Citrus Sinensis ID: 036217

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190------
Protein Sequence
MIPKIRETSDPVGRVDFWPNQEQKLESVHSPEAFEMIQSHLSLVLGERLVGPLDTIIQISKIKLGKLYAASIMYDSLIRIPPNDDGTVGESFMDGGEGKSYRLRSYVMYLDAETLQRYATIRSKEAISLIEKQTQALFGRPDIRVLEDGSIDTSKDEVISVTFLGLTMLVLEAVAFGSFMWDSESYVESKYPFIKS
Secondary Structure (PSIPRED)
ccccccccccccccccccccccHHHHccccHHHHHHHHHHHHHHHccccccccccEEEEEcccccEEHHHHHHHHHHccccccccccccccccccccccccHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEEccccccccccccEEEEEccHHHHHHHHHHHHccccHHHHHHcccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccEccccccHHHHHHcccHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccEEEEccccEccccccEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHcHEEEccc
Coil and Loop (DISEMBL)
mipkiretsdpvgrvdfwpnqeqklesvhspEAFEMIQSHLSLVLGerlvgpldtiIQISKIKLGKLYAASIMYdslirippnddgtvgesfmdggegksyRLRSYVMYLDAETLQRYATIRSKEAISLIEKQTQalfgrpdirvledgsidtskdeVISVTFLGLTMLVLEAVAFGsfmwdsesyveskypfiks
Flexible Loop (DISEMBL)
mipkiretsdpvgrvdfwpNQEQKLESVHSPEAFEMIQSHLSLVLGERLVGPLDTIIQISKIKLGKLYAASIMYDSLIRIPPNDDGTVGESfmdggegksyRLRSYVMYLDAETLQRYATIRSKEAISLIEKqtqalfgrpdirvledgsidtskdeVISVTFLGLTMLVLEAVAFGSfmwdsesyveskypfiks
Low Complexity Region (SEG)
MIPKIRETSDPVGRVDFWPNQEQKLESVHSPEAFEMIQSHLSLVLGERLVGPLDTIIQISKIKLGKLYAASIMYDSLIRIPPNDDGTVGESFMDGGEGKSYRLRSYVMYLDAETLQRYATIRSKEAISLIEKQTQALFGRPDIRVLEDGSIDTSKDEVISVTFLGLTMLVLEAVAFGSFMWDSESYVESKYPFIKS
Disordered region (IsUnstruct)
********************************AFEMIQSHLSLVLGERLVGPLDTIIQISKIKLGKLYAASIMYDSLIRIPPNDDGTVGESFMDGGEGKSYRLRSYVMYLDAETLQRYATIRSKEAISLIEKQTQALFGRPDIRVLEDGSIDTSKDEVISVTFLGLTMLVLEAVAFGSFMWDSESYVESKY*****
Disordered Region (DISOPRED)
*IPK*****D****VDFWPNQEQKLESVHSPEAFEMIQSHLSLVLGERLVGPLDTIIQISKIKLGKLYAASIMYDSLIRI************************SYVMYLDAETLQRYATIRSKEAISLIEKQTQALFGRPDIRVLEDGSIDTSKDEVISVTFLGLTMLVLEAVAFGSFMWDSESYVESKYPFI**
Disordered Region (DISEMBL)
********SDPVGRVDFWPNQEQKLESVHSPEAFEMIQSHLSLVLGERLVGPLDTIIQISKIKLGKLYAASIMYDSLIRIPPNDDGTVGESFMDGGEGKSYRLRSYVMYLDAETLQRYATIRSKEAISLIEKQTQALFGRPDIRVLEDGSIDTSKDEVISVTFLGLTMLVLEAVAFGSFMWDSESYVESKYPFIKS
Disordered Region (DISPRO)
****IRET*DPVGRVDFWPNQEQKLESVHSPEAFEMIQSHLSLVLGERLVGPLDTIIQISKIKLGKLYAASIMYDSLIRIPP*****************SYRLRSYVMYLDAETLQRYATIRSKEAISLIEKQTQALFGRPDIRVLEDGSIDTSKDEVISVTFLGLTMLVLEAVAFGSFMWDSESYVESKYPFIKS
Transmembrane Helix (TMHMM)
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Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
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Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MIPKIRETSDPVGRVDFWPNQEQKLESVHSPEAFEMIQSHLSLVLGERLVGPLDTIIQISKIKLGKLYAASIMYDSLIRIPPNDDGTVGESFMDGGEGKSYRLRSYVMYLDAETLQRYATIRSKEAISLIEKQTQALFGRPDIRVLEDGSIDTSKDEVISVTFLGLTMLVLEAVAFGSFMWDSESYVESKYPFIKS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	196
225427093	403	PREDICTED: uncharacterized protein LOC10	0.989	0.481	0.694	5e-83
147794013	299	hypothetical protein VITISV_039448 [Viti	0.989	0.648	0.694	6e-83
255555907	408	conserved hypothetical protein [Ricinus	0.974	0.468	0.682	6e-82
224074354	349	predicted protein [Populus trichocarpa]	0.994	0.558	0.677	5e-81
449436852	405	PREDICTED: uncharacterized protein LOC10	0.994	0.481	0.668	5e-81
356531461	408	PREDICTED: uncharacterized protein LOC10	0.994	0.477	0.634	1e-75
363806784	406	uncharacterized protein LOC100810147 [Gl	0.974	0.470	0.631	8e-74
297742031	423	unnamed protein product [Vitis vinifera]	0.872	0.404	0.680	8e-71
357484841	410	hypothetical protein MTR_5g028020 [Medic	0.989	0.473	0.623	1e-70
297846178	406	hypothetical protein ARALYDRAFT_473397 [	1.0	0.482	0.585	2e-67

>gi|225427093|ref|XP_002276652.1| PREDICTED: uncharacterized protein LOC100260823 [Vitis vinifera]

 Score =  312 bits (799), Expect = 5e-83,   Method: Compositional matrix adjust.
 Identities = 166/239 (69%), Positives = 178/239 (74%), Gaps = 45/239 (18%)

Query: 1   MIPKIRETSDPVGRVDFWPNQEQKLESVHSPEAFEMIQSHLSLVLGERLVGPLDTIIQIS 60
           MIPKI  TSDPVGRVDFWPNQEQKLES+HSPEAFEMIQSHLSLVLGERLVGPLDTI+QIS
Sbjct: 167 MIPKISATSDPVGRVDFWPNQEQKLESIHSPEAFEMIQSHLSLVLGERLVGPLDTIVQIS 226

Query: 61  KIKLGKLYAASIMY-------------------------------------------DSL 77
           KIKLGKLYAASIMY                                           DSL
Sbjct: 227 KIKLGKLYAASIMYGYFLKRVDERYQLERTMKTLPEGFNENRLSFEDPGPANRLWDPDSL 286

Query: 78  IRIPPNDDGTVGESFMDGGEGKSYRLRSYVMYLDAETLQRYATIRSKEAISLIEKQTQAL 137
           IRIP +D        +D  EG SYRLRSYVMYLDAETLQRYATIRSKEAISLIEKQTQAL
Sbjct: 287 IRIPADD--DDDGGMLDSVEGGSYRLRSYVMYLDAETLQRYATIRSKEAISLIEKQTQAL 344

Query: 138 FGRPDIRVLEDGSIDTSKDEVISVTFLGLTMLVLEAVAFGSFMWDSESYVESKYPFIKS 196
           FG+PD+RV EDGS+DTS DEV+S+TF GLTMLVLEAVAFGSF+WDSE+YVESKY F+KS
Sbjct: 345 FGKPDVRVSEDGSLDTSNDEVVSITFSGLTMLVLEAVAFGSFLWDSETYVESKYHFLKS 403

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147794013|emb|CAN68920.1| hypothetical protein VITISV_039448 [Vitis vinifera]

 Score =  312 bits (799), Expect = 6e-83,   Method: Compositional matrix adjust.
 Identities = 166/239 (69%), Positives = 178/239 (74%), Gaps = 45/239 (18%)

Query: 1   MIPKIRETSDPVGRVDFWPNQEQKLESVHSPEAFEMIQSHLSLVLGERLVGPLDTIIQIS 60
           MIPKI  TSDPVGRVDFWPNQEQKLES+HSPEAFEMIQSHLSLVLGERLVGPLDTI+QIS
Sbjct: 63  MIPKISATSDPVGRVDFWPNQEQKLESIHSPEAFEMIQSHLSLVLGERLVGPLDTIVQIS 122

Query: 61  KIKLGKLYAASIMY-------------------------------------------DSL 77
           KIKLGKLYAASIMY                                           DSL
Sbjct: 123 KIKLGKLYAASIMYGYFLKRVDERYQLERTMKTLPEGFNENRLSFEDPGPANRLWDPDSL 182

Query: 78  IRIPPNDDGTVGESFMDGGEGKSYRLRSYVMYLDAETLQRYATIRSKEAISLIEKQTQAL 137
           IRIP +D        +D  EG SYRLRSYVMYLDAETLQRYATIRSKEAISLIEKQTQAL
Sbjct: 183 IRIPADD--DDDGGMLDSVEGGSYRLRSYVMYLDAETLQRYATIRSKEAISLIEKQTQAL 240

Query: 138 FGRPDIRVLEDGSIDTSKDEVISVTFLGLTMLVLEAVAFGSFMWDSESYVESKYPFIKS 196
           FG+PD+RV EDGS+DTS DEV+S+TF GLTMLVLEAVAFGSF+WDSE+YVESKY F+KS
Sbjct: 241 FGKPDVRVSEDGSLDTSNDEVVSITFSGLTMLVLEAVAFGSFLWDSETYVESKYHFLKS 299

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255555907|ref|XP_002518989.1| conserved hypothetical protein [Ricinus communis] gi|223541976|gb|EEF43522.1| conserved hypothetical protein [Ricinus communis]

 Score =  308 bits (790), Expect = 6e-82,   Method: Compositional matrix adjust.
 Identities = 163/239 (68%), Positives = 176/239 (73%), Gaps = 48/239 (20%)

Query: 1   MIPKIRETSDPVGRVDFWPNQEQKLESVHSPEAFEMIQSHLSLVLGERLVGPLDTIIQIS 60
           MIPK+  TSDP GRVDFWPNQEQKLESVHSPEAFEMI SHL+LVLGER+VGPL+TI+QIS
Sbjct: 175 MIPKVSATSDPTGRVDFWPNQEQKLESVHSPEAFEMILSHLTLVLGERVVGPLETIVQIS 234

Query: 61  KIKLGKLYAASIMY-------------------------------------------DSL 77
           KIKLGKLYAASIMY                                           DSL
Sbjct: 235 KIKLGKLYAASIMYGYFLRRVDERFQLERTMNTLPKDYDENRARYDEPSPMNRLWDPDSL 294

Query: 78  IRIPPNDDGTVGESFMDGGEGKSYRLRSYVMYLDAETLQRYATIRSKEAISLIEKQTQAL 137
           IRI P++ G     FMD  EGKSYRLRSYVMYLD ETLQRYATIRSKEA+SLIEKQTQAL
Sbjct: 295 IRIQPDNGG-----FMDTVEGKSYRLRSYVMYLDVETLQRYATIRSKEAMSLIEKQTQAL 349

Query: 138 FGRPDIRVLEDGSIDTSKDEVISVTFLGLTMLVLEAVAFGSFMWDSESYVESKYPFIKS 196
           FGRPDIR+ EDGSIDT+ DEVIS+TF GLTMLVLEAVAFGSF+W+ ESYVESKY FI S
Sbjct: 350 FGRPDIRIAEDGSIDTANDEVISITFSGLTMLVLEAVAFGSFLWEGESYVESKYHFISS 408

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224074354|ref|XP_002304357.1| predicted protein [Populus trichocarpa] gi|222841789|gb|EEE79336.1| predicted protein [Populus trichocarpa]

 Score =  305 bits (782), Expect = 5e-81,   Method: Compositional matrix adjust.
 Identities = 162/239 (67%), Positives = 173/239 (72%), Gaps = 44/239 (18%)

Query: 1   MIPKIRETSDPVGRVDFWPNQEQKLESVHSPEAFEMIQSHLSLVLGERLVGPLDTIIQIS 60
           MIPKI  TSDP GRVDFWPNQEQKLESVHSPEAFEMIQSHLS+VLGERLVGPL+T +QIS
Sbjct: 112 MIPKISPTSDPTGRVDFWPNQEQKLESVHSPEAFEMIQSHLSIVLGERLVGPLETTVQIS 171

Query: 61  KIKLGKLYAASIMY-------------------------------------------DSL 77
           KIKLGKLYAAS+MY                                           DSL
Sbjct: 172 KIKLGKLYAASLMYGYFLRRVDQRYQLERAMNTLPKGFDEDRARFEDPSPANRLWDPDSL 231

Query: 78  IRIPPNDDGTVGESFMDGGEGKSYRLRSYVMYLDAETLQRYATIRSKEAISLIEKQTQAL 137
           IRI P D G     F D GE KSYRLRSYVMYLDAETLQRYATIRSKEAISLIEKQTQAL
Sbjct: 232 IRILP-DSGEPDGDFTDTGEEKSYRLRSYVMYLDAETLQRYATIRSKEAISLIEKQTQAL 290

Query: 138 FGRPDIRVLEDGSIDTSKDEVISVTFLGLTMLVLEAVAFGSFMWDSESYVESKYPFIKS 196
           FGRPDIR+  DGSI+T+ DEV+S+TF GLTMLVLEAV FGSF+WD+ESYVESKY F  S
Sbjct: 291 FGRPDIRIAGDGSIETANDEVVSITFSGLTMLVLEAVGFGSFLWDAESYVESKYHFFNS 349

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449436852|ref|XP_004136206.1| PREDICTED: uncharacterized protein LOC101213975 [Cucumis sativus] gi|449508054|ref|XP_004163203.1| PREDICTED: uncharacterized LOC101213975 [Cucumis sativus]

 Score =  305 bits (782), Expect = 5e-81,   Method: Compositional matrix adjust.
 Identities = 159/238 (66%), Positives = 180/238 (75%), Gaps = 43/238 (18%)

Query: 1   MIPKIRETSDPVGRVDFWPNQEQKLESVHSPEAFEMIQSHLSLVLGERLVGPLDTIIQIS 60
           MIPKI ETSDP GRVDFWPNQEQKLESVHSPEAFEMIQSHLSLVLG+R+VGP  +I+++S
Sbjct: 169 MIPKITETSDPTGRVDFWPNQEQKLESVHSPEAFEMIQSHLSLVLGDRVVGPFSSIVEMS 228

Query: 61  KIKLGKLYAASIMY----------------------------------------DSLIRI 80
           KIKLGKLYAASIMY                                        DSLIRI
Sbjct: 229 KIKLGKLYAASIMYGYFLKRVDQRFQLERTMKTLPEAFTKDFDEPIPANQLWDPDSLIRI 288

Query: 81  PPNDDGTVGES--FMDGGEGKSYRLRSYVMYLDAETLQRYATIRSKEAISLIEKQTQALF 138
            P+D+G  G+S   +D  +GKSYRLRSYVMYLD+ETLQRYAT+RSKEAISLIEKQTQ+LF
Sbjct: 289 APDDEG-FGDSRGLIDADDGKSYRLRSYVMYLDSETLQRYATLRSKEAISLIEKQTQSLF 347

Query: 139 GRPDIRVLEDGSIDTSKDEVISVTFLGLTMLVLEAVAFGSFMWDSESYVESKYPFIKS 196
           G+PDIR+  DGSIDT  DEVIS+TF GLTMLVLEAVAFGSF+WD+ESYVESKY FI++
Sbjct: 348 GKPDIRIAADGSIDTLNDEVISLTFSGLTMLVLEAVAFGSFLWDAESYVESKYNFIQT 405

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356531461|ref|XP_003534296.1| PREDICTED: uncharacterized protein LOC100802337 [Glycine max]

 Score =  287 bits (735), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 151/238 (63%), Positives = 170/238 (71%), Gaps = 43/238 (18%)

Query: 1   MIPKIRETSDPVGRVDFWPNQEQKLESVHSPEAFEMIQSHLSLVLGERLVGPLDTIIQIS 60
           MIPKI  TSDP GRVD WPNQE KLE+VHSPEA EMIQSHLSLVLG+RLVGPL T++QIS
Sbjct: 170 MIPKISATSDPTGRVDLWPNQELKLEAVHSPEALEMIQSHLSLVLGDRLVGPLQTVVQIS 229

Query: 61  KIKLGKLYAASIMY------------------------------------------DSLI 78
           KIKLGKLYAASIMY                                          DSLI
Sbjct: 230 KIKLGKLYAASIMYGYFLKRVDERFQLERSMGILPKDFGKAKSYDEPSPGIKLWDPDSLI 289

Query: 79  RIPPNDDGTVGES-FMDGGEGKSYRLRSYVMYLDAETLQRYATIRSKEAISLIEKQTQAL 137
            +   DD    +S +MD  E KS+RLR+YVM LDAETLQR AT+RSKEAISLIEKQTQAL
Sbjct: 290 TVQDYDDEGYNDSDYMDTDEDKSFRLRAYVMQLDAETLQRLATVRSKEAISLIEKQTQAL 349

Query: 138 FGRPDIRVLEDGSIDTSKDEVISVTFLGLTMLVLEAVAFGSFMWDSESYVESKYPFIK 195
           FGRPDIRV +DGSI+TS DE++S+TF GLTMLVLEA+AFGSF+WD E+YVESKYPF+ 
Sbjct: 350 FGRPDIRVSDDGSIETSNDELLSLTFSGLTMLVLEAIAFGSFLWDKENYVESKYPFLN 407

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|363806784|ref|NP_001242537.1| uncharacterized protein LOC100810147 [Glycine max] gi|255642509|gb|ACU21518.1| unknown [Glycine max]

 Score =  281 bits (720), Expect = 8e-74,   Method: Compositional matrix adjust.
 Identities = 149/236 (63%), Positives = 168/236 (71%), Gaps = 45/236 (19%)

Query: 1   MIPKIRETSDPVGRVDFWPNQEQKLESVHSPEAFEMIQSHLSLVLGERLVGPLDTIIQIS 60
           MIPKI  TSDP GRVD WPNQE KLE VHSPEAFEMIQSHLSLVLG+RLVGPL T++QIS
Sbjct: 171 MIPKISATSDPTGRVDLWPNQELKLEGVHSPEAFEMIQSHLSLVLGDRLVGPLQTVVQIS 230

Query: 61  KIKLGKLYAASIMY------------------------------------------DSLI 78
           KIKLGKLYAASIMY                                          DSLI
Sbjct: 231 KIKLGKLYAASIMYGYFLKRIDERFQLERSMGTLPKDFGKAKSFDEPSPGIKLWDPDSLI 290

Query: 79  RIPPNDDGTVGESFMDGGEGKSYRLRSYVMYLDAETLQRYATIRSKEAISLIEKQTQALF 138
            +   D+ +     MD  EG+S+RLR+YVM LDAETLQR AT+RSKEAISLIEKQTQAL 
Sbjct: 291 IVHDYDNDS---DHMDTDEGRSFRLRAYVMQLDAETLQRLATVRSKEAISLIEKQTQALV 347

Query: 139 GRPDIRVLEDGSIDTSKDEVISVTFLGLTMLVLEAVAFGSFMWDSESYVESKYPFI 194
           GRPDIRV EDGSI+TS DE++S+TF GLTMLVLEA+AFGSF+WD E+YVES+YPF+
Sbjct: 348 GRPDIRVSEDGSIETSNDELLSLTFSGLTMLVLEALAFGSFLWDKENYVESEYPFL 403

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297742031|emb|CBI33818.3| unnamed protein product [Vitis vinifera]

 Score =  271 bits (694), Expect = 8e-71,   Method: Compositional matrix adjust.
 Identities = 147/216 (68%), Positives = 156/216 (72%), Gaps = 45/216 (20%)

Query: 1   MIPKIRETSDPVGRVDFWPNQEQKLESVHSPEAFEMIQSHLSLVLGERLVGPLDTIIQIS 60
           MIPKI  TSDPVGRVDFWPNQEQKLES+HSPEAFEMIQSHLSLVLGERLVGPLDTI+QIS
Sbjct: 167 MIPKISATSDPVGRVDFWPNQEQKLESIHSPEAFEMIQSHLSLVLGERLVGPLDTIVQIS 226

Query: 61  KIKLGKLYAASIMY-------------------------------------------DSL 77
           KIKLGKLYAASIMY                                           DSL
Sbjct: 227 KIKLGKLYAASIMYGYFLKRVDERYQLERTMKTLPEGFNENRLSFEDPGPANRLWDPDSL 286

Query: 78  IRIPPNDDGTVGESFMDGGEGKSYRLRSYVMYLDAETLQRYATIRSKEAISLIEKQTQAL 137
           IRIP +D        +D  EG SYRLRSYVMYLDAETLQRYATIRSKEAISLIEKQTQAL
Sbjct: 287 IRIPADD--DDDGGMLDSVEGGSYRLRSYVMYLDAETLQRYATIRSKEAISLIEKQTQAL 344

Query: 138 FGRPDIRVLEDGSIDTSKDEVISVTFLGLTMLVLEA 173
           FG+PD+RV EDGS+DTS DEV+S+TF GLTMLVLEA
Sbjct: 345 FGKPDVRVSEDGSLDTSNDEVVSITFSGLTMLVLEA 380

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357484841|ref|XP_003612708.1| hypothetical protein MTR_5g028020 [Medicago truncatula] gi|355514043|gb|AES95666.1| hypothetical protein MTR_5g028020 [Medicago truncatula]

 Score =  271 bits (692), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 149/239 (62%), Positives = 165/239 (69%), Gaps = 45/239 (18%)

Query: 1   MIPKIRETSDPVGRVDFWPNQEQKLESVHSPEAFEMIQSHLSLVLGERLVGPLDTIIQIS 60
           MIPKI  TSDP  +VD WPNQE KLE+VHS EAFEMIQSHLSLVLGER VGPL TIIQIS
Sbjct: 170 MIPKISATSDPNEQVDSWPNQEFKLEAVHSSEAFEMIQSHLSLVLGERAVGPLQTIIQIS 229

Query: 61  KIKLGKLYAASIMY-------------------------------------------DSL 77
           KIKLGKLYAASIMY                                           DSL
Sbjct: 230 KIKLGKLYAASIMYGYFLKRVDERFQLERSVGTLPQDLGKENISFDEPSPPNKLWDSDSL 289

Query: 78  IRIPPNDDGTVGESFMD--GGEGKSYRLRSYVMYLDAETLQRYATIRSKEAISLIEKQTQ 135
           IRI P+D+G      M+   GEGKS  LR+YV  LD E LQR AT+RSKEAISLIEKQTQ
Sbjct: 290 IRIYPDDEGYYEMDDMNTGDGEGKSSGLRAYVTQLDTEALQRLATVRSKEAISLIEKQTQ 349

Query: 136 ALFGRPDIRVLEDGSIDTSKDEVISVTFLGLTMLVLEAVAFGSFMWDSESYVESKYPFI 194
           ALFGRPDIR+  DGSI+T+ DEV+S+TF GLTMLVLE+VAFGSF+WD E+YVESKYPF+
Sbjct: 350 ALFGRPDIRLSGDGSIETTNDEVLSLTFSGLTMLVLESVAFGSFLWDEENYVESKYPFL 408

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297846178|ref|XP_002890970.1| hypothetical protein ARALYDRAFT_473397 [Arabidopsis lyrata subsp. lyrata] gi|297336812|gb|EFH67229.1| hypothetical protein ARALYDRAFT_473397 [Arabidopsis lyrata subsp. lyrata]

 Score =  260 bits (665), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 141/241 (58%), Positives = 164/241 (68%), Gaps = 45/241 (18%)

Query: 1   MIPKIRETSDPVGRVDFWPNQEQKLESVHSPEAFEMIQSHLSLVLGERL-VGPLDTIIQI 59
           MIP+I+ TSDP GR+D WPNQE+KLE +HS +AFEMIQSHLS VLG+R  VGPL +I+QI
Sbjct: 166 MIPQIKPTSDPAGRIDLWPNQEEKLEVIHSADAFEMIQSHLSSVLGDRTAVGPLSSIVQI 225

Query: 60  SKIKLGKLYAASIMY-------------------------------------------DS 76
            KIKLGKLYAAS MY                                           DS
Sbjct: 226 GKIKLGKLYAASAMYGYFLRRVDQRYQLERTMNTLPKRPEKTRERFEEPSPPYPLWDPDS 285

Query: 77  LIRIPPND-DGTVGESFMDGGEGKSYRLRSYVMYLDAETLQRYATIRSKEAISLIEKQTQ 135
           LIRI P + D        +  E  SY LRSYV YLD++TLQRYATIRSKEA++LIEKQTQ
Sbjct: 286 LIRIQPEEYDPDEYAIQRNEDESSSYGLRSYVTYLDSDTLQRYATIRSKEAMTLIEKQTQ 345

Query: 136 ALFGRPDIRVLEDGSIDTSKDEVISVTFLGLTMLVLEAVAFGSFMWDSESYVESKYPFIK 195
           ALFGRPDIR+LEDG +DTS DEV+S++  GL MLVLEAVAFGSF+WDSESYVESKY F+K
Sbjct: 346 ALFGRPDIRILEDGKLDTSNDEVLSLSVSGLAMLVLEAVAFGSFLWDSESYVESKYHFLK 405

Query: 196 S 196
           +
Sbjct: 406 A 406

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	196
TAIR|locus:2031760	406	AT1G32160 "AT1G32160" [Arabido	0.622	0.300	0.699	1.6e-67
TAIR|locus:2088490	427	AT3G17800 "AT3G17800" [Arabido	0.510	0.234	0.61	9.9e-52
TAIR|locus:2198055	423	AT1G48450 "AT1G48450" [Arabido	0.586	0.271	0.55	1.6e-47
TAIR|locus:2079626	368	AT3G07310 "AT3G07310" [Arabido	0.908	0.483	0.361	1.6e-22
TAIR|locus:2152516	344	AT5G48590 "AT5G48590" [Arabido	0.846	0.482	0.349	6.3e-21

TAIR|locus:2031760 AT1G32160 "AT1G32160" [Arabidopsis thaliana (taxid:3702)]

 Score = 419 (152.6 bits), Expect = 1.6e-67, Sum P(2) = 1.6e-67
 Identities = 86/123 (69%), Positives = 100/123 (81%)

Query:    75 DSLIRIPPND-DGTVGESFMDGGEGKSYRLRSYVMYLDAETLQRYATIRSKEAISLIEKQ 133
             DSLIRI P + D        +  E  SY LRSYV YLD++TLQRYATIRSKEA++LIEKQ
Sbjct:   284 DSLIRIQPEEYDPDEYAIQRNEDESSSYGLRSYVTYLDSDTLQRYATIRSKEAMTLIEKQ 343

Query:   134 TQALFGRPDIRVLEDGSIDTSKDEVISVTFLGLTMLVLEAVAFGSFMWDSESYVESKYPF 193
             TQALFGRPDIR+LEDG +DTS DEV+S++  GL MLVLEAVAFGSF+WDSESYVESKY F
Sbjct:   344 TQALFGRPDIRILEDGKLDTSNDEVLSLSVSGLAMLVLEAVAFGSFLWDSESYVESKYHF 403

Query:   194 IKS 196
             +K+
Sbjct:   404 LKA 406

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=IDA

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0009965 "leaf morphogenesis" evidence=RCA

GO:0010155 "regulation of proton transport" evidence=RCA

GO:0030154 "cell differentiation" evidence=RCA

GO:0046777 "protein autophosphorylation" evidence=RCA

TAIR|locus:2088490 AT3G17800 "AT3G17800" [Arabidopsis thaliana (taxid:3702)]

 Score = 325 (119.5 bits), Expect = 9.9e-52, Sum P(2) = 9.9e-52
 Identities = 61/100 (61%), Positives = 81/100 (81%)

Query:    95 GGEGKSYRLRSYVMYLDAETLQRYATIRSKEAISLIEKQTQALFGRPDIRVLEDGSIDTS 154
             G E K  RLRSYVM  DAETLQRYATIRS+EA+ +IEK T+ALFG+P+I +  +G++D+S
Sbjct:   326 GSEIKPSRLRSYVMSFDAETLQRYATIRSREAVGIIEKHTEALFGKPEIVITPEGTVDSS 385

Query:   155 KDEVISVTFLGLTMLVLEAVAFGSFMWDSESYVESKYPFI 194
             KDE I ++F G+  LVLEAV FGSF+WD ES+V+++Y F+
Sbjct:   386 KDEQIKISFGGMKRLVLEAVTFGSFLWDVESHVDARYHFV 425

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0010224 "response to UV-B" evidence=IGI;IEP

TAIR|locus:2198055 AT1G48450 "AT1G48450" [Arabidopsis thaliana (taxid:3702)]

 Score = 316 (116.3 bits), Expect = 1.6e-47, Sum P(2) = 1.6e-47
 Identities = 66/120 (55%), Positives = 87/120 (72%)

Query:    80 IPPNDD-GT-VGESFMDGG---EGKSYRLRSYVMYLDAETLQRYATIRSKEAISLIEKQT 134
             +  N D G+ VG     GG   + K  RL++YVM  D ETLQRYATIRS+E++ +IEK T
Sbjct:   302 VSSNQDVGSFVGGINASGGFSSDMKQSRLKTYVMSFDGETLQRYATIRSRESVGIIEKHT 361

Query:   135 QALFGRPDIRVLEDGSIDTSKDEVISVTFLGLTMLVLEAVAFGSFMWDSESYVESKYPFI 194
             +ALFGRP+I +   G+ID+SKDE I ++F GL  LVLEAV FGSF+WD ES+V+S+Y F+
Sbjct:   362 EALFGRPEIVITPQGTIDSSKDEHIKISFKGLKRLVLEAVTFGSFLWDVESHVDSRYHFV 421

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2079626 AT3G07310 "AT3G07310" [Arabidopsis thaliana (taxid:3702)]

 Score = 261 (96.9 bits), Expect = 1.6e-22, P = 1.6e-22
 Identities = 77/213 (36%), Positives = 114/213 (53%)

Query:     1 MIPKIRETSDPVGRVDFWPNQEQKLESVHSPEAFEMIQSHLSLVLGERLVGPLD---TII 57
             ++PK+       GR++ WP+++ +LES++S +  E+I+ H+S V+G R+   +       
Sbjct:   152 LVPKLSRCIYN-GRLEIWPSKDWELESIYSCDTLEIIKEHVSAVIGLRVNSCVTDNWATT 210

Query:    58 QISKIKLGKLYAASIMYDSLIRIPP---------ND-DGT-------VGESFMDGGE--G 98
             QI K+ L K+YAASI+Y   ++            +D  G+        G SF  G     
Sbjct:   211 QIQKLHLRKVYAASILYGYFLKSASLRHQLECSLSDIHGSGYLKSPIFGCSFTTGTAQIS 270

Query:    99 KSYRLRSYVMYLDAETLQRYATIRSKEAISLIEKQTQALFGRPDIRVLEDGSIDTSKDEV 158
                +LR Y+   D ETLQR A  R++EA +LIEKQ+ ALFG  +             DE 
Sbjct:   271 NKQQLRHYISDFDPETLQRCAKPRTEEARNLIEKQSLALFGTEE------------SDET 318

Query:   159 ISVTFLGLTMLVLEAVAFGSFMWDSESYVESKY 191
             I  +F  L  LVLEAVAFG+F+WD+E YV+  Y
Sbjct:   319 IVTSFSSLKRLVLEAVAFGTFLWDTELYVDGAY 351

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0009740 "gibberellic acid mediated signaling pathway" evidence=RCA

GO:0010162 "seed dormancy process" evidence=RCA

TAIR|locus:2152516 AT5G48590 "AT5G48590" [Arabidopsis thaliana (taxid:3702)]

 Score = 246 (91.7 bits), Expect = 6.3e-21, P = 6.3e-21
 Identities = 64/183 (34%), Positives = 105/183 (57%)

Query:    13 GRVDFWPNQEQKLESVHSPEAFEMIQSHLSLVLGERLVGPLD---TIIQISKIKLGKLYA 69
             GR++  P+++ +LES+HS +  E+I+ H + V+  R+   L       +I K +L K+Y 
Sbjct:   159 GRLEISPSKDWELESIHSFDVLELIKEHSNAVISLRVNSSLTDDCATTEIDKNRLSKVYT 218

Query:    70 ASIMYDSLIRIPPNDDGTVGESFMDGGEGK-SYRLRSYVMYLDAETLQRYATIRSKEAIS 128
             AS++Y   ++          E  +    G  + +LR Y+   D + L+R A  RS EA S
Sbjct:   219 ASVLYGYFLKSASLRHQL--ECSLSQHHGSFTKQLRHYISEFDPKILRRCAKPRSHEAKS 276

Query:   129 LIEKQTQALFGRPDIRVLEDGSIDTSKDEVISVTFLGLTMLVLEAVAFGSFMWDSESYVE 188
             LIEKQ+ ALFG P+         ++SK+ +++ +F  L  L+LEAVAFG+F+WD+E YV+
Sbjct:   277 LIEKQSLALFG-PE---------ESSKESIVT-SFSSLKRLLLEAVAFGTFLWDTEEYVD 325

Query:   189 SKY 191
               +
Sbjct:   326 GAF 328


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.318   0.136   0.382    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      196       196   0.00080  111 3  11 22  0.48    32
                                                     31  0.44    35


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  5
  No. of states in DFA:  561 (60 KB)
  Total size of DFA:  143 KB (2089 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  17.67u 0.10s 17.77t   Elapsed:  00:00:00
  Total cpu time:  17.68u 0.10s 17.78t   Elapsed:  00:00:00
  Start:  Sat May 11 05:45:27 2013   End:  Sat May 11 05:45:27 2013

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0000023 "maltose metabolic process" evidence=RCA

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0019252 "starch biosynthetic process" evidence=RCA

GO:0031347 "regulation of defense response" evidence=RCA

GO:0043085 "positive regulation of catalytic activity" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00015667001 SubName- Full=Chromosome chr2 scaffold_11, whole genome shotgun sequence; (403 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	196
pfam05542	85	pfam05542, DUF760, Protein of unknown function (DU	3e-12

>gnl|CDD|203271 pfam05542, DUF760, Protein of unknown function (DUF760)

 Score = 59.5 bits (145), Expect = 3e-12
 Identities = 17/56 (30%), Positives = 28/56 (50%)

Query: 19 PNQEQKLESVHSPEAFEMIQSHLSLVLGERLVGPLDTIIQISKIKLGKLYAASIMY 74
          P    +L    SPE  E ++ ++S +LG       +  IQ S+  L +L A+S+M 
Sbjct: 12 PETLARLADSASPEVLEAMRRNVSGLLGSLPSDHFEVTIQTSRENLAQLLASSMMT 67

This family contains several uncharacterized plant proteins. Length = 85

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	196
PF05542	86	DUF760: Protein of unknown function (DUF760); Inte	99.13
PF05542	86	DUF760: Protein of unknown function (DUF760); Inte	97.52

>PF05542 DUF760: Protein of unknown function (DUF760); InterPro: IPR008479 This entry contains uncharacterised proteins

Probab=99.13  E-value=1.8e-11  Score=91.29  Aligned_cols=55  Identities=33%  Similarity=0.422  Sum_probs=49.6

Q ss_pred             ccccccccCCHHHHHHHHHHHHHHhccc-ccCCchhhhhhhccccccchhhhHhhH
Q 036217           21 QEQKLESVHSPEAFEMIQSHLSLVLGER-LVGPLDTIIQISKIKLGKLYAASIMYD   75 (196)
Q Consensus        21 ~~~kLEsiHS~EalEMI~eHL~~ilG~r-~~~~~~t~~qiskl~~gqvYAASIMYe   75 (196)
                      .-..++.+|||||+|+|++|+..+||.. ...+.++++++++.++||+||+++||.
T Consensus        14 ~~~~l~~~~s~ev~e~m~~~v~~llG~l~p~~~~~~~i~~s~~~La~L~~~~mm~G   69 (86)
T PF05542_consen   14 RIQQLSEPASPEVLEAMKQHVSGLLGNLSPSDQFNVTIQTSRENLAQLLAWSMMTG   69 (86)
T ss_pred             HHHHhhccCCHHHHHHHHHHHHHHHcCCCCcccCcceeEECHHHHHHHHHHHHHHh
Confidence            3345889999999999999999999999 556779999999999999999999993

>PF05542 DUF760: Protein of unknown function (DUF760); InterPro: IPR008479 This entry contains uncharacterised proteins

Probab=97.52  E-value=0.00024  Score=53.09  Aligned_cols=76  Identities=20%  Similarity=0.295  Sum_probs=67.6

Q ss_pred             hhhhhhhccCHHHHHHHHhhhhHHHHHHHHHhhhhhcCCCceeecCCCCcccCCCceEEEechhhHHHHHHHHhhccccc
Q 036217          102 RLRSYVMYLDAETLQRYATIRSKEAISLIEKQTQALFGRPDIRVLEDGSIDTSKDEVISVTFLGLTMLVLEAVAFGSFMW  181 (196)
Q Consensus       102 ~Lr~YVm~FD~eTLqr~A~iRSkEav~lIEkht~ALFG~p~i~i~~~Gsv~~~~de~i~isfs~LkrLVLEAVaFGSFLW  181 (196)
                      .|=.||.+.+||++++.++.-|.|++..|++|...+-|.-.        .....+-+|.++=..|-+|..=++.+|=|||
T Consensus         2 ~L~~yi~~l~pe~~~~l~~~~s~ev~e~m~~~v~~llG~l~--------p~~~~~~~i~~s~~~La~L~~~~mm~GYfLr   73 (86)
T PF05542_consen    2 DLLQYIQSLKPERIQQLSEPASPEVLEAMKQHVSGLLGNLS--------PSDQFNVTIQTSRENLAQLLAWSMMTGYFLR   73 (86)
T ss_pred             hHHHHHHHCCHHHHHHhhccCCHHHHHHHHHHHHHHHcCCC--------CcccCcceeEECHHHHHHHHHHHHHHhHHHH
Confidence            57789999999999999999999999999999999999552        1235667899999999999999999999999


Q ss_pred             cccc
Q 036217          182 DSES  185 (196)
Q Consensus       182 DvEs  185 (196)
                      .+|-
T Consensus        74 ~~E~   77 (86)
T PF05542_consen   74 NAEQ   77 (86)
T ss_pred             HHHH
Confidence            9873

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00