHHHHHHHHHHHHHhccCCCCCccccccchHHHHHHhccCcH--HHHHHHHHHHhccCchhhHHHhhh
Q 036199 429 IRFLRDARDLHDSRAQRIGCRLLLAFVSKNRSGIPYLNEDLFSLLASFLHSAAA--TEETLAILVALSSYAYFISKIVAS 506 (710)
Q Consensus 429 V~lL~s~~~~~d~~~q~~A~~~L~nL~~~~~~k~~i~~~gaI~~LV~lL~s~~~--~~~Aa~~L~~Ls~~~~nk~~I~~~ 506 (710)
++.|..+..+.|+.++-.|+..|.++- ..-+-.-.++.+.+.|.+.+. ++.|+-++..+-... ...+.+.
T Consensus 107 INtl~KDl~d~Np~IRaLALRtLs~Ir------~~~i~e~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~--pelv~~~ 178 (746)
T PTZ00429 107 VNTFLQDTTNSSPVVRALAVRTMMCIR------VSSVLEYTLEPLRRAVADPDPYVRKTAAMGLGKLFHDD--MQLFYQQ 178 (746)
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHcCC------cHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhC--ccccccc
Confidence 344444444478888888888887651 111223455666777776665 457777777765322 2344467
Q ss_pred CcHHHHHHhhcCCCHHHHHHHHHHHHHhccCcccccccccccchhchHHhhcC-chH-HHHHHHHHHHHhc-CcchHHHH
Q 036199 507 GALASILNMLDSPNGKFQELAIKILHNLSSDVDIQSHIAPSEFLPKLVPFLKD-ATL-AVSCLVILKNMCN-TEHARVCV 583 (710)
Q Consensus 507 GaI~~LV~LL~~~~~~~~~~A~~aL~nLs~~~en~~~iv~aG~V~~Lv~lL~~-~~~-~~~al~iL~nLa~-~~e~r~~i 583 (710)
|.++.|.++|.+.++.++.+|+.+|+.+........ -...+.+..|+..|.+ .++ +-..+.+ |+. .+......
T Consensus 179 ~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~~~~~l-~l~~~~~~~Ll~~L~e~~EW~Qi~IL~l---L~~y~P~~~~e~ 254 (746)
T PTZ00429 179 DFKKDLVELLNDNNPVVASNAAAIVCEVNDYGSEKI-ESSNEWVNRLVYHLPECNEWGQLYILEL---LAAQRPSDKESA 254 (746)
T ss_pred chHHHHHHHhcCCCccHHHHHHHHHHHHHHhCchhh-HHHHHHHHHHHHHhhcCChHHHHHHHHH---HHhcCCCCcHHH
Confidence 889999999999999999999999999985433221 1234556666666643 232 4444444 444 23222222
Q ss_pred HhhcCChHHHHHHhhcCCHHHHHHHHHHHHHHhcCC-hHH-HHHHHhCCchHHHHHHhhcCCHHHHHHHHHHHHHhhh
Q 036199 584 VETSGCLPSVAELLEIGSEEDQEHAVAILLCLCSQR-DQY-CKLVMNEGVIPSLVKISVYGNDKAKVSALELRRLLRD 659 (710)
Q Consensus 584 ~~~~g~I~~Lv~lL~~~s~~~ke~A~~aL~~Lc~~~-~~~-~~~v~~~G~v~~Lv~L~~~gt~~~k~kA~~LL~~l~~ 659 (710)
...+..+...|++.++.+.-.|+.+++.+.... +.. ...+.+ +.++|+.|+ ++.+..|--+..-|..+..
T Consensus 255 ---~~il~~l~~~Lq~~N~AVVl~Aik~il~l~~~~~~~~~~~~~~r--l~~pLv~L~-ss~~eiqyvaLr~I~~i~~ 326 (746)
T PTZ00429 255 ---ETLLTRVLPRMSHQNPAVVMGAIKVVANLASRCSQELIERCTVR--VNTALLTLS-RRDAETQYIVCKNIHALLV 326 (746)
T ss_pred ---HHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCcCCHHHHHHHHHH--HHHHHHHhh-CCCccHHHHHHHHHHHHHH
Confidence 135677777888889999999999999887653 221 111111 236677774 5667777777766655544
|
|
| >smart00185 ARM Armadillo/beta-catenin-like repeats | Back alignment and domain information |
|---|
Probab=96.33 E-value=0.0084 Score=43.31 Aligned_cols=40 Identities=35% Similarity=0.451 Sum_probs=35.7
Q ss_pred cchHHHHHhhcCChHHHHHHhhcCCHHHHHHHHHHHHHHhc
Q 036199 577 EHARVCVVETSGCLPSVAELLEIGSEEDQEHAVAILLCLCS 617 (710)
Q Consensus 577 ~e~r~~i~~~~g~I~~Lv~lL~~~s~~~ke~A~~aL~~Lc~ 617 (710)
++++..+.+ .|+++.|+.+|..+++..++.|+++|.+|+.
T Consensus 2 ~~~~~~i~~-~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~~ 41 (41)
T smart00185 2 DEQKQAVVD-AGGLPALVELLKSEDEEVVKEAAWALSNLSS 41 (41)
T ss_pred cHHHHHHHH-CCCHHHHHHHHcCCCHHHHHHHHHHHHHHcC
Confidence 346778888 7999999999999999999999999999873
|
Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin. |
| >KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=96.32 E-value=0.18 Score=55.01 Aligned_cols=216 Identities=13% Similarity=0.174 Sum_probs=156.2
Q ss_pred CcHHHHHHHhhccccCCCHHHHHHHHHHHHHHhccCCCCCcccc-------ccchHHHHHHhccCcHH--HHHHHHHHHh
Q 036199 423 NFVEPLIRFLRDARDLHDSRAQRIGCRLLLAFVSKNRSGIPYLN-------EDLFSLLASFLHSAAAT--EETLAILVAL 493 (710)
Q Consensus 423 G~I~~LV~lL~s~~~~~d~~~q~~A~~~L~nL~~~~~~k~~i~~-------~gaI~~LV~lL~s~~~~--~~Aa~~L~~L 493 (710)
-.+..++.+|+.. ...+..+.....+-.+.+.+..+..+.+ .-.-+..+.+|..++.- +.+..++..+
T Consensus 65 ~~v~~fi~LlS~~---~kdd~v~yvL~li~DmLs~d~sr~~lf~~~a~~~k~~~~~~fl~ll~r~d~~iv~~~~~Ils~l 141 (442)
T KOG2759|consen 65 QYVKTFINLLSHI---DKDDTVQYVLTLIDDMLSEDRSRVDLFHDYAHKLKRTEWLSFLNLLNRQDTFIVEMSFRILSKL 141 (442)
T ss_pred HHHHHHHHHhchh---hhHHHHHHHHHHHHHHHhhCchHHHHHHHHHHhhhccchHHHHHHHhcCChHHHHHHHHHHHHH
Confidence 4577788888752 3345666677777777665555444331 22356677888777653 3477888777
Q ss_pred ccCchhhHHHhhhCc-HHHHHHhhcC-CCHHHHHHHHHHHHHhccCcccccccccccchhchHHhhc-C---chHHHHHH
Q 036199 494 SSYAYFISKIVASGA-LASILNMLDS-PNGKFQELAIKILHNLSSDVDIQSHIAPSEFLPKLVPFLK-D---ATLAVSCL 567 (710)
Q Consensus 494 s~~~~nk~~I~~~Ga-I~~LV~LL~~-~~~~~~~~A~~aL~nLs~~~en~~~iv~aG~V~~Lv~lL~-~---~~~~~~al 567 (710)
+.....+...++-.. ...|-..+.+ .+++...-|+++|..+...++.+..++.+.++..|+..+. . -.++-..+
T Consensus 142 a~~g~~~~~~~e~~~~~~~l~~~l~~~~~~~~~~~~~rcLQ~ll~~~eyR~~~v~adg~~~l~~~l~s~~~~~QlQYqsi 221 (442)
T KOG2759|consen 142 ACFGNCKMELSELDVYKGFLKEQLQSSTNNDYIQFAARCLQTLLRVDEYRYAFVIADGVSLLIRILASTKCGFQLQYQSI 221 (442)
T ss_pred HHhccccccchHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHhcCcchhheeeecCcchhhHHHHhccCcchhHHHHHH
Confidence 765554444333222 3344455555 5678888999999999999999999999999999999993 3 24678889
Q ss_pred HHHHHHhcCcchHHHHHhhcCChHHHHHHhhc-CCHHHHHHHHHHHHHHhcCCh------HHHHHHHhCCchHHHHHHhh
Q 036199 568 VILKNMCNTEHARVCVVETSGCLPSVAELLEI-GSEEDQEHAVAILLCLCSQRD------QYCKLVMNEGVIPSLVKISV 640 (710)
Q Consensus 568 ~iL~nLa~~~e~r~~i~~~~g~I~~Lv~lL~~-~s~~~ke~A~~aL~~Lc~~~~------~~~~~v~~~G~v~~Lv~L~~ 640 (710)
-.++.|.-++...+.+.. -+.|+.|+++++. ...++-.-.++++.|++..++ .....|+..++.+.+-.|..
T Consensus 222 fciWlLtFn~~~ae~~~~-~~li~~L~~Ivk~~~KEKV~Rivlai~~Nll~k~~~~~~~k~~~~~mv~~~v~k~l~~L~~ 300 (442)
T KOG2759|consen 222 FCIWLLTFNPHAAEKLKR-FDLIQDLSDIVKESTKEKVTRIVLAIFRNLLDKGPDRETKKDIASQMVLCKVLKTLQSLEE 300 (442)
T ss_pred HHHHHhhcCHHHHHHHhh-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCchHHHHHHHh
Confidence 999999999888877744 7899999999986 466677788999999998884 45677888888888877765
Q ss_pred cC
Q 036199 641 YG 642 (710)
Q Consensus 641 ~g 642 (710)
.+
T Consensus 301 rk 302 (442)
T KOG2759|consen 301 RK 302 (442)
T ss_pred cC
Confidence 54
|
|
| >COG1413 FOG: HEAT repeat [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=96.25 E-value=0.21 Score=54.07 Aligned_cols=188 Identities=19% Similarity=0.193 Sum_probs=118.5
Q ss_pred CcHHHHHHHhhccccCCCHHHHHHHHHHHHHHhccCCCCCccccccchHHHHHHhccCcHH--HHHHHHHHHhccCchhh
Q 036199 423 NFVEPLIRFLRDARDLHDSRAQRIGCRLLLAFVSKNRSGIPYLNEDLFSLLASFLHSAAAT--EETLAILVALSSYAYFI 500 (710)
Q Consensus 423 G~I~~LV~lL~s~~~~~d~~~q~~A~~~L~nL~~~~~~k~~i~~~gaI~~LV~lL~s~~~~--~~Aa~~L~~Ls~~~~nk 500 (710)
-.++.++++|.+ .+..++..|+..+..+ -...+++.+..+|.+.+.. ..|+.+|.
T Consensus 43 ~~~~~~~~~l~~----~~~~vr~~aa~~l~~~----------~~~~av~~l~~~l~d~~~~vr~~a~~aLg--------- 99 (335)
T COG1413 43 EAADELLKLLED----EDLLVRLSAAVALGEL----------GSEEAVPLLRELLSDEDPRVRDAAADALG--------- 99 (335)
T ss_pred hhHHHHHHHHcC----CCHHHHHHHHHHHhhh----------chHHHHHHHHHHhcCCCHHHHHHHHHHHH---------
Confidence 467888888877 5777887887775544 2456889999999988763 34444332
Q ss_pred HHHhhhCcHHHHHHhhc-CCCHHHHHHHHHHHHHhccCcccccccccccchhchHHhhcCchHHHHHHHHHH-HHhc---
Q 036199 501 SKIVASGALASILNMLD-SPNGKFQELAIKILHNLSSDVDIQSHIAPSEFLPKLVPFLKDATLAVSCLVILK-NMCN--- 575 (710)
Q Consensus 501 ~~I~~~GaI~~LV~LL~-~~~~~~~~~A~~aL~nLs~~~en~~~iv~aG~V~~Lv~lL~~~~~~~~al~iL~-nLa~--- 575 (710)
.++...++++|+.+|. +++..++..|+.+|..+- ...++.+|+..+.+..... +...+. .+..
T Consensus 100 -~~~~~~a~~~li~~l~~d~~~~vR~~aa~aL~~~~----------~~~a~~~l~~~l~~~~~~~-a~~~~~~~~~~~r~ 167 (335)
T COG1413 100 -ELGDPEAVPPLVELLENDENEGVRAAAARALGKLG----------DERALDPLLEALQDEDSGS-AAAALDAALLDVRA 167 (335)
T ss_pred -ccCChhHHHHHHHHHHcCCcHhHHHHHHHHHHhcC----------chhhhHHHHHHhccchhhh-hhhhccchHHHHHH
Confidence 2234568999999998 588999999999998876 3344788888886644211 111110 0000
Q ss_pred -CcchHHHHHhhcCChHHHHHHhhcCCHHHHHHHHHHHHHHhcCChHHHHHHHhCCchHHHHHHhhcCCHHHHHHHHHHH
Q 036199 576 -TEHARVCVVETSGCLPSVAELLEIGSEEDQEHAVAILLCLCSQRDQYCKLVMNEGVIPSLVKISVYGNDKAKVSALELR 654 (710)
Q Consensus 576 -~~e~r~~i~~~~g~I~~Lv~lL~~~s~~~ke~A~~aL~~Lc~~~~~~~~~v~~~G~v~~Lv~L~~~gt~~~k~kA~~LL 654 (710)
..+....+.. ...++.+...+...+..++..|+.+|..+...+ ..+.+.++....+.+...+.++...|
T Consensus 168 ~a~~~l~~~~~-~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~---------~~~~~~l~~~~~~~~~~vr~~~~~~l 237 (335)
T COG1413 168 AAAEALGELGD-PEAIPLLIELLEDEDADVRRAAASALGQLGSEN---------VEAADLLVKALSDESLEVRKAALLAL 237 (335)
T ss_pred HHHHHHHHcCC-hhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch---------hhHHHHHHHHhcCCCHHHHHHHHHHh
Confidence 0001111222 456888888998888899999999998887774 12234444444444444444444433
Q ss_pred H
Q 036199 655 R 655 (710)
Q Consensus 655 ~ 655 (710)
.
T Consensus 238 ~ 238 (335)
T COG1413 238 G 238 (335)
T ss_pred c
Confidence 3
|
|
| >PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway [] | Back alignment and domain information |
|---|
Probab=96.24 E-value=0.074 Score=60.17 Aligned_cols=238 Identities=16% Similarity=0.190 Sum_probs=154.7
Q ss_pred CCCHHHHHHHHHHHHHHHccCcccchhcccCCcHHHHHHHhhccccC-CCHHHHHHHHHHHHHH-hccCCCC-Ccccccc
Q 036199 392 ELNWDCQCKVIEDYETRLEHDNQVSHSLSSTNFVEPLIRFLRDARDL-HDSRAQRIGCRLLLAF-VSKNRSG-IPYLNED 468 (710)
Q Consensus 392 s~~~e~q~~Al~~L~~Lak~~~~~r~~I~~~G~I~~LV~lL~s~~~~-~d~~~q~~A~~~L~nL-~~~~~~k-~~i~~~g 468 (710)
..++++..+|++.|.+..-.++..|..+++.|+.+.++..|+...++ .+.+.+-....+|+-+ +.....+ ..+-+.+
T Consensus 43 ~~~~~v~~EALKCL~N~lf~s~~aR~~~~~~~~~~~l~~~Lk~~~~~~~~~d~~Fl~~RLLFLlTa~~~~~~~~L~~e~~ 122 (446)
T PF10165_consen 43 SPDPDVSREALKCLCNALFLSPSARQIFVDLGLAEKLCERLKNYSDSSQPSDVEFLDSRLLFLLTALRPDDRKKLIEEHH 122 (446)
T ss_pred CCChHHHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHHHHHHcccccCCChhHHHHHHHHHHHHhcCChhHHHHHHHHhh
Confidence 34678889999999999999999999999999999999999874221 2456666666666655 3333333 3333568
Q ss_pred chHHHHHHhcc--------C--------cHH---HHHHHHHHHhccCchhhHHHhhhCcHHHHHHhhcC---------CC
Q 036199 469 LFSLLASFLHS--------A--------AAT---EETLAILVALSSYAYFISKIVASGALASILNMLDS---------PN 520 (710)
Q Consensus 469 aI~~LV~lL~s--------~--------~~~---~~Aa~~L~~Ls~~~~nk~~I~~~GaI~~LV~LL~~---------~~ 520 (710)
++..|+..|.. . ... ..++.+++|+...-.....--..+.++.|+.+|.. ..
T Consensus 123 ~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~EiLKllFNit~~~~~~~~~~~~~~~~~l~~il~~~l~~~~~~~~l 202 (446)
T PF10165_consen 123 GVELLTEALERHLKVKSKSSQEPTAPSPMDEEALSEILKLLFNITLHYPKSVPEEFSPSIPHLVSILRRLLPPPPSSPPL 202 (446)
T ss_pred hHHHHHHHHHHHHhcccccccccCCCCcchHHHHHHHHHHHHHhhhccCcccchhhhHHHHHHHHHHHHHhccCCCCCcc
Confidence 88888877641 0 011 36888999997543332221234556666665431 12
Q ss_pred HHHHHHHHHHHHHhccC-ccc-------c----cccccccchhchHHhhcC-------c---hHHHHHHHHHHHHhcC-c
Q 036199 521 GKFQELAIKILHNLSSD-VDI-------Q----SHIAPSEFLPKLVPFLKD-------A---TLAVSCLVILKNMCNT-E 577 (710)
Q Consensus 521 ~~~~~~A~~aL~nLs~~-~en-------~----~~iv~aG~V~~Lv~lL~~-------~---~~~~~al~iL~nLa~~-~ 577 (710)
.....+++.+|.|+-.. .+. . ..-....+|..|+.+|.. . +...-.+.+|..++.. .
T Consensus 203 ~~~~~~~in~L~nlpl~~~~~l~~~~~~~~~~~~~~~~~~~v~~Ll~~Ld~~l~~~~~~~l~~~l~PlL~lL~~~~~~~~ 282 (446)
T PF10165_consen 203 DPPHSHAINALLNLPLECLDSLLSPKFQQSSLFPEGDNMDVVERLLDFLDKRLDKYEALKLDELLTPLLTLLTRLARAAR 282 (446)
T ss_pred hhhHHHHHHHHhCCChHHHhhhhcccCCcccccCCCCChHHHHHHHHHHHHHHHhcCcccchhhHhhHHHHHHHHHHhcH
Confidence 46678888999888321 111 1 112345577888888721 1 2345567788888875 5
Q ss_pred chHHHHHh---------------hcCChHHHHHHhhcCCHHHHHHHHHHHHHHhcCChHHHHHHHhCCc
Q 036199 578 HARVCVVE---------------TSGCLPSVAELLEIGSEEDQEHAVAILLCLCSQRDQYCKLVMNEGV 631 (710)
Q Consensus 578 e~r~~i~~---------------~~g~I~~Lv~lL~~~s~~~ke~A~~aL~~Lc~~~~~~~~~v~~~G~ 631 (710)
..|..+.. ....-..|++++.+..+..+..+...|+.||..+.. +.+...|.
T Consensus 283 ~~Rk~lr~~lLP~~~Dr~~~~e~~~tL~~rLlrLmt~~~~~~k~~vaellf~Lc~~d~~--~~v~~~Gy 349 (446)
T PF10165_consen 283 EVRKYLRARLLPPDKDRKKPPEKGDTLRSRLLRLMTSPDPQLKDAVAELLFVLCKEDAS--RFVKYVGY 349 (446)
T ss_pred HHHHHHHHHhCCChhhcccCCCCCcchHHHHHHHhCCCCchHHHHHHHHHHHHHhhhHH--HHHHHcCc
Confidence 55555543 123446788888887799999999999999988754 44444443
|
It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion. |
| >COG5369 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.22 E-value=0.067 Score=59.65 Aligned_cols=253 Identities=16% Similarity=0.132 Sum_probs=162.2
Q ss_pred HHHHHHHHccCcccchhcccCCcHHHHHHHhhccccCCCHHHHHHHHHHHHHHh-ccCCCCCccccccchHHHHHHhccC
Q 036199 402 IEDYETRLEHDNQVSHSLSSTNFVEPLIRFLRDARDLHDSRAQRIGCRLLLAFV-SKNRSGIPYLNEDLFSLLASFLHSA 480 (710)
Q Consensus 402 l~~L~~Lak~~~~~r~~I~~~G~I~~LV~lL~s~~~~~d~~~q~~A~~~L~nL~-~~~~~k~~i~~~gaI~~LV~lL~s~ 480 (710)
+.-|..+++.-.--|.-+....+.+.|+.+|+. ++..+.--++..+.|+. .-+.-+..+++.|.|..|+.++.+.
T Consensus 410 ~l~LkS~SrSV~~LRTgL~d~~I~elLi~~Ls~----Peimi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~sK 485 (743)
T COG5369 410 VLFLKSMSRSVTFLRTGLLDYPIVELLIDALSN----PEIMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVMSK 485 (743)
T ss_pred HHHHHHhhHHHHHHHhhccccchHHHHHHHhcC----ccceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhhcc
Confidence 344556655545556677788899999999976 44444445566677763 3334456677899999999999876
Q ss_pred cH--HHHHHHHHHHhccCc--hhhHHHhhhCcHHHHHHhhcCCCHHHHHHHHHHHHHhccC----cccccccccccchh-
Q 036199 481 AA--TEETLAILVALSSYA--YFISKIVASGALASILNMLDSPNGKFQELAIKILHNLSSD----VDIQSHIAPSEFLP- 551 (710)
Q Consensus 481 ~~--~~~Aa~~L~~Ls~~~--~nk~~I~~~GaI~~LV~LL~~~~~~~~~~A~~aL~nLs~~----~en~~~iv~aG~V~- 551 (710)
+. +.+..|+|+.|--+. .-+-...+.-++..++++.+++.-.++......|.|+..+ ++.+....++.--.
T Consensus 486 DdaLqans~wvlrHlmyncq~~ekf~~Lakig~~kvl~~~NDpc~~vq~q~lQilrNftc~~~knEkskdv~~K~~p~~y 565 (743)
T COG5369 486 DDALQANSEWVLRHLMYNCQKNEKFKFLAKIGVEKVLSYTNDPCFKVQHQVLQILRNFTCDTSKNEKSKDVFIKATPRRY 565 (743)
T ss_pred hhhhhhcchhhhhhhhhcCcchhhhhhHHhcCHHHHHHHhcCcccccHHHHHHHHHhcccccccccccceeEEecChHHH
Confidence 55 368899999887433 3344555667789999999999899999999999999863 22344344433323
Q ss_pred ---chHHhhc--CchHHHHHHHHHHHHhcCcchHHHHHh-hcCChHHHHHHhhc--------------------------
Q 036199 552 ---KLVPFLK--DATLAVSCLVILKNMCNTEHARVCVVE-TSGCLPSVAELLEI-------------------------- 599 (710)
Q Consensus 552 ---~Lv~lL~--~~~~~~~al~iL~nLa~~~e~r~~i~~-~~g~I~~Lv~lL~~-------------------------- 599 (710)
.|++.+. ++-.....+-+|-++|.+++....++. ....+..+-++|..
T Consensus 566 lfk~l~~k~e~~np~~i~~~~yilv~~aa~d~~l~~~V~~q~~~L~~i~eil~e~a~r~~L~pg~~~~~v~~p~s~~~v~ 645 (743)
T COG5369 566 LFKRLIDKYEENNPMEILEGCYILVRNAACDDTLDYIVQSQEDMLDSIFEILDEFAGRTPLSPGSKEEHVLLPISYTIVN 645 (743)
T ss_pred HHHHHHHHHHhcCchhhhhhHHHHHHHHhccchHHHHHHhHHHHHHHHHHHHHHHcccCCCCCCCCcccccCccceeeec
Confidence 3344442 343355557777777776665554432 22333333333310
Q ss_pred ---------------------------CCHHHHHHHHHHHHHHhcC---C------hHHHHHHHhCCchHHHHHHhhcCC
Q 036199 600 ---------------------------GSEEDQEHAVAILLCLCSQ---R------DQYCKLVMNEGVIPSLVKISVYGN 643 (710)
Q Consensus 600 ---------------------------~s~~~ke~A~~aL~~Lc~~---~------~~~~~~v~~~G~v~~Lv~L~~~gt 643 (710)
.+.+.--...|+..++... . .+.++.+.+.|.-+-|+.++...+
T Consensus 646 l~e~~d~f~r~~~~~p~~D~~~~d~~~~NdE~~~agiw~~in~~w~~~~~~vtratveR~~iL~~~G~~e~l~k~q~~~S 725 (743)
T COG5369 646 LSENSDKFKRLVLTTPHLDNMKKDSTTRNDELSIAGIWIIINLSWKEDGSEVTRATVERIQILCANGIREWLVKIQAKDS 725 (743)
T ss_pred ccccccccccceecCCCccccccccCCCchhhhhccceEEEecccCccCCccchhhHHHHHHHHHccHHHHHHHHhccCc
Confidence 0111122223332232211 1 145677778899899999999999
Q ss_pred HHHHHHHHHHHHHhh
Q 036199 644 DKAKVSALELRRLLR 658 (710)
Q Consensus 644 ~~~k~kA~~LL~~l~ 658 (710)
+.+++++..+|.+++
T Consensus 726 l~vrek~~taL~~l~ 740 (743)
T COG5369 726 LIVREKIGTALENLR 740 (743)
T ss_pred HHHHHHHHHHHHhhh
Confidence 999999999999876
|
|
| >TIGR02270 conserved hypothetical protein | Back alignment and domain information |
|---|
Probab=96.19 E-value=0.36 Score=53.89 Aligned_cols=58 Identities=14% Similarity=0.007 Sum_probs=37.7
Q ss_pred ChHHHHHHhhcCCHHHHHHHHHHHHHHhcCChHHHHHHHhCCchHHHHHHhhcCCHHHHHHHHHHHHHhhhcc
Q 036199 589 CLPSVAELLEIGSEEDQEHAVAILLCLCSQRDQYCKLVMNEGVIPSLVKISVYGNDKAKVSALELRRLLRDVA 661 (710)
Q Consensus 589 ~I~~Lv~lL~~~s~~~ke~A~~aL~~Lc~~~~~~~~~v~~~G~v~~Lv~L~~~gt~~~k~kA~~LL~~l~~~~ 661 (710)
.++.|..+++. +.+++.++.+|-.+-. ..+++.|+..+.+.. .++.|...++.+...+
T Consensus 241 a~~~L~~ll~d--~~vr~~a~~AlG~lg~-----------p~av~~L~~~l~d~~--~aR~A~eA~~~ItG~~ 298 (410)
T TIGR02270 241 AQAWLRELLQA--AATRREALRAVGLVGD-----------VEAAPWCLEAMREPP--WARLAGEAFSLITGMD 298 (410)
T ss_pred HHHHHHHHhcC--hhhHHHHHHHHHHcCC-----------cchHHHHHHHhcCcH--HHHHHHHHHHHhhCCC
Confidence 45555555544 3366666666654432 235788888776554 8889999999887654
|
Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown. |
| >PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ] | Back alignment and domain information |
|---|
Probab=96.19 E-value=0.031 Score=57.01 Aligned_cols=179 Identities=17% Similarity=0.232 Sum_probs=104.0
Q ss_pred hcCCCHHHHHHHHHHHHHHHccC--cccchhccc--CCcHHHHHHHhhccccCCCHHHHHHHHHHHHHHhccCCCCCccc
Q 036199 390 LTELNWDCQCKVIEDYETRLEHD--NQVSHSLSS--TNFVEPLIRFLRDARDLHDSRAQRIGCRLLLAFVSKNRSGIPYL 465 (710)
Q Consensus 390 L~s~~~e~q~~Al~~L~~Lak~~--~~~r~~I~~--~G~I~~LV~lL~s~~~~~d~~~q~~A~~~L~nL~~~~~~k~~i~ 465 (710)
-.+.+|+.+.+|+..|+.+.+.+ ......+.. ...+..++..+.+ ....+...|+.++..++..-.......
T Consensus 16 ~~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d----~Rs~v~~~A~~~l~~l~~~l~~~~~~~ 91 (228)
T PF12348_consen 16 ESESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSD----LRSKVSKTACQLLSDLARQLGSHFEPY 91 (228)
T ss_dssp HT-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-H----H---HHHHHHHHHHHHHHHHGGGGHHH
T ss_pred CCccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhh----hHHHHHHHHHHHHHHHHHHHhHhHHHH
Confidence 35678999999999999999887 222222211 1344555555544 456778888888888865332222222
Q ss_pred cccchHHHHHHhccCcH--HHHHHHHHHHhccCchhhHHHhhhCcHHHHHHhhcCCCHHHHHHHHHHHHHhccCcc-ccc
Q 036199 466 NEDLFSLLASFLHSAAA--TEETLAILVALSSYAYFISKIVASGALASILNMLDSPNGKFQELAIKILHNLSSDVD-IQS 542 (710)
Q Consensus 466 ~~gaI~~LV~lL~s~~~--~~~Aa~~L~~Ls~~~~nk~~I~~~GaI~~LV~LL~~~~~~~~~~A~~aL~nLs~~~e-n~~ 542 (710)
-...+|.|+..+.++.. .+.|..+|..+...-.....+ .++.+...+.+.++.++..++..|..+..... +..
T Consensus 92 ~~~~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~~~~~----~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~ 167 (228)
T PF12348_consen 92 ADILLPPLLKKLGDSKKFIREAANNALDAIIESCSYSPKI----LLEILSQGLKSKNPQVREECAEWLAIILEKWGSDSS 167 (228)
T ss_dssp HHHHHHHHHHGGG---HHHHHHHHHHHHHHHTTS-H--HH----HHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----G
T ss_pred HHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHCCcHHHH----HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHh
Confidence 45678888888887764 367777777776433211111 15666777788999999999999998876444 333
Q ss_pred cccccc----chhchHHhhcC--chHHHHHHHHHHHHhcC
Q 036199 543 HIAPSE----FLPKLVPFLKD--ATLAVSCLVILKNMCNT 576 (710)
Q Consensus 543 ~iv~aG----~V~~Lv~lL~~--~~~~~~al~iL~nLa~~ 576 (710)
.+-..+ .++.+...+.| +++++.|-.++..+..+
T Consensus 168 ~l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~ 207 (228)
T PF12348_consen 168 VLQKSAFLKQLVKALVKLLSDADPEVREAARECLWALYSH 207 (228)
T ss_dssp GG--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHH
T ss_pred hhcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
Confidence 343333 56667777766 46788888888888653
|
The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A. |
| >PTZ00429 beta-adaptin; Provisional | Back alignment and domain information |
|---|
Probab=96.15 E-value=0.9 Score=54.50 Aligned_cols=241 Identities=10% Similarity=0.086 Sum_probs=152.3
Q ss_pred hhhcCCCHHHHHHHHHHHHHHHccCcccchhcccCCcHHHHHHHhhccccCCCHHHHHHHHHHHHHHhccCCCCCccccc
Q 036199 388 SRLTELNWDCQCKVIEDYETRLEHDNQVSHSLSSTNFVEPLIRFLRDARDLHDSRAQRIGCRLLLAFVSKNRSGIPYLNE 467 (710)
Q Consensus 388 ~~L~s~~~e~q~~Al~~L~~Lak~~~~~r~~I~~~G~I~~LV~lL~s~~~~~d~~~q~~A~~~L~nL~~~~~~k~~i~~~ 467 (710)
..|.+.+...+..|++.+-...-.+.+. ....+.+++++.+ .|.+.++..-..|.+.+....... -
T Consensus 39 ~~L~s~~~~~kk~alKkvIa~mt~G~Dv------S~LF~dVvk~~~S----~d~elKKLvYLYL~~ya~~~pela----l 104 (746)
T PTZ00429 39 NDLNGTDSYRKKAAVKRIIANMTMGRDV------SYLFVDVVKLAPS----TDLELKKLVYLYVLSTARLQPEKA----L 104 (746)
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHCCCCc------hHHHHHHHHHhCC----CCHHHHHHHHHHHHHHcccChHHH----H
Confidence 5677777777888888776554333221 2245566777766 688888888888887754322111 1
Q ss_pred cchHHHHHHhccCcHH--HHHHHHHHHhccCchhhHHHhhhCcHHHHHHhhcCCCHHHHHHHHHHHHHhccCcccccccc
Q 036199 468 DLFSLLASFLHSAAAT--EETLAILVALSSYAYFISKIVASGALASILNMLDSPNGKFQELAIKILHNLSSDVDIQSHIA 545 (710)
Q Consensus 468 gaI~~LV~lL~s~~~~--~~Aa~~L~~Ls~~~~nk~~I~~~GaI~~LV~LL~~~~~~~~~~A~~aL~nLs~~~en~~~iv 545 (710)
=++..+.+=|.+++.. ..|+.+|.++-. ++.- .-.++++.+.|.+.++-+++.|+.++.++-.... ..+.
T Consensus 105 LaINtl~KDl~d~Np~IRaLALRtLs~Ir~-~~i~-----e~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~p--elv~ 176 (746)
T PTZ00429 105 LAVNTFLQDTTNSSPVVRALAVRTMMCIRV-SSVL-----EYTLEPLRRAVADPDPYVRKTAAMGLGKLFHDDM--QLFY 176 (746)
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHcCCc-HHHH-----HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCc--cccc
Confidence 2466666666666653 466666655432 1111 1246777888889999999999999999864322 3445
Q ss_pred cccchhchHHhhcC--chHHHHHHHHHHHHhcCcchHHHHHhhcCChHHHHHHhhcCCHHHHHHHHHHHHHHhcCChHHH
Q 036199 546 PSEFLPKLVPFLKD--ATLAVSCLVILKNMCNTEHARVCVVETSGCLPSVAELLEIGSEEDQEHAVAILLCLCSQRDQYC 623 (710)
Q Consensus 546 ~aG~V~~Lv~lL~~--~~~~~~al~iL~nLa~~~e~r~~i~~~~g~I~~Lv~lL~~~s~~~ke~A~~aL~~Lc~~~~~~~ 623 (710)
+.|.++.|.++|.| +.++..|+.+|..+......+-.+. .+.+..|+..|...+++.|-..+.+|....-.+..
T Consensus 177 ~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~~~~~l~l~--~~~~~~Ll~~L~e~~EW~Qi~IL~lL~~y~P~~~~-- 252 (746)
T PTZ00429 177 QQDFKKDLVELLNDNNPVVASNAAAIVCEVNDYGSEKIESS--NEWVNRLVYHLPECNEWGQLYILELLAAQRPSDKE-- 252 (746)
T ss_pred ccchHHHHHHHhcCCCccHHHHHHHHHHHHHHhCchhhHHH--HHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCcH--
Confidence 67899999999965 5679999999999986433332222 23467777777777899988877777442211111
Q ss_pred HHHHhCCchHHHHHHhhcCCHHHHHHHHHHHHHh
Q 036199 624 KLVMNEGVIPSLVKISVYGNDKAKVSALELRRLL 657 (710)
Q Consensus 624 ~~v~~~G~v~~Lv~L~~~gt~~~k~kA~~LL~~l 657 (710)
.. ..++..+...+++.++-+.-.|.+++-.+
T Consensus 253 -e~--~~il~~l~~~Lq~~N~AVVl~Aik~il~l 283 (746)
T PTZ00429 253 -SA--ETLLTRVLPRMSHQNPAVVMGAIKVVANL 283 (746)
T ss_pred -HH--HHHHHHHHHHhcCCCHHHHHHHHHHHHHh
Confidence 11 23445555555666666665555554444
|
|
| >KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.14 E-value=0.0025 Score=65.86 Aligned_cols=48 Identities=15% Similarity=0.257 Sum_probs=44.1
Q ss_pred cccCCccccCCceecCCCCccchhhHHHHhhhCCCCCCCCCCccCCCC
Q 036199 270 KCPLSLRLMYDPVVIESGQTFERMWIQKWFEEGNHTCPKTKMKLVCQS 317 (710)
Q Consensus 270 ~CPI~~~~m~DPV~~~~G~ty~r~~I~~w~~~g~~~cP~t~~~l~~~~ 317 (710)
.||||..-|.-||.+.|+|.||..||+--+..+..+||+|++++++..
T Consensus 9 eC~IC~nt~n~Pv~l~C~HkFCyiCiKGsy~ndk~~CavCR~pids~i 56 (324)
T KOG0824|consen 9 ECLICYNTGNCPVNLYCFHKFCYICIKGSYKNDKKTCAVCRFPIDSTI 56 (324)
T ss_pred cceeeeccCCcCccccccchhhhhhhcchhhcCCCCCceecCCCCcch
Confidence 499999999999999999999999999977778889999999998753
|
|
| >PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10 | Back alignment and domain information |
|---|
Probab=96.13 E-value=0.023 Score=50.43 Aligned_cols=66 Identities=15% Similarity=0.224 Sum_probs=56.0
Q ss_pred HHHHHHHHHHHhc-CcchHHHHHhhcCChHHHHHHh--hcCCHHHHHHHHHHHHHHhcCChHHHHHHHhC
Q 036199 563 AVSCLVILKNMCN-TEHARVCVVETSGCLPSVAELL--EIGSEEDQEHAVAILLCLCSQRDQYCKLVMNE 629 (710)
Q Consensus 563 ~~~al~iL~nLa~-~~e~r~~i~~~~g~I~~Lv~lL--~~~s~~~ke~A~~aL~~Lc~~~~~~~~~v~~~ 629 (710)
....+.+|+||+. ++..+..+.+ .||||.++..- ...+|-.+|+|+.++.+||.++++++..+.+.
T Consensus 3 K~~lvrlianl~~~~~~~Qd~vr~-~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~eNQ~~I~~L 71 (102)
T PF09759_consen 3 KRDLVRLIANLCYKNKEVQDLVRE-LGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPENQEFIAQL 71 (102)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHH-cCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHHHHHHHHhc
Confidence 4567889999997 7888888888 78899999854 45799999999999999999999888877654
|
Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region []. |
| >KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.11 E-value=0.38 Score=58.41 Aligned_cols=260 Identities=15% Similarity=0.154 Sum_probs=152.6
Q ss_pred cCCCHHHHHHHHHHHHHHHccCcccch-hcccCCcHHHHHHHhhccccCCCHHHHHHHHHHHHHHhccCC---CCCcccc
Q 036199 391 TELNWDCQCKVIEDYETRLEHDNQVSH-SLSSTNFVEPLIRFLRDARDLHDSRAQRIGCRLLLAFVSKNR---SGIPYLN 466 (710)
Q Consensus 391 ~s~~~e~q~~Al~~L~~Lak~~~~~r~-~I~~~G~I~~LV~lL~s~~~~~d~~~q~~A~~~L~nL~~~~~---~k~~i~~ 466 (710)
..++.+.-..+++.+-.++...+..-. .+ ...|..-..+-++ .+-+..++..|+..|..++.... .+..-..
T Consensus 216 ~~~d~~~a~~~l~~l~El~e~~pk~l~~~l--~~ii~~~l~Ia~n--~~l~~~~R~~ALe~ivs~~e~Ap~~~k~~~~~~ 291 (1075)
T KOG2171|consen 216 QDGDDDAAKSALEALIELLESEPKLLRPHL--SQIIQFSLEIAKN--KELENSIRHLALEFLVSLSEYAPAMCKKLALLG 291 (1075)
T ss_pred hccchHHHHHHHHHHHHHHhhchHHHHHHH--HHHHHHHHHHhhc--ccccHHHHHHHHHHHHHHHHhhHHHhhhchhhh
Confidence 344555556677777766655443211 11 1123333333333 23467788888888888765521 1211123
Q ss_pred ccchHHHHHHhccCcH------------------HHHHHHHHHHhccCchhhHHHhhhCcHHHHHHhhcCCCHHHHHHHH
Q 036199 467 EDLFSLLASFLHSAAA------------------TEETLAILVALSSYAYFISKIVASGALASILNMLDSPNGKFQELAI 528 (710)
Q Consensus 467 ~gaI~~LV~lL~s~~~------------------~~~Aa~~L~~Ls~~~~nk~~I~~~GaI~~LV~LL~~~~~~~~~~A~ 528 (710)
.-.++.+..++..... ...|..+|-.|+..=..+. +-.-.++.+-.+|.+.+..-+..|+
T Consensus 292 ~~lv~~~l~~mte~~~D~ew~~~d~~ded~~~~~~~~A~~~lDrlA~~L~g~~--v~p~~~~~l~~~l~S~~w~~R~AaL 369 (1075)
T KOG2171|consen 292 HTLVPVLLAMMTEEEDDDEWSNEDDLDEDDEETPYRAAEQALDRLALHLGGKQ--VLPPLFEALEAMLQSTEWKERHAAL 369 (1075)
T ss_pred ccHHHHHHHhcCCcccchhhccccccccccccCcHHHHHHHHHHHHhcCChhh--ehHHHHHHHHHHhcCCCHHHHHHHH
Confidence 3345555555431110 1245666655553211111 1122345555677899999999999
Q ss_pred HHHHHhccCccccccccc---ccchhchHHhhcC--chHHHHHHHHHHHHhcC--cchHHHHHhhcCChHHHHHHhhc-C
Q 036199 529 KILHNLSSDVDIQSHIAP---SEFLPKLVPFLKD--ATLAVSCLVILKNMCNT--EHARVCVVETSGCLPSVAELLEI-G 600 (710)
Q Consensus 529 ~aL~nLs~~~en~~~iv~---aG~V~~Lv~lL~~--~~~~~~al~iL~nLa~~--~e~r~~i~~~~g~I~~Lv~lL~~-~ 600 (710)
.||..++ +++...+. ..+++..+..|.| +.++-.|+.++..++.+ ++-...- +.-.++.|+..+.+ +
T Consensus 370 ~Als~i~---EGc~~~m~~~l~~Il~~Vl~~l~DphprVr~AA~naigQ~stdl~p~iqk~~--~e~l~~aL~~~ld~~~ 444 (1075)
T KOG2171|consen 370 LALSVIA---EGCSDVMIGNLPKILPIVLNGLNDPHPRVRYAALNAIGQMSTDLQPEIQKKH--HERLPPALIALLDSTQ 444 (1075)
T ss_pred HHHHHHH---cccHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhhhhhhcHHHHHHH--HHhccHHHHHHhcccC
Confidence 9888777 33333322 2344455555666 46788999999999984 3333332 24677889988886 7
Q ss_pred CHHHHHHHHHHHHHHhcCChHHHHHHHhCCchH-HHHHHhhcCCHHHHHHHHHHHHHhhhcc
Q 036199 601 SEEDQEHAVAILLCLCSQRDQYCKLVMNEGVIP-SLVKISVYGNDKAKVSALELRRLLRDVA 661 (710)
Q Consensus 601 s~~~ke~A~~aL~~Lc~~~~~~~~~v~~~G~v~-~Lv~L~~~gt~~~k~kA~~LL~~l~~~~ 661 (710)
+++++.+|+.+|.++....+...-.=.=.|++. .|..|..++++.+|+.|...|.-.....
T Consensus 445 ~~rV~ahAa~al~nf~E~~~~~~l~pYLd~lm~~~l~~L~~~~~~~v~e~vvtaIasvA~AA 506 (1075)
T KOG2171|consen 445 NVRVQAHAAAALVNFSEECDKSILEPYLDGLMEKKLLLLLQSSKPYVQEQAVTAIASVADAA 506 (1075)
T ss_pred chHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHH
Confidence 999999999999998877643211111124444 5566788999999999998887555443
|
|
| >PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A | Back alignment and domain information |
|---|
Probab=96.01 E-value=0.018 Score=49.05 Aligned_cols=83 Identities=24% Similarity=0.420 Sum_probs=65.3
Q ss_pred HHHHHHhh-cCCCHHHHHHHHHHHHHhccCcccccccccccchhchHHhhcCc--hHHHHHHHHHHHHhcCcchHHHHHh
Q 036199 509 LASILNML-DSPNGKFQELAIKILHNLSSDVDIQSHIAPSEFLPKLVPFLKDA--TLAVSCLVILKNMCNTEHARVCVVE 585 (710)
Q Consensus 509 I~~LV~LL-~~~~~~~~~~A~~aL~nLs~~~en~~~iv~aG~V~~Lv~lL~~~--~~~~~al~iL~nLa~~~e~r~~i~~ 585 (710)
||.|++.| .++++.++..|+.+|.++- ...+++.|+.++.++ .++..|+.+|..+- .
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~----------~~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~----------~ 60 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGELG----------DPEAIPALIELLKDEDPMVRRAAARALGRIG----------D 60 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHCCT----------HHHHHHHHHHHHTSSSHHHHHHHHHHHHCCH----------H
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHcC----------CHhHHHHHHHHHcCCCHHHHHHHHHHHHHhC----------C
Confidence 68999999 8889999999999998442 336799999999664 56888888888762 2
Q ss_pred hcCChHHHHHHhhcC-CHHHHHHHHHHH
Q 036199 586 TSGCLPSVAELLEIG-SEEDQEHAVAIL 612 (710)
Q Consensus 586 ~~g~I~~Lv~lL~~~-s~~~ke~A~~aL 612 (710)
...++.|.+++... +...+..|+.+|
T Consensus 61 -~~~~~~L~~~l~~~~~~~vr~~a~~aL 87 (88)
T PF13646_consen 61 -PEAIPALIKLLQDDDDEVVREAAAEAL 87 (88)
T ss_dssp -HHTHHHHHHHHTC-SSHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHcCCCcHHHHHHHHhhc
Confidence 45789999999875 556688888877
|
|
| >PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term | Back alignment and domain information |
|---|
Probab=95.91 E-value=0.18 Score=55.65 Aligned_cols=253 Identities=16% Similarity=0.141 Sum_probs=162.7
Q ss_pred HHHHHHHccCcccchhcccCCcHHHHHHHhhccccCCCHHHHHHHHHHHHHHhccCCCCCccccccchHHHHHHhccCcH
Q 036199 403 EDYETRLEHDNQVSHSLSSTNFVEPLIRFLRDARDLHDSRAQRIGCRLLLAFVSKNRSGIPYLNEDLFSLLASFLHSAAA 482 (710)
Q Consensus 403 ~~L~~Lak~~~~~r~~I~~~G~I~~LV~lL~s~~~~~d~~~q~~A~~~L~nL~~~~~~k~~i~~~gaI~~LV~lL~s~~~ 482 (710)
..+-.+.+..++-+..+.-.-+.+.+..++-+ ++.+++..|..++..+..+...-..+.+.+.--.++.-|..+..
T Consensus 5 N~Lv~l~~~~p~l~~~~~~~~~~~~i~~~lL~----~~~~vraa~yRilRy~i~d~~~l~~~~~l~id~~ii~SL~~~~~ 80 (371)
T PF14664_consen 5 NDLVDLLKRHPTLKYDLVLSFFGERIQCMLLS----DSKEVRAAGYRILRYLISDEESLQILLKLHIDIFIIRSLDRDNK 80 (371)
T ss_pred HHHHHHHHhCchhhhhhhHHHHHHHHHHHHCC----CcHHHHHHHHHHHHHHHcCHHHHHHHHHcCCchhhHhhhcccCC
Confidence 34555666666666555555566666654433 35778878888888887766554444555666666777765442
Q ss_pred ----HHHHHHHHHHhccCchhhHHHhhhCcHHHHHHhhcCCCHHHHHHHHHHHHHhccCcccccccccccchhchHHhhc
Q 036199 483 ----TEETLAILVALSSYAYFISKIVASGALASILNMLDSPNGKFQELAIKILHNLSSDVDIQSHIAPSEFLPKLVPFLK 558 (710)
Q Consensus 483 ----~~~Aa~~L~~Ls~~~~nk~~I~~~GaI~~LV~LL~~~~~~~~~~A~~aL~nLs~~~en~~~iv~aG~V~~Lv~lL~ 558 (710)
++.|...++.+.....+... .-.|.+..||.+....+...+..|+.+|+.|+..+ -..++++||+..|++.+-
T Consensus 81 ~~~ER~QALkliR~~l~~~~~~~~-~~~~vvralvaiae~~~D~lr~~cletL~El~l~~--P~lv~~~gG~~~L~~~l~ 157 (371)
T PF14664_consen 81 NDVEREQALKLIRAFLEIKKGPKE-IPRGVVRALVAIAEHEDDRLRRICLETLCELALLN--PELVAECGGIRVLLRALI 157 (371)
T ss_pred ChHHHHHHHHHHHHHHHhcCCccc-CCHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhC--HHHHHHcCCHHHHHHHHH
Confidence 25888888766644332222 24678999999999889999999999999999632 234668999999999996
Q ss_pred Cc--hHHHHHHHHHHHHhcCcchHHHHHhhcCChHHHHHHhhc-------CCH--HHHHHHHHHHHHHhcCChHHHHHHH
Q 036199 559 DA--TLAVSCLVILKNMCNTEHARVCVVETSGCLPSVAELLEI-------GSE--EDQEHAVAILLCLCSQRDQYCKLVM 627 (710)
Q Consensus 559 ~~--~~~~~al~iL~nLa~~~e~r~~i~~~~g~I~~Lv~lL~~-------~s~--~~ke~A~~aL~~Lc~~~~~~~~~v~ 627 (710)
++ .+.+.++.++-.+-.++..|..+.. .--+..++.-... ++. +.-..+..++..+-..=+.....-.
T Consensus 158 d~~~~~~~~l~~~lL~lLd~p~tR~yl~~-~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GLl~l~~ 236 (371)
T PF14664_consen 158 DGSFSISESLLDTLLYLLDSPRTRKYLRP-GFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGLLYLSM 236 (371)
T ss_pred hccHhHHHHHHHHHHHHhCCcchhhhhcC-CccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCceeeeec
Confidence 64 5678888999999999999987765 2334444443321 122 1222333333322211111111111
Q ss_pred h-CCchHHHHHHhhcCCHHHHHHHHHHHHHhhhccCC
Q 036199 628 N-EGVIPSLVKISVYGNDKAKVSALELRRLLRDVAYS 663 (710)
Q Consensus 628 ~-~G~v~~Lv~L~~~gt~~~k~kA~~LL~~l~~~~~~ 663 (710)
. ..++..|++.+.-.+++.|+....++.-+=+....
T Consensus 237 ~~~~~lksLv~~L~~p~~~ir~~Ildll~dllrik~p 273 (371)
T PF14664_consen 237 NDFRGLKSLVDSLRLPNPEIRKAILDLLFDLLRIKPP 273 (371)
T ss_pred CCchHHHHHHHHHcCCCHHHHHHHHHHHHHHHCCCCC
Confidence 1 24678899999999999999999988755555444
|
|
| >PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway [] | Back alignment and domain information |
|---|
Probab=95.77 E-value=0.44 Score=53.96 Aligned_cols=259 Identities=13% Similarity=0.103 Sum_probs=161.0
Q ss_pred HHHHHHHHccCcccchhcccCCcHHHHHHHh------hccccCCCHHHHHHHHHHHHHH-hccCCCCCccccccchHHHH
Q 036199 402 IEDYETRLEHDNQVSHSLSSTNFVEPLIRFL------RDARDLHDSRAQRIGCRLLLAF-VSKNRSGIPYLNEDLFSLLA 474 (710)
Q Consensus 402 l~~L~~Lak~~~~~r~~I~~~G~I~~LV~lL------~s~~~~~d~~~q~~A~~~L~nL-~~~~~~k~~i~~~gaI~~LV 474 (710)
+..||.+..+ +.+..-+....++..|.++= .......+..+...|..+|.|+ ..+...+...++.|..+.++
T Consensus 2 L~~LRiLsRd-~~~~~~l~~~~~l~~L~~~a~l~~~~~~~~~~~~~~v~~EALKCL~N~lf~s~~aR~~~~~~~~~~~l~ 80 (446)
T PF10165_consen 2 LETLRILSRD-PTGLDPLFTEEGLSTLLKHAGLSESDEDEFESPDPDVSREALKCLCNALFLSPSARQIFVDLGLAEKLC 80 (446)
T ss_pred HHHHHHHccC-cccchhhccHHHHHHHHHhcCCcccccccccCCChHHHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHH
Confidence 4455555543 33444455555555555544 0012346789999999999998 45556677778899999999
Q ss_pred HHhccCc-----HH--HHHHHHHHHhc-cCchhhHHHhh-hCcHHHHHHhhc----------C-------CCHHHHHHHH
Q 036199 475 SFLHSAA-----AT--EETLAILVALS-SYAYFISKIVA-SGALASILNMLD----------S-------PNGKFQELAI 528 (710)
Q Consensus 475 ~lL~s~~-----~~--~~Aa~~L~~Ls-~~~~nk~~I~~-~GaI~~LV~LL~----------~-------~~~~~~~~A~ 528 (710)
..|+... .. --...+|+-++ .....+..+.+ .+++..|+..|. . .+......++
T Consensus 81 ~~Lk~~~~~~~~~d~~Fl~~RLLFLlTa~~~~~~~~L~~e~~~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~EiL 160 (446)
T PF10165_consen 81 ERLKNYSDSSQPSDVEFLDSRLLFLLTALRPDDRKKLIEEHHGVELLTEALERHLKVKSKSSQEPTAPSPMDEEALSEIL 160 (446)
T ss_pred HHHHcccccCCChhHHHHHHHHHHHHhcCChhHHHHHHHHhhhHHHHHHHHHHHHhcccccccccCCCCcchHHHHHHHH
Confidence 9998762 21 26778887776 45566666664 678888777662 1 1345677889
Q ss_pred HHHHHhccCcccccccccccchhchHHhhc--------Cc---hHHHHHHHHHHHHhc-Ccch-------HHHH---Hhh
Q 036199 529 KILHNLSSDVDIQSHIAPSEFLPKLVPFLK--------DA---TLAVSCLVILKNMCN-TEHA-------RVCV---VET 586 (710)
Q Consensus 529 ~aL~nLs~~~en~~~iv~aG~V~~Lv~lL~--------~~---~~~~~al~iL~nLa~-~~e~-------r~~i---~~~ 586 (710)
+++||+..+......-...+.++.|+.+|. +. .....++.+|.|+-- +.+. ...+ ...
T Consensus 161 KllFNit~~~~~~~~~~~~~~~~~l~~il~~~l~~~~~~~~l~~~~~~~in~L~nlpl~~~~~l~~~~~~~~~~~~~~~~ 240 (446)
T PF10165_consen 161 KLLFNITLHYPKSVPEEFSPSIPHLVSILRRLLPPPPSSPPLDPPHSHAINALLNLPLECLDSLLSPKFQQSSLFPEGDN 240 (446)
T ss_pred HHHHHhhhccCcccchhhhHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHhCCChHHHhhhhcccCCcccccCCCCC
Confidence 999999865443332234566666666642 11 346667777777722 1111 0001 111
Q ss_pred cCChHHHHHHhhc----CC----HHHHHHHHHHHHHHhcCChHHHHHHHh----------------CCchHHHHHHhhcC
Q 036199 587 SGCLPSVAELLEI----GS----EEDQEHAVAILLCLCSQRDQYCKLVMN----------------EGVIPSLVKISVYG 642 (710)
Q Consensus 587 ~g~I~~Lv~lL~~----~s----~~~ke~A~~aL~~Lc~~~~~~~~~v~~----------------~G~v~~Lv~L~~~g 642 (710)
...+..|+.+|.. .. .+.-..-+.+|..+|..+...++.+.. ...-..|+.|+.+.
T Consensus 241 ~~~v~~Ll~~Ld~~l~~~~~~~l~~~l~PlL~lL~~~~~~~~~~Rk~lr~~lLP~~~Dr~~~~e~~~tL~~rLlrLmt~~ 320 (446)
T PF10165_consen 241 MDVVERLLDFLDKRLDKYEALKLDELLTPLLTLLTRLARAAREVRKYLRARLLPPDKDRKKPPEKGDTLRSRLLRLMTSP 320 (446)
T ss_pred hHHHHHHHHHHHHHHHhcCcccchhhHhhHHHHHHHHHHhcHHHHHHHHHHhCCChhhcccCCCCCcchHHHHHHHhCCC
Confidence 2346777777763 11 234456677788888876555554443 22345788888888
Q ss_pred CHHHHHHHHHHHHHhhhcc
Q 036199 643 NDKAKVSALELRRLLRDVA 661 (710)
Q Consensus 643 t~~~k~kA~~LL~~l~~~~ 661 (710)
.+..|..+..+|..|++.+
T Consensus 321 ~~~~k~~vaellf~Lc~~d 339 (446)
T PF10165_consen 321 DPQLKDAVAELLFVLCKED 339 (446)
T ss_pred CchHHHHHHHHHHHHHhhh
Confidence 8999999999998887543
|
It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion. |
| >PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A | Back alignment and domain information |
|---|
Probab=95.74 E-value=0.055 Score=46.06 Aligned_cols=84 Identities=15% Similarity=0.267 Sum_probs=64.0
Q ss_pred HHHHHHHhhccccCCCHHHHHHHHHHHHHHhccCCCCCccccccchHHHHHHhccCcHH--HHHHHHHHHhccCchhhHH
Q 036199 425 VEPLIRFLRDARDLHDSRAQRIGCRLLLAFVSKNRSGIPYLNEDLFSLLASFLHSAAAT--EETLAILVALSSYAYFISK 502 (710)
Q Consensus 425 I~~LV~lL~s~~~~~d~~~q~~A~~~L~nL~~~~~~k~~i~~~gaI~~LV~lL~s~~~~--~~Aa~~L~~Ls~~~~nk~~ 502 (710)
|+.|++.|.++ .++.++..++.+|..+ ....+++.|+.++++++.. ..|+.+|..+
T Consensus 1 i~~L~~~l~~~---~~~~vr~~a~~~L~~~----------~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~i--------- 58 (88)
T PF13646_consen 1 IPALLQLLQND---PDPQVRAEAARALGEL----------GDPEAIPALIELLKDEDPMVRRAAARALGRI--------- 58 (88)
T ss_dssp HHHHHHHHHTS---SSHHHHHHHHHHHHCC----------THHHHHHHHHHHHTSSSHHHHHHHHHHHHCC---------
T ss_pred CHHHHHHHhcC---CCHHHHHHHHHHHHHc----------CCHhHHHHHHHHHcCCCHHHHHHHHHHHHHh---------
Confidence 67899988432 7899999999998833 2457899999999887763 5777777655
Q ss_pred HhhhCcHHHHHHhhcCC-CHHHHHHHHHHH
Q 036199 503 IVASGALASILNMLDSP-NGKFQELAIKIL 531 (710)
Q Consensus 503 I~~~GaI~~LV~LL~~~-~~~~~~~A~~aL 531 (710)
+...+++.|++++.++ +..++..|+.+|
T Consensus 59 -~~~~~~~~L~~~l~~~~~~~vr~~a~~aL 87 (88)
T PF13646_consen 59 -GDPEAIPALIKLLQDDDDEVVREAAAEAL 87 (88)
T ss_dssp -HHHHTHHHHHHHHTC-SSHHHHHHHHHHH
T ss_pred -CCHHHHHHHHHHHcCCCcHHHHHHHHhhc
Confidence 4556899999999765 455688888877
|
|
| >KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.69 E-value=0.0041 Score=72.02 Aligned_cols=48 Identities=25% Similarity=0.542 Sum_probs=42.2
Q ss_pred CCCcccccCCccccCC-----ceecCCCCccchhhHHHHhhhCCCCCCCCCCcc
Q 036199 265 IPEVFKCPLSLRLMYD-----PVVIESGQTFERMWIQKWFEEGNHTCPKTKMKL 313 (710)
Q Consensus 265 ~p~~f~CPI~~~~m~D-----PV~~~~G~ty~r~~I~~w~~~g~~~cP~t~~~l 313 (710)
...+-.|+||.|.|.. |-.++|||.|...|++.|++. ..+||.|+..+
T Consensus 288 ~~~~~~C~IC~e~l~~~~~~~~~rL~C~Hifh~~CL~~W~er-~qtCP~CR~~~ 340 (543)
T KOG0802|consen 288 ALSDELCIICLEELHSGHNITPKRLPCGHIFHDSCLRSWFER-QQTCPTCRTVL 340 (543)
T ss_pred hhcCCeeeeechhhccccccccceeecccchHHHHHHHHHHH-hCcCCcchhhh
Confidence 3457789999999999 788999999999999999997 67999998743
|
|
| >KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.66 E-value=0.0054 Score=63.26 Aligned_cols=55 Identities=24% Similarity=0.438 Sum_probs=43.5
Q ss_pred ccccCCccccCCceecCCCCccchhhHHHHhhhCCCCCCCCCCccCCCCCcccHHHH
Q 036199 269 FKCPLSLRLMYDPVVIESGQTFERMWIQKWFEEGNHTCPKTKMKLVCQSLTPNTAMK 325 (710)
Q Consensus 269 f~CPI~~~~m~DPV~~~~G~ty~r~~I~~w~~~g~~~cP~t~~~l~~~~l~pN~~l~ 325 (710)
|-|=||.+.+.+||++.|||+||..|--+-+..| ..|++|++.... ...+-..|.
T Consensus 242 f~c~icr~~f~~pVvt~c~h~fc~~ca~~~~qk~-~~c~vC~~~t~g-~~~~akeL~ 296 (313)
T KOG1813|consen 242 FKCFICRKYFYRPVVTKCGHYFCEVCALKPYQKG-EKCYVCSQQTHG-SFNVAKELL 296 (313)
T ss_pred ccccccccccccchhhcCCceeehhhhccccccC-Ccceeccccccc-ccchHHHHH
Confidence 8899999999999999999999999988888754 479999886433 333433333
|
|
| >PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ] | Back alignment and domain information |
|---|
Probab=95.61 E-value=0.072 Score=54.30 Aligned_cols=149 Identities=15% Similarity=0.167 Sum_probs=91.5
Q ss_pred CcHHHHHHhhcCCCHHHHHHHHHHHHHhccCcccccccccccchhchHHhhcCc--hHHHHHHHHHHHHhcCcchHHHHH
Q 036199 507 GALASILNMLDSPNGKFQELAIKILHNLSSDVDIQSHIAPSEFLPKLVPFLKDA--TLAVSCLVILKNMCNTEHARVCVV 584 (710)
Q Consensus 507 GaI~~LV~LL~~~~~~~~~~A~~aL~nLs~~~en~~~iv~aG~V~~Lv~lL~~~--~~~~~al~iL~nLa~~~e~r~~i~ 584 (710)
..+..++..+.+....+...|+.++..|+..-.+.-.-.-...+|.|++.+.++ -+.+.|..+|..++.+-.....+.
T Consensus 53 ~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~~~~~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~~~~~~ 132 (228)
T PF12348_consen 53 QLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHFEPYADILLPPLLKKLGDSKKFIREAANNALDAIIESCSYSPKIL 132 (228)
T ss_dssp ---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHGGG---HHHHHHHHHHHHHHHTTS-H--HHH
T ss_pred HhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHCCcHHHHH
Confidence 445666677766666777888888888886444432223355788899988764 468888888888887533111111
Q ss_pred hhcCChHHHHHHhhcCCHHHHHHHHHHHHHHhcCChHHHHHHHh----CCchHHHHHHhhcCCHHHHHHHHHHHHHhhhc
Q 036199 585 ETSGCLPSVAELLEIGSEEDQEHAVAILLCLCSQRDQYCKLVMN----EGVIPSLVKISVYGNDKAKVSALELRRLLRDV 660 (710)
Q Consensus 585 ~~~g~I~~Lv~lL~~~s~~~ke~A~~aL~~Lc~~~~~~~~~v~~----~G~v~~Lv~L~~~gt~~~k~kA~~LL~~l~~~ 660 (710)
++.+...+.+.++..+..++..|..+....+.....+.. ..+++.+..++.++++.+|+.|..++..|.++
T Consensus 133 -----~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~ 207 (228)
T PF12348_consen 133 -----LEILSQGLKSKNPQVREECAEWLAIILEKWGSDSSVLQKSAFLKQLVKALVKLLSDADPEVREAARECLWALYSH 207 (228)
T ss_dssp -----HHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GGG--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHH
T ss_pred -----HHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhhhcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
Confidence 344555677789999999999988876655411122222 34677888889999999999999999988665
|
The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A. |
| >KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.46 E-value=0.0092 Score=63.94 Aligned_cols=46 Identities=17% Similarity=0.390 Sum_probs=39.6
Q ss_pred ccccCCccccCC--c-eecCCCCccchhhHHHHhhhCCCCCCCCCCccC
Q 036199 269 FKCPLSLRLMYD--P-VVIESGQTFERMWIQKWFEEGNHTCPKTKMKLV 314 (710)
Q Consensus 269 f~CPI~~~~m~D--P-V~~~~G~ty~r~~I~~w~~~g~~~cP~t~~~l~ 314 (710)
+.|-||+|-+.+ - ++++|+|.|-..||..|+.+..++||+|++...
T Consensus 230 ~~CaIClEdY~~GdklRiLPC~H~FH~~CIDpWL~~~r~~CPvCK~di~ 278 (348)
T KOG4628|consen 230 DTCAICLEDYEKGDKLRILPCSHKFHVNCIDPWLTQTRTFCPVCKRDIR 278 (348)
T ss_pred ceEEEeecccccCCeeeEecCCCchhhccchhhHhhcCccCCCCCCcCC
Confidence 899999998864 3 467999999999999999987778999998543
|
|
| >PF04641 Rtf2: Rtf2 RING-finger | Back alignment and domain information |
|---|
Probab=95.46 E-value=0.011 Score=62.01 Aligned_cols=65 Identities=15% Similarity=0.332 Sum_probs=47.7
Q ss_pred CCCcccccCCccccCC--c-eec-CCCCccchhhHHHHhhhCCCCCCCCCCccCCCCCcc----cHHHHHHHHHH
Q 036199 265 IPEVFKCPLSLRLMYD--P-VVI-ESGQTFERMWIQKWFEEGNHTCPKTKMKLVCQSLTP----NTAMKDLISKW 331 (710)
Q Consensus 265 ~p~~f~CPI~~~~m~D--P-V~~-~~G~ty~r~~I~~w~~~g~~~cP~t~~~l~~~~l~p----N~~l~~~i~~w 331 (710)
-...|.||||+..|.. + |.+ +|||.|...+|++-- ....||.|++++...+++| +-.+..+.+.|
T Consensus 110 ~~~~~~CPvt~~~~~~~~~fv~l~~cG~V~s~~alke~k--~~~~Cp~c~~~f~~~DiI~Lnp~~ee~~~l~~~~ 182 (260)
T PF04641_consen 110 SEGRFICPVTGKEFNGKHKFVYLRPCGCVFSEKALKELK--KSKKCPVCGKPFTEEDIIPLNPPEEELEKLRERM 182 (260)
T ss_pred CCceeECCCCCcccCCceeEEEEcCCCCEeeHHHHHhhc--ccccccccCCccccCCEEEecCCccHHHHHHHHH
Confidence 3567999999999954 2 333 999999999999873 3457999999999877553 22444444444
|
|
| >TIGR02270 conserved hypothetical protein | Back alignment and domain information |
|---|
Probab=95.28 E-value=0.68 Score=51.74 Aligned_cols=150 Identities=15% Similarity=0.054 Sum_probs=101.1
Q ss_pred CCcHHHHHHHhhccccCCCHHHHHHHHHHHHHHhccCCCCCccccccchHHHHHHhccCcH--HHHHHHHHHHhccCchh
Q 036199 422 TNFVEPLIRFLRDARDLHDSRAQRIGCRLLLAFVSKNRSGIPYLNEDLFSLLASFLHSAAA--TEETLAILVALSSYAYF 499 (710)
Q Consensus 422 ~G~I~~LV~lL~s~~~~~d~~~q~~A~~~L~nL~~~~~~k~~i~~~gaI~~LV~lL~s~~~--~~~Aa~~L~~Ls~~~~n 499 (710)
..+++.++..|..+ .+.++...++.++... + ...++..|+..|.+... ...++.+|.
T Consensus 53 ~~a~~~L~~aL~~d---~~~ev~~~aa~al~~~--~--------~~~~~~~L~~~L~d~~~~vr~aaa~ALg-------- 111 (410)
T TIGR02270 53 KAATELLVSALAEA---DEPGRVACAALALLAQ--E--------DALDLRSVLAVLQAGPEGLCAGIQAALG-------- 111 (410)
T ss_pred HhHHHHHHHHHhhC---CChhHHHHHHHHHhcc--C--------ChHHHHHHHHHhcCCCHHHHHHHHHHHh--------
Confidence 34678888888542 4455555444444321 1 12248889999887654 235555553
Q ss_pred hHHHhhhCcHHHHHHhhcCCCHHHHHHHHHHHHHhccCcccccccccccchhchHHhhcC--chHHHHHHHHHHHHhcCc
Q 036199 500 ISKIVASGALASILNMLDSPNGKFQELAIKILHNLSSDVDIQSHIAPSEFLPKLVPFLKD--ATLAVSCLVILKNMCNTE 577 (710)
Q Consensus 500 k~~I~~~GaI~~LV~LL~~~~~~~~~~A~~aL~nLs~~~en~~~iv~aG~V~~Lv~lL~~--~~~~~~al~iL~nLa~~~ 577 (710)
.|...++.+.|+.+|.+.++.++..++.++.. ......++|+.+|.+ +.+...|+.+|..|-.
T Consensus 112 --~i~~~~a~~~L~~~L~~~~p~vR~aal~al~~-----------r~~~~~~~L~~~L~d~d~~Vra~A~raLG~l~~-- 176 (410)
T TIGR02270 112 --WLGGRQAEPWLEPLLAASEPPGRAIGLAALGA-----------HRHDPGPALEAALTHEDALVRAAALRALGELPR-- 176 (410)
T ss_pred --cCCchHHHHHHHHHhcCCChHHHHHHHHHHHh-----------hccChHHHHHHHhcCCCHHHHHHHHHHHHhhcc--
Confidence 24556778899999998899888888877765 123356788888855 4567888888877642
Q ss_pred chHHHHHhhcCChHHHHHHhhcCCHHHHHHHHHHHHHHh
Q 036199 578 HARVCVVETSGCLPSVAELLEIGSEEDQEHAVAILLCLC 616 (710)
Q Consensus 578 e~r~~i~~~~g~I~~Lv~lL~~~s~~~ke~A~~aL~~Lc 616 (710)
..+++.|...+...++.++..|+.+|..+-
T Consensus 177 ---------~~a~~~L~~al~d~~~~VR~aA~~al~~lG 206 (410)
T TIGR02270 177 ---------RLSESTLRLYLRDSDPEVRFAALEAGLLAG 206 (410)
T ss_pred ---------ccchHHHHHHHcCCCHHHHHHHHHHHHHcC
Confidence 356777888888889999999998886663
|
Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown. |
| >KOG3039 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.18 E-value=0.0095 Score=59.72 Aligned_cols=36 Identities=31% Similarity=0.465 Sum_probs=32.1
Q ss_pred CCCcccccCCccccCCceecCCCCccchhhHHHHhh
Q 036199 265 IPEVFKCPLSLRLMYDPVVIESGQTFERMWIQKWFE 300 (710)
Q Consensus 265 ~p~~f~CPI~~~~m~DPV~~~~G~ty~r~~I~~w~~ 300 (710)
|-+.=+|.+|++..+|||+.+.||-|||+||.++|-
T Consensus 40 iK~FdcCsLtLqPc~dPvit~~GylfdrEaILe~il 75 (303)
T KOG3039|consen 40 IKPFDCCSLTLQPCRDPVITPDGYLFDREAILEYIL 75 (303)
T ss_pred cCCcceeeeecccccCCccCCCCeeeeHHHHHHHHH
Confidence 444558999999999999999999999999999874
|
|
| >KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.16 E-value=0.013 Score=61.34 Aligned_cols=55 Identities=25% Similarity=0.374 Sum_probs=45.9
Q ss_pred ccccCCCCCcccccCCccccCCceec-CCCCccchhhHHHHhhhCCCCCCCCCCccC
Q 036199 259 NLSRAIIPEVFKCPLSLRLMYDPVVI-ESGQTFERMWIQKWFEEGNHTCPKTKMKLV 314 (710)
Q Consensus 259 ~~~~~~~p~~f~CPI~~~~m~DPV~~-~~G~ty~r~~I~~w~~~g~~~cP~t~~~l~ 314 (710)
+......|+.=.||+|+.--.+|-++ .+|..||-.||-.+.. .+.+||+|+.|..
T Consensus 291 se~e~l~~~~~~CpvClk~r~Nptvl~vSGyVfCY~Ci~~Yv~-~~~~CPVT~~p~~ 346 (357)
T KOG0826|consen 291 SESELLPPDREVCPVCLKKRQNPTVLEVSGYVFCYPCIFSYVV-NYGHCPVTGYPAS 346 (357)
T ss_pred cccccCCCccccChhHHhccCCCceEEecceEEeHHHHHHHHH-hcCCCCccCCcch
Confidence 33455667789999999999999877 5599999999999998 5778999988754
|
|
| >KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.08 E-value=0.023 Score=58.12 Aligned_cols=50 Identities=20% Similarity=0.217 Sum_probs=41.6
Q ss_pred CCCcccccCCccccCCceecC-CCCccchhhHHHHhh-hCCCCCCCCCCccC
Q 036199 265 IPEVFKCPLSLRLMYDPVVIE-SGQTFERMWIQKWFE-EGNHTCPKTKMKLV 314 (710)
Q Consensus 265 ~p~~f~CPI~~~~m~DPV~~~-~G~ty~r~~I~~w~~-~g~~~cP~t~~~l~ 314 (710)
-..+-.||+|++-=.-|.++. |||.||.-||..-+. ....+||.|+.+..
T Consensus 236 ~t~~~~C~~Cg~~PtiP~~~~~C~HiyCY~Ci~ts~~~~asf~Cp~Cg~~~~ 287 (298)
T KOG2879|consen 236 GTSDTECPVCGEPPTIPHVIGKCGHIYCYYCIATSRLWDASFTCPLCGENVE 287 (298)
T ss_pred ccCCceeeccCCCCCCCeeeccccceeehhhhhhhhcchhhcccCccCCCCc
Confidence 345678999999999999885 999999999999754 34679999987654
|
|
| >KOG0212 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.01 E-value=0.58 Score=52.84 Aligned_cols=188 Identities=14% Similarity=0.178 Sum_probs=127.6
Q ss_pred CCcHHHHHHHhhccccCCCHHHHHHHHHHHHHHhccCCCCCccccccchHHHHHHhccCcHH---HHHHH---HHHHhcc
Q 036199 422 TNFVEPLIRFLRDARDLHDSRAQRIGCRLLLAFVSKNRSGIPYLNEDLFSLLASFLHSAAAT---EETLA---ILVALSS 495 (710)
Q Consensus 422 ~G~I~~LV~lL~s~~~~~d~~~q~~A~~~L~nL~~~~~~k~~i~~~gaI~~LV~lL~s~~~~---~~Aa~---~L~~Ls~ 495 (710)
...++.+|.-+.+ +++..|..|+..|..+..-...-....-.|++..+..++.+.... +.|.. .|..+..
T Consensus 249 ~~~i~vlv~~l~s----s~~~iq~~al~Wi~efV~i~g~~~l~~~s~il~~iLpc~s~~e~~~i~~~a~~~n~~l~~l~s 324 (675)
T KOG0212|consen 249 DDMINVLVPHLQS----SEPEIQLKALTWIQEFVKIPGRDLLLYLSGILTAILPCLSDTEEMSIKEYAQMVNGLLLKLVS 324 (675)
T ss_pred ccchhhccccccC----CcHHHHHHHHHHHHHHhcCCCcchhhhhhhhhhhcccCCCCCccccHHHHHHHHHHHHHHHHh
Confidence 3456777777766 789999999999999865433333333567777777776654331 22211 2333444
Q ss_pred CchhhHHHhhhCcHHHHHHhhcCCCHHHHHHHHHHHHHhccCcccccccccccchhchHHhhcC--chHHHHHHHHHHHH
Q 036199 496 YAYFISKIVASGALASILNMLDSPNGKFQELAIKILHNLSSDVDIQSHIAPSEFLPKLVPFLKD--ATLAVSCLVILKNM 573 (710)
Q Consensus 496 ~~~nk~~I~~~GaI~~LV~LL~~~~~~~~~~A~~aL~nLs~~~en~~~iv~aG~V~~Lv~lL~~--~~~~~~al~iL~nL 573 (710)
.+..+..|--...|..|...+.++..+++-.++.-+..|-....|..........+.|+.-|+| .++...++.+|+++
T Consensus 325 ~~~~~~~id~~~ii~vl~~~l~~~~~~tri~~L~Wi~~l~~~~p~ql~~h~~~if~tLL~tLsd~sd~vvl~~L~lla~i 404 (675)
T KOG0212|consen 325 SERLKEEIDYGSIIEVLTKYLSDDREETRIAVLNWIILLYHKAPGQLLVHNDSIFLTLLKTLSDRSDEVVLLALSLLASI 404 (675)
T ss_pred hhhhccccchHHHHHHHHHHhhcchHHHHHHHHHHHHHHHhhCcchhhhhccHHHHHHHHhhcCchhHHHHHHHHHHHHH
Confidence 4443433322335777888888889999999999998888888888888888999999999976 46799999999999
Q ss_pred hcCcchHHHHHhhcCChHHHHHHhhcCCHHHHHHHHHHHHHHhc
Q 036199 574 CNTEHARVCVVETSGCLPSVAELLEIGSEEDQEHAVAILLCLCS 617 (710)
Q Consensus 574 a~~~e~r~~i~~~~g~I~~Lv~lL~~~s~~~ke~A~~aL~~Lc~ 617 (710)
|..++...- . ..+..|+++......-....+.-+...||.
T Consensus 405 ~~s~~~~~~-~---~fl~sLL~~f~e~~~~l~~Rg~lIIRqlC~ 444 (675)
T KOG0212|consen 405 CSSSNSPNL-R---KFLLSLLEMFKEDTKLLEVRGNLIIRQLCL 444 (675)
T ss_pred hcCcccccH-H---HHHHHHHHHHhhhhHHHHhhhhHHHHHHHH
Confidence 997765522 1 124445555555444456667777777775
|
|
| >PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function | Back alignment and domain information |
|---|
Probab=94.88 E-value=0.085 Score=52.61 Aligned_cols=123 Identities=16% Similarity=0.169 Sum_probs=87.4
Q ss_pred CCCHHHHHHHHHHHHHhccCccccccccc----------------ccchhchHHhhcC--------chHHHHHHHHHHHH
Q 036199 518 SPNGKFQELAIKILHNLSSDVDIQSHIAP----------------SEFLPKLVPFLKD--------ATLAVSCLVILKNM 573 (710)
Q Consensus 518 ~~~~~~~~~A~~aL~nLs~~~en~~~iv~----------------aG~V~~Lv~lL~~--------~~~~~~al~iL~nL 573 (710)
+.+......++..|.||+..++.+..+.+ ..++..|++.+.. .+-.+....+|.|+
T Consensus 6 ~~~~~~adl~~MLLsNlT~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl~Nl 85 (192)
T PF04063_consen 6 DPKSPLADLACMLLSNLTRSDSGCEKLLQLKRESSSQAPKEVSLSGFYLDKLLDLFVKGADPSYNKKDNYDYLASVLANL 85 (192)
T ss_pred CCCcchHHHHHHHHHHhccchHHHHHHHhcccccccccccccchhHHHHHHHHHHHHcCCcccCCCCcchhHHHHHHHHh
Confidence 33444566788888899887777764432 2366777777733 23478889999999
Q ss_pred hcCcchHHHHHhhc-CC--hHHHHHHhhcCCHHHHHHHHHHHHHHhcCChHHHHHHHh--CCchHHHHHHhh
Q 036199 574 CNTEHARVCVVETS-GC--LPSVAELLEIGSEEDQEHAVAILLCLCSQRDQYCKLVMN--EGVIPSLVKISV 640 (710)
Q Consensus 574 a~~~e~r~~i~~~~-g~--I~~Lv~lL~~~s~~~ke~A~~aL~~Lc~~~~~~~~~v~~--~G~v~~Lv~L~~ 640 (710)
+..++||..+.+.. +. |..|+-.+.+.|..-+.-+++++.|+|-....+..++-. .+++|.|+.-+.
T Consensus 86 S~~~~gR~~~l~~~~~~~~l~kLl~ft~~~s~iRR~Gva~~IrNccFd~~~H~~LL~~~~~~iLp~LLlPLa 157 (192)
T PF04063_consen 86 SQLPEGRQFFLDPQRYDGPLQKLLPFTEHKSVIRRGGVAGTIRNCCFDTDSHEWLLSDDEVDILPYLLLPLA 157 (192)
T ss_pred cCCHHHHHHHhCchhhhhHHHHHHHHhccCcHHHHHHHHHHHHHhhccHhHHHHhcCchhhhhHHHHHhhcc
Confidence 99999999998643 33 567777777788888999999999988777444333333 366777755544
|
It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO). |
| >KOG3039 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.85 E-value=0.019 Score=57.67 Aligned_cols=54 Identities=15% Similarity=0.270 Sum_probs=46.7
Q ss_pred CcccccCCccccCCce----ecCCCCccchhhHHHHhhhCCCCCCCCCCccCCCCCccc
Q 036199 267 EVFKCPLSLRLMYDPV----VIESGQTFERMWIQKWFEEGNHTCPKTKMKLVCQSLTPN 321 (710)
Q Consensus 267 ~~f~CPI~~~~m~DPV----~~~~G~ty~r~~I~~w~~~g~~~cP~t~~~l~~~~l~pN 321 (710)
..|.||+|.+.+.+-+ .-+|||.++..|.++.+. +...||+|+.++...++++-
T Consensus 220 ~ryiCpvtrd~LtNt~~ca~Lr~sg~Vv~~ecvEklir-~D~v~pv~d~plkdrdiI~L 277 (303)
T KOG3039|consen 220 KRYICPVTRDTLTNTTPCAVLRPSGHVVTKECVEKLIR-KDMVDPVTDKPLKDRDIIGL 277 (303)
T ss_pred cceecccchhhhcCccceEEeccCCcEeeHHHHHHhcc-ccccccCCCCcCcccceEee
Confidence 5699999999998864 349999999999999987 56689999999999888773
|
|
| >KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=94.84 E-value=0.46 Score=54.19 Aligned_cols=226 Identities=16% Similarity=0.167 Sum_probs=141.3
Q ss_pred ccCCcHHHHHHHhhccccCCCHHHHHHHHHHHHHHh---ccCCCCCccccccchHHHHHHhccC--cHHHHHHHHHHHhc
Q 036199 420 SSTNFVEPLIRFLRDARDLHDSRAQRIGCRLLLAFV---SKNRSGIPYLNEDLFSLLASFLHSA--AATEETLAILVALS 494 (710)
Q Consensus 420 ~~~G~I~~LV~lL~s~~~~~d~~~q~~A~~~L~nL~---~~~~~k~~i~~~gaI~~LV~lL~s~--~~~~~Aa~~L~~Ls 494 (710)
.+++.++.+..+|.+- .+....++..|..+...+. .....|. .+|.++.-+... .+...++..|..++
T Consensus 210 ~EPyiv~~lp~il~~~-~d~~~~Vr~Aa~~a~kai~~~~~~~aVK~------llpsll~~l~~~kWrtK~aslellg~m~ 282 (569)
T KOG1242|consen 210 FEPYIVPILPSILTNF-GDKINKVREAAVEAAKAIMRCLSAYAVKL------LLPSLLGSLLEAKWRTKMASLELLGAMA 282 (569)
T ss_pred CCchHHhhHHHHHHHh-hccchhhhHHHHHHHHHHHHhcCcchhhH------hhhhhHHHHHHHhhhhHHHHHHHHHHHH
Confidence 5677888888888653 2245566666655555542 2222222 233333333222 12257777888777
Q ss_pred cCchhhHHHhhhCcHHHHHHhhcCCCHHHHHHHHHHHHHhccCcccccccccccchhchHHhhcCch-HHHHHHHHHHHH
Q 036199 495 SYAYFISKIVASGALASILNMLDSPNGKFQELAIKILHNLSSDVDIQSHIAPSEFLPKLVPFLKDAT-LAVSCLVILKNM 573 (710)
Q Consensus 495 ~~~~nk~~I~~~GaI~~LV~LL~~~~~~~~~~A~~aL~nLs~~~en~~~iv~aG~V~~Lv~lL~~~~-~~~~al~iL~nL 573 (710)
....-......+.+||.|.+.|.+-.+++++.+..+|.+++.--+|..- .-.+|.|++.+.++. -+..|+..|..-
T Consensus 283 ~~ap~qLs~~lp~iiP~lsevl~DT~~evr~a~~~~l~~~~svidN~dI---~~~ip~Lld~l~dp~~~~~e~~~~L~~t 359 (569)
T KOG1242|consen 283 DCAPKQLSLCLPDLIPVLSEVLWDTKPEVRKAGIETLLKFGSVIDNPDI---QKIIPTLLDALADPSCYTPECLDSLGAT 359 (569)
T ss_pred HhchHHHHHHHhHhhHHHHHHHccCCHHHHHHHHHHHHHHHHhhccHHH---HHHHHHHHHHhcCcccchHHHHHhhcce
Confidence 6665555666789999999999999999999999999999986666541 235788888888876 456665554432
Q ss_pred hcCcchHHHHHhhcCChHHHHHHhhc----CCHHHHHHHHHHHHHHhcCChHHHHHH-HhCCchHHHHHHhhcCCHHHHH
Q 036199 574 CNTEHARVCVVETSGCLPSVAELLEI----GSEEDQEHAVAILLCLCSQRDQYCKLV-MNEGVIPSLVKISVYGNDKAKV 648 (710)
Q Consensus 574 a~~~e~r~~i~~~~g~I~~Lv~lL~~----~s~~~ke~A~~aL~~Lc~~~~~~~~~v-~~~G~v~~Lv~L~~~gt~~~k~ 648 (710)
.-.. .++ +-.+..++-+|.. .+...+..++.+..|+|..-++...+. .=.-.+|-|-..+.+.-|.+|.
T Consensus 360 tFV~-----~V~-~psLalmvpiL~R~l~eRst~~kr~t~~IidNm~~LveDp~~lapfl~~Llp~lk~~~~d~~PEvR~ 433 (569)
T KOG1242|consen 360 TFVA-----EVD-APSLALMVPILKRGLAERSTSIKRKTAIIIDNMCKLVEDPKDLAPFLPSLLPGLKENLDDAVPEVRA 433 (569)
T ss_pred eeee-----eec-chhHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHhhcCHHHHhhhHHHHhhHHHHHhcCCChhHHH
Confidence 2211 122 2345555555554 466778899999999998662211111 1122455565566666899998
Q ss_pred HHHHHH-HHhhhcc
Q 036199 649 SALELR-RLLRDVA 661 (710)
Q Consensus 649 kA~~LL-~~l~~~~ 661 (710)
-|...| .++++..
T Consensus 434 vaarAL~~l~e~~g 447 (569)
T KOG1242|consen 434 VAARALGALLERLG 447 (569)
T ss_pred HHHHHHHHHHHHHH
Confidence 888888 4444443
|
|
| >KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=94.78 E-value=0.012 Score=64.79 Aligned_cols=49 Identities=24% Similarity=0.391 Sum_probs=41.9
Q ss_pred CcccccCCccccCCceecCCCCccchhhHHHHhh----hCCCCCCCCCCccCC
Q 036199 267 EVFKCPLSLRLMYDPVVIESGQTFERMWIQKWFE----EGNHTCPKTKMKLVC 315 (710)
Q Consensus 267 ~~f~CPI~~~~m~DPV~~~~G~ty~r~~I~~w~~----~g~~~cP~t~~~l~~ 315 (710)
.+-.|-+|.+.-.||+...|.|+|||-||.++.. ..+-|||.|...|+-
T Consensus 535 ~~~~C~lc~d~aed~i~s~ChH~FCrlCi~eyv~~f~~~~nvtCP~C~i~Lsi 587 (791)
T KOG1002|consen 535 GEVECGLCHDPAEDYIESSCHHKFCRLCIKEYVESFMENNNVTCPVCHIGLSI 587 (791)
T ss_pred CceeecccCChhhhhHhhhhhHHHHHHHHHHHHHhhhcccCCCCccccccccc
Confidence 4578999999999999999999999999999854 235789999877653
|
|
| >KOG0212 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.77 E-value=0.6 Score=52.73 Aligned_cols=269 Identities=14% Similarity=0.089 Sum_probs=167.3
Q ss_pred hhhcCCCHHHHHHHHHHHHHHHccCcccch-hcccCCcHHHHHHHhhccccCCCHHHHHHHHHHHHHHhccCCCCCcccc
Q 036199 388 SRLTELNWDCQCKVIEDYETRLEHDNQVSH-SLSSTNFVEPLIRFLRDARDLHDSRAQRIGCRLLLAFVSKNRSGIPYLN 466 (710)
Q Consensus 388 ~~L~s~~~e~q~~Al~~L~~Lak~~~~~r~-~I~~~G~I~~LV~lL~s~~~~~d~~~q~~A~~~L~nL~~~~~~k~~i~~ 466 (710)
.++...+......+++-+-.+.++-...+. .+.-.++||.|-+-+.. .++.++..-+..|..+-+-..-...-.-
T Consensus 131 ~klsaDsd~~V~~~aeLLdRLikdIVte~~~tFsL~~~ipLL~eriy~----~n~~tR~flv~Wl~~Lds~P~~~m~~yl 206 (675)
T KOG0212|consen 131 CKLSADSDQNVRGGAELLDRLIKDIVTESASTFSLPEFIPLLRERIYV----INPMTRQFLVSWLYVLDSVPDLEMISYL 206 (675)
T ss_pred HHHhcCCccccccHHHHHHHHHHHhccccccccCHHHHHHHHHHHHhc----CCchHHHHHHHHHHHHhcCCcHHHHhcc
Confidence 344444433444555555555554322222 22223444444444433 5778887777777777443332222224
Q ss_pred ccchHHHHHHhccCcHH--HHHHHHHHHhccCchhhHHHhh-hCcHHHHHHhhcCCCHHHHHHHHHHHHHhccCcccccc
Q 036199 467 EDLFSLLASFLHSAAAT--EETLAILVALSSYAYFISKIVA-SGALASILNMLDSPNGKFQELAIKILHNLSSDVDIQSH 543 (710)
Q Consensus 467 ~gaI~~LV~lL~s~~~~--~~Aa~~L~~Ls~~~~nk~~I~~-~GaI~~LV~LL~~~~~~~~~~A~~aL~nLs~~~en~~~ 543 (710)
...++.|..+|..++.. ..+-.+|.++-..=.++....+ ...++.||.-+.+..+..+..|+.-|.....-..+...
T Consensus 207 ~~~ldGLf~~LsD~s~eVr~~~~t~l~~fL~eI~s~P~s~d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g~~~l 286 (675)
T KOG0212|consen 207 PSLLDGLFNMLSDSSDEVRTLTDTLLSEFLAEIRSSPSSMDYDDMINVLVPHLQSSEPEIQLKALTWIQEFVKIPGRDLL 286 (675)
T ss_pred hHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcCccccCcccchhhccccccCCcHHHHHHHHHHHHHHhcCCCcchh
Confidence 56788889999877653 2333333322211112222222 35688999999999999999999999988877766666
Q ss_pred cccccchhchHHhhcCc-h--HHHHHH---HHHHHHhcCcchHHHHHhhcCChHHHHHHhhcCCHHHHHHHHHHHHHHhc
Q 036199 544 IAPSEFLPKLVPFLKDA-T--LAVSCL---VILKNMCNTEHARVCVVETSGCLPSVAELLEIGSEEDQEHAVAILLCLCS 617 (710)
Q Consensus 544 iv~aG~V~~Lv~lL~~~-~--~~~~al---~iL~nLa~~~e~r~~i~~~~g~I~~Lv~lL~~~s~~~ke~A~~aL~~Lc~ 617 (710)
..-+|++..+++.+.+. . +.+.+. ..|..+.+.+.....+-- ...|..|.+.+.....++|-.++.-+..|-.
T Consensus 287 ~~~s~il~~iLpc~s~~e~~~i~~~a~~~n~~l~~l~s~~~~~~~id~-~~ii~vl~~~l~~~~~~tri~~L~Wi~~l~~ 365 (675)
T KOG0212|consen 287 LYLSGILTAILPCLSDTEEMSIKEYAQMVNGLLLKLVSSERLKEEIDY-GSIIEVLTKYLSDDREETRIAVLNWIILLYH 365 (675)
T ss_pred hhhhhhhhhcccCCCCCccccHHHHHHHHHHHHHHHHhhhhhccccch-HHHHHHHHHHhhcchHHHHHHHHHHHHHHHh
Confidence 66788888888888653 2 233222 234445555555544322 3457788888888888888888877777665
Q ss_pred CChHHHHHHHhCCchHHHHHHhhcCCHHHHHHHHHHHHHhhhccC
Q 036199 618 QRDQYCKLVMNEGVIPSLVKISVYGNDKAKVSALELRRLLRDVAY 662 (710)
Q Consensus 618 ~~~~~~~~v~~~G~v~~Lv~L~~~gt~~~k~kA~~LL~~l~~~~~ 662 (710)
.. .+...+....+.+.|+.-+.+.++.+-..+..++..+....+
T Consensus 366 ~~-p~ql~~h~~~if~tLL~tLsd~sd~vvl~~L~lla~i~~s~~ 409 (675)
T KOG0212|consen 366 KA-PGQLLVHNDSIFLTLLKTLSDRSDEVVLLALSLLASICSSSN 409 (675)
T ss_pred hC-cchhhhhccHHHHHHHHhhcCchhHHHHHHHHHHHHHhcCcc
Confidence 55 344556667788888888889999999999999887765543
|
|
| >COG1413 FOG: HEAT repeat [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=94.41 E-value=3.2 Score=44.78 Aligned_cols=175 Identities=18% Similarity=0.172 Sum_probs=113.5
Q ss_pred hhcCCCHHHHHHHHHHHHHHHccCcccchhcccCCcHHHHHHHhhccccCCCHHHHHHHHHHHHHHhccCCCCCcccccc
Q 036199 389 RLTELNWDCQCKVIEDYETRLEHDNQVSHSLSSTNFVEPLIRFLRDARDLHDSRAQRIGCRLLLAFVSKNRSGIPYLNED 468 (710)
Q Consensus 389 ~L~s~~~e~q~~Al~~L~~Lak~~~~~r~~I~~~G~I~~LV~lL~s~~~~~d~~~q~~A~~~L~nL~~~~~~k~~i~~~g 468 (710)
.+.+.++..+..|+..+..+ ...-+++.+..+|.+ .+..++..|+.+|..+ -...
T Consensus 51 ~l~~~~~~vr~~aa~~l~~~-----------~~~~av~~l~~~l~d----~~~~vr~~a~~aLg~~----------~~~~ 105 (335)
T COG1413 51 LLEDEDLLVRLSAAVALGEL-----------GSEEAVPLLRELLSD----EDPRVRDAAADALGEL----------GDPE 105 (335)
T ss_pred HHcCCCHHHHHHHHHHHhhh-----------chHHHHHHHHHHhcC----CCHHHHHHHHHHHHcc----------CChh
Confidence 34444556666665553322 234578889999987 6788999999977765 3456
Q ss_pred chHHHHHHhcc-CcH--HHHHHHHHHHhccCchhhHHHhhhCcHHHHHHhhcCCCHH------------HHHHHHHHHHH
Q 036199 469 LFSLLASFLHS-AAA--TEETLAILVALSSYAYFISKIVASGALASILNMLDSPNGK------------FQELAIKILHN 533 (710)
Q Consensus 469 aI~~LV~lL~s-~~~--~~~Aa~~L~~Ls~~~~nk~~I~~~GaI~~LV~LL~~~~~~------------~~~~A~~aL~n 533 (710)
+++.|+..|.. ++. +..|+.+|..+- ...++.+|+.++.+.... .+..++.+|..
T Consensus 106 a~~~li~~l~~d~~~~vR~~aa~aL~~~~----------~~~a~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~a~~~l~~ 175 (335)
T COG1413 106 AVPPLVELLENDENEGVRAAAARALGKLG----------DERALDPLLEALQDEDSGSAAAALDAALLDVRAAAAEALGE 175 (335)
T ss_pred HHHHHHHHHHcCCcHhHHHHHHHHHHhcC----------chhhhHHHHHHhccchhhhhhhhccchHHHHHHHHHHHHHH
Confidence 88999999984 554 357777776543 344588899998776532 33334444433
Q ss_pred hccCcccccccccccchhchHHhhcCc--hHHHHHHHHHHHHhcCcchHHHHHhhcCChHHHHHHhhcCCHHHHHHHHHH
Q 036199 534 LSSDVDIQSHIAPSEFLPKLVPFLKDA--TLAVSCLVILKNMCNTEHARVCVVETSGCLPSVAELLEIGSEEDQEHAVAI 611 (710)
Q Consensus 534 Ls~~~en~~~iv~aG~V~~Lv~lL~~~--~~~~~al~iL~nLa~~~e~r~~i~~~~g~I~~Lv~lL~~~s~~~ke~A~~a 611 (710)
+- ....++.|..++.+. .++..|...|..+.... ....+.++..+...+...+..++.+
T Consensus 176 ~~----------~~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~---------~~~~~~l~~~~~~~~~~vr~~~~~~ 236 (335)
T COG1413 176 LG----------DPEAIPLLIELLEDEDADVRRAAASALGQLGSEN---------VEAADLLVKALSDESLEVRKAALLA 236 (335)
T ss_pred cC----------ChhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch---------hhHHHHHHHHhcCCCHHHHHHHHHH
Confidence 32 445678888888664 46777777777776543 1345677777777788887777777
Q ss_pred HHHHhc
Q 036199 612 LLCLCS 617 (710)
Q Consensus 612 L~~Lc~ 617 (710)
|-.+-.
T Consensus 237 l~~~~~ 242 (335)
T COG1413 237 LGEIGD 242 (335)
T ss_pred hcccCc
Confidence 655433
|
|
| >COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.27 E-value=0.017 Score=56.06 Aligned_cols=44 Identities=20% Similarity=0.403 Sum_probs=38.3
Q ss_pred ccccCCccccCCceecCCCCccchhhHHHHhhhCCCCCCCCCCcc
Q 036199 269 FKCPLSLRLMYDPVVIESGQTFERMWIQKWFEEGNHTCPKTKMKL 313 (710)
Q Consensus 269 f~CPI~~~~m~DPV~~~~G~ty~r~~I~~w~~~g~~~cP~t~~~l 313 (710)
|.|-||.+-++.||++.|||.||-.|.-+-+.. .++|-+|+...
T Consensus 197 F~C~iCKkdy~spvvt~CGH~FC~~Cai~~y~k-g~~C~~Cgk~t 240 (259)
T COG5152 197 FLCGICKKDYESPVVTECGHSFCSLCAIRKYQK-GDECGVCGKAT 240 (259)
T ss_pred eeehhchhhccchhhhhcchhHHHHHHHHHhcc-CCcceecchhh
Confidence 999999999999999999999999997777765 45799997653
|
|
| >KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.26 E-value=0.72 Score=55.30 Aligned_cols=134 Identities=20% Similarity=0.277 Sum_probs=103.9
Q ss_pred HHHHHHHHHHHHhcc-Cccccccccc----ccchhchHHhh---cCchHHHHHHHHHHHHhcCcchHHHHHhhcCChHHH
Q 036199 522 KFQELAIKILHNLSS-DVDIQSHIAP----SEFLPKLVPFL---KDATLAVSCLVILKNMCNTEHARVCVVETSGCLPSV 593 (710)
Q Consensus 522 ~~~~~A~~aL~nLs~-~~en~~~iv~----aG~V~~Lv~lL---~~~~~~~~al~iL~nLa~~~e~r~~i~~~~g~I~~L 593 (710)
.-...++.||.||-. +++-..-.-. -|-.+.+...| .++.++..|+.++..+..+.++-..++. .|.+..|
T Consensus 1740 ~~v~m~LtAL~Nli~~nPdlasvfgSe~~lig~F~l~~~~lr~~~~~~iq~LaL~Vi~~~Tan~~Cv~~~a~-~~vL~~L 1818 (2235)
T KOG1789|consen 1740 TKVLMTLTALANLVSANPDLASVFGSEILLIGNFPLLITYLRCRKHPKLQILALQVILLATANKECVTDLAT-CNVLTTL 1818 (2235)
T ss_pred HHHHHHHHHHHHHHhhCcchhhhccchhhhhcccHHHHHHHHHcCCchHHHHHHHHHHHHhcccHHHHHHHh-hhHHHHH
Confidence 356788999999976 5644332221 35666666666 4577999999999999999999999998 6778888
Q ss_pred HHHhhcCCHHHHHHHHHHHHHHhcCChHHHHHHHhCCchHHHHHHhhc-CCHHHHHHHHHHHHHhh
Q 036199 594 AELLEIGSEEDQEHAVAILLCLCSQRDQYCKLVMNEGVIPSLVKISVY-GNDKAKVSALELRRLLR 658 (710)
Q Consensus 594 v~lL~~~s~~~ke~A~~aL~~Lc~~~~~~~~~v~~~G~v~~Lv~L~~~-gt~~~k~kA~~LL~~l~ 658 (710)
+.+|. .-|..++-++.+|+.|++.. +....+++.|++..+.++.-+ .++..|..|..||.-|.
T Consensus 1819 L~lLH-S~PS~R~~vL~vLYAL~S~~-~i~keA~~hg~l~yil~~~c~~~~~QqRAqaAeLlaKl~ 1882 (2235)
T KOG1789|consen 1819 LTLLH-SQPSMRARVLDVLYALSSNG-QIGKEALEHGGLMYILSILCLTNSDQQRAQAAELLAKLQ 1882 (2235)
T ss_pred HHHHh-cChHHHHHHHHHHHHHhcCc-HHHHHHHhcCchhhhhHHHhccCcHHHHHHHHHHHHHhh
Confidence 88776 46788999999999999988 778888899998888777544 45677888888887654
|
|
| >PF11841 DUF3361: Domain of unknown function (DUF3361) | Back alignment and domain information |
|---|
Probab=94.14 E-value=0.39 Score=46.21 Aligned_cols=117 Identities=14% Similarity=0.200 Sum_probs=95.0
Q ss_pred ccccccchhchHHhhcCc--------hHHHHHHHHHHHHhcCcchHHHHHhhcCChHHHHHHhhcC--CHHHHHHHHHHH
Q 036199 543 HIAPSEFLPKLVPFLKDA--------TLAVSCLVILKNMCNTEHARVCVVETSGCLPSVAELLEIG--SEEDQEHAVAIL 612 (710)
Q Consensus 543 ~iv~aG~V~~Lv~lL~~~--------~~~~~al~iL~nLa~~~e~r~~i~~~~g~I~~Lv~lL~~~--s~~~ke~A~~aL 612 (710)
..++.||+..|++++.++ ++...++.++..|-.+.-.-..... ...|..++..+... ++.+.+.|.++|
T Consensus 6 EFI~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg~vsWd~l~-~~FI~Kia~~Vn~~~~d~~i~q~sLaIL 84 (160)
T PF11841_consen 6 EFISRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHGIVSWDTLS-DSFIKKIASYVNSSAMDASILQRSLAIL 84 (160)
T ss_pred HHHhccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcCcCchhhcc-HHHHHHHHHHHccccccchHHHHHHHHH
Confidence 456789999999999542 4567788888888887654455665 56788888888753 688899999999
Q ss_pred HHHhcCChHHHHHHHhCCchHHHHHHhhcCCHHHHHHHHHHHH-Hhhhc
Q 036199 613 LCLCSQRDQYCKLVMNEGVIPSLVKISVYGNDKAKVSALELRR-LLRDV 660 (710)
Q Consensus 613 ~~Lc~~~~~~~~~v~~~G~v~~Lv~L~~~gt~~~k~kA~~LL~-~l~~~ 660 (710)
-++..+++.....+.++=-++.|+..++..++..+.+|.+|+. +|.+.
T Consensus 85 Es~Vl~S~~ly~~V~~evt~~~Li~hLq~~~~~iq~naiaLinAL~~kA 133 (160)
T PF11841_consen 85 ESIVLNSPKLYQLVEQEVTLESLIRHLQVSNQEIQTNAIALINALFLKA 133 (160)
T ss_pred HHHHhCCHHHHHHHhccCCHHHHHHHHHcCCHHHHHHHHHHHHHHHhcC
Confidence 9999999777888888778999999999999999999999998 44444
|
|
| >KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.12 E-value=2 Score=45.66 Aligned_cols=242 Identities=13% Similarity=0.108 Sum_probs=158.6
Q ss_pred HHHHHHHHHHHHccCcccchhcccCCcHHHHHHHhhccccCCCHHHHHHHHHHHHHHhccCCCCCccccccchHHHHHHh
Q 036199 398 QCKVIEDYETRLEHDNQVSHSLSSTNFVEPLIRFLRDARDLHDSRAQRIGCRLLLAFVSKNRSGIPYLNEDLFSLLASFL 477 (710)
Q Consensus 398 q~~Al~~L~~Lak~~~~~r~~I~~~G~I~~LV~lL~s~~~~~d~~~q~~A~~~L~nL~~~~~~k~~i~~~gaI~~LV~lL 477 (710)
+..+++-|-.+..-+++.-......|.+..|..-|+.. .|.-+..+.+.....+..-...+..+.+.|.|..+..++
T Consensus 188 RvRVleLIieifSiSpesaneckkSGLldlLeaElkGt---eDtLVianciElvteLaeteHgreflaQeglIdlicnII 264 (524)
T KOG4413|consen 188 RVRVLELIIEIFSISPESANECKKSGLLDLLEAELKGT---EDTLVIANCIELVTELAETEHGREFLAQEGLIDLICNII 264 (524)
T ss_pred HHHHHHHHHHHHhcCHHHHhHhhhhhHHHHHHHHhcCC---cceeehhhHHHHHHHHHHHhhhhhhcchhhHHHHHHHHh
Confidence 44555555566666666666667788888888877642 566777777777788866556677778999999999998
Q ss_pred ccCcHH--H--HHH----HHHHHhccCchhhHHHhh--hCcHHHHHHhhcCCCHHHHHHHHHHHHHhccCcccccccccc
Q 036199 478 HSAAAT--E--ETL----AILVALSSYAYFISKIVA--SGALASILNMLDSPNGKFQELAIKILHNLSSDVDIQSHIAPS 547 (710)
Q Consensus 478 ~s~~~~--~--~Aa----~~L~~Ls~~~~nk~~I~~--~GaI~~LV~LL~~~~~~~~~~A~~aL~nLs~~~en~~~iv~a 547 (710)
...++. + .+. ..+.++...+-.-..|.+ .-+|....+++...|+...+.|+.++..|-++.+.+..+.+.
T Consensus 265 sGadsdPfekfralmgfgkffgkeaimdvseeaicealiiaidgsfEmiEmnDpdaieaAiDalGilGSnteGadlllkT 344 (524)
T KOG4413|consen 265 SGADSDPFEKFRALMGFGKFFGKEAIMDVSEEAICEALIIAIDGSFEMIEMNDPDAIEAAIDALGILGSNTEGADLLLKT 344 (524)
T ss_pred hCCCCCcHHHHHHHHHHHHHhcchHHhhcCHHHHHHHHHHHHHhhHHhhhcCCchHHHHHHHHHHhccCCcchhHHHhcc
Confidence 754431 1 222 222233322222233333 234566667788889999999999999999999998888776
Q ss_pred cc--hhchHHhhcCc---hHHHHHHHHHHHHhcC--------cchHH------HHHhhc------CChHHHHHHhhcCCH
Q 036199 548 EF--LPKLVPFLKDA---TLAVSCLVILKNMCNT--------EHARV------CVVETS------GCLPSVAELLEIGSE 602 (710)
Q Consensus 548 G~--V~~Lv~lL~~~---~~~~~al~iL~nLa~~--------~e~r~------~i~~~~------g~I~~Lv~lL~~~s~ 602 (710)
|- ...|+.-..+. .-++.++.+|.+++.. .+|+. .+.+.. .-...+..+++...+
T Consensus 345 gppaaehllarafdqnahakqeaaihaLaaIagelrlkpeqitDgkaeerlrclifdaaaqstkldPleLFlgilqQpfp 424 (524)
T KOG4413|consen 345 GPPAAEHLLARAFDQNAHAKQEAAIHALAAIAGELRLKPEQITDGKAEERLRCLIFDAAAQSTKLDPLELFLGILQQPFP 424 (524)
T ss_pred CChHHHHHHHHHhcccccchHHHHHHHHHHhhccccCChhhccccHHHHHHHHHHHHHHhhccCCChHHHHHHHHcCCCh
Confidence 63 44444444332 2377778888888761 12222 122110 123455666777899
Q ss_pred HHHHHHHHHHHHHhcCChHHHHHHHhCCchHHHHHHhhcC
Q 036199 603 EDQEHAVAILLCLCSQRDQYCKLVMNEGVIPSLVKISVYG 642 (710)
Q Consensus 603 ~~ke~A~~aL~~Lc~~~~~~~~~v~~~G~v~~Lv~L~~~g 642 (710)
+..-.|..++-.+...+=....++...|.+....+-+...
T Consensus 425 EihcAalktfTAiaaqPWalkeifakeefieiVtDastEh 464 (524)
T KOG4413|consen 425 EIHCAALKTFTAIAAQPWALKEIFAKEEFIEIVTDASTEH 464 (524)
T ss_pred hhHHHHHHHHHHHHcCcHHHHHHhcCccceeeecccchhh
Confidence 9999999999999988855566666788877776654433
|
|
| >KOG4367 consensus Predicted Zn-finger protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.10 E-value=0.018 Score=61.93 Aligned_cols=33 Identities=15% Similarity=0.453 Sum_probs=29.9
Q ss_pred CcccccCCccccCCceecCCCCccchhhHHHHh
Q 036199 267 EVFKCPLSLRLMYDPVVIESGQTFERMWIQKWF 299 (710)
Q Consensus 267 ~~f~CPI~~~~m~DPV~~~~G~ty~r~~I~~w~ 299 (710)
+++.||||...++||+|++|||+.||.|-..-+
T Consensus 3 eelkc~vc~~f~~epiil~c~h~lc~~ca~~~~ 35 (699)
T KOG4367|consen 3 EELKCPVCGSFYREPIILPCSHNLCQACARNIL 35 (699)
T ss_pred ccccCceehhhccCceEeecccHHHHHHHHhhc
Confidence 679999999999999999999999999976544
|
|
| >KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.10 E-value=0.66 Score=47.37 Aligned_cols=172 Identities=20% Similarity=0.220 Sum_probs=118.4
Q ss_pred HHHHHHHHHHHhccCCCCCccccccchHHHHHHhccCcH----H---HHHHHHHHHhccCch--hhHHHhhhCcHHHHHH
Q 036199 444 QRIGCRLLLAFVSKNRSGIPYLNEDLFSLLASFLHSAAA----T---EETLAILVALSSYAY--FISKIVASGALASILN 514 (710)
Q Consensus 444 q~~A~~~L~nL~~~~~~k~~i~~~gaI~~LV~lL~s~~~----~---~~Aa~~L~~Ls~~~~--nk~~I~~~GaI~~LV~ 514 (710)
..+|..+|..++++.+.|..++++-.=--|-.+|+.+.. + -.+.+++..|..+++ .-..+...+.||..++
T Consensus 96 VcnaL~LlQcvASHpdTr~~FL~A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPlCLr 175 (293)
T KOG3036|consen 96 VCNALALLQCVASHPDTRRAFLRAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPLCLR 175 (293)
T ss_pred HHHHHHHHHHHhcCcchHHHHHHccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHHHHH
Confidence 457777777789999888888777655555666664432 1 278899998886543 3334447899999999
Q ss_pred hhcCCCHHHHHHHHHHHHHhccCccccccccc-cc---ch----hchHHhh---cCchHHHHHHHHHHHHhcCcchHHHH
Q 036199 515 MLDSPNGKFQELAIKILHNLSSDVDIQSHIAP-SE---FL----PKLVPFL---KDATLAVSCLVILKNMCNTEHARVCV 583 (710)
Q Consensus 515 LL~~~~~~~~~~A~~aL~nLs~~~en~~~iv~-aG---~V----~~Lv~lL---~~~~~~~~al~iL~nLa~~~e~r~~i 583 (710)
.+..|+...+.-|+-++..+-.++.+-..+.+ +. +| ..++--| .++.+...++.+.-+|+.++..|.++
T Consensus 176 ime~GSelSKtvA~fIlqKIlldD~GL~YiCqt~eRF~av~~~L~kmv~~l~~~ps~RllKhviRcYlrLsdnprar~aL 255 (293)
T KOG3036|consen 176 IMESGSELSKTVATFILQKILLDDVGLYYICQTAERFSAVALVLGKMVFQLVSMPSPRLLKHVIRCYLRLSDNPRARAAL 255 (293)
T ss_pred HHhcccHHHHHHHHHHHHHHhhccccHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 99999999999999999998888776655543 22 22 2222222 23467888999999999999999888
Q ss_pred HhhcCChHHH-----HHHhhcCCHHHHHHHHHHHHHHhcC
Q 036199 584 VETSGCLPSV-----AELLEIGSEEDQEHAVAILLCLCSQ 618 (710)
Q Consensus 584 ~~~~g~I~~L-----v~lL~~~s~~~ke~A~~aL~~Lc~~ 618 (710)
.. +.|-. ...+-..++..+..-...|.++|.+
T Consensus 256 ~~---clPd~Lrd~tfs~~l~~D~~~k~~l~~ll~~l~~~ 292 (293)
T KOG3036|consen 256 RS---CLPDQLRDGTFSLLLKDDPETKQWLQQLLKNLCTG 292 (293)
T ss_pred Hh---hCcchhccchHHHHHhcChhHHHHHHHHHHHhccC
Confidence 65 23321 1223335667777766666776643
|
|
| >KOG2979 consensus Protein involved in DNA repair [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.06 E-value=0.043 Score=55.91 Aligned_cols=65 Identities=17% Similarity=0.290 Sum_probs=47.1
Q ss_pred CCcccccCCccccCCceec-CCCCccchhhHHHHhhh-CCCCCCCCCCc----cCCCCCcccHHHHHHHHH
Q 036199 266 PEVFKCPLSLRLMYDPVVI-ESGQTFERMWIQKWFEE-GNHTCPKTKMK----LVCQSLTPNTAMKDLISK 330 (710)
Q Consensus 266 p~~f~CPI~~~~m~DPV~~-~~G~ty~r~~I~~w~~~-g~~~cP~t~~~----l~~~~l~pN~~l~~~i~~ 330 (710)
--+++|||+......||+- .|||.|+|..|+..+.. -...||+-+-. +.+..+.+...+++-|++
T Consensus 174 ~fs~rdPis~~~I~nPviSkkC~HvydrDsI~~~l~~~~~i~CPv~gC~~~~~~~~~~l~~d~el~~kIr~ 244 (262)
T KOG2979|consen 174 VFSNRDPISKKPIVNPVISKKCGHVYDRDSIMQILCDEITIRCPVLGCENPYYIQPGHLDEDKELQQKIRQ 244 (262)
T ss_pred hhcccCchhhhhhhchhhhcCcCcchhhhhHHHHhccCceeecccccCCccccccccccCchHHHHHHHHH
Confidence 4578999999999999985 99999999999999863 23459987654 122334454455555544
|
|
| >KOG2734 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.00 E-value=0.91 Score=49.95 Aligned_cols=173 Identities=18% Similarity=0.205 Sum_probs=124.2
Q ss_pred HHHHHHHHhccCchhhHHHhhhCcHHHHHHhhcCCCHHHHHHHHHHHHHhccC---cccc-------cccccccchhchH
Q 036199 485 ETLAILVALSSYAYFISKIVASGALASILNMLDSPNGKFQELAIKILHNLSSD---VDIQ-------SHIAPSEFLPKLV 554 (710)
Q Consensus 485 ~Aa~~L~~Ls~~~~nk~~I~~~GaI~~LV~LL~~~~~~~~~~A~~aL~nLs~~---~en~-------~~iv~aG~V~~Lv 554 (710)
....-+..++..++--..+++..+++.|+.||...+.++.-+.+..|..|.-. +++- ..+++.++++.|+
T Consensus 103 d~IQ~mhvlAt~PdLYp~lveln~V~slL~LLgHeNtDI~iavvdLLqELTD~Dv~~es~egAevLidaLvdg~vlaLLv 182 (536)
T KOG2734|consen 103 DIIQEMHVLATMPDLYPILVELNAVQSLLELLGHENTDIAIAVVDLLQELTDEDVLYESEEGAEVLIDALVDGQVLALLV 182 (536)
T ss_pred HHHHHHHhhhcChHHHHHHHHhccHHHHHHHhcCCCchhHHHHHHHHHHhhhhcccccccccHHHHHHHHHhccHHHHHH
Confidence 45666677788888888889999999999999999999999999999998741 2221 3467788999998
Q ss_pred Hhhc--C------chHHHHHHHHHHHHhcC-cchHHHHHhhcCChHHHHHHhhc--CCHHHHHHHHHHHHHHhcCChHHH
Q 036199 555 PFLK--D------ATLAVSCLVILKNMCNT-EHARVCVVETSGCLPSVAELLEI--GSEEDQEHAVAILLCLCSQRDQYC 623 (710)
Q Consensus 555 ~lL~--~------~~~~~~al~iL~nLa~~-~e~r~~i~~~~g~I~~Lv~lL~~--~s~~~ke~A~~aL~~Lc~~~~~~~ 623 (710)
+-+. + ..-....++++.|+... ++....+++ .|.+..|+.-+.. .-...+.+|..+|.-+-.++.+++
T Consensus 183 qnveRLdEsvkeea~gv~~~L~vveNlv~~r~~~~~~~~e-~~ll~WLL~rl~~k~~f~aNk~YasEiLaillq~s~e~~ 261 (536)
T KOG2734|consen 183 QNVERLDESVKEEADGVHNTLAVVENLVEVRPAICTEIVE-QGLLSWLLKRLKGKAAFDANKQYASEILAILLQNSDENR 261 (536)
T ss_pred HHHHHhhhcchhhhhhhHHHHHHHHHHHhccHHHHHHHHH-hhHHHHHHHHHhcccCcchhHHHHHHHHHHHhccCchhh
Confidence 8872 1 23477789999999984 555666777 5888888875553 345668899999988888887777
Q ss_pred HHHHhCCchHHHHHHh-----hcC-CHHHHHHHHHHHHHhh
Q 036199 624 KLVMNEGVIPSLVKIS-----VYG-NDKAKVSALELRRLLR 658 (710)
Q Consensus 624 ~~v~~~G~v~~Lv~L~-----~~g-t~~~k~kA~~LL~~l~ 658 (710)
...-.-.++..|++=+ .+. +..-++.-..|...|+
T Consensus 262 ~~~~~l~GiD~lL~~la~yk~~dP~~~~E~EmmeNLFdcLC 302 (536)
T KOG2734|consen 262 KLLGPLDGIDVLLRQLAVYKRHDPATVDEEEMMENLFDCLC 302 (536)
T ss_pred hhhcCcccHHHHHhhcchhhccCCCCcCHHHHHHHHHHHHH
Confidence 7777777777665431 221 2334455555555443
|
|
| >KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=93.93 E-value=1.8 Score=45.93 Aligned_cols=230 Identities=11% Similarity=0.132 Sum_probs=139.4
Q ss_pred HHHHHHHHHHHHHccCcccc----hhcccCCcHHHHHHHhhccccCCCHHHHHHHHHHHHHHhccCCCCCccccccchHH
Q 036199 397 CQCKVIEDYETRLEHDNQVS----HSLSSTNFVEPLIRFLRDARDLHDSRAQRIGCRLLLAFVSKNRSGIPYLNEDLFSL 472 (710)
Q Consensus 397 ~q~~Al~~L~~Lak~~~~~r----~~I~~~G~I~~LV~lL~s~~~~~d~~~q~~A~~~L~nL~~~~~~k~~i~~~gaI~~ 472 (710)
++.-++..+..+.++.+.|- ..++..|.++.++..+.. .|.++-..|...|..++.....-..+.+......
T Consensus 98 VKiLackqigcilEdcDtnaVseillvvNaeilklildcIgg----eddeVAkAAiesikrialfpaaleaiFeSellDd 173 (524)
T KOG4413|consen 98 VKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIGG----EDDEVAKAAIESIKRIALFPAALEAIFESELLDD 173 (524)
T ss_pred hhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHcC----CcHHHHHHHHHHHHHHHhcHHHHHHhcccccCCh
Confidence 33445555666666655442 234678999999999976 6778888888888777543322222333322222
Q ss_pred HH--HHh-ccCc-HHHHHHHHHHHhc-cCchhhHHHhhhCcHHHHHHhhcC-CCHHHHHHHHHHHHHhccCccccccccc
Q 036199 473 LA--SFL-HSAA-ATEETLAILVALS-SYAYFISKIVASGALASILNMLDS-PNGKFQELAIKILHNLSSDVDIQSHIAP 546 (710)
Q Consensus 473 LV--~lL-~s~~-~~~~Aa~~L~~Ls-~~~~nk~~I~~~GaI~~LV~LL~~-~~~~~~~~A~~aL~nLs~~~en~~~iv~ 546 (710)
+- .+- +..+ .+......+..++ ..++.....-.+|.+..|..=|.. .|.-+..+++...+.|...+..+..+.+
T Consensus 174 lhlrnlaakcndiaRvRVleLIieifSiSpesaneckkSGLldlLeaElkGteDtLVianciElvteLaeteHgreflaQ 253 (524)
T KOG4413|consen 174 LHLRNLAAKCNDIARVRVLELIIEIFSISPESANECKKSGLLDLLEAELKGTEDTLVIANCIELVTELAETEHGREFLAQ 253 (524)
T ss_pred HHHhHHHhhhhhHHHHHHHHHHHHHHhcCHHHHhHhhhhhHHHHHHHHhcCCcceeehhhHHHHHHHHHHHhhhhhhcch
Confidence 11 110 1111 1122333333333 344555555568887777766543 5667778889999999998889999999
Q ss_pred ccchhchHHhhcC---chH-HHHHH----HHHHHHhcCcchHHHHHhh-cCChHHHHHHhhcCCHHHHHHHHHHHHHHhc
Q 036199 547 SEFLPKLVPFLKD---ATL-AVSCL----VILKNMCNTEHARVCVVET-SGCLPSVAELLEIGSEEDQEHAVAILLCLCS 617 (710)
Q Consensus 547 aG~V~~Lv~lL~~---~~~-~~~al----~iL~nLa~~~e~r~~i~~~-~g~I~~Lv~lL~~~s~~~ke~A~~aL~~Lc~ 617 (710)
.|.|+.+-.++.- +.. .-.++ ..+.+++--+-.-+++++. .-+|....+++...++..++.|+.+|-.|.+
T Consensus 254 eglIdlicnIIsGadsdPfekfralmgfgkffgkeaimdvseeaicealiiaidgsfEmiEmnDpdaieaAiDalGilGS 333 (524)
T KOG4413|consen 254 EGLIDLICNIISGADSDPFEKFRALMGFGKFFGKEAIMDVSEEAICEALIIAIDGSFEMIEMNDPDAIEAAIDALGILGS 333 (524)
T ss_pred hhHHHHHHHHhhCCCCCcHHHHHHHHHHHHHhcchHHhhcCHHHHHHHHHHHHHhhHHhhhcCCchHHHHHHHHHHhccC
Confidence 9999999998832 222 11223 3334444322222333331 1235566778888999999999999999888
Q ss_pred CChHHHHHHHhCCc
Q 036199 618 QRDQYCKLVMNEGV 631 (710)
Q Consensus 618 ~~~~~~~~v~~~G~ 631 (710)
+. +-.+.+...|-
T Consensus 334 nt-eGadlllkTgp 346 (524)
T KOG4413|consen 334 NT-EGADLLLKTGP 346 (524)
T ss_pred Cc-chhHHHhccCC
Confidence 77 45667777764
|
|
| >KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=93.88 E-value=1.6 Score=49.95 Aligned_cols=217 Identities=15% Similarity=0.094 Sum_probs=129.5
Q ss_pred cchhhcCCCHHHHHHHHHHHHHHHccCcccchhcccCCcHHHHHHHhhccccCCCHHHHHHHHHHHHHHhccCCCCCccc
Q 036199 386 DLSRLTELNWDCQCKVIEDYETRLEHDNQVSHSLSSTNFVEPLIRFLRDARDLHDSRAQRIGCRLLLAFVSKNRSGIPYL 465 (710)
Q Consensus 386 ~L~~L~s~~~e~q~~Al~~L~~Lak~~~~~r~~I~~~G~I~~LV~lL~s~~~~~d~~~q~~A~~~L~nL~~~~~~k~~i~ 465 (710)
+++.+...+...|+.....|..+...... ....-+.+.+.++|.. .+...+..|+..+.-+..+.-. ....
T Consensus 101 ~~~~~~tps~~~q~~~~~~l~~~~~~~~~----~~~~~~l~~l~~ll~~----~~~~~~~~aa~~~ag~v~g~~i-~~~~ 171 (569)
T KOG1242|consen 101 LLEELDTPSKSVQRAVSTCLPPLVVLSKG----LSGEYVLELLLELLTS----TKIAERAGAAYGLAGLVNGLGI-ESLK 171 (569)
T ss_pred HHHhcCCCcHHHHHHHHHHhhhHHHHhhc----cCHHHHHHHHHHHhcc----ccHHHHhhhhHHHHHHHcCcHH-hhhh
Confidence 33666677778887777666554432111 1223456777778875 6677788888888877654321 1223
Q ss_pred cccchHHHHHHhccCcHHHHHHHHHHHhccCchhhHHHhhhCcHHHHHHhhc---CCCHHHHHHHHHHHHHhccCccccc
Q 036199 466 NEDLFSLLASFLHSAAATEETLAILVALSSYAYFISKIVASGALASILNMLD---SPNGKFQELAIKILHNLSSDVDIQS 542 (710)
Q Consensus 466 ~~gaI~~LV~lL~s~~~~~~Aa~~L~~Ls~~~~nk~~I~~~GaI~~LV~LL~---~~~~~~~~~A~~aL~nLs~~~en~~ 542 (710)
+.+.+..|-..+.+.....+--..++.......+-..-.+.+.+|.|..+|. +..+.++..|..+...+-
T Consensus 172 ~~~~l~~l~~ai~dk~~~~~re~~~~a~~~~~~~Lg~~~EPyiv~~lp~il~~~~d~~~~Vr~Aa~~a~kai~------- 244 (569)
T KOG1242|consen 172 EFGFLDNLSKAIIDKKSALNREAALLAFEAAQGNLGPPFEPYIVPILPSILTNFGDKINKVREAAVEAAKAIM------- 244 (569)
T ss_pred hhhHHHHHHHHhcccchhhcHHHHHHHHHHHHHhcCCCCCchHHhhHHHHHHHhhccchhhhHHHHHHHHHHH-------
Confidence 5677777777776554321110111111111111112335666777777663 344555555544443332
Q ss_pred ccccccchhch----HHhhcCchH--HHHHHHHHHHHhcCcchHHHHHhhcCChHHHHHHhhcCCHHHHHHHHHHHHHHh
Q 036199 543 HIAPSEFLPKL----VPFLKDATL--AVSCLVILKNMCNTEHARVCVVETSGCLPSVAELLEIGSEEDQEHAVAILLCLC 616 (710)
Q Consensus 543 ~iv~aG~V~~L----v~lL~~~~~--~~~al~iL~nLa~~~e~r~~i~~~~g~I~~Lv~lL~~~s~~~ke~A~~aL~~Lc 616 (710)
..+.+.+|+.+ +.-+.+..+ ...++.+|..++.+..-.-+..- ...||.|.+.|-...+++|+.+..+|..+|
T Consensus 245 ~~~~~~aVK~llpsll~~l~~~kWrtK~aslellg~m~~~ap~qLs~~l-p~iiP~lsevl~DT~~evr~a~~~~l~~~~ 323 (569)
T KOG1242|consen 245 RCLSAYAVKLLLPSLLGSLLEAKWRTKMASLELLGAMADCAPKQLSLCL-PDLIPVLSEVLWDTKPEVRKAGIETLLKFG 323 (569)
T ss_pred HhcCcchhhHhhhhhHHHHHHHhhhhHHHHHHHHHHHHHhchHHHHHHH-hHhhHHHHHHHccCCHHHHHHHHHHHHHHH
Confidence 12234444443 333333433 56678899999988777777766 689999999999999999999999999998
Q ss_pred cCC
Q 036199 617 SQR 619 (710)
Q Consensus 617 ~~~ 619 (710)
.--
T Consensus 324 svi 326 (569)
T KOG1242|consen 324 SVI 326 (569)
T ss_pred Hhh
Confidence 543
|
|
| >COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=93.64 E-value=2.8 Score=47.60 Aligned_cols=59 Identities=19% Similarity=0.067 Sum_probs=41.3
Q ss_pred CCHHHHHHHHHHHHHHhcCChHHHHHHHhCCchHHHHHHhhcCCHHHHHHHHHHHHHhhhcc
Q 036199 600 GSEEDQEHAVAILLCLCSQRDQYCKLVMNEGVIPSLVKISVYGNDKAKVSALELRRLLRDVA 661 (710)
Q Consensus 600 ~s~~~ke~A~~aL~~Lc~~~~~~~~~v~~~G~v~~Lv~L~~~gt~~~k~kA~~LL~~l~~~~ 661 (710)
.+.-++..|+.+|...+.+-. ..+....+.-.|-..+.+.++.+|+.|.-+|+.++..+
T Consensus 499 EN~ivRsaAv~aLskf~ln~~---d~~~~~sv~~~lkRclnD~DdeVRdrAsf~l~~~~~~d 557 (898)
T COG5240 499 ENNIVRSAAVQALSKFALNIS---DVVSPQSVENALKRCLNDQDDEVRDRASFLLRNMRLSD 557 (898)
T ss_pred hhhHHHHHHHHHHHHhccCcc---ccccHHHHHHHHHHHhhcccHHHHHHHHHHHHhhhhhh
Confidence 466677888888855444331 22233344556777889999999999999999998543
|
|
| >PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division [] | Back alignment and domain information |
|---|
Probab=93.60 E-value=0.11 Score=51.19 Aligned_cols=75 Identities=24% Similarity=0.303 Sum_probs=62.7
Q ss_pred cccccccchhchHHhhc-----------CchHHHHHHHHHHHHhcCcchHHHHHhhcCChHHHHHHhhcCCHHHHHHHHH
Q 036199 542 SHIAPSEFLPKLVPFLK-----------DATLAVSCLVILKNMCNTEHARVCVVETSGCLPSVAELLEIGSEEDQEHAVA 610 (710)
Q Consensus 542 ~~iv~aG~V~~Lv~lL~-----------~~~~~~~al~iL~nLa~~~e~r~~i~~~~g~I~~Lv~lL~~~s~~~ke~A~~ 610 (710)
..+++.||+..|+.+|. +......++.+|..|..+..|...+..+.++|..|+..|.+.+..++..|+.
T Consensus 101 ~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal~n~~~G~~~v~~~~~~v~~i~~~L~s~~~~~r~~~le 180 (187)
T PF06371_consen 101 QEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKALMNTKYGLEAVLSHPDSVNLIALSLDSPNIKTRKLALE 180 (187)
T ss_dssp HHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHHTSSHHHHHHHHCSSSHHHHHHHT--TTSHHHHHHHHH
T ss_pred HHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHHccHHHHHHHHcCcHHHHHHHHHHCCCCHHHHHHHHH
Confidence 35567788888888872 1246788999999999999999999998999999999999999999999999
Q ss_pred HHHHHh
Q 036199 611 ILLCLC 616 (710)
Q Consensus 611 aL~~Lc 616 (710)
+|..+|
T Consensus 181 iL~~lc 186 (187)
T PF06371_consen 181 ILAALC 186 (187)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 999998
|
Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A. |
| >COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=93.57 E-value=0.045 Score=58.08 Aligned_cols=47 Identities=19% Similarity=0.547 Sum_probs=39.1
Q ss_pred CCcccccCCccccCCc-------------eecCCCCccchhhHHHHhhhCCCCCCCCCCcc
Q 036199 266 PEVFKCPLSLRLMYDP-------------VVIESGQTFERMWIQKWFEEGNHTCPKTKMKL 313 (710)
Q Consensus 266 p~~f~CPI~~~~m~DP-------------V~~~~G~ty~r~~I~~w~~~g~~~cP~t~~~l 313 (710)
-.|-.|-||++=|-.| =-++|||.+--+|++-|.++ +.|||.|+.++
T Consensus 285 n~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLpCGHilHl~CLknW~ER-qQTCPICr~p~ 344 (491)
T COG5243 285 NSDRTCTICMDEMFHPDHEPLPRGLDMTPKRLPCGHILHLHCLKNWLER-QQTCPICRRPV 344 (491)
T ss_pred CCCCeEEEecccccCCCCccCcccccCCcccccccceeeHHHHHHHHHh-ccCCCcccCcc
Confidence 3567899999875443 57899999999999999986 66999999884
|
|
| >COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=93.41 E-value=0.057 Score=55.92 Aligned_cols=47 Identities=17% Similarity=0.453 Sum_probs=38.2
Q ss_pred ccccCCcccc--CCce-ecCCCCccchhhHHHHhhhCCCCCCCCCCccCC
Q 036199 269 FKCPLSLRLM--YDPV-VIESGQTFERMWIQKWFEEGNHTCPKTKMKLVC 315 (710)
Q Consensus 269 f~CPI~~~~m--~DPV-~~~~G~ty~r~~I~~w~~~g~~~cP~t~~~l~~ 315 (710)
.-|-||+.=+ .|-+ +++|.|.|-+.||++|+..-...||+|+.++++
T Consensus 324 veCaICms~fiK~d~~~vlPC~H~FH~~Cv~kW~~~y~~~CPvCrt~iPP 373 (374)
T COG5540 324 VECAICMSNFIKNDRLRVLPCDHRFHVGCVDKWLLGYSNKCPVCRTAIPP 373 (374)
T ss_pred ceEEEEhhhhcccceEEEeccCceechhHHHHHHhhhcccCCccCCCCCC
Confidence 5799998754 2444 579999999999999998666789999988765
|
|
| >KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=93.32 E-value=2.2 Score=51.54 Aligned_cols=190 Identities=18% Similarity=0.151 Sum_probs=133.4
Q ss_pred ccccchHHHHHHhccCcHH-HHHHHHHH--HhccCchhhHHHhhhCcHHHHHHhhcCC---CHHHHHHHHHHHHHhccC-
Q 036199 465 LNEDLFSLLASFLHSAAAT-EETLAILV--ALSSYAYFISKIVASGALASILNMLDSP---NGKFQELAIKILHNLSSD- 537 (710)
Q Consensus 465 ~~~gaI~~LV~lL~s~~~~-~~Aa~~L~--~Ls~~~~nk~~I~~~GaI~~LV~LL~~~---~~~~~~~A~~aL~nLs~~- 537 (710)
+.-|++|-++++|.+...+ +-.+..++ -|+.++.....+++.++-...+..|..+ +++-+.-|+-+|..+..+
T Consensus 509 LsVGIFPYVLKLLQS~a~ELrpiLVFIWAKILAvD~SCQ~dLvKe~g~~YF~~vL~~~~~~~~EqrtmaAFVLAviv~nf 588 (1387)
T KOG1517|consen 509 LSVGIFPYVLKLLQSSARELRPILVFIWAKILAVDPSCQADLVKENGYKYFLQVLDPSQAIPPEQRTMAAFVLAVIVRNF 588 (1387)
T ss_pred hccchHHHHHHHhccchHhhhhhHHHHHHHHHhcCchhHHHHHhccCceeEEEEecCcCCCCHHHHHHHHHHHHHHHccc
Confidence 4679999999999998764 44555554 5778888888888877777777777652 357777778788888764
Q ss_pred cccccccccccchhchHHhhcCc--h-HHHHHHHHHHHHhc-CcchHHHHHhhcCChHHHHHHhhcCCHHHHHHHHHHHH
Q 036199 538 VDIQSHIAPSEFLPKLVPFLKDA--T-LAVSCLVILKNMCN-TEHARVCVVETSGCLPSVAELLEIGSEEDQEHAVAILL 613 (710)
Q Consensus 538 ~en~~~iv~aG~V~~Lv~lL~~~--~-~~~~al~iL~nLa~-~~e~r~~i~~~~g~I~~Lv~lL~~~s~~~ke~A~~aL~ 613 (710)
+-......+.+.|..=+..|.++ . +..=++-.|..|-. .+++|-.=.+ .++...|+.+|....++++..|+-+|-
T Consensus 589 ~lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~G~r-~~AhekL~~~LsD~vpEVRaAAVFALg 667 (1387)
T KOG1517|consen 589 KLGQKACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRLWEDYDEARWSGRR-DNAHEKLILLLSDPVPEVRAAAVFALG 667 (1387)
T ss_pred chhHHHhccccHHHHHHHHhcCCccHHHHHHHHHHHHHHhhhcchhhhcccc-ccHHHHHHHHhcCccHHHHHHHHHHHH
Confidence 55566777888888878888763 2 34445666777766 4566655555 789999999999999999999999998
Q ss_pred HHhcCC----hHHHHHH-----------HhCCchH----HHHHHhhcCCHHHHHHHHHHHH
Q 036199 614 CLCSQR----DQYCKLV-----------MNEGVIP----SLVKISVYGNDKAKVSALELRR 655 (710)
Q Consensus 614 ~Lc~~~----~~~~~~v-----------~~~G~v~----~Lv~L~~~gt~~~k~kA~~LL~ 655 (710)
.+-.+. ++....+ .-+..++ .|+.+.++|++-++..-.-.|.
T Consensus 668 tfl~~~~d~fde~~~~~~~~~~l~~~~~~~E~~i~~~~~~ll~~vsdgsplvr~ev~v~ls 728 (1387)
T KOG1517|consen 668 TFLSNGSDNFDEQTLVVEEEIDLDDERTSIEDLIIKGLMSLLALVSDGSPLVRTEVVVALS 728 (1387)
T ss_pred HHhcccccccchhhhhhhhhhcchhhhhhHHHHHHhhHHHHHHHHhccchHHHHHHHHHHH
Confidence 877652 2221111 1122233 6677788999887755444444
|
|
| >PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B | Back alignment and domain information |
|---|
Probab=93.22 E-value=0.18 Score=39.18 Aligned_cols=52 Identities=15% Similarity=0.091 Sum_probs=41.9
Q ss_pred HHHHHHHHHHhccCchhhHHHhhhCcHHHHHHhhcCCCHHHHHHHHHHHHHh
Q 036199 483 TEETLAILVALSSYAYFISKIVASGALASILNMLDSPNGKFQELAIKILHNL 534 (710)
Q Consensus 483 ~~~Aa~~L~~Ls~~~~nk~~I~~~GaI~~LV~LL~~~~~~~~~~A~~aL~nL 534 (710)
+..|+.+|.+++........-....+++.|+.+|.++++.++..|+.+|.+|
T Consensus 4 R~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 4 RRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred HHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 3578888888775555444445678899999999999999999999999875
|
... |
| >KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.69 E-value=0.057 Score=58.86 Aligned_cols=43 Identities=23% Similarity=0.542 Sum_probs=36.6
Q ss_pred ccccCCccccCCce----ecCCCCccchhhHHHHhhhCCCCCCCCCCccC
Q 036199 269 FKCPLSLRLMYDPV----VIESGQTFERMWIQKWFEEGNHTCPKTKMKLV 314 (710)
Q Consensus 269 f~CPI~~~~m~DPV----~~~~G~ty~r~~I~~w~~~g~~~cP~t~~~l~ 314 (710)
=+||+|++=|-+-| ++.|.|+|--.|+.+|++ .+||+|+--..
T Consensus 176 PTCpVCLERMD~s~~gi~t~~c~Hsfh~~cl~~w~~---~scpvcR~~q~ 222 (493)
T KOG0804|consen 176 PTCPVCLERMDSSTTGILTILCNHSFHCSCLMKWWD---SSCPVCRYCQS 222 (493)
T ss_pred CCcchhHhhcCccccceeeeecccccchHHHhhccc---CcChhhhhhcC
Confidence 48999999998886 569999999999999975 58999975444
|
|
| >COG5369 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=92.34 E-value=0.47 Score=53.17 Aligned_cols=179 Identities=13% Similarity=0.146 Sum_probs=129.8
Q ss_pred CCccccccchHHHHHHhccCcHH--HHHHHHHHHhcc-CchhhHHHhhhCcHHHHHHhhcCCCHHHHHHHHHHHHHhccC
Q 036199 461 GIPYLNEDLFSLLASFLHSAAAT--EETLAILVALSS-YAYFISKIVASGALASILNMLDSPNGKFQELAIKILHNLSSD 537 (710)
Q Consensus 461 k~~i~~~gaI~~LV~lL~s~~~~--~~Aa~~L~~Ls~-~~~nk~~I~~~GaI~~LV~LL~~~~~~~~~~A~~aL~nLs~~ 537 (710)
|....+..+.++|+++|+++... --+...++|+-. ...-+..+.+.|.|..|++++.+.|...+.+..+.|+.|..+
T Consensus 424 RTgL~d~~I~elLi~~Ls~Peimi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~sKDdaLqans~wvlrHlmyn 503 (743)
T COG5369 424 RTGLLDYPIVELLIDALSNPEIMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVMSKDDALQANSEWVLRHLMYN 503 (743)
T ss_pred HhhccccchHHHHHHHhcCccceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhhcchhhhhhcchhhhhhhhhc
Confidence 34456778899999999998764 356777777764 455666777899999999999988999999999999999986
Q ss_pred cccc--cccccccchhchHHhhcCch--HHHHHHHHHHHHhc----CcchHHHHHh---hcCChHHHHHHhhcCCHHHHH
Q 036199 538 VDIQ--SHIAPSEFLPKLVPFLKDAT--LAVSCLVILKNMCN----TEHARVCVVE---TSGCLPSVAELLEIGSEEDQE 606 (710)
Q Consensus 538 ~en~--~~iv~aG~V~~Lv~lL~~~~--~~~~al~iL~nLa~----~~e~r~~i~~---~~g~I~~Lv~lL~~~s~~~ke 606 (710)
.++- -+....-++..++.+..|+. +++.++.+|+|+.- +++.+..... ..-....|++.++..+|-.-+
T Consensus 504 cq~~ekf~~Lakig~~kvl~~~NDpc~~vq~q~lQilrNftc~~~knEkskdv~~K~~p~~ylfk~l~~k~e~~np~~i~ 583 (743)
T COG5369 504 CQKNEKFKFLAKIGVEKVLSYTNDPCFKVQHQVLQILRNFTCDTSKNEKSKDVFIKATPRRYLFKRLIDKYEENNPMEIL 583 (743)
T ss_pred CcchhhhhhHHhcCHHHHHHHhcCcccccHHHHHHHHHhcccccccccccceeEEecChHHHHHHHHHHHHHhcCchhhh
Confidence 5543 45667788899999998874 59999999999965 2223322221 012345677777778888888
Q ss_pred HHHHHHHHHhcCChHHHHHHHhC-CchHHHHHHh
Q 036199 607 HAVAILLCLCSQRDQYCKLVMNE-GVIPSLVKIS 639 (710)
Q Consensus 607 ~A~~aL~~Lc~~~~~~~~~v~~~-G~v~~Lv~L~ 639 (710)
..+.+|.+++..+...+..+.+. ..+....+++
T Consensus 584 ~~~yilv~~aa~d~~l~~~V~~q~~~L~~i~eil 617 (743)
T COG5369 584 EGCYILVRNAACDDTLDYIVQSQEDMLDSIFEIL 617 (743)
T ss_pred hhHHHHHHHHhccchHHHHHHhHHHHHHHHHHHH
Confidence 88999988888776655655543 3444444443
|
|
| >KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=92.31 E-value=1.7 Score=52.50 Aligned_cols=190 Identities=11% Similarity=0.074 Sum_probs=138.5
Q ss_pred cchHHHHHHhccCcHHHHHHHHHHHhccCchhhHHH---hhhCcHHHHHHhhcCCCHHHHHHHHHHHHH-hccCcccccc
Q 036199 468 DLFSLLASFLHSAAATEETLAILVALSSYAYFISKI---VASGALASILNMLDSPNGKFQELAIKILHN-LSSDVDIQSH 543 (710)
Q Consensus 468 gaI~~LV~lL~s~~~~~~Aa~~L~~Ls~~~~nk~~I---~~~GaI~~LV~LL~~~~~~~~~~A~~aL~n-Ls~~~en~~~ 543 (710)
.-+|.++++|-+...+-.|+..|...- +-..-.+ ..-|..|.+++||.+...+.+.--+-+=.. |+.++.-...
T Consensus 472 eQLPiVLQVLLSQvHRlRAL~LL~RFL--DlGpWAV~LaLsVGIFPYVLKLLQS~a~ELrpiLVFIWAKILAvD~SCQ~d 549 (1387)
T KOG1517|consen 472 EQLPIVLQVLLSQVHRLRALVLLARFL--DLGPWAVDLALSVGIFPYVLKLLQSSARELRPILVFIWAKILAVDPSCQAD 549 (1387)
T ss_pred HhcchHHHHHHHHHHHHHHHHHHHHHh--ccchhhhhhhhccchHHHHHHHhccchHhhhhhHHHHHHHHHhcCchhHHH
Confidence 456777777766654444444443222 2222222 246999999999999888877654444334 4456555567
Q ss_pred cccccchhchHHhhcC-c----hHHHHHHHHHHHHhc-CcchHHHHHhhcCChHHHHHHhhcC-CHHHHHHHHHHHHHHh
Q 036199 544 IAPSEFLPKLVPFLKD-A----TLAVSCLVILKNMCN-TEHARVCVVETSGCLPSVAELLEIG-SEEDQEHAVAILLCLC 616 (710)
Q Consensus 544 iv~aG~V~~Lv~lL~~-~----~~~~~al~iL~nLa~-~~e~r~~i~~~~g~I~~Lv~lL~~~-s~~~ke~A~~aL~~Lc 616 (710)
+++.++=...+..|.+ + +-..-|+-+|+.++. ..-|+.+-.+ .+.|..=++.|..+ .+-.+...+-+|-.|-
T Consensus 550 LvKe~g~~YF~~vL~~~~~~~~EqrtmaAFVLAviv~nf~lGQ~acl~-~~li~iCle~lnd~~~pLLrQW~~icLG~LW 628 (1387)
T KOG1517|consen 550 LVKENGYKYFLQVLDPSQAIPPEQRTMAAFVLAVIVRNFKLGQKACLN-GNLIGICLEHLNDDPEPLLRQWLCICLGRLW 628 (1387)
T ss_pred HHhccCceeEEEEecCcCCCCHHHHHHHHHHHHHHHcccchhHHHhcc-ccHHHHHHHHhcCCccHHHHHHHHHHHHHHh
Confidence 8888777777777755 2 345667888898888 4778888887 67788777788775 5778899999998888
Q ss_pred cCChHHHHHHHhCCchHHHHHHhhcCCHHHHHHHHHHHHHhhhc
Q 036199 617 SQRDQYCKLVMNEGVIPSLVKISVYGNDKAKVSALELRRLLRDV 660 (710)
Q Consensus 617 ~~~~~~~~~v~~~G~v~~Lv~L~~~gt~~~k~kA~~LL~~l~~~ 660 (710)
.+....+=.=++.++.+.|+.++.+..+++|..|.-.|..|-..
T Consensus 629 ~d~~~Arw~G~r~~AhekL~~~LsD~vpEVRaAAVFALgtfl~~ 672 (1387)
T KOG1517|consen 629 EDYDEARWSGRRDNAHEKLILLLSDPVPEVRAAAVFALGTFLSN 672 (1387)
T ss_pred hhcchhhhccccccHHHHHHHHhcCccHHHHHHHHHHHHHHhcc
Confidence 88877777788899999999999999999999999999866654
|
|
| >PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised | Back alignment and domain information |
|---|
Probab=92.22 E-value=0.4 Score=48.92 Aligned_cols=80 Identities=20% Similarity=0.218 Sum_probs=62.7
Q ss_pred HHHHHHHHHHHHHhccCcccccccccccc-------hhchHHhhcC---chHHHHHHHHHHHHhcCcchHH-HHHhhcCC
Q 036199 521 GKFQELAIKILHNLSSDVDIQSHIAPSEF-------LPKLVPFLKD---ATLAVSCLVILKNMCNTEHARV-CVVETSGC 589 (710)
Q Consensus 521 ~~~~~~A~~aL~nLs~~~en~~~iv~aG~-------V~~Lv~lL~~---~~~~~~al~iL~nLa~~~e~r~-~i~~~~g~ 589 (710)
..-+..|+.+|+.||..+.|...+...+- +..|+++|.. .-.+|-|+.+|.+||..++... .+....++
T Consensus 138 lSPqrlaLEaLcKLsV~e~NVDliLaTpp~sRlE~l~~~L~r~l~~~e~~v~REfAvvlL~~La~~~~~~~r~iA~q~~~ 217 (257)
T PF12031_consen 138 LSPQRLALEALCKLSVIENNVDLILATPPFSRLERLFHTLVRLLGMREDQVCREFAVVLLSNLAQGDEAAARAIAMQKPC 217 (257)
T ss_pred CCHHHHHHHHHHHhheeccCcceeeeCCCHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhch
Confidence 35688999999999999999999988763 4445555533 4569999999999999766544 55555899
Q ss_pred hHHHHHHhhcC
Q 036199 590 LPSVAELLEIG 600 (710)
Q Consensus 590 I~~Lv~lL~~~ 600 (710)
|..|+..++..
T Consensus 218 i~~Li~FiE~a 228 (257)
T PF12031_consen 218 ISHLIAFIEDA 228 (257)
T ss_pred HHHHHHHHHHH
Confidence 99999999754
|
This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM. |
| >PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B | Back alignment and domain information |
|---|
Probab=91.91 E-value=0.3 Score=37.86 Aligned_cols=54 Identities=13% Similarity=0.040 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHHHhcCChHHHHHHHhCCchHHHHHHhhcCCHHHHHHHHHHHHH
Q 036199 602 EEDQEHAVAILLCLCSQRDQYCKLVMNEGVIPSLVKISVYGNDKAKVSALELRRL 656 (710)
Q Consensus 602 ~~~ke~A~~aL~~Lc~~~~~~~~~v~~~G~v~~Lv~L~~~gt~~~k~kA~~LL~~ 656 (710)
+.+|+.|+++|.+++...+..... ....+++.|+.++.+.++.+|..|...|..
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~-~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~ 54 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQP-YLPELLPALIPLLQDDDDSVRAAAAWALGN 54 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHH-HHHHHHHHHHHHTTSSSHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHhhHhcccHHHHHH-HHHHHHHHHHHHHcCCCHHHHHHHHHHHhc
Confidence 468899999999988777544333 566788999999999999999999988864
|
... |
| >KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=91.91 E-value=0.084 Score=56.92 Aligned_cols=60 Identities=23% Similarity=0.484 Sum_probs=48.5
Q ss_pred ccccCCccccCCc-----eecCCCCccchhhHHHHhhh-CCCCCCCCCCccCCCCCcccHHHHHHH
Q 036199 269 FKCPLSLRLMYDP-----VVIESGQTFERMWIQKWFEE-GNHTCPKTKMKLVCQSLTPNTAMKDLI 328 (710)
Q Consensus 269 f~CPI~~~~m~DP-----V~~~~G~ty~r~~I~~w~~~-g~~~cP~t~~~l~~~~l~pN~~l~~~i 328 (710)
-+||||++-..=| |++.|||-|--.||++|+.+ -...||.|...-..+.+.|-+++|...
T Consensus 5 ~tcpiclds~~~~g~hr~vsl~cghlFgs~cie~wl~k~~~~~cp~c~~katkr~i~~e~alR~qa 70 (463)
T KOG1645|consen 5 TTCPICLDSYTTAGNHRIVSLQCGHLFGSQCIEKWLGKKTKMQCPLCSGKATKRQIRPEYALRVQA 70 (463)
T ss_pred ccCceeeeeeeecCceEEeeecccccccHHHHHHHHhhhhhhhCcccCChhHHHHHHHHHHHHHHH
Confidence 5799999877766 56799999999999999942 234699998877777888888877655
|
|
| >KOG2259 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=91.78 E-value=1.1 Score=51.70 Aligned_cols=107 Identities=16% Similarity=0.126 Sum_probs=82.1
Q ss_pred cccccccchhchHHhhcCc--hHHHHHHHHHHHHhcCcchHHHHHhhcCChHHHHHHhhcCCHHHHHHHHHHHHHHhcCC
Q 036199 542 SHIAPSEFLPKLVPFLKDA--TLAVSCLVILKNMCNTEHARVCVVETSGCLPSVAELLEIGSEEDQEHAVAILLCLCSQR 619 (710)
Q Consensus 542 ~~iv~aG~V~~Lv~lL~~~--~~~~~al~iL~nLa~~~e~r~~i~~~~g~I~~Lv~lL~~~s~~~ke~A~~aL~~Lc~~~ 619 (710)
..++.+|+-.++|.-|.|+ +++..|+..+..|+.+..+- . ..++.-||+++......++..|+.+|..++.+
T Consensus 367 ~siI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~ssP~F---A--~~aldfLvDMfNDE~~~VRL~ai~aL~~Is~~- 440 (823)
T KOG2259|consen 367 ESIIPSGACGALVHGLEDEFYEVRRAAVASLCSLATSSPGF---A--VRALDFLVDMFNDEIEVVRLKAIFALTMISVH- 440 (823)
T ss_pred cccccccccceeeeechHHHHHHHHHHHHHHHHHHcCCCCc---H--HHHHHHHHHHhccHHHHHHHHHHHHHHHHHHH-
Confidence 3578889999999999775 78999999999999854432 2 23578899999888889999999999888766
Q ss_pred hHHHHHHHhCCchHHHHHHhhcCCHHHHHHHHHHHHHhhh
Q 036199 620 DQYCKLVMNEGVIPSLVKISVYGNDKAKVSALELRRLLRD 659 (710)
Q Consensus 620 ~~~~~~v~~~G~v~~Lv~L~~~gt~~~k~kA~~LL~~l~~ 659 (710)
..+++.-++....-+.+.+..+|+.+..||+..+-
T Consensus 441 -----l~i~eeql~~il~~L~D~s~dvRe~l~elL~~~~~ 475 (823)
T KOG2259|consen 441 -----LAIREEQLRQILESLEDRSVDVREALRELLKNARV 475 (823)
T ss_pred -----heecHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC
Confidence 34445556777777778888888877777775543
|
|
| >KOG1248 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=91.74 E-value=4.2 Score=49.96 Aligned_cols=209 Identities=19% Similarity=0.164 Sum_probs=120.0
Q ss_pred CCHHHHHHHHHHHHHHhccCCCCCccccccchHHHHHHhc----cCcH--HHHHHHHH---HHhccCchhhHHHhhhCcH
Q 036199 439 HDSRAQRIGCRLLLAFVSKNRSGIPYLNEDLFSLLASFLH----SAAA--TEETLAIL---VALSSYAYFISKIVASGAL 509 (710)
Q Consensus 439 ~d~~~q~~A~~~L~nL~~~~~~k~~i~~~gaI~~LV~lL~----s~~~--~~~Aa~~L---~~Ls~~~~nk~~I~~~GaI 509 (710)
.+..+|..+-.+|..++....... ....-+.-+-+.|. +... +..+..+| +.+.. .++...| .-.|
T Consensus 666 ~~~~vQkK~yrlL~~l~~~~s~~~--~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~-~e~~~~i--~k~I 740 (1176)
T KOG1248|consen 666 SSTKVQKKAYRLLEELSSSPSGEG--LVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLS-AEHCDLI--PKLI 740 (1176)
T ss_pred ccHHHHHHHHHHHHHHhcCCchhh--HHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhcc-HHHHHHH--HHHH
Confidence 478899999999998865421111 11112223333332 2221 22333444 33333 2333333 2346
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHhcc----CcccccccccccchhchHHhhcCc---hHHH-HH--HHHHHHHhcCcch
Q 036199 510 ASILNMLDSPNGKFQELAIKILHNLSS----DVDIQSHIAPSEFLPKLVPFLKDA---TLAV-SC--LVILKNMCNTEHA 579 (710)
Q Consensus 510 ~~LV~LL~~~~~~~~~~A~~aL~nLs~----~~en~~~iv~aG~V~~Lv~lL~~~---~~~~-~a--l~iL~nLa~~~e~ 579 (710)
|-+|-.++..+...++.|-.+|+.+.. .++.... ....|...+..|..+ +... .| +-++..+....
T Consensus 741 ~EvIL~~Ke~n~~aR~~Af~lL~~i~~i~~~~d~g~e~--~~~~lnefl~~Isagl~gd~~~~~as~Ivai~~il~e~-- 816 (1176)
T KOG1248|consen 741 PEVILSLKEVNVKARRNAFALLVFIGAIQSSLDDGNEP--ASAILNEFLSIISAGLVGDSTRVVASDIVAITHILQEF-- 816 (1176)
T ss_pred HHHHHhcccccHHHHhhHHHHHHHHHHHHhhhcccccc--hHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHH--
Confidence 666656688889999999999998882 1111111 122444455554322 1111 11 22333332211
Q ss_pred HHHHHh---hcCChHHHHHHhhcCCHHHHHHHHHHHHHHhcCChHHHHHHHhCCchHHHHHHhhcCCHHHHHHHHHHHHH
Q 036199 580 RVCVVE---TSGCLPSVAELLEIGSEEDQEHAVAILLCLCSQRDQYCKLVMNEGVIPSLVKISVYGNDKAKVSALELRRL 656 (710)
Q Consensus 580 r~~i~~---~~g~I~~Lv~lL~~~s~~~ke~A~~aL~~Lc~~~~~~~~~v~~~G~v~~Lv~L~~~gt~~~k~kA~~LL~~ 656 (710)
..+.. ..+.+..+...|..+++++...|++.+..++..-++.+..-...-++|.+..++.+.+...|.+..-||..
T Consensus 817 -~~~ld~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~l~~~~~~LL~sll~ls~d~k~~~r~Kvr~Llek 895 (1176)
T KOG1248|consen 817 -KNILDDETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPEECLSPHLEELLPSLLALSHDHKIKVRKKVRLLLEK 895 (1176)
T ss_pred -hccccHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHHHhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 11111 02345555556667899999999999999999888766665666689999999999999999999888875
Q ss_pred h
Q 036199 657 L 657 (710)
Q Consensus 657 l 657 (710)
|
T Consensus 896 L 896 (1176)
T KOG1248|consen 896 L 896 (1176)
T ss_pred H
Confidence 5
|
|
| >KOG3113 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=91.73 E-value=0.11 Score=52.43 Aligned_cols=51 Identities=14% Similarity=0.154 Sum_probs=41.6
Q ss_pred CCcccccCCccccCCce----ecCCCCccchhhHHHHhhhCCCCCCCCCCccCCCCCc
Q 036199 266 PEVFKCPLSLRLMYDPV----VIESGQTFERMWIQKWFEEGNHTCPKTKMKLVCQSLT 319 (710)
Q Consensus 266 p~~f~CPI~~~~m~DPV----~~~~G~ty~r~~I~~w~~~g~~~cP~t~~~l~~~~l~ 319 (710)
-..|+|||++-.|.+-. +-+|||.|.-.+.++-- ..+||+|++.+...+.+
T Consensus 109 ~a~fiCPvtgleMng~~~F~~l~~CGcV~SerAlKeik---as~C~~C~a~y~~~dvI 163 (293)
T KOG3113|consen 109 RARFICPVTGLEMNGKYRFCALRCCGCVFSERALKEIK---ASVCHVCGAAYQEDDVI 163 (293)
T ss_pred cceeecccccceecceEEEEEEeccceeccHHHHHHhh---hccccccCCcccccCeE
Confidence 45799999999999864 45999999988877663 56899999999877643
|
|
| >KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.56 E-value=4.9 Score=41.27 Aligned_cols=173 Identities=13% Similarity=0.142 Sum_probs=115.4
Q ss_pred HHHHHHHHHhccCchhhHHHhhhCcHHHHHHhhcC-----CCHHHHHHHHHHHHHhccCc--ccccccccccchhchHHh
Q 036199 484 EETLAILVALSSYAYFISKIVASGALASILNMLDS-----PNGKFQELAIKILHNLSSDV--DIQSHIAPSEFLPKLVPF 556 (710)
Q Consensus 484 ~~Aa~~L~~Ls~~~~nk~~I~~~GaI~~LV~LL~~-----~~~~~~~~A~~aL~nLs~~~--en~~~iv~aG~V~~Lv~l 556 (710)
-+|.+.|..++.+++.|..+..+..=-.|-.+|.. ..+-.+-.+++.|..|..++ +....+...++||..++.
T Consensus 97 cnaL~LlQcvASHpdTr~~FL~A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPlCLri 176 (293)
T KOG3036|consen 97 CNALALLQCVASHPDTRRAFLRAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPLCLRI 176 (293)
T ss_pred HHHHHHHHHHhcCcchHHHHHHccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHHHHHH
Confidence 38888889999999999999986643333444432 23456778899999998744 445667889999999999
Q ss_pred hcCc--hHHHHHHHHHHHHhcCcchHHHHHhhcCC-------hHHHHH-HhhcCCHHHHHHHHHHHHHHhcCChHHHHHH
Q 036199 557 LKDA--TLAVSCLVILKNMCNTEHARVCVVETSGC-------LPSVAE-LLEIGSEEDQEHAVAILLCLCSQRDQYCKLV 626 (710)
Q Consensus 557 L~~~--~~~~~al~iL~nLa~~~e~r~~i~~~~g~-------I~~Lv~-lL~~~s~~~ke~A~~aL~~Lc~~~~~~~~~v 626 (710)
+..+ .-..-|.-|+..+-.++.|-..|.++..- +..+|. +.+.++++.-.+++.+...||.+. ..+..+
T Consensus 177 me~GSelSKtvA~fIlqKIlldD~GL~YiCqt~eRF~av~~~L~kmv~~l~~~ps~RllKhviRcYlrLsdnp-rar~aL 255 (293)
T KOG3036|consen 177 MESGSELSKTVATFILQKILLDDVGLYYICQTAERFSAVALVLGKMVFQLVSMPSPRLLKHVIRCYLRLSDNP-RARAAL 255 (293)
T ss_pred HhcccHHHHHHHHHHHHHHhhccccHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCH-HHHHHH
Confidence 9654 33667788888888888888877664322 222232 334589999999999999999887 333333
Q ss_pred HhCCchHHH----HHHhhcCCHHHHHHHHHHHHHhh
Q 036199 627 MNEGVIPSL----VKISVYGNDKAKVSALELRRLLR 658 (710)
Q Consensus 627 ~~~G~v~~L----v~L~~~gt~~~k~kA~~LL~~l~ 658 (710)
. .-.-..| ....-..++.+|+--+.++..+.
T Consensus 256 ~-~clPd~Lrd~tfs~~l~~D~~~k~~l~~ll~~l~ 290 (293)
T KOG3036|consen 256 R-SCLPDQLRDGTFSLLLKDDPETKQWLQQLLKNLC 290 (293)
T ss_pred H-hhCcchhccchHHHHHhcChhHHHHHHHHHHHhc
Confidence 2 2221222 22223344555655555665553
|
|
| >KOG0883 consensus Cyclophilin type, U box-containing peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=91.52 E-value=0.14 Score=54.83 Aligned_cols=58 Identities=28% Similarity=0.396 Sum_probs=50.5
Q ss_pred cccccCCccccCCceecCCCCccchhhHHHHhhhCCCCCCCCCCccCCCCCcccHHHHH
Q 036199 268 VFKCPLSLRLMYDPVVIESGQTFERMWIQKWFEEGNHTCPKTKMKLVCQSLTPNTAMKD 326 (710)
Q Consensus 268 ~f~CPI~~~~m~DPV~~~~G~ty~r~~I~~w~~~g~~~cP~t~~~l~~~~l~pN~~l~~ 326 (710)
...|.+++..|.|||-+..|..||-..|-.|+.. +.+-|.||+++...+|++-..-|+
T Consensus 40 ~~hC~lt~~Pfe~PvC~~dg~vFd~~~Ivp~lkk-~g~nP~tG~kl~~~dLIkL~F~Kn 97 (518)
T KOG0883|consen 40 FNHCSLTMLPFEDPVCTVDGTVFDLTAIVPWLKK-HGTNPITGQKLDGKDLIKLKFHKN 97 (518)
T ss_pred hhhceeccccccCcccccCCcEEeeehhhHHHHH-cCCCCCCCCccccccceeeeeccC
Confidence 5689999999999999999999999999999985 678999999999988887433333
|
|
| >KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=91.41 E-value=1.1 Score=50.56 Aligned_cols=154 Identities=20% Similarity=0.209 Sum_probs=112.3
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHhccCcccccccccccchhchHHhhcCch------HHHHHHHHHHHHhcCcchHHH
Q 036199 509 LASILNMLDSPNGKFQELAIKILHNLSSDVDIQSHIAPSEFLPKLVPFLKDAT------LAVSCLVILKNMCNTEHARVC 582 (710)
Q Consensus 509 I~~LV~LL~~~~~~~~~~A~~aL~nLs~~~en~~~iv~aG~V~~Lv~lL~~~~------~~~~al~iL~nLa~~~e~r~~ 582 (710)
...+.+++.+|+...+..|...|..|+.++.-...+++..++..|..++.+++ +...++.++..|-.+.---..
T Consensus 85 a~~i~e~l~~~~~~~~~~a~k~l~sls~d~~fa~efi~~~gl~~L~~liedg~~~~~~~~L~~~L~af~elmehgvvsW~ 164 (713)
T KOG2999|consen 85 AKRIMEILTEGNNISKMEALKELDSLSLDPTFAEEFIRCSGLELLFSLIEDGRVCMSSELLSTSLRAFSELMEHGVVSWE 164 (713)
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHhcchHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhceeeee
Confidence 34556788899999999999999999999999999999999999999996653 344445554444333221111
Q ss_pred HHhhcCChHHHHHHhh--cCCHHHHHHHHHHHHHHhcCChHHHHHHHhCCchHHHHHHhhcCCHHHHHHHHHHHH-Hhhh
Q 036199 583 VVETSGCLPSVAELLE--IGSEEDQEHAVAILLCLCSQRDQYCKLVMNEGVIPSLVKISVYGNDKAKVSALELRR-LLRD 659 (710)
Q Consensus 583 i~~~~g~I~~Lv~lL~--~~s~~~ke~A~~aL~~Lc~~~~~~~~~v~~~G~v~~Lv~L~~~gt~~~k~kA~~LL~-~l~~ 659 (710)
.+. ..+|...+.++. .-+..+-..|+..|-++-.++....+.+.++--+..|+..++.++.+.+.+|.+|+. ++++
T Consensus 165 ~~~-~~fV~~~a~~V~~~~~~a~~~~~AL~~LE~~vl~s~~~~~~v~eev~i~~li~hlq~~n~~i~~~aial~nal~~~ 243 (713)
T KOG2999|consen 165 SVS-NDFVVSMASYVNAKREDANTLLAALQMLESLVLGSDTLRQLVAEEVPIETLIRHLQVSNQRIQTCAIALLNALFRK 243 (713)
T ss_pred ecc-cHHHHHHHHHHhhhhhcccchHHHHHHHHHHHhCChHHHHHHHhcCcHHHHHHHHHhcchHHHHHHHHHHHHHHhh
Confidence 122 234444444443 235556778999999988888778899999999999999999999999999999998 5555
Q ss_pred ccCC
Q 036199 660 VAYS 663 (710)
Q Consensus 660 ~~~~ 663 (710)
+..+
T Consensus 244 a~~~ 247 (713)
T KOG2999|consen 244 APDD 247 (713)
T ss_pred CChH
Confidence 4433
|
|
| >KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only] | Back alignment and domain information |
|---|
Probab=91.35 E-value=3.6 Score=48.57 Aligned_cols=227 Identities=16% Similarity=0.099 Sum_probs=145.8
Q ss_pred HHHccCcccchhcccCCcHHHHHHHhhccccCCCHHHHHHHHHHHHHHhccCCCCCccccccchHHHHHHhccCcHH---
Q 036199 407 TRLEHDNQVSHSLSSTNFVEPLIRFLRDARDLHDSRAQRIGCRLLLAFVSKNRSGIPYLNEDLFSLLASFLHSAAAT--- 483 (710)
Q Consensus 407 ~Lak~~~~~r~~I~~~G~I~~LV~lL~s~~~~~d~~~q~~A~~~L~nL~~~~~~k~~i~~~gaI~~LV~lL~s~~~~--- 483 (710)
.++.....-|...+..|+.+.|.++..- ........+..+|-.-..-... .....++++.+.+.+...-
T Consensus 488 ~~aA~~K~~~~~~Ik~~~~~aLlrl~~~----q~e~akl~~~~aL~~~i~f~~~----~~~~v~~~~~s~~~~d~~~~en 559 (748)
T KOG4151|consen 488 YLAAKEKYERAKKIKPGGYEALLRLGQQ----QFEEAKLKWYHALAGKIDFPGE----RSYEVVKPLDSALHNDEKGLEN 559 (748)
T ss_pred HHhhhhHHhcCccccccHHHHHHHHHHH----hchHHHHHHHHHHhhhcCCCCC----chhhhhhhhcchhhhhHHHHHH
Confidence 3333344556677899999999999876 3455666666666511011110 1234555555555443321
Q ss_pred HHHHHHHHHhc-cCchhhHHHhhhCcHHHHHHhhcCCCHHHHHHHHHHHHHhccCcccc-ccccc-ccchhchHHhhcC-
Q 036199 484 EETLAILVALS-SYAYFISKIVASGALASILNMLDSPNGKFQELAIKILHNLSSDVDIQ-SHIAP-SEFLPKLVPFLKD- 559 (710)
Q Consensus 484 ~~Aa~~L~~Ls-~~~~nk~~I~~~GaI~~LV~LL~~~~~~~~~~A~~aL~nLs~~~en~-~~iv~-aG~V~~Lv~lL~~- 559 (710)
-.+.-+|.||+ .++..|..|...-+++.+-.++-..++..+..++..+.||..++.-- ..+++ ...++.....+..
T Consensus 560 ~E~L~altnLas~s~s~r~~i~ke~~~~~ie~~~~ee~~~lqraa~e~~~NLl~~~~~~e~si~e~~~~l~~w~~~~e~~ 639 (748)
T KOG4151|consen 560 FEALEALTNLASISESDRQKILKEKALGKIEELMTEENPALQRAALESIINLLWSPLLYERSIVEYKDRLKLWNLNLEVA 639 (748)
T ss_pred HHHHHHhhcccCcchhhHHHHHHHhcchhhHHHhhcccHHHHHHHHHHHHHHHhhHHHHHHHhhccccCchHHHHHHHhh
Confidence 27888889898 45667777876555665556677788999999999999999876544 33444 3445554444432
Q ss_pred -chHHHHHHHHHHHHhcCcchHHH-HHhhcCChHHHHHHhhcCCHHHHHHHHHHHHHHhcCChHHHHHHHhCCchHHHHH
Q 036199 560 -ATLAVSCLVILKNMCNTEHARVC-VVETSGCLPSVAELLEIGSEEDQEHAVAILLCLCSQRDQYCKLVMNEGVIPSLVK 637 (710)
Q Consensus 560 -~~~~~~al~iL~nLa~~~e~r~~-i~~~~g~I~~Lv~lL~~~s~~~ke~A~~aL~~Lc~~~~~~~~~v~~~G~v~~Lv~ 637 (710)
......+++++..++...++.-. +.+...+...++.++.++++++|-..+.+.+++.....+....+.....++.|..
T Consensus 640 ~E~~~lA~a~a~a~I~sv~~n~c~~~~~~~~~~e~~~~~i~~~~~~~qhrgl~~~ln~~~~~~ei~~~~~~~~~~~~l~~ 719 (748)
T KOG4151|consen 640 DEKFELAGAGALAAITSVVENHCSRILELLEWLEILVRAIQDEDDEIQHRGLVIILNLFEALFEIAEKIFETEVMELLSG 719 (748)
T ss_pred hhHHhhhccccccchhhcchhhhhhHHHhhcchHHHHHhhcCchhhhhhhhhhhhhhHHHHHHHHHHHhccchHHHHHHH
Confidence 23344455556655554444333 4433456788899999999999999988888876666666777777777887776
Q ss_pred Hhhc
Q 036199 638 ISVY 641 (710)
Q Consensus 638 L~~~ 641 (710)
+...
T Consensus 720 ~~~~ 723 (748)
T KOG4151|consen 720 LQKL 723 (748)
T ss_pred HHHh
Confidence 6554
|
|
| >KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=91.32 E-value=7.4 Score=44.23 Aligned_cols=150 Identities=14% Similarity=0.223 Sum_probs=108.3
Q ss_pred hHHHHHHhccCcH--HHHHHHHHHHhccCchhhHHHhhhCcHHHHHHhhcCCCH----HHHHHHHHHHHHhccCcccccc
Q 036199 470 FSLLASFLHSAAA--TEETLAILVALSSYAYFISKIVASGALASILNMLDSPNG----KFQELAIKILHNLSSDVDIQSH 543 (710)
Q Consensus 470 I~~LV~lL~s~~~--~~~Aa~~L~~Ls~~~~nk~~I~~~GaI~~LV~LL~~~~~----~~~~~A~~aL~nLs~~~en~~~ 543 (710)
...+.+++.+|+. +..|...|-.|+.+......+....++..|..++.+|+. ......++++..|-.+.-.-+.
T Consensus 85 a~~i~e~l~~~~~~~~~~a~k~l~sls~d~~fa~efi~~~gl~~L~~liedg~~~~~~~~L~~~L~af~elmehgvvsW~ 164 (713)
T KOG2999|consen 85 AKRIMEILTEGNNISKMEALKELDSLSLDPTFAEEFIRCSGLELLFSLIEDGRVCMSSELLSTSLRAFSELMEHGVVSWE 164 (713)
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHhcchHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhceeeee
Confidence 3456677777764 235888889999998888888888889999999988865 4455566666655544334445
Q ss_pred cccccchhchHHhhc----CchHHHHHHHHHHHHhcCcchHHHHHhhcCChHHHHHHhhcCCHHHHHHHHHHHHHHhcCC
Q 036199 544 IAPSEFLPKLVPFLK----DATLAVSCLVILKNMCNTEHARVCVVETSGCLPSVAELLEIGSEEDQEHAVAILLCLCSQR 619 (710)
Q Consensus 544 iv~aG~V~~Lv~lL~----~~~~~~~al~iL~nLa~~~e~r~~i~~~~g~I~~Lv~lL~~~s~~~ke~A~~aL~~Lc~~~ 619 (710)
.+.-.+|...+.+.. +..+...|+.+|.++..+.......+...--+..|+..|..++...+.+|.+.+-.+....
T Consensus 165 ~~~~~fV~~~a~~V~~~~~~a~~~~~AL~~LE~~vl~s~~~~~~v~eev~i~~li~hlq~~n~~i~~~aial~nal~~~a 244 (713)
T KOG2999|consen 165 SVSNDFVVSMASYVNAKREDANTLLAALQMLESLVLGSDTLRQLVAEEVPIETLIRHLQVSNQRIQTCAIALLNALFRKA 244 (713)
T ss_pred ecccHHHHHHHHHHhhhhhcccchHHHHHHHHHHHhCChHHHHHHHhcCcHHHHHHHHHhcchHHHHHHHHHHHHHHhhC
Confidence 555555555555542 3456788999999999877654444433678999999999999999999998887776544
|
|
| >PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region | Back alignment and domain information |
|---|
Probab=91.17 E-value=0.92 Score=40.07 Aligned_cols=71 Identities=21% Similarity=0.216 Sum_probs=56.3
Q ss_pred CChHHHHHHhhcCCHHHHHHHHHHHHHHhcCChHHHHHHHhCCchHHHHHHhhcCCHHHHHHHHHHHHHhhh
Q 036199 588 GCLPSVAELLEIGSEEDQEHAVAILLCLCSQRDQYCKLVMNEGVIPSLVKISVYGNDKAKVSALELRRLLRD 659 (710)
Q Consensus 588 g~I~~Lv~lL~~~s~~~ke~A~~aL~~Lc~~~~~~~~~v~~~G~v~~Lv~L~~~gt~~~k~kA~~LL~~l~~ 659 (710)
..+++++..+...+.++|..|+.+|.+++..... ...-.=..+++.|..+..+.++.+|..|.-|-++|++
T Consensus 27 ~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~-~~l~~f~~IF~~L~kl~~D~d~~Vr~~a~~Ld~llkd 97 (97)
T PF12755_consen 27 EILPPVLKCFDDQDSRVRYYACEALYNISKVARG-EILPYFNEIFDALCKLSADPDENVRSAAELLDRLLKD 97 (97)
T ss_pred HHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhcC
Confidence 4678888888889999999999999999876522 1111234678899999999999999988888877763
|
|
| >PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1 | Back alignment and domain information |
|---|
Probab=91.12 E-value=1.8 Score=45.01 Aligned_cols=94 Identities=11% Similarity=0.175 Sum_probs=79.7
Q ss_pred HHHHHHHHHHHhc-CcchHHHHHhhcCChHHHHHHhh-cCCHHHHHHHHHHHHHHhcCChHHHHHHHhCCchHHHHHHhh
Q 036199 563 AVSCLVILKNMCN-TEHARVCVVETSGCLPSVAELLE-IGSEEDQEHAVAILLCLCSQRDQYCKLVMNEGVIPSLVKISV 640 (710)
Q Consensus 563 ~~~al~iL~nLa~-~~e~r~~i~~~~g~I~~Lv~lL~-~~s~~~ke~A~~aL~~Lc~~~~~~~~~v~~~G~v~~Lv~L~~ 640 (710)
...|+.+|.-++- |+..|..+.+ ..++..|+.+|. ...+.++-.++.+|..+...++.|...+.+.|++..+..+.+
T Consensus 108 i~~aL~vLQGl~LLHp~Sr~lF~r-~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~N~r~FE~~~Gl~~v~~llk 186 (257)
T PF08045_consen 108 IALALRVLQGLCLLHPPSRKLFHR-EQNMELLLDLLSPSNPPAIQSACLDTLVCILLDSPENQRDFEELNGLSTVCSLLK 186 (257)
T ss_pred HHHHHHHHHHHHHcCchHHHHHhh-hhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcChHHHHHHHHhCCHHHHHHHHc
Confidence 4557788888887 8888888887 789999999995 468999999999999999999999999999999999999976
Q ss_pred cC--CHHHHHHHHHHHHHh
Q 036199 641 YG--NDKAKVSALELRRLL 657 (710)
Q Consensus 641 ~g--t~~~k~kA~~LL~~l 657 (710)
+. +...|-|....|-..
T Consensus 187 ~~~~~~~~r~K~~EFL~fy 205 (257)
T PF08045_consen 187 SKSTDRELRLKCIEFLYFY 205 (257)
T ss_pred cccccHHHhHHHHHHHHHH
Confidence 65 566788888866643
|
Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], []. |
| >PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4 | Back alignment and domain information |
|---|
Probab=91.11 E-value=7 Score=47.26 Aligned_cols=238 Identities=19% Similarity=0.196 Sum_probs=131.3
Q ss_pred hcccCCcHHHHHHHhhccccC-CCHHHHHHHHHHHHHHhccCCCCCccccccchHHHHHHhc----cCc----H--HHHH
Q 036199 418 SLSSTNFVEPLIRFLRDARDL-HDSRAQRIGCRLLLAFVSKNRSGIPYLNEDLFSLLASFLH----SAA----A--TEET 486 (710)
Q Consensus 418 ~I~~~G~I~~LV~lL~s~~~~-~d~~~q~~A~~~L~nL~~~~~~k~~i~~~gaI~~LV~lL~----s~~----~--~~~A 486 (710)
.+.+.|++..|+.+|.+-.+. .+...-...+.+|...+.-..||..+++.|+++.|++.|. .+. . .+..
T Consensus 112 v~~~~gGL~~ll~~l~~~~~~~~~~~ll~~llkLL~~c~Kv~~NR~~Ll~~~al~~LL~~L~~~l~~~~~~~~~~i~E~L 191 (802)
T PF13764_consen 112 VLAECGGLEVLLSRLDSIRDFSRGRELLQVLLKLLRYCCKVKVNRRALLELNALNRLLSVLNRALQANQNSSQAEIAEQL 191 (802)
T ss_pred HhhcCCCHHHHHHHHHhhccccCcHHHHHHHHHHHHHHHhhHHHHHHHHHcCCHHHHHHHHHHHHhCccccccchHHHHH
Confidence 356789999999999763221 1222222333333333445677888888999999999885 222 1 1333
Q ss_pred HHHHHHhccC---chhhHHHh--h--------hCcHHHHHHhhcCC----CHHHHHHHHHHHHHhccCcccccccccccc
Q 036199 487 LAILVALSSY---AYFISKIV--A--------SGALASILNMLDSP----NGKFQELAIKILHNLSSDVDIQSHIAPSEF 549 (710)
Q Consensus 487 a~~L~~Ls~~---~~nk~~I~--~--------~GaI~~LV~LL~~~----~~~~~~~A~~aL~nLs~~~en~~~iv~aG~ 549 (710)
..++..|... ........ . ..-+..|++.+.+. ++......+++|-+|+...+.+..++-. .
T Consensus 192 L~IiE~ll~ea~~~~~~~~~~~~~~~~~~~~~~~~v~~lL~~l~s~~~r~~~~i~~~l~RiLP~Lt~G~~e~m~~Lv~-~ 270 (802)
T PF13764_consen 192 LEIIESLLSEANSSSSSESKSSSSLSGSEEQDKEQVEMLLERLNSPFVRSNPQILQALARILPFLTYGNEEKMDALVE-H 270 (802)
T ss_pred HHHHHHHHHHHhhhhhhhccccccccccccccHHHHHHHHHHhcCccccCCHHHHHHHHHHhhHHhcCCHHHHHHHHH-H
Confidence 3333332211 11111000 1 11266777777544 5788899999999999876665433211 1
Q ss_pred hhchHHhh--cC---ch---HHHHHHHHHHHHhcCcc---hHHHHHhhcCChHHHHHHhhc--------CCHHHHH----
Q 036199 550 LPKLVPFL--KD---AT---LAVSCLVILKNMCNTEH---ARVCVVETSGCLPSVAELLEI--------GSEEDQE---- 606 (710)
Q Consensus 550 V~~Lv~lL--~~---~~---~~~~al~iL~nLa~~~e---~r~~i~~~~g~I~~Lv~lL~~--------~s~~~ke---- 606 (710)
..+.+++= .+ ++ ..+..+.+..++-.+.. -|..|++ .|.+...++.|.. .+++-++
T Consensus 271 F~p~l~f~~~D~~~~~~~~~~Le~F~~i~~~I~~~~~G~~LK~~Il~-~GIv~~a~~YL~~~~P~~~~~~s~eWk~~l~~ 349 (802)
T PF13764_consen 271 FKPYLDFDKFDEEHSPDEQFKLECFCEIAEGIPNNSNGNRLKDKILE-SGIVQDAIDYLLKHFPSLKNTDSPEWKEFLSR 349 (802)
T ss_pred HHHhcChhhcccccCchHHHHHHHHHHHHhcCCCCCchHHHHHHHHH-hhHHHHHHHHHHHhCcccccCCCHHHHHHhcC
Confidence 11111211 11 11 13344444444444443 3678887 7999989988864 2333333
Q ss_pred ----HHHHHHHHHhcCChHHHHHHHhCCchHHHHHHhh-cCCHHHHHHHHHHHHHhh
Q 036199 607 ----HAVAILLCLCSQRDQYCKLVMNEGVIPSLVKISV-YGNDKAKVSALELRRLLR 658 (710)
Q Consensus 607 ----~A~~aL~~Lc~~~~~~~~~v~~~G~v~~Lv~L~~-~gt~~~k~kA~~LL~~l~ 658 (710)
.++..|..||.+... .+.++..++++.|..|-+ +++...=..|-.+|.-|+
T Consensus 350 psLp~iL~lL~GLa~gh~~-tQ~~~~~~~l~~lH~LEqvss~~~IGslAEnlLeal~ 405 (802)
T PF13764_consen 350 PSLPYILRLLRGLARGHEP-TQLLIAEQLLPLLHRLEQVSSEEHIGSLAENLLEALA 405 (802)
T ss_pred CcHHHHHHHHHHHHhcCHH-HHHHHHhhHHHHHHHhhcCCCccchHHHHHHHHHHHh
Confidence 688899999998844 444466777777777632 222333334444444443
|
|
| >PF05659 RPW8: Arabidopsis broad-spectrum mildew resistance protein RPW8; InterPro: IPR008808 This entry represents the RPW8 domain found in several broad-spectrum mildew resistance proteins from Arabidopsis thaliana and other dicots | Back alignment and domain information |
|---|
Probab=91.05 E-value=2 Score=41.01 Aligned_cols=101 Identities=10% Similarity=0.173 Sum_probs=69.0
Q ss_pred ccchhhhhhhHHHHHHHHHhhccchhhhcCC---Cch-hhHHHHHHHHHHHHHHHHHHhccccchhHHHhhhhHHHHHHH
Q 036199 18 FKVHHGMCTQLSKFVERIAKVFPEIEAARPR---CSS-GVQALCLLNNAIGKAKSLLQYCSESSKLYLAITGGVIVSRCM 93 (710)
Q Consensus 18 ~~~~~~~c~~l~~~~~ri~ll~pllEelr~~---~~~-~~~~l~~L~~~l~~ak~Ll~~c~~~Sklyl~~~~~~i~~~~~ 93 (710)
+..+|..+..|.. -|..|.|.++|+... .+. ...-+..|...|++|+.|++.|++.++ |=++.--....+++
T Consensus 29 ~~~fk~~l~~L~s---Tl~~i~P~i~eI~~~~~eld~~~~ee~e~L~~~L~~g~~LV~k~sk~~r-~n~~kk~~y~~Ki~ 104 (147)
T PF05659_consen 29 SLSFKSILKRLES---TLESIIPIIKEIDKLNVELDRPRQEEIERLKELLEKGKELVEKCSKVRR-WNLYKKPRYARKIE 104 (147)
T ss_pred HHhhhhHHHHHHH---HHHHhhhHHHHHHHHhhhcCCchhHHHHHHHHHHHHHHHHHHHhccccH-HHHHhhHhHHHHHH
Confidence 3455666666555 667778888888632 222 377888999999999999999998864 55567777888888
Q ss_pred HHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHH
Q 036199 94 RSTNMMEQSLSQIESMVPVMLAVEISQIIDDL 125 (710)
Q Consensus 94 ~~~~~l~~~L~~i~~~~~~~l~~~v~~~~~~l 125 (710)
++-.+|...+.. .++.....++.++...+
T Consensus 105 ~le~~l~~f~~v---~~q~~~~~D~~~l~~~~ 133 (147)
T PF05659_consen 105 ELEESLRRFIQV---DLQLHQLRDIKELLAKM 133 (147)
T ss_pred HHHHHHHHHhcc---hhHHHHHHHHHHHHHHH
Confidence 888888887642 13344433444444444
|
Plant disease resistance (R) genes control the recognition of specific pathogens and activate subsequent defence responses. The R protein-mediated defences typically involve a rapid, localized necrosis, or hypersensitive response (HR), at the site of infection, and the localised formation of antimicrobial chemicals and proteins that restrict growth of the pathogen. The A. thaliana locus Resistance to Powdery Mildew 8 (RPW8) contains two naturally polymorphic, dominant R genes: RPW8.1 and RPW8.2, which individually control resistance to a broad range of powdery mildew pathogens. They induce localised, salicylic acid-dependent defences similar to those induced by R genes that control specific resistance. Apparently, broad-spectrum resistance mediated by RPW8 uses the same mechanisms as specific resistance [, ]. RPW8.1 and RPW8.2 share similarity with an ~150 amino acid module forming the N terminus of a group of disease resistance proteins, which have a nucleotide-binding site (NBS) and leucine-rich repeats (LRRs) [, ]. The RPW8 domain sequences contain a predicted N-terminal transmembrane (TM) region or possibly a signal peptide, and a coiled-coil (CC) motif []. |
| >PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms [] | Back alignment and domain information |
|---|
Probab=90.85 E-value=2.3 Score=44.16 Aligned_cols=219 Identities=18% Similarity=0.195 Sum_probs=134.9
Q ss_pred CHHHHHHHHHHHHHHHccCcccchhc-ccCCcHHHHHHHhhccc---cCCC-----HHHHHHHHHHHHHHhccCCCCCcc
Q 036199 394 NWDCQCKVIEDYETRLEHDNQVSHSL-SSTNFVEPLIRFLRDAR---DLHD-----SRAQRIGCRLLLAFVSKNRSGIPY 464 (710)
Q Consensus 394 ~~e~q~~Al~~L~~Lak~~~~~r~~I-~~~G~I~~LV~lL~s~~---~~~d-----~~~q~~A~~~L~nL~~~~~~k~~i 464 (710)
+++.+..|+.+|..--+..++--..+ -..|.+..|++-+-+-- ..+. ..-..+|+.+|..+++|.+.|..+
T Consensus 8 ~~~~Re~Al~eLsk~r~~~~~La~~LW~s~G~i~~LLqEIisiYp~l~~~~Lt~~~snRVcnaLaLlQ~vAshpetr~~F 87 (262)
T PF04078_consen 8 NPETRENALLELSKKRESFPDLAPLLWHSFGTIAALLQEIISIYPALSPPNLTARQSNRVCNALALLQCVASHPETRMPF 87 (262)
T ss_dssp SHHHHHHHHHHHHHTCCC-TTHHHHHHTSTTHHHHHHHHHHGGGGGTTTT---HHHHHHHHHHHHHHHHHHH-TTTHHHH
T ss_pred CcchHHHHHHHHHHhhhcccchhHHHHcCCChHHHHHHHHHHHcccCCCcccCHHHHHHHHHHHHHHHHHHcChHHHHHH
Confidence 45666667666543322222222222 35688888877554321 0011 123456666777778999999998
Q ss_pred ccccchHHHHHHhccCcHH---H----HHHHHHHHhccCc--hhhHHHhhhCcHHHHHHhhcCCCHHHHHHHHHHHHHhc
Q 036199 465 LNEDLFSLLASFLHSAAAT---E----ETLAILVALSSYA--YFISKIVASGALASILNMLDSPNGKFQELAIKILHNLS 535 (710)
Q Consensus 465 ~~~gaI~~LV~lL~s~~~~---~----~Aa~~L~~Ls~~~--~nk~~I~~~GaI~~LV~LL~~~~~~~~~~A~~aL~nLs 535 (710)
+++...--|.-+|+..+.. | .+.+++..|.+.+ +.-..+...+.||..++.+..|+.-.|.-|.-++..+-
T Consensus 88 l~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcLr~me~GselSKtvAtfIlqKIL 167 (262)
T PF04078_consen 88 LKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCLRIMEFGSELSKTVATFILQKIL 167 (262)
T ss_dssp HHTTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHHHHHHHS-HHHHHHHHHHHHHHH
T ss_pred HHcCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 8999888888888755431 2 6788888888643 44444557899999999999999999999999999998
Q ss_pred cCccccccccc-ccc-------hhchHHhh---cCchHHHHHHHHHHHHhcCcchHHHHHhhcCChHHHHH-----Hhhc
Q 036199 536 SDVDIQSHIAP-SEF-------LPKLVPFL---KDATLAVSCLVILKNMCNTEHARVCVVETSGCLPSVAE-----LLEI 599 (710)
Q Consensus 536 ~~~en~~~iv~-aG~-------V~~Lv~lL---~~~~~~~~al~iL~nLa~~~e~r~~i~~~~g~I~~Lv~-----lL~~ 599 (710)
.++..-..+.+ ..- +..+|.-| .++.+....+.+-..|+.++.+|.++.. ++|..++ .+-.
T Consensus 168 ~dd~GL~yiC~t~eRf~av~~vL~~mV~~l~~~pS~RLLKhIIrCYlRLsdnprar~aL~~---~LP~~Lrd~~f~~~l~ 244 (262)
T PF04078_consen 168 LDDVGLNYICQTAERFFAVAMVLNKMVEQLVKQPSPRLLKHIIRCYLRLSDNPRAREALRQ---CLPDQLRDGTFSNILK 244 (262)
T ss_dssp HSHHHHHHHTSSHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHTTSTTHHHHHHH---HS-GGGTSSTTTTGGC
T ss_pred cchhHHHHHhcCHHHHHHHHHHHHHHHHHHccCCChhHHHHHHHHHHHHccCHHHHHHHHH---hCcHHHhcHHHHHHHh
Confidence 88776655543 222 22222222 2356788889999999999999998875 3444221 1112
Q ss_pred CCHHHHHHHHHHHHHH
Q 036199 600 GSEEDQEHAVAILLCL 615 (710)
Q Consensus 600 ~s~~~ke~A~~aL~~L 615 (710)
+++..+..-...+.++
T Consensus 245 ~D~~~k~~l~qLl~nl 260 (262)
T PF04078_consen 245 DDPSTKRWLQQLLSNL 260 (262)
T ss_dssp S-HHHHHHHHHHHHHT
T ss_pred cCHHHHHHHHHHHHHh
Confidence 4666666555554443
|
Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B. |
| >KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=90.85 E-value=0.15 Score=55.10 Aligned_cols=41 Identities=22% Similarity=0.549 Sum_probs=37.0
Q ss_pred ccccCCccccCC---ceecCCCCccchhhHHHHhhhCC--CCCCCC
Q 036199 269 FKCPLSLRLMYD---PVVIESGQTFERMWIQKWFEEGN--HTCPKT 309 (710)
Q Consensus 269 f~CPI~~~~m~D---PV~~~~G~ty~r~~I~~w~~~g~--~~cP~t 309 (710)
|.|||..+-=.| |+.++|||..+|.+|.+-...|. ..||.|
T Consensus 335 F~CPVlKeqtsdeNPPm~L~CGHVISkdAlnrLS~ng~~sfKCPYC 380 (394)
T KOG2817|consen 335 FICPVLKEQTSDENPPMMLICGHVISKDALNRLSKNGSQSFKCPYC 380 (394)
T ss_pred eecccchhhccCCCCCeeeeccceecHHHHHHHhhCCCeeeeCCCC
Confidence 899999998777 99999999999999999988777 668887
|
|
| >KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=90.61 E-value=12 Score=44.52 Aligned_cols=98 Identities=18% Similarity=0.264 Sum_probs=63.7
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHhccCcccccccccccchhchHHhh--cCchHHHHHHHHHHHHhc--CcchHHHH---
Q 036199 511 SILNMLDSPNGKFQELAIKILHNLSSDVDIQSHIAPSEFLPKLVPFL--KDATLAVSCLVILKNMCN--TEHARVCV--- 583 (710)
Q Consensus 511 ~LV~LL~~~~~~~~~~A~~aL~nLs~~~en~~~iv~aG~V~~Lv~lL--~~~~~~~~al~iL~nLa~--~~e~r~~i--- 583 (710)
.+++.|++.|...++.|+..++.|. +..|...| +.-|+.+| .+++....+..-+..++. .|+.+..|
T Consensus 354 tIleCL~DpD~SIkrralELs~~lv-n~~Nv~~m-----v~eLl~fL~~~d~~~k~~~as~I~~laEkfaP~k~W~idtm 427 (866)
T KOG1062|consen 354 TILECLKDPDVSIKRRALELSYALV-NESNVRVM-----VKELLEFLESSDEDFKADIASKIAELAEKFAPDKRWHIDTM 427 (866)
T ss_pred HHHHHhcCCcHHHHHHHHHHHHHHh-ccccHHHH-----HHHHHHHHHhccHHHHHHHHHHHHHHHHhcCCcchhHHHHH
Confidence 4667778888888888888888776 44554444 34566666 356677777777777776 45555433
Q ss_pred ---Hhh------cCChHHHHHHhhcCCHHHHHHHHHHHHH
Q 036199 584 ---VET------SGCLPSVAELLEIGSEEDQEHAVAILLC 614 (710)
Q Consensus 584 ---~~~------~g~I~~Lv~lL~~~s~~~ke~A~~aL~~ 614 (710)
..+ ...+..++.++.++.++..+.++..|+.
T Consensus 428 l~Vl~~aG~~V~~dv~~nll~LIa~~~~e~~~y~~~rLy~ 467 (866)
T KOG1062|consen 428 LKVLKTAGDFVNDDVVNNLLRLIANAFQELHEYAVLRLYL 467 (866)
T ss_pred HHHHHhcccccchhhHHHHHHHHhcCCcchhhHHHHHHHH
Confidence 222 2357788888887766666666665544
|
|
| >PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10 | Back alignment and domain information |
|---|
Probab=89.78 E-value=0.88 Score=40.52 Aligned_cols=62 Identities=19% Similarity=0.150 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHhCCchHHHHHH--hhcCCHHHHHHHHHHHHHhhhccCCccc
Q 036199 605 QEHAVAILLCLCSQRDQYCKLVMNEGVIPSLVKI--SVYGNDKAKVSALELRRLLRDVAYSVEQ 666 (710)
Q Consensus 605 ke~A~~aL~~Lc~~~~~~~~~v~~~G~v~~Lv~L--~~~gt~~~k~kA~~LL~~l~~~~~~~~~ 666 (710)
|...+.++.+||..+..++..+.+.|++|.++.. ..+.+|-.|+-|...++.|.+.-..++.
T Consensus 3 K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~eNQ~ 66 (102)
T PF09759_consen 3 KRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPENQE 66 (102)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHHHHH
Confidence 5567889999999999999999999999999887 5667899999999999999877655543
|
Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region []. |
| >KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=89.29 E-value=3.2 Score=47.97 Aligned_cols=170 Identities=7% Similarity=0.034 Sum_probs=112.4
Q ss_pred CCcHHHHHHHhhccccCCCHHHHHHHHHHHHHHhccCCCCC---ccc--cccchHHHHHHhccCcHH--HHHHHHHHHhc
Q 036199 422 TNFVEPLIRFLRDARDLHDSRAQRIGCRLLLAFVSKNRSGI---PYL--NEDLFSLLASFLHSAAAT--EETLAILVALS 494 (710)
Q Consensus 422 ~G~I~~LV~lL~s~~~~~d~~~q~~A~~~L~nL~~~~~~k~---~i~--~~gaI~~LV~lL~s~~~~--~~Aa~~L~~Ls 494 (710)
+..+|.|..+|.+ +|...++-|..+|.++..+..... ..- -.-.||.++.+.++++.. ..|++.+--..
T Consensus 127 pelLp~L~~~L~s----~d~n~~EgA~~AL~KIcEDsa~~lds~~~~rpl~~mipkfl~f~~h~spkiRs~A~~cvNq~i 202 (885)
T KOG2023|consen 127 PELLPQLCELLDS----PDYNTCEGAFGALQKICEDSAQFLDSDVLTRPLNIMIPKFLQFFKHPSPKIRSHAVGCVNQFI 202 (885)
T ss_pred hhHHHHHHHHhcC----CcccccchhHHHHHHHHhhhHHHHhhhcccCchHHhHHHHHHHHhCCChhHHHHHHhhhhhee
Confidence 4578899999987 778889999999999865441100 000 123688899999888764 46666553222
Q ss_pred cCchhhHHHhh-hCcHHHHHHhhcCCCHHHHHHHHHHHHHhccCcccccccccccchhchHHhhc--CchHHHHHHHHHH
Q 036199 495 SYAYFISKIVA-SGALASILNMLDSPNGKFQELAIKILHNLSSDVDIQSHIAPSEFLPKLVPFLK--DATLAVSCLVILK 571 (710)
Q Consensus 495 ~~~~nk~~I~~-~GaI~~LV~LL~~~~~~~~~~A~~aL~nLs~~~en~~~iv~aG~V~~Lv~lL~--~~~~~~~al~iL~ 571 (710)
.. .+...+.. ...+..|..+-.+.+++++++.+.+|.-|......+..=.=.++|..++..-. ++++.-+|+....
T Consensus 203 ~~-~~qal~~~iD~Fle~lFalanD~~~eVRk~vC~alv~Llevr~dkl~phl~~IveyML~~tqd~dE~VALEACEFwl 281 (885)
T KOG2023|consen 203 II-QTQALYVHIDKFLEILFALANDEDPEVRKNVCRALVFLLEVRPDKLVPHLDNIVEYMLQRTQDVDENVALEACEFWL 281 (885)
T ss_pred ec-CcHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhcHHhcccchHHHHHHHHHHccCcchhHHHHHHHHHH
Confidence 11 12222222 23466677777888999999999999998854433322223567777777664 4578889999999
Q ss_pred HHhcCcchHHHHHhh-cCChHHHHHH
Q 036199 572 NMCNTEHARVCVVET-SGCLPSVAEL 596 (710)
Q Consensus 572 nLa~~~e~r~~i~~~-~g~I~~Lv~l 596 (710)
.+|..+-.+..+..+ ...||.|+.-
T Consensus 282 a~aeqpi~~~~L~p~l~kliPvLl~~ 307 (885)
T KOG2023|consen 282 ALAEQPICKEVLQPYLDKLIPVLLSG 307 (885)
T ss_pred HHhcCcCcHHHHHHHHHHHHHHHHcc
Confidence 999988777777553 2455666553
|
|
| >KOG1788 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=88.75 E-value=6 Score=47.87 Aligned_cols=246 Identities=14% Similarity=0.154 Sum_probs=149.3
Q ss_pred HHHHHHHccCcccchhcccCCcHHHHHHHhhccccCCCHHHHHHHHHHHHHHhccCCCCCccccccchHHHHHHhccCcH
Q 036199 403 EDYETRLEHDNQVSHSLSSTNFVEPLIRFLRDARDLHDSRAQRIGCRLLLAFVSKNRSGIPYLNEDLFSLLASFLHSAAA 482 (710)
Q Consensus 403 ~~L~~Lak~~~~~r~~I~~~G~I~~LV~lL~s~~~~~d~~~q~~A~~~L~nL~~~~~~k~~i~~~gaI~~LV~lL~s~~~ 482 (710)
..|..+.|.+.+|...+.+..++..++.+|-+ .+.+..-+.++..+...+. +. ++..-+-.+|..|++|..
T Consensus 664 DcLisllKnnteNqklFreanGvklilpflin------dehRSslLrivscLitvdp-kq--vhhqelmalVdtLksgmv 734 (2799)
T KOG1788|consen 664 DCLISLLKNNTENQKLFREANGVKLILPFLIN------DEHRSSLLRIVSCLITVDP-KQ--VHHQELMALVDTLKSGMV 734 (2799)
T ss_pred HHHHHHHhccchhhHHHHhhcCceEEEEeeec------hHHHHHHHHHHHHHhccCc-cc--ccHHHHHHHHHHHHhcce
Confidence 45677889999999999999888888888855 2223233334444433222 22 355678889999998643
Q ss_pred H-------H-------HHHHHHHHhc-cCchhhHHHhhhCcHHHHHHhhc----------CCCHHHHHHHHHHHHHh---
Q 036199 483 T-------E-------ETLAILVALS-SYAYFISKIVASGALASILNMLD----------SPNGKFQELAIKILHNL--- 534 (710)
Q Consensus 483 ~-------~-------~Aa~~L~~Ls-~~~~nk~~I~~~GaI~~LV~LL~----------~~~~~~~~~A~~aL~nL--- 534 (710)
. + ...++++..- .+...+..++++|+...|...|. .+|...--.-...||.+
T Consensus 735 t~IsgeqyklhfsllcdlmGalwrivgvngsaqrvFgeatGFslLlttLhtfqgftelhdesDlcvyiklfkilFrlfTl 814 (2799)
T KOG1788|consen 735 TRISGEQYKLHFSLLCDLMGALWRIVGVNGSAQRVFGEATGFSLLLTTLHTFQGFTELHDESDLCVYIKLFKILFRLFTL 814 (2799)
T ss_pred eccchhHHHHHHHHHHHHHHHHHHHHccCchheeehhccccHHHHHHHHHHhccchhcCCchhhhhHHHHHHHHHHHHHH
Confidence 1 1 2345555544 56678888899999988887772 22322222333444433
Q ss_pred --ccCccccccccc---ccchhchHHh---------------h--------cCchHHHH--HHHHHHHHhc------Cc-
Q 036199 535 --SSDVDIQSHIAP---SEFLPKLVPF---------------L--------KDATLAVS--CLVILKNMCN------TE- 577 (710)
Q Consensus 535 --s~~~en~~~iv~---aG~V~~Lv~l---------------L--------~~~~~~~~--al~iL~nLa~------~~- 577 (710)
+.++.|+..+.. ..-+..|+.. | ..+.++.+ |++-+-.+-. .|
T Consensus 815 avcenasNrmklhtvITsqtftsLLresgllcvnler~viqlllElalevlvppfLtSEsaAcaeVfelednifavntPs 894 (2799)
T KOG1788|consen 815 AVCENASNRMKLHTVITSQTFTSLLRESGLLCVNLERHVIQLLLELALEVLVPPFLTSESAACAEVFELEDNIFAVNTPS 894 (2799)
T ss_pred HHhhcchhhhheeeeeeHHHHHHHHHHhccceecchHHHHHHHHHHHHHhhCCchhhhhHHHHHHHhhcccceeeeccCC
Confidence 346667654321 1111111111 1 11222111 1221211111 11
Q ss_pred ----chHHHHHhhcCChHHHHHHhhcCCHHHHHHHHHHHHHHhcCChHHHHHHHhCCchHHHHHH---hhcCCHHHHHHH
Q 036199 578 ----HARVCVVETSGCLPSVAELLEIGSEEDQEHAVAILLCLCSQRDQYCKLVMNEGVIPSLVKI---SVYGNDKAKVSA 650 (710)
Q Consensus 578 ----e~r~~i~~~~g~I~~Lv~lL~~~s~~~ke~A~~aL~~Lc~~~~~~~~~v~~~G~v~~Lv~L---~~~gt~~~k~kA 650 (710)
..++.|.. +|++..|+..+....|+.|-.-+..|-+++.-++.+....-..|.++.|+++ ..+|+.---..|
T Consensus 895 Gqfnpdk~~iyn-agavRvlirslLlnypK~qlefl~lleSlaRaspfnaelltS~gcvellleIiypflsgsspfLsha 973 (2799)
T KOG1788|consen 895 GQFNPDKQKIYN-AGAVRVLIRSLLLNYPKLQLEFLNLLESLARASPFNAELLTSAGCVELLLEIIYPFLSGSSPFLSHA 973 (2799)
T ss_pred CCcCchHhhhcc-cchhHHHHHHHHhhChHHHHHHHHHHHHHhhcCCCchhhhhcccHHHHHHHHhhhhhcCCchHhhcc
Confidence 23566777 7999999999988999999999999999999888888888888999988887 344544444455
Q ss_pred HHHHHHhh
Q 036199 651 LELRRLLR 658 (710)
Q Consensus 651 ~~LL~~l~ 658 (710)
.+++.+|.
T Consensus 974 lkIvemLg 981 (2799)
T KOG1788|consen 974 LKIVEMLG 981 (2799)
T ss_pred HHHHHHHh
Confidence 55555443
|
|
| >KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=88.11 E-value=7.6 Score=45.69 Aligned_cols=252 Identities=13% Similarity=0.138 Sum_probs=143.3
Q ss_pred CHHHHHHHHHHHHHHHcc------CcccchhcccCCcHHHHHHHhhccccCCCHHHHHHHHHHHHHHhc-cCCCCCcccc
Q 036199 394 NWDCQCKVIEDYETRLEH------DNQVSHSLSSTNFVEPLIRFLRDARDLHDSRAQRIGCRLLLAFVS-KNRSGIPYLN 466 (710)
Q Consensus 394 ~~e~q~~Al~~L~~Lak~------~~~~r~~I~~~G~I~~LV~lL~s~~~~~d~~~q~~A~~~L~nL~~-~~~~k~~i~~ 466 (710)
+..++..|+.+|..-..- ++..|..|.+ ..++.-. ++|.++|..|..+|..+.+ .-..-...+.
T Consensus 187 s~~vRLaa~~aL~nsLef~~~nF~~E~ern~iMq-----vvcEatq----~~d~~i~~aa~~ClvkIm~LyY~~m~~yM~ 257 (859)
T KOG1241|consen 187 SAAVRLAALNALYNSLEFTKANFNNEMERNYIMQ-----VVCEATQ----SPDEEIQVAAFQCLVKIMSLYYEFMEPYME 257 (859)
T ss_pred chhHHHHHHHHHHHHHHHHHHhhccHhhhceeee-----eeeeccc----CCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445666677776544432 2333433321 1222222 3788999999999888743 2221122234
Q ss_pred ccchHHHHHHhccCcHHHHHHHHHH---HhccC--c----------hhh----HHHh---hhCcHHHHHHhhcC--CCH-
Q 036199 467 EDLFSLLASFLHSAAATEETLAILV---ALSSY--A----------YFI----SKIV---ASGALASILNMLDS--PNG- 521 (710)
Q Consensus 467 ~gaI~~LV~lL~s~~~~~~Aa~~L~---~Ls~~--~----------~nk----~~I~---~~GaI~~LV~LL~~--~~~- 521 (710)
...+..-+.-.++.+. +-|..++. +++.. + .+. ..+. -.+.+|.|+++|.. ++.
T Consensus 258 ~alfaitl~amks~~d-eValQaiEFWsticeEEiD~~~e~~e~~d~~~~p~~~~fa~~a~~~v~P~Ll~~L~kqde~~d 336 (859)
T KOG1241|consen 258 QALFAITLAAMKSDND-EVALQAIEFWSTICEEEIDLAIEYGEAVDQGLPPSSKYFARQALQDVVPVLLELLTKQDEDDD 336 (859)
T ss_pred HHHHHHHHHHHcCCcH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhHHHHHHHhHhhHHHHHHHHhCCCCcc
Confidence 4455555555666554 33444432 23211 0 011 1111 14778899999842 111
Q ss_pred ----HHHHHHHHHHHHhccCcccccccccccchhchHHhh----cCchH--HHHHHHHHHHHhcCcc--hHHHHHhhcCC
Q 036199 522 ----KFQELAIKILHNLSSDVDIQSHIAPSEFLPKLVPFL----KDATL--AVSCLVILKNMCNTEH--ARVCVVETSGC 589 (710)
Q Consensus 522 ----~~~~~A~~aL~nLs~~~en~~~iv~aG~V~~Lv~lL----~~~~~--~~~al~iL~nLa~~~e--~r~~i~~~~g~ 589 (710)
...+.|..+|.-++. .+.-.+||+.+.++ .++++ .+.|+.++..+-..++ ....++. ++
T Consensus 337 ~DdWnp~kAAg~CL~l~A~-------~~~D~Iv~~Vl~Fiee~i~~pdwr~reaavmAFGSIl~gp~~~~Lt~iV~--qa 407 (859)
T KOG1241|consen 337 DDDWNPAKAAGVCLMLFAQ-------CVGDDIVPHVLPFIEENIQNPDWRNREAAVMAFGSILEGPEPDKLTPIVI--QA 407 (859)
T ss_pred cccCcHHHHHHHHHHHHHH-------HhcccchhhhHHHHHHhcCCcchhhhhHHHHHHHhhhcCCchhhhhHHHh--hh
Confidence 345556666655553 23345667777776 45666 5556656665555433 3345554 78
Q ss_pred hHHHHHHhhcCCHHHHHHHHHHHHHHhcCChHH-HHHHHhCCchHHHHHHhhcCCHHHHHHHHHHHHHhhhccCCcc
Q 036199 590 LPSVAELLEIGSEEDQEHAVAILLCLCSQRDQY-CKLVMNEGVIPSLVKISVYGNDKAKVSALELRRLLRDVAYSVE 665 (710)
Q Consensus 590 I~~Lv~lL~~~s~~~ke~A~~aL~~Lc~~~~~~-~~~v~~~G~v~~Lv~L~~~gt~~~k~kA~~LL~~l~~~~~~~~ 665 (710)
+|.++.++...+-.+++.+.|.|..+|..-++. .....-.+.++.|+.=+ +..+|.-.++.|.+--|.++-+.-.
T Consensus 408 lp~ii~lm~D~sl~VkdTaAwtlgrI~d~l~e~~~n~~~l~~~l~~l~~gL-~DePrva~N~CWAf~~Laea~~eA~ 483 (859)
T KOG1241|consen 408 LPSIINLMSDPSLWVKDTAAWTLGRIADFLPEAIINQELLQSKLSALLEGL-NDEPRVASNVCWAFISLAEAAYEAA 483 (859)
T ss_pred hHHHHHHhcCchhhhcchHHHHHHHHHhhchhhcccHhhhhHHHHHHHHHh-hhCchHHHHHHHHHHHHHHHHHHhc
Confidence 999999999888899999999999999887642 22223334444444333 3467888889998888876655433
|
|
| >PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function | Back alignment and domain information |
|---|
Probab=88.09 E-value=2.8 Score=41.86 Aligned_cols=90 Identities=14% Similarity=0.104 Sum_probs=68.5
Q ss_pred cccchHHHHHHhccCcH--------HHHHHHHHHHhccCchhhHHHhh--hCc--HHHHHHhhcCCCHHHHHHHHHHHHH
Q 036199 466 NEDLFSLLASFLHSAAA--------TEETLAILVALSSYAYFISKIVA--SGA--LASILNMLDSPNGKFQELAIKILHN 533 (710)
Q Consensus 466 ~~gaI~~LV~lL~s~~~--------~~~Aa~~L~~Ls~~~~nk~~I~~--~Ga--I~~LV~LL~~~~~~~~~~A~~aL~n 533 (710)
+...+..|+..+..|.. ....+.+|.|++..++.|..+.. .+. |..|+..+.+.+..-+.-++++|.|
T Consensus 50 ~~~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl~NlS~~~~gR~~~l~~~~~~~~l~kLl~ft~~~s~iRR~Gva~~IrN 129 (192)
T PF04063_consen 50 SGFYLDKLLDLFVKGADPSYNKKDNYDYLASVLANLSQLPEGRQFFLDPQRYDGPLQKLLPFTEHKSVIRRGGVAGTIRN 129 (192)
T ss_pred hHHHHHHHHHHHHcCCcccCCCCcchhHHHHHHHHhcCCHHHHHHHhCchhhhhHHHHHHHHhccCcHHHHHHHHHHHHH
Confidence 45677888887765321 25789999999999999999996 344 6777777777788888999999999
Q ss_pred hccCcccccccccc---cchhchHH
Q 036199 534 LSSDVDIQSHIAPS---EFLPKLVP 555 (710)
Q Consensus 534 Ls~~~en~~~iv~a---G~V~~Lv~ 555 (710)
+|...+....+... +++|.|+-
T Consensus 130 ccFd~~~H~~LL~~~~~~iLp~LLl 154 (192)
T PF04063_consen 130 CCFDTDSHEWLLSDDEVDILPYLLL 154 (192)
T ss_pred hhccHhHHHHhcCchhhhhHHHHHh
Confidence 99999888877763 44444433
|
It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO). |
| >PF02891 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR004181 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule | Back alignment and domain information |
|---|
Probab=88.06 E-value=0.44 Score=36.64 Aligned_cols=45 Identities=20% Similarity=0.349 Sum_probs=23.8
Q ss_pred cccccCCccccCCceec-CCCC--ccchhh-HHHHhhhCCCCCCCCCCc
Q 036199 268 VFKCPLSLRLMYDPVVI-ESGQ--TFERMW-IQKWFEEGNHTCPKTKMK 312 (710)
Q Consensus 268 ~f~CPI~~~~m~DPV~~-~~G~--ty~r~~-I~~w~~~g~~~cP~t~~~ 312 (710)
.+.||||...|.-||-. .|.| .||-.. |+.....+.-.||.|+++
T Consensus 2 sL~CPls~~~i~~P~Rg~~C~H~~CFDl~~fl~~~~~~~~W~CPiC~~~ 50 (50)
T PF02891_consen 2 SLRCPLSFQRIRIPVRGKNCKHLQCFDLESFLESNQRTPKWKCPICNKP 50 (50)
T ss_dssp ESB-TTTSSB-SSEEEETT--SS--EEHHHHHHHHHHS---B-TTT---
T ss_pred eeeCCCCCCEEEeCccCCcCcccceECHHHHHHHhhccCCeECcCCcCc
Confidence 36899999999999975 6765 477644 333344455679999864
|
Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MIZ-type zinc finger domains. Miz1 (Msx-interacting-zinc finger) is a zinc finger-containing protein with homology to the yeast protein, Nfi-1. Miz1 is a sequence specific DNA binding protein that can function as a positive-acting transcription factor. Miz1 binds to the homeobox protein Msx2, enhancing the specific DNA-binding ability of Msx2 []. Other proteins containing this domain include the human pias family (protein inhibitor of activated STAT protein). More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3I2D_A. |
| >KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=88.03 E-value=5.5 Score=46.16 Aligned_cols=259 Identities=14% Similarity=0.129 Sum_probs=148.3
Q ss_pred cchhhcCCCHHHHHHHHHHHHHHHccCcccchhccc-CCcHHHHHHHhhccccCCCHHHHHHHHHHHHHHhccCCCCCcc
Q 036199 386 DLSRLTELNWDCQCKVIEDYETRLEHDNQVSHSLSS-TNFVEPLIRFLRDARDLHDSRAQRIGCRLLLAFVSKNRSGIPY 464 (710)
Q Consensus 386 ~L~~L~s~~~e~q~~Al~~L~~Lak~~~~~r~~I~~-~G~I~~LV~lL~s~~~~~d~~~q~~A~~~L~nL~~~~~~k~~i 464 (710)
||...+..++..+..|+..+....-...+. .+.. ..+++.+..+-. ..+++++.+.+.+|.-+..-...|..-
T Consensus 179 fl~f~~h~spkiRs~A~~cvNq~i~~~~qa--l~~~iD~Fle~lFalan----D~~~eVRk~vC~alv~Llevr~dkl~p 252 (885)
T KOG2023|consen 179 FLQFFKHPSPKIRSHAVGCVNQFIIIQTQA--LYVHIDKFLEILFALAN----DEDPEVRKNVCRALVFLLEVRPDKLVP 252 (885)
T ss_pred HHHHHhCCChhHHHHHHhhhhheeecCcHH--HHHHHHHHHHHHHHHcc----CCCHHHHHHHHHHHHHHHHhcHHhccc
Confidence 445556667888888887775544332221 1111 234444444442 378999999999888875533334433
Q ss_pred ccccchHHHHHHhccCcHH--HHHHHHHHHhccCchhhHHHhh--hCcHHHHHHhhc-CC-CH-----------------
Q 036199 465 LNEDLFSLLASFLHSAAAT--EETLAILVALSSYAYFISKIVA--SGALASILNMLD-SP-NG----------------- 521 (710)
Q Consensus 465 ~~~gaI~~LV~lL~s~~~~--~~Aa~~L~~Ls~~~~nk~~I~~--~GaI~~LV~LL~-~~-~~----------------- 521 (710)
.-.++|+-++..-...+.. -+|+.....++..+-.+..+.. ...||.|+.-+. ++ +.
T Consensus 253 hl~~IveyML~~tqd~dE~VALEACEFwla~aeqpi~~~~L~p~l~kliPvLl~~M~Ysd~D~~LL~~~eeD~~vpDree 332 (885)
T KOG2023|consen 253 HLDNIVEYMLQRTQDVDENVALEACEFWLALAEQPICKEVLQPYLDKLIPVLLSGMVYSDDDIILLKNNEEDESVPDREE 332 (885)
T ss_pred chHHHHHHHHHHccCcchhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHccCccccccHHHhcCccccccCCchhh
Confidence 3356666666665544432 4788888888887766666654 467887775331 11 00
Q ss_pred -------------------------------------HHHHHHHHHHHHhccCcccccccccccchhchHHhh----cCc
Q 036199 522 -------------------------------------KFQELAIKILHNLSSDVDIQSHIAPSEFLPKLVPFL----KDA 560 (710)
Q Consensus 522 -------------------------------------~~~~~A~~aL~nLs~~~en~~~iv~aG~V~~Lv~lL----~~~ 560 (710)
..++..+.+|--|+ .+.....++.++.+| .++
T Consensus 333 DIkPRfhksk~~~~~~~~~~eDdddDe~DDdD~~~dWNLRkCSAAaLDVLa-------nvf~~elL~~l~PlLk~~L~~~ 405 (885)
T KOG2023|consen 333 DIKPRFHKSKEHGNGEDADDEDDDDDEDDDDDAFSDWNLRKCSAAALDVLA-------NVFGDELLPILLPLLKEHLSSE 405 (885)
T ss_pred hccchhhhchhccCccccccccccccccccccccccccHhhccHHHHHHHH-------HhhHHHHHHHHHHHHHHHcCcc
Confidence 01222233332222 122334556666665 334
Q ss_pred h--HHHHHHHHHHHHhcCcchHH-HHHhh-cCChHHHHHHhhcCCHHHHHHHHHHHHHHhcCChH-HHHHHHhCCchHHH
Q 036199 561 T--LAVSCLVILKNMCNTEHARV-CVVET-SGCLPSVAELLEIGSEEDQEHAVAILLCLCSQRDQ-YCKLVMNEGVIPSL 635 (710)
Q Consensus 561 ~--~~~~al~iL~nLa~~~e~r~-~i~~~-~g~I~~Lv~lL~~~s~~~ke~A~~aL~~Lc~~~~~-~~~~v~~~G~v~~L 635 (710)
+ ++|.++-+|+.+|. |.. -++.+ +..||-|+.+|....+-+|.-++|.|..-+..-.. .+.... .-++..|
T Consensus 406 ~W~vrEagvLAlGAIAE---GcM~g~~p~LpeLip~l~~~L~DKkplVRsITCWTLsRys~wv~~~~~~~~f-~pvL~~l 481 (885)
T KOG2023|consen 406 EWKVREAGVLALGAIAE---GCMQGFVPHLPELIPFLLSLLDDKKPLVRSITCWTLSRYSKWVVQDSRDEYF-KPVLEGL 481 (885)
T ss_pred hhhhhhhhHHHHHHHHH---HHhhhcccchHHHHHHHHHHhccCccceeeeeeeeHhhhhhhHhcCChHhhh-HHHHHHH
Confidence 4 36666666667664 222 22221 23578888889888999999999998665432100 011111 0123444
Q ss_pred HHHhhcCCHHHHHHHHHHHHHhhhcc
Q 036199 636 VKISVYGNDKAKVSALELRRLLRDVA 661 (710)
Q Consensus 636 v~L~~~gt~~~k~kA~~LL~~l~~~~ 661 (710)
+.-+-+++.++++.|...+..|-+..
T Consensus 482 l~~llD~NK~VQEAAcsAfAtleE~A 507 (885)
T KOG2023|consen 482 LRRLLDSNKKVQEAACSAFATLEEEA 507 (885)
T ss_pred HHHHhcccHHHHHHHHHHHHHHHHhc
Confidence 55577899999999999888776543
|
|
| >KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=87.97 E-value=19 Score=43.65 Aligned_cols=261 Identities=15% Similarity=0.160 Sum_probs=141.4
Q ss_pred hhhcCCCHHHHHHHHHHHHHHHccCcccchhcccCCcHHHHHHHhhccccCCCHHHHHHHHHHHHHHhccCCCCCccccc
Q 036199 388 SRLTELNWDCQCKVIEDYETRLEHDNQVSHSLSSTNFVEPLIRFLRDARDLHDSRAQRIGCRLLLAFVSKNRSGIPYLNE 467 (710)
Q Consensus 388 ~~L~s~~~e~q~~Al~~L~~Lak~~~~~r~~I~~~G~I~~LV~lL~s~~~~~d~~~q~~A~~~L~nL~~~~~~k~~i~~~ 467 (710)
.++.+.+-+.+.-|...|-.-..++.-+-..=.+...+..++++|.. .+.++|-.|+.+|.-+++. +..
T Consensus 12 ekmtssDKDfRfMAtsDLm~eLqkdsi~Ld~dSe~kvv~~lLklL~D----~ngEVQnlAVKClg~lvsK-------vke 80 (1233)
T KOG1824|consen 12 EKMTSSDKDFRFMATSDLMTELQKDSIKLDDDSERKVVKMLLKLLED----KNGEVQNLAVKCLGPLVSK-------VKE 80 (1233)
T ss_pred HHccCCCcchhhhhHHHHHHHHHhhhhhccccchhHHHHHHHHHHhc----cCcHHHHHHHHHHHHHHhh-------chH
Confidence 56666777777777777654443332222222445678889999987 6899999999999988632 233
Q ss_pred cchHHHHHHhccC----cHH---HHHHHHHHHhccCchhhHHHhhhCcHHH----HHHhhc--CCCHHHHHHHHHHHHHh
Q 036199 468 DLFSLLASFLHSA----AAT---EETLAILVALSSYAYFISKIVASGALAS----ILNMLD--SPNGKFQELAIKILHNL 534 (710)
Q Consensus 468 gaI~~LV~lL~s~----~~~---~~Aa~~L~~Ls~~~~nk~~I~~~GaI~~----LV~LL~--~~~~~~~~~A~~aL~nL 534 (710)
.-+..+|+-|-++ ..+ ..+.+.....+...........+.+.+. |+.-+. .+...++-.++..|...
T Consensus 81 ~~le~~ve~L~~~~~s~keq~rdissi~Lktvi~nl~P~~~~~la~tV~~~~t~~l~~~i~~qe~~sai~~e~lDil~d~ 160 (1233)
T KOG1824|consen 81 DQLETIVENLCSNMLSGKEQLRDISSIGLKTVIANLPPSSSSFLAATVCKRITPKLKQAISKQEDVSAIKCEVLDILADV 160 (1233)
T ss_pred HHHHHHHHHHhhhhccchhhhccHHHHHHHHHHhcCCCccccccccHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHH
Confidence 3455555554433 111 1344333333322211111122223333 333331 22233555555555544
Q ss_pred ccCcccccccccccchhchHHhhcCc--hHHHHHHHHHHHHhcCcchHHHHHhhcCChHHHHHHhhc-CCHHHHHHHHHH
Q 036199 535 SSDVDIQSHIAPSEFLPKLVPFLKDA--TLAVSCLVILKNMCNTEHARVCVVETSGCLPSVAELLEI-GSEEDQEHAVAI 611 (710)
Q Consensus 535 s~~~en~~~iv~aG~V~~Lv~lL~~~--~~~~~al~iL~nLa~~~e~r~~i~~~~g~I~~Lv~lL~~-~s~~~ke~A~~a 611 (710)
-+.-..-.-=...+....++.-+..+ .++.+|+.+|+.|+..-. +.... +.|..|++-|.. .++..-.--+.+
T Consensus 161 lsr~g~ll~~fh~~il~~l~~ql~s~R~aVrKkai~~l~~la~~~~-~~ly~---~li~~Ll~~L~~~~q~~~~rt~Iq~ 236 (1233)
T KOG1824|consen 161 LSRFGTLLPNFHLSILKCLLPQLQSPRLAVRKKAITALGHLASSCN-RDLYV---ELIEHLLKGLSNRTQMSATRTYIQC 236 (1233)
T ss_pred HHhhcccCcchHHHHHHHHhhcccChHHHHHHHHHHHHHHHHHhcC-HHHHH---HHHHHHHhccCCCCchHHHHHHHHH
Confidence 32211111113455666666666554 468899999999987322 22222 235555555543 344444455566
Q ss_pred HHHHhcCChHHHHHHHhCCchHHHHHHh---hcCCHHHHHHHHHHHHHhhhccCCc
Q 036199 612 LLCLCSQRDQYCKLVMNEGVIPSLVKIS---VYGNDKAKVSALELRRLLRDVAYSV 664 (710)
Q Consensus 612 L~~Lc~~~~~~~~~v~~~G~v~~Lv~L~---~~gt~~~k~kA~~LL~~l~~~~~~~ 664 (710)
|..+|.... .+.--.-.-++|.+.+.. ....++.|++....+..|-...+.+
T Consensus 237 l~~i~r~ag-~r~~~h~~~ivp~v~~y~~~~e~~dDELrE~~lQale~fl~rcp~e 291 (1233)
T KOG1824|consen 237 LAAICRQAG-HRFGSHLDKIVPLVADYCNKIEEDDDELREYCLQALESFLRRCPKE 291 (1233)
T ss_pred HHHHHHHhc-chhhcccchhhHHHHHHhcccccCcHHHHHHHHHHHHHHHHhChhh
Confidence 666665541 111112223577777776 6778889999999998665444443
|
|
| >PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis | Back alignment and domain information |
|---|
Probab=87.78 E-value=14 Score=40.28 Aligned_cols=155 Identities=16% Similarity=0.163 Sum_probs=119.4
Q ss_pred HHhhhCcHHHHHHhhcCCCHHHHHHHHHHHHHhccCc-cccc-----ccc-c-ccchhchHHhhcCchHHHHHHHHHHHH
Q 036199 502 KIVASGALASILNMLDSPNGKFQELAIKILHNLSSDV-DIQS-----HIA-P-SEFLPKLVPFLKDATLAVSCLVILKNM 573 (710)
Q Consensus 502 ~I~~~GaI~~LV~LL~~~~~~~~~~A~~aL~nLs~~~-en~~-----~iv-~-aG~V~~Lv~lL~~~~~~~~al~iL~nL 573 (710)
.+...+.+..|+..|..-+-+++++++.+..++.... +++. .+. . ..++..|+.--.++++.-.|-.+|+..
T Consensus 71 Ei~~~dll~~Li~~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy~~~dial~~g~mlRec 150 (335)
T PF08569_consen 71 EIYRSDLLYLLIRNLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGYENPDIALNCGDMLREC 150 (335)
T ss_dssp HHHHHTHHHHHHHTGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGGGSTTTHHHHHHHHHHH
T ss_pred HHHHhCHHHHHHHHhhhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHhcCccccchHHHHHHHH
Confidence 4456789999999999999999999999999998643 3332 222 2 345555555557788999999999999
Q ss_pred hcCcchHHHHHhhcCChHHHHHHhhcCCHHHHHHHHHHHHHHhcCChHHHHHHHhCC---chHHHHHHhhcCCHHHHHHH
Q 036199 574 CNTEHARVCVVETSGCLPSVAELLEIGSEEDQEHAVAILLCLCSQRDQYCKLVMNEG---VIPSLVKISVYGNDKAKVSA 650 (710)
Q Consensus 574 a~~~e~r~~i~~~~g~I~~Lv~lL~~~s~~~ke~A~~aL~~Lc~~~~~~~~~v~~~G---~v~~Lv~L~~~gt~~~k~kA 650 (710)
+.++.-...|.. ...+..+.+.+..++-++...|...+..+-..+.......+... .+.....|+.+++--+|+.+
T Consensus 151 ~k~e~l~~~iL~-~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~NYvtkrqs 229 (335)
T PF08569_consen 151 IKHESLAKIILY-SECFWKFFKYVQLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESSNYVTKRQS 229 (335)
T ss_dssp TTSHHHHHHHHT-SGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-SSHHHHHHH
T ss_pred HhhHHHHHHHhC-cHHHHHHHHHhcCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCCeEeehhh
Confidence 999887778887 67899999999999999999999999887777655555555443 35677888999999999999
Q ss_pred HHHHHHh
Q 036199 651 LELRRLL 657 (710)
Q Consensus 651 ~~LL~~l 657 (710)
.+||.-+
T Consensus 230 lkLL~el 236 (335)
T PF08569_consen 230 LKLLGEL 236 (335)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9999833
|
In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A. |
| >smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins | Back alignment and domain information |
|---|
Probab=87.65 E-value=0.56 Score=35.90 Aligned_cols=41 Identities=27% Similarity=0.522 Sum_probs=31.1
Q ss_pred cccCCcc--ccCCceecCCC-----CccchhhHHHHhhh-CCCCCCCCC
Q 036199 270 KCPLSLR--LMYDPVVIESG-----QTFERMWIQKWFEE-GNHTCPKTK 310 (710)
Q Consensus 270 ~CPI~~~--~m~DPV~~~~G-----~ty~r~~I~~w~~~-g~~~cP~t~ 310 (710)
.|-||++ --.+|.+.+|. +-+=+.|+++|+.. +..+||.|+
T Consensus 1 ~CrIC~~~~~~~~~l~~PC~C~G~~~~vH~~Cl~~W~~~~~~~~C~iC~ 49 (49)
T smart00744 1 ICRICHDEGDEGDPLVSPCRCKGSLKYVHQECLERWINESGNKTCEICK 49 (49)
T ss_pred CccCCCCCCCCCCeeEeccccCCchhHHHHHHHHHHHHHcCCCcCCCCC
Confidence 3677775 45678888875 56889999999974 567899984
|
Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class |
| >KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=87.30 E-value=6.8 Score=46.35 Aligned_cols=145 Identities=14% Similarity=0.131 Sum_probs=77.8
Q ss_pred cHHHHHHHhhccccCCCHHHHHHHHHHHHHHhccCCCCCccccccchHHHHHHhccCcH--HHHHHHHHHHh-ccCc---
Q 036199 424 FVEPLIRFLRDARDLHDSRAQRIGCRLLLAFVSKNRSGIPYLNEDLFSLLASFLHSAAA--TEETLAILVAL-SSYA--- 497 (710)
Q Consensus 424 ~I~~LV~lL~s~~~~~d~~~q~~A~~~L~nL~~~~~~k~~i~~~gaI~~LV~lL~s~~~--~~~Aa~~L~~L-s~~~--- 497 (710)
.+-.+++.|+++..+.+.-++-.|+.+|.++++.+ +..+..|.+.++|++.+. ++.|+-++..+ -..+
T Consensus 104 vllLltNslknDL~s~nq~vVglAL~alg~i~s~E------mardlapeVe~Ll~~~~~~irKKA~Lca~r~irK~P~l~ 177 (866)
T KOG1062|consen 104 LLLLLTNSLKNDLNSSNQYVVGLALCALGNICSPE------MARDLAPEVERLLQHRDPYIRKKAALCAVRFIRKVPDLV 177 (866)
T ss_pred HHHHHHHHHHhhccCCCeeehHHHHHHhhccCCHH------HhHHhhHHHHHHHhCCCHHHHHHHHHHHHHHHHcCchHH
Confidence 34456667776666677777888888888885543 345667888888887665 33443333322 2222
Q ss_pred -----hhhHHHhh--hC----cHHHHHHhhcCCC------HHHHHHHHHHHHHhccCccccccccc-ccchhch------
Q 036199 498 -----YFISKIVA--SG----ALASILNMLDSPN------GKFQELAIKILHNLSSDVDIQSHIAP-SEFLPKL------ 553 (710)
Q Consensus 498 -----~nk~~I~~--~G----aI~~LV~LL~~~~------~~~~~~A~~aL~nLs~~~en~~~iv~-aG~V~~L------ 553 (710)
..+..+-+ .| ++..+.+++..+. ......-...|.++....=... .+ +|+-.|.
T Consensus 178 e~f~~~~~~lL~ek~hGVL~~~l~l~~e~c~~~~~~l~~fr~l~~~lV~iLk~l~~~~yspe--ydv~gi~dPFLQi~iL 255 (866)
T KOG1062|consen 178 EHFVIAFRKLLCEKHHGVLIAGLHLITELCKISPDALSYFRDLVPSLVKILKQLTNSGYSPE--YDVHGISDPFLQIRIL 255 (866)
T ss_pred HHhhHHHHHHHhhcCCceeeeHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhcCCCCCc--cCccCCCchHHHHHHH
Confidence 23333332 33 3455555554432 1234455566666653110000 11 2333332
Q ss_pred --HHhh--cCchHHHHHHHHHHHHhcC
Q 036199 554 --VPFL--KDATLAVSCLVILKNMCNT 576 (710)
Q Consensus 554 --v~lL--~~~~~~~~al~iL~nLa~~ 576 (710)
+++| .+++..+...-+|+.++++
T Consensus 256 rlLriLGq~d~daSd~M~DiLaqvatn 282 (866)
T KOG1062|consen 256 RLLRILGQNDADASDLMNDILAQVATN 282 (866)
T ss_pred HHHHHhcCCCccHHHHHHHHHHHHHhc
Confidence 2233 3566777778888888774
|
|
| >COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=86.87 E-value=0.57 Score=39.08 Aligned_cols=43 Identities=26% Similarity=0.509 Sum_probs=32.1
Q ss_pred cccCCccccC----Cceec-CCCCccchhhHHHHhhhCCCCCCCCCCcc
Q 036199 270 KCPLSLRLMY----DPVVI-ESGQTFERMWIQKWFEEGNHTCPKTKMKL 313 (710)
Q Consensus 270 ~CPI~~~~m~----DPV~~-~~G~ty~r~~I~~w~~~g~~~cP~t~~~l 313 (710)
.||-|.--|. =||+. .|.|.|--+||.+|++. ...||..+|+.
T Consensus 33 ~C~eCq~~~~~~~eC~v~wG~CnHaFH~HCI~rWL~T-k~~CPld~q~w 80 (88)
T COG5194 33 TCPECQFGMTPGDECPVVWGVCNHAFHDHCIYRWLDT-KGVCPLDRQTW 80 (88)
T ss_pred cCcccccCCCCCCcceEEEEecchHHHHHHHHHHHhh-CCCCCCCCcee
Confidence 4666655441 13443 89999999999999996 66899999874
|
|
| >KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown] | Back alignment and domain information |
|---|
Probab=86.79 E-value=10 Score=42.44 Aligned_cols=115 Identities=17% Similarity=0.304 Sum_probs=85.0
Q ss_pred hhhHHHhhhCcHHHHHHhhcCCC-------HHHHHHHHHHHHHhccCcccc--cccccccchhchHHhhc---Cch----
Q 036199 498 YFISKIVASGALASILNMLDSPN-------GKFQELAIKILHNLSSDVDIQ--SHIAPSEFLPKLVPFLK---DAT---- 561 (710)
Q Consensus 498 ~nk~~I~~~GaI~~LV~LL~~~~-------~~~~~~A~~aL~nLs~~~en~--~~iv~aG~V~~Lv~lL~---~~~---- 561 (710)
.||..+.++-+.+.+=++|.+++ .--+.-++..|...|..++-. ..|+ ..||.|..+++ +++
T Consensus 47 ~~kk~vfeAVGf~Fl~rLl~tk~~p~dcpd~Vy~~i~itvLacFC~~pElAsh~~~v--~~IP~llev~~~~~d~d~e~~ 124 (698)
T KOG2611|consen 47 LNKKLVFEAVGFHFLDRLLRTKSGPGDCPDDVYLQISITVLACFCRVPELASHEEMV--SRIPLLLEVMSKGIDTDYEDN 124 (698)
T ss_pred hhhhhHHHHhccchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHhCChhhccCHHHH--HhhhHHHHHHHhcCCCchhhh
Confidence 47888888888898889986442 234567788888889887654 3344 57999999993 233
Q ss_pred --HHHHHHHHHHHHhcCcchHHHHHhhcCChHHHHHHhhc-CCHHHHHHHHHHHHHH
Q 036199 562 --LAVSCLVILKNMCNTEHARVCVVETSGCLPSVAELLEI-GSEEDQEHAVAILLCL 615 (710)
Q Consensus 562 --~~~~al~iL~nLa~~~e~r~~i~~~~g~I~~Lv~lL~~-~s~~~ke~A~~aL~~L 615 (710)
+.+.|-..|...|+++.|...+.. .|+++.+.++-.. +-.-.++-|+.+|+-+
T Consensus 125 ~~m~~d~Y~cL~~Va~~e~G~~~Lia-~G~~~~~~Q~y~~~~~~~d~alal~Vlll~ 180 (698)
T KOG2611|consen 125 LIMLEDCYECLYLVATAEAGLMTLIA-SGGLRVIAQMYELPDGSHDMALALKVLLLL 180 (698)
T ss_pred HHHHHHHHHHHHHHhcCCchhHHHHh-cCchHHHHHHHhCCCCchhHHHHHHHHHHH
Confidence 689999999999999999999998 7999999986553 2333345555555444
|
|
| >KOG3161 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=86.30 E-value=0.35 Score=54.93 Aligned_cols=61 Identities=20% Similarity=0.392 Sum_probs=43.3
Q ss_pred CcccccCCcccc----CCceecCCCCccchhhHHHHhhhCCCCCCCCC--Cc--cCCCCCcccHHHHHHHHH
Q 036199 267 EVFKCPLSLRLM----YDPVVIESGQTFERMWIQKWFEEGNHTCPKTK--MK--LVCQSLTPNTAMKDLISK 330 (710)
Q Consensus 267 ~~f~CPI~~~~m----~DPV~~~~G~ty~r~~I~~w~~~g~~~cP~t~--~~--l~~~~l~pN~~l~~~i~~ 330 (710)
+-++|+||...| ..||.+-||||.|+.|.+.-+. .+||.-+ .. ....+.--|++|-+.+..
T Consensus 10 ~~l~c~ic~n~f~~~~~~Pvsl~cghtic~~c~~~lyn---~scp~~~De~~~~~~~~e~p~n~alL~~~~d 78 (861)
T KOG3161|consen 10 LLLLCDICLNLFVVQRLEPVSLQCGHTICGHCVQLLYN---ASCPTKRDEDSSLMQLKEEPRNYALLRREHD 78 (861)
T ss_pred HHhhchHHHHHHHHHhcCcccccccchHHHHHHHhHhh---ccCCCCccccchhcChhhcchhHHHHHhhcc
Confidence 457899997666 4799999999999999999874 4777221 11 122345568887776654
|
|
| >COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=86.16 E-value=20 Score=41.44 Aligned_cols=252 Identities=13% Similarity=0.067 Sum_probs=130.7
Q ss_pred cchhhcCCCHHHHHHHHHHHHHHHccCccc--chhcccCCcHHHHHHHhhccccCCCHHHHHHHHHHHHHHhc-cCCCCC
Q 036199 386 DLSRLTELNWDCQCKVIEDYETRLEHDNQV--SHSLSSTNFVEPLIRFLRDARDLHDSRAQRIGCRLLLAFVS-KNRSGI 462 (710)
Q Consensus 386 ~L~~L~s~~~e~q~~Al~~L~~Lak~~~~~--r~~I~~~G~I~~LV~lL~s~~~~~d~~~q~~A~~~L~nL~~-~~~~k~ 462 (710)
.|..|.+.+++++.+|+.....+++-=... -..+..-|.| |.+-| +..++++.-..+.++..+.+ +.-.+.
T Consensus 609 iL~~L~~k~p~vR~~aadl~~sl~~vlk~c~e~~~l~klg~i--LyE~l----ge~ypEvLgsil~Ai~~I~sv~~~~~m 682 (975)
T COG5181 609 ILKLLRSKPPDVRIRAADLMGSLAKVLKACGETKELAKLGNI--LYENL----GEDYPEVLGSILKAICSIYSVHRFRSM 682 (975)
T ss_pred HHHHhcCCCccHHHHHHHHHHHHHHHHHhcchHHHHHHHhHH--HHHhc----CcccHHHHHHHHHHHHHHhhhhccccc
Confidence 335567778888888877666555421100 1112222221 33333 33677777777777776633 322222
Q ss_pred ccccccchHHHHHHhccCcHH--HHHHHHHHHhccCchhhHHHhh-hCcHHHHHHhhcCCCHHHHHHHHHHHHHhccCcc
Q 036199 463 PYLNEDLFSLLASFLHSAAAT--EETLAILVALSSYAYFISKIVA-SGALASILNMLDSPNGKFQELAIKILHNLSSDVD 539 (710)
Q Consensus 463 ~i~~~gaI~~LV~lL~s~~~~--~~Aa~~L~~Ls~~~~nk~~I~~-~GaI~~LV~LL~~~~~~~~~~A~~aL~nLs~~~e 539 (710)
.---.|.+|.|.-+|++...+ .+..+.+..++.......-..+ -..--.||++|.+-+.+.+.+|..++..+|.
T Consensus 683 qpPi~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~rEWMRIcfeLvd~Lks~nKeiRR~A~~tfG~Is~--- 759 (975)
T COG5181 683 QPPISGILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIGVREWMRICFELVDSLKSWNKEIRRNATETFGCISR--- 759 (975)
T ss_pred CCchhhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhhhHHh---
Confidence 223478999999999987653 4666666666644322211112 1234568899999899999999999887772
Q ss_pred cccccccccchhchHHhhcCchHHHHHHHHHHHHhcCcchHHHHHhhcCChHHHHHHhh---cCCHHHHHHHHHHHHHHh
Q 036199 540 IQSHIAPSEFLPKLVPFLKDATLAVSCLVILKNMCNTEHARVCVVETSGCLPSVAELLE---IGSEEDQEHAVAILLCLC 616 (710)
Q Consensus 540 n~~~iv~aG~V~~Lv~lL~~~~~~~~al~iL~nLa~~~e~r~~i~~~~g~I~~Lv~lL~---~~s~~~ke~A~~aL~~Lc 616 (710)
.+--..++..|+.-|...+=+...+..+ +...+++..|....|=-++. +....+|.-.+.++..+.
T Consensus 760 ---aiGPqdvL~~LlnnLkvqeRq~Rvctsv--------aI~iVae~cgpfsVlP~lm~dY~TPe~nVQnGvLkam~fmF 828 (975)
T COG5181 760 ---AIGPQDVLDILLNNLKVQERQQRVCTSV--------AISIVAEYCGPFSVLPTLMSDYETPEANVQNGVLKAMCFMF 828 (975)
T ss_pred ---hcCHHHHHHHHHhcchHHHHHhhhhhhh--------hhhhhHhhcCchhhHHHHHhcccCchhHHHHhHHHHHHHHH
Confidence 1111223333333332221111111111 11122333343333333333 344444554444433332
Q ss_pred cCChHHHHHHH--hCCchHHHHHHhhcCCHHHHHHHHHHHHHhhhc
Q 036199 617 SQRDQYCKLVM--NEGVIPSLVKISVYGNDKAKVSALELRRLLRDV 660 (710)
Q Consensus 617 ~~~~~~~~~v~--~~G~v~~Lv~L~~~gt~~~k~kA~~LL~~l~~~ 660 (710)
..- .+... -..+.|.|-+-+.+.++.-|.-|..+++||.=.
T Consensus 829 eyi---g~~s~dYvy~itPlleDAltDrD~vhRqta~nvI~Hl~Ln 871 (975)
T COG5181 829 EYI---GQASLDYVYSITPLLEDALTDRDPVHRQTAMNVIRHLVLN 871 (975)
T ss_pred HHH---HHHHHHHHHHhhHHHHhhhcccchHHHHHHHHHHHHHhcC
Confidence 221 11111 123455566667778888888888888887643
|
|
| >KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=85.94 E-value=20 Score=42.22 Aligned_cols=246 Identities=13% Similarity=0.205 Sum_probs=144.9
Q ss_pred hhhcCCCHHHHHHHHHHHHHHHccCcccchhcccCCcHHHHHHHhhccccCCCHHHHHHHHHHHHHHhccCCCCCccccc
Q 036199 388 SRLTELNWDCQCKVIEDYETRLEHDNQVSHSLSSTNFVEPLIRFLRDARDLHDSRAQRIGCRLLLAFVSKNRSGIPYLNE 467 (710)
Q Consensus 388 ~~L~s~~~e~q~~Al~~L~~Lak~~~~~r~~I~~~G~I~~LV~lL~s~~~~~d~~~q~~A~~~L~nL~~~~~~k~~i~~~ 467 (710)
++|...++.+|..|+..|+.|++.+++|--. .-|.+.++|... .+.=+....+.+..+|.--+ .-...
T Consensus 188 EkLeDpDp~V~SAAV~VICELArKnPknyL~-----LAP~ffkllttS---sNNWmLIKiiKLF~aLtplE----PRLgK 255 (877)
T KOG1059|consen 188 EKLEDPDPSVVSAAVSVICELARKNPQNYLQ-----LAPLFYKLLVTS---SNNWVLIKLLKLFAALTPLE----PRLGK 255 (877)
T ss_pred HhccCCCchHHHHHHHHHHHHHhhCCccccc-----ccHHHHHHHhcc---CCCeehHHHHHHHhhccccC----chhhh
Confidence 6788889999999999999999999988654 347778888652 22222223333333332111 11345
Q ss_pred cchHHHHHHhccCcHH---HHHHHHHH--HhccCc-hhhHHHhhhCcHHHHHHhhcCCCHHHHHHHHHHHHHhccCcccc
Q 036199 468 DLFSLLASFLHSAAAT---EETLAILV--ALSSYA-YFISKIVASGALASILNMLDSPNGKFQELAIKILHNLSSDVDIQ 541 (710)
Q Consensus 468 gaI~~LV~lL~s~~~~---~~Aa~~L~--~Ls~~~-~nk~~I~~~GaI~~LV~LL~~~~~~~~~~A~~aL~nLs~~~en~ 541 (710)
..+++|..++.+.+.. -+++.++. +++... ++-..| .=++..|-.++.+.|+..+-.++-|+..+...+.-
T Consensus 256 KLieplt~li~sT~AmSLlYECvNTVVa~s~s~g~~d~~asi--qLCvqKLr~fiedsDqNLKYlgLlam~KI~ktHp~- 332 (877)
T KOG1059|consen 256 KLIEPITELMESTVAMSLLYECVNTVVAVSMSSGMSDHSASI--QLCVQKLRIFIEDSDQNLKYLGLLAMSKILKTHPK- 332 (877)
T ss_pred hhhhHHHHHHHhhHHHHHHHHHHHHheeehhccCCCCcHHHH--HHHHHHHhhhhhcCCccHHHHHHHHHHHHhhhCHH-
Confidence 5789999999887653 23333332 333221 111111 12466677777888999999999999888753221
Q ss_pred cccccccchhchHHhhcC--chHHHHHHHHHHHHhcCcchHHHHHhhcCChHHHHHHhhcCCH-HHHHHHHHHHHHHhcC
Q 036199 542 SHIAPSEFLPKLVPFLKD--ATLAVSCLVILKNMCNTEHARVCVVETSGCLPSVAELLEIGSE-EDQEHAVAILLCLCSQ 618 (710)
Q Consensus 542 ~~iv~aG~V~~Lv~lL~~--~~~~~~al~iL~nLa~~~e~r~~i~~~~g~I~~Lv~lL~~~s~-~~ke~A~~aL~~Lc~~ 618 (710)
.|++ --+.+++.|.| +.++-.|+..|..+.. .++-.+|+. .|+..+...++ ..+..-+.-...+|+.
T Consensus 333 --~Vqa-~kdlIlrcL~DkD~SIRlrALdLl~gmVs-kkNl~eIVk------~LM~~~~~ae~t~yrdell~~II~iCS~ 402 (877)
T KOG1059|consen 333 --AVQA-HKDLILRCLDDKDESIRLRALDLLYGMVS-KKNLMEIVK------TLMKHVEKAEGTNYRDELLTRIISICSQ 402 (877)
T ss_pred --HHHH-hHHHHHHHhccCCchhHHHHHHHHHHHhh-hhhHHHHHH------HHHHHHHhccchhHHHHHHHHHHHHhhh
Confidence 1110 11234666754 6788889988888875 334444443 44554443333 4566666666788887
Q ss_pred ChHHHHHHHhCC-chHHHHHHh-hcCCHHHHHHHHHHHHHhhhc
Q 036199 619 RDQYCKLVMNEG-VIPSLVKIS-VYGNDKAKVSALELRRLLRDV 660 (710)
Q Consensus 619 ~~~~~~~v~~~G-~v~~Lv~L~-~~gt~~~k~kA~~LL~~l~~~ 660 (710)
+. + +-+.+.. .+..|++|. ..|+.++..-|..++-+.-+.
T Consensus 403 sn-Y-~~ItdFEWYlsVlveLa~l~~~~~G~~I~eQi~Dv~iRV 444 (877)
T KOG1059|consen 403 SN-Y-QYITDFEWYLSVLVELARLEGTRHGSLIAEQIIDVAIRV 444 (877)
T ss_pred hh-h-hhhhhHHHHHHHHHHHHhccccchhhHHHHHHHHHheec
Confidence 62 2 2232222 355667774 345666776776666654433
|
|
| >KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=85.44 E-value=3.4 Score=48.29 Aligned_cols=145 Identities=14% Similarity=0.222 Sum_probs=93.4
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHhccCcccccc---cccccchhchHHhhcC--chHHHHHHHHHHHHhcCc-chHHH
Q 036199 509 LASILNMLDSPNGKFQELAIKILHNLSSDVDIQSH---IAPSEFLPKLVPFLKD--ATLAVSCLVILKNMCNTE-HARVC 582 (710)
Q Consensus 509 I~~LV~LL~~~~~~~~~~A~~aL~nLs~~~en~~~---iv~aG~V~~Lv~lL~~--~~~~~~al~iL~nLa~~~-e~r~~ 582 (710)
+..++..|++.++.++..|+..+..|+.--.+|.. |...|.| |..-|.+ +++....+++|..+...- -.+..
T Consensus 801 ~stiL~rLnnksa~vRqqaadlis~la~Vlktc~ee~~m~~lGvv--LyEylgeeypEvLgsILgAikaI~nvigm~km~ 878 (1172)
T KOG0213|consen 801 CSTILWRLNNKSAKVRQQAADLISSLAKVLKTCGEEKLMGHLGVV--LYEYLGEEYPEVLGSILGAIKAIVNVIGMTKMT 878 (1172)
T ss_pred HHHHHHHhcCCChhHHHHHHHHHHHHHHHHHhccHHHHHHHhhHH--HHHhcCcccHHHHHHHHHHHHHHHHhccccccC
Confidence 55667788899999999999988888754444422 2233332 4455532 566555555555554421 11111
Q ss_pred HHhhcCChHHHHHHhhcCCHHHHHHHHHHHHHHhcCChHH---HHHHHhCCchHHHHHHhhcCCHHHHHHHHHHHHHhhh
Q 036199 583 VVETSGCLPSVAELLEIGSEEDQEHAVAILLCLCSQRDQY---CKLVMNEGVIPSLVKISVYGNDKAKVSALELRRLLRD 659 (710)
Q Consensus 583 i~~~~g~I~~Lv~lL~~~s~~~ke~A~~aL~~Lc~~~~~~---~~~v~~~G~v~~Lv~L~~~gt~~~k~kA~~LL~~l~~ 659 (710)
--..+.+|.|.-+|++...+++++++..+..+|.+++++ +.-|. +-=-|+++++..+...|+.|..-+-.+.+
T Consensus 879 -pPi~dllPrltPILknrheKVqen~IdLvg~IadrgpE~v~aREWMR---IcfeLlelLkahkK~iRRaa~nTfG~Iak 954 (1172)
T KOG0213|consen 879 -PPIKDLLPRLTPILKNRHEKVQENCIDLVGTIADRGPEYVSAREWMR---ICFELLELLKAHKKEIRRAAVNTFGYIAK 954 (1172)
T ss_pred -CChhhhcccchHhhhhhHHHHHHHHHHHHHHHHhcCcccCCHHHHHH---HHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Confidence 011468999999999999999999999999999988653 22221 12246667777777888887765554443
|
|
| >KOG3800 consensus Predicted E3 ubiquitin ligase containing RING finger, subunit of transcription/repair factor TFIIH and CDK-activating kinase assembly factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=85.19 E-value=0.55 Score=48.81 Aligned_cols=31 Identities=23% Similarity=0.427 Sum_probs=28.5
Q ss_pred CCCCccchhhHHHHhhhCCCCCCCCCCccCC
Q 036199 285 ESGQTFERMWIQKWFEEGNHTCPKTKMKLVC 315 (710)
Q Consensus 285 ~~G~ty~r~~I~~w~~~g~~~cP~t~~~l~~ 315 (710)
+|||+.|-+|.-+-|..|...||.|+.+|..
T Consensus 22 ~C~H~lCEsCvd~iF~~g~~~CpeC~~iLRk 52 (300)
T KOG3800|consen 22 ECGHRLCESCVDRIFSLGPAQCPECMVILRK 52 (300)
T ss_pred cccchHHHHHHHHHHhcCCCCCCcccchhhh
Confidence 8999999999999999999999999887653
|
|
| >KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=85.16 E-value=17 Score=42.80 Aligned_cols=62 Identities=8% Similarity=0.112 Sum_probs=34.0
Q ss_pred ChHHHHHHhhcCCHHHHHHHHHHHHHHhcCChHHHHHHHhCCchHHHHHHhhcCCHHHHHHHHHHHH
Q 036199 589 CLPSVAELLEIGSEEDQEHAVAILLCLCSQRDQYCKLVMNEGVIPSLVKISVYGNDKAKVSALELRR 655 (710)
Q Consensus 589 ~I~~Lv~lL~~~s~~~ke~A~~aL~~Lc~~~~~~~~~v~~~G~v~~Lv~L~~~gt~~~k~kA~~LL~ 655 (710)
|++.|-.++...++.-|--++-++.-+..-++...+.-. ..++..+.+.++..|-+|..||.
T Consensus 300 CvqKLr~fiedsDqNLKYlgLlam~KI~ktHp~~Vqa~k-----dlIlrcL~DkD~SIRlrALdLl~ 361 (877)
T KOG1059|consen 300 CVQKLRIFIEDSDQNLKYLGLLAMSKILKTHPKAVQAHK-----DLILRCLDDKDESIRLRALDLLY 361 (877)
T ss_pred HHHHHhhhhhcCCccHHHHHHHHHHHHhhhCHHHHHHhH-----HHHHHHhccCCchhHHHHHHHHH
Confidence 566666666667777777777776666655543222111 23344445555555555555544
|
|
| >KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=84.88 E-value=19 Score=42.38 Aligned_cols=252 Identities=14% Similarity=0.118 Sum_probs=138.5
Q ss_pred cchhhcCCCHHHHHHHHHHHHHHHccCccc--chhcccCCcHHHHHHHhhccccCCCHHHHHHHHHHHHHHhc-cCCCCC
Q 036199 386 DLSRLTELNWDCQCKVIEDYETRLEHDNQV--SHSLSSTNFVEPLIRFLRDARDLHDSRAQRIGCRLLLAFVS-KNRSGI 462 (710)
Q Consensus 386 ~L~~L~s~~~e~q~~Al~~L~~Lak~~~~~--r~~I~~~G~I~~LV~lL~s~~~~~d~~~q~~A~~~L~nL~~-~~~~k~ 462 (710)
.|..|.+.+..++.+|+..+..+++-=... -..+..-|.| |.+.|.. .++++.-..+.+|..+.+ ..-.|.
T Consensus 804 iL~rLnnksa~vRqqaadlis~la~Vlktc~ee~~m~~lGvv--LyEylge----eypEvLgsILgAikaI~nvigm~km 877 (1172)
T KOG0213|consen 804 ILWRLNNKSAKVRQQAADLISSLAKVLKTCGEEKLMGHLGVV--LYEYLGE----EYPEVLGSILGAIKAIVNVIGMTKM 877 (1172)
T ss_pred HHHHhcCCChhHHHHHHHHHHHHHHHHHhccHHHHHHHhhHH--HHHhcCc----ccHHHHHHHHHHHHHHHHhcccccc
Confidence 345677788899999988887776531111 1122333332 4555544 677777666666666633 222233
Q ss_pred ccccccchHHHHHHhccCcHH--HHHHHHHHHhccCchhhHHHhh-hCcHHHHHHhhcCCCHHHHHHHHHHHHHhccCcc
Q 036199 463 PYLNEDLFSLLASFLHSAAAT--EETLAILVALSSYAYFISKIVA-SGALASILNMLDSPNGKFQELAIKILHNLSSDVD 539 (710)
Q Consensus 463 ~i~~~gaI~~LV~lL~s~~~~--~~Aa~~L~~Ls~~~~nk~~I~~-~GaI~~LV~LL~~~~~~~~~~A~~aL~nLs~~~e 539 (710)
.---.|.+|.|.-+|++...+ +++...+..++..........+ -..--.|+++|.+-+.+.+.+|..++..++.
T Consensus 878 ~pPi~dllPrltPILknrheKVqen~IdLvg~IadrgpE~v~aREWMRIcfeLlelLkahkK~iRRaa~nTfG~Iak--- 954 (1172)
T KOG0213|consen 878 TPPIKDLLPRLTPILKNRHEKVQENCIDLVGTIADRGPEYVSAREWMRICFELLELLKAHKKEIRRAAVNTFGYIAK--- 954 (1172)
T ss_pred CCChhhhcccchHhhhhhHHHHHHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH---
Confidence 223478999999999987653 6788877777744322222112 2234568888888889999999999887772
Q ss_pred cccccccccchhchHHhhcCchHHHHHHHHHHHHhcCcchHHHHHhhcCC---hHHHHHHhhcCCHHHHHHHHHHHHHHh
Q 036199 540 IQSHIAPSEFLPKLVPFLKDATLAVSCLVILKNMCNTEHARVCVVETSGC---LPSVAELLEIGSEEDQEHAVAILLCLC 616 (710)
Q Consensus 540 n~~~iv~aG~V~~Lv~lL~~~~~~~~al~iL~nLa~~~e~r~~i~~~~g~---I~~Lv~lL~~~s~~~ke~A~~aL~~Lc 616 (710)
.+--..++..|+.-|...+=+...+..+ +...+.++.|- +|.|+.--++....+|.-.+.+|..+.
T Consensus 955 ---aIGPqdVLatLlnnLkvqeRq~RvcTtv--------aIaIVaE~c~pFtVLPalmneYrtPe~nVQnGVLkalsf~F 1023 (1172)
T KOG0213|consen 955 ---AIGPQDVLATLLNNLKVQERQNRVCTTV--------AIAIVAETCGPFTVLPALMNEYRTPEANVQNGVLKALSFMF 1023 (1172)
T ss_pred ---hcCHHHHHHHHHhcchHHHHHhchhhhh--------hhhhhhhhcCchhhhHHHHhhccCchhHHHHhHHHHHHHHH
Confidence 1111223333333332221111111111 11122333343 344433333455555654444444433
Q ss_pred cCChHHHHHHHh--CCchHHHHHHhhcCCHHHHHHHHHHHHHhhhc
Q 036199 617 SQRDQYCKLVMN--EGVIPSLVKISVYGNDKAKVSALELRRLLRDV 660 (710)
Q Consensus 617 ~~~~~~~~~v~~--~G~v~~Lv~L~~~gt~~~k~kA~~LL~~l~~~ 660 (710)
..- .++-.+ ..+.|.|-+-+.+.+..-|.-|..+++|+.=.
T Consensus 1024 eyi---gemskdYiyav~PlleDAlmDrD~vhRqta~~~I~Hl~Lg 1066 (1172)
T KOG0213|consen 1024 EYI---GEMSKDYIYAVTPLLEDALMDRDLVHRQTAMNVIKHLALG 1066 (1172)
T ss_pred HHH---HHHhhhHHHHhhHHHHHhhccccHHHHHHHHHHHHHHhcC
Confidence 222 111111 23456667777888888888999999988644
|
|
| >KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=84.56 E-value=0.26 Score=50.40 Aligned_cols=55 Identities=22% Similarity=0.381 Sum_probs=43.3
Q ss_pred CcccccCCccccCCce----------ecCCCCccchhhHHHHhhhC-CCCCCCCCCccCCCCCccc
Q 036199 267 EVFKCPLSLRLMYDPV----------VIESGQTFERMWIQKWFEEG-NHTCPKTKMKLVCQSLTPN 321 (710)
Q Consensus 267 ~~f~CPI~~~~m~DPV----------~~~~G~ty~r~~I~~w~~~g-~~~cP~t~~~l~~~~l~pN 321 (710)
++=.|-+|++-+-+-| .++|+|.|---||+.|---| .+|||-|++..+...+..|
T Consensus 223 ~d~vCaVCg~~~~~s~~eegvienty~LsCnHvFHEfCIrGWcivGKkqtCPYCKekVdl~rmfsn 288 (328)
T KOG1734|consen 223 SDSVCAVCGQQIDVSVDEEGVIENTYKLSCNHVFHEFCIRGWCIVGKKQTCPYCKEKVDLKRMFSN 288 (328)
T ss_pred CcchhHhhcchheeecchhhhhhhheeeecccchHHHhhhhheeecCCCCCchHHHHhhHhhhccC
Confidence 4568999998777766 68999999999999996533 6799999987765544444
|
|
| >KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown] | Back alignment and domain information |
|---|
Probab=84.28 E-value=18 Score=40.67 Aligned_cols=167 Identities=11% Similarity=0.084 Sum_probs=102.0
Q ss_pred HHHHHHHHHHHhcc----CCCCCccccccchHHHHHHhccCcH---------HHHHHHHHHHhccCchhhHHHhhhCcHH
Q 036199 444 QRIGCRLLLAFVSK----NRSGIPYLNEDLFSLLASFLHSAAA---------TEETLAILVALSSYAYFISKIVASGALA 510 (710)
Q Consensus 444 q~~A~~~L~nL~~~----~~~k~~i~~~gaI~~LV~lL~s~~~---------~~~Aa~~L~~Ls~~~~nk~~I~~~GaI~ 510 (710)
|-.|+....++..+ ..+|..+.++=|++.+=++|.+++. ..-++++|.-.|..++-...=---..||
T Consensus 28 ~fAaLllVTK~vK~~Di~a~~kk~vfeAVGf~Fl~rLl~tk~~p~dcpd~Vy~~i~itvLacFC~~pElAsh~~~v~~IP 107 (698)
T KOG2611|consen 28 RFAALLLVTKFVKNDDIVALNKKLVFEAVGFHFLDRLLRTKSGPGDCPDDVYLQISITVLACFCRVPELASHEEMVSRIP 107 (698)
T ss_pred HHHHHHHHHHHhcccchhhhhhhhHHHHhccchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHhCChhhccCHHHHHhhh
Confidence 33344444455543 2557777888899999999975432 1367777777777765433222235799
Q ss_pred HHHHhhcCC-CHH------HHHHHHHHHHHhccCcccccccccccchhchHHhhc--Cch-HHHHHHHHHHHHhc----C
Q 036199 511 SILNMLDSP-NGK------FQELAIKILHNLSSDVDIQSHIAPSEFLPKLVPFLK--DAT-LAVSCLVILKNMCN----T 576 (710)
Q Consensus 511 ~LV~LL~~~-~~~------~~~~A~~aL~nLs~~~en~~~iv~aG~V~~Lv~lL~--~~~-~~~~al~iL~nLa~----~ 576 (710)
.|.+++..+ |++ ..+++-.+|+..+..+.....++..|+|+.+.++-. +.. ....++.++-.++. .
T Consensus 108 ~llev~~~~~d~d~e~~~~m~~d~Y~cL~~Va~~e~G~~~Lia~G~~~~~~Q~y~~~~~~~d~alal~Vlll~~~~~~cw 187 (698)
T KOG2611|consen 108 LLLEVMSKGIDTDYEDNLIMLEDCYECLYLVATAEAGLMTLIASGGLRVIAQMYELPDGSHDMALALKVLLLLVSKLDCW 187 (698)
T ss_pred HHHHHHHhcCCCchhhhHHHHHHHHHHHHHHhcCCchhHHHHhcCchHHHHHHHhCCCCchhHHHHHHHHHHHHHhcccC
Confidence 999999533 333 778999999999999999999999999999987752 222 23444555544443 1
Q ss_pred cchHHHHHhhcCChHHHHHHhhcCCHHHHHHHHHHHH
Q 036199 577 EHARVCVVETSGCLPSVAELLEIGSEEDQEHAVAILL 613 (710)
Q Consensus 577 ~e~r~~i~~~~g~I~~Lv~lL~~~s~~~ke~A~~aL~ 613 (710)
++.-..+.. .|..+..-+.......|-..+.+|.
T Consensus 188 ~e~~~~fla---li~~va~df~~~~~a~KfElc~lL~ 221 (698)
T KOG2611|consen 188 SETIERFLA---LIAAVARDFAVLHNALKFELCHLLS 221 (698)
T ss_pred cCCHHHHHH---HHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 222222222 2333333333334444555555554
|
|
| >PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 [] | Back alignment and domain information |
|---|
Probab=84.11 E-value=26 Score=37.71 Aligned_cols=154 Identities=21% Similarity=0.166 Sum_probs=84.0
Q ss_pred cHHHHHHhhcCCCHHHHHHHHHHHHHhccC---cccccccccccchhchHHhhcCc----hHHHHHHHHHHHHhc-Ccch
Q 036199 508 ALASILNMLDSPNGKFQELAIKILHNLSSD---VDIQSHIAPSEFLPKLVPFLKDA----TLAVSCLVILKNMCN-TEHA 579 (710)
Q Consensus 508 aI~~LV~LL~~~~~~~~~~A~~aL~nLs~~---~en~~~iv~aG~V~~Lv~lL~~~----~~~~~al~iL~nLa~-~~e~ 579 (710)
.+..+.+.++.|..+-+..|+.++.-|+.. .+....+. ....|.|...+.++ ..+..|+.+|+.++- +..+
T Consensus 87 L~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~~ei~-~~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d 165 (309)
T PF05004_consen 87 LLDALLKSLKKGKSEEQALAARALALLALTLGAGEDSEEIF-EELKPVLKRILTDSSASPKARAACLEALAICTFVGGSD 165 (309)
T ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccHHHHH-HHHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCC
Confidence 477788888888877777788877777754 12333333 35778888888653 233445555555543 1111
Q ss_pred HHHHHhhcCChHHHHH--Hhhc-C---------CHHHHHHHHHHHHHHhcCChHHHHHHHhCCchHHHHHHhhcCCHHHH
Q 036199 580 RVCVVETSGCLPSVAE--LLEI-G---------SEEDQEHAVAILLCLCSQRDQYCKLVMNEGVIPSLVKISVYGNDKAK 647 (710)
Q Consensus 580 r~~i~~~~g~I~~Lv~--lL~~-~---------s~~~ke~A~~aL~~Lc~~~~~~~~~v~~~G~v~~Lv~L~~~gt~~~k 647 (710)
-..+...-..+..+.. .++. | ++...-.|+.+-.-|.+.-+.....-.-...+|.|..++.+.+..+|
T Consensus 166 ~~~~~~~~~~le~if~~~~~~~~~~~~~~~~~~~~~l~~aAL~aW~lLlt~~~~~~~~~~~~~~~~~l~~lL~s~d~~VR 245 (309)
T PF05004_consen 166 EEETEELMESLESIFLLSILKSDGNAPVVAAEDDAALVAAALSAWALLLTTLPDSKLEDLLEEALPALSELLDSDDVDVR 245 (309)
T ss_pred hhHHHHHHHHHHHHHHHHhcCcCCCcccccCCCccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCCCHHHH
Confidence 1222210012332222 1221 1 23444455444323332222211112224568999999999999999
Q ss_pred HHHHHHHHHhhhccC
Q 036199 648 VSALELRRLLRDVAY 662 (710)
Q Consensus 648 ~kA~~LL~~l~~~~~ 662 (710)
-.|...|-+|-+...
T Consensus 246 iAAGEaiAll~E~~~ 260 (309)
T PF05004_consen 246 IAAGEAIALLYELAR 260 (309)
T ss_pred HHHHHHHHHHHHHhh
Confidence 999988887755443
|
The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis []. |
| >KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=83.88 E-value=11 Score=44.35 Aligned_cols=250 Identities=16% Similarity=0.147 Sum_probs=129.0
Q ss_pred hhhcCCCHHHHHHHHHHHHHHHccCcccchhcccCCcHHHHHHHhhccccCCCHHHHHHHHHHHHHHhccCCC-CCcccc
Q 036199 388 SRLTELNWDCQCKVIEDYETRLEHDNQVSHSLSSTNFVEPLIRFLRDARDLHDSRAQRIGCRLLLAFVSKNRS-GIPYLN 466 (710)
Q Consensus 388 ~~L~s~~~e~q~~Al~~L~~Lak~~~~~r~~I~~~G~I~~LV~lL~s~~~~~d~~~q~~A~~~L~nL~~~~~~-k~~i~~ 466 (710)
.-+...++.++..|+-.+..+-.. +.......|+++.|-.++.+ .++.+..+|+.+|..+.....+ ....+.
T Consensus 128 ~~l~d~~~yvRktaa~~vakl~~~---~~~~~~~~gl~~~L~~ll~D----~~p~VVAnAlaaL~eI~e~~~~~~~~~l~ 200 (734)
T KOG1061|consen 128 KCLKDDDPYVRKTAAVCVAKLFDI---DPDLVEDSGLVDALKDLLSD----SNPMVVANALAALSEIHESHPSVNLLELN 200 (734)
T ss_pred HhccCCChhHHHHHHHHHHHhhcC---ChhhccccchhHHHHHHhcC----CCchHHHHHHHHHHHHHHhCCCCCccccc
Confidence 445666777787777666665433 34456678999999999985 7899999999999999553322 222223
Q ss_pred ccchHHHHHHhccCcHHHHHHHHHHHhccC---ch-hhHHHhhhCcHHHHHHhhcCCCHHHHHHHHHHHHHhccCccccc
Q 036199 467 EDLFSLLASFLHSAAATEETLAILVALSSY---AY-FISKIVASGALASILNMLDSPNGKFQELAIKILHNLSSDVDIQS 542 (710)
Q Consensus 467 ~gaI~~LV~lL~s~~~~~~Aa~~L~~Ls~~---~~-nk~~I~~~GaI~~LV~LL~~~~~~~~~~A~~aL~nLs~~~en~~ 542 (710)
.-.+..++..|..-+. =.-+.+|-.|+.. +. .... .+..+...|...+..+.-.+...+.++.....+..
T Consensus 201 ~~~~~~lL~al~ec~E-W~qi~IL~~l~~y~p~d~~ea~~-----i~~r~~p~Lqh~n~avvlsavKv~l~~~~~~~~~~ 274 (734)
T KOG1061|consen 201 PQLINKLLEALNECTE-WGQIFILDCLAEYVPKDSREAED-----ICERLTPRLQHANSAVVLSAVKVILQLVKYLKQVN 274 (734)
T ss_pred HHHHHHHHHHHHHhhh-hhHHHHHHHHHhcCCCCchhHHH-----HHHHhhhhhccCCcceEeehHHHHHHHHHHHHHHH
Confidence 3333333333322111 1233333344321 11 1111 23334444455555555555555555554333322
Q ss_pred ccccccchhchHHhhcCch-H------------------------------------HHHHHHHHHHHhcCcchHHHHHh
Q 036199 543 HIAPSEFLPKLVPFLKDAT-L------------------------------------AVSCLVILKNMCNTEHARVCVVE 585 (710)
Q Consensus 543 ~iv~aG~V~~Lv~lL~~~~-~------------------------------------~~~al~iL~nLa~~~e~r~~i~~ 585 (710)
..+-...-++|+.++..+. + ...=+.++..|+....-.+
T Consensus 275 ~~~~~K~~~pl~tlls~~~e~qyvaLrNi~lil~~~p~~~~~~~~~Ff~kynDPiYvK~eKleil~~la~~~nl~q---- 350 (734)
T KOG1061|consen 275 ELLFKKVAPPLVTLLSSESEIQYVALRNINLILQKRPEILKVEIKVFFCKYNDPIYVKLEKLEILIELANDANLAQ---- 350 (734)
T ss_pred HHHHHHhcccceeeecccchhhHHHHhhHHHHHHhChHHHHhHhHeeeeecCCchhhHHHHHHHHHHHhhHhHHHH----
Confidence 2222333444554443322 1 1111222222222111000
Q ss_pred hcCChHHHHHHhhcCCHHHHHHHHHHHHHHhcCChHHHHHHHhCCchHHHHHHhhcCCHHHHHHHHHHHH-HhhhccCC
Q 036199 586 TSGCLPSVAELLEIGSEEDQEHAVAILLCLCSQRDQYCKLVMNEGVIPSLVKISVYGNDKAKVSALELRR-LLRDVAYS 663 (710)
Q Consensus 586 ~~g~I~~Lv~lL~~~s~~~ke~A~~aL~~Lc~~~~~~~~~v~~~G~v~~Lv~L~~~gt~~~k~kA~~LL~-~l~~~~~~ 663 (710)
.++-|.+.-..-+.+.-..|+.++..++..-.+ .++.+..|++++..+-+.+...+..+++ ++|+..+.
T Consensus 351 ---vl~El~eYatevD~~fvrkaIraig~~aik~e~------~~~cv~~lLell~~~~~yvvqE~~vvi~dilRkyP~~ 420 (734)
T KOG1061|consen 351 ---VLAELKEYATEVDVDFVRKAVRAIGRLAIKAEQ------SNDCVSILLELLETKVDYVVQEAIVVIRDILRKYPNK 420 (734)
T ss_pred ---HHHHHHHhhhhhCHHHHHHHHHHhhhhhhhhhh------hhhhHHHHHHHHhhcccceeeehhHHHHhhhhcCCCc
Confidence 011111111224666667777777776554322 1778899999988777776666777777 55665443
|
|
| >KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=83.46 E-value=14 Score=43.55 Aligned_cols=201 Identities=14% Similarity=0.115 Sum_probs=119.4
Q ss_pred CCcHHHHHHHhhccccC---CCHHHHHHHHHHHHHHhccCCCCCccccccchHHHHHHhccCcHH--HHHHHHHHHhcc-
Q 036199 422 TNFVEPLIRFLRDARDL---HDSRAQRIGCRLLLAFVSKNRSGIPYLNEDLFSLLASFLHSAAAT--EETLAILVALSS- 495 (710)
Q Consensus 422 ~G~I~~LV~lL~s~~~~---~d~~~q~~A~~~L~nL~~~~~~k~~i~~~gaI~~LV~lL~s~~~~--~~Aa~~L~~Ls~- 495 (710)
.+.+|.|+++|....+. .|-..-..|-.+|.-++.....++ +. -++|.+-.-+++++-+ +.|+-++...-.
T Consensus 318 ~~v~P~Ll~~L~kqde~~d~DdWnp~kAAg~CL~l~A~~~~D~I--v~-~Vl~Fiee~i~~pdwr~reaavmAFGSIl~g 394 (859)
T KOG1241|consen 318 QDVVPVLLELLTKQDEDDDDDDWNPAKAAGVCLMLFAQCVGDDI--VP-HVLPFIEENIQNPDWRNREAAVMAFGSILEG 394 (859)
T ss_pred hHhhHHHHHHHHhCCCCcccccCcHHHHHHHHHHHHHHHhcccc--hh-hhHHHHHHhcCCcchhhhhHHHHHHHhhhcC
Confidence 36788899988652111 122334445555555544333222 22 4555555566777653 455555555543
Q ss_pred CchhhHHHhhhCcHHHHHHhhcCCCHHHHHHHHHHHHHhcc-Cccccc-ccccccchhchHHhhcC-chHHHHHHHHHHH
Q 036199 496 YAYFISKIVASGALASILNMLDSPNGKFQELAIKILHNLSS-DVDIQS-HIAPSEFLPKLVPFLKD-ATLAVSCLVILKN 572 (710)
Q Consensus 496 ~~~nk~~I~~~GaI~~LV~LL~~~~~~~~~~A~~aL~nLs~-~~en~~-~iv~aG~V~~Lv~lL~~-~~~~~~al~iL~n 572 (710)
-+..+..-...+++|.++.++.+.+.-++..++++|..++. .++-+. ...-.+.++.|+.=|.| +.+...+++++.+
T Consensus 395 p~~~~Lt~iV~qalp~ii~lm~D~sl~VkdTaAwtlgrI~d~l~e~~~n~~~l~~~l~~l~~gL~DePrva~N~CWAf~~ 474 (859)
T KOG1241|consen 395 PEPDKLTPIVIQALPSIINLMSDPSLWVKDTAAWTLGRIADFLPEAIINQELLQSKLSALLEGLNDEPRVASNVCWAFIS 474 (859)
T ss_pred CchhhhhHHHhhhhHHHHHHhcCchhhhcchHHHHHHHHHhhchhhcccHhhhhHHHHHHHHHhhhCchHHHHHHHHHHH
Confidence 33344444468899999999998888889999999999985 343332 23345677777776654 7899999999999
Q ss_pred HhcC--cchHHH----HHhhcCChHHHHH-Hhh---c---CCHHHHHHHHHHHHHHhcCChHHHHHHH
Q 036199 573 MCNT--EHARVC----VVETSGCLPSVAE-LLE---I---GSEEDQEHAVAILLCLCSQRDQYCKLVM 627 (710)
Q Consensus 573 La~~--~e~r~~----i~~~~g~I~~Lv~-lL~---~---~s~~~ke~A~~aL~~Lc~~~~~~~~~v~ 627 (710)
|+.. +..... ... ...+.++. +|. . .....|-.|..+|-.|-.+++..+-.++
T Consensus 475 Laea~~eA~~s~~qt~~~t--~~y~~ii~~Ll~~tdr~dgnqsNLR~AAYeALmElIk~st~~vy~~v 540 (859)
T KOG1241|consen 475 LAEAAYEAAVSNGQTDPAT--PFYEAIIGSLLKVTDRADGNQSNLRSAAYEALMELIKNSTDDVYPMV 540 (859)
T ss_pred HHHHHHHhccCCCCCCccc--hhHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHcCcHHHHHHH
Confidence 9952 111111 111 12223333 222 2 2334477788888888877765444443
|
|
| >PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region | Back alignment and domain information |
|---|
Probab=83.46 E-value=1.5 Score=38.78 Aligned_cols=66 Identities=20% Similarity=0.232 Sum_probs=45.9
Q ss_pred hCcHHHHHHhhcCCCHHHHHHHHHHHHHhccCcccccccc--cccchhchHHhhcCchH-HHHHHHHHHHH
Q 036199 506 SGALASILNMLDSPNGKFQELAIKILHNLSSDVDIQSHIA--PSEFLPKLVPFLKDATL-AVSCLVILKNM 573 (710)
Q Consensus 506 ~GaI~~LV~LL~~~~~~~~~~A~~aL~nLs~~~en~~~iv--~aG~V~~Lv~lL~~~~~-~~~al~iL~nL 573 (710)
.-.+++++..+.+.+.+++..|+.+|+|++..-.. .+. -..+.+.|.+++.|++- +..++..|-+|
T Consensus 26 ~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~--~~l~~f~~IF~~L~kl~~D~d~~Vr~~a~~Ld~l 94 (97)
T PF12755_consen 26 DEILPPVLKCFDDQDSRVRYYACEALYNISKVARG--EILPYFNEIFDALCKLSADPDENVRSAAELLDRL 94 (97)
T ss_pred HHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHH
Confidence 34589999999999999999999999999853322 222 24566667777766432 44555555554
|
|
| >KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=83.36 E-value=54 Score=39.11 Aligned_cols=249 Identities=13% Similarity=0.084 Sum_probs=142.0
Q ss_pred hhhcCCCHHHHHHHHHHHHHHHccCcccchhcccCCcHHHHHHHhhccccCCCHHHHHHHHHHHHHHhccC------CCC
Q 036199 388 SRLTELNWDCQCKVIEDYETRLEHDNQVSHSLSSTNFVEPLIRFLRDARDLHDSRAQRIGCRLLLAFVSKN------RSG 461 (710)
Q Consensus 388 ~~L~s~~~e~q~~Al~~L~~Lak~~~~~r~~I~~~G~I~~LV~lL~s~~~~~d~~~q~~A~~~L~nL~~~~------~~k 461 (710)
+.|.+...-+..+|+.++..+...++.- ... .+..|--+|++ ..+..+-.|+..|-.++... +|+
T Consensus 252 s~l~~K~emV~~EaArai~~l~~~~~r~----l~p-avs~Lq~flss----p~~~lRfaAvRtLnkvAm~~P~~v~~cN~ 322 (865)
T KOG1078|consen 252 SCLRHKSEMVIYEAARAIVSLPNTNSRE----LAP-AVSVLQLFLSS----PKVALRFAAVRTLNKVAMKHPQAVTVCNL 322 (865)
T ss_pred HHHhchhHHHHHHHHHHHhhccccCHhh----cch-HHHHHHHHhcC----cHHHHHHHHHHHHHHHHHhCCccccccch
Confidence 4455556667788888888776543321 111 56666667766 66777777777887775321 222
Q ss_pred Cc---ccc---ccchHHHHHHhccCcHH------HHHHHHHHHhccCchhhHHHh-------------hhCcHHHHHHhh
Q 036199 462 IP---YLN---EDLFSLLASFLHSAAAT------EETLAILVALSSYAYFISKIV-------------ASGALASILNML 516 (710)
Q Consensus 462 ~~---i~~---~gaI~~LV~lL~s~~~~------~~Aa~~L~~Ls~~~~nk~~I~-------------~~GaI~~LV~LL 516 (710)
.. |-. .=+-.++..+|+.|... ..-+....+++ +++|..++ ..+.+..|-++|
T Consensus 323 elE~lItd~NrsIat~AITtLLKTG~e~sv~rLm~qI~~fv~dis--DeFKivvvdai~sLc~~fp~k~~~~m~FL~~~L 400 (865)
T KOG1078|consen 323 DLESLITDSNRSIATLAITTLLKTGTESSVDRLMKQISSFVSDIS--DEFKIVVVDAIRSLCLKFPRKHTVMMNFLSNML 400 (865)
T ss_pred hHHhhhcccccchhHHHHHHHHHhcchhHHHHHHHHHHHHHHhcc--ccceEEeHHHHHHHHhhccHHHHHHHHHHHHHH
Confidence 11 000 11344555666655431 11222222222 23332221 123456666666
Q ss_pred c-CCCHHHHHHHHHHHHHhcc-CcccccccccccchhchHHhhcCchHHHHHHHHHHHHhcCcchHHHHHhhcCChHHHH
Q 036199 517 D-SPNGKFQELAIKILHNLSS-DVDIQSHIAPSEFLPKLVPFLKDATLAVSCLVILKNMCNTEHARVCVVETSGCLPSVA 594 (710)
Q Consensus 517 ~-~~~~~~~~~A~~aL~nLs~-~~en~~~iv~aG~V~~Lv~lL~~~~~~~~al~iL~nLa~~~e~r~~i~~~~g~I~~Lv 594 (710)
+ +|.-+-+.+...++..... +++.|.. ++..|..++.|.+....+..+|..|-. ||-.+... ..-|..+.
T Consensus 401 r~eGg~e~K~aivd~Ii~iie~~pdsKe~-----~L~~LCefIEDce~~~i~~rILhlLG~--EgP~a~~P-skyir~iy 472 (865)
T KOG1078|consen 401 REEGGFEFKRAIVDAIIDIIEENPDSKER-----GLEHLCEFIEDCEFTQIAVRILHLLGK--EGPKAPNP-SKYIRFIY 472 (865)
T ss_pred HhccCchHHHHHHHHHHHHHHhCcchhhH-----HHHHHHHHHHhccchHHHHHHHHHHhc--cCCCCCCc-chhhHHHh
Confidence 4 4555667777766665554 5555443 345667777777777777888887754 11112222 22344444
Q ss_pred HHhhcCCHHHHHHHHHHHHHHhcCChHHHHHHHhCCchHHHHHHhhcCCHHHHHHHHHHHHHhhhc
Q 036199 595 ELLEIGSEEDQEHAVAILLCLCSQRDQYCKLVMNEGVIPSLVKISVYGNDKAKVSALELRRLLRDV 660 (710)
Q Consensus 595 ~lL~~~s~~~ke~A~~aL~~Lc~~~~~~~~~v~~~G~v~~Lv~L~~~gt~~~k~kA~~LL~~l~~~ 660 (710)
..+--.+..++..|+.+|.....+++. ....+.-.|...+.+.++.+|+.|.-.|+.+.+.
T Consensus 473 NRviLEn~ivRaaAv~alaKfg~~~~~-----l~~sI~vllkRc~~D~DdevRdrAtf~l~~l~~~ 533 (865)
T KOG1078|consen 473 NRVILENAIVRAAAVSALAKFGAQDVV-----LLPSILVLLKRCLNDSDDEVRDRATFYLKNLEEK 533 (865)
T ss_pred hhhhhhhhhhHHHHHHHHHHHhcCCCC-----ccccHHHHHHHHhcCchHHHHHHHHHHHHHhhhh
Confidence 444446788888999999888754421 2223344556678888999999999999998843
|
|
| >PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms [] | Back alignment and domain information |
|---|
Probab=83.02 E-value=6.3 Score=41.01 Aligned_cols=216 Identities=13% Similarity=0.095 Sum_probs=128.4
Q ss_pred CHHHHHHHHHHHHHHhccCCCCCcc--ccccchHHHHHH-------hccCc--H----H-HHHHHHHHHhccCchhhHHH
Q 036199 440 DSRAQRIGCRLLLAFVSKNRSGIPY--LNEDLFSLLASF-------LHSAA--A----T-EETLAILVALSSYAYFISKI 503 (710)
Q Consensus 440 d~~~q~~A~~~L~nL~~~~~~k~~i--~~~gaI~~LV~l-------L~s~~--~----~-~~Aa~~L~~Ls~~~~nk~~I 503 (710)
+++.+++|+..|..--....+-..+ -..|.+..|++= |..+. . + -+|.+.|..++.+++.|..+
T Consensus 8 ~~~~Re~Al~eLsk~r~~~~~La~~LW~s~G~i~~LLqEIisiYp~l~~~~Lt~~~snRVcnaLaLlQ~vAshpetr~~F 87 (262)
T PF04078_consen 8 NPETRENALLELSKKRESFPDLAPLLWHSFGTIAALLQEIISIYPALSPPNLTARQSNRVCNALALLQCVASHPETRMPF 87 (262)
T ss_dssp SHHHHHHHHHHHHHTCCC-TTHHHHHHTSTTHHHHHHHHHHGGGGGTTTT---HHHHHHHHHHHHHHHHHHH-TTTHHHH
T ss_pred CcchHHHHHHHHHHhhhcccchhHHHHcCCChHHHHHHHHHHHcccCCCcccCHHHHHHHHHHHHHHHHHHcChHHHHHH
Confidence 5667777766555432211111111 145666555432 22221 1 1 27888888999999999999
Q ss_pred hhhCcHHHHHHhhcCCC-----HHHHHHHHHHHHHhcc--CcccccccccccchhchHHhhcCc--hHHHHHHHHHHHHh
Q 036199 504 VASGALASILNMLDSPN-----GKFQELAIKILHNLSS--DVDIQSHIAPSEFLPKLVPFLKDA--TLAVSCLVILKNMC 574 (710)
Q Consensus 504 ~~~GaI~~LV~LL~~~~-----~~~~~~A~~aL~nLs~--~~en~~~iv~aG~V~~Lv~lL~~~--~~~~~al~iL~nLa 574 (710)
.++...--|.-.|+..+ +..+-.+++++..|.. +++....+.+.++||.-++.|..+ -...-|.-++..+-
T Consensus 88 l~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcLr~me~GselSKtvAtfIlqKIL 167 (262)
T PF04078_consen 88 LKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCLRIMEFGSELSKTVATFILQKIL 167 (262)
T ss_dssp HHTTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHHHHHHHS-HHHHHHHHHHHHHHH
T ss_pred HHcCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 99887655556664332 3456778888888886 445566778899999999999544 23566777888887
Q ss_pred cCcchHHHHHhhcC-------ChHHHHH-HhhcCCHHHHHHHHHHHHHHhcCChHHHHHHHhCCchHHHHH----HhhcC
Q 036199 575 NTEHARVCVVETSG-------CLPSVAE-LLEIGSEEDQEHAVAILLCLCSQRDQYCKLVMNEGVIPSLVK----ISVYG 642 (710)
Q Consensus 575 ~~~e~r~~i~~~~g-------~I~~Lv~-lL~~~s~~~ke~A~~aL~~Lc~~~~~~~~~v~~~G~v~~Lv~----L~~~g 642 (710)
.++.|-..+.++.. .+..+|. +....+++.-++.+.+-..|+.+. ..+..+.+ ..-..|-+ -...+
T Consensus 168 ~dd~GL~yiC~t~eRf~av~~vL~~mV~~l~~~pS~RLLKhIIrCYlRLsdnp-rar~aL~~-~LP~~Lrd~~f~~~l~~ 245 (262)
T PF04078_consen 168 LDDVGLNYICQTAERFFAVAMVLNKMVEQLVKQPSPRLLKHIIRCYLRLSDNP-RAREALRQ-CLPDQLRDGTFSNILKD 245 (262)
T ss_dssp HSHHHHHHHTSSHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHTTST-THHHHHHH-HS-GGGTSSTTTTGGCS
T ss_pred cchhHHHHHhcCHHHHHHHHHHHHHHHHHHccCCChhHHHHHHHHHHHHccCH-HHHHHHHH-hCcHHHhcHHHHHHHhc
Confidence 78888777765432 2333333 233579999999999999999988 33443332 22112211 11233
Q ss_pred CHHHHHHHHHHHHHh
Q 036199 643 NDKAKVSALELRRLL 657 (710)
Q Consensus 643 t~~~k~kA~~LL~~l 657 (710)
++.+|+-=..|+..+
T Consensus 246 D~~~k~~l~qLl~nl 260 (262)
T PF04078_consen 246 DPSTKRWLQQLLSNL 260 (262)
T ss_dssp -HHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHh
Confidence 556666666666554
|
Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B. |
| >KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=82.84 E-value=0.42 Score=39.54 Aligned_cols=50 Identities=24% Similarity=0.346 Sum_probs=33.3
Q ss_pred CCCcccccCCccccCC-ceec-CCCCccchhhHHHHhhh--CCCCCCCCCCccC
Q 036199 265 IPEVFKCPLSLRLMYD-PVVI-ESGQTFERMWIQKWFEE--GNHTCPKTKMKLV 314 (710)
Q Consensus 265 ~p~~f~CPI~~~~m~D-PV~~-~~G~ty~r~~I~~w~~~--g~~~cP~t~~~l~ 314 (710)
.|.+=.||-|.-.=-| |.++ -|.|.|-++||.+|+.. ....||.|+|...
T Consensus 28 m~Fdg~Cp~Ck~PgDdCPLv~G~C~h~fh~hCI~~wl~~~tsq~~CPmcRq~~~ 81 (84)
T KOG1493|consen 28 MPFDGCCPDCKLPGDDCPLVWGYCLHAFHAHCILKWLNTPTSQGQCPMCRQTWQ 81 (84)
T ss_pred cccCCcCCCCcCCCCCCccHHHHHHHHHHHHHHHHHhcCccccccCCcchheeE
Confidence 3444455555433322 3333 88999999999999873 4567999998653
|
|
| >PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 [] | Back alignment and domain information |
|---|
Probab=82.69 E-value=1.9 Score=29.30 Aligned_cols=28 Identities=21% Similarity=0.451 Sum_probs=24.9
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHhcc
Q 036199 509 LASILNMLDSPNGKFQELAIKILHNLSS 536 (710)
Q Consensus 509 I~~LV~LL~~~~~~~~~~A~~aL~nLs~ 536 (710)
+|.+++++.+++++++..|+.+|.+++.
T Consensus 2 lp~l~~~l~D~~~~VR~~a~~~l~~i~~ 29 (31)
T PF02985_consen 2 LPILLQLLNDPSPEVRQAAAECLGAIAE 29 (31)
T ss_dssp HHHHHHHHT-SSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence 7999999999999999999999998863
|
Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B .... |
| >KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=82.62 E-value=4.8 Score=47.34 Aligned_cols=198 Identities=15% Similarity=0.140 Sum_probs=116.1
Q ss_pred ccccCCCHHHHHHHHHHHHHHhccCCCCCccccccchHHHHHHhccCcHHHHHHHHHHHhccCchhhHHHhhhCcHHHHH
Q 036199 434 DARDLHDSRAQRIGCRLLLAFVSKNRSGIPYLNEDLFSLLASFLHSAAATEETLAILVALSSYAYFISKIVASGALASIL 513 (710)
Q Consensus 434 s~~~~~d~~~q~~A~~~L~nL~~~~~~k~~i~~~gaI~~LV~lL~s~~~~~~Aa~~L~~Ls~~~~nk~~I~~~GaI~~LV 513 (710)
.+..+.++..+..|+..+..+ +..-+..-.+.+|...|+++......++++......+.+.......|.++.|-
T Consensus 93 kD~~d~np~iR~lAlrtm~~l------~v~~i~ey~~~Pl~~~l~d~~~yvRktaa~~vakl~~~~~~~~~~~gl~~~L~ 166 (734)
T KOG1061|consen 93 KDCEDPNPLIRALALRTMGCL------RVDKITEYLCDPLLKCLKDDDPYVRKTAAVCVAKLFDIDPDLVEDSGLVDALK 166 (734)
T ss_pred ccCCCCCHHHHHHHhhceeeE------eehHHHHHHHHHHHHhccCCChhHHHHHHHHHHHhhcCChhhccccchhHHHH
Confidence 334557788887776665544 11113455778888888888775444444444444566677777899999999
Q ss_pred HhhcCCCHHHHHHHHHHHHHhccCccc-ccccccccchhchHHhhcCchHHHHHHHHHHHHhcC-cc-hHHHHHhhcCCh
Q 036199 514 NMLDSPNGKFQELAIKILHNLSSDVDI-QSHIAPSEFLPKLVPFLKDATLAVSCLVILKNMCNT-EH-ARVCVVETSGCL 590 (710)
Q Consensus 514 ~LL~~~~~~~~~~A~~aL~nLs~~~en-~~~iv~aG~V~~Lv~lL~~~~~~~~al~iL~nLa~~-~e-~r~~i~~~~g~I 590 (710)
+++.+.++.+..+|+.+|..+...+.+ -..-...-.+..++..|.+-. ...-+.+|..|+.. +. .+.+. ..+
T Consensus 167 ~ll~D~~p~VVAnAlaaL~eI~e~~~~~~~~~l~~~~~~~lL~al~ec~-EW~qi~IL~~l~~y~p~d~~ea~----~i~ 241 (734)
T KOG1061|consen 167 DLLSDSNPMVVANALAALSEIHESHPSVNLLELNPQLINKLLEALNECT-EWGQIFILDCLAEYVPKDSREAE----DIC 241 (734)
T ss_pred HHhcCCCchHHHHHHHHHHHHHHhCCCCCcccccHHHHHHHHHHHHHhh-hhhHHHHHHHHHhcCCCCchhHH----HHH
Confidence 999999999999999999999865543 222222333444444442210 11224556666651 11 11111 123
Q ss_pred HHHHHHhhcCCHHHHHHHHHHHHHHhcCChHHHHHHHhCCchHHHHHHhhcCC
Q 036199 591 PSVAELLEIGSEEDQEHAVAILLCLCSQRDQYCKLVMNEGVIPSLVKISVYGN 643 (710)
Q Consensus 591 ~~Lv~lL~~~s~~~ke~A~~aL~~Lc~~~~~~~~~v~~~G~v~~Lv~L~~~gt 643 (710)
..+...|.+.++.+.-.|+.+++.+...-.. .....-.-+-++|+.++...+
T Consensus 242 ~r~~p~Lqh~n~avvlsavKv~l~~~~~~~~-~~~~~~~K~~~pl~tlls~~~ 293 (734)
T KOG1061|consen 242 ERLTPRLQHANSAVVLSAVKVILQLVKYLKQ-VNELLFKKVAPPLVTLLSSES 293 (734)
T ss_pred HHhhhhhccCCcceEeehHHHHHHHHHHHHH-HHHHHHHHhcccceeeecccc
Confidence 3445556666777777777777776655433 222233334466666655554
|
|
| >PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A | Back alignment and domain information |
|---|
Probab=82.29 E-value=0.57 Score=38.72 Aligned_cols=47 Identities=21% Similarity=0.576 Sum_probs=22.8
Q ss_pred cccccCCccccC-C---ceec----CCCCccchhhHHHHhhh--CC--------CCCCCCCCccC
Q 036199 268 VFKCPLSLRLMY-D---PVVI----ESGQTFERMWIQKWFEE--GN--------HTCPKTKMKLV 314 (710)
Q Consensus 268 ~f~CPI~~~~m~-D---PV~~----~~G~ty~r~~I~~w~~~--g~--------~~cP~t~~~l~ 314 (710)
+..|+||..... + |+++ .||++|=..|+.+||.. +. .+||.|++++.
T Consensus 2 ~~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i~ 66 (70)
T PF11793_consen 2 ELECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPIS 66 (70)
T ss_dssp --S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEEE
T ss_pred CCCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCeee
Confidence 467999998754 2 5554 57999999999999863 21 24999988764
|
|
| >PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B | Back alignment and domain information |
|---|
Probab=82.28 E-value=1.2 Score=33.93 Aligned_cols=43 Identities=23% Similarity=0.393 Sum_probs=21.9
Q ss_pred ccCCcccc--CCceec--CCCCccchhhHHHHhhhCCCCCCCCCCcc
Q 036199 271 CPLSLRLM--YDPVVI--ESGQTFERMWIQKWFEEGNHTCPKTKMKL 313 (710)
Q Consensus 271 CPI~~~~m--~DPV~~--~~G~ty~r~~I~~w~~~g~~~cP~t~~~l 313 (710)
||+|.+-| +|--.. +||+.+||.|..+-...++..||-|++++
T Consensus 1 cp~C~e~~d~~d~~~~PC~Cgf~IC~~C~~~i~~~~~g~CPgCr~~Y 47 (48)
T PF14570_consen 1 CPLCDEELDETDKDFYPCECGFQICRFCYHDILENEGGRCPGCREPY 47 (48)
T ss_dssp -TTTS-B--CCCTT--SSTTS----HHHHHHHTTSS-SB-TTT--B-
T ss_pred CCCcccccccCCCccccCcCCCcHHHHHHHHHHhccCCCCCCCCCCC
Confidence 78888887 221222 67999999998887776788899999875
|
|
| >KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=81.69 E-value=7.3 Score=46.91 Aligned_cols=183 Identities=13% Similarity=0.137 Sum_probs=108.7
Q ss_pred HHHHHHhhccccCCCHHHHHHHHHHHHHHhccCCCCCccccccchHHHHHHhccCcHHHHHHHHHHHhccCch--hhHHH
Q 036199 426 EPLIRFLRDARDLHDSRAQRIGCRLLLAFVSKNRSGIPYLNEDLFSLLASFLHSAAATEETLAILVALSSYAY--FISKI 503 (710)
Q Consensus 426 ~~LV~lL~s~~~~~d~~~q~~A~~~L~nL~~~~~~k~~i~~~gaI~~LV~lL~s~~~~~~Aa~~L~~Ls~~~~--nk~~I 503 (710)
...++.|.+ ...|.++++.|+.++..+..+-......--...++.+++=|+++.++-.|+.++..++...- +...+
T Consensus 571 ~~tl~rL~a--~d~DqeVkeraIscmgq~i~~fgD~l~~eL~~~L~il~eRl~nEiTRl~AvkAlt~Ia~S~l~i~l~~~ 648 (1233)
T KOG1824|consen 571 DCTLQRLKA--TDSDQEVKERAISCMGQIIANFGDFLGNELPRTLPILLERLGNEITRLTAVKALTLIAMSPLDIDLSPV 648 (1233)
T ss_pred HHHHHHHhc--ccccHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhchhHHHHHHHHHHHHHhccceeehhhh
Confidence 334455554 34688999999999887743221112222356788888888888887788888876664432 22222
Q ss_pred hhhCcHHHHHHhhcCCCHHHHHHHHHHHHHhccCc-ccccccccccchhchHHhhcCc--hHHHHHHHHHHHHhcCcchH
Q 036199 504 VASGALASILNMLDSPNGKFQELAIKILHNLSSDV-DIQSHIAPSEFLPKLVPFLKDA--TLAVSCLVILKNMCNTEHAR 580 (710)
Q Consensus 504 ~~~GaI~~LV~LL~~~~~~~~~~A~~aL~nLs~~~-en~~~iv~aG~V~~Lv~lL~~~--~~~~~al~iL~nLa~~~e~r 580 (710)
+ ..+++.|+..++......+...+.++-.|..+- ++...-.-.-++..+-.++.+. .++..|+.+|.-++......
T Consensus 649 l-~~il~~l~~flrK~~r~lr~~~l~a~~~L~~~~~~~~~~~~~e~vL~el~~Lisesdlhvt~~a~~~L~tl~~~~ps~ 727 (1233)
T KOG1824|consen 649 L-TEILPELASFLRKNQRALRLATLTALDKLVKNYSDSIPAELLEAVLVELPPLISESDLHVTQLAVAFLTTLAIIQPSS 727 (1233)
T ss_pred H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhcccHH
Confidence 2 345788888886555555555566666665422 1111111111222233344443 45888999999998866554
Q ss_pred HHHHhhcCChHHHHHHhhcCCHHHHHHHHHHHHH
Q 036199 581 VCVVETSGCLPSVAELLEIGSEEDQEHAVAILLC 614 (710)
Q Consensus 581 ~~i~~~~g~I~~Lv~lL~~~s~~~ke~A~~aL~~ 614 (710)
..-.. +-.++.++.+++ ||-.+-.|..+++.
T Consensus 728 l~~~~-~~iL~~ii~ll~--Spllqg~al~~~l~ 758 (1233)
T KOG1824|consen 728 LLKIS-NPILDEIIRLLR--SPLLQGGALSALLL 758 (1233)
T ss_pred HHHHh-hhhHHHHHHHhh--CccccchHHHHHHH
Confidence 43333 567888888886 45566666666544
|
|
| >KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=81.68 E-value=0.37 Score=56.94 Aligned_cols=46 Identities=17% Similarity=0.291 Sum_probs=38.5
Q ss_pred ccccCCccccCCceecCCCCccchhhHHHHhhh-CCCCCCCCCCccCC
Q 036199 269 FKCPLSLRLMYDPVVIESGQTFERMWIQKWFEE-GNHTCPKTKMKLVC 315 (710)
Q Consensus 269 f~CPI~~~~m~DPV~~~~G~ty~r~~I~~w~~~-g~~~cP~t~~~l~~ 315 (710)
+.|+||.+ ..+||++.|||-+|++|+.+-+.. ....||.|+..+.+
T Consensus 455 ~~c~ic~~-~~~~~it~c~h~~c~~c~~~~i~~~~~~~~~~cr~~l~~ 501 (674)
T KOG1001|consen 455 HWCHICCD-LDSFFITRCGHDFCVECLKKSIQQSENAPCPLCRNVLKE 501 (674)
T ss_pred cccccccc-cccceeecccchHHHHHHHhccccccCCCCcHHHHHHHH
Confidence 89999999 899999999999999999998764 33359999765544
|
|
| >COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=81.67 E-value=15 Score=39.21 Aligned_cols=218 Identities=13% Similarity=0.100 Sum_probs=136.8
Q ss_pred CHHHHHHHHHHHHHHhccCCC-CCccccccchHHHHHHhccCcH--H--HHHHHHHHHhccCchhhHHHhh-hCcHHHHH
Q 036199 440 DSRAQRIGCRLLLAFVSKNRS-GIPYLNEDLFSLLASFLHSAAA--T--EETLAILVALSSYAYFISKIVA-SGALASIL 513 (710)
Q Consensus 440 d~~~q~~A~~~L~nL~~~~~~-k~~i~~~gaI~~LV~lL~s~~~--~--~~Aa~~L~~Ls~~~~nk~~I~~-~GaI~~LV 513 (710)
+.-++--|+.+|.++.-..+. ++..++...-..++.+|++... + -+.+-+++-|+-.......|-. ...|.-|+
T Consensus 162 ~~lTrlfav~cl~~l~~~~e~R~i~waentcs~r~~e~l~n~vg~~qlQY~SL~~iw~lTf~~~~aqdi~K~~dli~dli 241 (432)
T COG5231 162 DFLTRLFAVSCLSNLEFDVEKRKIEWAENTCSRRFMEILQNYVGVKQLQYNSLIIIWILTFSKECAQDIDKMDDLINDLI 241 (432)
T ss_pred HHHHHHHHHHHHhhhhhhHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH
Confidence 344566677777777443332 2333344455667777776443 2 4788888888877776655554 56788888
Q ss_pred HhhcCCC-HHHHHHHHHHHHHhcc-Cc-ccccccccccchhchHHhhc-----CchHHHH---HHHHHH----HHhcCcc
Q 036199 514 NMLDSPN-GKFQELAIKILHNLSS-DV-DIQSHIAPSEFLPKLVPFLK-----DATLAVS---CLVILK----NMCNTEH 578 (710)
Q Consensus 514 ~LL~~~~-~~~~~~A~~aL~nLs~-~~-en~~~iv~aG~V~~Lv~lL~-----~~~~~~~---al~iL~----nLa~~~e 578 (710)
.+.++.. ..+.+.+++++.|++. .+ +....+.-.|-+.+-++.|. |++++.. .-..|. .||.-++
T Consensus 242 ~iVk~~~keKV~Rlc~~Iv~n~~dK~pK~~I~~~lll~~~~k~vq~L~erkysDEel~~di~~i~s~l~~~~k~l~~fD~ 321 (432)
T COG5231 242 AIVKERAKEKVLRLCCGIVANVLDKSPKGYIFSPLLLNDISKCVQVLLERKYSDEELVIDIERIRSRLVQNTKKLCIFDN 321 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhHhhcchHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhhhhhhHHHH
Confidence 8886553 4567788999999986 22 34445555666666677763 3333111 111111 1111111
Q ss_pred ------------------------hHHHHHhh-cCChHHHHHHhhcCCHH-HHHHHHHHHHHHhcCChHHHHHHHhCCch
Q 036199 579 ------------------------ARVCVVET-SGCLPSVAELLEIGSEE-DQEHAVAILLCLCSQRDQYCKLVMNEGVI 632 (710)
Q Consensus 579 ------------------------~r~~i~~~-~g~I~~Lv~lL~~~s~~-~ke~A~~aL~~Lc~~~~~~~~~v~~~G~v 632 (710)
+...+... -..+..|.++|+...+. .-..|+.=+..+-...|+...++.+.|+=
T Consensus 322 Y~~ELdsg~l~wSp~H~~~dFWs~N~d~l~kdny~i~k~L~~~lq~n~~nt~i~vAc~Di~~~Vr~~PE~~~vl~Kyg~k 401 (432)
T COG5231 322 YLNELDSGRLEWSPYHHKKDFWSTNLDMLIKDNYEIVKVLKKYLQSNNPNTWICVACSDIFQLVRASPEINAVLSKYGVK 401 (432)
T ss_pred HHHHHhhCcccCCCcccccCchhhhHHHHhhhhHHHHHHHHHHHhcCCCCceEeeeHhhHHHHHHhCchHHHHHHHhhhH
Confidence 11222221 12456777788775554 34456666677777778889999999999
Q ss_pred HHHHHHhhcCCHHHHHHHHHHHHHh
Q 036199 633 PSLVKISVYGNDKAKVSALELRRLL 657 (710)
Q Consensus 633 ~~Lv~L~~~gt~~~k~kA~~LL~~l 657 (710)
..+++|..+.++++|-.|.+.++.+
T Consensus 402 ~~im~L~nh~d~~VkfeAl~a~q~~ 426 (432)
T COG5231 402 EIIMNLINHDDDDVKFEALQALQTC 426 (432)
T ss_pred HHHHHHhcCCCchhhHHHHHHHHHH
Confidence 9999999999999999999988754
|
|
| >PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised | Back alignment and domain information |
|---|
Probab=81.54 E-value=5.1 Score=41.08 Aligned_cols=87 Identities=17% Similarity=0.151 Sum_probs=67.5
Q ss_pred HHHHHHHHHHHHhcCcchHHHHHhhc------CChHHHHHHhh-cCCHHHHHHHHHHHHHHhcCChH-HHHHHHhCCchH
Q 036199 562 LAVSCLVILKNMCNTEHARVCVVETS------GCLPSVAELLE-IGSEEDQEHAVAILLCLCSQRDQ-YCKLVMNEGVIP 633 (710)
Q Consensus 562 ~~~~al~iL~nLa~~~e~r~~i~~~~------g~I~~Lv~lL~-~~s~~~ke~A~~aL~~Lc~~~~~-~~~~v~~~G~v~ 633 (710)
-++.|+.+|..|+-.+.+-..|..+. ..+..|+++|. .+++..+|-|+.+|.+||..+.. .+....+.+.|.
T Consensus 140 PqrlaLEaLcKLsV~e~NVDliLaTpp~sRlE~l~~~L~r~l~~~e~~v~REfAvvlL~~La~~~~~~~r~iA~q~~~i~ 219 (257)
T PF12031_consen 140 PQRLALEALCKLSVIENNVDLILATPPFSRLERLFHTLVRLLGMREDQVCREFAVVLLSNLAQGDEAAARAIAMQKPCIS 219 (257)
T ss_pred HHHHHHHHHHHhheeccCcceeeeCCCHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhchHH
Confidence 38999999999999888887776632 13445555554 36888999999999999999865 457788899999
Q ss_pred HHHHHhhcCCHHHHH
Q 036199 634 SLVKISVYGNDKAKV 648 (710)
Q Consensus 634 ~Lv~L~~~gt~~~k~ 648 (710)
.|+....++..-+..
T Consensus 220 ~Li~FiE~a~~~~~~ 234 (257)
T PF12031_consen 220 HLIAFIEDAEQNAHQ 234 (257)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999998876555443
|
This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM. |
| >PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane | Back alignment and domain information |
|---|
Probab=81.50 E-value=3.7 Score=37.59 Aligned_cols=69 Identities=12% Similarity=0.066 Sum_probs=56.4
Q ss_pred ChHHHHHHhhc-CCHHHHHHHHHHHHHHhcCChHHHHHHHhCCchHHHHHHhhcCCHHHHHHHHHHHHHh
Q 036199 589 CLPSVAELLEI-GSEEDQEHAVAILLCLCSQRDQYCKLVMNEGVIPSLVKISVYGNDKAKVSALELRRLL 657 (710)
Q Consensus 589 ~I~~Lv~lL~~-~s~~~ke~A~~aL~~Lc~~~~~~~~~v~~~G~v~~Lv~L~~~gt~~~k~kA~~LL~~l 657 (710)
.+..|+++|.. .++.....|+.=|..++...+.-+..+.+.|+=..++.|+.+.++.+|..|...++.+
T Consensus 44 llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQkl 113 (119)
T PF11698_consen 44 LLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKL 113 (119)
T ss_dssp HHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 46788888843 5777777788888888988888888999999999999999999999999999988844
|
ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A. |
| >KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=81.23 E-value=1 Score=48.85 Aligned_cols=49 Identities=14% Similarity=0.369 Sum_probs=40.0
Q ss_pred CCcccccCCccccCCce-----e---cCCCCccchhhHHHHhhhC------CCCCCCCCCccC
Q 036199 266 PEVFKCPLSLRLMYDPV-----V---IESGQTFERMWIQKWFEEG------NHTCPKTKMKLV 314 (710)
Q Consensus 266 p~~f~CPI~~~~m~DPV-----~---~~~G~ty~r~~I~~w~~~g------~~~cP~t~~~l~ 314 (710)
-.++.|=||++.-.+++ - ..|.|+||-.||.+|-... ...||.|+.+..
T Consensus 159 s~~k~CGICme~i~ek~~~~~rfgilpnC~H~~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s~ 221 (344)
T KOG1039|consen 159 SSEKECGICMETINEKAASERRFGILPNCNHSFCLNCIRKWRQATQFESKTSKSCPFCRVPSS 221 (344)
T ss_pred cccccceehhhhccccchhhhhcccCCCcchhhhhcHhHhhhhhhccccccccCCCcccCccc
Confidence 46799999999999998 3 4699999999999997422 367999987543
|
|
| >PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 [] | Back alignment and domain information |
|---|
Probab=81.21 E-value=41 Score=36.21 Aligned_cols=170 Identities=17% Similarity=0.133 Sum_probs=86.6
Q ss_pred HHHHHHHHHHHHHHhccCCCCCcc--ccccchHHHHHHhccCcHHH--HHHHHHHHhccC---chhhHHHhhhCcHHHHH
Q 036199 441 SRAQRIGCRLLLAFVSKNRSGIPY--LNEDLFSLLASFLHSAAATE--ETLAILVALSSY---AYFISKIVASGALASIL 513 (710)
Q Consensus 441 ~~~q~~A~~~L~nL~~~~~~k~~i--~~~gaI~~LV~lL~s~~~~~--~Aa~~L~~Ls~~---~~nk~~I~~~GaI~~LV 513 (710)
...++.|+..|.++......-..+ ...-.+..+.+.++.|...+ .|+.++.-|+.. ......+. ....|.|.
T Consensus 57 ~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~~ei~-~~~~~~L~ 135 (309)
T PF05004_consen 57 SSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAGEDSEEIF-EELKPVLK 135 (309)
T ss_pred HHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccHHHHH-HHHHHHHH
Confidence 455555555555543221110111 12335677778888777643 444545444432 23333333 24678888
Q ss_pred HhhcCCC--HHHHHHHHHHHHHhccC----cccccccccccchhchHH--hh------------cCchHHHHHHHHHHHH
Q 036199 514 NMLDSPN--GKFQELAIKILHNLSSD----VDIQSHIAPSEFLPKLVP--FL------------KDATLAVSCLVILKNM 573 (710)
Q Consensus 514 ~LL~~~~--~~~~~~A~~aL~nLs~~----~en~~~iv~aG~V~~Lv~--lL------------~~~~~~~~al~iL~nL 573 (710)
.++.+++ +..+..++.+|.-++.. .+..... ...+..+.. .+ .++.+...|+..-+.|
T Consensus 136 ~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~--~~~le~if~~~~~~~~~~~~~~~~~~~~~l~~aAL~aW~lL 213 (309)
T PF05004_consen 136 RILTDSSASPKARAACLEALAICTFVGGSDEEETEEL--MESLESIFLLSILKSDGNAPVVAAEDDAALVAAALSAWALL 213 (309)
T ss_pred HHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHH--HHHHHHHHHHHhcCcCCCcccccCCCccHHHHHHHHHHHHH
Confidence 8887654 34445555555554431 1111100 011110000 01 1234566666666666
Q ss_pred hc-CcchH-HHHHhhcCChHHHHHHhhcCCHHHHHHHHHHHHHH
Q 036199 574 CN-TEHAR-VCVVETSGCLPSVAELLEIGSEEDQEHAVAILLCL 615 (710)
Q Consensus 574 a~-~~e~r-~~i~~~~g~I~~Lv~lL~~~s~~~ke~A~~aL~~L 615 (710)
.. .+... ....+ ..++.|+.+|.+.+..+|-.|-.+|.-|
T Consensus 214 lt~~~~~~~~~~~~--~~~~~l~~lL~s~d~~VRiAAGEaiAll 255 (309)
T PF05004_consen 214 LTTLPDSKLEDLLE--EALPALSELLDSDDVDVRIAAGEAIALL 255 (309)
T ss_pred HhcCCHHHHHHHHH--HHHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 65 33322 23333 4699999999999999998877776554
|
The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis []. |
| >KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=81.10 E-value=0.93 Score=50.18 Aligned_cols=51 Identities=14% Similarity=0.374 Sum_probs=37.9
Q ss_pred CCCcccccCCcccc-----------------CCceecCCCCccchhhHHHHhhhCCCCCCCCCCccCC
Q 036199 265 IPEVFKCPLSLRLM-----------------YDPVVIESGQTFERMWIQKWFEEGNHTCPKTKMKLVC 315 (710)
Q Consensus 265 ~p~~f~CPI~~~~m-----------------~DPV~~~~G~ty~r~~I~~w~~~g~~~cP~t~~~l~~ 315 (710)
+-..--|+||+.-. ++=..++|.|.|-|.|+++|.+.-.-.||+|+.+|++
T Consensus 568 ~~~t~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tPC~HifH~~CL~~WMd~ykl~CPvCR~pLPp 635 (636)
T KOG0828|consen 568 VRRTNDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTPCHHIFHRQCLLQWMDTYKLICPVCRCPLPP 635 (636)
T ss_pred hhccccceEeccccceeeccCcchhhhhhhhccccccchHHHHHHHHHHHHHhhhcccCCccCCCCCC
Confidence 44446799997521 1123458999999999999998444589999999875
|
|
| >PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5 | Back alignment and domain information |
|---|
Probab=81.07 E-value=2.9 Score=34.86 Aligned_cols=62 Identities=15% Similarity=0.206 Sum_probs=54.4
Q ss_pred HHHHHHHHHHhccCcccccccccccchhchHHhhcC---chHHHHHHHHHHHHhcCcchHHHHHh
Q 036199 524 QELAIKILHNLSSDVDIQSHIAPSEFLPKLVPFLKD---ATLAVSCLVILKNMCNTEHARVCVVE 585 (710)
Q Consensus 524 ~~~A~~aL~nLs~~~en~~~iv~aG~V~~Lv~lL~~---~~~~~~al~iL~nLa~~~e~r~~i~~ 585 (710)
.+.|++|+.++++.+.....+-+.++|+.++++... -.++--|.-+|..++.+.+|...+.+
T Consensus 4 lKaaLWaighIgss~~G~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~T~~G~~~L~~ 68 (73)
T PF14668_consen 4 LKAALWAIGHIGSSPLGIQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISSTEEGAEILDE 68 (73)
T ss_pred HHHHHHHHHhHhcChHHHHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhCCHHHHHHHHH
Confidence 578999999999998888888889999999999854 35688899999999999999988766
|
|
| >PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane | Back alignment and domain information |
|---|
Probab=80.94 E-value=3.7 Score=37.64 Aligned_cols=77 Identities=18% Similarity=0.176 Sum_probs=55.5
Q ss_pred cccccccc--ccchhchHHhhcC---chHHHHHHHHHHHHhc-CcchHHHHHhhcCChHHHHHHhhcCCHHHHHHHHHHH
Q 036199 539 DIQSHIAP--SEFLPKLVPFLKD---ATLAVSCLVILKNMCN-TEHARVCVVETSGCLPSVAELLEIGSEEDQEHAVAIL 612 (710)
Q Consensus 539 en~~~iv~--aG~V~~Lv~lL~~---~~~~~~al~iL~nLa~-~~e~r~~i~~~~g~I~~Lv~lL~~~s~~~ke~A~~aL 612 (710)
+|..++-+ -..+..|+++|.. +....-|+.=|+.++. .|+||..+-+ .|+=..+.++|.+.+++++.+|+-++
T Consensus 32 ENa~kf~~~~~~llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~-lg~K~~vM~Lm~h~d~eVr~eAL~av 110 (119)
T PF11698_consen 32 ENADKFEENNFELLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEK-LGAKERVMELMNHEDPEVRYEALLAV 110 (119)
T ss_dssp HHSGGGSSGGGHHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHH-HSHHHHHHHHTS-SSHHHHHHHHHHH
T ss_pred HHHHHHHHcccHHHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHh-cChHHHHHHHhcCCCHHHHHHHHHHH
Confidence 35555544 3467889999943 3345556667777877 7899888866 78888999999999999999999887
Q ss_pred HHHh
Q 036199 613 LCLC 616 (710)
Q Consensus 613 ~~Lc 616 (710)
..+-
T Consensus 111 Qklm 114 (119)
T PF11698_consen 111 QKLM 114 (119)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6553
|
ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A. |
| >KOG0396 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=80.88 E-value=1.2 Score=47.97 Aligned_cols=49 Identities=22% Similarity=0.327 Sum_probs=42.1
Q ss_pred cccccCCccccCC---ceecCCCCccchhhHHHHhhhCCCCCCCCCCccCCC
Q 036199 268 VFKCPLSLRLMYD---PVVIESGQTFERMWIQKWFEEGNHTCPKTKMKLVCQ 316 (710)
Q Consensus 268 ~f~CPI~~~~m~D---PV~~~~G~ty~r~~I~~w~~~g~~~cP~t~~~l~~~ 316 (710)
.+.|.|++++|-| |++.+.|++|-..+|+.|-...+-+||.++..++..
T Consensus 330 ~Lvc~isge~md~~N~P~lfpnG~Vyg~~~L~s~~~~~~i~dP~~~k~f~~~ 381 (389)
T KOG0396|consen 330 RLVCSISGELMDDDNPPHLFPNGYVYGTKALESLNEDDGIGDPRTKKVFRYS 381 (389)
T ss_pred HHHhhccccccCCCCCcccccCceeehhHHHHhhcccCCCcCCCCCccccHH
Confidence 3789999999987 999999999999999999664447899999877653
|
|
| >PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 [] | Back alignment and domain information |
|---|
Probab=80.68 E-value=3 Score=28.33 Aligned_cols=29 Identities=28% Similarity=0.307 Sum_probs=25.3
Q ss_pred hHHHHHHhhcCCHHHHHHHHHHHHHHhcC
Q 036199 590 LPSVAELLEIGSEEDQEHAVAILLCLCSQ 618 (710)
Q Consensus 590 I~~Lv~lL~~~s~~~ke~A~~aL~~Lc~~ 618 (710)
+|.+++++...++++|..|+.+|..++..
T Consensus 2 lp~l~~~l~D~~~~VR~~a~~~l~~i~~~ 30 (31)
T PF02985_consen 2 LPILLQLLNDPSPEVRQAAAECLGAIAEH 30 (31)
T ss_dssp HHHHHHHHT-SSHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence 68899999999999999999999988753
|
Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B .... |
| >KOG0825 consensus PHD Zn-finger protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=80.64 E-value=0.39 Score=55.65 Aligned_cols=47 Identities=19% Similarity=0.347 Sum_probs=39.5
Q ss_pred cccccCCccccCCceec---CCCCccchhhHHHHhhhCCCCCCCCCCccCC
Q 036199 268 VFKCPLSLRLMYDPVVI---ESGQTFERMWIQKWFEEGNHTCPKTKMKLVC 315 (710)
Q Consensus 268 ~f~CPI~~~~m~DPV~~---~~G~ty~r~~I~~w~~~g~~~cP~t~~~l~~ 315 (710)
+-.||+|..-+.|-.+. .|+|-||.+||..|-. ...|||.++..+..
T Consensus 123 ~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~sWsR-~aqTCPiDR~EF~~ 172 (1134)
T KOG0825|consen 123 ENQCPNCLKSCNDQLEESEKHTAHYFCEECVGSWSR-CAQTCPVDRGEFGE 172 (1134)
T ss_pred hhhhhHHHHHHHHHhhccccccccccHHHHhhhhhh-hcccCchhhhhhhe
Confidence 46799999999998774 7999999999999976 46699999877654
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 710 | ||||
| 1t1h_A | 78 | Nmr Solution Structure Of The U Box Domain From Atp | 2e-17 | ||
| 4db8_A | 252 | Designed Armadillo-Repeat Protein Length = 252 | 1e-06 | ||
| 4db9_A | 210 | Designed Armadillo Repeat Protein (Yiiim3aiii) Leng | 3e-05 | ||
| 4dba_A | 210 | Designed Armadillo Repeat Protein (Yiim3aii) Length | 3e-05 | ||
| 4db6_A | 210 | Designed Armadillo Repeat Protein (Yiiim3aii) Lengt | 6e-05 | ||
| 2c2l_A | 281 | Crystal Structure Of The Chip U-Box E3 Ubiquitin Li | 2e-04 | ||
| 2c2v_S | 78 | Crystal Structure Of The Chip-Ubc13-Uev1a Complex L | 3e-04 | ||
| 2f42_A | 179 | Dimerization And U-Box Domains Of Zebrafish C-Termi | 7e-04 | ||
| 2oxq_C | 80 | Structure Of The Ubch5 :chip U-Box Complex Length = | 7e-04 |
| >pdb|1T1H|A Chain A, Nmr Solution Structure Of The U Box Domain From Atpub14, An Armadillo Repeat Containing Protein From Arabidopsis Thaliana Length = 78 | Back alignment and structure |
|
| >pdb|4DB8|A Chain A, Designed Armadillo-Repeat Protein Length = 252 | Back alignment and structure |
|
| >pdb|4DB9|A Chain A, Designed Armadillo Repeat Protein (Yiiim3aiii) Length = 210 | Back alignment and structure |
|
| >pdb|4DBA|A Chain A, Designed Armadillo Repeat Protein (Yiim3aii) Length = 210 | Back alignment and structure |
|
| >pdb|4DB6|A Chain A, Designed Armadillo Repeat Protein (Yiiim3aii) Length = 210 | Back alignment and structure |
|
| >pdb|2C2L|A Chain A, Crystal Structure Of The Chip U-Box E3 Ubiquitin Ligase Length = 281 | Back alignment and structure |
|
| >pdb|2C2V|S Chain S, Crystal Structure Of The Chip-Ubc13-Uev1a Complex Length = 78 | Back alignment and structure |
|
| >pdb|2F42|A Chain A, Dimerization And U-Box Domains Of Zebrafish C-Terminal Of Hsp70 Interacting Protein Length = 179 | Back alignment and structure |
|
| >pdb|2OXQ|C Chain C, Structure Of The Ubch5 :chip U-Box Complex Length = 80 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2 Length = 78 | Back alignment and structure |
|---|
Score = 117 bits (296), Expect = 5e-32
Identities = 36/68 (52%), Positives = 49/68 (72%)
Query: 265 IPEVFKCPLSLRLMYDPVVIESGQTFERMWIQKWFEEGNHTCPKTKMKLVCQSLTPNTAM 324
PE F+CP+SL LM DPV++ +GQT+ER IQKW + G+ TCPK++ L+ LTPN +
Sbjct: 5 FPEYFRCPISLELMKDPVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLHAGLTPNYVL 64
Query: 325 KDLISKWC 332
K LI+ WC
Sbjct: 65 KSLIALWC 72
|
| >2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C Length = 179 | Back alignment and structure |
|---|
Score = 115 bits (290), Expect = 5e-30
Identities = 32/155 (20%), Positives = 60/155 (38%), Gaps = 3/155 (1%)
Query: 179 AILIEKRSIKKLLDKVGDSDQSKIKVLKYLFYLLKKYGNSVLGEQKDNACAQEEGSYTV- 237
A+ I K+ +++ + ++ YL L+ L ++ + + G
Sbjct: 18 ALRIAKKKRWNSIEE--KRISQENELHAYLSKLILAEKERELDDRVKQSDDSQNGGDISK 75
Query: 238 CSQSFEVDSRVGDRKFGAQTNNLSRAIIPEVFKCPLSLRLMYDPVVIESGQTFERMWIQK 297
+ D F + IP+ +S LM +P + SG T++R I++
Sbjct: 76 MKSKHDKYLMDMDELFSQVDEKRKKREIPDYLCGKISFELMREPCITPSGITYDRKDIEE 135
Query: 298 WFEEGNHTCPKTKMKLVCQSLTPNTAMKDLISKWC 332
+ H P T+ L L PN AMK++I +
Sbjct: 136 HLQRVGHFDPVTRSPLTQDQLIPNLAMKEVIDAFI 170
|
| >2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus} Length = 85 | Back alignment and structure |
|---|
Score = 98.2 bits (245), Expect = 6e-25
Identities = 21/70 (30%), Positives = 30/70 (42%), Gaps = 1/70 (1%)
Query: 265 IPEVFKCPLSLRLMYDPVVIESGQTFERMWIQKWFEEGNHTCPKTKMKLVCQSLTPNTAM 324
P+ F+ PL LM DPV + SG +R I + + T P + L L P +
Sbjct: 11 APDEFRDPLMDTLMTDPVRLPSGTVMDRSIILRHL-LNSPTDPFNRQMLTESMLEPVPEL 69
Query: 325 KDLISKWCMN 334
K+ I W
Sbjct: 70 KEQIQAWMRE 79
|
| >2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B Length = 100 | Back alignment and structure |
|---|
Score = 96.7 bits (241), Expect = 3e-24
Identities = 23/94 (24%), Positives = 37/94 (39%), Gaps = 1/94 (1%)
Query: 241 SFEVDSRVGDRKFGAQTNNLSRAIIPEVFKCPLSLRLMYDPVVIESGQTFERMWIQKWFE 300
S + +V + + + P+ F+ PL LM DPV + SG +R I +
Sbjct: 2 SHKFAEKVEEIVAKNARAEIDYSDAPDEFRDPLMDTLMTDPVRLPSGTIMDRSIILRHL- 60
Query: 301 EGNHTCPKTKMKLVCQSLTPNTAMKDLISKWCMN 334
+ T P + L L P +K+ I W
Sbjct: 61 LNSPTDPFNRQTLTESMLEPVPELKEQIQAWMRE 94
|
| >1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2 Length = 98 | Back alignment and structure |
|---|
Score = 88.3 bits (219), Expect = 2e-21
Identities = 21/69 (30%), Positives = 32/69 (46%), Gaps = 2/69 (2%)
Query: 265 IPEVFKCPLSLRLMYDPVVIESGQ-TFERMWIQKWFEEGNHTCPKTKMKLVCQSLTPNTA 323
+ F P+ LM DPVV+ S + T +R I + T P + L + PNT
Sbjct: 19 ACDEFLDPIMSTLMCDPVVLPSSRVTVDRSTIARHLLSD-QTDPFNRSPLTMDQIRPNTE 77
Query: 324 MKDLISKWC 332
+K+ I +W
Sbjct: 78 LKEKIQRWL 86
|
| >1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529 | Back alignment and structure |
|---|
Score = 89.5 bits (222), Expect = 7e-19
Identities = 45/258 (17%), Positives = 84/258 (32%), Gaps = 27/258 (10%)
Query: 425 VEPLIRFLRDARDLHDSRAQRIGCRLLLAFVSKNRS---------GIPYLNEDLFSLLAS 475
+ L++ L L + G+ + L
Sbjct: 103 IPALVKMLGS----PVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVK 158
Query: 476 FLHSAAATEETLAILVALSSYAYFISKIVASGALASILNMLDSPN-GKFQELAIKILHNL 534
FL L IL + + I+ASG +++N++ + K ++L L
Sbjct: 159 FLAITTDC---LQILAYGNQES--KLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVL 213
Query: 535 SSDVDIQSHIAPSEFLPKLVPFLKDATLAV--SCLVILKNMCNTEHARVCVVETSGCLPS 592
S + I + + L L D + + +CL L+N+ + + G L +
Sbjct: 214 SVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQE---GMEGLLGT 270
Query: 593 VAELLEIGSEEDQEHAVAILLCLCSQRDQYCKLVMNEGVIPSLVKISVYGNDKAKV---S 649
+ +LL A IL L + +V G I +LV+ + D+ + +
Sbjct: 271 LVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPA 330
Query: 650 ALELRRLLRDVAYSVEQQ 667
LR L + Q
Sbjct: 331 ICALRHLTSRHQEAEMAQ 348
|
| >1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529 | Back alignment and structure |
|---|
Score = 83.3 bits (206), Expect = 6e-17
Identities = 43/239 (17%), Positives = 79/239 (33%), Gaps = 19/239 (7%)
Query: 425 VEPLIRFLRDARDLHDSRAQRIGCRLLLAFVSKNRSGIPYL-NEDLFSLLASFLHSAAAT 483
+ L+ +R + +L +S S P + L L +
Sbjct: 187 PQALVNIMRT----YTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQR 242
Query: 484 --EETLAILVALSSYAYFISKIVASGALASILNMLDSPNGKFQELAIKILHNLSS-DVDI 540
+ L L LS A + G L +++ +L S + A IL NL+ +
Sbjct: 243 LVQNCLWTLRNLSDAA--TKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKN 300
Query: 541 QSHIAPSEFLPKLVPFLKDAT----LAVSCLVILKNMC----NTEHARVCVVETSGCLPS 592
+ + + LV + A + + L+++ E A+ V LP
Sbjct: 301 KMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRL-HYGLPV 359
Query: 593 VAELLEIGSEEDQEHAVAILLCLCSQRDQYCKLVMNEGVIPSLVKISVYGNDKAKVSAL 651
V +LL S A L+ + + +G IP LV++ V + +
Sbjct: 360 VVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTS 418
|
| >1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529 | Back alignment and structure |
|---|
Score = 83.3 bits (206), Expect = 7e-17
Identities = 24/154 (15%), Positives = 59/154 (38%), Gaps = 5/154 (3%)
Query: 502 KIVASGALASILNMLDSPNGKFQELAIKILHNLSS-DVDIQSHIAPSEFLPKLVPFLK-- 558
+A+ A+ + +L+ + A ++H LS + + + + + +V ++
Sbjct: 12 AELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNT 71
Query: 559 -DATLAVSCLVILKNMCNTEHARVCVVETSGCLPSVAELLEIGSEEDQEHAVAILLCLCS 617
D A L N+ + + + + SG +P++ ++L + +A+ L L
Sbjct: 72 NDVETARCTAGTLHNLSHHREGLLAIFK-SGGIPALVKMLGSPVDSVLFYAITTLHNLLL 130
Query: 618 QRDQYCKLVMNEGVIPSLVKISVYGNDKAKVSAL 651
++ V G + +V + N K
Sbjct: 131 HQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITT 164
|
| >1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529 | Back alignment and structure |
|---|
Score = 78.3 bits (193), Expect = 3e-15
Identities = 41/267 (15%), Positives = 78/267 (29%), Gaps = 41/267 (15%)
Query: 425 VEPLIRFLRDARDLHDSRAQRIGCRLLLAFVSKNRSGIPYLNED-----LFSLLASFLHS 479
+ L++ L D +L N + + L +
Sbjct: 268 LGTLVQLLGSD----DINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDR 323
Query: 480 AAATEETLAILVALSS----YAYFISKIVASGALASILNMLDSPNGKFQELA-IKILHNL 534
TE + L L+S + + L ++ +L P+ A + ++ NL
Sbjct: 324 EDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNL 383
Query: 535 SSDVDIQSHIAPSEFLPKLVPFLKDAT------------------------LAVSCLVIL 570
+ + + +P+LV L A + C L
Sbjct: 384 ALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGAL 443
Query: 571 KNMCNTEHARVCVVETSGCLPSVAELLEIGSEEDQEHAVAILLCLCSQRDQYCKLVMNEG 630
+ H R+ + +P +LL E Q A +L L + + + EG
Sbjct: 444 HILARDVHNRIVIRG-LNTIPLFVQLLYSPIENIQRVAAGVLCELAQ-DKEAAEAIEAEG 501
Query: 631 VIPSLVKISVYGNDKAKVSALE-LRRL 656
L ++ N+ A L R+
Sbjct: 502 ATAPLTELLHSRNEGVATYAAAVLFRM 528
|
| >1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529 | Back alignment and structure |
|---|
Score = 77.5 bits (191), Expect = 4e-15
Identities = 36/236 (15%), Positives = 80/236 (33%), Gaps = 15/236 (6%)
Query: 425 VEPLIRFLRDARDLHDSRAQRIGCRLLLAFVSKNRSGIPYLNED-----LFSLLASFLHS 479
+ L + L D D ++ K S + + + + +
Sbjct: 19 IPELTKLLND----EDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQN-TND 73
Query: 480 AAATEETLAILVALSSYAYFISKIVASGALASILNMLDSPNGKFQELAIKILHNLSSDVD 539
T L LS + + I SG + +++ ML SP AI LHNL +
Sbjct: 74 VETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQE 133
Query: 540 -IQSHIAPSEFLPKLVPFLKDATLAV--SCLVILKNMC-NTEHARVCVVETSGCLPSVAE 595
+ + + L K+V L + L+ + + +++ ++ SG ++
Sbjct: 134 GAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILA-SGGPQALVN 192
Query: 596 LLEIGSEEDQEHAVAILLCLCSQRDQYCKLVMNEGVIPSLVKISVYGNDKAKVSAL 651
++ + E + +L + S ++ G + +L + + + L
Sbjct: 193 IMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCL 248
|
| >1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529 | Back alignment and structure |
|---|
Score = 44.0 bits (104), Expect = 2e-04
Identities = 23/86 (26%), Positives = 29/86 (33%), Gaps = 4/86 (4%)
Query: 452 LAFVSKNRSGIPYLN--EDLFSLLASFLHSAAATEETLAILVALSSYAYFISKIVASGAL 509
LA NR I LN LL S +L L+ I A GA
Sbjct: 446 LARDVHNRIVIRGLNTIPLFVQLLYS--PIENIQRVAAGVLCELAQDKEAAEAIEAEGAT 503
Query: 510 ASILNMLDSPNGKFQELAIKILHNLS 535
A + +L S N A +L +S
Sbjct: 504 APLTELLHSRNEGVATYAAAVLFRMS 529
|
| >2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644 | Back alignment and structure |
|---|
Score = 87.7 bits (217), Expect = 4e-18
Identities = 48/274 (17%), Positives = 90/274 (32%), Gaps = 27/274 (9%)
Query: 409 LEHDNQVSHSLSSTNFVEPLIRFLRDARDLHDSRAQRIGCRLLLAFVSKNRS-------- 460
L H + ++ + + L++ L L +
Sbjct: 84 LSHHREGLLAIFKSGGIPALVKMLGS----PVDSVLFYAITTLHNLLLHQEGAKMAVRLA 139
Query: 461 -GIPYLNEDLFSLLASFLHSAAATEETLAILVALSSYAYFISKIVASGALASILNMLDSP 519
G+ + L FL L IL + + I+ASG +++N++ +
Sbjct: 140 GGLQKMVALLNKTNVKFLAITTDC---LQILAYGNQES--KLIILASGGPQALVNIMRTY 194
Query: 520 N-GKFQELAIKILHNLSSDVDIQSHIAPSEFLPKLVPFLKDATLAV--SCLVILKNMCNT 576
K ++L LS + I + + L L D + + +CL L+N+
Sbjct: 195 TYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLS-- 252
Query: 577 EHARVCVVETSGCLPSVAELLEIGSEEDQEHAVAILLCLCSQRDQYCKLVMNEGVIPSLV 636
+ A G L ++ +LL A IL L + +V G I +LV
Sbjct: 253 DAATKQEGM-EGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALV 311
Query: 637 KISVYGNDKAKV---SALELRRLLRDVAYSVEQQ 667
+ + D+ + + LR L + Q
Sbjct: 312 RTVLRAGDREDITEPAICALRHLTSRHQEAEMAQ 345
|
| >2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644 | Back alignment and structure |
|---|
Score = 82.7 bits (204), Expect = 2e-16
Identities = 26/153 (16%), Positives = 58/153 (37%), Gaps = 5/153 (3%)
Query: 503 IVASGALASILNMLDSPNGKFQELAIKILHNLSSDVDIQSHIAPSE-FLPKLVPFLK--- 558
+A+ A+ + +L+ + A ++H LS + I S + +V ++
Sbjct: 10 ELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTN 69
Query: 559 DATLAVSCLVILKNMCNTEHARVCVVETSGCLPSVAELLEIGSEEDQEHAVAILLCLCSQ 618
D A L N+ + + + + SG +P++ ++L + +A+ L L
Sbjct: 70 DVETARCTAGTLHNLSHHREGLLAIFK-SGGIPALVKMLGSPVDSVLFYAITTLHNLLLH 128
Query: 619 RDQYCKLVMNEGVIPSLVKISVYGNDKAKVSAL 651
++ V G + +V + N K
Sbjct: 129 QEGAKMAVRLAGGLQKMVALLNKTNVKFLAITT 161
|
| >2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644 | Back alignment and structure |
|---|
Score = 81.9 bits (202), Expect = 3e-16
Identities = 45/242 (18%), Positives = 80/242 (33%), Gaps = 23/242 (9%)
Query: 425 VEPLIRFLRDARDLHDSRAQRIGCRLLLAFVSKNRSGIPYLNED-----LFSLLASFLHS 479
+ L+ +R + +L +S S P + E L L S
Sbjct: 184 PQALVNIMRT----YTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTD--PS 237
Query: 480 AAATEETLAILVALSSYAYFISKIVASGALASILNMLDSPNGKFQELAIKILHNLSS-DV 538
+ L L LS A + G L +++ +L S + A IL NL+ +
Sbjct: 238 QRLVQNCLWTLRNLSDAA--TKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNY 295
Query: 539 DIQSHIAPSEFLPKLVPFLKDAT----LAVSCLVILKNMC----NTEHARVCVVETSGCL 590
+ + + LV + A + + L+++ E A+ V L
Sbjct: 296 KNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRL-HYGL 354
Query: 591 PSVAELLEIGSEEDQEHAVAILLCLCSQRDQYCKLVMNEGVIPSLVKISVYGNDKAKVSA 650
P V +LL S A L+ + + +G IP LV++ V + +
Sbjct: 355 PVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRT 414
Query: 651 LE 652
Sbjct: 415 SM 416
|
| >2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644 | Back alignment and structure |
|---|
Score = 78.1 bits (192), Expect = 4e-15
Identities = 36/235 (15%), Positives = 76/235 (32%), Gaps = 13/235 (5%)
Query: 425 VEPLIRFLRDARDLHDSRAQRIGCRLLLAFVSKNRSGIPYLNED-----LFSLLASFLHS 479
+ L + L D D ++ K S + + + + +
Sbjct: 16 IPELTKLLND----EDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQN-TND 70
Query: 480 AAATEETLAILVALSSYAYFISKIVASGALASILNMLDSPNGKFQELAIKILHNLSSDVD 539
T L LS + + I SG + +++ ML SP AI LHNL +
Sbjct: 71 VETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQE 130
Query: 540 -IQSHIAPSEFLPKLVPFLKDATLAV--SCLVILKNMCNTEHARVCVVETSGCLPSVAEL 596
+ + + L K+V L + L+ + ++ SG ++ +
Sbjct: 131 GAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNI 190
Query: 597 LEIGSEEDQEHAVAILLCLCSQRDQYCKLVMNEGVIPSLVKISVYGNDKAKVSAL 651
+ + E + +L + S ++ G + +L + + + L
Sbjct: 191 MRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCL 245
|
| >2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644 | Back alignment and structure |
|---|
Score = 77.3 bits (190), Expect = 8e-15
Identities = 41/270 (15%), Positives = 84/270 (31%), Gaps = 34/270 (12%)
Query: 425 VEPLIRFLRDARDLHDSRAQRIGCRLLLAFVSKNRSGIPY----LNEDLFSLLASFLHSA 480
+E L+R + A D L S+++ ++ LH
Sbjct: 307 IEALVRTVLRAGD--REDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPP 364
Query: 481 ---AATEETLAILVALSSYAYFISKIVASGALASILNMLDSPNGKFQ------------- 524
+ T+ ++ L+ + + GA+ ++ +L + Q
Sbjct: 365 SHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFV 424
Query: 525 ---------ELAIKILHNLSSDVDIQSHIAPSEFLPKLVPFLKDATLAV--SCLVILKNM 573
E LH L+ DV + I +P V L + +L +
Sbjct: 425 EGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCEL 484
Query: 574 CNTEHARVCVVETSGCLPSVAELLEIGSEEDQEHAVAILLCLCSQRDQYCKLVMNEGVIP 633
+ A + G + ELL +E +A A+L + + Q K ++ +
Sbjct: 485 AQDKEAAEAIEA-EGATAPLTELLHSRNEGVATYAAAVLFRMSEDKPQDYKKRLSVELTS 543
Query: 634 SLVKISVYGNDKAKVSALELRRLLRDVAYS 663
SL + ++ L++ + Y
Sbjct: 544 SLFRTEPMAWNETADLGLDIGAQGEPLGYR 573
|
| >2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644 | Back alignment and structure |
|---|
Score = 60.7 bits (147), Expect = 1e-09
Identities = 30/215 (13%), Positives = 46/215 (21%), Gaps = 26/215 (12%)
Query: 409 LEHDNQVSHSLSSTNFVEPLIRFLRDARDLHDSRAQRIGCRLLLAFVSKNRSGIPYLNED 468
L L + L++ L A QR
Sbjct: 380 LALCPANHAPLREQGAIPRLVQLLVRA----HQDTQRRTSMGGTQQ-------------- 421
Query: 469 LFSLLASFLHSAAATEETLAILVALSSYAYFISKIVASGALASILNMLDSPNGKFQELAI 528
+ E L L+ + I + + +L SP Q +A
Sbjct: 422 ---QFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAA 478
Query: 529 KILHNLSSDVDIQSHIAPSEFLPKLVPFLKDATLAV--SCLVILKNMCNTEHARVCVVET 586
+L L+ D + I L L V +L M + +
Sbjct: 479 GVLCELAQDKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMSEDKPQDYKKRLS 538
Query: 587 SGCLPSVAELLEIGSEEDQEHAVAILLCLCSQRDQ 621
S L E A L
Sbjct: 539 VELTSS---LFRTEPMAWNETADLGLDIGAQGEPL 570
|
| >2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780 | Back alignment and structure |
|---|
Score = 87.0 bits (215), Expect = 7e-18
Identities = 46/258 (17%), Positives = 84/258 (32%), Gaps = 27/258 (10%)
Query: 425 VEPLIRFLRDARDLHDSRAQRIGCRLL--LAFVSKNR-------SGIPYLNEDLFSLLAS 475
+ L+ L L L + G+ + L
Sbjct: 236 IPALVNMLGS----PVDSVLFHAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVK 291
Query: 476 FLHSAAATEETLAILVALSSYAYFISKIVASGALASILNMLDSPN-GKFQELAIKILHNL 534
FL L IL + + I+ASG +++N++ + K ++L L
Sbjct: 292 FLAITTDC---LQILAYGNQES--KLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVL 346
Query: 535 SSDVDIQSHIAPSEFLPKLVPFLKDATLAV--SCLVILKNMCNTEHARVCVVETSGCLPS 592
S + I + + L L D + + +CL L+N+ + + G L +
Sbjct: 347 SVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQE---GMEGLLGT 403
Query: 593 VAELLEIGSEEDQEHAVAILLCLCSQRDQYCKLVMNEGVIPSLVKISVYGNDKAKV---S 649
+ +LL A IL L + +V G I +LV+ + D+ + +
Sbjct: 404 LVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPA 463
Query: 650 ALELRRLLRDVAYSVEQQ 667
LR L + Q
Sbjct: 464 ICALRHLTSRHQDAEMAQ 481
|
| >2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780 | Back alignment and structure |
|---|
Score = 84.3 bits (208), Expect = 5e-17
Identities = 45/247 (18%), Positives = 81/247 (32%), Gaps = 23/247 (9%)
Query: 425 VEPLIRFLRDARDLHDSRAQRIGCRLLLAFVSKNRSGIPYLNED-----LFSLLASFLHS 479
+ L+ +R + +L +S S P + E L L S
Sbjct: 320 PQALVNIMRT----YTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTD--PS 373
Query: 480 AAATEETLAILVALSSYAYFISKIVASGALASILNMLDSPNGKFQELAIKILHNLSS-DV 538
+ L L LS A + G L +++ +L S + A IL NL+ +
Sbjct: 374 QRLVQNCLWTLRNLSDAA--TKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNY 431
Query: 539 DIQSHIAPSEFLPKLVPFLKDAT----LAVSCLVILKNMC----NTEHARVCVVETSGCL 590
+ + + LV + A + + L+++ + E A+ V L
Sbjct: 432 KNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQDAEMAQNAVRL-HYGL 490
Query: 591 PSVAELLEIGSEEDQEHAVAILLCLCSQRDQYCKLVMNEGVIPSLVKISVYGNDKAKVSA 650
P V +LL S A L+ + + +G IP LV++ V + +
Sbjct: 491 PVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRT 550
Query: 651 LELRRLL 657
Sbjct: 551 SMGGTQQ 557
|
| >2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780 | Back alignment and structure |
|---|
Score = 82.4 bits (203), Expect = 2e-16
Identities = 36/218 (16%), Positives = 78/218 (35%), Gaps = 9/218 (4%)
Query: 438 LHDSRAQRIGCRLLLAFVSKNRSGIPYLNEDLFSLLASFLHSAAATEETLAILVALSSYA 497
+RAQR+ R + + + + + + A ++ +V L +Y
Sbjct: 85 YAMTRAQRV--RAAMFPETLDEGMQIPSTQFDSAHPTNVQRLAEPSQMLKHAVVNLINYQ 142
Query: 498 YFISKIVASGALASILNMLDSPNGKFQELAIKILHNLSSDVDIQSHIAPSE-FLPKLVPF 556
+A+ A+ + +L+ + A ++H LS + I S + +V
Sbjct: 143 --DDAELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRT 200
Query: 557 LK---DATLAVSCLVILKNMCNTEHARVCVVETSGCLPSVAELLEIGSEEDQEHAVAILL 613
++ D A L N+ + + + + SG +P++ +L + HA+ L
Sbjct: 201 MQNTNDVETARCTSGTLHNLSHHREGLLAIFK-SGGIPALVNMLGSPVDSVLFHAITTLH 259
Query: 614 CLCSQRDQYCKLVMNEGVIPSLVKISVYGNDKAKVSAL 651
L ++ V G + +V + N K
Sbjct: 260 NLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITT 297
|
| >2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780 | Back alignment and structure |
|---|
Score = 77.8 bits (191), Expect = 6e-15
Identities = 42/290 (14%), Positives = 89/290 (30%), Gaps = 34/290 (11%)
Query: 425 VEPLIRFLRDARDLHDSRAQRIGCRLLLAFVSKNRSGIPYLN----EDLFSLLASFLHSA 480
+E L+R + A D L S+++ N ++ LH
Sbjct: 443 IEALVRTVLRAGD--REDITEPAICALRHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPP 500
Query: 481 ---AATEETLAILVALSSYAYFISKIVASGALASILNMLDSPNGKFQ------------- 524
+ T+ ++ L+ + + GA+ ++ +L + Q
Sbjct: 501 SHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFV 560
Query: 525 ---------ELAIKILHNLSSDVDIQSHIAPSEFLPKLVPFLKDATLAV--SCLVILKNM 573
E LH L+ D+ + I +P V L + +L +
Sbjct: 561 EGVRMEEIVEACTGALHILARDIHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCEL 620
Query: 574 CNTEHARVCVVETSGCLPSVAELLEIGSEEDQEHAVAILLCLCSQRDQYCKLVMNEGVIP 633
+ A + G + ELL +E +A A+L + + Q K ++ +
Sbjct: 621 AQDKEAAEAIEA-EGATAPLTELLHSRNEGVATYAAAVLFRMSEDKPQDYKKRLSVELTS 679
Query: 634 SLVKISVYGNDKAKVSALELRRLLRDVAYSVEQQCFGSEIDTSKDASSDP 683
SL + ++ L++ + Y + + S +
Sbjct: 680 SLFRTEPMTWNETGDLGLDIGAQGEPLGYRQDDPSYRSFHSGGYGQDAMG 729
|
| >2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780 | Back alignment and structure |
|---|
Score = 62.4 bits (151), Expect = 4e-10
Identities = 27/175 (15%), Positives = 60/175 (34%), Gaps = 9/175 (5%)
Query: 488 AILVALSSYAYFISKIVASGALASILNMLDSPNGKFQELAIKILHNLSSDVDIQSHIAPS 547
A+ I A + + L P+ + + L N D ++ +
Sbjct: 96 AMFPETLDEGMQIPSTQFDSAHPTNVQRLAEPSQMLKHAVVN-LINYQDDAELATRA--- 151
Query: 548 EFLPKLVPFLK--DATLAVSCLVILKNMCNTEHARVCVVETSGCLPSVAELLEIGSEEDQ 605
+P+L L D + V++ + E +R ++ + + ++ ++ ++ +
Sbjct: 152 --IPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVET 209
Query: 606 EHAVAILLCLCSQRDQYCKLVMNEGVIPSLVKISVYGNDKAKVSALE-LRRLLRD 659
+ L S + + G IP+LV + D A+ L LL
Sbjct: 210 ARCTSGTLHNLSHHREGLLAIFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLH 264
|
| >3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A Length = 968 | Back alignment and structure |
|---|
Score = 83.7 bits (206), Expect = 1e-16
Identities = 27/168 (16%), Positives = 64/168 (38%), Gaps = 3/168 (1%)
Query: 169 ASRLCITSPKAILIEKRSIKKLLDKVGDSDQSKIKVLKYLFYLLKKYGNSVLGEQKDNAC 228
L + P++ + + K L V + + + + + + + ++ D
Sbjct: 791 CGELKVKDPQSYSFNPKDLLKALTTVYINLSEQSEFISAVAKDERSFNRNLFVRAVDILG 850
Query: 229 AQEE-GSYTVCSQSFEVDSRVGDRKFGAQTNNLSRAIIPEVFKCPLSLRLMYDPVVIE-S 286
+ S + ++ +++ + +L +P+ F PL +M DPV++ S
Sbjct: 851 RKTGLASPEFIEKLLNFANKAEEQRKADEEEDLEYGDVPDEFLDPLMYTIMKDPVILPAS 910
Query: 287 GQTFERMWIQKWFEEGNHTCPKTKMKLVCQSLTPNTAMKDLISKWCMN 334
+R I+ + T P +M L + +TPN ++ I +
Sbjct: 911 KMNIDRSTIKAHLL-SDSTDPFNRMPLKLEDVTPNEELRQKILCFKKQ 957
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 Length = 281 | Back alignment and structure |
|---|
Score = 77.7 bits (191), Expect = 7e-16
Identities = 24/85 (28%), Positives = 39/85 (45%)
Query: 250 DRKFGAQTNNLSRAIIPEVFKCPLSLRLMYDPVVIESGQTFERMWIQKWFEEGNHTCPKT 309
D F + IP+ +S LM +P + SG T++R I++ + H P T
Sbjct: 190 DELFSQVDEKRKKRDIPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFNPVT 249
Query: 310 KMKLVCQSLTPNTAMKDLISKWCMN 334
+ L + L PN AMK++I +
Sbjct: 250 RSPLTQEQLIPNLAMKEVIDAFISE 274
|
| >4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210 | Back alignment and structure |
|---|
Score = 75.4 bits (186), Expect = 1e-15
Identities = 42/201 (20%), Positives = 87/201 (43%), Gaps = 12/201 (5%)
Query: 458 NRSGIPYLNEDLFSLLASFLHSAAATEETLAILVALSSY-AYFISKIVASGALASILNML 516
+ S +P + + L S + L L ++S I ++ +GAL +++ +L
Sbjct: 10 HGSELPQMVQQLNS------PDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLL 63
Query: 517 DSPNGKFQELAIKILHNLSSDVDIQSH-IAPSEFLPKLVPFLKDATLAV---SCLVILKN 572
SPN + + A+ L N++S + Q + + LP LV L + + +
Sbjct: 64 SSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNI 123
Query: 573 MCNTEHARVCVVETSGCLPSVAELLEIGSEEDQEHAVAILLCLCSQRDQYCKLVMNEGVI 632
V++ +G LP++ +LL +E+ + A+ L + S ++ + V G +
Sbjct: 124 ASGGNEQIQAVID-AGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGAL 182
Query: 633 PSLVKISVYGNDKAKVSALEL 653
L ++ + N+K + A E
Sbjct: 183 EKLEQLQSHENEKIQKEAQEA 203
|
| >4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210 | Back alignment and structure |
|---|
Score = 66.9 bits (164), Expect = 1e-12
Identities = 36/165 (21%), Positives = 75/165 (45%), Gaps = 8/165 (4%)
Query: 501 SKIVASGALASILNMLDSPNGKFQELAIKILHNLSSDVD--IQSHIAPSEFLPKLVPFLK 558
L ++ L+SP+ + + A++ L ++S + IQ+ + + LP LV L
Sbjct: 6 HHHHHGSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQA-VIDAGALPALVQLLS 64
Query: 559 DATLAVSC--LVILKNM-CNTEHARVCVVETSGCLPSVAELLEIGSEEDQEHAVAILLCL 615
+ L L N+ V++ +G LP++ +LL +E+ + A+ L +
Sbjct: 65 SPNEQILQEALWALSNIASGGNEQIQAVID-AGALPALVQLLSSPNEQILQEALWALSNI 123
Query: 616 CSQRDQYCKLVMNEGVIPSLVKISVYGNDKAKVSALE-LRRLLRD 659
S ++ + V++ G +P+LV++ N++ AL L +
Sbjct: 124 ASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASG 168
|
| >4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210 | Back alignment and structure |
|---|
Score = 61.5 bits (150), Expect = 6e-11
Identities = 43/209 (20%), Positives = 84/209 (40%), Gaps = 27/209 (12%)
Query: 425 VEPLIRFLRDARDLHDSRAQRIGCRLLLAFVSKNRS---------GIPYLNEDLFSLLAS 475
+ +++ L D + + R L S +P L + LL+S
Sbjct: 14 LPQMVQQLNS----PDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQ----LLSS 65
Query: 476 F---LHSAAATEETLAILVALSSYAYFISKIVASGALASILNMLDSPNGKFQELAIKILH 532
+ A L+ + + + I ++ +GAL +++ +L SPN + + A+ L
Sbjct: 66 PNEQILQEALW--ALSNIASGGNEQ--IQAVIDAGALPALVQLLSSPNEQILQEALWALS 121
Query: 533 NLSSDVDIQ-SHIAPSEFLPKLVPFLKDATLAV--SCLVILKNMCNTEHARVCVVETSGC 589
N++S + Q + + LP LV L + L L N+ + + + V+ +G
Sbjct: 122 NIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGA 181
Query: 590 LPSVAELLEIGSEEDQEHAVAILLCLCSQ 618
L + +L +E+ Q+ A L L S
Sbjct: 182 LEKLEQLQSHENEKIQKEAQEALEKLQSH 210
|
| >4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252 | Back alignment and structure |
|---|
Score = 75.8 bits (187), Expect = 2e-15
Identities = 51/249 (20%), Positives = 101/249 (40%), Gaps = 23/249 (9%)
Query: 416 SHSLSSTNFVEPLIRFLRDARDLHDSRAQRIGCRLLLAFVSKNRSGIPYL-NEDLFSLLA 474
H + + + + L D + Q R +S I + + L
Sbjct: 5 HHHHHHGSELPQMTQQLNS----DDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALV 60
Query: 475 SFLHSAAAT--EETLAILVALSSY-AYFISKIVASGALASILNMLDSPNGKFQELAIKIL 531
L S +E L L ++S I ++ +GAL +++ +L SPN + + A+ L
Sbjct: 61 QLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWAL 120
Query: 532 HNLSSDVDIQ-SHIAPSEFLPKLVPFL--------KDATLAVSCLVILKNMCNTEHARVC 582
N++S + Q + + LP LV L ++A A+S +
Sbjct: 121 SNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIAS-----GGNEQIQA 175
Query: 583 VVETSGCLPSVAELLEIGSEEDQEHAVAILLCLCSQRDQYCKLVMNEGVIPSLVKISVYG 642
V++ +G LP++ +LL +E+ + A+ L + S ++ + V G + L ++ +
Sbjct: 176 VID-AGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHE 234
Query: 643 NDKAKVSAL 651
N+K + A
Sbjct: 235 NEKIQKEAQ 243
|
| >4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252 | Back alignment and structure |
|---|
Score = 73.1 bits (180), Expect = 2e-14
Identities = 47/203 (23%), Positives = 90/203 (44%), Gaps = 11/203 (5%)
Query: 462 IPYLNEDLFSLLASFLHSAAATEETLAILVALSSYAYFISKIVASGALASILNMLDSPNG 521
+P + + L S SA LS I ++ +GAL +++ +L SPN
Sbjct: 14 LPQMTQQLNSDDMQEQLSAT-----RKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNE 68
Query: 522 KFQELAIKILHNLSSDVDIQSH-IAPSEFLPKLVPFLKDATLAV--SCLVILKNMC-NTE 577
+ + A+ L N++S + Q + + LP LV L + L L N+
Sbjct: 69 QILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGN 128
Query: 578 HARVCVVETSGCLPSVAELLEIGSEEDQEHAVAILLCLCSQRDQYCKLVMNEGVIPSLVK 637
V++ +G LP++ +LL +E+ + A+ L + S ++ + V++ G +P+LV+
Sbjct: 129 EQIQAVID-AGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQ 187
Query: 638 ISVYGNDKAKVSALE-LRRLLRD 659
+ N++ AL L +
Sbjct: 188 LLSSPNEQILQEALWALSNIASG 210
|
| >4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252 | Back alignment and structure |
|---|
Score = 68.5 bits (168), Expect = 6e-13
Identities = 43/207 (20%), Positives = 84/207 (40%), Gaps = 23/207 (11%)
Query: 425 VEPLIRFLRDARDLHDSRAQRIGCRLLLAFVSKNRS---------GIPYLNEDLFSLLAS 475
+ L++ L + + + L S +P L + LL+S
Sbjct: 56 LPALVQLLSS----PNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQ----LLSS 107
Query: 476 FLHSAAATEETLAILVALSSY-AYFISKIVASGALASILNMLDSPNGKFQELAIKILHNL 534
+ +E L L ++S I ++ +GAL +++ +L SPN + + A+ L N+
Sbjct: 108 --PNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNI 165
Query: 535 SS-DVDIQSHIAPSEFLPKLVPFL--KDATLAVSCLVILKNMCNTEHARVCVVETSGCLP 591
+S + + + LP LV L + + L L N+ + + + V+ +G L
Sbjct: 166 ASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALE 225
Query: 592 SVAELLEIGSEEDQEHAVAILLCLCSQ 618
+ +L +E+ Q+ A L L S
Sbjct: 226 KLEQLQSHENEKIQKEAQEALEKLQSH 252
|
| >3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510 | Back alignment and structure |
|---|
Score = 78.5 bits (193), Expect = 2e-15
Identities = 45/277 (16%), Positives = 100/277 (36%), Gaps = 29/277 (10%)
Query: 410 EHDNQVSHSLSSTNFVEPLIRFLRDARDLHDSRAQRIGCRLLLAFVSKNRS--------- 460
+ S+ + VE +++ + ++ +Q + +S+ +
Sbjct: 44 AMADIGSNQGTVNWSVEDIVKGINS----NNLESQLQATQAARKLLSREKQPPIDNIIRA 99
Query: 461 -GIPYLNEDLFSLLASFLHSAAATEETLAILVALSSYAYFISKIVASGALASILNMLDSP 519
IP L S + +A L + + +S +V GA+ + +++L SP
Sbjct: 100 GLIPKFVSFLGKTDCSPIQFESAW--ALTNIASGTSE--QTKAVVDGGAIPAFISLLASP 155
Query: 520 NGKFQELAIKILHNLSSDVD-IQSHIAPSEFLPKLVPFLK-----DATLAVSCLVI--LK 571
+ E A+ L N++ D + + + L+ L + L
Sbjct: 156 HAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLS 215
Query: 572 NMCNTEHARVCVVETSGCLPSVAELLEIGSEEDQEHAVAILLCLCSQRDQYCKLVMNEGV 631
N+C ++ + LP++ LL E + + L ++ ++V+ +GV
Sbjct: 216 NLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGV 275
Query: 632 IPSLVKISVYGNDKAKVSALELRRLLRDVAYSVEQQC 668
+P LVK+ AL R + ++ ++Q
Sbjct: 276 VPQLVKLLGATELPIVTPAL---RAIGNIVTGTDEQT 309
|
| >3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510 | Back alignment and structure |
|---|
Score = 70.8 bits (173), Expect = 6e-13
Identities = 35/244 (14%), Positives = 88/244 (36%), Gaps = 10/244 (4%)
Query: 425 VEPLIRFLRDARDLHDSRAQRIGCRLLLAFVSKNRSGIPYLN--EDLFSLLASFLHS--A 480
++PL+ L + L+ + +N++ P L+ E + L LH
Sbjct: 187 IDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDP 246
Query: 481 AATEETLAILVALSSY-AYFISKIVASGALASILNMLDSPNGKFQELAIKILHNLSSDVD 539
++ + L+ I +V G + ++ +L + A++ + N+ + D
Sbjct: 247 EVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTD 306
Query: 540 IQS-HIAPSEFLPKLVPFLKDATLAVSCLV--ILKNMCNTEHARVCVVETSGCLPSVAEL 596
Q+ + + L L + + + N+ ++ V G +P + +
Sbjct: 307 EQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGV 366
Query: 597 LEIGSEEDQEHAVAILLCLCS-QRDQYCKLVMNEGVIPSLVKISVYGNDKAKVSALE-LR 654
L + Q+ A + S + +++ G+I L+ + + K L+ +
Sbjct: 367 LSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAIS 426
Query: 655 RLLR 658
+ +
Sbjct: 427 NIFQ 430
|
| >3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510 | Back alignment and structure |
|---|
Score = 66.6 bits (162), Expect = 1e-11
Identities = 32/194 (16%), Positives = 63/194 (32%), Gaps = 3/194 (1%)
Query: 461 GIPYLNEDLFSLLASFLHSAAATEETLAILVALSSYAYFISKIVASGALASILNMLDSPN 520
I L L S L T + + L +++ +L +
Sbjct: 186 AIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHND 245
Query: 521 GKFQELAIKILHNLS-SDVDIQSHIAPSEFLPKLVPFLKDATLAV--SCLVILKNMCNTE 577
+ + + L+ + + +P+LV L L + L + N+
Sbjct: 246 PEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGT 305
Query: 578 HARVCVVETSGCLPSVAELLEIGSEEDQEHAVAILLCLCSQRDQYCKLVMNEGVIPSLVK 637
+ V +G L LL Q+ A + + + R + V+N G++P LV
Sbjct: 306 DEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVG 365
Query: 638 ISVYGNDKAKVSAL 651
+ + K + A
Sbjct: 366 VLSKADFKTQKEAA 379
|
| >3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354 | Back alignment and structure |
|---|
Score = 75.3 bits (185), Expect = 1e-14
Identities = 26/175 (14%), Positives = 59/175 (33%), Gaps = 17/175 (9%)
Query: 487 LAILVALSSYAYFISK--IVASGALASILNMLDSPNGKFQELAIKILHNLSSDVDIQSHI 544
L +L + +Y + + N + +P A+ +L LS D + + +
Sbjct: 10 LHLLEQIRAYCETCWEWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKLSFDEEHRHAM 69
Query: 545 APSEFLPKLVPFLKDATLAVSCLV-------------ILKNMC-NTEHARVCVVETSGCL 590
L + L+ L N+ + + GC+
Sbjct: 70 NELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCM 129
Query: 591 PSVAELLEIGSEEDQEHAVAILLCLCSQRDQYCK-LVMNEGVIPSLVKISVYGND 644
++ L+ SE+ Q+ ++L L + D K + G + +L++ ++
Sbjct: 130 RALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKK 184
|
| >3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354 | Back alignment and structure |
|---|
Score = 73.3 bits (180), Expect = 4e-14
Identities = 44/268 (16%), Positives = 91/268 (33%), Gaps = 40/268 (14%)
Query: 425 VEPLIRFLR-------DARDLHDSRAQRIGCRLLL----------AFVSKNRSGIPYLNE 467
++ + L+ D + +R L A + + + L
Sbjct: 75 LQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRAL-- 132
Query: 468 DLFSLLASFLHSAAATEETLAILVALSSYAYFISK--IVASGALASILNML-DSPNGKFQ 524
+ L S S + ++L LS A SK + G++ +++ +
Sbjct: 133 --VAQLKS--ESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTL 188
Query: 525 ELAIKILHNLSSDVD--IQSHIAPSEFLPKLVPFL------KDATLAVSCLVILKNMCNT 576
+ + L NLS+ A L LV L + S IL+N+ +
Sbjct: 189 KSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSL 248
Query: 577 ----EHARVCVVETSGCLPSVAELLEIGSEEDQEHAVAILLCLCSQRDQYCKLVMNEGVI 632
E R + E + CL ++ + L+ S +A L L ++ + + + + G +
Sbjct: 249 IATNEDHRQILRE-NNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAV 307
Query: 633 PSLVKISVYGNDKAKVSALE-LRRLLRD 659
L + + + + LR L+ +
Sbjct: 308 SMLKNLIHSKHKMIAMGSAAALRNLMAN 335
|
| >3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354 | Back alignment and structure |
|---|
Score = 58.7 bits (142), Expect = 2e-09
Identities = 38/240 (15%), Positives = 81/240 (33%), Gaps = 32/240 (13%)
Query: 419 LSSTNFVEPLIRFLRDARDLHDSRAQRIGCRLL--LAFVS--KNRS------GIPYLNED 468
S + L+ L+ Q++ +L L++ + ++ + L E
Sbjct: 123 CSMKGCMRALVAQLKS----ESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMEC 178
Query: 469 LFSLLASFLHSAAATEETLAILVALSSYAYFISKIVASGALASILNMLDSPNGKFQELAI 528
+ + + L L A + GALA ++ L + I
Sbjct: 179 ALEVKKESTLKSVLS--ALWNLSAHCT-ENKADICAVDGALAFLVGTLTYRSQTNTLAII 235
Query: 529 K----ILHNLSS----DVDIQSHIAPSEFLPKLVPFLKDATLAV--SCLVILKNMC-NTE 577
+ IL N+SS + D + + + L L+ LK +L + + L N+
Sbjct: 236 ESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNP 295
Query: 578 HARVCVVETSGCLPSVAELLEIGSEEDQEHAVAILLCLCSQRD---QYCKLVMNEGVIPS 634
+ + + G + + L+ + + A L L + R + ++ +PS
Sbjct: 296 KDQEALWD-MGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRPAKYKDANIMSPGSSLPS 354
|
| >2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450 | Back alignment and structure |
|---|
Score = 74.5 bits (183), Expect = 3e-14
Identities = 40/252 (15%), Positives = 81/252 (32%), Gaps = 15/252 (5%)
Query: 410 EHDNQVSHSLSSTNFVEPLIRFLRDARDLHDSRAQRIGCRLLLAFVSKNRSGIPYLNED- 468
E + + +S+ V + FL+ + Q +L S N + +
Sbjct: 51 EPNPPIDEVISTPGVVARFVEFLKRK---ENCTLQFESAWVLTNIASGNSLQTRIVIQAG 107
Query: 469 ----LFSLLASFLHSAAATEETLAILVALSSY-AYFISKIVASGALASILNMLDSPN-GK 522
LL+S E+ + L ++ ++ L +L + N
Sbjct: 108 AVPIFIELLSS--EFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLT 165
Query: 523 FQELAIKILHNLSSDVDIQSHIAP-SEFLPKLVPFLK--DATLAVSCLVILKNMCNTEHA 579
A+ L NL A S L L L D + L + + +
Sbjct: 166 MTRNAVWALSNLCRGKSPPPEFAKVSPCLNVLSWLLFVSDTDVLADACWALSYLSDGPND 225
Query: 580 RVCVVETSGCLPSVAELLEIGSEEDQEHAVAILLCLCSQRDQYCKLVMNEGVIPSLVKIS 639
++ V +G + ELL + A+ + + + D ++++N + SL+ +
Sbjct: 226 KIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLL 285
Query: 640 VYGNDKAKVSAL 651
+ K A
Sbjct: 286 SSPKESIKKEAC 297
|
| >2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450 | Back alignment and structure |
|---|
Score = 72.6 bits (178), Expect = 1e-13
Identities = 35/168 (20%), Positives = 65/168 (38%), Gaps = 8/168 (4%)
Query: 500 ISKIVASGALASILNMLDSPNGKFQELAIKILHNLSSDVD---IQSHIAPSEFLPKLVPF 556
+ + ++ M+ S + + Q A + L S I I+ + + V F
Sbjct: 13 MEMAPGGVITSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEF 72
Query: 557 LK---DATLAVSCLVILKNMCNTEHARVCVVETSGCLPSVAELLEIGSEEDQEHAVAILL 613
LK + TL +L N+ + + +V +G +P ELL E+ QE AV L
Sbjct: 73 LKRKENCTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALG 132
Query: 614 CLCSQRDQYCKLVMNEGVIPSLVKISVYGNDKA--KVSALELRRLLRD 659
+ V++ ++P L+++ N + + L L R
Sbjct: 133 NIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRG 180
|
| >2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450 | Back alignment and structure |
|---|
Score = 69.9 bits (171), Expect = 1e-12
Identities = 40/250 (16%), Positives = 79/250 (31%), Gaps = 12/250 (4%)
Query: 410 EHDNQVSHSLSSTNFVEPLIRFLRDARDLHDSRAQRIGCRLLLAFVSKN-RSGIPYLNED 468
++ + + V I L + D + Q + +A S R + L+ +
Sbjct: 94 SGNSLQTRIVIQAGAVPIFIELLSSEFE--DVQEQAVWALGNIAGDSTMCRDYV--LDCN 149
Query: 469 LFSLLASFLHSAAATEETLAILVALSSYAY----FISKIVASGALASILNMLDSPNGKFQ 524
+ L T + ALS+ S L + +L +
Sbjct: 150 ILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKVSPCLNVLSWLLFVSDTDVL 209
Query: 525 ELAIKILHNLSSDV-DIQSHIAPSEFLPKLVPFLKDATLAV--SCLVILKNMCNTEHARV 581
A L LS D + + +LV L V L + N+ + +
Sbjct: 210 ADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTGDDIQT 269
Query: 582 CVVETSGCLPSVAELLEIGSEEDQEHAVAILLCLCSQRDQYCKLVMNEGVIPSLVKISVY 641
V+ L S+ LL E ++ A + + + + V++ + P+L+ I
Sbjct: 270 QVILNCSALQSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQT 329
Query: 642 GNDKAKVSAL 651
+ + A
Sbjct: 330 AEFRTRKEAA 339
|
| >2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450 | Back alignment and structure |
|---|
Score = 69.5 bits (170), Expect = 1e-12
Identities = 41/243 (16%), Positives = 83/243 (34%), Gaps = 12/243 (4%)
Query: 425 VEPLIRFLRDARDLHDSRAQRIGCRLLLAF-VSKNRSGIPYLNEDLFSLLASFLHS--AA 481
+ PL++ L R L K+ ++L+ L
Sbjct: 151 LPPLLQLFSKQNRL---TMTRNAVWALSNLCRGKSPPPEFAKVSPCLNVLSWLLFVSDTD 207
Query: 482 ATEETLAILVALSSYAY-FISKIVASGALASILNMLDSPNGKFQELAIKILHNLSSDVDI 540
+ L LS I ++ +G ++ +L + K A++ + N+ + DI
Sbjct: 208 VLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTGDDI 267
Query: 541 QS-HIAPSEFLPKLVPFLKDATLAVSCLV--ILKNMCNTEHARVCVVETSGCLPSVAELL 597
Q+ I L L+ L ++ + N+ A++ V + P++ +L
Sbjct: 268 QTQVILNCSALQSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDANIFPALISIL 327
Query: 598 EIGSEEDQEHAVAILLCLCSQRD-QYCKLVMNEGVIPSLVKISVYGNDKAKVSALE-LRR 655
+ ++ A + S + K ++ G I L + + K AL L
Sbjct: 328 QTAEFRTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVALNGLEN 387
Query: 656 LLR 658
+LR
Sbjct: 388 ILR 390
|
| >2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450 | Back alignment and structure |
|---|
Score = 44.5 bits (105), Expect = 8e-05
Identities = 14/126 (11%), Positives = 41/126 (32%), Gaps = 5/126 (3%)
Query: 531 LHNLSSDVDIQSHIAPSEFLPKLVPFLK--DATLAVSCLVILKNMCNTEH--ARVCVVET 586
+ + ++ ++ + +S + + + E V+ T
Sbjct: 3 MGFHEAQINNMEMAPGGVITSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVIST 62
Query: 587 SGCLPSVAELLEIGSEED-QEHAVAILLCLCSQRDQYCKLVMNEGVIPSLVKISVYGNDK 645
G + E L+ Q + +L + S ++V+ G +P +++ +
Sbjct: 63 PGVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFED 122
Query: 646 AKVSAL 651
+ A+
Sbjct: 123 VQEQAV 128
|
| >1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530 | Back alignment and structure |
|---|
Score = 73.9 bits (181), Expect = 7e-14
Identities = 37/256 (14%), Positives = 89/256 (34%), Gaps = 16/256 (6%)
Query: 422 TNFVEPLIRFLRDARDLHDSRAQRIGCRLL--LAFVSKNRSGIPYLNEDLFSLLASFLHS 479
+ + + L D + Q + + + L F+
Sbjct: 86 QQELPQMTQQLNS----DDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRE 141
Query: 480 AAATEETLAILVALSSYAY----FISKIVASGALASILNMLDSPNGKFQELAIKILHNLS 535
L AL++ A +V + A+ + +L + + + +E AI L N++
Sbjct: 142 NQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVA 201
Query: 536 SD-VDIQSHIAPSEFLPKLVPFLKDATLAV--SCLVILKNMCNTEHARVCVVETSGCLPS 592
D D + ++ + ++ ++ + L N+C + + S LP+
Sbjct: 202 GDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPT 261
Query: 593 VAELLEIGSEEDQEHAVAILLCLCSQRDQYCKLVMNEGVIPSLVKISVYGNDKAKVSALE 652
+A+L+ E A + L + + V++ + LV++ + + + AL
Sbjct: 262 LAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPAL- 320
Query: 653 LRRLLRDVAYSVEQQC 668
R + ++ + Q
Sbjct: 321 --RAVGNIVTGNDLQT 334
|
| >1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530 | Back alignment and structure |
|---|
Score = 68.5 bits (167), Expect = 3e-12
Identities = 37/254 (14%), Positives = 90/254 (35%), Gaps = 15/254 (5%)
Query: 425 VEPLIRFLRDARDLHDSRAQRIGCRLLLAFVSKNRSGIPY-LNEDLFSLLASFLHSAAAT 483
+EP++ + R L + + + LA ++S
Sbjct: 217 MEPILGLFNS----NKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTE 272
Query: 484 --EETLAILVALSSYA-YFISKIVASGALASILNMLDSPNGKFQELAIKILHNLSSDVDI 540
+ + LS I ++ ++ +L + Q A++ + N+ + D+
Sbjct: 273 TLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDL 332
Query: 541 QS-HIAPSEFLPKLVPFLKDATLAVSCLV--ILKNMCNTEHARVCVVETSGCLPSVAELL 597
Q+ + + LP L L + + N+ ++ V + +P + +LL
Sbjct: 333 QTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLL 392
Query: 598 EIGSEEDQEHAVAILLCLCS---QRDQYCKLVMNEGVIPSLVKISVYGNDKAKVSALE-L 653
E+ + ++ A + S QR + ++++G I L + +++ L+ L
Sbjct: 393 EVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDAL 452
Query: 654 RRLLRDVAYSVEQQ 667
+L+ E +
Sbjct: 453 ENILKMGEADKEAR 466
|
| >1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530 | Back alignment and structure |
|---|
Score = 65.4 bits (159), Expect = 3e-11
Identities = 27/142 (19%), Positives = 53/142 (37%), Gaps = 5/142 (3%)
Query: 502 KIVASGALASILNMLDSPNGKFQELAIKILHNLSS--DVDIQSHIAPSEFLPKLVPFLK- 558
L + L+S + + Q A + S + + +P+LV F++
Sbjct: 82 YSQLQQELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRE 141
Query: 559 --DATLAVSCLVILKNMCNTEHARVCVVETSGCLPSVAELLEIGSEEDQEHAVAILLCLC 616
L + L N+ + A+ VV + +P +LL GS E +E A+ L +
Sbjct: 142 NQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVA 201
Query: 617 SQRDQYCKLVMNEGVIPSLVKI 638
Y V+ + ++ +
Sbjct: 202 GDSTDYRDYVLQCNAMEPILGL 223
|
| >1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530 | Back alignment and structure |
|---|
Score = 47.7 bits (113), Expect = 1e-05
Identities = 33/225 (14%), Positives = 72/225 (32%), Gaps = 25/225 (11%)
Query: 409 LEHDNQVSHSLSSTNFVEPLIRFLRDARDLHDSRAQRIGCRLLLAFVSKNRSGIPY-LNE 467
+ + ++ + L+ L + Q R + V+ N +N
Sbjct: 285 SDGPQEAIQAVIDVRIPKRLVELLSH----ESTLVQTPALRAVGNIVTGNDLQTQVVINA 340
Query: 468 DLFSLLASFLHSAAAT---EETLAILVALSSYAYFISKIVASGALASILNMLDSPNGKFQ 524
+ L L S E I + I ++ + + ++ +L+ K +
Sbjct: 341 GVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTK 400
Query: 525 ELAIKILHNLSS----DVDIQSHIAPSEFLPKLVPFLK--DATLAVSCLVILKNMCNTEH 578
+ A + N SS DI ++ + L L+ D + L L+N+
Sbjct: 401 KEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILKMGE 460
Query: 579 AR-----------VCVVETSGCLPSVAELLEIGSEEDQEHAVAIL 612
A +E +G + + + +++ E A I+
Sbjct: 461 ADKEARGLNINENADFIEKAGGMEKIFNCQQNENDKIYEKAYKII 505
|
| >3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458 | Back alignment and structure |
|---|
Score = 73.1 bits (179), Expect = 9e-14
Identities = 46/264 (17%), Positives = 94/264 (35%), Gaps = 32/264 (12%)
Query: 425 VEPLIRFLR-------DARDLHDSRAQRIGCRLL--LAF-VSKNRSGIPYLN---EDLFS 471
++ + L+ D + +R L L F N++ + + L +
Sbjct: 191 LQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVA 250
Query: 472 LLASFLHSAAATEETLAILVALSSYAYFISK--IVASGALASILNML-DSPNGKFQELAI 528
L S S + ++L LS A SK + G++ +++ + + +
Sbjct: 251 QLKS--ESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVL 308
Query: 529 KILHNLSSDVD--IQSHIAPSEFLPKLVPFL------KDATLAVSCLVILKNMCNT---- 576
L NLS+ A L LV L + S IL+N+ +
Sbjct: 309 SALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATN 368
Query: 577 EHARVCVVETSGCLPSVAELLEIGSEEDQEHAVAILLCLCSQRDQYCKLVMNEGVIPSLV 636
E R + E + CL ++ + L+ S +A L L ++ + + + + G + L
Sbjct: 369 EDHRQILRE-NNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLK 427
Query: 637 KISVYGNDKAKVSALE-LRRLLRD 659
+ + + + LR L+ +
Sbjct: 428 NLIHSKHKMIAMGSAAALRNLMAN 451
|
| >3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458 | Back alignment and structure |
|---|
Score = 72.7 bits (178), Expect = 1e-13
Identities = 28/175 (16%), Positives = 62/175 (35%), Gaps = 17/175 (9%)
Query: 487 LAILVALSSYAYFISK--IVASGALASILNMLDSPNGKFQELAIKILHNLSSDVDIQSHI 544
L +L + +Y + + N + +P A+ +L LS D + + +
Sbjct: 126 LHLLEQIRAYCETCWEWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKLSFDEEHRHAM 185
Query: 545 APSEFLPKLVPFLK-------------DATLAVSCLVILKNMC-NTEHARVCVVETSGCL 590
L + L+ TL + L N+ + + GC+
Sbjct: 186 NELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCM 245
Query: 591 PSVAELLEIGSEEDQEHAVAILLCLCSQRDQYCKL-VMNEGVIPSLVKISVYGND 644
++ L+ SE+ Q+ ++L L + D K + G + +L++ ++
Sbjct: 246 RALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKK 300
|
| >3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458 | Back alignment and structure |
|---|
Score = 58.0 bits (140), Expect = 5e-09
Identities = 45/274 (16%), Positives = 95/274 (34%), Gaps = 31/274 (11%)
Query: 417 HSLSSTNFVEPLIRFLRDARDLHDSRAQRIGCRLLLAFVSKNRSGIPYLNEDLFSLLASF 476
H++ + + R R+ R LH R C + + G+ + + +
Sbjct: 107 HNIIHSQPDDKRGR--REIRVLHLLEQIRAYCETCWEWQEAHEPGMDQDKNPMPAPVEHQ 164
Query: 477 LHSAAATEETLAILVALSSYAYFISKIVASGALASILNML-----------DSPNGKFQE 525
+ A L+ LS + G L +I +L D + +
Sbjct: 165 ICPAVCV------LMKLSFDEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRR 218
Query: 526 LAIKILHNLS-SDVDIQSHIAPSE-FLPKLVPFLK--DATLAVSCLVILKNMC--NTEHA 579
A L NL+ DV ++ + + + LV LK L +L+N+ ++
Sbjct: 219 YAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNS 278
Query: 580 RVCVVETSGCLPSVAELLEIGSEEDQEHAVAILLCLCSQRDQYC-KLVMNEGVIPSLVKI 638
+ + E + LE+ E + ++ L L + + + +G + LV
Sbjct: 279 KKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGT 338
Query: 639 SVYGNDKAKVSALE-----LRRLLRDVAYSVEQQ 667
Y + ++ +E LR + +A + + +
Sbjct: 339 LTYRSQTNTLAIIESGGGILRNVSSLIATNEDHR 372
|
| >3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458 | Back alignment and structure |
|---|
Score = 56.1 bits (135), Expect = 2e-08
Identities = 38/221 (17%), Positives = 75/221 (33%), Gaps = 31/221 (14%)
Query: 423 NFVEPLIRFLRDARDLHDSRAQRIGCRLL--LAFVSKNRS--------GIPYLNEDLFSL 472
+ L+ L+ Q++ +L L++ + S + L E
Sbjct: 243 GCMRALVAQLKS----ESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALME----- 293
Query: 473 LASFLHSAAATEETLAILVALSSY--AYFISKIVASGALASILNMLDSPNGKFQELAIK- 529
A + + + L+ L LS++ GALA ++ L + I+
Sbjct: 294 CALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIES 353
Query: 530 ---ILHNLSS----DVDIQSHIAPSEFLPKLVPFLKDATLAV--SCLVILKNMCNTEHAR 580
IL N+SS + D + + + L L+ LK +L + + L N+
Sbjct: 354 GGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKD 413
Query: 581 VCVVETSGCLPSVAELLEIGSEEDQEHAVAILLCLCSQRDQ 621
+ G + + L+ + + A L L + R
Sbjct: 414 QEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRPA 454
|
| >2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 94 | Back alignment and structure |
|---|
Score = 65.4 bits (159), Expect = 3e-13
Identities = 16/75 (21%), Positives = 26/75 (34%), Gaps = 9/75 (12%)
Query: 269 FKCPLSLRLMYDPVVIES-GQTFERMWIQKWFEEGNH-----TCPKT---KMKLVCQSLT 319
F CP++ M PV + G T+E I + E CP+ + L
Sbjct: 8 FTCPITKEEMKKPVKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHTDIRKSDLI 67
Query: 320 PNTAMKDLISKWCMN 334
+ A++ I
Sbjct: 68 QDEALRRAIENHNKK 82
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 68.3 bits (166), Expect = 6e-12
Identities = 72/537 (13%), Positives = 161/537 (29%), Gaps = 149/537 (27%)
Query: 5 ESEIVEIWSSPTSFKVHHGMCTQLSKFVERIAKVFPEIEAA----RPRCSSGVQALCLLN 60
+ +++ F ++ V R+ ++ A RP + V L++
Sbjct: 113 IEQRDRLYNDNQVFAKYN---------VSRLQPYL-KLRQALLELRP--AKNV----LID 156
Query: 61 NAIGKAKSLL--QYCSESSKLYLAITGGVI---VSRCMRSTNMME--QSL---------S 104
+G K+ + C S K+ + + + C ++E Q L S
Sbjct: 157 GVLGSGKTWVALDVCL-SYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTS 215
Query: 105 QIESMVPVMLAVEISQ-----------------IIDDLREATFILDSSDEEAGKVLRELL 147
+ + + L + Q ++ +++ A ++ + K+L L
Sbjct: 216 RSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAK-AWNAFNLSC-KIL--LT 271
Query: 148 QEDVSAIDSLEFSEIKALQLAASRLCITSPKAILIEKRSIKKLLDKVGDSDQSKIK--VL 205
D L + + L + +T + K LL K D + VL
Sbjct: 272 TRFKQVTDFLSAATTTHISLDHHSMTLTPDEV--------KSLLLKYLDCRPQDLPREVL 323
Query: 206 KYLFYLLKKYGNSVLGEQ-KDNACAQEEGSYTVCSQSFEVDSRVGDRKFGAQTNNLSRAI 264
L S++ E +D + + C + + N L A
Sbjct: 324 TTNPRRL-----SIIAESIRDGLATWDNWKHVNCDKL--------TTIIESSLNVLEPAE 370
Query: 265 IPEVFKCPLSLRLMYDPVVIESGQTFERMWIQKWFEEGNHTCPKTKMKLVCQSLTPNTAM 324
++F L + I + +W + M +V +
Sbjct: 371 YRKMFD---RLSVFPPSAHIPT-ILLSLIWFDVIKSD--------VMVVVNKLHK----- 413
Query: 325 KDLISKWCMNLCSSMNDLHVPLDISNMSLGSL----------DTSYGSDTSSNKIADG-- 372
L+ K S+ +++ L + + +L ++ SD D
Sbjct: 414 YSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYF 473
Query: 373 -------------SNRTPLWTNVHDIDLS------RLTELNWDCQCKVIED------YET 407
R L+ V +D R W+ ++ Y+
Sbjct: 474 YSHIGHHLKNIEHPERMTLFRMVF-LDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKP 532
Query: 408 RL-EHDNQVSHSLSSTNFVEPLIRFL-RDARDLHDSRAQRIGCRLLLAFVSKNRSGI 462
+ ++D + +++ ++ FL + +L S+ + L +A ++++ I
Sbjct: 533 YICDNDPKYERLVNA------ILDFLPKIEENLICSKYTDL---LRIALMAED-EAI 579
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 65.6 bits (159), Expect = 4e-11
Identities = 69/489 (14%), Positives = 142/489 (29%), Gaps = 141/489 (28%)
Query: 136 DEEAGKV---LRELLQEDVSA-IDSLEFSEIKALQLAASRLCITSPKAILIEKRSIKKLL 191
D E G+ +++L A +D+ + +++ PK+IL K I ++
Sbjct: 8 DFETGEHQYQYKDILSVFEDAFVDNFDCKDVQ-----------DMPKSIL-SKEEIDHII 55
Query: 192 DKVGDSDQSKIKVLKYLFYLLKKYGNSVLGEQKDNACAQEEGSYTVCSQSFEVDSR---V 248
D+ LF+ L ++ + + Y + + R +
Sbjct: 56 -MSKDAVSG----TLRLFWTLLSKQEEMVQKFVEEVLRIN---YKFLMSPIKTEQRQPSM 107
Query: 249 GDRKFGAQTNNLSRAIIPEVFKCPLSLRLMYDPVVIESGQTFERMWIQKWFEEGNHT--- 305
R + Q + L +VF + Q + + +++ E
Sbjct: 108 MTRMYIEQRDRLYND--NQVFA----------KYNVSRLQPYLK--LRQALLELRPAKNV 153
Query: 306 -------CPKTKMKL-VCQSLTPNTAMKDLISKWCMNL--CSSMNDLHVPLDISNMSLGS 355
KT + L VC S M I W +NL C+S + L
Sbjct: 154 LIDGVLGSGKTWVALDVCLSYKVQCKMDFKIF-W-LNLKNCNSPETVLEML--------- 202
Query: 356 LDTSYGSDTSSNKIADGSNRTPLWTNVHDIDLSRLTELN------------W-------- 395
Y D + +D S+ L + +L RL +
Sbjct: 203 QKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAF 262
Query: 396 DCQCKVIEDYETRLEHDNQVSHSLSSTNFVEPLIRFLRDARDLHDSR---AQRIGCR--- 449
+ CK++ TR QV+ LS+ + + + + + CR
Sbjct: 263 NLSCKIL--LTTR---FKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQD 317
Query: 450 ----------LLLAFVSKN-RSGI--------------------------PYLNEDLFSL 472
L+ ++++ R G+ P +F
Sbjct: 318 LPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDR 377
Query: 473 LASFLHSAAATEETLAILVALSSYAYFISKIVASGALASILNMLDSPNGKFQELAIKILH 532
L+ F SA L+++ + +V S++ +
Sbjct: 378 LSVFPPSAHIPTILLSLIWFDVIK-SDVMVVVNKLHKYSLVE-KQPKESTIS------IP 429
Query: 533 NLSSDVDIQ 541
++ ++ ++
Sbjct: 430 SIYLELKVK 438
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 52.9 bits (126), Expect = 3e-07
Identities = 63/362 (17%), Positives = 115/362 (31%), Gaps = 110/362 (30%)
Query: 396 DCQCKVIEDYETRLEHDNQVSHSLSSTN----------------------FVEPLIR--- 430
+ CK ++D + ++ H + S + FVE ++R
Sbjct: 32 NFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINY 91
Query: 431 -FLRDA-----RDLHDSRAQRIGCRLLLAFVSKNRSGIPY----------LNEDLFSLLA 474
FL R I R L + N+ Y L + L L
Sbjct: 92 KFLMSPIKTEQRQPSMMTRMYIEQRDRLY--NDNQVFAKYNVSRLQPYLKLRQALLELRP 149
Query: 475 S---FLHSAAATEET-LAILVALSS--YAYFISKI--VASGALAS---ILNMLDSPNGKF 523
+ + + +T +A+ V LS KI + S +L ML
Sbjct: 150 AKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEML------- 202
Query: 524 QELAIKILHNLSSDVDIQSHI--APSEFLPKLVPFLKDATLAVSCLVILKNMCNTEHARV 581
Q+L +I N +S D S+I +L LK +CL++L N+ N +
Sbjct: 203 QKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPY-ENCLLVLLNVQNAKAWNA 261
Query: 582 ----C--VVETSGCLPSVAELL------EIGSEE-----DQEHAVAILL-CL-CSQRD-- 620
C ++ T V + L I + + ++LL L C +D
Sbjct: 262 FNLSCKILLTTRF--KQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLP 319
Query: 621 -QYCK---LVMNEGVIPSLVKISV--------YGNDK------AKVSAL---ELRRLLRD 659
+ + +I ++ + DK + ++ L E R++
Sbjct: 320 REVLTTNPRRL--SIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDR 377
Query: 660 VA 661
++
Sbjct: 378 LS 379
|
| >3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Length = 810 | Back alignment and structure |
|---|
Score = 66.8 bits (162), Expect = 1e-11
Identities = 40/307 (13%), Positives = 90/307 (29%), Gaps = 29/307 (9%)
Query: 368 KIADGSNRTPLWTNVHDIDLSRLTELNWDCQCKVIEDYETR---------LEHDNQVSHS 418
K+ + D +L E K +D + R L D +
Sbjct: 356 KLGSYGGQDAAIRPFGDGAALKLAEACRRFLIKPGKDKDIRRWAADGLAYLTLDAECKEK 415
Query: 419 L-SSTNFVEPLIRFLRDARDLHDSRAQRIGCRLL--LAFVSKNRSGIPYLNEDLFSLLAS 475
L + L+ R + L + + +P + E LA
Sbjct: 416 LIEDKASIHALMDLARGG----NQSCLYGVVTTFVNLCNAYEKQEMLPEMIE-----LAK 466
Query: 476 FLHSAAATEETLAILVALSSYAYFISKIVASGALASILNMLDSPNGKFQELAIKILHNLS 535
F E L + I+ + G ++ + + + QEL ++L+ +
Sbjct: 467 FAKQHIPEEHELD---DVDFINKRITVLANEGITTALCALAKTESHNSQELIARVLNAVC 523
Query: 536 SDVDIQSHIAPSEFLPKLVPFLKDAT-----LAVSCLVILKNMCNTEHARVCVVETSGCL 590
+++ + + L+ + T A L + N E +
Sbjct: 524 GLKELRGKVVQEGGVKALLRMALEGTEKGKRHATQALARIGITINPEVSFSGQRSLDVIR 583
Query: 591 PSVAELLEIGSEEDQEHAVAILLCLCSQRDQYCKLVMNEGVIPSLVKISVYGNDKAKVSA 650
P + L + + + ++ L L S + + ++ E + + + + +A
Sbjct: 584 PLLNLLQQDCTALENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLMEDHLYLTRAA 643
Query: 651 LELRRLL 657
+ L
Sbjct: 644 AQCLCNL 650
|
| >3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Length = 810 | Back alignment and structure |
|---|
Score = 57.2 bits (137), Expect = 2e-08
Identities = 37/260 (14%), Positives = 86/260 (33%), Gaps = 16/260 (6%)
Query: 403 EDYETRLEHDNQVSHSLSSTNFVEPLIRFLRDARDLHDSRAQRIGCRLLLAFVSKNRS-- 460
E ++ N+ L++ L + + H+S+ + + + R
Sbjct: 475 EHELDDVDFINKRITVLANEGITTALCALAKT--ESHNSQELIARVLNAVCGLKELRGKV 532
Query: 461 ----GIPYLNEDLFSLLASFLHSAAATEETLAILVALSSYAYFISKIVASGALASILNML 516
G+ L L L + LA + + S + + +LN+L
Sbjct: 533 VQEGGVKAL---LRMALEGTEKGKRHATQALARIGITINPEVSFSGQRSLDVIRPLLNLL 589
Query: 517 DSPNGKFQEL-AIKILHNLSSDVD-IQSHIAPSEFLPKLVPFLKDATLAV--SCLVILKN 572
+ ++ L NL+S + ++ I + + K+ +L + L + + L N
Sbjct: 590 QQDCTALENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCN 649
Query: 573 MCNTEHARVCVVETSGCLPSVAELLEIGSEEDQEHAVAILLCLCSQRDQYCKLVM-NEGV 631
+ +E + + +A L E EE L + S + C+ ++
Sbjct: 650 LVMSEDVIKMFEGNNDRVKFLALLCEDEDEETATACAGALAIITSVSVKCCEKILAIASW 709
Query: 632 IPSLVKISVYGNDKAKVSAL 651
+ L + + + +
Sbjct: 710 LDILHTLIANPSPAVQHRGI 729
|
| >1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Length = 296 | Back alignment and structure |
|---|
Score = 63.9 bits (155), Expect = 4e-11
Identities = 30/209 (14%), Positives = 69/209 (33%), Gaps = 9/209 (4%)
Query: 467 EDLFSLLASFLHSAAATEETLAILVALSSYAYFI---SKIVASGALASILN-MLDSPNGK 522
A AA +E L L+ + + + ++ L++
Sbjct: 38 SQPMPPTAGEAEQAADQQEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGAAG 97
Query: 523 FQELAIKILHNLSSDV-DIQSHIAPSEFLPKLVPFLK---DATLAVSCLVILKNMCNTEH 578
+ A +++ S +V IQ + L KL+ L T+ V L + + +
Sbjct: 98 LRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQE 157
Query: 579 ARVCVVETSGCLPSVAELLEIGSEEDQEHAVAILLCLCSQRDQYCKLVMNEGVIPSLVKI 638
A + + ++ ++ + + +L L ++ + + G++ LV +
Sbjct: 158 AGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLVAL 217
Query: 639 SVYGNDKAKVSALE-LRRLLRDVAYSVEQ 666
+ L L L+ D V +
Sbjct: 218 VRTEHSPFHEHVLGALCSLVTDFPQGVRE 246
|
| >1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Length = 296 | Back alignment and structure |
|---|
Score = 55.0 bits (132), Expect = 2e-08
Identities = 36/214 (16%), Positives = 72/214 (33%), Gaps = 11/214 (5%)
Query: 472 LLASFLHSAAAT--EETLAILVALSSY-AYFISKIVASGALASILNMLDS-PNGKFQELA 527
L+ +L + AA ++ S A +++ GAL +L +LD + A
Sbjct: 86 LVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKA 145
Query: 528 IKILHNLSSDVD-IQSHIAPSEFLPKLVPFLK--DATLAVSCLVILKNMCNTEHARVCVV 584
+ + L + + + L+ ++ L V +L+N+ +
Sbjct: 146 LFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTL 205
Query: 585 ETSGCLPSVAELLEIGSEEDQEHAVAILLCLCSQRDQYCKLVMNEGVIPSLVKISVYGND 644
+ G + + L+ EH + L L + + E P L + +
Sbjct: 206 CSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTD----FPQGVRECREPELGLEELLRHR 261
Query: 645 KAKVSALELRRLLRDVAYSVEQQCFGSEIDTSKD 678
+ E + + + Q CF S D S D
Sbjct: 262 CQLLQQHEEYQEELEFCEKLLQTCFSSPADDSMD 295
|
| >2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A Length = 61 | Back alignment and structure |
|---|
Score = 55.1 bits (133), Expect = 5e-10
Identities = 10/53 (18%), Positives = 24/53 (45%), Gaps = 2/53 (3%)
Query: 269 FKCPLSLRLMYDPVV-IESGQTFERMWIQKWFEEGNHTCPKTKMKLVCQSLTP 320
C +S ++ PV+ +S FE+ ++++ ++ P T L + +
Sbjct: 4 MLCAISGKVPRRPVLSPKSRTIFEKSLLEQYVKD-TGNDPITNEPLSIEEIVE 55
|
| >3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae} Length = 267 | Back alignment and structure |
|---|
Score = 59.2 bits (142), Expect = 1e-09
Identities = 29/238 (12%), Positives = 67/238 (28%), Gaps = 7/238 (2%)
Query: 101 QSLSQIESMVPVMLAVEISQIIDDLREATFILDSSDEEAGKVLRELLQEDVSAIDSLEFS 160
+S ++ L+ Q + E L S + + E + + S L
Sbjct: 17 KSGKYFHNLHARDLSNIYQQCYKQIDETINQLVDSTSPSTIGIEEQVADITSTYKLLSTY 76
Query: 161 EIKALQLAASRLCITSPKAILIEKRSIKKLLDKVGDSDQSKIKVLKYLFYLLKKYGNSVL 220
E ++ + K + ++ D ++ L L
Sbjct: 77 ESESNSFDEHIKDL--KKNFKQSSDACPQIDLSTWDKYRTGELTAPKLSELYLNMPTPEP 134
Query: 221 GEQKDNACAQEEGSYTVCSQSFEVDSRVGDRKFGAQTNNLSRAIIPEVFKCPLSLRLMYD 280
+N + + + + D + A ++L CP++ +
Sbjct: 135 ATMVNNTDTLKILKVLPYIWN-DPTCVIPDLQNPADEDDLQIEGGKIELTCPITCKPYEA 193
Query: 281 PVVIES-GQTFERMWIQKWFEEGNH-TCPKT--KMKLVCQSLTPNTAMKDLISKWCMN 334
P++ F+R IQ + + CP+ + + + M+ M
Sbjct: 194 PLISRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVSMRDFVRDPIMELRCKIAKMK 251
|
| >3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens} Length = 124 | Back alignment and structure |
|---|
Score = 51.9 bits (124), Expect = 2e-08
Identities = 15/89 (16%), Positives = 36/89 (40%), Gaps = 1/89 (1%)
Query: 243 EVDSRVGDRKFGAQTNNLSRAIIPEVFKCPLSLRLMYDPVVIESGQTFERMWIQKWFEEG 302
EV + + DR L + + E F+C L++ P+ + + + F
Sbjct: 27 EVLASLKDRPASGSPFQLFLSKVEETFQCICCQELVFRPITTVCQHNVCKDCLDRSFRAQ 86
Query: 303 NHTCPKTKMKLVCQ-SLTPNTAMKDLISK 330
+CP + L ++ N ++ ++++
Sbjct: 87 VFSCPACRYDLGRSYAMQVNQPLQTVLNQ 115
|
| >1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457 | Back alignment and structure |
|---|
Score = 53.7 bits (128), Expect = 1e-07
Identities = 23/133 (17%), Positives = 47/133 (35%), Gaps = 6/133 (4%)
Query: 509 LASILNMLDSPNGKFQELAIKILHNLSS-DVDIQSHIAPSEFLPKLVPFLKDATLAVSCL 567
+ + L S + K+Q + + + D + + + KLV L+ V
Sbjct: 4 IPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQA 63
Query: 568 VI--LKNM-CNTEHARVCVVETSGCLPSVAELLEIGSEEDQEHAVAILLCLCSQRDQYCK 624
L+N+ + ++ +G +V+ L G+ E Q+ +L L K
Sbjct: 64 AAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLS--STDELK 121
Query: 625 LVMNEGVIPSLVK 637
+ +P L
Sbjct: 122 EELIADALPVLAD 134
|
| >1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457 | Back alignment and structure |
|---|
Score = 52.9 bits (126), Expect = 2e-07
Identities = 26/153 (16%), Positives = 49/153 (32%), Gaps = 10/153 (6%)
Query: 477 LHSAAATEETLAILVALSSYAYFISKIVASGALASILNMLDSPNGKFQELAIKILHNLSS 536
L + A + L L S + L I +L S N +L N+S
Sbjct: 301 LEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSR 360
Query: 537 DVDIQSHIAPSEFLPKLVPFLKDATL--------AVSCLVILKNMCNTEHARVCVVETSG 588
+ + P++ L T S ++N+ ++ +S
Sbjct: 361 HPLLHRVMGNQ-VFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSS 419
Query: 589 CLPSVAELLE-IGSEEDQEHAVAILLCLCSQRD 620
L ++ L S + E A +L + S ++
Sbjct: 420 MLNNIINLCRSSASPKAAEAARLLLSDMWSSKE 452
|
| >1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457 | Back alignment and structure |
|---|
Score = 52.5 bits (125), Expect = 3e-07
Identities = 29/176 (16%), Positives = 62/176 (35%), Gaps = 22/176 (12%)
Query: 502 KIVASGALASILNMLDSPNGKFQELAIKILHNLSS-DVDIQSHIAPSEFLPKLVPFLK-- 558
++ G + ++++L SPN Q+ A L NL + + + V L+
Sbjct: 39 QVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRT 98
Query: 559 -DATLAVSCLVILKNMCNTEHARVCVVETSGCLPSVAELL----------------EIGS 601
+A + +L N+ +T+ + ++ LP +A+ + E+
Sbjct: 99 GNAEIQKQLTGLLWNLSSTDELKEELIA--DALPVLADRVIIPFSGWCDGNSNMSREVVD 156
Query: 602 EEDQEHAVAILLCLCSQRDQYCKLVMNEGVIPSLVKISVYGNDKAKVSALELRRLL 657
E +A L L S + G+I SL+ ++ + +
Sbjct: 157 PEVFFNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCM 212
|
| >1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457 | Back alignment and structure |
|---|
Score = 48.3 bits (114), Expect = 7e-06
Identities = 18/92 (19%), Positives = 34/92 (36%), Gaps = 4/92 (4%)
Query: 550 LPKLVPFLK--DATLAVSCLVILKNMC-NTEHARVCVVETSGCLPSVAELLEIGSEEDQE 606
+PK V +L D +++ C E A+ V + G + + +LL ++ Q+
Sbjct: 4 IPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQ-LGGICKLVDLLRSPNQNVQQ 62
Query: 607 HAVAILLCLCSQRDQYCKLVMNEGVIPSLVKI 638
A L L + + I V +
Sbjct: 63 AAAGALRNLVFRSTTNKLETRRQNGIREAVSL 94
|
| >3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Length = 584 | Back alignment and structure |
|---|
Score = 53.4 bits (127), Expect = 2e-07
Identities = 19/161 (11%), Positives = 50/161 (31%), Gaps = 8/161 (4%)
Query: 500 ISKIVASGALASILNMLDSPNGKFQELAIKILHNLSS-DVDIQSHIAPSEFLPKLVPFLK 558
L ++ ML + A L +L + +++ + + +P LV L
Sbjct: 41 PPPNWRQPELPEVIAMLGFRLDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLD 100
Query: 559 DATL-----AVSCLVILKNMCNTEHARVCVVETSGCLPSVAELLEIGSEEDQEHAVAILL 613
A L + + ++ +P++ LL + D + L
Sbjct: 101 HPKKEVHLGACGALKNISFGRDQDNKIAIK--NCDGVPALVRLLRKARDMDLTEVITGTL 158
Query: 614 CLCSQRDQYCKLVMNEGVIPSLVKISVYGNDKAKVSALELR 654
S D +++ + ++ + + + + +
Sbjct: 159 WNLSSHDSIKMEIVDHALHALTDEVIIPHSGWEREPNEDCK 199
|
| >3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Length = 584 | Back alignment and structure |
|---|
Score = 46.9 bits (110), Expect = 2e-05
Identities = 35/202 (17%), Positives = 73/202 (36%), Gaps = 31/202 (15%)
Query: 461 GIPYLNEDLFSLLASFLHSAAATEETLAILVALSSYAYFISKIVASGALASILNMLDSPN 520
+P + L L + +AAA + L + + + ++ +LD P
Sbjct: 49 ELPEVIAMLGFRLDAVKSNAAAYLQHLC-----YRNDKVKTDVRKLKGIPVLVGLLDHPK 103
Query: 521 GKFQELAIKILHNLSSDVDIQSHIAPSEF--LPKLVPFLK---DATLAVSCLVILKNMCN 575
+ A L N+S D + IA +P LV L+ D L L N+ +
Sbjct: 104 KEVHLGACGALKNISFGRDQDNKIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSS 163
Query: 576 TEHARVCVVETSGCLPSVAELL------------------EIGSEEDQEHAVAILLCLCS 617
+ ++ +V+ L ++ + + I E + L + S
Sbjct: 164 HDSIKMEIVD--HALHALTDEVIIPHSGWEREPNEDCKPRHIEWESVLTNTAGCLRNVSS 221
Query: 618 QRDQYCKLVMN-EGVIPSLVKI 638
+R + + + +G++ +L+ I
Sbjct: 222 ERSEARRKLRECDGLVDALIFI 243
|
| >3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Length = 584 | Back alignment and structure |
|---|
Score = 46.9 bits (110), Expect = 2e-05
Identities = 26/142 (18%), Positives = 54/142 (38%), Gaps = 6/142 (4%)
Query: 507 GALASILNMLDSPNGKFQELAIKILHNLSSDVDIQSHIAPSEFLPKLVPFLK--DATLAV 564
G +P + + ++ L +L + E LP+++ L +
Sbjct: 8 GEEVPSDQYYWAPLAQHERGSLASLDSLRKGGPPPPNWRQPE-LPEVIAMLGFRLDAVKS 66
Query: 565 SCLVILKNMC-NTEHARVCVVETSGCLPSVAELLEIGSEEDQEHAVAILLCLCSQRDQYC 623
+ L+++C + + V + +P + LL+ +E A L + RDQ
Sbjct: 67 NAAAYLQHLCYRNDKVKTDVRK-LKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQDN 125
Query: 624 K-LVMNEGVIPSLVKISVYGND 644
K + N +P+LV++ D
Sbjct: 126 KIAIKNCDGVPALVRLLRKARD 147
|
| >3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Length = 584 | Back alignment and structure |
|---|
Score = 45.3 bits (106), Expect = 6e-05
Identities = 21/111 (18%), Positives = 40/111 (36%), Gaps = 7/111 (6%)
Query: 545 APSEFLPKLVPFLKDATLAVSC-----LVILKNMCNTEHARVCVVETSGCLPSVAELLEI 599
+P + + VP + ++ L L ++ + LP V +L
Sbjct: 2 SPEFMIGEEVPSDQYYWAPLAQHERGSLASLDSLRKGGPPPPNWRQ--PELPEVIAMLGF 59
Query: 600 GSEEDQEHAVAILLCLCSQRDQYCKLVMNEGVIPSLVKISVYGNDKAKVSA 650
+ + +A A L LC + D+ V IP LV + + + + A
Sbjct: 60 RLDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGA 110
|
| >3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Length = 584 | Back alignment and structure |
|---|
Score = 43.0 bits (100), Expect = 3e-04
Identities = 28/221 (12%), Positives = 59/221 (26%), Gaps = 26/221 (11%)
Query: 451 LLAFVSKNRSGIPYLNEDLFSLLASFLHSAAATEETLAILVALSSYAYFISKIVASGALA 510
L V SG + S V+ G +
Sbjct: 179 LTDEVIIPHSGWEREPNEDCKPRHIEWESVLTNTAGCLRNVSSERSEARRKLRECDGLVD 238
Query: 511 SILNMLDS------PNGKFQELAIKILHNLSSDVDIQSHIAPSEFLPKLVPFLKDATLAV 564
+++ ++ + + K E + +L NLS V + A
Sbjct: 239 ALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQEA------------- 285
Query: 565 SCLVILKNMCNTEHARVCVVETSGCLPSVAELLEIGSEED-QEHAVAILLCLCSQR---- 619
+ N + ++ + LL+ E + + LC+ R
Sbjct: 286 -APNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYG 344
Query: 620 DQYCKLVMNEGVIPSLVKISVYGNDKAKVSALE-LRRLLRD 659
+ E + ++ + +++ +A LR L D
Sbjct: 345 RYIRSALRQEKALSAIADLLTNEHERVVKAASGALRNLAVD 385
|
| >2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B Length = 165 | Back alignment and structure |
|---|
Score = 47.7 bits (113), Expect = 1e-06
Identities = 21/72 (29%), Positives = 30/72 (41%), Gaps = 2/72 (2%)
Query: 261 SRAIIPEVFKCPLSLRLMYDPVVI-ESGQTFERMWIQKWFEEGNHTCPKTKMKLV-CQSL 318
S + CP+ L ++ + + E F I GN CP + KLV +SL
Sbjct: 47 SPRSLHSELMCPICLDMLKNTMTTKECLHRFCADCIITALRSGNKECPTCRKKLVSKRSL 106
Query: 319 TPNTAMKDLISK 330
P+ LISK
Sbjct: 107 RPDPNFDALISK 118
|
| >3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} Length = 233 | Back alignment and structure |
|---|
Score = 46.5 bits (110), Expect = 1e-05
Identities = 27/170 (15%), Positives = 55/170 (32%), Gaps = 23/170 (13%)
Query: 502 KIVASGALASILNMLDSPNGKFQELAIKILHNLSS-DVDIQSHIAPSEFLPKLVPFLK-- 558
++ + +L +L N Q L NL D D + +A +P+L+ LK
Sbjct: 47 RVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDNKLEVAELNGVPRLLQVLKQT 106
Query: 559 -DATLAVSCLVILKNMCNTEHARVCVVETSGCLPSVAELL----------------EIGS 601
D +L N+ + + + ++ L ++ E + +
Sbjct: 107 RDLETKKQITGLLWNLSSNDKLKNLMIT--EALLTLTENIIIPFSGWPEGDYPKANGLLD 164
Query: 602 EEDQEHAVAILLCLCSQRDQYCKLVMN-EGVIPSLVKISVYGNDKAKVSA 650
+ + L + S K + +G+I SLV +
Sbjct: 165 FDIFYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDD 214
|
| >3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} Length = 233 | Back alignment and structure |
|---|
Score = 44.2 bits (104), Expect = 5e-05
Identities = 15/101 (14%), Positives = 36/101 (35%), Gaps = 4/101 (3%)
Query: 550 LPKLVPFLK----DATLAVSCLVILKNMCNTEHARVCVVETSGCLPSVAELLEIGSEEDQ 605
L + V L+ + + +++ C + V + + +LL++ +E+ Q
Sbjct: 10 LERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQ 69
Query: 606 EHAVAILLCLCSQRDQYCKLVMNEGVIPSLVKISVYGNDKA 646
L L + + V +P L+++ D
Sbjct: 70 RAVCGALRNLVFEDNDNKLEVAELNGVPRLLQVLKQTRDLE 110
|
| >1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens} Length = 150 | Back alignment and structure |
|---|
Score = 44.6 bits (105), Expect = 2e-05
Identities = 15/65 (23%), Positives = 27/65 (41%), Gaps = 1/65 (1%)
Query: 267 EVFKCPLSLRLMYDPVVIESGQTFERMWIQKWFEEGNHTCPKTKMKLV-CQSLTPNTAMK 325
+ F C L+Y PV E + +Q+ F+ +CP + L + PN ++
Sbjct: 77 QSFMCVCCQELVYQPVTTECFHNVCKDCLQRSFKAQVFSCPACRHDLGQNYIMIPNEILQ 136
Query: 326 DLISK 330
L+
Sbjct: 137 TLLDL 141
|
| >3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens} Length = 92 | Back alignment and structure |
|---|
Score = 42.1 bits (99), Expect = 3e-05
Identities = 18/74 (24%), Positives = 30/74 (40%), Gaps = 3/74 (4%)
Query: 261 SRAIIPEVFKCPLSLRLMYDPVVIES-GQTFERMWIQK-WFEEGNHTCPKTKMKLVCQ-S 317
IP+ C + +M D VVI G ++ I+ E HTCP V +
Sbjct: 6 EDDPIPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSPDA 65
Query: 318 LTPNTAMKDLISKW 331
L N ++ ++ +
Sbjct: 66 LIANKFLRQAVNNF 79
|
| >3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens} Length = 100 | Back alignment and structure |
|---|
Score = 40.3 bits (94), Expect = 2e-04
Identities = 13/67 (19%), Positives = 27/67 (40%), Gaps = 1/67 (1%)
Query: 265 IPEVFKCPLSLRLMYDPVVIES-GQTFERMWIQKWFEEGNHTCPKTKMKLVCQSLTPNTA 323
I EVF+C + + + D + + I++W E CP + L + L
Sbjct: 19 IAEVFRCFICMEKLRDARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQLRELVNCRW 78
Query: 324 MKDLISK 330
+++ +
Sbjct: 79 AEEVTQQ 85
|
| >3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A Length = 118 | Back alignment and structure |
|---|
Score = 40.6 bits (95), Expect = 2e-04
Identities = 16/66 (24%), Positives = 26/66 (39%)
Query: 265 IPEVFKCPLSLRLMYDPVVIESGQTFERMWIQKWFEEGNHTCPKTKMKLVCQSLTPNTAM 324
+ ++CP+ L + + V G F + I K + H CP L+ L P+
Sbjct: 15 LESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLFPDNFA 74
Query: 325 KDLISK 330
K I
Sbjct: 75 KREILS 80
|
| >3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, chromosomal protein, DNA repair, metal-binding; 2.12A {Homo sapiens} Length = 115 | Back alignment and structure |
|---|
Score = 40.3 bits (94), Expect = 3e-04
Identities = 11/71 (15%), Positives = 25/71 (35%), Gaps = 7/71 (9%)
Query: 269 FKCPLSLRLMYDPVVIESGQTFERMWIQKWFEEGNHTCP-------KTKMKLVCQSLTPN 321
+C + + ++ +PV + T + Q E+ + CP ++ N
Sbjct: 16 CQCGICMEILVEPVTLPCNHTLCKPCFQSTVEKASLCCPFCRRRVSSWTRYHTRRNSLVN 75
Query: 322 TAMKDLISKWC 332
+ +I K
Sbjct: 76 VELWTIIQKHY 86
|
| >2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 66 | Back alignment and structure |
|---|
Score = 38.2 bits (89), Expect = 4e-04
Identities = 7/43 (16%), Positives = 14/43 (32%)
Query: 265 IPEVFKCPLSLRLMYDPVVIESGQTFERMWIQKWFEEGNHTCP 307
+ + +KC ++ P E G F + + C
Sbjct: 12 VEDKYKCEKCHLVLCSPKQTECGHRFCESCMAALLSSSSPKCT 54
|
| >2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens} Length = 99 | Back alignment and structure |
|---|
Score = 39.0 bits (91), Expect = 4e-04
Identities = 10/68 (14%), Positives = 25/68 (36%), Gaps = 2/68 (2%)
Query: 265 IPEVFKCPLSLRLMYDPVVIES-GQTFERMWIQKWFEEGNHTCPKTKMKLVCQSLTPNTA 323
I ++ +C + ++I + + I+K+ CP + + L N
Sbjct: 19 IDDLLRCGICFEYFNIAMIIPQCSHNYCSLCIRKFLSY-KTQCPTCCVTVTEPDLKNNRI 77
Query: 324 MKDLISKW 331
+ +L+
Sbjct: 78 LDELVKSL 85
|
| >2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens} Length = 74 | Back alignment and structure |
|---|
Score = 38.2 bits (89), Expect = 5e-04
Identities = 16/56 (28%), Positives = 25/56 (44%), Gaps = 2/56 (3%)
Query: 254 GAQTNNLSRAIIPEVFKCPLSLRLMYDPVVIES-GQTFERMWIQKWFEE-GNHTCP 307
G+ ++ IP+ C + +M D VVI G ++ I+ E HTCP
Sbjct: 1 GSSGSSGEDDPIPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCP 56
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 710 | |||
| 3nmw_A | 354 | APC variant protein; ARMADIILO repeats domain, cel | 99.97 | |
| 3nmz_A | 458 | APC variant protein; protein-protein complex, arma | 99.96 | |
| 1xm9_A | 457 | Plakophilin 1; armadillo repeat, cell adhesion; 2. | 99.95 | |
| 3l6x_A | 584 | Catenin delta-1; catenin, armadillo, ARM, JMD, CE | 99.94 | |
| 1xm9_A | 457 | Plakophilin 1; armadillo repeat, cell adhesion; 2. | 99.93 | |
| 3nmz_A | 458 | APC variant protein; protein-protein complex, arma | 99.93 | |
| 3nmw_A | 354 | APC variant protein; ARMADIILO repeats domain, cel | 99.92 | |
| 3l6x_A | 584 | Catenin delta-1; catenin, armadillo, ARM, JMD, CE | 99.91 | |
| 3now_A | 810 | UNC-45 protein, SD10334P; armadillo repeat, HSP90, | 99.91 | |
| 4hxt_A | 252 | De novo protein OR329; structural genomics, PSI-bi | 99.91 | |
| 3now_A | 810 | UNC-45 protein, SD10334P; armadillo repeat, HSP90, | 99.91 | |
| 3tpo_A | 529 | Importin subunit alpha-2; nuclear import, protein | 99.91 | |
| 3ul1_B | 510 | Importin subunit alpha-2; arm repeat, armadillo re | 99.91 | |
| 3ul1_B | 510 | Importin subunit alpha-2; arm repeat, armadillo re | 99.9 | |
| 4db8_A | 252 | Armadillo-repeat protein; solenoid repeat, de novo | 99.9 | |
| 3tt9_A | 233 | Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} | 99.9 | |
| 3tpo_A | 529 | Importin subunit alpha-2; nuclear import, protein | 99.9 | |
| 4b8j_A | 528 | Importin subunit alpha-1A; transport protein, nucl | 99.89 | |
| 4db8_A | 252 | Armadillo-repeat protein; solenoid repeat, de novo | 99.88 | |
| 4b8j_A | 528 | Importin subunit alpha-1A; transport protein, nucl | 99.88 | |
| 4hxt_A | 252 | De novo protein OR329; structural genomics, PSI-bi | 99.87 | |
| 3tt9_A | 233 | Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} | 99.87 | |
| 1wa5_B | 530 | Importin alpha subunit; nuclear transport/complex, | 99.86 | |
| 1wa5_B | 530 | Importin alpha subunit; nuclear transport/complex, | 99.86 | |
| 2jdq_A | 450 | Importin alpha-1 subunit; transport, PB2 subunit, | 99.85 | |
| 2jdq_A | 450 | Importin alpha-1 subunit; transport, PB2 subunit, | 99.85 | |
| 1jdh_A | 529 | Beta-catenin; beta-catenin, protein-protein comple | 99.85 | |
| 4db6_A | 210 | Armadillo repeat protein; solenoid repeat, armadil | 99.85 | |
| 2z6h_A | 644 | Catenin beta-1, beta-catenin; C-terminal domain, a | 99.85 | |
| 2kr4_A | 85 | Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ri | 99.84 | |
| 1wgm_A | 98 | Ubiquitin conjugation factor E4A; ubiquitinating e | 99.84 | |
| 2kre_A | 100 | Ubiquitin conjugation factor E4 B; U-box domain, E | 99.84 | |
| 1jdh_A | 529 | Beta-catenin; beta-catenin, protein-protein comple | 99.83 | |
| 4db6_A | 210 | Armadillo repeat protein; solenoid repeat, armadil | 99.82 | |
| 2z6h_A | 644 | Catenin beta-1, beta-catenin; C-terminal domain, a | 99.82 | |
| 2f42_A | 179 | STIP1 homology and U-box containing protein 1; cha | 99.81 | |
| 2z6g_A | 780 | B-catenin; FULL-length, beta-catenin, cell adhesio | 99.81 | |
| 2z6g_A | 780 | B-catenin; FULL-length, beta-catenin, cell adhesio | 99.8 | |
| 3opb_A | 778 | SWI5-dependent HO expression protein 4; heat and a | 99.77 | |
| 1t1h_A | 78 | Gspef-atpub14, armadillo repeat containing protein | 99.76 | |
| 1xqr_A | 296 | HSPBP1 protein; armadillo repeat, superhelical twi | 99.75 | |
| 3opb_A | 778 | SWI5-dependent HO expression protein 4; heat and a | 99.74 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 99.74 | |
| 2yu4_A | 94 | E3 SUMO-protein ligase NSE2; SP-ring domain, struc | 99.73 | |
| 1xqr_A | 296 | HSPBP1 protein; armadillo repeat, superhelical twi | 99.71 | |
| 3m62_A | 968 | Ubiquitin conjugation factor E4; armadillo-like re | 99.63 | |
| 2bay_A | 61 | PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin l | 99.6 | |
| 3ztg_A | 92 | E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mR | 99.55 | |
| 3htk_C | 267 | E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL- | 99.53 | |
| 3fl2_A | 124 | E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA | 99.43 | |
| 1z6u_A | 150 | NP95-like ring finger protein isoform B; structura | 99.39 | |
| 2y43_A | 99 | E3 ubiquitin-protein ligase RAD18; DNA repair, met | 99.3 | |
| 3grl_A | 651 | General vesicular transport factor P115; vesicle t | 99.28 | |
| 2ckl_A | 108 | Polycomb group ring finger protein 4; BMI1, RING1B | 99.26 | |
| 2egp_A | 79 | Tripartite motif-containing protein 34; ZF-C3HC4 d | 99.26 | |
| 3l11_A | 115 | E3 ubiquitin-protein ligase RNF168; E3 ligase, rin | 99.25 | |
| 1jm7_B | 117 | BARD1, BRCA1-associated ring domain protein 1; rin | 99.25 | |
| 2ecw_A | 85 | Tripartite motif-containing protein 30; metal bind | 99.24 | |
| 3hct_A | 118 | TNF receptor-associated factor 6; cross-brace, bet | 99.24 | |
| 3lrq_A | 100 | E3 ubiquitin-protein ligase TRIM37; structural gen | 99.24 | |
| 2ckl_B | 165 | Ubiquitin ligase protein RING2; BMI1, RING1B, poly | 99.23 | |
| 2yur_A | 74 | Retinoblastoma-binding protein 6; P53-associated c | 99.22 | |
| 2ecv_A | 85 | Tripartite motif-containing protein 5; metal bindi | 99.22 | |
| 2csy_A | 81 | Zinc finger protein 183-like 1; ring finger protei | 99.2 | |
| 2ecy_A | 66 | TNF receptor-associated factor 3; metal binding pr | 99.19 | |
| 2djb_A | 72 | Polycomb group ring finger protein 6; PCGF6, ring | 99.15 | |
| 1jm7_A | 112 | BRCA1, breast cancer type 1 susceptibility protein | 99.15 | |
| 4ayc_A | 138 | E3 ubiquitin-protein ligase RNF8; DNA damage, K63 | 99.12 | |
| 3hcs_A | 170 | TNF receptor-associated factor 6; cross-brace, bet | 99.09 | |
| 3knv_A | 141 | TNF receptor-associated factor 2; cross-brace, alt | 99.08 | |
| 2ysl_A | 73 | Tripartite motif-containing protein 31; ring-type | 99.07 | |
| 1rmd_A | 116 | RAG1; V(D)J recombination, antibody, MAD, ring fin | 99.06 | |
| 1g25_A | 65 | CDK-activating kinase assembly factor MAT1; ring f | 99.05 | |
| 3grl_A | 651 | General vesicular transport factor P115; vesicle t | 99.05 | |
| 2ysj_A | 63 | Tripartite motif-containing protein 31; ring-type | 99.02 | |
| 3ltm_A | 211 | Alpha-REP4; protein engineering, heat-like repeat, | 98.96 | |
| 2ecj_A | 58 | Tripartite motif-containing protein 39; TRIM39, ri | 98.95 | |
| 3ng2_A | 71 | RNF4, snurf, ring finger protein 4; ring domain, E | 98.94 | |
| 2d8t_A | 71 | Dactylidin, ring finger protein 146; RNF146, ring | 98.92 | |
| 3ltj_A | 201 | Alpharep-4; protein engineering, heat-like repeat, | 98.9 | |
| 2ct2_A | 88 | Tripartite motif protein 32; zinc-finger protein H | 98.88 | |
| 2xeu_A | 64 | Ring finger protein 4; transcription, zinc-finger, | 98.85 | |
| 2ea6_A | 69 | Ring finger protein 4; RNF4, RES4-26, ring domain, | 98.84 | |
| 2ect_A | 78 | Ring finger protein 126; metal binding protein, st | 98.79 | |
| 1e4u_A | 78 | Transcriptional repressor NOT4; gene regulation, t | 98.75 | |
| 3ltm_A | 211 | Alpha-REP4; protein engineering, heat-like repeat, | 98.74 | |
| 4gmo_A | 684 | Putative uncharacterized protein; ARM, heat, solen | 98.72 | |
| 3ltj_A | 201 | Alpharep-4; protein engineering, heat-like repeat, | 98.72 | |
| 1oyz_A | 280 | Hypothetical protein YIBA; structural genomics, PS | 98.67 | |
| 1oyz_A | 280 | Hypothetical protein YIBA; structural genomics, PS | 98.66 | |
| 4ap4_A | 133 | E3 ubiquitin ligase RNF4; ligase-signalling protei | 98.6 | |
| 2ecn_A | 70 | Ring finger protein 141; RNF141, ring domain, zinc | 98.59 | |
| 2ecm_A | 55 | Ring finger and CHY zinc finger domain- containing | 98.59 | |
| 1chc_A | 68 | Equine herpes virus-1 ring domain; viral protein; | 98.59 | |
| 2ep4_A | 74 | Ring finger protein 24; zinc binding, ubiquitin, E | 98.56 | |
| 1bor_A | 56 | Transcription factor PML; proto-oncogene, nuclear | 98.56 | |
| 1iym_A | 55 | EL5; ring-H2 finger, ubiquitin ligase, DNA binding | 98.5 | |
| 2kiz_A | 69 | E3 ubiquitin-protein ligase arkadia; ring-H2 finge | 98.47 | |
| 2l0b_A | 91 | E3 ubiquitin-protein ligase praja-1; zinc finger, | 98.46 | |
| 1v87_A | 114 | Deltex protein 2; ring-H2 domain, zinc-binding dom | 98.44 | |
| 1x4j_A | 75 | Ring finger protein 38; structural genomics, NPPSF | 98.42 | |
| 4fdd_A | 852 | Transportin-1; heat repeats, karyopherin, nuclear | 98.38 | |
| 4ic3_A | 74 | E3 ubiquitin-protein ligase XIAP; ring domain, zin | 98.37 | |
| 2y1n_A | 389 | E3 ubiquitin-protein ligase; ligase-transferase co | 98.36 | |
| 4gmo_A | 684 | Putative uncharacterized protein; ARM, heat, solen | 98.32 | |
| 4fdd_A | 852 | Transportin-1; heat repeats, karyopherin, nuclear | 98.31 | |
| 4ap4_A | 133 | E3 ubiquitin ligase RNF4; ligase-signalling protei | 98.24 | |
| 1wim_A | 94 | KIAA0161 protein; ring finger domain, UBCM4-intera | 98.19 | |
| 2ecg_A | 75 | Baculoviral IAP repeat-containing protein 4; BIRC4 | 98.19 | |
| 1ibr_B | 462 | P95, importin beta-1 subunit, nuclear factor; smal | 98.17 | |
| 2vgl_B | 591 | AP-2 complex subunit beta-1; cytoplasmic vesicle, | 98.16 | |
| 2vgl_B | 591 | AP-2 complex subunit beta-1; cytoplasmic vesicle, | 98.04 | |
| 2ecl_A | 81 | Ring-box protein 2; RNF7, ring domian, zinc-bindin | 98.0 | |
| 1b3u_A | 588 | Protein (protein phosphatase PP2A); scaffold prote | 98.0 | |
| 1b3u_A | 588 | Protein (protein phosphatase PP2A); scaffold prote | 97.99 | |
| 2vje_A | 64 | E3 ubiquitin-protein ligase MDM2; proto-oncogene, | 97.89 | |
| 3t6p_A | 345 | Baculoviral IAP repeat-containing protein 2; ring, | 97.88 | |
| 2vje_B | 63 | MDM4 protein; proto-oncogene, phosphorylation, alt | 97.87 | |
| 3dpl_R | 106 | Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST | 97.82 | |
| 2yho_A | 79 | E3 ubiquitin-protein ligase mylip; ligase, E2 liga | 97.82 | |
| 2ea5_A | 68 | Cell growth regulator with ring finger domain prot | 97.68 | |
| 2d8s_A | 80 | Cellular modulator of immune recognition; C-MIR, m | 97.62 | |
| 1ibr_B | 462 | P95, importin beta-1 subunit, nuclear factor; smal | 97.62 | |
| 3dad_A | 339 | FH1/FH2 domain-containing protein 1; formin, FHOD1 | 97.55 | |
| 2bpt_A | 861 | Importin beta-1 subunit; nuclear transport, nucleo | 97.53 | |
| 1w63_A | 618 | Adapter-related protein complex 1 gamma 1 subunit; | 97.48 | |
| 2qk2_A | 242 | LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2 | 97.46 | |
| 2qk2_A | 242 | LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2 | 97.43 | |
| 1qgr_A | 876 | Protein (importin beta subunit); transport recepto | 97.42 | |
| 1qgr_A | 876 | Protein (importin beta subunit); transport recepto | 97.42 | |
| 1w63_A | 618 | Adapter-related protein complex 1 gamma 1 subunit; | 97.42 | |
| 1u6g_C | 1230 | TIP120 protein, CAND1; cullin repeat, heat repeat, | 97.4 | |
| 4a0k_B | 117 | E3 ubiquitin-protein ligase RBX1; ligase-DNA-bindi | 97.32 | |
| 2bpt_A | 861 | Importin beta-1 subunit; nuclear transport, nucleo | 97.27 | |
| 2qk1_A | 249 | Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h | 97.15 | |
| 3b2a_A | 265 | TON_1937, putative uncharacterized protein; heat-r | 97.1 | |
| 1te4_A | 131 | Conserved protein MTH187; methanobacterium thermoa | 96.94 | |
| 1te4_A | 131 | Conserved protein MTH187; methanobacterium thermoa | 96.9 | |
| 3b2a_A | 265 | TON_1937, putative uncharacterized protein; heat-r | 96.9 | |
| 2vgl_A | 621 | Adaptor protein complex AP-2, alpha 2 subunit; cyt | 96.82 | |
| 2qk1_A | 249 | Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h | 96.76 | |
| 1u6g_C | 1230 | TIP120 protein, CAND1; cullin repeat, heat repeat, | 96.51 | |
| 3dad_A | 339 | FH1/FH2 domain-containing protein 1; formin, FHOD1 | 96.43 | |
| 2ct0_A | 74 | Non-SMC element 1 homolog; ring domain, structural | 96.41 | |
| 2vgl_A | 621 | Adaptor protein complex AP-2, alpha 2 subunit; cyt | 96.32 | |
| 2db0_A | 253 | 253AA long hypothetical protein; heat repeats, hel | 96.23 | |
| 1ho8_A | 480 | Vacuolar ATP synthase subunit H; heat repeat, hydr | 96.14 | |
| 1vyx_A | 60 | ORF K3, K3RING; zinc-binding protein, ring domain, | 95.83 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 95.76 | |
| 1ho8_A | 480 | Vacuolar ATP synthase subunit H; heat repeat, hydr | 95.19 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 95.04 | |
| 3tjz_B | 355 | Coatomer subunit gamma; protein trafficking, golgi | 94.71 | |
| 3k1l_B | 381 | Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A | 94.67 | |
| 3oc3_A | 800 | Helicase MOT1, MOT1; regulation of transcription, | 94.24 | |
| 4ffb_C | 278 | Protein STU2; tubulin fold, heat repeats, cytoskel | 93.67 | |
| 3tjz_B | 355 | Coatomer subunit gamma; protein trafficking, golgi | 93.54 | |
| 3vk6_A | 101 | E3 ubiquitin-protein ligase hakai; HYB, phosphotyr | 93.35 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 93.22 | |
| 3i2d_A | 371 | E3 SUMO-protein ligase SIZ1; signal transduction, | 93.0 | |
| 2db0_A | 253 | 253AA long hypothetical protein; heat repeats, hel | 92.86 | |
| 2jun_A | 101 | Midline-1; B-BOX, TRIM, ring finger, alternative s | 92.61 | |
| 1wa5_C | 960 | Importin alpha RE-exporter; nuclear transport/comp | 92.43 | |
| 4fo9_A | 360 | E3 SUMO-protein ligase PIAS2; E3 ligase, pinit dom | 90.95 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 90.43 | |
| 2fv2_A | 268 | RCD1 required for cell differentiation1 homolog; a | 88.57 | |
| 4ffb_C | 278 | Protein STU2; tubulin fold, heat repeats, cytoskel | 88.54 | |
| 3ebb_A | 304 | Phospholipase A2-activating protein; armadillo rep | 87.34 | |
| 3nw0_A | 238 | Non-structural maintenance of chromosomes element | 87.24 | |
| 1upk_A | 341 | MO25 protein; transferase, armadillo; HET: MSE; 1. | 86.59 | |
| 2fv2_A | 268 | RCD1 required for cell differentiation1 homolog; a | 86.35 | |
| 1wa5_C | 960 | Importin alpha RE-exporter; nuclear transport/comp | 82.62 | |
| 2f31_A | 233 | Diaphanous protein homolog 1; formin,MDIA1, protei | 81.72 | |
| 3ebb_A | 304 | Phospholipase A2-activating protein; armadillo rep | 81.44 | |
| 3eg5_B | 383 | Protein diaphanous homolog 1; protein-protein comp | 81.41 |
| >3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A | Back alignment and structure |
|---|
Probab=99.97 E-value=3.8e-30 Score=278.71 Aligned_cols=265 Identities=15% Similarity=0.120 Sum_probs=233.9
Q ss_pred HHHHHHHHHHHHHccCcccchhcccCCcHHHHHHHhhccc-------cCCCHHHHHHHHHHHHHHhccC-CCCCccc-cc
Q 036199 397 CQCKVIEDYETRLEHDNQVSHSLSSTNFVEPLIRFLRDAR-------DLHDSRAQRIGCRLLLAFVSKN-RSGIPYL-NE 467 (710)
Q Consensus 397 ~q~~Al~~L~~Lak~~~~~r~~I~~~G~I~~LV~lL~s~~-------~~~d~~~q~~A~~~L~nL~~~~-~~k~~i~-~~ 467 (710)
.+++|++.|..++.+ +++|..|++.|+++.|+.+|..+. +..++.+|++|+.+|.|++.++ .+|..+. ..
T Consensus 48 ~~~~A~~aL~nls~d-~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~i~~~~ 126 (354)
T 3nmw_A 48 QICPAVCVLMKLSFD-EEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMK 126 (354)
T ss_dssp THHHHHHHHHHHHTS-HHHHHHHHHTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHCH
T ss_pred HHHHHHHHHHHHcCC-HHHHHHHHHcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcC
Confidence 467899999999976 789999999999999999996421 1124679999999999997654 4676664 45
Q ss_pred cchHHHHHHhccCcH--HHHHHHHHHHhccC--chhhHHHhhhCcHHHHHHhh-cCCCHHHHHHHHHHHHHhcc-Ccccc
Q 036199 468 DLFSLLASFLHSAAA--TEETLAILVALSSY--AYFISKIVASGALASILNML-DSPNGKFQELAIKILHNLSS-DVDIQ 541 (710)
Q Consensus 468 gaI~~LV~lL~s~~~--~~~Aa~~L~~Ls~~--~~nk~~I~~~GaI~~LV~LL-~~~~~~~~~~A~~aL~nLs~-~~en~ 541 (710)
|+||.||.+|++++. ++.|+++|.||+.. +++|..|++.|+||+||++| .++++.+++.|+.+|+||+. +++|+
T Consensus 127 GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~~nk 206 (354)
T 3nmw_A 127 GCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENK 206 (354)
T ss_dssp HHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred CcHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHccChhhh
Confidence 679999999998875 47999999999974 68999999999999999975 67889999999999999998 77899
Q ss_pred cccc-cccchhchHHhhcCc------hHHHHHHHHHHHHhc----CcchHHHHHhhcCChHHHHHHhhcCCHHHHHHHHH
Q 036199 542 SHIA-PSEFLPKLVPFLKDA------TLAVSCLVILKNMCN----TEHARVCVVETSGCLPSVAELLEIGSEEDQEHAVA 610 (710)
Q Consensus 542 ~~iv-~aG~V~~Lv~lL~~~------~~~~~al~iL~nLa~----~~e~r~~i~~~~g~I~~Lv~lL~~~s~~~ke~A~~ 610 (710)
..++ .+|+||+|+.+|.++ ++.+.|+++|+||+. +++++..+.+ .|+|+.|+.+|.+++...+++|++
T Consensus 207 ~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~-~g~i~~Lv~lL~~~~~~v~~~A~~ 285 (354)
T 3nmw_A 207 ADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRE-NNCLQTLLQHLKSHSLTIVSNACG 285 (354)
T ss_dssp HHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHT-TTHHHHHHHHTTCSCHHHHHHHHH
T ss_pred HHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHH-cCCHHHHHHHHcCCChHHHHHHHH
Confidence 9988 799999999999542 379999999999995 8999999998 799999999999999999999999
Q ss_pred HHHHHhcCChHHHHHHHhCCchHHHHHHhhcCCHHHHHHHHHHHHHhhhccCC
Q 036199 611 ILLCLCSQRDQYCKLVMNEGVIPSLVKISVYGNDKAKVSALELRRLLRDVAYS 663 (710)
Q Consensus 611 aL~~Lc~~~~~~~~~v~~~G~v~~Lv~L~~~gt~~~k~kA~~LL~~l~~~~~~ 663 (710)
+|++|+..++++++.+.+.|++|+|+.|+.++++++++.|.+.|..|......
T Consensus 286 aL~nLa~~~~~~~~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~~~~~~ 338 (354)
T 3nmw_A 286 TLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRPA 338 (354)
T ss_dssp HHHHHTSSCHHHHHHHHHTTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCCG
T ss_pred HHHHHhCCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCHH
Confidence 99999988889999999999999999999999999999999999988876443
|
| >3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.96 E-value=4.4e-29 Score=278.42 Aligned_cols=263 Identities=16% Similarity=0.128 Sum_probs=231.6
Q ss_pred HHHHHHHHHHHHccCcccchhcccCCcHHHHHHHhhccc-------cCCCHHHHHHHHHHHHHHhccC-CCCCccc-ccc
Q 036199 398 QCKVIEDYETRLEHDNQVSHSLSSTNFVEPLIRFLRDAR-------DLHDSRAQRIGCRLLLAFVSKN-RSGIPYL-NED 468 (710)
Q Consensus 398 q~~Al~~L~~Lak~~~~~r~~I~~~G~I~~LV~lL~s~~-------~~~d~~~q~~A~~~L~nL~~~~-~~k~~i~-~~g 468 (710)
+++|++.|..++. ++++|..|.+.|++++|+.+|..+. +..+..+|++|+.+|.|++.++ .+|..+. ..|
T Consensus 165 ~~qAv~aL~nls~-~~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa~~~~~~k~~i~~~~G 243 (458)
T 3nmz_A 165 ICPAVCVLMKLSF-DEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKG 243 (458)
T ss_dssp THHHHHHHHHHTT-SHHHHHHHHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHCHH
T ss_pred HHHHHHHHHHhcC-CHHHHHHHHHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHhCCCcccHHHHHHcCC
Confidence 6889999999965 4899999999999999999996321 1124678999999999997654 4666554 456
Q ss_pred chHHHHHHhccCcH--HHHHHHHHHHhccC--chhhHHHhhhCcHHHHHHhh-cCCCHHHHHHHHHHHHHhcc-Cccccc
Q 036199 469 LFSLLASFLHSAAA--TEETLAILVALSSY--AYFISKIVASGALASILNML-DSPNGKFQELAIKILHNLSS-DVDIQS 542 (710)
Q Consensus 469 aI~~LV~lL~s~~~--~~~Aa~~L~~Ls~~--~~nk~~I~~~GaI~~LV~LL-~~~~~~~~~~A~~aL~nLs~-~~en~~ 542 (710)
+||.||.+|++++. ++.|+++|.||+.. +++|..|++.|+||+||++| .++++.+++.|+.+|+||+. +++|+.
T Consensus 244 aIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s~~~~v~~~A~~aL~nLs~~~~~nk~ 323 (458)
T 3nmz_A 244 CMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKA 323 (458)
T ss_dssp HHHHHHHGGGCSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHCHHHHH
T ss_pred cHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhcCCCHHHHHHHHHHHHHHccCCHHHHH
Confidence 79999999998875 47999999999974 67999999999999999975 66789999999999999999 889999
Q ss_pred ccc-cccchhchHHhhcCc------hHHHHHHHHHHHHhc----CcchHHHHHhhcCChHHHHHHhhcCCHHHHHHHHHH
Q 036199 543 HIA-PSEFLPKLVPFLKDA------TLAVSCLVILKNMCN----TEHARVCVVETSGCLPSVAELLEIGSEEDQEHAVAI 611 (710)
Q Consensus 543 ~iv-~aG~V~~Lv~lL~~~------~~~~~al~iL~nLa~----~~e~r~~i~~~~g~I~~Lv~lL~~~s~~~ke~A~~a 611 (710)
.++ .+|+||+|+.+|..+ ++.+.|+++|+||+. +++++..+.+ .|+|+.|+.+|.+++...+++|+++
T Consensus 324 ~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~-~G~i~~Lv~LL~~~~~~v~~~A~~a 402 (458)
T 3nmz_A 324 DICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRE-NNCLQTLLQHLKSHSLTIVSNACGT 402 (458)
T ss_dssp HHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHH-TTHHHHHHHHSSCSCHHHHHHHHHH
T ss_pred HHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHH-cccHHHHHHHHcCCChHHHHHHHHH
Confidence 998 799999999999542 379999999999995 8899999998 7999999999999999999999999
Q ss_pred HHHHhcCChHHHHHHHhCCchHHHHHHhhcCCHHHHHHHHHHHHHhhhccC
Q 036199 612 LLCLCSQRDQYCKLVMNEGVIPSLVKISVYGNDKAKVSALELRRLLRDVAY 662 (710)
Q Consensus 612 L~~Lc~~~~~~~~~v~~~G~v~~Lv~L~~~gt~~~k~kA~~LL~~l~~~~~ 662 (710)
|++|+..+++++..+.+.|++|+|+.|+.++++++++.|.+.|..|.....
T Consensus 403 L~nLa~~~~~~~~~i~~~G~I~~Lv~LL~s~~~~v~~~Aa~AL~nL~~~~p 453 (458)
T 3nmz_A 403 LWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRP 453 (458)
T ss_dssp HHHHHSSCHHHHHHHHHHTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTCCS
T ss_pred HHHHHcCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCH
Confidence 999998888999999999999999999999999999999999998887643
|
| >1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 | Back alignment and structure |
|---|
Probab=99.95 E-value=9.3e-28 Score=269.22 Aligned_cols=268 Identities=15% Similarity=0.174 Sum_probs=229.4
Q ss_pred hhhcCCCHHHHHHHHHHHHHHHccCcccchhcccCCcHHHHHHHhhccccCCCHHHHHHHHHHHHHHhcc-CCCCCcccc
Q 036199 388 SRLTELNWDCQCKVIEDYETRLEHDNQVSHSLSSTNFVEPLIRFLRDARDLHDSRAQRIGCRLLLAFVSK-NRSGIPYLN 466 (710)
Q Consensus 388 ~~L~s~~~e~q~~Al~~L~~Lak~~~~~r~~I~~~G~I~~LV~lL~s~~~~~d~~~q~~A~~~L~nL~~~-~~~k~~i~~ 466 (710)
..|.+++++.|..|+..|+.++..++.++..+.+.|+||.||++|++ +++.+|+.|+.+|.|++.+ +.+|..+++
T Consensus 9 ~~L~s~~~~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~s----~~~~~~~~A~~aL~nLa~~~~~~k~~i~~ 84 (457)
T 1xm9_A 9 QYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRS----PNQNVQQAAAGALRNLVFRSTTNKLETRR 84 (457)
T ss_dssp HHHHSSCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTS----SCHHHHHHHHHHHHHHHSSCHHHHHHHHH
T ss_pred HHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHcC----CCHHHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 56788889999999999999998888889889999999999999987 7899999999999999875 788998999
Q ss_pred ccchHHHHHHhc-cCcH--HHHHHHHHHHhccCchhhHHHhhhCcHHHHHHhh--------cCC--------CHHHHHHH
Q 036199 467 EDLFSLLASFLH-SAAA--TEETLAILVALSSYAYFISKIVASGALASILNML--------DSP--------NGKFQELA 527 (710)
Q Consensus 467 ~gaI~~LV~lL~-s~~~--~~~Aa~~L~~Ls~~~~nk~~I~~~GaI~~LV~LL--------~~~--------~~~~~~~A 527 (710)
.|+||.|+.+|. +++. .+.|+++|+||+.++++|..|++ |+||+|+++| .++ ++.+.++|
T Consensus 85 ~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~~~~~~~i~~-g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v~~~a 163 (457)
T 1xm9_A 85 QNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELIA-DALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNA 163 (457)
T ss_dssp TTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTHHHHHH-HHHHHHHHHTTHHHHTCC---------CCCHHHHHHH
T ss_pred cCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcCHHhHHHHHh-ccHHHHHHHHhccccccccCccchhcccccHHHHHHH
Confidence 999999999998 7654 47999999999999999999999 9999999999 332 45666799
Q ss_pred HHHHHHhccCcccccccccc-cchhchHHhhcC--------chHHHHHHHHHHHHhcC----------------------
Q 036199 528 IKILHNLSSDVDIQSHIAPS-EFLPKLVPFLKD--------ATLAVSCLVILKNMCNT---------------------- 576 (710)
Q Consensus 528 ~~aL~nLs~~~en~~~iv~a-G~V~~Lv~lL~~--------~~~~~~al~iL~nLa~~---------------------- 576 (710)
+++|+|||.+++++..++++ |+|++|+.+|.+ ..+.+.|+.+|+||+..
T Consensus 164 ~~aL~nLs~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~~~~~~~~~ 243 (457)
T 1xm9_A 164 TGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYTE 243 (457)
T ss_dssp HHHHHHHTTSHHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC------
T ss_pred HHHHHHHccCHHHHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhcccchhccCcchhhhccccccccccc
Confidence 99999999999999999998 999999999953 45789999999999732
Q ss_pred -----------------------------cchHHHHHhhcCChHHHHHHhhc-CCHHHHHHHHHHHHHHhcCChH----H
Q 036199 577 -----------------------------EHARVCVVETSGCLPSVAELLEI-GSEEDQEHAVAILLCLCSQRDQ----Y 622 (710)
Q Consensus 577 -----------------------------~e~r~~i~~~~g~I~~Lv~lL~~-~s~~~ke~A~~aL~~Lc~~~~~----~ 622 (710)
+++...+.+ .|+++.|+.+|.. .++..++.|+++|.+||.++.. .
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~~~~~~~~~ 322 (457)
T 1xm9_A 244 KSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYH-SDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSGM 322 (457)
T ss_dssp ----------------------CCCCCSSCCGGGGGGS-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHHHHH
T ss_pred ccccchhhccchhhhhccccCCccccccCchHHHHHhC-cchHHHHHHHHhhcCCHHHHHHHHHHHHHhccCcCcchHHH
Confidence 112223334 5678899999986 4799999999999999987632 2
Q ss_pred -HHHHHhCCchHHHHHHhhcCCHHHHHHHHHHHHHhhhcc
Q 036199 623 -CKLVMNEGVIPSLVKISVYGNDKAKVSALELRRLLRDVA 661 (710)
Q Consensus 623 -~~~v~~~G~v~~Lv~L~~~gt~~~k~kA~~LL~~l~~~~ 661 (710)
+..+.++|++|+|+.|+.+++.++++.|.++|+.|....
T Consensus 323 ~~~~v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~nls~~~ 362 (457)
T 1xm9_A 323 SQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHP 362 (457)
T ss_dssp HHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSG
T ss_pred HHHHHHHcCCchHHHHHHhCCCHhHHHHHHHHHHHHhcCH
Confidence 334557899999999999999999999999999997743
|
| >3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A | Back alignment and structure |
|---|
Probab=99.94 E-value=1.2e-26 Score=264.54 Aligned_cols=268 Identities=16% Similarity=0.150 Sum_probs=228.0
Q ss_pred hhhcCCCHHHHHHHHHHHHHHHccCcccchhcccCCcHHHHHHHhhccccCCCHHHHHHHHHHHHHHhc--cCCCCCccc
Q 036199 388 SRLTELNWDCQCKVIEDYETRLEHDNQVSHSLSSTNFVEPLIRFLRDARDLHDSRAQRIGCRLLLAFVS--KNRSGIPYL 465 (710)
Q Consensus 388 ~~L~s~~~e~q~~Al~~L~~Lak~~~~~r~~I~~~G~I~~LV~lL~s~~~~~d~~~q~~A~~~L~nL~~--~~~~k~~i~ 465 (710)
..|.+++.+.|..|+..|+.++..++++|..|++.|+||.||.+|.+ ++..+|++|+.+|.|++. +..+|..++
T Consensus 55 ~~L~s~~~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~s----~~~~vq~~Aa~AL~nLa~~~~~~nk~~I~ 130 (584)
T 3l6x_A 55 AMLGFRLDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDH----PKKEVHLGACGALKNISFGRDQDNKIAIK 130 (584)
T ss_dssp HHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGGC----SSHHHHHHHHHHHHHHTSSSCHHHHHHHH
T ss_pred HHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHCC----CCHHHHHHHHHHHHHHHccCCHHHHHHHH
Confidence 67888999999999999999999999999999999999999999988 789999999999999986 368899999
Q ss_pred cccchHHHHHHhccC-cH--HHHHHHHHHHhccCchhhHHHhhhCcHHHHHHhhc------------------CCCHHHH
Q 036199 466 NEDLFSLLASFLHSA-AA--TEETLAILVALSSYAYFISKIVASGALASILNMLD------------------SPNGKFQ 524 (710)
Q Consensus 466 ~~gaI~~LV~lL~s~-~~--~~~Aa~~L~~Ls~~~~nk~~I~~~GaI~~LV~LL~------------------~~~~~~~ 524 (710)
+.|+|+.||.+|.++ +. +++|+++|++||.++++|..|++ |+||+||++|. ..++.++
T Consensus 131 ~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~~~~k~~I~~-~alp~Lv~LL~~p~sg~~~~~~~~~k~~~~~d~~V~ 209 (584)
T 3l6x_A 131 NCDGVPALVRLLRKARDMDLTEVITGTLWNLSSHDSIKMEIVD-HALHALTDEVIIPHSGWEREPNEDCKPRHIEWESVL 209 (584)
T ss_dssp HTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTSGGGHHHHHH-HTHHHHHHHTHHHHHCCC----------CCCCHHHH
T ss_pred HcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhhHHHHh-ccHHHHHHHHhcccccccccccccccccccccHHHH
Confidence 999999999999974 43 47999999999999999999995 57999999871 2357999
Q ss_pred HHHHHHHHHhccCcc-ccccccc-ccchhchHHhhc--------CchHHHHHHHHHHHHhcCcc----------------
Q 036199 525 ELAIKILHNLSSDVD-IQSHIAP-SEFLPKLVPFLK--------DATLAVSCLVILKNMCNTEH---------------- 578 (710)
Q Consensus 525 ~~A~~aL~nLs~~~e-n~~~iv~-aG~V~~Lv~lL~--------~~~~~~~al~iL~nLa~~~e---------------- 578 (710)
++|+++|+||+.+.+ ++..|++ .|+|++|+.+|. +...++.|+++|+||+..-+
T Consensus 210 ~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~~~~e~~~~~~~~~~~~~~ 289 (584)
T 3l6x_A 210 TNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQEAAPNV 289 (584)
T ss_dssp HHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTTHHHHSTTCCC--------
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhhccccccccchhhhhhhcccc
Confidence 999999999998764 5888887 466789999984 23579999999999997521
Q ss_pred ----------hHHHHHhhcCChHHHHHHhhc-CCHHHHHHHHHHHHHHhcCC----hHHHHHHHhCCchHHHHHHhhcCC
Q 036199 579 ----------ARVCVVETSGCLPSVAELLEI-GSEEDQEHAVAILLCLCSQR----DQYCKLVMNEGVIPSLVKISVYGN 643 (710)
Q Consensus 579 ----------~r~~i~~~~g~I~~Lv~lL~~-~s~~~ke~A~~aL~~Lc~~~----~~~~~~v~~~G~v~~Lv~L~~~gt 643 (710)
|...+.+ .++|+.|+.+|.. .++.++|+|+++|.+||.+. ...+..+.++|++|.|+.|+.+++
T Consensus 290 ~~~~~~~~~~Gve~L~~-~~~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~Lv~LL~s~~ 368 (584)
T 3l6x_A 290 ANNTGTSPARGYELLFQ-PEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADLLTNEH 368 (584)
T ss_dssp ------CCCCGGGGGGS-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSSCSHHHHHHHHHHTSHHHHHHHHHGGGCSC
T ss_pred cccccccCchhHHHHhc-ccHHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCcHHHHHHHHcCCC
Confidence 1111222 3456778899964 68999999999999999876 234556677899999999999999
Q ss_pred HHHHHHHHHHHHHhhhcc
Q 036199 644 DKAKVSALELRRLLRDVA 661 (710)
Q Consensus 644 ~~~k~kA~~LL~~l~~~~ 661 (710)
.++++.|.++|+.|....
T Consensus 369 ~~v~~~A~~aL~nLs~~~ 386 (584)
T 3l6x_A 369 ERVVKAASGALRNLAVDA 386 (584)
T ss_dssp HHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHhCCh
Confidence 999999999999998764
|
| >1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 | Back alignment and structure |
|---|
Probab=99.93 E-value=3.6e-25 Score=248.16 Aligned_cols=268 Identities=16% Similarity=0.136 Sum_probs=229.9
Q ss_pred hhhcCCCHHHHHHHHHHHHHHHccCcccchhcccCCcHHHHHHHhh-ccccCCCHHHHHHHHHHHHHHhccCCCCCcccc
Q 036199 388 SRLTELNWDCQCKVIEDYETRLEHDNQVSHSLSSTNFVEPLIRFLR-DARDLHDSRAQRIGCRLLLAFVSKNRSGIPYLN 466 (710)
Q Consensus 388 ~~L~s~~~e~q~~Al~~L~~Lak~~~~~r~~I~~~G~I~~LV~lL~-s~~~~~d~~~q~~A~~~L~nL~~~~~~k~~i~~ 466 (710)
..|.+++.+.|..|++.|+.++.++++++..|++.|+||.|+++|. + ++.+++++|+.+|.|++.++.+|..+++
T Consensus 51 ~lL~s~~~~~~~~A~~aL~nLa~~~~~~k~~i~~~G~i~~Lv~lL~~~----~~~~~~~~a~~aL~nLa~~~~~~~~i~~ 126 (457)
T 1xm9_A 51 DLLRSPNQNVQQAAAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRT----GNAEIQKQLTGLLWNLSSTDELKEELIA 126 (457)
T ss_dssp HHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHHHTTC----CCHHHHHHHHHHHHHHHTSSSTHHHHHH
T ss_pred HHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhhC----CCHHHHHHHHHHHHHHhcCHHhHHHHHh
Confidence 6677889999999999999999988999999999999999999998 5 6899999999999999888888888888
Q ss_pred ccchHHHHHHhc--------cCcH----------HHHHHHHHHHhccCchhhHHHhhh-CcHHHHHHhhcC---------
Q 036199 467 EDLFSLLASFLH--------SAAA----------TEETLAILVALSSYAYFISKIVAS-GALASILNMLDS--------- 518 (710)
Q Consensus 467 ~gaI~~LV~lL~--------s~~~----------~~~Aa~~L~~Ls~~~~nk~~I~~~-GaI~~LV~LL~~--------- 518 (710)
|++|.|+.+|. ++.. .++|+++|+||+..++++..+.+. |++++|+.+|.+
T Consensus 127 -g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v~~~a~~aL~nLs~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~ 205 (457)
T 1xm9_A 127 -DALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDD 205 (457)
T ss_dssp -HHHHHHHHHTTHHHHTCC---------CCCHHHHHHHHHHHHHHTTSHHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTC
T ss_pred -ccHHHHHHHHhccccccccCccchhcccccHHHHHHHHHHHHHHccCHHHHHHHHHcCCCHHHHHHHHHhhccccCCch
Confidence 99999999993 2211 138999999999889999999997 999999988853
Q ss_pred --------------------------------------------------------------------------------
Q 036199 519 -------------------------------------------------------------------------------- 518 (710)
Q Consensus 519 -------------------------------------------------------------------------------- 518 (710)
T Consensus 206 ~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l 285 (457)
T 1xm9_A 206 KSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAI 285 (457)
T ss_dssp TTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC----------------------------CCCCCSSCCGGGGGGSHHHH
T ss_pred HHHHHHHHHHHhcccchhccCcchhhhcccccccccccccccchhhccchhhhhccccCCccccccCchHHHHHhCcchH
Confidence
Q ss_pred ----------CCHHHHHHHHHHHHHhccCccc------ccccccccchhchHHhhcC--chHHHHHHHHHHHHhcCcchH
Q 036199 519 ----------PNGKFQELAIKILHNLSSDVDI------QSHIAPSEFLPKLVPFLKD--ATLAVSCLVILKNMCNTEHAR 580 (710)
Q Consensus 519 ----------~~~~~~~~A~~aL~nLs~~~en------~~~iv~aG~V~~Lv~lL~~--~~~~~~al~iL~nLa~~~e~r 580 (710)
.++..++.|+++|.||+..... +..+.++|++|.|+++|.+ .+++..|+++|.||+.+++.+
T Consensus 286 ~~L~~lL~~~~~~~~~e~a~~aL~nl~~~~~~~~~~~~~~~v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~nls~~~~~~ 365 (457)
T 1xm9_A 286 RTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHPLLH 365 (457)
T ss_dssp HHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHHHHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSGGGH
T ss_pred HHHHHHHhhcCCHHHHHHHHHHHHHhccCcCcchHHHHHHHHHHcCCchHHHHHHhCCCHhHHHHHHHHHHHHhcCHHHH
Confidence 1245667789999999875433 2233469999999999965 467999999999999999888
Q ss_pred HHHHhhcCChHHHHHHhhcCC------HHHHHHHHHHHHHHhcCChHHHHHHHhCCchHHHHHHhhcC-CHHHHHHHHHH
Q 036199 581 VCVVETSGCLPSVAELLEIGS------EEDQEHAVAILLCLCSQRDQYCKLVMNEGVIPSLVKISVYG-NDKAKVSALEL 653 (710)
Q Consensus 581 ~~i~~~~g~I~~Lv~lL~~~s------~~~ke~A~~aL~~Lc~~~~~~~~~v~~~G~v~~Lv~L~~~g-t~~~k~kA~~L 653 (710)
..|.. |+|+.|+++|..++ +++...++++|.++...+++++..+.+.|++++|+.|+.++ +++++++|.++
T Consensus 366 ~~i~~--~~i~~Lv~lL~~~~~~~~~~~~v~~~~l~~l~ni~~~~~~~~~~i~~~g~l~~L~~L~~~~~~~~i~~~A~~~ 443 (457)
T 1xm9_A 366 RVMGN--QVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAAEAARLL 443 (457)
T ss_dssp HHHHH--HTHHHHHHTTTSCCSCSTTHHHHHHHHHHHHHHHHTTCTHHHHHHCCHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHH--hhhHHHHHhccCCCCCCCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHHcCCCcHHHHHHHHHH
Confidence 87765 68999999999864 36788999999999998888999999999999999999999 99999999999
Q ss_pred HHHhhhccC
Q 036199 654 RRLLRDVAY 662 (710)
Q Consensus 654 L~~l~~~~~ 662 (710)
|..+-.+++
T Consensus 444 L~~~~~~~~ 452 (457)
T 1xm9_A 444 LSDMWSSKE 452 (457)
T ss_dssp HHTTSSSTT
T ss_pred HHHHHcchh
Confidence 997665443
|
| >3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.93 E-value=1.3e-25 Score=250.41 Aligned_cols=267 Identities=12% Similarity=0.089 Sum_probs=228.0
Q ss_pred CCHHHHHHHHHHHHHHHccCcccchhcccCCcH----------HHHHHHhhccccCCC----------HHHHHHHHHHHH
Q 036199 393 LNWDCQCKVIEDYETRLEHDNQVSHSLSSTNFV----------EPLIRFLRDARDLHD----------SRAQRIGCRLLL 452 (710)
Q Consensus 393 ~~~e~q~~Al~~L~~Lak~~~~~r~~I~~~G~I----------~~LV~lL~s~~~~~d----------~~~q~~A~~~L~ 452 (710)
++.+.|.+|+++|..++..+++......+.|++ +.++++|.+.....| ...+.+|+.+|.
T Consensus 94 ~~~~~~~~a~~al~ni~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qAv~aL~ 173 (458)
T 3nmz_A 94 GSKEARARASAALHNIIHSQPDDKRGRREIRVLHLLEQIRAYCETCWEWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLM 173 (458)
T ss_dssp CCHHHHHHHHHHHHHHHHHSCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSSSCCCSCC--CCCTTTTHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhhHHHHHHHHhhccccccccCCccchhhHHHHHHHHHHH
Confidence 457899999999999999999888877788887 667777876321111 012348999999
Q ss_pred HHhccCCCCCccccccchHHHHHHhccC-----------c--HHHHHHHHHHHhccCch-hhHHHhh-hCcHHHHHHhhc
Q 036199 453 AFVSKNRSGIPYLNEDLFSLLASFLHSA-----------A--ATEETLAILVALSSYAY-FISKIVA-SGALASILNMLD 517 (710)
Q Consensus 453 nL~~~~~~k~~i~~~gaI~~LV~lL~s~-----------~--~~~~Aa~~L~~Ls~~~~-nk~~I~~-~GaI~~LV~LL~ 517 (710)
|++.++++|..+++.|++++|+.+|... + .+++|+++|.||+..++ +|..|.. .|+||+||.+|.
T Consensus 174 nls~~~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~ 253 (458)
T 3nmz_A 174 KLSFDEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLK 253 (458)
T ss_dssp HHTTSHHHHHHHHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHCHHHHHHHHHGGG
T ss_pred HhcCCHHHHHHHHHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHhCCCcccHHHHHHcCCcHHHHHHHHh
Confidence 9988888999999999999999999521 1 13699999999997654 7777764 677999999999
Q ss_pred CCCHHHHHHHHHHHHHhccC--cccccccccccchhchHHhh-c--CchHHHHHHHHHHHHhc-CcchHHHHHhhcCChH
Q 036199 518 SPNGKFQELAIKILHNLSSD--VDIQSHIAPSEFLPKLVPFL-K--DATLAVSCLVILKNMCN-TEHARVCVVETSGCLP 591 (710)
Q Consensus 518 ~~~~~~~~~A~~aL~nLs~~--~en~~~iv~aG~V~~Lv~lL-~--~~~~~~~al~iL~nLa~-~~e~r~~i~~~~g~I~ 591 (710)
++++++++.|+++|.||+.. ++|+..++++|+||+|+++| . +..+.+.|+.+|+||+. +++++..|+...|+|+
T Consensus 254 s~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s~~~~v~~~A~~aL~nLs~~~~~nk~~I~~~~Gal~ 333 (458)
T 3nmz_A 254 SESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALA 333 (458)
T ss_dssp CSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHCHHHHHHHHHSTTHHH
T ss_pred CCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHhcCcHH
Confidence 99999999999999999984 57899999999999999985 3 35678999999999999 8899999984489999
Q ss_pred HHHHHhhcCCH----HHHHHHHHHHHHHhc---CChHHHHHHHhCCchHHHHHHhhcCCHHHHHHHHHHHHHhhh
Q 036199 592 SVAELLEIGSE----EDQEHAVAILLCLCS---QRDQYCKLVMNEGVIPSLVKISVYGNDKAKVSALELRRLLRD 659 (710)
Q Consensus 592 ~Lv~lL~~~s~----~~ke~A~~aL~~Lc~---~~~~~~~~v~~~G~v~~Lv~L~~~gt~~~k~kA~~LL~~l~~ 659 (710)
.|+.+|..+++ ..+++|+++|.+|+. .++++++.+.+.|++|+|+.++.+++..+++.|.+.|..|..
T Consensus 334 ~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv~LL~~~~~~v~~~A~~aL~nLa~ 408 (458)
T 3nmz_A 334 FLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSA 408 (458)
T ss_dssp HHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHSSCSCHHHHHHHHHHHHHHHS
T ss_pred HHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcccHHHHHHHHcCCChHHHHHHHHHHHHHHc
Confidence 99999998655 489999999999997 677899999999999999999999999999999999998874
|
| >3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A | Back alignment and structure |
|---|
Probab=99.92 E-value=2.8e-25 Score=240.53 Aligned_cols=223 Identities=17% Similarity=0.128 Sum_probs=198.5
Q ss_pred CHHHHHHHHHHHHHHHccCcccchhcc-cCCcHHHHHHHhhccccCCCHHHHHHHHHHHHHHhcc--CCCCCccccccch
Q 036199 394 NWDCQCKVIEDYETRLEHDNQVSHSLS-STNFVEPLIRFLRDARDLHDSRAQRIGCRLLLAFVSK--NRSGIPYLNEDLF 470 (710)
Q Consensus 394 ~~e~q~~Al~~L~~Lak~~~~~r~~I~-~~G~I~~LV~lL~s~~~~~d~~~q~~A~~~L~nL~~~--~~~k~~i~~~gaI 470 (710)
+.+.|..|++.|..++..+++++..+. ..|+||.||++|.+ ++.++|+.|+.+|.|++.. +.+|..+++.|+|
T Consensus 97 ~~~~q~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s----~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~I 172 (354)
T 3nmw_A 97 SITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKS----ESEDLQQVIASVLRNLSWRADVNSKKTLREVGSV 172 (354)
T ss_dssp HHHHHHHHHHHHHHHTSSCHHHHHHHHHCHHHHHHHHHGGGC----SCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHH
T ss_pred CHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCcHHHHHHHHCC----CCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCH
Confidence 367899999999999999888998885 45679999999987 7899999999999999763 4678888899999
Q ss_pred HHHHHHh-ccCcH--HHHHHHHHHHhcc-CchhhHHHh-hhCcHHHHHHhhcCCCH----HHHHHHHHHHHHhcc----C
Q 036199 471 SLLASFL-HSAAA--TEETLAILVALSS-YAYFISKIV-ASGALASILNMLDSPNG----KFQELAIKILHNLSS----D 537 (710)
Q Consensus 471 ~~LV~lL-~s~~~--~~~Aa~~L~~Ls~-~~~nk~~I~-~~GaI~~LV~LL~~~~~----~~~~~A~~aL~nLs~----~ 537 (710)
|.||.+| ++++. .+.|+++|+||+. .+++|..|+ ..|+||+|+++|.+++. ++++.|+++|+||+. +
T Consensus 173 p~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~ 252 (354)
T 3nmw_A 173 KALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATN 252 (354)
T ss_dssp HHHHHHHHHCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHccChhhhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCC
Confidence 9999975 44543 4789999999998 778999999 79999999999987754 589999999999995 8
Q ss_pred cccccccccccchhchHHhhcCc--hHHHHHHHHHHHHhc-CcchHHHHHhhcCChHHHHHHhhcCCHHHHHHHHHHHHH
Q 036199 538 VDIQSHIAPSEFLPKLVPFLKDA--TLAVSCLVILKNMCN-TEHARVCVVETSGCLPSVAELLEIGSEEDQEHAVAILLC 614 (710)
Q Consensus 538 ~en~~~iv~aG~V~~Lv~lL~~~--~~~~~al~iL~nLa~-~~e~r~~i~~~~g~I~~Lv~lL~~~s~~~ke~A~~aL~~ 614 (710)
++++..++++|+|++|+.+|.++ .+++.|+++|+||+. +++++..+++ .|+|+.|+++|.+++++.+++|+++|.+
T Consensus 253 ~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~-~G~i~~Lv~LL~s~~~~i~~~A~~aL~n 331 (354)
T 3nmw_A 253 EDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWD-MGAVSMLKNLIHSKHKMIAMGSAAALRN 331 (354)
T ss_dssp HHHHHHHHTTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHH-TTHHHHHHTTTTCSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHcCCChHHHHHHHHHHHHHhCCCHHHHHHHHH-CCCHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 89999999999999999999654 579999999999995 7899999998 8999999999999999999999999999
Q ss_pred HhcCChH
Q 036199 615 LCSQRDQ 621 (710)
Q Consensus 615 Lc~~~~~ 621 (710)
|+.+.+.
T Consensus 332 L~~~~~~ 338 (354)
T 3nmw_A 332 LMANRPA 338 (354)
T ss_dssp HHTTCCG
T ss_pred HHcCCHH
Confidence 9998754
|
| >3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A | Back alignment and structure |
|---|
Probab=99.91 E-value=7.7e-24 Score=241.52 Aligned_cols=265 Identities=15% Similarity=0.163 Sum_probs=218.1
Q ss_pred hhhcCCCHHHHHHHHHHHHHHHcc-CcccchhcccCCcHHHHHHHhhccccCCCHHHHHHHHHHHHHHhccCCCCCcccc
Q 036199 388 SRLTELNWDCQCKVIEDYETRLEH-DNQVSHSLSSTNFVEPLIRFLRDARDLHDSRAQRIGCRLLLAFVSKNRSGIPYLN 466 (710)
Q Consensus 388 ~~L~s~~~e~q~~Al~~L~~Lak~-~~~~r~~I~~~G~I~~LV~lL~s~~~~~d~~~q~~A~~~L~nL~~~~~~k~~i~~ 466 (710)
..|.+++.+.|..|+++|+.++.. ++++|..|++.|+|+.||++|.+. .+.++|++|+.+|.+|+.++.+|..|+
T Consensus 97 ~LL~s~~~~vq~~Aa~AL~nLa~~~~~~nk~~I~~~GaIp~LV~LL~s~---~~~~~~e~aa~aL~nLS~~~~~k~~I~- 172 (584)
T 3l6x_A 97 GLLDHPKKEVHLGACGALKNISFGRDQDNKIAIKNCDGVPALVRLLRKA---RDMDLTEVITGTLWNLSSHDSIKMEIV- 172 (584)
T ss_dssp HGGGCSSHHHHHHHHHHHHHHTSSSCHHHHHHHHHTTHHHHHHHHHHHC---CSHHHHHHHHHHHHHHTTSGGGHHHHH-
T ss_pred HHHCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHcCCHHHHHHHHcCC---CCHHHHHHHHHHHHHHhCCchhhHHHH-
Confidence 678889999999999999999985 789999999999999999999862 478899999999999988888888887
Q ss_pred ccchHHHHHHhc---cC-----------------cHHHHHHHHHHHhccCc-hhhHHHhh-hCcHHHHHHhhcC------
Q 036199 467 EDLFSLLASFLH---SA-----------------AATEETLAILVALSSYA-YFISKIVA-SGALASILNMLDS------ 518 (710)
Q Consensus 467 ~gaI~~LV~lL~---s~-----------------~~~~~Aa~~L~~Ls~~~-~nk~~I~~-~GaI~~LV~LL~~------ 518 (710)
.|+|+.|+++|. ++ ...++|+++|+||+... ++|..|++ .|+|++||.+|++
T Consensus 173 ~~alp~Lv~LL~~p~sg~~~~~~~~~k~~~~~d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~ 252 (584)
T 3l6x_A 173 DHALHALTDEVIIPHSGWEREPNEDCKPRHIEWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKD 252 (584)
T ss_dssp HHTHHHHHHHTHHHHHCCC----------CCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHHTTC
T ss_pred hccHHHHHHHHhcccccccccccccccccccccHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhcccC
Confidence 468999999872 11 12368999999999765 45888886 4667788877642
Q ss_pred C--------------------------------------------------------------------CHHHHHHHHHH
Q 036199 519 P--------------------------------------------------------------------NGKFQELAIKI 530 (710)
Q Consensus 519 ~--------------------------------------------------------------------~~~~~~~A~~a 530 (710)
. ++.+++.|++|
T Consensus 253 ~~~~~~enav~aL~NLs~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~E~Aa~A 332 (584)
T 3l6x_A 253 SDSKLVENCVCLLRNLSYQVHREIPQAERYQEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGA 332 (584)
T ss_dssp CSCHHHHHHHHHHHHHHTTHHHHSTTCCC--------------CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhhccccccccchhhhhhhcccccccccccCchhHHHHhcccHHHHHHHHHccCCCHHHHHHHHHH
Confidence 1 23444555566
Q ss_pred HHHhccCc-----ccccccccccchhchHHhhcC--chHHHHHHHHHHHHhcCcchHHHHHhhcCChHHHHHHhhcC---
Q 036199 531 LHNLSSDV-----DIQSHIAPSEFLPKLVPFLKD--ATLAVSCLVILKNMCNTEHARVCVVETSGCLPSVAELLEIG--- 600 (710)
Q Consensus 531 L~nLs~~~-----en~~~iv~aG~V~~Lv~lL~~--~~~~~~al~iL~nLa~~~e~r~~i~~~~g~I~~Lv~lL~~~--- 600 (710)
|.||+... .++..+.+.|++|.|+++|.. ..+...|+++|+||+.++.++..| . .|+|+.||.+|..+
T Consensus 333 L~nL~ag~~~~~~~~~~~v~~~~glp~Lv~LL~s~~~~v~~~A~~aL~nLs~~~~~~~~I-~-~g~ip~LV~LL~~~~~~ 410 (584)
T 3l6x_A 333 IQNLCAGRWTYGRYIRSALRQEKALSAIADLLTNEHERVVKAASGALRNLAVDARNKELI-G-KHAIPNLVKNLPGGQQN 410 (584)
T ss_dssp HHHHHSSCSHHHHHHHHHHTSHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCSCHHHH-H-HHHHHHHHHTSSSSSCS
T ss_pred HHHHHcCCccccHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhCChhHHHHH-H-hCCHHHHHHHhcCCccc
Confidence 66665432 122334557899999999954 567999999999999999999877 4 58999999999976
Q ss_pred -----CHHHHHHHHHHHHHHhcCChHHHHHHHhCCchHHHHHHhhcC--CHHHHHHHHHHHHHhh
Q 036199 601 -----SEEDQEHAVAILLCLCSQRDQYCKLVMNEGVIPSLVKISVYG--NDKAKVSALELRRLLR 658 (710)
Q Consensus 601 -----s~~~ke~A~~aL~~Lc~~~~~~~~~v~~~G~v~~Lv~L~~~g--t~~~k~kA~~LL~~l~ 658 (710)
+.+....|+++|.+|+..++++++.+.+.|++|.|+.|+.++ ++++++.|..+|..|-
T Consensus 411 ~~~~~s~~v~~~a~~tL~NL~a~~~~~~~~I~~~g~I~~Lv~LL~s~~~~~~v~k~Aa~vL~nl~ 475 (584)
T 3l6x_A 411 SSWNFSEDTVISILNTINEVIAENLEAAKKLRETQGIEKLVLINKSGNRSEKEVRAAALVLQTIW 475 (584)
T ss_dssp GGGTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTCSSSCHHHHHHHHHHHHHHH
T ss_pred ccccchHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCCChHHHHHHHHHHHHHH
Confidence 578899999999999999999999999999999999999987 8999999999999774
|
| >3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.91 E-value=3.4e-24 Score=252.08 Aligned_cols=269 Identities=13% Similarity=0.110 Sum_probs=233.1
Q ss_pred hhhcCCCHHHHHHHHHHHHHHHccCcc-----------------------------cc---hhcccCCcHHHHHHHhhcc
Q 036199 388 SRLTELNWDCQCKVIEDYETRLEHDNQ-----------------------------VS---HSLSSTNFVEPLIRFLRDA 435 (710)
Q Consensus 388 ~~L~s~~~e~q~~Al~~L~~Lak~~~~-----------------------------~r---~~I~~~G~I~~LV~lL~s~ 435 (710)
..|++.+...|..|++.|..++.+.+. ++ ..+++.|++|.|+.+|++
T Consensus 428 ~LL~s~d~~i~~~al~~L~NLt~~~d~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~VveaGaVp~LV~LL~s- 506 (810)
T 3now_A 428 DLARGGNQSCLYGVVTTFVNLCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITTALCALAKT- 506 (810)
T ss_dssp HHHHTTCGGGHHHHHHHHHHHTTCSCCCCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHTC-
T ss_pred HHhCCCChHHHHHHHHHHHHHcCCchhhhhhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHHCcCHHHHHHHHcC-
Confidence 556677888899999999999985421 22 567889999999999988
Q ss_pred ccCCCHHHHHHHHHHHHHHhccCCCCCccccccchHHHHHHhccCcH--HHHHHHHHHHhccCchhhHHHh---hhCcHH
Q 036199 436 RDLHDSRAQRIGCRLLLAFVSKNRSGIPYLNEDLFSLLASFLHSAAA--TEETLAILVALSSYAYFISKIV---ASGALA 510 (710)
Q Consensus 436 ~~~~d~~~q~~A~~~L~nL~~~~~~k~~i~~~gaI~~LV~lL~s~~~--~~~Aa~~L~~Ls~~~~nk~~I~---~~GaI~ 510 (710)
+++.+|++|+++|.|++.+..++..+++.|++|+|+.+|.++.. +++|+++|.+|+........+. ..|+||
T Consensus 507 ---~s~~vqe~Aa~aL~NLA~d~~~r~~Vv~~Gaip~Lv~LL~s~~~~~k~~Aa~AL~nL~~~~~p~~~~~~~~~~~aIp 583 (810)
T 3now_A 507 ---ESHNSQELIARVLNAVCGLKELRGKVVQEGGVKALLRMALEGTEKGKRHATQALARIGITINPEVSFSGQRSLDVIR 583 (810)
T ss_dssp ---CCHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHTTTHHHHHTHH
T ss_pred ---CCHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHccCCHHHHHHHHHHHHHHhcCCChhhhhcchhhhcHHH
Confidence 78999999999999998877788888999999999999998875 4799999999986544443332 257999
Q ss_pred HHHHhhcCC-CHHHHHHHHHHHHHhccC-cccccccccccchhchHHhhcC--chHHHHHHHHHHHHhcCcchHHHHHhh
Q 036199 511 SILNMLDSP-NGKFQELAIKILHNLSSD-VDIQSHIAPSEFLPKLVPFLKD--ATLAVSCLVILKNMCNTEHARVCVVET 586 (710)
Q Consensus 511 ~LV~LL~~~-~~~~~~~A~~aL~nLs~~-~en~~~iv~aG~V~~Lv~lL~~--~~~~~~al~iL~nLa~~~e~r~~i~~~ 586 (710)
+|+.+|.++ +...+..|++||.||+.. ++++..++++|+++.|+.+|.+ +.++..|+.+|+||+.+++.+..++..
T Consensus 584 pLv~LL~~~~~~l~~~eAl~AL~NLa~~~d~~~~~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa~~~~~~~~~v~~ 663 (810)
T 3now_A 584 PLLNLLQQDCTALENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMSEDVIKMFEGN 663 (810)
T ss_dssp HHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSCCTTHHHHHHHHHHHHTTSHHHHHHHHSS
T ss_pred HHHHHhCCCCcHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCChHHHHHHHhc
Confidence 999999866 455667899999999986 5788999999999999999954 578999999999999999999888854
Q ss_pred cCChHHHHHHhhcCCHHHHHHHHHHHHHHhcCChHHHHHHHh-CCchHHHHHHhhcCCHHHHHHHHHHHHHhhhc
Q 036199 587 SGCLPSVAELLEIGSEEDQEHAVAILLCLCSQRDQYCKLVMN-EGVIPSLVKISVYGNDKAKVSALELRRLLRDV 660 (710)
Q Consensus 587 ~g~I~~Lv~lL~~~s~~~ke~A~~aL~~Lc~~~~~~~~~v~~-~G~v~~Lv~L~~~gt~~~k~kA~~LL~~l~~~ 660 (710)
.|+++.|+.++...+...|+.|+++|.+|+.+++..++.+++ .|++++|+.|+.+++.+.|+.|.+.|..+...
T Consensus 664 ~g~l~~Lv~LL~s~d~~vq~~Aa~ALanLt~~s~~~~~~ii~~~g~I~~Lv~LL~s~d~~vq~~A~~aL~NL~~~ 738 (810)
T 3now_A 664 NDRVKFLALLCEDEDEETATACAGALAIITSVSVKCCEKILAIASWLDILHTLIANPSPAVQHRGIVIILNMINA 738 (810)
T ss_dssp SSHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHCHHHHHHHHTSTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHTT
T ss_pred cCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHCCCCHHHHHHHHHHHHHHHhC
Confidence 689999999999999999999999999999977678888888 89999999999999999999999999887653
|
| >4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene} | Back alignment and structure |
|---|
Probab=99.91 E-value=2.3e-23 Score=211.85 Aligned_cols=238 Identities=20% Similarity=0.244 Sum_probs=215.2
Q ss_pred CcHHHHHHHhhccccCCCHHHHHHHHHHHHHHhccC-CCCCccccccchHHHHHHhccCcHH--HHHHHHHHHhccC-ch
Q 036199 423 NFVEPLIRFLRDARDLHDSRAQRIGCRLLLAFVSKN-RSGIPYLNEDLFSLLASFLHSAAAT--EETLAILVALSSY-AY 498 (710)
Q Consensus 423 G~I~~LV~lL~s~~~~~d~~~q~~A~~~L~nL~~~~-~~k~~i~~~gaI~~LV~lL~s~~~~--~~Aa~~L~~Ls~~-~~ 498 (710)
|.|+.|+.+|.+ .+.++|..|+.+|.+++.+. .++..+++.|+++.|+.+|.+++.. ..|+++|.+|+.. ++
T Consensus 2 ~~i~~L~~~L~~----~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~ 77 (252)
T 4hxt_A 2 NDVEKLVKLLTS----TDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDE 77 (252)
T ss_dssp CHHHHHHHHTTC----SCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHH
T ss_pred CcHHHHHHHHcC----CCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChH
Confidence 679999999987 67999999999999997655 3667777899999999999988753 6999999999977 89
Q ss_pred hhHHHhhhCcHHHHHHhhcCCCHHHHHHHHHHHHHhc-cCcccccccccccchhchHHhhcC--chHHHHHHHHHHHHhc
Q 036199 499 FISKIVASGALASILNMLDSPNGKFQELAIKILHNLS-SDVDIQSHIAPSEFLPKLVPFLKD--ATLAVSCLVILKNMCN 575 (710)
Q Consensus 499 nk~~I~~~GaI~~LV~LL~~~~~~~~~~A~~aL~nLs-~~~en~~~iv~aG~V~~Lv~lL~~--~~~~~~al~iL~nLa~ 575 (710)
++..+.+.|+++.|+.+|.++++.++..|+++|.||+ .+++++..+++.|+++.|+++|.+ +.++..|+.+|.+|+.
T Consensus 78 ~~~~~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~ 157 (252)
T 4hxt_A 78 AIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIAS 157 (252)
T ss_dssp HHHHHHHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHc
Confidence 9999999999999999999999999999999999999 578889999999999999999965 4689999999999998
Q ss_pred C-cchHHHHHhhcCChHHHHHHhhcCCHHHHHHHHHHHHHHhcCChHHHHHHHhCCchHHHHHHhhcCCHHHHHHHHHHH
Q 036199 576 T-EHARVCVVETSGCLPSVAELLEIGSEEDQEHAVAILLCLCSQRDQYCKLVMNEGVIPSLVKISVYGNDKAKVSALELR 654 (710)
Q Consensus 576 ~-~e~r~~i~~~~g~I~~Lv~lL~~~s~~~ke~A~~aL~~Lc~~~~~~~~~v~~~G~v~~Lv~L~~~gt~~~k~kA~~LL 654 (710)
. ++.+..+.+ .|+++.|+.+|.++++..++.|+++|.++|..++..+..+.+.|+++.|+.++.++++.+++.|.++|
T Consensus 158 ~~~~~~~~~~~-~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L 236 (252)
T 4hxt_A 158 GPDEAIKAIVD-AGGVEVLVKLLTSTDSEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQKLLTSTDSEVQKEAQRAL 236 (252)
T ss_dssp SCHHHHHHHHH-TTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHH
T ss_pred CCHHHHHHHHH-CcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHCCCcHHHHHHHHHHH
Confidence 5 445567777 89999999999999999999999999999998888899999999999999999999999999999999
Q ss_pred HHhhhccCCcc
Q 036199 655 RLLRDVAYSVE 665 (710)
Q Consensus 655 ~~l~~~~~~~~ 665 (710)
..|........
T Consensus 237 ~~l~~~~~~~~ 247 (252)
T 4hxt_A 237 ENIKSGGWLEH 247 (252)
T ss_dssp HHHHHTCBCCC
T ss_pred HHHHcCCCccc
Confidence 99988765543
|
| >3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.91 E-value=8.7e-24 Score=248.65 Aligned_cols=273 Identities=14% Similarity=0.134 Sum_probs=237.1
Q ss_pred hhhcCCCHHHHHHHHHHHHHHHccCcccchhcccCCcHHHHHHHhhccccCCCHHHHHHHHHHHHHHhccCCCCCcc---
Q 036199 388 SRLTELNWDCQCKVIEDYETRLEHDNQVSHSLSSTNFVEPLIRFLRDARDLHDSRAQRIGCRLLLAFVSKNRSGIPY--- 464 (710)
Q Consensus 388 ~~L~s~~~e~q~~Al~~L~~Lak~~~~~r~~I~~~G~I~~LV~lL~s~~~~~d~~~q~~A~~~L~nL~~~~~~k~~i--- 464 (710)
..|.+++++.|.+|++.|..++. ++++|..+++.|++++|+.+|.+ ++...|++|+.+|.+++.+......+
T Consensus 502 ~LL~s~s~~vqe~Aa~aL~NLA~-d~~~r~~Vv~~Gaip~Lv~LL~s----~~~~~k~~Aa~AL~nL~~~~~p~~~~~~~ 576 (810)
T 3now_A 502 ALAKTESHNSQELIARVLNAVCG-LKELRGKVVQEGGVKALLRMALE----GTEKGKRHATQALARIGITINPEVSFSGQ 576 (810)
T ss_dssp HHHTCCCHHHHHHHHHHHHHHHT-SHHHHHHHHHTTHHHHHHHHHHS----SCHHHHHHHHHHHHHHHHHSCHHHHTTTH
T ss_pred HHHcCCCHHHHHHHHHHHHHHcC-CHHHHHHHHHCCCHHHHHHHHcc----CCHHHHHHHHHHHHHHhcCCChhhhhcch
Confidence 66788899999999999999995 56799999999999999999987 67899999999999996533222211
Q ss_pred ccccchHHHHHHhccCcH---HHHHHHHHHHhccC-chhhHHHhhhCcHHHHHHhhcCCCHHHHHHHHHHHHHhccCccc
Q 036199 465 LNEDLFSLLASFLHSAAA---TEETLAILVALSSY-AYFISKIVASGALASILNMLDSPNGKFQELAIKILHNLSSDVDI 540 (710)
Q Consensus 465 ~~~gaI~~LV~lL~s~~~---~~~Aa~~L~~Ls~~-~~nk~~I~~~GaI~~LV~LL~~~~~~~~~~A~~aL~nLs~~~en 540 (710)
...|++|+|+.+|.++.. ...|+++|.||+.. ++++..|++.|++|.|+.+|.++++.+++.|+++|.||+.++++
T Consensus 577 ~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d~~~~~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa~~~~~ 656 (810)
T 3now_A 577 RSLDVIRPLLNLLQQDCTALENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMSEDV 656 (810)
T ss_dssp HHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSCCTTHHHHHHHHHHHHTTSHHH
T ss_pred hhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCChHH
Confidence 124799999999986633 24799999999976 68999999999999999999999999999999999999999999
Q ss_pred cccccc-ccchhchHHhhcC--chHHHHHHHHHHHHhc-CcchHHHHHhhcCChHHHHHHhhcCCHHHHHHHHHHHHHHh
Q 036199 541 QSHIAP-SEFLPKLVPFLKD--ATLAVSCLVILKNMCN-TEHARVCVVETSGCLPSVAELLEIGSEEDQEHAVAILLCLC 616 (710)
Q Consensus 541 ~~~iv~-aG~V~~Lv~lL~~--~~~~~~al~iL~nLa~-~~e~r~~i~~~~g~I~~Lv~lL~~~s~~~ke~A~~aL~~Lc 616 (710)
+..++. .|+++.|+.++.. ..++..|+++|+||+. ++.....+++..|+|+.|+.+|.+++.+.|+.|+++|.+++
T Consensus 657 ~~~~v~~~g~l~~Lv~LL~s~d~~vq~~Aa~ALanLt~~s~~~~~~ii~~~g~I~~Lv~LL~s~d~~vq~~A~~aL~NL~ 736 (810)
T 3now_A 657 IKMFEGNNDRVKFLALLCEDEDEETATACAGALAIITSVSVKCCEKILAIASWLDILHTLIANPSPAVQHRGIVIILNMI 736 (810)
T ss_dssp HHHHHSSSSHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHCHHHHHHHHTSTTHHHHHHHHHTCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHCCCCHHHHHHHHHHHHHHH
Confidence 888886 8999999999965 4679999999999999 77788888875699999999999999999999999999999
Q ss_pred cCChHHHHHHHhCCchHHHHHHhhcC---CHHHHHHHHHHHHHhhhccCCcc
Q 036199 617 SQRDQYCKLVMNEGVIPSLVKISVYG---NDKAKVSALELRRLLRDVAYSVE 665 (710)
Q Consensus 617 ~~~~~~~~~v~~~G~v~~Lv~L~~~g---t~~~k~kA~~LL~~l~~~~~~~~ 665 (710)
..+.++...+.+.|++++|+.++... +.++.+.|...|+.+-++..-+.
T Consensus 737 ~~s~e~~~~l~e~G~i~~L~~LL~~~d~~~~~i~e~Al~aL~~ll~~g~~~~ 788 (810)
T 3now_A 737 NAGEEIAKKLFETDIMELLSGLGQLPDDTRAKAREVATQCLAAAERYRIIER 788 (810)
T ss_dssp TTCHHHHHHHHTSTHHHHHTTSCCCTTSTTHHHHHHHHHHHHHHHHHHTC--
T ss_pred hCCHHHHHHHHHCCCHHHHHHHHhCcccCcHHHHHHHHHHHHHHHhCCCccC
Confidence 98888999999999999999997654 78999999999998877665443
|
| >3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B | Back alignment and structure |
|---|
Probab=99.91 E-value=1.5e-23 Score=239.16 Aligned_cols=268 Identities=13% Similarity=0.110 Sum_probs=235.9
Q ss_pred hhhc-CCCHHHHHHHHHHHHHHHccCcccchhcccCCcHHHHHHHhhccccCCCHHHHHHHHHHHHHHhcc-CCCCCccc
Q 036199 388 SRLT-ELNWDCQCKVIEDYETRLEHDNQVSHSLSSTNFVEPLIRFLRDARDLHDSRAQRIGCRLLLAFVSK-NRSGIPYL 465 (710)
Q Consensus 388 ~~L~-s~~~e~q~~Al~~L~~Lak~~~~~r~~I~~~G~I~~LV~lL~s~~~~~d~~~q~~A~~~L~nL~~~-~~~k~~i~ 465 (710)
..|. +.+.+.|..|++.|..++..+++++..+++.|+||.|+.+|.+ ++..+++.|+.+|.|++.+ ..++..++
T Consensus 126 ~lL~~~~~~~~q~~Aa~aL~nia~~~~~~~~~vv~~Gaip~Lv~LL~s----~~~~v~e~A~~aL~nLa~~~~~~r~~i~ 201 (529)
T 3tpo_A 126 SFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLAS----PHAHISEQAVWALGNIAGAGSAFRDLVI 201 (529)
T ss_dssp HHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTC----SCHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcC----CCHHHHHHHHHHHHHHhccCHHHHHHHH
Confidence 4453 4468899999999999999999999999999999999999988 7899999999999999865 45677788
Q ss_pred cccchHHHHHHhccCcH-------HHHHHHHHHHhccCchhhHHHh-hhCcHHHHHHhhcCCCHHHHHHHHHHHHHhccC
Q 036199 466 NEDLFSLLASFLHSAAA-------TEETLAILVALSSYAYFISKIV-ASGALASILNMLDSPNGKFQELAIKILHNLSSD 537 (710)
Q Consensus 466 ~~gaI~~LV~lL~s~~~-------~~~Aa~~L~~Ls~~~~nk~~I~-~~GaI~~LV~LL~~~~~~~~~~A~~aL~nLs~~ 537 (710)
+.|+++.|+.+|..+.. ..+++++|.+++........+. ..|++|.|+.+|.+++++++.+|+++|.+|+.+
T Consensus 202 ~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~l~~~ 281 (529)
T 3tpo_A 202 KHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDG 281 (529)
T ss_dssp HTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHHHCCCTTCCCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHSS
T ss_pred HcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHHHHhcccchhhHHHHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhh
Confidence 99999999999986542 2589999999998776555554 478999999999999999999999999999987
Q ss_pred cccc-cccccccchhchHHhhcC--chHHHHHHHHHHHHhc-CcchHHHHHhhcCChHHHHHHhhcCCHHHHHHHHHHHH
Q 036199 538 VDIQ-SHIAPSEFLPKLVPFLKD--ATLAVSCLVILKNMCN-TEHARVCVVETSGCLPSVAELLEIGSEEDQEHAVAILL 613 (710)
Q Consensus 538 ~en~-~~iv~aG~V~~Lv~lL~~--~~~~~~al~iL~nLa~-~~e~r~~i~~~~g~I~~Lv~lL~~~s~~~ke~A~~aL~ 613 (710)
++++ ..++.+|+++.|+.+|.+ ..++..|+.+|+||+. +++.+..+.+ .|+++.|+.+|.++++..++.|+++|.
T Consensus 282 ~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~i~~-~g~l~~L~~LL~~~~~~i~~~a~~aL~ 360 (529)
T 3tpo_A 282 PNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVID-AGALAVFPSLLTNPKTNIQKEATWTMS 360 (529)
T ss_dssp CHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHH-TTGGGGHHHHTTCSSHHHHHHHHHHHH
T ss_pred hhhhHHHHHhccchHHHHHHhcCCChhHHHHHHHHHHHHHccchHHHHHHhh-cccHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 6554 556789999999999965 4678999999999987 4566777777 799999999999999999999999999
Q ss_pred HHhcCChHHHHHHHhCCchHHHHHHhhcCCHHHHHHHHHHHHHhhhc
Q 036199 614 CLCSQRDQYCKLVMNEGVIPSLVKISVYGNDKAKVSALELRRLLRDV 660 (710)
Q Consensus 614 ~Lc~~~~~~~~~v~~~G~v~~Lv~L~~~gt~~~k~kA~~LL~~l~~~ 660 (710)
+||.++......+.+.|++|+|+.++.+++.++++.|.+.|..+...
T Consensus 361 nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nl~~~ 407 (529)
T 3tpo_A 361 NITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKAAAWAITNYTSG 407 (529)
T ss_dssp HHHTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH
T ss_pred HHhcccHHHHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHcC
Confidence 99999988999999999999999999999999999999999877643
|
| >3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ... | Back alignment and structure |
|---|
Probab=99.91 E-value=2e-23 Score=237.24 Aligned_cols=270 Identities=15% Similarity=0.196 Sum_probs=232.1
Q ss_pred hhhcCCCHHHHHHHHHHHHHHHc-cCcccchhcccCCcHHHHHHHhhccccCCCHHHHHHHHHHHHHHhc-cCCCCCccc
Q 036199 388 SRLTELNWDCQCKVIEDYETRLE-HDNQVSHSLSSTNFVEPLIRFLRDARDLHDSRAQRIGCRLLLAFVS-KNRSGIPYL 465 (710)
Q Consensus 388 ~~L~s~~~e~q~~Al~~L~~Lak-~~~~~r~~I~~~G~I~~LV~lL~s~~~~~d~~~q~~A~~~L~nL~~-~~~~k~~i~ 465 (710)
..|.+++.+.|.+|+..+|.++. +.......|++.|+||.||++|++. .++.+|..|+++|.|+++ +..++..++
T Consensus 64 ~~l~s~d~~~q~~a~~~~rklls~e~~ppi~~ii~~G~ip~LV~lL~~~---~~~~lq~~Aa~aL~nias~~~e~~~~vv 140 (510)
T 3ul1_B 64 KGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKT---DCSPIQFESAWALTNIASGTSEQTKAVV 140 (510)
T ss_dssp HHHTSSCHHHHHHHHHHHHHHHTCSSCCCHHHHHHTTHHHHHHHHTTCT---TCHHHHHHHHHHHHHHHTSCHHHHHHHH
T ss_pred HHhcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHCCC---CCHHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 67889999999999999997664 3333456788999999999999762 568999999999999965 445677788
Q ss_pred cccchHHHHHHhccCcH--HHHHHHHHHHhccC-chhhHHHhhhCcHHHHHHhhcCCC-----HHHHHHHHHHHHHhccC
Q 036199 466 NEDLFSLLASFLHSAAA--TEETLAILVALSSY-AYFISKIVASGALASILNMLDSPN-----GKFQELAIKILHNLSSD 537 (710)
Q Consensus 466 ~~gaI~~LV~lL~s~~~--~~~Aa~~L~~Ls~~-~~nk~~I~~~GaI~~LV~LL~~~~-----~~~~~~A~~aL~nLs~~ 537 (710)
+.|+||.|+.+|.+++. ++.|+++|.||+.+ +.+|..+.+.|++++|+.+|...+ ......++++|.|++.+
T Consensus 141 ~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~ 220 (510)
T 3ul1_B 141 DGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRN 220 (510)
T ss_dssp HTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHHCC
T ss_pred HCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHHHhhc
Confidence 99999999999999876 47999999999965 678889999999999999997654 45788999999999998
Q ss_pred cccccccc-cccchhchHHhhcC--chHHHHHHHHHHHHhcCcchHHHHHhhcCChHHHHHHhhcCCHHHHHHHHHHHHH
Q 036199 538 VDIQSHIA-PSEFLPKLVPFLKD--ATLAVSCLVILKNMCNTEHARVCVVETSGCLPSVAELLEIGSEEDQEHAVAILLC 614 (710)
Q Consensus 538 ~en~~~iv-~aG~V~~Lv~lL~~--~~~~~~al~iL~nLa~~~e~r~~i~~~~g~I~~Lv~lL~~~s~~~ke~A~~aL~~ 614 (710)
..+...+. ..|++|.|+.+|.+ +++...|+++|.+|+.+...+..++...|+++.|+.+|.++++..+..|+.+|.+
T Consensus 221 ~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~al~aL~n 300 (510)
T 3ul1_B 221 KNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGN 300 (510)
T ss_dssp CSSCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHH
T ss_pred ccchhHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHHHHHhhchhhhHHHHHhcccchhhhhhhcCCChhhhhHHHHHHHH
Confidence 77766654 47899999999954 5678999999999999766654444338999999999999999999999999999
Q ss_pred HhcCChHHHHHHHhCCchHHHHHHhhcCCHHHHHHHHHHHHHhhhc
Q 036199 615 LCSQRDQYCKLVMNEGVIPSLVKISVYGNDKAKVSALELRRLLRDV 660 (710)
Q Consensus 615 Lc~~~~~~~~~v~~~G~v~~Lv~L~~~gt~~~k~kA~~LL~~l~~~ 660 (710)
++..++.....+.+.|+++.|+.++.++++.+++.|.+.|..+...
T Consensus 301 l~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~v~~~A~~aL~nl~a~ 346 (510)
T 3ul1_B 301 IVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAG 346 (510)
T ss_dssp HTTSCHHHHHHHHHTTGGGGCC-CTTCSSHHHHHHHHHHHHHHTTS
T ss_pred hhcCCHHHHHHHhhccchHHHHHHhcCCCHHHHHHHHHHHHHHHcC
Confidence 9999988999999999999999999999999999999999988643
|
| >3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ... | Back alignment and structure |
|---|
Probab=99.90 E-value=1.2e-23 Score=238.85 Aligned_cols=268 Identities=13% Similarity=0.109 Sum_probs=234.7
Q ss_pred hhhc-CCCHHHHHHHHHHHHHHHccCcccchhcccCCcHHHHHHHhhccccCCCHHHHHHHHHHHHHHhccC-CCCCccc
Q 036199 388 SRLT-ELNWDCQCKVIEDYETRLEHDNQVSHSLSSTNFVEPLIRFLRDARDLHDSRAQRIGCRLLLAFVSKN-RSGIPYL 465 (710)
Q Consensus 388 ~~L~-s~~~e~q~~Al~~L~~Lak~~~~~r~~I~~~G~I~~LV~lL~s~~~~~d~~~q~~A~~~L~nL~~~~-~~k~~i~ 465 (710)
..|. +.+.+.|..|++.|..++..+++++..+++.|+||.|+.+|.+ ++..+++.|+.+|.|++.+. ..+..+.
T Consensus 107 ~lL~~~~~~~lq~~Aa~aL~nias~~~e~~~~vv~~GaIp~Lv~lL~s----~~~~v~e~A~~aL~nLa~d~~~~r~~v~ 182 (510)
T 3ul1_B 107 SFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLAS----PHAHISEQAVWALGNIAGDGSAFRDLVI 182 (510)
T ss_dssp HHTTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTC----SCHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHcC----CCHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 4454 3468899999999999999999999999999999999999987 78999999999999998754 4567778
Q ss_pred cccchHHHHHHhccCcH-------HHHHHHHHHHhccCchhhHHHh-hhCcHHHHHHhhcCCCHHHHHHHHHHHHHhccC
Q 036199 466 NEDLFSLLASFLHSAAA-------TEETLAILVALSSYAYFISKIV-ASGALASILNMLDSPNGKFQELAIKILHNLSSD 537 (710)
Q Consensus 466 ~~gaI~~LV~lL~s~~~-------~~~Aa~~L~~Ls~~~~nk~~I~-~~GaI~~LV~LL~~~~~~~~~~A~~aL~nLs~~ 537 (710)
+.|+++.|+.+|.+++. ..+++++|.+++........+. ..|++|.|+.+|.+++++++..|+++|.+|+.+
T Consensus 183 ~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~A~~aL~~L~~~ 262 (510)
T 3ul1_B 183 KHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDG 262 (510)
T ss_dssp HTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHHCCCSSCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSS
T ss_pred HcCChHHHHHHHHhccchhhhHHHHHHHHHHHHHHhhcccchhHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHHHHHhhc
Confidence 99999999999987642 2589999999998766655554 478999999999999999999999999999987
Q ss_pred cccc-cccccccchhchHHhhcC--chHHHHHHHHHHHHhc-CcchHHHHHhhcCChHHHHHHhhcCCHHHHHHHHHHHH
Q 036199 538 VDIQ-SHIAPSEFLPKLVPFLKD--ATLAVSCLVILKNMCN-TEHARVCVVETSGCLPSVAELLEIGSEEDQEHAVAILL 613 (710)
Q Consensus 538 ~en~-~~iv~aG~V~~Lv~lL~~--~~~~~~al~iL~nLa~-~~e~r~~i~~~~g~I~~Lv~lL~~~s~~~ke~A~~aL~ 613 (710)
++++ ..+++.|+++.|+.+|.+ ..++..++.+|+||+. +++.+..+.+ .|+++.|+.+|.++++..++.|+++|.
T Consensus 263 ~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~al~aL~nl~~~~~~~~~~i~~-~g~l~~L~~LL~~~~~~v~~~A~~aL~ 341 (510)
T 3ul1_B 263 PNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVID-AGALAVFPSLLTNPKTNIQKEATWTMS 341 (510)
T ss_dssp CHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHH-TTGGGGCC-CTTCSSHHHHHHHHHHHH
T ss_pred hhhhHHHHHhcccchhhhhhhcCCChhhhhHHHHHHHHhhcCCHHHHHHHhh-ccchHHHHHHhcCCCHHHHHHHHHHHH
Confidence 6555 556789999999999965 4678999999999987 4566677777 799999999999999999999999999
Q ss_pred HHhcCChHHHHHHHhCCchHHHHHHhhcCCHHHHHHHHHHHHHhhhc
Q 036199 614 CLCSQRDQYCKLVMNEGVIPSLVKISVYGNDKAKVSALELRRLLRDV 660 (710)
Q Consensus 614 ~Lc~~~~~~~~~v~~~G~v~~Lv~L~~~gt~~~k~kA~~LL~~l~~~ 660 (710)
+|+.++..++..+.+.|++|.|+.++.+++.++|+.|.+.|..+...
T Consensus 342 nl~a~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~Aa~aL~Nl~~~ 388 (510)
T 3ul1_B 342 NITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSG 388 (510)
T ss_dssp HHTTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH
T ss_pred HHHcCcHHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcc
Confidence 99999988999999999999999999999999999999999877653
|
| >4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} | Back alignment and structure |
|---|
Probab=99.90 E-value=4.1e-23 Score=211.10 Aligned_cols=233 Identities=22% Similarity=0.291 Sum_probs=209.4
Q ss_pred CCcHHHHHHHhhccccCCCHHHHHHHHHHHHHHhc-cCCCCCccccccchHHHHHHhccCcH--HHHHHHHHHHhcc-Cc
Q 036199 422 TNFVEPLIRFLRDARDLHDSRAQRIGCRLLLAFVS-KNRSGIPYLNEDLFSLLASFLHSAAA--TEETLAILVALSS-YA 497 (710)
Q Consensus 422 ~G~I~~LV~lL~s~~~~~d~~~q~~A~~~L~nL~~-~~~~k~~i~~~gaI~~LV~lL~s~~~--~~~Aa~~L~~Ls~-~~ 497 (710)
....+.++..|.+ +|+++|..|+.+|.++.. ++.++..+++.|+++.|+.+|.+++. +..|+++|.+|+. .+
T Consensus 11 ~~~~~~~~~~L~s----~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~ 86 (252)
T 4db8_A 11 GSELPQMTQQLNS----DDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGN 86 (252)
T ss_dssp TCSHHHHHHHHHS----SCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCH
T ss_pred cchHHHHHHHHcC----CCHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCH
Confidence 4568999999988 789999999999988643 45556667789999999999998875 3699999999996 78
Q ss_pred hhhHHHhhhCcHHHHHHhhcCCCHHHHHHHHHHHHHhccCcccc-cccccccchhchHHhhcC--chHHHHHHHHHHHHh
Q 036199 498 YFISKIVASGALASILNMLDSPNGKFQELAIKILHNLSSDVDIQ-SHIAPSEFLPKLVPFLKD--ATLAVSCLVILKNMC 574 (710)
Q Consensus 498 ~nk~~I~~~GaI~~LV~LL~~~~~~~~~~A~~aL~nLs~~~en~-~~iv~aG~V~~Lv~lL~~--~~~~~~al~iL~nLa 574 (710)
+++..+.+.|+++.|+.+|.++++.++..|+++|.||+.+++++ ..+++.|+++.|+++|.+ ..++..|+.+|.+|+
T Consensus 87 ~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~ 166 (252)
T 4db8_A 87 EQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIA 166 (252)
T ss_dssp HHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999988 889999999999999965 467999999999999
Q ss_pred cC-cchHHHHHhhcCChHHHHHHhhcCCHHHHHHHHHHHHHHhcCChHHHHHHHhCCchHHHHHHhhcCCHHHHHHHHHH
Q 036199 575 NT-EHARVCVVETSGCLPSVAELLEIGSEEDQEHAVAILLCLCSQRDQYCKLVMNEGVIPSLVKISVYGNDKAKVSALEL 653 (710)
Q Consensus 575 ~~-~e~r~~i~~~~g~I~~Lv~lL~~~s~~~ke~A~~aL~~Lc~~~~~~~~~v~~~G~v~~Lv~L~~~gt~~~k~kA~~L 653 (710)
.. ++.+..+.+ .|+++.|+.+|..+++..++.|+++|.+||..++..+..+.+.|+++.|+.++.++++++++.|.++
T Consensus 167 ~~~~~~~~~~~~-~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~A~~~ 245 (252)
T 4db8_A 167 SGGNEQIQAVID-AGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEA 245 (252)
T ss_dssp TSCHHHHHHHHH-TTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHTTTTCSSSHHHHTHHHH
T ss_pred cCChHHHHHHHH-CCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhCCCCHHHHHHHHHH
Confidence 84 566667777 7999999999999999999999999999999888889999999999999999999999999999999
Q ss_pred HHHhhh
Q 036199 654 RRLLRD 659 (710)
Q Consensus 654 L~~l~~ 659 (710)
|..|..
T Consensus 246 L~~l~~ 251 (252)
T 4db8_A 246 LEKLQS 251 (252)
T ss_dssp HHTTC-
T ss_pred HHHHhc
Confidence 987754
|
| >3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.90 E-value=4.9e-24 Score=216.70 Aligned_cols=191 Identities=16% Similarity=0.132 Sum_probs=169.4
Q ss_pred CcHHHHHHHhhccccCCCH--HHHHHHHHHHHHHh-ccCCCCCccccccchHHHHHHhccCcH--HHHHHHHHHHhcc-C
Q 036199 423 NFVEPLIRFLRDARDLHDS--RAQRIGCRLLLAFV-SKNRSGIPYLNEDLFSLLASFLHSAAA--TEETLAILVALSS-Y 496 (710)
Q Consensus 423 G~I~~LV~lL~s~~~~~d~--~~q~~A~~~L~nL~-~~~~~k~~i~~~gaI~~LV~lL~s~~~--~~~Aa~~L~~Ls~-~ 496 (710)
-.++.||++|.+ +|. ++|..|+..|.+++ .++.+|..+.+.|+||.||.+|++++. ++.|+++|.||+. +
T Consensus 8 ~~i~~lV~lL~s----~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~ 83 (233)
T 3tt9_A 8 MTLERAVSMLEA----DHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFED 83 (233)
T ss_dssp CCHHHHHHTCCS----SCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTC
T ss_pred ccHHHHHHHhCC----CCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCC
Confidence 368999999988 455 89999999999996 466778888899999999999999875 4799999999996 6
Q ss_pred chhhHHHhhhCcHHHHHHhhc-CCCHHHHHHHHHHHHHhccCcccccccccccchhchHHhhc-----------------
Q 036199 497 AYFISKIVASGALASILNMLD-SPNGKFQELAIKILHNLSSDVDIQSHIAPSEFLPKLVPFLK----------------- 558 (710)
Q Consensus 497 ~~nk~~I~~~GaI~~LV~LL~-~~~~~~~~~A~~aL~nLs~~~en~~~iv~aG~V~~Lv~lL~----------------- 558 (710)
++||..|++.|+||+||++|. +++.++++.|+.+|||||..++||..+++ ++||+|+.++.
T Consensus 84 ~~nk~~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~~~k~~i~~-~~i~~Lv~ll~~p~sG~~~~~~~~~~~~ 162 (233)
T 3tt9_A 84 NDNKLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKLKNLMIT-EALLTLTENIIIPFSGWPEGDYPKANGL 162 (233)
T ss_dssp HHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSGGGHHHHHH-HHHHHHCCCCCHHHHCCCGGGCCCCCTT
T ss_pred HHHHHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcChhhHHHHHh-ccHHHHHHHHhccccCCccccccccccc
Confidence 899999999999999999997 68999999999999999999999999987 57999998762
Q ss_pred -CchHHHHHHHHHHHHhc-CcchHHHHHhhcCChHHHHHHhhcC------CHHHHHHHHHHHHHHhcC
Q 036199 559 -DATLAVSCLVILKNMCN-TEHARVCVVETSGCLPSVAELLEIG------SEEDQEHAVAILLCLCSQ 618 (710)
Q Consensus 559 -~~~~~~~al~iL~nLa~-~~e~r~~i~~~~g~I~~Lv~lL~~~------s~~~ke~A~~aL~~Lc~~ 618 (710)
+.++.+.|.++|+||+. ++++|..|.+..|+|+.||.+++.+ +.+.+|+|+.+|++||.+
T Consensus 163 ~~~~v~~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs~~ 230 (233)
T 3tt9_A 163 LDFDIFYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLSYQ 230 (233)
T ss_dssp CCHHHHHHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCCC
T ss_pred chHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHhh
Confidence 23678999999999998 5799999998678899999999863 668899999999999975
|
| >3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B | Back alignment and structure |
|---|
Probab=99.90 E-value=2.1e-22 Score=229.76 Aligned_cols=269 Identities=15% Similarity=0.202 Sum_probs=232.5
Q ss_pred hhhcCCCHHHHHHHHHHHHHHHc-cCcccchhcccCCcHHHHHHHhhccccCCCHHHHHHHHHHHHHHhccC-CCCCccc
Q 036199 388 SRLTELNWDCQCKVIEDYETRLE-HDNQVSHSLSSTNFVEPLIRFLRDARDLHDSRAQRIGCRLLLAFVSKN-RSGIPYL 465 (710)
Q Consensus 388 ~~L~s~~~e~q~~Al~~L~~Lak-~~~~~r~~I~~~G~I~~LV~lL~s~~~~~d~~~q~~A~~~L~nL~~~~-~~k~~i~ 465 (710)
..+.+++.+.|..|+..+|.+.. +.......+++.|+||.||++|... .++.+|..|+.+|.|++.+. .++..++
T Consensus 83 ~~l~s~d~~~q~~a~~~~rklLs~~~~~~i~~ii~~G~ip~Lv~lL~~~---~~~~~q~~Aa~aL~nia~~~~~~~~~vv 159 (529)
T 3tpo_A 83 KGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKT---DCSPIQFESAWALTNIASGTSEQTKAVV 159 (529)
T ss_dssp HHHTSSCHHHHHHHHHHHHHHHTSSSCCCHHHHHHTTHHHHHHHHHTCT---TCHHHHHHHHHHHHHHHTSCHHHHHHHH
T ss_pred HHhcCCCHHHHHHHHHHHHHHHcCCCCchHHHHHHCCCHHHHHHHHcCC---CCHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 67788899999999999997664 3334456788999999999999752 56899999999999997644 4556778
Q ss_pred cccchHHHHHHhccCcH--HHHHHHHHHHhcc-CchhhHHHhhhCcHHHHHHhhcCCC-----HHHHHHHHHHHHHhccC
Q 036199 466 NEDLFSLLASFLHSAAA--TEETLAILVALSS-YAYFISKIVASGALASILNMLDSPN-----GKFQELAIKILHNLSSD 537 (710)
Q Consensus 466 ~~gaI~~LV~lL~s~~~--~~~Aa~~L~~Ls~-~~~nk~~I~~~GaI~~LV~LL~~~~-----~~~~~~A~~aL~nLs~~ 537 (710)
+.|+||.|+.+|.+++. ++.|+++|.||+. .++++..+.+.|++++|+.+|...+ ......++++|.|++.+
T Consensus 160 ~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~ 239 (529)
T 3tpo_A 160 DGGAIPAFISLLASPHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRN 239 (529)
T ss_dssp HTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHHHCC
T ss_pred HCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHHHHhc
Confidence 99999999999999886 3799999999996 4689999999999999999997654 45688999999999998
Q ss_pred cccccccc-cccchhchHHhhcC--chHHHHHHHHHHHHhcCcchHH-HHHhhcCChHHHHHHhhcCCHHHHHHHHHHHH
Q 036199 538 VDIQSHIA-PSEFLPKLVPFLKD--ATLAVSCLVILKNMCNTEHARV-CVVETSGCLPSVAELLEIGSEEDQEHAVAILL 613 (710)
Q Consensus 538 ~en~~~iv-~aG~V~~Lv~lL~~--~~~~~~al~iL~nLa~~~e~r~-~i~~~~g~I~~Lv~lL~~~s~~~ke~A~~aL~ 613 (710)
..+...+. ..|++|.|+.+|.+ +++...|+++|.+|+.+.+.+. .+.. .|+++.|+.+|.++++..+..|+.+|.
T Consensus 240 ~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~l~~~~~~~~~~v~~-~g~i~~Lv~lL~~~~~~v~~~a~~aL~ 318 (529)
T 3tpo_A 240 KNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVK-KGVVPQLVKLLGATELPIVTPALRAIG 318 (529)
T ss_dssp CTTCCCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHT-TTCHHHHHHHHTCSCHHHHHHHHHHHH
T ss_pred ccchhhHHHHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhhhhhhHHHHHh-ccchHHHHHHhcCCChhHHHHHHHHHH
Confidence 77766554 47899999999954 5678999999999999766554 4555 899999999999999999999999999
Q ss_pred HHhcCChHHHHHHHhCCchHHHHHHhhcCCHHHHHHHHHHHHHhhhc
Q 036199 614 CLCSQRDQYCKLVMNEGVIPSLVKISVYGNDKAKVSALELRRLLRDV 660 (710)
Q Consensus 614 ~Lc~~~~~~~~~v~~~G~v~~Lv~L~~~gt~~~k~kA~~LL~~l~~~ 660 (710)
+++.+++.....+.+.|+++.|+.++.++++.+++.|.+.|..+...
T Consensus 319 nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~i~~~a~~aL~nl~~~ 365 (529)
T 3tpo_A 319 NIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAG 365 (529)
T ss_dssp HHTTSCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHHHHHHHTS
T ss_pred HHHccchHHHHHHhhcccHHHHHHHHcCCCHHHHHHHHHHHHHHhcc
Confidence 99999988999999999999999999999999999999999988653
|
| >4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A | Back alignment and structure |
|---|
Probab=99.89 E-value=8.4e-22 Score=223.87 Aligned_cols=268 Identities=15% Similarity=0.163 Sum_probs=235.9
Q ss_pred hhhcCCCHHHHHHHHHHHHHHHccCc-ccchhcccCCcHHHHHHHhhccccCCCHHHHHHHHHHHHHHhcc-CCCCCccc
Q 036199 388 SRLTELNWDCQCKVIEDYETRLEHDN-QVSHSLSSTNFVEPLIRFLRDARDLHDSRAQRIGCRLLLAFVSK-NRSGIPYL 465 (710)
Q Consensus 388 ~~L~s~~~e~q~~Al~~L~~Lak~~~-~~r~~I~~~G~I~~LV~lL~s~~~~~d~~~q~~A~~~L~nL~~~-~~~k~~i~ 465 (710)
..|.+++++.|..|+..|+.++.... .....+...|+++.|+.+|.+. .++.+|..|+.+|.+++.+ ..++..++
T Consensus 81 ~~L~s~~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~---~~~~v~~~A~~~L~~l~~~~~~~~~~~~ 157 (528)
T 4b8j_A 81 GGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTRE---DFPQLQFEAAWALTNIASGTSENTKVVI 157 (528)
T ss_dssp HHHTSSCHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCT---TCHHHHHHHHHHHHHHHTSCHHHHHHHH
T ss_pred HHHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCC---CCHHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 67788899999999999999877654 6677888999999999999872 2389999999999999774 45566777
Q ss_pred cccchHHHHHHhccCcH--HHHHHHHHHHhccC-chhhHHHhhhCcHHHHHHhh-cCCCHHHHHHHHHHHHHhccCcccc
Q 036199 466 NEDLFSLLASFLHSAAA--TEETLAILVALSSY-AYFISKIVASGALASILNML-DSPNGKFQELAIKILHNLSSDVDIQ 541 (710)
Q Consensus 466 ~~gaI~~LV~lL~s~~~--~~~Aa~~L~~Ls~~-~~nk~~I~~~GaI~~LV~LL-~~~~~~~~~~A~~aL~nLs~~~en~ 541 (710)
+.|+++.|+.+|.+++. ++.|+++|.+|+.. +.++..+...|++++|+.+| .+.++.++..|+++|.||+.+..+.
T Consensus 158 ~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~~~~~ 237 (528)
T 4b8j_A 158 DHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQP 237 (528)
T ss_dssp HTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCSSSCC
T ss_pred hCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCC
Confidence 88999999999998775 37999999999955 66888999999999999999 6778999999999999999886666
Q ss_pred cccccccchhchHHhhcC--chHHHHHHHHHHHHhcCcchH-HHHHhhcCChHHHHHHhhcCCHHHHHHHHHHHHHHhcC
Q 036199 542 SHIAPSEFLPKLVPFLKD--ATLAVSCLVILKNMCNTEHAR-VCVVETSGCLPSVAELLEIGSEEDQEHAVAILLCLCSQ 618 (710)
Q Consensus 542 ~~iv~aG~V~~Lv~lL~~--~~~~~~al~iL~nLa~~~e~r-~~i~~~~g~I~~Lv~lL~~~s~~~ke~A~~aL~~Lc~~ 618 (710)
...+..|+++.|+.+|.+ +.+...|+.+|.+|+.....+ ..+.. .|+++.|+.+|.++++..++.|+++|.+|+.+
T Consensus 238 ~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~-~g~v~~Lv~lL~~~~~~v~~~a~~~L~nl~~~ 316 (528)
T 4b8j_A 238 SFEQTRPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIE-AGVCPRLVELLLHPSPSVLIPALRTVGNIVTG 316 (528)
T ss_dssp CHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSSCHHHHHHHHH-TTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTS
T ss_pred cHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHH-cCHHHHHHHHHcCCChhHHHHHHHHHHHHHcC
Confidence 666779999999999954 568999999999999976665 45556 79999999999999999999999999999999
Q ss_pred ChHHHHHHHhCCchHHHHHHhhcC-CHHHHHHHHHHHHHhhh
Q 036199 619 RDQYCKLVMNEGVIPSLVKISVYG-NDKAKVSALELRRLLRD 659 (710)
Q Consensus 619 ~~~~~~~v~~~G~v~~Lv~L~~~g-t~~~k~kA~~LL~~l~~ 659 (710)
++...+.+++.|+++.|+.++.++ ++.+++.|.++|..|..
T Consensus 317 ~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~ 358 (528)
T 4b8j_A 317 DDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITA 358 (528)
T ss_dssp CHHHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHC
Confidence 888889999999999999999999 99999999999998875
|
| >4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} | Back alignment and structure |
|---|
Probab=99.88 E-value=7.6e-23 Score=209.12 Aligned_cols=226 Identities=20% Similarity=0.258 Sum_probs=201.7
Q ss_pred hhhcCCCHHHHHHHHHHHHHHHccCcccchhcccCCcHHHHHHHhhccccCCCHHHHHHHHHHHHHHhc-cCCCCCcccc
Q 036199 388 SRLTELNWDCQCKVIEDYETRLEHDNQVSHSLSSTNFVEPLIRFLRDARDLHDSRAQRIGCRLLLAFVS-KNRSGIPYLN 466 (710)
Q Consensus 388 ~~L~s~~~e~q~~Al~~L~~Lak~~~~~r~~I~~~G~I~~LV~lL~s~~~~~d~~~q~~A~~~L~nL~~-~~~~k~~i~~ 466 (710)
..|.+++.+.|..|++.|+.++..+++++..+.+.|+++.|+.+|.+ .+..++..|+.+|.+++. +..++..+++
T Consensus 19 ~~L~s~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~----~~~~v~~~a~~~L~~l~~~~~~~~~~i~~ 94 (252)
T 4db8_A 19 QQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSS----PNEQILQEALWALSNIASGGNEQIQAVID 94 (252)
T ss_dssp HHHHSSCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGC----SCHHHHHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred HHHcCCCHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcC----CCHHHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 67888999999999999987666677888899999999999999987 679999999999999976 5566777788
Q ss_pred ccchHHHHHHhccCcH--HHHHHHHHHHhccCchhh-HHHhhhCcHHHHHHhhcCCCHHHHHHHHHHHHHhccC-ccccc
Q 036199 467 EDLFSLLASFLHSAAA--TEETLAILVALSSYAYFI-SKIVASGALASILNMLDSPNGKFQELAIKILHNLSSD-VDIQS 542 (710)
Q Consensus 467 ~gaI~~LV~lL~s~~~--~~~Aa~~L~~Ls~~~~nk-~~I~~~GaI~~LV~LL~~~~~~~~~~A~~aL~nLs~~-~en~~ 542 (710)
.|+++.|+.+|++++. ++.|+++|.+|+..+.++ ..+.+.|++|.|+++|.++++.++..|+++|.||+.. ++++.
T Consensus 95 ~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~ 174 (252)
T 4db8_A 95 AGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQ 174 (252)
T ss_dssp TTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred cCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHH
Confidence 9999999999999875 379999999999999988 8888999999999999999999999999999999974 56777
Q ss_pred ccccccchhchHHhhcC--chHHHHHHHHHHHHhc-CcchHHHHHhhcCChHHHHHHhhcCCHHHHHHHHHHHHHHhcC
Q 036199 543 HIAPSEFLPKLVPFLKD--ATLAVSCLVILKNMCN-TEHARVCVVETSGCLPSVAELLEIGSEEDQEHAVAILLCLCSQ 618 (710)
Q Consensus 543 ~iv~aG~V~~Lv~lL~~--~~~~~~al~iL~nLa~-~~e~r~~i~~~~g~I~~Lv~lL~~~s~~~ke~A~~aL~~Lc~~ 618 (710)
.+++.|+++.|+.+|.+ +.++..|+.+|.+|+. +++.+..+.+ .|+++.|+.++.++++..++.|+++|.+|+.+
T Consensus 175 ~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~-~g~i~~L~~ll~~~~~~v~~~A~~~L~~l~~~ 252 (252)
T 4db8_A 175 AVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKE-AGALEKLEQLQSHENEKIQKEAQEALEKLQSH 252 (252)
T ss_dssp HHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCHHHHHHHHH-TTHHHHHHTTTTCSSSHHHHTHHHHHHTTC--
T ss_pred HHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHH-CCcHHHHHHHhCCCCHHHHHHHHHHHHHHhcC
Confidence 88899999999999965 4679999999999996 5677778887 79999999999999999999999999999853
|
| >4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A | Back alignment and structure |
|---|
Probab=99.88 E-value=1.3e-21 Score=222.38 Aligned_cols=268 Identities=14% Similarity=0.117 Sum_probs=235.9
Q ss_pred hhhcCCC-HHHHHHHHHHHHHHHccCcccchhcccCCcHHHHHHHhhccccCCCHHHHHHHHHHHHHHhccC-CCCCccc
Q 036199 388 SRLTELN-WDCQCKVIEDYETRLEHDNQVSHSLSSTNFVEPLIRFLRDARDLHDSRAQRIGCRLLLAFVSKN-RSGIPYL 465 (710)
Q Consensus 388 ~~L~s~~-~e~q~~Al~~L~~Lak~~~~~r~~I~~~G~I~~LV~lL~s~~~~~d~~~q~~A~~~L~nL~~~~-~~k~~i~ 465 (710)
..|.+.+ ++.|..|++.|..++.++++++..+.+.|+++.|+.+|.+ .+..+++.|+.+|.+++.+. .++..+.
T Consensus 124 ~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~----~~~~v~~~a~~aL~~l~~~~~~~~~~i~ 199 (528)
T 4b8j_A 124 QFLTREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLGS----SSDDVREQAVWALGNVAGDSPKCRDLVL 199 (528)
T ss_dssp HHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTC----SCHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhCCcHHHHHHHhcC----CCHHHHHHHHHHHHHHhCCChhhHHHHH
Confidence 5566665 8999999999999999989999999999999999999987 68999999999999997653 4466677
Q ss_pred cccchHHHHHHhc-cCcH--HHHHHHHHHHhccCchhhHHHhhhCcHHHHHHhhcCCCHHHHHHHHHHHHHhccCcccc-
Q 036199 466 NEDLFSLLASFLH-SAAA--TEETLAILVALSSYAYFISKIVASGALASILNMLDSPNGKFQELAIKILHNLSSDVDIQ- 541 (710)
Q Consensus 466 ~~gaI~~LV~lL~-s~~~--~~~Aa~~L~~Ls~~~~nk~~I~~~GaI~~LV~LL~~~~~~~~~~A~~aL~nLs~~~en~- 541 (710)
..|+++.|+.+|. +.+. ...|+++|.+|+....+.......|++|.|+.+|.++++.++..|+++|.+|+...++.
T Consensus 200 ~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~ 279 (528)
T 4b8j_A 200 ANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQPSFEQTRPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKI 279 (528)
T ss_dssp HTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCSSSCCCHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSSCHHHH
T ss_pred HCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHH
Confidence 8899999999994 4443 36999999999987655556667999999999999999999999999999999876655
Q ss_pred cccccccchhchHHhhcC--chHHHHHHHHHHHHhc-CcchHHHHHhhcCChHHHHHHhhcC-CHHHHHHHHHHHHHHhc
Q 036199 542 SHIAPSEFLPKLVPFLKD--ATLAVSCLVILKNMCN-TEHARVCVVETSGCLPSVAELLEIG-SEEDQEHAVAILLCLCS 617 (710)
Q Consensus 542 ~~iv~aG~V~~Lv~lL~~--~~~~~~al~iL~nLa~-~~e~r~~i~~~~g~I~~Lv~lL~~~-s~~~ke~A~~aL~~Lc~ 617 (710)
..+++.|+++.|+.+|.+ +.++..|+.+|+||+. .+.....+.+ .|+++.|+.+|.++ ++..++.|+++|.+|+.
T Consensus 280 ~~~~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~-~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~ 358 (528)
T 4b8j_A 280 QAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIVTGDDAQTQCIID-HQALPCLLSLLTQNLKKSIKKEACWTISNITA 358 (528)
T ss_dssp HHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHT-TTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHT
T ss_pred HHHHHcCHHHHHHHHHcCCChhHHHHHHHHHHHHHcCCHHHHHHHHH-hhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHC
Confidence 567789999999999965 4689999999999998 5666677777 79999999999998 99999999999999999
Q ss_pred CChHHHHHHHhCCchHHHHHHhhcCCHHHHHHHHHHHHHhhhc
Q 036199 618 QRDQYCKLVMNEGVIPSLVKISVYGNDKAKVSALELRRLLRDV 660 (710)
Q Consensus 618 ~~~~~~~~v~~~G~v~~Lv~L~~~gt~~~k~kA~~LL~~l~~~ 660 (710)
.++.....+.+.|++|.|+.++.++++.+++.|.++|..+...
T Consensus 359 ~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~aL~nl~~~ 401 (528)
T 4b8j_A 359 GNKDQIQAVINAGIIGPLVNLLQTAEFDIKKEAAWAISNATSG 401 (528)
T ss_dssp SCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcC
Confidence 8888888999999999999999999999999999999988765
|
| >4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene} | Back alignment and structure |
|---|
Probab=99.87 E-value=7.5e-22 Score=200.59 Aligned_cols=227 Identities=20% Similarity=0.231 Sum_probs=205.1
Q ss_pred hhhcCCCHHHHHHHHHHHHHHHccCcccchhcccCCcHHHHHHHhhccccCCCHHHHHHHHHHHHHHhcc-CCCCCcccc
Q 036199 388 SRLTELNWDCQCKVIEDYETRLEHDNQVSHSLSSTNFVEPLIRFLRDARDLHDSRAQRIGCRLLLAFVSK-NRSGIPYLN 466 (710)
Q Consensus 388 ~~L~s~~~e~q~~Al~~L~~Lak~~~~~r~~I~~~G~I~~LV~lL~s~~~~~d~~~q~~A~~~L~nL~~~-~~~k~~i~~ 466 (710)
..|.+.+.+.|..|++.|..++..+++++..+.+.|+++.|+.+|.+ .+..++..|+.+|.+++.+ ..++..+.+
T Consensus 9 ~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~----~~~~v~~~a~~~L~~l~~~~~~~~~~~~~ 84 (252)
T 4hxt_A 9 KLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTS----TDSEVQKEAARALANIASGPDEAIKAIVD 84 (252)
T ss_dssp HHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTC----SCHHHHHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred HHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhC----CCHHHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 56777889999999999999999998899999999999999999987 6799999999999999765 566777788
Q ss_pred ccchHHHHHHhccCcHH--HHHHHHHHHhc-cCchhhHHHhhhCcHHHHHHhhcCCCHHHHHHHHHHHHHhccC-ccccc
Q 036199 467 EDLFSLLASFLHSAAAT--EETLAILVALS-SYAYFISKIVASGALASILNMLDSPNGKFQELAIKILHNLSSD-VDIQS 542 (710)
Q Consensus 467 ~gaI~~LV~lL~s~~~~--~~Aa~~L~~Ls-~~~~nk~~I~~~GaI~~LV~LL~~~~~~~~~~A~~aL~nLs~~-~en~~ 542 (710)
.|+++.|+.+|++++.. ..|+++|.+|+ ..++++..+.+.|+++.|+++|.++++.++..|+++|.||+.. ++++.
T Consensus 85 ~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~ 164 (252)
T 4hxt_A 85 AGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIK 164 (252)
T ss_dssp TTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred CCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHH
Confidence 99999999999987753 69999999999 6788999999999999999999999999999999999999984 55567
Q ss_pred ccccccchhchHHhhcC--chHHHHHHHHHHHHhc-CcchHHHHHhhcCChHHHHHHhhcCCHHHHHHHHHHHHHHhcCC
Q 036199 543 HIAPSEFLPKLVPFLKD--ATLAVSCLVILKNMCN-TEHARVCVVETSGCLPSVAELLEIGSEEDQEHAVAILLCLCSQR 619 (710)
Q Consensus 543 ~iv~aG~V~~Lv~lL~~--~~~~~~al~iL~nLa~-~~e~r~~i~~~~g~I~~Lv~lL~~~s~~~ke~A~~aL~~Lc~~~ 619 (710)
.+++.|+++.|+.+|.+ +.++..|+.+|.+|+. +++.+..+.+ .|+++.|++++.++++..++.|+++|.+|+...
T Consensus 165 ~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~-~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~ 243 (252)
T 4hxt_A 165 AIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPTSAIKAIVD-AGGVEVLQKLLTSTDSEVQKEAQRALENIKSGG 243 (252)
T ss_dssp HHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBHHHHHHHHH-TTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHTC
T ss_pred HHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHH-CCCHHHHHHHHCCCcHHHHHHHHHHHHHHHcCC
Confidence 88899999999999965 4789999999999998 5666777777 899999999999999999999999999999876
|
| >3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.87 E-value=6.5e-22 Score=201.08 Aligned_cols=192 Identities=17% Similarity=0.123 Sum_probs=170.1
Q ss_pred cchHHHHHHhccCcH--H--HHHHHHHHHhc-cCchhhHHHhhhCcHHHHHHhhcCCCHHHHHHHHHHHHHhcc-Ccccc
Q 036199 468 DLFSLLASFLHSAAA--T--EETLAILVALS-SYAYFISKIVASGALASILNMLDSPNGKFQELAIKILHNLSS-DVDIQ 541 (710)
Q Consensus 468 gaI~~LV~lL~s~~~--~--~~Aa~~L~~Ls-~~~~nk~~I~~~GaI~~LV~LL~~~~~~~~~~A~~aL~nLs~-~~en~ 541 (710)
-.+|.||++|.+++. . ..|+++|.+|+ .++++|..|.+.|+||+||.+|.++++++++.|+++|.||+. +++|+
T Consensus 8 ~~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~nk 87 (233)
T 3tt9_A 8 MTLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDNK 87 (233)
T ss_dssp CCHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred ccHHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHH
Confidence 368999999998875 3 48899999999 578899999999999999999999999999999999999998 68999
Q ss_pred cccccccchhchHHhhc---CchHHHHHHHHHHHHhcCcchHHHHHhhcCChHHHHHHhh---c-------------CCH
Q 036199 542 SHIAPSEFLPKLVPFLK---DATLAVSCLVILKNMCNTEHARVCVVETSGCLPSVAELLE---I-------------GSE 602 (710)
Q Consensus 542 ~~iv~aG~V~~Lv~lL~---~~~~~~~al~iL~nLa~~~e~r~~i~~~~g~I~~Lv~lL~---~-------------~s~ 602 (710)
..++++|+||+|+++|. +.++++.|+++|+||+.++++|..|++ ++|+.|+.++. . .++
T Consensus 88 ~~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~~~k~~i~~--~~i~~Lv~ll~~p~sG~~~~~~~~~~~~~~~ 165 (233)
T 3tt9_A 88 LEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKLKNLMIT--EALLTLTENIIIPFSGWPEGDYPKANGLLDF 165 (233)
T ss_dssp HHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSGGGHHHHHH--HHHHHHCCCCCHHHHCCCGGGCCCCCTTCCH
T ss_pred HHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcChhhHHHHHh--ccHHHHHHHHhccccCCcccccccccccchH
Confidence 99999999999999995 346899999999999999999999987 36999998763 1 266
Q ss_pred HHHHHHHHHHHHHhcCChHHHHHHHhC-CchHHHHHHhhcC------CHHHHHHHHHHHHHhhhcc
Q 036199 603 EDQEHAVAILLCLCSQRDQYCKLVMNE-GVIPSLVKISVYG------NDKAKVSALELRRLLRDVA 661 (710)
Q Consensus 603 ~~ke~A~~aL~~Lc~~~~~~~~~v~~~-G~v~~Lv~L~~~g------t~~~k~kA~~LL~~l~~~~ 661 (710)
.++++|.++|.+|++.++++++.+.+. |+|+.|+.+++.+ +++.+|.|..+|+.|..+-
T Consensus 166 ~v~~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs~~~ 231 (233)
T 3tt9_A 166 DIFYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLSYQL 231 (233)
T ss_dssp HHHHHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCCCC
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHhhh
Confidence 999999999999999888899999876 7789999997764 5688999999999998653
|
| >1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A | Back alignment and structure |
|---|
Probab=99.86 E-value=9e-21 Score=215.72 Aligned_cols=268 Identities=17% Similarity=0.183 Sum_probs=234.4
Q ss_pred hhhcCCCHHHHHHHHHHHHHHHccC-cccchhcccCCcHHHHHHHhhccccCCCHHHHHHHHHHHHHHhccC-CCCCccc
Q 036199 388 SRLTELNWDCQCKVIEDYETRLEHD-NQVSHSLSSTNFVEPLIRFLRDARDLHDSRAQRIGCRLLLAFVSKN-RSGIPYL 465 (710)
Q Consensus 388 ~~L~s~~~e~q~~Al~~L~~Lak~~-~~~r~~I~~~G~I~~LV~lL~s~~~~~d~~~q~~A~~~L~nL~~~~-~~k~~i~ 465 (710)
..|.+++++.|..|+..|+.++... ..++..+.+.|+++.|+.+|.+. .++.+|..|+.+|.+++.+. ..+..++
T Consensus 94 ~~L~s~~~~~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~~~---~~~~v~~~A~~~L~~l~~~~~~~~~~~~ 170 (530)
T 1wa5_B 94 QQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMREN---QPEMLQLEAAWALTNIASGTSAQTKVVV 170 (530)
T ss_dssp HHHSCSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTT---SCHHHHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred HHHcCCCHHHHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHhCCC---CCHHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 6778889999999999999987643 45566778899999999999872 27999999999999997643 3445566
Q ss_pred cccchHHHHHHhccCcH--HHHHHHHHHHhccC-chhhHHHhhhCcHHHHHHhhcCCCHHHHHHHHHHHHHhccCc-ccc
Q 036199 466 NEDLFSLLASFLHSAAA--TEETLAILVALSSY-AYFISKIVASGALASILNMLDSPNGKFQELAIKILHNLSSDV-DIQ 541 (710)
Q Consensus 466 ~~gaI~~LV~lL~s~~~--~~~Aa~~L~~Ls~~-~~nk~~I~~~GaI~~LV~LL~~~~~~~~~~A~~aL~nLs~~~-en~ 541 (710)
..|+++.|+.+|.+++. ++.|+++|.+|+.. +.++..+...|++++|+.+|.+.++.++..|+++|.||+.+. .+.
T Consensus 171 ~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~ 250 (530)
T 1wa5_B 171 DADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQP 250 (530)
T ss_dssp HTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCSSSCC
T ss_pred HCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHhccCCHHHHHHHHHHHHHHhCCCCCCC
Confidence 88999999999998765 37999999999965 678888889999999999999999999999999999999876 666
Q ss_pred cccccccchhchHHhhcC--chHHHHHHHHHHHHhcC-cchHHHHHhhcCChHHHHHHhhcCCHHHHHHHHHHHHHHhcC
Q 036199 542 SHIAPSEFLPKLVPFLKD--ATLAVSCLVILKNMCNT-EHARVCVVETSGCLPSVAELLEIGSEEDQEHAVAILLCLCSQ 618 (710)
Q Consensus 542 ~~iv~aG~V~~Lv~lL~~--~~~~~~al~iL~nLa~~-~e~r~~i~~~~g~I~~Lv~lL~~~s~~~ke~A~~aL~~Lc~~ 618 (710)
......|+++.|+.+|.+ +.+...|+++|.+|+.. ++....+.+ .|+++.|+.+|..+++..++.|+++|.+++.+
T Consensus 251 ~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~-~~~v~~Lv~lL~~~~~~v~~~a~~~L~~l~~~ 329 (530)
T 1wa5_B 251 DWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVID-VRIPKRLVELLSHESTLVQTPALRAVGNIVTG 329 (530)
T ss_dssp CHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHH-TTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTS
T ss_pred cHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHh-cCcHHHHHHHHCCCChhhHHHHHHHHHHHHcC
Confidence 667779999999999965 46789999999999985 556677777 79999999999999999999999999999999
Q ss_pred ChHHHHHHHhCCchHHHHHHhhcCCHHHHHHHHHHHHHhhh
Q 036199 619 RDQYCKLVMNEGVIPSLVKISVYGNDKAKVSALELRRLLRD 659 (710)
Q Consensus 619 ~~~~~~~v~~~G~v~~Lv~L~~~gt~~~k~kA~~LL~~l~~ 659 (710)
++...+.+.+.|+++.|+.++.+++...++.|.+.|..+..
T Consensus 330 ~~~~~~~~~~~~~l~~L~~lL~~~~~~vr~~A~~aL~~l~~ 370 (530)
T 1wa5_B 330 NDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITA 370 (530)
T ss_dssp CHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHcchHHHHHHHHcCCCHHHHHHHHHHHHHHHc
Confidence 88888889999999999999999999999999999998875
|
| >1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A | Back alignment and structure |
|---|
Probab=99.86 E-value=9.1e-21 Score=215.70 Aligned_cols=268 Identities=15% Similarity=0.088 Sum_probs=234.9
Q ss_pred hhhcCC-CHHHHHHHHHHHHHHHccCcccchhcccCCcHHHHHHHhhccccCCCHHHHHHHHHHHHHHhccC-CCCCccc
Q 036199 388 SRLTEL-NWDCQCKVIEDYETRLEHDNQVSHSLSSTNFVEPLIRFLRDARDLHDSRAQRIGCRLLLAFVSKN-RSGIPYL 465 (710)
Q Consensus 388 ~~L~s~-~~e~q~~Al~~L~~Lak~~~~~r~~I~~~G~I~~LV~lL~s~~~~~d~~~q~~A~~~L~nL~~~~-~~k~~i~ 465 (710)
..|.+. +++.|..|++.|..++..+++++..+...|+++.|+.+|.+ .+..+++.|+.+|.+++.+. .++..+.
T Consensus 137 ~~L~~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~----~~~~vr~~A~~aL~~l~~~~~~~~~~~~ 212 (530)
T 1wa5_B 137 EFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYT----GSVEVKEQAIWALGNVAGDSTDYRDYVL 212 (530)
T ss_dssp HTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHH----CCHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHcC----CCHHHHHHHHHHHHHHhCCCccchHHHH
Confidence 556665 78999999999999999888889899999999999999987 78999999999999997653 4555667
Q ss_pred cccchHHHHHHhccCcH--HHHHHHHHHHhccCc-hhhHHHhhhCcHHHHHHhhcCCCHHHHHHHHHHHHHhccC-cccc
Q 036199 466 NEDLFSLLASFLHSAAA--TEETLAILVALSSYA-YFISKIVASGALASILNMLDSPNGKFQELAIKILHNLSSD-VDIQ 541 (710)
Q Consensus 466 ~~gaI~~LV~lL~s~~~--~~~Aa~~L~~Ls~~~-~nk~~I~~~GaI~~LV~LL~~~~~~~~~~A~~aL~nLs~~-~en~ 541 (710)
..|+++.|+.+|.+++. ...|+++|.+|+... .........|++|.|+.+|.++++.++..|+++|.+|+.. ++..
T Consensus 213 ~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~ 292 (530)
T 1wa5_B 213 QCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAI 292 (530)
T ss_dssp HTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCSSSCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHH
T ss_pred HcCcHHHHHHHhccCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCHHHH
Confidence 78999999999998664 368999999999765 5555666789999999999999999999999999999975 4566
Q ss_pred cccccccchhchHHhhcC--chHHHHHHHHHHHHhcC-cchHHHHHhhcCChHHHHHHhhcCCHHHHHHHHHHHHHHhcC
Q 036199 542 SHIAPSEFLPKLVPFLKD--ATLAVSCLVILKNMCNT-EHARVCVVETSGCLPSVAELLEIGSEEDQEHAVAILLCLCSQ 618 (710)
Q Consensus 542 ~~iv~aG~V~~Lv~lL~~--~~~~~~al~iL~nLa~~-~e~r~~i~~~~g~I~~Lv~lL~~~s~~~ke~A~~aL~~Lc~~ 618 (710)
..+++.|+++.|+.+|.+ ..++..|+.+|.+|+.. ++....+.+ .|+++.|+.+|.++++..++.|+++|.+++..
T Consensus 293 ~~~~~~~~v~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~-~~~l~~L~~lL~~~~~~vr~~A~~aL~~l~~~ 371 (530)
T 1wa5_B 293 QAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVIN-AGVLPALRLLLSSPKENIKKEACWTISNITAG 371 (530)
T ss_dssp HHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHH-TTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTS
T ss_pred HHHHhcCcHHHHHHHHCCCChhhHHHHHHHHHHHHcCCHHHHHHHHH-cchHHHHHHHHcCCCHHHHHHHHHHHHHHHcC
Confidence 778889999999999965 46789999999999975 555666676 79999999999999999999999999999998
Q ss_pred ChHHHHHHHhCCchHHHHHHhhcCCHHHHHHHHHHHHHhhhc
Q 036199 619 RDQYCKLVMNEGVIPSLVKISVYGNDKAKVSALELRRLLRDV 660 (710)
Q Consensus 619 ~~~~~~~v~~~G~v~~Lv~L~~~gt~~~k~kA~~LL~~l~~~ 660 (710)
++...+.+++.|+++.|+.++.+++++++..|.+.|..|...
T Consensus 372 ~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~ 413 (530)
T 1wa5_B 372 NTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSG 413 (530)
T ss_dssp CHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhc
Confidence 878888888999999999999999999999999999988654
|
| >2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A | Back alignment and structure |
|---|
Probab=99.85 E-value=7.4e-20 Score=202.23 Aligned_cols=268 Identities=14% Similarity=0.150 Sum_probs=232.3
Q ss_pred hhhcCCCHHHHHHHHHHHHHHHccCcccchhcccCCcHHHHHHHhhccccCCCHHHHHHHHHHHHHHhccC--CCCCccc
Q 036199 388 SRLTELNWDCQCKVIEDYETRLEHDNQVSHSLSSTNFVEPLIRFLRDARDLHDSRAQRIGCRLLLAFVSKN--RSGIPYL 465 (710)
Q Consensus 388 ~~L~s~~~e~q~~Al~~L~~Lak~~~~~r~~I~~~G~I~~LV~lL~s~~~~~d~~~q~~A~~~L~nL~~~~--~~k~~i~ 465 (710)
..|.+.+++.+..|++.|..++..+++++..+.+.|+++.|+.+|.+. .+..+++.|+.+|.+++.+. ..+..+
T Consensus 114 ~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~---~~~~v~~~a~~~L~~l~~~~~~~~~~~~- 189 (450)
T 2jdq_A 114 ELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQ---NRLTMTRNAVWALSNLCRGKSPPPEFAK- 189 (450)
T ss_dssp HHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTSC---CCHHHHHHHHHHHHHHHCCSSSCCCGGG-
T ss_pred HHHcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCC---CCHHHHHHHHHHHHHHhCCCCCCCCHHH-
Confidence 556677899999999999999999888999999999999999999852 57899999999999997643 333333
Q ss_pred cccchHHHHHHhccCcHH--HHHHHHHHHhccC-chhhHHHhhhCcHHHHHHhhcCCCHHHHHHHHHHHHHhccCccc-c
Q 036199 466 NEDLFSLLASFLHSAAAT--EETLAILVALSSY-AYFISKIVASGALASILNMLDSPNGKFQELAIKILHNLSSDVDI-Q 541 (710)
Q Consensus 466 ~~gaI~~LV~lL~s~~~~--~~Aa~~L~~Ls~~-~~nk~~I~~~GaI~~LV~LL~~~~~~~~~~A~~aL~nLs~~~en-~ 541 (710)
-.|+++.|+.+|.+++.. ..|+++|.+|+.. ++++..+...|+++.|+.+|.++++.++..|+.+|.+|+...++ .
T Consensus 190 ~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~ 269 (450)
T 2jdq_A 190 VSPCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTGDDIQT 269 (450)
T ss_dssp TGGGHHHHHHHTTCCCHHHHHHHHHHHHHHTSSSHHHHHHHHHTTTHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHH
T ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHHHHCCCcHHHHHHHHcCcHHHHHHHHCCCchhHHHHHHHHHHHHhhCChHHH
Confidence 389999999999987753 6899999999975 46777788899999999999999999999999999999986554 4
Q ss_pred cccccccchhchHHhhcC--chHHHHHHHHHHHHhc-CcchHHHHHhhcCChHHHHHHhhcCCHHHHHHHHHHHHHHhcC
Q 036199 542 SHIAPSEFLPKLVPFLKD--ATLAVSCLVILKNMCN-TEHARVCVVETSGCLPSVAELLEIGSEEDQEHAVAILLCLCSQ 618 (710)
Q Consensus 542 ~~iv~aG~V~~Lv~lL~~--~~~~~~al~iL~nLa~-~~e~r~~i~~~~g~I~~Lv~lL~~~s~~~ke~A~~aL~~Lc~~ 618 (710)
..+++.|+++.|+.+|.+ +.++..|+.+|.+|+. +++....+.+ .|+++.|+.+|..+++..+..|+++|.+++..
T Consensus 270 ~~~~~~~~l~~L~~ll~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~-~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~ 348 (450)
T 2jdq_A 270 QVILNCSALQSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVID-ANIFPALISILQTAEFRTRKEAAWAITNATSG 348 (450)
T ss_dssp HHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHH-TTHHHHHHHHHHHSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCccHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHH-CCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcC
Confidence 557789999999999965 4679999999999997 6677777777 79999999999999999999999999999986
Q ss_pred -ChHHHHHHHhCCchHHHHHHhhcCCHHHHHHHHHHHHHhhhc
Q 036199 619 -RDQYCKLVMNEGVIPSLVKISVYGNDKAKVSALELRRLLRDV 660 (710)
Q Consensus 619 -~~~~~~~v~~~G~v~~Lv~L~~~gt~~~k~kA~~LL~~l~~~ 660 (710)
+++..+.+.+.|+++.|+.++.++++++++.|...|..|...
T Consensus 349 ~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~ 391 (450)
T 2jdq_A 349 GSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVALNGLENILRL 391 (450)
T ss_dssp CCHHHHHHHHHHTCHHHHHHGGGSSCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHh
Confidence 566777788999999999999999999999999998877654
|
| >2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A | Back alignment and structure |
|---|
Probab=99.85 E-value=4.2e-20 Score=204.17 Aligned_cols=267 Identities=14% Similarity=0.068 Sum_probs=230.3
Q ss_pred hhhcCC-CHHHHHHHHHHHHHHHccCcccchhcccCCcHHHHHHHhhccccCCCHHHHHHHHHHHHHHhccC-CCCCccc
Q 036199 388 SRLTEL-NWDCQCKVIEDYETRLEHDNQVSHSLSSTNFVEPLIRFLRDARDLHDSRAQRIGCRLLLAFVSKN-RSGIPYL 465 (710)
Q Consensus 388 ~~L~s~-~~e~q~~Al~~L~~Lak~~~~~r~~I~~~G~I~~LV~lL~s~~~~~d~~~q~~A~~~L~nL~~~~-~~k~~i~ 465 (710)
..|.+. +.+.|..|++.|..++..++++...+.+.|+++.|+.+|.+ .++.+++.|+.+|.+++.+. ..+..++
T Consensus 71 ~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~----~~~~vr~~a~~~L~~l~~~~~~~~~~~~ 146 (450)
T 2jdq_A 71 EFLKRKENCTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSS----EFEDVQEQAVWALGNIAGDSTMCRDYVL 146 (450)
T ss_dssp HHHTCTTCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTHHHHHHHHTTC----SCHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHhCCCHHHHHHHHcC----CCHHHHHHHHHHHHHHccCCHHHHHHHH
Confidence 556666 78999999999999999888888888889999999999987 68999999999999997654 4455566
Q ss_pred cccchHHHHHHhcc-CcH--HHHHHHHHHHhccCc--hhhHHHhhhCcHHHHHHhhcCCCHHHHHHHHHHHHHhccC-cc
Q 036199 466 NEDLFSLLASFLHS-AAA--TEETLAILVALSSYA--YFISKIVASGALASILNMLDSPNGKFQELAIKILHNLSSD-VD 539 (710)
Q Consensus 466 ~~gaI~~LV~lL~s-~~~--~~~Aa~~L~~Ls~~~--~nk~~I~~~GaI~~LV~LL~~~~~~~~~~A~~aL~nLs~~-~e 539 (710)
+.|+++.|+.+|.+ .+. +..|+++|.+|+... ..+..+. .|++|.|+.+|.++++.++..|+++|.+|+.+ ++
T Consensus 147 ~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~-~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~ 225 (450)
T 2jdq_A 147 DCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKV-SPCLNVLSWLLFVSDTDVLADACWALSYLSDGPND 225 (450)
T ss_dssp HTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCSSSCCCGGGT-GGGHHHHHHHTTCCCHHHHHHHHHHHHHHTSSSHH
T ss_pred HCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHH-HHHHHHHHHHHccCCHHHHHHHHHHHHHHHCCCcH
Confidence 78999999999985 343 469999999999653 3333333 89999999999999999999999999999985 46
Q ss_pred cccccccccchhchHHhhcC--chHHHHHHHHHHHHhcCcch-HHHHHhhcCChHHHHHHhhcCCHHHHHHHHHHHHHHh
Q 036199 540 IQSHIAPSEFLPKLVPFLKD--ATLAVSCLVILKNMCNTEHA-RVCVVETSGCLPSVAELLEIGSEEDQEHAVAILLCLC 616 (710)
Q Consensus 540 n~~~iv~aG~V~~Lv~lL~~--~~~~~~al~iL~nLa~~~e~-r~~i~~~~g~I~~Lv~lL~~~s~~~ke~A~~aL~~Lc 616 (710)
++..++..|+++.|+.+|.+ ..++..|+.+|.+|+.+.+. +..+.+ .|+++.|+.+|.++++..++.|+++|.+++
T Consensus 226 ~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~-~~~l~~L~~ll~~~~~~vr~~a~~~L~~l~ 304 (450)
T 2jdq_A 226 KIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTGDDIQTQVILN-CSALQSLLHLLSSPKESIKKEACWTISNIT 304 (450)
T ss_dssp HHHHHHHTTTHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHT-TTHHHHHHHHTTCSSHHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCcHHHHHHHHCCCchhHHHHHHHHHHHHhhCChHHHHHHHH-CccHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 67778889999999999965 46799999999999986544 455666 799999999999999999999999999999
Q ss_pred cCChHHHHHHHhCCchHHHHHHhhcCCHHHHHHHHHHHHHhhhc
Q 036199 617 SQRDQYCKLVMNEGVIPSLVKISVYGNDKAKVSALELRRLLRDV 660 (710)
Q Consensus 617 ~~~~~~~~~v~~~G~v~~Lv~L~~~gt~~~k~kA~~LL~~l~~~ 660 (710)
.+++...+.+.+.|+++.|+.++.++++++|..|.+.|..+...
T Consensus 305 ~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~ 348 (450)
T 2jdq_A 305 AGNRAQIQTVIDANIFPALISILQTAEFRTRKEAAWAITNATSG 348 (450)
T ss_dssp TSCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcC
Confidence 98878888899999999999999999999999999999988653
|
| >1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A | Back alignment and structure |
|---|
Probab=99.85 E-value=1.5e-20 Score=212.38 Aligned_cols=268 Identities=17% Similarity=0.175 Sum_probs=224.8
Q ss_pred hhhcCCCHHHHHHHHHHHHHHHccCcccchhcc-cCCcHHHHHHHhhccccCCCHHHHHHHHHHHHHHhccCCCCCcccc
Q 036199 388 SRLTELNWDCQCKVIEDYETRLEHDNQVSHSLS-STNFVEPLIRFLRDARDLHDSRAQRIGCRLLLAFVSKNRSGIPYLN 466 (710)
Q Consensus 388 ~~L~s~~~e~q~~Al~~L~~Lak~~~~~r~~I~-~~G~I~~LV~lL~s~~~~~d~~~q~~A~~~L~nL~~~~~~k~~i~~ 466 (710)
..|.+.+...|..|+..|..++..++ ++..+. ..|+++.|+++|.++ .+..+++.|+.+|.+++.+..++..+.+
T Consensus 24 ~lL~~~~~~v~~~A~~~L~~l~~~~~-~~~~~~~~~~~i~~Lv~~L~~~---~~~~~~~~a~~~L~~ls~~~~~~~~i~~ 99 (529)
T 1jdh_A 24 KLLNDEDQVVVNKAAVMVHQLSKKEA-SRHAIMRSPQMVSAIVRTMQNT---NDVETARCTAGTLHNLSHHREGLLAIFK 99 (529)
T ss_dssp HHHTCSCHHHHHHHHHHHHHHHTSHH-HHHHHHTCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHHHTTSHHHHHHHHH
T ss_pred HHhCCCCHHHHHHHHHHHHHHHcCCc-cHHHHHhCcchHHHHHHHHhcC---CCHHHHHHHHHHHHHHHcCchhHHHHHH
Confidence 56677889999999999999997654 555554 569999999999762 4899999999999999876667778888
Q ss_pred ccchHHHHHHhccCcHH--HHHHHHHHHhccC-chhhHHHhhhCcHHHHHHhhcCCCHHHHHHHHHHHHHhcc-Cccccc
Q 036199 467 EDLFSLLASFLHSAAAT--EETLAILVALSSY-AYFISKIVASGALASILNMLDSPNGKFQELAIKILHNLSS-DVDIQS 542 (710)
Q Consensus 467 ~gaI~~LV~lL~s~~~~--~~Aa~~L~~Ls~~-~~nk~~I~~~GaI~~LV~LL~~~~~~~~~~A~~aL~nLs~-~~en~~ 542 (710)
.|+++.|+.+|++++.. ..|+++|.+|+.. +.++..+.+.|++|.|+++|.+++.+.+..++.+|.+|+. +++++.
T Consensus 100 ~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~~L~~la~~~~~~~~ 179 (529)
T 1jdh_A 100 SGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKL 179 (529)
T ss_dssp TTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred cCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcchHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHH
Confidence 99999999999988753 6999999999965 5678888899999999999999999999999999999997 578888
Q ss_pred ccccccchhchHHhhcC---chHHHHHHHHHHHHhcCcchHHHHHhhcCChHHH--------------------------
Q 036199 543 HIAPSEFLPKLVPFLKD---ATLAVSCLVILKNMCNTEHARVCVVETSGCLPSV-------------------------- 593 (710)
Q Consensus 543 ~iv~aG~V~~Lv~lL~~---~~~~~~al~iL~nLa~~~e~r~~i~~~~g~I~~L-------------------------- 593 (710)
.+++.|+++.|+.+|.+ ......++.+|.+|+.+++++..+.+ .|+++.|
T Consensus 180 ~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~-~g~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~ 258 (529)
T 1jdh_A 180 IILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVE-AGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAA 258 (529)
T ss_dssp HHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSTTHHHHHHH-TTHHHHHHTTTTSSCHHHHHHHHHHHHHHHTTC
T ss_pred HHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhcCcccHHHHHH-CCCHHHHHHHHhCCChHHHHHHHHHHHHHhcCC
Confidence 88888999999998853 24567788888999888888888776 5655554
Q ss_pred -------------HHHhhcCCHHHHHHHHHHHHHHhcCChHHHHHHHhCCchHHHHHHhhcC--CHHHHHHHHHHHHHhh
Q 036199 594 -------------AELLEIGSEEDQEHAVAILLCLCSQRDQYCKLVMNEGVIPSLVKISVYG--NDKAKVSALELRRLLR 658 (710)
Q Consensus 594 -------------v~lL~~~s~~~ke~A~~aL~~Lc~~~~~~~~~v~~~G~v~~Lv~L~~~g--t~~~k~kA~~LL~~l~ 658 (710)
+++|...++..++.|+++|.+|+.++++++..+.+.|+++.|+.++.+. ++.+++.|...|..|.
T Consensus 259 ~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~~v~~~a~~~L~nl~ 338 (529)
T 1jdh_A 259 TKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLT 338 (529)
T ss_dssp TTCSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT
T ss_pred hhhHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHHccCCHHHHHHHHHHHHHHHH
Confidence 4555556788888999999999998888999999999999999998763 3789999999999886
Q ss_pred hc
Q 036199 659 DV 660 (710)
Q Consensus 659 ~~ 660 (710)
..
T Consensus 339 ~~ 340 (529)
T 1jdh_A 339 SR 340 (529)
T ss_dssp SS
T ss_pred cC
Confidence 43
|
| >4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A | Back alignment and structure |
|---|
Probab=99.85 E-value=3.3e-20 Score=184.33 Aligned_cols=193 Identities=22% Similarity=0.307 Sum_probs=174.6
Q ss_pred cccchHHHHHHhccCcHH--HHHHHHHHHhc-cCchhhHHHhhhCcHHHHHHhhcCCCHHHHHHHHHHHHHhcc-Ccccc
Q 036199 466 NEDLFSLLASFLHSAAAT--EETLAILVALS-SYAYFISKIVASGALASILNMLDSPNGKFQELAIKILHNLSS-DVDIQ 541 (710)
Q Consensus 466 ~~gaI~~LV~lL~s~~~~--~~Aa~~L~~Ls-~~~~nk~~I~~~GaI~~LV~LL~~~~~~~~~~A~~aL~nLs~-~~en~ 541 (710)
..|..+.|+.+|.+++.. ..|+++|.+|+ ..++++..+.+.|++|.|+.+|.++++.++..|+++|.||+. +++++
T Consensus 10 ~~~~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~ 89 (210)
T 4db6_A 10 HGSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQI 89 (210)
T ss_dssp ---CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHH
T ss_pred ccchhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHH
Confidence 568899999999988763 69999999999 677889999999999999999999999999999999999995 67888
Q ss_pred cccccccchhchHHhhcC--chHHHHHHHHHHHHhc-CcchHHHHHhhcCChHHHHHHhhcCCHHHHHHHHHHHHHHhcC
Q 036199 542 SHIAPSEFLPKLVPFLKD--ATLAVSCLVILKNMCN-TEHARVCVVETSGCLPSVAELLEIGSEEDQEHAVAILLCLCSQ 618 (710)
Q Consensus 542 ~~iv~aG~V~~Lv~lL~~--~~~~~~al~iL~nLa~-~~e~r~~i~~~~g~I~~Lv~lL~~~s~~~ke~A~~aL~~Lc~~ 618 (710)
..+++.|+|+.|+.+|.+ +.++..|+++|.||+. .++.+..+.+ .|+++.|+.+|.++++..++.|+++|.++|..
T Consensus 90 ~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~-~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~ 168 (210)
T 4db6_A 90 QAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVID-AGALPALVQLLSSPNEQILQEALWALSNIASG 168 (210)
T ss_dssp HHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHH-TTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTS
T ss_pred HHHHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHH-cCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcC
Confidence 999999999999999965 4679999999999997 5566677777 79999999999999999999999999999999
Q ss_pred ChHHHHHHHhCCchHHHHHHhhcCCHHHHHHHHHHHHHhhh
Q 036199 619 RDQYCKLVMNEGVIPSLVKISVYGNDKAKVSALELRRLLRD 659 (710)
Q Consensus 619 ~~~~~~~v~~~G~v~~Lv~L~~~gt~~~k~kA~~LL~~l~~ 659 (710)
++..+..+.+.|+++.|+.++.++++.+++.|.++|..|..
T Consensus 169 ~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~ 209 (210)
T 4db6_A 169 GNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS 209 (210)
T ss_dssp CHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHCC
T ss_pred CcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHhc
Confidence 88899999999999999999999999999999999998864
|
| >2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.85 E-value=1.6e-20 Score=219.08 Aligned_cols=267 Identities=17% Similarity=0.169 Sum_probs=229.5
Q ss_pred hhhcCCCHHHHHHHHHHHHHHHccCcccchhcc-cCCcHHHHHHHhhccccCCCHHHHHHHHHHHHHHhccCCCCCcccc
Q 036199 388 SRLTELNWDCQCKVIEDYETRLEHDNQVSHSLS-STNFVEPLIRFLRDARDLHDSRAQRIGCRLLLAFVSKNRSGIPYLN 466 (710)
Q Consensus 388 ~~L~s~~~e~q~~Al~~L~~Lak~~~~~r~~I~-~~G~I~~LV~lL~s~~~~~d~~~q~~A~~~L~nL~~~~~~k~~i~~ 466 (710)
..|.+.+..+|..|+..|..++..+. ++..+. ..|+++.|+++|.+. .+.++++.|+.+|.+++.+..++..+.+
T Consensus 21 ~lL~~~~~~vr~~A~~~L~~La~~~~-~~~~i~~~~~~i~~Lv~~L~~~---~~~~~~~~A~~~L~~Ls~~~~~~~~i~~ 96 (644)
T 2z6h_A 21 KLLNDEDQVVVNKAAVMVHQLSKKEA-SRHAIMRSPQMVSAIVRTMQNT---NDVETARCTAGTLHNLSHHREGLLAIFK 96 (644)
T ss_dssp HHHTCSCHHHHHHHHHHHHHHHTSTT-HHHHHTTCHHHHHHHHHHHHSC---CCHHHHHHHHHHHHHHTTSHHHHHHHHT
T ss_pred HHHcCCCHHHHHHHHHHHHHHHCCCh-hHHHHHhccChHHHHHHHHhcC---CCHHHHHHHHHHHHHHhcChhhHHHHHH
Confidence 56677889999999999999998765 565555 459999999999862 4899999999999999876667788888
Q ss_pred ccchHHHHHHhccCcH--HHHHHHHHHHhccC-chhhHHHhhhCcHHHHHHhhcCCCHHHHHHHHHHHHHhcc-Cccccc
Q 036199 467 EDLFSLLASFLHSAAA--TEETLAILVALSSY-AYFISKIVASGALASILNMLDSPNGKFQELAIKILHNLSS-DVDIQS 542 (710)
Q Consensus 467 ~gaI~~LV~lL~s~~~--~~~Aa~~L~~Ls~~-~~nk~~I~~~GaI~~LV~LL~~~~~~~~~~A~~aL~nLs~-~~en~~ 542 (710)
.|+++.|+.+|++++. +..|+++|.+|+.. +..+..+.+.|+||.|+++|.+++++.+..++.+|.+|+. +++++.
T Consensus 97 ~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~ 176 (644)
T 2z6h_A 97 SGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKL 176 (644)
T ss_dssp TTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred cCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchhHHHHHHCCChHHHHHHHCcCCHHHHHHHHHHHHHHHhcCcHHHH
Confidence 9999999999998875 36999999999965 5677788889999999999999999999999999999996 788999
Q ss_pred ccccccchhchHHhhcCc---hHHHHHHHHHHHHhcCcchHHHHHhhcCChHHHHH------------------------
Q 036199 543 HIAPSEFLPKLVPFLKDA---TLAVSCLVILKNMCNTEHARVCVVETSGCLPSVAE------------------------ 595 (710)
Q Consensus 543 ~iv~aG~V~~Lv~lL~~~---~~~~~al~iL~nLa~~~e~r~~i~~~~g~I~~Lv~------------------------ 595 (710)
.+++.|+++.|+.+|.+. .....++.+|.+|+.+++++..+++ .|+++.|+.
T Consensus 177 ~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~~~~~~~l~~-~g~l~~L~~ll~~~~~~~~~~a~~~L~nL~~~~ 255 (644)
T 2z6h_A 177 IILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVE-AGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAA 255 (644)
T ss_dssp HHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCTTHHHHHHH-TTHHHHHHTTTTCSCHHHHHHHHHHHHHHGGGC
T ss_pred HHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhcCcccHHHHHH-CCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcc
Confidence 999999999999999653 4678899999999999999999887 676666654
Q ss_pred ---------------HhhcCCHHHHHHHHHHHHHHhcCChHHHHHHHhCCchHHHHHHhhcC-C-HHHHHHHHHHHHHhh
Q 036199 596 ---------------LLEIGSEEDQEHAVAILLCLCSQRDQYCKLVMNEGVIPSLVKISVYG-N-DKAKVSALELRRLLR 658 (710)
Q Consensus 596 ---------------lL~~~s~~~ke~A~~aL~~Lc~~~~~~~~~v~~~G~v~~Lv~L~~~g-t-~~~k~kA~~LL~~l~ 658 (710)
+|..+++..++.|+++|.+|+.+++.++..+.+.|+++.|+.++.+. + +.+++.|...|..|.
T Consensus 256 ~~~~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~~~v~~~a~~aL~nL~ 335 (644)
T 2z6h_A 256 TKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLT 335 (644)
T ss_dssp TTCCSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT
T ss_pred hhhhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHHccCCcHHHHHHHHHHHHHHh
Confidence 44556788888999999999998888899999999999999998764 3 799999999999886
Q ss_pred h
Q 036199 659 D 659 (710)
Q Consensus 659 ~ 659 (710)
.
T Consensus 336 ~ 336 (644)
T 2z6h_A 336 S 336 (644)
T ss_dssp S
T ss_pred c
Confidence 4
|
| >2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus} | Back alignment and structure |
|---|
Probab=99.84 E-value=7.6e-22 Score=169.06 Aligned_cols=74 Identities=28% Similarity=0.403 Sum_probs=69.5
Q ss_pred cCCCCCcccccCCccccCCceecCCCCccchhhHHHHhhhCCCCCCCCCCccCCCCCcccHHHHHHHHHHHHHcC
Q 036199 262 RAIIPEVFKCPLSLRLMYDPVVIESGQTFERMWIQKWFEEGNHTCPKTKMKLVCQSLTPNTAMKDLISKWCMNLC 336 (710)
Q Consensus 262 ~~~~p~~f~CPI~~~~m~DPV~~~~G~ty~r~~I~~w~~~g~~~cP~t~~~l~~~~l~pN~~l~~~i~~w~~~~~ 336 (710)
...+|++|.||||+++|+|||+++|||||||.||++||.. +.+||.|++++....|+||..|+++|+.|+..|+
T Consensus 8 ~~~~p~~~~CpI~~~~m~dPV~~~cGhtf~r~~I~~~l~~-~~~cP~~~~~l~~~~l~pn~~L~~~i~~~~~~~~ 81 (85)
T 2kr4_A 8 YSDAPDEFRDPLMDTLMTDPVRLPSGTVMDRSIILRHLLN-SPTDPFNRQMLTESMLEPVPELKEQIQAWMREKQ 81 (85)
T ss_dssp CTTCCTTTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHH-CSBCTTTCCBCCGGGCEECHHHHHHHHHHHHHHH
T ss_pred hhcCchheECcccCchhcCCeECCCCCEECHHHHHHHHhc-CCCCCCCcCCCChHhcchHHHHHHHHHHHHHHhh
Confidence 3468999999999999999999999999999999999984 6899999999999999999999999999999875
|
| >1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2 | Back alignment and structure |
|---|
Probab=99.84 E-value=3.1e-21 Score=169.53 Aligned_cols=76 Identities=29% Similarity=0.410 Sum_probs=71.2
Q ss_pred cCCCCCcccccCCccccCCceecCCC-CccchhhHHHHhhhCCCCCCCCCCccCCCCCcccHHHHHHHHHHHHHcCCC
Q 036199 262 RAIIPEVFKCPLSLRLMYDPVVIESG-QTFERMWIQKWFEEGNHTCPKTKMKLVCQSLTPNTAMKDLISKWCMNLCSS 338 (710)
Q Consensus 262 ~~~~p~~f~CPI~~~~m~DPV~~~~G-~ty~r~~I~~w~~~g~~~cP~t~~~l~~~~l~pN~~l~~~i~~w~~~~~~~ 338 (710)
...+|++|+||||+++|+|||+++|| |||||.||++||.. +.+||.|++++....|+||+.|+++|+.|+..++..
T Consensus 16 ~~~~p~~~~CpI~~~~m~dPV~~~cG~htf~r~cI~~~l~~-~~~cP~~~~~l~~~~L~pn~~Lk~~I~~~~~~~~~~ 92 (98)
T 1wgm_A 16 YADACDEFLDPIMSTLMCDPVVLPSSRVTVDRSTIARHLLS-DQTDPFNRSPLTMDQIRPNTELKEKIQRWLAERKQQ 92 (98)
T ss_dssp CCSCCTTTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHTTT-SCBCTTTCSBCCTTTSEECHHHHHHHHHHHHHSTTC
T ss_pred hhcCcHhcCCcCccccccCCeECCCCCeEECHHHHHHHHHh-CCCCCCCCCCCChhhceEcHHHHHHHHHHHHHcchh
Confidence 45689999999999999999999999 99999999999985 679999999999999999999999999999998753
|
| >2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B | Back alignment and structure |
|---|
Probab=99.84 E-value=2.2e-21 Score=171.11 Aligned_cols=75 Identities=28% Similarity=0.402 Sum_probs=70.5
Q ss_pred ccCCCCCcccccCCccccCCceecCCCCccchhhHHHHhhhCCCCCCCCCCccCCCCCcccHHHHHHHHHHHHHcC
Q 036199 261 SRAIIPEVFKCPLSLRLMYDPVVIESGQTFERMWIQKWFEEGNHTCPKTKMKLVCQSLTPNTAMKDLISKWCMNLC 336 (710)
Q Consensus 261 ~~~~~p~~f~CPI~~~~m~DPV~~~~G~ty~r~~I~~w~~~g~~~cP~t~~~l~~~~l~pN~~l~~~i~~w~~~~~ 336 (710)
....+|++|.||||+++|+|||+++|||||||.||++||. ++.+||.|++++....|+||..|+++|+.|+..|+
T Consensus 22 ~~~~~p~~~~CpI~~~~m~dPV~~~cGhtf~r~~I~~~l~-~~~~cP~~~~~l~~~~L~pn~~Lk~~I~~~~~~~~ 96 (100)
T 2kre_A 22 DYSDAPDEFRDPLMDTLMTDPVRLPSGTIMDRSIILRHLL-NSPTDPFNRQTLTESMLEPVPELKEQIQAWMREKQ 96 (100)
T ss_dssp SCSSCSTTTBCTTTCSBCSSEEEETTTEEEEHHHHHHHTT-SCSBCSSSCCBCCTTSSEECHHHHHHHHHHHHTTT
T ss_pred hhccCcHhhCCcCccCcccCCeECCCCCEEchHHHHHHHH-cCCCCCCCCCCCChhhceECHHHHHHHHHHHHHhh
Confidence 3456899999999999999999999999999999999998 57899999999999999999999999999999886
|
| >1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A | Back alignment and structure |
|---|
Probab=99.83 E-value=7e-20 Score=206.92 Aligned_cols=266 Identities=17% Similarity=0.133 Sum_probs=230.5
Q ss_pred hhhcCCCHHHHHHHHHHHHHHHccCcccchhcccCCcHHHHHHHhhccccCCCHHHHHHHHHHHHHHhc-cCCCCCcccc
Q 036199 388 SRLTELNWDCQCKVIEDYETRLEHDNQVSHSLSSTNFVEPLIRFLRDARDLHDSRAQRIGCRLLLAFVS-KNRSGIPYLN 466 (710)
Q Consensus 388 ~~L~s~~~e~q~~Al~~L~~Lak~~~~~r~~I~~~G~I~~LV~lL~s~~~~~d~~~q~~A~~~L~nL~~-~~~~k~~i~~ 466 (710)
..|.+.+.+.|..|++.|..++..++.++..+.+.|+++.|+.+|.+ .+.+++..++.+|.+++. ++.++..+.+
T Consensus 108 ~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~----~~~~~~~~~~~~L~~la~~~~~~~~~i~~ 183 (529)
T 1jdh_A 108 KMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNK----TNVKFLAITTDCLQILAYGNQESKLIILA 183 (529)
T ss_dssp HHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGC----CCHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHcCCCHHHHHHHHHHHHHHhcCCcchHHHHHHcCCHHHHHHHHhc----CCHHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 55677788999999999999999888888889999999999999987 678999999999999975 4566777778
Q ss_pred ccchHHHHHHhccCcHH---HHHHHHHHHhccCchhhHHHhhhCcHHHHHHhhcCCCHHHHHHHHHHHHHhccCcccccc
Q 036199 467 EDLFSLLASFLHSAAAT---EETLAILVALSSYAYFISKIVASGALASILNMLDSPNGKFQELAIKILHNLSSDVDIQSH 543 (710)
Q Consensus 467 ~gaI~~LV~lL~s~~~~---~~Aa~~L~~Ls~~~~nk~~I~~~GaI~~LV~LL~~~~~~~~~~A~~aL~nLs~~~en~~~ 543 (710)
.|+++.|+.+|++++.. ..++.+|.+|+.+++++..+.+.|+++.|+.++.++++..+..|+++|.||+......
T Consensus 184 ~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~-- 261 (529)
T 1jdh_A 184 SGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQ-- 261 (529)
T ss_dssp TTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSTTHHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHHHTTCTTC--
T ss_pred CCCHHHHHHHHHhCChHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHHHHhCCChHHHHHHHHHHHHHhcCChhh--
Confidence 89999999999977642 4788999999999999999999999999999999999999999999999999765432
Q ss_pred cccccchhchHHhhcC--chHHHHHHHHHHHHhcC-cchHHHHHhhcCChHHHHHHhhc--CCHHHHHHHHHHHHHHhcC
Q 036199 544 IAPSEFLPKLVPFLKD--ATLAVSCLVILKNMCNT-EHARVCVVETSGCLPSVAELLEI--GSEEDQEHAVAILLCLCSQ 618 (710)
Q Consensus 544 iv~aG~V~~Lv~lL~~--~~~~~~al~iL~nLa~~-~e~r~~i~~~~g~I~~Lv~lL~~--~s~~~ke~A~~aL~~Lc~~ 618 (710)
....|++|.|+++|.+ +++...|+++|++|+.+ ++++..+.+ .|+++.|+++|.. .++..++.|+.+|.+|+.+
T Consensus 262 ~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~-~~~v~~L~~ll~~~~~~~~v~~~a~~~L~nl~~~ 340 (529)
T 1jdh_A 262 EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQ-VGGIEALVRTVLRAGDREDITEPAICALRHLTSR 340 (529)
T ss_dssp SCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHHHHHHHHH-TTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSS
T ss_pred HHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHH-cCChHHHHHHHHccCCHHHHHHHHHHHHHHHHcC
Confidence 2346899999999954 57899999999999985 568888888 7999999999986 3489999999999999987
Q ss_pred ChH---HHHHHHhCCchHHHHHHhhcCC-HHHHHHHHHHHHHhhhc
Q 036199 619 RDQ---YCKLVMNEGVIPSLVKISVYGN-DKAKVSALELRRLLRDV 660 (710)
Q Consensus 619 ~~~---~~~~v~~~G~v~~Lv~L~~~gt-~~~k~kA~~LL~~l~~~ 660 (710)
++. .+..+.+.|+++.|+.++.+++ +..++.|.++|..+...
T Consensus 341 ~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~v~~~a~~~l~nl~~~ 386 (529)
T 1jdh_A 341 HQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALC 386 (529)
T ss_dssp STTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHTTS
T ss_pred CchHHHHHHHHHHcCChhHHHHHhccccchHHHHHHHHHHHHHhcC
Confidence 533 5778999999999999998886 58999999999887653
|
| >4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A | Back alignment and structure |
|---|
Probab=99.82 E-value=7.9e-20 Score=181.54 Aligned_cols=193 Identities=22% Similarity=0.284 Sum_probs=170.3
Q ss_pred cCCcHHHHHHHhhccccCCCHHHHHHHHHHHHHHhc-cCCCCCccccccchHHHHHHhccCcHH--HHHHHHHHHhc-cC
Q 036199 421 STNFVEPLIRFLRDARDLHDSRAQRIGCRLLLAFVS-KNRSGIPYLNEDLFSLLASFLHSAAAT--EETLAILVALS-SY 496 (710)
Q Consensus 421 ~~G~I~~LV~lL~s~~~~~d~~~q~~A~~~L~nL~~-~~~~k~~i~~~gaI~~LV~lL~s~~~~--~~Aa~~L~~Ls-~~ 496 (710)
..|+.+.|+.+|.+ .|..+|..|+.+|.+++. +..++..+++.|+++.|+.+|++++.. +.|+++|.+|+ .+
T Consensus 10 ~~~~~~~l~~LL~s----~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~ 85 (210)
T 4db6_A 10 HGSELPQMVQQLNS----PDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG 85 (210)
T ss_dssp ---CHHHHHHHTTC----SCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSC
T ss_pred ccchhHHHHHHhcC----CCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCC
Confidence 46889999999987 789999999999999974 455566778899999999999988753 69999999999 57
Q ss_pred chhhHHHhhhCcHHHHHHhhcCCCHHHHHHHHHHHHHhcc-CcccccccccccchhchHHhhcC--chHHHHHHHHHHHH
Q 036199 497 AYFISKIVASGALASILNMLDSPNGKFQELAIKILHNLSS-DVDIQSHIAPSEFLPKLVPFLKD--ATLAVSCLVILKNM 573 (710)
Q Consensus 497 ~~nk~~I~~~GaI~~LV~LL~~~~~~~~~~A~~aL~nLs~-~~en~~~iv~aG~V~~Lv~lL~~--~~~~~~al~iL~nL 573 (710)
++++..+.+.|++|.|+.+|.++++.++..|+++|.||+. +++++..+++.|+++.|+++|.+ ..++..|+.+|.||
T Consensus 86 ~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l 165 (210)
T 4db6_A 86 NEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNI 165 (210)
T ss_dssp HHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 7899999999999999999999999999999999999996 45666788899999999999965 46799999999999
Q ss_pred hcC-cchHHHHHhhcCChHHHHHHhhcCCHHHHHHHHHHHHHHhcC
Q 036199 574 CNT-EHARVCVVETSGCLPSVAELLEIGSEEDQEHAVAILLCLCSQ 618 (710)
Q Consensus 574 a~~-~e~r~~i~~~~g~I~~Lv~lL~~~s~~~ke~A~~aL~~Lc~~ 618 (710)
+.. ++.+..+.+ .|+++.|+.++.++++..++.|+++|.+||.+
T Consensus 166 ~~~~~~~~~~~~~-~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~ 210 (210)
T 4db6_A 166 ASGGNEQKQAVKE-AGALEKLEQLQSHENEKIQKEAQEALEKLQSH 210 (210)
T ss_dssp HTSCHHHHHHHHH-TTHHHHHHHGGGCSCHHHHHHHHHHHHHHCC-
T ss_pred HcCCcHHHHHHHH-CCCHHHHHHHHhCCCHHHHHHHHHHHHHHhcC
Confidence 996 777888887 79999999999999999999999999999853
|
| >2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.82 E-value=3.1e-19 Score=208.23 Aligned_cols=266 Identities=17% Similarity=0.135 Sum_probs=229.6
Q ss_pred hhhcCCCHHHHHHHHHHHHHHHccCcccchhcccCCcHHHHHHHhhccccCCCHHHHHHHHHHHHHHhc-cCCCCCcccc
Q 036199 388 SRLTELNWDCQCKVIEDYETRLEHDNQVSHSLSSTNFVEPLIRFLRDARDLHDSRAQRIGCRLLLAFVS-KNRSGIPYLN 466 (710)
Q Consensus 388 ~~L~s~~~e~q~~Al~~L~~Lak~~~~~r~~I~~~G~I~~LV~lL~s~~~~~d~~~q~~A~~~L~nL~~-~~~~k~~i~~ 466 (710)
..|.+.+.+.|..|++.|..++...+..+..+.+.|+++.|+.+|.+ .+.+.+..++.+|.+++. +..++..+.+
T Consensus 105 ~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv~lL~~----~~~~~~~~a~~~L~~La~~~~~~~~~i~~ 180 (644)
T 2z6h_A 105 KMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNK----TNVKFLAITTDCLQILAYGNQESKLIILA 180 (644)
T ss_dssp HHTTCSSHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGC----CCHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHhCcchhHHHHHHCCChHHHHHHHCc----CCHHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 55677788999999999999999888888888999999999999987 578888888999999975 5667777888
Q ss_pred ccchHHHHHHhccCcH---HHHHHHHHHHhccCchhhHHHhhhCcHHHHHHhhcCCCHHHHHHHHHHHHHhccCcccccc
Q 036199 467 EDLFSLLASFLHSAAA---TEETLAILVALSSYAYFISKIVASGALASILNMLDSPNGKFQELAIKILHNLSSDVDIQSH 543 (710)
Q Consensus 467 ~gaI~~LV~lL~s~~~---~~~Aa~~L~~Ls~~~~nk~~I~~~GaI~~LV~LL~~~~~~~~~~A~~aL~nLs~~~en~~~ 543 (710)
.|+++.|+.+|.++.. ...++.+|.+|+..+.++..+.+.|+++.|+.++.+++...+..|+++|.||+..... .
T Consensus 181 ~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~--~ 258 (644)
T 2z6h_A 181 SGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATK--Q 258 (644)
T ss_dssp TTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCTTHHHHHHHTTHHHHHHTTTTCSCHHHHHHHHHHHHHHGGGCTT--C
T ss_pred cCChHHHHHHHHcCChHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcchh--h
Confidence 9999999999998763 2579999999999999999999999999999999999999999999999999975433 2
Q ss_pred cccccchhchHHhhcC--chHHHHHHHHHHHHhcC-cchHHHHHhhcCChHHHHHHhhc-CC-HHHHHHHHHHHHHHhcC
Q 036199 544 IAPSEFLPKLVPFLKD--ATLAVSCLVILKNMCNT-EHARVCVVETSGCLPSVAELLEI-GS-EEDQEHAVAILLCLCSQ 618 (710)
Q Consensus 544 iv~aG~V~~Lv~lL~~--~~~~~~al~iL~nLa~~-~e~r~~i~~~~g~I~~Lv~lL~~-~s-~~~ke~A~~aL~~Lc~~ 618 (710)
....|+++.|+.+|.+ +.+++.|+++|.+|+.+ ++++..+.+ .|+++.|+.+|.. ++ +..++.|+.+|.+|+..
T Consensus 259 ~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~~~~~~~~v~~-~g~v~~Lv~lL~~~~~~~~v~~~a~~aL~nL~~~ 337 (644)
T 2z6h_A 259 EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQ-VGGIEALVRTVLRAGDREDITEPAICALRHLTSR 337 (644)
T ss_dssp CSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHH-TTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSS
T ss_pred hhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHH-cCCHHHHHHHHHccCCcHHHHHHHHHHHHHHhcC
Confidence 3345899999999954 56799999999999985 577888888 7999999999986 33 89999999999999986
Q ss_pred Ch---HHHHHHHhCCchHHHHHHhhcCC-HHHHHHHHHHHHHhhhc
Q 036199 619 RD---QYCKLVMNEGVIPSLVKISVYGN-DKAKVSALELRRLLRDV 660 (710)
Q Consensus 619 ~~---~~~~~v~~~G~v~~Lv~L~~~gt-~~~k~kA~~LL~~l~~~ 660 (710)
.+ ..+..+.+.|+++.|+.++.+.+ ...++.|.++|..|...
T Consensus 338 ~~~~~~~q~~v~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nLa~~ 383 (644)
T 2z6h_A 338 HQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALC 383 (644)
T ss_dssp STTHHHHHHHHHHTTHHHHHHHTTSTTCCHHHHHHHHHHHHHHTTS
T ss_pred CchHHHHHHHHHHccChHHHHHHhCccCchHHHHHHHHHHHHHccC
Confidence 53 34566889999999999998875 68999999999887653
|
| >2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C | Back alignment and structure |
|---|
Probab=99.81 E-value=1.1e-20 Score=182.81 Aligned_cols=76 Identities=29% Similarity=0.408 Sum_probs=71.3
Q ss_pred CCCCCcccccCCccccCCceecCCCCccchhhHHHHhhhCCCCCCCCCCccCCCCCcccHHHHHHHHHHHHHcCCC
Q 036199 263 AIIPEVFKCPLSLRLMYDPVVIESGQTFERMWIQKWFEEGNHTCPKTKMKLVCQSLTPNTAMKDLISKWCMNLCSS 338 (710)
Q Consensus 263 ~~~p~~f~CPI~~~~m~DPV~~~~G~ty~r~~I~~w~~~g~~~cP~t~~~l~~~~l~pN~~l~~~i~~w~~~~~~~ 338 (710)
..+|++|+||||+++|+|||+++|||||||.||++||..++.+||.|++++....|+||+.|+++|+.|+..||+.
T Consensus 101 ~~ip~~f~CPI~~elm~DPV~~~~Ghtfer~~I~~~l~~~~~tcP~t~~~l~~~~L~pN~~Lk~~Ie~~~~~~~~~ 176 (179)
T 2f42_A 101 REIPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFDPVTRSPLTQDQLIPNLAMKEVIDAFIQENGWV 176 (179)
T ss_dssp CCCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCEECHHHHHHHHHHHHHCTTC
T ss_pred cCCcHhhcccCccccCCCCeECCCCCEECHHHHHHHHHhCCCCCCCCcCCCChhhCcchHHHHHHHHHHHHHCCCc
Confidence 4579999999999999999999999999999999999875558999999999999999999999999999999864
|
| >2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} | Back alignment and structure |
|---|
Probab=99.81 E-value=2.7e-19 Score=213.27 Aligned_cols=261 Identities=18% Similarity=0.170 Sum_probs=219.8
Q ss_pred hhhcCCCHHHHHHHHHHHHHHHccCcccchhcccCCcHHHHHHHhhccccCCCHHHHHHHHHHHHHHhccCCCCCcccc-
Q 036199 388 SRLTELNWDCQCKVIEDYETRLEHDNQVSHSLSSTNFVEPLIRFLRDARDLHDSRAQRIGCRLLLAFVSKNRSGIPYLN- 466 (710)
Q Consensus 388 ~~L~s~~~e~q~~Al~~L~~Lak~~~~~r~~I~~~G~I~~LV~lL~s~~~~~d~~~q~~A~~~L~nL~~~~~~k~~i~~- 466 (710)
..|.+++.+.+..++..|+.. ++..+. .|+++.|+.+|.+ .+..+|+.|+.+|.+++.+..++..+..
T Consensus 122 ~~L~~~~~~~r~~a~~~l~~~------~~~~i~-~g~ip~Lv~lL~~----~d~~vr~~A~~~L~~L~~~~~~~~~i~~~ 190 (780)
T 2z6g_A 122 QRLAEPSQMLKHAVVNLINYQ------DDAELA-TRAIPELTKLLND----EDQVVVNKAAVMVHQLSKKEASRHAIMRS 190 (780)
T ss_dssp ----CCSCHHHHHHHHHHHHH------HHHHHH-HHHHHHHHHHHHC----SCHHHHHHHHHHHHHHHTSHHHHHHHTTC
T ss_pred HHhcCccHHHHHHHHHHHHhh------hHHHHH-hCCHHHHHHHHCC----CCHHHHHHHHHHHHHHhCCChhHHHHHhc
Confidence 667777778888888877743 333444 8999999999986 7899999999999999876555555554
Q ss_pred ccchHHHHHHhccC-cH--HHHHHHHHHHhccCchhhHHHhhhCcHHHHHHhhcCCCHHHHHHHHHHHHHhccCc-cccc
Q 036199 467 EDLFSLLASFLHSA-AA--TEETLAILVALSSYAYFISKIVASGALASILNMLDSPNGKFQELAIKILHNLSSDV-DIQS 542 (710)
Q Consensus 467 ~gaI~~LV~lL~s~-~~--~~~Aa~~L~~Ls~~~~nk~~I~~~GaI~~LV~LL~~~~~~~~~~A~~aL~nLs~~~-en~~ 542 (710)
.|+++.|+.+|.++ +. +.+|+.+|.+|+..++++..|++.|+|+.|+++|.++++.++..|+++|.||+.+. +++.
T Consensus 191 ~~~i~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~~~~~~~~i~~~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~ 270 (780)
T 2z6g_A 191 PQMVSAIVRTMQNTNDVETARCTSGTLHNLSHHREGLLAIFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGAKM 270 (780)
T ss_dssp HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTHHH
T ss_pred cChHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCChhhHH
Confidence 58999999999865 33 46999999999999999999999999999999999999999999999999999864 5566
Q ss_pred ccccccchhchHHhhcCc--hHHHHHHHHHHHHhc-CcchHHHHHhhcCChHHHHHHhhcCCH-HHHHHHHHHHHHHhcC
Q 036199 543 HIAPSEFLPKLVPFLKDA--TLAVSCLVILKNMCN-TEHARVCVVETSGCLPSVAELLEIGSE-EDQEHAVAILLCLCSQ 618 (710)
Q Consensus 543 ~iv~aG~V~~Lv~lL~~~--~~~~~al~iL~nLa~-~~e~r~~i~~~~g~I~~Lv~lL~~~s~-~~ke~A~~aL~~Lc~~ 618 (710)
.+++.|+|+.|+.+|.++ .+...++.+|.+|+. +++++..+++ .|+++.|+.+|+.+++ ..++.|+.+|++||..
T Consensus 271 ~v~~~g~v~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~e~~~~i~~-~~~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~ 349 (780)
T 2z6g_A 271 AVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILA-SGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVC 349 (780)
T ss_dssp HHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHT-TTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTS
T ss_pred HHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHH-cCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcC
Confidence 667899999999999654 567888899999996 6899999998 6999999999998654 4567899999999976
Q ss_pred ChHHHHHHHhCCchHHHHHHhhcCCHHHHHHHHHHHHHhhhcc
Q 036199 619 RDQYCKLVMNEGVIPSLVKISVYGNDKAKVSALELRRLLRDVA 661 (710)
Q Consensus 619 ~~~~~~~v~~~G~v~~Lv~L~~~gt~~~k~kA~~LL~~l~~~~ 661 (710)
. .++..+++.|+++.|+.++.+++...++.|.+.|..|....
T Consensus 350 ~-~~~~~i~~~g~l~~Ll~lL~~~~~~~~~~a~~~L~~L~~~~ 391 (780)
T 2z6g_A 350 S-SNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAA 391 (780)
T ss_dssp T-THHHHHHHTTHHHHHGGGTTCSCHHHHHHHHHHHHHHHTTC
T ss_pred h-HHHHHHHHhchHHHHHHHHcCCchHHHHHHHHHHHHHhccc
Confidence 5 78899999999999999999999999999999999887554
|
| >2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} | Back alignment and structure |
|---|
Probab=99.80 E-value=9.7e-19 Score=208.44 Aligned_cols=265 Identities=15% Similarity=0.177 Sum_probs=226.8
Q ss_pred hhhcCCCHHHHHHHHHHHHHHHccCcccchhcccCCcHHHHHHHhhccccCCCHHHHHHHHHHHHHHhccC-CCCCcccc
Q 036199 388 SRLTELNWDCQCKVIEDYETRLEHDNQVSHSLSSTNFVEPLIRFLRDARDLHDSRAQRIGCRLLLAFVSKN-RSGIPYLN 466 (710)
Q Consensus 388 ~~L~s~~~e~q~~Al~~L~~Lak~~~~~r~~I~~~G~I~~LV~lL~s~~~~~d~~~q~~A~~~L~nL~~~~-~~k~~i~~ 466 (710)
..|.+.+.+.+..|++.|..++..... .....++++.|+.+|.+ .+..+++.|+.+|.+++.+. .++..+.+
T Consensus 367 ~lL~~~~~~~~~~a~~~L~~L~~~~~~---~~~~~~~i~~Lv~lL~~----~d~~vr~~A~~aL~~L~~~~~~~~~~i~~ 439 (780)
T 2z6g_A 367 LHLTDPSQRLVQNCLWTLRNLSDAATK---QEGMEGLLGTLVQLLGS----DDINVVTCAAGILSNLTCNNYKNKMMVCQ 439 (780)
T ss_dssp GGTTCSCHHHHHHHHHHHHHHHTTCTT---CSCCHHHHHHHHHHTTC----SCHHHHHHHHHHHHHHTSSCHHHHHHHHT
T ss_pred HHHcCCchHHHHHHHHHHHHHhccchh---hhhhhhHHHHHHHHHcC----CCHHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 456667788899999999999876543 23346899999999987 78999999999999997643 45666778
Q ss_pred ccchHHHHHHhccC-c---HHHHHHHHHHHhccCc-h---hhHHHhhhCcHHHHHHhhcCCC-HHHHHHHHHHHHHhccC
Q 036199 467 EDLFSLLASFLHSA-A---ATEETLAILVALSSYA-Y---FISKIVASGALASILNMLDSPN-GKFQELAIKILHNLSSD 537 (710)
Q Consensus 467 ~gaI~~LV~lL~s~-~---~~~~Aa~~L~~Ls~~~-~---nk~~I~~~GaI~~LV~LL~~~~-~~~~~~A~~aL~nLs~~ 537 (710)
.|+++.|+.+|.+. . ....|+.+|.+|+... + .+..+...|+++.|+++|.+++ ..+++.|+++|.||+.+
T Consensus 440 ~g~i~~Lv~lL~~~~~~~~v~~~Al~aL~nL~~~~~~~~~~~~~v~~~~~l~~L~~lL~~~~~~~v~~~A~~aL~nLa~~ 519 (780)
T 2z6g_A 440 VGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALC 519 (780)
T ss_dssp TTHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHHSS
T ss_pred CCCHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHcCCHHHHHHHhcCCChHHHHHHHHHHHHHHhcC
Confidence 99999999999752 2 3479999999998643 2 3567888999999999998877 49999999999999999
Q ss_pred cccccccccccchhchHHhhcCc------------------------hHHHHHHHHHHHHhcCcchHHHHHhhcCChHHH
Q 036199 538 VDIQSHIAPSEFLPKLVPFLKDA------------------------TLAVSCLVILKNMCNTEHARVCVVETSGCLPSV 593 (710)
Q Consensus 538 ~en~~~iv~aG~V~~Lv~lL~~~------------------------~~~~~al~iL~nLa~~~e~r~~i~~~~g~I~~L 593 (710)
++++..+++.|+|+.|+.+|.++ ++.+.++.+|++|+..++++..+.+ .|+|+.|
T Consensus 520 ~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~aa~al~nq~~~~~~~~~~v~~~a~~aL~~La~~~~~~~~l~~-~~~i~~L 598 (780)
T 2z6g_A 520 PANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEACTGALHILARDIHNRIVIRG-LNTIPLF 598 (780)
T ss_dssp HHHHHHHHHTTHHHHHHHHHHHHHHHHHHTTC------CCSTTCCHHHHHHHHHHHHHHHTTSHHHHHHHHH-TCCHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHhcchhHHHHHhhccccchhhcccChHHHHHHHHHHHHHHhcChhhHHHHHH-CCcHHHH
Confidence 99998889999999999999432 3567899999999999999988888 7999999
Q ss_pred HHHhhcCCHHHHHHHHHHHHHHhcCChHHHHHHHhCCchHHHHHHhhcCCHHHHHHHHHHHHHhhhcc
Q 036199 594 AELLEIGSEEDQEHAVAILLCLCSQRDQYCKLVMNEGVIPSLVKISVYGNDKAKVSALELRRLLRDVA 661 (710)
Q Consensus 594 v~lL~~~s~~~ke~A~~aL~~Lc~~~~~~~~~v~~~G~v~~Lv~L~~~gt~~~k~kA~~LL~~l~~~~ 661 (710)
+.+|..+++.++..|+.+|.+|+.. +..+..+.+.|+++.|+.++.+.++.+|+.|.+.|..+....
T Consensus 599 v~lL~~~~~~v~~~a~~aL~~L~~~-~~~~~~i~~~g~i~~L~~Ll~~~~~~Vr~~A~~aL~~l~~~~ 665 (780)
T 2z6g_A 599 VQLLYSPIENIQRVAAGVLCELAQD-KEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMSEDK 665 (780)
T ss_dssp HHGGGCSCHHHHHHHHHHHHHHHTS-HHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHTTS
T ss_pred HHHHcCCCHHHHHHHHHHHHHHhcC-HHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCC
Confidence 9999999999999999999999855 578899999999999999999999999999999998777644
|
| >3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.77 E-value=1e-18 Score=202.23 Aligned_cols=242 Identities=14% Similarity=0.133 Sum_probs=205.0
Q ss_pred cchhcccCCcHHHHHHHhhccccCCCHHHHHHHHHHHHHHhccCCCCCccccccchHHHHHHhccCc-----HHHHHHHH
Q 036199 415 VSHSLSSTNFVEPLIRFLRDARDLHDSRAQRIGCRLLLAFVSKNRSGIPYLNEDLFSLLASFLHSAA-----ATEETLAI 489 (710)
Q Consensus 415 ~r~~I~~~G~I~~LV~lL~s~~~~~d~~~q~~A~~~L~nL~~~~~~k~~i~~~gaI~~LV~lL~s~~-----~~~~Aa~~ 489 (710)
++..+.+.|+|+.|+.++++ .++.+|+.|+.+|.+++.+..+|..+++.|++++|+.+|.++. .+++|+.+
T Consensus 449 ~~~~l~eaGvIp~Lv~Ll~S----~s~~~re~A~~aL~nLS~d~~~R~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~A 524 (778)
T 3opb_A 449 NEKYILRTELISFLKREMHN----LSPNCKQQVVRIIYNITRSKNFIPQLAQQGAVKIILEYLANKQDIGEPIRILGCRA 524 (778)
T ss_dssp HHHHTTTTTHHHHHHHHGGG----SCHHHHHHHHHHHHHHHTSGGGHHHHHHTTHHHHHHHHTTCC---CCHHHHHHHHH
T ss_pred HHHHHHHCcCHHHHHHHHcC----CCHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHH
Confidence 66788999999999999988 7899999999999999999889999999999999999998875 24699999
Q ss_pred HHHhccCchhhHHHhh---hCcHHHHHHhhcC--CCH------------HHHHHHHHHHHHhccCccc-----ccccccc
Q 036199 490 LVALSSYAYFISKIVA---SGALASILNMLDS--PNG------------KFQELAIKILHNLSSDVDI-----QSHIAPS 547 (710)
Q Consensus 490 L~~Ls~~~~nk~~I~~---~GaI~~LV~LL~~--~~~------------~~~~~A~~aL~nLs~~~en-----~~~iv~a 547 (710)
|.+|....+....+.. .|+||+|++||.. +.. -.+..|+.||.||+..++| +..|++.
T Consensus 525 LArLlis~np~~~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~ 604 (778)
T 3opb_A 525 LTRMLIFTNPGLIFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVST 604 (778)
T ss_dssp HHHHHHTSCHHHHSSSSCSTTHHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHS
T ss_pred HHHHHhcCCHHHHcCCCccccchHHHHHHcCCCCCcccccccccccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHh
Confidence 9999866665555532 4999999999973 211 2377999999999998744 7778885
Q ss_pred -cchhchHHhhcC--chHHHHHHHHHHHHhcCcchH-HHHHhh-----cCChHHHHHHhhcCCHHHHHHHHHHHHHHhcC
Q 036199 548 -EFLPKLVPFLKD--ATLAVSCLVILKNMCNTEHAR-VCVVET-----SGCLPSVAELLEIGSEEDQEHAVAILLCLCSQ 618 (710)
Q Consensus 548 -G~V~~Lv~lL~~--~~~~~~al~iL~nLa~~~e~r-~~i~~~-----~g~I~~Lv~lL~~~s~~~ke~A~~aL~~Lc~~ 618 (710)
|+++.|..+|.+ ..++..|+.++.||+.+++++ ..+... .+.++.||.++..++.+.|+.|+++|.++++.
T Consensus 605 ~ga~~~L~~LL~s~n~~VrrAA~elI~NL~~~~e~i~~k~~~~~~~~~~~rL~lLV~Ll~s~D~~~r~AAagALAnLts~ 684 (778)
T 3opb_A 605 KVYWSTIENLMLDENVPLQRSTLELISNMMSHPLTIAAKFFNLENPQSLRNFNILVKLLQLSDVESQRAVAAIFANIATT 684 (778)
T ss_dssp HHHHHHHHHGGGCSSHHHHHHHHHHHHHHHTSGGGTGGGTSCCSSHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHhCCCHHHHHHHHHHHHHHhCCcHHHHHHHHhhcCchhhccHHHHHHHHcCCCHHHHHHHHHHHHHhcCC
Confidence 999999999964 367999999999999999886 355431 12488999999999999999999999999887
Q ss_pred ChHHHHHHHhC-CchHHHHHHhhc--CCHHHHHHHHHHHHHhhhc
Q 036199 619 RDQYCKLVMNE-GVIPSLVKISVY--GNDKAKVSALELRRLLRDV 660 (710)
Q Consensus 619 ~~~~~~~v~~~-G~v~~Lv~L~~~--gt~~~k~kA~~LL~~l~~~ 660 (710)
.+..++.+++. |+++.|+.++.+ .++..+.++..++..|-..
T Consensus 685 ~~~ia~~ll~~~~gi~~Ll~lL~~~~~~~~l~~R~~~~l~NL~~~ 729 (778)
T 3opb_A 685 IPLIAKELLTKKELIENAIQVFADQIDDIELRQRLLMLFFGLFEV 729 (778)
T ss_dssp CHHHHHHHTTCHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT
T ss_pred ChHHHHHHHHccccHHHHHHHHhccCCCHHHHHHHHHHHHHHHHh
Confidence 77777888877 899999999999 8999999999999988864
|
| >1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2 | Back alignment and structure |
|---|
Probab=99.76 E-value=3.4e-19 Score=149.98 Aligned_cols=75 Identities=48% Similarity=0.943 Sum_probs=71.5
Q ss_pred CCCCCcccccCCccccCCceecCCCCccchhhHHHHhhhCCCCCCCCCCccCCCCCcccHHHHHHHHHHHHHcCC
Q 036199 263 AIIPEVFKCPLSLRLMYDPVVIESGQTFERMWIQKWFEEGNHTCPKTKMKLVCQSLTPNTAMKDLISKWCMNLCS 337 (710)
Q Consensus 263 ~~~p~~f~CPI~~~~m~DPV~~~~G~ty~r~~I~~w~~~g~~~cP~t~~~l~~~~l~pN~~l~~~i~~w~~~~~~ 337 (710)
..+|++|.||||+++|.|||+++|||+||+.||++|+..|+.+||.|++++....++||+.|+++|+.|..+|++
T Consensus 3 ~~~~~~~~C~IC~~~~~~Pv~~~CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~~~~l~~n~~l~~~i~~~~~~~~~ 77 (78)
T 1t1h_A 3 PEFPEYFRCPISLELMKDPVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLHAGLTPNYVLKSLIALWCESNGI 77 (78)
T ss_dssp CCCSSSSSCTTTSCCCSSEEEETTTEEEEHHHHHHHHTTTCCBCTTTCCBCSSCCCEECTTTHHHHHHHHHHSCC
T ss_pred cCCcccCCCCCccccccCCEEcCCCCeecHHHHHHHHHHCcCCCCCCcCCCChhhCccCHHHHHHHHHHHHHcCC
Confidence 357899999999999999999999999999999999998889999999999999999999999999999999986
|
| >1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=1e-17 Score=176.83 Aligned_cols=176 Identities=14% Similarity=0.141 Sum_probs=160.7
Q ss_pred HHHHHHHHHhccCchhhHHHhhhCcHHHHHH-hhcCCCHHHHHHHHHHHHHhccC-cccccccccccchhchHHhhc-C-
Q 036199 484 EETLAILVALSSYAYFISKIVASGALASILN-MLDSPNGKFQELAIKILHNLSSD-VDIQSHIAPSEFLPKLVPFLK-D- 559 (710)
Q Consensus 484 ~~Aa~~L~~Ls~~~~nk~~I~~~GaI~~LV~-LL~~~~~~~~~~A~~aL~nLs~~-~en~~~iv~aG~V~~Lv~lL~-~- 559 (710)
..|+..|.+|+.+.+|...+...|++|+||. +|.++++.++..|+++|.|++.+ +.++..+++.|++|+|+.+|. +
T Consensus 58 ~~Al~~L~~lv~~~dna~~~~~~G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~LL~~~~ 137 (296)
T 1xqr_A 58 EGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDA 137 (296)
T ss_dssp HHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHhChhhHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHccCC
Confidence 5788999999998899999999999999999 99999999999999999999975 567788999999999999995 2
Q ss_pred -chHHHHHHHHHHHHhc-CcchHHHHHhhcCChHHHHHHhhcCCHHHHHHHHHHHHHHhcCChHHHHHHHhCCchHHHHH
Q 036199 560 -ATLAVSCLVILKNMCN-TEHARVCVVETSGCLPSVAELLEIGSEEDQEHAVAILLCLCSQRDQYCKLVMNEGVIPSLVK 637 (710)
Q Consensus 560 -~~~~~~al~iL~nLa~-~~e~r~~i~~~~g~I~~Lv~lL~~~s~~~ke~A~~aL~~Lc~~~~~~~~~v~~~G~v~~Lv~ 637 (710)
..+.+.|+++|.||+. ++.+...+.. .|+++.|+.+|.++++..+..|+++|.+|+.++++.+..+++.|++++|+.
T Consensus 138 ~~~v~~~A~~ALsnl~~~~~~~~~~~~~-~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~~~~~~~~vv~~g~i~~Lv~ 216 (296)
T 1xqr_A 138 CDTVRVKALFAISCLVREQEAGLLQFLR-LDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLVA 216 (296)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHH-TTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHcCCcHHHHHHHH-CCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCChHHHHHHHHcCCHHHHHH
Confidence 4679999999999997 4666778887 799999999999999999999999999999998889999999999999999
Q ss_pred HhhcCCHHHHHHHHHHHHHhhhc
Q 036199 638 ISVYGNDKAKVSALELRRLLRDV 660 (710)
Q Consensus 638 L~~~gt~~~k~kA~~LL~~l~~~ 660 (710)
|+.+.+..+++.|...|..+...
T Consensus 217 LL~~~d~~v~~~al~aL~~l~~~ 239 (296)
T 1xqr_A 217 LVRTEHSPFHEHVLGALCSLVTD 239 (296)
T ss_dssp HHTSCCSTHHHHHHHHHHHHHTT
T ss_pred HHcCCChhHHHHHHHHHHHHHhC
Confidence 99999999999999999866544
|
| >3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.74 E-value=2.6e-17 Score=190.62 Aligned_cols=267 Identities=14% Similarity=0.140 Sum_probs=212.4
Q ss_pred hhhcCCCHHHHHHHHHHHHHHHccCcccchhccc-CCcHHHHHHHhhccccCCCHHHHHHHHHHHHHHhccCC-------
Q 036199 388 SRLTELNWDCQCKVIEDYETRLEHDNQVSHSLSS-TNFVEPLIRFLRDARDLHDSRAQRIGCRLLLAFVSKNR------- 459 (710)
Q Consensus 388 ~~L~s~~~e~q~~Al~~L~~Lak~~~~~r~~I~~-~G~I~~LV~lL~s~~~~~d~~~q~~A~~~L~nL~~~~~------- 459 (710)
..|...+.+.+.-|++.|..+..+ ++.|..+++ .|+++.|+.+|++. .+..+...++.+|.|+.....
T Consensus 341 ~~L~~~~~~~~~~AvEgLaYLSl~-~~VKe~L~~d~~~L~~Lv~llk~~---~d~s~~Ygal~IL~NLt~~~~~~~~e~~ 416 (778)
T 3opb_A 341 NAISRRIVPKVEMSVEALAYLSLK-ASVKIMIRSNESFTEILLTMIKSQ---KMTHCLYGLLVIMANLSTLPEEXXXXXX 416 (778)
T ss_dssp HHTTTCCHHHHHHHHHHHHHHTTS-SHHHHHHHHCHHHHHHHHHHHTTT---CCTTHHHHHHHHHHHTTCCCCCCCCCCC
T ss_pred HHHhcCCccHHHHHHHHHHHHhCC-HHHHHHHHhCHHHHHHHHHHHhCC---CCchHHHHHHHHHHHhcCCCcccchhhh
Confidence 445555667788999999998764 567777765 68899999999852 567788899999999964221
Q ss_pred --------------------------------CCCccccccchHHHHHHhccCcH--HHHHHHHHHHhccCchhhHHHhh
Q 036199 460 --------------------------------SGIPYLNEDLFSLLASFLHSAAA--TEETLAILVALSSYAYFISKIVA 505 (710)
Q Consensus 460 --------------------------------~k~~i~~~gaI~~LV~lL~s~~~--~~~Aa~~L~~Ls~~~~nk~~I~~ 505 (710)
++..+.+.|+||.|+.++++++. ++.|+++|.+|+.+.++|..+++
T Consensus 417 ~l~~Lk~~A~~~~p~~~~~d~~~~~~~~v~~~~~~~l~eaGvIp~Lv~Ll~S~s~~~re~A~~aL~nLS~d~~~R~~lvq 496 (778)
T 3opb_A 417 XXXXXXXXXXXXXPAADKVGAEKAAKEDILLFNEKYILRTELISFLKREMHNLSPNCKQQVVRIIYNITRSKNFIPQLAQ 496 (778)
T ss_dssp ------------------CCTHHHHHHHHHHHHHHHTTTTTHHHHHHHHGGGSCHHHHHHHHHHHHHHHTSGGGHHHHHH
T ss_pred hhhhhhhhccccCcccCcccccccchHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 23456789999999999998875 47999999999999999999999
Q ss_pred hCcHHHHHHhhcCCCHH---HHHHHHHHHHHhccCcccccccc--c-ccchhchHHhhcC-ch--------------H-H
Q 036199 506 SGALASILNMLDSPNGK---FQELAIKILHNLSSDVDIQSHIA--P-SEFLPKLVPFLKD-AT--------------L-A 563 (710)
Q Consensus 506 ~GaI~~LV~LL~~~~~~---~~~~A~~aL~nLs~~~en~~~iv--~-aG~V~~Lv~lL~~-~~--------------~-~ 563 (710)
.|++++|+.+|.+++.. ++..|+.||.+|+...+....+- . .|+|++|+.+|.. +. + .
T Consensus 497 qGal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~np~~~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~ 576 (778)
T 3opb_A 497 QGAVKIILEYLANKQDIGEPIRILGCRALTRMLIFTNPGLIFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDN 576 (778)
T ss_dssp TTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTSCHHHHSSSSCSTTHHHHHHHTSCCSSSCSSCC---CCCCCHHHH
T ss_pred CCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcCCHHHHcCCCccccchHHHHHHcCCCCCcccccccccccccHHHH
Confidence 99999999999888654 89999999999997554333221 1 4999999999962 22 2 5
Q ss_pred HHHHHHHHHHhcCc-----chHHHHHhhcCChHHHHHHhhcCCHHHHHHHHHHHHHHhcCChHHHHHHHhCC------ch
Q 036199 564 VSCLVILKNMCNTE-----HARVCVVETSGCLPSVAELLEIGSEEDQEHAVAILLCLCSQRDQYCKLVMNEG------VI 632 (710)
Q Consensus 564 ~~al~iL~nLa~~~-----e~r~~i~~~~g~I~~Lv~lL~~~s~~~ke~A~~aL~~Lc~~~~~~~~~v~~~G------~v 632 (710)
-.|+.+|.|||..+ +.|..|+.+.|+++.|+.+|.+++...|+.|++++.+|+.+.....+.+...+ .+
T Consensus 577 feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL~s~n~~VrrAA~elI~NL~~~~e~i~~k~~~~~~~~~~~rL 656 (778)
T 3opb_A 577 YEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLDENVPLQRSTLELISNMMSHPLTIAAKFFNLENPQSLRNF 656 (778)
T ss_dssp HHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHTSGGGTGGGTSCCSSHHHHHHH
T ss_pred HHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHHHHhCCCHHHHHHHHHHHHHHhCCcHHHHHHHHhhcCchhhccH
Confidence 68999999999976 34777887448999999999999999999999999999986632112333222 37
Q ss_pred HHHHHHhhcCCHHHHHHHHHHHHHhh
Q 036199 633 PSLVKISVYGNDKAKVSALELRRLLR 658 (710)
Q Consensus 633 ~~Lv~L~~~gt~~~k~kA~~LL~~l~ 658 (710)
++|+.|+..++.+.|+.|.++|.++.
T Consensus 657 ~lLV~Ll~s~D~~~r~AAagALAnLt 682 (778)
T 3opb_A 657 NILVKLLQLSDVESQRAVAAIFANIA 682 (778)
T ss_dssp HHHHHGGGCSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHhc
Confidence 89999999999999999999999884
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=99.74 E-value=1e-18 Score=182.56 Aligned_cols=77 Identities=29% Similarity=0.418 Sum_probs=72.5
Q ss_pred cCCCCCcccccCCccccCCceecCCCCccchhhHHHHhhhCCCCCCCCCCccCCCCCcccHHHHHHHHHHHHHcCCC
Q 036199 262 RAIIPEVFKCPLSLRLMYDPVVIESGQTFERMWIQKWFEEGNHTCPKTKMKLVCQSLTPNTAMKDLISKWCMNLCSS 338 (710)
Q Consensus 262 ~~~~p~~f~CPI~~~~m~DPV~~~~G~ty~r~~I~~w~~~g~~~cP~t~~~l~~~~l~pN~~l~~~i~~w~~~~~~~ 338 (710)
...+|++|.||||+++|+|||+++|||||||.||++|+..++.+||.|+++++...++||..|+++|+.|+..||+.
T Consensus 202 ~~~~~~~~~c~i~~~~~~dPv~~~~gh~f~~~~i~~~~~~~~~~cP~~~~~~~~~~l~~n~~l~~~i~~~~~~~~~~ 278 (281)
T 2c2l_A 202 KRDIPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQEQLIPNLAMKEVIDAFISENGWV 278 (281)
T ss_dssp CCCCCSTTBCTTTCSBCSSEEECSSCCEEETTHHHHHHHHTCSSCTTTCCCCCGGGCEECHHHHHHHHHHHTTCSCS
T ss_pred CCCCCcccCCcCcCCHhcCCeECCCCCEECHHHHHHHHHHCCCCCcCCCCCCchhcCcccHHHHHHHHHHHHHCCCC
Confidence 35689999999999999999999999999999999999987778999999999999999999999999999999864
|
| >2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.73 E-value=9.2e-19 Score=152.83 Aligned_cols=72 Identities=22% Similarity=0.349 Sum_probs=64.9
Q ss_pred CCCcccccCCccccCCceecC-CCCccchhhHHHHhhhC-----CCCCCCCCCc---cCCCCCcccHHHHHHHHHHHHHc
Q 036199 265 IPEVFKCPLSLRLMYDPVVIE-SGQTFERMWIQKWFEEG-----NHTCPKTKMK---LVCQSLTPNTAMKDLISKWCMNL 335 (710)
Q Consensus 265 ~p~~f~CPI~~~~m~DPV~~~-~G~ty~r~~I~~w~~~g-----~~~cP~t~~~---l~~~~l~pN~~l~~~i~~w~~~~ 335 (710)
.+++|.||||+++|+|||+++ |||||||.||++||..+ ..+||+|+.+ +....|+||..|+++|+.|+..+
T Consensus 4 ~~~~~~CPI~~~~~~dPV~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~~l~~~~L~pn~~L~~~I~~~~~~~ 83 (94)
T 2yu4_A 4 GSSGFTCPITKEEMKKPVKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHTDIRKSDLIQDEALRRAIENHNKKR 83 (94)
T ss_dssp CSSCCBCTTTCSBCSSEEEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCCCBCGGGEEECHHHHHHHHHHHTTC
T ss_pred CCcEeECcCcCchhcCCEEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCcccccCHhhCcCCHHHHHHHHHHHHHh
Confidence 478999999999999999996 99999999999999853 4689996655 88889999999999999999887
Q ss_pred C
Q 036199 336 C 336 (710)
Q Consensus 336 ~ 336 (710)
+
T Consensus 84 ~ 84 (94)
T 2yu4_A 84 H 84 (94)
T ss_dssp C
T ss_pred c
Confidence 6
|
| >1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=4.6e-17 Score=171.74 Aligned_cols=217 Identities=15% Similarity=0.152 Sum_probs=174.2
Q ss_pred CHHHHHHHHHHHHHHhccCCCCCccccccchHHHHH-HhccCcH--HHHHHHHHHHhcc-CchhhHHHhhhCcHHHHHHh
Q 036199 440 DSRAQRIGCRLLLAFVSKNRSGIPYLNEDLFSLLAS-FLHSAAA--TEETLAILVALSS-YAYFISKIVASGALASILNM 515 (710)
Q Consensus 440 d~~~q~~A~~~L~nL~~~~~~k~~i~~~gaI~~LV~-lL~s~~~--~~~Aa~~L~~Ls~-~~~nk~~I~~~GaI~~LV~L 515 (710)
+.+.+..|+..|.+++.+..+...+...|+++.|+. +|.+++. ++.|+++|.+++. ++.++..+++.|++|+|+.+
T Consensus 53 ~~e~k~~Al~~L~~lv~~~dna~~~~~~G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~L 132 (296)
T 1xqr_A 53 DQQEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRL 132 (296)
T ss_dssp HHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhChhhHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHH
Confidence 456677888888888776556666678999999999 9999876 3799999999985 56788899999999999999
Q ss_pred hcC-CCHHHHHHHHHHHHHhccC-cccccccccccchhchHHhhcC--chHHHHHHHHHHHHhc-CcchHHHHHhhcCCh
Q 036199 516 LDS-PNGKFQELAIKILHNLSSD-VDIQSHIAPSEFLPKLVPFLKD--ATLAVSCLVILKNMCN-TEHARVCVVETSGCL 590 (710)
Q Consensus 516 L~~-~~~~~~~~A~~aL~nLs~~-~en~~~iv~aG~V~~Lv~lL~~--~~~~~~al~iL~nLa~-~~e~r~~i~~~~g~I 590 (710)
|.+ .++.+++.|++||.||+.+ +.+...++++|+++.|+.+|.+ ..++..|+++|.+|+. .++.+..+++ .|++
T Consensus 133 L~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~~~~~~~~vv~-~g~i 211 (296)
T 1xqr_A 133 LDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCS-MGMV 211 (296)
T ss_dssp HHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHH-TTHH
T ss_pred HccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCChHHHHHHHH-cCCH
Confidence 985 4789999999999999975 5566778889999999999965 4679999999999987 5778889998 7999
Q ss_pred HHHHHHhhcCCHHHHHHHHHHHHHHhcCChHHHHHHHhCC-chHHHH----HHhh--cCCHHHHHHHHHHHHHh
Q 036199 591 PSVAELLEIGSEEDQEHAVAILLCLCSQRDQYCKLVMNEG-VIPSLV----KISV--YGNDKAKVSALELRRLL 657 (710)
Q Consensus 591 ~~Lv~lL~~~s~~~ke~A~~aL~~Lc~~~~~~~~~v~~~G-~v~~Lv----~L~~--~gt~~~k~kA~~LL~~l 657 (710)
+.|+.+|.++++..++.|+.+|.+|....+.........+ .+..++ +-++ .......++|..++..+
T Consensus 212 ~~Lv~LL~~~d~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~l~~lL~~~~~~lq~~e~~~e~~~~~~~il~~~ 285 (296)
T 1xqr_A 212 QQLVALVRTEHSPFHEHVLGALCSLVTDFPQGVRECREPELGLEELLRHRCQLLQQHEEYQEELEFCEKLLQTC 285 (296)
T ss_dssp HHHHHHHTSCCSTHHHHHHHHHHHHHTTCHHHHHHHHCGGGCHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCChhHHHHHHHHHHHHHhCChhHHHHHhccHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999998644333332211 122222 2122 22467788898888844
|
| >3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A | Back alignment and structure |
|---|
Probab=99.63 E-value=8.6e-17 Score=187.99 Aligned_cols=74 Identities=24% Similarity=0.371 Sum_probs=70.3
Q ss_pred cCCCCCcccccCCccccCCceecCCC-CccchhhHHHHhhhCCCCCCCCCCccCCCCCcccHHHHHHHHHHHHHcC
Q 036199 262 RAIIPEVFKCPLSLRLMYDPVVIESG-QTFERMWIQKWFEEGNHTCPKTKMKLVCQSLTPNTAMKDLISKWCMNLC 336 (710)
Q Consensus 262 ~~~~p~~f~CPI~~~~m~DPV~~~~G-~ty~r~~I~~w~~~g~~~cP~t~~~l~~~~l~pN~~l~~~i~~w~~~~~ 336 (710)
...+|++|+|||++++|+|||++++| +||||.+|++|+.. +.|||.|+++|++..++||++||+.|++||..++
T Consensus 885 ~~~iP~~F~cPIs~~lM~DPVilpsG~~TydR~~I~~wl~~-~~tdP~Tr~~L~~~~liPN~~Lk~~I~~w~~~~~ 959 (968)
T 3m62_A 885 YGDVPDEFLDPLMYTIMKDPVILPASKMNIDRSTIKAHLLS-DSTDPFNRMPLKLEDVTPNEELRQKILCFKKQKK 959 (968)
T ss_dssp HCCSCGGGBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHTT-CCBCTTTCCBCCGGGCEECHHHHHHHHHHHHHHH
T ss_pred ccCCcHHhCCcchhhHHhCCeEcCCCCEEECHHHHHHHHhc-CCCCCCCCCCCCcccccccHHHHHHHHHHHHHHH
Confidence 47899999999999999999999998 79999999999986 6799999999999999999999999999999986
|
| >2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A | Back alignment and structure |
|---|
Probab=99.60 E-value=1.8e-16 Score=126.49 Aligned_cols=55 Identities=18% Similarity=0.330 Sum_probs=50.3
Q ss_pred cccccCCccccCCceec-CCCCccchhhHHHHhhhCCCCCCCCCCccCCCCCcccHH
Q 036199 268 VFKCPLSLRLMYDPVVI-ESGQTFERMWIQKWFEEGNHTCPKTKMKLVCQSLTPNTA 323 (710)
Q Consensus 268 ~f~CPI~~~~m~DPV~~-~~G~ty~r~~I~~w~~~g~~~cP~t~~~l~~~~l~pN~~ 323 (710)
.|.||||+++|+|||++ +|||||||.+|++|+.. +.+||+|+++|...+|+||+.
T Consensus 3 ~~~CpIs~~~m~dPV~~~~sG~~yer~~I~~~l~~-~~~cP~t~~~L~~~~Lip~~~ 58 (61)
T 2bay_A 3 HMLCAISGKVPRRPVLSPKSRTIFEKSLLEQYVKD-TGNDPITNEPLSIEEIVEIVP 58 (61)
T ss_dssp -CCCTTTCSCCSSEEEETTTTEEEEHHHHHHHHHH-HSBCTTTCCBCCGGGCEECCC
T ss_pred eEEecCCCCCCCCCEEeCCCCcEEcHHHHHHHHHh-CCCCcCCcCCCChhhcEECcc
Confidence 58999999999999999 99999999999999986 457999999999999999853
|
| >3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.55 E-value=7.6e-15 Score=127.29 Aligned_cols=75 Identities=23% Similarity=0.375 Sum_probs=67.8
Q ss_pred CCCCCcccccCCccccCCceecC-CCCccchhhHHHHhhh-CCCCCCCCCCcc-CCCCCcccHHHHHHHHHHHHHcCC
Q 036199 263 AIIPEVFKCPLSLRLMYDPVVIE-SGQTFERMWIQKWFEE-GNHTCPKTKMKL-VCQSLTPNTAMKDLISKWCMNLCS 337 (710)
Q Consensus 263 ~~~p~~f~CPI~~~~m~DPV~~~-~G~ty~r~~I~~w~~~-g~~~cP~t~~~l-~~~~l~pN~~l~~~i~~w~~~~~~ 337 (710)
..++++|.||||+++|.|||+++ |||+||+.||.+|+.. +..+||.|++++ ....+.||+.++++|+.|...+++
T Consensus 8 ~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~~~~~n~~l~~~i~~~~~~~~~ 85 (92)
T 3ztg_A 8 DPIPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSPDALIANKFLRQAVNNFKNETGY 85 (92)
T ss_dssp CCCCTTTEETTTTEECSSCEECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSSCCTTSCEECHHHHHHHHHHHHHHTC
T ss_pred ccCCcCCCCCCCChhhcCceECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcCCCccccCcCHHHHHHHHHHHHHHhH
Confidence 35788999999999999999999 9999999999999974 557999999997 566899999999999999998764
|
| >3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.53 E-value=1.4e-14 Score=146.40 Aligned_cols=71 Identities=15% Similarity=0.280 Sum_probs=64.5
Q ss_pred CCCCcccccCCccccCCceec-CCCCccchhhHHHHhhh-CCCCCCC--CCCccCCCCCcccHHHHHHHHHHHHH
Q 036199 264 IIPEVFKCPLSLRLMYDPVVI-ESGQTFERMWIQKWFEE-GNHTCPK--TKMKLVCQSLTPNTAMKDLISKWCMN 334 (710)
Q Consensus 264 ~~p~~f~CPI~~~~m~DPV~~-~~G~ty~r~~I~~w~~~-g~~~cP~--t~~~l~~~~l~pN~~l~~~i~~w~~~ 334 (710)
....+|.||||+++|+|||+. .|||+|||.||++||.. |..+||+ |++++....|+||..|+++|+.|..+
T Consensus 177 ~~~~el~CPIcl~~f~DPVts~~CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~~~dL~pN~~L~~lve~~k~r 251 (267)
T 3htk_C 177 GGKIELTCPITCKPYEAPLISRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVSMRDFVRDPIMELRCKIAKMK 251 (267)
T ss_dssp SSBCCSBCTTTSSBCSSEEEESSSCCEEEHHHHHHHSTTCSCEECSGGGCSCEECGGGEEECHHHHHHHHHHHHH
T ss_pred CCceeeECcCccCcccCCeeeCCCCCcccHHHHHHHHHhCCCCCCCcccccCcCchhhCCcCHHHHHHHHHHHHH
Confidence 356789999999999999985 99999999999999986 4568999 88999999999999999999999775
|
| >3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.43 E-value=5.6e-14 Score=128.83 Aligned_cols=69 Identities=14% Similarity=0.371 Sum_probs=63.6
Q ss_pred CCCcccccCCccccCCceecCCCCccchhhHHHHhhhCCCCCCCCCCccCC-CCCcccHHHHHHHHHHHH
Q 036199 265 IPEVFKCPLSLRLMYDPVVIESGQTFERMWIQKWFEEGNHTCPKTKMKLVC-QSLTPNTAMKDLISKWCM 333 (710)
Q Consensus 265 ~p~~f~CPI~~~~m~DPV~~~~G~ty~r~~I~~w~~~g~~~cP~t~~~l~~-~~l~pN~~l~~~i~~w~~ 333 (710)
++++|.||||+++|.|||+++|||+||+.||.+|+..+..+||.|++++.. ..+.||+.|+++|+.|.-
T Consensus 49 ~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~n~~l~~~i~~~~p 118 (124)
T 3fl2_A 49 VEETFQCICCQELVFRPITTVCQHNVCKDCLDRSFRAQVFSCPACRYDLGRSYAMQVNQPLQTVLNQLFP 118 (124)
T ss_dssp HHHHTBCTTTSSBCSSEEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTTCCCCCCHHHHHHHHHHST
T ss_pred CccCCCCCcCChHHcCcEEeeCCCcccHHHHHHHHhHCcCCCCCCCccCCCCCCCCCCHHHHHHHHHHcc
Confidence 467899999999999999999999999999999998777799999999987 789999999999998854
|
| >1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.39 E-value=1.5e-13 Score=130.22 Aligned_cols=69 Identities=22% Similarity=0.424 Sum_probs=64.0
Q ss_pred CCCcccccCCccccCCceecCCCCccchhhHHHHhhhCCCCCCCCCCccCCC-CCcccHHHHHHHHHHHH
Q 036199 265 IPEVFKCPLSLRLMYDPVVIESGQTFERMWIQKWFEEGNHTCPKTKMKLVCQ-SLTPNTAMKDLISKWCM 333 (710)
Q Consensus 265 ~p~~f~CPI~~~~m~DPV~~~~G~ty~r~~I~~w~~~g~~~cP~t~~~l~~~-~l~pN~~l~~~i~~w~~ 333 (710)
++++|.||||+++|.|||+++|||+||+.||.+|+..+..+||.|++++... .+.+|..|+++|+.|..
T Consensus 75 l~~~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~l~~n~~l~~lv~~~~p 144 (150)
T 1z6u_A 75 LEQSFMCVCCQELVYQPVTTECFHNVCKDCLQRSFKAQVFSCPACRHDLGQNYIMIPNEILQTLLDLFFP 144 (150)
T ss_dssp HHHHTBCTTTSSBCSSEEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTTCCCCBCHHHHHHHHHHST
T ss_pred CccCCEeecCChhhcCCEEcCCCCchhHHHHHHHHHhCCCcCCCCCccCCCCCCCCCCHHHHHHHHHHhh
Confidence 4678999999999999999999999999999999997777999999999887 89999999999998863
|
| >2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.30 E-value=1.4e-12 Score=114.61 Aligned_cols=70 Identities=14% Similarity=0.409 Sum_probs=64.3
Q ss_pred CCCcccccCCccccCCceec-CCCCccchhhHHHHhhhCCCCCCCCCCccCCCCCcccHHHHHHHHHHHHHc
Q 036199 265 IPEVFKCPLSLRLMYDPVVI-ESGQTFERMWIQKWFEEGNHTCPKTKMKLVCQSLTPNTAMKDLISKWCMNL 335 (710)
Q Consensus 265 ~p~~f~CPI~~~~m~DPV~~-~~G~ty~r~~I~~w~~~g~~~cP~t~~~l~~~~l~pN~~l~~~i~~w~~~~ 335 (710)
+++++.||||++.|.|||++ +|||+||+.||.+|+.. ..+||.|++++....+.||+.++++|+.|....
T Consensus 19 ~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~~~~l~~n~~l~~~i~~~~~~~ 89 (99)
T 2y43_A 19 IDDLLRCGICFEYFNIAMIIPQCSHNYCSLCIRKFLSY-KTQCPTCCVTVTEPDLKNNRILDELVKSLNFAR 89 (99)
T ss_dssp HHHHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHTT-CCBCTTTCCBCCGGGCEECHHHHHHHHHHHHHH
T ss_pred CCCCCCcccCChhhCCcCEECCCCCHhhHHHHHHHHHC-CCCCCCCCCcCChhhCCcCHHHHHHHHHHHHHH
Confidence 46789999999999999998 89999999999999984 578999999998888999999999999998764
|
| >3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A | Back alignment and structure |
|---|
Probab=99.28 E-value=9e-11 Score=133.01 Aligned_cols=263 Identities=14% Similarity=0.213 Sum_probs=200.9
Q ss_pred hhhcCC-CHHHHHHHHHHHHHHHccCcccchhcccCCcHHHHHHHhhccccCCCHHHHHHHHHHHHHHhccCCC----C-
Q 036199 388 SRLTEL-NWDCQCKVIEDYETRLEHDNQVSHSLSSTNFVEPLIRFLRDARDLHDSRAQRIGCRLLLAFVSKNRS----G- 461 (710)
Q Consensus 388 ~~L~s~-~~e~q~~Al~~L~~Lak~~~~~r~~I~~~G~I~~LV~lL~s~~~~~d~~~q~~A~~~L~nL~~~~~~----k- 461 (710)
.+|.+. -.+.++.|+..|+.++++ ++.. +..++++.|+..|+.+ ..|.++.+.++..|+++...+.. .
T Consensus 28 ~Rl~~~tl~eDRR~Av~~Lk~~sk~---y~~~-Vg~~~l~~li~~L~~d--~~D~e~v~~~LetL~~l~~~~~~~~~~~~ 101 (651)
T 3grl_A 28 DRVASSTLLDDRRNAVRALKSLSKK---YRLE-VGIQAMEHLIHVLQTD--RSDSEIIGYALDTLYNIISNDEEEEVEEN 101 (651)
T ss_dssp HHHHHCCSHHHHHHHHHHHHHTTTT---TTTH-HHHHTHHHHHHHHHSC--TTCHHHHHHHHHHHHHHHCCC--------
T ss_pred HHHhhccchhHHHHHHHHHHHHHHH---hHHH-hhhhhHHHHHHHHhcc--cccHHHHHHHHHHHHHHhCCCCccccccc
Confidence 344433 467899999999999864 3333 3467899999999884 47899999999999998543211 0
Q ss_pred --------------CccccccchHHHHHHhccCcHH--HHHHHHHHHhccC--chhhHHHh-hhCcHHHHHHhhcCCCHH
Q 036199 462 --------------IPYLNEDLFSLLASFLHSAAAT--EETLAILVALSSY--AYFISKIV-ASGALASILNMLDSPNGK 522 (710)
Q Consensus 462 --------------~~i~~~gaI~~LV~lL~s~~~~--~~Aa~~L~~Ls~~--~~nk~~I~-~~GaI~~LV~LL~~~~~~ 522 (710)
..+.+.+.|+.|+.+|++.+.. -+++..|..|+.. ..+...|. ..++|+.||++|.+....
T Consensus 102 ~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d~rE~ 181 (651)
T 3grl_A 102 STRQSEDLGSQFTEIFIKQQENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLADSREV 181 (651)
T ss_dssp ------CHHHHHHHHHHHSTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGGCSSHH
T ss_pred ccccchHHHHHHHHHHHcCCccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHhCchHH
Confidence 1123578899999999988753 5899999988843 33788888 469999999999999999
Q ss_pred HHHHHHHHHHHhccCccccccccc-ccchhchHHhhcC------chHHHHHHHHHHHHhc-CcchHHHHHhhcCChHHHH
Q 036199 523 FQELAIKILHNLSSDVDIQSHIAP-SEFLPKLVPFLKD------ATLAVSCLVILKNMCN-TEHARVCVVETSGCLPSVA 594 (710)
Q Consensus 523 ~~~~A~~aL~nLs~~~en~~~iv~-aG~V~~Lv~lL~~------~~~~~~al~iL~nLa~-~~e~r~~i~~~~g~I~~Lv 594 (710)
.+-.|+..|.+|+.+..+..+++. .|+++.|+.++.+ +.++..|+.+|.||.. ++.++..+.+ .|+++.|+
T Consensus 182 iRneallLL~~Lt~~n~~iQklVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ~~FrE-t~~i~~L~ 260 (651)
T 3grl_A 182 IRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQNLLKNNNSNQNFFKE-GSYIQRMK 260 (651)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHTTCHHHHHHHHH-TTCGGGGG
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHhccHHHHHHHHHhcCCCccchhHHHHHHHHHHHHhcCHHHHHHHHH-cCCHHHHH
Confidence 999999999999998777777766 6999999999943 2358999999999998 5668888888 79999999
Q ss_pred HHhhcCC------HHHHHH---HHHHHHHHhcCC------hHHHHHHHhCCchHHHHHHhhcC--CHHHHHHHHHHHHHh
Q 036199 595 ELLEIGS------EEDQEH---AVAILLCLCSQR------DQYCKLVMNEGVIPSLVKISVYG--NDKAKVSALELRRLL 657 (710)
Q Consensus 595 ~lL~~~s------~~~ke~---A~~aL~~Lc~~~------~~~~~~v~~~G~v~~Lv~L~~~g--t~~~k~kA~~LL~~l 657 (710)
.+|..+. +..-.+ ++.++.-|+..+ ..++..+.+.|+++.|+.++... ....+..|...+..+
T Consensus 261 ~LL~~~~~~~~W~~Qk~~N~~~~L~iIrlLv~~~~~~~~t~~nQ~~~~~~g~l~~Ll~ll~~~~~p~~i~~~Al~tla~~ 340 (651)
T 3grl_A 261 PWFEVGDENSGWSAQKVTNLHLMLQLVRVLVSPNNPPGATSSCQKAMFQCGLLQQLCTILMATGVPADILTETINTVSEV 340 (651)
T ss_dssp GGGCCCSCSSCCCHHHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHTTHHHHHHHHHTCSSCCHHHHHHHHHHHHHH
T ss_pred HHhCCCccccccHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHCCCHHHHHHHHccCCCCHHHHHHHHHHHHHH
Confidence 9997542 222334 556666666652 35788999999999999997654 456776676666543
|
| >2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A | Back alignment and structure |
|---|
Probab=99.26 E-value=2.2e-12 Score=115.25 Aligned_cols=68 Identities=18% Similarity=0.374 Sum_probs=61.2
Q ss_pred CCCCcccccCCccccCCceec-CCCCccchhhHHHHhhhCCCCCCCCCCccCCC----CCcccHHHHHHHHHHH
Q 036199 264 IIPEVFKCPLSLRLMYDPVVI-ESGQTFERMWIQKWFEEGNHTCPKTKMKLVCQ----SLTPNTAMKDLISKWC 332 (710)
Q Consensus 264 ~~p~~f~CPI~~~~m~DPV~~-~~G~ty~r~~I~~w~~~g~~~cP~t~~~l~~~----~l~pN~~l~~~i~~w~ 332 (710)
.+++++.||||+++|.|||++ +|||+||+.||.+|+..+ .+||.|++++... .+.+|..+.++|+.|.
T Consensus 11 ~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~-~~CP~Cr~~~~~~~~~~~l~~n~~l~~~i~~~~ 83 (108)
T 2ckl_A 11 ELNPHLMCVLCGGYFIDATTIIECLHSFCKTCIVRYLETS-KYCPICDVQVHKTRPLLNIRSDKTLQDIVYKLV 83 (108)
T ss_dssp HHGGGTBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHTSC-SBCTTTCCBSCSSCGGGGEEECHHHHHHHHHHS
T ss_pred ccCCcCCCccCChHHhCcCEeCCCCChhhHHHHHHHHHhC-CcCcCCCccccccCcccccCcCHHHHHHHHHHh
Confidence 356789999999999999998 999999999999999864 7899999998865 6889999999998873
|
| >2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.26 E-value=2.8e-13 Score=113.67 Aligned_cols=64 Identities=22% Similarity=0.508 Sum_probs=57.0
Q ss_pred CCCCcccccCCccccCCceecCCCCccchhhHHHHhhhC------CCCCCCCCCccCCCCCcccHHHHHH
Q 036199 264 IIPEVFKCPLSLRLMYDPVVIESGQTFERMWIQKWFEEG------NHTCPKTKMKLVCQSLTPNTAMKDL 327 (710)
Q Consensus 264 ~~p~~f~CPI~~~~m~DPV~~~~G~ty~r~~I~~w~~~g------~~~cP~t~~~l~~~~l~pN~~l~~~ 327 (710)
.+.+++.||||++.|.|||+++|||+||+.||.+|+... ..+||.|++++....+.||+.|+++
T Consensus 8 ~~~~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~~~l~~n~~l~~l 77 (79)
T 2egp_A 8 NVQEEVTCPICLELLTEPLSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSFEHLQANQHLANI 77 (79)
T ss_dssp CCCCCCEETTTTEECSSCCCCSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCSSGGGTCSSSCCC
T ss_pred hcccCCCCcCCCcccCCeeECCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCHhhCCcCHHHHHh
Confidence 457789999999999999999999999999999999753 6789999999998889999776554
|
| >3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.25 E-value=1.8e-12 Score=117.12 Aligned_cols=68 Identities=16% Similarity=0.331 Sum_probs=61.9
Q ss_pred CCCcccccCCccccCCceecCCCCccchhhHHHHhhhCCCCCCCCCCccCC-------CCCcccHHHHHHHHHHH
Q 036199 265 IPEVFKCPLSLRLMYDPVVIESGQTFERMWIQKWFEEGNHTCPKTKMKLVC-------QSLTPNTAMKDLISKWC 332 (710)
Q Consensus 265 ~p~~f~CPI~~~~m~DPV~~~~G~ty~r~~I~~w~~~g~~~cP~t~~~l~~-------~~l~pN~~l~~~i~~w~ 332 (710)
..++|.||||+++|.+||+++|||+||+.||.+|+..+..+||.|++++.. ..+.+|..|...|+.|.
T Consensus 12 ~~~~~~C~iC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~~~n~~l~~~i~~~~ 86 (115)
T 3l11_A 12 SLSECQCGICMEILVEPVTLPCNHTLCKPCFQSTVEKASLCCPFCRRRVSSWTRYHTRRNSLVNVELWTIIQKHY 86 (115)
T ss_dssp CHHHHBCTTTCSBCSSCEECTTSCEECHHHHCCCCCTTTSBCTTTCCBCHHHHHHHHHTTCCBCHHHHHHHHHHS
T ss_pred CCCCCCCccCCcccCceeEcCCCCHHhHHHHHHHHhHCcCCCCCCCcccCccccccccccchhhHHHHHHHHHHC
Confidence 456799999999999999999999999999999998878899999998864 56788999999999985
|
| >1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1 | Back alignment and structure |
|---|
Probab=99.25 E-value=3.6e-12 Score=115.57 Aligned_cols=68 Identities=15% Similarity=0.288 Sum_probs=62.9
Q ss_pred CCCcccccCCccccCCceec-CCCCccchhhHHHHhhhCCCCCCCCCCccCCCCCcccHHHHHHHHHHHHHc
Q 036199 265 IPEVFKCPLSLRLMYDPVVI-ESGQTFERMWIQKWFEEGNHTCPKTKMKLVCQSLTPNTAMKDLISKWCMNL 335 (710)
Q Consensus 265 ~p~~f~CPI~~~~m~DPV~~-~~G~ty~r~~I~~w~~~g~~~cP~t~~~l~~~~l~pN~~l~~~i~~w~~~~ 335 (710)
+.++|.||||+++|.|||++ +|||+||+.||.+|+. ..||.|+.++....+.||+.|+++|+.|....
T Consensus 19 l~~~~~C~IC~~~~~~pv~~~~CgH~fC~~Ci~~~~~---~~CP~Cr~~~~~~~~~~n~~l~~l~~~~~~~~ 87 (117)
T 1jm7_B 19 LEKLLRCSRCTNILREPVCLGGCEHIFCSNCVSDCIG---TGCPVCYTPAWIQDLKINRQLDSMIQLCSKLR 87 (117)
T ss_dssp HHHTTSCSSSCSCCSSCBCCCSSSCCBCTTTGGGGTT---TBCSSSCCBCSCSSCCCCHHHHHHHHHHHHHH
T ss_pred chhCCCCCCCChHhhCccEeCCCCCHHHHHHHHHHhc---CCCcCCCCcCccccccccHHHHHHHHHHHHHH
Confidence 46789999999999999999 9999999999999997 68999999998889999999999999987654
|
| >2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus} | Back alignment and structure |
|---|
Probab=99.24 E-value=1.4e-12 Score=110.84 Aligned_cols=66 Identities=27% Similarity=0.596 Sum_probs=58.1
Q ss_pred CCCCCcccccCCccccCCceecCCCCccchhhHHHHhhh-----CCCCCCCCCCccCCCCCcccHHHHHHH
Q 036199 263 AIIPEVFKCPLSLRLMYDPVVIESGQTFERMWIQKWFEE-----GNHTCPKTKMKLVCQSLTPNTAMKDLI 328 (710)
Q Consensus 263 ~~~p~~f~CPI~~~~m~DPV~~~~G~ty~r~~I~~w~~~-----g~~~cP~t~~~l~~~~l~pN~~l~~~i 328 (710)
..+.++|.||||++.|.+||+++|||+||+.||.+|+.. +..+||.|++++....+.||+.++++|
T Consensus 14 ~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~n~~l~~~v 84 (85)
T 2ecw_A 14 EMIKEEVTCPICLELLKEPVSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPFGNLKPNLHVANIV 84 (85)
T ss_dssp CCCCTTTSCTTTCSCCSSCEECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCTTCCEECSCCCSSC
T ss_pred HhCccCCCCcCCChhhCcceeCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCHHhCCcCHHHHHhh
Confidence 346778999999999999999999999999999999986 377899999999988999997765543
|
| >3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A | Back alignment and structure |
|---|
Probab=99.24 E-value=3.8e-12 Score=115.54 Aligned_cols=69 Identities=23% Similarity=0.420 Sum_probs=63.6
Q ss_pred CCCCCcccccCCccccCCceecCCCCccchhhHHHHhhhCCCCCCCCCCccCCCCCcccHHHHHHHHHH
Q 036199 263 AIIPEVFKCPLSLRLMYDPVVIESGQTFERMWIQKWFEEGNHTCPKTKMKLVCQSLTPNTAMKDLISKW 331 (710)
Q Consensus 263 ~~~p~~f~CPI~~~~m~DPV~~~~G~ty~r~~I~~w~~~g~~~cP~t~~~l~~~~l~pN~~l~~~i~~w 331 (710)
..++++|.||||+++|.|||+++|||+||+.||.+|+..+..+||.|+.++....+.||..+++.|.++
T Consensus 13 ~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~l~~~i~~l 81 (118)
T 3hct_A 13 PPLESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLFPDNFAKREILSL 81 (118)
T ss_dssp SCCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGGGCEECHHHHHHHHTS
T ss_pred cCCCCCCCCCcCChhhcCeEECCcCChhhHHHHHHHHhhCCCCCCCCCCCcCHHhcccCHHHHHHHccc
Confidence 356788999999999999999999999999999999987767999999999988899999999999874
|
| >3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.24 E-value=2.8e-12 Score=112.93 Aligned_cols=72 Identities=18% Similarity=0.325 Sum_probs=64.4
Q ss_pred CCCCcccccCCccccCCcee-cCCCCccchhhHHHHhhhCCCCCCCCCCccCCCCCcccHHHHHHHHHHHHHc
Q 036199 264 IIPEVFKCPLSLRLMYDPVV-IESGQTFERMWIQKWFEEGNHTCPKTKMKLVCQSLTPNTAMKDLISKWCMNL 335 (710)
Q Consensus 264 ~~p~~f~CPI~~~~m~DPV~-~~~G~ty~r~~I~~w~~~g~~~cP~t~~~l~~~~l~pN~~l~~~i~~w~~~~ 335 (710)
.+.++|.||||+++|.|||+ ++|||+||+.||.+|+.....+||.|+.++....+++|+.+..+++..-...
T Consensus 18 ~l~~~~~C~IC~~~~~~p~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~~l~~~~~~~~i~~~~~~l~ 90 (100)
T 3lrq_A 18 SIAEVFRCFICMEKLRDARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQLRELVNCRWAEEVTQQLDTLQ 90 (100)
T ss_dssp HHHHHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCEECTTHHHHHHHHHHHC
T ss_pred cCCCCCCCccCCccccCccccCCCCChhhHHHHHHHHHHCcCCCCCCCCcCCHHHhHhhHHHHHHHHHHHHHH
Confidence 35678999999999999999 9999999999999999976679999999999889999999998888765543
|
| >2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B | Back alignment and structure |
|---|
Probab=99.23 E-value=3.4e-12 Score=122.91 Aligned_cols=70 Identities=29% Similarity=0.484 Sum_probs=62.6
Q ss_pred CCCCcccccCCccccCCceec-CCCCccchhhHHHHhhhCCCCCCCCCCccCC-CCCcccHHHHHHHHHHHH
Q 036199 264 IIPEVFKCPLSLRLMYDPVVI-ESGQTFERMWIQKWFEEGNHTCPKTKMKLVC-QSLTPNTAMKDLISKWCM 333 (710)
Q Consensus 264 ~~p~~f~CPI~~~~m~DPV~~-~~G~ty~r~~I~~w~~~g~~~cP~t~~~l~~-~~l~pN~~l~~~i~~w~~ 333 (710)
.+.+++.||||++.|.|||++ +|||+||+.||.+|+..++.+||.|+.++.. ..+.||..+.++|..|..
T Consensus 50 ~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~l~~~~~l~~~i~~~~~ 121 (165)
T 2ckl_B 50 SLHSELMCPICLDMLKNTMTTKECLHRFCADCIITALRSGNKECPTCRKKLVSKRSLRPDPNFDALISKIYP 121 (165)
T ss_dssp CCHHHHBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHHTTCCBCTTTCCBCCSGGGEEECHHHHHHHHHHC-
T ss_pred hCCCCCCCcccChHhhCcCEeCCCCChhHHHHHHHHHHhCcCCCCCCCCcCCCcccCCcCHHHHHHHHHHHc
Confidence 345779999999999999998 9999999999999999888899999999854 569999999999999844
|
| >2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.22 E-value=1.2e-11 Score=102.54 Aligned_cols=60 Identities=28% Similarity=0.455 Sum_probs=50.8
Q ss_pred cCCCCCcccccCCccccCCceecC-CCCccchhhHHHHhhh-CCCCCCCCCCccC-CCCCccc
Q 036199 262 RAIIPEVFKCPLSLRLMYDPVVIE-SGQTFERMWIQKWFEE-GNHTCPKTKMKLV-CQSLTPN 321 (710)
Q Consensus 262 ~~~~p~~f~CPI~~~~m~DPV~~~-~G~ty~r~~I~~w~~~-g~~~cP~t~~~l~-~~~l~pN 321 (710)
...+++++.||||+++|.|||+++ |||+||+.||.+|+.. +..+||.|++++. ...+.+|
T Consensus 9 ~~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~~~~~n 71 (74)
T 2yur_A 9 DDPIPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSPDALSGP 71 (74)
T ss_dssp CCCSCGGGSCSSSCCCCTTCEECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSCCTTTTTCT
T ss_pred cccCCCCCCCcCCChHHhCCeEcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCCCccccccC
Confidence 345788999999999999999999 9999999999999985 4478999999754 4456666
|
| >2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.22 E-value=2.2e-12 Score=109.54 Aligned_cols=65 Identities=20% Similarity=0.566 Sum_probs=57.6
Q ss_pred CCCCCcccccCCccccCCceecCCCCccchhhHHHHhhh-----CCCCCCCCCCccCCCCCcccHHHHHH
Q 036199 263 AIIPEVFKCPLSLRLMYDPVVIESGQTFERMWIQKWFEE-----GNHTCPKTKMKLVCQSLTPNTAMKDL 327 (710)
Q Consensus 263 ~~~p~~f~CPI~~~~m~DPV~~~~G~ty~r~~I~~w~~~-----g~~~cP~t~~~l~~~~l~pN~~l~~~ 327 (710)
..+.+++.||||++.+.||++++|||+||+.||.+|+.. +..+||.|++++....+.||+.|+++
T Consensus 14 ~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~n~~l~~~ 83 (85)
T 2ecv_A 14 VNVKEEVTCPICLELLTQPLSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQPENIRPNRHVANI 83 (85)
T ss_dssp CCCCCCCCCTTTCSCCSSCBCCSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCSSSCCCSCCCCCC
T ss_pred HHccCCCCCCCCCcccCCceeCCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCHHhcCccHHHHHh
Confidence 356778999999999999999999999999999999975 47789999999998889999776544
|
| >2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.20 E-value=6.7e-12 Score=105.94 Aligned_cols=64 Identities=14% Similarity=0.206 Sum_probs=55.2
Q ss_pred CCCCcccccCCccccCCceecCCCCccchhhHHHHhhhCCCCCCCCCCccCCCCCcccHHHHHHHH
Q 036199 264 IIPEVFKCPLSLRLMYDPVVIESGQTFERMWIQKWFEEGNHTCPKTKMKLVCQSLTPNTAMKDLIS 329 (710)
Q Consensus 264 ~~p~~f~CPI~~~~m~DPV~~~~G~ty~r~~I~~w~~~g~~~cP~t~~~l~~~~l~pN~~l~~~i~ 329 (710)
...+++.||||++.|.|||+++|||+||+.||.+|+.. ..+||.|++++. ..+.||..+...+.
T Consensus 11 ~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~-~~~~~~~~l~~~~~ 74 (81)
T 2csy_A 11 EEEIPFRCFICRQAFQNPVVTKCRHYFCESCALEHFRA-TPRCYICDQPTG-GIFNPAKELMAKLQ 74 (81)
T ss_dssp CCCCCSBCSSSCSBCCSEEECTTSCEEEHHHHHHHHHH-CSBCSSSCCBCC-SCCEECHHHHHHHS
T ss_pred cCCCCCCCcCCCchhcCeeEccCCCHhHHHHHHHHHHC-CCcCCCcCcccc-ccCCcHHHHHHHHH
Confidence 44667999999999999999999999999999999975 678999999987 67889976655543
|
| >2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.19 E-value=1.8e-11 Score=99.10 Aligned_cols=55 Identities=15% Similarity=0.355 Sum_probs=49.6
Q ss_pred CCCCcccccCCccccCCceecCCCCccchhhHHHHhhhCCCCCCCCCCccCCCCC
Q 036199 264 IIPEVFKCPLSLRLMYDPVVIESGQTFERMWIQKWFEEGNHTCPKTKMKLVCQSL 318 (710)
Q Consensus 264 ~~p~~f~CPI~~~~m~DPV~~~~G~ty~r~~I~~w~~~g~~~cP~t~~~l~~~~l 318 (710)
.+++++.||||++.|.|||+++|||+||+.||.+|+..+..+||.|++++....+
T Consensus 11 ~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~i 65 (66)
T 2ecy_A 11 TVEDKYKCEKCHLVLCSPKQTECGHRFCESCMAALLSSSSPKCTACQESIVKDKV 65 (66)
T ss_dssp SCCCCEECTTTCCEESSCCCCSSSCCCCHHHHHHHHTTSSCCCTTTCCCCCTTTC
T ss_pred cCCcCCCCCCCChHhcCeeECCCCCHHHHHHHHHHHHhCcCCCCCCCcCCChhhc
Confidence 4577899999999999999999999999999999998778899999998876543
|
| >2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.15 E-value=4.2e-11 Score=98.65 Aligned_cols=58 Identities=19% Similarity=0.316 Sum_probs=51.9
Q ss_pred CCCCCcccccCCccccCCceec-CCCCccchhhHHHHhhhCCCCCCCCCCccCCCCCccc
Q 036199 263 AIIPEVFKCPLSLRLMYDPVVI-ESGQTFERMWIQKWFEEGNHTCPKTKMKLVCQSLTPN 321 (710)
Q Consensus 263 ~~~p~~f~CPI~~~~m~DPV~~-~~G~ty~r~~I~~w~~~g~~~cP~t~~~l~~~~l~pN 321 (710)
..+.+++.||||++.|.|||++ +|||+||+.||.+|+.. ..+||.|++++....+.+|
T Consensus 10 ~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~~~~~~~~ 68 (72)
T 2djb_A 10 SELTPYILCSICKGYLIDATTITECLHTFCKSCIVRHFYY-SNRCPKCNIVVHQTQPLSG 68 (72)
T ss_dssp CCCCGGGSCTTTSSCCSSCEECSSSCCEECHHHHHHHHHH-CSSCTTTCCCCCSSCSCCC
T ss_pred hhcCCCCCCCCCChHHHCcCEECCCCCHHHHHHHHHHHHc-CCcCCCcCcccCccccccc
Confidence 3467789999999999999998 99999999999999975 6789999999988877766
|
| >1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1 | Back alignment and structure |
|---|
Probab=99.15 E-value=1.2e-11 Score=110.82 Aligned_cols=70 Identities=23% Similarity=0.516 Sum_probs=61.0
Q ss_pred CCCcccccCCccccCCceecCCCCccchhhHHHHhhh--CCCCCCCCCCccCCCCCcccHHHHHHHHHHHHH
Q 036199 265 IPEVFKCPLSLRLMYDPVVIESGQTFERMWIQKWFEE--GNHTCPKTKMKLVCQSLTPNTAMKDLISKWCMN 334 (710)
Q Consensus 265 ~p~~f~CPI~~~~m~DPV~~~~G~ty~r~~I~~w~~~--g~~~cP~t~~~l~~~~l~pN~~l~~~i~~w~~~ 334 (710)
+.+++.||||++.|.|||+++|||+||+.||.+|+.. +..+||.|++++....+.+|..+.++++.+...
T Consensus 18 ~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~~~~~~l~~~~~~~~~~ 89 (112)
T 1jm7_A 18 MQKILECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRSLQESTRFSQLVEELLKI 89 (112)
T ss_dssp HHHHTSCSSSCCCCSSCCBCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCTTTCBCCCSSSHHHHHHHHH
T ss_pred ccCCCCCcccChhhcCeEECCCCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCHhhcCccHHHHHHHHHHHHH
Confidence 3567899999999999999999999999999999984 346899999999999999998877777776543
|
| >4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C | Back alignment and structure |
|---|
Probab=99.12 E-value=2.4e-11 Score=113.35 Aligned_cols=64 Identities=16% Similarity=0.428 Sum_probs=52.8
Q ss_pred CCcccccCCccccCCceecCCCCccchhhHHHHhhhCCCCCCCCCCccCCCCCcccHHHHHHHHHHH
Q 036199 266 PEVFKCPLSLRLMYDPVVIESGQTFERMWIQKWFEEGNHTCPKTKMKLVCQSLTPNTAMKDLISKWC 332 (710)
Q Consensus 266 p~~f~CPI~~~~m~DPV~~~~G~ty~r~~I~~w~~~g~~~cP~t~~~l~~~~l~pN~~l~~~i~~w~ 332 (710)
.++|.||||++.|.|||+++|||+||+.||.+|+.. +.+||.|++++... .+|..+...|..+.
T Consensus 51 ~~~~~C~iC~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~--~~~~~~~~~i~~~~ 114 (138)
T 4ayc_A 51 ENELQCIICSEYFIEAVTLNCAHSFCSYCINEWMKR-KIECPICRKDIKSK--TYSLVLDNCINKMV 114 (138)
T ss_dssp HHHSBCTTTCSBCSSEEEETTSCEEEHHHHHHHTTT-CSBCTTTCCBCCCE--EECHHHHHHHHHHH
T ss_pred cccCCCcccCcccCCceECCCCCCccHHHHHHHHHc-CCcCCCCCCcCCCC--CCccchhHHHHHHH
Confidence 356889999999999999999999999999999985 57899999988653 34666666666554
|
| >3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.09 E-value=3.3e-11 Score=116.46 Aligned_cols=68 Identities=24% Similarity=0.425 Sum_probs=63.0
Q ss_pred CCCCcccccCCccccCCceecCCCCccchhhHHHHhhhCCCCCCCCCCccCCCCCcccHHHHHHHHHH
Q 036199 264 IIPEVFKCPLSLRLMYDPVVIESGQTFERMWIQKWFEEGNHTCPKTKMKLVCQSLTPNTAMKDLISKW 331 (710)
Q Consensus 264 ~~p~~f~CPI~~~~m~DPV~~~~G~ty~r~~I~~w~~~g~~~cP~t~~~l~~~~l~pN~~l~~~i~~w 331 (710)
.++++|.||||+++|.|||+++|||+||+.||.+|+..+..+||.|+.++....+.||..+.+.|.++
T Consensus 14 ~~~~~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~~~i~~l 81 (170)
T 3hcs_A 14 PLESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLFPDNFAKREILSL 81 (170)
T ss_dssp CCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGGGCEECHHHHHHHHTS
T ss_pred CCCCCCCCCCCChhhcCcEECCCCCHHHHHHHHHHHHhCCCCCCCCccCcchhhhhhhHHHHHHHhhc
Confidence 57889999999999999999999999999999999987777999999999988899999999988863
|
| >3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.08 E-value=1.6e-11 Score=114.91 Aligned_cols=67 Identities=12% Similarity=0.314 Sum_probs=57.9
Q ss_pred CCCCcccccCCccccCCceecCCCCccchhhHHHHhhhCCCCCCCCCCccC---------CCCCcccHHHHHHHHH
Q 036199 264 IIPEVFKCPLSLRLMYDPVVIESGQTFERMWIQKWFEEGNHTCPKTKMKLV---------CQSLTPNTAMKDLISK 330 (710)
Q Consensus 264 ~~p~~f~CPI~~~~m~DPV~~~~G~ty~r~~I~~w~~~g~~~cP~t~~~l~---------~~~l~pN~~l~~~i~~ 330 (710)
.+.++|.||||+++|.|||+++|||+||+.||.+|+..+..+||.|++++. ...+.||..+++.|.+
T Consensus 27 ~l~~~~~C~IC~~~~~~pv~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~l~~~~~~~d~~~~~~i~~ 102 (141)
T 3knv_A 27 KLEAKYLCSACRNVLRRPFQAQCGHRYCSFCLASILSSGPQNCAACVHEGIYEEGISILESSSAFPDNAARREVES 102 (141)
T ss_dssp GCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHGGGSCEECHHHHHTTCCCTTTTEECGGGCEECHHHHHHHHT
T ss_pred cCCcCcCCCCCChhhcCcEECCCCCccCHHHHHHHHhcCCCCCCCCCCcccccccccccchhhhcccHHHHHHHcc
Confidence 467889999999999999999999999999999999987789999988643 2346689888888864
|
| >2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.07 E-value=1.3e-10 Score=95.73 Aligned_cols=56 Identities=27% Similarity=0.470 Sum_probs=49.2
Q ss_pred CCCCCcccccCCccccCCceecCCCCccchhhHHHHhh--hCCCCCCCCCCccCCCCC
Q 036199 263 AIIPEVFKCPLSLRLMYDPVVIESGQTFERMWIQKWFE--EGNHTCPKTKMKLVCQSL 318 (710)
Q Consensus 263 ~~~p~~f~CPI~~~~m~DPV~~~~G~ty~r~~I~~w~~--~g~~~cP~t~~~l~~~~l 318 (710)
..+.+++.||||++.|.|||+++|||+||+.||.+|+. .+..+||.|++++....+
T Consensus 15 ~~~~~~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~ 72 (73)
T 2ysl_A 15 NKLQEEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLCKTSVRKNAI 72 (73)
T ss_dssp CCCCCCCBCTTTCSBCSSEEECTTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCCCCC
T ss_pred HhCccCCEeccCCcccCCeEEcCCCChhhHHHHHHHHHcCCCCCCCCCCCCcCCcccC
Confidence 35678899999999999999999999999999999997 356789999998876543
|
| >1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1 | Back alignment and structure |
|---|
Probab=99.06 E-value=6.4e-11 Score=107.03 Aligned_cols=66 Identities=17% Similarity=0.375 Sum_probs=57.7
Q ss_pred CCCcccccCCccccCCceecCCCCccchhhHHHHhhhCCCCCCCCCCccCCCCCc-ccHHHHHHHHH
Q 036199 265 IPEVFKCPLSLRLMYDPVVIESGQTFERMWIQKWFEEGNHTCPKTKMKLVCQSLT-PNTAMKDLISK 330 (710)
Q Consensus 265 ~p~~f~CPI~~~~m~DPV~~~~G~ty~r~~I~~w~~~g~~~cP~t~~~l~~~~l~-pN~~l~~~i~~ 330 (710)
++++|.||||+++|.|||+++|||+||+.||.+|+..+..+||.|+.++....+. ++..+.++|.+
T Consensus 20 ~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~l~~~i~~ 86 (116)
T 1rmd_A 20 FVKSISCQICEHILADPVETSCKHLFCRICILRCLKVMGSYCPSCRYPCFPTDLESPVKSFLNILNS 86 (116)
T ss_dssp HHHHTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCBCCCHHHHHHHHH
T ss_pred ccCCCCCCCCCcHhcCcEEcCCCCcccHHHHHHHHhHCcCcCCCCCCCCCHhhccccHHHHHHHHHH
Confidence 4567999999999999999999999999999999998778999999999877765 56777777765
|
| >1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1 | Back alignment and structure |
|---|
Probab=99.05 E-value=8.6e-11 Score=94.71 Aligned_cols=55 Identities=20% Similarity=0.333 Sum_probs=50.3
Q ss_pred CcccccCCcc-ccCCc----eecCCCCccchhhHHHHhhhCCCCCCCCCCccCCCCCccc
Q 036199 267 EVFKCPLSLR-LMYDP----VVIESGQTFERMWIQKWFEEGNHTCPKTKMKLVCQSLTPN 321 (710)
Q Consensus 267 ~~f~CPI~~~-~m~DP----V~~~~G~ty~r~~I~~w~~~g~~~cP~t~~~l~~~~l~pN 321 (710)
+++.||||++ .+.+| |+++|||+||+.||.+|+..+..+||.|+.++....+.|+
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~ 61 (65)
T 1g25_A 2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRKSNFRVQ 61 (65)
T ss_dssp CTTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCSSCCCEEE
T ss_pred CCCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHcCCCcCCCCCCccccccceee
Confidence 5789999999 99999 5789999999999999998788899999999988888876
|
| >3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A | Back alignment and structure |
|---|
Probab=99.05 E-value=6.3e-09 Score=118.04 Aligned_cols=259 Identities=14% Similarity=0.179 Sum_probs=195.1
Q ss_pred CHHHHHHHHHHHHHHHccCccc-----------------c-hhcccCCcHHHHHHHhhccccCCCHHHHHHHHHHHHHHh
Q 036199 394 NWDCQCKVIEDYETRLEHDNQV-----------------S-HSLSSTNFVEPLIRFLRDARDLHDSRAQRIGCRLLLAFV 455 (710)
Q Consensus 394 ~~e~q~~Al~~L~~Lak~~~~~-----------------r-~~I~~~G~I~~LV~lL~s~~~~~d~~~q~~A~~~L~nL~ 455 (710)
+.+....+++.|..+...+++. . ..+.+.+.|+.|+.+|.+ .|-.++.+++.+|..++
T Consensus 75 D~e~v~~~LetL~~l~~~~~~~~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~----~df~vR~~alqlL~~L~ 150 (651)
T 3grl_A 75 DSEIIGYALDTLYNIISNDEEEEVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLEE----FDFHVRWPGVKLLTSLL 150 (651)
T ss_dssp CHHHHHHHHHHHHHHHCCC--------------CHHHHHHHHHHHSTHHHHHHHHHTTC----CCHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhCCCCcccccccccccchHHHHHHHHHHHcCCccHHHHHHHhcC----ccHHHHHHHHHHHHHHH
Confidence 6777788888887666543321 1 233567899999999987 78999999999999996
Q ss_pred ccC--CCCCccc-cccchHHHHHHhccCcH--HHHHHHHHHHhccCchhhHHHhh-hCcHHHHHHhhcCCC----HHHHH
Q 036199 456 SKN--RSGIPYL-NEDLFSLLASFLHSAAA--TEETLAILVALSSYAYFISKIVA-SGALASILNMLDSPN----GKFQE 525 (710)
Q Consensus 456 ~~~--~~k~~i~-~~gaI~~LV~lL~s~~~--~~~Aa~~L~~Ls~~~~nk~~I~~-~GaI~~LV~LL~~~~----~~~~~ 525 (710)
.+. +++..|. ..++|+.||.+|++... +-.|+..|.+|+....+..+++. .|+++.|++++..+. ..+..
T Consensus 151 ~~r~~~~Q~~Il~~p~gi~~Lv~lL~d~rE~iRneallLL~~Lt~~n~~iQklVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~ 230 (651)
T 3grl_A 151 KQLGPQVQQIILVSPMGVSRLMDLLADSREVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDIITEEGNSDGGIVVE 230 (651)
T ss_dssp HHSHHHHHHHHHHSTTHHHHHHGGGGCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTGGGSHHHHH
T ss_pred hcCcHHHHHHHHhCcccHHHHHHHHhCchHHHHHHHHHHHHHHhcCCHHHHHHHHHhccHHHHHHHHHhcCCCccchhHH
Confidence 543 2455566 56999999999997654 34788889999988777777776 699999999996543 37889
Q ss_pred HHHHHHHHhcc-CcccccccccccchhchHHhhcCc--h------H---HHHHHHHHHHHhcC-------cchHHHHHhh
Q 036199 526 LAIKILHNLSS-DVDIQSHIAPSEFLPKLVPFLKDA--T------L---AVSCLVILKNMCNT-------EHARVCVVET 586 (710)
Q Consensus 526 ~A~~aL~nLs~-~~en~~~iv~aG~V~~Lv~lL~~~--~------~---~~~al~iL~nLa~~-------~e~r~~i~~~ 586 (710)
+++.+|.||.. +..|+..+.+.|+|+.|..+|..+ . - ...++.+++.|... ..++.++.+
T Consensus 231 DCL~ll~nLLr~N~sNQ~~FrEt~~i~~L~~LL~~~~~~~~W~~Qk~~N~~~~L~iIrlLv~~~~~~~~t~~nQ~~~~~- 309 (651)
T 3grl_A 231 DCLILLQNLLKNNNSNQNFFKEGSYIQRMKPWFEVGDENSGWSAQKVTNLHLMLQLVRVLVSPNNPPGATSSCQKAMFQ- 309 (651)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTTCGGGGGGGGCCCSCSSCCCHHHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHhCCCccccccHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHH-
Confidence 99999999997 556999999999999999999422 1 1 23367778888763 235678888
Q ss_pred cCChHHHHHHhhcC--CHHHHHHHHHHHHHHhcCChHHHHHHHhCC-----chHHH----HHHhhc-CCHHHHHHHHHHH
Q 036199 587 SGCLPSVAELLEIG--SEEDQEHAVAILLCLCSQRDQYCKLVMNEG-----VIPSL----VKISVY-GNDKAKVSALELR 654 (710)
Q Consensus 587 ~g~I~~Lv~lL~~~--s~~~ke~A~~aL~~Lc~~~~~~~~~v~~~G-----~v~~L----v~L~~~-gt~~~k~kA~~LL 654 (710)
.|+++.|++++... ....+..|+.++..+.++++.++..+.+.- ..|.+ +.+..+ .....|-.|...+
T Consensus 310 ~g~l~~Ll~ll~~~~~p~~i~~~Al~tla~~irgN~~~Q~~fa~~~vp~~~~~p~li~lL~~~~~~~~~~~lR~Aa~~cl 389 (651)
T 3grl_A 310 CGLLQQLCTILMATGVPADILTETINTVSEVIRGCQVNQDYFASVNAPSNPPRPAIVVLLMSMVNERQPFVLRCAVLYCF 389 (651)
T ss_dssp TTHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHCEESSSSCEEHHHHHHHHHTCTTSCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHccCCCCHHHHHHHHHHHHHHHhCCHHHHHHHhhccCCCCCCcChHHHHHHHHhcccccHHHHHHHHHHH
Confidence 79999999998864 778899999999999999988888777643 22333 333433 3466777777777
Q ss_pred HHh
Q 036199 655 RLL 657 (710)
Q Consensus 655 ~~l 657 (710)
+.+
T Consensus 390 ~ay 392 (651)
T 3grl_A 390 QCF 392 (651)
T ss_dssp HHH
T ss_pred HHH
Confidence 733
|
| >2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.02 E-value=2.5e-10 Score=91.32 Aligned_cols=46 Identities=30% Similarity=0.564 Sum_probs=41.9
Q ss_pred CCCCcccccCCccccCCceecCCCCccchhhHHHHhhh--CCCCCCCC
Q 036199 264 IIPEVFKCPLSLRLMYDPVVIESGQTFERMWIQKWFEE--GNHTCPKT 309 (710)
Q Consensus 264 ~~p~~f~CPI~~~~m~DPV~~~~G~ty~r~~I~~w~~~--g~~~cP~t 309 (710)
.+.+++.||||++.|.|||+++|||+||+.||++|+.. +..+||.|
T Consensus 16 ~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 16 KLQEEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCCCCBCTTTCSBCSSCEECTTSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred hCccCCCCCcCCchhCCeEEeCCCCcchHHHHHHHHHcCCCCCcCcCC
Confidence 46778999999999999999999999999999999985 56789986
|
| >3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} | Back alignment and structure |
|---|
Probab=98.96 E-value=3.5e-08 Score=97.50 Aligned_cols=185 Identities=17% Similarity=0.163 Sum_probs=150.9
Q ss_pred cCCcHHHHHHHhhccccCCCHHHHHHHHHHHHHHhccCCCCCccccccchHHHHHHhccCcHH--HHHHHHHHHhccCch
Q 036199 421 STNFVEPLIRFLRDARDLHDSRAQRIGCRLLLAFVSKNRSGIPYLNEDLFSLLASFLHSAAAT--EETLAILVALSSYAY 498 (710)
Q Consensus 421 ~~G~I~~LV~lL~s~~~~~d~~~q~~A~~~L~nL~~~~~~k~~i~~~gaI~~LV~lL~s~~~~--~~Aa~~L~~Ls~~~~ 498 (710)
..+.++.|+.+|.+ .+..++..|+..|..+. ..++++.|+.+|.+++.. ..|+.+|..+.
T Consensus 17 ~~~~~~~L~~~L~~----~~~~vR~~A~~~L~~~~----------~~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~---- 78 (211)
T 3ltm_A 17 DPEKVEMYIKNLQD----DSYYVRRAAAYALGKIG----------DERAVEPLIKALKDEDAWVRRAAADALGQIG---- 78 (211)
T ss_dssp CGGGHHHHHHHTTC----SSHHHHHHHHHHHHHHC----------CGGGHHHHHHHTTCSCHHHHHHHHHHHHHHC----
T ss_pred CHhHHHHHHHHHcC----CCHHHHHHHHHHHHHhC----------CccHHHHHHHHHcCCCHHHHHHHHHHHHhhC----
Confidence 46789999999987 78999999999998762 257899999999988753 57777776653
Q ss_pred hhHHHhhhCcHHHHHHhhcCCCHHHHHHHHHHHHHhccCcccccccccccchhchHHhhcCc--hHHHHHHHHHHHHhcC
Q 036199 499 FISKIVASGALASILNMLDSPNGKFQELAIKILHNLSSDVDIQSHIAPSEFLPKLVPFLKDA--TLAVSCLVILKNMCNT 576 (710)
Q Consensus 499 nk~~I~~~GaI~~LV~LL~~~~~~~~~~A~~aL~nLs~~~en~~~iv~aG~V~~Lv~lL~~~--~~~~~al~iL~nLa~~ 576 (710)
..++++.|+.+|.++++.++..|+.+|.++.. .++++.|+.+|.++ .++..|+.+|..+..
T Consensus 79 ------~~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~- 141 (211)
T 3ltm_A 79 ------DERAVEPLIKALKDEDGWVRQSAAVALGQIGD----------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD- 141 (211)
T ss_dssp ------CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-
T ss_pred ------CHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC-
Confidence 35689999999999999999999999998852 46889999999664 578888999988742
Q ss_pred cchHHHHHhhcCChHHHHHHhhcCCHHHHHHHHHHHHHHhcCChHHHHHHHhCCchHHHHHHhhcCCHHHHHHHHHHHHH
Q 036199 577 EHARVCVVETSGCLPSVAELLEIGSEEDQEHAVAILLCLCSQRDQYCKLVMNEGVIPSLVKISVYGNDKAKVSALELRRL 656 (710)
Q Consensus 577 ~e~r~~i~~~~g~I~~Lv~lL~~~s~~~ke~A~~aL~~Lc~~~~~~~~~v~~~G~v~~Lv~L~~~gt~~~k~kA~~LL~~ 656 (710)
...++.|+.++...++.++..|+.+|..+.. ..+++.|..++.++++.+|..|...|..
T Consensus 142 ----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~d~~~~vr~~A~~aL~~ 200 (211)
T 3ltm_A 142 ----------ERAVEPLIKALKDEDGWVRQSAADALGEIGG-----------ERVRAAMEKLAETGTGFARKVAVNYLET 200 (211)
T ss_dssp ----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS-----------HHHHHHHHHHHHHCCHHHHHHHHHHHHC
T ss_pred ----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------hhHHHHHHHHHhCCCHHHHHHHHHHHHh
Confidence 3468999999999999999999999998843 2457889999999999999999999987
Q ss_pred hhhcc
Q 036199 657 LRDVA 661 (710)
Q Consensus 657 l~~~~ 661 (710)
+....
T Consensus 201 ~~~~~ 205 (211)
T 3ltm_A 201 HKSFN 205 (211)
T ss_dssp -----
T ss_pred cCCCC
Confidence 76553
|
| >2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.95 E-value=6.9e-10 Score=86.98 Aligned_cols=46 Identities=28% Similarity=0.720 Sum_probs=41.5
Q ss_pred CCCCcccccCCccccCCceecCCCCccchhhHHHHhhh--CCCCCCCC
Q 036199 264 IIPEVFKCPLSLRLMYDPVVIESGQTFERMWIQKWFEE--GNHTCPKT 309 (710)
Q Consensus 264 ~~p~~f~CPI~~~~m~DPV~~~~G~ty~r~~I~~w~~~--g~~~cP~t 309 (710)
.+.+++.||||++.+.|||+++|||+|++.||.+|+.. +..+||.|
T Consensus 11 ~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 11 NLQVEASCSVCLEYLKEPVIIECGHNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp CSCCCCBCSSSCCBCSSCCCCSSCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred ccccCCCCccCCcccCccEeCCCCCccCHHHHHHHHHhcCCCCCCCCC
Confidence 45678999999999999999999999999999999864 67889986
|
| >3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.94 E-value=2.8e-10 Score=93.17 Aligned_cols=57 Identities=19% Similarity=0.386 Sum_probs=51.2
Q ss_pred CCCcccccCCccccCCc-------eecCCCCccchhhHHHHhhhCCCCCCCCCCccCCCCCcccH
Q 036199 265 IPEVFKCPLSLRLMYDP-------VVIESGQTFERMWIQKWFEEGNHTCPKTKMKLVCQSLTPNT 322 (710)
Q Consensus 265 ~p~~f~CPI~~~~m~DP-------V~~~~G~ty~r~~I~~w~~~g~~~cP~t~~~l~~~~l~pN~ 322 (710)
..+++.||||++.|.+| ++++|||+|++.||.+|+.. +.+||.|++++....+.|++
T Consensus 7 ~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~~~~~~~ 70 (71)
T 3ng2_A 7 PSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCPTCRKKINHKRYHPIY 70 (71)
T ss_dssp CTTCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHH-CSBCTTTCCBCCCCSCCCCC
T ss_pred CCCCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHc-CCCCCCCCCccChhheeecc
Confidence 45679999999999999 89999999999999999986 46899999999988888764
|
| >2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.92 E-value=6.2e-10 Score=91.29 Aligned_cols=51 Identities=14% Similarity=0.212 Sum_probs=45.4
Q ss_pred CCCcccccCCccccCCceecCCCCccchhhHHHHhhhCCCCCCCCCCccCCC
Q 036199 265 IPEVFKCPLSLRLMYDPVVIESGQTFERMWIQKWFEEGNHTCPKTKMKLVCQ 316 (710)
Q Consensus 265 ~p~~f~CPI~~~~m~DPV~~~~G~ty~r~~I~~w~~~g~~~cP~t~~~l~~~ 316 (710)
..+++.||||++.|.|||+++|||+||+.||.+|+.. +.+||.|++++...
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~~~ 62 (71)
T 2d8t_A 12 SLTVPECAICLQTCVHPVSLPCKHVFCYLCVKGASWL-GKRCALCRQEIPED 62 (71)
T ss_dssp SSSCCBCSSSSSBCSSEEEETTTEEEEHHHHHHCTTC-SSBCSSSCCBCCHH
T ss_pred CCCCCCCccCCcccCCCEEccCCCHHHHHHHHHHHHC-CCcCcCcCchhCHh
Confidence 4567999999999999999999999999999999985 47899999887643
|
| >3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} | Back alignment and structure |
|---|
Probab=98.90 E-value=5.4e-08 Score=95.35 Aligned_cols=184 Identities=17% Similarity=0.167 Sum_probs=151.2
Q ss_pred ccCCcHHHHHHHhhccccCCCHHHHHHHHHHHHHHhccCCCCCccccccchHHHHHHhccCcHH--HHHHHHHHHhccCc
Q 036199 420 SSTNFVEPLIRFLRDARDLHDSRAQRIGCRLLLAFVSKNRSGIPYLNEDLFSLLASFLHSAAAT--EETLAILVALSSYA 497 (710)
Q Consensus 420 ~~~G~I~~LV~lL~s~~~~~d~~~q~~A~~~L~nL~~~~~~k~~i~~~gaI~~LV~lL~s~~~~--~~Aa~~L~~Ls~~~ 497 (710)
...+..+.++.+|.+ .|..++..|+.+|..+. ..++++.|+.+|.+++.. ..|+.+|..+.
T Consensus 11 ~~~~~~~~~i~~L~~----~~~~vr~~A~~~L~~~~----------~~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~--- 73 (201)
T 3ltj_A 11 TDPEKVEMYIKNLQD----DSYYVRRAAAYALGKIG----------DERAVEPLIKALKDEDAWVRRAAADALGQIG--- 73 (201)
T ss_dssp CCHHHHHHHHHHTTC----SCHHHHHHHHHHHHHHC----------CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHC---
T ss_pred cCCcchHHHHHHhcC----CCHHHHHHHHHHHHhcC----------ChhHHHHHHHHHcCCCHHHHHHHHHHHHhhC---
Confidence 345778899999988 78999999999999762 247899999999887753 57777776553
Q ss_pred hhhHHHhhhCcHHHHHHhhcCCCHHHHHHHHHHHHHhccCcccccccccccchhchHHhhcCc--hHHHHHHHHHHHHhc
Q 036199 498 YFISKIVASGALASILNMLDSPNGKFQELAIKILHNLSSDVDIQSHIAPSEFLPKLVPFLKDA--TLAVSCLVILKNMCN 575 (710)
Q Consensus 498 ~nk~~I~~~GaI~~LV~LL~~~~~~~~~~A~~aL~nLs~~~en~~~iv~aG~V~~Lv~lL~~~--~~~~~al~iL~nLa~ 575 (710)
..++++.|+.+|.+.++.++..|+.+|.++.. ..+++.|+.+|.++ .++..|+.+|..+..
T Consensus 74 -------~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~ 136 (201)
T 3ltj_A 74 -------DERAVEPLIKALKDEDGWVRQSAAVALGQIGD----------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD 136 (201)
T ss_dssp -------CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHTC
T ss_pred -------CHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC
Confidence 34689999999999999999999999998752 45889999999664 578888888888742
Q ss_pred CcchHHHHHhhcCChHHHHHHhhcCCHHHHHHHHHHHHHHhcCChHHHHHHHhCCchHHHHHHhhcCCHHHHHHHHHHHH
Q 036199 576 TEHARVCVVETSGCLPSVAELLEIGSEEDQEHAVAILLCLCSQRDQYCKLVMNEGVIPSLVKISVYGNDKAKVSALELRR 655 (710)
Q Consensus 576 ~~e~r~~i~~~~g~I~~Lv~lL~~~s~~~ke~A~~aL~~Lc~~~~~~~~~v~~~G~v~~Lv~L~~~gt~~~k~kA~~LL~ 655 (710)
...++.|+.++...++.++..|+.+|..+.. ..+++.|..++.+.++.+|..|...|.
T Consensus 137 -----------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~-----------~~~~~~L~~~l~d~~~~vr~~A~~aL~ 194 (201)
T 3ltj_A 137 -----------ERAVEPLIKALKDEDGWVRQSAADALGEIGG-----------ERVRAAMEKLAETGTGFARKVAVNYLE 194 (201)
T ss_dssp -----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS-----------HHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred -----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------hhHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 4578999999999999999999999998832 135788999999999999999999998
Q ss_pred Hhhh
Q 036199 656 LLRD 659 (710)
Q Consensus 656 ~l~~ 659 (710)
.+..
T Consensus 195 ~l~~ 198 (201)
T 3ltj_A 195 THKS 198 (201)
T ss_dssp HCC-
T ss_pred HHHh
Confidence 7653
|
| >2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.88 E-value=2e-09 Score=91.86 Aligned_cols=53 Identities=21% Similarity=0.467 Sum_probs=47.2
Q ss_pred CCCCcccccCCccccCC----ceecCCCCccchhhHHHHhhhC--CCCCCCCCCccCCC
Q 036199 264 IIPEVFKCPLSLRLMYD----PVVIESGQTFERMWIQKWFEEG--NHTCPKTKMKLVCQ 316 (710)
Q Consensus 264 ~~p~~f~CPI~~~~m~D----PV~~~~G~ty~r~~I~~w~~~g--~~~cP~t~~~l~~~ 316 (710)
.+.+++.||||++.|.| |++++|||+||+.||.+|+... ..+||.|++++...
T Consensus 11 ~~~~~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~ 69 (88)
T 2ct2_A 11 ALREVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKITRIT 69 (88)
T ss_dssp CCCSCCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCCS
T ss_pred hccCCCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcCCCCcCCCCCCCcccch
Confidence 45678999999999999 9999999999999999999864 57899999987654
|
| >2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.85 E-value=6e-10 Score=89.06 Aligned_cols=55 Identities=20% Similarity=0.428 Sum_probs=49.2
Q ss_pred CcccccCCccccCCc-------eecCCCCccchhhHHHHhhhCCCCCCCCCCccCCCCCcccH
Q 036199 267 EVFKCPLSLRLMYDP-------VVIESGQTFERMWIQKWFEEGNHTCPKTKMKLVCQSLTPNT 322 (710)
Q Consensus 267 ~~f~CPI~~~~m~DP-------V~~~~G~ty~r~~I~~w~~~g~~~cP~t~~~l~~~~l~pN~ 322 (710)
+++.||||++.+.+| ++++|||+|++.||.+|+.. +.+||.|++++...++.|++
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~~~~~~~ 63 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCPTCRKKINHKRYHPIY 63 (64)
T ss_dssp CCCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHH-CSBCTTTCCBCTTTCEEECC
T ss_pred CCCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHc-CCCCCCCCccCCccceeeee
Confidence 468899999999998 88999999999999999986 67999999999888877753
|
| >2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.84 E-value=1.7e-09 Score=87.81 Aligned_cols=52 Identities=19% Similarity=0.375 Sum_probs=46.3
Q ss_pred CCCCCcccccCCccccCCc-------eecCCCCccchhhHHHHhhhCCCCCCCCCCccCC
Q 036199 263 AIIPEVFKCPLSLRLMYDP-------VVIESGQTFERMWIQKWFEEGNHTCPKTKMKLVC 315 (710)
Q Consensus 263 ~~~p~~f~CPI~~~~m~DP-------V~~~~G~ty~r~~I~~w~~~g~~~cP~t~~~l~~ 315 (710)
...++++.||||++.|.+| ++++|||+|++.||.+|+.. +.+||.|++++..
T Consensus 10 ~~~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~ 68 (69)
T 2ea6_A 10 LRPSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCPTCRKKINH 68 (69)
T ss_dssp CCTTCCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHH-CSSCTTTCCCCCC
T ss_pred cCCCCCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHc-CCCCCCCCCccCc
Confidence 3457789999999999999 89999999999999999986 6789999998764
|
| >2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} | Back alignment and structure |
|---|
Probab=98.79 E-value=5.7e-09 Score=87.04 Aligned_cols=57 Identities=19% Similarity=0.377 Sum_probs=48.3
Q ss_pred CCCCcccccCCccccCCc---eecCCCCccchhhHHHHhhhCCCCCCCCCCccCCCCCccc
Q 036199 264 IIPEVFKCPLSLRLMYDP---VVIESGQTFERMWIQKWFEEGNHTCPKTKMKLVCQSLTPN 321 (710)
Q Consensus 264 ~~p~~f~CPI~~~~m~DP---V~~~~G~ty~r~~I~~w~~~g~~~cP~t~~~l~~~~l~pN 321 (710)
...+++.||||++.|.+| ++++|||+|++.||.+|+.. +.+||.|++++....+.+|
T Consensus 11 ~~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~~~~~~ 70 (78)
T 2ect_A 11 HVGSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQ-HDSCPVCRKSLTGQNTATN 70 (78)
T ss_dssp TSSSSCCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHTT-TCSCTTTCCCCCCSCSCCC
T ss_pred cCCCCCCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHHc-CCcCcCcCCccCCcccCCC
Confidence 345678999999999987 44699999999999999975 5799999999988776665
|
| >1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B | Back alignment and structure |
|---|
Probab=98.75 E-value=7.8e-09 Score=86.35 Aligned_cols=54 Identities=17% Similarity=0.290 Sum_probs=46.5
Q ss_pred CCCcccccCCcccc--CCceecC--CCCccchhhHHHHhhhCCCCCCCCCCccCCCCC
Q 036199 265 IPEVFKCPLSLRLM--YDPVVIE--SGQTFERMWIQKWFEEGNHTCPKTKMKLVCQSL 318 (710)
Q Consensus 265 ~p~~f~CPI~~~~m--~DPV~~~--~G~ty~r~~I~~w~~~g~~~cP~t~~~l~~~~l 318 (710)
..+++.||||++.+ .||++.+ |||+||+.||.+|+..+...||.|++++....+
T Consensus 8 ~~~~~~CpICle~~~~~d~~~~p~~CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~~~~~ 65 (78)
T 1e4u_A 8 KEDPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPEDPA 65 (78)
T ss_dssp CCCCCBCTTTCCBCCTTTTTCCSSTTSCCCCHHHHHHHTTSSCSBCTTTCCBCSSCSS
T ss_pred cccCCcCCccCccCccccccccccCCCCCcCHHHHHHHHhcCCCCCCCCCCccCCCch
Confidence 46789999999998 5677776 999999999999998778899999999876543
|
| >3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} | Back alignment and structure |
|---|
Probab=98.74 E-value=4.2e-07 Score=89.62 Aligned_cols=177 Identities=18% Similarity=0.148 Sum_probs=141.8
Q ss_pred hhhcCCCHHHHHHHHHHHHHHHccCcccchhcccCCcHHHHHHHhhccccCCCHHHHHHHHHHHHHHhccCCCCCccccc
Q 036199 388 SRLTELNWDCQCKVIEDYETRLEHDNQVSHSLSSTNFVEPLIRFLRDARDLHDSRAQRIGCRLLLAFVSKNRSGIPYLNE 467 (710)
Q Consensus 388 ~~L~s~~~e~q~~Al~~L~~Lak~~~~~r~~I~~~G~I~~LV~lL~s~~~~~d~~~q~~A~~~L~nL~~~~~~k~~i~~~ 467 (710)
..|.+.++.++..|+..|..+. ..+.++.|+.+|.+ .+..++..|+.+|..+. ..
T Consensus 26 ~~L~~~~~~vR~~A~~~L~~~~-----------~~~~~~~L~~~l~~----~~~~vr~~a~~aL~~~~----------~~ 80 (211)
T 3ltm_A 26 KNLQDDSYYVRRAAAYALGKIG-----------DERAVEPLIKALKD----EDAWVRRAAADALGQIG----------DE 80 (211)
T ss_dssp HHTTCSSHHHHHHHHHHHHHHC-----------CGGGHHHHHHHTTC----SCHHHHHHHHHHHHHHC----------CG
T ss_pred HHHcCCCHHHHHHHHHHHHHhC-----------CccHHHHHHHHHcC----CCHHHHHHHHHHHHhhC----------CH
Confidence 6677889999999998887653 24689999999987 68999999999998872 35
Q ss_pred cchHHHHHHhccCcHH--HHHHHHHHHhccCchhhHHHhhhCcHHHHHHhhcCCCHHHHHHHHHHHHHhccCcccccccc
Q 036199 468 DLFSLLASFLHSAAAT--EETLAILVALSSYAYFISKIVASGALASILNMLDSPNGKFQELAIKILHNLSSDVDIQSHIA 545 (710)
Q Consensus 468 gaI~~LV~lL~s~~~~--~~Aa~~L~~Ls~~~~nk~~I~~~GaI~~LV~LL~~~~~~~~~~A~~aL~nLs~~~en~~~iv 545 (710)
++++.|+.+|.+++.. ..|+.+|..+. ..++++.|+.+|.++++.++..|+.+|.++.
T Consensus 81 ~~~~~L~~~l~~~~~~vr~~a~~aL~~~~----------~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~---------- 140 (211)
T 3ltm_A 81 RAVEPLIKALKDEDGWVRQSAAVALGQIG----------DERAVEPLIKALKDEDWFVRIAAAFALGEIG---------- 140 (211)
T ss_dssp GGHHHHHHHTTCSSHHHHHHHHHHHHHHC----------CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHC----------
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHhC----------cHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC----------
Confidence 7899999999988753 57888887654 3468999999999999999999999999985
Q ss_pred cccchhchHHhhcCc--hHHHHHHHHHHHHhcCcchHHHHHhhcCChHHHHHHhhcCCHHHHHHHHHHHHHHhcCCh
Q 036199 546 PSEFLPKLVPFLKDA--TLAVSCLVILKNMCNTEHARVCVVETSGCLPSVAELLEIGSEEDQEHAVAILLCLCSQRD 620 (710)
Q Consensus 546 ~aG~V~~Lv~lL~~~--~~~~~al~iL~nLa~~~e~r~~i~~~~g~I~~Lv~lL~~~s~~~ke~A~~aL~~Lc~~~~ 620 (710)
...+++.|+.++.++ .++..|+.+|..+.. ..+++.|..++...++.++..|+.+|..+.....
T Consensus 141 ~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~~~~ 206 (211)
T 3ltm_A 141 DERAVEPLIKALKDEDGWVRQSAADALGEIGG-----------ERVRAAMEKLAETGTGFARKVAVNYLETHKSFNH 206 (211)
T ss_dssp CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS-----------HHHHHHHHHHHHHCCHHHHHHHHHHHHC------
T ss_pred CHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------hhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCC
Confidence 246889999999664 578888888888842 3467889999999999999999999998877653
|
| >4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A | Back alignment and structure |
|---|
Probab=98.72 E-value=7.2e-08 Score=113.00 Aligned_cols=188 Identities=15% Similarity=0.121 Sum_probs=147.6
Q ss_pred cchHHHHHHhccCcH--HHHHHHHHHHhccCchhhHHHhhhCcHHHHH-HhhcCCCHHHHHHHHHHHHHhccC--ccccc
Q 036199 468 DLFSLLASFLHSAAA--TEETLAILVALSSYAYFISKIVASGALASIL-NMLDSPNGKFQELAIKILHNLSSD--VDIQS 542 (710)
Q Consensus 468 gaI~~LV~lL~s~~~--~~~Aa~~L~~Ls~~~~nk~~I~~~GaI~~LV-~LL~~~~~~~~~~A~~aL~nLs~~--~en~~ 542 (710)
..|.++++.|++++. +..|+++|.+|+.+..++..+...|+|.+++ .+|.+.+.+++..|+++|.||+.. .+.+.
T Consensus 34 ~~i~Pll~~L~S~~~~~r~~A~~al~~l~~~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d~~~ 113 (684)
T 4gmo_A 34 DKILPVLKDLKSPDAKSRTTAAGAIANIVQDAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEADFCV 113 (684)
T ss_dssp HTTHHHHHHHSSSCCSHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHHHHH
T ss_pred hhHHHHHHHcCCCCHHHHHHHHHHHHHHHcCcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCchHHH
Confidence 456678888998775 4699999999999999999999999988765 578888999999999999999964 57888
Q ss_pred ccccccchhchHHhhcC-----------------------chHHHHHHHHHHHHhc-CcchHHHHHhhcCChHHHHHHhh
Q 036199 543 HIAPSEFLPKLVPFLKD-----------------------ATLAVSCLVILKNMCN-TEHARVCVVETSGCLPSVAELLE 598 (710)
Q Consensus 543 ~iv~aG~V~~Lv~lL~~-----------------------~~~~~~al~iL~nLa~-~~e~r~~i~~~~g~I~~Lv~lL~ 598 (710)
.+++.|++++|..+|.. .++.+.++.+|++||. +.+....+.. .++++.|+..|.
T Consensus 114 ~l~~~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v~~-~~~l~~l~~~L~ 192 (684)
T 4gmo_A 114 HLYRLDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEAVAT-KQTILRLLFRLI 192 (684)
T ss_dssp HHHHTTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHT-CHHHHHHHHHHH
T ss_pred HHHHcChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHh-cccHHHHHHHHH
Confidence 99999999999998831 0235678899999997 5566677777 788999999885
Q ss_pred c---CCHHHHHHHHHHHHHHhcCChHHHHHHHhCCchH---HHHHHhhcCCHHHHHHHHHHHHHh
Q 036199 599 I---GSEEDQEHAVAILLCLCSQRDQYCKLVMNEGVIP---SLVKISVYGNDKAKVSALELRRLL 657 (710)
Q Consensus 599 ~---~s~~~ke~A~~aL~~Lc~~~~~~~~~v~~~G~v~---~Lv~L~~~gt~~~k~kA~~LL~~l 657 (710)
. .....+..|+.+|+.++..+....+.+...|... .|..+..+.... +.-+..+|..+
T Consensus 193 ~~~~~~~~v~~~a~~~L~~ls~dn~~~~~~i~~~~~~~~~~~ll~~~~~~~~~-~~la~giL~Ni 256 (684)
T 4gmo_A 193 SADIAPQDIYEEAISCLTTLSEDNLKVGQAITDDQETHVYDVLLKLATGTDPR-AVMACGVLHNV 256 (684)
T ss_dssp HHCCSCHHHHHHHHHHHHHHHTTCHHHHHHHHTCCSSCHHHHHHHHHHSSCTT-HHHHHHHHHHH
T ss_pred hcCCCcHHHHHHHHHHHHHHhccCHHHHHHHHhcchHHHHHHHHHHhcCCcHH-HHHHHHHHHhH
Confidence 4 3568899999999999999988888888887643 444444444443 44555555543
|
| >3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} | Back alignment and structure |
|---|
Probab=98.72 E-value=5.3e-07 Score=88.15 Aligned_cols=175 Identities=18% Similarity=0.149 Sum_probs=143.1
Q ss_pred cchhhcCCCHHHHHHHHHHHHHHHccCcccchhcccCCcHHHHHHHhhccccCCCHHHHHHHHHHHHHHhccCCCCCccc
Q 036199 386 DLSRLTELNWDCQCKVIEDYETRLEHDNQVSHSLSSTNFVEPLIRFLRDARDLHDSRAQRIGCRLLLAFVSKNRSGIPYL 465 (710)
Q Consensus 386 ~L~~L~s~~~e~q~~Al~~L~~Lak~~~~~r~~I~~~G~I~~LV~lL~s~~~~~d~~~q~~A~~~L~nL~~~~~~k~~i~ 465 (710)
++..|.+.++.++..|+..|..+. ..+.++.|+.+|.+ .+..++..|+.+|..+.
T Consensus 19 ~i~~L~~~~~~vr~~A~~~L~~~~-----------~~~~~~~L~~~l~~----~~~~vr~~a~~~L~~~~---------- 73 (201)
T 3ltj_A 19 YIKNLQDDSYYVRRAAAYALGKIG-----------DERAVEPLIKALKD----EDAWVRRAAADALGQIG---------- 73 (201)
T ss_dssp HHHHTTCSCHHHHHHHHHHHHHHC-----------CGGGHHHHHHHTTC----SSHHHHHHHHHHHHHHC----------
T ss_pred HHHHhcCCCHHHHHHHHHHHHhcC-----------ChhHHHHHHHHHcC----CCHHHHHHHHHHHHhhC----------
Confidence 337788899999999999887653 24679999999976 78999999999998872
Q ss_pred cccchHHHHHHhccCcHH--HHHHHHHHHhccCchhhHHHhhhCcHHHHHHhhcCCCHHHHHHHHHHHHHhccCcccccc
Q 036199 466 NEDLFSLLASFLHSAAAT--EETLAILVALSSYAYFISKIVASGALASILNMLDSPNGKFQELAIKILHNLSSDVDIQSH 543 (710)
Q Consensus 466 ~~gaI~~LV~lL~s~~~~--~~Aa~~L~~Ls~~~~nk~~I~~~GaI~~LV~LL~~~~~~~~~~A~~aL~nLs~~~en~~~ 543 (710)
..++++.|+.+|.+++.. ..|+.+|..+. ...+++.|+.+|.++++.++..|+.+|.++.
T Consensus 74 ~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~----------~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~-------- 135 (201)
T 3ltj_A 74 DERAVEPLIKALKDEDGWVRQSAAVALGQIG----------DERAVEPLIKALKDEDWFVRIAAAFALGEIG-------- 135 (201)
T ss_dssp CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHC----------CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHT--------
T ss_pred CHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC----------cHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC--------
Confidence 346899999999988753 57888887653 3458999999999999999999999999885
Q ss_pred cccccchhchHHhhcCc--hHHHHHHHHHHHHhcCcchHHHHHhhcCChHHHHHHhhcCCHHHHHHHHHHHHHHh
Q 036199 544 IAPSEFLPKLVPFLKDA--TLAVSCLVILKNMCNTEHARVCVVETSGCLPSVAELLEIGSEEDQEHAVAILLCLC 616 (710)
Q Consensus 544 iv~aG~V~~Lv~lL~~~--~~~~~al~iL~nLa~~~e~r~~i~~~~g~I~~Lv~lL~~~s~~~ke~A~~aL~~Lc 616 (710)
..++++.|+.++.++ .++..|+.+|..+.. ..+++.|..++...++.++..|+.+|..+-
T Consensus 136 --~~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~-----------~~~~~~L~~~l~d~~~~vr~~A~~aL~~l~ 197 (201)
T 3ltj_A 136 --DERAVEPLIKALKDEDGWVRQSAADALGEIGG-----------ERVRAAMEKLAETGTGFARKVAVNYLETHK 197 (201)
T ss_dssp --CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS-----------HHHHHHHHHHHHHCCHHHHHHHHHHHHHCC
T ss_pred --CHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------hhHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 256889999999664 578888888888832 346788899999999999999999997753
|
| >1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 | Back alignment and structure |
|---|
Probab=98.67 E-value=6.7e-07 Score=92.21 Aligned_cols=119 Identities=13% Similarity=0.049 Sum_probs=64.2
Q ss_pred CcHHHHHHhhcCCCHHHHHHHHHHHHHhccCcccccccccccchhchHHhhcCc--hHHHHHHHHHHHHhcCcchHHHHH
Q 036199 507 GALASILNMLDSPNGKFQELAIKILHNLSSDVDIQSHIAPSEFLPKLVPFLKDA--TLAVSCLVILKNMCNTEHARVCVV 584 (710)
Q Consensus 507 GaI~~LV~LL~~~~~~~~~~A~~aL~nLs~~~en~~~iv~aG~V~~Lv~lL~~~--~~~~~al~iL~nLa~~~e~r~~i~ 584 (710)
.+++.|+.+|.++++.++..|+.+|.++.. .++++.|+.+|.++ .++..|+.+|..+....
T Consensus 128 ~~~~~L~~~l~d~~~~vR~~a~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~------- 190 (280)
T 1oyz_A 128 KIVEQSQITAFDKSTNVRRATAFAISVIND----------KATIPLLINLLKDPNGDVRNWAAFAININKYDN------- 190 (280)
T ss_dssp HHHHHHHHHTTCSCHHHHHHHHHHHHTC-------------CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCC-------
T ss_pred HHHHHHHHHhhCCCHHHHHHHHHHHHhcCC----------HHHHHHHHHHHcCCCHHHHHHHHHHHHhhccCc-------
Confidence 345666666666666666666666655532 23566666666442 34555566665553211
Q ss_pred hhcCChHHHHHHhhcCCHHHHHHHHHHHHHHhcCChHHHHHHHhCCchHHHHHHhhcCCHHHHHHHHHHHHHh
Q 036199 585 ETSGCLPSVAELLEIGSEEDQEHAVAILLCLCSQRDQYCKLVMNEGVIPSLVKISVYGNDKAKVSALELRRLL 657 (710)
Q Consensus 585 ~~~g~I~~Lv~lL~~~s~~~ke~A~~aL~~Lc~~~~~~~~~v~~~G~v~~Lv~L~~~gt~~~k~kA~~LL~~l 657 (710)
...++.|+.++...++.++..|+.+|..+. ...+++.|+.++.+.+ ++..|...|..+
T Consensus 191 --~~~~~~L~~~l~d~~~~vR~~A~~aL~~~~-----------~~~~~~~L~~~l~d~~--vr~~a~~aL~~i 248 (280)
T 1oyz_A 191 --SDIRDCFVEMLQDKNEEVRIEAIIGLSYRK-----------DKRVLSVLCDELKKNT--VYDDIIEAAGEL 248 (280)
T ss_dssp --HHHHHHHHHHTTCSCHHHHHHHHHHHHHTT-----------CGGGHHHHHHHHTSSS--CCHHHHHHHHHH
T ss_pred --HHHHHHHHHHhcCCCHHHHHHHHHHHHHhC-----------CHhhHHHHHHHhcCcc--HHHHHHHHHHhc
Confidence 223556666666666666666666665553 1235566666665543 445555555444
|
| >1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 | Back alignment and structure |
|---|
Probab=98.66 E-value=4.5e-07 Score=93.51 Aligned_cols=118 Identities=16% Similarity=0.245 Sum_probs=85.6
Q ss_pred hCcHHHHHHhhcCCCHHHHHHHHHHHHHhccCcccccccccccchhchHHhhcC--chHHHHHHHHHHHHhcCcchHHHH
Q 036199 506 SGALASILNMLDSPNGKFQELAIKILHNLSSDVDIQSHIAPSEFLPKLVPFLKD--ATLAVSCLVILKNMCNTEHARVCV 583 (710)
Q Consensus 506 ~GaI~~LV~LL~~~~~~~~~~A~~aL~nLs~~~en~~~iv~aG~V~~Lv~lL~~--~~~~~~al~iL~nLa~~~e~r~~i 583 (710)
.++++.|+.+|.++++.++..|+.+|.++... ...+++.|+.+|.+ +.++..|+.+|..+.
T Consensus 158 ~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~--------~~~~~~~L~~~l~d~~~~vR~~A~~aL~~~~--------- 220 (280)
T 1oyz_A 158 KATIPLLINLLKDPNGDVRNWAAFAININKYD--------NSDIRDCFVEMLQDKNEEVRIEAIIGLSYRK--------- 220 (280)
T ss_dssp -CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCC--------CHHHHHHHHHHTTCSCHHHHHHHHHHHHHTT---------
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHhhccC--------cHHHHHHHHHHhcCCCHHHHHHHHHHHHHhC---------
Confidence 45889999999999999999999999887422 23678889998865 456788888888775
Q ss_pred HhhcCChHHHHHHhhcCCHHHHHHHHHHHHHHhcCChHHHHHHHhCCchHHHHHHhhc-CCHHHHHHHHHHHH
Q 036199 584 VETSGCLPSVAELLEIGSEEDQEHAVAILLCLCSQRDQYCKLVMNEGVIPSLVKISVY-GNDKAKVSALELRR 655 (710)
Q Consensus 584 ~~~~g~I~~Lv~lL~~~s~~~ke~A~~aL~~Lc~~~~~~~~~v~~~G~v~~Lv~L~~~-gt~~~k~kA~~LL~ 655 (710)
. ...++.|+..+...+ ++..|+.+|..+.. ..++|.|..++.+ .++.....+...|+
T Consensus 221 -~-~~~~~~L~~~l~d~~--vr~~a~~aL~~i~~-----------~~~~~~L~~~l~~~~~~~~~~~~~~~l~ 278 (280)
T 1oyz_A 221 -D-KRVLSVLCDELKKNT--VYDDIIEAAGELGD-----------KTLLPVLDTMLYKFDDNEIITSAIDKLK 278 (280)
T ss_dssp -C-GGGHHHHHHHHTSSS--CCHHHHHHHHHHCC-----------GGGHHHHHHHHTTSSCCHHHHHHHHHHT
T ss_pred -C-HhhHHHHHHHhcCcc--HHHHHHHHHHhcCc-----------hhhhHHHHHHHhcCCCcHHHHHHHHHhh
Confidence 2 457888888887644 77888888877643 2568888887754 45555555555543
|
| >4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.60 E-value=1.2e-08 Score=93.61 Aligned_cols=55 Identities=20% Similarity=0.427 Sum_probs=49.2
Q ss_pred CCcccccCCccccCCc-------eecCCCCccchhhHHHHhhhCCCCCCCCCCccCCCCCccc
Q 036199 266 PEVFKCPLSLRLMYDP-------VVIESGQTFERMWIQKWFEEGNHTCPKTKMKLVCQSLTPN 321 (710)
Q Consensus 266 p~~f~CPI~~~~m~DP-------V~~~~G~ty~r~~I~~w~~~g~~~cP~t~~~l~~~~l~pN 321 (710)
++++.||||++.|.|| |+++|||+|++.||.+|+.. ..+||.|++++....+.++
T Consensus 5 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~~l~~l 66 (133)
T 4ap4_A 5 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCPTCRKKINHKRYHPI 66 (133)
T ss_dssp CCSCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTT-CSBCTTTCCBCTTTCEEEC
T ss_pred CCCCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHh-CCCCCCCCCcCcccccccc
Confidence 5689999999999999 99999999999999999985 4589999999987776665
|
| >2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.59 E-value=1.3e-08 Score=82.98 Aligned_cols=52 Identities=15% Similarity=0.459 Sum_probs=46.1
Q ss_pred CCCCcccccCCccccCCceecCCCCccchhhHHHHhhhCCCCCCCCCCccCCCC
Q 036199 264 IIPEVFKCPLSLRLMYDPVVIESGQTFERMWIQKWFEEGNHTCPKTKMKLVCQS 317 (710)
Q Consensus 264 ~~p~~f~CPI~~~~m~DPV~~~~G~ty~r~~I~~w~~~g~~~cP~t~~~l~~~~ 317 (710)
...+++.||||++.+.+ ++++|||+|++.||.+|+. .+.+||.|++++....
T Consensus 11 ~~~~~~~C~IC~~~~~~-~~~~CgH~fc~~Ci~~~~~-~~~~CP~Cr~~~~~~~ 62 (70)
T 2ecn_A 11 QLTDEEECCICMDGRAD-LILPCAHSFCQKCIDKWSD-RHRNCPICRLQMTGAN 62 (70)
T ss_dssp CCCCCCCCSSSCCSCCS-EEETTTEEECHHHHHHSSC-CCSSCHHHHHCTTCCC
T ss_pred cCCCCCCCeeCCcCccC-cccCCCCcccHHHHHHHHH-CcCcCCCcCCcccCCC
Confidence 45678999999999999 9999999999999999998 5789999998887543
|
| >2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A | Back alignment and structure |
|---|
Probab=98.59 E-value=3.2e-08 Score=76.46 Aligned_cols=47 Identities=21% Similarity=0.389 Sum_probs=41.9
Q ss_pred CcccccCCccccCC----ceecCCCCccchhhHHHHhhhCCCCCCCCCCccC
Q 036199 267 EVFKCPLSLRLMYD----PVVIESGQTFERMWIQKWFEEGNHTCPKTKMKLV 314 (710)
Q Consensus 267 ~~f~CPI~~~~m~D----PV~~~~G~ty~r~~I~~w~~~g~~~cP~t~~~l~ 314 (710)
+++.||||++.+.+ |++++|||+|++.||.+|+..+ .+||.|++++.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~-~~CP~Cr~~~~ 54 (55)
T 2ecm_A 4 GSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEG-YRCPLCSGPSS 54 (55)
T ss_dssp CCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHHT-CCCTTSCCSSC
T ss_pred CCCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHcC-CcCCCCCCcCC
Confidence 45789999999977 8889999999999999999875 78999998764
|
| >1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1 | Back alignment and structure |
|---|
Probab=98.59 E-value=3.2e-08 Score=80.09 Aligned_cols=48 Identities=23% Similarity=0.476 Sum_probs=42.2
Q ss_pred CcccccCCccccCCc-eecCCCCccchhhHHHHhhhCCCCCCCCCCccCC
Q 036199 267 EVFKCPLSLRLMYDP-VVIESGQTFERMWIQKWFEEGNHTCPKTKMKLVC 315 (710)
Q Consensus 267 ~~f~CPI~~~~m~DP-V~~~~G~ty~r~~I~~w~~~g~~~cP~t~~~l~~ 315 (710)
.+..||||++.+.|| ++++|||+|++.||.+|+.. +.+||.|++++..
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~C~H~fc~~Ci~~~~~~-~~~CP~Cr~~~~~ 52 (68)
T 1chc_A 4 VAERCPICLEDPSNYSMALPCLHAFCYVCITRWIRQ-NPTCPLCKVPVES 52 (68)
T ss_dssp CCCCCSSCCSCCCSCEEETTTTEEESTTHHHHHHHH-SCSTTTTCCCCCC
T ss_pred CCCCCeeCCccccCCcEecCCCCeeHHHHHHHHHhC-cCcCcCCChhhHh
Confidence 457899999999998 77899999999999999975 4689999988764
|
| >2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.56 E-value=6.9e-08 Score=79.52 Aligned_cols=52 Identities=19% Similarity=0.326 Sum_probs=44.8
Q ss_pred CCCCcccccCCccccCCceec---CCCCccchhhHHHHhhhCCCCCCCCCCccCCC
Q 036199 264 IIPEVFKCPLSLRLMYDPVVI---ESGQTFERMWIQKWFEEGNHTCPKTKMKLVCQ 316 (710)
Q Consensus 264 ~~p~~f~CPI~~~~m~DPV~~---~~G~ty~r~~I~~w~~~g~~~cP~t~~~l~~~ 316 (710)
....++.||||++.|.+|+.+ +|||+|++.||.+|+... .+||.|++++...
T Consensus 11 ~~~~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~~-~~CP~Cr~~~~~~ 65 (74)
T 2ep4_A 11 ELNLHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVR-KVCPLCNMPVLQL 65 (74)
T ss_dssp CCCCSCBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHHHC-SBCTTTCCBCSSC
T ss_pred cCCCCCCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHHcC-CcCCCcCcccccc
Confidence 456678999999999988766 999999999999999864 5899999987653
|
| >1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1 | Back alignment and structure |
|---|
Probab=98.56 E-value=2.1e-08 Score=78.18 Aligned_cols=46 Identities=11% Similarity=0.131 Sum_probs=40.6
Q ss_pred CCcccccCCccccCCceecCCCCccchhhHHHHhhhCCCCCCCCCCccCC
Q 036199 266 PEVFKCPLSLRLMYDPVVIESGQTFERMWIQKWFEEGNHTCPKTKMKLVC 315 (710)
Q Consensus 266 p~~f~CPI~~~~m~DPV~~~~G~ty~r~~I~~w~~~g~~~cP~t~~~l~~ 315 (710)
.+++.||||++.+.|||+++|||+||+.||.+| ...||.|++++..
T Consensus 4 ~~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~~----~~~CP~Cr~~~~~ 49 (56)
T 1bor_A 4 FQFLRCQQCQAEAKCPKLLPCLHTLCSGCLEAS----GMQCPICQAPWPL 49 (56)
T ss_dssp CCCSSCSSSCSSCBCCSCSTTSCCSBTTTCSSS----SSSCSSCCSSSSC
T ss_pred ccCCCceEeCCccCCeEEcCCCCcccHHHHccC----CCCCCcCCcEeec
Confidence 356889999999999999999999999999885 5689999987653
|
| >1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1 | Back alignment and structure |
|---|
Probab=98.50 E-value=9.2e-08 Score=73.89 Aligned_cols=48 Identities=21% Similarity=0.552 Sum_probs=41.9
Q ss_pred CCcccccCCccccCC---ceecC-CCCccchhhHHHHhhhCCCCCCCCCCccC
Q 036199 266 PEVFKCPLSLRLMYD---PVVIE-SGQTFERMWIQKWFEEGNHTCPKTKMKLV 314 (710)
Q Consensus 266 p~~f~CPI~~~~m~D---PV~~~-~G~ty~r~~I~~w~~~g~~~cP~t~~~l~ 314 (710)
.++..||||++.|.+ |++++ |||.|++.||.+|+.. +.+||.|++++.
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~-~~~CP~Cr~~~~ 54 (55)
T 1iym_A 3 DDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGS-HSTCPLCRLTVV 54 (55)
T ss_dssp CCSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTT-CCSCSSSCCCSC
T ss_pred CCCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHc-CCcCcCCCCEeE
Confidence 456789999999999 88887 9999999999999975 678999988653
|
| >2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.47 E-value=1.5e-07 Score=76.29 Aligned_cols=50 Identities=18% Similarity=0.457 Sum_probs=42.4
Q ss_pred CCCcccccCCccccC---CceecCCCCccchhhHHHHhhhCCCCCCCCCCccCC
Q 036199 265 IPEVFKCPLSLRLMY---DPVVIESGQTFERMWIQKWFEEGNHTCPKTKMKLVC 315 (710)
Q Consensus 265 ~p~~f~CPI~~~~m~---DPV~~~~G~ty~r~~I~~w~~~g~~~cP~t~~~l~~ 315 (710)
...+..||||++.|. +|++++|||+|++.||.+|+.. +.+||.|+.++..
T Consensus 11 ~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~-~~~CP~Cr~~~~~ 63 (69)
T 2kiz_A 11 EDTEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLIT-NKKCPICRVDIEA 63 (69)
T ss_dssp TTCCCSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHHH-CSBCTTTCSBSCS
T ss_pred CCCCCCCeeCCccccCCCcEEEeCCCCHHHHHHHHHHHHc-CCCCcCcCccccC
Confidence 355788999999884 5678999999999999999986 4579999988765
|
| >2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.46 E-value=1e-07 Score=82.03 Aligned_cols=50 Identities=14% Similarity=0.394 Sum_probs=44.2
Q ss_pred CCCcccccCCccccCC---ceecCCCCccchhhHHHHhhhCCCCCCCCCCccCC
Q 036199 265 IPEVFKCPLSLRLMYD---PVVIESGQTFERMWIQKWFEEGNHTCPKTKMKLVC 315 (710)
Q Consensus 265 ~p~~f~CPI~~~~m~D---PV~~~~G~ty~r~~I~~w~~~g~~~cP~t~~~l~~ 315 (710)
..++..||||++.|.+ +++++|||.|++.||.+|+.. +.+||.|+.++.+
T Consensus 37 ~~~~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~-~~~CP~Cr~~~~~ 89 (91)
T 2l0b_A 37 VGQEMCCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQK-SGTCPVCRCMFPP 89 (91)
T ss_dssp SSSCSEETTTTEECCTTCEEEEETTTEEEEHHHHHHHHTT-TCBCTTTCCBSSC
T ss_pred cCCCCCCcccChhhcCCCcEEecCCCChHHHHHHHHHHHc-CCcCcCcCccCCC
Confidence 4567899999999988 888999999999999999974 6699999988764
|
| >1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1 | Back alignment and structure |
|---|
Probab=98.44 E-value=1.2e-07 Score=84.95 Aligned_cols=50 Identities=12% Similarity=0.263 Sum_probs=43.0
Q ss_pred CCcccccCCccccCCce------------------ecCCCCccchhhHHHHhh----hCCCCCCCCCCccCC
Q 036199 266 PEVFKCPLSLRLMYDPV------------------VIESGQTFERMWIQKWFE----EGNHTCPKTKMKLVC 315 (710)
Q Consensus 266 p~~f~CPI~~~~m~DPV------------------~~~~G~ty~r~~I~~w~~----~g~~~cP~t~~~l~~ 315 (710)
+.+..||||++.|.+|+ +++|||.|++.||.+|+. ..+.+||.|+..+..
T Consensus 23 ~~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~ 94 (114)
T 1v87_A 23 APEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGE 94 (114)
T ss_dssp CCSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSS
T ss_pred CCCCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCccCC
Confidence 44678999999999987 789999999999999996 346799999987754
|
| >1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.42 E-value=2.4e-07 Score=76.50 Aligned_cols=49 Identities=20% Similarity=0.386 Sum_probs=43.5
Q ss_pred CCcccccCCccccCCc---eecCCCCccchhhHHHHhhhCCCCCCCCCCccCC
Q 036199 266 PEVFKCPLSLRLMYDP---VVIESGQTFERMWIQKWFEEGNHTCPKTKMKLVC 315 (710)
Q Consensus 266 p~~f~CPI~~~~m~DP---V~~~~G~ty~r~~I~~w~~~g~~~cP~t~~~l~~ 315 (710)
.++..||||++.|.+| ++++|||.|++.||.+|+.. +.+||.|++++.+
T Consensus 21 ~~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~-~~~CP~Cr~~~~~ 72 (75)
T 1x4j_A 21 SEQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKA-NRTCPICRADSGP 72 (75)
T ss_dssp SSCCEETTTTEECCBTCEEEEETTTEEEETTHHHHHHHH-CSSCTTTCCCCCC
T ss_pred CCCCCCeECCcccCCCCeEEEECCCCHhHHHHHHHHHHc-CCcCcCcCCcCCC
Confidence 4568899999999998 77899999999999999986 5689999988765
|
| >4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* | Back alignment and structure |
|---|
Probab=98.38 E-value=3.4e-06 Score=100.95 Aligned_cols=264 Identities=12% Similarity=0.068 Sum_probs=178.0
Q ss_pred hhhcCCCHHHHHHHHHHHHHHHccCcccch--hcc--cCCcHHHHHHHhhccccCCCHHHHHHHHHHHHHHhccCCCCCc
Q 036199 388 SRLTELNWDCQCKVIEDYETRLEHDNQVSH--SLS--STNFVEPLIRFLRDARDLHDSRAQRIGCRLLLAFVSKNRSGIP 463 (710)
Q Consensus 388 ~~L~s~~~e~q~~Al~~L~~Lak~~~~~r~--~I~--~~G~I~~LV~lL~s~~~~~d~~~q~~A~~~L~nL~~~~~~k~~ 463 (710)
..+.+.++..+..++..|..+++..+.... .+. -...++.++++|.+ .+..++..|+.+|.++.........
T Consensus 135 ~~l~~~~~~~r~~al~~L~~i~~~~~~~~~~~~~~~~~~~il~~l~~~l~~----~~~~vR~~A~~aL~~~~~~~~~~~~ 210 (852)
T 4fdd_A 135 SLLDSEDYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFLQFFKH----SSPKIRSHAVACVNQFIISRTQALM 210 (852)
T ss_dssp HHHSCSSHHHHHHHHHHHHHHHHHHTTHHHHCSSSSCHHHHHHHHTTTTTC----SSHHHHHHHHHHHHTTTTTTCHHHH
T ss_pred HHHcCCCHHHHHHHHHHHHHHHHHhHHHhchhhhcchHHHHHHHHHHHhcC----CCHHHHHHHHHHHHHHHhcccHHHH
Confidence 456667788888899999888876443311 110 12345556666654 7899999999999877543221111
Q ss_pred cccccchHHHHHHhccCcH--HHHHHHHHHHhccCchhhHHHhhhCcHHHHHHhhcCCCHHHHHHHHHHHHHhccCcccc
Q 036199 464 YLNEDLFSLLASFLHSAAA--TEETLAILVALSSYAYFISKIVASGALASILNMLDSPNGKFQELAIKILHNLSSDVDIQ 541 (710)
Q Consensus 464 i~~~gaI~~LV~lL~s~~~--~~~Aa~~L~~Ls~~~~nk~~I~~~GaI~~LV~LL~~~~~~~~~~A~~aL~nLs~~~en~ 541 (710)
..-.+.++.|+.++.+++. +..|+.+|..|+........-.-.+.++.++.++.+.++.++..|+..+..++.....+
T Consensus 211 ~~~~~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~~~~~~~~~l~~l~~~l~~~~~~~~~~vr~~a~e~l~~l~~~~~~~ 290 (852)
T 4fdd_A 211 LHIDSFIENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPHMHNIVEYMLQRTQDQDENVALEACEFWLTLAEQPICK 290 (852)
T ss_dssp TSHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHCHHHHGGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTSTTHH
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHhcchhHH
Confidence 1123678888888887765 36888888888743221110011357888999999999999999999999998654322
Q ss_pred cccc--cccchhchHHhh-----------cC-------------chHHHHHHHHHHHHhcCcchHHHHHhhcCChHHHHH
Q 036199 542 SHIA--PSEFLPKLVPFL-----------KD-------------ATLAVSCLVILKNMCNTEHARVCVVETSGCLPSVAE 595 (710)
Q Consensus 542 ~~iv--~aG~V~~Lv~lL-----------~~-------------~~~~~~al~iL~nLa~~~e~r~~i~~~~g~I~~Lv~ 595 (710)
..+. -...+|.|+..| .+ -.++..|..+|..|+.... ..+.. ..++.+..
T Consensus 291 ~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~--~~~~~--~l~~~l~~ 366 (852)
T 4fdd_A 291 DVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYR--DELLP--HILPLLKE 366 (852)
T ss_dssp HHHTTTHHHHHHHHHHHTSCCHHHHHHHHC------------CCCCHHHHHHHHHHHHHHHHG--GGGHH--HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCcHhHHHHhcCCcccccccccccccchHHHHHHHHHHHHHHhcc--HHHHH--HHHHHHHH
Confidence 2111 125567777766 22 1235667788888876322 12222 35777888
Q ss_pred HhhcCCHHHHHHHHHHHHHHhcCChHHHHHHHhCCchHHHHHHhhcCCHHHHHHHHHHHHHhhhc
Q 036199 596 LLEIGSEEDQEHAVAILLCLCSQRDQYCKLVMNEGVIPSLVKISVYGNDKAKVSALELRRLLRDV 660 (710)
Q Consensus 596 lL~~~s~~~ke~A~~aL~~Lc~~~~~~~~~v~~~G~v~~Lv~L~~~gt~~~k~kA~~LL~~l~~~ 660 (710)
.+.+.+...|+.|+.+|.+++........ -.-.++++.|+.++.+.++++|..|.+.|..+..+
T Consensus 367 ~l~~~~~~~R~aa~~alg~i~~~~~~~~~-~~l~~~l~~l~~~l~d~~~~Vr~~a~~~l~~l~~~ 430 (852)
T 4fdd_A 367 LLFHHEWVVKESGILVLGAIAEGCMQGMI-PYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHW 430 (852)
T ss_dssp HHTCSSHHHHHHHHHHHHHTTTTTHHHHG-GGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTHHH
T ss_pred HhcCCCHHHHHHHHHHHHHHHhcchHHHH-HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence 88888999999999999999988754222 22356789999999999999999999999987765
|
| >4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A | Back alignment and structure |
|---|
Probab=98.37 E-value=9.1e-08 Score=79.04 Aligned_cols=45 Identities=13% Similarity=0.193 Sum_probs=41.1
Q ss_pred CCcccccCCccccCCceecCCCCc-cchhhHHHHhhhCCCCCCCCCCccCC
Q 036199 266 PEVFKCPLSLRLMYDPVVIESGQT-FERMWIQKWFEEGNHTCPKTKMKLVC 315 (710)
Q Consensus 266 p~~f~CPI~~~~m~DPV~~~~G~t-y~r~~I~~w~~~g~~~cP~t~~~l~~ 315 (710)
.+++.||||++.+.|||+++|||+ ||+.||.+| .+||.|++++..
T Consensus 22 ~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~-----~~CP~Cr~~i~~ 67 (74)
T 4ic3_A 22 QEEKLCKICMDRNIAIVFVPCGHLVTCKQCAEAV-----DKCPMCYTVITF 67 (74)
T ss_dssp HHHTBCTTTSSSBCCEEEETTCCBCCCHHHHTTC-----SBCTTTCCBCSE
T ss_pred ccCCCCCCCCCCCCCEEEcCCCChhHHHHhhhcC-----ccCCCcCcCccC
Confidence 457899999999999999999999 999999999 689999988764
|
| >2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A* | Back alignment and structure |
|---|
Probab=98.36 E-value=1.8e-07 Score=100.46 Aligned_cols=49 Identities=14% Similarity=0.270 Sum_probs=44.9
Q ss_pred cccccCCccccCCceecCCCCccchhhHHHHhhhCCCCCCCCCCccCCC
Q 036199 268 VFKCPLSLRLMYDPVVIESGQTFERMWIQKWFEEGNHTCPKTKMKLVCQ 316 (710)
Q Consensus 268 ~f~CPI~~~~m~DPV~~~~G~ty~r~~I~~w~~~g~~~cP~t~~~l~~~ 316 (710)
...||||++.+.|||+++|||+||+.||..|+..+..+||.|++++...
T Consensus 332 ~~~C~ICle~~~~pv~lpCGH~FC~~Ci~~wl~~~~~~CP~CR~~i~~~ 380 (389)
T 2y1n_A 332 FQLCKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKGT 380 (389)
T ss_dssp SSBCTTTSSSBCCEEEETTCCEECHHHHHHHHHHTCSBCTTTCCBCCEE
T ss_pred CCCCCccCcCCCCeEEeCCCChhhHHHHHHHHhcCCCCCCCCCCccCCc
Confidence 3799999999999999999999999999999987788999999987654
|
| >4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A | Back alignment and structure |
|---|
Probab=98.32 E-value=9.1e-07 Score=103.66 Aligned_cols=152 Identities=15% Similarity=0.141 Sum_probs=122.7
Q ss_pred CcHHHHHHhhcCCCHHHHHHHHHHHHHhccCcccccccccccchhchH-HhhcC--chHHHHHHHHHHHHhc--CcchHH
Q 036199 507 GALASILNMLDSPNGKFQELAIKILHNLSSDVDIQSHIAPSEFLPKLV-PFLKD--ATLAVSCLVILKNMCN--TEHARV 581 (710)
Q Consensus 507 GaI~~LV~LL~~~~~~~~~~A~~aL~nLs~~~en~~~iv~aG~V~~Lv-~lL~~--~~~~~~al~iL~nLa~--~~e~r~ 581 (710)
..|.||++.|.++++..+..|+.||.||+.++.++..+...|+|.+++ .+|.| .++++.|+++|+||+. ..+...
T Consensus 34 ~~i~Pll~~L~S~~~~~r~~A~~al~~l~~~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d~~~ 113 (684)
T 4gmo_A 34 DKILPVLKDLKSPDAKSRTTAAGAIANIVQDAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEADFCV 113 (684)
T ss_dssp HTTHHHHHHHSSSCCSHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHHHHH
T ss_pred hhHHHHHHHcCCCCHHHHHHHHHHHHHHHcCcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCchHHH
Confidence 457778899999999999999999999999989999999999998765 56765 4679999999999997 456677
Q ss_pred HHHhhcCChHHHHHHhhcCC---------------------HHHHHHHHHHHHHHhcCChHHHHHHHhCCchHHHHHHhh
Q 036199 582 CVVETSGCLPSVAELLEIGS---------------------EEDQEHAVAILLCLCSQRDQYCKLVMNEGVIPSLVKISV 640 (710)
Q Consensus 582 ~i~~~~g~I~~Lv~lL~~~s---------------------~~~ke~A~~aL~~Lc~~~~~~~~~v~~~G~v~~Lv~L~~ 640 (710)
.+.+ .|++++|..++.... ....++++.+|++||..+.+....+...|+++.|+.++.
T Consensus 114 ~l~~-~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v~~~~~l~~l~~~L~ 192 (684)
T 4gmo_A 114 HLYR-LDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEAVATKQTILRLLFRLI 192 (684)
T ss_dssp HHHH-TTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHH-cChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhcccHHHHHHHHH
Confidence 8888 789999999886311 123467889999999988777888889999999988864
Q ss_pred cC---CHHHHHHHHHHHHHhhh
Q 036199 641 YG---NDKAKVSALELRRLLRD 659 (710)
Q Consensus 641 ~g---t~~~k~kA~~LL~~l~~ 659 (710)
+. ....+..|..+|..|.+
T Consensus 193 ~~~~~~~~v~~~a~~~L~~ls~ 214 (684)
T 4gmo_A 193 SADIAPQDIYEEAISCLTTLSE 214 (684)
T ss_dssp HHCCSCHHHHHHHHHHHHHHHT
T ss_pred hcCCCcHHHHHHHHHHHHHHhc
Confidence 43 35677777777776654
|
| >4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* | Back alignment and structure |
|---|
Probab=98.31 E-value=1.4e-06 Score=104.30 Aligned_cols=264 Identities=11% Similarity=0.088 Sum_probs=174.4
Q ss_pred hhhcCCCHHHHHHHHHHHHHHHccCcccchhcccCCcHHHHHHHhhccccCCCHHHHHHHHHHHHHHhccCCCCCccccc
Q 036199 388 SRLTELNWDCQCKVIEDYETRLEHDNQVSHSLSSTNFVEPLIRFLRDARDLHDSRAQRIGCRLLLAFVSKNRSGIPYLNE 467 (710)
Q Consensus 388 ~~L~s~~~e~q~~Al~~L~~Lak~~~~~r~~I~~~G~I~~LV~lL~s~~~~~d~~~q~~A~~~L~nL~~~~~~k~~i~~~ 467 (710)
..+.+.+.+++..|+..+..+....++... -.-.++++.++.++.+ .+..++..|+.+|..++........-.-.
T Consensus 181 ~~l~~~~~~vR~~A~~aL~~~~~~~~~~~~-~~~~~~l~~l~~~~~d----~~~~vr~~a~~~L~~l~~~~~~~~~~~l~ 255 (852)
T 4fdd_A 181 QFFKHSSPKIRSHAVACVNQFIISRTQALM-LHIDSFIENLFALAGD----EEPEVRKNVCRALVMLLEVRMDRLLPHMH 255 (852)
T ss_dssp TTTTCSSHHHHHHHHHHHHTTTTTTCHHHH-TSHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCHHHHGGGHH
T ss_pred HHhcCCCHHHHHHHHHHHHHHHhcccHHHH-HHHHHHHHHHHHHcCC----CCHHHHHHHHHHHHHHHHhCHHHHHHHHH
Confidence 345566788899999988776654332110 0113567777777765 78999999999999986543211111113
Q ss_pred cchHHHHHHhccCcH--HHHHHHHHHHhccCchhhHHHhh--hCcHHHHHHhhc-----------C-----------CCH
Q 036199 468 DLFSLLASFLHSAAA--TEETLAILVALSSYAYFISKIVA--SGALASILNMLD-----------S-----------PNG 521 (710)
Q Consensus 468 gaI~~LV~lL~s~~~--~~~Aa~~L~~Ls~~~~nk~~I~~--~GaI~~LV~LL~-----------~-----------~~~ 521 (710)
+.++.++.++.+.+. +..|+..+..++.....+..+.. ...+|.|+..+. + .+-
T Consensus 256 ~l~~~l~~~~~~~~~~vr~~a~e~l~~l~~~~~~~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~ 335 (852)
T 4fdd_A 256 NIVEYMLQRTQDQDENVALEACEFWLTLAEQPICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDW 335 (852)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHTTSTTHHHHHTTTHHHHHHHHHHHTSCCHHHHHHHHC------------CCC
T ss_pred HHHHHHHHHccCCcHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHcCCcHhHHHHhcCCcccccccccccccc
Confidence 578888888877654 35788888888865544433321 356777777772 2 111
Q ss_pred HHHHHHHHHHHHhccCcccccccccccchhchHHhhcCc--hHHHHHHHHHHHHhcCcchHHHHHhhcCChHHHHHHhhc
Q 036199 522 KFQELAIKILHNLSSDVDIQSHIAPSEFLPKLVPFLKDA--TLAVSCLVILKNMCNTEHARVCVVETSGCLPSVAELLEI 599 (710)
Q Consensus 522 ~~~~~A~~aL~nLs~~~en~~~iv~aG~V~~Lv~lL~~~--~~~~~al~iL~nLa~~~e~r~~i~~~~g~I~~Lv~lL~~ 599 (710)
.+++.|+.+|..|+..... .+ -...++.+..++.++ ..++.|+.+|.+++........-.- .+.++.|+..+..
T Consensus 336 ~vr~~a~~~L~~la~~~~~--~~-~~~l~~~l~~~l~~~~~~~R~aa~~alg~i~~~~~~~~~~~l-~~~l~~l~~~l~d 411 (852)
T 4fdd_A 336 NLRKCSAAALDVLANVYRD--EL-LPHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYL-PELIPHLIQCLSD 411 (852)
T ss_dssp CHHHHHHHHHHHHHHHHGG--GG-HHHHHHHHHHHHTCSSHHHHHHHHHHHHHTTTTTHHHHGGGH-HHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHHHHHhccH--HH-HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcchHHHHHHH-HHHHHHHHHHcCC
Confidence 3477888899888853321 12 224566677777554 5688899999999985432211111 4578999999999
Q ss_pred CCHHHHHHHHHHHHHHhcCChHHHHHHHhCCchHHHHHHhhcCCHHHHHHHHHHHHHhhhc
Q 036199 600 GSEEDQEHAVAILLCLCSQRDQYCKLVMNEGVIPSLVKISVYGNDKAKVSALELRRLLRDV 660 (710)
Q Consensus 600 ~s~~~ke~A~~aL~~Lc~~~~~~~~~v~~~G~v~~Lv~L~~~gt~~~k~kA~~LL~~l~~~ 660 (710)
.++.++..|+++|..++...........-.++++.|+..+.+.++++|+.|.+.|..+.+.
T Consensus 412 ~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~L~~~L~d~~~~vr~~a~~aL~~l~~~ 472 (852)
T 4fdd_A 412 KKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNKRVQEAACSAFATLEEE 472 (852)
T ss_dssp SSHHHHHHHHHHHHHTHHHHHHSCTTTTHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Confidence 9999999999999998864321111111235678888888889999999999998877654
|
| >4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.24 E-value=1.7e-07 Score=85.87 Aligned_cols=56 Identities=20% Similarity=0.408 Sum_probs=50.0
Q ss_pred CCcccccCCccccCCc-------eecCCCCccchhhHHHHhhhCCCCCCCCCCccCCCCCcccH
Q 036199 266 PEVFKCPLSLRLMYDP-------VVIESGQTFERMWIQKWFEEGNHTCPKTKMKLVCQSLTPNT 322 (710)
Q Consensus 266 p~~f~CPI~~~~m~DP-------V~~~~G~ty~r~~I~~w~~~g~~~cP~t~~~l~~~~l~pN~ 322 (710)
++.+.||||++.+.+| |+++|||+|+..||.+|+.. +.+||.|+.++....++|++
T Consensus 70 ~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~~~~~~~ 132 (133)
T 4ap4_A 70 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCPTCRKKINHKRYHPIY 132 (133)
T ss_dssp SSSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHH-CSBCTTTCCBCCGGGEEEEC
T ss_pred CCCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHc-CCCCCCCCCcCChhcceeee
Confidence 5678999999999998 89999999999999999986 56999999999888877764
|
| >1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1 | Back alignment and structure |
|---|
Probab=98.19 E-value=2.6e-07 Score=79.96 Aligned_cols=66 Identities=15% Similarity=0.273 Sum_probs=49.7
Q ss_pred CcccccCCccccCCceec---CCCCccchhhHHHHhh----hC---CCCCCC--CCCc--cCCCCCcccHHHHHHHHHHH
Q 036199 267 EVFKCPLSLRLMYDPVVI---ESGQTFERMWIQKWFE----EG---NHTCPK--TKMK--LVCQSLTPNTAMKDLISKWC 332 (710)
Q Consensus 267 ~~f~CPI~~~~m~DPV~~---~~G~ty~r~~I~~w~~----~g---~~~cP~--t~~~--l~~~~l~pN~~l~~~i~~w~ 332 (710)
+.|.||||++.+.+|+++ +|||+||+.||++||. .| ...||. |+.. +.+.. +.+.....+++.|.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~~~~~~~~-i~~ll~~~~~~ky~ 82 (94)
T 1wim_A 4 GSSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQGHLQENE-IECMVAAEIMQRYK 82 (94)
T ss_dssp SBCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSCCEECHHH-HHHHSCHHHHHHHH
T ss_pred CCcCCcccCcccccccceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCCCccCHHH-HHHHCCHHHHHHHH
Confidence 578999999999999886 6999999999999986 34 247999 9887 55433 22333356677776
Q ss_pred H
Q 036199 333 M 333 (710)
Q Consensus 333 ~ 333 (710)
.
T Consensus 83 ~ 83 (94)
T 1wim_A 83 K 83 (94)
T ss_dssp H
T ss_pred H
Confidence 5
|
| >2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.19 E-value=6.3e-07 Score=74.10 Aligned_cols=46 Identities=13% Similarity=0.200 Sum_probs=40.6
Q ss_pred CCcccccCCccccCCceecCCCCc-cchhhHHHHhhhCCCCCCCCCCccCCC
Q 036199 266 PEVFKCPLSLRLMYDPVVIESGQT-FERMWIQKWFEEGNHTCPKTKMKLVCQ 316 (710)
Q Consensus 266 p~~f~CPI~~~~m~DPV~~~~G~t-y~r~~I~~w~~~g~~~cP~t~~~l~~~ 316 (710)
.+++.||||++.+.|||+++|||+ ||+.|++++ ..||.|++++...
T Consensus 23 ~~~~~C~IC~~~~~~~~~~pCgH~~~C~~C~~~~-----~~CP~Cr~~i~~~ 69 (75)
T 2ecg_A 23 QEEKLCKICMDRNIAIVFVPCGHLVTCKQCAEAV-----DKCPMCYTVITFK 69 (75)
T ss_dssp HHHHSCSSSCSSCCCBCCSSSCCCCBCHHHHHHC-----SBCTTTCCBCCCC
T ss_pred CCCCCCCcCCCCCCCEEEecCCCHHHHHHHhhCC-----CCCccCCceecCc
Confidence 557899999999999999999999 999999754 6799999988653
|
| >1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A | Back alignment and structure |
|---|
Probab=98.17 E-value=9.1e-06 Score=89.00 Aligned_cols=266 Identities=12% Similarity=0.098 Sum_probs=171.4
Q ss_pred hhhcCC--CHHHHHHHHHHHHHHHccC-cccchhcccCCcHHHHHHHhhccccCCCHHHHHHHHHHHHHHhccCC-C-CC
Q 036199 388 SRLTEL--NWDCQCKVIEDYETRLEHD-NQVSHSLSSTNFVEPLIRFLRDARDLHDSRAQRIGCRLLLAFVSKNR-S-GI 462 (710)
Q Consensus 388 ~~L~s~--~~e~q~~Al~~L~~Lak~~-~~~r~~I~~~G~I~~LV~lL~s~~~~~d~~~q~~A~~~L~nL~~~~~-~-k~ 462 (710)
..+.+. ++..+..|+..+..++++. ++.... .....++.++..|.+. ..+..++..|+.++.++...-. + ..
T Consensus 135 ~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~-~~~~ll~~l~~~l~~~--~~~~~vr~~a~~~l~~~~~~~~~~~~~ 211 (462)
T 1ibr_B 135 ANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQD-KSNEILTAIIQGMRKE--EPSNNVKLAATNALLNSLEFTKANFDK 211 (462)
T ss_dssp HHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGG-GHHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHTTTTHHHHTS
T ss_pred HHhccCCCCHHHHHHHHHHHHHHHHhCCchhhHh-HHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 455566 7888888999999988753 221111 1124677777777651 1168899999999998642110 0 00
Q ss_pred ccccccchHHHHHHhccCcH--HHHHHHHHHHhccCch--hhHHHhhhCcHHHHHHhhcCCCHHHHHHHHHHHHHhccCc
Q 036199 463 PYLNEDLFSLLASFLHSAAA--TEETLAILVALSSYAY--FISKIVASGALASILNMLDSPNGKFQELAIKILHNLSSDV 538 (710)
Q Consensus 463 ~i~~~gaI~~LV~lL~s~~~--~~~Aa~~L~~Ls~~~~--nk~~I~~~GaI~~LV~LL~~~~~~~~~~A~~aL~nLs~~~ 538 (710)
.....-.++.|...+.+++. +..++.+|..+..... ....+ ..+.++.++..+.+.++.++..|+..+.+++...
T Consensus 212 ~~~~~~l~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~v~~~a~~~l~~~~~~~ 290 (462)
T 1ibr_B 212 ESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYM-GPALFAITIEAMKSDIDEVALQGIEFWSNVCDEE 290 (462)
T ss_dssp HHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGCTTTT-TTTHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHH
Confidence 00011135556666665554 2577777777763221 11111 1167888888888889999999999988887532
Q ss_pred ------------c------ccccccc---ccchhchHHhhcC---------chHHHHHHHHHHHHhcCcchHHHHHhhcC
Q 036199 539 ------------D------IQSHIAP---SEFLPKLVPFLKD---------ATLAVSCLVILKNMCNTEHARVCVVETSG 588 (710)
Q Consensus 539 ------------e------n~~~iv~---aG~V~~Lv~lL~~---------~~~~~~al~iL~nLa~~~e~r~~i~~~~g 588 (710)
+ ....+++ ...+|.|+..|.+ ...+..|..+|..|+..-. ..+.. .
T Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~--~~~~~--~ 366 (462)
T 1ibr_B 291 MDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCE--DDIVP--H 366 (462)
T ss_dssp HHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTT--TTHHH--H
T ss_pred HHHHHhcccccccCCCccchhHHHHHHHhhhccHHHHHHHHhcccccccccchHHHHHHHHHHHHHHhcc--HHHHH--H
Confidence 0 0111111 3356666666632 2467788888888887322 12332 3
Q ss_pred ChHHHHHHhhcCCHHHHHHHHHHHHHHhcCCh-HHHHHHHhCCchHHHHHHhhcCCHHHHHHHHHHHHHhhhccC
Q 036199 589 CLPSVAELLEIGSEEDQEHAVAILLCLCSQRD-QYCKLVMNEGVIPSLVKISVYGNDKAKVSALELRRLLRDVAY 662 (710)
Q Consensus 589 ~I~~Lv~lL~~~s~~~ke~A~~aL~~Lc~~~~-~~~~~v~~~G~v~~Lv~L~~~gt~~~k~kA~~LL~~l~~~~~ 662 (710)
.++.+...+...+...|+.|+.+|..++.+.. ..... .-..++|.|+.++.+.++++|..|.+.|..+..+-.
T Consensus 367 ~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~-~l~~~~~~l~~~l~d~~~~Vr~~a~~~l~~~~~~~~ 440 (462)
T 1ibr_B 367 VLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKP-LVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLP 440 (462)
T ss_dssp HHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCT-TTTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHGG
T ss_pred HHHHHHHHhcCCChHHHHHHHHHHHHHhcCCcHHHHHH-HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcc
Confidence 56777888888899999999999999997653 11111 115689999999999999999999999998887643
|
| >2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B | Back alignment and structure |
|---|
Probab=98.16 E-value=8.7e-05 Score=85.25 Aligned_cols=254 Identities=13% Similarity=0.090 Sum_probs=165.5
Q ss_pred hhhcCCCHHHHHHHHHHHHHHHccCcccchhcccCCcHHHHHHHhhccccCCCHHHHHHHHHHHHHHhccCCCC-Ccccc
Q 036199 388 SRLTELNWDCQCKVIEDYETRLEHDNQVSHSLSSTNFVEPLIRFLRDARDLHDSRAQRIGCRLLLAFVSKNRSG-IPYLN 466 (710)
Q Consensus 388 ~~L~s~~~e~q~~Al~~L~~Lak~~~~~r~~I~~~G~I~~LV~lL~s~~~~~d~~~q~~A~~~L~nL~~~~~~k-~~i~~ 466 (710)
..|.+.++.++..|+..+..+.+.+++. +...++++.|..+|.+ .|+.++.+|+.+|..+..++... .....
T Consensus 128 ~~L~d~~~~VRk~A~~al~~i~~~~p~~---~~~~~~~~~l~~lL~d----~d~~V~~~A~~aL~~i~~~~~~~~~~~l~ 200 (591)
T 2vgl_B 128 KCLKDEDPYVRKTAAVCVAKLHDINAQM---VEDQGFLDSLRDLIAD----SNPMVVANAVAALSEISESHPNSNLLDLN 200 (591)
T ss_dssp HHSSCSCHHHHHHHHHHHHHHHHSSCCC---HHHHHHHHHHHHTTSC----SCHHHHHHHHHHHHHHTTSCCSCCSCCCH
T ss_pred HHcCCCChHHHHHHHHHHHHHHhhChhh---cccccHHHHHHHHhCC----CChhHHHHHHHHHHHHHhhCCCccchhcc
Confidence 4566778999999999999998866552 2335788999999976 78999999999999997654322 22234
Q ss_pred ccchHHHHHHhccCcHH--HHHHHHHHHhccCchhhHHHhhhCcHHHHHHhhcCCCHHHHHHHHHHHHHhccC----ccc
Q 036199 467 EDLFSLLASFLHSAAAT--EETLAILVALSSYAYFISKIVASGALASILNMLDSPNGKFQELAIKILHNLSSD----VDI 540 (710)
Q Consensus 467 ~gaI~~LV~lL~s~~~~--~~Aa~~L~~Ls~~~~nk~~I~~~GaI~~LV~LL~~~~~~~~~~A~~aL~nLs~~----~en 540 (710)
.+.+..|+..|...+.. ...+.+|..+...+..- ....++.+..+|++.++.++..|+.++.++... ++.
T Consensus 201 ~~~~~~Ll~~l~~~~~~~q~~il~~l~~l~~~~~~~----~~~~l~~l~~~l~~~~~~V~~ea~~~i~~l~~~~~~~~~~ 276 (591)
T 2vgl_B 201 PQNINKLLTALNECTEWGQIFILDCLSNYNPKDDRE----AQSICERVTPRLSHANSAVVLSAVKVLMKFLELLPKDSDY 276 (591)
T ss_dssp HHHHHHHHHHHHHCCHHHHHHHHHHHHTSCCCSHHH----HHHHHHHHTTCSCSSTTHHHHHHHHHHHHSCCSCCBTTBS
T ss_pred HHHHHHHHHcCCCCCchHHHHHHHHHHHhCCCChHH----HHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhccCCCHHH
Confidence 56788888888766543 35556666665332211 134678888888888889999999999998742 222
Q ss_pred ccccccccchhchHHhhc-CchHHHHHHHHHHHHhc-Ccch-------------------HHHH------HhhcC----C
Q 036199 541 QSHIAPSEFLPKLVPFLK-DATLAVSCLVILKNMCN-TEHA-------------------RVCV------VETSG----C 589 (710)
Q Consensus 541 ~~~iv~aG~V~~Lv~lL~-~~~~~~~al~iL~nLa~-~~e~-------------------r~~i------~~~~g----~ 589 (710)
... +-..++++|+.++. +++++..|+..|..++. +++. +.++ +. .. .
T Consensus 277 ~~~-~~~~~~~~L~~L~~~d~~vr~~aL~~l~~i~~~~p~~~~~~~~~~~~~~~d~~~Ir~~al~~L~~l~~-~~nv~~i 354 (591)
T 2vgl_B 277 YNM-LLKKLAPPLVTLLSGEPEVQYVALRNINLIVQKRPEILKQEIKVFFVKYNDPIYVKLEKLDIMIRLAS-QANIAQV 354 (591)
T ss_dssp HHH-HHHHTHHHHHHHTTSCHHHHHHHHHHHHHHHHHCCSTTTTCTTTTSCCTTSCHHHHHHHHHHHHHTCC-SSTHHHH
T ss_pred HHH-HHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhChHHHHHHHHhheeccCChHHHHHHHHHHHHHHCC-hhhHHHH
Confidence 111 12344566665553 34556666666666653 1110 1111 11 12 2
Q ss_pred hHHHHHHhhcCCHHHHHHHHHHHHHHhcCChHHHHHHHhCCchHHHHHHhhcCCHHHHHHHHHHHH-Hhhh
Q 036199 590 LPSVAELLEIGSEEDQEHAVAILLCLCSQRDQYCKLVMNEGVIPSLVKISVYGNDKAKVSALELRR-LLRD 659 (710)
Q Consensus 590 I~~Lv~lL~~~s~~~ke~A~~aL~~Lc~~~~~~~~~v~~~G~v~~Lv~L~~~gt~~~k~kA~~LL~-~l~~ 659 (710)
++.|...+...+...+..++.++..+|...+... ...++.|+.++.+..+.++..+...++ +++.
T Consensus 355 v~~L~~~l~~~d~~~r~~~v~aI~~la~~~~~~~-----~~~v~~Ll~ll~~~~~~v~~e~i~~l~~ii~~ 420 (591)
T 2vgl_B 355 LAELKEYATEVDVDFVRKAVRAIGRCAIKVEQSA-----ERCVSTLLDLIQTKVNYVVQEAIVVIRDIFRK 420 (591)
T ss_dssp HHHHHHHTTSSCHHHHHHHHHHHHHHHTTCHHHH-----HHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHhChhHH-----HHHHHHHHHHHcccchHHHHHHHHHHHHHHHH
Confidence 3445556667899999999999999998775332 235688888888887777766655555 3443
|
| >2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B | Back alignment and structure |
|---|
Probab=98.04 E-value=2.6e-05 Score=89.63 Aligned_cols=248 Identities=14% Similarity=0.101 Sum_probs=165.2
Q ss_pred hhcCCCHHHHHHHHHHHHHHHccCcccchhcccCCcHHHHHHHhhccccCCCHHHHHHHHHHHHHHhccCCCCCcccccc
Q 036199 389 RLTELNWDCQCKVIEDYETRLEHDNQVSHSLSSTNFVEPLIRFLRDARDLHDSRAQRIGCRLLLAFVSKNRSGIPYLNED 468 (710)
Q Consensus 389 ~L~s~~~e~q~~Al~~L~~Lak~~~~~r~~I~~~G~I~~LV~lL~s~~~~~d~~~q~~A~~~L~nL~~~~~~k~~i~~~g 468 (710)
.+.+.+.+.+.-+...+..+++.+++.. ..++..|..+..+.|+.++..|+.+|.++.. .-+...
T Consensus 57 l~~s~~~~~Krl~yl~l~~~~~~~~e~~---------~l~~n~l~kdL~~~n~~ir~~AL~~L~~i~~------~~~~~~ 121 (591)
T 2vgl_B 57 CMQTDNLELKKLVYLYLMNYAKSQPDMA---------IMAVNSFVKDCEDPNPLIRALAVRTMGCIRV------DKITEY 121 (591)
T ss_dssp TTSSSCHHHHHHHHHHHHHHHHHSHHHH---------HTTHHHHGGGSSSSSHHHHHHHHHHHHTCCS------GGGHHH
T ss_pred HhCCCCHHHHHHHHHHHHHHcccCchHH---------HHHHHHHHHHcCCCCHHHHHHHHHHHHcCCh------HHHHHH
Confidence 3455667777666667777776555432 1223333333344789999888888877631 113456
Q ss_pred chHHHHHHhccCcH--HHHHHHHHHHhccCchhhHHHhhhCcHHHHHHhhcCCCHHHHHHHHHHHHHhccCcccc-cccc
Q 036199 469 LFSLLASFLHSAAA--TEETLAILVALSSYAYFISKIVASGALASILNMLDSPNGKFQELAIKILHNLSSDVDIQ-SHIA 545 (710)
Q Consensus 469 aI~~LV~lL~s~~~--~~~Aa~~L~~Ls~~~~nk~~I~~~GaI~~LV~LL~~~~~~~~~~A~~aL~nLs~~~en~-~~iv 545 (710)
.++.+..+|.+.+. +..|+.+|..+.... ...+...+.++.|..+|.+.++.++..|+.+|..++...... ..-.
T Consensus 122 l~~~l~~~L~d~~~~VRk~A~~al~~i~~~~--p~~~~~~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~~~~~~~~~~~l 199 (591)
T 2vgl_B 122 LCEPLRKCLKDEDPYVRKTAAVCVAKLHDIN--AQMVEDQGFLDSLRDLIADSNPMVVANAVAALSEISESHPNSNLLDL 199 (591)
T ss_dssp HHHHHHHHSSCSCHHHHHHHHHHHHHHHHSS--CCCHHHHHHHHHHHHTTSCSCHHHHHHHHHHHHHHTTSCCSCCSCCC
T ss_pred HHHHHHHHcCCCChHHHHHHHHHHHHHHhhC--hhhcccccHHHHHHHHhCCCChhHHHHHHHHHHHHHhhCCCccchhc
Confidence 77889999988775 468888888887422 123334578999999999999999999999999999754322 1222
Q ss_pred cccchhchHHhhcC--chHHHHHHHHHHHHhcCcchHHHHHhhcCChHHHHHHhhcCCHHHHHHHHHHHHHHhcC---Ch
Q 036199 546 PSEFLPKLVPFLKD--ATLAVSCLVILKNMCNTEHARVCVVETSGCLPSVAELLEIGSEEDQEHAVAILLCLCSQ---RD 620 (710)
Q Consensus 546 ~aG~V~~Lv~lL~~--~~~~~~al~iL~nLa~~~e~r~~i~~~~g~I~~Lv~lL~~~s~~~ke~A~~aL~~Lc~~---~~ 620 (710)
..+.+..|+..+.+ +-.+-..+.+|..++..++ ... ...++.+..++++.++.++-.|+.++..+... ++
T Consensus 200 ~~~~~~~Ll~~l~~~~~~~q~~il~~l~~l~~~~~--~~~---~~~l~~l~~~l~~~~~~V~~ea~~~i~~l~~~~~~~~ 274 (591)
T 2vgl_B 200 NPQNINKLLTALNECTEWGQIFILDCLSNYNPKDD--REA---QSICERVTPRLSHANSAVVLSAVKVLMKFLELLPKDS 274 (591)
T ss_dssp HHHHHHHHHHHHHHCCHHHHHHHHHHHHTSCCCSH--HHH---HHHHHHHTTCSCSSTTHHHHHHHHHHHHSCCSCCBTT
T ss_pred cHHHHHHHHHcCCCCCchHHHHHHHHHHHhCCCCh--HHH---HHHHHHHHHHHcCCChHHHHHHHHHHHHHhhccCCCH
Confidence 34567777777743 3345666777777664322 111 23567777788888999999999999998742 22
Q ss_pred HHHHHHHhCCchHHHHHHhhcCCHHHHHHHHHHHHHhhhc
Q 036199 621 QYCKLVMNEGVIPSLVKISVYGNDKAKVSALELRRLLRDV 660 (710)
Q Consensus 621 ~~~~~v~~~G~v~~Lv~L~~~gt~~~k~kA~~LL~~l~~~ 660 (710)
+..+.+ -..+.++|+.++. +++..|.-|...|..+...
T Consensus 275 ~~~~~~-~~~~~~~L~~L~~-~d~~vr~~aL~~l~~i~~~ 312 (591)
T 2vgl_B 275 DYYNML-LKKLAPPLVTLLS-GEPEVQYVALRNINLIVQK 312 (591)
T ss_dssp BSHHHH-HHHTHHHHHHHTT-SCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHH-HHHHHHHHHHHhc-CCccHHHHHHHHHHHHHHh
Confidence 322222 2345678887764 7888999998888877654
|
| >2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.00 E-value=3.4e-06 Score=70.80 Aligned_cols=48 Identities=25% Similarity=0.506 Sum_probs=39.6
Q ss_pred CcccccCCccccCC--------------ceec-CCCCccchhhHHHHhhhCCCCCCCCCCccCC
Q 036199 267 EVFKCPLSLRLMYD--------------PVVI-ESGQTFERMWIQKWFEEGNHTCPKTKMKLVC 315 (710)
Q Consensus 267 ~~f~CPI~~~~m~D--------------PV~~-~~G~ty~r~~I~~w~~~g~~~cP~t~~~l~~ 315 (710)
++-.|+||++-|.+ ++++ .|||.|.+.||.+|+.. +.+||.|++++..
T Consensus 14 ~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~-~~~CP~CR~~~~~ 76 (81)
T 2ecl_A 14 ECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQ-NNRCPLCQQDWVV 76 (81)
T ss_dssp CCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTT-CCBCTTTCCBCCE
T ss_pred CCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHh-CCCCCCcCCCcch
Confidence 45669999999988 4455 59999999999999986 4699999988753
|
| >1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A | Back alignment and structure |
|---|
Probab=98.00 E-value=3.3e-05 Score=87.35 Aligned_cols=254 Identities=9% Similarity=0.092 Sum_probs=163.9
Q ss_pred hhcCCCHHHHHHHHHHHHHHHccCcccchhcccCCcHHHHHHHhhccccCCCHHHHHHHHHHHHHHhccCCCCCcccccc
Q 036199 389 RLTELNWDCQCKVIEDYETRLEHDNQVSHSLSSTNFVEPLIRFLRDARDLHDSRAQRIGCRLLLAFVSKNRSGIPYLNED 468 (710)
Q Consensus 389 ~L~s~~~e~q~~Al~~L~~Lak~~~~~r~~I~~~G~I~~LV~lL~s~~~~~d~~~q~~A~~~L~nL~~~~~~k~~i~~~g 468 (710)
.+.+.+++++..|+..|..+++.-... ......++.+..++.+ .+..++..|+.+|..++..... ......
T Consensus 172 l~~d~~~~VR~~a~~~l~~l~~~~~~~---~~~~~l~~~l~~~~~d----~~~~vr~~a~~~l~~l~~~~~~--~~~~~~ 242 (588)
T 1b3u_A 172 LCSDDTPMVRRAAASKLGEFAKVLELD---NVKSEIIPMFSNLASD----EQDSVRLLAVEACVNIAQLLPQ--EDLEAL 242 (588)
T ss_dssp HHTCSCHHHHHHHHHHHHHHHHTSCHH---HHHHTHHHHHHHHHTC----SCHHHHTTHHHHHHHHHHHSCH--HHHHHH
T ss_pred HhCCCCHHHHHHHHHHHHHHHHHhcHH---hHHHHHHHHHHHHhcC----CcHHHHHHHHHHHHHHHHhCCH--HHHHHH
Confidence 345668899999999998887653321 1224577888888866 6788999999999888543211 012345
Q ss_pred chHHHHHHhccCcH--HHHHHHHHHHhccCchhhHHHhhhCcHHHHHHhhcCCCHHHHHHHHHHHHHhccCcccc--ccc
Q 036199 469 LFSLLASFLHSAAA--TEETLAILVALSSYAYFISKIVASGALASILNMLDSPNGKFQELAIKILHNLSSDVDIQ--SHI 544 (710)
Q Consensus 469 aI~~LV~lL~s~~~--~~~Aa~~L~~Ls~~~~nk~~I~~~GaI~~LV~LL~~~~~~~~~~A~~aL~nLs~~~en~--~~i 544 (710)
.+|.+..++.+++. +..|+.+|..++..-.. .......++.++.++.+.++.++..|+.+|..++..-... ...
T Consensus 243 ~~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~--~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~ 320 (588)
T 1b3u_A 243 VMPTLRQAAEDKSWRVRYMVADKFTELQKAVGP--EITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENV 320 (588)
T ss_dssp THHHHHHHHTCSSHHHHHHHHHTHHHHHHHHCH--HHHHHTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCTTTHHHH
T ss_pred HHHHHHHHccCCCHHHHHHHHHHHHHHHHHhCc--ccchhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhChhhhhhH
Confidence 78888888877664 35788888777642111 1123467999999999999999999999999988532211 111
Q ss_pred ccccchhchHHhhcCc--hHHHHHHHHHHHHhcCcchHHHHHhhcCChHHHHHHhhcCCHHHHHHHHHHHHHHhcCChHH
Q 036199 545 APSEFLPKLVPFLKDA--TLAVSCLVILKNMCNTEHARVCVVETSGCLPSVAELLEIGSEEDQEHAVAILLCLCSQRDQY 622 (710)
Q Consensus 545 v~aG~V~~Lv~lL~~~--~~~~~al~iL~nLa~~~e~r~~i~~~~g~I~~Lv~lL~~~s~~~ke~A~~aL~~Lc~~~~~~ 622 (710)
.-...+|.+..++.++ .++..++.+|..++..-. ..... ...+|.+..++...++.++..|+.+|..++..-...
T Consensus 321 ~~~~l~p~l~~~l~d~~~~vR~~a~~~l~~l~~~~~-~~~~~--~~l~p~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~ 397 (588)
T 1b3u_A 321 IMSQILPCIKELVSDANQHVKSALASVIMGLSPILG-KDNTI--EHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIR 397 (588)
T ss_dssp HHHTHHHHHHHHHTCSCHHHHHHHHTTGGGGHHHHC-HHHHH--HHTHHHHHHHHTCSCHHHHHHHHTTCHHHHHHSCHH
T ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhh-HhHHH--HHHHHHHHHHhCCCchHHHHHHHHHHHHHHHhcCHH
Confidence 2245667777777664 456777777777765211 11122 246788888888778888888888877776533111
Q ss_pred HHHHHhCCchHHHHHHhhcCCHHHHHHHHHHHHHhhh
Q 036199 623 CKLVMNEGVIPSLVKISVYGNDKAKVSALELRRLLRD 659 (710)
Q Consensus 623 ~~~v~~~G~v~~Lv~L~~~gt~~~k~kA~~LL~~l~~ 659 (710)
.....++|.|..+..+.+.+.|..+...|..+..
T Consensus 398 ---~~~~~~lp~l~~~~~d~~~~vr~~~~~~l~~l~~ 431 (588)
T 1b3u_A 398 ---QLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAG 431 (588)
T ss_dssp ---HHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence 0122345666666666666666666666655543
|
| >1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A | Back alignment and structure |
|---|
Probab=97.99 E-value=1.9e-05 Score=89.25 Aligned_cols=253 Identities=12% Similarity=0.046 Sum_probs=173.2
Q ss_pred hhhcCCCHHHHHHHHHHHHHHHccCcccchhcccCCcHHHHHHHhhccccCCCHHHHHHHHHHHHHHhccCCCCCccccc
Q 036199 388 SRLTELNWDCQCKVIEDYETRLEHDNQVSHSLSSTNFVEPLIRFLRDARDLHDSRAQRIGCRLLLAFVSKNRSGIPYLNE 467 (710)
Q Consensus 388 ~~L~s~~~e~q~~Al~~L~~Lak~~~~~r~~I~~~G~I~~LV~lL~s~~~~~d~~~q~~A~~~L~nL~~~~~~k~~i~~~ 467 (710)
..+.+.++.++..++..|..++..-... ......++.+..+|.+ .+..++..++.+|..+...-.. .....
T Consensus 331 ~~l~d~~~~vR~~a~~~l~~l~~~~~~~---~~~~~l~p~l~~~l~d----~~~~Vr~~a~~~l~~l~~~~~~--~~~~~ 401 (588)
T 1b3u_A 331 ELVSDANQHVKSALASVIMGLSPILGKD---NTIEHLLPLFLAQLKD----ECPEVRLNIISNLDCVNEVIGI--RQLSQ 401 (588)
T ss_dssp HHHTCSCHHHHHHHHTTGGGGHHHHCHH---HHHHHTHHHHHHHHTC----SCHHHHHHHHTTCHHHHHHSCH--HHHHH
T ss_pred HHhcCCCHHHHHHHHHHHHHHHHHhhHh---HHHHHHHHHHHHHhCC----CchHHHHHHHHHHHHHHHhcCH--HHHHH
Confidence 3455667888888777776665421110 1123467888888875 6789999999888877542110 01234
Q ss_pred cchHHHHHHhccCcHH--HHHHHHHHHhccCchhhHHHhhhCcHHHHHHhhcCCCHHHHHHHHHHHHHhccCcccccccc
Q 036199 468 DLFSLLASFLHSAAAT--EETLAILVALSSYAYFISKIVASGALASILNMLDSPNGKFQELAIKILHNLSSDVDIQSHIA 545 (710)
Q Consensus 468 gaI~~LV~lL~s~~~~--~~Aa~~L~~Ls~~~~nk~~I~~~GaI~~LV~LL~~~~~~~~~~A~~aL~nLs~~~en~~~iv 545 (710)
..+|.|+.++.+.+.. ..++.+|..++..-.. .+.....+|.++.+|.+.+..+++.|+.+|..+...-+.. ..
T Consensus 402 ~~lp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~--~~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~--~~ 477 (588)
T 1b3u_A 402 SLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGV--EFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKE--WA 477 (588)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCG--GGCCHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCHH--HH
T ss_pred HHHHHHHHHhcCCCchHHHHHHHHHHHHHHHcCH--HHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCch--hH
Confidence 6788888888776543 5677777766531110 1122346899999999999999999999999998532221 12
Q ss_pred cccchhchHHhhcCc--hHHHHHHHHHHHHhcCcchHHHHHhhcCChHHHHHHhhcCCHHHHHHHHHHHHHHhcCChHHH
Q 036199 546 PSEFLPKLVPFLKDA--TLAVSCLVILKNMCNTEHARVCVVETSGCLPSVAELLEIGSEEDQEHAVAILLCLCSQRDQYC 623 (710)
Q Consensus 546 ~aG~V~~Lv~lL~~~--~~~~~al~iL~nLa~~~e~r~~i~~~~g~I~~Lv~lL~~~s~~~ke~A~~aL~~Lc~~~~~~~ 623 (710)
....+|.|+.++.++ .++..++.++..++..- +...+. ...++.|+..+...++.+|..++.+|..++..-..
T Consensus 478 ~~~llp~l~~~~~~~~~~~R~~a~~~l~~l~~~~-~~~~~~--~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~-- 552 (588)
T 1b3u_A 478 HATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVC-GQDITT--KHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDN-- 552 (588)
T ss_dssp HHHTHHHHHHTTTCSCHHHHHHHHHHHHHHHHHH-HHHHHH--HHTHHHHHHGGGCSCHHHHHHHHHHHHHHGGGSCH--
T ss_pred HHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHhc-CHHHHH--HHHHHHHHhhCCCCCchHHHHHHHHHHHHHHHhch--
Confidence 345677777777654 45777888888887632 122232 35889999999999999999999999999865422
Q ss_pred HHHHhCCchHHHHHHhhcCCHHHHHHHHHHHHHhhh
Q 036199 624 KLVMNEGVIPSLVKISVYGNDKAKVSALELRRLLRD 659 (710)
Q Consensus 624 ~~v~~~G~v~~Lv~L~~~gt~~~k~kA~~LL~~l~~ 659 (710)
......++|.|..+..+.+.++|..|...|..+.+
T Consensus 553 -~~~~~~~~p~l~~l~~d~d~~vr~~a~~al~~l~~ 587 (588)
T 1b3u_A 553 -STLQSEVKPILEKLTQDQDVDVKYFAQEALTVLSL 587 (588)
T ss_dssp -HHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTTC
T ss_pred -hhhHHHHHHHHHHHcCCCchhHHHHHHHHHHHhhc
Confidence 12234567888888899999999999999987753
|
| >2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A | Back alignment and structure |
|---|
Probab=97.89 E-value=5.4e-06 Score=66.24 Aligned_cols=48 Identities=13% Similarity=0.225 Sum_probs=42.4
Q ss_pred CCcccccCCccccCCceec--CCCCc-cchhhHHHHhhhCCCCCCCCCCccC
Q 036199 266 PEVFKCPLSLRLMYDPVVI--ESGQT-FERMWIQKWFEEGNHTCPKTKMKLV 314 (710)
Q Consensus 266 p~~f~CPI~~~~m~DPV~~--~~G~t-y~r~~I~~w~~~g~~~cP~t~~~l~ 314 (710)
+++..|+||++-.+|+|++ +|||. ||..|+.+|+.. +..||.|++++.
T Consensus 6 ~~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~-~~~CPiCR~~i~ 56 (64)
T 2vje_A 6 NAIEPCVICQGRPKNGCIVHGKTGHLMACFTCAKKLKKR-NKPCPVCRQPIQ 56 (64)
T ss_dssp GGGSCCTTTSSSCSCEEEEETTEEEEEECHHHHHHHHHT-TCCCTTTCCCCC
T ss_pred CCcCCCCcCCCCCCCEEEECCCCCChhhHHHHHHHHHHc-CCcCCCcCcchh
Confidence 3567899999999999988 99999 899999999974 568999999875
|
| >3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B | Back alignment and structure |
|---|
Probab=97.88 E-value=3.5e-06 Score=89.95 Aligned_cols=46 Identities=15% Similarity=0.226 Sum_probs=41.6
Q ss_pred CCCcccccCCccccCCceecCCCCc-cchhhHHHHhhhCCCCCCCCCCccCC
Q 036199 265 IPEVFKCPLSLRLMYDPVVIESGQT-FERMWIQKWFEEGNHTCPKTKMKLVC 315 (710)
Q Consensus 265 ~p~~f~CPI~~~~m~DPV~~~~G~t-y~r~~I~~w~~~g~~~cP~t~~~l~~ 315 (710)
+.+++.||||++.+.|||+++|||+ ||+.||.+| ..||.|+.++..
T Consensus 292 l~~~~~C~IC~~~~~~~v~lpCgH~~fC~~C~~~~-----~~CP~CR~~i~~ 338 (345)
T 3t6p_A 292 LQEERTCKVCMDKEVSVVFIPCGHLVVCQECAPSL-----RKCPICRGIIKG 338 (345)
T ss_dssp HHTTCBCTTTSSSBCCEEEETTCCEEECTTTGGGC-----SBCTTTCCBCCE
T ss_pred CcCCCCCCccCCcCCceEEcCCCChhHhHHHHhcC-----CcCCCCCCCccC
Confidence 3567999999999999999999999 999999999 579999988764
|
| >2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B* | Back alignment and structure |
|---|
Probab=97.87 E-value=5.3e-06 Score=66.08 Aligned_cols=47 Identities=19% Similarity=0.287 Sum_probs=41.7
Q ss_pred cccccCCccccCCceec--CCCCc-cchhhHHHHhhhCCCCCCCCCCccCC
Q 036199 268 VFKCPLSLRLMYDPVVI--ESGQT-FERMWIQKWFEEGNHTCPKTKMKLVC 315 (710)
Q Consensus 268 ~f~CPI~~~~m~DPV~~--~~G~t-y~r~~I~~w~~~g~~~cP~t~~~l~~ 315 (710)
+..|+||++-.+|||++ +|||. ||..|+.+|+..+ ..||.|++++..
T Consensus 7 ~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~~-~~CPiCR~~i~~ 56 (63)
T 2vje_B 7 LKPCSLCEKRPRDGNIIHGRTGHLVTCFHCARRLKKAG-ASCPICKKEIQL 56 (63)
T ss_dssp GSBCTTTSSSBSCEEEEETTEEEEEECHHHHHHHHHTT-CBCTTTCCBCCE
T ss_pred CCCCcccCCcCCCeEEEecCCCCHhHHHHHHHHHHHhC-CcCCCcCchhhc
Confidence 46799999999999998 99998 9999999998754 689999998753
|
| >3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A | Back alignment and structure |
|---|
Probab=97.82 E-value=1.2e-05 Score=71.11 Aligned_cols=46 Identities=17% Similarity=0.371 Sum_probs=39.5
Q ss_pred cccccCCccccCCc------------------eecCCCCccchhhHHHHhhhCCCCCCCCCCccC
Q 036199 268 VFKCPLSLRLMYDP------------------VVIESGQTFERMWIQKWFEEGNHTCPKTKMKLV 314 (710)
Q Consensus 268 ~f~CPI~~~~m~DP------------------V~~~~G~ty~r~~I~~w~~~g~~~cP~t~~~l~ 314 (710)
+-.|+||++-|.+| +.++|||.|.+.||.+|+.. +.+||.|++.+.
T Consensus 37 ~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~-~~~CP~Cr~~~~ 100 (106)
T 3dpl_R 37 VDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT-RQVCPLDNREWE 100 (106)
T ss_dssp SCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTT-CSBCSSSCSBCC
T ss_pred CCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHc-CCcCcCCCCcce
Confidence 45699999999987 34699999999999999985 789999998753
|
| >2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A | Back alignment and structure |
|---|
Probab=97.82 E-value=4.7e-06 Score=69.57 Aligned_cols=46 Identities=13% Similarity=0.215 Sum_probs=40.8
Q ss_pred CCcccccCCccccCCceecCCCCc-cchhhHHHHhhhCCCCCCCCCCccCCC
Q 036199 266 PEVFKCPLSLRLMYDPVVIESGQT-FERMWIQKWFEEGNHTCPKTKMKLVCQ 316 (710)
Q Consensus 266 p~~f~CPI~~~~m~DPV~~~~G~t-y~r~~I~~w~~~g~~~cP~t~~~l~~~ 316 (710)
.++..|+||++.+.|||.++|||. ||+.|+.+|. .||.|++++...
T Consensus 16 ~~~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~~~-----~CP~Cr~~i~~~ 62 (79)
T 2yho_A 16 KEAMLCMVCCEEEINSTFCPCGHTVCCESCAAQLQ-----SCPVCRSRVEHV 62 (79)
T ss_dssp HHHTBCTTTSSSBCCEEEETTCBCCBCHHHHTTCS-----BCTTTCCBCCEE
T ss_pred CCCCEeEEeCcccCcEEEECCCCHHHHHHHHHhcC-----cCCCCCchhhCe
Confidence 456789999999999999999999 9999999884 799999987653
|
| >2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.68 E-value=5.6e-05 Score=61.07 Aligned_cols=45 Identities=11% Similarity=0.120 Sum_probs=39.9
Q ss_pred CCcccccCCccccCCceecCCCCc-cchhhHHHHhhhCCCCCCCCCCccCC
Q 036199 266 PEVFKCPLSLRLMYDPVVIESGQT-FERMWIQKWFEEGNHTCPKTKMKLVC 315 (710)
Q Consensus 266 p~~f~CPI~~~~m~DPV~~~~G~t-y~r~~I~~w~~~g~~~cP~t~~~l~~ 315 (710)
.++..|+||++-..|||.++|||. ||..|+.+ ...||.|++++..
T Consensus 13 ~~~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~-----~~~CP~CR~~i~~ 58 (68)
T 2ea5_A 13 ENSKDCVVCQNGTVNWVLLPCRHTCLCDGCVKY-----FQQCPMCRQFVQE 58 (68)
T ss_dssp CCSSCCSSSSSSCCCCEETTTTBCCSCTTHHHH-----CSSCTTTCCCCCC
T ss_pred CCCCCCCCcCcCCCCEEEECCCChhhhHHHHhc-----CCCCCCCCcchhc
Confidence 456889999999999999999999 99999984 3689999998765
|
| >2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.62 E-value=6.4e-05 Score=62.77 Aligned_cols=51 Identities=12% Similarity=0.299 Sum_probs=42.5
Q ss_pred CCcccccCCcccc--CCceecCCC-----CccchhhHHHHhhh-CCCCCCCCCCccCCC
Q 036199 266 PEVFKCPLSLRLM--YDPVVIESG-----QTFERMWIQKWFEE-GNHTCPKTKMKLVCQ 316 (710)
Q Consensus 266 p~~f~CPI~~~~m--~DPV~~~~G-----~ty~r~~I~~w~~~-g~~~cP~t~~~l~~~ 316 (710)
.++-.|+||++-+ .+|++++|+ |.|-+.||++|+.. +..+||.|+..+...
T Consensus 13 ~~~~~C~IC~~~~~~~~~l~~pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~~~ 71 (80)
T 2d8s_A 13 SSQDICRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIME 71 (80)
T ss_dssp TTSCCCSSSCCCCCSSSCEECSSSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCCCC
T ss_pred CCCCCCeEcCccccCCCeeEeccccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeeecC
Confidence 4557899999776 579999996 99999999999985 457999999988643
|
| >1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A | Back alignment and structure |
|---|
Probab=97.62 E-value=0.00037 Score=76.08 Aligned_cols=260 Identities=10% Similarity=0.068 Sum_probs=165.8
Q ss_pred hhhcCCCHHHHHHHHHHHHHHHccCcccchhcccCCcHHHHHHHhhccccCCCHHHHHHHHHHHHHHhccCC--------
Q 036199 388 SRLTELNWDCQCKVIEDYETRLEHDNQVSHSLSSTNFVEPLIRFLRDARDLHDSRAQRIGCRLLLAFVSKNR-------- 459 (710)
Q Consensus 388 ~~L~s~~~e~q~~Al~~L~~Lak~~~~~r~~I~~~G~I~~LV~lL~s~~~~~d~~~q~~A~~~L~nL~~~~~-------- 459 (710)
..+.+.+.+.+.+|-..|..+.+.+ ..+++..|+.+|.+. +.+..++..|+.+|.++.....
T Consensus 8 ~~~~s~d~~~r~~Ae~~L~~~~~~~--------~~~~~~~L~~il~~~--~~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~ 77 (462)
T 1ibr_B 8 EKTVSPDRLELEAAQKFLERAAVEN--------LPTFLVELSRVLANP--GNSQVARVAAGLQIKNSLTSKDPDIKAQYQ 77 (462)
T ss_dssp HHTTCSCHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHCT--TSCHHHHHHHHHHHHHHHCCSSHHHHHHHH
T ss_pred HHhcCCCHHHHHHHHHHHHHHHhhC--------hHHHHHHHHHHHHcC--CCChHHHHHHHHHHHHhccccchHHHHHHH
Confidence 4455667788888888887755421 246788899998762 2468889999999999864321
Q ss_pred ---CCCcc-ccccchHHHHHHhccCcHH-HHHHHHHHHhccCchhhHHHhhhCcHHHHHHhhcCC--CHHHHHHHHHHHH
Q 036199 460 ---SGIPY-LNEDLFSLLASFLHSAAAT-EETLAILVALSSYAYFISKIVASGALASILNMLDSP--NGKFQELAIKILH 532 (710)
Q Consensus 460 ---~k~~i-~~~gaI~~LV~lL~s~~~~-~~Aa~~L~~Ls~~~~nk~~I~~~GaI~~LV~LL~~~--~~~~~~~A~~aL~ 532 (710)
....- .....-..|+..|.++... ..++.++..++..+.... .-.+.+|.|+..+.++ ++..+..|+.+|.
T Consensus 78 ~~~~~l~~~~~~~ik~~ll~~l~~~~~~v~~~~~~i~~ia~~~~~~~--~w~~ll~~L~~~l~~~~~~~~~r~~al~~l~ 155 (462)
T 1ibr_B 78 QRWLAIDANARREVKNYVLQTLGTETYRPSSASQCVAGIACAEIPVN--QWPELIPQLVANVTNPNSTEHMKESTLEAIG 155 (462)
T ss_dssp HHHHTSCHHHHHHHHHHHHHHTTCCCSSSCSHHHHHHHHHHHHGGGT--CCTTHHHHHHHHHHCTTCCHHHHHHHHHHHH
T ss_pred hhhhcCCHHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHHHhcccc--ccHHHHHHHHHHhccCCCCHHHHHHHHHHHH
Confidence 01100 1123344566666654321 445556666653321100 1157899999999888 8999999999999
Q ss_pred HhccCc-ccccccccccchhchHHhhcC----chHHHHHHHHHHHHhcCcc-hH-HHHHhhcCChHHHHHHhhcCCHHHH
Q 036199 533 NLSSDV-DIQSHIAPSEFLPKLVPFLKD----ATLAVSCLVILKNMCNTEH-AR-VCVVETSGCLPSVAELLEIGSEEDQ 605 (710)
Q Consensus 533 nLs~~~-en~~~iv~aG~V~~Lv~lL~~----~~~~~~al~iL~nLa~~~e-~r-~~i~~~~g~I~~Lv~lL~~~s~~~k 605 (710)
.++..- .....-.-...++.++..|.+ +.++..|+.++.++...-+ .- ..... ...++.|...+...++..+
T Consensus 156 ~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~-~~l~~~l~~~~~~~~~~vr 234 (462)
T 1ibr_B 156 YICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESER-HFIMQVVCEATQCPDTRVR 234 (462)
T ss_dssp HHHHHSCGGGTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHH-HHHHHHHHHHTTCSSHHHH
T ss_pred HHHHhCCchhhHhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhHHH-HHHHHHHHHhcCCCCHHHH
Confidence 998532 111111113467777777854 3567889999988765211 10 00111 1235666667777899999
Q ss_pred HHHHHHHHHHhcCChHHHHHHHhCCchHHHHHHhhcCCHHHHHHHHHHHHHhhhc
Q 036199 606 EHAVAILLCLCSQRDQYCKLVMNEGVIPSLVKISVYGNDKAKVSALELRRLLRDV 660 (710)
Q Consensus 606 e~A~~aL~~Lc~~~~~~~~~v~~~G~v~~Lv~L~~~gt~~~k~kA~~LL~~l~~~ 660 (710)
..++.+|..++...+..-...+..++++.++....+.++.++..|...+..+.+.
T Consensus 235 ~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~l~~~~~~ 289 (462)
T 1ibr_B 235 VAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDE 289 (462)
T ss_dssp HHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHHHCSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHH
Confidence 9999999999876643211122226778788888888999999999988877654
|
| >3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.55 E-value=0.00039 Score=72.98 Aligned_cols=149 Identities=21% Similarity=0.159 Sum_probs=122.6
Q ss_pred HHHhhcCCCHHHHHHHHHHHHH-hccCcccccccccccchhchHHhhc--CchHHHHHHHHHHHHhcCcchHHHHHhhcC
Q 036199 512 ILNMLDSPNGKFQELAIKILHN-LSSDVDIQSHIAPSEFLPKLVPFLK--DATLAVSCLVILKNMCNTEHARVCVVETSG 588 (710)
Q Consensus 512 LV~LL~~~~~~~~~~A~~aL~n-Ls~~~en~~~iv~aG~V~~Lv~lL~--~~~~~~~al~iL~nLa~~~e~r~~i~~~~g 588 (710)
+++-|.+++.+.++.++--|.. ++.+.+-...+++.||+..|+.++. +++.+.+++.+|.+|-.+..|-..++.+..
T Consensus 123 iiekL~~~~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~~~gN~q~Y~L~AL~~LM~~v~Gm~gvvs~~~ 202 (339)
T 3dad_A 123 ILEKLYSSSGPELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAAADHNYQSYILRALGQLMLFVDGMLGVVAHSD 202 (339)
T ss_dssp HHHHHHHCCHHHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTTSCHHHHHHHHHHHHHHTTSHHHHHHHHHCHH
T ss_pred HHHHHhcCCcHHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHhcChHHHHHHHHHHHHHHhccccccchhCCHH
Confidence 3455556777778888888887 6667888899999999999999995 467899999999999999999999988788
Q ss_pred ChHHHHHHhhcCCHHHHHHHHHHHHHHhcCChHHHHHHHhC--------C--chHHHHHHhh---cCCHHHHHHHHHHHH
Q 036199 589 CLPSVAELLEIGSEEDQEHAVAILLCLCSQRDQYCKLVMNE--------G--VIPSLVKISV---YGNDKAKVSALELRR 655 (710)
Q Consensus 589 ~I~~Lv~lL~~~s~~~ke~A~~aL~~Lc~~~~~~~~~v~~~--------G--~v~~Lv~L~~---~gt~~~k~kA~~LL~ 655 (710)
.|..|+.++.+....+...|+.+|..+|..++.+...+.++ | ....|+.++. +++...+-+|..|+.
T Consensus 203 fI~~lyslv~s~~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~elq~~amtLIN 282 (339)
T 3dad_A 203 TIQWLYTLCASLSRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADPELLVYTVTLIN 282 (339)
T ss_dssp HHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCccHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHHHHHHHHHHHH
Confidence 99999999998899999999999999998886555544432 2 2678888887 788999999999998
Q ss_pred -Hhhhc
Q 036199 656 -LLRDV 660 (710)
Q Consensus 656 -~l~~~ 660 (710)
+|...
T Consensus 283 ~lL~~a 288 (339)
T 3dad_A 283 KTLAAL 288 (339)
T ss_dssp HHHHHC
T ss_pred HHHhcC
Confidence 44443
|
| >2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A | Back alignment and structure |
|---|
Probab=97.53 E-value=0.00019 Score=85.11 Aligned_cols=263 Identities=10% Similarity=0.076 Sum_probs=163.0
Q ss_pred hhhcCCCHHHHHHHHHHHHHHHccCc-cc-chhcccCCcHHHHHHHhhccccCCCHHHHHHHHHHHHHHhccCCCCC--c
Q 036199 388 SRLTELNWDCQCKVIEDYETRLEHDN-QV-SHSLSSTNFVEPLIRFLRDARDLHDSRAQRIGCRLLLAFVSKNRSGI--P 463 (710)
Q Consensus 388 ~~L~s~~~e~q~~Al~~L~~Lak~~~-~~-r~~I~~~G~I~~LV~lL~s~~~~~d~~~q~~A~~~L~nL~~~~~~k~--~ 463 (710)
..+.+.+|..+..|+..+..++.... +. ...+ ...++.|+..+.+ .++.++..++.+|..++..-.... .
T Consensus 376 ~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l--~~il~~l~~~l~d----~~~~vr~~a~~~l~~l~~~~~~~~~~~ 449 (861)
T 2bpt_A 376 QNITADNWRNREAAVMAFGSIMDGPDKVQRTYYV--HQALPSILNLMND----QSLQVKETTAWCIGRIADSVAESIDPQ 449 (861)
T ss_dssp HHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHH--HHHHHHHHHGGGC----SCHHHHHHHHHHHHHHHHHHGGGSCTT
T ss_pred HHcCCCChhHHHHHHHHHHHHHcCCCHHHHHHHH--HHHHHHHHHHcCC----CcHHHHHHHHHHHHHHHHHhhhhcCCH
Confidence 44567789999999999988885432 11 1111 2356666666655 678899999999888854211000 1
Q ss_pred cccccchHHHHHHhccCcH-HHHHHHHHHHhccCch--hhHHHhh--hCcHHHHHHhhcCCC--HHHHHHHHHHHHHhcc
Q 036199 464 YLNEDLFSLLASFLHSAAA-TEETLAILVALSSYAY--FISKIVA--SGALASILNMLDSPN--GKFQELAIKILHNLSS 536 (710)
Q Consensus 464 i~~~gaI~~LV~lL~s~~~-~~~Aa~~L~~Ls~~~~--nk~~I~~--~GaI~~LV~LL~~~~--~~~~~~A~~aL~nLs~ 536 (710)
-.-...++.|+..|++... +..|+++|.+++..-. ....+.. ...++.|+.++.+.+ +.++..++.+|..+..
T Consensus 450 ~~~~~~l~~l~~~l~~~~~v~~~a~~al~~l~~~~~~~~~~~l~~~~~~il~~L~~~l~~~d~~~~vr~~a~~al~~l~~ 529 (861)
T 2bpt_A 450 QHLPGVVQACLIGLQDHPKVATNCSWTIINLVEQLAEATPSPIYNFYPALVDGLIGAANRIDNEFNARASAFSALTTMVE 529 (861)
T ss_dssp TTHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHSSSSSCGGGGGHHHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHhCcCcchHHHHHHHHHHHHHHH
Confidence 1235678888888876521 3578888887764211 0111111 356788888887543 6788899999999886
Q ss_pred CcccccccccccchhchHHhhcC-----------------chHHHHHHHHHHHHhcC-cchHHHHHhhcCChHHHHHHhh
Q 036199 537 DVDIQSHIAPSEFLPKLVPFLKD-----------------ATLAVSCLVILKNMCNT-EHARVCVVETSGCLPSVAELLE 598 (710)
Q Consensus 537 ~~en~~~iv~aG~V~~Lv~lL~~-----------------~~~~~~al~iL~nLa~~-~e~r~~i~~~~g~I~~Lv~lL~ 598 (710)
.......-.-...+|.++..|.+ ..++..++.+|.+++.. +..-.... ...++.++.++.
T Consensus 530 ~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~--~~l~~~l~~~l~ 607 (861)
T 2bpt_A 530 YATDTVAETSASISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPSSVEPVA--DMLMGLFFRLLE 607 (861)
T ss_dssp HCCGGGHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHCGGGTGGGH--HHHHHHHHHHHH
T ss_pred HcchhhHHHHHHHHHHHHHHHHHHHhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHH--HHHHHHHHHHHc
Confidence 43322111112456666666531 13456788888888762 22111111 235677788888
Q ss_pred cCCH-HHHHHHHHHHHHHhcCChH-HHHHHHhCCchHHHHHHhhcCCHHHHHHHHHHHHHhhhc
Q 036199 599 IGSE-EDQEHAVAILLCLCSQRDQ-YCKLVMNEGVIPSLVKISVYGNDKAKVSALELRRLLRDV 660 (710)
Q Consensus 599 ~~s~-~~ke~A~~aL~~Lc~~~~~-~~~~v~~~G~v~~Lv~L~~~gt~~~k~kA~~LL~~l~~~ 660 (710)
..+. ..++.++.++..++..... ....+ ..++|.|+..+.+.+...+..|..++..+.+.
T Consensus 608 ~~~~~~v~~~~~~~l~~l~~~~~~~~~~~l--~~i~~~l~~~l~~~~~~vr~~a~~~l~~l~~~ 669 (861)
T 2bpt_A 608 KKDSAFIEDDVFYAISALAASLGKGFEKYL--ETFSPYLLKALNQVDSPVSITAVGFIADISNS 669 (861)
T ss_dssp STTGGGTHHHHHHHHHHHHHHHGGGGHHHH--HHHHHHHHHHHHCTTSHHHHHHHHHHHHHHHH
T ss_pred cCCCCcHHHHHHHHHHHHHHHHhhhHHHHH--HHHHHHHHHHhccccHHHHHHHHHHHHHHHHH
Confidence 7766 7899999888887754322 12111 12678888888777888898898888866543
|
| >1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1 | Back alignment and structure |
|---|
Probab=97.48 E-value=0.002 Score=74.31 Aligned_cols=206 Identities=13% Similarity=0.170 Sum_probs=139.9
Q ss_pred hhhcCCCHHHHHHHHHHHHHHHccCcccchhcccCCcHHHHHHHhhccccCCCHHHHHHHHHHHHHHhccCCCCCccccc
Q 036199 388 SRLTELNWDCQCKVIEDYETRLEHDNQVSHSLSSTNFVEPLIRFLRDARDLHDSRAQRIGCRLLLAFVSKNRSGIPYLNE 467 (710)
Q Consensus 388 ~~L~s~~~e~q~~Al~~L~~Lak~~~~~r~~I~~~G~I~~LV~lL~s~~~~~d~~~q~~A~~~L~nL~~~~~~k~~i~~~ 467 (710)
..|.+.+...+++++..|..+.-.+.+. ..+....++++.+ .+...++.+-..+..++..+.. +--
T Consensus 41 ~~l~~~~~~~k~~~l~kli~~~~~G~d~------~~~~~~vik~~~s----~~~~~Krl~Yl~~~~~~~~~~e----~~~ 106 (618)
T 1w63_A 41 SSFREEDNTYRCRNVAKLLYMHMLGYPA------HFGQLECLKLIAS----QKFTDKRIGYLGAMLLLDERQD----VHL 106 (618)
T ss_dssp HHHTTTCTTTHHHHHHHHHHHHHTTCCC------GGGHHHHHHHHHS----SSHHHHHHHHHHHHHHCCCCHH----HHH
T ss_pred HHhhCCCHHHHHHHHHHHHHHHHcCCCC------cchHHHHHHHHcC----CchHHHHHHHHHHHHHhCCCcH----HHH
Confidence 3455555556677776665544333221 2245556677776 6888888888888777554311 011
Q ss_pred cchHHHHHHhccCcH--HHHHHHHHHHhccCchhhHHHhhhCcHHHHHHhhcCCCHHHHHHHHHHHHHhcc-Cccccccc
Q 036199 468 DLFSLLASFLHSAAA--TEETLAILVALSSYAYFISKIVASGALASILNMLDSPNGKFQELAIKILHNLSS-DVDIQSHI 544 (710)
Q Consensus 468 gaI~~LV~lL~s~~~--~~~Aa~~L~~Ls~~~~nk~~I~~~GaI~~LV~LL~~~~~~~~~~A~~aL~nLs~-~~en~~~i 544 (710)
-++..|.+-|.+++. +..|+.+|.++.. ++ + ....++.+..+|.+.++.+++.|+.+|.++.. +++.
T Consensus 107 l~in~l~kDL~~~n~~vr~lAL~~L~~i~~-~~----~-~~~l~~~l~~~L~~~~~~VRk~A~~al~~l~~~~p~~---- 176 (618)
T 1w63_A 107 LMTNCIKNDLNHSTQFVQGLALCTLGCMGS-SE----M-CRDLAGEVEKLLKTSNSYLRKKAALCAVHVIRKVPEL---- 176 (618)
T ss_dssp HHHHHHHHHHSCSSSHHHHHHHHHHHHHCC-HH----H-HHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHCGGG----
T ss_pred HHHHHHHHhcCCCCHhHHHHHHHHHHhcCC-HH----H-HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHChHH----
Confidence 356667777777665 3578888888873 21 2 13568899999999999999999999999986 3432
Q ss_pred ccccchhchHHhhcCc--hHHHHHHHHHHHHhcCcchHHHHHhhcCChHHHHHHhhc---------------CCHHHHHH
Q 036199 545 APSEFLPKLVPFLKDA--TLAVSCLVILKNMCNTEHARVCVVETSGCLPSVAELLEI---------------GSEEDQEH 607 (710)
Q Consensus 545 v~aG~V~~Lv~lL~~~--~~~~~al~iL~nLa~~~e~r~~i~~~~g~I~~Lv~lL~~---------------~s~~~ke~ 607 (710)
++ +.++.|..+|.|. .++..|+.+|..++.......... ...++.|+.+|.. .++..+-.
T Consensus 177 v~-~~~~~l~~lL~D~d~~V~~~Al~~L~~i~~~~~~~~~~~--~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~ 253 (618)
T 1w63_A 177 ME-MFLPATKNLLNEKNHGVLHTSVVLLTEMCERSPDMLAHF--RKLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVR 253 (618)
T ss_dssp GG-GGGGGTTTSTTCCCHHHHHHHHHHHHHHCCSHHHHHHHH--HTTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHH
T ss_pred HH-HHHHHHHHHhCCCCHhHHHHHHHHHHHHHHhChHHHHHH--HHHHHHHHHHHHHHHcCCCCccccccCCCCChHHHH
Confidence 22 7888888899664 678889999999987543221122 2578888887763 48899988
Q ss_pred HHHHHHHHhcCCh
Q 036199 608 AVAILLCLCSQRD 620 (710)
Q Consensus 608 A~~aL~~Lc~~~~ 620 (710)
.+.+|..++..++
T Consensus 254 il~~L~~l~~~~~ 266 (618)
T 1w63_A 254 ILRLLRILGRNDD 266 (618)
T ss_dssp HHHHHHHHTTTCH
T ss_pred HHHHHHHhCCCCH
Confidence 9999888887654
|
| >2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=97.46 E-value=0.00092 Score=67.16 Aligned_cols=177 Identities=12% Similarity=0.119 Sum_probs=122.9
Q ss_pred hhhcCCCHHHHHHHHHHHHHHHccCcccchhcccCCcHHHHHHHhh-ccccCCCHHHHHHHHHHHHHHhccCCCCCcccc
Q 036199 388 SRLTELNWDCQCKVIEDYETRLEHDNQVSHSLSSTNFVEPLIRFLR-DARDLHDSRAQRIGCRLLLAFVSKNRSGIPYLN 466 (710)
Q Consensus 388 ~~L~s~~~e~q~~Al~~L~~Lak~~~~~r~~I~~~G~I~~LV~lL~-s~~~~~d~~~q~~A~~~L~nL~~~~~~k~~i~~ 466 (710)
..+.+.+|..+..|+..|..+++..+..... .-..+++.|...|. . .+..++..|+.+|..++..-.....-.-
T Consensus 22 ~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~~-~~~~i~~~L~~~l~kd----~~~~V~~~a~~~l~~la~~l~~~~~~~~ 96 (242)
T 2qk2_A 22 DKLEEKKWTLRKESLEVLEKLLTDHPKLENG-EYGALVSALKKVITKD----SNVVLVAMAGKCLALLAKGLAKRFSNYA 96 (242)
T ss_dssp HHHTCSSHHHHHHHHHHHHHHHHHCSSBCCC-CCHHHHHHHHHHHHHC----SCHHHHHHHHHHHHHHHHHHGGGGHHHH
T ss_pred hhhccCCHHHHHHHHHHHHHHHccCCCCCCC-CHHHHHHHHHHHhccC----CCHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 6777889999999999999998874321110 01245666666773 4 7899999999999998643211111123
Q ss_pred ccchHHHHHHhccCcH--HHHHHHHHHHhccCchhhHHHhhhCcHHHHHHhhcCCCHHHHHHHHHHHHHhccCcccccc-
Q 036199 467 EDLFSLLASFLHSAAA--TEETLAILVALSSYAYFISKIVASGALASILNMLDSPNGKFQELAIKILHNLSSDVDIQSH- 543 (710)
Q Consensus 467 ~gaI~~LV~lL~s~~~--~~~Aa~~L~~Ls~~~~nk~~I~~~GaI~~LV~LL~~~~~~~~~~A~~aL~nLs~~~en~~~- 543 (710)
...+|.|+..+++... ++.|..+|..+...... ...+|.|...|.+.++.++..++..|..+.........
T Consensus 97 ~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~~------~~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~~~~~~ 170 (242)
T 2qk2_A 97 SACVPSLLEKFKEKKPNVVTALREAIDAIYASTSL------EAQQESIVESLSNKNPSVKSETALFIARALTRTQPTALN 170 (242)
T ss_dssp HHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSCH------HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCCGGGCC
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCCH------HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCCCcc
Confidence 4578899999887765 36788888877653321 23578899999999999999999999996543221111
Q ss_pred -cccccchhchHHhhcC--chHHHHHHHHHHHHhc
Q 036199 544 -IAPSEFLPKLVPFLKD--ATLAVSCLVILKNMCN 575 (710)
Q Consensus 544 -iv~aG~V~~Lv~lL~~--~~~~~~al~iL~nLa~ 575 (710)
-.-...+|.|+.+|.| +.++..|..+|..++.
T Consensus 171 ~~~l~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~ 205 (242)
T 2qk2_A 171 KKLLKLLTTSLVKTLNEPDPTVRDSSAEALGTLIK 205 (242)
T ss_dssp HHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHH
Confidence 1113678888888965 4678888888888875
|
| >2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=97.43 E-value=0.0012 Score=66.21 Aligned_cols=177 Identities=10% Similarity=0.072 Sum_probs=125.1
Q ss_pred HHHHHhhccccCCCHHHHHHHHHHHHHHhcc-CCCCCccccccchHHHHHHhc-cCcHH--HHHHHHHHHhccCchhhHH
Q 036199 427 PLIRFLRDARDLHDSRAQRIGCRLLLAFVSK-NRSGIPYLNEDLFSLLASFLH-SAAAT--EETLAILVALSSYAYFISK 502 (710)
Q Consensus 427 ~LV~lL~s~~~~~d~~~q~~A~~~L~nL~~~-~~~k~~i~~~gaI~~LV~lL~-s~~~~--~~Aa~~L~~Ls~~~~nk~~ 502 (710)
.+.+.+.+ .+...+..|+..|..+... ...... .-...++.|...|. +.+.. ..|+.+|..|+..-. ..
T Consensus 19 ~l~~~l~s----~~w~~R~~a~~~L~~l~~~~~~~~~~-~~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~--~~ 91 (242)
T 2qk2_A 19 DFYDKLEE----KKWTLRKESLEVLEKLLTDHPKLENG-EYGALVSALKKVITKDSNVVLVAMAGKCLALLAKGLA--KR 91 (242)
T ss_dssp THHHHHTC----SSHHHHHHHHHHHHHHHHHCSSBCCC-CCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHG--GG
T ss_pred HHHhhhcc----CCHHHHHHHHHHHHHHHccCCCCCCC-CHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHh--hh
Confidence 46666765 7889999999999998654 221111 12356788888884 66653 578888888773211 11
Q ss_pred Hh--hhCcHHHHHHhhcCCCHHHHHHHHHHHHHhccCcccccccccccchhchHHhhcC--chHHHHHHHHHHHHhc-C-
Q 036199 503 IV--ASGALASILNMLDSPNGKFQELAIKILHNLSSDVDIQSHIAPSEFLPKLVPFLKD--ATLAVSCLVILKNMCN-T- 576 (710)
Q Consensus 503 I~--~~GaI~~LV~LL~~~~~~~~~~A~~aL~nLs~~~en~~~iv~aG~V~~Lv~lL~~--~~~~~~al~iL~nLa~-~- 576 (710)
+. -...+|+|++.+.+.++.++..|..+|.++...... ...++.|...|.+ +.+...++..|..+.. .
T Consensus 92 ~~~~~~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~~------~~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~ 165 (242)
T 2qk2_A 92 FSNYASACVPSLLEKFKEKKPNVVTALREAIDAIYASTSL------EAQQESIVESLSNKNPSVKSETALFIARALTRTQ 165 (242)
T ss_dssp GHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSCH------HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCCH------HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcC
Confidence 21 134799999999999999999999999999864321 2356777777754 5678999999999654 3
Q ss_pred cc--hHHHHHhhcCChHHHHHHhhcCCHHHHHHHHHHHHHHhcCC
Q 036199 577 EH--ARVCVVETSGCLPSVAELLEIGSEEDQEHAVAILLCLCSQR 619 (710)
Q Consensus 577 ~e--~r~~i~~~~g~I~~Lv~lL~~~s~~~ke~A~~aL~~Lc~~~ 619 (710)
++ ....+- ..+|.|+..|...++++|..|..+|..++..-
T Consensus 166 ~~~~~~~~l~---~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~~v 207 (242)
T 2qk2_A 166 PTALNKKLLK---LLTTSLVKTLNEPDPTVRDSSAEALGTLIKLM 207 (242)
T ss_dssp GGGCCHHHHH---HHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHH
T ss_pred CCCccHHHHH---HHHHHHHHHhcCCChHHHHHHHHHHHHHHHHc
Confidence 22 233332 36899999999999999999999998887543
|
| >1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A | Back alignment and structure |
|---|
Probab=97.42 E-value=0.00033 Score=83.28 Aligned_cols=266 Identities=12% Similarity=0.072 Sum_probs=160.3
Q ss_pred hhhcCCCHHHHHHHHHHHHHHHccCc-ccchhcccCCcHHHHHHHhhccccCCCHHHHHHHHHHHHHHhccCCCCC--cc
Q 036199 388 SRLTELNWDCQCKVIEDYETRLEHDN-QVSHSLSSTNFVEPLIRFLRDARDLHDSRAQRIGCRLLLAFVSKNRSGI--PY 464 (710)
Q Consensus 388 ~~L~s~~~e~q~~Al~~L~~Lak~~~-~~r~~I~~~G~I~~LV~lL~s~~~~~d~~~q~~A~~~L~nL~~~~~~k~--~i 464 (710)
..+.+.+|..+..|+..+..++.... +.... .-...++.++..|.+ .+..++..|+.+|.+++....... .-
T Consensus 373 ~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~-~~~~~l~~l~~~l~d----~~~~vr~~a~~~l~~~~~~~~~~~~~~~ 447 (876)
T 1qgr_A 373 EHIKNPDWRYRDAAVMAFGCILEGPEPSQLKP-LVIQAMPTLIELMKD----PSVVVRDTAAWTVGRICELLPEAAINDV 447 (876)
T ss_dssp HHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHH-HHHHHHHHHHHHHTC----SSHHHHHHHHHHHHHHHHHCGGGTSSTT
T ss_pred HHccCCChHHHHHHHHHHHHHHcCCCHHHHHH-HHHHHHHHHHHHhCC----CCHHHHHHHHHHHHHHHHhCchhcccHH
Confidence 45567789999999999988886543 21111 113467888888865 678999999999999965422110 11
Q ss_pred ccccchHHHHHHhccCcH-HHHHHHHHHHhccCch------------hhHHHh--hhCcHHHHHHhhcCC---CHHHHHH
Q 036199 465 LNEDLFSLLASFLHSAAA-TEETLAILVALSSYAY------------FISKIV--ASGALASILNMLDSP---NGKFQEL 526 (710)
Q Consensus 465 ~~~gaI~~LV~lL~s~~~-~~~Aa~~L~~Ls~~~~------------nk~~I~--~~GaI~~LV~LL~~~---~~~~~~~ 526 (710)
.-...++.|+..|.+... +..|+++|.+++..-. ....+. -...+|.|+.++... +...+..
T Consensus 448 ~l~~~l~~l~~~l~~~~~v~~~a~~al~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~il~~L~~~l~~~~~~~~~~r~~ 527 (876)
T 1qgr_A 448 YLAPLLQCLIEGLSAEPRVASNVCWAFSSLAEAAYEAADVADDQEEPATYCLSSSFELIVQKLLETTDRPDGHQNNLRSS 527 (876)
T ss_dssp THHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHTTSCTTSCCCCCCCSSTTTHHHHHHHHHHHTTSCSSCSTTHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhhccccccccccccchhhhHhHHHHHHHHHHHHhCcCcchhhHHHH
Confidence 235678888888877522 3688888888774311 001111 135688888888654 3456677
Q ss_pred HHHHHHHhccCcccccccccccchhchHHhhcC-----------------chHHHHHHHHHHHHhcCcchHHHHHh-hcC
Q 036199 527 AIKILHNLSSDVDIQSHIAPSEFLPKLVPFLKD-----------------ATLAVSCLVILKNMCNTEHARVCVVE-TSG 588 (710)
Q Consensus 527 A~~aL~nLs~~~en~~~iv~aG~V~~Lv~lL~~-----------------~~~~~~al~iL~nLa~~~e~r~~i~~-~~g 588 (710)
+..+|..+...-.....-.-...++.++..+.. +++...++.+|..++..-.. ..+.. ...
T Consensus 528 ~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~l~~~~~~-~~~~~~~~~ 606 (876)
T 1qgr_A 528 AYESLMEIVKNSAKDCYPAVQKTTLVIMERLQQVLQMESHIQSTSDRIQFNDLQSLLCATLQNVLRKVQH-QDALQISDV 606 (876)
T ss_dssp HHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHHHHHTTTTSCCSTTHHHHHHHHHHHHHHHHHHHHTTSCH-HHHHTTHHH
T ss_pred HHHHHHHHHHHCchhhHHHHHHHHHHHHHHHHHHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHHhCh-hhhhHHHHH
Confidence 788887776533221111113445555554421 22456678888888774321 11111 024
Q ss_pred ChHHHHHHhhcCC--HHHHHHHHHHHHHHhcCChHHHHHHHhCCchHHHHHHhhcC-CHHHHHHHHHHHHHhhhc
Q 036199 589 CLPSVAELLEIGS--EEDQEHAVAILLCLCSQRDQYCKLVMNEGVIPSLVKISVYG-NDKAKVSALELRRLLRDV 660 (710)
Q Consensus 589 ~I~~Lv~lL~~~s--~~~ke~A~~aL~~Lc~~~~~~~~~v~~~G~v~~Lv~L~~~g-t~~~k~kA~~LL~~l~~~ 660 (710)
.++.|+.++...+ ...++.|+.++..++..........+. .+++.|+..+.+. ++.++..|..++..+...
T Consensus 607 l~~~l~~~l~~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~-~~~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~ 680 (876)
T 1qgr_A 607 VMASLLRMFQSTAGSGGVQEDALMAVSTLVEVLGGEFLKYME-AFKPFLGIGLKNYAEYQVCLAAVGLVGDLCRA 680 (876)
T ss_dssp HHHHHHHHC-----CCHHHHHHHHHHHHHHHHHGGGGGGGHH-HHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHHhhHHHHHH-HHHHHHHHHHcCcchHHHHHHHHHHHHHHHHH
Confidence 5677777777653 367899999998887643211111111 2568888888776 788898898888766543
|
| >1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A | Back alignment and structure |
|---|
Probab=97.42 E-value=0.0016 Score=77.22 Aligned_cols=266 Identities=12% Similarity=0.086 Sum_probs=168.0
Q ss_pred hhhcCC--CHHHHHHHHHHHHHHHccC-cccchhcccCCcHHHHHHHhhccccCCCHHHHHHHHHHHHHHhccCC-C-CC
Q 036199 388 SRLTEL--NWDCQCKVIEDYETRLEHD-NQVSHSLSSTNFVEPLIRFLRDARDLHDSRAQRIGCRLLLAFVSKNR-S-GI 462 (710)
Q Consensus 388 ~~L~s~--~~e~q~~Al~~L~~Lak~~-~~~r~~I~~~G~I~~LV~lL~s~~~~~d~~~q~~A~~~L~nL~~~~~-~-k~ 462 (710)
..+.+. ++..+..++..+..+++.- ++.- .-.....++.++..|.+. ..+..++..|+.+|.++...-. + ..
T Consensus 135 ~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~-~~~~~~ll~~l~~~l~~~--~~~~~vr~~a~~~l~~~~~~~~~~~~~ 211 (876)
T 1qgr_A 135 ANVTNPNSTEHMKESTLEAIGYICQDIDPEQL-QDKSNEILTAIIQGMRKE--EPSNNVKLAATNALLNSLEFTKANFDK 211 (876)
T ss_dssp HHHHCTTCCHHHHHHHHHHHHHHHHHSCHHHH-GGGHHHHHHHHHHHHSTT--CSCHHHHHHHHHHHHHHGGGCHHHHTS
T ss_pred HHHhCCCCCHHHHHHHHHHHHHHHHhcCHhhH-HhHHHHHHHHHHHhhcCC--CCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445566 7788888999998888652 1110 001134556666666541 1267889999999998753210 0 00
Q ss_pred ccccccchHHHHHHhccCcHH--HHHHHHHHHhccC-chhhHHHhhhCcHHHHHHhhcCCCHHHHHHHHHHHHHhccCcc
Q 036199 463 PYLNEDLFSLLASFLHSAAAT--EETLAILVALSSY-AYFISKIVASGALASILNMLDSPNGKFQELAIKILHNLSSDVD 539 (710)
Q Consensus 463 ~i~~~gaI~~LV~lL~s~~~~--~~Aa~~L~~Ls~~-~~nk~~I~~~GaI~~LV~LL~~~~~~~~~~A~~aL~nLs~~~e 539 (710)
.......++.+...+.+.+.. ..++.+|..+... ...-........++.++..+.+.++.++..|+..+.+++....
T Consensus 212 ~~~~~~il~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~al~~l~~l~~~~~ 291 (876)
T 1qgr_A 212 ESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEM 291 (876)
T ss_dssp HHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSGGGCHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHH
Confidence 000123566777777665542 4677777776632 2211111223678888888888889999999999888875320
Q ss_pred ------------c----c--ccccc---ccchhchHHhhcC---------chHHHHHHHHHHHHhcCcchHHHHHhhcCC
Q 036199 540 ------------I----Q--SHIAP---SEFLPKLVPFLKD---------ATLAVSCLVILKNMCNTEHARVCVVETSGC 589 (710)
Q Consensus 540 ------------n----~--~~iv~---aG~V~~Lv~lL~~---------~~~~~~al~iL~nLa~~~e~r~~i~~~~g~ 589 (710)
. + ..... ...++.++..|.. ...+..|..+|..|+..-.. .+.. ..
T Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~~~d~~~~~~~~r~~a~~~l~~l~~~~~~--~~~~--~~ 367 (876)
T 1qgr_A 292 DLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCED--DIVP--HV 367 (876)
T ss_dssp HHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHGG--GGHH--HH
T ss_pred hHhhhhccccccCCCccchhHHHHHHHHHHHhHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHCcH--hhHH--HH
Confidence 0 1 01111 3456677777731 24577778888888763221 1222 35
Q ss_pred hHHHHHHhhcCCHHHHHHHHHHHHHHhcCCh-HHHHHHHhCCchHHHHHHhhcCCHHHHHHHHHHHHHhhhcc
Q 036199 590 LPSVAELLEIGSEEDQEHAVAILLCLCSQRD-QYCKLVMNEGVIPSLVKISVYGNDKAKVSALELRRLLRDVA 661 (710)
Q Consensus 590 I~~Lv~lL~~~s~~~ke~A~~aL~~Lc~~~~-~~~~~v~~~G~v~~Lv~L~~~gt~~~k~kA~~LL~~l~~~~ 661 (710)
++.+...+...+...|+.|+.+|..++.... +..... -..++|.|+..+.+.++.+|..|.+.|..+...-
T Consensus 368 l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~-~~~~l~~l~~~l~d~~~~vr~~a~~~l~~~~~~~ 439 (876)
T 1qgr_A 368 LPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPL-VIQAMPTLIELMKDPSVVVRDTAAWTVGRICELL 439 (876)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHH-HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHccCCChHHHHHHHHHHHHHHcCCCHHHHHHH-HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhC
Confidence 6667777778899999999999999987653 322222 2457899999999999999999999999877663
|
| >1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1 | Back alignment and structure |
|---|
Probab=97.42 E-value=0.00096 Score=76.97 Aligned_cols=243 Identities=11% Similarity=0.109 Sum_probs=147.2
Q ss_pred hhhcCCCHHHHHHHHHHHHHHHccCcccchhcccCCcHHHHHHHhhccccCCCHHHHHHHHHHHHHHhccCCCCCccccc
Q 036199 388 SRLTELNWDCQCKVIEDYETRLEHDNQVSHSLSSTNFVEPLIRFLRDARDLHDSRAQRIGCRLLLAFVSKNRSGIPYLNE 467 (710)
Q Consensus 388 ~~L~s~~~e~q~~Al~~L~~Lak~~~~~r~~I~~~G~I~~LV~lL~s~~~~~d~~~q~~A~~~L~nL~~~~~~k~~i~~~ 467 (710)
..|.+.++..+..|+..|..+.. ++ +. ...++.+.++|.+ .++-+++.|+.++.++..... . .+ .
T Consensus 114 kDL~~~n~~vr~lAL~~L~~i~~--~~----~~-~~l~~~l~~~L~~----~~~~VRk~A~~al~~l~~~~p--~-~v-~ 178 (618)
T 1w63_A 114 NDLNHSTQFVQGLALCTLGCMGS--SE----MC-RDLAGEVEKLLKT----SNSYLRKKAALCAVHVIRKVP--E-LM-E 178 (618)
T ss_dssp HHHSCSSSHHHHHHHHHHHHHCC--HH----HH-HHHHHHHHHHHHS----CCHHHHHHHHHHHHHHHHHCG--G-GG-G
T ss_pred HhcCCCCHhHHHHHHHHHHhcCC--HH----HH-HHHHHHHHHHHcC----CCHHHHHHHHHHHHHHHHHCh--H-HH-H
Confidence 45667778888888888877752 11 11 3457778888876 789999999999999965332 1 12 3
Q ss_pred cchHHHHHHhccCcHH--HHHHHHHHHhccCchh-hHHHhhhCcHHHHHHhhcC---------------CCHHHHHHHHH
Q 036199 468 DLFSLLASFLHSAAAT--EETLAILVALSSYAYF-ISKIVASGALASILNMLDS---------------PNGKFQELAIK 529 (710)
Q Consensus 468 gaI~~LV~lL~s~~~~--~~Aa~~L~~Ls~~~~n-k~~I~~~GaI~~LV~LL~~---------------~~~~~~~~A~~ 529 (710)
+.++.+..+|.+.+.. ..|+.+|..++..... ...+ ...+|.|+.+|.+ .++-.+...+.
T Consensus 179 ~~~~~l~~lL~D~d~~V~~~Al~~L~~i~~~~~~~~~~~--~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~ 256 (618)
T 1w63_A 179 MFLPATKNLLNEKNHGVLHTSVVLLTEMCERSPDMLAHF--RKLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILR 256 (618)
T ss_dssp GGGGGTTTSTTCCCHHHHHHHHHHHHHHCCSHHHHHHHH--HTTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCHhHHHHHHHHHHHHHHhChHHHHHH--HHHHHHHHHHHHHHHcCCCCccccccCCCCChHHHHHHH
Confidence 7888888999877653 5788888888865321 1111 3567878877642 36777777777
Q ss_pred HHHHhccCccc-ccccc-------------------------------------cccchhchHHhhc--CchHHHHHHHH
Q 036199 530 ILHNLSSDVDI-QSHIA-------------------------------------PSEFLPKLVPFLK--DATLAVSCLVI 569 (710)
Q Consensus 530 aL~nLs~~~en-~~~iv-------------------------------------~aG~V~~Lv~lL~--~~~~~~~al~i 569 (710)
+|..++..+.. ...+. ...++..|..+|. +++++..|+..
T Consensus 257 ~L~~l~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~aV~~ea~~~i~~l~~~~~l~~~a~~~L~~~L~~~d~~vr~~aL~~ 336 (618)
T 1w63_A 257 LLRILGRNDDDSSEAMNDILAQVATNTETSKNVGNAILYETVLTIMDIKSESGLRVLAINILGRFLLNNDKNIRYVALTS 336 (618)
T ss_dssp HHHHHTTTCHHHHHTTHHHHHHHHHTSCCSSTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCSSTTTHHHHHHH
T ss_pred HHHHhCCCCHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhCCCCchHHHHHHH
Confidence 77777653211 11000 0023444455553 23445555555
Q ss_pred HHHHhcCcchHHHHHhhcCChHHHHHHhhcCCHHHHHHHHHHHHHHhcCChHHHHHHHhCCchHHHHHHhhcCCHHHHHH
Q 036199 570 LKNMCNTEHARVCVVETSGCLPSVAELLEIGSEEDQEHAVAILLCLCSQRDQYCKLVMNEGVIPSLVKISVYGNDKAKVS 649 (710)
Q Consensus 570 L~nLa~~~e~r~~i~~~~g~I~~Lv~lL~~~s~~~ke~A~~aL~~Lc~~~~~~~~~v~~~G~v~~Lv~L~~~gt~~~k~k 649 (710)
|..++... ..++. .....++..+...+..+|..|+.+|..++.... ... ++..|+..+.+.+...|+.
T Consensus 337 L~~i~~~~---p~~~~--~~~~~i~~~l~d~d~~Ir~~alelL~~l~~~~n--v~~-----iv~eL~~~l~~~d~e~r~~ 404 (618)
T 1w63_A 337 LLKTVQTD---HNAVQ--RHRSTIVDCLKDLDVSIKRRAMELSFALVNGNN--IRG-----MMKELLYFLDSCEPEFKAD 404 (618)
T ss_dssp HHHHHHHH---HHHHG--GGHHHHHHGGGSSCHHHHHHHHHHHHHHCCSSS--THH-----HHHHHHHHHHHCCHHHHHH
T ss_pred HHHHHhhC---HHHHH--HHHHHHHHHccCCChhHHHHHHHHHHHHccccc--HHH-----HHHHHHHHHHhCCHHHHHH
Confidence 55554321 11222 234566666666677777777777777776542 111 2356666666667777777
Q ss_pred HHHHHHHhhh
Q 036199 650 ALELRRLLRD 659 (710)
Q Consensus 650 A~~LL~~l~~ 659 (710)
+...|..+..
T Consensus 405 ~v~~I~~la~ 414 (618)
T 1w63_A 405 CASGIFLAAE 414 (618)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 7766666654
|
| >1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A | Back alignment and structure |
|---|
Probab=97.40 E-value=0.00037 Score=86.73 Aligned_cols=263 Identities=15% Similarity=0.129 Sum_probs=167.8
Q ss_pred cchhhcCCCHHHHHHHHHHHHHHHccCcccchhcccCCcHHHHHHHhhccccCCCHHHHHHHHHHHHHHhccCCCCCccc
Q 036199 386 DLSRLTELNWDCQCKVIEDYETRLEHDNQVSHSLSSTNFVEPLIRFLRDARDLHDSRAQRIGCRLLLAFVSKNRSGIPYL 465 (710)
Q Consensus 386 ~L~~L~s~~~e~q~~Al~~L~~Lak~~~~~r~~I~~~G~I~~LV~lL~s~~~~~d~~~q~~A~~~L~nL~~~~~~k~~i~ 465 (710)
.|.++.+.+.+.+..|...|....+.+...-..-.....++.|++.|.+ .+..++..|+.+|..++..-.. . .
T Consensus 11 lL~~l~s~d~~~R~~A~~~L~~~l~~~~~~~~~~~~~~il~~Ll~~L~d----~~~~vR~~A~~~L~~l~~~~~~--~-~ 83 (1230)
T 1u6g_C 11 LLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLED----KNGEVQNLAVKCLGPLVSKVKE--Y-Q 83 (1230)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTTC----SSHHHHHHHHHHHHHHHTTSCH--H-H
T ss_pred HHHhcCCCCHhHHHHHHHHHHHHHcccccCCChhHHHHHHHHHHHHhcC----CCHHHHHHHHHHHHHHHHhCCH--H-H
Confidence 3477888899999999999988765532111001122467778888865 7899999999999998653211 0 1
Q ss_pred cccchHHHHHHhccCcH--HHHHHHHHHHhccCchhh------HHHhhhCcHHHHHHhhc-CCCHHHHHHHHHHHHHhcc
Q 036199 466 NEDLFSLLASFLHSAAA--TEETLAILVALSSYAYFI------SKIVASGALASILNMLD-SPNGKFQELAIKILHNLSS 536 (710)
Q Consensus 466 ~~gaI~~LV~lL~s~~~--~~~Aa~~L~~Ls~~~~nk------~~I~~~GaI~~LV~LL~-~~~~~~~~~A~~aL~nLs~ 536 (710)
-...++.|+..|.++.. +..|+.+|..++..-... ..-.-...+|.|+..+. +++...+..|+.+|..++.
T Consensus 84 ~~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~~~~~~~~~~al~~l~~~~~ 163 (1230)
T 1u6g_C 84 VETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLS 163 (1230)
T ss_dssp HHHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHH
Confidence 23466777777766554 345666666555211110 01112457899999998 5889999999999999984
Q ss_pred CcccccccccccchhchHHhhcC--chHHHHHHHHHHHHhcCcchHHHHHhhcCChHHHHHHhhcC-CHHHHHHHHHHHH
Q 036199 537 DVDIQSHIAPSEFLPKLVPFLKD--ATLAVSCLVILKNMCNTEHARVCVVETSGCLPSVAELLEIG-SEEDQEHAVAILL 613 (710)
Q Consensus 537 ~~en~~~iv~aG~V~~Lv~lL~~--~~~~~~al~iL~nLa~~~e~r~~i~~~~g~I~~Lv~lL~~~-s~~~ke~A~~aL~ 613 (710)
.-...-.-.-...++.|+..|.+ +.++..|+.+|..++..... .+. ...++.|+..|... ++..+..|+.+|.
T Consensus 164 ~~~~~l~~~~~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~~~--~~~--~~~l~~l~~~L~~~~~~~~r~~a~~~l~ 239 (1230)
T 1u6g_C 164 RQGGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGN--IVF--VDLIEHLLSELSKNDSMSTTRTYIQCIA 239 (1230)
T ss_dssp HTCSSCTTTHHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC------C--TTHHHHHHHHHHHTCSSCSCTTHHHHHH
T ss_pred HhHhHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhcCH--HHH--HHHHHHHHHHhccCCchhHHHHHHHHHH
Confidence 21111000124466667777755 46789999999999875332 222 34678888888654 2345667788887
Q ss_pred HHhcCChHHHHHHHhCCchHHHHHHhhcCCHHHHHHHHHHHHHhhhc
Q 036199 614 CLCSQRDQYCKLVMNEGVIPSLVKISVYGNDKAKVSALELRRLLRDV 660 (710)
Q Consensus 614 ~Lc~~~~~~~~~v~~~G~v~~Lv~L~~~gt~~~k~kA~~LL~~l~~~ 660 (710)
.++...+..-.. .-..+++.++..+.+.++..|+.|...+..+.+.
T Consensus 240 ~l~~~~~~~~~~-~l~~l~~~ll~~l~d~~~~vR~~a~~~l~~l~~~ 285 (1230)
T 1u6g_C 240 AISRQAGHRIGE-YLEKIIPLVVKFCNVDDDELREYCIQAFESFVRR 285 (1230)
T ss_dssp HHHHHSSGGGTT-SCTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHC
T ss_pred HHHHHhHHHHHH-HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 777644221000 1245788888888888888888888877755543
|
| >4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.32 E-value=3.2e-05 Score=69.36 Aligned_cols=45 Identities=16% Similarity=0.373 Sum_probs=0.0
Q ss_pred ccccCCccccCCce-----------------e-cCCCCccchhhHHHHhhhCCCCCCCCCCccC
Q 036199 269 FKCPLSLRLMYDPV-----------------V-IESGQTFERMWIQKWFEEGNHTCPKTKMKLV 314 (710)
Q Consensus 269 f~CPI~~~~m~DPV-----------------~-~~~G~ty~r~~I~~w~~~g~~~cP~t~~~l~ 314 (710)
-.|+||++-|.+|. + ++|||.|.+.||.+|+.. +.+||.|++++.
T Consensus 49 d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~-~~~CP~Cr~~~~ 111 (117)
T 4a0k_B 49 DNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT-RQVCPLDNREWE 111 (117)
T ss_dssp ----------------------------------------------------------------
T ss_pred CcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHc-CCcCCCCCCeee
Confidence 47999999998853 2 489999999999999986 779999988753
|
| >2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A | Back alignment and structure |
|---|
Probab=97.27 E-value=0.0012 Score=78.14 Aligned_cols=265 Identities=9% Similarity=0.059 Sum_probs=158.7
Q ss_pred hhhcCCCHHHHHHHHHHHHHHHccCcccc-hhcccCCcHHHHHHHhhccccCCCHHHHHHHHHHHHHHhccCC--CCCcc
Q 036199 388 SRLTELNWDCQCKVIEDYETRLEHDNQVS-HSLSSTNFVEPLIRFLRDARDLHDSRAQRIGCRLLLAFVSKNR--SGIPY 464 (710)
Q Consensus 388 ~~L~s~~~e~q~~Al~~L~~Lak~~~~~r-~~I~~~G~I~~LV~lL~s~~~~~d~~~q~~A~~~L~nL~~~~~--~k~~i 464 (710)
..+.+.++.++..+++.+..++..-.... ..-.-...++.|+..|.+ ++.++..|+.+|.++..... ....+
T Consensus 418 ~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~l~~l~~~l~~-----~~~v~~~a~~al~~l~~~~~~~~~~~l 492 (861)
T 2bpt_A 418 NLMNDQSLQVKETTAWCIGRIADSVAESIDPQQHLPGVVQACLIGLQD-----HPKVATNCSWTIINLVEQLAEATPSPI 492 (861)
T ss_dssp HGGGCSCHHHHHHHHHHHHHHHHHHGGGSCTTTTHHHHHHHHHHHHTS-----CHHHHHHHHHHHHHHHHHHSSSSSCGG
T ss_pred HHcCCCcHHHHHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHHhcc-----ChHHHHHHHHHHHHHHHhcccccchhh
Confidence 45566778888888888877775422110 000112456667777754 38899999999998854321 11111
Q ss_pred --ccccchHHHHHHhccCc----HHHHHHHHHHHhccCchhhHHHhhhCcHHHHHHhhcCC---------------CHHH
Q 036199 465 --LNEDLFSLLASFLHSAA----ATEETLAILVALSSYAYFISKIVASGALASILNMLDSP---------------NGKF 523 (710)
Q Consensus 465 --~~~gaI~~LV~lL~s~~----~~~~Aa~~L~~Ls~~~~nk~~I~~~GaI~~LV~LL~~~---------------~~~~ 523 (710)
.-...++.|+.++.+.+ .+..++.+|..+.........-.-...+|.+++.|... ....
T Consensus 493 ~~~~~~il~~L~~~l~~~d~~~~vr~~a~~al~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~ 572 (861)
T 2bpt_A 493 YNFYPALVDGLIGAANRIDNEFNARASAFSALTTMVEYATDTVAETSASISTFVMDKLGQTMSVDENQLTLEDAQSLQEL 572 (861)
T ss_dssp GGGHHHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHCCGGGHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCcCcchHHHHHHHHHHHHHHHHcchhhHHHHHHHHHHHHHHHHHHHhhhcccCChhhHHHHHHH
Confidence 12466788888887433 23567777777663222111111124677777776421 2456
Q ss_pred HHHHHHHHHHhccCcccccccccccchhchHHhhcC--c-hHHHHHHHHHHHHhcCcc-hHHHHHhhcCChHHHHHHhhc
Q 036199 524 QELAIKILHNLSSDVDIQSHIAPSEFLPKLVPFLKD--A-TLAVSCLVILKNMCNTEH-ARVCVVETSGCLPSVAELLEI 599 (710)
Q Consensus 524 ~~~A~~aL~nLs~~~en~~~iv~aG~V~~Lv~lL~~--~-~~~~~al~iL~nLa~~~e-~r~~i~~~~g~I~~Lv~lL~~ 599 (710)
+..++.+|.+++..-+....-.-...++.++.++.+ . .+.+.++.++..++..-. .-.... ...++.|+..+..
T Consensus 573 ~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~l--~~i~~~l~~~l~~ 650 (861)
T 2bpt_A 573 QSNILTVLAAVIRKSPSSVEPVADMLMGLFFRLLEKKDSAFIEDDVFYAISALAASLGKGFEKYL--ETFSPYLLKALNQ 650 (861)
T ss_dssp HHHHHHHHHHHHHHCGGGTGGGHHHHHHHHHHHHHSTTGGGTHHHHHHHHHHHHHHHGGGGHHHH--HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHccCCCCcHHHHHHHHHHHHHHHHhhhHHHHH--HHHHHHHHHHhcc
Confidence 678888888887532221111113456666777744 3 678888889998886321 111222 2368888888887
Q ss_pred CCHHHHHHHHHHHHHHhcCChHHHHHHHhCCchHHHHHHhhcCC--HHHHHHHHHHHHHhhhc
Q 036199 600 GSEEDQEHAVAILLCLCSQRDQYCKLVMNEGVIPSLVKISVYGN--DKAKVSALELRRLLRDV 660 (710)
Q Consensus 600 ~s~~~ke~A~~aL~~Lc~~~~~~~~~v~~~G~v~~Lv~L~~~gt--~~~k~kA~~LL~~l~~~ 660 (710)
.++..+..|+.++..++......... .-..+++.|+..+.+.+ ...|..|...+..+...
T Consensus 651 ~~~~vr~~a~~~l~~l~~~~~~~~~~-~~~~l~~~l~~~l~~~~~~~~vr~~~~~~l~~l~~~ 712 (861)
T 2bpt_A 651 VDSPVSITAVGFIADISNSLEEDFRR-YSDAMMNVLAQMISNPNARRELKPAVLSVFGDIASN 712 (861)
T ss_dssp TTSHHHHHHHHHHHHHHHHTGGGGHH-HHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHhchhccc-hHHHHHHHHHHHhCCccccHhhhHHHHHHHHHHHHH
Confidence 78889999999998887654321111 12345677777776654 67888888777655443
|
| >2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.15 E-value=0.0026 Score=64.61 Aligned_cols=187 Identities=12% Similarity=0.180 Sum_probs=122.5
Q ss_pred cchhhcCCCHHHHHHHHHHHHH-HHccCcccchhccc-CCcHHHHHHHhhccccCCCHHHHHHHHHHHHHHhccCC-CCC
Q 036199 386 DLSRLTELNWDCQCKVIEDYET-RLEHDNQVSHSLSS-TNFVEPLIRFLRDARDLHDSRAQRIGCRLLLAFVSKNR-SGI 462 (710)
Q Consensus 386 ~L~~L~s~~~e~q~~Al~~L~~-Lak~~~~~r~~I~~-~G~I~~LV~lL~s~~~~~d~~~q~~A~~~L~nL~~~~~-~k~ 462 (710)
|...+.+.+|..+..|+..|.. ++.+.+.....-.. ...+..|...|.. ..+..++..|+.+|..++..-. ...
T Consensus 21 f~~~l~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~---D~n~~v~~~A~~al~~la~~l~~~~f 97 (249)
T 2qk1_A 21 FQERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQK---DANIQAVALAAQSVELICDKLKTPGF 97 (249)
T ss_dssp HHHHHTCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHH---CSCHHHHHHHHHHHHHHHHHHCTTTS
T ss_pred HHHHhhcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhcc---CCCHHHHHHHHHHHHHHHHhcccccc
Confidence 3367888899999999999999 87654322110111 2446666667732 2688899999999999975433 222
Q ss_pred c-cccccchHHHHHHhccCcH--HHHHHHHHHHhccC-chhhHHHhhhCcHHHHHHhhcCCCHHHHHHHHHHHHHhccCc
Q 036199 463 P-YLNEDLFSLLASFLHSAAA--TEETLAILVALSSY-AYFISKIVASGALASILNMLDSPNGKFQELAIKILHNLSSDV 538 (710)
Q Consensus 463 ~-i~~~gaI~~LV~lL~s~~~--~~~Aa~~L~~Ls~~-~~nk~~I~~~GaI~~LV~LL~~~~~~~~~~A~~aL~nLs~~~ 538 (710)
. -...-.+|.|+..+++... .+.+..+|..++.. +.....-.-...++.|+..|.+.++.++..++.+|..+....
T Consensus 98 ~~~y~~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~~ 177 (249)
T 2qk1_A 98 SKDYVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKEE 177 (249)
T ss_dssp CHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHC
T ss_pred cHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHc
Confidence 2 2234578899999887654 24555666555531 111100001136888999999999999999999999888533
Q ss_pred ccc-ccc---ccccchhchHHhhcC--chHHHHHHHHHHHHhc
Q 036199 539 DIQ-SHI---APSEFLPKLVPFLKD--ATLAVSCLVILKNMCN 575 (710)
Q Consensus 539 en~-~~i---v~aG~V~~Lv~lL~~--~~~~~~al~iL~nLa~ 575 (710)
... ..+ +....+|.|.++|.| +++++.|..+|..++.
T Consensus 178 ~~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~ 220 (249)
T 2qk1_A 178 KDGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIK 220 (249)
T ss_dssp CSCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHH
T ss_pred CCcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 221 111 125778888888866 4688888888888864
|
| >3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus} | Back alignment and structure |
|---|
Probab=97.10 E-value=0.011 Score=58.64 Aligned_cols=203 Identities=13% Similarity=0.128 Sum_probs=144.1
Q ss_pred hhhcCCCHHHHHHHHHHHHHHHccCcccchhcccCCcHHHHHHHhhccccCCCHHHHHHHHHHHHHHhccCCCCCccccc
Q 036199 388 SRLTELNWDCQCKVIEDYETRLEHDNQVSHSLSSTNFVEPLIRFLRDARDLHDSRAQRIGCRLLLAFVSKNRSGIPYLNE 467 (710)
Q Consensus 388 ~~L~s~~~e~q~~Al~~L~~Lak~~~~~r~~I~~~G~I~~LV~lL~s~~~~~d~~~q~~A~~~L~nL~~~~~~k~~i~~~ 467 (710)
+-|+..+..++..|+..|..+.+.-+.......-...++.+++++++ .|.++-..|+.+|.-+..+.. ...
T Consensus 40 ~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~----~dEkval~A~r~L~~LLe~vp-----L~~ 110 (265)
T 3b2a_A 40 ELAGEDDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQ----ENEKVTIKALRALGYLVKDVP-----MGS 110 (265)
T ss_dssp HHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCS----TTHHHHHHHHHHHHHHHTTCC-----BCH
T ss_pred HHHhccchHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhc----cchhHHHHHHHHHHHHHcCCC-----CCH
Confidence 66778889999999999999998854443333345678999999987 789999999999998876543 233
Q ss_pred c----chHHHHHHhccCcH--HHHHHHHHHHhccCchhhHHHhhhCcHHHHHHhhcCCCHHHHHHHHHHHHHhccCcccc
Q 036199 468 D----LFSLLASFLHSAAA--TEETLAILVALSSYAYFISKIVASGALASILNMLDSPNGKFQELAIKILHNLSSDVDIQ 541 (710)
Q Consensus 468 g----aI~~LV~lL~s~~~--~~~Aa~~L~~Ls~~~~nk~~I~~~GaI~~LV~LL~~~~~~~~~~A~~aL~nLs~~~en~ 541 (710)
+ .+..|..++.+++. .++|+-.|..|...... .+.+..|.+++.+.+.+++..|.++|.|++...+++
T Consensus 111 ~~y~Kl~~aL~dlik~~~~il~~eaae~Lgklkv~~~~------~~V~~~l~sLl~Skd~~vK~agl~~L~eia~~S~D~ 184 (265)
T 3b2a_A 111 KTFLKAAKTLVSLLESPDDMMRIETIDVLSKLQPLEDS------KLVRTYINELVVSPDLYTKVAGFCLFLNMLNSSADS 184 (265)
T ss_dssp HHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHCCBSCCC------HHHHHHHHHHHTCSSHHHHHHHHHHHHHHGGGCSSC
T ss_pred HHHHHHHHHHHHHhcCCCchHHHHHHHHhCcCCcccch------HHHHHHHHHHHhCCChhHHHHHHHHHHHhhcccCCH
Confidence 3 45666667777765 37899999888433222 345678889999999999999999999999866554
Q ss_pred cccccccchhchHHhhc--CchHHHHHHHHHHHHhcCc---chHHHHHhhcCChHHHHHHhh--cCCHHHHHHHHHH
Q 036199 542 SHIAPSEFLPKLVPFLK--DATLAVSCLVILKNMCNTE---HARVCVVETSGCLPSVAELLE--IGSEEDQEHAVAI 611 (710)
Q Consensus 542 ~~iv~aG~V~~Lv~lL~--~~~~~~~al~iL~nLa~~~---e~r~~i~~~~g~I~~Lv~lL~--~~s~~~ke~A~~a 611 (710)
..+ .+++.-+-.+|+ |+.+.+.|+.+|..+.+.+ +....+.. |-..|+-|- .|.|..+..|-.+
T Consensus 185 ~i~--~~I~~eI~elL~~eD~~l~e~aLd~Le~ils~pi~~~~~~~~~~----~~~~v~~l~~~~~~~~~~~ka~~v 255 (265)
T 3b2a_A 185 GHL--TLILDEIPSLLQNDNEFIVELALDVLEKALSFPLLENVKIELLK----ISRIVDGLVYREGAPIIRLKAKKV 255 (265)
T ss_dssp CCG--GGTTTTHHHHHTCSCHHHHHHHHHHHHHHTTSCCCSCCHHHHHH----HHHHHHHGGGCSSCHHHHHHHHHH
T ss_pred HHH--HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCcccHhHHHHHHH----HHHHHHHHHHhcCChhHHHHHHHH
Confidence 433 244455556663 4678999999999998843 33333332 444555333 5888887776544
|
| >1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 | Back alignment and structure |
|---|
Probab=96.94 E-value=0.00021 Score=64.95 Aligned_cols=117 Identities=15% Similarity=0.180 Sum_probs=79.9
Q ss_pred cccchHHHHHHhccCcHH--HHHHHHHHHhccCchhhHHHhhhCcHHHHHHhhcCCCHHHHHHHHHHHHHhccCcccccc
Q 036199 466 NEDLFSLLASFLHSAAAT--EETLAILVALSSYAYFISKIVASGALASILNMLDSPNGKFQELAIKILHNLSSDVDIQSH 543 (710)
Q Consensus 466 ~~gaI~~LV~lL~s~~~~--~~Aa~~L~~Ls~~~~nk~~I~~~GaI~~LV~LL~~~~~~~~~~A~~aL~nLs~~~en~~~ 543 (710)
....++.|+.+|++++.. ..|+.+|..+. . ..++.|+.+|.+.++.++..|+.+|.++..
T Consensus 10 ~~~~~~~l~~~L~~~~~~vR~~A~~~L~~~~----------~-~~~~~L~~~L~d~~~~vR~~A~~aL~~~~~------- 71 (131)
T 1te4_A 10 HSSGLVPRGSHMADENKWVRRDVSTALSRMG----------D-EAFEPLLESLSNEDWRIRGAAAWIIGNFQD------- 71 (131)
T ss_dssp -----------CCSSCCCSSSSCCSSTTSCS----------S-TTHHHHHHGGGCSCHHHHHHHHHHHGGGCS-------
T ss_pred ccccHHHHHHHhcCCCHHHHHHHHHHHHHhC----------c-hHHHHHHHHHcCCCHHHHHHHHHHHHhcCC-------
Confidence 456677888888776542 35555554332 1 137999999999999999999999988762
Q ss_pred cccccchhchHHhhcC--chHHHHHHHHHHHHhcCcchHHHHHhhcCChHHHHHHhhcCCHHHHHHHHHHHHH
Q 036199 544 IAPSEFLPKLVPFLKD--ATLAVSCLVILKNMCNTEHARVCVVETSGCLPSVAELLEIGSEEDQEHAVAILLC 614 (710)
Q Consensus 544 iv~aG~V~~Lv~lL~~--~~~~~~al~iL~nLa~~~e~r~~i~~~~g~I~~Lv~lL~~~s~~~ke~A~~aL~~ 614 (710)
.++++.|+.+|.+ +.++..|+.+|..+.. ..+++.|+.++...++.++..|+.+|..
T Consensus 72 ---~~a~~~L~~~L~d~~~~VR~~A~~aL~~~~~-----------~~a~~~L~~~l~d~~~~vr~~A~~aL~~ 130 (131)
T 1te4_A 72 ---ERAVEPLIKLLEDDSGFVRSGAARSLEQIGG-----------ERVRAAMEKLAETGTGFARKVAVNYLET 130 (131)
T ss_dssp ---HHHHHHHHHHHHHCCTHHHHHHHHHHHHHCS-----------HHHHHHHHHHTTSCCTHHHHHHHHHGGG
T ss_pred ---HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------HHHHHHHHHHHhCCCHHHHHHHHHHHHh
Confidence 3578999999954 5678889998888752 3457889999988899999999988753
|
| >1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 | Back alignment and structure |
|---|
Probab=96.90 E-value=9.4e-05 Score=67.29 Aligned_cols=118 Identities=18% Similarity=0.139 Sum_probs=84.2
Q ss_pred hhCcHHHHHHhhcCCCHHHHHHHHHHHHHhccCcccccccccccchhchHHhhcCc--hHHHHHHHHHHHHhcCcchHHH
Q 036199 505 ASGALASILNMLDSPNGKFQELAIKILHNLSSDVDIQSHIAPSEFLPKLVPFLKDA--TLAVSCLVILKNMCNTEHARVC 582 (710)
Q Consensus 505 ~~GaI~~LV~LL~~~~~~~~~~A~~aL~nLs~~~en~~~iv~aG~V~~Lv~lL~~~--~~~~~al~iL~nLa~~~e~r~~ 582 (710)
....++.|+.+|.++++.++..|+.+|.++.. ..++.|+.+|.++ .++..|+.+|.++..
T Consensus 10 ~~~~~~~l~~~L~~~~~~vR~~A~~~L~~~~~-----------~~~~~L~~~L~d~~~~vR~~A~~aL~~~~~------- 71 (131)
T 1te4_A 10 HSSGLVPRGSHMADENKWVRRDVSTALSRMGD-----------EAFEPLLESLSNEDWRIRGAAAWIIGNFQD------- 71 (131)
T ss_dssp -----------CCSSCCCSSSSCCSSTTSCSS-----------TTHHHHHHGGGCSCHHHHHHHHHHHGGGCS-------
T ss_pred ccccHHHHHHHhcCCCHHHHHHHHHHHHHhCc-----------hHHHHHHHHHcCCCHHHHHHHHHHHHhcCC-------
Confidence 35678889999988888888877777765531 1368999999664 568888888887753
Q ss_pred HHhhcCChHHHHHHhhcCCHHHHHHHHHHHHHHhcCChHHHHHHHhCCchHHHHHHhhcCCHHHHHHHHHHHH
Q 036199 583 VVETSGCLPSVAELLEIGSEEDQEHAVAILLCLCSQRDQYCKLVMNEGVIPSLVKISVYGNDKAKVSALELRR 655 (710)
Q Consensus 583 i~~~~g~I~~Lv~lL~~~s~~~ke~A~~aL~~Lc~~~~~~~~~v~~~G~v~~Lv~L~~~gt~~~k~kA~~LL~ 655 (710)
...++.|+..|...++.++..|+.+|..+.. ..+++.|+.++.+.++.++..|...|.
T Consensus 72 ----~~a~~~L~~~L~d~~~~VR~~A~~aL~~~~~-----------~~a~~~L~~~l~d~~~~vr~~A~~aL~ 129 (131)
T 1te4_A 72 ----ERAVEPLIKLLEDDSGFVRSGAARSLEQIGG-----------ERVRAAMEKLAETGTGFARKVAVNYLE 129 (131)
T ss_dssp ----HHHHHHHHHHHHHCCTHHHHHHHHHHHHHCS-----------HHHHHHHHHHTTSCCTHHHHHHHHHGG
T ss_pred ----HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------HHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 2358899999999999999999999988752 235789999999999999999887764
|
| >3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus} | Back alignment and structure |
|---|
Probab=96.90 E-value=0.0074 Score=59.99 Aligned_cols=216 Identities=15% Similarity=0.116 Sum_probs=150.1
Q ss_pred CCcHHHHHHHhhccccCCCHHHHHHHHHHHHHHhccCCC-CCccccccchHHHHHHhccCcHH--HHHHHHHHHhc-cCc
Q 036199 422 TNFVEPLIRFLRDARDLHDSRAQRIGCRLLLAFVSKNRS-GIPYLNEDLFSLLASFLHSAAAT--EETLAILVALS-SYA 497 (710)
Q Consensus 422 ~G~I~~LV~lL~s~~~~~d~~~q~~A~~~L~nL~~~~~~-k~~i~~~gaI~~LV~lL~s~~~~--~~Aa~~L~~Ls-~~~ 497 (710)
.+.+..|+.+|.. .|..++.+|+.+|-++...... .....-...++.++.++++.+.+ -.|..+|..|- ..+
T Consensus 32 e~~l~~L~~LL~d----kD~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vp 107 (265)
T 3b2a_A 32 KRALFLILELAGE----DDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQENEKVTIKALRALGYLVKDVP 107 (265)
T ss_dssp HHHHHHHHHHTTS----SCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCC
T ss_pred hhHHHHHHHHHhc----cchHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCC
Confidence 3467888999966 7999999999999998654211 11112357899999999888764 47788876554 222
Q ss_pred hhhHHHhhhCcHHHHHHhhcCCCHHHHHHHHHHHHHhccCcccccccccccchhchHHhhcC--chHHHHHHHHHHHHhc
Q 036199 498 YFISKIVASGALASILNMLDSPNGKFQELAIKILHNLSSDVDIQSHIAPSEFLPKLVPFLKD--ATLAVSCLVILKNMCN 575 (710)
Q Consensus 498 ~nk~~I~~~GaI~~LV~LL~~~~~~~~~~A~~aL~nLs~~~en~~~iv~aG~V~~Lv~lL~~--~~~~~~al~iL~nLa~ 575 (710)
-....+. -++.+|.+++.++++-....|+..|..|.. .-..-+++..|..++.+ ..+...++.+|.+++.
T Consensus 108 L~~~~y~--Kl~~aL~dlik~~~~il~~eaae~Lgklkv------~~~~~~V~~~l~sLl~Skd~~vK~agl~~L~eia~ 179 (265)
T 3b2a_A 108 MGSKTFL--KAAKTLVSLLESPDDMMRIETIDVLSKLQP------LEDSKLVRTYINELVVSPDLYTKVAGFCLFLNMLN 179 (265)
T ss_dssp BCHHHHH--HHHHHHHHHTTSCCHHHHHHHHHHHHHCCB------SCCCHHHHHHHHHHHTCSSHHHHHHHHHHHHHHGG
T ss_pred CCHHHHH--HHHHHHHHHhcCCCchHHHHHHHHhCcCCc------ccchHHHHHHHHHHHhCCChhHHHHHHHHHHHhhc
Confidence 2222222 146788999999999999999999998831 12234667788888855 4567888889999987
Q ss_pred CcchHHHHHhhcCChHHHHHHhhcCCHHHHHHHHHHHHHHhcCChHHHHHHHhCCchHHHH-------HHh-hcCCHHHH
Q 036199 576 TEHARVCVVETSGCLPSVAELLEIGSEEDQEHAVAILLCLCSQRDQYCKLVMNEGVIPSLV-------KIS-VYGNDKAK 647 (710)
Q Consensus 576 ~~e~r~~i~~~~g~I~~Lv~lL~~~s~~~ke~A~~aL~~Lc~~~~~~~~~v~~~G~v~~Lv-------~L~-~~gt~~~k 647 (710)
..+....+ ...+.-+-.+|.+.++..++.|+.+|..+.+.+-. +.+++.+. .|. ..|.|..+
T Consensus 180 ~S~D~~i~---~~I~~eI~elL~~eD~~l~e~aLd~Le~ils~pi~-------~~~~~~~~~~~~~v~~l~~~~~~~~~~ 249 (265)
T 3b2a_A 180 SSADSGHL---TLILDEIPSLLQNDNEFIVELALDVLEKALSFPLL-------ENVKIELLKISRIVDGLVYREGAPIIR 249 (265)
T ss_dssp GCSSCCCG---GGTTTTHHHHHTCSCHHHHHHHHHHHHHHTTSCCC-------SCCHHHHHHHHHHHHHGGGCSSCHHHH
T ss_pred ccCCHHHH---HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCccc-------HhHHHHHHHHHHHHHHHHHhcCChhHH
Confidence 43322111 13455566788899999999999999999888621 23333332 234 57899999
Q ss_pred HHHHHHHHHhhh
Q 036199 648 VSALELRRLLRD 659 (710)
Q Consensus 648 ~kA~~LL~~l~~ 659 (710)
.+|...-..+-.
T Consensus 250 ~ka~~v~~~le~ 261 (265)
T 3b2a_A 250 LKAKKVSDLIDS 261 (265)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999887766543
|
| >2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A | Back alignment and structure |
|---|
Probab=96.82 E-value=0.041 Score=63.40 Aligned_cols=240 Identities=15% Similarity=0.176 Sum_probs=147.9
Q ss_pred hhh--cCCCHHHHHHHHHHHHHHHccCcccchhcccCCcHHHHHHHhhccccCCCHHHHHHHHHHHHHHhccCCCCCccc
Q 036199 388 SRL--TELNWDCQCKVIEDYETRLEHDNQVSHSLSSTNFVEPLIRFLRDARDLHDSRAQRIGCRLLLAFVSKNRSGIPYL 465 (710)
Q Consensus 388 ~~L--~s~~~e~q~~Al~~L~~Lak~~~~~r~~I~~~G~I~~LV~lL~s~~~~~d~~~q~~A~~~L~nL~~~~~~k~~i~ 465 (710)
..| .+.++.++.+|+..+..+.+.+++.. ...++++.+.++|.+ .|+.++.+|+.+|..+..++.. .
T Consensus 153 ~~l~~~d~~~~VRK~A~~al~kl~~~~p~~~---~~~~~~~~l~~lL~d----~d~~V~~~a~~~l~~i~~~~~~--~-- 221 (621)
T 2vgl_A 153 KILVAGDTMDSVKQSAALCLLRLYRTSPDLV---PMGDWTSRVVHLLND----QHLGVVTAATSLITTLAQKNPE--E-- 221 (621)
T ss_dssp HHHHCSSSCHHHHHHHHHHHHHHHHHCGGGC---CCCSCHHHHHHHTTC----SCHHHHHHHHHHHHHHHHHCHH--H--
T ss_pred HHHhCCCCCHHHHHHHHHHHHHHHHhChhhc---CchhHHHHHHHHhCC----CCccHHHHHHHHHHHHHHhChH--H--
Confidence 445 56789999999999999988766532 235899999999965 7899999999999998654321 0
Q ss_pred cccchHHHHHHhc----cC-------------cH--HHHHHHHHHHhccC--chhhHHHhhhCcHHHHHHhhc-CC----
Q 036199 466 NEDLFSLLASFLH----SA-------------AA--TEETLAILVALSSY--AYFISKIVASGALASILNMLD-SP---- 519 (710)
Q Consensus 466 ~~gaI~~LV~lL~----s~-------------~~--~~~Aa~~L~~Ls~~--~~nk~~I~~~GaI~~LV~LL~-~~---- 519 (710)
-...++.++..|. .+ +. +......|..++.. ++.+..+.+ .+..++..+. ..
T Consensus 222 ~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~~~~~~~d~~~~~~l~~--~L~~il~~~~~~~ks~~ 299 (621)
T 2vgl_A 222 FKTSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYPPPEDPAVRGRLTE--CLETILNKAQEPPKSKK 299 (621)
T ss_dssp HTTHHHHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHHGGGSSSCSSHHHHHHHHH--HHHHHHHHHHSCCSCSS
T ss_pred HHHHHHHHHHHHHHHHhCCCCCccchhhcCCCCchHHHHHHHHHHHhCCCCCHHHHHHHHH--HHHHHHHhhccCccccc
Confidence 1234555555443 22 11 12445555555542 233332221 3333443321 11
Q ss_pred ----C--HHHHHHHHHHHHHhccCcccccccccccchhchHHhhc--CchHHHHHHHHHHHHhcCcchHHHHHhhcCChH
Q 036199 520 ----N--GKFQELAIKILHNLSSDVDIQSHIAPSEFLPKLVPFLK--DATLAVSCLVILKNMCNTEHARVCVVETSGCLP 591 (710)
Q Consensus 520 ----~--~~~~~~A~~aL~nLs~~~en~~~iv~aG~V~~Lv~lL~--~~~~~~~al~iL~nLa~~~e~r~~i~~~~g~I~ 591 (710)
+ ..+.-.|+.++..+...++- ...++..|..+|. +++++-.++..|..++........+. ....
T Consensus 300 l~~~n~~~aVl~ea~~~i~~l~~~~~~-----~~~~~~~L~~~L~~~~~niry~aL~~l~~l~~~~~~~~~~~---~~~~ 371 (621)
T 2vgl_A 300 VQHSNAKNAVLFEAISLIIHHDSEPNL-----LVRACNQLGQFLQHRETNLRYLALESMCTLASSEFSHEAVK---THIE 371 (621)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCCCHHH-----HHHHHHHHHHHSSCSCHHHHHHHHHHHHHHTTCTTTHHHHH---TTHH
T ss_pred ccccchHHHHHHHHHHHHHhcCCcHHH-----HHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhccCcHHHHH---HHHH
Confidence 2 26667788888888632221 1246777888884 45778888999998887543223333 3577
Q ss_pred HHHHHhh-cCCHHHHHHHHHHHHHHhcCChHHHHHHHhCCchHHHHHHhhcCCHHHHHHHHHHHH
Q 036199 592 SVAELLE-IGSEEDQEHAVAILLCLCSQRDQYCKLVMNEGVIPSLVKISVYGNDKAKVSALELRR 655 (710)
Q Consensus 592 ~Lv~lL~-~~s~~~ke~A~~aL~~Lc~~~~~~~~~v~~~G~v~~Lv~L~~~gt~~~k~kA~~LL~ 655 (710)
.++..|. ..+..++..|+.+|..++..+ +...+ +.-|...+.+.+...++.+..-+.
T Consensus 372 ~i~~~L~~d~d~~Ir~~aL~lL~~l~~~~--Nv~~I-----v~eL~~yl~~~d~~~~~~~v~~I~ 429 (621)
T 2vgl_A 372 TVINALKTERDVSVRQRAVDLLYAMCDRS--NAQQI-----VAEMLSYLETADYSIREEIVLKVA 429 (621)
T ss_dssp HHHHHHTTCCCHHHHHHHHHHHHHHCCHH--HHHHH-----HHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred HHHHHhccCCCHhHHHHHHHHHHHHcChh--hHHHH-----HHHHHHHHHhcCHHHHHHHHHHHH
Confidence 8888888 888999999999999998653 33333 234444444455555544444333
|
| >2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.76 E-value=0.016 Score=58.79 Aligned_cols=176 Identities=10% Similarity=0.110 Sum_probs=118.0
Q ss_pred CCHHHHHHHHHHHHH-HhccCCCCCc--ccc-ccchHHHHHHh-ccCcH--HHHHHHHHHHhccCchhh-HHHh-h--hC
Q 036199 439 HDSRAQRIGCRLLLA-FVSKNRSGIP--YLN-EDLFSLLASFL-HSAAA--TEETLAILVALSSYAYFI-SKIV-A--SG 507 (710)
Q Consensus 439 ~d~~~q~~A~~~L~n-L~~~~~~k~~--i~~-~gaI~~LV~lL-~s~~~--~~~Aa~~L~~Ls~~~~nk-~~I~-~--~G 507 (710)
.+...+..|+..|.. ++... .+.. ..+ ...+..|...| +..+. ...|+.+|..|+..- + ..+. . .-
T Consensus 28 ~~w~eRk~al~~L~~~~~~~~-~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l--~~~~f~~~y~~~ 104 (249)
T 2qk1_A 28 SKWKDRVEALEEFWDSVLSQT-KKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKL--KTPGFSKDYVSL 104 (249)
T ss_dssp SSHHHHHHHHHHHHHHTGGGC-CCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHH--CTTTSCHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHhcC-CccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhc--ccccccHHHHHH
Confidence 678888999999999 86432 1222 122 35677788888 55554 357888888777311 1 1121 1 23
Q ss_pred cHHHHHHhhcCCCHHHHHHHHHHHHHhccCc-ccccccccccchhchHHhhcC--chHHHHHHHHHHHHhcCcch-HHHH
Q 036199 508 ALASILNMLDSPNGKFQELAIKILHNLSSDV-DIQSHIAPSEFLPKLVPFLKD--ATLAVSCLVILKNMCNTEHA-RVCV 583 (710)
Q Consensus 508 aI~~LV~LL~~~~~~~~~~A~~aL~nLs~~~-en~~~iv~aG~V~~Lv~lL~~--~~~~~~al~iL~nLa~~~e~-r~~i 583 (710)
.+|++++.+.+..+.++..+..+|.+++.+- .+...-.-...++.|+..|.+ +.+.+.++..|..++..... ...+
T Consensus 105 llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~~~~~~~~l 184 (249)
T 2qk1_A 105 VFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKEEKDGYSTL 184 (249)
T ss_dssp HHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCCSCSHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCcchhH
Confidence 6899999999988999999999998888532 111100012366677777754 56788899999888863221 0122
Q ss_pred H-hh-cCChHHHHHHhhcCCHHHHHHHHHHHHHHhc
Q 036199 584 V-ET-SGCLPSVAELLEIGSEEDQEHAVAILLCLCS 617 (710)
Q Consensus 584 ~-~~-~g~I~~Lv~lL~~~s~~~ke~A~~aL~~Lc~ 617 (710)
. .- ...+|.|.+.+...++.+|+.|..+|..++.
T Consensus 185 ~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~ 220 (249)
T 2qk1_A 185 QRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIK 220 (249)
T ss_dssp HHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 1 11 3678999999999999999999999988763
|
| >1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A | Back alignment and structure |
|---|
Probab=96.51 E-value=0.019 Score=71.25 Aligned_cols=261 Identities=13% Similarity=0.087 Sum_probs=156.5
Q ss_pred hhhc-CCCHHHHHHHHHHHHHHHccCcccchhcccCCcHHHHHHHhhccccCCCHHHHHHHHHHHHHHhccCCCCCcccc
Q 036199 388 SRLT-ELNWDCQCKVIEDYETRLEHDNQVSHSLSSTNFVEPLIRFLRDARDLHDSRAQRIGCRLLLAFVSKNRSGIPYLN 466 (710)
Q Consensus 388 ~~L~-s~~~e~q~~Al~~L~~Lak~~~~~r~~I~~~G~I~~LV~lL~s~~~~~d~~~q~~A~~~L~nL~~~~~~k~~i~~ 466 (710)
..+. +.++..+..|+..+..++......-.. .-...++.|+..|.+ .+..++..|+.+|..++....... -
T Consensus 140 ~~l~~~~~~~~~~~al~~l~~~~~~~~~~l~~-~~~~ll~~l~~~L~~----~~~~vR~~a~~al~~l~~~~~~~~---~ 211 (1230)
T 1u6g_C 140 SAIAKQEDVSVQLEALDIMADMLSRQGGLLVN-FHPSILTCLLPQLTS----PRLAVRKRTIIALGHLVMSCGNIV---F 211 (1230)
T ss_dssp HHHSCCSCHHHHHHHHHHHHHHHHHTCSSCTT-THHHHHHHHGGGGGC----SSHHHHHHHHHHHHHHTTTC-------C
T ss_pred HHHcCCCchHHHHHHHHHHHHHHHHhHhHHHH-HHHHHHHHHHHHHcC----CcHHHHHHHHHHHHHHHHhcCHHH---H
Confidence 3344 356788899999998888643321110 012344444444443 678999999999999865432221 2
Q ss_pred ccchHHHHHHhccCc---HHHHHHHHHHHhccCchhhHHHh--hhCcHHHHHHhhcCCCHHHHHHHHHHHHHhccCcccc
Q 036199 467 EDLFSLLASFLHSAA---ATEETLAILVALSSYAYFISKIV--ASGALASILNMLDSPNGKFQELAIKILHNLSSDVDIQ 541 (710)
Q Consensus 467 ~gaI~~LV~lL~s~~---~~~~Aa~~L~~Ls~~~~nk~~I~--~~GaI~~LV~LL~~~~~~~~~~A~~aL~nLs~~~en~ 541 (710)
...++.|+..|.+.. .+..++.++..++..... .+. -...+|.++..+.+.+++++..|+.++..++..-...
T Consensus 212 ~~~l~~l~~~L~~~~~~~~r~~a~~~l~~l~~~~~~--~~~~~l~~l~~~ll~~l~d~~~~vR~~a~~~l~~l~~~~~~~ 289 (1230)
T 1u6g_C 212 VDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGH--RIGEYLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCPKE 289 (1230)
T ss_dssp TTHHHHHHHHHHHTCSSCSCTTHHHHHHHHHHHSSG--GGTTSCTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHCTTCC
T ss_pred HHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHhHH--HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHChHH
Confidence 356888888886542 224566666666532111 222 2568999999998888889999999988887532111
Q ss_pred cccccccchhchHHhhcC---------------------------------------chHHHHHHHHHHHHhcC-cchHH
Q 036199 542 SHIAPSEFLPKLVPFLKD---------------------------------------ATLAVSCLVILKNMCNT-EHARV 581 (710)
Q Consensus 542 ~~iv~aG~V~~Lv~lL~~---------------------------------------~~~~~~al~iL~nLa~~-~e~r~ 581 (710)
..-.-...+|.++..+.. ..++..|+.+|..++.. ++.-.
T Consensus 290 ~~~~l~~li~~ll~~l~~d~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~vR~~A~~~l~~l~~~~~~~~~ 369 (1230)
T 1u6g_C 290 VYPHVSTIINICLKYLTYDPNYNYDDEDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLP 369 (1230)
T ss_dssp CHHHHHHHHHHHTTCCCCC------------------------------------CTTHHHHHHHHHHHHHHTTCCTTHH
T ss_pred HHHhHHHHHHHHHHHhCCCCCCCCcccccccccccccccccchhhcccccccccccCHHHHHHHHHHHHHHHHhchhHHH
Confidence 000012234444443320 12355677888888763 22223
Q ss_pred HHHhhcCChHHHHHHhhcCCHHHHHHHHHHHHHHhcCCh----------------HHHH--HHHhCCchHHHHHHhhcCC
Q 036199 582 CVVETSGCLPSVAELLEIGSEEDQEHAVAILLCLCSQRD----------------QYCK--LVMNEGVIPSLVKISVYGN 643 (710)
Q Consensus 582 ~i~~~~g~I~~Lv~lL~~~s~~~ke~A~~aL~~Lc~~~~----------------~~~~--~v~~~G~v~~Lv~L~~~gt 643 (710)
.+.. ..++.|+..+...++.++..|+.+|..++.... .... .-.-..+++.+...+.+.+
T Consensus 370 ~~~~--~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~~~l~~~~ 447 (1230)
T 1u6g_C 370 EFYK--TVSPALISRFKEREENVKADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQVPNIVKALHKQMKEKS 447 (1230)
T ss_dssp HHHT--TTHHHHHSTTSCSSSHHHHHHHHHHHHHHHHHCCC------------CCCHHHHHHHHTTHHHHHHHHHTTCSC
T ss_pred HHHH--HHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhccccccccCccccccccchHHHHHHHhhHHHHHHHHHhccCC
Confidence 3333 467888887777788899999998877764210 0001 1111234566666788899
Q ss_pred HHHHHHHHHHHHHhhhc
Q 036199 644 DKAKVSALELRRLLRDV 660 (710)
Q Consensus 644 ~~~k~kA~~LL~~l~~~ 660 (710)
++.|..+..+|..+-..
T Consensus 448 ~~vr~~~~~~L~~l~~~ 464 (1230)
T 1u6g_C 448 VKTRQCCFNMLTELVNV 464 (1230)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99998888888765544
|
| >3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.43 E-value=0.043 Score=57.57 Aligned_cols=169 Identities=13% Similarity=0.118 Sum_probs=119.2
Q ss_pred HHHHhccCcHH--HHHHHHHHH-hccCchhhHHHhhhCcHHHHHHhhcCCCHHHHHHHHHHHHHhccCcccccccc-ccc
Q 036199 473 LASFLHSAAAT--EETLAILVA-LSSYAYFISKIVASGALASILNMLDSPNGKFQELAIKILHNLSSDVDIQSHIA-PSE 548 (710)
Q Consensus 473 LV~lL~s~~~~--~~Aa~~L~~-Ls~~~~nk~~I~~~GaI~~LV~LL~~~~~~~~~~A~~aL~nLs~~~en~~~iv-~aG 548 (710)
+++-|.+++.. ..+.--|.. ++.+......++..+++..|+++..+++...+..+++||.+|-.+.+.-..++ ...
T Consensus 123 iiekL~~~~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~~~gN~q~Y~L~AL~~LM~~v~Gm~gvvs~~~ 202 (339)
T 3dad_A 123 ILEKLYSSSGPELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAAADHNYQSYILRALGQLMLFVDGMLGVVAHSD 202 (339)
T ss_dssp HHHHHHHCCHHHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTTSCHHHHHHHHHHHHHHTTSHHHHHHHHHCHH
T ss_pred HHHHHhcCCcHHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHhcChHHHHHHHHHHHHHHhccccccchhCCHH
Confidence 33444444332 355555554 55678899999999999999999999999999999999999998766665555 456
Q ss_pred chhchHHhhcC--chHHHHHHHHHHHHhcCcc-hHHHHHhh------c-C--ChHHHHHHhh---cCCHHHHHHHHHHHH
Q 036199 549 FLPKLVPFLKD--ATLAVSCLVILKNMCNTEH-ARVCVVET------S-G--CLPSVAELLE---IGSEEDQEHAVAILL 613 (710)
Q Consensus 549 ~V~~Lv~lL~~--~~~~~~al~iL~nLa~~~e-~r~~i~~~------~-g--~I~~Lv~lL~---~~s~~~ke~A~~aL~ 613 (710)
.|..|..++.+ ..+...|+++|..++...+ +...+.+. . | -.+.|+.+|. .++.+.+.+|...+-
T Consensus 203 fI~~lyslv~s~~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~elq~~amtLIN 282 (339)
T 3dad_A 203 TIQWLYTLCASLSRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADPELLVYTVTLIN 282 (339)
T ss_dssp HHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCccHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHHHHHHHHHHHH
Confidence 77888888854 4678999999999988544 43333221 1 1 2779999997 689999999998875
Q ss_pred HHhcCCh--H----HHHHHHhCCchHHHHHHhhc
Q 036199 614 CLCSQRD--Q----YCKLVMNEGVIPSLVKISVY 641 (710)
Q Consensus 614 ~Lc~~~~--~----~~~~v~~~G~v~~Lv~L~~~ 641 (710)
.+...-+ + ....+.+.|+-..+...+..
T Consensus 283 ~lL~~apd~d~~~di~d~Le~~gi~~~i~r~l~~ 316 (339)
T 3dad_A 283 KTLAALPDQDSFYDVTDALEQQGMEALVQRHLGT 316 (339)
T ss_dssp HHHHHCSSHHHHHHHHHHHHHTTHHHHHHHHHSC
T ss_pred HHHhcCCChhHHHHHHHHHHHccHHHHHHHHHhc
Confidence 5544322 2 23344566766666664443
|
| >2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.41 E-value=0.0033 Score=51.43 Aligned_cols=47 Identities=15% Similarity=0.278 Sum_probs=37.6
Q ss_pred ccccCCccccCCceec-CCCCccchhhHHHHhhh-CCCCCCCCCCccCC
Q 036199 269 FKCPLSLRLMYDPVVI-ESGQTFERMWIQKWFEE-GNHTCPKTKMKLVC 315 (710)
Q Consensus 269 f~CPI~~~~m~DPV~~-~~G~ty~r~~I~~w~~~-g~~~cP~t~~~l~~ 315 (710)
-.|+||.+++..=+.- .|||.|=..||.+||.. +..+||.|++....
T Consensus 16 ~~C~IC~~~i~~g~~C~~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~~ 64 (74)
T 2ct0_A 16 KICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPH 64 (74)
T ss_dssp CBCSSSCCBCSSSEECSSSCCEECHHHHHHHSTTCSSCCCTTTCSCCCS
T ss_pred CcCcchhhHcccCCccCCCCchhhHHHHHHHHHhcCCCCCCCCcCcCCC
Confidence 5699999988743332 79999999999999975 34899999987653
|
| >2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A | Back alignment and structure |
|---|
Probab=96.32 E-value=0.096 Score=60.26 Aligned_cols=244 Identities=10% Similarity=0.105 Sum_probs=152.9
Q ss_pred hhhcCCCHHHHHHHHHHHHHHHccCcccchhcccCCcHHHHHHHh--hccccCCCHHHHHHHHHHHHHHhccCCCCCccc
Q 036199 388 SRLTELNWDCQCKVIEDYETRLEHDNQVSHSLSSTNFVEPLIRFL--RDARDLHDSRAQRIGCRLLLAFVSKNRSGIPYL 465 (710)
Q Consensus 388 ~~L~s~~~e~q~~Al~~L~~Lak~~~~~r~~I~~~G~I~~LV~lL--~s~~~~~d~~~q~~A~~~L~nL~~~~~~k~~i~ 465 (710)
..|.+.++-.+.-|+..|..+.. ++ ++ ...++.+.+.| .+ .++-+++.|+.++.++..... ..+.
T Consensus 118 kDl~~~n~~ir~lALr~L~~i~~--~e----~~-~~l~~~v~~~l~~~d----~~~~VRK~A~~al~kl~~~~p--~~~~ 184 (621)
T 2vgl_A 118 NDLASRNPTFMGLALHCIANVGS--RE----MA-EAFAGEIPKILVAGD----TMDSVKQSAALCLLRLYRTSP--DLVP 184 (621)
T ss_dssp HHHHSCCHHHHHHHHHHHHHHCC--HH----HH-HHHTTHHHHHHHCSS----SCHHHHHHHHHHHHHHHHHCG--GGCC
T ss_pred HhcCCCCHHHHHHHHHHhhccCC--HH----HH-HHHHHHHHHHHhCCC----CCHHHHHHHHHHHHHHHHhCh--hhcC
Confidence 45667788888888888877632 22 11 24566677777 44 789999999999999965332 1222
Q ss_pred cccchHHHHHHhccCcHH--HHHHHHHHHhccCchhhHHHhhhCcHHHHHHhhc----CC-------------CHHHHHH
Q 036199 466 NEDLFSLLASFLHSAAAT--EETLAILVALSSYAYFISKIVASGALASILNMLD----SP-------------NGKFQEL 526 (710)
Q Consensus 466 ~~gaI~~LV~lL~s~~~~--~~Aa~~L~~Ls~~~~nk~~I~~~GaI~~LV~LL~----~~-------------~~~~~~~ 526 (710)
..+.++.|..+|.+.+.. .+|+.+|..++.... ..+ ...+|.+++.|. .+ ++-.+..
T Consensus 185 ~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~--~~~--~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~ 260 (621)
T 2vgl_A 185 MGDWTSRVVHLLNDQHLGVVTAATSLITTLAQKNP--EEF--KTSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVK 260 (621)
T ss_dssp CCSCHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCH--HHH--TTHHHHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHH
T ss_pred chhHHHHHHHHhCCCCccHHHHHHHHHHHHHHhCh--HHH--HHHHHHHHHHHHHHHhCCCCCccchhhcCCCCchHHHH
Confidence 258999999999877653 577888888774321 111 134555555442 22 5677877
Q ss_pred HHHHHHHhccCc--ccccccccccchhchHHhhcC-------------chHHHHHHHHHHHHhcCcchHHHHHhhcCChH
Q 036199 527 AIKILHNLSSDV--DIQSHIAPSEFLPKLVPFLKD-------------ATLAVSCLVILKNMCNTEHARVCVVETSGCLP 591 (710)
Q Consensus 527 A~~aL~nLs~~~--en~~~iv~aG~V~~Lv~lL~~-------------~~~~~~al~iL~nLa~~~e~r~~i~~~~g~I~ 591 (710)
.+..|..++..+ +....+. +.++.++..+.+ ..+.-.|+.++..+...++ +.. .++.
T Consensus 261 il~ll~~~~~~~d~~~~~~l~--~~L~~il~~~~~~~ks~~l~~~n~~~aVl~ea~~~i~~l~~~~~----~~~--~~~~ 332 (621)
T 2vgl_A 261 LLRLLQCYPPPEDPAVRGRLT--ECLETILNKAQEPPKSKKVQHSNAKNAVLFEAISLIIHHDSEPN----LLV--RACN 332 (621)
T ss_dssp HHHHGGGSSSCSSHHHHHHHH--HHHHHHHHHHHSCCSCSSHHHHHHHHHHHHHHHHHHHHHCCCHH----HHH--HHHH
T ss_pred HHHHHHHhCCCCCHHHHHHHH--HHHHHHHHhhccCcccccccccchHHHHHHHHHHHHHhcCCcHH----HHH--HHHH
Confidence 888887777532 2222221 122223322211 1456667777777754332 222 3567
Q ss_pred HHHHHhhcCCHHHHHHHHHHHHHHhcCChHHHHHHHhCCchHHHHHHhh-cCCHHHHHHHHHHHHHhhh
Q 036199 592 SVAELLEIGSEEDQEHAVAILLCLCSQRDQYCKLVMNEGVIPSLVKISV-YGNDKAKVSALELRRLLRD 659 (710)
Q Consensus 592 ~Lv~lL~~~s~~~ke~A~~aL~~Lc~~~~~~~~~v~~~G~v~~Lv~L~~-~gt~~~k~kA~~LL~~l~~ 659 (710)
.|..+|.+.++..|-.|+..|..++...+. ...+ ......++..+. +.+...|.+|..+|..+.+
T Consensus 333 ~L~~~L~~~~~niry~aL~~l~~l~~~~~~-~~~~--~~~~~~i~~~L~~d~d~~Ir~~aL~lL~~l~~ 398 (621)
T 2vgl_A 333 QLGQFLQHRETNLRYLALESMCTLASSEFS-HEAV--KTHIETVINALKTERDVSVRQRAVDLLYAMCD 398 (621)
T ss_dssp HHHHHSSCSCHHHHHHHHHHHHHHTTCTTT-HHHH--HTTHHHHHHHHTTCCCHHHHHHHHHHHHHHCC
T ss_pred HHHHHhcCCCcchHHHHHHHHHHHHhccCc-HHHH--HHHHHHHHHHhccCCCHhHHHHHHHHHHHHcC
Confidence 888889888999999999999999987642 1122 123456666666 7778888888888766543
|
| >2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=96.23 E-value=0.17 Score=48.48 Aligned_cols=209 Identities=15% Similarity=0.154 Sum_probs=139.3
Q ss_pred CCcHHHHHHHhhccccCCCHHHHHHHHHHHHHHhccCCCCCccccccchHHHHHHhccCc-HH--HHHHHHHHHhccCch
Q 036199 422 TNFVEPLIRFLRDARDLHDSRAQRIGCRLLLAFVSKNRSGIPYLNEDLFSLLASFLHSAA-AT--EETLAILVALSSYAY 498 (710)
Q Consensus 422 ~G~I~~LV~lL~s~~~~~d~~~q~~A~~~L~nL~~~~~~k~~i~~~gaI~~LV~lL~s~~-~~--~~Aa~~L~~Ls~~~~ 498 (710)
..++..++.+|.. .--.+|.||+.++.+++..-. -..+..+..|+.+|+... .. ..-+.++.-++..
T Consensus 31 ~~~l~~lI~~LDD----DlwtV~kNAl~vi~~i~~~~~----el~epl~~kL~vm~~ksEaIpltqeIa~a~G~la~i-- 100 (253)
T 2db0_A 31 ESVLKKLIELLDD----DLWTVVKNAISIIMVIAKTRE----DLYEPMLKKLFSLLKKSEAIPLTQEIAKAFGQMAKE-- 100 (253)
T ss_dssp HHHHHHHHHHTTC----SCHHHHHHHHHHHHHHHTTCG----GGHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHhcc----HHHHHHHhHHHHHHHHHHHhH----HHHHHHHHHHHHHHhhcccCchHHHHHHHHhHHHHh--
Confidence 3578889999965 346799999999999866432 123445666666665433 21 4555666555521
Q ss_pred hhHHHhhhCcHHHHHHhhcCCCHHHHHHHHHHHHHhcc-CcccccccccccchhchHHhhcCchHHHHHHHHHHHHhcCc
Q 036199 499 FISKIVASGALASILNMLDSPNGKFQELAIKILHNLSS-DVDIQSHIAPSEFLPKLVPFLKDATLAVSCLVILKNMCNTE 577 (710)
Q Consensus 499 nk~~I~~~GaI~~LV~LL~~~~~~~~~~A~~aL~nLs~-~~en~~~iv~aG~V~~Lv~lL~~~~~~~~al~iL~nLa~~~ 577 (710)
+..++ .+.+|.|..=.+-|++..+-+-..+|..+.. +|+- -.+++.-+..++++++-.++ +.+|.-++.-.
T Consensus 101 -~Pe~v-~~vVp~lfanyrigd~kikIn~~yaLeeIaranP~l-----~~~v~rdi~smltskd~~Dk-l~aLnFi~alG 172 (253)
T 2db0_A 101 -KPELV-KSMIPVLFANYRIGDEKTKINVSYALEEIAKANPML-----MASIVRDFMSMLSSKNREDK-LTALNFIEAMG 172 (253)
T ss_dssp -CHHHH-HHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHCHHH-----HHHHHHHHHHHTSCSSHHHH-HHHHHHHHTCC
T ss_pred -CHHHH-HhhHHHHHHHHhcCCccceecHHHHHHHHHHhChHH-----HHHHHHHHHHHhcCCChHHH-HHHHHHHHHHh
Confidence 11121 2456777777788999999999999988874 3332 23456667788887775555 55666666644
Q ss_pred chHHHHHhhcCChHHHHHHhhcCCHHHHHHHHHHHHHHhcCChHHHHHHHhCCchHHHHHHhhcCCHHHHHHHHHHHHH
Q 036199 578 HARVCVVETSGCLPSVAELLEIGSEEDQEHAVAILLCLCSQRDQYCKLVMNEGVIPSLVKISVYGNDKAKVSALELRRL 656 (710)
Q Consensus 578 e~r~~i~~~~g~I~~Lv~lL~~~s~~~ke~A~~aL~~Lc~~~~~~~~~v~~~G~v~~Lv~L~~~gt~~~k~kA~~LL~~ 656 (710)
++...-+. -.+|.|..+|..++.-++..|+.+|.+++..++..+..+. .-++=..+.++-++.+...-|..
T Consensus 173 en~~~yv~--PfLprL~aLL~D~deiVRaSaVEtL~~lA~~npklRkii~------~kl~e~~D~S~lv~~~V~egL~r 243 (253)
T 2db0_A 173 ENSFKYVN--PFLPRIINLLHDGDEIVRASAVEALVHLATLNDKLRKVVI------KRLEELNDTSSLVNKTVKEGISR 243 (253)
T ss_dssp TTTHHHHG--GGHHHHHGGGGCSSHHHHHHHHHHHHHHHTSCHHHHHHHH------HHHHHCCCSCHHHHHHHHHHHHH
T ss_pred ccCccccC--cchHHHHHHHcCcchhhhHHHHHHHHHHHHcCHHHHHHHH------HHHHHhcCcHHHHHHHHHHHHHH
Confidence 44434433 3689999999999999999999999999999987666543 22333456666666665555443
|
| >1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9 | Back alignment and structure |
|---|
Probab=96.14 E-value=0.035 Score=61.05 Aligned_cols=217 Identities=12% Similarity=0.078 Sum_probs=139.0
Q ss_pred HHHHHHHHHHHHHHhccCCCCCcccccc--chHHHHHHhcc----------------CcH---HHHHHHHHHHhccCchh
Q 036199 441 SRAQRIGCRLLLAFVSKNRSGIPYLNED--LFSLLASFLHS----------------AAA---TEETLAILVALSSYAYF 499 (710)
Q Consensus 441 ~~~q~~A~~~L~nL~~~~~~k~~i~~~g--aI~~LV~lL~s----------------~~~---~~~Aa~~L~~Ls~~~~n 499 (710)
...|--++.+|..+...+..|..+.+.+ .++.++.+++. +.. .-+++-+++-|+-.++.
T Consensus 182 ~~~~~i~v~~L~~Ll~~~~~R~~f~~~~~~~~~~l~~il~~~~~~~~~~~~~~~~~~~~~~Ql~Y~~ll~iWlLSF~~~~ 261 (480)
T 1ho8_A 182 MDTCYVCIRLLQELAVIPEYRDVIWLHEKKFMPTLFKILQRATDSQLATRIVATNSNHLGIQLQYHSLLLIWLLTFNPVF 261 (480)
T ss_dssp HHHHHHHHHHHHHHHTSHHHHHHHHTTHHHHHHHHHHHHHHHHC-------------CCHHHHHHHHHHHHHHHTTSHHH
T ss_pred CchHHHHHHHHHHHhcchhHHHHHHHcccchhHHHHHHHHHhhccccccccccccCCCccHHHHHHHHHHHHHHHcCHHH
Confidence 3445566666766665555555554332 35666554431 111 13788889999988887
Q ss_pred hHHHhhhCcH--HHHHHhhcC-CCHHHHHHHHHHHHHhccCc-cc----ccccccccchhchHHhh-----cCchHHHHH
Q 036199 500 ISKIVASGAL--ASILNMLDS-PNGKFQELAIKILHNLSSDV-DI----QSHIAPSEFLPKLVPFL-----KDATLAVSC 566 (710)
Q Consensus 500 k~~I~~~GaI--~~LV~LL~~-~~~~~~~~A~~aL~nLs~~~-en----~~~iv~aG~V~~Lv~lL-----~~~~~~~~a 566 (710)
...+...+.+ +.|+++++. ....+.+-++.+|.||.... ++ ...++-.|.+++++..| +|+++.+.-
T Consensus 262 ~~~l~~~~i~~~~~L~~i~k~s~KEKvvRv~la~l~Nll~~~~~~~~~~~~~~~~~~~~l~~l~~L~~rk~~Dedl~edl 341 (480)
T 1ho8_A 262 ANELVQKYLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTRVKQHKKVIKQLLLLGNALPTVQSLSERKYSDEELRQDI 341 (480)
T ss_dssp HHHHHTTSHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSSSTTHHHHHHHHHHHHCHHHHHHHHHSSCCSSHHHHHHH
T ss_pred HHHHHhcchHHHHHHHHHHHhhccchhHHHHHHHHHHHhcccchhhhhHHHHHHHHccchHHHHHHhhCCCCcHHHHHHH
Confidence 7777766644 778888854 45788899999999999754 12 12233223335566666 345543331
Q ss_pred HH-------HHHHHhcCcchHHHHHh------------------------h-cCChHHHHHHhhc----------CCHHH
Q 036199 567 LV-------ILKNMCNTEHARVCVVE------------------------T-SGCLPSVAELLEI----------GSEED 604 (710)
Q Consensus 567 l~-------iL~nLa~~~e~r~~i~~------------------------~-~g~I~~Lv~lL~~----------~s~~~ 604 (710)
-. ....|++-++...++.. . -..+..|+++|.+ .++..
T Consensus 342 ~~L~e~L~~~~~~ltsfDeY~~El~sG~L~WSP~H~se~FW~ENa~kf~e~~~~llk~L~~iL~~~~~~~~~~~s~d~~~ 421 (480)
T 1ho8_A 342 SNLKEILENEYQELTSFDEYVAELDSKLLCWSPPHVDNGFWSDNIDEFKKDNYKIFRQLIELLQAKVRNGDVNAKQEKII 421 (480)
T ss_dssp HHHHHHHHHHHHTCCHHHHHHHHHHHTCCCCCGGGGCHHHHHHHSGGGSSGGGHHHHHHHHHHHHHHHTTCCCSHHHHHH
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHhcCCcccCCCccchhHHHHHHHHHHhcchHHHHHHHHHHhhhccccccccCCCcce
Confidence 11 12222322333333321 0 1246788888973 25666
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHhCCchHHHHHHhhcCCHHHHHHHHHHHHHh
Q 036199 605 QEHAVAILLCLCSQRDQYCKLVMNEGVIPSLVKISVYGNDKAKVSALELRRLL 657 (710)
Q Consensus 605 ke~A~~aL~~Lc~~~~~~~~~v~~~G~v~~Lv~L~~~gt~~~k~kA~~LL~~l 657 (710)
...|+.=+..++.+.|.-+..+-+.|+=..++.|+.+.++.+|..|...++-+
T Consensus 422 laVAc~Digefvr~~P~gr~i~~~lg~K~~VM~Lm~h~d~~Vr~~AL~avQkl 474 (480)
T 1ho8_A 422 IQVALNDITHVVELLPESIDVLDKTGGKADIMELLNHSDSRVKYEALKATQAI 474 (480)
T ss_dssp HHHHHHHHHHHHHHCTTHHHHHHHHSHHHHHHHHTSCSSHHHHHHHHHHHHHH
T ss_pred EEeecccHHHHHHHCcchhHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 77777778888988888888999999999999999999999999999888744
|
| >1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3 | Back alignment and structure |
|---|
Probab=95.83 E-value=0.0082 Score=46.95 Aligned_cols=47 Identities=15% Similarity=0.239 Sum_probs=38.9
Q ss_pred cccccCCccccCCceecCCCC-----ccchhhHHHHhh-hCCCCCCCCCCccC
Q 036199 268 VFKCPLSLRLMYDPVVIESGQ-----TFERMWIQKWFE-EGNHTCPKTKMKLV 314 (710)
Q Consensus 268 ~f~CPI~~~~m~DPV~~~~G~-----ty~r~~I~~w~~-~g~~~cP~t~~~l~ 314 (710)
.-.|.||++-..+|.+.+|.. -|=+.|+++|+. +++.+||.|+.++.
T Consensus 6 ~~~CrIC~~~~~~~l~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~ 58 (60)
T 1vyx_A 6 VPVCWICNEELGNERFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYN 58 (60)
T ss_dssp CCEETTTTEECSCCCCCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred CCEeEEeecCCCCceecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeee
Confidence 346999998888898888653 677999999998 47889999998765
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A | Back alignment and structure |
|---|
Probab=95.76 E-value=0.28 Score=59.00 Aligned_cols=247 Identities=13% Similarity=0.161 Sum_probs=162.5
Q ss_pred HHHHHHHHHHHccCcccc---hhcccCCcHHHHHHHhhccccCCCHHHHHHHHHHHHHHhccCCCCCccccccchHHHHH
Q 036199 399 CKVIEDYETRLEHDNQVS---HSLSSTNFVEPLIRFLRDARDLHDSRAQRIGCRLLLAFVSKNRSGIPYLNEDLFSLLAS 475 (710)
Q Consensus 399 ~~Al~~L~~Lak~~~~~r---~~I~~~G~I~~LV~lL~s~~~~~d~~~q~~A~~~L~nL~~~~~~k~~i~~~gaI~~LV~ 475 (710)
..|+..+..++....... .++. +.++.++..+.. .+..++..|..++..+...-. .. .-...+|.|+.
T Consensus 70 ~~a~~~~~~~~~~~~~~~~~e~~~~--~~~~~~~~~~~d----k~~~v~~aa~~~~~~~~~~~~-~~--a~~~~~~~~~~ 140 (986)
T 2iw3_A 70 ANAMQAVAHIANQSNLSPSVEPYIV--QLVPAICTNAGN----KDKEIQSVASETLISIVNAVN-PV--AIKALLPHLTN 140 (986)
T ss_dssp HHHHHHHHHHTCTTTCCTTTHHHHH--TTHHHHHHHTTC----SSHHHHHHHHHHHHHHHHHSC-GG--GHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCCCcccchH--HHHHHHHHHhcC----CchHHHHHHHHHHHHHHHhCC-HH--HHHHHHHHHHH
Confidence 567777777775443211 1111 355666666544 567788888778777744221 11 12678999999
Q ss_pred HhccCcHH---HHHHHHHHHhccCchhhHHHhh--hCcHHHHHHhhcCCCHHHHHHHHHHHHHhccCcccccccccccch
Q 036199 476 FLHSAAAT---EETLAILVALSSYAYFISKIVA--SGALASILNMLDSPNGKFQELAIKILHNLSSDVDIQSHIAPSEFL 550 (710)
Q Consensus 476 lL~s~~~~---~~Aa~~L~~Ls~~~~nk~~I~~--~GaI~~LV~LL~~~~~~~~~~A~~aL~nLs~~~en~~~iv~aG~V 550 (710)
.|.++... ..|+.++..|+... ...++. ...||.+-+.+.+-.+++++.|..++-.+|..-+|+.- ...|
T Consensus 141 ~~~~~~kw~~k~~~l~~~~~~~~~~--~~~~~~~~~~~~p~~~~~~~d~k~~v~~~~~~~~~~~~~~~~n~d~---~~~~ 215 (986)
T 2iw3_A 141 AIVETNKWQEKIAILAAFSAMVDAA--KDQVALRMPELIPVLSETMWDTKKEVKAAATAAMTKATETVDNKDI---ERFI 215 (986)
T ss_dssp HHHHCCCHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHGGGCCCTTT---GGGH
T ss_pred HhccccchHHHHHHHHHHHHHHHHh--HHHHHHhccchhcchHhhcccCcHHHHHHHHHHHHHHHhcCCCcch---hhhH
Confidence 99877654 46777777776432 455553 67899999999888899999999999999976556543 3568
Q ss_pred hchHHhhcCchHHHHHHHHHHHHhcCcchH-HHHHhhcCChHHHHHHhhcCCHHHHHHHHHHHHHHhcCC--hHHHHHHH
Q 036199 551 PKLVPFLKDATLAVSCLVILKNMCNTEHAR-VCVVETSGCLPSVAELLEIGSEEDQEHAVAILLCLCSQR--DQYCKLVM 627 (710)
Q Consensus 551 ~~Lv~lL~~~~~~~~al~iL~nLa~~~e~r-~~i~~~~g~I~~Lv~lL~~~s~~~ke~A~~aL~~Lc~~~--~~~~~~v~ 627 (710)
|.|++.|.+|+-+.+|+..|..-.-..+-- ..+.- .+|.|.+-|...+...+..++-+.-|||.-- +.....+
T Consensus 216 ~~~~~~~~~p~~~~~~~~~l~~~tfv~~v~~~~l~~---~~p~l~r~l~~~~~~~~r~~~~~~~n~~~lv~~~~~~~~f- 291 (986)
T 2iw3_A 216 PSLIQCIADPTEVPETVHLLGATTFVAEVTPATLSI---MVPLLSRGLNERETGIKRKSAVIIDNMCKLVEDPQVIAPF- 291 (986)
T ss_dssp HHHHHHHHCTTHHHHHHHHHTTCCCCSCCCHHHHHH---HHHHHHHHHTSSSHHHHHHHHHHHHHHHTTCCCHHHHHHH-
T ss_pred HHHHHHhcChhhhHHHHHHhhcCeeEeeecchhHHH---HHHHHHhhhccCcchhheeeEEEEcchhhhcCCHHHHhhh-
Confidence 999999988866666655554433322221 11111 3567777777778888999999999999854 2222222
Q ss_pred hCCchHHHHHHh-hcCCHHHHHHHHHHHHHhhhccCC
Q 036199 628 NEGVIPSLVKIS-VYGNDKAKVSALELRRLLRDVAYS 663 (710)
Q Consensus 628 ~~G~v~~Lv~L~-~~gt~~~k~kA~~LL~~l~~~~~~ 663 (710)
=.-.+|-|-... .-..|++|+.|...+..|.+....
T Consensus 292 ~~~l~p~~~~~~~~~~~pe~r~~~~~a~~~l~~~~~~ 328 (986)
T 2iw3_A 292 LGKLLPGLKSNFATIADPEAREVTLRALKTLRRVGNV 328 (986)
T ss_dssp HTTTHHHHHHHTTTCCSHHHHHHHHHHHHHHHHHHTC
T ss_pred hhhhhhHHHHHhhccCCHHHHHHHHHHHHHHHHhhcc
Confidence 234566665543 446899999999999988877543
|
| >1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9 | Back alignment and structure |
|---|
Probab=95.19 E-value=0.15 Score=55.95 Aligned_cols=218 Identities=13% Similarity=0.120 Sum_probs=133.8
Q ss_pred HHHHHHHHHHHHHHHccCcccchhcccC--CcHHHHHHHhhcccc-------------CCCHHHHHHHHHHHHHHhccCC
Q 036199 395 WDCQCKVIEDYETRLEHDNQVSHSLSST--NFVEPLIRFLRDARD-------------LHDSRAQRIGCRLLLAFVSKNR 459 (710)
Q Consensus 395 ~e~q~~Al~~L~~Lak~~~~~r~~I~~~--G~I~~LV~lL~s~~~-------------~~d~~~q~~A~~~L~nL~~~~~ 459 (710)
.+.+.-++..+..++. .++.|..+.+. +.++.++.++....+ ....+.|-+++.++.-++-+..
T Consensus 182 ~~~~~i~v~~L~~Ll~-~~~~R~~f~~~~~~~~~~l~~il~~~~~~~~~~~~~~~~~~~~~~Ql~Y~~ll~iWlLSF~~~ 260 (480)
T 1ho8_A 182 MDTCYVCIRLLQELAV-IPEYRDVIWLHEKKFMPTLFKILQRATDSQLATRIVATNSNHLGIQLQYHSLLLIWLLTFNPV 260 (480)
T ss_dssp HHHHHHHHHHHHHHHT-SHHHHHHHHTTHHHHHHHHHHHHHHHHC-------------CCHHHHHHHHHHHHHHHTTSHH
T ss_pred CchHHHHHHHHHHHhc-chhHHHHHHHcccchhHHHHHHHHHhhccccccccccccCCCccHHHHHHHHHHHHHHHcCHH
Confidence 3445556777776665 35677766543 357888776654311 1135667888888888754432
Q ss_pred CCCccccccc--hHHHHHHhccCcHH---HHHHHHHHHhccCc--h---hhH-HHhhhCcHHHHHHhhcC---CCHHHHH
Q 036199 460 SGIPYLNEDL--FSLLASFLHSAAAT---EETLAILVALSSYA--Y---FIS-KIVASGALASILNMLDS---PNGKFQE 525 (710)
Q Consensus 460 ~k~~i~~~ga--I~~LV~lL~s~~~~---~~Aa~~L~~Ls~~~--~---nk~-~I~~~GaI~~LV~LL~~---~~~~~~~ 525 (710)
.-..+...+. ++.|+.+++....+ +-++++|.||.... . ... .++..++ +++++.|.. .|++..+
T Consensus 261 ~~~~l~~~~i~~~~~L~~i~k~s~KEKvvRv~la~l~Nll~~~~~~~~~~~~~~~~~~~~-l~~l~~L~~rk~~Dedl~e 339 (480)
T 1ho8_A 261 FANELVQKYLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTRVKQHKKVIKQLLLLGNA-LPTVQSLSERKYSDEELRQ 339 (480)
T ss_dssp HHHHHHTTSHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSSSTTHHHHHHHHHHHHCH-HHHHHHHHSSCCSSHHHHH
T ss_pred HHHHHHhcchHHHHHHHHHHHhhccchhHHHHHHHHHHHhcccchhhhhHHHHHHHHccc-hHHHHHHhhCCCCcHHHHH
Confidence 1122223343 36777778766543 57999999998643 1 112 2333444 567777743 3566554
Q ss_pred HHHHHHH-------HhccC------------------------cccccccccc--cchhchHHhhcC------------c
Q 036199 526 LAIKILH-------NLSSD------------------------VDIQSHIAPS--EFLPKLVPFLKD------------A 560 (710)
Q Consensus 526 ~A~~aL~-------nLs~~------------------------~en~~~iv~a--G~V~~Lv~lL~~------------~ 560 (710)
+--...- .|++. .+|..++-+. ..+..|+++|.+ +
T Consensus 340 dl~~L~e~L~~~~~~ltsfDeY~~El~sG~L~WSP~H~se~FW~ENa~kf~e~~~~llk~L~~iL~~~~~~~~~~~s~d~ 419 (480)
T 1ho8_A 340 DISNLKEILENEYQELTSFDEYVAELDSKLLCWSPPHVDNGFWSDNIDEFKKDNYKIFRQLIELLQAKVRNGDVNAKQEK 419 (480)
T ss_dssp HHHHHHHHHHHHHHTCCHHHHHHHHHHHTCCCCCGGGGCHHHHHHHSGGGSSGGGHHHHHHHHHHHHHHHTTCCCSHHHH
T ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHhcCCcccCCCccchhHHHHHHHHHHhcchHHHHHHHHHHhhhccccccccCCCc
Confidence 4332222 22211 1244455542 367889999952 3
Q ss_pred hHHHHHHHHHHHHhc-CcchHHHHHhhcCChHHHHHHhhcCCHHHHHHHHHHHHHH
Q 036199 561 TLAVSCLVILKNMCN-TEHARVCVVETSGCLPSVAELLEIGSEEDQEHAVAILLCL 615 (710)
Q Consensus 561 ~~~~~al~iL~nLa~-~~e~r~~i~~~~g~I~~Lv~lL~~~s~~~ke~A~~aL~~L 615 (710)
.+..-|+.=++.++. .|+||..+-+ -|+=..++++|.+.+++++.+|+.++..+
T Consensus 420 ~~laVAc~Digefvr~~P~gr~i~~~-lg~K~~VM~Lm~h~d~~Vr~~AL~avQkl 474 (480)
T 1ho8_A 420 IIIQVALNDITHVVELLPESIDVLDK-TGGKADIMELLNHSDSRVKYEALKATQAI 474 (480)
T ss_dssp HHHHHHHHHHHHHHHHCTTHHHHHHH-HSHHHHHHHHTSCSSHHHHHHHHHHHHHH
T ss_pred ceEEeecccHHHHHHHCcchhHHHHH-cCcHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 345556666777877 7999987766 68878888899999999999999887654
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=95.04 E-value=0.52 Score=56.23 Aligned_cols=197 Identities=9% Similarity=0.039 Sum_probs=127.1
Q ss_pred cHHHHHHHhhccccCCCHHHHHHHHHHHHHHhccCCCCCccccccchHHHHHHhccCcH---HHHHHHHHHHhccCchhh
Q 036199 424 FVEPLIRFLRDARDLHDSRAQRIGCRLLLAFVSKNRSGIPYLNEDLFSLLASFLHSAAA---TEETLAILVALSSYAYFI 500 (710)
Q Consensus 424 ~I~~LV~lL~s~~~~~d~~~q~~A~~~L~nL~~~~~~k~~i~~~gaI~~LV~lL~s~~~---~~~Aa~~L~~Ls~~~~nk 500 (710)
+++.|...|.. .+....+.|+.+|..+.-... +..++..|+..+.+... .+.++..|..+.
T Consensus 473 v~e~L~~~L~d----d~~~~~~~AalALGli~vGTg------n~~ai~~LL~~~~e~~~e~vrR~aalgLGll~------ 536 (963)
T 4ady_A 473 VYEALKEVLYN----DSATSGEAAALGMGLCMLGTG------KPEAIHDMFTYSQETQHGNITRGLAVGLALIN------ 536 (963)
T ss_dssp HHHHHHHHHHT----CCHHHHHHHHHHHHHHHTTCC------CHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHT------
T ss_pred HHHHHHHHHhc----CCHHHHHHHHHHHhhhhcccC------CHHHHHHHHHHHhccCcHHHHHHHHHHHHhhh------
Confidence 46777887765 345555666667666533322 33466777776643322 234555554433
Q ss_pred HHHhhhCcHHHHHHhhc-CCCHHHHHHHHHHHHHhccCcccccccccccchhchHHhhc---CchHHHHHHHHHHHHhcC
Q 036199 501 SKIVASGALASILNMLD-SPNGKFQELAIKILHNLSSDVDIQSHIAPSEFLPKLVPFLK---DATLAVSCLVILKNMCNT 576 (710)
Q Consensus 501 ~~I~~~GaI~~LV~LL~-~~~~~~~~~A~~aL~nLs~~~en~~~iv~aG~V~~Lv~lL~---~~~~~~~al~iL~nLa~~ 576 (710)
++....++.+++.|. +.++-++..|+.++.--.....|. .+|..|+..+. +..++..|+..|+.++..
T Consensus 537 --~g~~e~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn~------~aIq~LL~~~~~d~~d~VRraAViaLGlI~~g 608 (963)
T 4ady_A 537 --YGRQELADDLITKMLASDESLLRYGGAFTIALAYAGTGNN------SAVKRLLHVAVSDSNDDVRRAAVIALGFVLLR 608 (963)
T ss_dssp --TTCGGGGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCCH------HHHHHHHHHHHHCSCHHHHHHHHHHHHHHTSS
T ss_pred --CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCH------HHHHHHHHHhccCCcHHHHHHHHHHHHhhccC
Confidence 244567888888885 467777777777765444344442 35666676662 346777888888877654
Q ss_pred cchHHHHHhhcCChHHHHHHh-hcCCHHHHHHHHHHHHHHhcCChHHHHHHHhCCchHHHHHHhhcCCHHHHHHHHHHHH
Q 036199 577 EHARVCVVETSGCLPSVAELL-EIGSEEDQEHAVAILLCLCSQRDQYCKLVMNEGVIPSLVKISVYGNDKAKVSALELRR 655 (710)
Q Consensus 577 ~e~r~~i~~~~g~I~~Lv~lL-~~~s~~~ke~A~~aL~~Lc~~~~~~~~~v~~~G~v~~Lv~L~~~gt~~~k~kA~~LL~ 655 (710)
.+ ..++.++.+| +.+++.+|..|+.+|-.+|.+++. ..++..|..++.+.++.++..|.-.|.
T Consensus 609 ~~---------e~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~-------~~aid~L~~L~~D~d~~Vrq~Ai~ALG 672 (963)
T 4ady_A 609 DY---------TTVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGL-------QSAIDVLDPLTKDPVDFVRQAAMIALS 672 (963)
T ss_dssp SC---------SSHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCC-------HHHHHHHHHHHTCSSHHHHHHHHHHHH
T ss_pred CH---------HHHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCc-------HHHHHHHHHHccCCCHHHHHHHHHHHH
Confidence 32 2467777744 468999999999999999987742 124567777888888888888887777
Q ss_pred Hhhhc
Q 036199 656 LLRDV 660 (710)
Q Consensus 656 ~l~~~ 660 (710)
.+--.
T Consensus 673 ~Ig~g 677 (963)
T 4ady_A 673 MILIQ 677 (963)
T ss_dssp HHSTT
T ss_pred HHhcC
Confidence 65533
|
| >3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus} | Back alignment and structure |
|---|
Probab=94.71 E-value=0.28 Score=52.22 Aligned_cols=247 Identities=9% Similarity=0.032 Sum_probs=134.1
Q ss_pred hhcCCCHHHHHHHHHHHHHHHccCcccchhcccCCcHHHHHHHhhccccCCCHHHHHHHHHHHHHHhccCCCCCcccccc
Q 036199 389 RLTELNWDCQCKVIEDYETRLEHDNQVSHSLSSTNFVEPLIRFLRDARDLHDSRAQRIGCRLLLAFVSKNRSGIPYLNED 468 (710)
Q Consensus 389 ~L~s~~~e~q~~Al~~L~~Lak~~~~~r~~I~~~G~I~~LV~lL~s~~~~~d~~~q~~A~~~L~nL~~~~~~k~~i~~~g 468 (710)
-+.+.+.+.++-.--.+..+++..++.- + ++..|.+=+.+ +++-.+-.|+.+|.++...+ +-..
T Consensus 76 l~~s~d~~lKrLvYLyl~~~~~~~~e~i--L----v~Nsl~kDl~~----~N~~iR~lALRtL~~I~~~~------m~~~ 139 (355)
T 3tjz_B 76 LFQSNDPTLRRMCYLTIKEMSCIAEDVI--I----VTSSLTKDMTG----KEDSYRGPAVRALCQITDST------MLQA 139 (355)
T ss_dssp GGGCCCHHHHHHHHHHHHHHTTTSSCGG--G----GHHHHHHHHHS----SCHHHHHHHHHHHHHHCCTT------THHH
T ss_pred HhcCCCHHHHHHHHHHHHHhCCCHHHHH--H----HHHHHHhhcCC----CcHhHHHHHHHHHhcCCCHH------HHHH
Confidence 3456666666555556666666533211 1 23344444444 78899999999999984332 2345
Q ss_pred chHHHHHHhccCcHH--HHHHHHHHHhccCchhhHHHhhhCcHHHHHHhhcCCCHHHHHHHHHHHHHhccCccccccccc
Q 036199 469 LFSLLASFLHSAAAT--EETLAILVALSSYAYFISKIVASGALASILNMLDSPNGKFQELAIKILHNLSSDVDIQSHIAP 546 (710)
Q Consensus 469 aI~~LV~lL~s~~~~--~~Aa~~L~~Ls~~~~nk~~I~~~GaI~~LV~LL~~~~~~~~~~A~~aL~nLs~~~en~~~iv~ 546 (710)
..+.+.+.|.+.+.. ..|+-+...|.... ...+ .+.+..+-+++.+.++-++-+|+.+|+.+...+
T Consensus 140 l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~--pe~v--~~~~~~l~~ll~d~n~~V~~~Al~lL~ei~~~d-------- 207 (355)
T 3tjz_B 140 IERYMKQAIVDKVPSVSSSALVSSLHLLKCS--FDVV--KRWVNEAQEAASSDNIMVQYHALGLLYHVRKND-------- 207 (355)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHTTTC--HHHH--HTTHHHHHHHTTCSSHHHHHHHHHHHHHHHTTC--------
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHHhccC--HHHH--HHHHHHHHHHhcCCCccHHHHHHHHHHHHHhhc--------
Confidence 667777777777763 56666666665332 2222 368999999999999999999999999998643
Q ss_pred ccchhchHHhhcCchH--HHHHHHHHHHHhcC-cchHHHHHhhcCChHHHHHHhhcCCHHHHHHHHHHHHHHhcCChHHH
Q 036199 547 SEFLPKLVPFLKDATL--AVSCLVILKNMCNT-EHARVCVVETSGCLPSVAELLEIGSEEDQEHAVAILLCLCSQRDQYC 623 (710)
Q Consensus 547 aG~V~~Lv~lL~~~~~--~~~al~iL~nLa~~-~e~r~~i~~~~g~I~~Lv~lL~~~s~~~ke~A~~aL~~Lc~~~~~~~ 623 (710)
..++..|+..+....+ .-.-+.+|..++.. ++.-.. .....++.|...|++.++.+.-.|+.++..+...+..
T Consensus 208 ~~a~~kLv~~l~~~~l~~~~~q~~llr~l~~~~~~d~~~--~~~~~~~~l~~~L~~~~~aVvyEa~k~I~~l~~~~~~-- 283 (355)
T 3tjz_B 208 RLAVSKMISKFTRHGLKSPFAYCMMIRVASRQLEDEDGS--RDSPLFDFIESCLRNKHEMVVYEAASAIVNLPGCSAK-- 283 (355)
T ss_dssp HHHHHHHHHHHHSSCCSCHHHHHHHHHHHTCC-------------------CCCCCSSHHHHHHHHHHHTC---------
T ss_pred hHHHHHHHHHHhcCCCcChHHHHHHHHHHHHhccccchh--hHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCHH--
Confidence 1245566666644321 11123344444331 111001 1134556667778888999999999998887553321
Q ss_pred HHHHhCCchHHHHHHhhcCCHHHHHHHHHHHHHhhhccCCccccCCC
Q 036199 624 KLVMNEGVIPSLVKISVYGNDKAKVSALELRRLLRDVAYSVEQQCFG 670 (710)
Q Consensus 624 ~~v~~~G~v~~Lv~L~~~gt~~~k~kA~~LL~~l~~~~~~~~~~~~~ 670 (710)
.. ..++..|..++.+.++..|--|...|..+......-.+.|..
T Consensus 284 --~~-~~a~~~L~~fLss~d~niryvaLr~L~~l~~~~P~~v~~~n~ 327 (355)
T 3tjz_B 284 --EL-APAVSVLQLFCSSPKAALRYAAVRTLNKVAMKHPSAVTACNL 327 (355)
T ss_dssp -------CCCTHHHHHHSSSSSSHHHHHHCC----------------
T ss_pred --HH-HHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHCcHHHHHHHH
Confidence 11 334567777777888888888888777666554444443433
|
| >3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=94.67 E-value=0.0082 Score=62.82 Aligned_cols=48 Identities=23% Similarity=0.503 Sum_probs=38.3
Q ss_pred cccccCCccccCC----cee----cCCCCccchhhHHHHhhhCC----------CCCCCCCCccCC
Q 036199 268 VFKCPLSLRLMYD----PVV----IESGQTFERMWIQKWFEEGN----------HTCPKTKMKLVC 315 (710)
Q Consensus 268 ~f~CPI~~~~m~D----PV~----~~~G~ty~r~~I~~w~~~g~----------~~cP~t~~~l~~ 315 (710)
...|+||...+.+ |-. ..|||.|-..||.+||.+.. .+||.|+++++.
T Consensus 308 ~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs~ 373 (381)
T 3k1l_B 308 ELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLST 373 (381)
T ss_dssp CCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEEG
T ss_pred CccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCCc
Confidence 3569999999988 533 36899999999999997521 469999998753
|
| >3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=94.24 E-value=0.49 Score=52.75 Aligned_cols=231 Identities=13% Similarity=0.154 Sum_probs=147.6
Q ss_pred hhhcCCCHHHHHHHHHHHHHHHccCcc--cchhcccCCcHHHHHHHhhcc------ccCCCHHHHHHHHHHHHHHhccCC
Q 036199 388 SRLTELNWDCQCKVIEDYETRLEHDNQ--VSHSLSSTNFVEPLIRFLRDA------RDLHDSRAQRIGCRLLLAFVSKNR 459 (710)
Q Consensus 388 ~~L~s~~~e~q~~Al~~L~~Lak~~~~--~r~~I~~~G~I~~LV~lL~s~------~~~~d~~~q~~A~~~L~nL~~~~~ 459 (710)
..|-+..|+.+-.|+-.||.+.+.... .|..-......-.|+.+|.-+ .+..-.-+++.++.+|..+ .+-.
T Consensus 181 ~DLFdp~WEiRHGAALGLREILR~hG~GAGR~~~~N~DLAvRLLCVLALDRFGDYVSDqVVAPVRETaAQtLGaL-~hLp 259 (800)
T 3oc3_A 181 DNLLSYEWYKRHGAFLAFAAMFSEIDNGGDIQIRVDSKLFSKIYEILVTDKFNDFVDDRTVAPVRDAAAYLLSRI-YPLI 259 (800)
T ss_dssp HHTTCSSHHHHHHHHHHHHHHHHHCC----CCCCCCTTHHHHHHHHHHHBCCBBCSSSSCBCHHHHHHHHHHHHH-TTTS
T ss_pred HHhcCcchhhhhHHHHHHHHHHHHhccCCceeccccHHHHHHHHHHHHhccccccccCeeeeehHHHHHHHHHHH-HhCC
Confidence 566778999999999999998876432 122111224455555555332 1122346788899888887 4322
Q ss_pred CCCccccccchHHHHHHhccCcHHH---HHHHHHHHhccCchhhHHHh-hhCcHHHHHHhhcCCCHHHHHHHHHHHHHhc
Q 036199 460 SGIPYLNEDLFSLLASFLHSAAATE---ETLAILVALSSYAYFISKIV-ASGALASILNMLDSPNGKFQELAIKILHNLS 535 (710)
Q Consensus 460 ~k~~i~~~gaI~~LV~lL~s~~~~~---~Aa~~L~~Ls~~~~nk~~I~-~~GaI~~LV~LL~~~~~~~~~~A~~aL~nLs 535 (710)
.. ..++..|+..+..+. .+ .+.-.|..+ +..+. =.++++.++..|.+.+.+++..|+.+|..++
T Consensus 260 ~e-----~~IL~qLV~~l~~~~-WEVRHGGLLGLKYL------~DLL~~Ld~Vv~aVL~GL~D~DDDVRAVAAetLiPIA 327 (800)
T 3oc3_A 260 GP-----NDIIEQLVGFLDSGD-WQVQFSGLIALGYL------KEFVEDKDGLCRKLVSLLSSPDEDIKLLSAELLCHFP 327 (800)
T ss_dssp CS-----CCHHHHHTTGGGCSC-HHHHHHHHHHHHHT------GGGCCCHHHHHHHHHHHTTCSSHHHHHHHHHHHTTSC
T ss_pred hh-----HHHHHHHHhhcCCCC-eeehhhhHHHHHHH------HHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHhhhhc
Confidence 21 344555554333332 33 445555566 22222 2567889999999999999999999999888
Q ss_pred cCcccccccccccchhchHHhh----cC-c---hHHHHHHHHHHHHhcCcchHHHHHhhcCChHHHHHHhhcCCHHHHHH
Q 036199 536 SDVDIQSHIAPSEFLPKLVPFL----KD-A---TLAVSCLVILKNMCNTEHARVCVVETSGCLPSVAELLEIGSEEDQEH 607 (710)
Q Consensus 536 ~~~en~~~iv~aG~V~~Lv~lL----~~-~---~~~~~al~iL~nLa~~~e~r~~i~~~~g~I~~Lv~lL~~~s~~~ke~ 607 (710)
..+.++.|+..+ .+ . ..+...+..|+.|++.+.. ....+..||.|.-.+++.-..+|..
T Consensus 328 ----------~p~~l~~LL~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~~---a~~dp~LVPRL~PFLRHtITSVR~A 394 (800)
T 3oc3_A 328 ----------ITDSLDLVLEKCWKNIESEELISVSKTSNLSLLTKIYRENPE---LSIPPERLKDIFPCFTSPVPEVRTS 394 (800)
T ss_dssp ----------CSSTHHHHHHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCTT---CCCCSGGGGGTGGGGTCSSHHHHHH
T ss_pred ----------chhhHHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHcCCcc---cccChHHHHHHHhhhcCCcHHHHHH
Confidence 223455555444 32 2 2366678888888886631 1112467899999999999999999
Q ss_pred HHHHHHHHhcCChHHHHHHHhCCchHHH-HHHhhcCCHHHHHHHHHHHH
Q 036199 608 AVAILLCLCSQRDQYCKLVMNEGVIPSL-VKISVYGNDKAKVSALELRR 655 (710)
Q Consensus 608 A~~aL~~Lc~~~~~~~~~v~~~G~v~~L-v~L~~~gt~~~k~kA~~LL~ 655 (710)
++.+|..+. .. .++..+ ..++...++.+++.+..+.+
T Consensus 395 VL~TL~tfL--~~---------~~LRLIFQNILLE~neeIl~lS~~VWk 432 (800)
T 3oc3_A 395 ILNMVKNLS--EE---------SIDFLVAEVVLIEEKDEIREMAIKLLK 432 (800)
T ss_dssp HHHHTTTCC--CH---------HHHHHHHHHHHHCSCHHHHHHHHHHHH
T ss_pred HHHHHHHHH--hh---------hHHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence 999998777 11 123333 34577788888888887775
|
| >4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=93.67 E-value=0.43 Score=48.57 Aligned_cols=179 Identities=12% Similarity=0.153 Sum_probs=107.0
Q ss_pred hhhcCCCHHHHHHHHHHHHHHHccCcccc--h-hcc-cCCcHHHHHHHhhccccCCCHHHHHHHHHHHHHHhccCCCCC-
Q 036199 388 SRLTELNWDCQCKVIEDYETRLEHDNQVS--H-SLS-STNFVEPLIRFLRDARDLHDSRAQRIGCRLLLAFVSKNRSGI- 462 (710)
Q Consensus 388 ~~L~s~~~e~q~~Al~~L~~Lak~~~~~r--~-~I~-~~G~I~~LV~lL~s~~~~~d~~~q~~A~~~L~nL~~~~~~k~- 462 (710)
.+|.+.+|..+.+|+++|..+........ . .+. -...++.+-..+.. .+..++..++.+|..++.......
T Consensus 16 e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~D----sN~~v~~~al~~l~~~~~~~~~~~~ 91 (278)
T 4ffb_C 16 ERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITD----SNVVAQEQAIVALNSLIDAFASSSL 91 (278)
T ss_dssp HHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTC----SSHHHHHHHHHHHHHHHTTCC---C
T ss_pred HhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhcc----chHHHHHHHHHHHHHHHHHhhhhhc
Confidence 67888999999999999988775433211 0 111 12334555556654 789999999999988865321110
Q ss_pred -----ccccccchHHHHH-HhccCcH--HHHHHHHHHHhccCchhhHHHhhhCcHHHHHHhhcCCCHHHHHHHHHHHHHh
Q 036199 463 -----PYLNEDLFSLLAS-FLHSAAA--TEETLAILVALSSYAYFISKIVASGALASILNMLDSPNGKFQELAIKILHNL 534 (710)
Q Consensus 463 -----~i~~~gaI~~LV~-lL~s~~~--~~~Aa~~L~~Ls~~~~nk~~I~~~GaI~~LV~LL~~~~~~~~~~A~~aL~nL 534 (710)
...-...++.|+. .|.++.. ...|..++..+........ ..++.++..+.+.++.++..++..|..+
T Consensus 92 ~~~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~~~-----~~~e~l~~~l~~Knpkv~~~~l~~l~~~ 166 (278)
T 4ffb_C 92 KNAHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTSIT-----QSVELVIPFFEKKLPKLIAAAANCVYEL 166 (278)
T ss_dssp CHHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSSSH-----HHHHHHGGGGGCSCHHHHHHHHHHHHHH
T ss_pred ccchhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCcHH-----HHHHHHHHHHhccCHHHHHHHHHHHHHH
Confidence 0112345666665 3555543 2456666655542221111 1356677788899999999999999887
Q ss_pred ccCccccc---ccccccchhchHHhhcC--chHHHHHHHHHHHHhc
Q 036199 535 SSDVDIQS---HIAPSEFLPKLVPFLKD--ATLAVSCLVILKNMCN 575 (710)
Q Consensus 535 s~~~en~~---~iv~aG~V~~Lv~lL~~--~~~~~~al~iL~nLa~ 575 (710)
...-..+. ...-..+++.+..+|.+ +++++.|..++..+-.
T Consensus 167 l~~fg~~~~~~k~~l~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~ 212 (278)
T 4ffb_C 167 MAAFGLTNVNVQTFLPELLKHVPQLAGHGDRNVRSQTMNLIVEIYK 212 (278)
T ss_dssp HHHHTTTTCCHHHHHHHHGGGHHHHHTCSSHHHHHHHHHHHHHHHT
T ss_pred HHHhCCCcCCchhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHH
Confidence 64211110 00112355667777754 5788888888877765
|
| >3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus} | Back alignment and structure |
|---|
Probab=93.54 E-value=0.28 Score=52.24 Aligned_cols=201 Identities=13% Similarity=0.031 Sum_probs=96.4
Q ss_pred hhhcCCCHHHHHHHHHHHHHHHccCcccchhcccCCcHHHHHHHhhccccCCCHHHHHHHHHHHHHHhccCCCCCccccc
Q 036199 388 SRLTELNWDCQCKVIEDYETRLEHDNQVSHSLSSTNFVEPLIRFLRDARDLHDSRAQRIGCRLLLAFVSKNRSGIPYLNE 467 (710)
Q Consensus 388 ~~L~s~~~e~q~~Al~~L~~Lak~~~~~r~~I~~~G~I~~LV~lL~s~~~~~d~~~q~~A~~~L~nL~~~~~~k~~i~~~ 467 (710)
.-|.+.++.++..|+-....+...+++.. .++++.+-+++.+ .++.++-+|+.+|..+..++ .
T Consensus 146 ~~L~d~~pyVRk~A~l~~~kL~~~~pe~v-----~~~~~~l~~ll~d----~n~~V~~~Al~lL~ei~~~d--------~ 208 (355)
T 3tjz_B 146 QAIVDKVPSVSSSALVSSLHLLKCSFDVV-----KRWVNEAQEAASS----DNIMVQYHALGLLYHVRKND--------R 208 (355)
T ss_dssp HHHTCSSHHHHHHHHHHHHHHTTTCHHHH-----HTTHHHHHHHTTC----SSHHHHHHHHHHHHHHHTTC--------H
T ss_pred HHcCCCCHHHHHHHHHHHHHHhccCHHHH-----HHHHHHHHHHhcC----CCccHHHHHHHHHHHHHhhc--------h
Confidence 45667789999999998888887777632 2688888888876 78999999999999886543 2
Q ss_pred cchHHHHHHhccCcH-HHHH-HHHHHHhccCc-hhhHHHhhhCcHHHHHHhhcCCCHHHHHHHHHHHHHhccCccccccc
Q 036199 468 DLFSLLASFLHSAAA-TEET-LAILVALSSYA-YFISKIVASGALASILNMLDSPNGKFQELAIKILHNLSSDVDIQSHI 544 (710)
Q Consensus 468 gaI~~LV~lL~s~~~-~~~A-a~~L~~Ls~~~-~nk~~I~~~GaI~~LV~LL~~~~~~~~~~A~~aL~nLs~~~en~~~i 544 (710)
.++..|+.-|..+.. .+-+ +..|..++..- ++ ..-.....++.|..+|++.++.+.-.|+.+|..|...+..
T Consensus 209 ~a~~kLv~~l~~~~l~~~~~q~~llr~l~~~~~~d-~~~~~~~~~~~l~~~L~~~~~aVvyEa~k~I~~l~~~~~~---- 283 (355)
T 3tjz_B 209 LAVSKMISKFTRHGLKSPFAYCMMIRVASRQLEDE-DGSRDSPLFDFIESCLRNKHEMVVYEAASAIVNLPGCSAK---- 283 (355)
T ss_dssp HHHHHHHHHHHSSCCSCHHHHHHHHHHHTCC------------------CCCCCSSHHHHHHHHHHHTC-----------
T ss_pred HHHHHHHHHHhcCCCcChHHHHHHHHHHHHhcccc-chhhHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCHH----
Confidence 266777777765421 1222 23333333211 10 0001234567777888899999999999999998753322
Q ss_pred ccccchhchHHhhc--CchHHHHHHHHHHHHhcCcchHHHHHhhcCChHHHHHHhhcCCHHHHHHHHHHHHHH
Q 036199 545 APSEFLPKLVPFLK--DATLAVSCLVILKNMCNTEHARVCVVETSGCLPSVAELLEIGSEEDQEHAVAILLCL 615 (710)
Q Consensus 545 v~aG~V~~Lv~lL~--~~~~~~~al~iL~nLa~~~e~r~~i~~~~g~I~~Lv~lL~~~s~~~ke~A~~aL~~L 615 (710)
.-.-++..|..+|. +++++--|+..|..++.... .+++ .+-..+..++..++......|+..|+.-
T Consensus 284 ~~~~a~~~L~~fLss~d~niryvaLr~L~~l~~~~P---~~v~--~~n~~ie~li~d~n~sI~t~Aittllkt 351 (355)
T 3tjz_B 284 ELAPAVSVLQLFCSSPKAALRYAAVRTLNKVAMKHP---SAVT--ACNLDLENLVTDANRSIATLAITTLLKT 351 (355)
T ss_dssp ----CCCTHHHHHHSSSSSSHHHHHHCC---------------------------------------------
T ss_pred HHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHCc---HHHH--HHHHHHHHHccCCcHhHHHHHHHHhhhc
Confidence 12455777888884 46777777777777766322 2222 2345667778888888888888777654
|
| >3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus} | Back alignment and structure |
|---|
Probab=93.35 E-value=0.059 Score=46.08 Aligned_cols=46 Identities=13% Similarity=0.048 Sum_probs=37.4
Q ss_pred cccCCccccCCc-eecCCCCccchhhHHHHhhhCCCCCCCCCCccCC
Q 036199 270 KCPLSLRLMYDP-VVIESGQTFERMWIQKWFEEGNHTCPKTKMKLVC 315 (710)
Q Consensus 270 ~CPI~~~~m~DP-V~~~~G~ty~r~~I~~w~~~g~~~cP~t~~~l~~ 315 (710)
.||+|.-....= -+++|+|.||-.|+..|..++..+||.|+.++..
T Consensus 3 fC~~C~~Pi~iygRmIPCkHvFCydCa~~~~~~~~k~Cp~C~~~V~r 49 (101)
T 3vk6_A 3 FCDKCGLPIKVYGRMIPCKHVFCYDCAILHEKKGDKMCPGCSDPVQR 49 (101)
T ss_dssp BCTTTCSBCSEEEEEETTCCEEEHHHHHHHHHTTCCBCTTTCCBCSE
T ss_pred ecCccCCCeEEEeeeccccccHHHHHHHHHHhccCCCCcCcCCeeee
Confidence 477777655443 3579999999999999998889999999987665
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A | Back alignment and structure |
|---|
Probab=93.22 E-value=4.6 Score=48.57 Aligned_cols=216 Identities=12% Similarity=0.127 Sum_probs=136.2
Q ss_pred HHHHHHHHHHHHHhccCCCCCccccccchHHHHHHhccCcHHHHHHHHHHHhccCchhhHHH--hhhCcHHHHHHhhcCC
Q 036199 442 RAQRIGCRLLLAFVSKNRSGIPYLNEDLFSLLASFLHSAAATEETLAILVALSSYAYFISKI--VASGALASILNMLDSP 519 (710)
Q Consensus 442 ~~q~~A~~~L~nL~~~~~~k~~i~~~gaI~~LV~lL~s~~~~~~Aa~~L~~Ls~~~~nk~~I--~~~GaI~~LV~LL~~~ 519 (710)
.....|+..|.++..+... ...+..+.+..|.+.+.+....+.|+.++..|+........+ .-.+.+|.+++.+.+.
T Consensus 29 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~k~~~~~a~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~dk 107 (986)
T 2iw3_A 29 DNRHEIASEVASFLNGNII-EHDVPEHFFGELAKGIKDKKTAANAMQAVAHIANQSNLSPSVEPYIVQLVPAICTNAGNK 107 (986)
T ss_dssp TTHHHHHHHHHHHHTSSCS-SSSCCHHHHHHHHHHHTSHHHHHHHHHHHHHHTCTTTCCTTTHHHHHTTHHHHHHHTTCS
T ss_pred hHHHHHHHHHHHHHhcccc-ccccchhHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCCcccchHHHHHHHHHHhcCC
Confidence 3345666667776543311 222345788888888876543378888888888443221111 1136788888888877
Q ss_pred CHHHHHHHHHHHHHhcc-CcccccccccccchhchHHhhcCc-hH--HHHHHHHHHHHhcCcchHHHHHh-hcCChHHHH
Q 036199 520 NGKFQELAIKILHNLSS-DVDIQSHIAPSEFLPKLVPFLKDA-TL--AVSCLVILKNMCNTEHARVCVVE-TSGCLPSVA 594 (710)
Q Consensus 520 ~~~~~~~A~~aL~nLs~-~~en~~~iv~aG~V~~Lv~lL~~~-~~--~~~al~iL~nLa~~~e~r~~i~~-~~g~I~~Lv 594 (710)
...++..|..|+..+.. .+.+. + ..++|.|+..|.+. .+ ...|+.++..|+... ...+.. -...||.+-
T Consensus 108 ~~~v~~aa~~~~~~~~~~~~~~a--~--~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~--~~~~~~~~~~~~p~~~ 181 (986)
T 2iw3_A 108 DKEIQSVASETLISIVNAVNPVA--I--KALLPHLTNAIVETNKWQEKIAILAAFSAMVDAA--KDQVALRMPELIPVLS 181 (986)
T ss_dssp SHHHHHHHHHHHHHHHHHSCGGG--H--HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHhCCHHH--H--HHHHHHHHHHhccccchHHHHHHHHHHHHHHHHh--HHHHHHhccchhcchH
Confidence 78888877777766653 11111 1 56678888888443 45 556788888888633 233322 145788888
Q ss_pred HHhhcCCHHHHHHHHHHHHHHhcCC--h-------HHHHHHHh----------CCc---------------hHHHHHHhh
Q 036199 595 ELLEIGSEEDQEHAVAILLCLCSQR--D-------QYCKLVMN----------EGV---------------IPSLVKISV 640 (710)
Q Consensus 595 ~lL~~~s~~~ke~A~~aL~~Lc~~~--~-------~~~~~v~~----------~G~---------------v~~Lv~L~~ 640 (710)
+.+-...++++..|..++..+|.-- . .-...+.+ .+. +|.|..=+.
T Consensus 182 ~~~~d~k~~v~~~~~~~~~~~~~~~~n~d~~~~~~~~~~~~~~p~~~~~~~~~l~~~tfv~~v~~~~l~~~~p~l~r~l~ 261 (986)
T 2iw3_A 182 ETMWDTKKEVKAAATAAMTKATETVDNKDIERFIPSLIQCIADPTEVPETVHLLGATTFVAEVTPATLSIMVPLLSRGLN 261 (986)
T ss_dssp HHTTCSSHHHHHHHHHHHHHHGGGCCCTTTGGGHHHHHHHHHCTTHHHHHHHHHTTCCCCSCCCHHHHHHHHHHHHHHHT
T ss_pred hhcccCcHHHHHHHHHHHHHHHhcCCCcchhhhHHHHHHHhcChhhhHHHHHHhhcCeeEeeecchhHHHHHHHHHhhhc
Confidence 8888889999999999999998521 0 11111221 111 333333355
Q ss_pred cCCHHHHHHHHHHHHHhhhccCCc
Q 036199 641 YGNDKAKVSALELRRLLRDVAYSV 664 (710)
Q Consensus 641 ~gt~~~k~kA~~LL~~l~~~~~~~ 664 (710)
..+...|+++.-++.+|.+--+..
T Consensus 262 ~~~~~~~r~~~~~~~n~~~lv~~~ 285 (986)
T 2iw3_A 262 ERETGIKRKSAVIIDNMCKLVEDP 285 (986)
T ss_dssp SSSHHHHHHHHHHHHHHHTTCCCH
T ss_pred cCcchhheeeEEEEcchhhhcCCH
Confidence 668888999999999998876654
|
| >3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=93.00 E-value=0.057 Score=57.29 Aligned_cols=63 Identities=17% Similarity=0.417 Sum_probs=52.4
Q ss_pred cccccCCccccCCceec-CCCCc--cchhhHHHHhh-hCCCCCCCCCCccCCCCCcccHHHHHHHHH
Q 036199 268 VFKCPLSLRLMYDPVVI-ESGQT--FERMWIQKWFE-EGNHTCPKTKMKLVCQSLTPNTAMKDLISK 330 (710)
Q Consensus 268 ~f~CPI~~~~m~DPV~~-~~G~t--y~r~~I~~w~~-~g~~~cP~t~~~l~~~~l~pN~~l~~~i~~ 330 (710)
.+.|||+...|..||-- .|.|. ||...+..... .+.-.||+|++.+...+|+.+..+...+.+
T Consensus 249 SL~CPlS~~ri~~PvRg~~C~HlQCFDl~sfL~~~~~~~~W~CPIC~k~~~~~dL~ID~~~~~IL~~ 315 (371)
T 3i2d_A 249 SLQCPISYTRMKYPSKSINCKHLQCFDALWFLHSQLQIPTWQCPVCQIDIALENLAISEFVDDILQN 315 (371)
T ss_dssp ESBCTTTSSBCSSEEEETTCCSSCCEEHHHHHHHHHHSCCCBCTTTCCBCCGGGEEEBHHHHHHHTT
T ss_pred eecCCCccccccccCcCCcCCCcceECHHHHHHHhhcCCceeCCCCCcccCHHHeeEcHHHHHHHHh
Confidence 48899999999999974 89886 88888777654 456779999999999999999888777653
|
| >2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=92.86 E-value=4.1 Score=39.07 Aligned_cols=171 Identities=15% Similarity=0.283 Sum_probs=115.8
Q ss_pred cccchHHHHHHhccCc--HHHHHHHHHHHhccC-chhhHHHhhhCcHHHHHHhh-cCCCHHHHHHHHHHHHHhccCcccc
Q 036199 466 NEDLFSLLASFLHSAA--ATEETLAILVALSSY-AYFISKIVASGALASILNML-DSPNGKFQELAIKILHNLSSDVDIQ 541 (710)
Q Consensus 466 ~~gaI~~LV~lL~s~~--~~~~Aa~~L~~Ls~~-~~nk~~I~~~GaI~~LV~LL-~~~~~~~~~~A~~aL~nLs~~~en~ 541 (710)
+...+..++.+|+..- .+.||..++..++.. ++.-. -.+..|+-|+ .+.........+.++..++.
T Consensus 30 d~~~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~~~el~e-----pl~~kL~vm~~ksEaIpltqeIa~a~G~la~----- 99 (253)
T 2db0_A 30 DESVLKKLIELLDDDLWTVVKNAISIIMVIAKTREDLYE-----PMLKKLFSLLKKSEAIPLTQEIAKAFGQMAK----- 99 (253)
T ss_dssp CHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCGGGHH-----HHHHHHHHHHHHCCSHHHHHHHHHHHHHHHH-----
T ss_pred hHHHHHHHHHHhccHHHHHHHhHHHHHHHHHHHhHHHHH-----HHHHHHHHHHhhcccCchHHHHHHHHhHHHH-----
Confidence 4567888999998876 457999999888742 22111 1234444554 46667776667778877773
Q ss_pred cccccccchhchHHhh------cCchHHHHHHHHHHHHhc-CcchHHHHHhhcCChHHHHHHhhcCCHHHHHHHHHHHHH
Q 036199 542 SHIAPSEFLPKLVPFL------KDATLAVSCLVILKNMCN-TEHARVCVVETSGCLPSVAELLEIGSEEDQEHAVAILLC 614 (710)
Q Consensus 542 ~~iv~aG~V~~Lv~lL------~~~~~~~~al~iL~nLa~-~~e~r~~i~~~~g~I~~Lv~lL~~~s~~~ke~A~~aL~~ 614 (710)
++...|.++|.+| .++.+.-....+|..++. +|+--..++ .-+..++.+.+...|-.|+..+..
T Consensus 100 ---i~Pe~v~~vVp~lfanyrigd~kikIn~~yaLeeIaranP~l~~~v~------rdi~smltskd~~Dkl~aLnFi~a 170 (253)
T 2db0_A 100 ---EKPELVKSMIPVLFANYRIGDEKTKINVSYALEEIAKANPMLMASIV------RDFMSMLSSKNREDKLTALNFIEA 170 (253)
T ss_dssp ---HCHHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHCHHHHHHHH------HHHHHHTSCSSHHHHHHHHHHHHT
T ss_pred ---hCHHHHHhhHHHHHHHHhcCCccceecHHHHHHHHHHhChHHHHHHH------HHHHHHhcCCChHHHHHHHHHHHH
Confidence 2233444555554 456666667777887776 565544444 456667777788888888888877
Q ss_pred HhcCChHHHHHHHhCCchHHHHHHhhcCCHHHHHHHHHHHHHhhhc
Q 036199 615 LCSQRDQYCKLVMNEGVIPSLVKISVYGNDKAKVSALELRRLLRDV 660 (710)
Q Consensus 615 Lc~~~~~~~~~v~~~G~v~~Lv~L~~~gt~~~k~kA~~LL~~l~~~ 660 (710)
+.-+..++.. -.+|.|..|+.+++.-+|..|...|-++...
T Consensus 171 lGen~~~yv~-----PfLprL~aLL~D~deiVRaSaVEtL~~lA~~ 211 (253)
T 2db0_A 171 MGENSFKYVN-----PFLPRIINLLHDGDEIVRASAVEALVHLATL 211 (253)
T ss_dssp CCTTTHHHHG-----GGHHHHHGGGGCSSHHHHHHHHHHHHHHHTS
T ss_pred HhccCccccC-----cchHHHHHHHcCcchhhhHHHHHHHHHHHHc
Confidence 7766654332 3468999999999999999999998887654
|
| >2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=92.61 E-value=0.056 Score=46.56 Aligned_cols=33 Identities=12% Similarity=0.145 Sum_probs=29.0
Q ss_pred CcccccCCcc-ccCCcee--cCCCCccchhhHHHHh
Q 036199 267 EVFKCPLSLR-LMYDPVV--IESGQTFERMWIQKWF 299 (710)
Q Consensus 267 ~~f~CPI~~~-~m~DPV~--~~~G~ty~r~~I~~w~ 299 (710)
+++.|+||.+ ...+||. +.||++||+.|++.|.
T Consensus 2 ee~~C~~C~~~~~~~av~~C~~C~~~~C~~Cl~~~h 37 (101)
T 2jun_A 2 EKVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKATH 37 (101)
T ss_dssp CCCBCTTCCSSSCCBCCEEETTTTEEECHHHHHHHS
T ss_pred CCCCCcCCCCCCCCCceEECCcCChHHhHHHCHHHh
Confidence 4678999996 4899999 9999999999999943
|
| >1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A | Back alignment and structure |
|---|
Probab=92.43 E-value=2.9 Score=50.24 Aligned_cols=216 Identities=6% Similarity=0.060 Sum_probs=119.8
Q ss_pred CCHHHHHHHHHHHHHHhccCCCCCccccc-----cchHHHHH----HhccC---cH--HHHHHHHHHHhccCchhhHHHh
Q 036199 439 HDSRAQRIGCRLLLAFVSKNRSGIPYLNE-----DLFSLLAS----FLHSA---AA--TEETLAILVALSSYAYFISKIV 504 (710)
Q Consensus 439 ~d~~~q~~A~~~L~nL~~~~~~k~~i~~~-----gaI~~LV~----lL~s~---~~--~~~Aa~~L~~Ls~~~~nk~~I~ 504 (710)
.+...++.|+.++..++............ ...+.++. .|.++ .. +..|+++|..++..- ....
T Consensus 417 ~~w~~reaal~algaia~~~~~~~~~~~~~~~~~~l~~~l~~~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~~-~~~~-- 493 (960)
T 1wa5_C 417 KNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQL-TKAQ-- 493 (960)
T ss_dssp -CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHHHHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGS-CHHH--
T ss_pred hhHHHHHHHHHHHHHHHHHhccccCCcccccccccHHHHHHHHhHHHhcCCCCCCceehHHHHHHHHHHHhhC-CHHH--
Confidence 45678888888888887542211111111 33343333 34544 33 357888888877532 1111
Q ss_pred hhCcHHHHHHhhcCCCHHHHHHHHHHHHHhccCcc---------ccccccc--ccchhchHHhhcCc-----h--HHHHH
Q 036199 505 ASGALASILNMLDSPNGKFQELAIKILHNLSSDVD---------IQSHIAP--SEFLPKLVPFLKDA-----T--LAVSC 566 (710)
Q Consensus 505 ~~GaI~~LV~LL~~~~~~~~~~A~~aL~nLs~~~e---------n~~~iv~--aG~V~~Lv~lL~~~-----~--~~~~a 566 (710)
-...++.++..|.+.++.++..|+.||.+++...+ .+..+.. ...++.|+.++... . ..+.+
T Consensus 494 l~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~~~~~~~~~~~~~~~~l~p~l~~ll~~L~~ll~~~~~~~~~~~~~e~l 573 (960)
T 1wa5_C 494 LIELMPILATFLQTDEYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNSTEILLKNLIALILKHGSSPEKLAENEFL 573 (960)
T ss_dssp HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTTTHHHHHHHHHHHHHTTCCCHHHHTSCHHH
T ss_pred HHHHHHHHHHHhCCCChhHHHHHHHHHHHHHhcccccccccccccHHHhhhhHHHHHHHHHHHHHhccCCCCcccccHHH
Confidence 23468889998888889999999999999987422 1222221 23444444555442 1 23455
Q ss_pred HHHHHHHhcC--cchHHHHHhhcCChHHHHHHhh----c-CCHHHHHHHHHHHHHHhcCChHHHHHHHhCCchHHHHHHh
Q 036199 567 LVILKNMCNT--EHARVCVVETSGCLPSVAELLE----I-GSEEDQEHAVAILLCLCSQRDQYCKLVMNEGVIPSLVKIS 639 (710)
Q Consensus 567 l~iL~nLa~~--~e~r~~i~~~~g~I~~Lv~lL~----~-~s~~~ke~A~~aL~~Lc~~~~~~~~~v~~~G~v~~Lv~L~ 639 (710)
+.+|..++.. ++-.. ... ..++.|+..+. + .++.....++.+|..++.........-...-++|.+..++
T Consensus 574 ~~al~~vv~~~~~~~~p-~~~--~l~~~L~~~l~~~~~~~~~~~~~~~~~e~l~~l~~~~~~~~~~~~~~~~~p~~~~iL 650 (960)
T 1wa5_C 574 MRSIFRVLQTSEDSIQP-LFP--QLLAQFIEIVTIMAKNPSNPRFTHYTFESIGAILNYTQRQNLPLLVDSMMPTFLTVF 650 (960)
T ss_dssp HHHHHHHHHHHTTTTGG-GHH--HHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhh-HHH--HHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHH
Confidence 6666655441 11111 111 13344444443 2 3566666778888777765221122334445678888887
Q ss_pred hcCCHHHHHHHHHHHHHhhhc
Q 036199 640 VYGNDKAKVSALELRRLLRDV 660 (710)
Q Consensus 640 ~~gt~~~k~kA~~LL~~l~~~ 660 (710)
.+......+.+..++..+-+.
T Consensus 651 ~~~~~~~~~~~~~i~~~l~~~ 671 (960)
T 1wa5_C 651 SEDIQEFIPYVFQIIAFVVEQ 671 (960)
T ss_dssp HTTCTTTHHHHHHHHHHHHHH
T ss_pred HhhhHhhHHHHHHHHHHHHHh
Confidence 776555666677776655544
|
| >4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B | Back alignment and structure |
|---|
Probab=90.95 E-value=0.17 Score=53.53 Aligned_cols=64 Identities=17% Similarity=0.300 Sum_probs=53.1
Q ss_pred CcccccCCccccCCcee-cCCCCc--cchhhHHHHhh-hCCCCCCCCCCccCCCCCcccHHHHHHHHH
Q 036199 267 EVFKCPLSLRLMYDPVV-IESGQT--FERMWIQKWFE-EGNHTCPKTKMKLVCQSLTPNTAMKDLISK 330 (710)
Q Consensus 267 ~~f~CPI~~~~m~DPV~-~~~G~t--y~r~~I~~w~~-~g~~~cP~t~~~l~~~~l~pN~~l~~~i~~ 330 (710)
-.+.|||+...|..|+- ..|.|. ||...+..... .+.-.||+|++.+...+|+.+..+...+.+
T Consensus 214 vSL~CPlS~~ri~~P~Rg~~C~HlqCFDl~sfL~~~~~~~~W~CPiC~k~~~~~dL~ID~~~~~IL~~ 281 (360)
T 4fo9_A 214 VSLMCPLGKMRLTIPCRAVTCTHLQCFDAALYLQMNEKKPTWICPVCDKKAAYESLILDGLFMEILND 281 (360)
T ss_dssp EESBCTTTCSBCSSEEEETTCCCCCCEEHHHHHHHHHHSCCCBCTTTCSBCCGGGEEEBHHHHHHHTT
T ss_pred EeeeCCCccceeccCCcCCCCCCCccCCHHHHHHHHhhCCCeECCCCCcccCHHHeEEcHHHHHHHHh
Confidence 35889999999999997 488876 99888777655 456679999999999999998888777653
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=90.43 E-value=28 Score=41.55 Aligned_cols=224 Identities=9% Similarity=-0.000 Sum_probs=130.0
Q ss_pred CCCHHHHHHHHHHHHHHHccCcccchhcccCCcHHHHHHHhhccc-cCC---CHHHHHHHHHHHHHHhccCCCCCccccc
Q 036199 392 ELNWDCQCKVIEDYETRLEHDNQVSHSLSSTNFVEPLIRFLRDAR-DLH---DSRAQRIGCRLLLAFVSKNRSGIPYLNE 467 (710)
Q Consensus 392 s~~~e~q~~Al~~L~~Lak~~~~~r~~I~~~G~I~~LV~lL~s~~-~~~---d~~~q~~A~~~L~nL~~~~~~k~~i~~~ 467 (710)
+++..++..|+..|......... .++..|...|.+.. ..+ ...++..|+..|....-.. .+.
T Consensus 406 s~~~~ik~GAllaLGli~ag~~~--------~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~GS------~~e 471 (963)
T 4ady_A 406 ASSRFIKGGSLYGLGLIYAGFGR--------DTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAMGS------ANI 471 (963)
T ss_dssp CSCHHHHHHHHHHHHHHTTTTTH--------HHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHSTTC------CCH
T ss_pred CCcHHHHHHHHHHHHHhcCCCcH--------HHHHHHHHHHcCccccccccccHHHHHHHHHHHHHHhcCC------CCH
Confidence 45667778888887766543221 15677788886521 001 1456666766666652222 134
Q ss_pred cchHHHHHHhccCcHH--HHHHHHHHHhccCchhhHHHhhhCcHHHHHHhh-cCCCHHHHHHHHHHHHHhccCccccccc
Q 036199 468 DLFSLLASFLHSAAAT--EETLAILVALSSYAYFISKIVASGALASILNML-DSPNGKFQELAIKILHNLSSDVDIQSHI 544 (710)
Q Consensus 468 gaI~~LV~lL~s~~~~--~~Aa~~L~~Ls~~~~nk~~I~~~GaI~~LV~LL-~~~~~~~~~~A~~aL~nLs~~~en~~~i 544 (710)
.+++.|..+|.+.+.. +.|+-+|..+-.... ...++..|+..+ .+.+..+++.++.+|..+...
T Consensus 472 ev~e~L~~~L~dd~~~~~~~AalALGli~vGTg------n~~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g------- 538 (963)
T 4ady_A 472 EVYEALKEVLYNDSATSGEAAALGMGLCMLGTG------KPEAIHDMFTYSQETQHGNITRGLAVGLALINYG------- 538 (963)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCC------CHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTT-------
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccC------CHHHHHHHHHHHhccCcHHHHHHHHHHHHhhhCC-------
Confidence 6788999999866542 334444433211111 123466677665 455678888888888877632
Q ss_pred ccccchhchHHhhc--CchHHHHHHHHHHHHhcCcchHHHHHhhcCChHHHHHHhh-cCCHHHHHHHHHHHHHHhcCChH
Q 036199 545 APSEFLPKLVPFLK--DATLAVSCLVILKNMCNTEHARVCVVETSGCLPSVAELLE-IGSEEDQEHAVAILLCLCSQRDQ 621 (710)
Q Consensus 545 v~aG~V~~Lv~lL~--~~~~~~~al~iL~nLa~~~e~r~~i~~~~g~I~~Lv~lL~-~~s~~~ke~A~~aL~~Lc~~~~~ 621 (710)
+...++.+++.|. ...+...+....-.++-...|- ...|..|+..+. ..+..+|..|+.+|..+..+++
T Consensus 539 -~~e~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn------~~aIq~LL~~~~~d~~d~VRraAViaLGlI~~g~~- 610 (963)
T 4ady_A 539 -RQELADDLITKMLASDESLLRYGGAFTIALAYAGTGN------NSAVKRLLHVAVSDSNDDVRRAAVIALGFVLLRDY- 610 (963)
T ss_dssp -CGGGGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCC------HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTSSSC-
T ss_pred -ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCC------HHHHHHHHHHhccCCcHHHHHHHHHHHHhhccCCH-
Confidence 3356778888873 2334444333333333322111 123455555544 4678889999999988776663
Q ss_pred HHHHHHhCCchHHHHH-HhhcCCHHHHHHHHHHHHHhh
Q 036199 622 YCKLVMNEGVIPSLVK-ISVYGNDKAKVSALELRRLLR 658 (710)
Q Consensus 622 ~~~~v~~~G~v~~Lv~-L~~~gt~~~k~kA~~LL~~l~ 658 (710)
..++.++. |+.++++.+|..|...|-++.
T Consensus 611 --------e~v~rlv~~L~~~~d~~VR~gAalALGli~ 640 (963)
T 4ady_A 611 --------TTVPRIVQLLSKSHNAHVRCGTAFALGIAC 640 (963)
T ss_dssp --------SSHHHHTTTGGGCSCHHHHHHHHHHHHHHT
T ss_pred --------HHHHHHHHHHHhcCCHHHHHHHHHHHHHhc
Confidence 23555655 456677888877777776664
|
| >2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=88.57 E-value=1.3 Score=44.54 Aligned_cols=168 Identities=21% Similarity=0.247 Sum_probs=119.7
Q ss_pred HHHHHHHHHHHhccCCCCCccccccchHHHHHHhccCcHH---H----HHHHHHHHhccCc--hhhHHHhhhCcHHHHHH
Q 036199 444 QRIGCRLLLAFVSKNRSGIPYLNEDLFSLLASFLHSAAAT---E----ETLAILVALSSYA--YFISKIVASGALASILN 514 (710)
Q Consensus 444 q~~A~~~L~nL~~~~~~k~~i~~~gaI~~LV~lL~s~~~~---~----~Aa~~L~~Ls~~~--~nk~~I~~~GaI~~LV~ 514 (710)
..+|..+|..+++|.+.|..++++...--|.-+|+..+.. | .+.+++..|.+.+ +.-..+...+.||..++
T Consensus 73 VcnaLaLlQcvAshpetr~~Fl~a~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~tEiiplCLr 152 (268)
T 2fv2_A 73 VCNALALLQCVASHPETRSAFLAAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCLR 152 (268)
T ss_dssp HHHHHHHHHHHHHCTTTHHHHHHTTGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTTHHHHHHH
T ss_pred HHHHHHHHHHHHcCcchhhHHHHccchHHhhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHHHHHHHhhhHHHHHHH
Confidence 3567777777889999999988998888888888766531 2 6888888888543 33334447899999999
Q ss_pred hhcCCCHHHHHHHHHHHHHhccCccccccccc-cc-------chhchHHhh-c--CchHHHHHHHHHHHHhcCcchHHHH
Q 036199 515 MLDSPNGKFQELAIKILHNLSSDVDIQSHIAP-SE-------FLPKLVPFL-K--DATLAVSCLVILKNMCNTEHARVCV 583 (710)
Q Consensus 515 LL~~~~~~~~~~A~~aL~nLs~~~en~~~iv~-aG-------~V~~Lv~lL-~--~~~~~~~al~iL~nLa~~~e~r~~i 583 (710)
.+..|+.-.|.-|.-++..+-.++.+-..+.. +. ++..+|.-+ . ++.+....+.+--.|+.++.+|.++
T Consensus 153 ime~GselSKtvAtfIlqKIL~dd~GL~YiC~t~eRF~av~~vL~~mV~~l~~~ps~RLLKhiircYlRLsdn~rar~aL 232 (268)
T 2fv2_A 153 IMESGSELSKTVATFILQKILLDDTGLAYICQTYERFSHVAMILGKMVLQLSKEPSARLLKHVVRCYLRLSDNPRAREAL 232 (268)
T ss_dssp HHHHSCHHHHHHHHHHHHHHHHSHHHHHHHTSSHHHHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTSHHHHHHH
T ss_pred HHhhccHHHHHHHHHHHHHHhccchhHHHHHccHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCHHHHHHH
Confidence 99999999999999999999887776665543 22 222223222 2 3467888899999999999999988
Q ss_pred HhhcCChHH------HHHHhhcCCHHHHHHHHHHHHHH
Q 036199 584 VETSGCLPS------VAELLEIGSEEDQEHAVAILLCL 615 (710)
Q Consensus 584 ~~~~g~I~~------Lv~lL~~~s~~~ke~A~~aL~~L 615 (710)
... +|. +...+ .+++..+..-...|.++
T Consensus 233 ~~~---LP~~Lrd~tf~~~l-~~D~~~k~~l~qLl~n~ 266 (268)
T 2fv2_A 233 RQC---LPDQLKDTTFAQVL-KDDTTTKRWLAQLVKNL 266 (268)
T ss_dssp HHH---SCGGGTSSTTHHHH-TSCHHHHHHHHHHHHHS
T ss_pred HHh---CcHHhhChHHHHHH-hcCHHHHHHHHHHHHhc
Confidence 752 222 11222 35777777666666554
|
| >4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=88.54 E-value=17 Score=36.37 Aligned_cols=180 Identities=11% Similarity=0.065 Sum_probs=107.1
Q ss_pred HHHhhccccCCCHHHHHHHHHHHHHHhccCCC---CCc-cc-cccchHHHHHHhccCcHH--HHHHHHHHHhccC---c-
Q 036199 429 IRFLRDARDLHDSRAQRIGCRLLLAFVSKNRS---GIP-YL-NEDLFSLLASFLHSAAAT--EETLAILVALSSY---A- 497 (710)
Q Consensus 429 V~lL~s~~~~~d~~~q~~A~~~L~nL~~~~~~---k~~-i~-~~gaI~~LV~lL~s~~~~--~~Aa~~L~~Ls~~---~- 497 (710)
-.-|.+ .+-..+..|+..|..+...... ... +. -....+.+-..+.+.+.. ..++.+|..+... .
T Consensus 15 ~e~l~s----k~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~ 90 (278)
T 4ffb_C 15 EERLTY----KLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVALNSLIDAFASSS 90 (278)
T ss_dssp HHHTTC----SSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC---
T ss_pred HHhccc----CcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhh
Confidence 344555 6788888999988887543211 111 01 123345566677766653 5677777655431 1
Q ss_pred --hhhHHHhhhCcHHHHHH-hhcCCCHHHHHHHHHHHHHhccCcccccccccccchhchHHhhc--CchHHHHHHHHHHH
Q 036199 498 --YFISKIVASGALASILN-MLDSPNGKFQELAIKILHNLSSDVDIQSHIAPSEFLPKLVPFLK--DATLAVSCLVILKN 572 (710)
Q Consensus 498 --~nk~~I~~~GaI~~LV~-LL~~~~~~~~~~A~~aL~nLs~~~en~~~iv~aG~V~~Lv~lL~--~~~~~~~al~iL~n 572 (710)
...........+|.|++ .|.+..+.++..|..+|..+........ -+++.++..+. ++.+...++..|..
T Consensus 91 ~~~~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~~~-----~~~e~l~~~l~~Knpkv~~~~l~~l~~ 165 (278)
T 4ffb_C 91 LKNAHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTSIT-----QSVELVIPFFEKKLPKLIAAAANCVYE 165 (278)
T ss_dssp CCHHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSSSH-----HHHHHHGGGGGCSCHHHHHHHHHHHHH
T ss_pred cccchhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCcHH-----HHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence 11122223567888886 4788889999999888887763222111 12344555553 46677777777777
Q ss_pred HhcC--cc--hHHHHHhhcCChHHHHHHhhcCCHHHHHHHHHHHHHHhcCC
Q 036199 573 MCNT--EH--ARVCVVETSGCLPSVAELLEIGSEEDQEHAVAILLCLCSQR 619 (710)
Q Consensus 573 La~~--~e--~r~~i~~~~g~I~~Lv~lL~~~s~~~ke~A~~aL~~Lc~~~ 619 (710)
+-.. .. .-..... ..++.+..++.+.++.+|+.|..++..+...-
T Consensus 166 ~l~~fg~~~~~~k~~l~--~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~~~ 214 (278)
T 4ffb_C 166 LMAAFGLTNVNVQTFLP--ELLKHVPQLAGHGDRNVRSQTMNLIVEIYKVT 214 (278)
T ss_dssp HHHHHTTTTCCHHHHHH--HHGGGHHHHHTCSSHHHHHHHHHHHHHHHTC-
T ss_pred HHHHhCCCcCCchhHHH--HHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHh
Confidence 6431 11 1111111 24567788888999999999999998887654
|
| >3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens} | Back alignment and structure |
|---|
Probab=87.34 E-value=2.7 Score=43.58 Aligned_cols=136 Identities=17% Similarity=0.141 Sum_probs=91.1
Q ss_pred CCHHHHHHHHHHHHHhccCcccccccccc--cchhchHHhhc--CchHHHHHHHHHHHHhcCc---chHHHHHhhcCChH
Q 036199 519 PNGKFQELAIKILHNLSSDVDIQSHIAPS--EFLPKLVPFLK--DATLAVSCLVILKNMCNTE---HARVCVVETSGCLP 591 (710)
Q Consensus 519 ~~~~~~~~A~~aL~nLs~~~en~~~iv~a--G~V~~Lv~lL~--~~~~~~~al~iL~nLa~~~---e~r~~i~~~~g~I~ 591 (710)
+.+..+-.++++++|+-.++..+..+... -+++.+...+. +..++..+..++.|+|..- ...... ..++.
T Consensus 160 ~~p~n~ml~lR~l~NlF~~~~g~~~l~~~~~~il~~~~~~~~~~nknl~iA~ATl~~NlAv~~~~~~~~~~~---~~ll~ 236 (304)
T 3ebb_A 160 GKPANQLLALRTFCNCFVGQAGQKLMMSQRESLMSHAIELKSGSNKNIHIALATLALNYSVCFHKDHNIEGK---AQCLS 236 (304)
T ss_dssp SCHHHHHHHHHHHHHGGGSHHHHHHHHHTHHHHHHHHHGGGSSCCHHHHHHHHHHHHHHHHHHHHSCCHHHH---HHHHH
T ss_pred CChHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhhcCCchHH---HHHHH
Confidence 45667889999999999988887766542 34444444443 3467778888888998721 111111 11334
Q ss_pred HHHHHhhc-CCHHHHHHHHHHHHHHhcCChHHHHHHHhCCchHHHHHHhhc-CCHHHHHHHHHHHHHh
Q 036199 592 SVAELLEI-GSEEDQEHAVAILLCLCSQRDQYCKLVMNEGVIPSLVKISVY-GNDKAKVSALELRRLL 657 (710)
Q Consensus 592 ~Lv~lL~~-~s~~~ke~A~~aL~~Lc~~~~~~~~~v~~~G~v~~Lv~L~~~-gt~~~k~kA~~LL~~l 657 (710)
.+..++.. .+.+..-.++.+|.+|...+.+..+.+..-|+-..+-.+... ...++.+.|+.+|.+|
T Consensus 237 ~l~~il~~~~d~EalyR~LvALGtL~~~~~~~~~lak~l~~~~~v~~~~~~~~~~kv~~~~~~~~~~l 304 (304)
T 3ebb_A 237 LISTILEVVQDLEATFRLLVALGTLISDDSNAVQLAKSLGVDSQIKKYSSVSEPAKVSECCRFILNLL 304 (304)
T ss_dssp HHHHHHTTCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHGGGGGGCCSSHHHHHHHHHHHTTC
T ss_pred HHHHHHhccCCHHHHHHHHHHHHHHHhCChhHHHHHHHcCHHHHHHHHHhCCCchhHHHHHHHHHHhC
Confidence 44445543 588888889999999998876666777677776665555443 5788889999888754
|
| >3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens} | Back alignment and structure |
|---|
Probab=87.24 E-value=0.51 Score=47.32 Aligned_cols=48 Identities=15% Similarity=0.284 Sum_probs=36.5
Q ss_pred ccccCCccccCCceec-CCCCccchhhHHHHhhh-CCCCCCCCCCccCCC
Q 036199 269 FKCPLSLRLMYDPVVI-ESGQTFERMWIQKWFEE-GNHTCPKTKMKLVCQ 316 (710)
Q Consensus 269 f~CPI~~~~m~DPV~~-~~G~ty~r~~I~~w~~~-g~~~cP~t~~~l~~~ 316 (710)
..|.||.++..-=+.- .||+.|-+.|+.+|+.. ++..||.|+.+.+..
T Consensus 181 ~~C~iC~~iv~~g~~C~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~~~ 230 (238)
T 3nw0_A 181 KICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHE 230 (238)
T ss_dssp CBCTTTCSBCSSCEECSSSCCEECHHHHHHHTTTCSSCBCTTTCCBCCSC
T ss_pred CcCcchhhHHhCCcccCccChHHHHHHHHHHHHhCCCCCCCCCCCCCCCC
Confidence 4588888777644333 38999999999999975 467899999876553
|
| >1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A* | Back alignment and structure |
|---|
Probab=86.59 E-value=16 Score=38.19 Aligned_cols=154 Identities=14% Similarity=0.137 Sum_probs=118.9
Q ss_pred HHhhhCcHHHHHHhhcCCCHHHHHHHHHHHHHhccCc-cccccc----c-cccchhchHHhhcCchHHHHHHHHHHHHhc
Q 036199 502 KIVASGALASILNMLDSPNGKFQELAIKILHNLSSDV-DIQSHI----A-PSEFLPKLVPFLKDATLAVSCLVILKNMCN 575 (710)
Q Consensus 502 ~I~~~GaI~~LV~LL~~~~~~~~~~A~~aL~nLs~~~-en~~~i----v-~aG~V~~Lv~lL~~~~~~~~al~iL~nLa~ 575 (710)
.|...+.+..|+..|..=+-+.+++++.+..+|.... +++... . .-.++..|+.--.++++.-.|-.+|+....
T Consensus 73 ei~~~dll~~Li~~l~~L~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~~peil~~L~~gYe~~diAl~~G~mLRecir 152 (341)
T 1upk_A 73 ELYNSGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGYESPEIALNCGIMLRECIR 152 (341)
T ss_dssp HHHHHSHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHGGGSTTTHHHHHHHHHHHHT
T ss_pred HHHHhCHHHHHHHhcccCCchhhccHHHHHHHHHhcccCCCCchhHHHHcCHHHHHHHHHhhccchhHhHHHHHHHHHHH
Confidence 4456789999999999999999999999999887643 333222 1 233444444444667888889999999999
Q ss_pred CcchHHHHHhhcCChHHHHHHhhcCCHHHHHHHHHHHHHHhcCChHHHHHHHhCC---chHHHHHHhhcCCHHHHHHHHH
Q 036199 576 TEHARVCVVETSGCLPSVAELLEIGSEEDQEHAVAILLCLCSQRDQYCKLVMNEG---VIPSLVKISVYGNDKAKVSALE 652 (710)
Q Consensus 576 ~~e~r~~i~~~~g~I~~Lv~lL~~~s~~~ke~A~~aL~~Lc~~~~~~~~~v~~~G---~v~~Lv~L~~~gt~~~k~kA~~ 652 (710)
++.-...|.. .+.+-.+.+.+..++=++...|...+..|-..........+... .+...-.|+.+++--+|+.+.+
T Consensus 153 ~e~la~~iL~-~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll~S~NYVTkRQSlK 231 (341)
T 1upk_A 153 HEPLAKIILW-SEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQSLK 231 (341)
T ss_dssp SHHHHHHHHH-SGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHHHHHH
T ss_pred hHHHHHHHhc-cHHHHHHHHHhcCCCchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHhcCCcchhHHHHHH
Confidence 9888888887 57788999999999999999999999888777655444555433 3566677899999999999999
Q ss_pred HHHH
Q 036199 653 LRRL 656 (710)
Q Consensus 653 LL~~ 656 (710)
||.-
T Consensus 232 LLge 235 (341)
T 1upk_A 232 LLGE 235 (341)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 9983
|
| >2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=86.35 E-value=2.7 Score=42.23 Aligned_cols=168 Identities=14% Similarity=0.159 Sum_probs=114.8
Q ss_pred HHHHHHHHhccCchhhHHHhhhCcHHHHHHhhcCCC-----HHHHHHHHHHHHHhcc--CcccccccccccchhchHHhh
Q 036199 485 ETLAILVALSSYAYFISKIVASGALASILNMLDSPN-----GKFQELAIKILHNLSS--DVDIQSHIAPSEFLPKLVPFL 557 (710)
Q Consensus 485 ~Aa~~L~~Ls~~~~nk~~I~~~GaI~~LV~LL~~~~-----~~~~~~A~~aL~nLs~--~~en~~~iv~aG~V~~Lv~lL 557 (710)
+|.+.|..++.+++.|..+.++...--|--.|+..+ +-.+-.+++++..|.. +++....+.+.++||..++.|
T Consensus 75 naLaLlQcvAshpetr~~Fl~a~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~tEiiplCLrim 154 (268)
T 2fv2_A 75 NALALLQCVASHPETRSAFLAAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCLRIM 154 (268)
T ss_dssp HHHHHHHHHHHCTTTHHHHHHTTGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTTHHHHHHHHH
T ss_pred HHHHHHHHHHcCcchhhHHHHccchHHhhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHHHHHHHhhhHHHHHHHHH
Confidence 788888899999999999999887655666664433 3566778888888885 344556677899999999999
Q ss_pred cCc--hHHHHHHHHHHHHhcCcchHHHHHhhcC-------ChHHHHH-HhhcCCHHHHHHHHHHHHHHhcCChHHHHHHH
Q 036199 558 KDA--TLAVSCLVILKNMCNTEHARVCVVETSG-------CLPSVAE-LLEIGSEEDQEHAVAILLCLCSQRDQYCKLVM 627 (710)
Q Consensus 558 ~~~--~~~~~al~iL~nLa~~~e~r~~i~~~~g-------~I~~Lv~-lL~~~s~~~ke~A~~aL~~Lc~~~~~~~~~v~ 627 (710)
..+ -...-|.-++..+-.++.|...+.++.. .+..+|. +.+..+++.-++.+.+-..|+.+. ..+..+.
T Consensus 155 e~GselSKtvAtfIlqKIL~dd~GL~YiC~t~eRF~av~~vL~~mV~~l~~~ps~RLLKhiircYlRLsdn~-rar~aL~ 233 (268)
T 2fv2_A 155 ESGSELSKTVATFILQKILLDDTGLAYICQTYERFSHVAMILGKMVLQLSKEPSARLLKHVVRCYLRLSDNP-RAREALR 233 (268)
T ss_dssp HHSCHHHHHHHHHHHHHHHHSHHHHHHHTSSHHHHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTSH-HHHHHHH
T ss_pred hhccHHHHHHHHHHHHHHhccchhHHHHHccHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCH-HHHHHHH
Confidence 543 3366677888888888888877765432 2223333 224579999999999999999887 4444433
Q ss_pred h-------CCchHHHHHHhhcCCHHHHHHHHHHHHHh
Q 036199 628 N-------EGVIPSLVKISVYGNDKAKVSALELRRLL 657 (710)
Q Consensus 628 ~-------~G~v~~Lv~L~~~gt~~~k~kA~~LL~~l 657 (710)
+ .|-+..++ .+++.+|+.=..|+..+
T Consensus 234 ~~LP~~Lrd~tf~~~l----~~D~~~k~~l~qLl~n~ 266 (268)
T 2fv2_A 234 QCLPDQLKDTTFAQVL----KDDTTTKRWLAQLVKNL 266 (268)
T ss_dssp HHSCGGGTSSTTHHHH----TSCHHHHHHHHHHHHHS
T ss_pred HhCcHHhhChHHHHHH----hcCHHHHHHHHHHHHhc
Confidence 2 22222222 34566666555555443
|
| >1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A | Back alignment and structure |
|---|
Probab=82.62 E-value=9.4 Score=45.76 Aligned_cols=218 Identities=12% Similarity=0.141 Sum_probs=121.1
Q ss_pred CCCHHHHHHHHHHHHHHHccCcccchhcc----cCCcHHHHHH----HhhccccCCCHHHHHHHHHHHHHHhccCCCCCc
Q 036199 392 ELNWDCQCKVIEDYETRLEHDNQVSHSLS----STNFVEPLIR----FLRDARDLHDSRAQRIGCRLLLAFVSKNRSGIP 463 (710)
Q Consensus 392 s~~~e~q~~Al~~L~~Lak~~~~~r~~I~----~~G~I~~LV~----lL~s~~~~~d~~~q~~A~~~L~nL~~~~~~k~~ 463 (710)
+.+|..+..|+..+..++........-+. .....+.++. .|.+.. ...+.++..|+.+|..++..- .+
T Consensus 416 ~~~w~~reaal~algaia~~~~~~~~~~~~~~~~~~l~~~l~~~v~p~l~~~~-~~~p~vr~~a~~~lg~~~~~~-~~-- 491 (960)
T 1wa5_C 416 SKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFFTKEIAPDLTSNN-IPHIILRVDAIKYIYTFRNQL-TK-- 491 (960)
T ss_dssp --CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHHHHHHTHHHHHCSS-CSCHHHHHHHHHHHHHTGGGS-CH--
T ss_pred chhHHHHHHHHHHHHHHHHHhccccCCcccccccccHHHHHHHHhHHHhcCCC-CCCceehHHHHHHHHHHHhhC-CH--
Confidence 45788888888888888764321111010 0033343333 344311 127889999999999986642 11
Q ss_pred cccccchHHHHHHhccCcH--HHHHHHHHHHhccCch---------hhHHHhh--hCcHHHHHHhhcCCC--H-H--HHH
Q 036199 464 YLNEDLFSLLASFLHSAAA--TEETLAILVALSSYAY---------FISKIVA--SGALASILNMLDSPN--G-K--FQE 525 (710)
Q Consensus 464 i~~~gaI~~LV~lL~s~~~--~~~Aa~~L~~Ls~~~~---------nk~~I~~--~GaI~~LV~LL~~~~--~-~--~~~ 525 (710)
-.-...++.++..|.+++. +..|+.+|.+++...+ .+..+.. ...+..|+.++.... + . ..+
T Consensus 492 ~~l~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~~~~~~~~~~~~~~~~l~p~l~~ll~~L~~ll~~~~~~~~~~~~~e 571 (960)
T 1wa5_C 492 AQLIELMPILATFLQTDEYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNSTEILLKNLIALILKHGSSPEKLAENE 571 (960)
T ss_dssp HHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTTTHHHHHHHHHHHHHTTCCCHHHHTSCH
T ss_pred HHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHhcccccccccccccHHHhhhhHHHHHHHHHHHHHhccCCCCcccccH
Confidence 1234577888888877654 3689999999886321 2344432 456777777776641 1 1 234
Q ss_pred HHHHHHHHhccC-cccccccccccchhchHHhh----c---CchHHHHHHHHHHHHhcC--cchHHHHHhhcCChHHHHH
Q 036199 526 LAIKILHNLSSD-VDIQSHIAPSEFLPKLVPFL----K---DATLAVSCLVILKNMCNT--EHARVCVVETSGCLPSVAE 595 (710)
Q Consensus 526 ~A~~aL~nLs~~-~en~~~iv~aG~V~~Lv~lL----~---~~~~~~~al~iL~nLa~~--~e~r~~i~~~~g~I~~Lv~ 595 (710)
.+..+|..+... .+..... -...++.|+..+ . ++.+...++.+|..++.. ++....+.+ ..+|.+..
T Consensus 572 ~l~~al~~vv~~~~~~~~p~-~~~l~~~L~~~l~~~~~~~~~~~~~~~~~e~l~~l~~~~~~~~~~~~~~--~~~p~~~~ 648 (960)
T 1wa5_C 572 FLMRSIFRVLQTSEDSIQPL-FPQLLAQFIEIVTIMAKNPSNPRFTHYTFESIGAILNYTQRQNLPLLVD--SMMPTFLT 648 (960)
T ss_dssp HHHHHHHHHHHHHTTTTGGG-HHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHTSCGGGHHHHHH--HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhhH-HHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCcchHHHHHH--HHHHHHHH
Confidence 556666555431 1211111 113444555544 1 224556677777777763 344444443 46788888
Q ss_pred HhhcCCHHHHHHHHHHHHHHh
Q 036199 596 LLEIGSEEDQEHAVAILLCLC 616 (710)
Q Consensus 596 lL~~~s~~~ke~A~~aL~~Lc 616 (710)
+|........+.+..++..+.
T Consensus 649 iL~~~~~~~~~~~~~i~~~l~ 669 (960)
T 1wa5_C 649 VFSEDIQEFIPYVFQIIAFVV 669 (960)
T ss_dssp HHHTTCTTTHHHHHHHHHHHH
T ss_pred HHHhhhHhhHHHHHHHHHHHH
Confidence 887655555666666655443
|
| >2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=81.72 E-value=5.1 Score=39.68 Aligned_cols=59 Identities=15% Similarity=0.136 Sum_probs=53.7
Q ss_pred hHHHHHHHHHHHHhcCcchHHHHHhhcCChHHHHHHhhcCCHHHHHHHHHHHHHHhcCC
Q 036199 561 TLAVSCLVILKNMCNTEHARVCVVETSGCLPSVAELLEIGSEEDQEHAVAILLCLCSQR 619 (710)
Q Consensus 561 ~~~~~al~iL~nLa~~~e~r~~i~~~~g~I~~Lv~lL~~~s~~~ke~A~~aL~~Lc~~~ 619 (710)
+....++.+|..|..+..|...+..++.+|..|+..|.+.++..+..|+.+|..+|..+
T Consensus 69 ~~~~~~l~CLkalmn~~~G~~~vl~~~~~i~~l~~~L~s~~~~~r~~~leLL~~lc~~~ 127 (233)
T 2f31_A 69 RNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILP 127 (233)
T ss_dssp HHHHHHHHHHHHHTSSHHHHHHHHTSSSHHHHHHTTCCTTSHHHHHHHHHHHHHHHTCS
T ss_pred HHHHHHHHHHHHHhCChHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHHHHHHhCC
Confidence 45778999999999999999999998899999999999999999999999999999765
|
| >3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens} | Back alignment and structure |
|---|
Probab=81.44 E-value=3.5 Score=42.72 Aligned_cols=128 Identities=13% Similarity=0.074 Sum_probs=80.2
Q ss_pred HHHHHHHHHhccCchhhHHHhh--hCcHHHHHHhhcCCCHHHHHHHHHHHHHhccCcccccccc-cccchhchHHhh---
Q 036199 484 EETLAILVALSSYAYFISKIVA--SGALASILNMLDSPNGKFQELAIKILHNLSSDVDIQSHIA-PSEFLPKLVPFL--- 557 (710)
Q Consensus 484 ~~Aa~~L~~Ls~~~~nk~~I~~--~GaI~~LV~LL~~~~~~~~~~A~~aL~nLs~~~en~~~iv-~aG~V~~Lv~lL--- 557 (710)
--+++++.|+-.++..+..+.. ...+..+...+.+.+..++..+++.++|++..--+....- ..-++..+..++
T Consensus 166 ml~lR~l~NlF~~~~g~~~l~~~~~~il~~~~~~~~~~nknl~iA~ATl~~NlAv~~~~~~~~~~~~~ll~~l~~il~~~ 245 (304)
T 3ebb_A 166 LLALRTFCNCFVGQAGQKLMMSQRESLMSHAIELKSGSNKNIHIALATLALNYSVCFHKDHNIEGKAQCLSLISTILEVV 245 (304)
T ss_dssp HHHHHHHHHGGGSHHHHHHHHHTHHHHHHHHHGGGSSCCHHHHHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhcc
Confidence 3688888899888888887764 3456666667667788999999999999996321111110 011223333333
Q ss_pred cCchHHHHHHHHHHHHhcCcchHHHHHhhcCChHHHHHHhhc--CCHHHHHHHHHHH
Q 036199 558 KDATLAVSCLVILKNMCNTEHARVCVVETSGCLPSVAELLEI--GSEEDQEHAVAIL 612 (710)
Q Consensus 558 ~~~~~~~~al~iL~nLa~~~e~r~~i~~~~g~I~~Lv~lL~~--~s~~~ke~A~~aL 612 (710)
.+.+..-.++.+|++|...+.....+.+. -++...++-+.. ..+++.++|-.+|
T Consensus 246 ~d~EalyR~LvALGtL~~~~~~~~~lak~-l~~~~~v~~~~~~~~~~kv~~~~~~~~ 301 (304)
T 3ebb_A 246 QDLEATFRLLVALGTLISDDSNAVQLAKS-LGVDSQIKKYSSVSEPAKVSECCRFIL 301 (304)
T ss_dssp CCHHHHHHHHHHHHHHHTTCHHHHHHHHH-TTHHHHGGGGGGCCSSHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhCChhHHHHHHH-cCHHHHHHHHHhCCCchhHHHHHHHHH
Confidence 35677888999999999865555555552 334444444433 3566666655443
|
| >3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B* | Back alignment and structure |
|---|
Probab=81.41 E-value=5.8 Score=42.50 Aligned_cols=99 Identities=16% Similarity=0.085 Sum_probs=73.8
Q ss_pred hHHHHHHHHHHHHhcCcchHHHHHhhcCChHHHHHHhhcCCHHHHHHHHHHHHHHhcCCh-HH-HHHH----------Hh
Q 036199 561 TLAVSCLVILKNMCNTEHARVCVVETSGCLPSVAELLEIGSEEDQEHAVAILLCLCSQRD-QY-CKLV----------MN 628 (710)
Q Consensus 561 ~~~~~al~iL~nLa~~~e~r~~i~~~~g~I~~Lv~lL~~~s~~~ke~A~~aL~~Lc~~~~-~~-~~~v----------~~ 628 (710)
.....++.+|..|..+..|...+..+..+|..|+..|.+.++.++..|+.+|..+|..+. .. ...+ .+
T Consensus 135 ~~q~~~l~CLkalmN~~~G~~~vl~~~~~i~~l~~~L~s~~~~~~~~aleLL~~lc~~~~~~gG~~~VL~Al~~~~~~~e 214 (383)
T 3eg5_B 135 RNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDE 214 (383)
T ss_dssp HHHHHHHHHHHHHTSSHHHHHHHHTCSSHHHHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhcchhhHHHHHcChHHHHHHHHHhCCCchHHHHHHHHHHHHHHhCcCcCCcHHHHHHHHHHHHHhCC
Confidence 457788999999999999999999989999999999999999999999999999997653 21 1111 22
Q ss_pred CCchHHHHHHhhc-CCHHHHHHHHHHHHHhhh
Q 036199 629 EGVIPSLVKISVY-GNDKAKVSALELRRLLRD 659 (710)
Q Consensus 629 ~G~v~~Lv~L~~~-gt~~~k~kA~~LL~~l~~ 659 (710)
..-...++..+.+ .+..-+..+..++..+-.
T Consensus 215 ~~RF~~lv~~L~~~~~~e~~~~~m~lIN~li~ 246 (383)
T 3eg5_B 215 VERFQPLLDGLKSGTSIALKVGCLQLINALIT 246 (383)
T ss_dssp SCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHT
T ss_pred CCcHHHHHHHHHccCcHHHHHHHHHHHHHHHc
Confidence 3346667776665 355555556666664443
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 710 | ||||
| d1t1ha_ | 78 | g.44.1.2 (A:) E3 ubiquitin ligase PUB14 {Thale-cre | 4e-17 | |
| d2c2la2 | 80 | g.44.1.2 (A:225-304) STIP1 homology and U box-cont | 1e-12 | |
| d1jm7a_ | 103 | g.44.1.1 (A:) brca1 RING domain {Human (Homo sapie | 5e-11 | |
| d1wgma_ | 98 | g.44.1.2 (A:) Ubiquitin conjugation factor E4A {Hu | 1e-08 | |
| d1jdha_ | 529 | a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) | 3e-08 | |
| d1jdha_ | 529 | a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) | 0.004 | |
| d1xm9a1 | 457 | a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo | 1e-06 | |
| d1xm9a1 | 457 | a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo | 1e-05 | |
| d1xm9a1 | 457 | a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo | 4e-04 | |
| d1xm9a1 | 457 | a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo | 0.002 | |
| d1rmda2 | 86 | g.44.1.1 (A:1-86) V(D)J recombination activating p | 1e-04 | |
| d1fbva4 | 79 | g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [Ta | 2e-04 | |
| d2vglb_ | 579 | a.118.1.10 (B:) Adaptin beta subunit N-terminal fr | 0.003 |
| >d1t1ha_ g.44.1.2 (A:) E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 78 | Back information, alignment and structure |
|---|
class: Small proteins fold: RING/U-box superfamily: RING/U-box family: U-box domain: E3 ubiquitin ligase PUB14 species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]
Score = 74.3 bits (182), Expect = 4e-17
Identities = 36/68 (52%), Positives = 49/68 (72%)
Query: 265 IPEVFKCPLSLRLMYDPVVIESGQTFERMWIQKWFEEGNHTCPKTKMKLVCQSLTPNTAM 324
PE F+CP+SL LM DPV++ +GQT+ER IQKW + G+ TCPK++ L+ LTPN +
Sbjct: 5 FPEYFRCPISLELMKDPVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLHAGLTPNYVL 64
Query: 325 KDLISKWC 332
K LI+ WC
Sbjct: 65 KSLIALWC 72
|
| >d2c2la2 g.44.1.2 (A:225-304) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 80 | Back information, alignment and structure |
|---|
class: Small proteins fold: RING/U-box superfamily: RING/U-box family: U-box domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Score = 61.4 bits (148), Expect = 1e-12
Identities = 22/68 (32%), Positives = 36/68 (52%)
Query: 265 IPEVFKCPLSLRLMYDPVVIESGQTFERMWIQKWFEEGNHTCPKTKMKLVCQSLTPNTAM 324
IP+ +S LM +P + SG T++R I++ + H P T+ L + L PN AM
Sbjct: 4 IPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQEQLIPNLAM 63
Query: 325 KDLISKWC 332
K++I +
Sbjct: 64 KEVIDAFI 71
|
| >d1jm7a_ g.44.1.1 (A:) brca1 RING domain {Human (Homo sapiens) [TaxId: 9606]} Length = 103 | Back information, alignment and structure |
|---|
class: Small proteins fold: RING/U-box superfamily: RING/U-box family: RING finger domain, C3HC4 domain: brca1 RING domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 57.8 bits (139), Expect = 5e-11
Identities = 18/79 (22%), Positives = 36/79 (45%), Gaps = 2/79 (2%)
Query: 265 IPEVFKCPLSLRLMYDPVVIESGQTFERMWIQKWFE--EGNHTCPKTKMKLVCQSLTPNT 322
+ ++ +CP+ L L+ +PV + F + + K +G CP K + +SL +T
Sbjct: 18 MQKILECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRSLQEST 77
Query: 323 AMKDLISKWCMNLCSSMND 341
L+ + +C+ D
Sbjct: 78 RFSQLVEELLKIICAFQLD 96
|
| >d1wgma_ g.44.1.2 (A:) Ubiquitin conjugation factor E4A {Human (Homo sapiens) [TaxId: 9606]} Length = 98 | Back information, alignment and structure |
|---|
class: Small proteins fold: RING/U-box superfamily: RING/U-box family: U-box domain: Ubiquitin conjugation factor E4A species: Human (Homo sapiens) [TaxId: 9606]
Score = 51.0 bits (121), Expect = 1e-08
Identities = 21/69 (30%), Positives = 33/69 (47%), Gaps = 2/69 (2%)
Query: 265 IPEVFKCPLSLRLMYDPVVIESGQ-TFERMWIQKWFEEGNHTCPKTKMKLVCQSLTPNTA 323
+ F P+ LM DPVV+ S + T +R I + + T P + L + PNT
Sbjct: 19 ACDEFLDPIMSTLMCDPVVLPSSRVTVDRSTIARHLLS-DQTDPFNRSPLTMDQIRPNTE 77
Query: 324 MKDLISKWC 332
+K+ I +W
Sbjct: 78 LKEKIQRWL 86
|
| >d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: beta-Catenin species: Human (Homo sapiens) [TaxId: 9606]
Score = 54.1 bits (128), Expect = 3e-08
Identities = 28/137 (20%), Positives = 50/137 (36%), Gaps = 5/137 (3%)
Query: 523 FQELAIKILHNL--SSDVDIQSHIAPSEFLPKLVPFLKDATLAVSCLVILKNMCNTEHAR 580
++ AI L L + D Q + + V ++ + C L + H R
Sbjct: 394 REQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNR 453
Query: 581 VCVVETSGCLPSVAELLEIGSEEDQEHAVAILLCLCSQRDQYCKLVMNEGVIPSLVKISV 640
+ + +P +LL E Q A A +LC +Q + + + EG L ++
Sbjct: 454 IVIRG-LNTIPLFVQLLYSPIENIQRVA-AGVLCELAQDKEAAEAIEAEGATAPLTELLH 511
Query: 641 YGNDKAKVSALE-LRRL 656
N+ A L R+
Sbjct: 512 SRNEGVATYAAAVLFRM 528
|
| >d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: beta-Catenin species: Human (Homo sapiens) [TaxId: 9606]
Score = 37.9 bits (86), Expect = 0.004
Identities = 22/106 (20%), Positives = 34/106 (32%), Gaps = 4/106 (3%)
Query: 432 LRDARDLHDSRAQRIGCRLLLAFVSKNRSGIPYLNEDLFSLLASFLHSAAAT--EETLAI 489
+ + + G +LA NR I + L L+S +
Sbjct: 426 FVEGVRMEEIVEGCTGALHILARDVHNRIVI--RGLNTIPLFVQLLYSPIENIQRVAAGV 483
Query: 490 LVALSSYAYFISKIVASGALASILNMLDSPNGKFQELAIKILHNLS 535
L L+ I A GA A + +L S N A +L +S
Sbjct: 484 LCELAQDKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMS 529
|
| >d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 457 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Plakophilin 1 helical region domain: Plakophilin 1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 49.1 bits (115), Expect = 1e-06
Identities = 18/92 (19%), Positives = 34/92 (36%), Gaps = 4/92 (4%)
Query: 550 LPKLVPFLK--DATLAVSCLVILKNMC-NTEHARVCVVETSGCLPSVAELLEIGSEEDQE 606
+PK V +L D +++ C E A+ V + G + + +LL ++ Q+
Sbjct: 4 IPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQ-LGGICKLVDLLRSPNQNVQQ 62
Query: 607 HAVAILLCLCSQRDQYCKLVMNEGVIPSLVKI 638
A L L + + I V +
Sbjct: 63 AAAGALRNLVFRSTTNKLETRRQNGIREAVSL 94
|
| >d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 457 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Plakophilin 1 helical region domain: Plakophilin 1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 46.0 bits (107), Expect = 1e-05
Identities = 26/186 (13%), Positives = 59/186 (31%), Gaps = 18/186 (9%)
Query: 501 SKIVASGALASILNMLDSPNGKFQELAIKILHNLSSD-VDIQSHIAPSEFLPKLVPFLKD 559
++ G + ++++L SPN Q+ A L NL + + + V L+
Sbjct: 38 QQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLETRRQNGIREAVSLLRR 97
Query: 560 AT---LAVSCLVILKNMCNTEHARVCVVE--------------TSGCLPSVAELLEIGSE 602
+ +L N+ +T+ + ++ + C + E+
Sbjct: 98 TGNAEIQKQLTGLLWNLSSTDELKEELIADALPVLADRVIIPFSGWCDGNSNMSREVVDP 157
Query: 603 EDQEHAVAILLCLCSQRDQYCKLVMNEGVIPSLVKISVYGNDKAKVSALELRRLLRDVAY 662
E +A L L S + G+I SL+ ++ + + +
Sbjct: 158 EVFFNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHN 217
Query: 663 SVEQQC 668
+
Sbjct: 218 LSYRLD 223
|
| >d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 457 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Plakophilin 1 helical region domain: Plakophilin 1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 41.4 bits (95), Expect = 4e-04
Identities = 16/71 (22%), Positives = 26/71 (36%), Gaps = 1/71 (1%)
Query: 590 LPSVAELLEIGSEEDQEHAVAILLCLCSQRDQYCKLVMNEGVIPSLVKISVYGNDKAKVS 649
+P + L E+ Q + C Q + + V G I LV + N + +
Sbjct: 4 IPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQA 63
Query: 650 ALE-LRRLLRD 659
A LR L+
Sbjct: 64 AAGALRNLVFR 74
|
| >d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 457 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Plakophilin 1 helical region domain: Plakophilin 1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 39.0 bits (89), Expect = 0.002
Identities = 20/181 (11%), Positives = 46/181 (25%), Gaps = 11/181 (6%)
Query: 369 IADGSNRTPLWTNVHDIDLSRLTELNWDCQCKVIEDYETRLEHDNQVSHSLSSTNFVEPL 428
+ + E + +Q+ + +
Sbjct: 279 LYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSGMSQLI--GLKEKGLPQI 336
Query: 429 IRFLRDARDLHDSRAQRIGCRLLLAFVSKNRS-----GIPYLNEDLFSLLASFLHSAAAT 483
R L+ ++ P + L S + +S
Sbjct: 337 ARLLQSGNSDVVRSG--ASLLSNMSRHPLLHRVMGNQVFPEVTRLLTSHTGNTSNSEDIL 394
Query: 484 EETLAILVALSS-YAYFISKIVASGALASILNMLDSP-NGKFQELAIKILHNLSSDVDIQ 541
+ L + + +S L +I+N+ S + K E A +L ++ S ++Q
Sbjct: 395 SSACYTVRNLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDMWSSKELQ 454
Query: 542 S 542
Sbjct: 455 G 455
|
| >d1rmda2 g.44.1.1 (A:1-86) V(D)J recombination activating protein 1 (RAG1), dimerization domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 86 | Back information, alignment and structure |
|---|
class: Small proteins fold: RING/U-box superfamily: RING/U-box family: RING finger domain, C3HC4 domain: V(D)J recombination activating protein 1 (RAG1), dimerization domain species: Mouse (Mus musculus) [TaxId: 10090]
Score = 39.1 bits (91), Expect = 1e-04
Identities = 10/52 (19%), Positives = 17/52 (32%)
Query: 269 FKCPLSLRLMYDPVVIESGQTFERMWIQKWFEEGNHTCPKTKMKLVCQSLTP 320
C + ++ DPV F R+ I + + CP + L
Sbjct: 24 ISCQICEHILADPVETSCKHLFCRICILRCLKVMGSYCPSCRYPCFPTDLES 75
|
| >d1fbva4 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [TaxId: 9606]} Length = 79 | Back information, alignment and structure |
|---|
class: Small proteins fold: RING/U-box superfamily: RING/U-box family: RING finger domain, C3HC4 domain: CBL species: Human (Homo sapiens) [TaxId: 9606]
Score = 38.4 bits (89), Expect = 2e-04
Identities = 7/43 (16%), Positives = 13/43 (30%)
Query: 271 CPLSLRLMYDPVVIESGQTFERMWIQKWFEEGNHTCPKTKMKL 313
C + D + G + W E CP + ++
Sbjct: 26 CKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEI 68
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 710 | |||
| d1t1ha_ | 78 | E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsi | 99.87 | |
| d2c2la2 | 80 | STIP1 homology and U box-containing protein 1, STU | 99.85 | |
| d1jdha_ | 529 | beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} | 99.84 | |
| d1wgma_ | 98 | Ubiquitin conjugation factor E4A {Human (Homo sapi | 99.81 | |
| d1wa5b_ | 503 | Karyopherin alpha {Baker's yeast (Saccharomyces ce | 99.8 | |
| d1q1sc_ | 434 | Importin alpha {Mouse (Mus musculus) [TaxId: 10090 | 99.8 | |
| d1wa5b_ | 503 | Karyopherin alpha {Baker's yeast (Saccharomyces ce | 99.79 | |
| d1q1sc_ | 434 | Importin alpha {Mouse (Mus musculus) [TaxId: 10090 | 99.79 | |
| d1jdha_ | 529 | beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} | 99.77 | |
| d1xm9a1 | 457 | Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} | 99.77 | |
| d1xqra1 | 264 | Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi | 99.65 | |
| d1xm9a1 | 457 | Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} | 99.63 | |
| d1xqra1 | 264 | Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi | 99.63 | |
| d2baya1 | 56 | Pre-mRNA splicing factor Prp19 {Baker's yeast (Sac | 99.43 | |
| d1rmda2 | 86 | V(D)J recombination activating protein 1 (RAG1), d | 99.41 | |
| d1jm7a_ | 103 | brca1 RING domain {Human (Homo sapiens) [TaxId: 96 | 99.38 | |
| d1jm7b_ | 97 | bard1 RING domain {Human (Homo sapiens) [TaxId: 96 | 99.35 | |
| d1fbva4 | 79 | CBL {Human (Homo sapiens) [TaxId: 9606]} | 99.12 | |
| d1bora_ | 56 | Acute promyelocytic leukaemia proto-oncoprotein PM | 98.9 | |
| d1g25a_ | 65 | TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9 | 98.8 | |
| d1chca_ | 68 | Immediate early protein, IEEHV {Equine herpesvirus | 98.66 | |
| d1ur6b_ | 52 | Not-4 N-terminal RING finger domain {Human (Homo s | 98.49 | |
| d1iyma_ | 55 | EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 45 | 98.39 | |
| d1v87a_ | 114 | Deltex protein 2 RING-H2 domain {Mouse (Mus muscul | 98.16 | |
| d1vyxa_ | 60 | IE1B protein (ORF K3), N-terminal domain {Kaposi's | 97.98 | |
| d3dplr1 | 88 | RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase | 97.7 | |
| d2vglb_ | 579 | Adaptin beta subunit N-terminal fragment {Human (H | 97.56 | |
| d1b3ua_ | 588 | Constant regulatory domain of protein phosphatase | 97.54 | |
| d2vglb_ | 579 | Adaptin beta subunit N-terminal fragment {Human (H | 97.53 | |
| d1oyza_ | 276 | Hypothetical protein YibA {Escherichia coli [TaxId | 97.5 | |
| d1b3ua_ | 588 | Constant regulatory domain of protein phosphatase | 97.39 | |
| d1oyza_ | 276 | Hypothetical protein YibA {Escherichia coli [TaxId | 97.32 | |
| d1ibrb_ | 458 | Importin beta {Human (Homo sapiens) [TaxId: 9606]} | 96.88 | |
| d1ho8a_ | 477 | Regulatory subunit H of the V-type ATPase {Baker's | 96.86 | |
| d1wima_ | 94 | UbcM4-interacting protein 4 (KIAA0161) {Human (Hom | 96.6 | |
| d1ibrb_ | 458 | Importin beta {Human (Homo sapiens) [TaxId: 9606]} | 96.56 | |
| d1te4a_ | 111 | MTH187 {Archaeon Methanobacterium thermoautotrophi | 96.53 | |
| d1u6gc_ | 1207 | Cullin-associated NEDD8-dissociated protein 1 (Tip | 96.5 | |
| d2bpta1 | 861 | Importin beta {Baker's yeast (Saccharomyces cerevi | 96.28 | |
| d1te4a_ | 111 | MTH187 {Archaeon Methanobacterium thermoautotrophi | 96.24 | |
| d2vgla_ | 584 | Adaptin alpha C subunit N-terminal fragment {Mouse | 96.09 | |
| d1qbkb_ | 888 | Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96 | 95.96 | |
| d1qgra_ | 876 | Importin beta {Human (Homo sapiens) [TaxId: 9606]} | 95.55 | |
| d1qbkb_ | 888 | Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96 | 95.49 | |
| d2vgla_ | 584 | Adaptin alpha C subunit N-terminal fragment {Mouse | 95.42 | |
| d1u6gc_ | 1207 | Cullin-associated NEDD8-dissociated protein 1 (Tip | 95.4 | |
| d1ho8a_ | 477 | Regulatory subunit H of the V-type ATPase {Baker's | 94.17 | |
| d2bpta1 | 861 | Importin beta {Baker's yeast (Saccharomyces cerevi | 94.16 | |
| d1qgra_ | 876 | Importin beta {Human (Homo sapiens) [TaxId: 9606]} | 94.01 | |
| d1upka_ | 330 | Mo25 protein {Human (Homo sapiens) [TaxId: 9606]} | 90.09 | |
| d1lrva_ | 233 | Leucine-rich repeat variant {Azotobacter vinelandi | 83.15 |
| >d1t1ha_ g.44.1.2 (A:) E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Small proteins fold: RING/U-box superfamily: RING/U-box family: U-box domain: E3 ubiquitin ligase PUB14 species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.87 E-value=2.8e-23 Score=173.09 Aligned_cols=76 Identities=47% Similarity=0.932 Sum_probs=72.7
Q ss_pred CCCCCcccccCCccccCCceecCCCCccchhhHHHHhhhCCCCCCCCCCccCCCCCcccHHHHHHHHHHHHHcCCC
Q 036199 263 AIIPEVFKCPLSLRLMYDPVVIESGQTFERMWIQKWFEEGNHTCPKTKMKLVCQSLTPNTAMKDLISKWCMNLCSS 338 (710)
Q Consensus 263 ~~~p~~f~CPI~~~~m~DPV~~~~G~ty~r~~I~~w~~~g~~~cP~t~~~l~~~~l~pN~~l~~~i~~w~~~~~~~ 338 (710)
+++|++|.||||+++|+|||+++|||||||.||++|+..+..+||.|+.++...+++||++||++|++|+++||+.
T Consensus 3 peiP~~l~CpIc~~~m~dPV~~~cgh~fc~~ci~~~~~~~~~~cP~~~~~l~~~~l~pN~~L~~~I~~~~~~~~~e 78 (78)
T d1t1ha_ 3 PEFPEYFRCPISLELMKDPVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLHAGLTPNYVLKSLIALWCESNGIE 78 (78)
T ss_dssp CCCSSSSSCTTTSCCCSSEEEETTTEEEEHHHHHHHHTTTCCBCTTTCCBCSSCCCEECTTTHHHHHHHHHHSCCC
T ss_pred CCCCccCCCcCcCchhhCceEccCCCcchHHHHHHHHHHCCCCCCcccccCCcccccchHHHHHHHHHHHHHhCcC
Confidence 5789999999999999999999999999999999999988889999999999999999999999999999999963
|
| >d2c2la2 g.44.1.2 (A:225-304) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Small proteins fold: RING/U-box superfamily: RING/U-box family: U-box domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.85 E-value=2e-22 Score=168.71 Aligned_cols=74 Identities=30% Similarity=0.429 Sum_probs=71.1
Q ss_pred CCCCcccccCCccccCCceecCCCCccchhhHHHHhhhCCCCCCCCCCccCCCCCcccHHHHHHHHHHHHHcCC
Q 036199 264 IIPEVFKCPLSLRLMYDPVVIESGQTFERMWIQKWFEEGNHTCPKTKMKLVCQSLTPNTAMKDLISKWCMNLCS 337 (710)
Q Consensus 264 ~~p~~f~CPI~~~~m~DPV~~~~G~ty~r~~I~~w~~~g~~~cP~t~~~l~~~~l~pN~~l~~~i~~w~~~~~~ 337 (710)
++|++|.||||+++|+|||+++|||||||.||++|+..++.+||.|++++...+++||..|+++|++|+.+||.
T Consensus 3 eiP~~l~CpIc~~l~~dPv~~~cGhtfc~~ci~~~l~~~~~~cP~c~~~l~~~~l~pN~~L~~~I~~~l~~~~~ 76 (80)
T d2c2la2 3 DIPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQEQLIPNLAMKEVIDAFISENGW 76 (80)
T ss_dssp CCCSTTBCTTTCSBCSSEEECSSCCEEETTHHHHHHHHTCSSCTTTCCCCCGGGCEECHHHHHHHHHHHTTCSC
T ss_pred CCCccccCcCcCchhhhhcccCCcCeecHHHHHHHHhcCCccCCCccccccccccccHHHHHHHHHHHHHHCCC
Confidence 58999999999999999999999999999999999998888999999999998999999999999999999984
|
| >d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: beta-Catenin species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.84 E-value=2.3e-20 Score=208.44 Aligned_cols=269 Identities=17% Similarity=0.155 Sum_probs=225.5
Q ss_pred hhhcCCCHHHHHHHHHHHHHHHccCcccchhcccCCcHHHHHHHhhccccCCCHHHHHHHHHHHHHHhccCCCCCccccc
Q 036199 388 SRLTELNWDCQCKVIEDYETRLEHDNQVSHSLSSTNFVEPLIRFLRDARDLHDSRAQRIGCRLLLAFVSKNRSGIPYLNE 467 (710)
Q Consensus 388 ~~L~s~~~e~q~~Al~~L~~Lak~~~~~r~~I~~~G~I~~LV~lL~s~~~~~d~~~q~~A~~~L~nL~~~~~~k~~i~~~ 467 (710)
..|.+.+..++..|+..+..+++.+...+..+...|+++.|+++|.+. .+.+.++.|+.+|.+++.+..++..+++.
T Consensus 24 ~lL~~~~~~v~~~A~~~l~~l~~~~~~~~~~~~~~~~v~~l~~~L~~~---~~~~~~~~a~~~L~~l~~~~~~~~~i~~~ 100 (529)
T d1jdha_ 24 KLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNT---NDVETARCTAGTLHNLSHHREGLLAIFKS 100 (529)
T ss_dssp HHHTCSCHHHHHHHHHHHHHHHTSHHHHHHHHTCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHHHTTSHHHHHHHHHT
T ss_pred HHHcCCCHHHHHHHHHHHHHHHhccHHHHHHHHhhhHHHHHHHHHcCC---CCHHHHHHHHHHHHHHhCCchhHHHHHHC
Confidence 567778899999999999999976555555555678999999999763 57899999999999998877777888899
Q ss_pred cchHHHHHHhccCcHH--HHHHHHHHHhccC-chhhHHHhhhCcHHHHHHhhcCCCHHHHHHHHHHHHHhccC-cccccc
Q 036199 468 DLFSLLASFLHSAAAT--EETLAILVALSSY-AYFISKIVASGALASILNMLDSPNGKFQELAIKILHNLSSD-VDIQSH 543 (710)
Q Consensus 468 gaI~~LV~lL~s~~~~--~~Aa~~L~~Ls~~-~~nk~~I~~~GaI~~LV~LL~~~~~~~~~~A~~aL~nLs~~-~en~~~ 543 (710)
|+++.|+.+|++++.. ..|+++|.+|+.+ +..+..+.+.|+||+|+.+|.++++..+..++.+|.+|+.. ++++..
T Consensus 101 g~i~~Li~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~ 180 (529)
T d1jdha_ 101 GGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLI 180 (529)
T ss_dssp THHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CCHHHHHHHhCCCCHHHHHHHHHHHHHhhcccchhhhHHHhcCCchHHHHHHHccChHHHHHHHHHHHHHhhhhhHHHHH
Confidence 9999999999988763 6999999999865 45677777999999999999999999999999999999974 556677
Q ss_pred cccccchhchHHhhcC---chHHHHHHHHHHHHhcCcchHHHHHhhcCC-------------------------------
Q 036199 544 IAPSEFLPKLVPFLKD---ATLAVSCLVILKNMCNTEHARVCVVETSGC------------------------------- 589 (710)
Q Consensus 544 iv~aG~V~~Lv~lL~~---~~~~~~al~iL~nLa~~~e~r~~i~~~~g~------------------------------- 589 (710)
++..|++++|+.++.. ..+...++.++.+++.+++++..+++ .|+
T Consensus 181 ~~~~~~~~~L~~ll~~~~~~~~~~~~~~~l~~ls~~~~~~~~~~~-~g~~~~L~~ll~~~~~~~~~~a~~~l~~ls~~~~ 259 (529)
T d1jdha_ 181 ILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVE-AGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAAT 259 (529)
T ss_dssp HHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSTTHHHHHHH-TTHHHHHHTTTTSSCHHHHHHHHHHHHHHHTTCT
T ss_pred HHhcccchHHHHHHHhhhhHHHHHHHHHHHhhhhccccccchhhh-hhhhhhHHHHhcccchhhhhhhhhHHHhcccccc
Confidence 8889999999999943 35788899999999988888877766 444
Q ss_pred --------hHHHHHHhhcCCHHHHHHHHHHHHHHhcCChHHHHHHHhCCchHHHHHHh--hcCCHHHHHHHHHHHHHhhh
Q 036199 590 --------LPSVAELLEIGSEEDQEHAVAILLCLCSQRDQYCKLVMNEGVIPSLVKIS--VYGNDKAKVSALELRRLLRD 659 (710)
Q Consensus 590 --------I~~Lv~lL~~~s~~~ke~A~~aL~~Lc~~~~~~~~~v~~~G~v~~Lv~L~--~~gt~~~k~kA~~LL~~l~~ 659 (710)
++.|++++.++++..++.|+.+|.+|+.++..++..+.+.|+++.|+.++ .+..+..++.|...|+.+..
T Consensus 260 ~~~~~~~~i~~Lv~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~Li~~l~~~~~~~~~~~~a~~aL~~l~~ 339 (529)
T d1jdha_ 260 KQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTS 339 (529)
T ss_dssp TCSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTS
T ss_pred chhhhhhcchhhhhhcccccHHHHHHHHHHHHhhccchhHHHHHHHHhhhHHHHHHHHHhhhcchhHHHHHHHHhhcccc
Confidence 45555556667788888999999999999988999999999999998876 34567888999999987764
Q ss_pred c
Q 036199 660 V 660 (710)
Q Consensus 660 ~ 660 (710)
.
T Consensus 340 ~ 340 (529)
T d1jdha_ 340 R 340 (529)
T ss_dssp S
T ss_pred h
Confidence 3
|
| >d1wgma_ g.44.1.2 (A:) Ubiquitin conjugation factor E4A {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: RING/U-box superfamily: RING/U-box family: U-box domain: Ubiquitin conjugation factor E4A species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.81 E-value=1.3e-20 Score=163.23 Aligned_cols=75 Identities=29% Similarity=0.415 Sum_probs=68.9
Q ss_pred cCCCCCcccccCCccccCCceecCCC-CccchhhHHHHhhhCCCCCCCCCCccCCCCCcccHHHHHHHHHHHHHcCC
Q 036199 262 RAIIPEVFKCPLSLRLMYDPVVIESG-QTFERMWIQKWFEEGNHTCPKTKMKLVCQSLTPNTAMKDLISKWCMNLCS 337 (710)
Q Consensus 262 ~~~~p~~f~CPI~~~~m~DPV~~~~G-~ty~r~~I~~w~~~g~~~cP~t~~~l~~~~l~pN~~l~~~i~~w~~~~~~ 337 (710)
...+|++|+||||+++|+|||+++|| |||||.||++||.. +.+||.|++++....|+||.+||+.|++|++++.-
T Consensus 16 ~~~~P~~f~CPI~~~lm~dPV~~~~~~~ty~r~~I~~~l~~-~~~~P~~~~~l~~~~L~pN~~Lr~~I~~~~~~~~~ 91 (98)
T d1wgma_ 16 YADACDEFLDPIMSTLMCDPVVLPSSRVTVDRSTIARHLLS-DQTDPFNRSPLTMDQIRPNTELKEKIQRWLAERKQ 91 (98)
T ss_dssp CCSCCTTTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHTTT-SCBCTTTCSBCCTTTSEECHHHHHHHHHHHHHSTT
T ss_pred hcCCcHHhCCcCchhHHHHHHhcccccchhhHHHHHHHHHh-cCCcccccccccchhhcchHHHHHHHHHHHHHHHH
Confidence 35789999999999999999999876 69999999999975 56899999999999999999999999999999863
|
| >d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Karyopherin alpha species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.80 E-value=1.1e-18 Score=193.62 Aligned_cols=268 Identities=17% Similarity=0.187 Sum_probs=229.5
Q ss_pred hhhcCCCHHHHHHHHHHHHHHHcc-CcccchhcccCCcHHHHHHHhhccccCCCHHHHHHHHHHHHHHhccC-CCCCccc
Q 036199 388 SRLTELNWDCQCKVIEDYETRLEH-DNQVSHSLSSTNFVEPLIRFLRDARDLHDSRAQRIGCRLLLAFVSKN-RSGIPYL 465 (710)
Q Consensus 388 ~~L~s~~~e~q~~Al~~L~~Lak~-~~~~r~~I~~~G~I~~LV~lL~s~~~~~d~~~q~~A~~~L~nL~~~~-~~k~~i~ 465 (710)
..+.+++.+.|..|+..++.+... .......+.+.|+++.|+.+|... .+..+|..|+.+|.|++... .....+.
T Consensus 83 ~~~~s~~~~~~~~a~~~~r~~ls~~~~~~i~~ii~~g~i~~Lv~~l~~~---~~~~iq~~a~~~L~ni~~~~~~~~~~~~ 159 (503)
T d1wa5b_ 83 QQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMREN---QPEMLQLEAAWALTNIASGTSAQTKVVV 159 (503)
T ss_dssp HHHSCSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTT---SCHHHHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred HHhcCCCHHHHHHHHHHHHHHHhcCCCchHHHHHHCCChHHHHHHHcCC---CCHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 556778889999999999987743 333446778899999999999763 57889999999999997643 3344566
Q ss_pred cccchHHHHHHhccCcH--HHHHHHHHHHhcc-CchhhHHHhhhCcHHHHHHhhcCCCHHHHHHHHHHHHHhccCccccc
Q 036199 466 NEDLFSLLASFLHSAAA--TEETLAILVALSS-YAYFISKIVASGALASILNMLDSPNGKFQELAIKILHNLSSDVDIQS 542 (710)
Q Consensus 466 ~~gaI~~LV~lL~s~~~--~~~Aa~~L~~Ls~-~~~nk~~I~~~GaI~~LV~LL~~~~~~~~~~A~~aL~nLs~~~en~~ 542 (710)
..|+++.++.+|.+++. .+.|+++|.||+. ...++..+.+.|++++|+.++.+.++..+..++++|.||+.+.....
T Consensus 160 ~~g~i~~l~~lL~s~~~~i~~~a~~~L~nia~~~~~~r~~l~~~~~~~~L~~ll~~~~~~~~~~~~~~l~nl~~~~~~~~ 239 (503)
T d1wa5b_ 160 DADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQP 239 (503)
T ss_dssp HTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCSSSCC
T ss_pred hCCChHHHHHHhcCCChhHHHHHHHHHHHHhhhhHHHHHHHHhhcccccchhhcccCCHHHHHHHHHHHHHHhcCCccch
Confidence 89999999999998875 3799999999985 56889999999999999999999999999999999999998765554
Q ss_pred c-cccccchhchHHhhcC--chHHHHHHHHHHHHhcC-cchHHHHHhhcCChHHHHHHhhcCCHHHHHHHHHHHHHHhcC
Q 036199 543 H-IAPSEFLPKLVPFLKD--ATLAVSCLVILKNMCNT-EHARVCVVETSGCLPSVAELLEIGSEEDQEHAVAILLCLCSQ 618 (710)
Q Consensus 543 ~-iv~aG~V~~Lv~lL~~--~~~~~~al~iL~nLa~~-~e~r~~i~~~~g~I~~Lv~lL~~~s~~~ke~A~~aL~~Lc~~ 618 (710)
. ....|++|.|+.++.+ .++...++++|.+|+.. ++....+.+ .|+++.|+.++.++++..+..|+.+|.+++.+
T Consensus 240 ~~~~~~~~l~~l~~~l~~~d~~~~~~~~~~l~~l~~~~~~~~~~~~~-~~~~~~l~~ll~~~~~~v~~~al~~l~nl~~~ 318 (503)
T d1wa5b_ 240 DWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVID-VRIPKRLVELLSHESTLVQTPALRAVGNIVTG 318 (503)
T ss_dssp CHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHH-TTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhccCCchhhhhhhh-hhhhhhhhhcccCCchhhhhhHHHHHHHHHHH
Confidence 4 4567999999999954 56788999999999985 455567777 79999999999999999999999999999999
Q ss_pred ChHHHHHHHhCCchHHHHHHhhcCCHHHHHHHHHHHHHhhh
Q 036199 619 RDQYCKLVMNEGVIPSLVKISVYGNDKAKVSALELRRLLRD 659 (710)
Q Consensus 619 ~~~~~~~v~~~G~v~~Lv~L~~~gt~~~k~kA~~LL~~l~~ 659 (710)
.......+.+.|+++.|..++.+.++..++.|.+.|..+..
T Consensus 319 ~~~~~~~~~~~~~l~~l~~ll~~~~~~i~~~~~~~l~nl~~ 359 (503)
T d1wa5b_ 319 NDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITA 359 (503)
T ss_dssp CHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHhhhccchHHHHHHHhcCCCHHHHHHHHHHHHHHhh
Confidence 98888899999999999999999999999999999987754
|
| >d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.80 E-value=1.1e-18 Score=188.20 Aligned_cols=270 Identities=16% Similarity=0.202 Sum_probs=226.1
Q ss_pred hhhcCCCHHHHHHHHHHHHHHHccCccc-chhcccCCcHHHHHHHhhccccCCCHHHHHHHHHHHHHHhcc-CCCCCccc
Q 036199 388 SRLTELNWDCQCKVIEDYETRLEHDNQV-SHSLSSTNFVEPLIRFLRDARDLHDSRAQRIGCRLLLAFVSK-NRSGIPYL 465 (710)
Q Consensus 388 ~~L~s~~~e~q~~Al~~L~~Lak~~~~~-r~~I~~~G~I~~LV~lL~s~~~~~d~~~q~~A~~~L~nL~~~-~~~k~~i~ 465 (710)
..|.+++.+.|..|+..++.++..+... ...+.+.|++|.|+++|++. .++++|..|+.+|.+++.. ...+..++
T Consensus 20 ~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~i~~~g~i~~Lv~lL~~~---~~~~v~~~a~~~L~~la~~~~~~~~~i~ 96 (434)
T d1q1sc_ 20 KGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKT---DCSPIQFESAWALTNIASGTSEQTKAVV 96 (434)
T ss_dssp HHHTSSCHHHHHHHHHHHHHHHHSSSCCCHHHHHHTTCHHHHHHHTTCG---GGHHHHHHHHHHHHHHHTSCHHHHHHHH
T ss_pred HHHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHccC---CCHHHHHHHHHHHHHHhcCChhhhhHhh
Confidence 6788999999999999999887543332 45678899999999999752 4678999999999999764 34566677
Q ss_pred cccchHHHHHHhccCcHH--HHHHHHHHHhccC-chhhHHHhhhCcHHHHHHhhcCCC-----HHHHHHHHHHHHHhccC
Q 036199 466 NEDLFSLLASFLHSAAAT--EETLAILVALSSY-AYFISKIVASGALASILNMLDSPN-----GKFQELAIKILHNLSSD 537 (710)
Q Consensus 466 ~~gaI~~LV~lL~s~~~~--~~Aa~~L~~Ls~~-~~nk~~I~~~GaI~~LV~LL~~~~-----~~~~~~A~~aL~nLs~~ 537 (710)
+.|+++.|+.+|.+++.. +.|+++|.+++.+ +.++..+.+.|+++.|+.++..++ ......++.++.+++.+
T Consensus 97 ~~~~i~~l~~~L~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~ 176 (434)
T d1q1sc_ 97 DGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRN 176 (434)
T ss_dssp HTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHTCC
T ss_pred hccchhhhhhccccCCHHHHHHHHHHHHHHhccchHHHHHHHHhhhhhHHHHHHHhcccccchHHHHHHHHHHHHHHhhc
Confidence 999999999999988763 7899999999864 567888889999999999997654 35567788899999986
Q ss_pred ccccccc-ccccchhchHHhhcC--chHHHHHHHHHHHHhcCcchHHHHHhhcCChHHHHHHhhcCCHHHHHHHHHHHHH
Q 036199 538 VDIQSHI-APSEFLPKLVPFLKD--ATLAVSCLVILKNMCNTEHARVCVVETSGCLPSVAELLEIGSEEDQEHAVAILLC 614 (710)
Q Consensus 538 ~en~~~i-v~aG~V~~Lv~lL~~--~~~~~~al~iL~nLa~~~e~r~~i~~~~g~I~~Lv~lL~~~s~~~ke~A~~aL~~ 614 (710)
....... ...++++.|+.++.+ +++...++.+|.+|+.++..+..+....|+++.|+.++.++++..+..|+.+|.+
T Consensus 177 ~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~Lv~ll~~~~~~~~~~al~~l~~ 256 (434)
T d1q1sc_ 177 KNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGN 256 (434)
T ss_dssp CTTCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHH
T ss_pred ccccchhhhhhhHHHHHHHHHhccccchhhhHHhhhcccchhhhhhHHHHhhcccchhcccccccchhhhhhchhhhhhh
Confidence 6554443 467899999999954 5678999999999998765554444338999999999999999999999999999
Q ss_pred HhcCChHHHHHHHhCCchHHHHHHhhcCCHHHHHHHHHHHHHhhhc
Q 036199 615 LCSQRDQYCKLVMNEGVIPSLVKISVYGNDKAKVSALELRRLLRDV 660 (710)
Q Consensus 615 Lc~~~~~~~~~v~~~G~v~~Lv~L~~~gt~~~k~kA~~LL~~l~~~ 660 (710)
++.+++.....+.+.|+++.|+.++.+.++..++.|.+.|..+...
T Consensus 257 l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~ 302 (434)
T d1q1sc_ 257 IVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAG 302 (434)
T ss_dssp HTTSCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHHHHHHTTS
T ss_pred HHhhhhHHHHHHHhccccchHHHhhcccchhhhHHHHHHHhhhccc
Confidence 9999988889999999999999999999999999999999987653
|
| >d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Karyopherin alpha species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.79 E-value=1.1e-18 Score=193.42 Aligned_cols=263 Identities=15% Similarity=0.091 Sum_probs=228.6
Q ss_pred CCHHHHHHHHHHHHHHHccCcccchhcccCCcHHHHHHHhhccccCCCHHHHHHHHHHHHHHhcc-CCCCCccccccchH
Q 036199 393 LNWDCQCKVIEDYETRLEHDNQVSHSLSSTNFVEPLIRFLRDARDLHDSRAQRIGCRLLLAFVSK-NRSGIPYLNEDLFS 471 (710)
Q Consensus 393 ~~~e~q~~Al~~L~~Lak~~~~~r~~I~~~G~I~~LV~lL~s~~~~~d~~~q~~A~~~L~nL~~~-~~~k~~i~~~gaI~ 471 (710)
.+.+.|..|++.|..++..+++....+...|+++.++.+|.+ ++.+++..|+.+|.|++.+ ...+..+.+.|+++
T Consensus 132 ~~~~iq~~a~~~L~ni~~~~~~~~~~~~~~g~i~~l~~lL~s----~~~~i~~~a~~~L~nia~~~~~~r~~l~~~~~~~ 207 (503)
T d1wa5b_ 132 QPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYT----GSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAME 207 (503)
T ss_dssp SCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHH----CCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHH
T ss_pred CCHHHHHHHHHHHHHHHcCCHHHHHHHHhCCChHHHHHHhcC----CChhHHHHHHHHHHHHhhhhHHHHHHHHhhcccc
Confidence 467889999999999998888888888999999999999988 7899999999999999764 45567777999999
Q ss_pred HHHHHhccCcHH--HHHHHHHHHhccCchhhH-HHhhhCcHHHHHHhhcCCCHHHHHHHHHHHHHhccCcc-cccccccc
Q 036199 472 LLASFLHSAAAT--EETLAILVALSSYAYFIS-KIVASGALASILNMLDSPNGKFQELAIKILHNLSSDVD-IQSHIAPS 547 (710)
Q Consensus 472 ~LV~lL~s~~~~--~~Aa~~L~~Ls~~~~nk~-~I~~~GaI~~LV~LL~~~~~~~~~~A~~aL~nLs~~~e-n~~~iv~a 547 (710)
.|+.++.+.... ..++++|.+|+....... .....|++|.|+.++.+++++....++++|.+|+.... ....+++.
T Consensus 208 ~L~~ll~~~~~~~~~~~~~~l~nl~~~~~~~~~~~~~~~~l~~l~~~l~~~d~~~~~~~~~~l~~l~~~~~~~~~~~~~~ 287 (503)
T d1wa5b_ 208 PILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDV 287 (503)
T ss_dssp HHHHGGGSCCHHHHHHHHHHHHHHHCCSSSCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHT
T ss_pred cchhhcccCCHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhccCCchhhhhhhhh
Confidence 999999987753 689999999997654433 33457899999999999999999999999999997554 45678899
Q ss_pred cchhchHHhhcC--chHHHHHHHHHHHHhcCcchHH-HHHhhcCChHHHHHHhhcCCHHHHHHHHHHHHHHhcCChHHHH
Q 036199 548 EFLPKLVPFLKD--ATLAVSCLVILKNMCNTEHARV-CVVETSGCLPSVAELLEIGSEEDQEHAVAILLCLCSQRDQYCK 624 (710)
Q Consensus 548 G~V~~Lv~lL~~--~~~~~~al~iL~nLa~~~e~r~-~i~~~~g~I~~Lv~lL~~~s~~~ke~A~~aL~~Lc~~~~~~~~ 624 (710)
|+++.|+.++.+ ..+...|+.+|.+++.+.+... .+.+ .|+++.|..++.+.++..++.++++|.+++.+++....
T Consensus 288 ~~~~~l~~ll~~~~~~v~~~al~~l~nl~~~~~~~~~~~~~-~~~l~~l~~ll~~~~~~i~~~~~~~l~nl~~~~~~~~~ 366 (503)
T d1wa5b_ 288 RIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVIN-AGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQ 366 (503)
T ss_dssp TCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHH-TTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred hhhhhhhhcccCCchhhhhhHHHHHHHHHHHHHHHHHhhhc-cchHHHHHHHhcCCCHHHHHHHHHHHHHHhhccHHHHH
Confidence 999999999954 4678999999999998655544 4455 79999999999999999999999999999999988889
Q ss_pred HHHhCCchHHHHHHhhcCCHHHHHHHHHHHHHhhhc
Q 036199 625 LVMNEGVIPSLVKISVYGNDKAKVSALELRRLLRDV 660 (710)
Q Consensus 625 ~v~~~G~v~~Lv~L~~~gt~~~k~kA~~LL~~l~~~ 660 (710)
.+.+.|+++.|+.++.+++.+++..|.++|..+...
T Consensus 367 ~i~~~~~l~~li~~l~~~~~~v~~~a~~~l~nl~~~ 402 (503)
T d1wa5b_ 367 AVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSG 402 (503)
T ss_dssp HHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHccccchhHHhcccCChhHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999998877653
|
| >d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.79 E-value=1.1e-18 Score=188.36 Aligned_cols=263 Identities=13% Similarity=0.108 Sum_probs=226.5
Q ss_pred CCHHHHHHHHHHHHHHHccCcccchhcccCCcHHHHHHHhhccccCCCHHHHHHHHHHHHHHhccC-CCCCccccccchH
Q 036199 393 LNWDCQCKVIEDYETRLEHDNQVSHSLSSTNFVEPLIRFLRDARDLHDSRAQRIGCRLLLAFVSKN-RSGIPYLNEDLFS 471 (710)
Q Consensus 393 ~~~e~q~~Al~~L~~Lak~~~~~r~~I~~~G~I~~LV~lL~s~~~~~d~~~q~~A~~~L~nL~~~~-~~k~~i~~~gaI~ 471 (710)
.+.++|..|++.|..++..+++.+..+.+.|+++.|+.+|.+ ++...++.|+.+|.|++.+. ..+..+.+.|+++
T Consensus 69 ~~~~v~~~a~~~L~~la~~~~~~~~~i~~~~~i~~l~~~L~~----~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~~~ 144 (434)
T d1q1sc_ 69 DCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLAS----PHAHISEQAVWALGNIAGDGSAFRDLVIKHGAID 144 (434)
T ss_dssp GGHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTC----SCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHH
T ss_pred CCHHHHHHHHHHHHHHhcCChhhhhHhhhccchhhhhhcccc----CCHHHHHHHHHHHHHHhccchHHHHHHHHhhhhh
Confidence 357889999999999999988899999999999999999987 78999999999999997654 4456667889999
Q ss_pred HHHHHhccCcHH-------HHHHHHHHHhccCchhhHHH-hhhCcHHHHHHhhcCCCHHHHHHHHHHHHHhccCcc-ccc
Q 036199 472 LLASFLHSAAAT-------EETLAILVALSSYAYFISKI-VASGALASILNMLDSPNGKFQELAIKILHNLSSDVD-IQS 542 (710)
Q Consensus 472 ~LV~lL~s~~~~-------~~Aa~~L~~Ls~~~~nk~~I-~~~GaI~~LV~LL~~~~~~~~~~A~~aL~nLs~~~e-n~~ 542 (710)
.|+.+|...... ..+++++.+++........+ ...++++.|+.++.+++++.+..|+++|.+|+.++. ...
T Consensus 145 ~l~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~ 224 (434)
T d1q1sc_ 145 PLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIE 224 (434)
T ss_dssp HHHHHTCSSCGGGSCHHHHHHHHHHHHHHTCCCTTCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHH
T ss_pred HHHHHHHhcccccchHHHHHHHHHHHHHHhhcccccchhhhhhhHHHHHHHHHhccccchhhhHHhhhcccchhhhhhHH
Confidence 999999876531 36777888888665444333 457889999999999999999999999999998654 455
Q ss_pred ccccccchhchHHhhcC--chHHHHHHHHHHHHhcC-cchHHHHHhhcCChHHHHHHhhcCCHHHHHHHHHHHHHHhcCC
Q 036199 543 HIAPSEFLPKLVPFLKD--ATLAVSCLVILKNMCNT-EHARVCVVETSGCLPSVAELLEIGSEEDQEHAVAILLCLCSQR 619 (710)
Q Consensus 543 ~iv~aG~V~~Lv~lL~~--~~~~~~al~iL~nLa~~-~e~r~~i~~~~g~I~~Lv~lL~~~s~~~ke~A~~aL~~Lc~~~ 619 (710)
.+...|+++.|+.++.+ ..++..|+.+|.+++.+ ++.+..+.+ .|+++.|+.++.+.++..++.|+++|.+++...
T Consensus 225 ~~~~~~~~~~Lv~ll~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~-~~~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~~ 303 (434)
T d1q1sc_ 225 MVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVID-AGALAVFPSLLTNPKTNIQKEATWTMSNITAGR 303 (434)
T ss_dssp HHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHH-TTGGGGHHHHTTCSSHHHHHHHHHHHHHHTTSC
T ss_pred HHhhcccchhcccccccchhhhhhchhhhhhhHHhhhhHHHHHHHh-ccccchHHHhhcccchhhhHHHHHHHhhhcccc
Confidence 66789999999999955 46789999999999984 456677777 799999999999999999999999999999998
Q ss_pred hHHHHHHHhCCchHHHHHHhhcCCHHHHHHHHHHHHHhhhc
Q 036199 620 DQYCKLVMNEGVIPSLVKISVYGNDKAKVSALELRRLLRDV 660 (710)
Q Consensus 620 ~~~~~~v~~~G~v~~Lv~L~~~gt~~~k~kA~~LL~~l~~~ 660 (710)
......+.+.|+++.|+.++.+++...+..|.++|..+...
T Consensus 304 ~~~~~~i~~~~~i~~li~~l~~~~~~v~~~a~~~l~nl~~~ 344 (434)
T d1q1sc_ 304 QDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSG 344 (434)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHSSCHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHhhhhhHHHHHHHHhccChHHHHHHHHHHHHHHhc
Confidence 88889999999999999999999999999999999877654
|
| >d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: beta-Catenin species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.77 E-value=3.4e-18 Score=190.59 Aligned_cols=266 Identities=17% Similarity=0.131 Sum_probs=225.1
Q ss_pred hhhcCCCHHHHHHHHHHHHHHHccCcccchhcccCCcHHHHHHHhhccccCCCHHHHHHHHHHHHHHhcc-CCCCCcccc
Q 036199 388 SRLTELNWDCQCKVIEDYETRLEHDNQVSHSLSSTNFVEPLIRFLRDARDLHDSRAQRIGCRLLLAFVSK-NRSGIPYLN 466 (710)
Q Consensus 388 ~~L~s~~~e~q~~Al~~L~~Lak~~~~~r~~I~~~G~I~~LV~lL~s~~~~~d~~~q~~A~~~L~nL~~~-~~~k~~i~~ 466 (710)
..|.+++.+.|..|++.|..++.+++..+..+.+.|+|+.|+.+|.+ ++..++..++.+|.+++.+ ...+..+..
T Consensus 108 ~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~----~~~~~~~~a~~~L~~l~~~~~~~~~~~~~ 183 (529)
T d1jdha_ 108 KMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNK----TNVKFLAITTDCLQILAYGNQESKLIILA 183 (529)
T ss_dssp HHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGC----CCHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHhCCCCHHHHHHHHHHHHHhhcccchhhhHHHhcCCchHHHHHHHc----cChHHHHHHHHHHHHHhhhhhHHHHHHHh
Confidence 55778889999999999999999999999999999999999999987 7899999999999999754 344566678
Q ss_pred ccchHHHHHHhccCcH---HHHHHHHHHHhccCchhhHHHhhhCcHHHHHHhhcCCCHHHHHHHHHHHHHhccCcccccc
Q 036199 467 EDLFSLLASFLHSAAA---TEETLAILVALSSYAYFISKIVASGALASILNMLDSPNGKFQELAIKILHNLSSDVDIQSH 543 (710)
Q Consensus 467 ~gaI~~LV~lL~s~~~---~~~Aa~~L~~Ls~~~~nk~~I~~~GaI~~LV~LL~~~~~~~~~~A~~aL~nLs~~~en~~~ 543 (710)
.|+++.|+.+|.+... ...+++++.+++.+++++..+.+.|++++|+.++.+++.+.+..|+++|.+++.... ..
T Consensus 184 ~~~~~~L~~ll~~~~~~~~~~~~~~~l~~ls~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~l~~ls~~~~--~~ 261 (529)
T d1jdha_ 184 SGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAAT--KQ 261 (529)
T ss_dssp TTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSTTHHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHHHTTCT--TC
T ss_pred cccchHHHHHHHhhhhHHHHHHHHHHHhhhhccccccchhhhhhhhhhHHHHhcccchhhhhhhhhHHHhcccccc--ch
Confidence 9999999999986653 258899999999999999999999999999999999999999999999999985443 34
Q ss_pred cccccchhchHHhhcC--chHHHHHHHHHHHHhc-CcchHHHHHhhcCChHHHHHHhh--cCCHHHHHHHHHHHHHHhcC
Q 036199 544 IAPSEFLPKLVPFLKD--ATLAVSCLVILKNMCN-TEHARVCVVETSGCLPSVAELLE--IGSEEDQEHAVAILLCLCSQ 618 (710)
Q Consensus 544 iv~aG~V~~Lv~lL~~--~~~~~~al~iL~nLa~-~~e~r~~i~~~~g~I~~Lv~lL~--~~s~~~ke~A~~aL~~Lc~~ 618 (710)
....|+++.|++++.+ ..++..|+.+|++|+. +++++..+.+ .|+++.|+.++. .+++..++.|+.+|.+|+..
T Consensus 262 ~~~~~~i~~Lv~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~-~~~i~~Li~~l~~~~~~~~~~~~a~~aL~~l~~~ 340 (529)
T d1jdha_ 262 EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQ-VGGIEALVRTVLRAGDREDITEPAICALRHLTSR 340 (529)
T ss_dssp SCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHHHHHHHHH-TTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSS
T ss_pred hhhhhcchhhhhhcccccHHHHHHHHHHHHhhccchhHHHHHHHH-hhhHHHHHHHHHhhhcchhHHHHHHHHhhcccch
Confidence 4557999999999954 4678999999999987 5667777777 799999999885 36788999999999999977
Q ss_pred Ch---HHHHHHHhCCchHHHHHHhhcCCH-HHHHHHHHHHHHhhhc
Q 036199 619 RD---QYCKLVMNEGVIPSLVKISVYGND-KAKVSALELRRLLRDV 660 (710)
Q Consensus 619 ~~---~~~~~v~~~G~v~~Lv~L~~~gt~-~~k~kA~~LL~~l~~~ 660 (710)
.. ..+..+...|+++.|+.++..++. ..+..+..+|..+...
T Consensus 341 ~~~~~~~~~~i~~~~~l~~L~~ll~~~~~~~~~~~~~~~l~~l~~~ 386 (529)
T d1jdha_ 341 HQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALC 386 (529)
T ss_dssp STTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHTTS
T ss_pred hhcchhhhhhHHhcccchhHHHHHhccchHHHHHHHHHHHhhcchh
Confidence 63 356677889999999999877654 4566677778777543
|
| >d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Plakophilin 1 helical region domain: Plakophilin 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.77 E-value=4.1e-18 Score=181.29 Aligned_cols=267 Identities=16% Similarity=0.142 Sum_probs=213.1
Q ss_pred hhhcCCCHHHHHHHHHHHHHHHccCcccchhcccCCcHHHHHHHhhccccCCCHHHHHHHHHHHHHHhc-cCCCCCcccc
Q 036199 388 SRLTELNWDCQCKVIEDYETRLEHDNQVSHSLSSTNFVEPLIRFLRDARDLHDSRAQRIGCRLLLAFVS-KNRSGIPYLN 466 (710)
Q Consensus 388 ~~L~s~~~e~q~~Al~~L~~Lak~~~~~r~~I~~~G~I~~LV~lL~s~~~~~d~~~q~~A~~~L~nL~~-~~~~k~~i~~ 466 (710)
..|.++++++|..|+..|..++.+++++|..|.+.|+||.|+++|++ +++++|+.|+.+|.+++. +..++..+.+
T Consensus 9 ~~L~~~~~~~~~~a~~~l~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~----~~~~v~~~a~~aL~~L~~~~~~~~~~i~~ 84 (457)
T d1xm9a1 9 QYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRS----PNQNVQQAAAGALRNLVFRSTTNKLETRR 84 (457)
T ss_dssp HHHHSSCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTS----SCHHHHHHHHHHHHHHHSSCHHHHHHHHH
T ss_pred HHhCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCcHHHHHHHHCC----CCHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 67888999999999999999999999999999999999999999987 789999999999999974 5567778889
Q ss_pred ccchHHHHHHhccCcH---HHHHHHHHHHhcc------------------------------------------------
Q 036199 467 EDLFSLLASFLHSAAA---TEETLAILVALSS------------------------------------------------ 495 (710)
Q Consensus 467 ~gaI~~LV~lL~s~~~---~~~Aa~~L~~Ls~------------------------------------------------ 495 (710)
.|+++.|+.++.+... +..|+++|.+|+.
T Consensus 85 ~g~v~~li~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~a~ 164 (457)
T d1xm9a1 85 QNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNAT 164 (457)
T ss_dssp TTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTHHHHHHHHHHHHHHHTTHHHHTCC---------CCCHHHHHHHH
T ss_pred CCChHHHHHHHhccCcHHHHHHHHHHHHHHHhhhhhHHHHHhcccHHHHHHHHhhhhhhhcchhhhhcccccHHHHHHHH
Confidence 9999999998865432 2455555555543
Q ss_pred --------CchhhHHHh-hhCcHHHHHHhhcC------------------------------------------------
Q 036199 496 --------YAYFISKIV-ASGALASILNMLDS------------------------------------------------ 518 (710)
Q Consensus 496 --------~~~nk~~I~-~~GaI~~LV~LL~~------------------------------------------------ 518 (710)
.++++..+. ..|+++.|+.++.+
T Consensus 165 ~~l~~~~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (457)
T d1xm9a1 165 GCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYTEK 244 (457)
T ss_dssp HHHHHHTTSHHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC-------
T ss_pred HHHHHHhcCchHHHHHHHHhccHHHHHHHHhcchhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhhhhhhhhHH
Confidence 333333333 35677777766521
Q ss_pred ---------------------------------------------------CCHHHHHHHHHHHHHhccCcc------cc
Q 036199 519 ---------------------------------------------------PNGKFQELAIKILHNLSSDVD------IQ 541 (710)
Q Consensus 519 ---------------------------------------------------~~~~~~~~A~~aL~nLs~~~e------n~ 541 (710)
.++..+..+..++.+++.... .+
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~l~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~ 324 (457)
T d1xm9a1 245 SSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSGMSQ 324 (457)
T ss_dssp ---------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHHHHHHH
T ss_pred HhhhhhhhhhHHHHHHHHhhhhHHhhhhhHHHHHHHhhcHHHHHHHHHhcccchHHHHHHHHHHHHHhhccccchHHHHH
Confidence 112234466677777775433 23
Q ss_pred cccccccchhchHHhhcC--chHHHHHHHHHHHHhcCcchHHHHHhhcCChHHHHHHhhc------CCHHHHHHHHHHHH
Q 036199 542 SHIAPSEFLPKLVPFLKD--ATLAVSCLVILKNMCNTEHARVCVVETSGCLPSVAELLEI------GSEEDQEHAVAILL 613 (710)
Q Consensus 542 ~~iv~aG~V~~Lv~lL~~--~~~~~~al~iL~nLa~~~e~r~~i~~~~g~I~~Lv~lL~~------~s~~~ke~A~~aL~ 613 (710)
..+.+.|+++.|+.+|.+ +.++..++.+|.+|+.+++++..+.+ ++++.|+.+|.. .++++++.|+.+|.
T Consensus 325 ~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~l~~La~~~~~~~~i~~--~~i~~li~~L~~~~~~~~~~~~v~~~a~~~L~ 402 (457)
T d1xm9a1 325 LIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHPLLHRVMGN--QVFPEVTRLLTSHTGNTSNSEDILSSACYTVR 402 (457)
T ss_dssp HHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSGGGHHHHHH--HTHHHHHHTTTSCCSCSTTHHHHHHHHHHHHH
T ss_pred HHHHHcCChHHHHhhhcCccHHHHHHHHHHHHHHhhChhHHHHHHH--hhHHHHHHHHhccccCcCCcHHHHHHHHHHHH
Confidence 445678999999999955 56799999999999999999988875 579999999864 34678999999999
Q ss_pred HHhcCChHHHHHHHhCCchHHHHHHhhc-CCHHHHHHHHHHHHHhhhc
Q 036199 614 CLCSQRDQYCKLVMNEGVIPSLVKISVY-GNDKAKVSALELRRLLRDV 660 (710)
Q Consensus 614 ~Lc~~~~~~~~~v~~~G~v~~Lv~L~~~-gt~~~k~kA~~LL~~l~~~ 660 (710)
+|+..++++++.+.+.|+++.|+.++.+ +++++++.|..+|..|-.+
T Consensus 403 ~l~~~~~~~~~~l~~~g~i~~L~~l~~~~~~~~~~~aA~~~L~~L~~~ 450 (457)
T d1xm9a1 403 NLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDMWSS 450 (457)
T ss_dssp HHHTTCTHHHHHHCCHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTSSS
T ss_pred HHhcCCHHHHHHHHHCCCHHHHHHHHhCCCCHHHHHHHHHHHHHHHcC
Confidence 9999988999999999999999999876 5789999999999988443
|
| >d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HspBP1 domain domain: Hsp70-binding protein 1 (HspBP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.65 E-value=5.9e-16 Score=157.62 Aligned_cols=175 Identities=14% Similarity=0.132 Sum_probs=158.7
Q ss_pred HHHHHHHHHhccCchhhHHHhhhCcHHHHHH-hhcCCCHHHHHHHHHHHHHhccC-cccccccccccchhchHHhhc---
Q 036199 484 EETLAILVALSSYAYFISKIVASGALASILN-MLDSPNGKFQELAIKILHNLSSD-VDIQSHIAPSEFLPKLVPFLK--- 558 (710)
Q Consensus 484 ~~Aa~~L~~Ls~~~~nk~~I~~~GaI~~LV~-LL~~~~~~~~~~A~~aL~nLs~~-~en~~~iv~aG~V~~Lv~lL~--- 558 (710)
..|+.+|.+|+.+.+|+..+...|++++|+. ++.+++++++..|+.+|.+++.+ +.++..+++.|+||+|+.+|.
T Consensus 35 ~~Al~~L~~L~~~~d~a~~l~~~gg~~~ll~~ll~s~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~~i~~Lv~lL~~~~ 114 (264)
T d1xqra1 35 EGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDA 114 (264)
T ss_dssp HHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHcCHHHHHHHHHcCCHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHhhcCC
Confidence 5789999999999999999999999999986 77899999999999999999975 567778889999999999994
Q ss_pred CchHHHHHHHHHHHHhc-CcchHHHHHhhcCChHHHHHHhhcCCHHHHHHHHHHHHHHhcCChHHHHHHHhCCchHHHHH
Q 036199 559 DATLAVSCLVILKNMCN-TEHARVCVVETSGCLPSVAELLEIGSEEDQEHAVAILLCLCSQRDQYCKLVMNEGVIPSLVK 637 (710)
Q Consensus 559 ~~~~~~~al~iL~nLa~-~~e~r~~i~~~~g~I~~Lv~lL~~~s~~~ke~A~~aL~~Lc~~~~~~~~~v~~~G~v~~Lv~ 637 (710)
++.+...|+.+|.+|+. ++.++..+.. .|+++.|+.+|.++++..+.+|+++|.+++..++..+..+.+.|+++.|+.
T Consensus 115 ~~~v~~~a~~aL~~l~~~~~~~~~~~~~-~~gi~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~v~~L~~ 193 (264)
T d1xqra1 115 CDTVRVKALFAISCLVREQEAGLLQFLR-LDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLVA 193 (264)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHH-TTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhccchhhHHHHHH-hhhhhHHHHHHhcCchHHHHHHHHHHHHHHhccHHHHHHHHHhhhHHHHHH
Confidence 24678999999999997 5667777777 799999999999999999999999999999988889999999999999999
Q ss_pred HhhcCCHHHHHHHHHHHHHhhh
Q 036199 638 ISVYGNDKAKVSALELRRLLRD 659 (710)
Q Consensus 638 L~~~gt~~~k~kA~~LL~~l~~ 659 (710)
++.++++..++.|...|..|..
T Consensus 194 lL~~~~~~~~~~a~~aL~~L~~ 215 (264)
T d1xqra1 194 LVRTEHSPFHEHVLGALCSLVT 215 (264)
T ss_dssp HHTSCCSTHHHHHHHHHHHHHT
T ss_pred HHcCCCHHHHHHHHHHHHHHHh
Confidence 9999999999999999987753
|
| >d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Plakophilin 1 helical region domain: Plakophilin 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.63 E-value=4.2e-15 Score=157.65 Aligned_cols=233 Identities=16% Similarity=0.196 Sum_probs=178.5
Q ss_pred CcHHHHHHHhhccccCCCHHHHHHHHHHHHHHhc-cCCCCCccccccchHHHHHHhccCcH--HHHHHHHHHHhc-cCch
Q 036199 423 NFVEPLIRFLRDARDLHDSRAQRIGCRLLLAFVS-KNRSGIPYLNEDLFSLLASFLHSAAA--TEETLAILVALS-SYAY 498 (710)
Q Consensus 423 G~I~~LV~lL~s~~~~~d~~~q~~A~~~L~nL~~-~~~~k~~i~~~gaI~~LV~lL~s~~~--~~~Aa~~L~~Ls-~~~~ 498 (710)
+.||.||++|++ +|+++|..|+.+|.|++. ++++|..+.+.|+||.|+++|++++. +..|+++|.+|+ .+++
T Consensus 2 ~~ip~lv~~L~~----~~~~~~~~a~~~l~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~ 77 (457)
T d1xm9a1 2 LTIPKAVQYLSS----QDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTT 77 (457)
T ss_dssp CCHHHHHHHHHS----SCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHH
T ss_pred CCHHHHHHHhCC----CCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCcHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHH
Confidence 469999999988 799999999999999964 67789999999999999999998876 369999999999 5678
Q ss_pred hhHHHhhhCcHHHHHHhhc-CCCHHHHHHHHHHHHHhccCcccccccccccchhchHHhh------------------cC
Q 036199 499 FISKIVASGALASILNMLD-SPNGKFQELAIKILHNLSSDVDIQSHIAPSEFLPKLVPFL------------------KD 559 (710)
Q Consensus 499 nk~~I~~~GaI~~LV~LL~-~~~~~~~~~A~~aL~nLs~~~en~~~iv~aG~V~~Lv~lL------------------~~ 559 (710)
++..+.+.|+++.|+.++. ..+++.+..|+++|.+|+.++.++......|+ +.++..+ .+
T Consensus 78 ~~~~i~~~g~v~~li~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~ 156 (457)
T d1xm9a1 78 NKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELIADAL-PVLADRVIIPFSGWCDGNSNMSREVVD 156 (457)
T ss_dssp HHHHHHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTHHHHHHHHH-HHHHHHTTHHHHTCC---------CCC
T ss_pred HHHHHHHCCChHHHHHHHhccCcHHHHHHHHHHHHHHHhhhhhHHHHHhccc-HHHHHHHHhhhhhhhcchhhhhccccc
Confidence 9999999999999999885 46788999999999999987766655554333 3332222 01
Q ss_pred chHHHHHHHHHHHHhcCcchHHHHHhhcCChHHHH---------------------------------------------
Q 036199 560 ATLAVSCLVILKNMCNTEHARVCVVETSGCLPSVA--------------------------------------------- 594 (710)
Q Consensus 560 ~~~~~~al~iL~nLa~~~e~r~~i~~~~g~I~~Lv--------------------------------------------- 594 (710)
..+...++.+|.+++.+++++..+....|+++.|+
T Consensus 157 ~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 236 (457)
T d1xm9a1 157 PEVFFNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYN 236 (457)
T ss_dssp HHHHHHHHHHHHHHTTSHHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhcCchHHHHHHHHhccHHHHHHHHhcchhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhh
Confidence 23456666666666666555555444334444443
Q ss_pred -----------------------------------------------------HHhhc-CCHHHHHHHHHHHHHHhcCCh
Q 036199 595 -----------------------------------------------------ELLEI-GSEEDQEHAVAILLCLCSQRD 620 (710)
Q Consensus 595 -----------------------------------------------------~lL~~-~s~~~ke~A~~aL~~Lc~~~~ 620 (710)
.++.. .++..++.+++++..++....
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~l~~~~~~~~~~~~~~~~l~~l~~~~~ 316 (457)
T d1xm9a1 237 ARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKG 316 (457)
T ss_dssp C----------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSS
T ss_pred hhhhhhHHHhhhhhhhhhHHHHHHHHhhhhHHhhhhhHHHHHHHhhcHHHHHHHHHhcccchHHHHHHHHHHHHHhhccc
Confidence 33332 356677888888888886552
Q ss_pred -----HHHHHHHhCCchHHHHHHhhcCCHHHHHHHHHHHHHhhhc
Q 036199 621 -----QYCKLVMNEGVIPSLVKISVYGNDKAKVSALELRRLLRDV 660 (710)
Q Consensus 621 -----~~~~~v~~~G~v~~Lv~L~~~gt~~~k~kA~~LL~~l~~~ 660 (710)
..+..+.+.|+++.|+.++.++++.++..|..+|..|...
T Consensus 317 ~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~l~~La~~ 361 (457)
T d1xm9a1 317 LMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRH 361 (457)
T ss_dssp SHHHHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTS
T ss_pred cchHHHHHHHHHHcCChHHHHhhhcCccHHHHHHHHHHHHHHhhC
Confidence 1355667889999999999999999999999999988754
|
| >d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HspBP1 domain domain: Hsp70-binding protein 1 (HspBP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.63 E-value=1.1e-15 Score=155.59 Aligned_cols=191 Identities=16% Similarity=0.179 Sum_probs=163.9
Q ss_pred CCHHHHHHHHHHHHHHhccCCCCCccccccchHHHHH-HhccCcHH--HHHHHHHHHhcc-CchhhHHHhhhCcHHHHHH
Q 036199 439 HDSRAQRIGCRLLLAFVSKNRSGIPYLNEDLFSLLAS-FLHSAAAT--EETLAILVALSS-YAYFISKIVASGALASILN 514 (710)
Q Consensus 439 ~d~~~q~~A~~~L~nL~~~~~~k~~i~~~gaI~~LV~-lL~s~~~~--~~Aa~~L~~Ls~-~~~nk~~I~~~GaI~~LV~ 514 (710)
.|.+.+..|+.+|.+++.+..++..+...|+++.|+. +|++++.. ..|+.+|.+++. ++.++..+.+.|+||+|+.
T Consensus 29 ~~~~~~~~Al~~L~~L~~~~d~a~~l~~~gg~~~ll~~ll~s~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~~i~~Lv~ 108 (264)
T d1xqra1 29 ADQQEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLR 108 (264)
T ss_dssp HHHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHcCHHHHHHHHHcCCHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHH
Confidence 4577888999999999877666667778999999886 77777753 699999999996 5678888889999999999
Q ss_pred hhc-CCCHHHHHHHHHHHHHhccC-cccccccccccchhchHHhhcC--chHHHHHHHHHHHHhc-CcchHHHHHhhcCC
Q 036199 515 MLD-SPNGKFQELAIKILHNLSSD-VDIQSHIAPSEFLPKLVPFLKD--ATLAVSCLVILKNMCN-TEHARVCVVETSGC 589 (710)
Q Consensus 515 LL~-~~~~~~~~~A~~aL~nLs~~-~en~~~iv~aG~V~~Lv~lL~~--~~~~~~al~iL~nLa~-~~e~r~~i~~~~g~ 589 (710)
+|. ..++.++..|+.+|.+|+.+ +.++..++..|+++.|+.+|.+ ..+...++.+|.+|+. .++.+..+.. .|+
T Consensus 109 lL~~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~gi~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~-~~~ 187 (264)
T d1xqra1 109 LLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCS-MGM 187 (264)
T ss_dssp HHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHH-TTH
T ss_pred HhhcCCCHHHHHHHHHHHHHHhccchhhHHHHHHhhhhhHHHHHHhcCchHHHHHHHHHHHHHHhccHHHHHHHHH-hhh
Confidence 995 56789999999999999974 5677788899999999999954 5678999999999986 6788888888 799
Q ss_pred hHHHHHHhhcCCHHHHHHHHHHHHHHhcCChHHHHHHHhCC
Q 036199 590 LPSVAELLEIGSEEDQEHAVAILLCLCSQRDQYCKLVMNEG 630 (710)
Q Consensus 590 I~~Lv~lL~~~s~~~ke~A~~aL~~Lc~~~~~~~~~v~~~G 630 (710)
++.|+.+|.++++..++.|+++|.+|+..++.....+...+
T Consensus 188 v~~L~~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~~~ 228 (264)
T d1xqra1 188 VQQLVALVRTEHSPFHEHVLGALCSLVTDFPQGVRECREPE 228 (264)
T ss_dssp HHHHHHHHTSCCSTHHHHHHHHHHHHHTTCHHHHHHHHCGG
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHhh
Confidence 99999999999999999999999999998877666666544
|
| >d2baya1 g.44.1.2 (A:1-56) Pre-mRNA splicing factor Prp19 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Small proteins fold: RING/U-box superfamily: RING/U-box family: U-box domain: Pre-mRNA splicing factor Prp19 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.43 E-value=1.3e-14 Score=111.80 Aligned_cols=52 Identities=19% Similarity=0.360 Sum_probs=47.3
Q ss_pred ccccCCccccCCceec-CCCCccchhhHHHHhhhCCCCCCCCCCccCCCCCccc
Q 036199 269 FKCPLSLRLMYDPVVI-ESGQTFERMWIQKWFEEGNHTCPKTKMKLVCQSLTPN 321 (710)
Q Consensus 269 f~CPI~~~~m~DPV~~-~~G~ty~r~~I~~w~~~g~~~cP~t~~~l~~~~l~pN 321 (710)
+.||||+++|+|||++ .|||+|||.||++|+.+ +.+||.|++++...+|+|.
T Consensus 1 l~C~Ic~~~~~~Pv~~~~cGh~fc~~cI~~~l~~-~~~CP~c~~~l~~~dLipi 53 (56)
T d2baya1 1 MLCAISGKVPRRPVLSPKSRTIFEKSLLEQYVKD-TGNDPITNEPLSIEEIVEI 53 (56)
T ss_dssp CCCTTTCSCCSSEEEETTTTEEEEHHHHHHHHHH-HSBCTTTCCBCCGGGCEEC
T ss_pred CCCccCCchHHhcCccCCCCCcccHHHHHHHHhh-ccCCCccCCcCCHHhceeC
Confidence 4799999999999988 69999999999999986 5689999999999888874
|
| >d1rmda2 g.44.1.1 (A:1-86) V(D)J recombination activating protein 1 (RAG1), dimerization domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Small proteins fold: RING/U-box superfamily: RING/U-box family: RING finger domain, C3HC4 domain: V(D)J recombination activating protein 1 (RAG1), dimerization domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.41 E-value=7.7e-14 Score=116.62 Aligned_cols=62 Identities=18% Similarity=0.398 Sum_probs=54.4
Q ss_pred CcccccCCccccCCceecCCCCccchhhHHHHhhhCCCCCCCCCCccCCCCCc-ccHHHHHHH
Q 036199 267 EVFKCPLSLRLMYDPVVIESGQTFERMWIQKWFEEGNHTCPKTKMKLVCQSLT-PNTAMKDLI 328 (710)
Q Consensus 267 ~~f~CPI~~~~m~DPV~~~~G~ty~r~~I~~w~~~g~~~cP~t~~~l~~~~l~-pN~~l~~~i 328 (710)
++|.||||+++|.|||+++|||+||+.||++|++.++.+||.|+.++...++. |..++.+.+
T Consensus 22 ~~l~C~IC~~~~~~pv~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~p~~~~~l~~P~~~~l~~l 84 (86)
T d1rmda2 22 KSISCQICEHILADPVETSCKHLFCRICILRCLKVMGSYCPSCRYPCFPTDLESPVKSFLNIL 84 (86)
T ss_dssp HHTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCBCCCHHHHHHH
T ss_pred cCcCCccCCcchhcceecCCCChhhHHHHHHHHhhCCCcCcccCCCCChhhccCHHHHHHHHh
Confidence 34689999999999999999999999999999988888999999999877765 677776654
|
| >d1jm7a_ g.44.1.1 (A:) brca1 RING domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: RING/U-box superfamily: RING/U-box family: RING finger domain, C3HC4 domain: brca1 RING domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.38 E-value=5.9e-14 Score=122.29 Aligned_cols=68 Identities=24% Similarity=0.533 Sum_probs=59.9
Q ss_pred CCcccccCCccccCCceecCCCCccchhhHHHHhhh--CCCCCCCCCCccCCCCCcccHHHHHHHHHHHH
Q 036199 266 PEVFKCPLSLRLMYDPVVIESGQTFERMWIQKWFEE--GNHTCPKTKMKLVCQSLTPNTAMKDLISKWCM 333 (710)
Q Consensus 266 p~~f~CPI~~~~m~DPV~~~~G~ty~r~~I~~w~~~--g~~~cP~t~~~l~~~~l~pN~~l~~~i~~w~~ 333 (710)
-+.|.||||+++|.|||+++|||+||+.||.+|+.. +...||.|++++....+.||..++++|+++..
T Consensus 19 ~~~l~CpIC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~l~~n~~l~~~ve~l~~ 88 (103)
T d1jm7a_ 19 QKILECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRSLQESTRFSQLVEELLK 88 (103)
T ss_dssp HHHTSCSSSCCCCSSCCBCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCTTTCBCCCSSSHHHHHHHH
T ss_pred ccCcCCCccCchhCCeEEcCCCCchhhHHHHHHHHHCCCCCcCcCCCCcCChhhCCcCHHHHHHHHHHHH
Confidence 346889999999999999999999999999999964 34689999999999999999988888887743
|
| >d1jm7b_ g.44.1.1 (B:) bard1 RING domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: RING/U-box superfamily: RING/U-box family: RING finger domain, C3HC4 domain: bard1 RING domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.35 E-value=1.3e-13 Score=118.73 Aligned_cols=67 Identities=15% Similarity=0.306 Sum_probs=60.0
Q ss_pred CCCCcccccCCccccCCceec-CCCCccchhhHHHHhhhCCCCCCCCCCccCCCCCcccHHHHHHHHHHHH
Q 036199 264 IIPEVFKCPLSLRLMYDPVVI-ESGQTFERMWIQKWFEEGNHTCPKTKMKLVCQSLTPNTAMKDLISKWCM 333 (710)
Q Consensus 264 ~~p~~f~CPI~~~~m~DPV~~-~~G~ty~r~~I~~w~~~g~~~cP~t~~~l~~~~l~pN~~l~~~i~~w~~ 333 (710)
.+.+.|.||||+++|.|||++ +|||+||+.||.+|+. ..||.|+.++....+.||..|..+|+.+..
T Consensus 18 ~l~~~l~C~IC~~~~~~pv~~~~CgH~fC~~Ci~~~~~---~~CP~Cr~~~~~~~l~~n~~l~~lv~~~~~ 85 (97)
T d1jm7b_ 18 RLEKLLRCSRCTNILREPVCLGGCEHIFCSNCVSDCIG---TGCPVCYTPAWIQDLKINRQLDSMIQLCSK 85 (97)
T ss_dssp HHHHTTSCSSSCSCCSSCBCCCSSSCCBCTTTGGGGTT---TBCSSSCCBCSCSSCCCCHHHHHHHHHHHH
T ss_pred hhhhcCCCccCCchhhcCceeCCCCCchhHHHHHHHHh---ccccccCCcCchhhCcccHHHHHHHHHHHH
Confidence 346778999999999999986 8999999999999985 359999999999999999999999988754
|
| >d1fbva4 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: RING/U-box superfamily: RING/U-box family: RING finger domain, C3HC4 domain: CBL species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.12 E-value=2.1e-11 Score=100.31 Aligned_cols=50 Identities=14% Similarity=0.266 Sum_probs=45.7
Q ss_pred cccccCCccccCCceecCCCCccchhhHHHHhhhCCCCCCCCCCccCCCC
Q 036199 268 VFKCPLSLRLMYDPVVIESGQTFERMWIQKWFEEGNHTCPKTKMKLVCQS 317 (710)
Q Consensus 268 ~f~CPI~~~~m~DPV~~~~G~ty~r~~I~~w~~~g~~~cP~t~~~l~~~~ 317 (710)
...||||++.+.|||+++|||+||+.||.+|+..++.+||.|++.+....
T Consensus 23 ~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~wl~~~~~~CP~Cr~~i~~~~ 72 (79)
T d1fbva4 23 FQLCKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKGTE 72 (79)
T ss_dssp TTBCTTTSSSBCCEECSSSCCEECHHHHHHHHHTTCCSCTTTCCCCCCCC
T ss_pred CCCCccCCCcCCCeEEeCCCCeeeHHHHHHHHHHCcCcCCCCCcCccCCc
Confidence 35699999999999999999999999999999877889999999987654
|
| >d1bora_ g.44.1.1 (A:) Acute promyelocytic leukaemia proto-oncoprotein PML {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: RING/U-box superfamily: RING/U-box family: RING finger domain, C3HC4 domain: Acute promyelocytic leukaemia proto-oncoprotein PML species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.90 E-value=1.8e-10 Score=87.87 Aligned_cols=49 Identities=14% Similarity=0.179 Sum_probs=42.9
Q ss_pred cccccCCccccCCceecCCCCccchhhHHHHhhhCCCCCCCCCCccCCCCCcc
Q 036199 268 VFKCPLSLRLMYDPVVIESGQTFERMWIQKWFEEGNHTCPKTKMKLVCQSLTP 320 (710)
Q Consensus 268 ~f~CPI~~~~m~DPV~~~~G~ty~r~~I~~w~~~g~~~cP~t~~~l~~~~l~p 320 (710)
.+.||||++.|.|||+++|||+|++.||++| ..+||.|+++++...-.|
T Consensus 6 ~l~C~IC~~~~~~p~~lpCgH~fC~~Ci~~~----~~~CP~Cr~~~~~~~~~~ 54 (56)
T d1bora_ 6 FLRCQQCQAEAKCPKLLPCLHTLCSGCLEAS----GMQCPICQAPWPLGADTP 54 (56)
T ss_dssp CSSCSSSCSSCBCCSCSTTSCCSBTTTCSSS----SSSCSSCCSSSSCCSSCC
T ss_pred CCCCcccCcccCCCEEecCCCHHhHHHHHcC----CCcCcCCCCcccCCCCCC
Confidence 4689999999999999999999999999877 567999999987665444
|
| >d1g25a_ g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: RING/U-box superfamily: RING/U-box family: RING finger domain, C3HC4 domain: TFIIH Mat1 subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.80 E-value=9.1e-10 Score=86.81 Aligned_cols=52 Identities=21% Similarity=0.349 Sum_probs=43.5
Q ss_pred CcccccCCccccCCc-----eecCCCCccchhhHHHHhhhCCCCCCCCCCccCCCCC
Q 036199 267 EVFKCPLSLRLMYDP-----VVIESGQTFERMWIQKWFEEGNHTCPKTKMKLVCQSL 318 (710)
Q Consensus 267 ~~f~CPI~~~~m~DP-----V~~~~G~ty~r~~I~~w~~~g~~~cP~t~~~l~~~~l 318 (710)
++..||||++.+..+ ++++|||+|++.||++||..++.+||.|++++....+
T Consensus 2 dd~~CpIC~~~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~~CP~CR~~i~~~~~ 58 (65)
T d1g25a_ 2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRKSNF 58 (65)
T ss_dssp CTTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCSSCCC
T ss_pred CCCCCCcCCceeecCCceEEEeCccChHhhHHHHHHHhCcCcCCCCCCCcCcccccc
Confidence 567899999876433 5679999999999999998888889999999876544
|
| >d1chca_ g.44.1.1 (A:) Immediate early protein, IEEHV {Equine herpesvirus 1 [TaxId: 10326]} | Back information, alignment and structure |
|---|
class: Small proteins fold: RING/U-box superfamily: RING/U-box family: RING finger domain, C3HC4 domain: Immediate early protein, IEEHV species: Equine herpesvirus 1 [TaxId: 10326]
Probab=98.66 E-value=6.7e-09 Score=82.47 Aligned_cols=43 Identities=26% Similarity=0.545 Sum_probs=38.8
Q ss_pred ccCCccccCCcee-cCCCCccchhhHHHHhhhCCCCCCCCCCccC
Q 036199 271 CPLSLRLMYDPVV-IESGQTFERMWIQKWFEEGNHTCPKTKMKLV 314 (710)
Q Consensus 271 CPI~~~~m~DPV~-~~~G~ty~r~~I~~w~~~g~~~cP~t~~~l~ 314 (710)
||||++.|.+|++ ++|||+|+..||++|+.. +.+||.|++++.
T Consensus 8 C~IC~~~~~~~~~~~~C~H~Fc~~Ci~~w~~~-~~~CP~CR~~i~ 51 (68)
T d1chca_ 8 CPICLEDPSNYSMALPCLHAFCYVCITRWIRQ-NPTCPLCKVPVE 51 (68)
T ss_dssp CSSCCSCCCSCEEETTTTEEESTTHHHHHHHH-SCSTTTTCCCCC
T ss_pred CccCCcCccCCcEEeCCCCcCcHHHHHHHHHh-CCcCCCCCcchH
Confidence 9999999999866 699999999999999986 568999998765
|
| >d1ur6b_ g.44.1.1 (B:) Not-4 N-terminal RING finger domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: RING/U-box superfamily: RING/U-box family: RING finger domain, C3HC4 domain: Not-4 N-terminal RING finger domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.49 E-value=3.2e-08 Score=74.04 Aligned_cols=46 Identities=17% Similarity=0.272 Sum_probs=39.4
Q ss_pred cccCCccccCC----ceecCCCCccchhhHHHHhhhCCCCCCCCCCccCC
Q 036199 270 KCPLSLRLMYD----PVVIESGQTFERMWIQKWFEEGNHTCPKTKMKLVC 315 (710)
Q Consensus 270 ~CPI~~~~m~D----PV~~~~G~ty~r~~I~~w~~~g~~~cP~t~~~l~~ 315 (710)
.||||++-|.+ +++++|||+|++.||.+|+..++.+||.|++++..
T Consensus 2 eCpICl~~~~~~~~~~~~~~CgH~~c~~C~~~w~~~~~~~CP~CR~~~~~ 51 (52)
T d1ur6b_ 2 ECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPE 51 (52)
T ss_dssp EETTTTEECCGGGTTCCSSSSSCCCCHHHHHHHTTTSCCBCTTTCCBCSC
T ss_pred CCcCCChhhhCCCceEEecCCCCccchHHHHHHHhhcCCCCCccCCcCCC
Confidence 59999998854 34458999999999999999777889999998864
|
| >d1iyma_ g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 4530]} | Back information, alignment and structure |
|---|
class: Small proteins fold: RING/U-box superfamily: RING/U-box family: RING finger domain, C3HC4 domain: EL5 RING-H2 domain species: Rice (Oryza sativa) [TaxId: 4530]
Probab=98.39 E-value=1e-07 Score=72.07 Aligned_cols=47 Identities=19% Similarity=0.533 Sum_probs=39.1
Q ss_pred CCcccccCCccccCCc---eec-CCCCccchhhHHHHhhhCCCCCCCCCCcc
Q 036199 266 PEVFKCPLSLRLMYDP---VVI-ESGQTFERMWIQKWFEEGNHTCPKTKMKL 313 (710)
Q Consensus 266 p~~f~CPI~~~~m~DP---V~~-~~G~ty~r~~I~~w~~~g~~~cP~t~~~l 313 (710)
-++..||||++-|.+. +.+ .|||+|...||.+|+.. +.+||.|++++
T Consensus 3 ed~~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~Wl~~-~~~CP~CR~~i 53 (55)
T d1iyma_ 3 DDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGS-HSTCPLCRLTV 53 (55)
T ss_dssp CCSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTT-CCSCSSSCCCS
T ss_pred CCCCCCeEECccccCCCEEEEeCCCCCcccHHHHHHHHHh-CCcCCCCCCEe
Confidence 3567799999999763 344 69999999999999985 77899999865
|
| >d1v87a_ g.44.1.1 (A:) Deltex protein 2 RING-H2 domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Small proteins fold: RING/U-box superfamily: RING/U-box family: RING finger domain, C3HC4 domain: Deltex protein 2 RING-H2 domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.16 E-value=6.3e-07 Score=78.26 Aligned_cols=51 Identities=12% Similarity=0.260 Sum_probs=41.3
Q ss_pred CCCcccccCCccccCCc------------------eecCCCCccchhhHHHHhhh----CCCCCCCCCCccCC
Q 036199 265 IPEVFKCPLSLRLMYDP------------------VVIESGQTFERMWIQKWFEE----GNHTCPKTKMKLVC 315 (710)
Q Consensus 265 ~p~~f~CPI~~~~m~DP------------------V~~~~G~ty~r~~I~~w~~~----g~~~cP~t~~~l~~ 315 (710)
.+.+..||||++-|.+| .+++|||.|+..||.+|+.. ++.+||.|+.++..
T Consensus 22 ~~~~~~C~IC~e~l~~~~~~~~~~~~~~~~~~~~~~~~~CgH~FH~~Ci~~Wl~~~~~~~~~~CP~CR~~~~~ 94 (114)
T d1v87a_ 22 VAPEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGE 94 (114)
T ss_dssp SCCSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSS
T ss_pred ccccccccchhheecccccccccccccccccccceEECCCCChhhHHHHHHHHHhcCcCCCCccccccchhcc
Confidence 44566799999998765 35789999999999999974 45689999987643
|
| >d1vyxa_ g.44.1.3 (A:) IE1B protein (ORF K3), N-terminal domain {Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]} | Back information, alignment and structure |
|---|
class: Small proteins fold: RING/U-box superfamily: RING/U-box family: Variant RING domain domain: IE1B protein (ORF K3), N-terminal domain species: Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]
Probab=97.98 E-value=2e-06 Score=65.89 Aligned_cols=48 Identities=15% Similarity=0.281 Sum_probs=41.7
Q ss_pred CcccccCCccccCCceecCCC-----CccchhhHHHHhh-hCCCCCCCCCCccC
Q 036199 267 EVFKCPLSLRLMYDPVVIESG-----QTFERMWIQKWFE-EGNHTCPKTKMKLV 314 (710)
Q Consensus 267 ~~f~CPI~~~~m~DPV~~~~G-----~ty~r~~I~~w~~-~g~~~cP~t~~~l~ 314 (710)
+...|+||++-+.+|.+.+++ |.|.+.||++|+. +++.+||.|++++.
T Consensus 5 d~~~C~IC~~~~~~~~~~~c~c~~c~h~~H~~Cl~~W~~~~~~~~CP~Cr~~~~ 58 (60)
T d1vyxa_ 5 DVPVCWICNEELGNERFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYN 58 (60)
T ss_dssp SCCEETTTTEECSCCCCCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred CCCCCccCCccCCCceeEecccCCCCCEEcHHHHHHHHhhCCCCCCcccCCeee
Confidence 446799999999999888764 9999999999997 47889999998865
|
| >d3dplr1 g.44.1.1 (R:19-106) RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: RING/U-box superfamily: RING/U-box family: RING finger domain, C3HC4 domain: RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.70 E-value=1e-05 Score=66.98 Aligned_cols=32 Identities=16% Similarity=0.373 Sum_probs=27.7
Q ss_pred eecCCCCccchhhHHHHhhhCCCCCCCCCCccC
Q 036199 282 VVIESGQTFERMWIQKWFEEGNHTCPKTKMKLV 314 (710)
Q Consensus 282 V~~~~G~ty~r~~I~~w~~~g~~~cP~t~~~l~ 314 (710)
++++|||.|...||.+|+.. +.+||.|++++.
T Consensus 53 ~~~~C~H~FH~~Ci~~Wl~~-~~~CP~CR~~~~ 84 (88)
T d3dplr1 53 AWGVCNHAFHFHCISRWLKT-RQVCPLDNREWE 84 (88)
T ss_dssp EEETTSCEEEHHHHHHHHTT-CSBCSSSCSBCC
T ss_pred EEccccCcccHHHHHHHHHH-CCcCCCCCCccc
Confidence 44689999999999999985 678999998764
|
| >d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.54 E-value=0.00085 Score=73.07 Aligned_cols=244 Identities=9% Similarity=0.059 Sum_probs=155.6
Q ss_pred CCHHHHHHHHHHHHHHHcc--CcccchhcccCCcHHHHHHHhhccccCCCHHHHHHHHHHHHHHhccCCCCCccccccch
Q 036199 393 LNWDCQCKVIEDYETRLEH--DNQVSHSLSSTNFVEPLIRFLRDARDLHDSRAQRIGCRLLLAFVSKNRSGIPYLNEDLF 470 (710)
Q Consensus 393 ~~~e~q~~Al~~L~~Lak~--~~~~r~~I~~~G~I~~LV~lL~s~~~~~d~~~q~~A~~~L~nL~~~~~~k~~i~~~gaI 470 (710)
.+.+++..+++.|..+... ++++. ...++.+..++.. .+..++..|+.+|..+....... .+..-.+
T Consensus 60 ~~~ev~~~~~~~l~~~~~~~~~~~~~-----~~ll~~l~~l~~~----~~~~Vr~~a~~~l~~i~~~~~~~--~~~~~l~ 128 (588)
T d1b3ua_ 60 DEDEVLLALAEQLGTFTTLVGGPEYV-----HCLLPPLESLATV----EETVVRDKAVESLRAISHEHSPS--DLEAHFV 128 (588)
T ss_dssp CCHHHHHHHHHHHTTCSGGGTSGGGG-----GGGHHHHHHHTTS----SCHHHHHHHHHHHHHHHTTSCHH--HHHHTHH
T ss_pred CcHHHHHHHHHHHHHHHHHcCChhHH-----HHHHHHHHHHccC----CCHHHHHHHHHHHHHHHHhCCHH--HHHHHHH
Confidence 3455555555555433321 11111 2345566666655 68899999999999986543211 1223345
Q ss_pred HHHHHHhccCcHH--HHHHHHHHHhccC--chhhHHHhhhCcHHHHHHhhcCCCHHHHHHHHHHHHHhccCccccccccc
Q 036199 471 SLLASFLHSAAAT--EETLAILVALSSY--AYFISKIVASGALASILNMLDSPNGKFQELAIKILHNLSSDVDIQSHIAP 546 (710)
Q Consensus 471 ~~LV~lL~s~~~~--~~Aa~~L~~Ls~~--~~nk~~I~~~GaI~~LV~LL~~~~~~~~~~A~~aL~nLs~~~en~~~iv~ 546 (710)
|.+..+.++.... ..|+..+..+... +..+. ..++.+..++.+.++.+++.|+.++..++..-... ...
T Consensus 129 p~i~~L~~~~~~~~r~~a~~ll~~~~~~~~~~~~~-----~l~~~~~~l~~D~~~~VR~~a~~~l~~~~~~~~~~--~~~ 201 (588)
T d1b3ua_ 129 PLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVKA-----ELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELD--NVK 201 (588)
T ss_dssp HHHHHHHTCSSHHHHHHHGGGHHHHTTTSCHHHHH-----HHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTSCHH--HHH
T ss_pred HHHHHHhcccchHHHHHHHHHHHHHHHHhhHHHHH-----HHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcHH--HHH
Confidence 5555666655432 3455555555432 22222 34788888999999999999999999998643221 223
Q ss_pred ccchhchHHhhcCc--hHHHHHHHHHHHHhcCcchHHHHHhhcCChHHHHHHhhcCCHHHHHHHHHHHHHHhcCChHHHH
Q 036199 547 SEFLPKLVPFLKDA--TLAVSCLVILKNMCNTEHARVCVVETSGCLPSVAELLEIGSEEDQEHAVAILLCLCSQRDQYCK 624 (710)
Q Consensus 547 aG~V~~Lv~lL~~~--~~~~~al~iL~nLa~~~e~r~~i~~~~g~I~~Lv~lL~~~s~~~ke~A~~aL~~Lc~~~~~~~~ 624 (710)
...++.|..++.++ .++..|+.+|..++..-... ... ...++.+..++...+..++..++.+|..++..-..
T Consensus 202 ~~l~~~l~~l~~d~~~~vr~~a~~~l~~i~~~~~~~-~~~--~~i~~~l~~~~~D~~~~Vr~~~~~~l~~l~~~~~~--- 275 (588)
T d1b3ua_ 202 SEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQE-DLE--ALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGP--- 275 (588)
T ss_dssp HTHHHHHHHHHTCSCHHHHTTHHHHHHHHHHHSCHH-HHH--HHTHHHHHHHHTCSSHHHHHHHHHTHHHHHHHHCH---
T ss_pred HHHHHHHHHHhcCCchhhHHHHHHHHHHhhccCCHH-HHH--HHHHHHHHHhcccccHHHHHHHHHhHHHHHHHhhh---
Confidence 45566677777664 45777888888887532111 111 23578888888889999999999999998754321
Q ss_pred HHHhCCchHHHHHHhhcCCHHHHHHHHHHHHHhhhc
Q 036199 625 LVMNEGVIPSLVKISVYGNDKAKVSALELRRLLRDV 660 (710)
Q Consensus 625 ~v~~~G~v~~Lv~L~~~gt~~~k~kA~~LL~~l~~~ 660 (710)
......+++.+..++.+..+.+|..|...|..+...
T Consensus 276 ~~~~~~l~~~l~~ll~d~~~~vr~~a~~~l~~~~~~ 311 (588)
T d1b3ua_ 276 EITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCEN 311 (588)
T ss_dssp HHHHHTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHT
T ss_pred hhhhhhhhHHHHHHHhccchHHHHHHHHHHHHHHHH
Confidence 223346789999999999999999998887765543
|
| >d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: PBS lyase HEAT-like repeat domain: Hypothetical protein YibA species: Escherichia coli [TaxId: 562]
Probab=97.50 E-value=0.0016 Score=63.02 Aligned_cols=221 Identities=12% Similarity=0.113 Sum_probs=133.2
Q ss_pred hhhcCCCHHHHHHHHHHHHHHHccCcccchhcccCCcHHHHHHHhhccccCCCHHHHHHHHHHHHHHhccCCCCCccccc
Q 036199 388 SRLTELNWDCQCKVIEDYETRLEHDNQVSHSLSSTNFVEPLIRFLRDARDLHDSRAQRIGCRLLLAFVSKNRSGIPYLNE 467 (710)
Q Consensus 388 ~~L~s~~~e~q~~Al~~L~~Lak~~~~~r~~I~~~G~I~~LV~lL~s~~~~~d~~~q~~A~~~L~nL~~~~~~k~~i~~~ 467 (710)
..|.+.++.++..|+..|.... ....++.|+++|.+ .|+.++..|+.+|..+..... ...
T Consensus 26 ~~L~d~~~~vR~~A~~~L~~~~-----------~~~~~~~l~~~l~d----~~~~vr~~a~~aL~~l~~~~~-----~~~ 85 (276)
T d1oyza_ 26 RLLDDHNSLKRISSARVLQLRG-----------GQDAVRLAIEFCSD----KNYIRRDIGAFILGQIKICKK-----CED 85 (276)
T ss_dssp HHTTCSSHHHHHHHHHHHHHHC-----------CHHHHHHHHHHHTC----SSHHHHHHHHHHHHHSCCCTT-----THH
T ss_pred HHhcCCCHHHHHHHHHHHHhhC-----------CHhHHHHHHHHHcC----CCHHHHHHHHHHHHHhccccc-----ccc
Confidence 6778889999999998887652 23568999999987 789999999999988733221 123
Q ss_pred cchHHHHHH-hccCcH--HHHHHHHHHHhccCchhhHHHhhhCcHHHHHHhhcCCCHHHHHHHHHHHHHhccCccccccc
Q 036199 468 DLFSLLASF-LHSAAA--TEETLAILVALSSYAYFISKIVASGALASILNMLDSPNGKFQELAIKILHNLSSDVDIQSHI 544 (710)
Q Consensus 468 gaI~~LV~l-L~s~~~--~~~Aa~~L~~Ls~~~~nk~~I~~~GaI~~LV~LL~~~~~~~~~~A~~aL~nLs~~~en~~~i 544 (710)
..++.+... +++++. ...|+.+|..+...... .....++.+...+.+.++.++..|+.++....
T Consensus 86 ~~~~~l~~~~l~d~~~~vr~~a~~aL~~~~~~~~~----~~~~~~~~l~~~~~d~~~~vr~~a~~~l~~~~--------- 152 (276)
T d1oyza_ 86 NVFNILNNMALNDKSACVRATAIESTAQRCKKNPI----YSPKIVEQSQITAFDKSTNVRRATAFAISVIN--------- 152 (276)
T ss_dssp HHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGG----GHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC----------
T ss_pred chHHHHHHHHhcCCChhHHHHHHHHHHHHccccch----hhHHHHHHHHHHhcCcchHHHHHHHHHHhhcc---------
Confidence 344555554 455554 35777777776533221 12345778888888888888887877776543
Q ss_pred ccccchhchHHhhcCc--hHHHHHHHHHHHHhcCc----------------chHHHH------HhhcCChHHHHHHhhcC
Q 036199 545 APSEFLPKLVPFLKDA--TLAVSCLVILKNMCNTE----------------HARVCV------VETSGCLPSVAELLEIG 600 (710)
Q Consensus 545 v~aG~V~~Lv~lL~~~--~~~~~al~iL~nLa~~~----------------e~r~~i------~~~~g~I~~Lv~lL~~~ 600 (710)
....++.++.++.+. .....+..++.+..... ..+... ......++.|+..+..
T Consensus 153 -~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~L~~~l~d- 230 (276)
T d1oyza_ 153 -DKATIPLLINLLKDPNGDVRNWAAFAININKYDNSDIRDCFVEMLQDKNEEVRIEAIIGLSYRKDKRVLSVLCDELKK- 230 (276)
T ss_dssp ---CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTCGGGHHHHHHHHTS-
T ss_pred -hHHHHHHHHHhcccccchhhhhHHHHHHhhhccccccchhhhhhhhhhhhhhhhhhccccchhhhhhhHHHHHHHhCC-
Confidence 234455555555332 22222223222222111 001000 0113467777777764
Q ss_pred CHHHHHHHHHHHHHHhcCChHHHHHHHhCCchHHHHHHhhc-CCHHHHHHHHHHHH
Q 036199 601 SEEDQEHAVAILLCLCSQRDQYCKLVMNEGVIPSLVKISVY-GNDKAKVSALELRR 655 (710)
Q Consensus 601 s~~~ke~A~~aL~~Lc~~~~~~~~~v~~~G~v~~Lv~L~~~-gt~~~k~kA~~LL~ 655 (710)
+.++..|+.+|..+.. .++++.|..++.+ .+..++..|...|+
T Consensus 231 -~~vr~~a~~aL~~ig~-----------~~~~~~L~~~l~~~~d~~vr~~A~~~L~ 274 (276)
T d1oyza_ 231 -NTVYDDIIEAAGELGD-----------KTLLPVLDTMLYKFDDNEIITSAIDKLK 274 (276)
T ss_dssp -SSCCHHHHHHHHHHCC-----------GGGHHHHHHHHTTSSCCHHHHHHHHHHT
T ss_pred -hHHHHHHHHHHHHcCC-----------HHHHHHHHHHHccCCCHHHHHHHHHHHc
Confidence 3466778877776632 3578888887665 46778888877653
|
| >d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.39 E-value=0.00073 Score=73.64 Aligned_cols=250 Identities=12% Similarity=0.115 Sum_probs=162.3
Q ss_pred cCCCHHHHHHHHHHHHHHHccCcccchhcccCCcHHHHHHHhhccccCCCHHHHHHHHHHHHHHhccCCCCCccccccch
Q 036199 391 TELNWDCQCKVIEDYETRLEHDNQVSHSLSSTNFVEPLIRFLRDARDLHDSRAQRIGCRLLLAFVSKNRSGIPYLNEDLF 470 (710)
Q Consensus 391 ~s~~~e~q~~Al~~L~~Lak~~~~~r~~I~~~G~I~~LV~lL~s~~~~~d~~~q~~A~~~L~nL~~~~~~k~~i~~~gaI 470 (710)
...+..++..|+..+..+...-+... ...-++|.+.++..+ .....+..|+.++..+...... -.....+
T Consensus 97 ~~~~~~Vr~~a~~~l~~i~~~~~~~~---~~~~l~p~i~~L~~~----~~~~~r~~a~~ll~~~~~~~~~---~~~~~l~ 166 (588)
T d1b3ua_ 97 TVEETVVRDKAVESLRAISHEHSPSD---LEAHFVPLVKRLAGG----DWFTSRTSACGLFSVCYPRVSS---AVKAELR 166 (588)
T ss_dssp TSSCHHHHHHHHHHHHHHHTTSCHHH---HHHTHHHHHHHHHTC----SSHHHHHHHGGGHHHHTTTSCH---HHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHHhCCHHH---HHHHHHHHHHHHhcc----cchHHHHHHHHHHHHHHHHhhH---HHHHHHH
Confidence 44567788899999988876433211 223345544455544 3455666666666665432211 1234467
Q ss_pred HHHHHHhccCcH--HHHHHHHHHHhccCchhhHHHhhhCcHHHHHHhhcCCCHHHHHHHHHHHHHhccCccccccccccc
Q 036199 471 SLLASFLHSAAA--TEETLAILVALSSYAYFISKIVASGALASILNMLDSPNGKFQELAIKILHNLSSDVDIQSHIAPSE 548 (710)
Q Consensus 471 ~~LV~lL~s~~~--~~~Aa~~L~~Ls~~~~nk~~I~~~GaI~~LV~LL~~~~~~~~~~A~~aL~nLs~~~en~~~iv~aG 548 (710)
+.+..++.+.+. ++.|+.++..++..-... ......+|.|..++.+++..++..|+.+|..++..-... .....
T Consensus 167 ~~~~~l~~D~~~~VR~~a~~~l~~~~~~~~~~--~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~i~~~~~~~--~~~~~ 242 (588)
T d1b3ua_ 167 QYFRNLCSDDTPMVRRAAASKLGEFAKVLELD--NVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQE--DLEAL 242 (588)
T ss_dssp HHHHHHHTCSCHHHHHHHHHHHHHHHHTSCHH--HHHHTHHHHHHHHHTCSCHHHHTTHHHHHHHHHHHSCHH--HHHHH
T ss_pred HHHHHHhccCCHHHHHHHHHHHHHHHHHhcHH--HHHHHHHHHHHHHhcCCchhhHHHHHHHHHHhhccCCHH--HHHHH
Confidence 788888887765 467888888877532221 223566888899999999999999999999887421111 11233
Q ss_pred chhchHHhhcCc--hHHHHHHHHHHHHhcCcchHHHHHhhcCChHHHHHHhhcCCHHHHHHHHHHHHHHhcCCh-HHHHH
Q 036199 549 FLPKLVPFLKDA--TLAVSCLVILKNMCNTEHARVCVVETSGCLPSVAELLEIGSEEDQEHAVAILLCLCSQRD-QYCKL 625 (710)
Q Consensus 549 ~V~~Lv~lL~~~--~~~~~al~iL~nLa~~~e~r~~i~~~~g~I~~Lv~lL~~~s~~~ke~A~~aL~~Lc~~~~-~~~~~ 625 (710)
.+|.+..++.|+ .++..++.+|.+++..-.. .+.. ...++.+..++...+++++..|+..|..+|..-. .....
T Consensus 243 i~~~l~~~~~D~~~~Vr~~~~~~l~~l~~~~~~--~~~~-~~l~~~l~~ll~d~~~~vr~~a~~~l~~~~~~l~~~~~~~ 319 (588)
T d1b3ua_ 243 VMPTLRQAAEDKSWRVRYMVADKFTELQKAVGP--EITK-TDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCREN 319 (588)
T ss_dssp THHHHHHHHTCSSHHHHHHHHHTHHHHHHHHCH--HHHH-HTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCTTTHHH
T ss_pred HHHHHHHhcccccHHHHHHHHHhHHHHHHHhhh--hhhh-hhhhHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 577777777665 4677888888888753221 1222 3578999999999999999999999998886432 22223
Q ss_pred HHhCCchHHHHHHhhcCCHHHHHHHHHHHHHh
Q 036199 626 VMNEGVIPSLVKISVYGNDKAKVSALELRRLL 657 (710)
Q Consensus 626 v~~~G~v~~Lv~L~~~gt~~~k~kA~~LL~~l 657 (710)
..-..+++.+..+..+.+..+|..+...+..+
T Consensus 320 ~~~~~i~~~l~~~~~d~~~~vr~~~~~~l~~~ 351 (588)
T d1b3ua_ 320 VIMSQILPCIKELVSDANQHVKSALASVIMGL 351 (588)
T ss_dssp HHHHTHHHHHHHHHTCSCHHHHHHHHTTGGGG
T ss_pred hhHHHHHHHHHHhhcCCChHHHHHHHHHHhhh
Confidence 33345678888888888888887776655433
|
| >d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: PBS lyase HEAT-like repeat domain: Hypothetical protein YibA species: Escherichia coli [TaxId: 562]
Probab=97.32 E-value=0.0077 Score=57.87 Aligned_cols=163 Identities=14% Similarity=0.090 Sum_probs=107.8
Q ss_pred CcHHHHHHHhhccccCCCHHHHHHHHHHHHHHhccCCCCCccccccchHHHHHHhccCcHH--HHHHHHHHHhccCchhh
Q 036199 423 NFVEPLIRFLRDARDLHDSRAQRIGCRLLLAFVSKNRSGIPYLNEDLFSLLASFLHSAAAT--EETLAILVALSSYAYFI 500 (710)
Q Consensus 423 G~I~~LV~lL~s~~~~~d~~~q~~A~~~L~nL~~~~~~k~~i~~~gaI~~LV~lL~s~~~~--~~Aa~~L~~Ls~~~~nk 500 (710)
...+.|+++|.+ .|+.++..|+.+|..+. ...+++.|+.+|++++.. ..|+.+|..+.......
T Consensus 19 ~~~~~L~~~L~d----~~~~vR~~A~~~L~~~~----------~~~~~~~l~~~l~d~~~~vr~~a~~aL~~l~~~~~~~ 84 (276)
T d1oyza_ 19 LNDDELFRLLDD----HNSLKRISSARVLQLRG----------GQDAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKCE 84 (276)
T ss_dssp SCHHHHHHHTTC----SSHHHHHHHHHHHHHHC----------CHHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTTTH
T ss_pred CCHHHHHHHhcC----CCHHHHHHHHHHHHhhC----------CHhHHHHHHHHHcCCCHHHHHHHHHHHHHhccccccc
Confidence 456778999987 79999999999998762 246899999999988763 57888888876443332
Q ss_pred HHHhhhCcHHHHHH-hhcCCCHHHHHHHHHHHHHhccCcccccccccccchhchHHhhcCc--hHHHHHHHHHHHHhcCc
Q 036199 501 SKIVASGALASILN-MLDSPNGKFQELAIKILHNLSSDVDIQSHIAPSEFLPKLVPFLKDA--TLAVSCLVILKNMCNTE 577 (710)
Q Consensus 501 ~~I~~~GaI~~LV~-LL~~~~~~~~~~A~~aL~nLs~~~en~~~iv~aG~V~~Lv~lL~~~--~~~~~al~iL~nLa~~~ 577 (710)
.. .++.|.. ++++.++.++..|+.+|.+++.... ......++.+...+.++ .+...++.++....
T Consensus 85 ~~-----~~~~l~~~~l~d~~~~vr~~a~~aL~~~~~~~~----~~~~~~~~~l~~~~~d~~~~vr~~a~~~l~~~~--- 152 (276)
T d1oyza_ 85 DN-----VFNILNNMALNDKSACVRATAIESTAQRCKKNP----IYSPKIVEQSQITAFDKSTNVRRATAFAISVIN--- 152 (276)
T ss_dssp HH-----HHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCG----GGHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC----
T ss_pred cc-----hHHHHHHHHhcCCChhHHHHHHHHHHHHccccc----hhhHHHHHHHHHHhcCcchHHHHHHHHHHhhcc---
Confidence 22 2344444 4578899999999999999875332 12234566777777654 34444444443321
Q ss_pred chHHHHHhhcCChHHHHHHhhcCCHHHHHHHHHHHHHHhcCC
Q 036199 578 HARVCVVETSGCLPSVAELLEIGSEEDQEHAVAILLCLCSQR 619 (710)
Q Consensus 578 e~r~~i~~~~g~I~~Lv~lL~~~s~~~ke~A~~aL~~Lc~~~ 619 (710)
. ...++.+..++...+...+..+..++..+....
T Consensus 153 -------~-~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ 186 (276)
T d1oyza_ 153 -------D-KATIPLLINLLKDPNGDVRNWAAFAININKYDN 186 (276)
T ss_dssp ----------CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCC
T ss_pred -------h-HHHHHHHHHhcccccchhhhhHHHHHHhhhccc
Confidence 1 345666777776666666666666665554444
|
| >d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.88 E-value=0.016 Score=59.36 Aligned_cols=261 Identities=11% Similarity=0.079 Sum_probs=149.6
Q ss_pred CHHHHHHHHHHHHHHHccCcccchhcccCCcHHHHHHHhhccccCCCHHHHHHHHHHHHHHhccCCC--CCccccccchH
Q 036199 394 NWDCQCKVIEDYETRLEHDNQVSHSLSSTNFVEPLIRFLRDARDLHDSRAQRIGCRLLLAFVSKNRS--GIPYLNEDLFS 471 (710)
Q Consensus 394 ~~e~q~~Al~~L~~Lak~~~~~r~~I~~~G~I~~LV~lL~s~~~~~d~~~q~~A~~~L~nL~~~~~~--k~~i~~~gaI~ 471 (710)
++..+..++..+..+..........-.....++.++..+.+. ..+..++..|+.++.++...... .........++
T Consensus 142 ~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~il~~~~~~l~~~--~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~ 219 (458)
T d1ibrb_ 142 TEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKE--EPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQ 219 (458)
T ss_dssp CHHHHHHHHHHHHHHHHHSCGGGTGGGHHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHhccc--ccCHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhHh
Confidence 344555666666666544332222112234567777777652 24578888899888887532210 11111234556
Q ss_pred HHHHHhccCcHH--HHHHHHHHHhccC-chhhHHHhhhCcHHHHHHhhcCCCHHHHHHHHHHHHHhccCcc---------
Q 036199 472 LLASFLHSAAAT--EETLAILVALSSY-AYFISKIVASGALASILNMLDSPNGKFQELAIKILHNLSSDVD--------- 539 (710)
Q Consensus 472 ~LV~lL~s~~~~--~~Aa~~L~~Ls~~-~~nk~~I~~~GaI~~LV~LL~~~~~~~~~~A~~aL~nLs~~~e--------- 539 (710)
.+..++.+++.. ..++.+|..+... ...-.........+.+...+.+.+.+.+..|+..+..++....
T Consensus 220 ~l~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~a~~~l~~i~~~~~~~~~~~~~~ 299 (458)
T d1ibrb_ 220 VVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEA 299 (458)
T ss_dssp HHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCCT
T ss_pred hHHHHhcCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHhhhhH
Confidence 666777776653 4677777766522 1111111122334445566678888888888888877753110
Q ss_pred --------cccccccc----cchhchHHhhcC---------chHHHHHHHHHHHHhcCcchHHHHHhhcCChHHHHHHhh
Q 036199 540 --------IQSHIAPS----EFLPKLVPFLKD---------ATLAVSCLVILKNMCNTEHARVCVVETSGCLPSVAELLE 598 (710)
Q Consensus 540 --------n~~~iv~a----G~V~~Lv~lL~~---------~~~~~~al~iL~nLa~~~e~r~~i~~~~g~I~~Lv~lL~ 598 (710)
........ ..++.+...+.+ ......|..++..++..... .+.. ..++.+...+.
T Consensus 300 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~--~~~~--~l~~~i~~~l~ 375 (458)
T d1ibrb_ 300 AEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCED--DIVP--HVLPFIKEHIK 375 (458)
T ss_dssp TCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTT--THHH--HHHHHHHHHTT
T ss_pred HHhhhHHHHHHHHHHHHHHHHHhhhHHhhhhcchhhhccccccHHHHHHHHHHHHHHhccH--hhhh--HHHHHHHHHhc
Confidence 01111111 122333333321 13466677777777652211 1222 24566677778
Q ss_pred cCCHHHHHHHHHHHHHHhcCChHHHHHHHhCCchHHHHHHhhcCCHHHHHHHHHHHHHhhhc
Q 036199 599 IGSEEDQEHAVAILLCLCSQRDQYCKLVMNEGVIPSLVKISVYGNDKAKVSALELRRLLRDV 660 (710)
Q Consensus 599 ~~s~~~ke~A~~aL~~Lc~~~~~~~~~v~~~G~v~~Lv~L~~~gt~~~k~kA~~LL~~l~~~ 660 (710)
+.+...|+.|+.+|..++.........-.-..+++.|+..+.+.++++|..|.+.|..+.++
T Consensus 376 s~~~~~r~aal~~l~~i~~~~~~~~~~~~l~~i~~~l~~~l~d~~~~VR~~a~~~l~~i~~~ 437 (458)
T d1ibrb_ 376 NPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICEL 437 (458)
T ss_dssp CSSHHHHHHHHHHHHHTSSSSCTTTTCTTTTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHH
Confidence 88999999999999998865321110111235789999999999999999999999877665
|
| >d1ho8a_ a.118.1.9 (A:) Regulatory subunit H of the V-type ATPase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Regulatory subunit H of the V-type ATPase domain: Regulatory subunit H of the V-type ATPase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.86 E-value=0.0034 Score=66.38 Aligned_cols=219 Identities=14% Similarity=0.140 Sum_probs=149.0
Q ss_pred CCCHHHHHHHHHHHHHHhccCCCCCccc--cccchHHHHHHhccC----------------cH---HHHHHHHHHHhccC
Q 036199 438 LHDSRAQRIGCRLLLAFVSKNRSGIPYL--NEDLFSLLASFLHSA----------------AA---TEETLAILVALSSY 496 (710)
Q Consensus 438 ~~d~~~q~~A~~~L~nL~~~~~~k~~i~--~~gaI~~LV~lL~s~----------------~~---~~~Aa~~L~~Ls~~ 496 (710)
..+...+.-|+..|..+......|..+. +...++.|+.+|+.. .. .-+++-+++-||-.
T Consensus 176 ~~~~~~~~i~v~~lq~llr~~~~R~~fw~~~~~~~~~l~~il~~a~~~~~~~~~~~~~~~~~~~Ql~Y~~ll~lWlLSF~ 255 (477)
T d1ho8a_ 176 IEQMDTCYVCIRLLQELAVIPEYRDVIWLHEKKFMPTLFKILQRATDSQLATRIVATNSNHLGIQLQYHSLLLIWLLTFN 255 (477)
T ss_dssp TTCHHHHHHHHHHHHHHHTSHHHHHHHHTTHHHHHHHHHHHHHHHHC-------------CCHHHHHHHHHHHHHHHTTS
T ss_pred ccccchHHHHHHHHHHHhcCccHHHHHHHcccchHHHHHHHHHHHhcccccchhhcccCCCccHHHHHHHHHHHHHHHcC
Confidence 4678888888888888876655555442 345677777777531 11 13788888999988
Q ss_pred chhhHHHhhh--CcHHHHHHhhc-CCCHHHHHHHHHHHHHhccCcc--c----ccccccccchhchHHhh-----cCchH
Q 036199 497 AYFISKIVAS--GALASILNMLD-SPNGKFQELAIKILHNLSSDVD--I----QSHIAPSEFLPKLVPFL-----KDATL 562 (710)
Q Consensus 497 ~~nk~~I~~~--GaI~~LV~LL~-~~~~~~~~~A~~aL~nLs~~~e--n----~~~iv~aG~V~~Lv~lL-----~~~~~ 562 (710)
++....+.+. +.|+.|+++++ +....+.+-++.+|.||..... + ...|+..++++. +..| .|+++
T Consensus 256 ~~~~~~l~~~~~~~i~~l~~i~~~s~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~v~~~~l~~-l~~L~~r~~~Dedl 334 (477)
T d1ho8a_ 256 PVFANELVQKYLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTRVKQHKKVIKQLLLLGNALPT-VQSLSERKYSDEEL 334 (477)
T ss_dssp HHHHHHHHTTSHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSSSTTHHHHHHHHHHHHCHHHH-HHHHHSSCCSSHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHcchhHH-HHHHhcCCCCCHHH
Confidence 8888777765 45999999995 4567888999999999986532 2 233555555544 4555 35554
Q ss_pred HHHHH-------HHHHHHhcCcchHHHHHh------------------------h-cCChHHHHHHhhc----------C
Q 036199 563 AVSCL-------VILKNMCNTEHARVCVVE------------------------T-SGCLPSVAELLEI----------G 600 (710)
Q Consensus 563 ~~~al-------~iL~nLa~~~e~r~~i~~------------------------~-~g~I~~Lv~lL~~----------~ 600 (710)
.+..- .....|++-++...++-. . -..+..|+++|.. .
T Consensus 335 ~edl~~L~~~L~~~~k~lTsfd~Y~~Ev~Sg~L~WSP~H~se~FW~EN~~kf~e~~~~llk~L~~lL~~~~~~~~~~~s~ 414 (477)
T d1ho8a_ 335 RQDISNLKEILENEYQELTSFDEYVAELDSKLLCWSPPHVDNGFWSDNIDEFKKDNYKIFRQLIELLQAKVRNGDVNAKQ 414 (477)
T ss_dssp HHHHHHHHHHHHHHHHTCCHHHHHHHHHHHTCCCCCGGGGCHHHHHHHSGGGSSGGGHHHHHHHHHHHHHHHTTCCCSHH
T ss_pred HHHHHHHHHHHHHHHHhcCcHHHHHHHHhcCCCCCCCCcCChhHHHHHHHhhcccchHHHHHHHHHHhhcccccccccCC
Confidence 33211 111223333333333311 0 1246788888862 3
Q ss_pred CHHHHHHHHHHHHHHhcCChHHHHHHHhCCchHHHHHHhhcCCHHHHHHHHHHHHHh
Q 036199 601 SEEDQEHAVAILLCLCSQRDQYCKLVMNEGVIPSLVKISVYGNDKAKVSALELRRLL 657 (710)
Q Consensus 601 s~~~ke~A~~aL~~Lc~~~~~~~~~v~~~G~v~~Lv~L~~~gt~~~k~kA~~LL~~l 657 (710)
++.+...||.=+-.+|.+.|.-+..+.+.|+=..++.|+.+.++.+|..|...++-+
T Consensus 415 D~~~lAVAc~DiGefvr~~P~gr~il~~lg~K~~vM~Lm~h~d~~Vr~eAL~avQkl 471 (477)
T d1ho8a_ 415 EKIIIQVALNDITHVVELLPESIDVLDKTGGKADIMELLNHSDSRVKYEALKATQAI 471 (477)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTHHHHHHHHSHHHHHHHHTSCSSHHHHHHHHHHHHHH
T ss_pred CcceeehhhhhHHHHHHHCcchhHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 556666677778899999888899999999999999999999999999999988844
|
| >d1wima_ g.44.1.1 (A:) UbcM4-interacting protein 4 (KIAA0161) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: RING/U-box superfamily: RING/U-box family: RING finger domain, C3HC4 domain: UbcM4-interacting protein 4 (KIAA0161) species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.60 E-value=0.00051 Score=56.88 Aligned_cols=42 Identities=21% Similarity=0.434 Sum_probs=32.4
Q ss_pred ccccCCccccC--C-ceecCCCCccchhhHHHHhh----hCC---CCCCCCC
Q 036199 269 FKCPLSLRLMY--D-PVVIESGQTFERMWIQKWFE----EGN---HTCPKTK 310 (710)
Q Consensus 269 f~CPI~~~~m~--D-PV~~~~G~ty~r~~I~~w~~----~g~---~~cP~t~ 310 (710)
-.||||++-+. | |++..|||.||+.||+.|+. +|. -+||.++
T Consensus 6 ~~C~IC~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~ 57 (94)
T d1wima_ 6 SGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAA 57 (94)
T ss_dssp CCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTT
T ss_pred CcCccCCCcccCCceEEECCCCCEeCCcCHHHHHHHHHhcCCccccCCcCCC
Confidence 35999999875 3 45568999999999999985 233 2599864
|
| >d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.56 E-value=0.0094 Score=61.13 Aligned_cols=259 Identities=10% Similarity=0.068 Sum_probs=157.5
Q ss_pred hhhcCCCHHHHHHHHHHHHHHHccCcccchhcccCCcHHHHHHHhhccccCCCHHHHHHHHHHHHHHhccCCC-------
Q 036199 388 SRLTELNWDCQCKVIEDYETRLEHDNQVSHSLSSTNFVEPLIRFLRDARDLHDSRAQRIGCRLLLAFVSKNRS------- 460 (710)
Q Consensus 388 ~~L~s~~~e~q~~Al~~L~~Lak~~~~~r~~I~~~G~I~~LV~lL~s~~~~~d~~~q~~A~~~L~nL~~~~~~------- 460 (710)
..+.+.+.+.+.+|-..|..+.+.++ .+++..|..+|.+. ..+..++..|+..|.|.......
T Consensus 7 ~~~~s~d~~~r~~A~~~L~~~~~~~~--------~~~~~~l~~il~~~--~~~~~~R~~A~i~lk~~l~~~~~~~~~~~~ 76 (458)
T d1ibrb_ 7 EKTVSPDRLELEAAQKFLERAAVENL--------PTFLVELSRVLANP--GNSQVARVAAGLQIKNSLTSKDPDIKAQYQ 76 (458)
T ss_dssp HHTTCSCHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHCT--TSCHHHHHHHHHHHHHHHCCSSHHHHHHHH
T ss_pred HHHhCcCHHHHHHHHHHHHHHHhcCc--------hHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHhhccCchhhhHHh
Confidence 44556788889899888888876542 35788888888652 24567888888888887542210
Q ss_pred ----CC-ccccccchHHHHHHhccCcHH-HHHHHHHHHhccCchhhHHHhhhCcHHHHHHhhcC--CCHHHHHHHHHHHH
Q 036199 461 ----GI-PYLNEDLFSLLASFLHSAAAT-EETLAILVALSSYAYFISKIVASGALASILNMLDS--PNGKFQELAIKILH 532 (710)
Q Consensus 461 ----k~-~i~~~gaI~~LV~lL~s~~~~-~~Aa~~L~~Ls~~~~nk~~I~~~GaI~~LV~LL~~--~~~~~~~~A~~aL~ 532 (710)
.. .-........++..+.+++.. ..++.++..++....... .-.+.++.|+..+.+ .+...+..++.+|.
T Consensus 77 ~~~~~l~~~~~~~i~~~ll~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~~~~~~l~~~l~~~~~~~~~~~~~l~~l~ 154 (458)
T d1ibrb_ 77 QRWLAIDANARREVKNYVLQTLGTETYRPSSASQCVAGIACAEIPVN--QWPELIPQLVANVTNPNSTEHMKESTLEAIG 154 (458)
T ss_dssp HHHHTSCHHHHHHHHHHHHHHTTCCCSSSCSHHHHHHHHHHHHGGGT--CCTTHHHHHHHHHHCTTCCHHHHHHHHHHHH
T ss_pred hhhccCCHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHhCCcc--cCcchhHHHHHHHHhhcchHHHHHHHHHHHH
Confidence 00 001233445566666655432 233333333321111000 014678999998855 45677788888888
Q ss_pred HhccC-cccccccccccchhchHHhhcC----chHHHHHHHHHHHHhcCcchHH--HHHhhcCChHHHHHHhhcCCHHHH
Q 036199 533 NLSSD-VDIQSHIAPSEFLPKLVPFLKD----ATLAVSCLVILKNMCNTEHARV--CVVETSGCLPSVAELLEIGSEEDQ 605 (710)
Q Consensus 533 nLs~~-~en~~~iv~aG~V~~Lv~lL~~----~~~~~~al~iL~nLa~~~e~r~--~i~~~~g~I~~Lv~lL~~~s~~~k 605 (710)
.++.. ........-...++.++..+.+ ..+...|+.++..+........ .... ....+.+..++...+++.+
T Consensus 155 ~~~~~~~~~~~~~~~~~il~~~~~~l~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ 233 (458)
T d1ibrb_ 155 YICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESER-HFIMQVVCEATQCPDTRVR 233 (458)
T ss_dssp HHHHHSCGGGTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHH-HHHHHHHHHHTTCSSHHHH
T ss_pred HHHhhccchhhhhhHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHhhhhhhhhHHHH-HHhHhhHHHHhcCCCHHHH
Confidence 87743 2222222334456777777743 3568888888888876432211 1111 2345667777888899999
Q ss_pred HHHHHHHHHHhcCChHHHHHHHhCCchHHHHHHhhcCCHHHHHHHHHHHHHhhh
Q 036199 606 EHAVAILLCLCSQRDQYCKLVMNEGVIPSLVKISVYGNDKAKVSALELRRLLRD 659 (710)
Q Consensus 606 e~A~~aL~~Lc~~~~~~~~~v~~~G~v~~Lv~L~~~gt~~~k~kA~~LL~~l~~ 659 (710)
..++.+|..++...+......+.....+.+.....+.++..+..|...+..+.+
T Consensus 234 ~~~~~~l~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~a~~~l~~i~~ 287 (458)
T d1ibrb_ 234 VAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCD 287 (458)
T ss_dssp HHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHHHCSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHH
Confidence 999999999987664322222233344555666778888888888887776543
|
| >d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: PBS lyase HEAT-like repeat domain: MTH187 species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=96.53 E-value=0.0021 Score=54.23 Aligned_cols=85 Identities=19% Similarity=0.251 Sum_probs=70.0
Q ss_pred CcHHHHHHhhcCCCHHHHHHHHHHHHHhccCcccccccccccchhchHHhhcC--chHHHHHHHHHHHHhcCcchHHHHH
Q 036199 507 GALASILNMLDSPNGKFQELAIKILHNLSSDVDIQSHIAPSEFLPKLVPFLKD--ATLAVSCLVILKNMCNTEHARVCVV 584 (710)
Q Consensus 507 GaI~~LV~LL~~~~~~~~~~A~~aL~nLs~~~en~~~iv~aG~V~~Lv~lL~~--~~~~~~al~iL~nLa~~~e~r~~i~ 584 (710)
.++++|+.+|.++++.++..|+.+|.++. ..++++.|+.+|.+ +.++..|+.+|..+..
T Consensus 22 ~~~~~L~~~l~d~~~~vR~~a~~~L~~~~----------~~~~~~~L~~~l~d~~~~VR~~a~~aL~~i~~--------- 82 (111)
T d1te4a_ 22 EAFEPLLESLSNEDWRIRGAAAWIIGNFQ----------DERAVEPLIKLLEDDSGFVRSGAARSLEQIGG--------- 82 (111)
T ss_dssp TTHHHHHHGGGCSCHHHHHHHHHHHGGGC----------SHHHHHHHHHHHHHCCTHHHHHHHHHHHHHCS---------
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHhcc----------hhhhHHHHHhhhccchhHHHHHHHHHHHHhCc---------
Confidence 46899999999999999999999997654 34678999999954 5778888888877632
Q ss_pred hhcCChHHHHHHhhcCCHHHHHHHHHHH
Q 036199 585 ETSGCLPSVAELLEIGSEEDQEHAVAIL 612 (710)
Q Consensus 585 ~~~g~I~~Lv~lL~~~s~~~ke~A~~aL 612 (710)
.+.++.|..++...++.++..|+.+|
T Consensus 83 --~~~~~~L~~ll~d~~~~vr~~A~~aL 108 (111)
T d1te4a_ 83 --ERVRAAMEKLAETGTGFARKVAVNYL 108 (111)
T ss_dssp --HHHHHHHHHHTTSCCTHHHHHHHHHG
T ss_pred --cchHHHHHHHHcCCCHHHHHHHHHHH
Confidence 34578888899999999999999887
|
| >d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120) species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.50 E-value=0.003 Score=74.57 Aligned_cols=263 Identities=15% Similarity=0.133 Sum_probs=159.5
Q ss_pred cchhhcCCCHHHHHHHHHHHHHHHccCcccchhcccCCcHHHHHHHhhccccCCCHHHHHHHHHHHHHHhccCCCCCccc
Q 036199 386 DLSRLTELNWDCQCKVIEDYETRLEHDNQVSHSLSSTNFVEPLIRFLRDARDLHDSRAQRIGCRLLLAFVSKNRSGIPYL 465 (710)
Q Consensus 386 ~L~~L~s~~~e~q~~Al~~L~~Lak~~~~~r~~I~~~G~I~~LV~lL~s~~~~~d~~~q~~A~~~L~nL~~~~~~k~~i~ 465 (710)
.|.++.+.+++.+..|+..|......+.-....-....+++.|+++|.. .++++|..|+.+|..++..-... .
T Consensus 8 ll~k~~~~D~d~R~ma~~dl~~~l~~~~~~~~~~~~~~i~~~ll~~L~D----~~~~Vq~~A~k~l~~l~~~~~~~---~ 80 (1207)
T d1u6gc_ 8 LLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLED----KNGEVQNLAVKCLGPLVSKVKEY---Q 80 (1207)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTTC----SSHHHHHHHHHHHHHHHTTSCHH---H
T ss_pred HHHhcCCCCHhHHHHHHHHHHHHHhhcccccChHHHHHHHHHHHHHhCC----CCHHHHHHHHHHHHHHHHhCcHh---h
Confidence 3478899999999999999987765433221111223578888888876 78999999999999886542211 1
Q ss_pred cccchHHHHHHhccCcH--HHHHHHHHHHhc----cCchhhH--HHhhhCcHHHHHHhh-cCCCHHHHHHHHHHHHHhcc
Q 036199 466 NEDLFSLLASFLHSAAA--TEETLAILVALS----SYAYFIS--KIVASGALASILNML-DSPNGKFQELAIKILHNLSS 536 (710)
Q Consensus 466 ~~gaI~~LV~lL~s~~~--~~~Aa~~L~~Ls----~~~~nk~--~I~~~GaI~~LV~LL-~~~~~~~~~~A~~aL~nLs~ 536 (710)
-...++.|+..+.++.. +..+..+|..+. ....+.. .......++.|...+ ...+..++..|+.+|..+..
T Consensus 81 ~~~l~~~L~~~l~~~~~~~r~~~~~~L~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~v~~~al~~l~~l~~ 160 (1207)
T d1u6gc_ 81 VETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLS 160 (1207)
T ss_dssp HHHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHH
Confidence 13456666665554443 234444443332 1111111 111122344555544 34567888899999988875
Q ss_pred CcccccccccccchhchHHhhcCc--hHHHHHHHHHHHHhcCcchHHHHHhhcCChHHHHHHhhc-CCHHHHHHHHHHHH
Q 036199 537 DVDIQSHIAPSEFLPKLVPFLKDA--TLAVSCLVILKNMCNTEHARVCVVETSGCLPSVAELLEI-GSEEDQEHAVAILL 613 (710)
Q Consensus 537 ~~en~~~iv~aG~V~~Lv~lL~~~--~~~~~al~iL~nLa~~~e~r~~i~~~~g~I~~Lv~lL~~-~s~~~ke~A~~aL~ 613 (710)
.-++-..-....+++.|+..+.++ .++..|+.+|..|+..-.. ... ...++.++..+.. .+...+..++.+|.
T Consensus 161 ~~g~~l~~~~~~il~~l~~~l~~~~~~vR~~A~~~l~~l~~~~~~--~~~--~~~~~~ll~~l~~~~~~~~~~~~~~~l~ 236 (1207)
T d1u6gc_ 161 RQGGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGN--IVF--VDLIEHLLSELSKNDSMSTTRTYIQCIA 236 (1207)
T ss_dssp HTCSSCTTTHHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC------C--TTHHHHHHHHHHHTCSSCSCTTHHHHHH
T ss_pred HhhHhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHCCH--HHH--HHHHHHHHHHHccCCCHHHHHHHHHHHH
Confidence 433221112235667777777553 5688899999999874221 111 2346677766653 45555667778887
Q ss_pred HHhcCChHHHHHHHhCCchHHHHHHhhcCCHHHHHHHHHHHHHhhhc
Q 036199 614 CLCSQRDQYCKLVMNEGVIPSLVKISVYGNDKAKVSALELRRLLRDV 660 (710)
Q Consensus 614 ~Lc~~~~~~~~~v~~~G~v~~Lv~L~~~gt~~~k~kA~~LL~~l~~~ 660 (710)
.++...+.... -.-..+++.++..+.+.++..++.|...+..+-..
T Consensus 237 ~l~~~~~~~~~-~~l~~i~~~l~~~l~~~~~~~r~~al~~l~~l~~~ 282 (1207)
T d1u6gc_ 237 AISRQAGHRIG-EYLEKIIPLVVKFCNVDDDELREYCIQAFESFVRR 282 (1207)
T ss_dssp HHHHHSSGGGT-TSCTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHC
T ss_pred HHHHHcchhhH-HHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHh
Confidence 87765432100 01145688889999999999999999888866544
|
| >d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.28 E-value=0.029 Score=62.22 Aligned_cols=256 Identities=12% Similarity=0.061 Sum_probs=150.0
Q ss_pred hcCCCHHHHHHHHHHHHHHHccCcccchhcccCCcHHHHHHHhhccccCCCHHHHHHHHHHHHHHhccCCCCC-------
Q 036199 390 LTELNWDCQCKVIEDYETRLEHDNQVSHSLSSTNFVEPLIRFLRDARDLHDSRAQRIGCRLLLAFVSKNRSGI------- 462 (710)
Q Consensus 390 L~s~~~e~q~~Al~~L~~Lak~~~~~r~~I~~~G~I~~LV~lL~s~~~~~d~~~q~~A~~~L~nL~~~~~~k~------- 462 (710)
+.+.+.+.+.+|-..|..+.+.+. .+++..|...+.+. ..+..++..|+..|.|.........
T Consensus 14 ~~s~d~~~r~~Ae~~L~~~~~~~~--------~~~~~~l~~il~~~--~~~~~~r~~A~i~lkn~i~~~~~~~~~~~~~~ 83 (861)
T d2bpta1 14 ILSPDQNIRLTSETQLKKLSNDNF--------LQFAGLSSQVLIDE--NTKLEGRILAALTLKNELVSKDSVKTQQFAQR 83 (861)
T ss_dssp HHCSSHHHHHHHHHHHHHHHHHCH--------HHHHHHHHHHHTCT--TSCHHHHHHHHHHHHTTTCCSSHHHHHHHHHH
T ss_pred hcCCCHHHHHHHHHHHHHHHhcCc--------hHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHHhhcccchhhhhHHhh
Confidence 566788888888888887765432 35788888888762 2467788788888877643221100
Q ss_pred --ccc----cccchHHHHHHhccCcHH--HHHHHHHHHhccCchhhHHHhh-hCcHHHHHHhhcCCC-HHHHHHHHHHHH
Q 036199 463 --PYL----NEDLFSLLASFLHSAAAT--EETLAILVALSSYAYFISKIVA-SGALASILNMLDSPN-GKFQELAIKILH 532 (710)
Q Consensus 463 --~i~----~~gaI~~LV~lL~s~~~~--~~Aa~~L~~Ls~~~~nk~~I~~-~GaI~~LV~LL~~~~-~~~~~~A~~aL~ 532 (710)
..+ .......++..|.+++.. ..++.++..++..+-.. .+ ...++.|+..+.+.+ ...+..|+.+|.
T Consensus 84 ~~~~i~~~~~~~ik~~ll~~l~~~~~~vr~~~a~~i~~i~~~~~p~---~~wpeli~~L~~~~~s~~~~~~~~~al~~l~ 160 (861)
T d2bpta1 84 WITQVSPEAKNQIKTNALTALVSIEPRIANAAAQLIAAIADIELPH---GAWPELMKIMVDNTGAEQPENVKRASLLALG 160 (861)
T ss_dssp HHHHSCHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHGGG---TCCHHHHHHHHHHTSTTSCHHHHHHHHHHHH
T ss_pred hHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhCCc---CchHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Confidence 001 112334556666666543 35555555554321100 00 246788888887654 567778889998
Q ss_pred HhccCccccccccccc---chhchHHhhc--C--chHHHHHHHHHHHHhcCcchHH--HHHhhcCChHHHHHHhhcCCHH
Q 036199 533 NLSSDVDIQSHIAPSE---FLPKLVPFLK--D--ATLAVSCLVILKNMCNTEHARV--CVVETSGCLPSVAELLEIGSEE 603 (710)
Q Consensus 533 nLs~~~en~~~iv~aG---~V~~Lv~lL~--~--~~~~~~al~iL~nLa~~~e~r~--~i~~~~g~I~~Lv~lL~~~s~~ 603 (710)
.++..-++...-.-.. .+..++..+. + ..+...|+.++.++...-..-. .... ...++.|...+...+++
T Consensus 161 ~i~e~~~~~~~~~~~~~~~il~~i~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~ 239 (861)
T d2bpta1 161 YMCESADPQSQALVSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNNMEREGER-NYLMQVVCEATQAEDIE 239 (861)
T ss_dssp HHHHTSSTTSSTTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGCHHHHTSHHHH-HHHHHHHHHHHTCSCHH
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHhHhHHhhhhh-hHHHHhHHHHhcCCCHH
Confidence 8875433322211122 2333333332 2 3567788888888876322111 1111 23567777888889999
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHhCCchHHHHHHhhcCCHHHHHHHHHHHHHhhh
Q 036199 604 DQEHAVAILLCLCSQRDQYCKLVMNEGVIPSLVKISVYGNDKAKVSALELRRLLRD 659 (710)
Q Consensus 604 ~ke~A~~aL~~Lc~~~~~~~~~v~~~G~v~~Lv~L~~~gt~~~k~kA~~LL~~l~~ 659 (710)
.+..|+.+|..++...+......+..-+...+.....+.++..+..|..++..+.+
T Consensus 240 ~~~~~~~~l~~i~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~v~~~~~~~l~~l~~ 295 (861)
T d2bpta1 240 VQAAAFGCLCKIMSKYYTFMKPYMEQALYALTIATMKSPNDKVASMTVEFWSTICE 295 (861)
T ss_dssp HHHHHHHHHHHHHHHHGGGCHHHHHHTHHHHHHHHTTCSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHH
Confidence 99999999999887554322222222223333455667788888888877765543
|
| >d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: PBS lyase HEAT-like repeat domain: MTH187 species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=96.24 E-value=0.0039 Score=52.42 Aligned_cols=86 Identities=17% Similarity=0.244 Sum_probs=69.4
Q ss_pred CcHHHHHHHhhccccCCCHHHHHHHHHHHHHHhccCCCCCccccccchHHHHHHhccCcHH--HHHHHHHHHhccCchhh
Q 036199 423 NFVEPLIRFLRDARDLHDSRAQRIGCRLLLAFVSKNRSGIPYLNEDLFSLLASFLHSAAAT--EETLAILVALSSYAYFI 500 (710)
Q Consensus 423 G~I~~LV~lL~s~~~~~d~~~q~~A~~~L~nL~~~~~~k~~i~~~gaI~~LV~lL~s~~~~--~~Aa~~L~~Ls~~~~nk 500 (710)
..++.|+..|.+ .+..++..|+.+|.++ ...++++.|+.+|++++.. ..|+.+|..+
T Consensus 22 ~~~~~L~~~l~d----~~~~vR~~a~~~L~~~----------~~~~~~~~L~~~l~d~~~~VR~~a~~aL~~i------- 80 (111)
T d1te4a_ 22 EAFEPLLESLSN----EDWRIRGAAAWIIGNF----------QDERAVEPLIKLLEDDSGFVRSGAARSLEQI------- 80 (111)
T ss_dssp TTHHHHHHGGGC----SCHHHHHHHHHHHGGG----------CSHHHHHHHHHHHHHCCTHHHHHHHHHHHHH-------
T ss_pred HHHHHHHHHHcC----CCHHHHHHHHHHHHhc----------chhhhHHHHHhhhccchhHHHHHHHHHHHHh-------
Confidence 467888888876 7899999999998754 2456899999999987753 5788888654
Q ss_pred HHHhhhCcHHHHHHhhcCCCHHHHHHHHHHHH
Q 036199 501 SKIVASGALASILNMLDSPNGKFQELAIKILH 532 (710)
Q Consensus 501 ~~I~~~GaI~~LV~LL~~~~~~~~~~A~~aL~ 532 (710)
+..++++.|..++.++++.++..|+.+|.
T Consensus 81 ---~~~~~~~~L~~ll~d~~~~vr~~A~~aL~ 109 (111)
T d1te4a_ 81 ---GGERVRAAMEKLAETGTGFARKVAVNYLE 109 (111)
T ss_dssp ---CSHHHHHHHHHHTTSCCTHHHHHHHHHGG
T ss_pred ---CccchHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 44567999999999999999999998873
|
| >d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Karyopherin beta2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.96 E-value=0.05 Score=61.88 Aligned_cols=264 Identities=9% Similarity=0.007 Sum_probs=141.5
Q ss_pred hhhcCCCHHHHHHHHHHHHHHHccCcccchhcccCCcHHHHHHHhhccccCCCHHHHHHHHHHHHHHhccCCCCCccccc
Q 036199 388 SRLTELNWDCQCKVIEDYETRLEHDNQVSHSLSSTNFVEPLIRFLRDARDLHDSRAQRIGCRLLLAFVSKNRSGIPYLNE 467 (710)
Q Consensus 388 ~~L~s~~~e~q~~Al~~L~~Lak~~~~~r~~I~~~G~I~~LV~lL~s~~~~~d~~~q~~A~~~L~nL~~~~~~k~~i~~~ 467 (710)
..|.+.++.++..+++.|..++..-......-.-...++.++..+.+ .++.+|..|+.+|.++..+......-.-.
T Consensus 443 ~~l~d~~~~Vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~ll~~l~d----~~~~V~~~a~~al~~l~~~~~~~l~p~~~ 518 (888)
T d1qbkb_ 443 QCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILD----SNKRVQEAACSAFATLEEEACTELVPYLA 518 (888)
T ss_dssp HHTTSSCHHHHHHHHHHHHHTHHHHHSSCHHHHTTTHHHHHHHHHSS----SCHHHHHHHHHHHHHHHHHHTTSSGGGHH
T ss_pred HhccCCCHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHhcC----CCHHHHHHHHHHHHHHHHHhhhhhhhHHH
Confidence 44566788888888888877765322111111123567777777765 67999999999999996543222221224
Q ss_pred cchHHHHHHhccCcHH--HHHHHHHHHhc---cCchhhHHHhhhCcHHHHHHhhc---CCCHHHHHHHHHHHHHhcc--C
Q 036199 468 DLFSLLASFLHSAAAT--EETLAILVALS---SYAYFISKIVASGALASILNMLD---SPNGKFQELAIKILHNLSS--D 537 (710)
Q Consensus 468 gaI~~LV~lL~s~~~~--~~Aa~~L~~Ls---~~~~nk~~I~~~GaI~~LV~LL~---~~~~~~~~~A~~aL~nLs~--~ 537 (710)
..++.|+..+...... ..+..++..++ ...-++..+. ...++.++..+. +.+. ....+..+|..+.. .
T Consensus 519 ~il~~l~~~l~~~~~~~~~~~~~al~~l~~~~~~~~~~~~~~-~~l~~~l~~~~~~~~~~~~-~~~~~le~l~~i~~~~~ 596 (888)
T d1qbkb_ 519 YILDTLVFAFSKYQHKNLLILYDAIGTLADSVGHHLNKPEYI-QMLMPPLIQKWNMLKDEDK-DLFPLLECLSSVATALQ 596 (888)
T ss_dssp HHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHGGGGCSHHHH-HHHHHHHHHHHTTSCTTCT-THHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhhhccccchHHH-HHHHHHHHHHHHhcccchH-HHHHHHHHHHHHHHHhH
Confidence 5677777777665432 23333333332 1111121111 123455555442 2222 12223333433332 1
Q ss_pred cccccccccccchhchHHhh-------------------cCchHHHHHHHHHHHHhcC-cchHHHHHhhcCChHHHHHHh
Q 036199 538 VDIQSHIAPSEFLPKLVPFL-------------------KDATLAVSCLVILKNMCNT-EHARVCVVETSGCLPSVAELL 597 (710)
Q Consensus 538 ~en~~~iv~aG~V~~Lv~lL-------------------~~~~~~~~al~iL~nLa~~-~e~r~~i~~~~g~I~~Lv~lL 597 (710)
......+ ...++.++.++ .+.+....++.++..++.. ...-..++.....++.+...+
T Consensus 597 ~~~~~~~--~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~~l~~~~~~~~~~~~l~~~l~~~l 674 (888)
T d1qbkb_ 597 SGFLPYC--EPVYQRCVNLVQKTLAQAMLNNAQPDQYEAPDKDFMIVALDLLSGLAEGLGGNIEQLVARSNILTLMYQCM 674 (888)
T ss_dssp TTTHHHH--HHHHHHHHHHHHHHHHHHHHHHHCTTTSCCCCTHHHHHHHHHHHHHHHHHTTTTHHHHHTSCHHHHHHHHH
T ss_pred HHHhhhH--HHHHHHHHHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHHHHhhhhhhhhhhHhhHHHHHHHHh
Confidence 1111100 00111111111 1134456667777777651 222223333245677788888
Q ss_pred hcCCHHHHHHHHHHHHHHhcCChHHHHHHHhCCchHHHHHHhhcCCHHHHHHHHHHHHHhhhc
Q 036199 598 EIGSEEDQEHAVAILLCLCSQRDQYCKLVMNEGVIPSLVKISVYGNDKAKVSALELRRLLRDV 660 (710)
Q Consensus 598 ~~~s~~~ke~A~~aL~~Lc~~~~~~~~~v~~~G~v~~Lv~L~~~gt~~~k~kA~~LL~~l~~~ 660 (710)
...++.+++.|..+|..++..........+ ...++.|+.-+.+....++..|.+.+..+...
T Consensus 675 ~~~~~~vr~~a~~llgdl~~~~~~~~~~~l-~~~~~~l~~~L~~~~~~v~~~a~~~ig~ia~~ 736 (888)
T d1qbkb_ 675 QDKMPEVRQSSFALLGDLTKACFQHVKPCI-ADFMPILGTNLNPEFISVCNNATWAIGEISIQ 736 (888)
T ss_dssp TCSSHHHHHHHHHHHHHHHHHCGGGTGGGH-HHHHHHHHHTCCGGGHHHHHHHHHHHHHHHHH
T ss_pred CCCChHHHHHHHHHHHHHHHhhhHHHHHHH-HHHHHHHHHHhCcCCHHHHHHHHHHHHHHHHH
Confidence 889999999999999888765533211111 12466777777778888999999988766544
|
| >d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.55 E-value=0.076 Score=58.99 Aligned_cols=257 Identities=11% Similarity=0.087 Sum_probs=157.0
Q ss_pred hhhcCCCHHHHHHHHHHHHHHHccCcccchhcccCCcHHHHHHHhhccccCCCHHHHHHHHHHHHHHhccCCC-------
Q 036199 388 SRLTELNWDCQCKVIEDYETRLEHDNQVSHSLSSTNFVEPLIRFLRDARDLHDSRAQRIGCRLLLAFVSKNRS------- 460 (710)
Q Consensus 388 ~~L~s~~~e~q~~Al~~L~~Lak~~~~~r~~I~~~G~I~~LV~lL~s~~~~~d~~~q~~A~~~L~nL~~~~~~------- 460 (710)
....+.+.+.+..|-..|..+.+.+. .|++..|...+.+. +.+..++..|+..|.|.......
T Consensus 8 ~~~~s~d~~~r~~Ae~~L~~~~~~~~--------~~f~~~L~~i~~~~--~~~~~iR~~A~i~lKn~i~~~~~~~~~~~~ 77 (876)
T d1qgra_ 8 EKTVSPDRLELEAAQKFLERAAVENL--------PTFLVELSRVLANP--GNSQVARVAAGLQIKNSLTSKDPDIKAQYQ 77 (876)
T ss_dssp HGGGCSCHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHCT--TSCHHHHHHHHHHHHHHHCCSSHHHHHHHH
T ss_pred HHHhCcCHHHHHHHHHHHHHHHhcCh--------hHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHhhccccchhhhhh
Confidence 34445677777778777777665432 46888999988762 34677888888889887542211
Q ss_pred ----CCc-cccccchHHHHHHhccCcHH-HHHHHHHHHhccCchhhHHHhh-hCcHHHHHHhhcCC--CHHHHHHHHHHH
Q 036199 461 ----GIP-YLNEDLFSLLASFLHSAAAT-EETLAILVALSSYAYFISKIVA-SGALASILNMLDSP--NGKFQELAIKIL 531 (710)
Q Consensus 461 ----k~~-i~~~gaI~~LV~lL~s~~~~-~~Aa~~L~~Ls~~~~nk~~I~~-~GaI~~LV~LL~~~--~~~~~~~A~~aL 531 (710)
... -........++..|.+++.. ..++.++..++..+-.. .. .+.+|.|+..+.++ +...+..++.+|
T Consensus 78 ~~~~~i~~~~k~~ik~~ll~~l~~~~~~~~~~a~~i~~i~~~~~p~---~~Wpeli~~L~~~l~~~~~~~~~~~~~l~~l 154 (876)
T d1qgra_ 78 QRWLAIDANARREVKNYVLHTLGTETYRPSSASQCVAGIACAEIPV---NQWPELIPQLVANVTNPNSTEHMKESTLEAI 154 (876)
T ss_dssp HHHHTSCHHHHHHHHHHHHHHTTTCCSSSCHHHHHHHHHHHHHGGG---TCCTTHHHHHHHHHHCTTCCHHHHHHHHHHH
T ss_pred cccccCCHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHCCc---cccHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Confidence 000 01233456677777765532 34555665555322100 11 46799999988554 467888889999
Q ss_pred HHhccCccc-ccccccccchhchHHhhcC----chHHHHHHHHHHHHhcCcchHH--HHHhhcCChHHHHHHhhcCCHHH
Q 036199 532 HNLSSDVDI-QSHIAPSEFLPKLVPFLKD----ATLAVSCLVILKNMCNTEHARV--CVVETSGCLPSVAELLEIGSEED 604 (710)
Q Consensus 532 ~nLs~~~en-~~~iv~aG~V~~Lv~lL~~----~~~~~~al~iL~nLa~~~e~r~--~i~~~~g~I~~Lv~lL~~~s~~~ 604 (710)
..++..-.. ...-.-...++.++..+.+ ..+...|+.++.++........ .... .-.++.+...+...+++.
T Consensus 155 ~~i~~~~~~~~~~~~~~~il~~i~~~l~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~-~~i~~~l~~~~~~~~~~v 233 (876)
T d1qgra_ 155 GYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESER-HFIMQVVCEATQCPDTRV 233 (876)
T ss_dssp HHHHHHSCHHHHGGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSHHHH-HHHHHHHHHHTTCSSHHH
T ss_pred HHHHHHCCHHHHHHHHHHHHHHHHHHHcCcCccHHHHHHHHHHHHHHHHHhhhhhhHHHHH-HHHHHHHHHHhcCCCHHH
Confidence 888742111 1111123466777777743 2467777777777655322111 1111 123456666777889999
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHhCCchHHHHHHhhcCCHHHHHHHHHHHHHhh
Q 036199 605 QEHAVAILLCLCSQRDQYCKLVMNEGVIPSLVKISVYGNDKAKVSALELRRLLR 658 (710)
Q Consensus 605 ke~A~~aL~~Lc~~~~~~~~~v~~~G~v~~Lv~L~~~gt~~~k~kA~~LL~~l~ 658 (710)
+..|+.+|..++...++.....+...+.+.+.....+..+..+..|...+..+.
T Consensus 234 ~~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~ 287 (876)
T d1qgra_ 234 RVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVC 287 (876)
T ss_dssp HHHHHHHHHHHHHHSGGGCHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHH
Confidence 999999999998776554444444555666666677777777777776655443
|
| >d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Karyopherin beta2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.49 E-value=0.11 Score=58.88 Aligned_cols=263 Identities=14% Similarity=0.102 Sum_probs=146.3
Q ss_pred hhhcCCCHHHHHHHHHHHHHHHccCcccchhcccCCcHHHHHHHhhccccCCCHHHHHHHHHHHHHHhccC-CCCCcccc
Q 036199 388 SRLTELNWDCQCKVIEDYETRLEHDNQVSHSLSSTNFVEPLIRFLRDARDLHDSRAQRIGCRLLLAFVSKN-RSGIPYLN 466 (710)
Q Consensus 388 ~~L~s~~~e~q~~Al~~L~~Lak~~~~~r~~I~~~G~I~~LV~lL~s~~~~~d~~~q~~A~~~L~nL~~~~-~~k~~i~~ 466 (710)
..+.+.+|..+..|+..+..++....+..... -...++.|+..|.+ .++.++..++.+|..++... .....-.-
T Consensus 402 ~~l~s~~~~~reaa~~alg~i~eg~~~~~~~~-l~~li~~l~~~l~d----~~~~Vr~~a~~~l~~~~~~~~~~~~~~~~ 476 (888)
T d1qbkb_ 402 ELLFHHEWVVKESGILVLGAIAEGCMQGMIPY-LPELIPHLIQCLSD----KKALVRSITCWTLSRYAHWVVSQPPDTYL 476 (888)
T ss_dssp HTTTSSSHHHHHHHHHHHHHHTTTSHHHHTTT-HHHHHHHHHHHTTS----SCHHHHHHHHHHHHHTHHHHHSSCHHHHT
T ss_pred HhhccchhHHHHHHHHHhhhhhhhHHHHhccc-chhhhHHHHHhccC----CCHHHHHHHHHHHHHHHHHhhhhhhhhhh
Confidence 45677889988888888888876544322111 02345666666655 78999999999998875421 11111113
Q ss_pred ccchHHHHHHhccCcHH--HHHHHHHHHhccCchhhHHHh--hhCcHHHHHHhhcCCCHHHHHHHHHHHHHhccC---cc
Q 036199 467 EDLFSLLASFLHSAAAT--EETLAILVALSSYAYFISKIV--ASGALASILNMLDSPNGKFQELAIKILHNLSSD---VD 539 (710)
Q Consensus 467 ~gaI~~LV~lL~s~~~~--~~Aa~~L~~Ls~~~~nk~~I~--~~GaI~~LV~LL~~~~~~~~~~A~~aL~nLs~~---~e 539 (710)
...++.++..+.+++.. +.|+.+|.++..... ..+. -...++.|+..+...+......+..++..++.. .-
T Consensus 477 ~~~l~~ll~~l~d~~~~V~~~a~~al~~l~~~~~--~~l~p~~~~il~~l~~~l~~~~~~~~~~~~~al~~l~~~~~~~~ 554 (888)
T d1qbkb_ 477 KPLMTELLKRILDSNKRVQEAACSAFATLEEEAC--TELVPYLAYILDTLVFAFSKYQHKNLLILYDAIGTLADSVGHHL 554 (888)
T ss_dssp TTHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHT--TSSGGGHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHGGGG
T ss_pred hhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhh--hhhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhhhccc
Confidence 46788888888777653 688888888763211 1111 134577788888877777776666666666531 11
Q ss_pred cccccccccchhchHHhhc----CchHHHHHHHHHHHHhc--CcchHH---HHHhhcCChHHHHHHh--------h----
Q 036199 540 IQSHIAPSEFLPKLVPFLK----DATLAVSCLVILKNMCN--TEHARV---CVVETSGCLPSVAELL--------E---- 598 (710)
Q Consensus 540 n~~~iv~aG~V~~Lv~lL~----~~~~~~~al~iL~nLa~--~~e~r~---~i~~~~g~I~~Lv~lL--------~---- 598 (710)
++.... ...++.++.... +.......+..|..++. ...... .+.+ .++..+...+ .
T Consensus 555 ~~~~~~-~~l~~~l~~~~~~~~~~~~~~~~~le~l~~i~~~~~~~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~ 631 (888)
T d1qbkb_ 555 NKPEYI-QMLMPPLIQKWNMLKDEDKDLFPLLECLSSVATALQSGFLPYCEPVYQ--RCVNLVQKTLAQAMLNNAQPDQY 631 (888)
T ss_dssp CSHHHH-HHHHHHHHHHHTTSCTTCTTHHHHHHHHHHHHHHSTTTTHHHHHHHHH--HHHHHHHHHHHHHHHHHHCTTTS
T ss_pred cchHHH-HHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhHHHHhhhHHHHHH--HHHHHHHHHHHHHHHHhcccccc
Confidence 111111 123334444331 22223334444554443 111111 1111 0111111111 1
Q ss_pred -cCCHHHHHHHHHHHHHHhcCC-hHHHHHHHhCCchHHHHHHhhcCCHHHHHHHHHHHHHhhhc
Q 036199 599 -IGSEEDQEHAVAILLCLCSQR-DQYCKLVMNEGVIPSLVKISVYGNDKAKVSALELRRLLRDV 660 (710)
Q Consensus 599 -~~s~~~ke~A~~aL~~Lc~~~-~~~~~~v~~~G~v~~Lv~L~~~gt~~~k~kA~~LL~~l~~~ 660 (710)
..+......+..++..+...- ......+.....++.+...+.+.++.+|..|..++.-+...
T Consensus 632 ~~~~~~~~~~~l~~l~~l~~~l~~~~~~~~~~~~l~~~l~~~l~~~~~~vr~~a~~llgdl~~~ 695 (888)
T d1qbkb_ 632 EAPDKDFMIVALDLLSGLAEGLGGNIEQLVARSNILTLMYQCMQDKMPEVRQSSFALLGDLTKA 695 (888)
T ss_dssp CCCCTHHHHHHHHHHHHHHHHHTTTTHHHHHTSCHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHHHHHhhhhhhhhhhHhhHHHHHHHHhCCCChHHHHHHHHHHHHHHHh
Confidence 124445556666666665322 12334455566788888889999999999999988766544
|
| >d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120) species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.40 E-value=0.2 Score=58.26 Aligned_cols=258 Identities=13% Similarity=0.093 Sum_probs=152.8
Q ss_pred CCHHHHHHHHHHHHHHHccCcccchhcccCCcHHHHHHHhhccccCCCHHHHHHHHHHHHHHhccCCCCCccccccchHH
Q 036199 393 LNWDCQCKVIEDYETRLEHDNQVSHSLSSTNFVEPLIRFLRDARDLHDSRAQRIGCRLLLAFVSKNRSGIPYLNEDLFSL 472 (710)
Q Consensus 393 ~~~e~q~~Al~~L~~Lak~~~~~r~~I~~~G~I~~LV~lL~s~~~~~d~~~q~~A~~~L~nL~~~~~~k~~i~~~gaI~~ 472 (710)
.++..+..++..+..++......-.. .....++.|+..|.+ .+..+++.|+.+|..++...... .-...++.
T Consensus 143 ~~~~v~~~al~~l~~l~~~~g~~l~~-~~~~il~~l~~~l~~----~~~~vR~~A~~~l~~l~~~~~~~---~~~~~~~~ 214 (1207)
T d1u6gc_ 143 EDVSVQLEALDIMADMLSRQGGLLVN-FHPSILTCLLPQLTS----PRLAVRKRTIIALGHLVMSCGNI---VFVDLIEH 214 (1207)
T ss_dssp SCHHHHHHHHHHHHHHHHHTCSSCTT-THHHHHHHHGGGGGC----SSHHHHHHHHHHHHHHTTTC-------CTTHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHhhHhhHH-HHHHHHHHHHHHhCC----CCHHHHHHHHHHHHHHHHHCCHH---HHHHHHHH
Confidence 35677888888888777654321110 012244444444544 67889999999999986432211 12345777
Q ss_pred HHHHhccCcH---HHHHHHHHHHhccCchhhHHHhh--hCcHHHHHHhhcCCCHHHHHHHHHHHHHhccCcccccccccc
Q 036199 473 LASFLHSAAA---TEETLAILVALSSYAYFISKIVA--SGALASILNMLDSPNGKFQELAIKILHNLSSDVDIQSHIAPS 547 (710)
Q Consensus 473 LV~lL~s~~~---~~~Aa~~L~~Ls~~~~nk~~I~~--~GaI~~LV~LL~~~~~~~~~~A~~aL~nLs~~~en~~~iv~a 547 (710)
++..|..... ...++.++..++..... .+.. ...+|.+++.+.+.+.+.++.++.++..+...-.+...-.-.
T Consensus 215 ll~~l~~~~~~~~~~~~~~~l~~l~~~~~~--~~~~~l~~i~~~l~~~l~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~ 292 (1207)
T d1u6gc_ 215 LLSELSKNDSMSTTRTYIQCIAAISRQAGH--RIGEYLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCPKEVYPHVS 292 (1207)
T ss_dssp HHHHHHHTCSSCSCTTHHHHHHHHHHHSSG--GGTTSCTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHCTTCCCHHHHH
T ss_pred HHHHHccCCCHHHHHHHHHHHHHHHHHcch--hhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhChhhhhhhHH
Confidence 7776654322 24566666666532211 2232 567999999999999999999999998886432211100001
Q ss_pred cchhchHHhh-------------------------------------cC--chHHHHHHHHHHHHhcC-cchHHHHHhhc
Q 036199 548 EFLPKLVPFL-------------------------------------KD--ATLAVSCLVILKNMCNT-EHARVCVVETS 587 (710)
Q Consensus 548 G~V~~Lv~lL-------------------------------------~~--~~~~~~al~iL~nLa~~-~e~r~~i~~~~ 587 (710)
..++.++..+ .+ ..++..++.+|..+... ++.-..+..
T Consensus 293 ~ii~~~l~~l~~dp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~s~~vR~~a~~~L~~l~~~~~~~l~~~~~-- 370 (1207)
T d1u6gc_ 293 TIINICLKYLTYDPNYNYDDEDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLPEFYK-- 370 (1207)
T ss_dssp HHHHHHTTCCCCC------------------------------------CTTHHHHHHHHHHHHHHTTCCTTHHHHHT--
T ss_pred HHHHHHHHHHhcCcchhhhhHHHHHhhhhhhccchhhhhHHHHHhhhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHH--
Confidence 1111111111 01 12466778888888764 444444443
Q ss_pred CChHHHHHHhhcCCHHHHHHHHHHHHHHhcCChH----------------HHHHH--HhCCchHHHHHHhhcCCHHHHHH
Q 036199 588 GCLPSVAELLEIGSEEDQEHAVAILLCLCSQRDQ----------------YCKLV--MNEGVIPSLVKISVYGNDKAKVS 649 (710)
Q Consensus 588 g~I~~Lv~lL~~~s~~~ke~A~~aL~~Lc~~~~~----------------~~~~v--~~~G~v~~Lv~L~~~gt~~~k~k 649 (710)
..++.|+..+...++.++..++.++..+...... ....+ .-..+++.+.....+.+...+..
T Consensus 371 ~~~~~L~~~l~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~l~~~~~~~r~~ 450 (1207)
T d1u6gc_ 371 TVSPALISRFKEREENVKADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQVPNIVKALHKQMKEKSVKTRQC 450 (1207)
T ss_dssp TTHHHHHSTTSCSSSHHHHHHHHHHHHHHHHHCCC------------CCCHHHHHHHHTTHHHHHHHHHTTCSCHHHHHH
T ss_pred HHHHHHHHHhcCCchHHHHHHHHHHHHHHHhccchhhhhhchHHHHhhcchHHHHHHHhHHHHHHHHHHhcCCchhHHHH
Confidence 5789999999888889999988888766532100 00111 11234566777788889999999
Q ss_pred HHHHHHHhhhccC
Q 036199 650 ALELRRLLRDVAY 662 (710)
Q Consensus 650 A~~LL~~l~~~~~ 662 (710)
|..++..+-....
T Consensus 451 ~~~~l~~l~~~~~ 463 (1207)
T d1u6gc_ 451 CFNMLTELVNVLP 463 (1207)
T ss_dssp HHHHHHHHHHHST
T ss_pred HHHHHHHHHHHcc
Confidence 9888887655433
|
| >d1ho8a_ a.118.1.9 (A:) Regulatory subunit H of the V-type ATPase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Regulatory subunit H of the V-type ATPase domain: Regulatory subunit H of the V-type ATPase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.17 E-value=0.78 Score=47.77 Aligned_cols=236 Identities=17% Similarity=0.212 Sum_probs=149.2
Q ss_pred CCcHHHHHHHhhccccCCCHHHHHHHHHHHHHHhccCCCCCccc---c---ccchHHHHHHhccCcHH--HHHHHHHHHh
Q 036199 422 TNFVEPLIRFLRDARDLHDSRAQRIGCRLLLAFVSKNRSGIPYL---N---EDLFSLLASFLHSAAAT--EETLAILVAL 493 (710)
Q Consensus 422 ~G~I~~LV~lL~s~~~~~d~~~q~~A~~~L~nL~~~~~~k~~i~---~---~gaI~~LV~lL~s~~~~--~~Aa~~L~~L 493 (710)
..++..++++|+.. ...++.+..+.++-.+..++....... . .-.-+++..+|.+++.- ..+..++..|
T Consensus 73 ~~~~~~~l~lL~~~---sk~d~vqyvL~Li~dLL~~d~~~~~~~~~~~~~~~~~~~~f~~~l~~~d~~~~~~s~~i~~ll 149 (477)
T d1ho8a_ 73 GKTLIPLIHLLSTS---DNEDCKKSVQNLIAELLSSDKYGDDTVKFFQEDPKQLEQLFDVSLKGDFQTVLISGFNVVSLL 149 (477)
T ss_dssp STTHHHHHHHHHSC---CCHHHHHHHHHHHHHHHHCSSSSHHHHHHHHHCTTHHHHHHHHCSCSSHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHhhc---CcHHHHHHHHHHHHHHHhcCcchhHHHHHHhhCccchhHHHHHhccCchhHHHHHHHHHHHHH
Confidence 34788999999863 567777787777777765443221111 1 11223444445444321 2444455555
Q ss_pred ccCchhhHHHhh--hCcHHHHHHhhcCCCHHHHHHHHHHHHHhccCccccccccc--ccchhchHHhhcC----c-----
Q 036199 494 SSYAYFISKIVA--SGALASILNMLDSPNGKFQELAIKILHNLSSDVDIQSHIAP--SEFLPKLVPFLKD----A----- 560 (710)
Q Consensus 494 s~~~~nk~~I~~--~GaI~~LV~LL~~~~~~~~~~A~~aL~nLs~~~en~~~iv~--aG~V~~Lv~lL~~----~----- 560 (710)
+..........+ ......+-.+...++.+....|+..|..|...++.|..+.. ...+++|++.|.. .
T Consensus 150 ~~~~~~~~~~~e~l~~~~~~l~~l~~~~~~~~~~i~v~~lq~llr~~~~R~~fw~~~~~~~~~l~~il~~a~~~~~~~~~ 229 (477)
T d1ho8a_ 150 VQNGLHNVKLVEKLLKNNNLINILQNIEQMDTCYVCIRLLQELAVIPEYRDVIWLHEKKFMPTLFKILQRATDSQLATRI 229 (477)
T ss_dssp TSTTTCCHHHHHHHHHCHHHHHHHHCTTCHHHHHHHHHHHHHHHTSHHHHHHHHTTHHHHHHHHHHHHHHHHC-------
T ss_pred HhccccccchHHHHHHhhHHHHHhhcccccchHHHHHHHHHHHhcCccHHHHHHHcccchHHHHHHHHHHHhcccccchh
Confidence 544332222221 11222233333677888888899999999999888887743 5567888877721 0
Q ss_pred ----------hHHHHHHHHHHHHhcCcchHHHHHhhc-CChHHHHHHhhc-CCHHHHHHHHHHHHHHhcCCh-----HHH
Q 036199 561 ----------TLAVSCLVILKNMCNTEHARVCVVETS-GCLPSVAELLEI-GSEEDQEHAVAILLCLCSQRD-----QYC 623 (710)
Q Consensus 561 ----------~~~~~al~iL~nLa~~~e~r~~i~~~~-g~I~~Lv~lL~~-~s~~~ke~A~~aL~~Lc~~~~-----~~~ 623 (710)
.+.-+++-+++.|+-+++....+..+. +.|+.|+.+++. ...++-.-++++|.|++.... ...
T Consensus 230 ~~~~~~~~~~Ql~Y~~ll~lWlLSF~~~~~~~l~~~~~~~i~~l~~i~~~s~KEKvvRv~l~~l~Nll~~~~~~~~~~~~ 309 (477)
T d1ho8a_ 230 VATNSNHLGIQLQYHSLLLIWLLTFNPVFANELVQKYLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTRVKQHKKVIK 309 (477)
T ss_dssp ------CCHHHHHHHHHHHHHHHTTSHHHHHHHHTTSHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSSSTTHHHHHH
T ss_pred hcccCCCccHHHHHHHHHHHHHHHcCHHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhhhhhhhhHHH
Confidence 247788999999999988888887621 348899998875 678888999999999997642 134
Q ss_pred HHHHhCCchHHHHHHhhcC--CHHHHHHHHHHHHHhhhc
Q 036199 624 KLVMNEGVIPSLVKISVYG--NDKAKVSALELRRLLRDV 660 (710)
Q Consensus 624 ~~v~~~G~v~~Lv~L~~~g--t~~~k~kA~~LL~~l~~~ 660 (710)
..++..++++.+-.|.... ++...+--..|-..|.+.
T Consensus 310 ~~~v~~~~l~~l~~L~~r~~~Dedl~edl~~L~~~L~~~ 348 (477)
T d1ho8a_ 310 QLLLLGNALPTVQSLSERKYSDEELRQDISNLKEILENE 348 (477)
T ss_dssp HHHHHHCHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcchhHHHHHHhcCCCCCHHHHHHHHHHHHHHHHH
Confidence 5577777776665554433 566666666665555543
|
| >d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.16 E-value=1.3 Score=48.14 Aligned_cols=265 Identities=11% Similarity=0.057 Sum_probs=136.6
Q ss_pred hhcCCCHHHHHHHHHHHHHHHccCcccchhcccCCcHHHHHHHhhccccCCCHHHHHHHHHHHHHHhccCCCCCccccc-
Q 036199 389 RLTELNWDCQCKVIEDYETRLEHDNQVSHSLSSTNFVEPLIRFLRDARDLHDSRAQRIGCRLLLAFVSKNRSGIPYLNE- 467 (710)
Q Consensus 389 ~L~s~~~e~q~~Al~~L~~Lak~~~~~r~~I~~~G~I~~LV~lL~s~~~~~d~~~q~~A~~~L~nL~~~~~~k~~i~~~- 467 (710)
.|.+.+..++..++..+..+++.+-....| +..++.|+..+.+. .+...+..|+.+|..+...........-.
T Consensus 103 ~l~~~~~~vr~~~a~~i~~i~~~~~p~~~w---peli~~L~~~~~s~---~~~~~~~~al~~l~~i~e~~~~~~~~~~~~ 176 (861)
T d2bpta1 103 ALVSIEPRIANAAAQLIAAIADIELPHGAW---PELMKIMVDNTGAE---QPENVKRASLLALGYMCESADPQSQALVSS 176 (861)
T ss_dssp HHTCSSHHHHHHHHHHHHHHHHHHGGGTCC---HHHHHHHHHHTSTT---SCHHHHHHHHHHHHHHHHTSSTTSSTTGGG
T ss_pred HHcCCCHHHHHHHHHHHHHHHHHhCCcCch---HHHHHHHHHHhcCC---CcHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 345556777777777777766532111111 23566677766552 34556677778888775432222211122
Q ss_pred --cchHHHHHHhccCc--H--HHHHHHHHHHhccCch-hhH-HHhhhCcHHHHHHhhcCCCHHHHHHHHHHHHHhccC-c
Q 036199 468 --DLFSLLASFLHSAA--A--TEETLAILVALSSYAY-FIS-KIVASGALASILNMLDSPNGKFQELAIKILHNLSSD-V 538 (710)
Q Consensus 468 --gaI~~LV~lL~s~~--~--~~~Aa~~L~~Ls~~~~-nk~-~I~~~GaI~~LV~LL~~~~~~~~~~A~~aL~nLs~~-~ 538 (710)
..+..++..+.+.. . +..|..++.++...-. +-. .......++.|...+.+++++.+..|..+|..+... +
T Consensus 177 ~~~il~~i~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~i~~~~~ 256 (861)
T d2bpta1 177 SNNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNNMEREGERNYLMQVVCEATQAEDIEVQAAAFGCLCKIMSKYY 256 (861)
T ss_dssp HHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHHHG
T ss_pred HHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHhHhHHhhhhhhHHHHhHHHHhcCCCHHHHHHHHHHHHHHHHHHH
Confidence 23344444333322 2 2567777776653221 111 111233567788888999999999999999888742 1
Q ss_pred ccccccccccchhchH-Hhhc--CchHHHHHHHHHHHHhcCcc-------------------------------------
Q 036199 539 DIQSHIAPSEFLPKLV-PFLK--DATLAVSCLVILKNMCNTEH------------------------------------- 578 (710)
Q Consensus 539 en~~~iv~aG~V~~Lv-~lL~--~~~~~~~al~iL~nLa~~~e------------------------------------- 578 (710)
+.-...+ ...+..+. .... ++.+...++..+..++....
T Consensus 257 ~~~~~~l-~~~l~~l~~~~~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~l~~~l~~ 335 (861)
T d2bpta1 257 TFMKPYM-EQALYALTIATMKSPNDKVASMTVEFWSTICEEEIDIAYELAQFPQSPLQSYNFALSSIKDVVPNLLNLLTR 335 (861)
T ss_dssp GGCHHHH-HHTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCSCCCCCHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHH-HHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1110000 01111111 1111 12233333333332221100
Q ss_pred -----------hHHHH-------Hh--hcCChHHHHH----HhhcCCHHHHHHHHHHHHHHhcCChHHHHHHHhCCchHH
Q 036199 579 -----------ARVCV-------VE--TSGCLPSVAE----LLEIGSEEDQEHAVAILLCLCSQRDQYCKLVMNEGVIPS 634 (710)
Q Consensus 579 -----------~r~~i-------~~--~~g~I~~Lv~----lL~~~s~~~ke~A~~aL~~Lc~~~~~~~~~v~~~G~v~~ 634 (710)
.+... .. ....++.+.. .+...+...++.|+.++..+..........-.-..+++.
T Consensus 336 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~i~~~~~~~~~~~~l~~~l~~ 415 (861)
T d2bpta1 336 QNEDPEDDDWNVSMSAGACLQLFAQNCGNHILEPVLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYVHQALPS 415 (861)
T ss_dssp CCCC-CCCCCHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHH
T ss_pred hhccccchhHHHHHHHHHHHHHHHhhcchhhhhhhcchhhhhhhhHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHH
Confidence 00000 00 0112222222 333567777888888888877655332222222346788
Q ss_pred HHHHhhcCCHHHHHHHHHHHHHhhhc
Q 036199 635 LVKISVYGNDKAKVSALELRRLLRDV 660 (710)
Q Consensus 635 Lv~L~~~gt~~~k~kA~~LL~~l~~~ 660 (710)
++..+.+.++.+|..|.+.+..+...
T Consensus 416 l~~~l~d~~~~vr~~a~~~l~~l~~~ 441 (861)
T d2bpta1 416 ILNLMNDQSLQVKETTAWCIGRIADS 441 (861)
T ss_dssp HHHGGGCSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCcchhhhhHHHHHHHHHHHH
Confidence 88889999999999999988876654
|
| >d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.01 E-value=0.86 Score=49.97 Aligned_cols=261 Identities=12% Similarity=0.098 Sum_probs=144.9
Q ss_pred CHHHHHHHHHHHHHHHccCcccchhcccCCcHHHHHHHhhccccCCCHHHHHHHHHHHHHHhccCCC--CCccccccchH
Q 036199 394 NWDCQCKVIEDYETRLEHDNQVSHSLSSTNFVEPLIRFLRDARDLHDSRAQRIGCRLLLAFVSKNRS--GIPYLNEDLFS 471 (710)
Q Consensus 394 ~~e~q~~Al~~L~~Lak~~~~~r~~I~~~G~I~~LV~lL~s~~~~~d~~~q~~A~~~L~nL~~~~~~--k~~i~~~gaI~ 471 (710)
+...+..++..+..++++-......-.....++.++..+.+. ..+..++..|+.++.+....... .......-.++
T Consensus 143 ~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~il~~i~~~l~~~--~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~i~~ 220 (876)
T d1qgra_ 143 TEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKE--EPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQ 220 (876)
T ss_dssp CHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHSTT--CSCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHcCc--CccHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHH
Confidence 345566677777777653221111111234677788877652 24578888888888876432110 01111122455
Q ss_pred HHHHHhccCcHH--HHHHHHHHHhcc-CchhhHHHhhhCcHHHHHHhhcCCCHHHHHHHHHHHHHhccCc----------
Q 036199 472 LLASFLHSAAAT--EETLAILVALSS-YAYFISKIVASGALASILNMLDSPNGKFQELAIKILHNLSSDV---------- 538 (710)
Q Consensus 472 ~LV~lL~s~~~~--~~Aa~~L~~Ls~-~~~nk~~I~~~GaI~~LV~LL~~~~~~~~~~A~~aL~nLs~~~---------- 538 (710)
.+...+.+++.. ..+..+|..+.. ..+.-.........+.+...+.+...++...+...+..++...
T Consensus 221 ~l~~~~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 300 (876)
T d1qgra_ 221 VVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEA 300 (876)
T ss_dssp HHHHHTTCSSHHHHHHHHHHHHHHHHHSGGGCHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 566666666653 477777776653 2222222222344556666777888888877777666654311
Q ss_pred -------cccccccccc----chhchHHhhcC---------chHHHHHHHHHHHHhcCcchHHHHHhhcCChHHHHHHhh
Q 036199 539 -------DIQSHIAPSE----FLPKLVPFLKD---------ATLAVSCLVILKNMCNTEHARVCVVETSGCLPSVAELLE 598 (710)
Q Consensus 539 -------en~~~iv~aG----~V~~Lv~lL~~---------~~~~~~al~iL~nLa~~~e~r~~i~~~~g~I~~Lv~lL~ 598 (710)
.......... .++.+...+.. ..+...|..+|..++..... .+.. ..++.+...+.
T Consensus 301 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~--~~~~--~~~~~i~~~l~ 376 (876)
T d1qgra_ 301 AEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCED--DIVP--HVLPFIKEHIK 376 (876)
T ss_dssp HHHSSCCSSCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHGG--GGHH--HHHHHHHHHTT
T ss_pred HHhhhhHHHHHHHHHHHHHHHHHHhhHHHHHhcccccccccchHHHHHHHHHHHHHHHhhh--hhhh--hhHHHHHHhhc
Confidence 1111111112 23333333311 12456666666666542211 1111 12344555566
Q ss_pred cCCHHHHHHHHHHHHHHhcCChHHHHHHHhCCchHHHHHHhhcCCHHHHHHHHHHHHHhhhc
Q 036199 599 IGSEEDQEHAVAILLCLCSQRDQYCKLVMNEGVIPSLVKISVYGNDKAKVSALELRRLLRDV 660 (710)
Q Consensus 599 ~~s~~~ke~A~~aL~~Lc~~~~~~~~~v~~~G~v~~Lv~L~~~gt~~~k~kA~~LL~~l~~~ 660 (710)
+.+...++.++.+|..+..........-.-..+++.++..+.+.+++++..|.+.+..+.+.
T Consensus 377 ~~~~~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~d~~~~vr~~a~~~l~~~~~~ 438 (876)
T d1qgra_ 377 NPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICEL 438 (876)
T ss_dssp CSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHHHH
Confidence 78889999999888887765432222222334678888889999999999999998877655
|
| >d1upka_ a.118.1.15 (A:) Mo25 protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Mo25 protein domain: Mo25 protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.09 E-value=3.5 Score=40.36 Aligned_cols=155 Identities=15% Similarity=0.155 Sum_probs=123.4
Q ss_pred HHhhhCcHHHHHHhhcCCCHHHHHHHHHHHHHhccCc-ccccc----cc-cccchhchHHhhcCchHHHHHHHHHHHHhc
Q 036199 502 KIVASGALASILNMLDSPNGKFQELAIKILHNLSSDV-DIQSH----IA-PSEFLPKLVPFLKDATLAVSCLVILKNMCN 575 (710)
Q Consensus 502 ~I~~~GaI~~LV~LL~~~~~~~~~~A~~aL~nLs~~~-en~~~----iv-~aG~V~~Lv~lL~~~~~~~~al~iL~nLa~ 575 (710)
.|...+.+..|+..|..-+-+++++++.+..+|-... +++.- ++ ...++..|+.--.++++.-.|-.+|+....
T Consensus 64 e~~~~d~l~~Li~~L~~L~fE~RKD~~~if~~llR~~~~~~~p~v~Yl~~~~eil~~L~~gye~~eiAl~~G~mLREcik 143 (330)
T d1upka_ 64 ELYNSGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGYESPEIALNCGIMLRECIR 143 (330)
T ss_dssp HHHHHSHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHGGGSTTTHHHHHHHHHHHHT
T ss_pred HHHHhChHHHHHHhCCCCCCchhhhHHHHHHHHhhcCCCCCCccHHHHHcCHHHHHHHHhhcCCcchhhhhhHHHHHHHh
Confidence 4456788999999999999999999999999998643 33322 22 245555566655778898999999999999
Q ss_pred CcchHHHHHhhcCChHHHHHHhhcCCHHHHHHHHHHHHHHhcCChHHHHHHHhCC---chHHHHHHhhcCCHHHHHHHHH
Q 036199 576 TEHARVCVVETSGCLPSVAELLEIGSEEDQEHAVAILLCLCSQRDQYCKLVMNEG---VIPSLVKISVYGNDKAKVSALE 652 (710)
Q Consensus 576 ~~e~r~~i~~~~g~I~~Lv~lL~~~s~~~ke~A~~aL~~Lc~~~~~~~~~v~~~G---~v~~Lv~L~~~gt~~~k~kA~~ 652 (710)
++.-...|.. ...+..+.+.+..++-++...|...+..|-..+.......+... .+...-.|+.+++--+|+.+.+
T Consensus 144 ~e~lak~iL~-s~~f~~fF~yv~~~~FdiasDAf~TfkelLt~hk~~~aefl~~Nyd~Ff~~~~~LL~s~NYVtrRqSlK 222 (330)
T d1upka_ 144 HEPLAKIILW-SEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQSLK 222 (330)
T ss_dssp SHHHHHHHHH-SGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHHHHHH
T ss_pred hHHHHHHHHc-cHHHHHHHHHHcCCchHHHHHHHHHHHHHHHhCHHHHHHHHHHhHHHHHHHHHHHhcCCchHHHHHHHH
Confidence 9988888887 56789999999999999999999999888887766555655544 3556677899999999999999
Q ss_pred HHHHh
Q 036199 653 LRRLL 657 (710)
Q Consensus 653 LL~~l 657 (710)
||.-+
T Consensus 223 LLgel 227 (330)
T d1upka_ 223 LLGEL 227 (330)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 99833
|
| >d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Leucine-rich repeat variant domain: Leucine-rich repeat variant species: Azotobacter vinelandii [TaxId: 354]
Probab=83.15 E-value=0.44 Score=45.20 Aligned_cols=123 Identities=10% Similarity=-0.008 Sum_probs=64.1
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHhccCcccccccccccchhchHHhhcCchH--HHHHHH-----HHHHHhc--CcchH
Q 036199 510 ASILNMLDSPNGKFQELAIKILHNLSSDVDIQSHIAPSEFLPKLVPFLKDATL--AVSCLV-----ILKNMCN--TEHAR 580 (710)
Q Consensus 510 ~~LV~LL~~~~~~~~~~A~~aL~nLs~~~en~~~iv~aG~V~~Lv~lL~~~~~--~~~al~-----iL~nLa~--~~e~r 580 (710)
+.|..++.+++..++..++..| ..+.|..++.|++. ...++. +|..|.. .++-|
T Consensus 93 ~~L~~L~~D~d~~VR~~aa~~l-----------------~~~~L~~Ll~D~d~~VR~~aa~~~~~~~L~~L~~D~d~~VR 155 (233)
T d1lrva_ 93 EQLSALMFDEDREVRITVADRL-----------------PLEQLEQMAADRDYLVRAYVVQRIPPGRLFRFMRDEDRQVR 155 (233)
T ss_dssp GGGGGTTTCSCHHHHHHHHHHS-----------------CTGGGGGGTTCSSHHHHHHHHHHSCGGGGGGTTTCSCHHHH
T ss_pred HHHHHHhcCCChhHHHHHHhcc-----------------CHHHHHHHhcCCCHHHHHHHHhccchhHHHHHhcCCCHHHH
Confidence 4566666777777776665432 13556666655432 222211 2222333 23344
Q ss_pred HHHHhhcCChHHHHHHhhcCCHHHHHHHHHHH-----HHHhcCC-hHHHHHHHhCCchHHHHHHhhcCCHHHHHHHH
Q 036199 581 VCVVETSGCLPSVAELLEIGSEEDQEHAVAIL-----LCLCSQR-DQYCKLVMNEGVIPSLVKISVYGNDKAKVSAL 651 (710)
Q Consensus 581 ~~i~~~~g~I~~Lv~lL~~~s~~~ke~A~~aL-----~~Lc~~~-~~~~~~v~~~G~v~~Lv~L~~~gt~~~k~kA~ 651 (710)
..+.. .-+.+.|..++...++.++..++..| ..+.... ...+..+.+.. .+.++..+.+.++.+++.|.
T Consensus 156 ~~aA~-~~~~~~L~~l~~D~d~~VR~~aa~~L~~~~L~~l~~D~d~~VR~aaae~~-~~~ll~~L~D~d~~VR~aA~ 230 (233)
T d1lrva_ 156 KLVAK-RLPEESLGLMTQDPEPEVRRIVASRLRGDDLLELLHDPDWTVRLAAVEHA-SLEALRELDEPDPEVRLAIA 230 (233)
T ss_dssp HHHHH-HSCGGGGGGSTTCSSHHHHHHHHHHCCGGGGGGGGGCSSHHHHHHHHHHS-CHHHHHHCCCCCHHHHHHHH
T ss_pred HHHHH-hcCHHHHHHHccCCCHHHHHHHHHhcCcHHHHHHHhCCCHHHHHHHHHhc-cHHHHHHhCCCCHHHHHHHH
Confidence 55554 34566777777777888877777543 2333322 23344444432 24445555666666666654
|