Citrus Sinensis ID: 036232

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------26
MLRRRERETSRRPLLFQRKKLKKGTTTRFNWVGGNTKDKSEIENSKLSSEVLREAVSTICGDAKEKNRNFVETIELQIGLKNYDPQKDKRFSGSVKLPHIPRPMMKVCMLGDAQHVEQAEKIGMDYMDVEALKKLNKNKKLVKKLAKKYHAFLASEAVIKQIPRLLGPGLNKAGKFPTLVTHQESLEAKVNETKAVVKFQLKKVLCMGVAVGNCSMEEKQVFQNVQLSVNFLVSLLKKSWQNVRCLHLKSTMGRPQRIY
cccccHHHHccccHHHHHHHHccccccHHHHcccccccHHHHHHccccHHHHHHHHHHHHcHHcccccccccEEEEEEEEccccccccccEEEEEEcccccccccEEEEEccHHHHHHHHHccccEEcHHHHHHHHHcHHHHHHHHHHccEEEEcHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHcEEEEEEccccEEEEEEEcccccHHHHHHHHHHHHHHHHHccccccccccEEEEEcccccccccc
ccHHHHHHccccHHHHHHHHHcccccEEEEEEEccccccEEEEcccccHHHHHHHHHHHHHHHcccccccEEEEEEEEEccccccccHHccEEEEEccccccccccEEEEEccHHHHHHHHcccEEEEccHHHHHHccHHHHHHHHHHccEEEEEHHHHHHHHHHHHHHHHHHccccEEEccccccHHHHHHHccEEEEEcccccEEEEEEEEccccHHHHHHHHHHHHHHHHHHcccHHHHEEEEEEEEcccccEEEc
mlrrreretsrrpllfqrkklkkgtttrfnwvggntkdkseiensKLSSEVLREAVSTICGDAKEKNRNFVETIELQIglknydpqkdkrfsgsvklphiprpmmkvcmlgDAQHVEQAEKIGMDYMDVEALKKLNKNKKLVKKLAKKYHAFLASEAVIKQIPrllgpglnkagkfptlVTHQESLEAKVNETKAVVKFQLKKVLCMGVAVGNCSMEEKQVFQNVQLSVNFLVSLLKKSWQNVRCLHlkstmgrpqriy
mlrrreretsrrpllfqrkklkkgtttrfnwvggntkdkseiensklsseVLREAVSTicgdakeknrnFVETIElqiglknydpqkdKRFSGSVKLPHIPRPMMKVCMLGDAQHVEQAEKIGMDYMDVEALKKLNKNKKLVKKLAKKYHAFLASEAVIKQIPRLLGPGLNKAGKFPTLVTHQESLEAKVNETKAVVKFQLKKVLCMGVAVGNCSMEEKQVFQNVQLSVNFLVSLLKKSwqnvrclhlkstmgrpqriy
MLrrreretsrrPLLFQRKKLKKGTTTRFNWVGGNTKDKSEIENSKLSSEVLREAVSTICGDAKEKNRNFVETIELQIGLKNYDPQKDKRFSGSVKLPHIPRPMMKVCMLGDAQHVEQAEKIGMDYMDVEalkklnknkklvkklakkYHAFLASEAVIKQIPRLLGPGLNKAGKFPTLVTHQESLEAKVNETKAVVKFQLKKVLCMGVAVGNCSMEEKQVFQNVQLSVNFLVSLLKKSWQNVRCLHLKSTMGRPQRIY
**************************TRFNWV**********************AVSTICGDAKEKNRNFVETIELQIGLKNY************KLPHIPRPMMKVCMLGDAQHVEQAEKIGMDYMDVEALKKLNKNKKLVKKLAKKYHAFLASEAVIKQIPRLLGPGLNKAGKFPTLVTHQESLEAKVNETKAVVKFQLKKVLCMGVAVGNCSMEEKQVFQNVQLSVNFLVSLLKKSWQNVRCLHLK**********
**********************************************LSSEVLREAVSTICGDAKEKNRNFVETIELQIGLKNYDPQKDKRFSGSVKLPHIPRPMMKVCMLGDAQHVEQAEKIGMDYMDVEALKKLNKNKKLVKKLAKKYHAFLASEAVIKQIPRLLGPGLNKAGKFPTLVTHQESLEAKVNETKAVVKFQLKKVLCMGVAVGNCSMEEKQVFQNVQLSVNFLVSLLKKSWQNVRCLHLKSTMGRPQRIY
***********RPLLFQRKKLKKGTTTRFNWVGGNTKDKSEIENSKLSSEVLREAVSTICGDAKEKNRNFVETIELQIGLKNYDPQKDKRFSGSVKLPHIPRPMMKVCMLGDAQHVEQAEKIGMDYMDVEALKKLNKNKKLVKKLAKKYHAFLASEAVIKQIPRLLGPGLNKAGKFPTLVTHQESLEAKVNETKAVVKFQLKKVLCMGVAVGNCSMEEKQVFQNVQLSVNFLVSLLKKSWQNVRCLHLKSTMGRPQRIY
*********SRRPLLFQRKKLKKGTTTRFNWVGGNTKDKSEIENSKLSSEVLREAVSTICGDAKEKNRNFVETIELQIGLKNYDPQKDKRFSGSVKLPHIPRPMMKVCMLGDAQHVEQAEKIGMDYMDVEALKKLNKNKKLVKKLAKKYHAFLASEAVIKQIPRLLGPGLNKAGKFPTLVTHQESLEAKVNETKAVVKFQLKKVLCMGVAVGNCSMEEKQVFQNVQLSVNFLVSLLKKSWQNVRCLHLKSTMGRPQRIY
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MLRRRERETSRRPLLFQRKKLKKGTTTRFNWVGGNTKDKSEIENSKLSSEVLREAVSTICGDAKEKNRNFVETIELQIGLKNYDPQKDKRFSGSVKLPHIPRPMMKVCMLGDAQHVEQAEKIGMDYMDVEALKKLNKNKKLVKKLAKKYHAFLASEAVIKQIPRLLGPGLNKAGKFPTLVTHQESLEAKVNETKAVVKFQLKKVLCMGVAVGNCSMEEKQVFQNVQLSVNFLVSLLKKSWQNVRCLHLKSTMGRPQRIY
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query259 2.2.26 [Sep-21-2011]
Q8VZB9216 60S ribosomal protein L10 yes no 0.830 0.995 0.860 4e-97
P59230216 60S ribosomal protein L10 yes no 0.830 0.995 0.865 6e-97
P59231217 60S ribosomal protein L10 no no 0.830 0.990 0.847 2e-93
Q9VTP4217 60S ribosomal protein L10 yes no 0.830 0.990 0.674 8e-73
Q963B6217 60S ribosomal protein L10 N/A no 0.833 0.995 0.671 6e-72
Q7ZYS8217 60S ribosomal protein L10 N/A no 0.833 0.995 0.643 3e-70
Q9N4I4216 60S ribosomal protein L10 yes no 0.830 0.995 0.632 5e-70
Q6PC69216 60S ribosomal protein L10 yes no 0.830 0.995 0.646 3e-69
P62907217 60S ribosomal protein L10 yes no 0.833 0.995 0.638 3e-69
P62906217 60S ribosomal protein L10 yes no 0.833 0.995 0.638 3e-69
>sp|Q8VZB9|R10A1_ARATH 60S ribosomal protein L10a-1 OS=Arabidopsis thaliana GN=RPL10AA PE=2 SV=1 Back     alignment and function desciption
 Score =  354 bits (908), Expect = 4e-97,   Method: Compositional matrix adjust.
 Identities = 185/215 (86%), Positives = 204/215 (94%)

Query: 45  SKLSSEVLREAVSTICGDAKEKNRNFVETIELQIGLKNYDPQKDKRFSGSVKLPHIPRPM 104
           SKL SE +REA++TI G ++ K RNFVETIELQIGLKNYDPQKDKRFSGSVKLPHIPRP 
Sbjct: 2   SKLQSEAVREAITTITGKSEAKKRNFVETIELQIGLKNYDPQKDKRFSGSVKLPHIPRPK 61

Query: 105 MKVCMLGDAQHVEQAEKIGMDYMDVEALKKLNKNKKLVKKLAKKYHAFLASEAVIKQIPR 164
           MK+CMLGDAQHVE+AEK+G++ MDVE+LKKLNKNKKLVKKLAKKYHAFLASE+VIKQIPR
Sbjct: 62  MKICMLGDAQHVEEAEKMGLENMDVESLKKLNKNKKLVKKLAKKYHAFLASESVIKQIPR 121

Query: 165 LLGPGLNKAGKFPTLVTHQESLEAKVNETKAVVKFQLKKVLCMGVAVGNCSMEEKQVFQN 224
           LLGPGLNKAGKFPTLV+HQESLE+KVNETKA VKFQLKKVLCMGVAVGN SMEEKQ+FQN
Sbjct: 122 LLGPGLNKAGKFPTLVSHQESLESKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQIFQN 181

Query: 225 VQLSVNFLVSLLKKSWQNVRCLHLKSTMGRPQRIY 259
           VQ+SVNFLVSLLKK+WQNVRCL+LKSTMG PQRI+
Sbjct: 182 VQMSVNFLVSLLKKNWQNVRCLYLKSTMGPPQRIF 216

Arabidopsis thaliana (taxid: 3702)
>sp|P59230|R10A2_ARATH 60S ribosomal protein L10a-2 OS=Arabidopsis thaliana GN=RPL10AB PE=2 SV=1 Back     alignment and function description
>sp|P59231|R10A3_ARATH 60S ribosomal protein L10a-3 OS=Arabidopsis thaliana GN=RPL10AC PE=2 SV=1 Back     alignment and function description
>sp|Q9VTP4|R10AB_DROME 60S ribosomal protein L10a-2 OS=Drosophila melanogaster GN=RpL10Ab PE=2 SV=2 Back     alignment and function description
>sp|Q963B6|RL10A_SPOFR 60S ribosomal protein L10a OS=Spodoptera frugiperda GN=RpL10A PE=2 SV=1 Back     alignment and function description
>sp|Q7ZYS8|RL10A_XENLA 60S ribosomal protein L10a OS=Xenopus laevis GN=rpl10a PE=2 SV=1 Back     alignment and function description
>sp|Q9N4I4|RL10A_CAEEL 60S ribosomal protein L10a OS=Caenorhabditis elegans GN=rpl-10a PE=2 SV=1 Back     alignment and function description
>sp|Q6PC69|RL10A_DANRE 60S ribosomal protein L10a OS=Danio rerio GN=rpl10a PE=2 SV=1 Back     alignment and function description
>sp|P62907|RL10A_RAT 60S ribosomal protein L10a OS=Rattus norvegicus GN=Rpl10a PE=1 SV=2 Back     alignment and function description
>sp|P62906|RL10A_HUMAN 60S ribosomal protein L10a OS=Homo sapiens GN=RPL10A PE=1 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query259
225440890216 PREDICTED: 60S ribosomal protein L10a-1- 0.830 0.995 0.893 1e-99
192910762216 ribosomal protein L10a [Elaeis guineensi 0.830 0.995 0.883 5e-99
195605856216 60S ribosomal protein L10a-1 [Zea mays] 0.830 0.995 0.846 1e-98
356550103216 PREDICTED: 60S ribosomal protein L10a-1 0.830 0.995 0.888 1e-97
226501466 382 uncharacterized protein LOC100272335 [Ze 0.876 0.594 0.805 1e-97
195623212216 60S ribosomal protein L10a-1 [Zea mays] 0.830 0.995 0.837 1e-97
359479518216 PREDICTED: 60S ribosomal protein L10a-1- 0.830 0.995 0.879 1e-97
351721216216 uncharacterized protein LOC100305550 [Gl 0.830 0.995 0.888 2e-97
313586523216 60S ribosomal protein L10aB [Hevea brasi 0.830 0.995 0.874 2e-97
116781901216 unknown [Picea sitchensis] gi|148908521| 0.830 0.995 0.865 2e-97
>gi|225440890|ref|XP_002282641.1| PREDICTED: 60S ribosomal protein L10a-1-like [Vitis vinifera] Back     alignment and taxonomy information
 Score =  368 bits (945), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 192/215 (89%), Positives = 206/215 (95%)

Query: 45  SKLSSEVLREAVSTICGDAKEKNRNFVETIELQIGLKNYDPQKDKRFSGSVKLPHIPRPM 104
           SKL SE LREA++ I GDAKEK RNF+ETIELQIGLKNYDPQKDKRFSGSVKLPHIPRP 
Sbjct: 2   SKLQSEALREAITQIVGDAKEKKRNFIETIELQIGLKNYDPQKDKRFSGSVKLPHIPRPK 61

Query: 105 MKVCMLGDAQHVEQAEKIGMDYMDVEALKKLNKNKKLVKKLAKKYHAFLASEAVIKQIPR 164
           MK+CMLGDAQHVE+AEKIG++YMDVE LKKLNKNKKLVKKLAKKYHAFLASEAVIKQIPR
Sbjct: 62  MKICMLGDAQHVEEAEKIGLEYMDVEGLKKLNKNKKLVKKLAKKYHAFLASEAVIKQIPR 121

Query: 165 LLGPGLNKAGKFPTLVTHQESLEAKVNETKAVVKFQLKKVLCMGVAVGNCSMEEKQVFQN 224
           LLGPGLNKAGKFPTLVTHQESLE+KVNETKA+VKFQLKKVLCMGVAVGNCSMEEKQ+FQN
Sbjct: 122 LLGPGLNKAGKFPTLVTHQESLESKVNETKAMVKFQLKKVLCMGVAVGNCSMEEKQIFQN 181

Query: 225 VQLSVNFLVSLLKKSWQNVRCLHLKSTMGRPQRIY 259
           VQLSVNFLVSLLKK+WQNVRCL+LKSTMG+  RI+
Sbjct: 182 VQLSVNFLVSLLKKNWQNVRCLYLKSTMGKSNRIF 216

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|192910762|gb|ACF06489.1| ribosomal protein L10a [Elaeis guineensis] Back     alignment and taxonomy information
>gi|195605856|gb|ACG24758.1| 60S ribosomal protein L10a-1 [Zea mays] gi|195605912|gb|ACG24786.1| 60S ribosomal protein L10a-1 [Zea mays] gi|195618532|gb|ACG31096.1| 60S ribosomal protein L10a-1 [Zea mays] gi|195623048|gb|ACG33354.1| 60S ribosomal protein L10a-1 [Zea mays] gi|195657523|gb|ACG48229.1| 60S ribosomal protein L10a-1 [Zea mays] gi|414870104|tpg|DAA48661.1| TPA: ribosomal protein isoform 1 [Zea mays] gi|414870105|tpg|DAA48662.1| TPA: ribosomal protein isoform 2 [Zea mays] Back     alignment and taxonomy information
>gi|356550103|ref|XP_003543429.1| PREDICTED: 60S ribosomal protein L10a-1 [Glycine max] gi|255632980|gb|ACU16844.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|226501466|ref|NP_001140290.1| uncharacterized protein LOC100272335 [Zea mays] gi|194698874|gb|ACF83521.1| unknown [Zea mays] Back     alignment and taxonomy information
>gi|195623212|gb|ACG33436.1| 60S ribosomal protein L10a-1 [Zea mays] Back     alignment and taxonomy information
>gi|359479518|ref|XP_002274218.2| PREDICTED: 60S ribosomal protein L10a-1-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|351721216|ref|NP_001236946.1| uncharacterized protein LOC100305550 [Glycine max] gi|255625879|gb|ACU13284.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|313586523|gb|ADR71272.1| 60S ribosomal protein L10aB [Hevea brasiliensis] Back     alignment and taxonomy information
>gi|116781901|gb|ABK22290.1| unknown [Picea sitchensis] gi|148908521|gb|ABR17372.1| unknown [Picea sitchensis] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query259
TAIR|locus:2042087216 PGY1 "PIGGYBACK1" [Arabidopsis 0.830 0.995 0.786 3.7e-87
TAIR|locus:2201811216 AT1G08360 [Arabidopsis thalian 0.830 0.995 0.781 7.7e-87
TAIR|locus:2176337217 AT5G22440 [Arabidopsis thalian 0.830 0.990 0.763 2.1e-84
FB|FBgn0036213217 RpL10Ab "Ribosomal protein L10 0.830 0.990 0.595 1.7e-66
GENEDB_PFALCIPARUM|PF14_0391217 PF14_0391 "ribosomal protein L 0.830 0.990 0.553 2e-63
UNIPROTKB|Q8IL58217 PF14_0391 "60S ribosomal prote 0.830 0.990 0.553 2e-63
ZFIN|ZDB-GENE-030131-2025216 rpl10a "ribosomal protein L10a 0.830 0.995 0.562 2e-63
WB|WBGene00004412216 rpl-1 [Caenorhabditis elegans 0.830 0.995 0.567 3.3e-63
UNIPROTKB|Q5E9E6217 RPL10A "60S ribosomal protein 0.833 0.995 0.555 4.2e-63
UNIPROTKB|E2R9V0217 RPL10A "Ribosomal protein" [Ca 0.833 0.995 0.555 4.2e-63
TAIR|locus:2042087 PGY1 "PIGGYBACK1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 871 (311.7 bits), Expect = 3.7e-87, P = 3.7e-87
 Identities = 169/215 (78%), Positives = 186/215 (86%)

Query:    45 SKLSSEVLREAVSTICGDAKEKNRNFVETIELQIGLKNYDPQKDKRFSGSVKLPHIPRPM 104
             SKL SE +REA++TI G ++EK RNFVET+ELQIGLKNYDPQKDKRFSGSVKLPHIPRP 
Sbjct:     2 SKLQSEAVREAITTIKGKSEEKKRNFVETVELQIGLKNYDPQKDKRFSGSVKLPHIPRPK 61

Query:   105 MKVCMLGDAQHVEQAEKIGMDYMDVEXXXXXXXXXXXXXXXXXXYHAFLASEAVIKQIPR 164
             MK+CMLGDAQHVE+AEK+G+  MDVE                  YHAFLASE+VIKQIPR
Sbjct:    62 MKICMLGDAQHVEEAEKMGLSNMDVEALKKLNKNKKLVKKLAKSYHAFLASESVIKQIPR 121

Query:   165 LLGPGLNKAGKFPTLVTHQESLEAKVNETKAVVKFQLKKVLCMGVAVGNCSMEEKQVFQN 224
             LLGPGLNKAGKFPTLV+HQESLEAKVNETKA VKFQLKKVLCMGVAVGN SMEEKQ+FQN
Sbjct:   122 LLGPGLNKAGKFPTLVSHQESLEAKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQLFQN 181

Query:   225 VQLSVNFLVSLLKKSWQNVRCLHLKSTMGRPQRIY 259
             VQ+SVNFLVSLLKK+WQNVRCL+LKSTMG PQRI+
Sbjct:   182 VQMSVNFLVSLLKKNWQNVRCLYLKSTMGPPQRIF 216
GO:0003723 "RNA binding" evidence=IEA
GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS
GO:0005622 "intracellular" evidence=IEA
GO:0005840 "ribosome" evidence=IEA
GO:0006412 "translation" evidence=IEA;ISS
GO:0009507 "chloroplast" evidence=ISM
GO:0015934 "large ribosomal subunit" evidence=IEA;ISS
GO:0022626 "cytosolic ribosome" evidence=IDA
GO:0022625 "cytosolic large ribosomal subunit" evidence=IDA
GO:0009955 "adaxial/abaxial pattern specification" evidence=IGI
GO:0048569 "post-embryonic organ development" evidence=IGI
GO:0005829 "cytosol" evidence=IDA
TAIR|locus:2201811 AT1G08360 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2176337 AT5G22440 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
FB|FBgn0036213 RpL10Ab "Ribosomal protein L10Ab" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
GENEDB_PFALCIPARUM|PF14_0391 PF14_0391 "ribosomal protein L1, putative" [Plasmodium falciparum (taxid:5833)] Back     alignment and assigned GO terms
UNIPROTKB|Q8IL58 PF14_0391 "60S ribosomal protein L1, putative" [Plasmodium falciparum 3D7 (taxid:36329)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-030131-2025 rpl10a "ribosomal protein L10a" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
WB|WBGene00004412 rpl-1 [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms
UNIPROTKB|Q5E9E6 RPL10A "60S ribosomal protein L10a" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|E2R9V0 RPL10A "Ribosomal protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
P53028RL10A_TRYBRNo assigned EC number0.57200.82230.9953N/Ano
P53026RL10A_MOUSENo assigned EC number0.63420.83390.9953yesno
O14363RL1A_SCHPONo assigned EC number0.63250.83010.9953yesno
P0CX43RL1A_YEASTNo assigned EC number0.59720.83010.9907yesno
Q6FRF5RL10A_CANGANo assigned EC number0.59250.83010.9907yesno
Q755D9RL10A_ASHGONo assigned EC number0.59720.83010.9907yesno
P0CX44RL1B_YEASTNo assigned EC number0.59720.83010.9907yesno
Q86L05RL10A_DICDINo assigned EC number0.56010.83010.9907yesno
Q90YV8RL10A_ICTPUNo assigned EC number0.63720.83010.9953N/Ano
Q7ZYS8RL10A_XENLANo assigned EC number0.64350.83390.9953N/Ano
Q6PC69RL10A_DANRENo assigned EC number0.64650.83010.9953yesno
Q9UVJ4RL10A_CANALNo assigned EC number0.61110.83010.9907N/Ano
P62907RL10A_RATNo assigned EC number0.63880.83390.9953yesno
P62906RL10A_HUMANNo assigned EC number0.63880.83390.9953yesno
Q8VZB9R10A1_ARATHNo assigned EC number0.86040.83010.9953yesno
Q9SW75RL10A_CHLRENo assigned EC number0.67440.81850.9953N/Ano
Q7RZS0RL10A_NEUCRNo assigned EC number0.61570.83010.9907N/Ano
Q963B6RL10A_SPOFRNo assigned EC number0.67120.83390.9953N/Ano
Q5E9E6RL10A_BOVINNo assigned EC number0.63880.83390.9953yesno
Q4R5P3RL10A_MACFANo assigned EC number0.62960.83390.9953N/Ano
Q9VTP4R10AB_DROMENo assigned EC number0.67440.83010.9907yesno
Q9N4I4RL10A_CAEELNo assigned EC number0.63250.83010.9953yesno
P59231R10A3_ARATHNo assigned EC number0.84720.83010.9907nono
P59230R10A2_ARATHNo assigned EC number0.86510.83010.9953yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
Sb07g024200.1
annotation not avaliable (217 aa)
(Sorghum bicolor)
Predicted Functional Partners:
Sb06g021660.1
annotation not avaliable (153 aa)
   •••• 0.885
Sb07g002560.1
hypothetical protein (319 aa)
•  •••• 0.883
Sb03g009210.1
annotation not avaliable (202 aa)
   •••• 0.875
Sb09g028230.1
hypothetical protein (319 aa)
•  •••• 0.855
Sb03g006610.1
hypothetical protein (158 aa)
   •••• 0.844
Sb07g001570.1
hypothetical protein (110 aa)
•  •••• 0.819
Sb10g006620.1
hypothetical protein (143 aa)
   •••• 0.798
Sb02g004510.1
annotation not avaliable (405 aa)
   •••• 0.722
Sb01g005210.1
hypothetical protein (404 aa)
   •••• 0.718
Sb09g001930.1
hypothetical protein (206 aa)
   •••  0.711

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query259
PTZ00029216 PTZ00029, PTZ00029, 60S ribosomal protein L10a; Pr 1e-120
PTZ00225214 PTZ00225, PTZ00225, 60S ribosomal protein L10a; Pr 3e-78
cd00403208 cd00403, Ribosomal_L1, Ribosomal protein L1 7e-67
pfam00687200 pfam00687, Ribosomal_L1, Ribosomal protein L1p/L10 2e-62
COG0081228 COG0081, RplA, Ribosomal protein L1 [Translation, 2e-42
PRK04203215 PRK04203, rpl1P, 50S ribosomal protein L1P; Review 5e-35
PRK05424230 PRK05424, rplA, 50S ribosomal protein L1; Validate 1e-04
TIGR01169227 TIGR01169, rplA_bact, ribosomal protein L1, bacter 4e-04
>gnl|CDD|185405 PTZ00029, PTZ00029, 60S ribosomal protein L10a; Provisional Back     alignment and domain information 
 Score =  342 bits (878), Expect = e-120
 Identities = 151/215 (70%), Positives = 189/215 (87%)

Query: 45  SKLSSEVLREAVSTICGDAKEKNRNFVETIELQIGLKNYDPQKDKRFSGSVKLPHIPRPM 104
           SKLSSE LR+A++ I   ++EK R FVET+ELQIGLK+YD QKDKRFSGSVKLP++P+P 
Sbjct: 2   SKLSSEALRKAIAEILEGSEEKKRKFVETVELQIGLKDYDTQKDKRFSGSVKLPNVPKPN 61

Query: 105 MKVCMLGDAQHVEQAEKIGMDYMDVEALKKLNKNKKLVKKLAKKYHAFLASEAVIKQIPR 164
           +KVC+LGDA H ++A+K+G+D+MD+E LKK NKNKKLVKKLAKKY AFLAS++++ QIPR
Sbjct: 62  LKVCVLGDAVHCDEAKKLGLDFMDIEGLKKFNKNKKLVKKLAKKYDAFLASQSLLPQIPR 121

Query: 165 LLGPGLNKAGKFPTLVTHQESLEAKVNETKAVVKFQLKKVLCMGVAVGNCSMEEKQVFQN 224
           LLGPGLNKAGKFPTL+TH + +E K+NE K+ VKFQLKKVLC+GVAVGN  M E+Q+ QN
Sbjct: 122 LLGPGLNKAGKFPTLITHNDDIEDKINELKSSVKFQLKKVLCLGVAVGNVEMTEEQLRQN 181

Query: 225 VQLSVNFLVSLLKKSWQNVRCLHLKSTMGRPQRIY 259
           + LS+NFLVSLLKK+WQN++ LH+KSTMG+PQRIY
Sbjct: 182 IVLSINFLVSLLKKNWQNIKTLHIKSTMGKPQRIY 216

Length = 216
>gnl|CDD|140252 PTZ00225, PTZ00225, 60S ribosomal protein L10a; Provisional Back     alignment and domain information
>gnl|CDD|238235 cd00403, Ribosomal_L1, Ribosomal protein L1 Back     alignment and domain information
>gnl|CDD|216061 pfam00687, Ribosomal_L1, Ribosomal protein L1p/L10e family Back     alignment and domain information
>gnl|CDD|223159 COG0081, RplA, Ribosomal protein L1 [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|235254 PRK04203, rpl1P, 50S ribosomal protein L1P; Reviewed Back     alignment and domain information
>gnl|CDD|180071 PRK05424, rplA, 50S ribosomal protein L1; Validated Back     alignment and domain information
>gnl|CDD|211630 TIGR01169, rplA_bact, ribosomal protein L1, bacterial/chloroplast Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 259
PTZ00029216 60S ribosomal protein L10a; Provisional 100.0
PTZ00225214 60S ribosomal protein L10a; Provisional 100.0
PRK04203215 rpl1P 50S ribosomal protein L1P; Reviewed 100.0
cd00403208 Ribosomal_L1 Ribosomal protein L1. The L1 protein, 100.0
COG0081228 RplA Ribosomal protein L1 [Translation, ribosomal 100.0
CHL00129229 rpl1 ribosomal protein L1; Reviewed 100.0
PRK05424230 rplA 50S ribosomal protein L1; Validated 100.0
TIGR01169227 rplA_bact ribosomal protein L1, bacterial/chloropl 100.0
PF00687220 Ribosomal_L1: Ribosomal protein L1p/L10e family; I 100.0
KOG1570218 consensus 60S ribosomal protein L10A [Translation, 100.0
KOG1685343 consensus Uncharacterized conserved protein [Funct 100.0
KOG1569323 consensus 50S ribosomal protein L1 [Translation, r 99.97
TIGR01170141 rplA_mito ribosomal protein L1, mitochondrial. Thi 99.94
PF13003133 MRL1: Ribosomal protein L1; InterPro: IPR024663 Th 96.75
TIGR01170141 rplA_mito ribosomal protein L1, mitochondrial. Thi 82.34
>PTZ00029 60S ribosomal protein L10a; Provisional Back     alignment and domain information 
Probab=100.00  E-value=8.9e-59  Score=405.98  Aligned_cols=216  Identities=70%  Similarity=1.116  Sum_probs=208.8

Q ss_pred             cCCCCHHHHHHHHHHHHhhhhhccCCCCCeEEEEEEEcccCCCCCCccceeEecCCCCCCCcEEEEEeCcccHHHHHHcC
Q 036232           44 NSKLSSEVLREAVSTICGDAKEKNRNFVETIELQIGLKNYDPQKDKRFSGSVKLPHIPRPMMKVCMLGDAQHVEQAEKIG  123 (259)
Q Consensus        44 ~s~v~~~~v~kAv~~L~~~~~~~~~~f~e~I~l~i~lK~i~~kk~~~~r~~I~LPh~~~~~~~Vcvf~~~~~~~~a~~~g  123 (259)
                      ||.++++++++||++++++...++++|+|+|+++|+||++|+++++++|+.|.|||+++++.+||||++++.+++|+++|
T Consensus         1 m~~~~~~~~~~av~~~~~~~~~~~~~f~esv~~~i~Lk~id~~~~~~ir~~v~LP~~~gk~~~v~V~a~~~~~~~Ak~aG   80 (216)
T PTZ00029          1 MSKLSSEALRKAIAEILEGSEEKKRKFVETVELQIGLKDYDTQKDKRFSGSVKLPNVPKPNLKVCVLGDAVHCDEAKKLG   80 (216)
T ss_pred             CCcCCHHHHHHHHHHHHhhccccccCCceEEEEEEEcCCCCCCcCcccceeEecCCCCCCCcEEEEECCcHHHHHHHHcC
Confidence            56789999999999999876556789999999999999999999999999999999999999999999999999999999


Q ss_pred             CceeCHHHHHHhhhcHHHHHHHhhhcCEEEEeHhhHhhhhhccCCCCCCCCCCCccccCcccHHHHHHHhhcceeeEecc
Q 036232          124 MDYMDVEALKKLNKNKKLVKKLAKKYHAFLASEAVIKQIPRLLGPGLNKAGKFPTLVTHQESLEAKVNETKAVVKFQLKK  203 (259)
Q Consensus       124 a~~vg~~eL~k~~k~~e~~rkL~~~yD~fLad~~i~~~L~rlLGk~f~~~~K~P~~v~~~~dl~~~I~~~~~s~~~~~~~  203 (259)
                      |+++|.++|++.+++++.+++|+.+||+||||+++|+.||++|||+|||++|+|++|+++.|+.++|++++++++|++++
T Consensus        81 a~vvg~edL~~~~k~~k~~kkl~~~fD~flA~~~im~~l~riLGp~l~p~~K~P~~v~~~~d~~~~i~~~k~~v~~r~~k  160 (216)
T PTZ00029         81 LDFMDIEGLKKFNKNKKLVKKLAKKYDAFLASQSLLPQIPRLLGPGLNKAGKFPTLITHNDDIEDKINELKSSVKFQLKK  160 (216)
T ss_pred             CCEecHHHHHHhhhhHHHHhcccccCCEEEECHHHHHHHHHHhccccccCCCCCCcccCccCHHHHHHHHHheEEEEECC
Confidence            99999999999999999999999999999999999999999999999999999999988899999999999999999999


Q ss_pred             ccEEEEEEecCCCChhHHhccHHHHHHHHHHhccccccCeeEEEEEcCCCCCeecC
Q 036232          204 VLCMGVAVGNCSMEEKQVFQNVQLSVNFLVSLLKKSWQNVRCLHLKSTMGRPQRIY  259 (259)
Q Consensus       204 ~~~i~v~IG~~sm~~eql~eNi~avl~~l~~~~p~~~~nI~sv~Lkst~sp~lpIy  259 (259)
                      ++|++++||+++|+++||+|||.+++++|.+.+++||.||+++||||||||+++||
T Consensus       161 ~~~i~v~VG~~~~~~e~l~eNi~avl~~i~~~~~kg~~~Iksv~lktTmgp~v~v~  216 (216)
T PTZ00029        161 VLCLGVAVGNVEMTEEQLRQNIVLSINFLVSLLKKNWQNIKTLHIKSTMGKPQRIY  216 (216)
T ss_pred             CCEEEEEEcCCCCCHHHHHHHHHHHHHHHHHHhccccccEeEEEEECCCCCCEeCC
Confidence            99999999999999999999999999999999999999999999999999999998

>PTZ00225 60S ribosomal protein L10a; Provisional Back     alignment and domain information
>PRK04203 rpl1P 50S ribosomal protein L1P; Reviewed Back     alignment and domain information
>cd00403 Ribosomal_L1 Ribosomal protein L1 Back     alignment and domain information
>COG0081 RplA Ribosomal protein L1 [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>CHL00129 rpl1 ribosomal protein L1; Reviewed Back     alignment and domain information
>PRK05424 rplA 50S ribosomal protein L1; Validated Back     alignment and domain information
>TIGR01169 rplA_bact ribosomal protein L1, bacterial/chloroplast Back     alignment and domain information
>PF00687 Ribosomal_L1: Ribosomal protein L1p/L10e family; InterPro: IPR002143 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms Back     alignment and domain information
>KOG1570 consensus 60S ribosomal protein L10A [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG1685 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG1569 consensus 50S ribosomal protein L1 [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>TIGR01170 rplA_mito ribosomal protein L1, mitochondrial Back     alignment and domain information
>PF13003 MRL1: Ribosomal protein L1; InterPro: IPR024663 This entry represents a ribosomal protein L1 domain found mainly in chordates Back     alignment and domain information
>TIGR01170 rplA_mito ribosomal protein L1, mitochondrial Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query259
3izr_A216 Localization Of The Large Subunit Ribosomal Protein 5e-94
1s1i_A217 Structure Of The Ribosomal 80s-Eef2-Sordarin Comple 9e-62
2noq_G213 Structure Of Ribosome-Bound Cricket Paralysis Virus 6e-60
3zf7_J214 High-resolution Cryo-electron Microscopy Structure 9e-58
3j21_A216 Promiscuous Behavior Of Proteins In Archaeal Riboso 6e-16
1cjs_A219 Crystal Structure Of Ribosomal Protein L1 From Meth 2e-11
1dwu_A213 Ribosomal Protein L1 Length = 213 7e-10
2zkr_5212 Structure Of A Mammalian Ribosomal 60s Subunit With 2e-09
1u63_A219 The Structure Of A Ribosomal Protein L1-Mrna Comple 3e-09
3qoy_A242 Crystal Structure Of Ribosomal Protein L1 From Aqui 6e-08
3fin_C191 T. Thermophilus 70s Ribosome In Complex With Mrna, 7e-06
1mzp_A217 Structure Of The L1 Protuberance In The Ribosome Le 1e-05
3tg8_A228 Mutant Ribosomal Protein L1 Lacking Ala158 From The 4e-05
1ml5_c228 Crystal Structure Of The Ribosome At 5.5 A Resoluti 3e-04
2j01_C229 Structure Of The Thermus Thermophilus 70s Ribosome 3e-04
2hgj_C229 Fitting Of Components With Known Structure Into An 4e-04
3zvp_C229 Crystal Structure Of The Hybrid State Of Ribosome I 5e-04
2v49_C229 Structure Of The Ribosome Recycling Factor Bound To 5e-04
>pdb|3IZR|A Chain A, Localization Of The Large Subunit Ribosomal Proteins Into A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s Ribosome Length = 216 Back     alignment and structure 
Iteration: 1

 Score =  340 bits (872), Expect = 5e-94,   Method: Compositional matrix adjust.
 Identities = 159/215 (73%), Positives = 184/215 (85%)
Query: 45  SKLSSEVLREAVSTICGDAKEKNRNFVETIELQIGLKNYDPQKDKRFSGSVKLPHIPRPM 104
           SKL S+ +++A++ I G+A+EK R F ET+ELQIGLKNYDPQKDKRFSGSVKLPHIPRP 
Sbjct: 2   SKLQSDAVKDAITQIVGEAREKKRKFTETVELQIGLKNYDPQKDKRFSGSVKLPHIPRPK 61
Query: 105 MKVCMLGDAQHVEQAEKIGMDYMDVEXXXXXXXXXXXXXXXXXXYHAFLASEAVIKQIPR 164
           M+VCMLGDAQHV+QAEK+G+DYMDVE                  YHAFLASEA+IKQIPR
Sbjct: 62  MRVCMLGDAQHVDQAEKMGLDYMDVESLKKMNKNKKLVKKLAKKYHAFLASEAIIKQIPR 121
Query: 165 LLGPGLNKAGKFPTLVTHQESLEAKVNETKAVVKFQLKKVLCMGVAVGNCSMEEKQVFQN 224
           LLGPGLNKAGKFPTLV+HQESLEAKVNETKA VKFQLKKVLCMGVAVGN SM+EKQ+ QN
Sbjct: 122 LLGPGLNKAGKFPTLVSHQESLEAKVNETKATVKFQLKKVLCMGVAVGNLSMDEKQIQQN 181
Query: 225 VQLSVNFLVSLLKKSWQNVRCLHLKSTMGRPQRIY 259
           +Q+SVNFLVSLLKK+WQNVRCL++KSTMG+  R++
Sbjct: 182 IQMSVNFLVSLLKKNWQNVRCLYVKSTMGKRVRVF 216
>pdb|1S1I|A Chain A, Structure Of The Ribosomal 80s-Eef2-Sordarin Complex From Yeast Obtained By Docking Atomic Models For Rna And Protein Components Into A 11.7 A Cryo-Em Map. This File, 1s1i, Contains 60s Subunit. The 40s Ribosomal Subunit Is In File 1s1h. Length = 217 Back     alignment and structure
>pdb|2NOQ|G Chain G, Structure Of Ribosome-Bound Cricket Paralysis Virus Ires Rna Length = 213 Back     alignment and structure
>pdb|3ZF7|J Chain J, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 214 Back     alignment and structure
>pdb|3J21|A Chain A, Promiscuous Behavior Of Proteins In Archaeal Ribosomes Revealed By Cryo-em: Implications For Evolution Of Eukaryotic Ribosomes (50s Ribosomal Proteins) Length = 216 Back     alignment and structure
>pdb|1CJS|A Chain A, Crystal Structure Of Ribosomal Protein L1 From Methanococcus Jannaschii Length = 219 Back     alignment and structure
>pdb|1DWU|A Chain A, Ribosomal Protein L1 Length = 213 Back     alignment and structure
>pdb|2ZKR|5 Chain 5, Structure Of A Mammalian Ribosomal 60s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map Length = 212 Back     alignment and structure
>pdb|1U63|A Chain A, The Structure Of A Ribosomal Protein L1-Mrna Complex Length = 219 Back     alignment and structure
>pdb|3QOY|A Chain A, Crystal Structure Of Ribosomal Protein L1 From Aquifex Aeolicus Length = 242 Back     alignment and structure
>pdb|3FIN|C Chain C, T. Thermophilus 70s Ribosome In Complex With Mrna, Trnas And Ef- Tu.Gdp.Kirromycin Ternary Complex, Fitted To A 6.4 A Cryo-Em Map. This File Contains The 50s Subunit Length = 191 Back     alignment and structure
>pdb|1MZP|A Chain A, Structure Of The L1 Protuberance In The Ribosome Length = 217 Back     alignment and structure
>pdb|3TG8|A Chain A, Mutant Ribosomal Protein L1 Lacking Ala158 From Thermus Thermophilus Length = 228 Back     alignment and structure
>pdb|1ML5|CC Chain c, Structure Of The E. Coli Ribosomal Termination Complex With Release Factor 2 Length = 228 Back     alignment and structure
>pdb|2J01|C Chain C, Structure Of The Thermus Thermophilus 70s Ribosome Complexed With Mrna, Trna And Paromomycin (Part 2 Of 4). This File Contains The 50s Subunit From Molecule I. Length = 229 Back     alignment and structure
>pdb|2HGJ|C Chain C, Crystal Structure Of The 70s Thermus Thermophilus Ribosome Showing How The 16s 3'-End Mimicks Mrna E And P Codons. This Entry 2hgj Contains 50s Ribosomal Subunit. The 30s Ribosomal Subunit Can Be Found In Pdb Entry 2hgi. Length = 229 Back     alignment and structure
>pdb|3ZVP|C Chain C, Crystal Structure Of The Hybrid State Of Ribosome In Complex With The Guanosine Triphosphatase Release Factor 3 Length = 229 Back     alignment and structure
>pdb|2V49|C Chain C, Structure Of The Ribosome Recycling Factor Bound To The Thermus Thermophilus 70s Ribosome With Mrna, Asl-Phe And Trna-Fmet (Part 4 Of 4). This File Contains The 50s Subunit Of Molecule 2 Length = 229 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query259
3o58_A217 L10A, 60S ribosomal protein L1; ribosomal RNA and 1e-96
3iz5_A216 60S ribosomal protein L1 (L1P); eukaryotic ribosom 7e-94
2zkr_5212 60S ribosomal protein L10A; protein-RNA complex, 6 1e-86
1mzp_A217 50S ribosomal protein L1P; ribosome, RNA-protein c 6e-83
1i2a_A219 50S ribosomal protein L1P; primary rRNA-binding pr 5e-81
3qoy_A242 50S ribosomal protein L1; beta-alpha-beta, structu 7e-08
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-06
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-05
>3o58_A L10A, 60S ribosomal protein L1; ribosomal RNA and proteins, ribosome; 4.00A {Saccharomyces cerevisiae} PDB: 3izc_A 3izs_A 1s1i_A 3o5h_A 2noq_G 3j0l_B 3j0o_B 3j0p_B 3j0q_B 3jyw_A Length = 217 Back     alignment and structure
 Score =  281 bits (720), Expect = 1e-96
 Identities = 129/216 (59%), Positives = 168/216 (77%), Gaps = 1/216 (0%)

Query: 45  SKLSSEVLREAVSTICGDAKE-KNRNFVETIELQIGLKNYDPQKDKRFSGSVKLPHIPRP 103
           SK++S  +RE V  +   + E K RNF+ET+ELQ+GLKNYDPQ+DKRFSGS+KLP+ PRP
Sbjct: 2   SKITSSQVREHVKELLKYSNETKKRNFLETVELQVGLKNYDPQRDKRFSGSLKLPNCPRP 61

Query: 104 MMKVCMLGDAQHVEQAEKIGMDYMDVEALKKLNKNKKLVKKLAKKYHAFLASEAVIKQIP 163
            M +C+ GDA  V++A+  G+D M V+ LKKLNKNKKL+KKL+KKY+AF+ASE +IKQ+P
Sbjct: 62  NMSICIFGDAFDVDRAKSCGVDAMSVDDLKKLNKNKKLIKKLSKKYNAFIASEVLIKQVP 121

Query: 164 RLLGPGLNKAGKFPTLVTHQESLEAKVNETKAVVKFQLKKVLCMGVAVGNCSMEEKQVFQ 223
           RLLGP L+KAGKFPT V+H + L  KV + ++ +KFQLKKVLC+ VAVGN  MEE  +  
Sbjct: 122 RLLGPQLSKAGKFPTPVSHNDDLYGKVTDVRSTIKFQLKKVLCLAVAVGNVEMEEDVLVN 181

Query: 224 NVQLSVNFLVSLLKKSWQNVRCLHLKSTMGRPQRIY 259
            + +SVNF VSLLKK+WQNV  L +KS+MG   R+Y
Sbjct: 182 QILMSVNFFVSLLKKNWQNVGSLVVKSSMGPAFRLY 217
>2zkr_5 60S ribosomal protein L10A; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} Length = 212 Back     alignment and structure
>1mzp_A 50S ribosomal protein L1P; ribosome, RNA-protein complex; 2.65A {Sulfolobus acidocaldarius} SCOP: e.24.1.1 PDB: 1pnu_5 1pny_5 1vor_7 1vou_7 1vow_7 1voy_7 1vp0_7 3e1b_Z 3e1d_Z Length = 217 Back     alignment and structure
>1i2a_A 50S ribosomal protein L1P; primary rRNA-binding protein, translation repressor, ribosome; 1.85A {Methanocaldococcus jannaschii} SCOP: e.24.1.1 PDB: 1cjs_A 1u63_A 1dwu_A Length = 219 Back     alignment and structure
>3qoy_A 50S ribosomal protein L1; beta-alpha-beta, structural constituent of ribosome, rRNA BI regulation of translation, translation, ribosomal RNA; 2.10A {Aquifex aeolicus} Length = 242 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query259
3iz5_A216 60S ribosomal protein L1 (L1P); eukaryotic ribosom 100.0
1i2a_A219 50S ribosomal protein L1P; primary rRNA-binding pr 100.0
3o58_A217 L10A, 60S ribosomal protein L1; ribosomal RNA and 100.0
3j21_A216 50S ribosomal protein L1P; archaea, archaeal, KINK 100.0
1mzp_A217 50S ribosomal protein L1P; ribosome, RNA-protein c 100.0
2zkr_5212 60S ribosomal protein L10A; protein-RNA complex, 6 100.0
3qoy_A242 50S ribosomal protein L1; beta-alpha-beta, structu 100.0
2wwq_5234 50S ribosomal protein L1; ribosomal protein, ribon 100.0
3bbo_D352 Ribosomal protein L1; large ribosomal subunit, spi 100.0
3u42_A229 50S ribosomal protein L1; rossmann fold, rRNA bind 100.0
2ftc_A189 Mitochondrial ribosomal protein L1; mitochondrial 100.0
2ov7_A137 50S ribosomal protein L1; 2.30A {Thermus thermophi 99.93
>1i2a_A 50S ribosomal protein L1P; primary rRNA-binding protein, translation repressor, ribosome; 1.85A {Methanocaldococcus jannaschii} SCOP: e.24.1.1 PDB: 1cjs_A 1u63_A 1dwu_A Back     alignment and structure
>3o58_A L10A, 60S ribosomal protein L1; ribosomal RNA and proteins, ribosome; 4.00A {Saccharomyces cerevisiae} PDB: 3izc_A 1s1i_A 3izs_A 3o5h_A 2noq_G 3j0l_B 3j0o_B 3j0p_B 3j0q_B 3jyw_A Back     alignment and structure
>3j21_A 50S ribosomal protein L1P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus} Back     alignment and structure
>1mzp_A 50S ribosomal protein L1P; ribosome, RNA-protein complex; 2.65A {Sulfolobus acidocaldarius} SCOP: e.24.1.1 PDB: 1pnu_5 1pny_5 1vor_7 1vou_7 1vow_7 1voy_7 1vp0_7 3e1b_Z 3e1d_Z Back     alignment and structure
>2zkr_5 60S ribosomal protein L10A; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} Back     alignment and structure
>3qoy_A 50S ribosomal protein L1; beta-alpha-beta, structural constituent of ribosome, rRNA BI regulation of translation, translation, ribosomal RNA; 2.10A {Aquifex aeolicus} Back     alignment and structure
>2wwq_5 50S ribosomal protein L1; ribosomal protein, ribonucleoprotein, nucleotide-binding, protein biosynthesis, translation, zinc-finger; HET: 5MU; 5.80A {Escherichia coli} PDB: 3fik_5 3izt_C* 3izu_C* 3j01_5 3j0t_C* 3j0w_C* 3j0y_C* 3j11_C* 3j12_C* 3j14_C* 3kcr_5 2rdo_9 2gya_2 2gyc_2 Back     alignment and structure
>3bbo_D Ribosomal protein L1; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} Back     alignment and structure
>3u42_A 50S ribosomal protein L1; rossmann fold, rRNA binding, RNA binding; 1.35A {Thermus thermophilus} PDB: 3u56_A 3u4m_A 1eg0_N 1vsp_A 2hgj_C 2hgq_C 2hgu_C 1vsa_A 4f9t_A* 4abs_C 3zvp_C 1zho_A 1ml5_c* 1yl3_C 1giy_C 3umy_A 2hw8_A 2j01_C 2j03_C 2om7_K* ... Back     alignment and structure
>2ftc_A Mitochondrial ribosomal protein L1; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus} Back     alignment and structure
>2ov7_A 50S ribosomal protein L1; 2.30A {Thermus thermophilus} PDB: 2oum_A 2vpl_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 259
d1mzpa_217 e.24.1.1 (A:) Ribosomal protein L1 {Archaeon Sulfo 2e-44
d1i2aa_212 e.24.1.1 (A:) Ribosomal protein L1 {Archaeon Metha 2e-42
d1ad2a_224 e.24.1.1 (A:) Ribosomal protein L1 {Thermus thermo 1e-26
>d1mzpa_ e.24.1.1 (A:) Ribosomal protein L1 {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} Length = 217 Back     information, alignment and structure

class: Multi-domain proteins (alpha and beta)
fold: Ribosomal protein L1
superfamily: Ribosomal protein L1
family: Ribosomal protein L1
domain: Ribosomal protein L1
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

 Score =  147 bits (371), Expect = 2e-44
 Identities = 58/213 (27%), Positives = 104/213 (48%), Gaps = 3/213 (1%)

Query: 48  SSEVLREAVSTICGDAKEKNRNFVETIELQIGLKNYDPQK-DKRFSGSVKLPHIPRPMMK 106
             E L EA+           RNF +++E+ +  K  D +K D +    V LP  P    +
Sbjct: 4   DKESLIEALKLALSTEYNVKRNFTQSVEIILTFKGIDMKKGDLKLREIVPLPKQPSKAKR 63

Query: 107 VCMLGDAQHVEQAEKIGMD-YMDVEALKKLNKNKKLVKKLAKKYHAFLASEAVIKQIPRL 165
           V ++  ++ +E A+K      +  E L+KL   K+ VKKLA++   FL ++  +    R+
Sbjct: 64  VLVVPSSEQLEYAKKASPKVVITREELQKLQGQKRPVKKLARQNEWFLINQESMALAGRI 123

Query: 166 LGPGLNKAGKFPTLVTHQESLEAKVNETKAVVKFQLKKVLCMGVAVGNCSMEEKQVFQNV 225
           LGP L   GKFPT + +   +   +N  K  V  + K    + V +G   M+ + + +N 
Sbjct: 124 LGPALGPRGKFPTPLPNTADISEYINRFKRSVLVKTKDQPQVQVFIGTEDMKPEDLAENA 183

Query: 226 QLSVNFLVSLLKKSWQNVRCLHLKSTMGRPQRI 258
              +N + +  K    N+R +++K+TMG+  ++
Sbjct: 184 IAVLNAIENKAKV-ETNLRNIYVKTTMGKAVKV 215
>d1i2aa_ e.24.1.1 (A:) Ribosomal protein L1 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 212 Back     information, alignment and structure
>d1ad2a_ e.24.1.1 (A:) Ribosomal protein L1 {Thermus thermophilus [TaxId: 274]} Length = 224 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query259
d1i2aa_212 Ribosomal protein L1 {Archaeon Methanococcus janna 100.0
d1mzpa_217 Ribosomal protein L1 {Archaeon Sulfolobus acidocal 100.0
d1ad2a_224 Ribosomal protein L1 {Thermus thermophilus [TaxId: 100.0
>d1i2aa_ e.24.1.1 (A:) Ribosomal protein L1 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
class: Multi-domain proteins (alpha and beta)
fold: Ribosomal protein L1
superfamily: Ribosomal protein L1
family: Ribosomal protein L1
domain: Ribosomal protein L1
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=100.00  E-value=8.3e-53  Score=364.43  Aligned_cols=210  Identities=28%  Similarity=0.420  Sum_probs=202.3

Q ss_pred             CCHHHHHHHHHHHHhhhhhccCCCCCeEEEEEEEcccCCCC-CCccceeEecCCCCCCCcEEEEEeCcccHHHHHHcCCc
Q 036232           47 LSSEVLREAVSTICGDAKEKNRNFVETIELQIGLKNYDPQK-DKRFSGSVKLPHIPRPMMKVCMLGDAQHVEQAEKIGMD  125 (259)
Q Consensus        47 v~~~~v~kAv~~L~~~~~~~~~~f~e~I~l~i~lK~i~~kk-~~~~r~~I~LPh~~~~~~~Vcvf~~~~~~~~a~~~ga~  125 (259)
                      +|++.+.+||+.+++..  ++++|+|+|+|+|+|+++|++| ++++|+.|.|||++++..+|||||+++++++|+++||+
T Consensus         1 ~~~~~~~~ai~~~~~~~--k~rkF~esvel~i~Lk~iD~kk~d~~irg~v~LPh~~gk~~kV~Vf~~~e~~~~Ak~aga~   78 (212)
T d1i2aa_           1 MDREALLQAVKEARELA--KPRNFTQSFEFIATLKEIDMRKPENRIKTEVVLPHGRGKEAKIAVIGTGDLAKQAEELGLT   78 (212)
T ss_dssp             CCHHHHHHHHHHHHHHS--CCCSSCCEEEEEEEESSCCTTSGGGCCEEEEECTTCCSSCCCEEEECCHHHHHHHHHTTCE
T ss_pred             CCHHHHHHHHHHHHHhC--CccCCCceEEEEEecCCCCCCcccceeeeEeeCCCCCCCcceEEEEechhhHHHhhhcccc
Confidence            68999999999999965  5578999999999999999999 88999999999999999999999999999999999999


Q ss_pred             eeCHHHHHHhhhcHHHHHHHhhhcCEEEEeHhhHhhhhhccCCCCCCCCCCCccccCcccHHHHHHHhhcceeeEecccc
Q 036232          126 YMDVEALKKLNKNKKLVKKLAKKYHAFLASEAVIKQIPRLLGPGLNKAGKFPTLVTHQESLEAKVNETKAVVKFQLKKVL  205 (259)
Q Consensus       126 ~vg~~eL~k~~k~~e~~rkL~~~yD~fLad~~i~~~L~rlLGk~f~~~~K~P~~v~~~~dl~~~I~~~~~s~~~~~~~~~  205 (259)
                      ++|+++|.+.+++++..++++.+||+|||+++|||.|+++||+.|+|+++||+|+..+.|+.++++++++++.|+.++.+
T Consensus        79 ~vg~~el~~~~~~~~~~kk~~~~~D~~iat~~~m~~l~k~lgkiLGpkglmP~p~~~t~di~~~v~~~k~~~~~~~~~~~  158 (212)
T d1i2aa_          79 VIRKEEIEELGKNKRKLRKIAKAHDFFIAQADLMPLIGRYMGVILGPRGKMPKPVPANANIKPLVERLKKTVVINTRDKP  158 (212)
T ss_dssp             EECHHHHHHHHHCHHHHHHHHHHCSEEEEEGGGHHHHHHHTHHHHGGGTCCCEEECTTCCCHHHHHHHHTEEEEECTTSS
T ss_pred             ccCcHHHHHHHhhhhhhhcccccCCeEEecchHHHHHHHHhhhhhhhhhccccCCcccchhhHHHHHHhcceeeeecCCc
Confidence            99999999999999889999999999999999999999999999999999999998889999999999999999999999


Q ss_pred             EEEEEEecCCCChhHHhccHHHHHHHHHHhccccccCeeEEEEEcCCCCCeec
Q 036232          206 CMGVAVGNCSMEEKQVFQNVQLSVNFLVSLLKKSWQNVRCLHLKSTMGRPQRI  258 (259)
Q Consensus       206 ~i~v~IG~~sm~~eql~eNi~avl~~l~~~~p~~~~nI~sv~Lkst~sp~lpI  258 (259)
                      +++++||+++|+++||.|||.+++++|.+.+|+||.||+++|||||||||++|
T Consensus       159 ~i~~~IG~~~m~~e~i~eNi~a~~~~i~~~~pkg~~~Ik~v~lssTmgp~~~i  211 (212)
T d1i2aa_         159 YFQVLVGNEKMTDEQIVDNIEAVLNVVAKKYEKGLYHIKDAYVKLTMGPAVKV  211 (212)
T ss_dssp             EEEEEEEETTSCHHHHHHHHHHHHHHHHHHSTTGGGGEEEEEEEETTSCCEEC
T ss_pred             eEEEeeeeccCCHHHHHHHHHHHHHHHHhhCcCCceeEEEEEEECCCCCCEec
Confidence            99999999999999999999999999999999999999999999999999987
>d1mzpa_ e.24.1.1 (A:) Ribosomal protein L1 {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} Back     information, alignment and structure
>d1ad2a_ e.24.1.1 (A:) Ribosomal protein L1 {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure