Citrus Sinensis ID: 036237
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 689 | 2.2.26 [Sep-21-2011] | |||||||
| Q9LN01 | 741 | Pentatricopeptide repeat- | yes | no | 0.976 | 0.908 | 0.413 | 1e-158 | |
| O82380 | 738 | Pentatricopeptide repeat- | no | no | 0.985 | 0.920 | 0.382 | 1e-153 | |
| Q9SY02 | 781 | Pentatricopeptide repeat- | no | no | 0.879 | 0.775 | 0.410 | 1e-141 | |
| Q9FI80 | 646 | Pentatricopeptide repeat- | no | no | 0.801 | 0.854 | 0.429 | 1e-139 | |
| Q9LUJ2 | 842 | Pentatricopeptide repeat- | no | no | 0.939 | 0.768 | 0.382 | 1e-139 | |
| O23337 | 722 | Pentatricopeptide repeat- | no | no | 0.956 | 0.912 | 0.373 | 1e-138 | |
| Q9LTV8 | 694 | Pentatricopeptide repeat- | no | no | 0.944 | 0.938 | 0.381 | 1e-136 | |
| Q9FJY7 | 620 | Pentatricopeptide repeat- | no | no | 0.815 | 0.906 | 0.411 | 1e-135 | |
| Q7Y211 | 890 | Pentatricopeptide repeat- | no | no | 0.873 | 0.676 | 0.401 | 1e-130 | |
| Q9SR82 | 685 | Putative pentatricopeptid | no | no | 0.955 | 0.960 | 0.378 | 1e-129 |
| >sp|Q9LN01|PPR21_ARATH Pentatricopeptide repeat-containing protein At1g08070 OS=Arabidopsis thaliana GN=PCMP-H12 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 559 bits (1441), Expect = e-158, Method: Compositional matrix adjust.
Identities = 298/721 (41%), Positives = 439/721 (60%), Gaps = 48/721 (6%)
Query: 11 PIHALQQHLPSRLHWNILKFSSTHKETQQLHALSVKTNLIYHSGISSRLLSLYV-DPHIN 69
P +++ H PS ++L T + + +HA +K L + S+L+ + PH
Sbjct: 27 PYDSIRNH-PS---LSLLHNCKTLQSLRIIHAQMIKIGLHNTNYALSKLIEFCILSPHFE 82
Query: 70 NLHYARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVI 129
L YA S+F + +Q P+L+++N + + + + AL L+ ++ LLP+++T P V+
Sbjct: 83 GLPYAISVF-KTIQEPNLLIWNTMFRGHALSSDPVSALKLYVCMISLGLLPNSYTFPFVL 141
Query: 130 KGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLV 189
K A+ A KEG+QIHG V KLG D +V +SL+SMY + G ++ +VFD +D+V
Sbjct: 142 KSCAKSKAFKEGQQIHGHVLKLGCDLDLYVHTSLISMYVQNGRLEDAHKVFDKSPHRDVV 201
Query: 190 SWNCLIDGYVKKGEVEVAMKLFDEMPDRDLFSWTCLVDGFSKCGKVEIAREIFYRM---- 245
S+ LI GY +G +E A KLFDE+P +D+ SW ++ G+++ G + A E+F M
Sbjct: 202 SYTALIKGYASRGYIENAQKLFDEIPVKDVVSWNAMISGYAETGNYKEALELFKDMMKTN 261
Query: 246 --PNR---------------------------------NLVSWNAMINGYMKAGDVDSAC 270
P+ NL NA+I+ Y K G++++AC
Sbjct: 262 VRPDESTMVTVVSACAQSGSIELGRQVHLWIDDHGFGSNLKIVNALIDLYSKCGELETAC 321
Query: 271 ELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLA 330
LF+ + +D+I+WN++I GY + EAL L + ML PND T++S L A A L
Sbjct: 322 GLFERLPYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHLG 381
Query: 331 VLNKGRWMHSYIVK--NGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAM 388
++ GRW+H YI K G L T LI MY+KCG IE+A VF +I K + W AM
Sbjct: 382 AIDIGRWIHVYIDKRLKGVTNASSLRTSLIDMYAKCGDIEAAHQVFNSILHKSLSSWNAM 441
Query: 389 IVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYG 448
I G MHG A + DLF++M ++G++P ITF+G+L+ACSH+G+++ GR F M DY
Sbjct: 442 IFGFAMHGRADASFDLFSRMRKIGIQPDDITFVGLLSACSHSGMLDLGRHIFRTMTQDYK 501
Query: 449 IEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAA 508
+ P +EHYGC++D+L +G +EA+ I M M P+ VIW SLL + HGN ++GE A
Sbjct: 502 MTPKLEHYGCMIDLLGHSGLFKEAEEMINMMEMEPDGVIWCSLLKACKMHGNVELGESFA 561
Query: 509 NNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLHEF 568
NLIK+ P+ G YV+LSNIYA+AG+W++V++ R ++ +G +K PG SSIE V+HEF
Sbjct: 562 ENLIKIEPENPGSYVLLSNIYASAGRWNEVAKTRALLNDKGMKKVPGCSSIEIDSVVHEF 621
Query: 569 VVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELENHSERLAIA 628
++GDK HP+ EI+ L EM L+ AG VPDT++VL +E++ KE L +HSE+LAIA
Sbjct: 622 IIGDKFHPRNREIYGMLEEMEVLLEKAGFVPDTSEVLQEMEEE-WKEGALRHHSEKLAIA 680
Query: 629 FGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGSCSCKDF 688
FGLI+ K + + IVKNLRVC +CH TKL+S IY REII RD +RFHHF++G CSC D+
Sbjct: 681 FGLISTKPGTKLTIVKNLRVCRNCHEATKLISKIYKREIIARDRTRFHHFRDGVCSCNDY 740
Query: 689 W 689
W
Sbjct: 741 W 741
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|O82380|PP175_ARATH Pentatricopeptide repeat-containing protein At2g29760, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H33 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 543 bits (1398), Expect = e-153, Method: Compositional matrix adjust.
Identities = 276/722 (38%), Positives = 431/722 (59%), Gaps = 43/722 (5%)
Query: 9 SSPIHALQQHLPSRLHWNILKFSSTHKETQQLHALSVKTNLIYHSGISSRLLSLYVDPHI 68
S+P + SR H ++++ + ++ +Q H ++T +S+L ++
Sbjct: 19 SNPNQPTTNNERSR-HISLIERCVSLRQLKQTHGHMIRTGTFSDPYSASKLFAMAALSSF 77
Query: 69 NNLHYARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLL-DRFLLPDNFTLPC 127
+L YAR +FD I + P+ +N LI+ Y ++ F D++ + P+ +T P
Sbjct: 78 ASLEYARKVFDEIPK-PNSFAWNTLIRAYASGPDPVLSIWAFLDMVSESQCYPNKYTFPF 136
Query: 128 VIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKD 187
+IK AA + ++ G+ +HG+ K G D FV +SL+ Y G++D +VF + +KD
Sbjct: 137 LIKAAAEVSSLSLGQSLHGMAVKSAVGSDVFVANSLIHCYFSCGDLDSACKVFTTIKEKD 196
Query: 188 LVSWNCLIDGYVKKGEVEVAMKLFDEMPDRD----------------------------- 218
+VSWN +I+G+V+KG + A++LF +M D
Sbjct: 197 VVSWNSMINGFVQKGSPDKALELFKKMESEDVKASHVTMVGVLSACAKIRNLEFGRQVCS 256
Query: 219 ----------LFSWTCLVDGFSKCGKVEIAREIFYRMPNRNLVSWNAMINGYMKAGDVDS 268
L ++D ++KCG +E A+ +F M ++ V+W M++GY + D ++
Sbjct: 257 YIEENRVNVNLTLANAMLDMYTKCGSIEDAKRLFDAMEEKDNVTWTTMLDGYAISEDYEA 316
Query: 269 ACELFDDMEIRDLITWNSMIAGYELNGRFMEALELL-ETMLIGDVLPNDATLVSALSAVA 327
A E+ + M +D++ WN++I+ YE NG+ EAL + E L ++ N TLVS LSA A
Sbjct: 317 AREVLNSMPQKDIVAWNALISAYEQNGKPNEALIVFHELQLQKNMKLNQITLVSTLSACA 376
Query: 328 GLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTA 387
+ L GRW+HSYI K+G ++ + + LI MYSKCG +E + VF ++ K+ V W+A
Sbjct: 377 QVGALELGRWIHSYIKKHGIRMNFHVTSALIHMYSKCGDLEKSREVFNSVEKRDVFVWSA 436
Query: 388 MIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDY 447
MI GL MHG +A+D+F KM +KP +TF V ACSH GLV++ F+ M ++Y
Sbjct: 437 MIGGLAMHGCGNEAVDMFYKMQEANVKPNGVTFTNVFCACSHTGLVDEAESLFHQMESNY 496
Query: 448 GIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYA 507
GI P +HY C+VD+L R+GYLE+A IE+MP+ P+ +W +LL + H N ++ E A
Sbjct: 497 GIVPEEKHYACIVDVLGRSGYLEKAVKFIEAMPIPPSTSVWGALLGACKIHANLNLAEMA 556
Query: 508 ANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLHE 567
L+++ P G +V+LSNIYA G+W+ VSE+R+ M+ G +K+PG SSIE G++HE
Sbjct: 557 CTRLLELEPRNDGAHVLLSNIYAKLGKWENVSELRKHMRVTGLKKEPGCSSIEIDGMIHE 616
Query: 568 FVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELENHSERLAI 627
F+ GD +HP +++++ KL E+ KLK+ G+ P+ +QVL IE+++ KE L HSE+LAI
Sbjct: 617 FLSGDNAHPMSEKVYGKLHEVMEKLKSNGYEPEISQVLQIIEEEEMKEQSLNLHSEKLAI 676
Query: 628 AFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGSCSCKD 687
+GLI+ ++ IR++KNLRVC DCHSV KL+S +Y+REIIVRD RFHHF+NG CSC D
Sbjct: 677 CYGLISTEAPKVIRVIKNLRVCGDCHSVAKLISQLYDREIIVRDRYRFHHFRNGQCSCND 736
Query: 688 FW 689
FW
Sbjct: 737 FW 738
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SY02|PP301_ARATH Pentatricopeptide repeat-containing protein At4g02750 OS=Arabidopsis thaliana GN=PCMP-H24 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 501 bits (1289), Expect = e-141, Method: Compositional matrix adjust.
Identities = 253/616 (41%), Positives = 375/616 (60%), Gaps = 10/616 (1%)
Query: 74 ARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAA 133
ARS+FDR+ + V +N L+ YV N + EA LF + L+ N C++ G
Sbjct: 176 ARSVFDRMPEKND-VSWNALLSAYVQNSKMEEACMLFKSRENWALVSWN----CLLGGFV 230
Query: 134 RLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNC 193
+ I E +Q F D +++++ YA+ G+ID R++FD +D+ +W
Sbjct: 231 KKKKIVEARQF----FDSMNVRDVVSWNTIITGYAQSGKIDEARQLFDESPVQDVFTWTA 286
Query: 194 LIDGYVKKGEVEVAMKLFDEMPDRDLFSWTCLVDGFSKCGKVEIAREIFYRMPNRNLVSW 253
++ GY++ VE A +LFD+MP+R+ SW ++ G+ + ++E+A+E+F MP RN+ +W
Sbjct: 287 MVSGYIQNRMVEEARELFDKMPERNEVSWNAMLAGYVQGERMEMAKELFDVMPCRNVSTW 346
Query: 254 NAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVL 313
N MI GY + G + A LFD M RD ++W +MIAGY +G EAL L M
Sbjct: 347 NTMITGYAQCGKISEAKNLFDKMPKRDPVSWAAMIAGYSQSGHSFEALRLFVQMEREGGR 406
Query: 314 PNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTV 373
N ++ SALS A + L G+ +H +VK G+ +G L+ MY KCGSIE A +
Sbjct: 407 LNRSSFSSALSTCADVVALELGKQLHGRLVKGGYETGCFVGNALLLMYCKCGSIEEANDL 466
Query: 374 FRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLV 433
F+ ++ K + W MI G HG AL F M R G+KP T + VL+ACSH GLV
Sbjct: 467 FKEMAGKDIVSWNTMIAGYSRHGFGEVALRFFESMKREGLKPDDATMVAVLSACSHTGLV 526
Query: 434 NDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLS 493
+ GR+YF M DYG+ P +HY C+VD+L R G LE+A + +++MP P+ IW +LL
Sbjct: 527 DKGRQYFYTMTQDYGVMPNSQHYACMVDLLGRAGLLEDAHNLMKNMPFEPDAAIWGTLLG 586
Query: 494 GARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKD 553
+R HGN ++ E AA+ + + P+ G YV+LSN+YA++G+W V ++R M+ +G +K
Sbjct: 587 ASRVHGNTELAETAADKIFAMEPENSGMYVLLSNLYASSGRWGDVGKLRVRMRDKGVKKV 646
Query: 554 PGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKE 613
PG S IE + H F VGD+ HP+ DEI + L E+ ++K AG+V T+ VL +E++ E
Sbjct: 647 PGYSWIEIQNKTHTFSVGDEFHPEKDEIFAFLEELDLRMKKAGYVSKTSVVLHDVEEE-E 705
Query: 614 KEAELENHSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNS 673
KE + HSERLA+A+G++ V S PIR++KNLRVC DCH+ K ++ I R II+RDN+
Sbjct: 706 KERMVRYHSERLAVAYGIMRVSSGRPIRVIKNLRVCEDCHNAIKYMARITGRLIILRDNN 765
Query: 674 RFHHFKNGSCSCKDFW 689
RFHHFK+GSCSC D+W
Sbjct: 766 RFHHFKDGSCSCGDYW 781
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FI80|PP425_ARATH Pentatricopeptide repeat-containing protein At5g48910 OS=Arabidopsis thaliana GN=PCMP-H38 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 496 bits (1276), Expect = e-139, Method: Compositional matrix adjust.
Identities = 263/613 (42%), Positives = 370/613 (60%), Gaps = 61/613 (9%)
Query: 137 AIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFG----EIDLGRRVFDAMDDKDLVSWN 192
I++ QIH + K G D + ++ A ++D ++F+ M ++ SWN
Sbjct: 35 TIRDLSQIHAVFIKSGQMRDTLAAAEILRFCATSDLHHRDLDYAHKIFNQMPQRNCFSWN 94
Query: 193 CLIDGYVKKGEVE--VAMKLFDEM-------PDR-------------------------- 217
+I G+ + E + +A+ LF EM P+R
Sbjct: 95 TIIRGFSESDEDKALIAITLFYEMMSDEFVEPNRFTFPSVLKACAKTGKIQEGKQIHGLA 154
Query: 218 -------DLFSWTCLVDGFSKCGKVEIAREIFYR---------MPNR-----NLVSWNAM 256
D F + LV + CG ++ AR +FY+ M +R +V WN M
Sbjct: 155 LKYGFGGDEFVMSNLVRMYVMCGFMKDARVLFYKNIIEKDMVVMTDRRKRDGEIVLWNVM 214
Query: 257 INGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPND 316
I+GYM+ GD +A LFD M R +++WN+MI+GY LNG F +A+E+ M GD+ PN
Sbjct: 215 IDGYMRLGDCKAARMLFDKMRQRSVVSWNTMISGYSLNGFFKDAVEVFREMKKGDIRPNY 274
Query: 317 ATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRA 376
TLVS L A++ L L G W+H Y +G +D VLG+ LI MYSKCG IE A+ VF
Sbjct: 275 VTLVSVLPAISRLGSLELGEWLHLYAEDSGIRIDDVLGSALIDMYSKCGIIEKAIHVFER 334
Query: 377 ISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDG 436
+ ++ V W+AMI G +HG A A+D F KM + G++P+ + +I +L ACSH GLV +G
Sbjct: 335 LPRENVITWSAMINGFAIHGQAGDAIDCFCKMRQAGVRPSDVAYINLLTACSHGGLVEEG 394
Query: 437 RRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGAR 496
RRYF+ M++ G+EP IEHYGC+VD+L R+G L+EA+ I +MP++P+ VIW +LL R
Sbjct: 395 RRYFSQMVSVDGLEPRIEHYGCMVDLLGRSGLLDEAEEFILNMPIKPDDVIWKALLGACR 454
Query: 497 NHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGS 556
GN ++G+ AN L+ + P G YV LSN+YA+ G W +VSE+R MK++ RKDPG
Sbjct: 455 MQGNVEMGKRVANILMDMVPHDSGAYVALSNMYASQGNWSEVSEMRLRMKEKDIRKDPGC 514
Query: 557 SSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEA 616
S I+ GVLHEFVV D SHP+ EI+S L E+ +KL+ AG+ P TTQVLL +E++ +KE
Sbjct: 515 SLIDIDGVLHEFVVEDDSHPKAKEINSMLVEISDKLRLAGYRPITTQVLLNLEEE-DKEN 573
Query: 617 ELENHSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFH 676
L HSE++A AFGLI+ PIRIVKNLR+C DCHS KL+S +Y R+I VRD RFH
Sbjct: 574 VLHYHSEKIATAFGLISTSPGKPIRIVKNLRICEDCHSSIKLISKVYKRKITVRDRKRFH 633
Query: 677 HFKNGSCSCKDFW 689
HF++GSCSC D+W
Sbjct: 634 HFQDGSCSCMDYW 646
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LUJ2|PP249_ARATH Pentatricopeptide repeat-containing protein At3g22690 OS=Arabidopsis thaliana GN=PCMP-H56 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 495 bits (1275), Expect = e-139, Method: Compositional matrix adjust.
Identities = 265/692 (38%), Positives = 405/692 (58%), Gaps = 45/692 (6%)
Query: 39 QLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLIKCYV 98
Q+H L VK + + L+ Y + L AR +FD + + ++V + +I Y
Sbjct: 155 QIHGLIVKMGYAKDLFVQNSLVHFYAE--CGELDSARKVFDEMSER-NVVSWTSMICGYA 211
Query: 99 FNQRSHEALTLFCDLL-DRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDK 157
+ +A+ LF ++ D + P++ T+ CVI A+L ++ G++++ + G +
Sbjct: 212 RRDFAKDAVDLFFRMVRDEEVTPNSVTMVCVISACAKLEDLETGEKVYAFIRNSGIEVND 271
Query: 158 FVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEM--- 214
++S+LV MY K ID+ +R+FD +L N + YV++G A+ +F+ M
Sbjct: 272 LMVSALVDMYMKCNAIDVAKRLFDEYGASNLDLCNAMASNYVRQGLTREALGVFNLMMDS 331
Query: 215 ---PDR-----------------------------DLFSW----TCLVDGFSKCGKVEIA 238
PDR SW L+D + KC + + A
Sbjct: 332 GVRPDRISMLSAISSCSQLRNILWGKSCHGYVLRNGFESWDNICNALIDMYMKCHRQDTA 391
Query: 239 REIFYRMPNRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFM 298
IF RM N+ +V+WN+++ GY++ G+VD+A E F+ M +++++WN++I+G F
Sbjct: 392 FRIFDRMSNKTVVTWNSIVAGYVENGEVDAAWETFETMPEKNIVSWNTIISGLVQGSLFE 451
Query: 299 EALELLETMLIGDVLPNDA-TLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLL 357
EA+E+ +M + + D T++S SA L L+ +W++ YI KNG +D LGT L
Sbjct: 452 EAIEVFCSMQSQEGVNADGVTMMSIASACGHLGALDLAKWIYYYIEKNGIQLDVRLGTTL 511
Query: 358 IQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTA 417
+ M+S+CG ESA+++F +++ + V WTA I + M G A +A++LF+ M G+KP
Sbjct: 512 VDMFSRCGDPESAMSIFNSLTNRDVSAWTAAIGAMAMAGNAERAIELFDDMIEQGLKPDG 571
Query: 418 ITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIE 477
+ F+G L ACSH GLV G+ F M+ +G+ P HYGC+VD+L R G LEEA IE
Sbjct: 572 VAFVGALTACSHGGLVQQGKEIFYSMLKLHGVSPEDVHYGCMVDLLGRAGLLEEAVQLIE 631
Query: 478 SMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDK 537
MPM PN VIW SLL+ R GN ++ YAA + +AP+ G YV+LSN+YA+AG+W+
Sbjct: 632 DMPMEPNDVIWNSLLAACRVQGNVEMAAYAAEKIQVLAPERTGSYVLLSNVYASAGRWND 691
Query: 538 VSEVREMMKKRGFRKDPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGH 597
+++VR MK++G RK PG+SSI+ RG HEF GD+SHP+ I + L E+ + GH
Sbjct: 692 MAKVRLSMKEKGLRKPPGTSSIQIRGKTHEFTSGDESHPEMPNIEAMLDEVSQRASHLGH 751
Query: 598 VPDTTQVLLCIEDQKEKEAELENHSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTK 657
VPD + VL+ + D+KEK L HSE+LA+A+GLI+ + IRIVKNLRVC+DCHS K
Sbjct: 752 VPDLSNVLMDV-DEKEKIFMLSRHSEKLAMAYGLISSNKGTTIRIVKNLRVCSDCHSFAK 810
Query: 658 LLSGIYNREIIVRDNSRFHHFKNGSCSCKDFW 689
S +YNREII+RDN+RFH+ + G CSC DFW
Sbjct: 811 FASKVYNREIILRDNNRFHYIRQGKCSCGDFW 842
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|O23337|PP311_ARATH Pentatricopeptide repeat-containing protein At4g14820 OS=Arabidopsis thaliana GN=PCMP-H3 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 493 bits (1268), Expect = e-138, Method: Compositional matrix adjust.
Identities = 264/707 (37%), Positives = 408/707 (57%), Gaps = 48/707 (6%)
Query: 28 LKFSSTHKETQQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSL 87
L F + +QLHA ++T + + ++S L +L V NL YA ++F I P
Sbjct: 19 LSFCKSLNHIKQLHAHILRT--VINHKLNSFLFNLSVSSSSINLSYALNVFSSIPSPPES 76
Query: 88 VLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGL 147
+++N ++ + + + + D F+ ++K +++ A+ EG ++HG+
Sbjct: 77 IVFNPFLRDLSRSSEPRATILFYQRIRHVGGRLDQFSFLPILKAVSKVSALFEGMELHGV 136
Query: 148 VFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVA 207
FK+ D FV + + MYA G I+ R VFD M +D+V+WN +I+ Y + G V+ A
Sbjct: 137 AFKIATLCDPFVETGFMDMYASCGRINYARNVFDEMSHRDVVTWNTMIERYCRFGLVDEA 196
Query: 208 MKLFDEMPD--------------------------RDLFSW-------------TCLVDG 228
KLF+EM D R ++ + T LV
Sbjct: 197 FKLFEEMKDSNVMPDEMILCNIVSACGRTGNMRYNRAIYEFLIENDVRMDTHLLTALVTM 256
Query: 229 FSKCGKVEIAREIFYRMPNRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMI 288
++ G +++ARE F +M RNL AM++GY K G +D A +FD E +DL+ W +MI
Sbjct: 257 YAGAGCMDMAREFFRKMSVRNLFVSTAMVSGYSKCGRLDDAQVIFDQTEKKDLVCWTTMI 316
Query: 289 AGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFV 348
+ Y + EAL + E M + P+ ++ S +SA A L +L+K +W+HS I NG
Sbjct: 317 SAYVESDYPQEALRVFEEMCCSGIKPDVVSMFSVISACANLGILDKAKWVHSCIHVNGLE 376
Query: 349 VDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKM 408
+ + LI MY+KCG +++ VF + ++ V W++MI L MHG A+ AL LF +M
Sbjct: 377 SELSINNALINMYAKCGGLDATRDVFEKMPRRNVVSWSSMINALSMHGEASDALSLFARM 436
Query: 409 CRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGY 468
+ ++P +TF+GVL CSH+GLV +G++ F M ++Y I P +EHYGC+VD+ R
Sbjct: 437 KQENVEPNEVTFVGVLYGCSHSGLVEEGKKIFASMTDEYNITPKLEHYGCMVDLFGRANL 496
Query: 469 LEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNI 528
L EA IESMP+ N VIW SL+S R HG ++G++AA ++++ PD G V++SNI
Sbjct: 497 LREALEVIESMPVASNVVIWGSLMSACRIHGELELGKFAAKRILELEPDHDGALVLMSNI 556
Query: 529 YAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEM 588
YA +W+ V +R +M+++ K+ G S I+ G HEF++GDK H Q++EI++KL E+
Sbjct: 557 YAREQRWEDVRNIRRVMEEKNVFKEKGLSRIDQNGKSHEFLIGDKRHKQSNEIYAKLDEV 616
Query: 589 RNKLKAAGHVPDTTQVLLCIEDQKEKEAELENHSERLAIAFGLINVKSRSP------IRI 642
+KLK AG+VPD VL+ +E++++K+ L HSE+LA+ FGL+N + IRI
Sbjct: 617 VSKLKLAGYVPDCGSVLVDVEEEEKKDLVLW-HSEKLALCFGLMNEEKEEEKDSCGVIRI 675
Query: 643 VKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGSCSCKDFW 689
VKNLRVC DCH KL+S +Y REIIVRD +RFH +KNG CSC+D+W
Sbjct: 676 VKNLRVCEDCHLFFKLVSKVYEREIIVRDRTRFHCYKNGLCSCRDYW 722
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LTV8|PP224_ARATH Pentatricopeptide repeat-containing protein At3g12770 OS=Arabidopsis thaliana GN=PCMP-H43 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 486 bits (1250), Expect = e-136, Method: Compositional matrix adjust.
Identities = 257/673 (38%), Positives = 404/673 (60%), Gaps = 22/673 (3%)
Query: 31 SSTHK-ETQQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVL 89
S+THK + +Q+HA + L + + ++L+ + ++ +AR +FD L P +
Sbjct: 30 SATHKAQLKQIHARLLVLGLQFSGFLITKLI--HASSSFGDITFARQVFDD-LPRPQIFP 86
Query: 90 YNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVF 149
+N +I+ Y N +AL ++ ++ + PD+FT P ++K + L ++ G+ +H VF
Sbjct: 87 WNAIIRGYSRNNHFQDALLMYSNMQLARVSPDSFTFPHLLKACSGLSHLQMGRFVHAQVF 146
Query: 150 KLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMD--DKDLVSWNCLIDGYVKKGEVEVA 207
+LGF D FV + L+++YAK + R VF+ + ++ +VSW ++ Y + GE A
Sbjct: 147 RLGFDADVFVQNGLIALYAKCRRLGSARTVFEGLPLPERTIVSWTAIVSAYAQNGEPMEA 206
Query: 208 MKLFDEMPDRDLFS-WTCLV---DGFSKCGKVEIAREIFYRMPNRNL-------VSWNAM 256
+++F +M D+ W LV + F+ ++ R I + L +S N M
Sbjct: 207 LEIFSQMRKMDVKPDWVALVSVLNAFTCLQDLKQGRSIHASVVKMGLEIEPDLLISLNTM 266
Query: 257 INGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPND 316
Y K G V +A LFD M+ +LI WN+MI+GY NG EA+++ M+ DV P+
Sbjct: 267 ---YAKCGQVATAKILFDKMKSPNLILWNAMISGYAKNGYAREAIDMFHEMINKDVRPDT 323
Query: 317 ATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRA 376
++ SA+SA A + L + R M+ Y+ ++ + D + + LI M++KCGS+E A VF
Sbjct: 324 ISITSAISACAQVGSLEQARSMYEYVGRSDYRDDVFISSALIDMFAKCGSVEGARLVFDR 383
Query: 377 ISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDG 436
+ V W+AMIVG G+HG A +A+ L+ M R G+ P +TF+G+L AC+H+G+V +G
Sbjct: 384 TLDRDVVVWSAMIVGYGLHGRAREAISLYRAMERGGVHPNDVTFLGLLMACNHSGMVREG 443
Query: 437 RRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGAR 496
+FN M D+ I P +HY C++D+L R G+L++A I+ MP++P +W +LLS +
Sbjct: 444 WWFFNRMA-DHKINPQQQHYACVIDLLGRAGHLDQAYEVIKCMPVQPGVTVWGALLSACK 502
Query: 497 NHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGS 556
H + ++GEYAA L + P G YV LSN+YAAA WD+V+EVR MK++G KD G
Sbjct: 503 KHRHVELGEYAAQQLFSIDPSNTGHYVQLSNLYAAARLWDRVAEVRVRMKEKGLNKDVGC 562
Query: 557 SSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEA 616
S +E RG L F VGDKSHP+ +EI ++ + ++LK G V + L + D+ E E
Sbjct: 563 SWVEVRGRLEAFRVGDKSHPRYEEIERQVEWIESRLKEGGFVANKDASLHDLNDE-EAEE 621
Query: 617 ELENHSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFH 676
L +HSER+AIA+GLI+ +P+RI KNLR C +CH+ TKL+S + +REI+VRD +RFH
Sbjct: 622 TLCSHSERIAIAYGLISTPQGTPLRITKNLRACVNCHAATKLISKLVDREIVVRDTNRFH 681
Query: 677 HFKNGSCSCKDFW 689
HFK+G CSC D+W
Sbjct: 682 HFKDGVCSCGDYW 694
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FJY7|PP449_ARATH Pentatricopeptide repeat-containing protein At5g66520 OS=Arabidopsis thaliana GN=PCMP-H61 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 482 bits (1240), Expect = e-135, Method: Compositional matrix adjust.
Identities = 250/608 (41%), Positives = 354/608 (58%), Gaps = 46/608 (7%)
Query: 124 TLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDL---GRRVF 180
T+ C+ R +E KQIH + K G D + ++ +S D + VF
Sbjct: 17 TMSCL----QRCSKQEELKQIHARMLKTGLMQDSYAITKFLSFCISSTSSDFLPYAQIVF 72
Query: 181 DAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEM------------P------------- 215
D D D WN +I G+ E E ++ L+ M P
Sbjct: 73 DGFDRPDTFLWNLMIRGFSCSDEPERSLLLYQRMLCSSAPHNAYTFPSLLKACSNLSAFE 132
Query: 216 --------------DRDLFSWTCLVDGFSKCGKVEIAREIFYRMPNRNLVSWNAMINGYM 261
+ D+++ L++ ++ G ++A +F R+P + VSWN++I GY+
Sbjct: 133 ETTQIHAQITKLGYENDVYAVNSLINSYAVTGNFKLAHLLFDRIPEPDDVSWNSVIKGYV 192
Query: 262 KAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVS 321
KAG +D A LF M ++ I+W +MI+GY EAL+L M DV P++ +L +
Sbjct: 193 KAGKMDIALTLFRKMAEKNAISWTTMISGYVQADMNKEALQLFHEMQNSDVEPDNVSLAN 252
Query: 322 ALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKK 381
ALSA A L L +G+W+HSY+ K +D VLG +LI MY+KCG +E AL VF+ I KK
Sbjct: 253 ALSACAQLGALEQGKWIHSYLNKTRIRMDSVLGCVLIDMYAKCGEMEEALEVFKNIKKKS 312
Query: 382 VGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFN 441
V WTA+I G HG +A+ F +M +MG+KP ITF VL ACS+ GLV +G+ F
Sbjct: 313 VQAWTALISGYAYHGHGREAISKFMEMQKMGIKPNVITFTAVLTACSYTGLVEEGKLIFY 372
Query: 442 MMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNK 501
M DY ++PTIEHYGC+VD+L R G L+EAK I+ MP++PN VIW +LL R H N
Sbjct: 373 SMERDYNLKPTIEHYGCIVDLLGRAGLLDEAKRFIQEMPLKPNAVIWGALLKACRIHKNI 432
Query: 502 DIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEH 561
++GE LI + P G YV +NI+A +WDK +E R +MK++G K PG S+I
Sbjct: 433 ELGEEIGEILIAIDPYHGGRYVHKANIHAMDKKWDKAAETRRLMKEQGVAKVPGCSTISL 492
Query: 562 RGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELENH 621
G HEF+ GD+SHP+ ++I SK MR KL+ G+VP+ ++LL + D E+EA + H
Sbjct: 493 EGTTHEFLAGDRSHPEIEKIQSKWRIMRRKLEENGYVPELEEMLLDLVDDDEREAIVHQH 552
Query: 622 SERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNG 681
SE+LAI +GLI K + IRI+KNLRVC DCH VTKL+S IY R+I++RD +RFHHF++G
Sbjct: 553 SEKLAITYGLIKTKPGTIIRIMKNLRVCKDCHKVTKLISKIYKRDIVMRDRTRFHHFRDG 612
Query: 682 SCSCKDFW 689
CSC D+W
Sbjct: 613 KCSCGDYW 620
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q7Y211|PP285_ARATH Pentatricopeptide repeat-containing protein At3g57430, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H81 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 464 bits (1194), Expect = e-130, Method: Compositional matrix adjust.
Identities = 251/625 (40%), Positives = 367/625 (58%), Gaps = 23/625 (3%)
Query: 87 LVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHG 146
LV +N ++ N++ EAL +++ + PD FT+ V+ + L ++ GK++H
Sbjct: 267 LVTWNTVLSSLCQNEQLLEALEYLREMVLEGVEPDEFTISSVLPACSHLEMLRTGKELHA 326
Query: 147 LVFKLG-FGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVE 205
K G + FV S+LV MY ++ GRRVFD M D+ + WN +I GY + +
Sbjct: 327 YALKNGSLDENSFVGSALVDMYCNCKQVLSGRRVFDGMFDRKIGLWNAMIAGYSQNEHDK 386
Query: 206 VAMKLFDEMPDRD--LFSWTCLVDGFSKC-------GKVEIAREIFYRMPNRNLVSWNAM 256
A+ LF M + L + T + C K I + R +R+ N +
Sbjct: 387 EALLLFIGMEESAGLLANSTTMAGVVPACVRSGAFSRKEAIHGFVVKRGLDRDRFVQNTL 446
Query: 257 INGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGD----- 311
++ Y + G +D A +F ME RDL+TWN+MI GY + +AL LL M +
Sbjct: 447 MDMYSRLGKIDIAMRIFGKMEDRDLVTWNTMITGYVFSEHHEDALLLLHKMQNLERKVSK 506
Query: 312 ------VLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCG 365
+ PN TL++ L + A L+ L KG+ +H+Y +KN D +G+ L+ MY+KCG
Sbjct: 507 GASRVSLKPNSITLMTILPSCAALSALAKGKEIHAYAIKNNLATDVAVGSALVDMYAKCG 566
Query: 366 SIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLN 425
++ + VF I +K V W +I+ GMHG +A+DL M G+KP +TFI V
Sbjct: 567 CLQMSRKVFDQIPQKNVITWNVIIMAYGMHGNGQEAIDLLRMMMVQGVKPNEVTFISVFA 626
Query: 426 ACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNF 485
ACSH+G+V++G R F +M DYG+EP+ +HY C+VD+L R G ++EA + MP N
Sbjct: 627 ACSHSGMVDEGLRIFYVMKPDYGVEPSSDHYACVVDLLGRAGRIKEAYQLMNMMPRDFNK 686
Query: 486 V-IWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREM 544
W SLL +R H N +IGE AA NLI++ P+ YV+L+NIY++AG WDK +EVR
Sbjct: 687 AGAWSSLLGASRIHNNLEIGEIAAQNLIQLEPNVASHYVLLANIYSSAGLWDKATEVRRN 746
Query: 545 MKKRGFRKDPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQV 604
MK++G RK+PG S IEH +H+FV GD SHPQ++++ L + +++ G+VPDT+ V
Sbjct: 747 MKEQGVRKEPGCSWIEHGDEVHKFVAGDSSHPQSEKLSGYLETLWERMRKEGYVPDTSCV 806
Query: 605 LLCIEDQKEKEAELENHSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYN 664
L +E+ EKE L HSE+LAIAFG++N + IR+ KNLRVCNDCH TK +S I +
Sbjct: 807 LHNVEED-EKEILLCGHSEKLAIAFGILNTSPGTIIRVAKNLRVCNDCHLATKFISKIVD 865
Query: 665 REIIVRDNSRFHHFKNGSCSCKDFW 689
REII+RD RFH FKNG+CSC D+W
Sbjct: 866 REIILRDVRRFHRFKNGTCSCGDYW 890
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SR82|PP219_ARATH Putative pentatricopeptide repeat-containing protein At3g08820 OS=Arabidopsis thaliana GN=PCMP-H84 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 461 bits (1187), Expect = e-129, Method: Compositional matrix adjust.
Identities = 261/690 (37%), Positives = 383/690 (55%), Gaps = 32/690 (4%)
Query: 26 NILKFSSTHKETQQLHAL-SVKTNLIYHSGISSRLLS--LYVDPHINNLHYARSIFDRIL 82
+I+ S + QQ+ L SV + + I L++ L+ D + NL R++F R
Sbjct: 2 SIVTVPSATSKVQQIKTLISVACTVNHLKQIHVSLINHHLHHDTFLVNLLLKRTLFFRQT 61
Query: 83 ----------QHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGA 132
Q P++ LYN LI +V N HE L LF + L FT P V+K
Sbjct: 62 KYSYLLFSHTQFPNIFLYNSLINGFVNNHLFHETLDLFLSIRKHGLYLHGFTFPLVLKAC 121
Query: 133 ARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWN 192
R + K G +H LV K GF D ++SL+S+Y+ G ++ ++FD + D+ +V+W
Sbjct: 122 TRASSRKLGIDLHSLVVKCGFNHDVAAMTSLLSIYSGSGRLNDAHKLFDEIPDRSVVTWT 181
Query: 193 CLIDGYVKKGEVEVAMKLFDEM------PDRDLFSWTCLVDGFSKC---GKVEIAREIFY 243
L GY G A+ LF +M PD +V S C G ++ I
Sbjct: 182 ALFSGYTTSGRHREAIDLFKKMVEMGVKPDSYF-----IVQVLSACVHVGDLDSGEWIVK 236
Query: 244 RMP----NRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFME 299
M +N ++N Y K G ++ A +FD M +D++TW++MI GY N E
Sbjct: 237 YMEEMEMQKNSFVRTTLVNLYAKCGKMEKARSVFDSMVEKDIVTWSTMIQGYASNSFPKE 296
Query: 300 ALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQ 359
+EL ML ++ P+ ++V LS+ A L L+ G W S I ++ F+ + + LI
Sbjct: 297 GIELFLQMLQENLKPDQFSIVGFLSSCASLGALDLGEWGISLIDRHEFLTNLFMANALID 356
Query: 360 MYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAIT 419
MY+KCG++ VF+ + +K + A I GL +G + +F + ++G+ P T
Sbjct: 357 MYAKCGAMARGFEVFKEMKEKDIVIMNAAISGLAKNGHVKLSFAVFGQTEKLGISPDGST 416
Query: 420 FIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESM 479
F+G+L C HAGL+ DG R+FN + Y ++ T+EHYGC+VD+ R G L++A I M
Sbjct: 417 FLGLLCGCVHAGLIQDGLRFFNAISCVYALKRTVEHYGCMVDLWGRAGMLDDAYRLICDM 476
Query: 480 PMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVS 539
PMRPN ++W +LLSG R + + E LI + P G YV LSNIY+ G+WD+ +
Sbjct: 477 PMRPNAIVWGALLSGCRLVKDTQLAETVLKELIALEPWNAGNYVQLSNIYSVGGRWDEAA 536
Query: 540 EVREMMKKRGFRKDPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVP 599
EVR+MM K+G +K PG S IE G +HEF+ DKSHP +D+I++KL ++ N+++ G VP
Sbjct: 537 EVRDMMNKKGMKKIPGYSWIELEGKVHEFLADDKSHPLSDKIYAKLEDLGNEMRLMGFVP 596
Query: 600 DTTQVLLCIEDQKEKEAELENHSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLL 659
T V +E++ EKE L HSE+LA+A GLI+ IR+VKNLRVC DCH V KL+
Sbjct: 597 TTEFVFFDVEEE-EKERVLGYHSEKLAVALGLISTDHGQVIRVVKNLRVCGDCHEVMKLI 655
Query: 660 SGIYNREIIVRDNSRFHHFKNGSCSCKDFW 689
S I REI+VRDN+RFH F NGSCSC D+W
Sbjct: 656 SKITRREIVVRDNNRFHCFTNGSCSCNDYW 685
|
Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 689 | ||||||
| 359485813 | 679 | PREDICTED: pentatricopeptide repeat-cont | 0.947 | 0.961 | 0.716 | 0.0 | |
| 449453744 | 681 | PREDICTED: pentatricopeptide repeat-cont | 0.978 | 0.989 | 0.682 | 0.0 | |
| 296085005 | 631 | unnamed protein product [Vitis vinifera] | 0.910 | 0.993 | 0.648 | 0.0 | |
| 255581780 | 434 | pentatricopeptide repeat-containing prot | 0.611 | 0.970 | 0.705 | 1e-171 | |
| 225434622 | 743 | PREDICTED: pentatricopeptide repeat-cont | 0.953 | 0.884 | 0.432 | 1e-165 | |
| 225450565 | 672 | PREDICTED: pentatricopeptide repeat-cont | 0.931 | 0.955 | 0.430 | 1e-163 | |
| 225456890 | 698 | PREDICTED: pentatricopeptide repeat-cont | 0.959 | 0.946 | 0.432 | 1e-162 | |
| 297849104 | 741 | pentatricopeptide repeat-containing prot | 0.976 | 0.908 | 0.418 | 1e-162 | |
| 147775281 | 673 | hypothetical protein VITISV_030555 [Viti | 0.931 | 0.953 | 0.430 | 1e-162 | |
| 225423499 | 738 | PREDICTED: pentatricopeptide repeat-cont | 0.981 | 0.915 | 0.424 | 1e-162 |
| >gi|359485813|ref|XP_003633340.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760, chloroplastic-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 985 bits (2546), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 469/655 (71%), Positives = 553/655 (84%), Gaps = 2/655 (0%)
Query: 35 KETQQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLI 94
+E +QLHA S+KT + H +SSRLL+LY DP IN+L YARSIFDRI Q SL+ +N +I
Sbjct: 27 QEVEQLHAFSLKTAIFNHPFVSSRLLALYSDPKINDLGYARSIFDRI-QRRSLIHWNTII 85
Query: 95 KCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFG 154
KCYV NQ SH+ + LF +L+ +L PDNFTLPCVIKG ARLG ++EGKQIHGL K+GFG
Sbjct: 86 KCYVENQFSHDGIVLFHELVHEYL-PDNFTLPCVIKGCARLGVVQEGKQIHGLALKIGFG 144
Query: 155 FDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEM 214
D FV SLV+MY+K GEID R+VFD M DKD+V WN LIDGY + GE+++A++LF+EM
Sbjct: 145 SDVFVQGSLVNMYSKCGEIDCARKVFDGMIDKDVVLWNSLIDGYARCGEIDIALQLFEEM 204
Query: 215 PDRDLFSWTCLVDGFSKCGKVEIAREIFYRMPNRNLVSWNAMINGYMKAGDVDSACELFD 274
P+RD FSWT LVDG SKCGKVE AR++F +MP RNLVSWNAMINGYMK+GD DSA ELF
Sbjct: 205 PERDAFSWTVLVDGLSKCGKVESARKLFDQMPCRNLVSWNAMINGYMKSGDFDSALELFY 264
Query: 275 DMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNK 334
M I DL+TWN MIAGYELNG+FM+A+++ ML P+ ATLVS LSAV+GLAVL K
Sbjct: 265 QMPIWDLVTWNLMIAGYELNGQFMDAVKMFFMMLKLGSRPSHATLVSVLSAVSGLAVLGK 324
Query: 335 GRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGM 394
GRW+HSY+ KNGF +DG+LGT LI+MY+KCG IESALTVFRAI KKKVGHWTA+IVGLG+
Sbjct: 325 GRWIHSYMEKNGFELDGILGTSLIEMYAKCGCIESALTVFRAIQKKKVGHWTAIIVGLGI 384
Query: 395 HGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIE 454
HGMA AL LF +MC+ G+KP AI FIGVLNAC+HAGLV+DGR+YF+MM+N+Y IEPT+E
Sbjct: 385 HGMANHALALFLEMCKTGLKPNAIIFIGVLNACNHAGLVDDGRQYFDMMMNEYKIEPTLE 444
Query: 455 HYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKV 514
HYGCLVDILCR G+LEEAK+TIE+MP+ PN VIWMSLL G+RNHG DIGEYAA +I+V
Sbjct: 445 HYGCLVDILCRAGHLEEAKNTIENMPISPNKVIWMSLLGGSRNHGKIDIGEYAAQRVIEV 504
Query: 515 APDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLHEFVVGDKS 574
AP+TIGCY++LSN+YAA+G W+KVS VREMM KRGFRKDPG SS+EH+G LHEF+VGD S
Sbjct: 505 APETIGCYILLSNMYAASGMWEKVSHVREMMYKRGFRKDPGCSSVEHKGTLHEFIVGDIS 564
Query: 575 HPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELENHSERLAIAFGLINV 634
HPQT EI++K+SEM+ KLK GHVPDTTQVLLCIE +KEKEAELENHSERLAIAFGLINV
Sbjct: 565 HPQTKEIYAKMSEMKEKLKCVGHVPDTTQVLLCIEGEKEKEAELENHSERLAIAFGLINV 624
Query: 635 KSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGSCSCKDFW 689
K PIRI+KNLRVCNDCHSVTKLLS IY+REIIVRDN RFHHFKNGSCSC D+W
Sbjct: 625 KPGIPIRIMKNLRVCNDCHSVTKLLSKIYSREIIVRDNCRFHHFKNGSCSCMDYW 679
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449453744|ref|XP_004144616.1| PREDICTED: pentatricopeptide repeat-containing protein At1g08070-like [Cucumis sativus] gi|449511814|ref|XP_004164061.1| PREDICTED: pentatricopeptide repeat-containing protein At1g08070-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 971 bits (2511), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 462/677 (68%), Positives = 560/677 (82%), Gaps = 3/677 (0%)
Query: 13 HALQQHLPSRLHWNILKFSSTHKETQQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLH 72
H+LQ LP LH+ L+ T +E QLHALS+KT + H +SSRLL+LY DP INNL
Sbjct: 8 HSLQPFLPPNLHFP-LQNCGTEREANQLHALSIKTASLNHPSVSSRLLALYADPRINNLQ 66
Query: 73 YARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGA 132
YA S+FD I Q P+LV +NLLIKCY+ NQRS++A+ LFC LL F+ PD+FTLPCV+KG
Sbjct: 67 YAHSLFDWI-QEPTLVSWNLLIKCYIENQRSNDAIALFCKLLCDFV-PDSFTLPCVLKGC 124
Query: 133 ARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWN 192
ARLGA++EGKQIHGLV K+GFG DKFVLSSLVSMY+K GEI+L R+VFD M+DKD+VSWN
Sbjct: 125 ARLGALQEGKQIHGLVLKIGFGVDKFVLSSLVSMYSKCGEIELCRKVFDRMEDKDVVSWN 184
Query: 193 CLIDGYVKKGEVEVAMKLFDEMPDRDLFSWTCLVDGFSKCGKVEIAREIFYRMPNRNLVS 252
LIDGY + GE+E+A+++F+EMP++D FSWT L+DG SK GK+E AR++F RMP RN VS
Sbjct: 185 SLIDGYARCGEIELALEMFEEMPEKDSFSWTILIDGLSKSGKLEAARDVFDRMPIRNSVS 244
Query: 253 WNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDV 312
WNAMINGYMKAGD ++A ELFD M R L+TWNSMI GYE N +F +AL+L E ML D+
Sbjct: 245 WNAMINGYMKAGDSNTAKELFDQMPERSLVTWNSMITGYERNKQFTKALKLFEVMLREDI 304
Query: 313 LPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALT 372
PN T++ A+SA +G+ L GRW+HSYIVK+GF DGVLGTLLI+MYSKCGS++SAL
Sbjct: 305 SPNYTTILGAVSAASGMVSLGTGRWVHSYIVKSGFKTDGVLGTLLIEMYSKCGSVKSALR 364
Query: 373 VFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGL 432
VFR+I KKK+GHWT++IVGLGMHG+ Q L+LF++MCR G+KP AITFIGVLNACSHAG
Sbjct: 365 VFRSIPKKKLGHWTSVIVGLGMHGLVEQTLELFDEMCRTGLKPHAITFIGVLNACSHAGF 424
Query: 433 VNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLL 492
D RYF MM DYGI+P+IEHYGCL+D+LCR G+LEEAK TIE MP++ N VIW SLL
Sbjct: 425 AEDAHRYFKMMTYDYGIKPSIEHYGCLIDVLCRAGHLEEAKDTIERMPIKANKVIWTSLL 484
Query: 493 SGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRK 552
SG+R HGN +GEYAA +LI +APDT GCYV+LSN+YAAAG W+KV +VREMMKK+G +K
Sbjct: 485 SGSRKHGNIRMGEYAAQHLIDLAPDTTGCYVILSNMYAAAGLWEKVRQVREMMKKKGMKK 544
Query: 553 DPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQK 612
DPG SSIEH+G +HEF+VGDKSHPQT+EI+ KL EM+ KL AGH+PDTTQVLLC+E+
Sbjct: 545 DPGCSSIEHQGSIHEFIVGDKSHPQTEEIYIKLCEMKKKLNVAGHIPDTTQVLLCLEEDN 604
Query: 613 EKEAELENHSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDN 672
EKEAELE HSERLAIAFGL+N+K SPIRI+KNLR+CNDCH+VTKLLS IYNREII+RD
Sbjct: 605 EKEAELETHSERLAIAFGLLNIKHGSPIRIIKNLRICNDCHAVTKLLSHIYNREIIIRDG 664
Query: 673 SRFHHFKNGSCSCKDFW 689
SRFHHFK+GSCSCKDFW
Sbjct: 665 SRFHHFKSGSCSCKDFW 681
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|296085005|emb|CBI28420.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 896 bits (2316), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 441/680 (64%), Positives = 524/680 (77%), Gaps = 53/680 (7%)
Query: 10 SPIHALQQHLPSRLHWNILKFSSTHKETQQLHALSVKTNLIYHSGISSRLLSLYVDPHIN 69
+P H+LQQ+LP LH ++ + S +E +QLHA S+KT + H +SSRLL+LY DP IN
Sbjct: 5 TPFHSLQQYLPHNLHLSLFQTCSAPQEVEQLHAFSLKTAIFNHPFVSSRLLALYSDPKIN 64
Query: 70 NLHYARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVI 129
+L YARSIFDRI Q SL+ +N +IKCYV NQ SH+ + LF +L+ +L PDNFTLPCVI
Sbjct: 65 DLGYARSIFDRI-QRRSLIHWNTIIKCYVENQFSHDGIVLFHELVHEYL-PDNFTLPCVI 122
Query: 130 KGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLV 189
KG ARLG ++EGKQIHGL K+GFG D FV SLV+MY+K
Sbjct: 123 KGCARLGVVQEGKQIHGLALKIGFGSDVFVQGSLVNMYSKC------------------- 163
Query: 190 SWNCLIDGYVKKGEVEVAMKLFDEMPDRDLFSWTCLVDGFSKCGKVEIAREIFYRMPNRN 249
GE++ A K+FD M D+D+ W L+DG N
Sbjct: 164 ------------GEIDCARKVFDGMIDKDVVLWNSLIDG--------------------N 191
Query: 250 LVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLI 309
LVSWNAMINGYMK+GD DSA ELF M I DL+TWN MIAGYELNG+FM+A+++ ML
Sbjct: 192 LVSWNAMINGYMKSGDFDSALELFYQMPIWDLVTWNLMIAGYELNGQFMDAVKMFFMMLK 251
Query: 310 GDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIES 369
P+ ATLVS LSAV+GLAVL KGRW+HSY+ KNGF +DG+LGT LI+MY+KCG IES
Sbjct: 252 LGSRPSHATLVSVLSAVSGLAVLGKGRWIHSYMEKNGFELDGILGTSLIEMYAKCGCIES 311
Query: 370 ALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSH 429
ALTVFRAI KKKVGHWTA+IVGLG+HGMA AL LF +MC+ G+KP AI FIGVLNAC+H
Sbjct: 312 ALTVFRAIQKKKVGHWTAIIVGLGIHGMANHALALFLEMCKTGLKPNAIIFIGVLNACNH 371
Query: 430 AGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWM 489
AGLV+DGR+YF+MM+N+Y IEPT+EHYGCLVDILCR G+LEEAK+TIE+MP+ PN VIWM
Sbjct: 372 AGLVDDGRQYFDMMMNEYKIEPTLEHYGCLVDILCRAGHLEEAKNTIENMPISPNKVIWM 431
Query: 490 SLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRG 549
SLL G+RNHG DIGEYAA +I+VAP+TIGCY++LSN+YAA+G W+KVS VREMM KRG
Sbjct: 432 SLLGGSRNHGKIDIGEYAAQRVIEVAPETIGCYILLSNMYAASGMWEKVSHVREMMYKRG 491
Query: 550 FRKDPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIE 609
FRKDPG SS+EH+G LHEF+VGD SHPQT EI++K+SEM+ KLK GHVPDTTQVLLCIE
Sbjct: 492 FRKDPGCSSVEHKGTLHEFIVGDISHPQTKEIYAKMSEMKEKLKCVGHVPDTTQVLLCIE 551
Query: 610 DQKEKEAELENHSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIV 669
+KEKEAELENHSERLAIAFGLINVK PIRI+KNLRVCNDCHSVTKLLS IY+REIIV
Sbjct: 552 GEKEKEAELENHSERLAIAFGLINVKPGIPIRIMKNLRVCNDCHSVTKLLSKIYSREIIV 611
Query: 670 RDNSRFHHFKNGSCSCKDFW 689
RDN RFHHFKNGSCSC D+W
Sbjct: 612 RDNCRFHHFKNGSCSCMDYW 631
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255581780|ref|XP_002531691.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] gi|223528667|gb|EEF30682.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 609 bits (1571), Expect = e-171, Method: Compositional matrix adjust.
Identities = 299/424 (70%), Positives = 351/424 (82%), Gaps = 3/424 (0%)
Query: 20 PSRLHWNILKFSSTHKETQQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFD 79
PS LH+++LK S T KET+QLHALSVKTN H ISS LLSLY +P INNL Y SIF+
Sbjct: 8 PS-LHFSLLKTSKTDKETKQLHALSVKTNTFSHPSISSCLLSLYAEPKINNLEYVLSIFN 66
Query: 80 RILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIK 139
+I Q P+LVLYN+LIKCY+ NQ SH+A+TLF LL F PD FTLPCVIKG ARL A K
Sbjct: 67 KI-QEPALVLYNILIKCYIQNQLSHDAITLFSQLLHEFN-PDGFTLPCVIKGCARLHATK 124
Query: 140 EGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYV 199
EGKQIHGLV KLGFG +KFV SSLV+MY+K +ID ++VF +MDDKDLVSWN LIDGYV
Sbjct: 125 EGKQIHGLVLKLGFGLNKFVSSSLVNMYSKCKDIDSAKKVFLSMDDKDLVSWNSLIDGYV 184
Query: 200 KKGEVEVAMKLFDEMPDRDLFSWTCLVDGFSKCGKVEIAREIFYRMPNRNLVSWNAMING 259
K G+VE+ MKLF+EMP+RDLFSWT L+DGFSKCGKV++ARE+F +MP+RNLVSWNAMING
Sbjct: 185 KCGQVELGMKLFEEMPERDLFSWTVLIDGFSKCGKVDVARELFDKMPSRNLVSWNAMING 244
Query: 260 YMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATL 319
YMKAGD A ELFD M ++LI+WNSM+AGY+LN RF EAL+L TML D PN ATL
Sbjct: 245 YMKAGDFVLASELFDKMPEKNLISWNSMVAGYDLNERFKEALDLFLTMLERDFTPNHATL 304
Query: 320 VSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISK 379
VS SAV+GLA L+ G+WMHSY+VKNGF +DGVL T LI MYSKCG+IESAL+VF+ I+K
Sbjct: 305 VSTFSAVSGLASLSTGKWMHSYMVKNGFQLDGVLATSLINMYSKCGNIESALSVFQLITK 364
Query: 380 KKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRY 439
KK+GHWTA+IVGLGMHGMA AL+ F++MCR GM+P AITFIGVLNACSHAGLV DGR+Y
Sbjct: 365 KKLGHWTAIIVGLGMHGMADNALEFFHEMCRTGMRPHAITFIGVLNACSHAGLVEDGRKY 424
Query: 440 FNMM 443
F+MM
Sbjct: 425 FDMM 428
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225434622|ref|XP_002279360.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760, chloroplastic-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 587 bits (1513), Expect = e-165, Method: Compositional matrix adjust.
Identities = 302/699 (43%), Positives = 426/699 (60%), Gaps = 42/699 (6%)
Query: 32 STHKETQQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYN 91
S K+ +Q+HA ++T L + +SRL++ +L YA+ +FD+I HP+L +N
Sbjct: 46 SETKQLKQIHAQMLRTGLFFDPFSASRLITAAALSPFPSLDYAQQVFDQI-PHPNLYTWN 104
Query: 92 LLIKCYVFNQRSHEALTLFCDLLDRFL-LPDNFTLPCVIKGAARLGAIKEGKQIHGLVFK 150
LI+ Y + H++L +F +L + PD FT P +IK A+ L + GK HG+V K
Sbjct: 105 TLIRAYASSSNPHQSLLIFLRMLHQSPDFPDKFTFPFLIKAASELEELFTGKAFHGMVIK 164
Query: 151 LGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKL 210
+ G D F+L+SL+ YAK GE+ LG RVF + +D+VSWN +I +V+ G E A++L
Sbjct: 165 VLLGSDVFILNSLIHFYAKCGELGLGYRVFVNIPRRDVVSWNSMITAFVQGGCPEEALEL 224
Query: 211 FDEM----------------------PDRDLFSWT-----------------CLVDGFSK 231
F EM D + W ++D ++K
Sbjct: 225 FQEMETQNVKPNGITMVGVLSACAKKSDFEFGRWVHSYIERNRIGESLTLSNAMLDMYTK 284
Query: 232 CGKVEIAREIFYRMPNRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGY 291
CG VE A+ +F +MP +++VSW M+ GY K G+ D+A +FD M +D+ WN++I+ Y
Sbjct: 285 CGSVEDAKRLFDKMPEKDIVSWTTMLVGYAKIGEYDAAQGIFDAMPNQDIAAWNALISAY 344
Query: 292 ELNGRFMEALELL-ETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVD 350
E G+ EALEL E L P++ TLVS LSA A L ++ G W+H YI K G ++
Sbjct: 345 EQCGKPKEALELFHELQLSKTAKPDEVTLVSTLSACAQLGAMDLGGWIHVYIKKQGMKLN 404
Query: 351 GVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCR 410
L T LI MY KCG ++ AL VF ++ +K V W+AMI GL MHG A+ LF+KM
Sbjct: 405 CHLTTSLIDMYCKCGDLQKALMVFHSVERKDVFVWSAMIAGLAMHGHGKDAIALFSKMQE 464
Query: 411 MGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLE 470
+KP A+TF +L ACSH GLV +GR +FN M YG+ P ++HY C+VDIL R G LE
Sbjct: 465 DKVKPNAVTFTNILCACSHVGLVEEGRTFFNQMELVYGVLPGVKHYACMVDILGRAGLLE 524
Query: 471 EAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYA 530
EA IE MPM P +W +LL H N + E A + LI++ P G YV+LSNIYA
Sbjct: 525 EAVELIEKMPMAPAASVWGALLGACTIHENVVLAEQACSQLIELEPGNHGAYVLLSNIYA 584
Query: 531 AAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRN 590
AG+WD+VS +R++M+ G +K+PG SSIE G++HEF+VGD SHP +I++KL E+
Sbjct: 585 KAGKWDRVSGLRKLMRDVGLKKEPGCSSIEVDGIVHEFLVGDNSHPSAKKIYAKLDEIVA 644
Query: 591 KLKAAGHVPDTTQVLLCIEDQKEKEAELENHSERLAIAFGLINVKSRSPIRIVKNLRVCN 650
+L+ G+VP+ + +L +E++ KE L HSE+LAIAFGLI+ PIRIVKNLRVC
Sbjct: 645 RLETIGYVPNKSHLLQLVEEEDVKEQALFLHSEKLAIAFGLISTGQSQPIRIVKNLRVCG 704
Query: 651 DCHSVTKLLSGIYNREIIVRDNSRFHHFKNGSCSCKDFW 689
DCHSV KL+S +Y+REI++RD RFHHF+ G CSC D+W
Sbjct: 705 DCHSVAKLVSKLYDREILLRDRYRFHHFREGHCSCMDYW 743
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225450565|ref|XP_002281942.1| PREDICTED: pentatricopeptide repeat-containing protein At5g48910 isoform 1 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 581 bits (1497), Expect = e-163, Method: Compositional matrix adjust.
Identities = 298/693 (43%), Positives = 420/693 (60%), Gaps = 51/693 (7%)
Query: 2 QTQTLQHSSPIHALQQHLPSRLHWNILKFSSTHKETQQLHALSVKTNLIYHSGISSRLLS 61
+T L H + +H L + LH +Q HAL ++T + S I+ L+
Sbjct: 26 ETSKLSHKAILHLLNTQCTTSLH-----------HLKQAHALILRTGHLQDSYIAGSLVK 74
Query: 62 LYVDPHIN---NLHYARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFL 118
Y + N + + +FD ++ P++ L+N +IK + N +A+ L+ +++
Sbjct: 75 SYANVSTNRYLSFESSLRVFD-FVRKPNVFLWNCMIKVCIENNEPFKAILLYYEMMVAHF 133
Query: 119 LPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRR 178
P+ +T P V+K + G + EG Q+H + K G G D +LSS + MYA FG + RR
Sbjct: 134 RPNKYTYPAVLKACSDAGVVAEGVQVHAHLVKHGLGGDGHILSSAIRMYASFGRLVEARR 193
Query: 179 VFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDRDLFSWTCLVDGFSKCGKVEIA 238
+ D K GEV D W ++DG+ + G+VE A
Sbjct: 194 ILDD-----------------KGGEV-------------DAVCWNAMIDGYLRFGEVEAA 223
Query: 239 REIFYRMPNRNLVS-WNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRF 297
RE+F MP+R+++S WNAMI+G+ + G V+ A E FD+M+ RD I+W++MI GY G F
Sbjct: 224 RELFEGMPDRSMISTWNAMISGFSRCGMVEVAREFFDEMKERDEISWSAMIDGYIQEGCF 283
Query: 298 MEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLL 357
MEALE+ M + P L S LSA A L L++GRW+H+Y +N +DGVLGT L
Sbjct: 284 MEALEIFHQMQKEKIRPRKFVLPSVLSACANLGALDQGRWIHTYAKRNSIQLDGVLGTSL 343
Query: 358 IQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTA 417
+ MY+KCG I+ A VF +S K+V W AMI GL MHG A A+DLF+KM + P
Sbjct: 344 VDMYAKCGRIDLAWEVFEKMSNKEVSSWNAMIGGLAMHGRAEDAIDLFSKM---DINPNE 400
Query: 418 ITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIE 477
ITF+GVLNAC+H GLV G FN M +YG+EP IEHYGC+VD+L R G L EA+ +
Sbjct: 401 ITFVGVLNACAHGGLVQKGLTIFNSMRKEYGVEPQIEHYGCIVDLLGRAGLLTEAEKVVS 460
Query: 478 SMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDK 537
S+P P +W +LL R HGN ++GE L+++ P G Y +LSNIYA AG+W++
Sbjct: 461 SIPTEPTPAVWGALLGACRKHGNVELGERVGKILLELEPQNSGRYTLLSNIYAKAGRWEE 520
Query: 538 VSEVREMMKKRGFRKDPGSSSIE-HRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAG 596
V EVR++MK+RG + PG+S I+ RG +H+F++GD SHPQ +I+ L +++ +L+ G
Sbjct: 521 VGEVRKLMKERGIKTTPGTSIIDLGRGEVHKFIIGDGSHPQVKDIYQMLDKVKERLQMEG 580
Query: 597 HVPDTTQVLLCIEDQKEKEAELENHSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVT 656
+ PD +QVL I D++EKE + HSE+LAI FGLIN + IRIVKNLRVC DCHS T
Sbjct: 581 YEPDPSQVLFDI-DEEEKETAVWQHSEKLAIGFGLINTSPGTTIRIVKNLRVCEDCHSAT 639
Query: 657 KLLSGIYNREIIVRDNSRFHHFKNGSCSCKDFW 689
KL+S +YNREIIVRD R+HHF+NG+CSCKDFW
Sbjct: 640 KLISQVYNREIIVRDRIRYHHFRNGACSCKDFW 672
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225456890|ref|XP_002277458.1| PREDICTED: pentatricopeptide repeat-containing protein At1g08070 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 578 bits (1491), Expect = e-162, Method: Compositional matrix adjust.
Identities = 290/671 (43%), Positives = 423/671 (63%), Gaps = 10/671 (1%)
Query: 27 ILKFSSTHKETQQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPS 86
IL+ T ++ ++HA +KT L+ ++ LL ++ YA SIF R + P
Sbjct: 30 ILEQCKTIRDLNEIHAHLIKTRLLLKPKVAENLLESAAILLPTSMDYAVSIF-RQIDEPD 88
Query: 87 LVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHG 146
YN++I+ + Q HEA+ LF ++ + + PD FT PC++K +RL A+ EG+QIH
Sbjct: 89 SPAYNIMIRGFTLKQSPHEAILLFKEMHENSVQPDEFTFPCILKVCSRLQALSEGEQIHA 148
Query: 147 LVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEV 206
L+ K GFG FV ++L+ MYA GE+++ RRVFD M ++++ +WN + GY K G E
Sbjct: 149 LIMKCGFGSHGFVKNTLIHMYANCGEVEVARRVFDEMSERNVRTWNSMFAGYTKSGNWEE 208
Query: 207 AMKLFDEMPDRDL-FSWTCLVDGFSKCGKVE-------IAREIFYRMPNRNLVSWNAMIN 258
+KLF EM + D+ F LV + CG++ I R + + N ++++
Sbjct: 209 VVKLFHEMLELDIRFDEVTLVSVLTACGRLADLELGEWINRYVEEKGLKGNPTLITSLVD 268
Query: 259 GYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDAT 318
Y K G VD+A LFD M+ RD++ W++MI+GY R EAL+L M ++ PN+ T
Sbjct: 269 MYAKCGQVDTARRLFDQMDRRDVVAWSAMISGYSQASRCREALDLFHEMQKANIDPNEIT 328
Query: 319 LVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAIS 378
+VS LS+ A L L G+W+H +I K + LGT L+ Y+KCGS+ES++ VF +
Sbjct: 329 MVSILSSCAVLGALETGKWVHFFIKKKRMKLTVTLGTALMDFYAKCGSVESSIEVFGKMP 388
Query: 379 KKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRR 438
K V WT +I GL +G +AL+ F M ++P +TFIGVL+ACSHAGLV++GR
Sbjct: 389 VKNVLSWTVLIQGLASNGQGKKALEYFYLMLEKNVEPNDVTFIGVLSACSHAGLVDEGRD 448
Query: 439 YFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNH 498
F M D+GIEP IEHYGC+VDIL R G +EEA I++MP++PN VIW +LL+ + H
Sbjct: 449 LFVSMSRDFGIEPRIEHYGCMVDILGRAGLIEEAFQFIKNMPIQPNAVIWRTLLASCKVH 508
Query: 499 GNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSS 558
N +IGE + LI + P G Y++LSNIYA+ G+W+ +VR MK++G +K PG S
Sbjct: 509 KNVEIGEESLKQLIILEPTHSGDYILLSNIYASVGRWEDALKVRGEMKEKGIKKTPGCSL 568
Query: 559 IEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAEL 618
IE GV+HEF D H Q++EI++ + +M ++K+AG+VP+T + L E+ +KE+ +
Sbjct: 569 IELDGVIHEFFAEDNVHSQSEEIYNAIEDMMKQIKSAGYVPNTAEARLDAEED-DKESSV 627
Query: 619 ENHSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHF 678
+HSE+LAIAFGLI + IRI KNLRVC DCH+ TKL+S ++NREI+VRD +RFHHF
Sbjct: 628 SHHSEKLAIAFGLIKSPPGTTIRITKNLRVCTDCHNATKLVSKVFNREIVVRDRTRFHHF 687
Query: 679 KNGSCSCKDFW 689
K GSCSC D+W
Sbjct: 688 KEGSCSCNDYW 698
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297849104|ref|XP_002892433.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297338275|gb|EFH68692.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 578 bits (1491), Expect = e-162, Method: Compositional matrix adjust.
Identities = 302/721 (41%), Positives = 445/721 (61%), Gaps = 48/721 (6%)
Query: 11 PIHALQQHLPSRLHWNILKFSSTHKETQQLHALSVKTNLIYHSGISSRLLSLYV-DPHIN 69
P +L+ H PS ++L T + + +HA +KT L + S+LL L V PH +
Sbjct: 27 PYDSLRNH-PS---LSLLHNCKTLQSLRLIHAQMIKTGLHNTNYALSKLLELCVISPHFD 82
Query: 70 NLHYARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVI 129
L YA S+F+ I Q P+L+++N + + + + AL L+ ++ LLP+++T P ++
Sbjct: 83 GLPYAISVFETI-QEPNLLIWNTMFRGHALSSDPVSALKLYVCMISLGLLPNSYTFPFLL 141
Query: 130 KGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLV 189
K A+ A KEG+QIHG V KLG+ D FV +SL+S+Y + G ++ R+VFD +D+V
Sbjct: 142 KSCAKSKAFKEGQQIHGHVLKLGYDLDLFVHTSLISVYVQNGRLEDARKVFDRSPHRDVV 201
Query: 190 SWNCLIDGYVKKGEVEVAMKLFDEMPDRDLFSWTCLVDGFSKCGKVEIAREIFYRM---- 245
S+ LI GY +G +E A KLFDE+P +D+ SW ++ G+++ G + A E+F M
Sbjct: 202 SYTALIKGYASRGYIESAQKLFDEIPVKDVVSWNAMISGYAETGNYKEALELFKEMMKTN 261
Query: 246 --PN--------------------RNLVSW-------------NAMINGYMKAGDVDSAC 270
P+ R + SW N++++ Y K G++++AC
Sbjct: 262 IRPDESTMVTVVSACAQSGSIELGRQVHSWIDDHGFGSNLKIVNSLMDLYSKCGELETAC 321
Query: 271 ELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLA 330
LF+ + +D+I+WN++I GY + EAL L + ML PND T++S L A A L
Sbjct: 322 GLFEGLLYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGERPNDVTMLSILPACAHLG 381
Query: 331 VLNKGRWMHSYIVK--NGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAM 388
++ GRW+H YI K L T LI MY+KCG IE+A VF +I K + W AM
Sbjct: 382 AIDIGRWIHVYIDKRLKSATNASSLRTSLIDMYAKCGDIEAAHQVFNSILHKSLSSWNAM 441
Query: 389 IVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYG 448
I G MHG A A D+F++M ++G++P ITF+G+L+ACS +G+++ GR F M DY
Sbjct: 442 IFGFAMHGRADAAFDIFSRMRKIGIEPDDITFVGLLSACSRSGMLDLGRHIFRTMTQDYK 501
Query: 449 IEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAA 508
I P +EHYGC++D+L +G +EA+ I +M M P+ VIW SLL + GN ++GE A
Sbjct: 502 ITPKLEHYGCMIDLLGHSGLFKEAEEMINNMEMEPDGVIWCSLLKACKIRGNVELGESFA 561
Query: 509 NNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLHEF 568
NLIK+ P+ GCYV+LSNIYA AG+W++V+++R ++ +G +K PG SSIE V+HEF
Sbjct: 562 QNLIKIEPENPGCYVLLSNIYATAGRWNEVAKIRALLNDKGMKKVPGCSSIEIDSVVHEF 621
Query: 569 VVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELENHSERLAIA 628
++GDK HP+ EI+ L EM L+ AG VPDT++VL +E++ KE L +HSE+LAIA
Sbjct: 622 IIGDKFHPRNREIYGMLEEMEVLLEKAGFVPDTSEVLQEMEEE-WKEGALRHHSEKLAIA 680
Query: 629 FGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGSCSCKDF 688
FGLI+ K + + IVKNLRVC +CH TKL+S IY REII RD +RFHHF++G CSC D+
Sbjct: 681 FGLISTKPGTKLTIVKNLRVCRNCHEATKLISKIYKREIIARDRTRFHHFRDGVCSCNDY 740
Query: 689 W 689
W
Sbjct: 741 W 741
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147775281|emb|CAN61593.1| hypothetical protein VITISV_030555 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 578 bits (1491), Expect = e-162, Method: Compositional matrix adjust.
Identities = 298/693 (43%), Positives = 420/693 (60%), Gaps = 51/693 (7%)
Query: 2 QTQTLQHSSPIHALQQHLPSRLHWNILKFSSTHKETQQLHALSVKTNLIYHSGISSRLLS 61
+T L H + +H L + LH +Q HAL ++T + S I+ L+
Sbjct: 27 ETSKLSHKAILHLLNTQCTTSLH-----------HLKQAHALILRTGHLQDSYIAGSLVK 75
Query: 62 LYVDPHIN---NLHYARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFL 118
Y + N + + +FD ++ P++ L+N +IK + N +A+ L+ +++
Sbjct: 76 SYANVSTNRYLSFESSLRVFD-FVRKPNVFLWNCMIKVCIENNEPFKAILLYYEMVVAHS 134
Query: 119 LPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRR 178
P+ +T P V+K + G + EG Q+H + K G G D +LSS + MYA FG + RR
Sbjct: 135 RPNKYTYPAVLKACSDSGVVAEGVQVHAHLVKHGLGGDGHILSSAIRMYASFGRLVEARR 194
Query: 179 VFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDRDLFSWTCLVDGFSKCGKVEIA 238
+ D K GEV D W ++DG+ + G+VE A
Sbjct: 195 ILDD-----------------KGGEV-------------DAVCWNAMIDGYLRFGEVEAA 224
Query: 239 REIFYRMPNRNLVS-WNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRF 297
RE+F MP+R+++S WNAMI+G+ + G V+ A E FD+M+ RD I+W++MI GY G F
Sbjct: 225 RELFEGMPDRSMISTWNAMISGFSRCGMVEVAREFFDEMKERDEISWSAMIDGYIQEGCF 284
Query: 298 MEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLL 357
MEALE+ M + P L S LSA A L L++GRW+H+Y +N +DGVLGT L
Sbjct: 285 MEALEIFHQMQKEKIRPRKFVLPSVLSACANLGALDQGRWIHTYAKRNSIQLDGVLGTSL 344
Query: 358 IQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTA 417
+ MY+KCG I+ A VF +S K+V W AMI GL MHG A A+DLF+KM + P
Sbjct: 345 VDMYAKCGRIDLAWEVFEKMSNKEVSSWNAMIGGLAMHGRAEDAIDLFSKM---DIYPNE 401
Query: 418 ITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIE 477
ITF+GVLNAC+H GLV G FN M +YG+EP IEHYGC+VD+L R G L EA+ +
Sbjct: 402 ITFVGVLNACAHGGLVQKGLTIFNSMRKEYGVEPQIEHYGCIVDLLGRAGLLTEAEKVVS 461
Query: 478 SMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDK 537
S+P P +W +LL R HGN ++GE L+++ P G Y +LSNIYA AG+W++
Sbjct: 462 SIPTEPTPAVWGALLGACRKHGNVELGERVGKILLELEPQNSGRYTLLSNIYAKAGRWEE 521
Query: 538 VSEVREMMKKRGFRKDPGSSSIE-HRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAG 596
V EVR++MK+RG + PG+S I+ RG +H+F++GD SHPQ +I+ L +++ +L+ G
Sbjct: 522 VGEVRKLMKERGIKTTPGTSIIDLGRGEVHKFIIGDGSHPQVKDIYQMLDKVKERLQMEG 581
Query: 597 HVPDTTQVLLCIEDQKEKEAELENHSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVT 656
+ PD +QVL I D++EKE + HSE+LAI FGLIN + IRIVKNLRVC DCHS T
Sbjct: 582 YEPDPSQVLFDI-DEEEKETAVWQHSEKLAIGFGLINTSPGTTIRIVKNLRVCEDCHSAT 640
Query: 657 KLLSGIYNREIIVRDNSRFHHFKNGSCSCKDFW 689
KL+S +YNREIIVRD R+HHF+NG+CSCKDFW
Sbjct: 641 KLISQVYNREIIVRDRIRYHHFRNGACSCKDFW 673
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225423499|ref|XP_002274432.1| PREDICTED: pentatricopeptide repeat-containing protein At1g08070-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 578 bits (1489), Expect = e-162, Method: Compositional matrix adjust.
Identities = 306/721 (42%), Positives = 436/721 (60%), Gaps = 45/721 (6%)
Query: 9 SSPIHALQQHLPSRLHWNILKFSSTHKETQQLHALSVKTNLIYHSGISSRLLSLYVDPHI 68
S P + L Q+ PS +L + + +Q+H+ +KT L S+L+
Sbjct: 23 SDPPYKLLQNHPS---LTLLSTCKSFQNLKQIHSQIIKTGLHNTQFALSKLIEFCAISPF 79
Query: 69 NNLHYARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCV 128
NL YA +F+ I Q P+ ++N +I+ + A+ + +L + P+++T P +
Sbjct: 80 GNLSYALLLFESIEQ-PNQFIWNTMIRGNSLSSSPVGAIDFYVRMLLCGVEPNSYTFPFL 138
Query: 129 IKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDL 188
+K A++GA +EGKQIHG V KLG D FV +SL++MYA+ GE+ VF +D
Sbjct: 139 LKSCAKVGATQEGKQIHGHVLKLGLESDPFVHTSLINMYAQNGELGYAELVFSKSSLRDA 198
Query: 189 VSWNCLIDGYVKKGEVEVAMKLFDEMPDRDLFSWTCLVDGFSKCGKVEIAREIFYRMPNR 248
VS+ LI GY +G ++ A +LF+E+P RD SW ++ G+++ G+ E A F M
Sbjct: 199 VSFTALITGYTLRGCLDDARRLFEEIPVRDAVSWNAMIAGYAQSGRFEEALAFFQEMKRA 258
Query: 249 NLV--------------------------SW-------------NAMINGYMKAGDVDSA 269
N+ SW NA+I+ Y K GD+D A
Sbjct: 259 NVAPNESTMVTVLSACAQSGSLELGNWVRSWIEDHGLGSNLRLVNALIDMYSKCGDLDKA 318
Query: 270 CELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGL 329
+LF+ + +D+I+WN MI GY + EAL L M +V PND T VS L A A L
Sbjct: 319 RDLFEGICEKDIISWNVMIGGYSHMNSYKEALALFRKMQQSNVEPNDVTFVSILPACAYL 378
Query: 330 AVLNKGRWMHSYIVKNGF-VVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAM 388
L+ G+W+H+YI K + + L T LI MY+KCG+IE+A VF + K +G W AM
Sbjct: 379 GALDLGKWIHAYIDKKFLGLTNTSLWTSLIDMYAKCGNIEAAKQVFAGMKPKSLGSWNAM 438
Query: 389 IVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYG 448
I GL MHG A AL+LF +M G +P ITF+GVL+ACSHAGLV GR+ F+ M+ DY
Sbjct: 439 ISGLAMHGHANMALELFRQMRDEGFEPDDITFVGVLSACSHAGLVELGRQCFSSMVEDYD 498
Query: 449 IEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAA 508
I P ++HYGC++D+L R G +EA++ +++M M+P+ IW SLL R HGN ++GE+AA
Sbjct: 499 ISPKLQHYGCMIDLLGRAGLFDEAEALMKNMEMKPDGAIWGSLLGACRVHGNVELGEFAA 558
Query: 509 NNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLHEF 568
+L ++ P+ G YV+LSNIYA AG+WD V+ +R + +G +K PG SSIE V+HEF
Sbjct: 559 KHLFELEPENPGAYVLLSNIYATAGRWDDVARIRTKLNDKGMKKVPGCSSIEVDSVVHEF 618
Query: 569 VVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELENHSERLAIA 628
+VGDK H Q+ +I+ L E+ L+ AGHVPDT++VL + D++ KE L +HSE+LAIA
Sbjct: 619 LVGDKVHEQSQDIYKMLDEIDQLLEKAGHVPDTSEVLYDM-DEEWKEGSLSHHSEKLAIA 677
Query: 629 FGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGSCSCKDF 688
FGLI+ K + IRIVKNLRVC +CHS KL+S I+NREII RD +RFHHFK+GSCSC D+
Sbjct: 678 FGLISTKPETTIRIVKNLRVCGNCHSAIKLISKIFNREIIARDRNRFHHFKDGSCSCMDY 737
Query: 689 W 689
W
Sbjct: 738 W 738
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 689 | ||||||
| TAIR|locus:2140235 | 781 | AT4G02750 [Arabidopsis thalian | 0.879 | 0.775 | 0.400 | 8.9e-125 | |
| TAIR|locus:2148101 | 850 | AT5G16860 "AT5G16860" [Arabido | 0.640 | 0.518 | 0.417 | 2.7e-124 | |
| TAIR|locus:2205200 | 741 | OTP82 "AT1G08070" [Arabidopsis | 0.763 | 0.709 | 0.438 | 4.4e-123 | |
| TAIR|locus:2198546 | 760 | AT1G20230 "AT1G20230" [Arabido | 0.721 | 0.653 | 0.375 | 7.5e-120 | |
| TAIR|locus:2055919 | 786 | AT2G22070 "AT2G22070" [Arabido | 0.673 | 0.590 | 0.418 | 1.2e-119 | |
| TAIR|locus:2154389 | 646 | LPA66 "LOW PSII ACCUMULATION 6 | 0.683 | 0.729 | 0.477 | 1.4e-119 | |
| TAIR|locus:2118964 | 823 | EMB2758 "embryo defective 2758 | 0.952 | 0.797 | 0.381 | 7.9e-117 | |
| TAIR|locus:2077878 | 685 | AT3G08820 "AT3G08820" [Arabido | 0.956 | 0.962 | 0.368 | 5.6e-116 | |
| TAIR|locus:2081635 | 573 | AT3G62890 [Arabidopsis thalian | 0.686 | 0.825 | 0.449 | 6.4e-115 | |
| TAIR|locus:2154855 | 620 | AT5G66520 "AT5G66520" [Arabido | 0.687 | 0.764 | 0.453 | 1e-114 |
| TAIR|locus:2140235 AT4G02750 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1226 (436.6 bits), Expect = 8.9e-125, P = 8.9e-125
Identities = 247/616 (40%), Positives = 368/616 (59%)
Query: 74 ARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAA 133
ARS+FDR+ + V +N L+ YV N + EA LF + L+ N C++ G
Sbjct: 176 ARSVFDRMPEKND-VSWNALLSAYVQNSKMEEACMLFKSRENWALVSWN----CLLGGFV 230
Query: 134 RLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNC 193
+ I E +Q F D +++++ YA+ G+ID R++FD +D+ +W
Sbjct: 231 KKKKIVEARQF----FDSMNVRDVVSWNTIITGYAQSGKIDEARQLFDESPVQDVFTWTA 286
Query: 194 LIDGYVKKGEVEVAMKLFDEMPDRDLFSWTCLVDGFSKCGKVEIAREIFYRMPNRNLVSW 253
++ GY++ VE A +LFD+MP+R+ SW ++ G+ + ++E+A+E+F MP RN+ +W
Sbjct: 287 MVSGYIQNRMVEEARELFDKMPERNEVSWNAMLAGYVQGERMEMAKELFDVMPCRNVSTW 346
Query: 254 NAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVL 313
N MI GY + G + A LFD M RD ++W +MIAGY +G EAL L M
Sbjct: 347 NTMITGYAQCGKISEAKNLFDKMPKRDPVSWAAMIAGYSQSGHSFEALRLFVQMEREGGR 406
Query: 314 PNDATXXXXXXXXXXXXXXNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTV 373
N ++ G+ +H +VK G+ +G L+ MY KCGSIE A +
Sbjct: 407 LNRSSFSSALSTCADVVALELGKQLHGRLVKGGYETGCFVGNALLLMYCKCGSIEEANDL 466
Query: 374 FRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLV 433
F+ ++ K + W MI G HG AL F M R G+KP T + VL+ACSH GLV
Sbjct: 467 FKEMAGKDIVSWNTMIAGYSRHGFGEVALRFFESMKREGLKPDDATMVAVLSACSHTGLV 526
Query: 434 NDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLS 493
+ GR+YF M DYG+ P +HY C+VD+L R G LE+A + +++MP P+ IW +LL
Sbjct: 527 DKGRQYFYTMTQDYGVMPNSQHYACMVDLLGRAGLLEDAHNLMKNMPFEPDAAIWGTLLG 586
Query: 494 GARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKD 553
+R HGN ++ E AA+ + + P+ G YV+LSN+YA++G+W V ++R M+ +G +K
Sbjct: 587 ASRVHGNTELAETAADKIFAMEPENSGMYVLLSNLYASSGRWGDVGKLRVRMRDKGVKKV 646
Query: 554 PGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKE 613
PG S IE + H F VGD+ HP+ DEI + L E+ ++K AG+V T+ VL +E++ E
Sbjct: 647 PGYSWIEIQNKTHTFSVGDEFHPEKDEIFAFLEELDLRMKKAGYVSKTSVVLHDVEEE-E 705
Query: 614 KEAELENHSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNS 673
KE + HSERLA+A+G++ V S PIR++KNLRVC DCH+ K ++ I R II+RDN+
Sbjct: 706 KERMVRYHSERLAVAYGIMRVSSGRPIRVIKNLRVCEDCHNAIKYMARITGRLIILRDNN 765
Query: 674 RFHHFKNGSCSCKDFW 689
RFHHFK+GSCSC D+W
Sbjct: 766 RFHHFKDGSCSCGDYW 781
|
|
| TAIR|locus:2148101 AT5G16860 "AT5G16860" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 916 (327.5 bits), Expect = 2.7e-124, Sum P(2) = 2.7e-124
Identities = 187/448 (41%), Positives = 267/448 (59%)
Query: 247 NRNLVSWNAMINGYMKAGDVDSACELFDDM--EIRDLITWNSMIAGYELNGRFMEALELL 304
+ N+V N +I+ Y K VD+A +FD + + RD++TW MI GY +G +ALELL
Sbjct: 405 DENMVI-NQLIDMYAKCKKVDTARAMFDSLSPKERDVVTWTVMIGGYSQHGDANKALELL 463
Query: 305 ETMLIGD--VLPNDATXXXXXXXXXXXXXXNKGRWMHSYIVKNGF-VVDGVLGTLLIQMY 361
M D PN T G+ +H+Y ++N V + LI MY
Sbjct: 464 SEMFEEDCQTRPNAFTISCALVACASLAALRIGKQIHAYALRNQQNAVPLFVSNCLIDMY 523
Query: 362 SKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFI 421
+KCGSI A VF + K WT+++ G GMHG +AL +F++M R+G K +T +
Sbjct: 524 AKCGSISDARLVFDNMMAKNEVTWTSLMTGYGMHGYGEEALGIFDEMRRIGFKLDGVTLL 583
Query: 422 GVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPM 481
VL ACSH+G+++ G YFN M +G+ P EHY CLVD+L R G L A IE MPM
Sbjct: 584 VVLYACSHSGMIDQGMEYFNRMKTVFGVSPGPEHYACLVDLLGRAGRLNAALRLIEEMPM 643
Query: 482 RPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEV 541
P V+W++ LS R HG ++GEYAA + ++A + G Y +LSN+YA AG+W V+ +
Sbjct: 644 EPPPVVWVAFLSCCRIHGKVELGEYAAEKITELASNHDGSYTLLSNLYANAGRWKDVTRI 703
Query: 542 REMMKKRGFRKDPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDT 601
R +M+ +G +K PG S +E F VGDK+HP EI+ L + ++K G+VP+T
Sbjct: 704 RSLMRHKGVKKRPGCSWVEGIKGTTTFFVGDKTHPHAKEIYQVLLDHMQRIKDIGYVPET 763
Query: 602 TQVLLCIEDQKEKEAELENHSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSG 661
L ++D+ EK+ L HSE+LA+A+G++ + IRI KNLRVC DCH+ +S
Sbjct: 764 GFALHDVDDE-EKDDLLFEHSEKLALAYGILTTPQGAAIRITKNLRVCGDCHTAFTYMSR 822
Query: 662 IYNREIIVRDNSRFHHFKNGSCSCKDFW 689
I + +II+RD+SRFHHFKNGSCSCK +W
Sbjct: 823 IIDHDIILRDSSRFHHFKNGSCSCKGYW 850
|
|
| TAIR|locus:2205200 OTP82 "AT1G08070" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1210 (431.0 bits), Expect = 4.4e-123, P = 4.4e-123
Identities = 237/541 (43%), Positives = 344/541 (63%)
Query: 161 SSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEM------ 214
++L+ YA G I+ +++FD + KD+VSWN +I GY + G + A++LF +M
Sbjct: 204 TALIKGYASRGYIENAQKLFDEIPVKDVVSWNAMISGYAETGNYKEALELFKDMMKTNVR 263
Query: 215 PDRDLFSWTCLVDGFSKCGKVEIAREIFYRMPNR----NLVSWNAMINGYMKAGDVDSAC 270
PD + +V ++ G +E+ R++ + + NL NA+I+ Y K G++++AC
Sbjct: 264 PDES--TMVTVVSACAQSGSIELGRQVHLWIDDHGFGSNLKIVNALIDLYSKCGELETAC 321
Query: 271 ELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATXXXXXXXXXXXX 330
LF+ + +D+I+WN++I GY + EAL L + ML PND T
Sbjct: 322 GLFERLPYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHLG 381
Query: 331 XXNKGRWMHSYIVKN--GFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAM 388
+ GRW+H YI K G L T LI MY+KCG IE+A VF +I K + W AM
Sbjct: 382 AIDIGRWIHVYIDKRLKGVTNASSLRTSLIDMYAKCGDIEAAHQVFNSILHKSLSSWNAM 441
Query: 389 IVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYG 448
I G MHG A + DLF++M ++G++P ITF+G+L+ACSH+G+++ GR F M DY
Sbjct: 442 IFGFAMHGRADASFDLFSRMRKIGIQPDDITFVGLLSACSHSGMLDLGRHIFRTMTQDYK 501
Query: 449 IEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAA 508
+ P +EHYGC++D+L +G +EA+ I M M P+ VIW SLL + HGN ++GE A
Sbjct: 502 MTPKLEHYGCMIDLLGHSGLFKEAEEMINMMEMEPDGVIWCSLLKACKMHGNVELGESFA 561
Query: 509 NNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLHEF 568
NLIK+ P+ G YV+LSNIYA+AG+W++V++ R ++ +G +K PG SSIE V+HEF
Sbjct: 562 ENLIKIEPENPGSYVLLSNIYASAGRWNEVAKTRALLNDKGMKKVPGCSSIEIDSVVHEF 621
Query: 569 VVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELENHSERLAIA 628
++GDK HP+ EI+ L EM L+ AG VPDT++VL +E++ KE L +HSE+LAIA
Sbjct: 622 IIGDKFHPRNREIYGMLEEMEVLLEKAGFVPDTSEVLQEMEEEW-KEGALRHHSEKLAIA 680
Query: 629 FGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGSCSCKDF 688
FGLI+ K + + IVKNLRVC +CH TKL+S IY REII RD +RFHHF++G CSC D+
Sbjct: 681 FGLISTKPGTKLTIVKNLRVCRNCHEATKLISKIYKREIIARDRTRFHHFRDGVCSCNDY 740
Query: 689 W 689
W
Sbjct: 741 W 741
|
|
| TAIR|locus:2198546 AT1G20230 "AT1G20230" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 949 (339.1 bits), Expect = 7.5e-120, Sum P(2) = 7.5e-120
Identities = 194/517 (37%), Positives = 296/517 (57%)
Query: 179 VFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDRDLFSWTCLVDGFSKCGKVEIA 238
V ++ D ++++ LI GYV K + + D+ + S ++D + K G V
Sbjct: 258 VLPSVGDSEMLNMGRLIHGYVIKQGL---------LKDKCVIS--AMIDMYGKSGHVYGI 306
Query: 239 REIFYRMPNRNLVSWNAMINGYMKAGDVDSACELFD-----DMEIRDLITWNSMIAGYEL 293
+F + NA I G + G VD A E+F+ ME+ ++++W S+IAG
Sbjct: 307 ISLFNQFEMMEAGVCNAYITGLSRNGLVDKALEMFELFKEQTMEL-NVVSWTSIIAGCAQ 365
Query: 294 NGRFMEALELLETMLIGDVLPNDATXXXXXXXXXXXXXXNKGRWMHSYIVKNGFVVDGV- 352
NG+ +EALEL M + V PN T GR H + V+ ++D V
Sbjct: 366 NGKDIEALELFREMQVAGVKPNHVTIPSMLPACGNIAALGHGRSTHGFAVRV-HLLDNVH 424
Query: 353 LGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMG 412
+G+ LI MY+KCG I + VF + K + W +++ G MHG A + + +F + R
Sbjct: 425 VGSALIDMYAKCGRINLSQIVFNMMPTKNLVCWNSLMNGFSMHGKAKEVMSIFESLMRTR 484
Query: 413 MKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEA 472
+KP I+F +L+AC GL ++G +YF MM +YGI+P +EHY C+V++L R G L+EA
Sbjct: 485 LKPDFISFTSLLSACGQVGLTDEGWKYFKMMSEEYGIKPRLEHYSCMVNLLGRAGKLQEA 544
Query: 473 KSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAA 532
I+ MP P+ +W +LL+ R N D+ E AA L + P+ G YV+LSNIYAA
Sbjct: 545 YDLIKEMPFEPDSCVWGALLNSCRLQNNVDLAEIAAEKLFHLEPENPGTYVLLSNIYAAK 604
Query: 533 GQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKL 592
G W +V +R M+ G +K+PG S I+ + ++ + GDKSHPQ D+I K+ E+ ++
Sbjct: 605 GMWTEVDSIRNKMESLGLKKNPGCSWIQVKNRVYTLLAGDKSHPQIDQITEKMDEISKEM 664
Query: 593 KAAGHVPDTTQVLLCIEDQKEKEAELENHSERLAIAFGLINVKSRSPIRIVKNLRVCNDC 652
+ +GH P+ L +E+Q E+E L HSE+LA+ FGL+N +P++++KNLR+C DC
Sbjct: 665 RKSGHRPNLDFALHDVEEQ-EQEQMLWGHSEKLAVVFGLLNTPDGTPLQVIKNLRICGDC 723
Query: 653 HSVTKLLSGIYNREIIVRDNSRFHHFKNGSCSCKDFW 689
H+V K +S REI +RD +RFHHFK+G CSC DFW
Sbjct: 724 HAVIKFISSYAGREIFIRDTNRFHHFKDGICSCGDFW 760
|
|
| TAIR|locus:2055919 AT2G22070 "AT2G22070" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1027 (366.6 bits), Expect = 1.2e-119, Sum P(2) = 1.2e-119
Identities = 196/468 (41%), Positives = 298/468 (63%)
Query: 225 LVDGFSKCGKVEIAREIFYRMPNRNLV--SWNAMINGYMKAGDVDSACELFDDMEIRDLI 282
L+ +S+CG VE AR + + ++L + A+++GY+K GD++ A +F ++ RD++
Sbjct: 320 LISMYSRCGGVETARRLIEQRGTKDLKIEGFTALLDGYIKLGDMNQAKNIFVSLKDRDVV 379
Query: 283 TWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATXXXXXXXXXXXXXXNKGRWMHSYI 342
W +MI GYE +G + EA+ L +M+ G PN T + G+ +H
Sbjct: 380 AWTAMIVGYEQHGSYGEAINLFRSMVGGGQRPNSYTLAAMLSVASSLASLSHGKQIHGSA 439
Query: 343 VKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAIS-KKKVGHWTAMIVGLGMHGMATQA 401
VK+G + + LI MY+K G+I SA F I ++ WT+MI+ L HG A +A
Sbjct: 440 VKSGEIYSVSVSNALITMYAKAGNITSASRAFDLIRCERDTVSWTSMIIALAQHGHAEEA 499
Query: 402 LDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVD 461
L+LF M G++P IT++GV +AC+HAGLVN GR+YF+MM + I PT+ HY C+VD
Sbjct: 500 LELFETMLMEGLRPDHITYVGVFSACTHAGLVNQGRQYFDMMKDVDKIIPTLSHYACMVD 559
Query: 462 ILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGC 521
+ R G L+EA+ IE MP+ P+ V W SLLS R H N D+G+ AA L+ + P+ G
Sbjct: 560 LFGRAGLLQEAQEFIEKMPIEPDVVTWGSLLSACRVHKNIDLGKVAAERLLLLEPENSGA 619
Query: 522 YVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLHEFVVGDKSHPQTDEI 581
Y L+N+Y+A G+W++ +++R+ MK +K+ G S IE + +H F V D +HP+ +EI
Sbjct: 620 YSALANLYSACGKWEEAAKIRKSMKDGRVKKEQGFSWIEVKHKVHVFGVEDGTHPEKNEI 679
Query: 582 HSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELENHSERLAIAFGLINVKSRSPIR 641
+ + ++ +++K G+VPDT VL +E++ KE L +HSE+LAIAFGLI+ ++ +R
Sbjct: 680 YMTMKKIWDEIKKMGYVPDTASVLHDLEEEV-KEQILRHHSEKLAIAFGLISTPDKTTLR 738
Query: 642 IVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGSCSCKDFW 689
I+KNLRVCNDCH+ K +S + REIIVRD +RFHHFK+G CSC+D+W
Sbjct: 739 IMKNLRVCNDCHTAIKFISKLVGREIIVRDTTRFHHFKDGFCSCRDYW 786
|
|
| TAIR|locus:2154389 LPA66 "LOW PSII ACCUMULATION 66" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1177 (419.4 bits), Expect = 1.4e-119, P = 1.4e-119
Identities = 232/486 (47%), Positives = 317/486 (65%)
Query: 218 DLFSWTCLVDGFSKCGKVEIAREIFYR---------MPNRN-----LVSWNAMINGYMKA 263
D F + LV + CG ++ AR +FY+ M +R +V WN MI+GYM+
Sbjct: 162 DEFVMSNLVRMYVMCGFMKDARVLFYKNIIEKDMVVMTDRRKRDGEIVLWNVMIDGYMRL 221
Query: 264 GDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATXXXXX 323
GD +A LFD M R +++WN+MI+GY LNG F +A+E+ M GD+ PN T
Sbjct: 222 GDCKAARMLFDKMRQRSVVSWNTMISGYSLNGFFKDAVEVFREMKKGDIRPNYVTLVSVL 281
Query: 324 XXXXXXXXXNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVG 383
G W+H Y +G +D VLG+ LI MYSKCG IE A+ VF + ++ V
Sbjct: 282 PAISRLGSLELGEWLHLYAEDSGIRIDDVLGSALIDMYSKCGIIEKAIHVFERLPRENVI 341
Query: 384 HWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMM 443
W+AMI G +HG A A+D F KM + G++P+ + +I +L ACSH GLV +GRRYF+ M
Sbjct: 342 TWSAMINGFAIHGQAGDAIDCFCKMRQAGVRPSDVAYINLLTACSHGGLVEEGRRYFSQM 401
Query: 444 INDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDI 503
++ G+EP IEHYGC+VD+L R+G L+EA+ I +MP++P+ VIW +LL R GN ++
Sbjct: 402 VSVDGLEPRIEHYGCMVDLLGRSGLLDEAEEFILNMPIKPDDVIWKALLGACRMQGNVEM 461
Query: 504 GEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRG 563
G+ AN L+ + P G YV LSN+YA+ G W +VSE+R MK++ RKDPG S I+ G
Sbjct: 462 GKRVANILMDMVPHDSGAYVALSNMYASQGNWSEVSEMRLRMKEKDIRKDPGCSLIDIDG 521
Query: 564 VLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELENHSE 623
VLHEFVV D SHP+ EI+S L E+ +KL+ AG+ P TTQVLL +E++ +KE L HSE
Sbjct: 522 VLHEFVVEDDSHPKAKEINSMLVEISDKLRLAGYRPITTQVLLNLEEE-DKENVLHYHSE 580
Query: 624 RLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGSC 683
++A AFGLI+ PIRIVKNLR+C DCHS KL+S +Y R+I VRD RFHHF++GSC
Sbjct: 581 KIATAFGLISTSPGKPIRIVKNLRICEDCHSSIKLISKVYKRKITVRDRKRFHHFQDGSC 640
Query: 684 SCKDFW 689
SC D+W
Sbjct: 641 SCMDYW 646
|
|
| TAIR|locus:2118964 EMB2758 "embryo defective 2758" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1151 (410.2 bits), Expect = 7.9e-117, P = 7.9e-117
Identities = 257/674 (38%), Positives = 386/674 (57%)
Query: 26 NILKFSSTHKETQQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHP 85
++LK T + ++H L++K ++ +++ L+ LY + AR +FD +
Sbjct: 158 SVLKACRTVIDGNKIHCLALKFGFMWDVYVAASLIHLY--SRYKAVGNARILFDEMPVR- 214
Query: 86 SLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIH 145
+ +N +I Y + + EALTL L R + D+ T+ ++ G G IH
Sbjct: 215 DMGSWNAMISGYCQSGNAKEALTLSNGL--RAM--DSVTVVSLLSACTEAGDFNRGVTIH 270
Query: 146 GLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVE 205
K G + FV + L+ +YA+FG + ++VFD M +DL+SWN +I Y +
Sbjct: 271 SYSIKHGLESELFVSNKLIDLYAEFGRLRDCQKVFDRMYVRDLISWNSIIKAYELNEQPL 330
Query: 206 VAMKLFDEMP----DRDLFSWTCLVDGFSKCGKVEIAREI--FYRMPN---RNLVSWNAM 256
A+ LF EM D + L S+ G + R + F ++ NA+
Sbjct: 331 RAISLFQEMRLSRIQPDCLTLISLASILSQLGDIRACRSVQGFTLRKGWFLEDITIGNAV 390
Query: 257 INGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLI-GDVLPN 315
+ Y K G VDSA +F+ + D+I+WN++I+GY NG EA+E+ M G++ N
Sbjct: 391 VVMYAKLGLVDSARAVFNWLPNTDVISWNTIISGYAQNGFASEAIEMYNIMEEEGEIAAN 450
Query: 316 DATXXXXXXXXXXXXXXNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFR 375
T +G +H ++KNG +D + T L MY KCG +E AL++F
Sbjct: 451 QGTWVSVLPACSQAGALRQGMKLHGRLLKNGLYLDVFVVTSLADMYGKCGRLEDALSLFY 510
Query: 376 AISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVND 435
I + W +I G HG +A+ LF +M G+KP ITF+ +L+ACSH+GLV++
Sbjct: 511 QIPRVNSVPWNTLIACHGFHGHGEKAVMLFKEMLDEGVKPDHITFVTLLSACSHSGLVDE 570
Query: 436 GRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGA 495
G+ F MM DYGI P+++HYGC+VD+ R G LE A I+SM ++P+ IW +LLS
Sbjct: 571 GQWCFEMMQTDYGITPSLKHYGCMVDMYGRAGQLETALKFIKSMSLQPDASIWGALLSAC 630
Query: 496 RNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPG 555
R HGN D+G+ A+ +L +V P+ +G +V+LSN+YA+AG+W+ V E+R + +G RK PG
Sbjct: 631 RVHGNVDLGKIASEHLFEVEPEHVGYHVLLSNMYASAGKWEGVDEIRSIAHGKGLRKTPG 690
Query: 556 SSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKE 615
SS+E + F G+++HP +E++ +L+ ++ KLK G+VPD VL +ED EKE
Sbjct: 691 WSSMEVDNKVEVFYTGNQTHPMYEEMYRELTALQAKLKMIGYVPDHRFVLQDVEDD-EKE 749
Query: 616 AELENHSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRF 675
L +HSERLAIAF LI +++ IRI KNLRVC DCHSVTK +S I REIIVRD++RF
Sbjct: 750 HILMSHSERLAIAFALIATPAKTTIRIFKNLRVCGDCHSVTKFISKITEREIIVRDSNRF 809
Query: 676 HHFKNGSCSCKDFW 689
HHFKNG CSC D+W
Sbjct: 810 HHFKNGVCSCGDYW 823
|
|
| TAIR|locus:2077878 AT3G08820 "AT3G08820" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1143 (407.4 bits), Expect = 5.6e-116, P = 5.6e-116
Identities = 247/671 (36%), Positives = 370/671 (55%)
Query: 27 ILKFSSTHKETQQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPS 86
++ + T +Q+H +S+ + ++H LL L Y+ +F Q P+
Sbjct: 19 LISVACTVNHLKQIH-VSLINHHLHHDTFLVNLL-LKRTLFFRQTKYSYLLFSHT-QFPN 75
Query: 87 LVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHG 146
+ LYN LI +V N HE L LF + L FT P V+K R + K G +H
Sbjct: 76 IFLYNSLINGFVNNHLFHETLDLFLSIRKHGLYLHGFTFPLVLKACTRASSRKLGIDLHS 135
Query: 147 LVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEV 206
LV K GF D ++SL+S+Y+ G ++ ++FD + D+ +V+W L GY G
Sbjct: 136 LVVKCGFNHDVAAMTSLLSIYSGSGRLNDAHKLFDEIPDRSVVTWTALFSGYTTSGRHRE 195
Query: 207 AMKLFDEMPDRDLFSWTC-LVDGFSKC---GKVEIAREIFYRMPN----RNLVSWNAMIN 258
A+ LF +M + + + +V S C G ++ I M +N ++N
Sbjct: 196 AIDLFKKMVEMGVKPDSYFIVQVLSACVHVGDLDSGEWIVKYMEEMEMQKNSFVRTTLVN 255
Query: 259 GYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDAT 318
Y K G ++ A +FD M +D++TW++MI GY N E +EL ML ++ P+ +
Sbjct: 256 LYAKCGKMEKARSVFDSMVEKDIVTWSTMIQGYASNSFPKEGIELFLQMLQENLKPDQFS 315
Query: 319 XXXXXXXXXXXXXXNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAIS 378
+ G W S I ++ F+ + + LI MY+KCG++ VF+ +
Sbjct: 316 IVGFLSSCASLGALDLGEWGISLIDRHEFLTNLFMANALIDMYAKCGAMARGFEVFKEMK 375
Query: 379 KKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRR 438
+K + A I GL +G + +F + ++G+ P TF+G+L C HAGL+ DG R
Sbjct: 376 EKDIVIMNAAISGLAKNGHVKLSFAVFGQTEKLGISPDGSTFLGLLCGCVHAGLIQDGLR 435
Query: 439 YFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNH 498
+FN + Y ++ T+EHYGC+VD+ R G L++A I MPMRPN ++W +LLSG R
Sbjct: 436 FFNAISCVYALKRTVEHYGCMVDLWGRAGMLDDAYRLICDMPMRPNAIVWGALLSGCRLV 495
Query: 499 GNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSS 558
+ + E LI + P G YV LSNIY+ G+WD+ +EVR+MM K+G +K PG S
Sbjct: 496 KDTQLAETVLKELIALEPWNAGNYVQLSNIYSVGGRWDEAAEVRDMMNKKGMKKIPGYSW 555
Query: 559 IEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAEL 618
IE G +HEF+ DKSHP +D+I++KL ++ N+++ G VP T V +E++ EKE L
Sbjct: 556 IELEGKVHEFLADDKSHPLSDKIYAKLEDLGNEMRLMGFVPTTEFVFFDVEEE-EKERVL 614
Query: 619 ENHSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHF 678
HSE+LA+A GLI+ IR+VKNLRVC DCH V KL+S I REI+VRDN+RFH F
Sbjct: 615 GYHSEKLAVALGLISTDHGQVIRVVKNLRVCGDCHEVMKLISKITRREIVVRDNNRFHCF 674
Query: 679 KNGSCSCKDFW 689
NGSCSC D+W
Sbjct: 675 TNGSCSCNDYW 685
|
|
| TAIR|locus:2081635 AT3G62890 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1133 (403.9 bits), Expect = 6.4e-115, P = 6.4e-115
Identities = 216/481 (44%), Positives = 324/481 (67%)
Query: 216 DRDLFSWTCLVDGFSKCGKVEIAREIFYRMPNRNLVSWNAMINGYMKAGDVDSACELFDD 275
D+D F T L++ +S CG + A+ +F +++L +WN+++N Y KAG +D A +LFD+
Sbjct: 94 DKDPFVRTSLLNMYSSCGDLRSAQRVFDDSGSKDLPAWNSVVNAYAKAGLIDDARKLFDE 153
Query: 276 MEIRDLITWNSMIAGYELNGRFMEALELLETMLIGD-----VLPNDATXXXXXXXXXXXX 330
M R++I+W+ +I GY + G++ EAL+L M + V PN+ T
Sbjct: 154 MPERNVISWSCLINGYVMCGKYKEALDLFREMQLPKPNEAFVRPNEFTMSTVLSACGRLG 213
Query: 331 XXNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAI-SKKKVGHWTAMI 389
+G+W+H+YI K +D VLGT LI MY+KCGS+E A VF A+ SKK V ++AMI
Sbjct: 214 ALEQGKWVHAYIDKYHVEIDIVLGTALIDMYAKCGSLERAKRVFNALGSKKDVKAYSAMI 273
Query: 390 VGLGMHGMATQALDLFNKMCRM-GMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYG 448
L M+G+ + LF++M + P ++TF+G+L AC H GL+N+G+ YF MMI ++G
Sbjct: 274 CCLAMYGLTDECFQLFSEMTTSDNINPNSVTFVGILGACVHRGLINEGKSYFKMMIEEFG 333
Query: 449 IEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAA 508
I P+I+HYGC+VD+ R+G ++EA+S I SMPM P+ +IW SLLSG+R G+ E A
Sbjct: 334 ITPSIQHYGCMVDLYGRSGLIKEAESFIASMPMEPDVLIWGSLLSGSRMLGDIKTCEGAL 393
Query: 509 NNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLHEF 568
LI++ P G YV+LSN+YA G+W +V +R M+ +G K PG S +E GV+HEF
Sbjct: 394 KRLIELDPMNSGAYVLLSNVYAKTGRWMEVKCIRHEMEVKGINKVPGCSYVEVEGVVHEF 453
Query: 569 VVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELENHSERLAIA 628
VVGD+S +++ I++ L E+ +L+ AG+V DT +VLL + ++K+KE L HSE+LAIA
Sbjct: 454 VVGDESQQESERIYAMLDEIMQRLREAGYVTDTKEVLLDL-NEKDKEIALSYHSEKLAIA 512
Query: 629 FGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGSCSCKDF 688
F L+ + +P+RI+KNLR+C DCH V K++S +++REI+VRD +RFHHF++GSCSC+DF
Sbjct: 513 FCLMKTRPGTPVRIIKNLRICGDCHLVMKMISKLFSREIVVRDCNRFHHFRDGSCSCRDF 572
Query: 689 W 689
W
Sbjct: 573 W 573
|
|
| TAIR|locus:2154855 AT5G66520 "AT5G66520" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1131 (403.2 bits), Expect = 1.0e-114, P = 1.0e-114
Identities = 215/474 (45%), Positives = 304/474 (64%)
Query: 216 DRDLFSWTCLVDGFSKCGKVEIAREIFYRMPNRNLVSWNAMINGYMKAGDVDSACELFDD 275
+ D+++ L++ ++ G ++A +F R+P + VSWN++I GY+KAG +D A LF
Sbjct: 147 ENDVYAVNSLINSYAVTGNFKLAHLLFDRIPEPDDVSWNSVIKGYVKAGKMDIALTLFRK 206
Query: 276 MEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATXXXXXXXXXXXXXXNKG 335
M ++ I+W +MI+GY EAL+L M DV P++ + +G
Sbjct: 207 MAEKNAISWTTMISGYVQADMNKEALQLFHEMQNSDVEPDNVSLANALSACAQLGALEQG 266
Query: 336 RWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMH 395
+W+HSY+ K +D VLG +LI MY+KCG +E AL VF+ I KK V WTA+I G H
Sbjct: 267 KWIHSYLNKTRIRMDSVLGCVLIDMYAKCGEMEEALEVFKNIKKKSVQAWTALISGYAYH 326
Query: 396 GMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEH 455
G +A+ F +M +MG+KP ITF VL ACS+ GLV +G+ F M DY ++PTIEH
Sbjct: 327 GHGREAISKFMEMQKMGIKPNVITFTAVLTACSYTGLVEEGKLIFYSMERDYNLKPTIEH 386
Query: 456 YGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVA 515
YGC+VD+L R G L+EAK I+ MP++PN VIW +LL R H N ++GE LI +
Sbjct: 387 YGCIVDLLGRAGLLDEAKRFIQEMPLKPNAVIWGALLKACRIHKNIELGEEIGEILIAID 446
Query: 516 PDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLHEFVVGDKSH 575
P G YV +NI+A +WDK +E R +MK++G K PG S+I G HEF+ GD+SH
Sbjct: 447 PYHGGRYVHKANIHAMDKKWDKAAETRRLMKEQGVAKVPGCSTISLEGTTHEFLAGDRSH 506
Query: 576 PQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELENHSERLAIAFGLINVK 635
P+ ++I SK MR KL+ G+VP+ ++LL + D E+EA + HSE+LAI +GLI K
Sbjct: 507 PEIEKIQSKWRIMRRKLEENGYVPELEEMLLDLVDDDEREAIVHQHSEKLAITYGLIKTK 566
Query: 636 SRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGSCSCKDFW 689
+ IRI+KNLRVC DCH VTKL+S IY R+I++RD +RFHHF++G CSC D+W
Sbjct: 567 PGTIIRIMKNLRVCKDCHKVTKLISKIYKRDIVMRDRTRFHHFRDGKCSCGDYW 620
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q9LN01 | PPR21_ARATH | No assigned EC number | 0.4133 | 0.9767 | 0.9082 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
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 | GSVIVG00029135001 | SubName- Full=Chromosome chr12 scaffold_47, whole genome shotgun sequence; (434 aa) | |||||||||
(Vitis vinifera) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 689 | |||
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 1e-157 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 1e-139 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 1e-65 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 2e-50 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 5e-46 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 5e-25 | |
| pfam14432 | 116 | pfam14432, DYW_deaminase, DYW family of nucleic ac | 5e-19 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 9e-13 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 2e-11 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 4e-11 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-10 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 6e-10 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 8e-08 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 1e-06 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-06 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 2e-06 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 4e-06 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 2e-05 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-05 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-05 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 4e-05 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 6e-05 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 1e-04 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 3e-04 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 6e-04 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 9e-04 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 0.001 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 0.001 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 0.003 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 476 bits (1227), Expect = e-157
Identities = 230/628 (36%), Positives = 350/628 (55%), Gaps = 25/628 (3%)
Query: 74 ARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAA 133
AR +FDR+ + + +N +I Y N E L LF + + + PD T+ VI
Sbjct: 241 ARLVFDRMPRR-DCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACE 299
Query: 134 RLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNC 193
LG + G+++HG V K GF D V +SL+ MY G +VF M+ KD VSW
Sbjct: 300 LLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTA 359
Query: 194 LIDGYVKKG------EVEVAMKLFDEMPDRDLFSWTCLVDGFSKC---GKVEIAREIFYR 244
+I GY K G E M+ + PD + S C G +++ ++
Sbjct: 360 MISGYEKNGLPDKALETYALMEQDNVSPDE-----ITIASVLSACACLGDLDVGVKLHEL 414
Query: 245 MPNRNLVSW----NAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEA 300
+ L+S+ NA+I Y K +D A E+F ++ +D+I+W S+IAG LN R EA
Sbjct: 415 AERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEA 474
Query: 301 LELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQM 360
L M + + PN TL++ALSA A + L G+ +H+++++ G DG L L+ +
Sbjct: 475 LIFFRQM-LLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDL 533
Query: 361 YSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITF 420
Y +CG + A F + +K V W ++ G HG + A++LFN+M G+ P +TF
Sbjct: 534 YVRCGRMNYAWNQFNS-HEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTF 592
Query: 421 IGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMP 480
I +L ACS +G+V G YF+ M Y I P ++HY C+VD+L R G L EA + I MP
Sbjct: 593 ISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMP 652
Query: 481 MRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSE 540
+ P+ +W +LL+ R H + ++GE AA ++ ++ P+++G Y++L N+YA AG+WD+V+
Sbjct: 653 ITPDPAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVAR 712
Query: 541 VREMMKKRGFRKDPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPD 600
VR+ M++ G DPG S +E +G +H F+ D+SHPQ EI++ L K+KA+G
Sbjct: 713 VRKTMRENGLTVDPGCSWVEVKGKVHAFLTDDESHPQIKEINTVLEGFYEKMKASGL--- 769
Query: 601 TTQVLLCIEDQKEKEAE-LENHSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLL 659
+++ + + + HSERLAIAFGLIN PI + KNL +C +CH+ K +
Sbjct: 770 AGSESSSMDEIEVSKDDIFCGHSERLAIAFGLINTVPGMPIWVTKNLYMCENCHNTVKFI 829
Query: 660 SGIYNREIIVRDNSRFHHFKNGSCSCKD 687
S I REI VRD +FHHFK+G CSC D
Sbjct: 830 SKIVRREISVRDTEQFHHFKDGECSCGD 857
|
Length = 857 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 423 bits (1090), Expect = e-139
Identities = 212/628 (33%), Positives = 338/628 (53%), Gaps = 20/628 (3%)
Query: 76 SIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLP-----CVIK 130
+ D S V I+ V R EAL LF L FTLP +++
Sbjct: 76 ARLDDTQIRKSGVSLCSQIEKLVACGRHREALELFEILEAGC----PFTLPASTYDALVE 131
Query: 131 GAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVS 190
L +I+ K ++ V GF D+++++ ++ M+ K G + RR+FD M +++L S
Sbjct: 132 ACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPERNLAS 191
Query: 191 WNCLIDGYVKKGEVEVAMKLFDEM----PDRDLFSWTCLVDGFSKCGKVEIAREIF---- 242
W +I G V G A LF EM D + ++ ++ + G +++
Sbjct: 192 WGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVL 251
Query: 243 -YRMPNRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEAL 301
+ VS A+I+ Y K GD++ A +FD M + + WNSM+AGY L+G EAL
Sbjct: 252 KTGVVGDTFVSC-ALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEAL 310
Query: 302 ELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMY 361
L M V + T + + LA+L + H+ +++ GF +D V T L+ +Y
Sbjct: 311 CLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLY 370
Query: 362 SKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFI 421
SK G +E A VF + +K + W A+I G G HG T+A+++F +M G+ P +TF+
Sbjct: 371 SKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFL 430
Query: 422 GVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPM 481
VL+AC ++GL G F M ++ I+P HY C++++L R G L+EA + I P
Sbjct: 431 AVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPF 490
Query: 482 RPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEV 541
+P +W +LL+ R H N ++G AA L + P+ + YVVL N+Y ++G+ + ++V
Sbjct: 491 KPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKV 550
Query: 542 REMMKKRGFRKDPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDT 601
E +K++G P + IE + H F GD+ HPQ+ EI+ KL E+ ++ G+V +
Sbjct: 551 VETLKRKGLSMHPACTWIEVKKQDHSFFSGDRLHPQSREIYQKLDELMKEISEYGYVAEE 610
Query: 602 TQVLLCIEDQKEKEAELENHSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSG 661
++L + D+ E++ HSE+LAIAFGLIN +P++I ++ R+C DCH V K ++
Sbjct: 611 NELLPDV-DEDEEKVSGRYHSEKLAIAFGLINTSEWTPLQITQSHRICKDCHKVIKFIAL 669
Query: 662 IYNREIIVRDNSRFHHFKNGSCSCKDFW 689
+ REI+VRD SRFHHFK G CSC D+W
Sbjct: 670 VTKREIVVRDASRFHHFKLGKCSCGDYW 697
|
Length = 697 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 232 bits (592), Expect = 1e-65
Identities = 145/475 (30%), Positives = 240/475 (50%), Gaps = 25/475 (5%)
Query: 59 LLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFL 118
+LS++V L +A +F ++ + L +N+L+ Y EAL L+ +L +
Sbjct: 127 MLSMFV--RFGELVHAWYVFGKMPER-DLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGV 183
Query: 119 LPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRR 178
PD +T PCV++ + + G+++H V + GF D V+++L++MY K G++ R
Sbjct: 184 RPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARL 243
Query: 179 VFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMP----DRDLFSWTCLVDGFSKCGK 234
VFD M +D +SWN +I GY + GE ++LF M D DL + T ++ G
Sbjct: 244 VFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGD 303
Query: 235 VEIAREIFYRMPNR----NLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAG 290
+ RE+ + ++ N++I Y+ G A ++F ME +D ++W +MI+G
Sbjct: 304 ERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISG 363
Query: 291 YELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVD 350
YE NG +ALE M +V P++ T+ S LSA A L L+ G +H + G +
Sbjct: 364 YEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISY 423
Query: 351 GVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCR 410
V+ LI+MYSKC I+ AL VF I +K V WT++I GL ++ +AL F +M
Sbjct: 424 VVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQM-L 482
Query: 411 MGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYG----CLVDILCRT 466
+ +KP ++T I L+AC+ G + G+ I+ + + I G L+D+ R
Sbjct: 483 LTLKPNSVTLIAALSACARIGALMCGKE-----IHAHVLRTGIGFDGFLPNALLDLYVRC 537
Query: 467 GYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIK--VAPDTI 519
G + A + S + V W LL+G HG + N +++ V PD +
Sbjct: 538 GRMNYAWNQFNS--HEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEV 590
|
Length = 857 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 188 bits (479), Expect = 2e-50
Identities = 122/408 (29%), Positives = 200/408 (49%), Gaps = 29/408 (7%)
Query: 137 AIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLID 196
A++EG ++ + ++++SM+ +FGE+ VF M ++DL SWN L+
Sbjct: 101 AVEEGSRVCSRALSSHPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVG 160
Query: 197 GYVKKGEVEVAMKLFDEM------PDRDLFSWTCLVDGFSKCGKV---EIAREIFYRMPN 247
GY K G + A+ L+ M PD ++++ C++ CG + RE+ +
Sbjct: 161 GYAKAGYFDEALCLYHRMLWAGVRPD--VYTFPCVL---RTCGGIPDLARGREVHAHVVR 215
Query: 248 RNLVS----WNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALEL 303
NA+I Y+K GDV SA +FD M RD I+WN+MI+GY NG +E LEL
Sbjct: 216 FGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLEL 275
Query: 304 LETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSK 363
TM V P+ T+ S +SA L GR MH Y+VK GF VD + LIQMY
Sbjct: 276 FFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLS 335
Query: 364 CGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGV 423
GS A VF + K WTAMI G +G+ +AL+ + M + + P IT V
Sbjct: 336 LGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASV 395
Query: 424 LNACSHAGLVNDGRRYFNMMINDYGIEPTIEHY----GCLVDILCRTGYLEEAKSTIESM 479
L+AC+ G ++ G + +++ + Y L+++ + +++A ++
Sbjct: 396 LSACACLGDLDVG-----VKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNI 450
Query: 480 PMRPNFVIWMSLLSGAR-NHGNKDIGEYAANNLIKVAPDTIGCYVVLS 526
P + + W S+++G R N+ + + L+ + P+++ LS
Sbjct: 451 P-EKDVISWTSIIAGLRLNNRCFEALIFFRQMLLTLKPNSVTLIAALS 497
|
Length = 857 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 173 bits (441), Expect = 5e-46
Identities = 116/423 (27%), Positives = 198/423 (46%), Gaps = 56/423 (13%)
Query: 74 ARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAA 133
AR +FD + + +L + +I V EA LF ++ + + T +++ +A
Sbjct: 177 ARRLFDEMPER-NLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASA 235
Query: 134 RLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNC 193
LG+ + G+Q+H V K G D FV +L+ MY+K G+I+ R VFD M +K V+WN
Sbjct: 236 GLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNS 295
Query: 194 LIDGYVKKGEVEVAMKLFDEMPDR----DLFSWTCLVDGFSKCGKVEIAREIFYRMPNRN 249
++ GY G E A+ L+ EM D D F+++ ++ FS+ +E A++ +
Sbjct: 296 MLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTG 355
Query: 250 L----VSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLE 305
V+ A+++ Y K G ++ A +FD M ++LI+WN++IAGY +GR +A+E+ E
Sbjct: 356 FPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFE 415
Query: 306 TMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCG 365
M+ V PN T ++ LSA YS G
Sbjct: 416 RMIAEGVAPNHVTFLAVLSACR---------------------------------YS--G 440
Query: 366 SIESALTVFRAIS-----KKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITF 420
E +F+++S K + H+ MI LG G+ +A + R KPT +
Sbjct: 441 LSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIR---RAPFKPTVNMW 497
Query: 421 IGVLNACSHAGLVNDGRRYFNMMINDYGIEP-TIEHYGCLVDILCRTGYLEEAKSTIESM 479
+L AC + GR + YG+ P + +Y L+++ +G EA +E++
Sbjct: 498 AALLTACRIHKNLELGRLAAEKL---YGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETL 554
Query: 480 PMR 482
+
Sbjct: 555 KRK 557
|
Length = 697 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 110 bits (276), Expect = 5e-25
Identities = 67/217 (30%), Positives = 110/217 (50%), Gaps = 17/217 (7%)
Query: 38 QQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLIKCY 97
QQLH +KT ++ + +S L+ +Y ++ AR +FD + + + V +N ++ Y
Sbjct: 244 QQLHCCVLKTGVVGDTFVSCALIDMY--SKCGDIEDARCVFDGMPEK-TTVAWNSMLAGY 300
Query: 98 VFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDK 157
+ S EAL L+ ++ D + D FT +I+ +RL ++ KQ H + + GF D
Sbjct: 301 ALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDI 360
Query: 158 FVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEM--- 214
++LV +Y+K+G ++ R VFD M K+L+SWN LI GY G A+++F+ M
Sbjct: 361 VANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAE 420
Query: 215 ---PDRDLFSW---TCLVDGFSKCGKVEIAREIFYRM 245
P+ F C G S+ G EIF M
Sbjct: 421 GVAPNHVTFLAVLSACRYSGLSEQGW-----EIFQSM 452
|
Length = 697 |
| >gnl|CDD|222749 pfam14432, DYW_deaminase, DYW family of nucleic acid deaminases | Back alignment and domain information |
|---|
Score = 82.8 bits (205), Expect = 5e-19
Identities = 46/131 (35%), Positives = 63/131 (48%), Gaps = 20/131 (15%)
Query: 554 PGSSSIEHRGVLHEFVVGDKSHPQTDEIHS---KLSEMRNKLKAAGH-VPDTTQVLLCIE 609
PG E + + GD SHP + E K+ + + K GH V
Sbjct: 1 PGCVWSE----GKKTLSGDGSHPTSKEELFQRIKVEGVVPETKEIGHDVDAEEFR----- 51
Query: 610 DQKEKEAELENHSERLAIAFGLINVKSRSPIRIVKNL-RVCNDCHSVTKLLSGIYNREII 668
D K L +H+E+ A+A+GL+ RI+K L R+C DCH + ++ REII
Sbjct: 52 DNGIKGKLLASHAEKQALAYGLL------TTRIIKVLKRMCGDCHEFFRYIAKYTGREII 105
Query: 669 VRDNSRFHHFK 679
VRD SRFHHFK
Sbjct: 106 VRDPSRFHHFK 116
|
A family of nucleic acid deaminases prototyped by the plant PPR DYW proteins that are implicated in chloroplast and mitochondrial RNA transcript maturation by numerous C to U editing events. The name derives from the DYW motif present at the C-terminus of the classical plant PPR DYW deaminases. Members of this family are present in bacteria, plants, Naegleria, and fungi. Plants and Naegleria show lineage-specific expansions of this family. The classical DYW family contain an additional C-terminal metal-binding cluster composed of 2 histidines and a CxC motif and are often fused to PPR repeats. Ascomycete versions, which are independent lateral transfers, contain a large insert within the domain and are often fused to ankyrin repeats. Bacterial versions are predicted to function as toxins in polymorphic toxin systems. Length = 116 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 71.4 bits (175), Expect = 9e-13
Identities = 47/210 (22%), Positives = 96/210 (45%), Gaps = 2/210 (0%)
Query: 285 NSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVK 344
NS + +G+ +AL+LLE+M V ++ V+ + +G + S +
Sbjct: 55 NSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALS 114
Query: 345 NGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDL 404
+ + LG ++ M+ + G + A VF + ++ + W ++ G G +AL L
Sbjct: 115 SHPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCL 174
Query: 405 FNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILC 464
+++M G++P TF VL C + GR ++ +G E ++ L+ +
Sbjct: 175 YHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVR-FGFELDVDVVNALITMYV 233
Query: 465 RTGYLEEAKSTIESMPMRPNFVIWMSLLSG 494
+ G + A+ + MP R + + W +++SG
Sbjct: 234 KCGDVVSARLVFDRMPRR-DCISWNAMISG 262
|
Length = 857 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 67.6 bits (165), Expect = 2e-11
Identities = 65/302 (21%), Positives = 135/302 (44%), Gaps = 22/302 (7%)
Query: 222 WTCLVDGFSKCGKVEIAREIFYRMPNR----NLVSWNAMINGYMKAGDVDSACELFDDME 277
+T L+ +K GKV+ E+F+ M N N+ ++ A+I+G +AG V A + M
Sbjct: 475 YTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMR 534
Query: 278 IR----DLITWNSMIAGYELNGRFMEALELLETML--IGDVLPNDATLVSALSAVAGLAV 331
+ D + +N++I+ +G A ++L M + P+ T+ + + A A
Sbjct: 535 SKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQ 594
Query: 332 LNKGRWMHSYIVKNGFVVDGVLG--TLLIQMYSKCGSIESALTVFRAISKKKVG----HW 385
+++ + ++ I + + G T+ + S+ G + AL+++ + KK V +
Sbjct: 595 VDRAKEVYQMIHEYN--IKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFF 652
Query: 386 TAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMIN 445
+A++ G G +A ++ + G+K +++ ++ ACS+A + I
Sbjct: 653 SALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYE-DIK 711
Query: 446 DYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMP---MRPNFVIWMSLLSGARNHGNKD 502
+ PT+ L+ LC L +A + M + PN + + LL + + D
Sbjct: 712 SIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDAD 771
Query: 503 IG 504
+G
Sbjct: 772 VG 773
|
Length = 1060 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 58.2 bits (142), Expect = 4e-11
Identities = 24/50 (48%), Positives = 37/50 (74%), Gaps = 4/50 (8%)
Query: 186 KDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDR----DLFSWTCLVDGFSK 231
D+V++N LIDGY KKG+VE A+KLF+EM R ++++++ L+DG K
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 56.3 bits (137), Expect = 2e-10
Identities = 16/47 (34%), Positives = 32/47 (68%), Gaps = 4/47 (8%)
Query: 249 NLVSWNAMINGYMKAGDVDSACELFDDMEIR----DLITWNSMIAGY 291
++V++N +I+GY K G V+ A +LF++M+ R ++ T++ +I G
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 62.6 bits (152), Expect = 6e-10
Identities = 85/356 (23%), Positives = 147/356 (41%), Gaps = 48/356 (13%)
Query: 143 QIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMD----DKDLVSWNCLIDGY 198
++ LV + G D + ++L+S AK G++D VF M + ++ ++ LIDG
Sbjct: 458 RVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGC 517
Query: 199 VKKGEVEVAMKLFDEM------PDRDLFSWTCLVDGFSKCGKVEIAREIFYRM------- 245
+ G+V A + M PDR +F+ L+ + G V+ A ++ M
Sbjct: 518 ARAGQVAKAFGAYGIMRSKNVKPDRVVFN--ALISACGQSGAVDRAFDVLAEMKAETHPI 575
Query: 246 -PNRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDL----ITWNSMIAGYELNGRFMEA 300
P+ ++ A++ AG VD A E++ + ++ + + G + A
Sbjct: 576 DPDH--ITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFA 633
Query: 301 LELLETMLIGDVLPNDATLVSALSAVAGLA--------VLNKGRWMHSYIVKNGFVVDGV 352
L + + M V P D SAL VAG A +L R K G + V
Sbjct: 634 LSIYDDMKKKGVKP-DEVFFSALVDVAGHAGDLDKAFEILQDAR-------KQGIKLGTV 685
Query: 353 LGTLLIQMYSKCGSIESALTVFRAISKKK----VGHWTAMIVGLGMHGMATQALDLFNKM 408
+ L+ S + + AL ++ I K V A+I L +AL++ ++M
Sbjct: 686 SYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEM 745
Query: 409 CRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILC 464
R+G+ P IT+ +L A + G + D GI+P + C+ LC
Sbjct: 746 KRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKED-GIKPNLVMCRCITG-LC 799
|
Length = 1060 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 48.1 bits (116), Expect = 8e-08
Identities = 14/34 (41%), Positives = 23/34 (67%)
Query: 244 RMPNRNLVSWNAMINGYMKAGDVDSACELFDDME 277
+ ++V++N +I+G +AG VD A EL D+ME
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 45.0 bits (108), Expect = 1e-06
Identities = 14/29 (48%), Positives = 21/29 (72%)
Query: 187 DLVSWNCLIDGYVKKGEVEVAMKLFDEMP 215
D+V++N LIDG + G V+ A++L DEM
Sbjct: 6 DVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 44.7 bits (107), Expect = 2e-06
Identities = 13/45 (28%), Positives = 23/45 (51%)
Query: 385 WTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSH 429
+ +I G G +AL LFN+M + G+KP T+ +++
Sbjct: 6 YNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 44.4 bits (106), Expect = 2e-06
Identities = 14/31 (45%), Positives = 23/31 (74%)
Query: 189 VSWNCLIDGYVKKGEVEVAMKLFDEMPDRDL 219
V++N LI GY K G++E A++LF EM ++ +
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 43.6 bits (104), Expect = 4e-06
Identities = 13/27 (48%), Positives = 22/27 (81%)
Query: 251 VSWNAMINGYMKAGDVDSACELFDDME 277
V++N++I+GY KAG ++ A ELF +M+
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMK 27
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 47.6 bits (113), Expect = 2e-05
Identities = 49/216 (22%), Positives = 83/216 (38%), Gaps = 42/216 (19%)
Query: 346 GFVVDGVLGTLLIQMYSKCGSIESALTVFRAIS----KKKVGHWTAMIVGLGMHGMATQA 401
G D L T LI +K G +++ VF + + V + A+I G G +A
Sbjct: 467 GLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKA 526
Query: 402 LDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVD 461
+ M +KP + F +++AC +G V+ R F D
Sbjct: 527 FGAYGIMRSKNVKPDRVVFNALISACGQSGAVD---RAF--------------------D 563
Query: 462 ILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNL----IKVAPD 517
+L A+ E+ P+ P+ + +L+ N G D + + IK P+
Sbjct: 564 VL--------AEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPE 615
Query: 518 TIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKD 553
Y + N + G WD + + MKK+G + D
Sbjct: 616 ---VYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPD 648
|
Length = 1060 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 42.0 bits (100), Expect = 2e-05
Identities = 17/49 (34%), Positives = 30/49 (61%), Gaps = 4/49 (8%)
Query: 218 DLFSWTCLVDGFSKCGKVEIAREIFYRMPNR----NLVSWNAMINGYMK 262
D+ ++ L+DG+ K GKVE A ++F M R N+ +++ +I+G K
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 41.6 bits (99), Expect = 2e-05
Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 3/47 (6%)
Query: 280 DLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDAT---LVSAL 323
D++T+N++I GY G+ EAL+L M + PN T L+ L
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 40.9 bits (97), Expect = 4e-05
Identities = 16/31 (51%), Positives = 22/31 (70%)
Query: 189 VSWNCLIDGYVKKGEVEVAMKLFDEMPDRDL 219
V++N LIDG K G VE A++LF EM +R +
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGI 31
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 40.1 bits (95), Expect = 6e-05
Identities = 14/31 (45%), Positives = 22/31 (70%)
Query: 251 VSWNAMINGYMKAGDVDSACELFDDMEIRDL 281
V++N +I+G KAG V+ A ELF +M+ R +
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGI 31
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 45.3 bits (107), Expect = 1e-04
Identities = 38/151 (25%), Positives = 69/151 (45%), Gaps = 11/151 (7%)
Query: 412 GMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEE 471
G+K + +++ C+ +G V+ F+ M+N G+E + +G L+D R G + +
Sbjct: 467 GLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNA-GVEANVHTFGALIDGCARAGQVAK 525
Query: 472 A---KSTIESMPMRPNFVIWMSLLSGARNHGNKD-----IGEYAANNLIKVAPDTIGCYV 523
A + S ++P+ V++ +L+S G D + E A + PD I
Sbjct: 526 AFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETH-PIDPDHI-TVG 583
Query: 524 VLSNIYAAAGQWDKVSEVREMMKKRGFRKDP 554
L A AGQ D+ EV +M+ + + P
Sbjct: 584 ALMKACANAGQVDRAKEVYQMIHEYNIKGTP 614
|
Length = 1060 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 38.1 bits (90), Expect = 3e-04
Identities = 13/28 (46%), Positives = 20/28 (71%)
Query: 280 DLITWNSMIAGYELNGRFMEALELLETM 307
D++T+N++I G GR EA+ELL+ M
Sbjct: 6 DVVTYNTLIDGLCRAGRVDEAVELLDEM 33
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 37.8 bits (89), Expect = 6e-04
Identities = 17/47 (36%), Positives = 25/47 (53%)
Query: 85 PSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKG 131
P +V YN LI Y + EAL LF ++ R + P+ +T +I G
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDG 47
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 36.8 bits (86), Expect = 9e-04
Identities = 10/28 (35%), Positives = 18/28 (64%)
Query: 250 LVSWNAMINGYMKAGDVDSACELFDDME 277
L ++NA++ KAGD D A + ++M+
Sbjct: 1 LETYNALLLALAKAGDPDLALAVLEEMK 28
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 36.7 bits (86), Expect = 0.001
Identities = 13/27 (48%), Positives = 19/27 (70%)
Query: 282 ITWNSMIAGYELNGRFMEALELLETML 308
+T+NS+I+GY G+ EALEL + M
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMK 27
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 36.7 bits (86), Expect = 0.001
Identities = 11/33 (33%), Positives = 18/33 (54%)
Query: 385 WTAMIVGLGMHGMATQALDLFNKMCRMGMKPTA 417
+ +I GL G +AL+LF +M G++P
Sbjct: 3 YNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 35.1 bits (82), Expect = 0.003
Identities = 10/31 (32%), Positives = 18/31 (58%)
Query: 220 FSWTCLVDGFSKCGKVEIAREIFYRMPNRNL 250
++ L+ G+ K GK+E A E+F M + +
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 689 | |||
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 100.0 | |
| PF14432 | 116 | DYW_deaminase: DYW family of nucleic acid deaminas | 99.96 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.93 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.93 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.91 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.9 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.88 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.88 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.85 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.84 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.84 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.81 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.81 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.8 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.79 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.78 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.76 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.76 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.75 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.74 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.62 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.61 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.61 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.57 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.56 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.55 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.52 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.49 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.48 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.48 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.47 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.44 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.44 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.44 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.43 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.43 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.39 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.38 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.37 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.37 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.37 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.35 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.35 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.34 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.32 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.27 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.24 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.24 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.23 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.22 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.21 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.21 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.2 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.14 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.13 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.12 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.12 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.1 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.07 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.07 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.06 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.06 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.06 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.06 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.04 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 99.04 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.02 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 99.01 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 98.97 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 98.95 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 98.92 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 98.91 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 98.91 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 98.91 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 98.89 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.87 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.85 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 98.84 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.83 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 98.81 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 98.8 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.78 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 98.77 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 98.72 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.7 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 98.7 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 98.7 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 98.68 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 98.68 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 98.68 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 98.67 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 98.65 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.63 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 98.63 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.58 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 98.57 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.57 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 98.56 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 98.51 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 98.51 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.5 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.47 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.46 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.44 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.44 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.43 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.37 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 98.35 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.34 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.33 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.33 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.31 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.3 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.28 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.27 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.22 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 98.22 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.2 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.14 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.13 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.12 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.12 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 98.08 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.08 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 98.07 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.03 | |
| PLN02789 | 320 | farnesyltranstransferase | 97.93 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 97.93 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 97.93 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 97.92 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 97.92 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 97.9 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 97.88 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 97.82 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 97.79 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 97.72 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.71 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 97.7 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 97.69 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 97.68 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 97.65 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.64 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.64 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.63 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 97.62 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.61 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.6 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 97.6 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.57 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 97.55 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 97.55 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 97.54 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.54 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 97.42 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.41 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.39 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.38 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.37 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 97.36 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.34 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 97.3 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.29 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.27 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 97.25 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.24 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 97.22 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 97.19 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 97.17 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 97.15 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 97.15 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 97.14 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 97.13 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 97.13 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.12 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.12 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 97.11 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.1 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.07 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 97.05 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 97.05 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 97.03 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 97.03 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 97.02 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 96.97 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 96.96 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 96.94 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 96.94 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 96.92 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 96.92 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 96.91 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 96.83 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 96.79 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 96.77 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 96.76 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 96.76 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 96.74 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 96.74 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 96.68 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 96.66 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 96.65 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 96.64 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 96.63 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 96.53 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 96.5 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 96.41 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 96.41 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 96.28 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 96.28 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 96.27 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 96.27 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 96.25 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 96.09 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 96.09 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 95.81 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 95.79 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 95.74 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 95.7 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 95.58 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 95.32 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 95.13 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 95.11 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 95.07 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 95.07 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 95.06 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 95.06 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 94.96 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 94.8 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 94.77 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 94.66 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 94.65 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 94.6 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 94.58 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 94.57 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 94.47 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 94.46 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 94.41 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 94.41 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 94.36 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 94.32 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 94.29 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 94.28 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 94.25 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 94.11 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 94.1 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 94.08 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 94.0 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 93.87 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 93.74 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 93.7 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 93.65 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 93.57 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 93.29 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 93.24 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 93.2 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 93.1 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 93.07 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 93.07 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 92.87 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 92.72 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 92.6 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 92.17 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 92.06 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 91.72 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 91.6 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 91.54 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 91.34 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 91.2 | |
| PRK09687 | 280 | putative lyase; Provisional | 91.16 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 90.64 | |
| PF10345 | 608 | Cohesin_load: Cohesin loading factor; InterPro: IP | 90.2 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 90.14 | |
| PF00637 | 143 | Clathrin: Region in Clathrin and VPS; InterPro: IP | 89.91 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 89.85 | |
| KOG1464 | 440 | consensus COP9 signalosome, subunit CSN2 [Posttran | 89.72 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 89.47 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 88.97 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 88.66 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 88.26 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 88.25 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 88.14 | |
| KOG0890 | 2382 | consensus Protein kinase of the PI-3 kinase family | 87.89 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 87.83 | |
| KOG2396 | 568 | consensus HAT (Half-A-TPR) repeat-containing prote | 87.81 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 87.79 | |
| PRK09687 | 280 | putative lyase; Provisional | 87.71 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 87.38 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 87.37 | |
| PF14853 | 53 | Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe | 87.33 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 87.29 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 86.99 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 86.99 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 86.8 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 86.77 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 86.42 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 85.91 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 85.46 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 85.43 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 84.74 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 84.67 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 84.5 | |
| PF14853 | 53 | Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe | 84.37 | |
| TIGR02508 | 115 | type_III_yscG type III secretion protein, YscG fam | 84.26 | |
| TIGR02508 | 115 | type_III_yscG type III secretion protein, YscG fam | 84.23 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 84.21 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 83.93 | |
| PRK11619 | 644 | lytic murein transglycosylase; Provisional | 83.75 | |
| PF10345 | 608 | Cohesin_load: Cohesin loading factor; InterPro: IP | 83.73 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 82.68 | |
| KOG1586 | 288 | consensus Protein required for fusion of vesicles | 82.56 | |
| PF07721 | 26 | TPR_4: Tetratricopeptide repeat; InterPro: IPR0117 | 82.3 | |
| PF02284 | 108 | COX5A: Cytochrome c oxidase subunit Va; InterPro: | 82.12 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 81.79 | |
| TIGR02270 | 410 | conserved hypothetical protein. Members are found | 81.68 | |
| PRK13800 | 897 | putative oxidoreductase/HEAT repeat-containing pro | 81.66 | |
| cd00923 | 103 | Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. | 80.81 | |
| PRK13800 | 897 | putative oxidoreductase/HEAT repeat-containing pro | 80.4 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 80.21 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 80.14 |
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-127 Score=1099.66 Aligned_cols=664 Identities=36% Similarity=0.652 Sum_probs=650.1
Q ss_pred ccCCccchH-HHHhcCCC---chHHHHHHHHHHHhCCCCCchHHHHHhhcccccCCCCHHHHHHHHhcccCCCChhhHHH
Q 036237 17 QHLPSRLHW-NILKFSST---HKETQQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNL 92 (689)
Q Consensus 17 ~~~p~~~~~-~~l~~c~~---~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~ 92 (689)
+..|+..|| .+|++|+. +..++++|..+.+.|+.||++++|.||.+|++ +|++++|.++|++|+ .||+++||+
T Consensus 182 g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k--~g~~~~A~~lf~~m~-~~d~~s~n~ 258 (857)
T PLN03077 182 GVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVK--CGDVVSARLVFDRMP-RRDCISWNA 258 (857)
T ss_pred CCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhc--CCCHHHHHHHHhcCC-CCCcchhHH
Confidence 688999999 78899975 78899999999999999999999999999999 999999999999999 999999999
Q ss_pred HHHHHHhCCCchHHHHHHHHhHhCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCC
Q 036237 93 LIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGE 172 (689)
Q Consensus 93 ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~ 172 (689)
+|.+|++.|++++|+++|.+|.+.|+.||..||+.++.+|++.|+++.|.++|..+.+.|+.||..+||+||.+|+++|+
T Consensus 259 li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~ 338 (857)
T PLN03077 259 MISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGS 338 (857)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHhhCCCCCeehHHHHHHHHHhCCChHHHHHHHhhCCC----CCcchHHHHHHHHHhCCChHHHHHHHhhcCc-
Q 036237 173 IDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPD----RDLFSWTCLVDGFSKCGKVEIAREIFYRMPN- 247 (689)
Q Consensus 173 ~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~- 247 (689)
+++|.++|++|.++|+++||++|.+|++.|++++|+++|++|.+ ||..||++++.+|++.|+++.|.++++.+.+
T Consensus 339 ~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~ 418 (857)
T PLN03077 339 WGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERK 418 (857)
T ss_pred HHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999954 8999999999999999999999999999986
Q ss_pred ---CCcchHHHHHHHHHhcCCHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHhccCCCCcChhhHHHHHH
Q 036237 248 ---RNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALS 324 (689)
Q Consensus 248 ---~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 324 (689)
++..+|++||++|+++|++++|.++|++|.++|+++||+||.+|+++|+.++|+++|++|.. +++||..||+.++.
T Consensus 419 g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~ 497 (857)
T PLN03077 419 GLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALS 497 (857)
T ss_pred CCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHH
Confidence 56889999999999999999999999999999999999999999999999999999999986 69999999999999
Q ss_pred HHHcccchhhHHHHHHHHHHhCCccchhHHhHHHhhHHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHH
Q 036237 325 AVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDL 404 (689)
Q Consensus 325 a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l 404 (689)
+|++.|.++.+.++|..+.+.|+.+|..++|+|+++|+++|++++|.++|+.+ .+|+.+||+||.+|+++|+.++|+++
T Consensus 498 a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-~~d~~s~n~lI~~~~~~G~~~~A~~l 576 (857)
T PLN03077 498 ACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-EKDVVSWNILLTGYVAHGKGSMAVEL 576 (857)
T ss_pred HHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-CCChhhHHHHHHHHHHcCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999 89999999999999999999999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCC
Q 036237 405 FNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPN 484 (689)
Q Consensus 405 ~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~ 484 (689)
|++|.+.|+.||.+||+.++.+|++.|++++|.++|+.|.+++|+.|+..+|++|+++|+++|++++|.+++++|+++||
T Consensus 577 f~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~~~pd 656 (857)
T PLN03077 577 FNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITPD 656 (857)
T ss_pred HHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCCCCCC
Confidence 99999999999999999999999999999999999999997889999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCcchHHHHHHHHHhCCCccCCcccEEEECCE
Q 036237 485 FVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGV 564 (689)
Q Consensus 485 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~ 564 (689)
..+|++|+.+|..+|+.+.|+.+.+++++++|+++..|..|+++|+..|+|++|.++++.|+++|++|+||+|||++++.
T Consensus 657 ~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~~g~s~ie~~~~ 736 (857)
T PLN03077 657 PAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWVEVKGK 736 (857)
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCCCCccEEEECCE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeeCCCCCcChHHHHHHHHHHHHHHHHCCCCCCCcccccccchhhHHHHhhhhhHHHHHHHHHhcCCCCCCcEEEec
Q 036237 565 LHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELENHSERLAIAFGLINVKSRSPIRIVK 644 (689)
Q Consensus 565 ~~~f~~~~~~~~~~~~~~~~l~~l~~~m~~~g~~pd~~~~~~~~~~~~~~~~~l~~~~~~la~~~~~~~~~~~~~~~~~~ 644 (689)
+|.|.+||.+||+.++|+..|+++..+|++.||.||+..++ +.++ ++|+..|++||||||+|||||++|+|.||||+|
T Consensus 737 ~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~g~~~~~~~~~-~~~~-~~k~~~~~~hse~la~a~~l~~~~~~~~i~i~k 814 (857)
T PLN03077 737 VHAFLTDDESHPQIKEINTVLEGFYEKMKASGLAGSESSSM-DEIE-VSKDDIFCGHSERLAIAFGLINTVPGMPIWVTK 814 (857)
T ss_pred EEEEecCCCCCcchHHHHHHHHHHHHHHHhCCcCCCcchhc-cccH-HHHHHHHHhccHHHHHHHhhhcCCCCCeEEEeC
Confidence 99999999999999999999999999999999999999877 4466 789999999999999999999999999999999
Q ss_pred ccccccchhhHHHHhhhhcCceEEEecCCccccccCccCCCCC
Q 036237 645 NLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGSCSCKD 687 (689)
Q Consensus 645 ~~~~c~~~~~~~~~~s~~~~~~~~~~~~~~~h~~~~g~csc~~ 687 (689)
|||+|+|||+++||||++.+|+|||||.+|||||+||+|||+|
T Consensus 815 nlr~c~dch~~~k~~s~~~~r~i~~rd~~rfh~f~~g~csc~d 857 (857)
T PLN03077 815 NLYMCENCHNTVKFISKIVRREISVRDTEQFHHFKDGECSCGD 857 (857)
T ss_pred CCEeCccHHHHHHHHHHHhCeEEEEecCCcceeCCCCcccCCC
Confidence 9999999999999999999999999999999999999999998
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-119 Score=1015.34 Aligned_cols=611 Identities=34% Similarity=0.582 Sum_probs=596.4
Q ss_pred HhcccCCCChhhHHHHHHHHHhCCCchHHHHHHHHhHhCC-CCCCcccHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCc
Q 036237 78 FDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRF-LLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFD 156 (689)
Q Consensus 78 f~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g-~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~ 156 (689)
++..+..++..+|+++|.+|.+.|++++|+++|+.|...+ +.||..||+.++.+|++.++++.+.++|..|++.|+.||
T Consensus 78 ~~~~~~~~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~ 157 (697)
T PLN03081 78 LDDTQIRKSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPD 157 (697)
T ss_pred cccccCCCCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcc
Confidence 3333325677899999999999999999999999999864 789999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHhhCCCCCeehHHHHHHHHHhCCChHHHHHHHhhCCC----CCcchHHHHHHHHHhC
Q 036237 157 KFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPD----RDLFSWTCLVDGFSKC 232 (689)
Q Consensus 157 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~d~~~~~~li~~~~~~ 232 (689)
..+||.|+++|+++|+++.|.++|++|++||.++||++|.+|++.|++++|+++|++|.+ ||..||+.++.+|++.
T Consensus 158 ~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~ 237 (697)
T PLN03081 158 QYMMNRVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGL 237 (697)
T ss_pred hHHHHHHHHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcC
Confidence 999999999999999999999999999999999999999999999999999999999964 7899999999999999
Q ss_pred CChHHHHHHHhhcCc----CCcchHHHHHHHHHhcCCHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHhc
Q 036237 233 GKVEIAREIFYRMPN----RNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETML 308 (689)
Q Consensus 233 g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 308 (689)
|..+.+.+++..+.+ ++..+|++||++|+++|++++|.++|++|..+|+++||+||.+|++.|++++|+++|++|.
T Consensus 238 ~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~ 317 (697)
T PLN03081 238 GSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMR 317 (697)
T ss_pred CcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 999999999988875 6799999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCcChhhHHHHHHHHHcccchhhHHHHHHHHHHhCCccchhHHhHHHhhHHhcCCHHHHHHHHHhcCCCChhhHHHH
Q 036237 309 IGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAM 388 (689)
Q Consensus 309 ~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l 388 (689)
+.|+.||..||++++.+|++.|.++.|.++|..+.+.|+.+|..++++|+++|+++|++++|.++|++|.++|+.+||+|
T Consensus 318 ~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~l 397 (697)
T PLN03081 318 DSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNAL 397 (697)
T ss_pred HcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCC
Q 036237 389 IVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGY 468 (689)
Q Consensus 389 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~ 468 (689)
|.+|+++|+.++|+++|++|.+.|+.||.+||+.++.+|++.|++++|.++|+.|.+++|+.|+..+|++||++|++.|+
T Consensus 398 I~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~ 477 (697)
T PLN03081 398 IAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGL 477 (697)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCC
Confidence 99999999999999999999999999999999999999999999999999999999888999999999999999999999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCcchHHHHHHHHHhC
Q 036237 469 LEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKR 548 (689)
Q Consensus 469 ~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~~~~~g~~~~A~~~~~~m~~~ 548 (689)
+++|.+++++|+.+|+..+|++|+.+|+.+|+++.|+.+++++++++|+++.+|..|+++|++.|+|++|.++++.|+++
T Consensus 478 ~~eA~~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~ 557 (697)
T PLN03081 478 LDEAYAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRK 557 (697)
T ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccCCcccEEEECCEEEEEeeCCCCCcChHHHHHHHHHHHHHHHHCCCCCCCcccccccchhhHHHHhhhhhHHHHHHH
Q 036237 549 GFRKDPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELENHSERLAIA 628 (689)
Q Consensus 549 ~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~l~~l~~~m~~~g~~pd~~~~~~~~~~~~~~~~~l~~~~~~la~~ 628 (689)
|+++.|++||+++++.+|.|.+||..||+.++|+..|.++..+|++.||.||+.++++++++ ++++..+.+||||||+|
T Consensus 558 g~~k~~g~s~i~~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~gy~~~~~~~~~~~~~-~~~~~~~~~hsekla~a 636 (697)
T PLN03081 558 GLSMHPACTWIEVKKQDHSFFSGDRLHPQSREIYQKLDELMKEISEYGYVAEENELLPDVDE-DEEKVSGRYHSEKLAIA 636 (697)
T ss_pred CCccCCCeeEEEECCeEEEEccCCCCCccHHHHHHHHHHHHHHHHHcCCCCCcchhhccccH-HHHHHHHHhccHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999 89999999999999999
Q ss_pred HHhcCCCCCCcEEEecccccccchhhHHHHhhhhcCceEEEecCCccccccCccCCCCCCC
Q 036237 629 FGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGSCSCKDFW 689 (689)
Q Consensus 629 ~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~s~~~~~~~~~~~~~~~h~~~~g~csc~~~~ 689 (689)
|||+++|+|.||||+||||+|+|||+|+|+||++.+|+|||||.+|||||+||+|||+|||
T Consensus 637 ~~l~~~~~~~~i~i~knlr~c~dch~~~k~~s~~~~r~i~~rd~~rfh~f~~g~csc~d~w 697 (697)
T PLN03081 637 FGLINTSEWTPLQITQSHRICKDCHKVIKFIALVTKREIVVRDASRFHHFKLGKCSCGDYW 697 (697)
T ss_pred hhCccCCCCCeEEEecCCEECCCchhhHHHHhhhcceEEEEecCCccccCCCCcccccccC
Confidence 9999999999999999999999999999999999999999999999999999999999999
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-81 Score=717.30 Aligned_cols=643 Identities=25% Similarity=0.388 Sum_probs=572.5
Q ss_pred cCCccchH-HHHhcCCC---chHHHHHHHHHHHhCCCCCchHHHHHhhcccccCCCCHHHHHHHHhcccCCCChhhHHHH
Q 036237 18 HLPSRLHW-NILKFSST---HKETQQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLL 93 (689)
Q Consensus 18 ~~p~~~~~-~~l~~c~~---~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~l 93 (689)
..|+..++ .+++.|.. +..+.++|..+.+.|..+++.++|.|+++|++ +|+++.|+++|++|+ +||+++||++
T Consensus 82 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n~li~~~~~--~g~~~~A~~~f~~m~-~~d~~~~n~l 158 (857)
T PLN03077 82 VPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAMLSMFVR--FGELVHAWYVFGKMP-ERDLFSWNVL 158 (857)
T ss_pred CCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHh--CCChHHHHHHHhcCC-CCCeeEHHHH
Confidence 46777777 77888864 78899999999999999999999999999999 999999999999999 9999999999
Q ss_pred HHHHHhCCCchHHHHHHHHhHhCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCh
Q 036237 94 IKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEI 173 (689)
Q Consensus 94 l~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~ 173 (689)
|.+|++.|++++|+++|++|...|+.||.+||+.++++|+..++++.+.++|..+++.|+.||..++|+||.+|+++|++
T Consensus 159 i~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~ 238 (857)
T PLN03077 159 VGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDV 238 (857)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhCCCCCeehHHHHHHHHHhCCChHHHHHHHhhCCC----CCcchHHHHHHHHHhCCChHHHHHHHhhcCc--
Q 036237 174 DLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPD----RDLFSWTCLVDGFSKCGKVEIAREIFYRMPN-- 247 (689)
Q Consensus 174 ~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~-- 247 (689)
++|.++|++|+++|.++||+||.+|++.|+.++|+++|++|.+ ||..||+.++.+|++.|+.+.|.+++..|.+
T Consensus 239 ~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g 318 (857)
T PLN03077 239 VSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTG 318 (857)
T ss_pred HHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999999999999999964 8999999999999999999999999999986
Q ss_pred --CCcchHHHHHHHHHhcCCHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHhccCCCCcChhhHHHHHHH
Q 036237 248 --RNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSA 325 (689)
Q Consensus 248 --~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a 325 (689)
++..+||+||++|+++|++++|.++|++|..+|+++||+||.+|++.|++++|+++|++|.+.|+.||..||+.++.+
T Consensus 319 ~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a 398 (857)
T PLN03077 319 FAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSA 398 (857)
T ss_pred CccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHH
Confidence 679999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcccchhhHHHHHHHHHHhCCccchhHHhHHHhhHHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHH
Q 036237 326 VAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLF 405 (689)
Q Consensus 326 ~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~ 405 (689)
|++.|+++.|.++|+.+.+.|+.++..++++|+++|+++|++++|.++|++|.++|+++||+||.+|+++|+.++|+++|
T Consensus 399 ~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf 478 (857)
T PLN03077 399 CACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFF 478 (857)
T ss_pred HhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCH
Q 036237 406 NKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNF 485 (689)
Q Consensus 406 ~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~ 485 (689)
++|.. +++||..||+.++.+|++.|.++.+.+++..+.+ .|+.++..++++||++|+++|++++|.++|+++ .||.
T Consensus 479 ~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~-~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~--~~d~ 554 (857)
T PLN03077 479 RQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLR-TGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH--EKDV 554 (857)
T ss_pred HHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHH-hCCCccceechHHHHHHHHcCCHHHHHHHHHhc--CCCh
Confidence 99986 6999999999999999999999999999999994 699999999999999999999999999999999 7999
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHhh--cCCCCchhHHHHHHHHHhcCCcchHHHHHHHHH-hCCCccCCcccEEEEC
Q 036237 486 VIWMSLLSGARNHGNKDIGEYAANNLIK--VAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMK-KRGFRKDPGSSSIEHR 562 (689)
Q Consensus 486 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~--~~p~~~~~~~~L~~~~~~~g~~~~A~~~~~~m~-~~~~~~~~~~~~~~~~ 562 (689)
.+|++++.+|.++|+.++|..+|++|.+ ..| |..+|..++.+|.+.|++++|.++|+.|+ +.|+.|+...+...+.
T Consensus 555 ~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~P-d~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~ 633 (857)
T PLN03077 555 VSWNILLTGYVAHGKGSMAVELFNRMVESGVNP-DEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVD 633 (857)
T ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-CcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHH
Confidence 9999999999999999999999999988 556 55799999999999999999999999998 7899888654432221
Q ss_pred CEEEEEeeCCCCCcChHHHHHHHHHHHHHHHHCCCCCCCcccccccchhhHHHHhhhhhHHHHH-HHHHhcCCCCCCcEE
Q 036237 563 GVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELENHSERLA-IAFGLINVKSRSPIR 641 (689)
Q Consensus 563 ~~~~~f~~~~~~~~~~~~~~~~l~~l~~~m~~~g~~pd~~~~~~~~~~~~~~~~~l~~~~~~la-~~~~~~~~~~~~~~~ 641 (689)
. + ...+..+ +..+.++++++.||...|...+.. +.....+. ..|..+ ..+.+.+...+..+.
T Consensus 634 ~----l----~r~G~~~-------eA~~~~~~m~~~pd~~~~~aLl~a-c~~~~~~e-~~e~~a~~l~~l~p~~~~~y~l 696 (857)
T PLN03077 634 L----L----GRAGKLT-------EAYNFINKMPITPDPAVWGALLNA-CRIHRHVE-LGELAAQHIFELDPNSVGYYIL 696 (857)
T ss_pred H----H----HhCCCHH-------HHHHHHHHCCCCCCHHHHHHHHHH-HHHcCChH-HHHHHHHHHHhhCCCCcchHHH
Confidence 1 1 1122333 444445556799999988665554 43222111 112222 234555555555554
Q ss_pred EecccccccchhhHHHHhhhhcCceEEE-------ecCCccccccCccCCC
Q 036237 642 IVKNLRVCNDCHSVTKLLSGIYNREIIV-------RDNSRFHHFKNGSCSC 685 (689)
Q Consensus 642 ~~~~~~~c~~~~~~~~~~s~~~~~~~~~-------~~~~~~h~~~~g~csc 685 (689)
+.+-....|+-.++.++...|..+.+.. --.+..|-|..|--|-
T Consensus 697 l~n~ya~~g~~~~a~~vr~~M~~~g~~k~~g~s~ie~~~~~~~f~~~d~~h 747 (857)
T PLN03077 697 LCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWVEVKGKVHAFLTDDESH 747 (857)
T ss_pred HHHHHHHCCChHHHHHHHHHHHHcCCCCCCCccEEEECCEEEEEecCCCCC
Confidence 4455667899999999999887773321 1135778887665443
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-66 Score=581.35 Aligned_cols=497 Identities=17% Similarity=0.214 Sum_probs=458.1
Q ss_pred CCCchHHHHHhhcccccCCCCHHHHHHHHhcccC----CCChhhHHHHHHHHHhCCCchHHHHHHHHhHhCCCCCCcccH
Q 036237 50 IYHSGISSRLLSLYVDPHINNLHYARSIFDRILQ----HPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTL 125 (689)
Q Consensus 50 ~~~~~~~~~ll~~~~~~~~g~~~~A~~~f~~~~~----~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~ 125 (689)
.++...+..++..+++ +|++++|+++|++|+. .++...++.++.+|.+.|..++|+++|+.|.. ||..||
T Consensus 367 ~~~~~~~~~~y~~l~r--~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Ty 440 (1060)
T PLN03218 367 KRKSPEYIDAYNRLLR--DGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTF 440 (1060)
T ss_pred CCCchHHHHHHHHHHH--CcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHH
Confidence 4567888999999999 9999999999999983 23444566778889999999999999999974 999999
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhhCC----CCCeehHHHHHHHHHhC
Q 036237 126 PCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMD----DKDLVSWNCLIDGYVKK 201 (689)
Q Consensus 126 ~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~----~~~~~~~~~li~~~~~~ 201 (689)
+.++.+|++.|+++.|.++|+.|.+.|+.||..+|++||.+|+++|++++|.++|++|. .||.++||+||.+|++.
T Consensus 441 n~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~ 520 (1060)
T PLN03218 441 NMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARA 520 (1060)
T ss_pred HHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHC
Confidence 99999999999999999999999999999999999999999999999999999999998 58999999999999999
Q ss_pred CChHHHHHHHhhCCC----CCcchHHHHHHHHHhCCChHHHHHHHhhcC------cCCcchHHHHHHHHHhcCCHHHHHH
Q 036237 202 GEVEVAMKLFDEMPD----RDLFSWTCLVDGFSKCGKVEIAREIFYRMP------NRNLVSWNAMINGYMKAGDVDSACE 271 (689)
Q Consensus 202 g~~~~A~~~~~~m~~----~d~~~~~~li~~~~~~g~~~~A~~~~~~~~------~~~~~~~~~li~~~~~~g~~~~A~~ 271 (689)
|++++|+++|++|.+ ||.++|+.||.+|++.|++++|.++|++|. .|+..+|++||++|+++|++++|.+
T Consensus 521 G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~e 600 (1060)
T PLN03218 521 GQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKE 600 (1060)
T ss_pred cCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHH
Confidence 999999999999964 899999999999999999999999999995 4788999999999999999999999
Q ss_pred HHHhcCC----CChHHHHHHHHHHHHcCChHHHHHHHHHhccCCCCcChhhHHHHHHHHHcccchhhHHHHHHHHHHhCC
Q 036237 272 LFDDMEI----RDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGF 347 (689)
Q Consensus 272 ~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~ 347 (689)
+|+.|.+ ++..+||.+|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|++++|.+++..|.+.|+
T Consensus 601 lf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~ 680 (1060)
T PLN03218 601 VYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGI 680 (1060)
T ss_pred HHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC
Confidence 9999985 467999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchhHHhHHHhhHHhcCCHHHHHHHHHhcC----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 036237 348 VVDGVLGTLLIQMYSKCGSIESALTVFRAIS----KKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGV 423 (689)
Q Consensus 348 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~l 423 (689)
.|+..+|++||.+|+++|++++|.++|++|. .||+.+||+||.+|++.|++++|+++|++|.+.|+.||..||+.+
T Consensus 681 ~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sL 760 (1060)
T PLN03218 681 KLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSIL 760 (1060)
T ss_pred CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 9999999999999999999999999999995 589999999999999999999999999999999999999999999
Q ss_pred HHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHH----hcC-------------------CHHHHHHHHHhC-
Q 036237 424 LNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILC----RTG-------------------YLEEAKSTIESM- 479 (689)
Q Consensus 424 l~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~----~~g-------------------~~~~A~~~~~~~- 479 (689)
+.+|++.|++++|.++|+.|.+ .|+.||..+|++|+.++. +++ ..++|..+|++|
T Consensus 761 L~a~~k~G~le~A~~l~~~M~k-~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~ 839 (1060)
T PLN03218 761 LVASERKDDADVGLDLLSQAKE-DGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETI 839 (1060)
T ss_pred HHHHHHCCCHHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHH
Confidence 9999999999999999999994 599999999999998743 222 246799999998
Q ss_pred --CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhh-cCCCCchhHHHHHHHHHhcCCcchHHHHHHHHHhCCCccCCc
Q 036237 480 --PMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIK-VAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPG 555 (689)
Q Consensus 480 --~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-~~p~~~~~~~~L~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~ 555 (689)
++.||..||+.++.++++.++.+.+..+++.+.. -.+.+..+|..|++.+.+. .++|..++++|.+.|+.|+..
T Consensus 840 ~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~~~Gi~p~~~ 916 (1060)
T PLN03218 840 SAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGEY--DPRAFSLLEEAASLGVVPSVS 916 (1060)
T ss_pred HCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhccC--hHHHHHHHHHHHHcCCCCCcc
Confidence 5889999999999888888889988888877643 3445677999999988332 358999999999999998875
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-62 Score=551.57 Aligned_cols=484 Identities=18% Similarity=0.195 Sum_probs=452.8
Q ss_pred HhcCCCchHHHHHHHHHHHhCC-CCCchHHHHHhhcccccCCCCHHHHHHHHhcccCCCChhhHHHHHHHHHhCCCchHH
Q 036237 28 LKFSSTHKETQQLHALSVKTNL-IYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEA 106 (689)
Q Consensus 28 l~~c~~~~~~~~~~~~~~~~g~-~~~~~~~~~ll~~~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~ll~~~~~~g~~~~a 106 (689)
+..++.+..+.+++..|.+.|+ .++..+++.++..|.+ .|.+++|..+|+.|+ .||..+||.+|.+|++.|++++|
T Consensus 380 l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~--~g~~~eAl~lf~~M~-~pd~~Tyn~LL~a~~k~g~~e~A 456 (1060)
T PLN03218 380 LLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKK--QRAVKEAFRFAKLIR-NPTLSTFNMLMSVCASSQDIDGA 456 (1060)
T ss_pred HHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHH--CCCHHHHHHHHHHcC-CCCHHHHHHHHHHHHhCcCHHHH
Confidence 3345779999999999999996 5678888999999999 999999999999999 89999999999999999999999
Q ss_pred HHHHHHhHhCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhhCC--
Q 036237 107 LTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMD-- 184 (689)
Q Consensus 107 ~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~-- 184 (689)
.++|++|.+.|+.||..+|+.+|.+|++.|+++.|.++|++|.+.|+.||..+|+.||.+|++.|++++|.++|++|.
T Consensus 457 ~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~ 536 (1060)
T PLN03218 457 LRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSK 536 (1060)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999996
Q ss_pred --CCCeehHHHHHHHHHhCCChHHHHHHHhhCC------CCCcchHHHHHHHHHhCCChHHHHHHHhhcCc----CCcch
Q 036237 185 --DKDLVSWNCLIDGYVKKGEVEVAMKLFDEMP------DRDLFSWTCLVDGFSKCGKVEIAREIFYRMPN----RNLVS 252 (689)
Q Consensus 185 --~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~------~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~----~~~~~ 252 (689)
.||.++||.||.+|++.|++++|.++|++|. .||.++|++++.+|++.|++++|.++|+.|.+ ++..+
T Consensus 537 Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~t 616 (1060)
T PLN03218 537 NVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEV 616 (1060)
T ss_pred CCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHH
Confidence 4899999999999999999999999999995 37999999999999999999999999999987 45699
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcC----CCChHHHHHHHHHHHHcCChHHHHHHHHHhccCCCCcChhhHHHHHHHHHc
Q 036237 253 WNAMINGYMKAGDVDSACELFDDME----IRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAG 328 (689)
Q Consensus 253 ~~~li~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~ 328 (689)
|+.+|.+|++.|++++|.++|++|. .||..+|+.+|.+|++.|+.++|.++|++|.+.|+.||..+|+.++.+|++
T Consensus 617 ynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k 696 (1060)
T PLN03218 617 YTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSN 696 (1060)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Confidence 9999999999999999999999998 469999999999999999999999999999999999999999999999999
Q ss_pred ccchhhHHHHHHHHHHhCCccchhHHhHHHhhHHhcCCHHHHHHHHHhcCC----CChhhHHHHHHHHHHcCCHHHHHHH
Q 036237 329 LAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISK----KKVGHWTAMIVGLGMHGMATQALDL 404 (689)
Q Consensus 329 ~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~l 404 (689)
.|++++|.++|+.|.+.|+.||..+|++||.+|++.|++++|.++|++|.. ||..+|+++|.+|++.|+.++|.++
T Consensus 697 ~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l 776 (1060)
T PLN03218 697 AKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDL 776 (1060)
T ss_pred CCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 999999999999999999999999999999999999999999999999974 7999999999999999999999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHhc----c-------------------CcHHHHHHHHHHhHHhcCCCCChhHHHHHHH
Q 036237 405 FNKMCRMGMKPTAITFIGVLNACSH----A-------------------GLVNDGRRYFNMMINDYGIEPTIEHYGCLVD 461 (689)
Q Consensus 405 ~~~m~~~g~~p~~~t~~~ll~a~~~----~-------------------g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 461 (689)
|.+|.+.|+.||..+|+.++..|.+ . +..+.|..+|++|.+ .|+.||..+|+.++.
T Consensus 777 ~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~-~Gi~Pd~~T~~~vL~ 855 (1060)
T PLN03218 777 LSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETIS-AGTLPTMEVLSQVLG 855 (1060)
T ss_pred HHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHH-CCCCCCHHHHHHHHH
Confidence 9999999999999999999876542 1 224679999999995 599999999999999
Q ss_pred HHHhcCCHHHHHHHHHhCC---CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhh--cCCC
Q 036237 462 ILCRTGYLEEAKSTIESMP---MRPNFVIWMSLLSGARNHGNKDIGEYAANNLIK--VAPD 517 (689)
Q Consensus 462 ~~~~~g~~~~A~~~~~~~~---~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~--~~p~ 517 (689)
.+.+.+..+.+..+++.|. ..|+..+|++|+.++.+. .++|..++++|.+ +-|+
T Consensus 856 cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~~~Gi~p~ 914 (1060)
T PLN03218 856 CLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGEY--DPRAFSLLEEAASLGVVPS 914 (1060)
T ss_pred HhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhccC--hHHHHHHHHHHHHcCCCCC
Confidence 9999999999999999985 457889999999998543 4689999999988 4454
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-62 Score=550.69 Aligned_cols=422 Identities=24% Similarity=0.379 Sum_probs=381.3
Q ss_pred cCCccchH-HHHhcCCC---chHHHHHHHHHHHhCCCCCchHHHHHhhcccccCCCCHHHHHHHHhcccCCCChhhHHHH
Q 036237 18 HLPSRLHW-NILKFSST---HKETQQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLL 93 (689)
Q Consensus 18 ~~p~~~~~-~~l~~c~~---~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~l 93 (689)
..|+..++ .+|++|.. ++.+.++|..+.+.|+.||++++|.|+.+|++ +|++++|.++|++|+ .||+++||++
T Consensus 119 ~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y~k--~g~~~~A~~lf~~m~-~~~~~t~n~l 195 (697)
T PLN03081 119 FTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVK--CGMLIDARRLFDEMP-ERNLASWGTI 195 (697)
T ss_pred CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHhc--CCCHHHHHHHHhcCC-CCCeeeHHHH
Confidence 46788888 67888864 78899999999999999999999999999999 999999999999999 9999999999
Q ss_pred HHHHHhCCCchHHHHHHHHhHhCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCh
Q 036237 94 IKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEI 173 (689)
Q Consensus 94 l~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~ 173 (689)
|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|..+.+.++|..+.+.|+.||..++|+||++|+++|++
T Consensus 196 i~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~ 275 (697)
T PLN03081 196 IGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDI 275 (697)
T ss_pred HHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhCCCCCeehHHHHHHHHHhCCChHHHHHHHhhCC----CCCcchHHHHHHHHHhCCChHHHHHHHhhcCc--
Q 036237 174 DLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMP----DRDLFSWTCLVDGFSKCGKVEIAREIFYRMPN-- 247 (689)
Q Consensus 174 ~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~----~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~-- 247 (689)
++|.++|++|+++|+++||+||.+|++.|+.++|+++|++|. .||..||++++.+|++.|++++|.+++..|.+
T Consensus 276 ~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g 355 (697)
T PLN03081 276 EDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTG 355 (697)
T ss_pred HHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhC
Confidence 999999999999999999999999999999999999999995 48999999999999999999999999999985
Q ss_pred --CCcchHHHHHHHHHhcCCHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHhccCCCCcChhhHHHHHHH
Q 036237 248 --RNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSA 325 (689)
Q Consensus 248 --~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a 325 (689)
++..+|++||++|+++|++++|.++|++|.++|+++||+||.+|++.|+.++|+++|++|.+.|+.||..||+.++.+
T Consensus 356 ~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a 435 (697)
T PLN03081 356 FPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSA 435 (697)
T ss_pred CCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHH
Confidence 678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcccchhhHHHHHHHHHH-hCCccchhHHhHHHhhHHhcCCHHHHHHHHHhcCC-CChhhHHHHHHHHHHcCCHHHHHH
Q 036237 326 VAGLAVLNKGRWMHSYIVK-NGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISK-KKVGHWTAMIVGLGMHGMATQALD 403 (689)
Q Consensus 326 ~~~~~~~~~a~~i~~~~~~-~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~ 403 (689)
|++.|.+++|.++|+.|.+ .|+.|+..+|+.++++|++.|++++|.++|++|.. |+..+|++|+.+|..+|+.+.|..
T Consensus 436 ~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~ 515 (697)
T PLN03081 436 CRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPFKPTVNMWAALLTACRIHKNLELGRL 515 (697)
T ss_pred HhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHH
Confidence 9999999999999999986 68999888888888888888888888877777653 566666666666666666666666
Q ss_pred HHHHHHHCCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhH
Q 036237 404 LFNKMCRMGMKPT-AITFIGVLNACSHAGLVNDGRRYFNMMI 444 (689)
Q Consensus 404 l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~ 444 (689)
+++++.+ +.|+ ..+|..+++.|++.|++++|.++++.|.
T Consensus 516 ~~~~l~~--~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~ 555 (697)
T PLN03081 516 AAEKLYG--MGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLK 555 (697)
T ss_pred HHHHHhC--CCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 6666653 3443 3456666666666666666666666665
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-30 Score=299.25 Aligned_cols=512 Identities=13% Similarity=0.045 Sum_probs=378.8
Q ss_pred HHhcCCCchHHHHHHHHHHHhCCCCCchHHHHHhhcccccCCCCHHHHHHHHhcccC--CCChhhHHHHHHHHHhCCCch
Q 036237 27 ILKFSSTHKETQQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQ--HPSLVLYNLLIKCYVFNQRSH 104 (689)
Q Consensus 27 ~l~~c~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~g~~~~A~~~f~~~~~--~~~~~~~~~ll~~~~~~g~~~ 104 (689)
++...+..+.+...+..+++.. +.++.+++.+...|.+ .|++++|...|+++.. +.+...|..+...+...|+++
T Consensus 338 ~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~--~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 414 (899)
T TIGR02917 338 IQLRLGRVDEAIATLSPALGLD-PDDPAALSLLGEAYLA--LGDFEKAAEYLAKATELDPENAAARTQLGISKLSQGDPS 414 (899)
T ss_pred HHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCChH
Confidence 3445566788888877776654 3456777788888888 8999999999987753 345567777888888888899
Q ss_pred HHHHHHHHhHhCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhhCC
Q 036237 105 EALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMD 184 (689)
Q Consensus 105 ~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 184 (689)
+|.+.|+.+.+.... +......++..+.+.|++++|..+++.+.+.. +++..+++.+...|...|++++|...|+++.
T Consensus 415 ~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~ 492 (899)
T TIGR02917 415 EAIADLETAAQLDPE-LGRADLLLILSYLRSGQFDKALAAAKKLEKKQ-PDNASLHNLLGAIYLGKGDLAKAREAFEKAL 492 (899)
T ss_pred HHHHHHHHHHhhCCc-chhhHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 898888888775422 23345556677778888888888888887653 5567788888888888888888888888765
Q ss_pred C---CCeehHHHHHHHHHhCCChHHHHHHHhhCCC---CCcchHHHHHHHHHhCCChHHHHHHHhhcCc---CCcchHHH
Q 036237 185 D---KDLVSWNCLIDGYVKKGEVEVAMKLFDEMPD---RDLFSWTCLVDGFSKCGKVEIAREIFYRMPN---RNLVSWNA 255 (689)
Q Consensus 185 ~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~ 255 (689)
+ .+...+..+...+...|++++|.+.|+++.+ .+..++..+...+.+.|+.++|...+.++.+ .+...+..
T Consensus 493 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 572 (899)
T TIGR02917 493 SIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALA 572 (899)
T ss_pred hhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHH
Confidence 3 3455677777888888888888888888754 2456777778888888888888888887754 23556677
Q ss_pred HHHHHHhcCCHHHHHHHHHhcCC---CChHHHHHHHHHHHHcCChHHHHHHHHHhccCCCCcChhhHHHHHHHHHcccch
Q 036237 256 MINGYMKAGDVDSACELFDDMEI---RDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVL 332 (689)
Q Consensus 256 li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~ 332 (689)
++..|.+.|++++|..+++.+.. .+...|..+...|...|++++|+..|+++.+.. +.+...+..+...+...|++
T Consensus 573 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~ 651 (899)
T TIGR02917 573 LAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNY 651 (899)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCH
Confidence 78888888888888888887753 356778888888888888888888888877643 23445566777777788888
Q ss_pred hhHHHHHHHHHHhCCccchhHHhHHHhhHHhcCCHHHHHHHHHhcCC---CChhhHHHHHHHHHHcCCHHHHHHHHHHHH
Q 036237 333 NKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISK---KKVGHWTAMIVGLGMHGMATQALDLFNKMC 409 (689)
Q Consensus 333 ~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 409 (689)
++|..++..+.+.. +.+...+..++..+...|++++|.++++.+.. .+...|..+...+...|++++|++.|+++.
T Consensus 652 ~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~ 730 (899)
T TIGR02917 652 AKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKAL 730 (899)
T ss_pred HHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 88888888877654 34566777788888888888888888887764 345567777777888888888888888877
Q ss_pred HCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCCHHH
Q 036237 410 RMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMP--MRPNFVI 487 (689)
Q Consensus 410 ~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~p~~~~ 487 (689)
.. .|+..++..+..++.+.|++++|.+.++.+.+ ..+.+...+..+...|.+.|++++|...|+++- .+++..+
T Consensus 731 ~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 806 (899)
T TIGR02917 731 KR--APSSQNAIKLHRALLASGNTAEAVKTLEAWLK--THPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVV 806 (899)
T ss_pred hh--CCCchHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHH
Confidence 74 45556666777777888888888888877774 334456777777788888888888888887762 2345667
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCcchHHHHHHHHHhCCC
Q 036237 488 WMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGF 550 (689)
Q Consensus 488 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~~~~~g~~~~A~~~~~~m~~~~~ 550 (689)
++.+...+...|+ +.|+..+++++++.|+++..+..++.+|...|++++|.++++++.+.+.
T Consensus 807 ~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~ 868 (899)
T TIGR02917 807 LNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAP 868 (899)
T ss_pred HHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 7777777777777 6677777777777777777777777777777777777777777776553
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-29 Score=296.63 Aligned_cols=509 Identities=14% Similarity=0.052 Sum_probs=429.4
Q ss_pred HhcCCCchHHHHHHHHHHHhCCCCCchHHHHHhhcccccCCCCHHHHHHHHhcccC--CCChhhHHHHHHHHHhCCCchH
Q 036237 28 LKFSSTHKETQQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQ--HPSLVLYNLLIKCYVFNQRSHE 105 (689)
Q Consensus 28 l~~c~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~g~~~~A~~~f~~~~~--~~~~~~~~~ll~~~~~~g~~~~ 105 (689)
+...+..+.+...+..+++.. +.+......+...+.+ .|++++|...+..+.. +.+...|+.+...+.+.|++++
T Consensus 305 ~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~--~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 381 (899)
T TIGR02917 305 EYQLGNLEQAYQYLNQILKYA-PNSHQARRLLASIQLR--LGRVDEAIATLSPALGLDPDDPAALSLLGEAYLALGDFEK 381 (899)
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHH--CCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCCCHHH
Confidence 344566888888888887754 3456677778888888 9999999999988753 4466788999999999999999
Q ss_pred HHHHHHHhHhCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhhCCC
Q 036237 106 ALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDD 185 (689)
Q Consensus 106 a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 185 (689)
|.+.|+++.+.. +.+...+..+...+...|++++|...+..+.+.. +........++..|.+.|++++|..+++.+..
T Consensus 382 A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 459 (899)
T TIGR02917 382 AAEYLAKATELD-PENAAARTQLGISKLSQGDPSEAIADLETAAQLD-PELGRADLLLILSYLRSGQFDKALAAAKKLEK 459 (899)
T ss_pred HHHHHHHHHhcC-CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhC-CcchhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 999999998753 2245567777778889999999999999998876 33445667788899999999999999998864
Q ss_pred ---CCeehHHHHHHHHHhCCChHHHHHHHhhCCC--C-CcchHHHHHHHHHhCCChHHHHHHHhhcCc---CCcchHHHH
Q 036237 186 ---KDLVSWNCLIDGYVKKGEVEVAMKLFDEMPD--R-DLFSWTCLVDGFSKCGKVEIAREIFYRMPN---RNLVSWNAM 256 (689)
Q Consensus 186 ---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~-d~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l 256 (689)
.+..+|+.+...|...|++++|...|+++.+ | +...+..+...+...|++++|.+.++.+.+ .+..++..+
T Consensus 460 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l 539 (899)
T TIGR02917 460 KQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILAL 539 (899)
T ss_pred hCCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHH
Confidence 4667899999999999999999999998865 3 456777888899999999999999999875 346788889
Q ss_pred HHHHHhcCCHHHHHHHHHhcCC---CChHHHHHHHHHHHHcCChHHHHHHHHHhccCCCCcChhhHHHHHHHHHcccchh
Q 036237 257 INGYMKAGDVDSACELFDDMEI---RDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLN 333 (689)
Q Consensus 257 i~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~ 333 (689)
...|.+.|+.++|...|+++.. .+...+..++..|...|++++|+.+++++.... +.+..++..+...+...|+++
T Consensus 540 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~ 618 (899)
T TIGR02917 540 AGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAA-PDSPEAWLMLGRAQLAAGDLN 618 (899)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHH
Confidence 9999999999999999998753 356778889999999999999999999998643 456778888999999999999
Q ss_pred hHHHHHHHHHHhCCccchhHHhHHHhhHHhcCCHHHHHHHHHhcCC---CChhhHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 036237 334 KGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISK---KKVGHWTAMIVGLGMHGMATQALDLFNKMCR 410 (689)
Q Consensus 334 ~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 410 (689)
+|...+..+.+.. +.+...+..+...|.+.|++++|...|+++.. .+..+|..++..+...|++++|.++++.+.+
T Consensus 619 ~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 697 (899)
T TIGR02917 619 KAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQK 697 (899)
T ss_pred HHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 9999999998765 44667788899999999999999999998765 3567899999999999999999999999988
Q ss_pred CCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-C-CCCCHHHH
Q 036237 411 MGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESM-P-MRPNFVIW 488 (689)
Q Consensus 411 ~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~ 488 (689)
.+ +++...+..+...+...|++++|...|+.+.. ..|+..++..++.++.+.|++++|.+.++++ . .+.+...+
T Consensus 698 ~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~ 773 (899)
T TIGR02917 698 QH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALK---RAPSSQNAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLR 773 (899)
T ss_pred hC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHh---hCCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHH
Confidence 64 45566788888899999999999999999883 4566678888999999999999999999886 2 33467788
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCcchHHHHHHHHHhC
Q 036237 489 MSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKR 548 (689)
Q Consensus 489 ~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~~~~~g~~~~A~~~~~~m~~~ 548 (689)
..+...|...|+.+.|...++++++..|+++.++..++.+|...|+ .+|..+++++.+.
T Consensus 774 ~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~ 832 (899)
T TIGR02917 774 TALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKL 832 (899)
T ss_pred HHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhh
Confidence 8899999999999999999999999999999999999999999999 8899999988764
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >PF14432 DYW_deaminase: DYW family of nucleic acid deaminases | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.9e-30 Score=214.22 Aligned_cols=106 Identities=63% Similarity=0.978 Sum_probs=96.0
Q ss_pred cccEEEECCEEEEEeeCCCCCcChHHHHHHHHHHHHHHHHCCCCCCCcccccccchhhHH--------HHhhhhhHHHHH
Q 036237 555 GSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEK--------EAELENHSERLA 626 (689)
Q Consensus 555 ~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~l~~l~~~m~~~g~~pd~~~~~~~~~~~~~~--------~~~l~~~~~~la 626 (689)
+++|+++ |.|.+||.+||+. ++..++...||.|++..+.+++++ +++ +..+..||||||
T Consensus 2 ~~~w~~~----h~F~sgd~shp~~--------~~~~~~~~~~~~~~~~~~~~~~~~-e~~~~~d~~~~~~~~~~HSEKlA 68 (116)
T PF14432_consen 2 GCSWIEV----HSFVSGDRSHPQS--------ELINKMKEEGYVPDTKEVGHDVDE-EEKHDYDEEEKEESLCYHSEKLA 68 (116)
T ss_pred CCCccce----EEEEeCCCcCccH--------HHHHHHHHcCCcchhhhhCCCchh-hhhhhcccccchhhhhccHHHHH
Confidence 6889876 9999999999997 556677888999999999888776 444 568899999999
Q ss_pred HHHHhcCCCCCCcEEEeccc-ccccchhhHHHHhhhhcCceEEEecCCcccccc
Q 036237 627 IAFGLINVKSRSPIRIVKNL-RVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFK 679 (689)
Q Consensus 627 ~~~~~~~~~~~~~~~~~~~~-~~c~~~~~~~~~~s~~~~~~~~~~~~~~~h~~~ 679 (689)
+||||+++ +|+||+ |+|+|||+++|+||++++|+|+|||++||||||
T Consensus 69 iafgli~~------~vvkn~~RvC~DCH~~~K~iS~~~~ReIiVRD~~rfHhFk 116 (116)
T PF14432_consen 69 IAFGLINT------RVVKNLKRVCGDCHSFIKFISKITGREIIVRDSNRFHHFK 116 (116)
T ss_pred HHhcccce------eEEecCCccchHHHHHHHHHHHHHCeEEEEeCCCeeeeCC
Confidence 99999999 899998 999999999999999999999999999999997
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.1e-21 Score=232.25 Aligned_cols=502 Identities=14% Similarity=0.063 Sum_probs=330.7
Q ss_pred CCchHHHHHHHHHHHhCCCCCchHHHHHhhcccccCCCCHHHHHHHHhcccC-CCChh-hH----------------HHH
Q 036237 32 STHKETQQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQ-HPSLV-LY----------------NLL 93 (689)
Q Consensus 32 ~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~g~~~~A~~~f~~~~~-~~~~~-~~----------------~~l 93 (689)
.+.+.+++...++.... +.++.++..+...+.+ .|+.++|.+.+++... .|+.. .+ ..+
T Consensus 42 ~~~d~a~~~l~kl~~~~-p~~p~~~~~~~~~~l~--~g~~~~A~~~l~~l~~~~P~~~~~~~~~~~~~~~~~~~~~~l~~ 118 (1157)
T PRK11447 42 HREDLVRQSLYRLELID-PNNPDVIAARFRLLLR--QGDSDGAQKLLDRLSQLAPDSNAYRSSRTTMLLSTPEGRQALQQ 118 (1157)
T ss_pred CChHHHHHHHHHHHccC-CCCHHHHHHHHHHHHh--CCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHhcCCchhhHHHH
Confidence 44777888777766543 3357778888888888 9999999999998864 34332 22 223
Q ss_pred HHHHHhCCCchHHHHHHHHhHhCCCCCCcc-cHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCC
Q 036237 94 IKCYVFNQRSHEALTLFCDLLDRFLLPDNF-TLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGE 172 (689)
Q Consensus 94 l~~~~~~g~~~~a~~~~~~m~~~g~~p~~~-t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~ 172 (689)
...+...|++++|++.|+.+.+.+ +|+.. ............|+.++|...++.+++.. +.+...+..+...+...|+
T Consensus 119 A~ll~~~g~~~eA~~~~~~~l~~~-p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~-P~~~~~~~~LA~ll~~~g~ 196 (1157)
T PRK11447 119 ARLLATTGRTEEALASYDKLFNGA-PPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADY-PGNTGLRNTLALLLFSSGR 196 (1157)
T ss_pred HHHHHhCCCHHHHHHHHHHHccCC-CCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHccCC
Confidence 346788999999999999998753 33322 11111222234589999999999999885 5567788899999999999
Q ss_pred hHHHHHHHhhCCCCCe------eh-----------------HH----------------------------------HHH
Q 036237 173 IDLGRRVFDAMDDKDL------VS-----------------WN----------------------------------CLI 195 (689)
Q Consensus 173 ~~~A~~~~~~m~~~~~------~~-----------------~~----------------------------------~li 195 (689)
.++|...|+++.+... .. +. ...
T Consensus 197 ~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~~~G 276 (1157)
T PRK11447 197 RDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRARAQG 276 (1157)
T ss_pred HHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHHHHHH
Confidence 9999999987642110 00 00 112
Q ss_pred HHHHhCCChHHHHHHHhhCCC--C-CcchHHHHHHHHHhCCChHHHHHHHhhcCcCCcc-----hH------------HH
Q 036237 196 DGYVKKGEVEVAMKLFDEMPD--R-DLFSWTCLVDGFSKCGKVEIAREIFYRMPNRNLV-----SW------------NA 255 (689)
Q Consensus 196 ~~~~~~g~~~~A~~~~~~m~~--~-d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-----~~------------~~ 255 (689)
..+...|++++|+..|++..+ | |...+..+..++.+.|+.++|+..|++..+.++. .+ ..
T Consensus 277 ~~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~ 356 (1157)
T PRK11447 277 LAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQ 356 (1157)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHH
Confidence 345667899999999988765 3 5678888889999999999999999988763221 11 12
Q ss_pred HHHHHHhcCCHHHHHHHHHhcCC---CChHHHHHHHHHHHHcCChHHHHHHHHHhccCCCCcC-hhhHHHHHHHHHcccc
Q 036237 256 MINGYMKAGDVDSACELFDDMEI---RDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPN-DATLVSALSAVAGLAV 331 (689)
Q Consensus 256 li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~~~ 331 (689)
+...+.+.|++++|+..|+++.. .+...+..+...+...|++++|++.|++.++.. |+ ...+..+...+. .+.
T Consensus 357 ~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~--p~~~~a~~~L~~l~~-~~~ 433 (1157)
T PRK11447 357 QGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMD--PGNTNAVRGLANLYR-QQS 433 (1157)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHH-hcC
Confidence 34567788999999999988764 356677888889999999999999999988643 33 223333332221 223
Q ss_pred hhhHHHHHHHHHHhCC--------ccchhHHhHHHhhHHhcCCHHHHHHHHHhcCC---CChhhHHHHHHHHHHcCCHHH
Q 036237 332 LNKGRWMHSYIVKNGF--------VVDGVLGTLLIQMYSKCGSIESALTVFRAISK---KKVGHWTAMIVGLGMHGMATQ 400 (689)
Q Consensus 332 ~~~a~~i~~~~~~~g~--------~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~ 400 (689)
.++|..++..+..... ......+..+...+...|++++|++.|++..+ .+...+..+...|.+.|++++
T Consensus 434 ~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~ 513 (1157)
T PRK11447 434 PEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQ 513 (1157)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH
Confidence 3444433332211100 00011233344444455555555555554433 122334444444555555555
Q ss_pred HHHHHHHHHHCCCCCCH-HHH--------------------------------------------HHHHHHHhccCcHHH
Q 036237 401 ALDLFNKMCRMGMKPTA-ITF--------------------------------------------IGVLNACSHAGLVND 435 (689)
Q Consensus 401 A~~l~~~m~~~g~~p~~-~t~--------------------------------------------~~ll~a~~~~g~~~~ 435 (689)
|+..|++..+. .|+. ..+ ..+...+...|+.++
T Consensus 514 A~~~l~~al~~--~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~e 591 (1157)
T PRK11447 514 ADALMRRLAQQ--KPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAE 591 (1157)
T ss_pred HHHHHHHHHHc--CCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHH
Confidence 55555554431 2221 111 123344555666666
Q ss_pred HHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHhh
Q 036237 436 GRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESM-PMRP-NFVIWMSLLSGARNHGNKDIGEYAANNLIK 513 (689)
Q Consensus 436 a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 513 (689)
|..+++. .+++...+..+.+.|.+.|++++|.+.+++. ...| +...+..++..+...|+.++|+..++++.+
T Consensus 592 A~~~l~~------~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~ 665 (1157)
T PRK11447 592 AEALLRQ------QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKLPA 665 (1157)
T ss_pred HHHHHHh------CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence 6665541 2344566777888888999999999888876 3344 567888888888889999999999998888
Q ss_pred cCCCCchhHHHHHHHHHhcCCcchHHHHHHHHHhCC
Q 036237 514 VAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRG 549 (689)
Q Consensus 514 ~~p~~~~~~~~L~~~~~~~g~~~~A~~~~~~m~~~~ 549 (689)
..|+++..+..++.++...|++++|.++++++....
T Consensus 666 ~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~ 701 (1157)
T PRK11447 666 TANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQA 701 (1157)
T ss_pred cCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhC
Confidence 888888888888899989999999999998887643
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=5.3e-21 Score=226.43 Aligned_cols=511 Identities=13% Similarity=0.069 Sum_probs=373.4
Q ss_pred HHhcCCCchHHHHHHHHHHHhCCCCCchHHHHH-hhcccccCCCCHHHHHHHHhcccC--CCChhhHHHHHHHHHhCCCc
Q 036237 27 ILKFSSTHKETQQLHALSVKTNLIYHSGISSRL-LSLYVDPHINNLHYARSIFDRILQ--HPSLVLYNLLIKCYVFNQRS 103 (689)
Q Consensus 27 ~l~~c~~~~~~~~~~~~~~~~g~~~~~~~~~~l-l~~~~~~~~g~~~~A~~~f~~~~~--~~~~~~~~~ll~~~~~~g~~ 103 (689)
++..-+..+.+...+..+++.. +|+....... ...... .|+.++|...|+++.. +.+...+..+...+...|++
T Consensus 121 ll~~~g~~~eA~~~~~~~l~~~-p~~~~la~~y~~~~~~~--~g~~~~A~~~L~~ll~~~P~~~~~~~~LA~ll~~~g~~ 197 (1157)
T PRK11447 121 LLATTGRTEEALASYDKLFNGA-PPELDLAVEYWRLVAKL--PAQRPEAINQLQRLNADYPGNTGLRNTLALLLFSSGRR 197 (1157)
T ss_pred HHHhCCCHHHHHHHHHHHccCC-CCChHHHHHHHHHHhhC--CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHccCCH
Confidence 3444456888888888877643 3343221111 222233 5899999999998875 33555788888899999999
Q ss_pred hHHHHHHHHhHhCCC------------------C--------------CCcccHH---------------------HHHH
Q 036237 104 HEALTLFCDLLDRFL------------------L--------------PDNFTLP---------------------CVIK 130 (689)
Q Consensus 104 ~~a~~~~~~m~~~g~------------------~--------------p~~~t~~---------------------~ll~ 130 (689)
++|++.|+++.+... . |+...+. ....
T Consensus 198 ~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~~~G~ 277 (1157)
T PRK11447 198 DEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRARAQGL 277 (1157)
T ss_pred HHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHHHHHHH
Confidence 999999998764321 0 1110000 1122
Q ss_pred HHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhhCCC--CCe---ehHHHH-----------
Q 036237 131 GAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDD--KDL---VSWNCL----------- 194 (689)
Q Consensus 131 ~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~~~---~~~~~l----------- 194 (689)
.+...|++++|...++++++.. +.+...+..|...|.+.|++++|+..|++..+ |+. ..|..+
T Consensus 278 ~~~~~g~~~~A~~~l~~aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~ 356 (1157)
T PRK11447 278 AAVDSGQGGKAIPELQQAVRAN-PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQ 356 (1157)
T ss_pred HHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHH
Confidence 3456788888888888888775 45677888888888899999999988887654 221 123222
Q ss_pred -HHHHHhCCChHHHHHHHhhCCC--C-CcchHHHHHHHHHhCCChHHHHHHHhhcCcC---CcchHHHHHHHHHhcCCHH
Q 036237 195 -IDGYVKKGEVEVAMKLFDEMPD--R-DLFSWTCLVDGFSKCGKVEIAREIFYRMPNR---NLVSWNAMINGYMKAGDVD 267 (689)
Q Consensus 195 -i~~~~~~g~~~~A~~~~~~m~~--~-d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~ 267 (689)
...+.+.|++++|+..|++..+ | +...+..+...+...|++++|++.|+++.+. +...+..+...|. .++.+
T Consensus 357 ~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~-~~~~~ 435 (1157)
T PRK11447 357 QGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYR-QQSPE 435 (1157)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-hcCHH
Confidence 3456778889999999888865 3 4456777888888899999999999888763 2445566666664 45778
Q ss_pred HHHHHHHhcCCCC------------hHHHHHHHHHHHHcCChHHHHHHHHHhccCCCCcC-hhhHHHHHHHHHcccchhh
Q 036237 268 SACELFDDMEIRD------------LITWNSMIAGYELNGRFMEALELLETMLIGDVLPN-DATLVSALSAVAGLAVLNK 334 (689)
Q Consensus 268 ~A~~~~~~~~~~~------------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~~~~~~ 334 (689)
+|..+++.+.... ...+..+...+...|++++|++.|++.++. .|+ ...+..+...+...|++++
T Consensus 436 ~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~--~P~~~~~~~~LA~~~~~~G~~~~ 513 (1157)
T PRK11447 436 KALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLAL--DPGSVWLTYRLAQDLRQAGQRSQ 513 (1157)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHH
Confidence 8888887765321 123555677788899999999999999875 354 4456677788899999999
Q ss_pred HHHHHHHHHHhCCccchhHHhHHHhhHHhcCCHHHHHHHHHhcCCCC----h---------hhHHHHHHHHHHcCCHHHH
Q 036237 335 GRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKK----V---------GHWTAMIVGLGMHGMATQA 401 (689)
Q Consensus 335 a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~----~---------~~~~~li~~~~~~g~~~~A 401 (689)
|...++.+++.. +.+...+..+...+.+.|+.++|...++.+.... . ..+..+...+...|+.++|
T Consensus 514 A~~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA 592 (1157)
T PRK11447 514 ADALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEA 592 (1157)
T ss_pred HHHHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHH
Confidence 999999988754 3344555555666778899999999999886421 1 1123456778899999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhCC
Q 036237 402 LDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEP-TIEHYGCLVDILCRTGYLEEAKSTIESMP 480 (689)
Q Consensus 402 ~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 480 (689)
+++++. .+++...+..+...+.+.|++++|+..|+.+.+ ..| +...+..++.+|...|++++|.+.++...
T Consensus 593 ~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~---~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll 664 (1157)
T PRK11447 593 EALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLT---REPGNADARLGLIEVDIAQGDLAAARAQLAKLP 664 (1157)
T ss_pred HHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHh
Confidence 999872 234455677788899999999999999999984 345 47889999999999999999999999874
Q ss_pred -CCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCc------hhHHHHHHHHHhcCCcchHHHHHHHHH-hCCCc
Q 036237 481 -MRP-NFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTI------GCYVVLSNIYAAAGQWDKVSEVREMMK-KRGFR 551 (689)
Q Consensus 481 -~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~------~~~~~L~~~~~~~g~~~~A~~~~~~m~-~~~~~ 551 (689)
..| +..++..+..++...|++++|...++++++..|+++ ..+..++.++...|++++|...+++.. ..|+.
T Consensus 665 ~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~~~~~~ 744 (1157)
T PRK11447 665 ATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMVASGIT 744 (1157)
T ss_pred ccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCC
Confidence 344 456778888889999999999999999999876554 356667999999999999999998875 34554
Q ss_pred cC
Q 036237 552 KD 553 (689)
Q Consensus 552 ~~ 553 (689)
|.
T Consensus 745 ~~ 746 (1157)
T PRK11447 745 PT 746 (1157)
T ss_pred CC
Confidence 33
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.9e-21 Score=194.88 Aligned_cols=441 Identities=14% Similarity=0.098 Sum_probs=331.9
Q ss_pred HHHHHHHHhCCCchHHHHHHHHhHhCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhc
Q 036237 91 NLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKF 170 (689)
Q Consensus 91 ~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~ 170 (689)
..|..-..+.|++.+|.+--...-+.. +.+..+...+-..+....+.+...+--...++.. +.-..+|..+.+.+-..
T Consensus 52 l~lah~~yq~gd~~~a~~h~nmv~~~d-~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~-~q~ae~ysn~aN~~ker 129 (966)
T KOG4626|consen 52 LELAHRLYQGGDYKQAEKHCNMVGQED-PTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKN-PQGAEAYSNLANILKER 129 (966)
T ss_pred HHHHHHHHhccCHHHHHHHHhHhhccC-CCcccceeeehhhhhcccchhhhhhhhhhhhhcc-chHHHHHHHHHHHHHHh
Confidence 344445556777777776544333321 1122222222233444444444444333333332 33456777888888888
Q ss_pred CChHHHHHHHhhCCCC---CeehHHHHHHHHHhCCChHHHHHHHhhCCC--CCcchH-HHHHHHHHhCCChHHHHHHHhh
Q 036237 171 GEIDLGRRVFDAMDDK---DLVSWNCLIDGYVKKGEVEVAMKLFDEMPD--RDLFSW-TCLVDGFSKCGKVEIAREIFYR 244 (689)
Q Consensus 171 g~~~~A~~~~~~m~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~d~~~~-~~li~~~~~~g~~~~A~~~~~~ 244 (689)
|++++|...++.+.+. .+..|..+..++...|+.+.|.+.|.+..+ |+.+.. +.+....-..|++++|...|.+
T Consensus 130 g~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~lgnLlka~Grl~ea~~cYlk 209 (966)
T KOG4626|consen 130 GQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDLGNLLKAEGRLEEAKACYLK 209 (966)
T ss_pred chHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcchhHHHHhhcccchhHHHHHH
Confidence 8888888888877643 456788888888888888888888887766 443332 2344445567888888888877
Q ss_pred cCcCC---cchHHHHHHHHHhcCCHHHHHHHHHhcCCCC---hHHHHHHHHHHHHcCChHHHHHHHHHhccCCCCcC-hh
Q 036237 245 MPNRN---LVSWNAMINGYMKAGDVDSACELFDDMEIRD---LITWNSMIAGYELNGRFMEALELLETMLIGDVLPN-DA 317 (689)
Q Consensus 245 ~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~ 317 (689)
.++.. ..+|+.|...+-..|++..|+.-|++..+-| ...|-.|...|...+.+++|+..|.+.+.. .|+ ..
T Consensus 210 Ai~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~l--rpn~A~ 287 (966)
T KOG4626|consen 210 AIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNL--RPNHAV 287 (966)
T ss_pred HHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhc--CCcchh
Confidence 77633 6678888888888888888888888877544 356778888888888888888888887753 454 34
Q ss_pred hHHHHHHHHHcccchhhHHHHHHHHHHhCCccchhHHhHHHhhHHhcCCHHHHHHHHHhcCC---CChhhHHHHHHHHHH
Q 036237 318 TLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISK---KKVGHWTAMIVGLGM 394 (689)
Q Consensus 318 t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~ 394 (689)
.+..+...|...|.++.|..-+++.+... +.-+..|+.|..++-..|++.+|+..+.+... ....+.+.|...|..
T Consensus 288 a~gNla~iYyeqG~ldlAI~~Ykral~~~-P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E 366 (966)
T KOG4626|consen 288 AHGNLACIYYEQGLLDLAIDTYKRALELQ-PNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYRE 366 (966)
T ss_pred hccceEEEEeccccHHHHHHHHHHHHhcC-CCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHH
Confidence 56666667778888888888888887754 22366788899999999999999999988765 345688899999999
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCCHHHH
Q 036237 395 HGMATQALDLFNKMCRMGMKPTA-ITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPT-IEHYGCLVDILCRTGYLEEA 472 (689)
Q Consensus 395 ~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A 472 (689)
.|.+++|..+|....+ +.|.- ..++.|...|-+.|++++|+..|++.+ .+.|+ ...|+.+...|-..|+.+.|
T Consensus 367 ~~~~e~A~~ly~~al~--v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykeal---rI~P~fAda~~NmGnt~ke~g~v~~A 441 (966)
T KOG4626|consen 367 QGKIEEATRLYLKALE--VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEAL---RIKPTFADALSNMGNTYKEMGDVSAA 441 (966)
T ss_pred hccchHHHHHHHHHHh--hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHH---hcCchHHHHHHhcchHHHHhhhHHHH
Confidence 9999999999999887 67774 478999999999999999999999998 68898 68999999999999999999
Q ss_pred HHHHHhC-CCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCcchHHHH
Q 036237 473 KSTIESM-PMRPN-FVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEV 541 (689)
Q Consensus 473 ~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~~~~~g~~~~A~~~ 541 (689)
.+.+.+. .+.|. ....+.|.+.+...|++.+|+..|+.++++.||.+.+|..|+.++---.+|.+-.+.
T Consensus 442 ~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNllh~lq~vcdw~D~d~~ 512 (966)
T KOG4626|consen 442 IQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNLLHCLQIVCDWTDYDKR 512 (966)
T ss_pred HHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHHHHHHHHHhcccchHHH
Confidence 9999886 56675 447899999999999999999999999999999999999999888777777664333
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=6.6e-19 Score=199.35 Aligned_cols=500 Identities=11% Similarity=0.034 Sum_probs=314.6
Q ss_pred CCchHHHHHHHHHHHhCCCCCchHHHHHhhcccccCCCCHHHHHHHHhcccC-CCChhhHHHHHHHHHhCCCchHHHHHH
Q 036237 32 STHKETQQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQ-HPSLVLYNLLIKCYVFNQRSHEALTLF 110 (689)
Q Consensus 32 ~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~g~~~~A~~~f~~~~~-~~~~~~~~~ll~~~~~~g~~~~a~~~~ 110 (689)
++.+.+...+...++.... ++.++..|...|.+ .|+.++|+..+++... .|+-..|..++..+ +++.+|..+|
T Consensus 58 Gd~~~A~~~l~~Al~~dP~-n~~~~~~LA~~yl~--~g~~~~A~~~~~kAv~ldP~n~~~~~~La~i---~~~~kA~~~y 131 (987)
T PRK09782 58 NDEATAIREFEYIHQQVPD-NIPLTLYLAEAYRH--FGHDDRARLLLEDQLKRHPGDARLERSLAAI---PVEVKSVTTV 131 (987)
T ss_pred CCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHH--CCCHHHHHHHHHHHHhcCcccHHHHHHHHHh---ccChhHHHHH
Confidence 4577788888888776532 47888899999999 9999999999998765 44433344334333 8888999999
Q ss_pred HHhHhCCCCCCc-ccHHHHHHHH-----HhcCChHHHHHHHHHHHHhCCCCchhHHHHH-HHHHHhcCChHHHHHHHhhC
Q 036237 111 CDLLDRFLLPDN-FTLPCVIKGA-----ARLGAIKEGKQIHGLVFKLGFGFDKFVLSSL-VSMYAKFGEIDLGRRVFDAM 183 (689)
Q Consensus 111 ~~m~~~g~~p~~-~t~~~ll~~~-----~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l-i~~~~~~g~~~~A~~~~~~m 183 (689)
+++.... |+. .++..+.... .+..+.+++.+.++ .......|+..+.... ...|.+.|++++|.+++.++
T Consensus 132 e~l~~~~--P~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~-lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L 208 (987)
T PRK09782 132 EELLAQQ--KACDAVPTLRCRSEVGQNALRLAQLPVARAQLN-DATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYNEA 208 (987)
T ss_pred HHHHHhC--CCChhHHHHHHHHhhccchhhhhhHHHHHHHHH-HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHH
Confidence 9998763 433 3333332220 11222344444444 2222223334444433 66666677777777766666
Q ss_pred CCC---CeehHHHHHHHHHhC-CChHHHHHHHhhCCCCCcchHHHHHHHHHhCCChHHHHHHHhhcCc-----CC-----
Q 036237 184 DDK---DLVSWNCLIDGYVKK-GEVEVAMKLFDEMPDRDLFSWTCLVDGFSKCGKVEIAREIFYRMPN-----RN----- 249 (689)
Q Consensus 184 ~~~---~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~----- 249 (689)
.+. +..-+..|-..|.+. ++ +++..+++...+.|...+..+...+.+.|+.++|.++++++.. ++
T Consensus 209 ~k~~pl~~~~~~~L~~ay~q~l~~-~~a~al~~~~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~ 287 (987)
T PRK09782 209 RQQNTLSAAERRQWFDVLLAGQLD-DRLLALQSQGIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDAQEKSWL 287 (987)
T ss_pred HhcCCCCHHHHHHHHHHHHHhhCH-HHHHHHhchhcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCccHHHH
Confidence 542 222244444455552 44 5566665543344555666666666666666666666665542 11
Q ss_pred -------------------------cchHHHHHHHHHhcCCHHHHHHHHHhcC---------------------------
Q 036237 250 -------------------------LVSWNAMINGYMKAGDVDSACELFDDME--------------------------- 277 (689)
Q Consensus 250 -------------------------~~~~~~li~~~~~~g~~~~A~~~~~~~~--------------------------- 277 (689)
....-.+++.+.+.++++.++++.+.-+
T Consensus 288 ~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~ 367 (987)
T PRK09782 288 YLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRNKAEALRLARL 367 (987)
T ss_pred HHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccccCchhHHHHHHHH
Confidence 1111122334444444443333322110
Q ss_pred --C--C-ChHHHHHHHHHHHHcCChHHHHHHHHHhccC------------------------------------------
Q 036237 278 --I--R-DLITWNSMIAGYELNGRFMEALELLETMLIG------------------------------------------ 310 (689)
Q Consensus 278 --~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------------------------------------------ 310 (689)
. + +....-.+.-...+.|+.++|..+|++....
T Consensus 368 ~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 447 (987)
T PRK09782 368 LYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQ 447 (987)
T ss_pred HHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchh
Confidence 0 0 1111111111223344444444444443321
Q ss_pred ---------------------CCCc---ChhhHHHHHHHHHcccchhhHHHHHHHHHHhCCccchhHHhHHHhhHHhcCC
Q 036237 311 ---------------------DVLP---NDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGS 366 (689)
Q Consensus 311 ---------------------g~~p---~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~ 366 (689)
+..| +...+..+...+.. +..++|...+....... |+......+...+...|+
T Consensus 448 ~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~--Pd~~~~L~lA~al~~~Gr 524 (987)
T PRK09782 448 RQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQ--PDAWQHRAVAYQAYQVED 524 (987)
T ss_pred HHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhC--CchHHHHHHHHHHHHCCC
Confidence 0111 22223333333333 56666777666665544 343333344555568899
Q ss_pred HHHHHHHHHhcCC--CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccCcHHHHHHHHHHh
Q 036237 367 IESALTVFRAISK--KKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAI-TFIGVLNACSHAGLVNDGRRYFNMM 443 (689)
Q Consensus 367 ~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~ 443 (689)
+++|...|+++.. ++...+..+...+.+.|+.++|...|++..+.. |+.. .+..+.......|++++|...++..
T Consensus 525 ~eeAi~~~rka~~~~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~--P~~~~l~~~La~~l~~~Gr~~eAl~~~~~A 602 (987)
T PRK09782 525 YATALAAWQKISLHDMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG--LGDNALYWWLHAQRYIPGQPELALNDLTRS 602 (987)
T ss_pred HHHHHHHHHHHhccCCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CccHHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 9999999987764 344567777888889999999999999988753 4433 3334444555679999999999999
Q ss_pred HHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchh
Q 036237 444 INDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESM-PMRP-NFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGC 521 (689)
Q Consensus 444 ~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 521 (689)
. ...|+...|..+..++.+.|++++|...+++. ...| +...+..+..++...|+.++|+..++++++++|+++..
T Consensus 603 L---~l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a 679 (987)
T PRK09782 603 L---NIAPSANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPAL 679 (987)
T ss_pred H---HhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHH
Confidence 8 45678889999999999999999999999986 4556 56678888889999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCcchHHHHHHHHHhCC
Q 036237 522 YVVLSNIYAAAGQWDKVSEVREMMKKRG 549 (689)
Q Consensus 522 ~~~L~~~~~~~g~~~~A~~~~~~m~~~~ 549 (689)
+..++.+|...|++++|...+++..+..
T Consensus 680 ~~nLA~al~~lGd~~eA~~~l~~Al~l~ 707 (987)
T PRK09782 680 IRQLAYVNQRLDDMAATQHYARLVIDDI 707 (987)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 9999999999999999999999987633
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.9e-18 Score=195.62 Aligned_cols=464 Identities=13% Similarity=0.041 Sum_probs=327.1
Q ss_pred CCCHHHHHHHHhcccC--CCChhhHHHHHHHHHhCCCchHHHHHHHHhHhCCCCCCcccHHHHHHHHHhcCChHHHHHHH
Q 036237 68 INNLHYARSIFDRILQ--HPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIH 145 (689)
Q Consensus 68 ~g~~~~A~~~f~~~~~--~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~ 145 (689)
.|++++|...|+.... +.+..++..+...|.+.|++++|+..+++..+. .|+...|..++..+ ++.++|..++
T Consensus 57 ~Gd~~~A~~~l~~Al~~dP~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~l--dP~n~~~~~~La~i---~~~~kA~~~y 131 (987)
T PRK09782 57 NNDEATAIREFEYIHQQVPDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKR--HPGDARLERSLAAI---PVEVKSVTTV 131 (987)
T ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CcccHHHHHHHHHh---ccChhHHHHH
Confidence 4999999999998765 345667899999999999999999999999976 56666666655333 8889999999
Q ss_pred HHHHHhCCCCchhHHHHHHHH--------HHhcCChHHHHHHHhhCCCCC--eehHH-HHHHHHHhCCChHHHHHHHhhC
Q 036237 146 GLVFKLGFGFDKFVLSSLVSM--------YAKFGEIDLGRRVFDAMDDKD--LVSWN-CLIDGYVKKGEVEVAMKLFDEM 214 (689)
Q Consensus 146 ~~~~~~g~~~~~~~~~~li~~--------~~~~g~~~~A~~~~~~m~~~~--~~~~~-~li~~~~~~g~~~~A~~~~~~m 214 (689)
+++++.. +.+..++..+... |.+.+...++++ .+...++ ..+.. .+...|.+.|++++|++++.++
T Consensus 132 e~l~~~~-P~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~--lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L 208 (987)
T PRK09782 132 EELLAQQ-KACDAVPTLRCRSEVGQNALRLAQLPVARAQLN--DATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYNEA 208 (987)
T ss_pred HHHHHhC-CCChhHHHHHHHHhhccchhhhhhHHHHHHHHH--HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHH
Confidence 9999886 4456666666665 888777777776 3333343 43344 4489999999999999999999
Q ss_pred CCC---CcchHHHHHHHHHh-CCChHHHHHHHhhcCcCCcchHHHHHHHHHhcCCHHHHHHHHHhcCC-----CChHHH-
Q 036237 215 PDR---DLFSWTCLVDGFSK-CGKVEIAREIFYRMPNRNLVSWNAMINGYMKAGDVDSACELFDDMEI-----RDLITW- 284 (689)
Q Consensus 215 ~~~---d~~~~~~li~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~~~~~- 284 (689)
.+. +..-...+..+|.+ .++ +.+..++....+.++.+...+.+.|.+.|+.++|.+++.+++. ++..+|
T Consensus 209 ~k~~pl~~~~~~~L~~ay~q~l~~-~~a~al~~~~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~ 287 (987)
T PRK09782 209 RQQNTLSAAERRQWFDVLLAGQLD-DRLLALQSQGIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDAQEKSWL 287 (987)
T ss_pred HhcCCCCHHHHHHHHHHHHHhhCH-HHHHHHhchhcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCccHHHH
Confidence 873 33345666677887 477 8888888876667889999999999999999999999999862 111111
Q ss_pred -----------------------------HHHHHHHHHcCChHHHHHH-----------------------------HHH
Q 036237 285 -----------------------------NSMIAGYELNGRFMEALEL-----------------------------LET 306 (689)
Q Consensus 285 -----------------------------~~li~~~~~~g~~~~A~~~-----------------------------~~~ 306 (689)
-.++..+.+.++++-+.++ ++.
T Consensus 288 ~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~ 367 (987)
T PRK09782 288 YLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRNKAEALRLARL 367 (987)
T ss_pred HHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccccCchhHHHHHHHH
Confidence 1123444555555544433 222
Q ss_pred hccCCCCc-ChhhHHHHHHHHHcccchhhHHHHHHHHHH-----------------------------------------
Q 036237 307 MLIGDVLP-NDATLVSALSAVAGLAVLNKGRWMHSYIVK----------------------------------------- 344 (689)
Q Consensus 307 m~~~g~~p-~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~----------------------------------------- 344 (689)
|.+.. | +....-.+---....|+.++|.+++.....
T Consensus 368 ~y~~~--~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~ 445 (987)
T PRK09782 368 LYQQE--PANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLA 445 (987)
T ss_pred HHhcC--CCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccc
Confidence 22110 1 000000000011223333333333332221
Q ss_pred ---------------------h-CC-cc--chhHHhHHHhhHHhcCCHHHHHHHHHhcCCCChhhHHHHHHHH--HHcCC
Q 036237 345 ---------------------N-GF-VV--DGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGL--GMHGM 397 (689)
Q Consensus 345 ---------------------~-g~-~~--~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~--~~~g~ 397 (689)
. +. ++ +...+..+..++.. |+.++|...|.+.....+..++.+..++ .+.|+
T Consensus 446 ~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~Pd~~~~L~lA~al~~~Gr 524 (987)
T PRK09782 446 EQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQPDAWQHRAVAYQAYQVED 524 (987)
T ss_pred hhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhCCchHHHHHHHHHHHHCCC
Confidence 0 11 22 44555556666655 6777777766665543333445444444 57899
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHH
Q 036237 398 ATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPT-IEHYGCLVDILCRTGYLEEAKSTI 476 (689)
Q Consensus 398 ~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~ 476 (689)
+++|+..|+++... .|+...+..+..++.+.|+.++|..+++...+ ..|+ ...+..+...+.+.|++++|...+
T Consensus 525 ~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~---l~P~~~~l~~~La~~l~~~Gr~~eAl~~~ 599 (987)
T PRK09782 525 YATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQ---RGLGDNALYWWLHAQRYIPGQPELALNDL 599 (987)
T ss_pred HHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCCccHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 99999999987653 45555566677788889999999999998884 2344 334444444555669999999999
Q ss_pred HhC-CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCcchHHHHHHHHHhC
Q 036237 477 ESM-PMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKR 548 (689)
Q Consensus 477 ~~~-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~~~~~g~~~~A~~~~~~m~~~ 548 (689)
++. ...|+...|..+...+.+.|+.++|+..++++++++|+++..+..++.++...|++++|...+++..+.
T Consensus 600 ~~AL~l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l 672 (987)
T PRK09782 600 TRSLNIAPSANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKG 672 (987)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 886 467888899999999999999999999999999999999999999999999999999999999988764
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.4e-20 Score=187.14 Aligned_cols=409 Identities=15% Similarity=0.166 Sum_probs=332.1
Q ss_pred HHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhhCCCC---CeehHHHHHHHHHhCCChHH
Q 036237 130 KGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDK---DLVSWNCLIDGYVKKGEVEV 206 (689)
Q Consensus 130 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---~~~~~~~li~~~~~~g~~~~ 206 (689)
.-..+.|++++|++--..+-..+ +.+....-.+-..|....+++....--....+. -..+|..+...+-..|++++
T Consensus 56 h~~yq~gd~~~a~~h~nmv~~~d-~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~~q~ae~ysn~aN~~kerg~~~~ 134 (966)
T KOG4626|consen 56 HRLYQGGDYKQAEKHCNMVGQED-PTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKNPQGAEAYSNLANILKERGQLQD 134 (966)
T ss_pred HHHHhccCHHHHHHHHhHhhccC-CCcccceeeehhhhhcccchhhhhhhhhhhhhccchHHHHHHHHHHHHHHhchHHH
Confidence 33446788888877444333322 222233333345566666666544432222222 34578899999999999999
Q ss_pred HHHHHhhCCC--C-CcchHHHHHHHHHhCCChHHHHHHHhhcCcCCcchH---HHHHHHHHhcCCHHHHHHHHHhcCCC-
Q 036237 207 AMKLFDEMPD--R-DLFSWTCLVDGFSKCGKVEIAREIFYRMPNRNLVSW---NAMINGYMKAGDVDSACELFDDMEIR- 279 (689)
Q Consensus 207 A~~~~~~m~~--~-d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~li~~~~~~g~~~~A~~~~~~~~~~- 279 (689)
|+.+++.+.+ | ....|..+..++...|+.+.|.+.|...++-++..+ +.+.+.....|++++|...+-+..+.
T Consensus 135 al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~lgnLlka~Grl~ea~~cYlkAi~~q 214 (966)
T KOG4626|consen 135 ALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDLGNLLKAEGRLEEAKACYLKAIETQ 214 (966)
T ss_pred HHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcchhHHHHhhcccchhHHHHHHHHhhC
Confidence 9999999976 3 457899999999999999999999999988665433 45667778889999999988876643
Q ss_pred --ChHHHHHHHHHHHHcCChHHHHHHHHHhccCCCCcC-hhhHHHHHHHHHcccchhhHHHHHHHHHHhCCccchhHHhH
Q 036237 280 --DLITWNSMIAGYELNGRFMEALELLETMLIGDVLPN-DATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTL 356 (689)
Q Consensus 280 --~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~ 356 (689)
=.+.|+.|...+-..|+...|+..|++..+. .|+ ...|..+...+...+.++.|..-+..+.... +....++..
T Consensus 215 p~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--dP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lr-pn~A~a~gN 291 (966)
T KOG4626|consen 215 PCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--DPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLR-PNHAVAHGN 291 (966)
T ss_pred CceeeeehhcchHHhhcchHHHHHHHHHHhhcC--CCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcC-Ccchhhccc
Confidence 3478999999999999999999999999873 454 3467777778888888888888877776543 234667777
Q ss_pred HHhhHHhcCCHHHHHHHHHhcCCC---ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhccCc
Q 036237 357 LIQMYSKCGSIESALTVFRAISKK---KVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTA-ITFIGVLNACSHAGL 432 (689)
Q Consensus 357 li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~ 432 (689)
|...|..+|.++.|+..+++..+. -...|+.|..++-..|+..+|...+.+... +.|+. ...+.|...+...|.
T Consensus 292 la~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~--l~p~hadam~NLgni~~E~~~ 369 (966)
T KOG4626|consen 292 LACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALR--LCPNHADAMNNLGNIYREQGK 369 (966)
T ss_pred eEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHH--hCCccHHHHHHHHHHHHHhcc
Confidence 888999999999999999998763 356899999999999999999999999988 56774 478899999999999
Q ss_pred HHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHH-HHHHHHHHHHhcCChHHHHHHHH
Q 036237 433 VNDGRRYFNMMINDYGIEPT-IEHYGCLVDILCRTGYLEEAKSTIESM-PMRPNFV-IWMSLLSGARNHGNKDIGEYAAN 509 (689)
Q Consensus 433 ~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~ 509 (689)
+++|..+|.... .+.|. ....+.|...|...|++++|...+++. .++|+.. .++.+...|...|+...|.+.+.
T Consensus 370 ~e~A~~ly~~al---~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~A~q~y~ 446 (966)
T KOG4626|consen 370 IEEATRLYLKAL---EVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSAAIQCYT 446 (966)
T ss_pred chHHHHHHHHHH---hhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHHHHHHHH
Confidence 999999999988 46677 578899999999999999999999886 6888754 89999999999999999999999
Q ss_pred HHhhcCCCCchhHHHHHHHHHhcCCcchHHHHHHHHHh
Q 036237 510 NLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKK 547 (689)
Q Consensus 510 ~~~~~~p~~~~~~~~L~~~~~~~g~~~~A~~~~~~m~~ 547 (689)
+++.++|.-..++..|+.+|-.+|+..+|..-++...+
T Consensus 447 rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLk 484 (966)
T KOG4626|consen 447 RAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALK 484 (966)
T ss_pred HHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHc
Confidence 99999999999999999999999999999999998776
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.85 E-value=8.2e-18 Score=187.25 Aligned_cols=419 Identities=12% Similarity=-0.004 Sum_probs=245.0
Q ss_pred HHHHHHHhCCCchHHHHHHHHhHhCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcC
Q 036237 92 LLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFG 171 (689)
Q Consensus 92 ~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g 171 (689)
.....+.+.|++++|++.|++.++. .|+...|..+..++...|++++|...+..+++.. +.+...+..+..+|...|
T Consensus 132 ~~G~~~~~~~~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~~lg 208 (615)
T TIGR00990 132 EKGNKAYRNKDFNKAIKLYSKAIEC--KPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAYDGLG 208 (615)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcC
Confidence 4455566667777777777766653 4555566666666666777777777777766654 334556666666777777
Q ss_pred ChHHHHHHHhhCCCCC---eehHHHHHHHHHhCCChHHHHHHHhhCCCCCcchHHHHHHHHHhCCChHHHHHHHhhcCcC
Q 036237 172 EIDLGRRVFDAMDDKD---LVSWNCLIDGYVKKGEVEVAMKLFDEMPDRDLFSWTCLVDGFSKCGKVEIAREIFYRMPNR 248 (689)
Q Consensus 172 ~~~~A~~~~~~m~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 248 (689)
++++|..-|......+ ......++.-+........+...++.-. ++..++..+...+ .....+.+..-+....+.
T Consensus 209 ~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 286 (615)
T TIGR00990 209 KYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKP-ENLPSVTFVGNYL-QSFRPKPRPAGLEDSNEL 286 (615)
T ss_pred CHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCC-CCCCCHHHHHHHH-HHccCCcchhhhhccccc
Confidence 7777766554332111 1111111111111111122222222111 1222222222211 111111111111110000
Q ss_pred CcchHHHHHHHHHhcCCHHHHHHHHHhcCCCChHHHHHHHHH---HHHcCChHHHHHHHHHhccCC-CCcC-hhhHHHHH
Q 036237 249 NLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAG---YELNGRFMEALELLETMLIGD-VLPN-DATLVSAL 323 (689)
Q Consensus 249 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~---~~~~g~~~~A~~~~~~m~~~g-~~p~-~~t~~~ll 323 (689)
+... ...+..+... ....+++++|++.|++....+ ..|+ ...+..+.
T Consensus 287 ~~~~----------------------------~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg 338 (615)
T TIGR00990 287 DEET----------------------------GNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRG 338 (615)
T ss_pred cccc----------------------------ccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHH
Confidence 0000 0001000000 012245555555555555432 1222 22334444
Q ss_pred HHHHcccchhhHHHHHHHHHHhCCccchhHHhHHHhhHHhcCCHHHHHHHHHhcCC---CChhhHHHHHHHHHHcCCHHH
Q 036237 324 SAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISK---KKVGHWTAMIVGLGMHGMATQ 400 (689)
Q Consensus 324 ~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~ 400 (689)
..+...|++++|...+..+++.. +.....+..+...+...|++++|...|+++.. .+...|..+...|...|++++
T Consensus 339 ~~~~~~g~~~eA~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~ 417 (615)
T TIGR00990 339 TFKCLKGKHLEALADLSKSIELD-PRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQ 417 (615)
T ss_pred HHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH
Confidence 44455556666666665555442 12344556667777777888888888876654 356778888888889999999
Q ss_pred HHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC
Q 036237 401 ALDLFNKMCRMGMKPT-AITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESM 479 (689)
Q Consensus 401 A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 479 (689)
|+..|++..+ +.|+ ...+..+..++.+.|++++|+..|+...+ ..+.+...++.+..+|...|++++|.+.|++.
T Consensus 418 A~~~~~kal~--l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~--~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~A 493 (615)
T TIGR00990 418 AGKDYQKSID--LDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKK--NFPEAPDVYNYYGELLLDQNKFDEAIEKFDTA 493 (615)
T ss_pred HHHHHHHHHH--cCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 9999998887 4555 44666777888889999999999998874 22334678888999999999999999998885
Q ss_pred -CCCCC-------HH-HHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCcchHHHHHHHHHhC
Q 036237 480 -PMRPN-------FV-IWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKR 548 (689)
Q Consensus 480 -~~~p~-------~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~~~~~g~~~~A~~~~~~m~~~ 548 (689)
...|+ .. .++..+..+...|++++|...++++++++|++..++..++.+|...|++++|.+.+++..+.
T Consensus 494 l~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 494 IELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred HhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 33332 11 12222223344699999999999999999999889999999999999999999999988653
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.6e-18 Score=183.05 Aligned_cols=289 Identities=13% Similarity=0.103 Sum_probs=197.7
Q ss_pred HHhcCCHHHHHHHHHhcCCC---ChHHHHHHHHHHHHcCChHHHHHHHHHhccCCCCcC---hhhHHHHHHHHHcccchh
Q 036237 260 YMKAGDVDSACELFDDMEIR---DLITWNSMIAGYELNGRFMEALELLETMLIGDVLPN---DATLVSALSAVAGLAVLN 333 (689)
Q Consensus 260 ~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~---~~t~~~ll~a~~~~~~~~ 333 (689)
+...|++++|...|.++.+. +..+|..+...+...|++++|+.+++.+...+..++ ...+..+...+...|+++
T Consensus 45 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~ 124 (389)
T PRK11788 45 FLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLD 124 (389)
T ss_pred HHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHH
Confidence 34444555555555554422 233455555555555555555555555554321111 123444455555555555
Q ss_pred hHHHHHHHHHHhCCccchhHHhHHHhhHHhcCCHHHHHHHHHhcCCCC--------hhhHHHHHHHHHHcCCHHHHHHHH
Q 036237 334 KGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKK--------VGHWTAMIVGLGMHGMATQALDLF 405 (689)
Q Consensus 334 ~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~--------~~~~~~li~~~~~~g~~~~A~~l~ 405 (689)
.|..++..+.+.. +.+..+++.++..|.+.|++++|.+.|+.+.+.+ ...|..++..+.+.|++++|+..|
T Consensus 125 ~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 203 (389)
T PRK11788 125 RAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALL 203 (389)
T ss_pred HHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 5555555555432 2345566666777777777777777777665421 113556777788889999999999
Q ss_pred HHHHHCCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC--hhHHHHHHHHHHhcCCHHHHHHHHHhC-CC
Q 036237 406 NKMCRMGMKPT-AITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPT--IEHYGCLVDILCRTGYLEEAKSTIESM-PM 481 (689)
Q Consensus 406 ~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~~-~~ 481 (689)
+++.+. .|+ ...+..+...+.+.|++++|.++|+++... .|+ ...++.++.+|.+.|++++|...++++ ..
T Consensus 204 ~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~---~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~ 278 (389)
T PRK11788 204 KKALAA--DPQCVRASILLGDLALAQGDYAAAIEALERVEEQ---DPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE 278 (389)
T ss_pred HHHHhH--CcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH---ChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 988874 344 446777778888899999999999988842 343 456788889999999999999999886 35
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchhHHHHHHHHHh---cCCcchHHHHHHHHHhCCCccCCc
Q 036237 482 RPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAA---AGQWDKVSEVREMMKKRGFRKDPG 555 (689)
Q Consensus 482 ~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~~~~---~g~~~~A~~~~~~m~~~~~~~~~~ 555 (689)
.|+...+..++..+.+.|++++|...++++++..|+++ .+..+...+.. .|+.+++..++++|.+++++++|.
T Consensus 279 ~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~-~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 279 YPGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLR-GFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHH-HHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCC
Confidence 67777778889999999999999999999999999775 55555555543 569999999999999999999985
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=7.4e-19 Score=185.62 Aligned_cols=299 Identities=15% Similarity=0.088 Sum_probs=166.8
Q ss_pred HHHHHhCCCchHHHHHHHHhHhCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCc---hhHHHHHHHHHHhc
Q 036237 94 IKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFD---KFVLSSLVSMYAKF 170 (689)
Q Consensus 94 l~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~---~~~~~~li~~~~~~ 170 (689)
...+...|++++|+..|+++.+.+ +.+..++..+...+...|++++|..+++.+++.+..++ ..++..+...|.+.
T Consensus 42 g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~ 120 (389)
T PRK11788 42 GLNFLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKA 120 (389)
T ss_pred HHHHHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHC
Confidence 334556677777888888877653 12334666666777777777777777777766432211 23556666777777
Q ss_pred CChHHHHHHHhhCCC---CCeehHHHHHHHHHhCCChHHHHHHHhhCCCCCcchHHHHHHHHHhCCChHHHHHHHhhcCc
Q 036237 171 GEIDLGRRVFDAMDD---KDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDRDLFSWTCLVDGFSKCGKVEIAREIFYRMPN 247 (689)
Q Consensus 171 g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 247 (689)
|++++|..+|+++.+ .+..+++.++..+.+.|++++|.+.|+.+.+.+.......
T Consensus 121 g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~---------------------- 178 (389)
T PRK11788 121 GLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVE---------------------- 178 (389)
T ss_pred CCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHH----------------------
Confidence 777777777776654 2344566666666666666666666665543211000000
Q ss_pred CCcchHHHHHHHHHhcCCHHHHHHHHHhcCC---CChHHHHHHHHHHHHcCChHHHHHHHHHhccCCCCcChhhHHHHHH
Q 036237 248 RNLVSWNAMINGYMKAGDVDSACELFDDMEI---RDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALS 324 (689)
Q Consensus 248 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 324 (689)
....+..+...+.+.|++++|.+.|+++.+ .+...+..+...|.+.|++++|+++|+++...+......++..+..
T Consensus 179 -~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~ 257 (389)
T PRK11788 179 -IAHFYCELAQQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLME 257 (389)
T ss_pred -HHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHH
Confidence 001233444555556666666666665542 1344566666777777777777777777765432222234445555
Q ss_pred HHHcccchhhHHHHHHHHHHhCCccchhHHhHHHhhHHhcCCHHHHHHHHHhcCC--CChhhHHHHHHHHHH---cCCHH
Q 036237 325 AVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISK--KKVGHWTAMIVGLGM---HGMAT 399 (689)
Q Consensus 325 a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~---~g~~~ 399 (689)
++...|++++|...+..+.+.. |+...+..++..+.+.|++++|.++|+++.+ |+...++.++..+.. .|+.+
T Consensus 258 ~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~~~~~~~~~~g~~~ 335 (389)
T PRK11788 258 CYQALGDEAEGLEFLRRALEEY--PGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHRLLDYHLAEAEEGRAK 335 (389)
T ss_pred HHHHcCCHHHHHHHHHHHHHhC--CCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHHHHHhhhccCCccch
Confidence 5555555555555555554442 2333335555555566666666665555443 444455555554443 34555
Q ss_pred HHHHHHHHHHHCCCCCCHH
Q 036237 400 QALDLFNKMCRMGMKPTAI 418 (689)
Q Consensus 400 ~A~~l~~~m~~~g~~p~~~ 418 (689)
+++.+|++|.+.+++|++.
T Consensus 336 ~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 336 ESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred hHHHHHHHHHHHHHhCCCC
Confidence 6666666666555554443
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.6e-16 Score=180.21 Aligned_cols=398 Identities=9% Similarity=-0.015 Sum_probs=211.9
Q ss_pred HHHHHHHhCCCchHHHHHHHHhHhCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcC
Q 036237 92 LLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFG 171 (689)
Q Consensus 92 ~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g 171 (689)
-.+......|+.++|++++.+..... +.+...+..+..++...|++++|..+++.+++.. +.+...+..+..++.+.|
T Consensus 20 d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~l~~~g 97 (765)
T PRK10049 20 DWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGLILTLADAG 97 (765)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCC
Confidence 33445556677777777777766421 2233346666666677777777777777766653 344555666666677777
Q ss_pred ChHHHHHHHhhCCC--C-CeehHHHHHHHHHhCCChHHHHHHHhhCCC--C-CcchHHHHHHHHHhCCChHHHHHHHhhc
Q 036237 172 EIDLGRRVFDAMDD--K-DLVSWNCLIDGYVKKGEVEVAMKLFDEMPD--R-DLFSWTCLVDGFSKCGKVEIAREIFYRM 245 (689)
Q Consensus 172 ~~~~A~~~~~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~-d~~~~~~li~~~~~~g~~~~A~~~~~~~ 245 (689)
++++|...+++..+ | +.. |..+...+...|+.++|+..++++.+ | +...+..+..++...|..+.|++.++..
T Consensus 98 ~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~Al~~l~~~ 176 (765)
T PRK10049 98 QYDEALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPALGAIDDA 176 (765)
T ss_pred CHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHhC
Confidence 77777777766542 2 233 55666666666666666666666654 2 2233444455555555555565555544
Q ss_pred CcCCcchHHHHHHHHHhcCCHHHHHHHHHhcCCCChHHHHHHHHHH-----HHcCCh---HHHHHHHHHhccC-CCCcCh
Q 036237 246 PNRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGY-----ELNGRF---MEALELLETMLIG-DVLPND 316 (689)
Q Consensus 246 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~-----~~~g~~---~~A~~~~~~m~~~-g~~p~~ 316 (689)
.. .+.....+ . ......++..+ ...+++ ++|++.++.+.+. ...|+.
T Consensus 177 ~~-~p~~~~~l--------~---------------~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~ 232 (765)
T PRK10049 177 NL-TPAEKRDL--------E---------------ADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDA 232 (765)
T ss_pred CC-CHHHHHHH--------H---------------HHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCcc
Confidence 43 11100000 0 00011111111 111222 5566666666532 112221
Q ss_pred h-hHHH----HHHHHHcccchhhHHHHHHHHHHhCCc-cchhHHhHHHhhHHhcCCHHHHHHHHHhcCCCC-------hh
Q 036237 317 A-TLVS----ALSAVAGLAVLNKGRWMHSYIVKNGFV-VDGVLGTLLIQMYSKCGSIESALTVFRAISKKK-------VG 383 (689)
Q Consensus 317 ~-t~~~----ll~a~~~~~~~~~a~~i~~~~~~~g~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-------~~ 383 (689)
. .+.. .+.++...+++++|+..++.+.+.+.+ |+. ....+...|...|++++|+..|+++...+ ..
T Consensus 233 ~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~ 311 (765)
T PRK10049 233 TADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDE 311 (765)
T ss_pred chHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChH
Confidence 1 1111 122334445666666666666555421 111 11224556666666666666666654321 12
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHCC-----------CCCCH---HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCC
Q 036237 384 HWTAMIVGLGMHGMATQALDLFNKMCRMG-----------MKPTA---ITFIGVLNACSHAGLVNDGRRYFNMMINDYGI 449 (689)
Q Consensus 384 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g-----------~~p~~---~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~ 449 (689)
.+..+..++.+.|++++|+++++++.... -.|+. ..+..+...+...|++++|+..++++.. ..
T Consensus 312 ~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~--~~ 389 (765)
T PRK10049 312 ELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAY--NA 389 (765)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hC
Confidence 34445556667777777777777766531 01221 1233444556666777777777766663 22
Q ss_pred CCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCc
Q 036237 450 EPTIEHYGCLVDILCRTGYLEEAKSTIESM-PMRPN-FVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTI 519 (689)
Q Consensus 450 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 519 (689)
+.+...+..+..++...|++++|++.+++. ...|+ ...+..+...+...|++++|+..++++++..|+++
T Consensus 390 P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~ 461 (765)
T PRK10049 390 PGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQDP 461 (765)
T ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCH
Confidence 233556666666666777777777766665 23443 34555555566666677777777777777777665
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=3.3e-16 Score=177.62 Aligned_cols=390 Identities=9% Similarity=0.002 Sum_probs=250.6
Q ss_pred cHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhhCC---CCCeehHHHHHHHHHh
Q 036237 124 TLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMD---DKDLVSWNCLIDGYVK 200 (689)
Q Consensus 124 t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~ 200 (689)
-..-.+......|+.++|.+++....... +.+...+..+...+.+.|++++|..+|++.. ..+...+..+...+..
T Consensus 17 ~~~d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~ 95 (765)
T PRK10049 17 QIADWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLAD 95 (765)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 33444455556666666666666665422 3344456666666666666666666666643 2234445555556666
Q ss_pred CCChHHHHHHHhhCCC--C-CcchHHHHHHHHHhCCChHHHHHHHhhcCcCCcchHHHHHHHHHhcCCHHHHHHHHHhcC
Q 036237 201 KGEVEVAMKLFDEMPD--R-DLFSWTCLVDGFSKCGKVEIAREIFYRMPNRNLVSWNAMINGYMKAGDVDSACELFDDME 277 (689)
Q Consensus 201 ~g~~~~A~~~~~~m~~--~-d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 277 (689)
.|+.++|+..+++..+ | +.. +..+..++...|+.++|+..++++.+.+
T Consensus 96 ~g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~---------------------------- 146 (765)
T PRK10049 96 AGQYDEALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALPRA---------------------------- 146 (765)
T ss_pred CCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhC----------------------------
Confidence 6666666666665543 2 223 4455555555555555555555554311
Q ss_pred CCChHHHHHHHHHHHHcCChHHHHHHHHHhccCCCCcChh------hHHHHHHHH-----Hcccch---hhHHHHHHHHH
Q 036237 278 IRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDA------TLVSALSAV-----AGLAVL---NKGRWMHSYIV 343 (689)
Q Consensus 278 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~------t~~~ll~a~-----~~~~~~---~~a~~i~~~~~ 343 (689)
..+...+..+...+...|..++|++.++.... .|+.. .....+... ...+.+ ++|.+.++.+.
T Consensus 147 P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll 223 (765)
T PRK10049 147 PQTQQYPTEYVQALRNNRLSAPALGAIDDANL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALE 223 (765)
T ss_pred CCCHHHHHHHHHHHHHCCChHHHHHHHHhCCC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHH
Confidence 11333344444455555555555555554432 12210 001111111 111223 66777777777
Q ss_pred Hh-CCccchh--HHhH---HHhhHHhcCCHHHHHHHHHhcCCCC---hh-hHHHHHHHHHHcCCHHHHHHHHHHHHHCCC
Q 036237 344 KN-GFVVDGV--LGTL---LIQMYSKCGSIESALTVFRAISKKK---VG-HWTAMIVGLGMHGMATQALDLFNKMCRMGM 413 (689)
Q Consensus 344 ~~-g~~~~~~--~~~~---li~~~~~~g~~~~A~~~~~~~~~~~---~~-~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 413 (689)
+. ...|+.. .... .+.++...|++++|++.|+.+.+.+ +. .-..+...|...|++++|+..|+++.+..
T Consensus 224 ~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~- 302 (765)
T PRK10049 224 ALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHP- 302 (765)
T ss_pred hhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcC-
Confidence 54 2222221 1111 1234457799999999999998642 21 12225778999999999999999987643
Q ss_pred CCC-----HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcC----------CCCC---hhHHHHHHHHHHhcCCHHHHHHH
Q 036237 414 KPT-----AITFIGVLNACSHAGLVNDGRRYFNMMINDYG----------IEPT---IEHYGCLVDILCRTGYLEEAKST 475 (689)
Q Consensus 414 ~p~-----~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~----------~~p~---~~~~~~li~~~~~~g~~~~A~~~ 475 (689)
|. ......+..++...|++++|..+++.+..... -.|+ ...+..+..++...|++++|++.
T Consensus 303 -p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~ 381 (765)
T PRK10049 303 -ETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMR 381 (765)
T ss_pred -CCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 32 23456667788999999999999999985311 1123 23456788899999999999999
Q ss_pred HHhCC-CCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCcchHHHHHHHHHhC
Q 036237 476 IESMP-MRP-NFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKR 548 (689)
Q Consensus 476 ~~~~~-~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~~~~~g~~~~A~~~~~~m~~~ 548 (689)
++++. ..| +...+..+...+...|+++.|+..++++++++|+++..+..++..+...|+|++|..+++++.+.
T Consensus 382 l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~ 456 (765)
T PRK10049 382 ARELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAR 456 (765)
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 99972 334 67789999999999999999999999999999999999999999999999999999999999763
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.1e-16 Score=177.47 Aligned_cols=322 Identities=8% Similarity=0.031 Sum_probs=225.6
Q ss_pred HHHHHHHHHhCCChHHHHHHHhhCCC--C-CcchHHHHHHHHHhCCChHHHHHHHhhcCc--C-CcchHHHHHHHHHhcC
Q 036237 191 WNCLIDGYVKKGEVEVAMKLFDEMPD--R-DLFSWTCLVDGFSKCGKVEIAREIFYRMPN--R-NLVSWNAMINGYMKAG 264 (689)
Q Consensus 191 ~~~li~~~~~~g~~~~A~~~~~~m~~--~-d~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g 264 (689)
.-.++..+.+.|+.++|+.+++.... | +...+..++.++...|++++|...++++.+ | +...+..+...+...|
T Consensus 45 ~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~g 124 (656)
T PRK15174 45 IILFAIACLRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLKSK 124 (656)
T ss_pred HHHHHHHHHhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcC
Confidence 44455666667777777777666643 2 334455555566667777777777777665 2 2456666777777777
Q ss_pred CHHHHHHHHHhcCC---CChHHHHHHHHHHHHcCChHHHHHHHHHhccCCCCcChhhHHHHHHHHHcccchhhHHHHHHH
Q 036237 265 DVDSACELFDDMEI---RDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSY 341 (689)
Q Consensus 265 ~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~ 341 (689)
++++|...|++... .+...|..+...+...|++++|...++.+.... |+.......+..+...|++++|...+..
T Consensus 125 ~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~--P~~~~a~~~~~~l~~~g~~~eA~~~~~~ 202 (656)
T PRK15174 125 QYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEV--PPRGDMIATCLSFLNKSRLPEDHDLARA 202 (656)
T ss_pred CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 77777777777653 245677777777788888888888777765543 2222222222346667778888777777
Q ss_pred HHHhCCccchhHHhHHHhhHHhcCCHHHHHHHHHhcCC---CChhhHHHHHHHHHHcCCHHH----HHHHHHHHHHCCCC
Q 036237 342 IVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISK---KKVGHWTAMIVGLGMHGMATQ----ALDLFNKMCRMGMK 414 (689)
Q Consensus 342 ~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~----A~~l~~~m~~~g~~ 414 (689)
+.+....++......+...+.+.|++++|.+.|+++.. .+...+..+...|.+.|++++ |+..|++..+ ..
T Consensus 203 ~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~--l~ 280 (656)
T PRK15174 203 LLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQ--FN 280 (656)
T ss_pred HHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHh--hC
Confidence 76654334444445556777888888888888887764 355677888888888888875 7888888887 45
Q ss_pred CC-HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhCC-CCCCHHH-HHH
Q 036237 415 PT-AITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPT-IEHYGCLVDILCRTGYLEEAKSTIESMP-MRPNFVI-WMS 490 (689)
Q Consensus 415 p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~p~~~~-~~~ 490 (689)
|+ ...+..+...+...|++++|...++.... ..|+ ...+..+...|.+.|++++|...++++. ..|+... +..
T Consensus 281 P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~---l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~ 357 (656)
T PRK15174 281 SDNVRIVTLYADALIRTGQNEKAIPLLQQSLA---THPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRY 357 (656)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHH
Confidence 55 44777888888889999999999988874 3454 5667778888999999999999888763 4565544 344
Q ss_pred HHHHHHhcCChHHHHHHHHHHhhcCCCCc
Q 036237 491 LLSGARNHGNKDIGEYAANNLIKVAPDTI 519 (689)
Q Consensus 491 ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 519 (689)
+..++...|+.++|...++++++..|++.
T Consensus 358 ~a~al~~~G~~deA~~~l~~al~~~P~~~ 386 (656)
T PRK15174 358 AAAALLQAGKTSEAESVFEHYIQARASHL 386 (656)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhChhhc
Confidence 56678888999999999999999888753
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.79 E-value=2.3e-15 Score=167.69 Aligned_cols=422 Identities=12% Similarity=0.006 Sum_probs=262.4
Q ss_pred HHhhcccccCCCCHHHHHHHHhcccC-CCChhhHHHHHHHHHhCCCchHHHHHHHHhHhCCCCC-CcccHHHHHHHHHhc
Q 036237 58 RLLSLYVDPHINNLHYARSIFDRILQ-HPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLP-DNFTLPCVIKGAARL 135 (689)
Q Consensus 58 ~ll~~~~~~~~g~~~~A~~~f~~~~~-~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~ 135 (689)
.+-..|.+ .|+++.|...|++... .|+...|..+..+|.+.|++++|++.+...++.. | +...+..+..++...
T Consensus 132 ~~G~~~~~--~~~~~~Ai~~y~~al~~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~--p~~~~a~~~~a~a~~~l 207 (615)
T TIGR00990 132 EKGNKAYR--NKDFNKAIKLYSKAIECKPDPVYYSNRAACHNALGDWEKVVEDTTAALELD--PDYSKALNRRANAYDGL 207 (615)
T ss_pred HHHHHHHH--cCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHc
Confidence 34455666 7999999999998765 6788889999999999999999999999998763 4 445788888899999
Q ss_pred CChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhhCCCCCeehHHHHHHHHHhCCChHHHHHHHhhCC
Q 036237 136 GAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMP 215 (689)
Q Consensus 136 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 215 (689)
|++++|..-+..+...+-..+... ..++.-+........+...++.-+ .+..++..+.. |........+..-+..-.
T Consensus 208 g~~~eA~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~a~~~~~~~l~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 284 (615)
T TIGR00990 208 GKYADALLDLTASCIIDGFRNEQS-AQAVERLLKKFAESKAKEILETKP-ENLPSVTFVGN-YLQSFRPKPRPAGLEDSN 284 (615)
T ss_pred CCHHHHHHHHHHHHHhCCCccHHH-HHHHHHHHHHHHHHHHHHHHhcCC-CCCCCHHHHHH-HHHHccCCcchhhhhccc
Confidence 999999998877665542222222 222222222112344444444332 23344443332 322222222222122111
Q ss_pred CCCc---chHHHHHHH---HHhCCChHHHHHHHhhcCcCCcchHHHHHHHHHhcCCHHHHHHHHHhcCCCChHHHHHHHH
Q 036237 216 DRDL---FSWTCLVDG---FSKCGKVEIAREIFYRMPNRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIA 289 (689)
Q Consensus 216 ~~d~---~~~~~li~~---~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~ 289 (689)
+-+. ..+..+... ....+++++|.+.|+...+.+. ....+...|+.+..
T Consensus 285 ~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~-------------------------~~~~~a~a~~~lg~ 339 (615)
T TIGR00990 285 ELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGK-------------------------LGEKEAIALNLRGT 339 (615)
T ss_pred ccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCC-------------------------CChhhHHHHHHHHH
Confidence 1111 111111110 0122445555555544432110 00112344555555
Q ss_pred HHHHcCChHHHHHHHHHhccCCCCcC-hhhHHHHHHHHHcccchhhHHHHHHHHHHhCCccchhHHhHHHhhHHhcCCHH
Q 036237 290 GYELNGRFMEALELLETMLIGDVLPN-DATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIE 368 (689)
Q Consensus 290 ~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~ 368 (689)
.+...|++++|+..|++.+.. .|+ ...|..+...+...|++++|...+..+++.. +.+..++..+...|...|+++
T Consensus 340 ~~~~~g~~~eA~~~~~kal~l--~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~ 416 (615)
T TIGR00990 340 FKCLKGKHLEALADLSKSIEL--DPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFA 416 (615)
T ss_pred HHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHH
Confidence 566666666666666665543 233 2344555555556666666666666665543 334566777777888888888
Q ss_pred HHHHHHHhcCC---CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhH
Q 036237 369 SALTVFRAISK---KKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPT-AITFIGVLNACSHAGLVNDGRRYFNMMI 444 (689)
Q Consensus 369 ~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~ 444 (689)
+|...|++... .+...|..+...+.+.|++++|+..|++..+. .|+ ...+..+...+...|++++|+..|+...
T Consensus 417 ~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al 494 (615)
T TIGR00990 417 QAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKN--FPEAPDVYNYYGELLLDQNKFDEAIEKFDTAI 494 (615)
T ss_pred HHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 88888887764 34566777888888889999999999888763 454 5577778888888899999999988877
Q ss_pred HhcCCCCCh--------hHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHhhc
Q 036237 445 NDYGIEPTI--------EHYGCLVDILCRTGYLEEAKSTIESM-PMRPN-FVIWMSLLSGARNHGNKDIGEYAANNLIKV 514 (689)
Q Consensus 445 ~~~~~~p~~--------~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 514 (689)
. +.|+. ..++.....+...|++++|.+++++. ...|+ ...+..+...+...|++++|+..+++++++
T Consensus 495 ~---l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 495 E---LEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred h---cCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 3 33321 11222223344568999999999875 44554 457888899999999999999999999988
Q ss_pred CCCCc
Q 036237 515 APDTI 519 (689)
Q Consensus 515 ~p~~~ 519 (689)
.+...
T Consensus 572 ~~~~~ 576 (615)
T TIGR00990 572 ARTEG 576 (615)
T ss_pred hccHH
Confidence 77543
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=6.5e-16 Score=171.51 Aligned_cols=341 Identities=9% Similarity=0.001 Sum_probs=273.8
Q ss_pred hCCChHHHHHHHhhCCC------CCcchHHHHHHHHHhCCChHHHHHHHhhcCc---CCcchHHHHHHHHHhcCCHHHHH
Q 036237 200 KKGEVEVAMKLFDEMPD------RDLFSWTCLVDGFSKCGKVEIAREIFYRMPN---RNLVSWNAMINGYMKAGDVDSAC 270 (689)
Q Consensus 200 ~~g~~~~A~~~~~~m~~------~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~ 270 (689)
+..+++.-.-.|..-.+ .+......++..+.+.|+.++|..+++.... .+......++......|++++|.
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A~ 96 (656)
T PRK15174 17 KQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDAVL 96 (656)
T ss_pred hhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHHH
Confidence 44455554445555443 1334556677888999999999999998875 33566677777888899999999
Q ss_pred HHHHhcCC---CChHHHHHHHHHHHHcCChHHHHHHHHHhccCCCCcC-hhhHHHHHHHHHcccchhhHHHHHHHHHHhC
Q 036237 271 ELFDDMEI---RDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPN-DATLVSALSAVAGLAVLNKGRWMHSYIVKNG 346 (689)
Q Consensus 271 ~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g 346 (689)
..|+++.. .+...|..+...+.+.|++++|+..|+++.+. .|+ ...+..+...+...|++++|...+..+....
T Consensus 97 ~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l--~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~ 174 (656)
T PRK15174 97 QVVNKLLAVNVCQPEDVLLVASVLLKSKQYATVADLAEQAWLA--FSGNSQIFALHLRTLVLMDKELQAISLARTQAQEV 174 (656)
T ss_pred HHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC
Confidence 99999874 25678899999999999999999999999874 454 4566778888999999999999999887765
Q ss_pred CccchhHHhHHHhhHHhcCCHHHHHHHHHhcCCC----ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHH
Q 036237 347 FVVDGVLGTLLIQMYSKCGSIESALTVFRAISKK----KVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPT-AITFI 421 (689)
Q Consensus 347 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~ 421 (689)
..+. ..+..+ ..+...|++++|...++.+... +...+..+...+.+.|++++|+..|+++.+. .|+ ...+.
T Consensus 175 P~~~-~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~--~p~~~~~~~ 250 (656)
T PRK15174 175 PPRG-DMIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALAR--GLDGAALRR 250 (656)
T ss_pred CCCH-HHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCCHHHHH
Confidence 4333 333333 3478899999999999987653 2334455677889999999999999999985 454 55677
Q ss_pred HHHHHHhccCcHHH----HHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHH
Q 036237 422 GVLNACSHAGLVND----GRRYFNMMINDYGIEPT-IEHYGCLVDILCRTGYLEEAKSTIESM-PMRP-NFVIWMSLLSG 494 (689)
Q Consensus 422 ~ll~a~~~~g~~~~----a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~ 494 (689)
.+..++...|++++ |...|+.+.. ..|+ ...+..+...|.+.|++++|...+++. ...| +...+..+..+
T Consensus 251 ~Lg~~l~~~G~~~eA~~~A~~~~~~Al~---l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~ 327 (656)
T PRK15174 251 SLGLAYYQSGRSREAKLQAAEHWRHALQ---FNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARA 327 (656)
T ss_pred HHHHHHHHcCCchhhHHHHHHHHHHHHh---hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 78889999999986 8999999983 4555 678999999999999999999999986 3445 45678888999
Q ss_pred HHhcCChHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCcchHHHHHHHHHhCC
Q 036237 495 ARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRG 549 (689)
Q Consensus 495 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~~~~~g~~~~A~~~~~~m~~~~ 549 (689)
+...|++++|+..++++++..|+++..+..++.++...|++++|...+++..+..
T Consensus 328 l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~ 382 (656)
T PRK15174 328 LRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQAR 382 (656)
T ss_pred HHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 9999999999999999999999987777778899999999999999999987643
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=2.1e-14 Score=159.78 Aligned_cols=429 Identities=11% Similarity=0.029 Sum_probs=223.7
Q ss_pred HHhCCCchHHHHHHHHhHhCCCCCCcc-cHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHH
Q 036237 97 YVFNQRSHEALTLFCDLLDRFLLPDNF-TLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDL 175 (689)
Q Consensus 97 ~~~~g~~~~a~~~~~~m~~~g~~p~~~-t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~ 175 (689)
..+.|++..|++.|++..+. .|+.. ....++..+...|+.++|..++++.+... .........+...|...|++++
T Consensus 44 ~~r~Gd~~~Al~~L~qaL~~--~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~-n~~~~~llalA~ly~~~gdyd~ 120 (822)
T PRK14574 44 RARAGDTAPVLDYLQEESKA--GPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSM-NISSRGLASAARAYRNEKRWDQ 120 (822)
T ss_pred HHhCCCHHHHHHHHHHHHhh--CccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCC-CCCHHHHHHHHHHHHHcCCHHH
Confidence 45677777777777777765 34431 22266666667777777777777776111 1222333333556777777777
Q ss_pred HHHHHhhCCCC---CeehHHHHHHHHHhCCChHHHHHHHhhCCCC--CcchHHHHHHHHHhCCChHHHHHHHhhcCc--C
Q 036237 176 GRRVFDAMDDK---DLVSWNCLIDGYVKKGEVEVAMKLFDEMPDR--DLFSWTCLVDGFSKCGKVEIAREIFYRMPN--R 248 (689)
Q Consensus 176 A~~~~~~m~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--d~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~ 248 (689)
|.++|+++.+. |...+..++..|...++.++|++.++++... +...+..++..+...++..+|++.++++.+ |
T Consensus 121 Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~~P 200 (822)
T PRK14574 121 ALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNYMTLSYLNRATDRNYDALQASSEAVRLAP 200 (822)
T ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHHHHHHHHHHhcchHHHHHHHHHHHHHhCC
Confidence 77777777642 3445556666777777777777777777653 323332232233334445457777776665 2
Q ss_pred -CcchHHHHHHHHHhcCCHHHHHHHHHhcCCC-ChHHHHHHHHHHHHcCChHHHHHHHHHhccCCCCcChhhHHHHHHHH
Q 036237 249 -NLVSWNAMINGYMKAGDVDSACELFDDMEIR-DLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAV 326 (689)
Q Consensus 249 -~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~ 326 (689)
+...+..+.....+.|-...|.++..+-+.- +...+.-+ . .+.|.+..+.. ..|+..- -
T Consensus 201 ~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l-~-------~~~~a~~vr~a----~~~~~~~-------~ 261 (822)
T PRK14574 201 TSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQL-E-------RDAAAEQVRMA----VLPTRSE-------T 261 (822)
T ss_pred CCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHH-H-------HHHHHHHHhhc----ccccccc-------h
Confidence 2455566666666666666666666654421 11111100 0 00010100000 0000000 0
Q ss_pred HcccchhhHHHHHHHHHHh-CC-ccchhH-HhH---HHhhHHhcCCHHHHHHHHHhcCCCC--h--hhHHHHHHHHHHcC
Q 036237 327 AGLAVLNKGRWMHSYIVKN-GF-VVDGVL-GTL---LIQMYSKCGSIESALTVFRAISKKK--V--GHWTAMIVGLGMHG 396 (689)
Q Consensus 327 ~~~~~~~~a~~i~~~~~~~-g~-~~~~~~-~~~---li~~~~~~g~~~~A~~~~~~~~~~~--~--~~~~~li~~~~~~g 396 (689)
.+....+.|..-++.+... +- ++.... ..+ .+-++.+.|+..++++.|+.+.... + .+-.++.++|...+
T Consensus 262 ~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~ 341 (822)
T PRK14574 262 ERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRR 341 (822)
T ss_pred hhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcC
Confidence 0000112222222222221 11 111111 112 2234455666666666666666422 1 23345566666666
Q ss_pred CHHHHHHHHHHHHHCC-----CCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcC----------CCCC---hhHHHH
Q 036237 397 MATQALDLFNKMCRMG-----MKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYG----------IEPT---IEHYGC 458 (689)
Q Consensus 397 ~~~~A~~l~~~m~~~g-----~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~----------~~p~---~~~~~~ 458 (689)
++++|+.+|++..... ..++......|..++..++++++|..+++.+.+... -.|+ ...+..
T Consensus 342 ~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l 421 (822)
T PRK14574 342 LPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTL 421 (822)
T ss_pred CcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHH
Confidence 6666666666664422 111222244566666666666666666666653111 0122 233444
Q ss_pred HHHHHHhcCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCcc
Q 036237 459 LVDILCRTGYLEEAKSTIESMP-MRP-NFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWD 536 (689)
Q Consensus 459 li~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~~~~~g~~~ 536 (689)
++..+...|++.+|++.++++- ..| |...+..+...+...|++..|+..++.+..++|++..+...++..+...|+|+
T Consensus 422 ~a~~~~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~ 501 (822)
T PRK14574 422 LVQSLVALNDLPTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMALQEWH 501 (822)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHH
Confidence 5566666677777776666652 223 55666666666666777777777776666666766666666666666667777
Q ss_pred hHHHHHHHHHh
Q 036237 537 KVSEVREMMKK 547 (689)
Q Consensus 537 ~A~~~~~~m~~ 547 (689)
+|..+.+.+.+
T Consensus 502 ~A~~~~~~l~~ 512 (822)
T PRK14574 502 QMELLTDDVIS 512 (822)
T ss_pred HHHHHHHHHHh
Confidence 77666655544
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.76 E-value=7.8e-15 Score=155.84 Aligned_cols=523 Identities=11% Similarity=0.046 Sum_probs=352.7
Q ss_pred ccCCccchHHHHhcCCC-----chHHHHHHHHHHH--hCCCCCchHHHHHhhcccccCCCCHHHHHHHHhcccCCCChhh
Q 036237 17 QHLPSRLHWNILKFSST-----HKETQQLHALSVK--TNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVL 89 (689)
Q Consensus 17 ~~~p~~~~~~~l~~c~~-----~~~~~~~~~~~~~--~g~~~~~~~~~~ll~~~~~~~~g~~~~A~~~f~~~~~~~~~~~ 89 (689)
...|+.+.+-+-++|-. ...+..+|...+. ....||+.+... ..+.+ +|..+.|+..|.+.. +-|+..
T Consensus 158 ~~sp~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rIgig--~Cf~k--l~~~~~a~~a~~ral-qLdp~~ 232 (1018)
T KOG2002|consen 158 KQSPDNILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRIGIG--HCFWK--LGMSEKALLAFERAL-QLDPTC 232 (1018)
T ss_pred hhCCcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccchhh--hHHHh--ccchhhHHHHHHHHH-hcChhh
Confidence 34455555445566632 4556666666433 355677766543 34456 788888888887776 333322
Q ss_pred HHHHHH---HHHhCC---CchHHHHHHHHhHhCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHHhCCCC--chhHHH
Q 036237 90 YNLLIK---CYVFNQ---RSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGF--DKFVLS 161 (689)
Q Consensus 90 ~~~ll~---~~~~~g---~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~--~~~~~~ 161 (689)
-++++. .-.... .+..++.++...-... .-|+...+.|.+-+.-.|+++.+..+...++...... -...|-
T Consensus 233 v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n-~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y 311 (1018)
T KOG2002|consen 233 VSALVALGEVDLNFNDSDSYKKGVQLLQRAYKEN-NENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFY 311 (1018)
T ss_pred HHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhc-CCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHH
Confidence 222222 111222 3445555555544432 2366677777788888888888888888887765211 123466
Q ss_pred HHHHHHHhcCChHHHHHHHhhCCC--CC--eehHHHHHHHHHhCCChHHHHHHHhhCCC--C-CcchHHHHHHHHHhCC-
Q 036237 162 SLVSMYAKFGEIDLGRRVFDAMDD--KD--LVSWNCLIDGYVKKGEVEVAMKLFDEMPD--R-DLFSWTCLVDGFSKCG- 233 (689)
Q Consensus 162 ~li~~~~~~g~~~~A~~~~~~m~~--~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~-d~~~~~~li~~~~~~g- 233 (689)
-+..+|...|++++|...|.+... +| +..+--+...|.+.|+++.+...|+...+ | +..|...+...|+..+
T Consensus 312 ~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~ 391 (1018)
T KOG2002|consen 312 QLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAK 391 (1018)
T ss_pred HHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhh
Confidence 678888888999999888877654 22 23345577888888999988888888865 3 3456666666676664
Q ss_pred ---ChHHHHHHHhhcCcCC---cchHHHHHHHHHhcCC------HHHHHHHHHhc-CCCChHHHHHHHHHHHHcCChHHH
Q 036237 234 ---KVEIAREIFYRMPNRN---LVSWNAMINGYMKAGD------VDSACELFDDM-EIRDLITWNSMIAGYELNGRFMEA 300 (689)
Q Consensus 234 ---~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~------~~~A~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A 300 (689)
..+.|..++.+..++. ...|-.+..+|-...- +..|..++..- ....+...|.+...+...|++++|
T Consensus 392 ~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A 471 (1018)
T KOG2002|consen 392 KQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLEQTDPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKA 471 (1018)
T ss_pred hhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHH
Confidence 4577777777777643 4455555555544332 23344333322 234667889999999999999999
Q ss_pred HHHHHHhccC---CCCcChh-----h-HHHHHHHHHcccchhhHHHHHHHHHHhCCccchhHHhHHHhhHHhcCCHHHHH
Q 036237 301 LELLETMLIG---DVLPNDA-----T-LVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESAL 371 (689)
Q Consensus 301 ~~~~~~m~~~---g~~p~~~-----t-~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 371 (689)
...|.+.... ...+|.. | --.+....-..++.+.|.+.|..+++.... -+..|--|.-+....+...+|.
T Consensus 472 ~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~-YId~ylRl~~ma~~k~~~~ea~ 550 (1018)
T KOG2002|consen 472 LEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPG-YIDAYLRLGCMARDKNNLYEAS 550 (1018)
T ss_pred HHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCch-hHHHHHHhhHHHHhccCcHHHH
Confidence 9999988764 2233332 1 122334445677899999999999886421 1222222222333336677888
Q ss_pred HHHHhcCC---CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHhc------------cCcHHH
Q 036237 372 TVFRAISK---KKVGHWTAMIVGLGMHGMATQALDLFNKMCRMG-MKPTAITFIGVLNACSH------------AGLVND 435 (689)
Q Consensus 372 ~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~p~~~t~~~ll~a~~~------------~g~~~~ 435 (689)
..+..... .++..|+.+...|.....+..|.+-|+.....- ..+|..+..+|.+.|.. .+..++
T Consensus 551 ~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~K 630 (1018)
T KOG2002|consen 551 LLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEK 630 (1018)
T ss_pred HHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHH
Confidence 88887764 578889999989999999999998777665532 34677777777776543 345778
Q ss_pred HHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhh
Q 036237 436 GRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMP--MRPNFVIWMSLLSGARNHGNKDIGEYAANNLIK 513 (689)
Q Consensus 436 a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 513 (689)
|+++|.++.+ .-+-|...-|-+.-.++..|++.+|..+|.+.. ...+..+|..+...|...|++-.|+++|+..++
T Consensus 631 Alq~y~kvL~--~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lk 708 (1018)
T KOG2002|consen 631 ALQLYGKVLR--NDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATSDFEDVWLNLAHCYVEQGQYRLAIQMYENCLK 708 (1018)
T ss_pred HHHHHHHHHh--cCcchhhhccchhhhhhhccCchHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888874 334457777888999999999999999999873 223567899999999999999999999999988
Q ss_pred --cCCCCchhHHHHHHHHHhcCCcchHHHHHHHHHhC
Q 036237 514 --VAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKR 548 (689)
Q Consensus 514 --~~p~~~~~~~~L~~~~~~~g~~~~A~~~~~~m~~~ 548 (689)
..-+++.+...|+.++.+.|+|.+|.+........
T Consensus 709 kf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~ 745 (1018)
T KOG2002|consen 709 KFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHL 745 (1018)
T ss_pred HhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 33456788999999999999999999988766543
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.75 E-value=3.6e-14 Score=150.91 Aligned_cols=469 Identities=13% Similarity=0.094 Sum_probs=334.0
Q ss_pred HHHHHHHHhcccC--CCChhhHHHHHHHH--HhCCCchHHHHHHHHhHhCC--CCCCcccHHHHHHHHHhcCChHHHHHH
Q 036237 71 LHYARSIFDRILQ--HPSLVLYNLLIKCY--VFNQRSHEALTLFCDLLDRF--LLPDNFTLPCVIKGAARLGAIKEGKQI 144 (689)
Q Consensus 71 ~~~A~~~f~~~~~--~~~~~~~~~ll~~~--~~~g~~~~a~~~~~~m~~~g--~~p~~~t~~~ll~~~~~~~~~~~a~~~ 144 (689)
++.|.+.|.-... ++|+- -.+..++ ...+++..|+.+|...+... ..||... .+-..+.+.++.+.|+..
T Consensus 146 ~~~A~a~F~~Vl~~sp~Nil--~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rI--gig~Cf~kl~~~~~a~~a 221 (1018)
T KOG2002|consen 146 MDDADAQFHFVLKQSPDNIL--ALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRI--GIGHCFWKLGMSEKALLA 221 (1018)
T ss_pred HHHHHHHHHHHHhhCCcchH--HHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccc--hhhhHHHhccchhhHHHH
Confidence 5777777776653 23332 2333333 45678999999999876532 3344432 222344578888899999
Q ss_pred HHHHHHhCCCCchhHHHHHHHHHHhcCC---hHHHHHHHhhCC---CCCeehHHHHHHHHHhCCChHHHHHHHhhCCCCC
Q 036237 145 HGLVFKLGFGFDKFVLSSLVSMYAKFGE---IDLGRRVFDAMD---DKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDRD 218 (689)
Q Consensus 145 ~~~~~~~g~~~~~~~~~~li~~~~~~g~---~~~A~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~d 218 (689)
|.++.+.. +-++.++-.|.-+-....+ +..+..++...- ..|++..+.|..-|.-.|+++.+..+...+....
T Consensus 222 ~~ralqLd-p~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t 300 (1018)
T KOG2002|consen 222 FERALQLD-PTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNT 300 (1018)
T ss_pred HHHHHhcC-hhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhh
Confidence 98888775 2333344444333333343 344444444332 3578889999999999999999999988876532
Q ss_pred ------cchHHHHHHHHHhCCChHHHHHHHhhcCcCC----cchHHHHHHHHHhcCCHHHHHHHHHhcCCC---ChHHHH
Q 036237 219 ------LFSWTCLVDGFSKCGKVEIAREIFYRMPNRN----LVSWNAMINGYMKAGDVDSACELFDDMEIR---DLITWN 285 (689)
Q Consensus 219 ------~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~ 285 (689)
..+|--+..+|-..|++++|...|.+..+.+ +..+-.|..+|.+.|+++.|...|+.+.+. +..+..
T Consensus 301 ~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~ 380 (1018)
T KOG2002|consen 301 ENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMK 380 (1018)
T ss_pred hhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHH
Confidence 2468889999999999999999999888633 445667899999999999999999998743 556777
Q ss_pred HHHHHHHHcC----ChHHHHHHHHHhccCCCCcChhhHHHHHHHHHcccchhhHHHHHHH----HHHhCCccchhHHhHH
Q 036237 286 SMIAGYELNG----RFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSY----IVKNGFVVDGVLGTLL 357 (689)
Q Consensus 286 ~li~~~~~~g----~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~----~~~~g~~~~~~~~~~l 357 (689)
.|...|+..+ ..++|..++.+..+.- +-|...|..+...+.. +++.....++.. +...+-.+.+.+.|.+
T Consensus 381 iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e~-~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNv 458 (1018)
T KOG2002|consen 381 ILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLEQ-TDPWASLDAYGNALDILESKGKQIPPEVLNNV 458 (1018)
T ss_pred HHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHh-cChHHHHHHHHHHHHHHHHcCCCCCHHHHHhH
Confidence 7778887775 4566666666665432 3345555555554433 333333444443 3455666788999999
Q ss_pred HhhHHhcCCHHHHHHHHHhcCCC-------Ch------hhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH-HHHHH
Q 036237 358 IQMYSKCGSIESALTVFRAISKK-------KV------GHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAI-TFIGV 423 (689)
Q Consensus 358 i~~~~~~g~~~~A~~~~~~~~~~-------~~------~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~l 423 (689)
...+...|++++|...|...... |. .+-..+...+-..++.+.|.++|..... ..|+-+ .|..+
T Consensus 459 aslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilk--ehp~YId~ylRl 536 (1018)
T KOG2002|consen 459 ASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILK--EHPGYIDAYLRL 536 (1018)
T ss_pred HHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHH--HCchhHHHHHHh
Confidence 99999999999999999877542 22 1233356667778899999999999988 467765 46666
Q ss_pred HHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHH----hCCCCCCHHHHHHHHHHHHhc-
Q 036237 424 LNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIE----SMPMRPNFVIWMSLLSGARNH- 498 (689)
Q Consensus 424 l~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~----~~~~~p~~~~~~~ll~~~~~~- 498 (689)
+......+...+|...+..... ....++..++.+.+.+.+...+.-|.+-|. +....+|..+..+|.+.|...
T Consensus 537 ~~ma~~k~~~~ea~~~lk~~l~--~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l 614 (1018)
T KOG2002|consen 537 GCMARDKNNLYEASLLLKDALN--IDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQAL 614 (1018)
T ss_pred hHHHHhccCcHHHHHHHHHHHh--cccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHh
Confidence 5444456788999999998885 455666677778889988888888887444 434457888888888866432
Q ss_pred -----------CChHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCcchHHHHHHHHHhCCC
Q 036237 499 -----------GNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGF 550 (689)
Q Consensus 499 -----------g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~~~~~g~~~~A~~~~~~m~~~~~ 550 (689)
+..+.|+++|.++++.+|.|..+-+.++-+++..|+|.+|..+|.+..+...
T Consensus 615 ~~~~rn~ek~kk~~~KAlq~y~kvL~~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~ 677 (1018)
T KOG2002|consen 615 HNPSRNPEKEKKHQEKALQLYGKVLRNDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATS 677 (1018)
T ss_pred cccccChHHHHHHHHHHHHHHHHHHhcCcchhhhccchhhhhhhccCchHHHHHHHHHHHHHh
Confidence 3567889999999999999998999999999999999999999999998665
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=8.2e-14 Score=155.11 Aligned_cols=440 Identities=11% Similarity=0.035 Sum_probs=291.6
Q ss_pred HHHHHhhcccccCCCCHHHHHHHHhcccC-CCChh-hHHHHHHHHHhCCCchHHHHHHHHhHhCCCCCCcccH-HHH--H
Q 036237 55 ISSRLLSLYVDPHINNLHYARSIFDRILQ-HPSLV-LYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTL-PCV--I 129 (689)
Q Consensus 55 ~~~~ll~~~~~~~~g~~~~A~~~f~~~~~-~~~~~-~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~-~~l--l 129 (689)
.+...|-.+ + .|++..|+..|++..+ .|+.. ....++..+...|+.++|+..+++.. .|+...+ ..+ .
T Consensus 37 ~y~~aii~~-r--~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~----~p~n~~~~~llalA 109 (822)
T PRK14574 37 QYDSLIIRA-R--AGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQ----SSMNISSRGLASAA 109 (822)
T ss_pred HHHHHHHHH-h--CCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhc----cCCCCCHHHHHHHH
Confidence 345555444 4 6999999999999874 45531 23388888999999999999999987 3433333 333 4
Q ss_pred HHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhhCCCCCeehHHHHHHHHHh--CCChHHH
Q 036237 130 KGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVK--KGEVEVA 207 (689)
Q Consensus 130 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~--~g~~~~A 207 (689)
..+...|+++.|.++++.+++.. +.+...+..++..|...++.++|++.++++...++.....+..+|.. .++..+|
T Consensus 110 ~ly~~~gdyd~Aiely~kaL~~d-P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~l~layL~~~~~~~~~A 188 (822)
T PRK14574 110 RAYRNEKRWDQALALWQSSLKKD-PTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNYMTLSYLNRATDRNYDA 188 (822)
T ss_pred HHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHHHHHHHHHHhcchHHHH
Confidence 46778899999999999999986 45567778889999999999999999999987555443334445555 5566569
Q ss_pred HHHHhhCCC--C-CcchHHHHHHHHHhCCChHHHHHHHhhcCcCCcchHHHHHHHHHhcCCHHHHHHHHHhcCCCChHHH
Q 036237 208 MKLFDEMPD--R-DLFSWTCLVDGFSKCGKVEIAREIFYRMPNRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITW 284 (689)
Q Consensus 208 ~~~~~~m~~--~-d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~ 284 (689)
++.++++.+ | +...+..+..++.+.|-...|.++..+-.. ..+-...... +.+.|.+..+....++.
T Consensus 189 L~~~ekll~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~--~f~~~~~~~l-----~~~~~a~~vr~a~~~~~--- 258 (822)
T PRK14574 189 LQASSEAVRLAPTSEEVLKNHLEILQRNRIVEPALRLAKENPN--LVSAEHYRQL-----ERDAAAEQVRMAVLPTR--- 258 (822)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCcc--ccCHHHHHHH-----HHHHHHHHHhhcccccc---
Confidence 999999976 4 456678888999999999999988776442 1111100000 01111111111100000
Q ss_pred HHHHHHHHHcCC---hHHHHHHHHHhcc-CCCCcCh-hhH----HHHHHHHHcccchhhHHHHHHHHHHhCCccchhHHh
Q 036237 285 NSMIAGYELNGR---FMEALELLETMLI-GDVLPND-ATL----VSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGT 355 (689)
Q Consensus 285 ~~li~~~~~~g~---~~~A~~~~~~m~~-~g~~p~~-~t~----~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~ 355 (689)
...++ .+.|+.-++.+.. .+-.|.. .-| .--+-++...++..++...++.+...+.+....+-.
T Consensus 259 -------~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~ 331 (822)
T PRK14574 259 -------SETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARR 331 (822)
T ss_pred -------cchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHH
Confidence 00001 1233333333332 1111211 111 122334555566666666666666655544445566
Q ss_pred HHHhhHHhcCCHHHHHHHHHhcCCC---------ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCC-------------C
Q 036237 356 LLIQMYSKCGSIESALTVFRAISKK---------KVGHWTAMIVGLGMHGMATQALDLFNKMCRMG-------------M 413 (689)
Q Consensus 356 ~li~~~~~~g~~~~A~~~~~~~~~~---------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-------------~ 413 (689)
++.++|...++.++|..+|+++... +......|.-+|...+++++|..+++++.+.. .
T Consensus 332 a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~p 411 (822)
T PRK14574 332 WAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEP 411 (822)
T ss_pred HHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCC
Confidence 6666666667777777666665331 22224567777778888888888888877621 1
Q ss_pred CCCHH-HHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCC-CCCC-HHHHHH
Q 036237 414 KPTAI-TFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMP-MRPN-FVIWMS 490 (689)
Q Consensus 414 ~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~p~-~~~~~~ 490 (689)
.||-. .+..++..+...|++++|++.++.+.. .-+-|......+.+++...|++.+|++.++... ..|+ ..+...
T Consensus 412 n~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~--~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~ 489 (822)
T PRK14574 412 NDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSS--TAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERA 489 (822)
T ss_pred CccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHH
Confidence 22322 334456678889999999999999984 334457888999999999999999999997763 4564 456777
Q ss_pred HHHHHHhcCChHHHHHHHHHHhhcCCCCchh
Q 036237 491 LLSGARNHGNKDIGEYAANNLIKVAPDTIGC 521 (689)
Q Consensus 491 ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 521 (689)
.+.+....+++++|..+.+.+++..|+++.+
T Consensus 490 ~~~~al~l~e~~~A~~~~~~l~~~~Pe~~~~ 520 (822)
T PRK14574 490 QAETAMALQEWHQMELLTDDVISRSPEDIPS 520 (822)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHhhCCCchhH
Confidence 8888889999999999999999999998743
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.62 E-value=5.9e-12 Score=122.25 Aligned_cols=401 Identities=11% Similarity=0.091 Sum_probs=256.8
Q ss_pred CchHHHHHHHHHHHhCCCCCchHHHHHhhc---cccc------------------------CCCCHHHHHHHHhcccCCC
Q 036237 33 THKETQQLHALSVKTNLIYHSGISSRLLSL---YVDP------------------------HINNLHYARSIFDRILQHP 85 (689)
Q Consensus 33 ~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~---~~~~------------------------~~g~~~~A~~~f~~~~~~~ 85 (689)
.+..+.-++.+|...|++.++.+.-.|+.. |-.+ +.|.+.+ -+|+..| .
T Consensus 130 EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G~vAd--L~~E~~P--K 205 (625)
T KOG4422|consen 130 EVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSGAVAD--LLFETLP--K 205 (625)
T ss_pred ccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccccccccccccHHH--HHHhhcC--C
Confidence 377788899999999988887776666543 2110 0233333 4444444 5
Q ss_pred ChhhHHHHHHHHHhCCCchHHHHHHHHhHhCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHH
Q 036237 86 SLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVS 165 (689)
Q Consensus 86 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 165 (689)
+..+|..||.++++-...+.|.++|++..+...+.+..+||.+|.+.+- ..++.+..+|+...+.||..|+|++++
T Consensus 206 T~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~----~~~K~Lv~EMisqkm~Pnl~TfNalL~ 281 (625)
T KOG4422|consen 206 TDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSY----SVGKKLVAEMISQKMTPNLFTFNALLS 281 (625)
T ss_pred CchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHh----hccHHHHHHHHHhhcCCchHhHHHHHH
Confidence 6678999999999999999999999999998888999999999987653 334889999999999999999999999
Q ss_pred HHHhcCChHHHHHHHh----hCC----CCCeehHHHHHHHHHhCCChHH-HHHHHhhCCC------------CCcchHHH
Q 036237 166 MYAKFGEIDLGRRVFD----AMD----DKDLVSWNCLIDGYVKKGEVEV-AMKLFDEMPD------------RDLFSWTC 224 (689)
Q Consensus 166 ~~~~~g~~~~A~~~~~----~m~----~~~~~~~~~li~~~~~~g~~~~-A~~~~~~m~~------------~d~~~~~~ 224 (689)
...+.|+++.|++.+- +|+ +|+..+|..+|..+.+.++..+ |..++.++.. .|...|.+
T Consensus 282 c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~ 361 (625)
T KOG4422|consen 282 CAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQS 361 (625)
T ss_pred HHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHHH
Confidence 9999999988776554 443 5888999999999988887744 4444433321 25556777
Q ss_pred HHHHHHhCCChHHHHHHHhhcCcCCcchHHHHHHHHHhcCCHHHHHHHHHhcCC--CChHHHHHHHHHHHHcCChHHHHH
Q 036237 225 LVDGFSKCGKVEIAREIFYRMPNRNLVSWNAMINGYMKAGDVDSACELFDDMEI--RDLITWNSMIAGYELNGRFMEALE 302 (689)
Q Consensus 225 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~ 302 (689)
.+..|.+..+.+.|.++.......+ + ++.|.. ....-|..+....++....+.-+.
T Consensus 362 AM~Ic~~l~d~~LA~~v~~ll~tg~---------------N-------~~~ig~~~~~~fYyr~~~~licq~es~~~~~~ 419 (625)
T KOG4422|consen 362 AMSICSSLRDLELAYQVHGLLKTGD---------------N-------WKFIGPDQHRNFYYRKFFDLICQMESIDVTLK 419 (625)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHcCC---------------c-------hhhcChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7888888888888887765443211 0 011110 112335566677777788888888
Q ss_pred HHHHhccCCCCcChhhHHHHHHHHHcccchhhHHHHHHHHHHhCCccchhHHhHHHhhHHhcCCHHHHHHHHHhcCCCCh
Q 036237 303 LLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKV 382 (689)
Q Consensus 303 ~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 382 (689)
.|+.|.-.-.-|+..+...+++|....+.++...+++..++..|.........-++..+++..- .|+.
T Consensus 420 ~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~------------hp~t 487 (625)
T KOG4422|consen 420 WYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKL------------HPLT 487 (625)
T ss_pred HHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCC------------CCCC
Confidence 8888887777788888888888888888888888888888777644433333222222222110 1111
Q ss_pred h---hHHHHHHHHHHcCCHHHH-HHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHH-
Q 036237 383 G---HWTAMIVGLGMHGMATQA-LDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYG- 457 (689)
Q Consensus 383 ~---~~~~li~~~~~~g~~~~A-~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~- 457 (689)
. -+.....-++ -++.++ ...-.+|.+....| ...+.++-.+.+.|..++|.+++..+.+...-.|.....|
T Consensus 488 p~r~Ql~~~~ak~a--ad~~e~~e~~~~R~r~~~~~~--t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnA 563 (625)
T KOG4422|consen 488 PEREQLQVAFAKCA--ADIKEAYESQPIRQRAQDWPA--TSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNA 563 (625)
T ss_pred hHHHHHHHHHHHHH--HHHHHHHHhhHHHHHhccCCh--hHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhh
Confidence 1 0111111000 011111 11222344333333 3344444455667777777777776654434344444444
Q ss_pred --HHHHHHHhcCCHHHHHHHHHhC
Q 036237 458 --CLVDILCRTGYLEEAKSTIESM 479 (689)
Q Consensus 458 --~li~~~~~~g~~~~A~~~~~~~ 479 (689)
-+++.-.+......|...++-|
T Consensus 564 m~El~d~a~~~~spsqA~~~lQ~a 587 (625)
T KOG4422|consen 564 MAELMDSAKVSNSPSQAIEVLQLA 587 (625)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHH
Confidence 3444445566666676666655
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.5e-12 Score=127.02 Aligned_cols=272 Identities=17% Similarity=0.189 Sum_probs=204.8
Q ss_pred HHHHhcCCHHHHHHHHHhcCCCChHHHH----HHH-HHHHHcC-ChHHHHHHHHHhccCCCCcChhhHHHHHHHHHcccc
Q 036237 258 NGYMKAGDVDSACELFDDMEIRDLITWN----SMI-AGYELNG-RFMEALELLETMLIGDVLPNDATLVSALSAVAGLAV 331 (689)
Q Consensus 258 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~li-~~~~~~g-~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~ 331 (689)
--|.+.|+++.|.+++.-..++|..+-. .|- --|.+.| ++.+|..+-...+... .-+....+.-.......|+
T Consensus 427 ~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd 505 (840)
T KOG2003|consen 427 GELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGD 505 (840)
T ss_pred HHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCc
Confidence 3578999999999998888766543322 222 2233333 4677777666654321 1122222222223345789
Q ss_pred hhhHHHHHHHHHHhCCccchhHHhHHHhhHHhcCCHHHHHHHHHhcCC---CChhhHHHHHHHHHHcCCHHHHHHHHHHH
Q 036237 332 LNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISK---KKVGHWTAMIVGLGMHGMATQALDLFNKM 408 (689)
Q Consensus 332 ~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m 408 (689)
+++|...+.+.+...-.-....|| +.-.+-+.|++++|+..|-++.. .++...-.+...|-...++.+|++++.+.
T Consensus 506 ~dka~~~ykeal~ndasc~ealfn-iglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~ 584 (840)
T KOG2003|consen 506 LDKAAEFYKEALNNDASCTEALFN-IGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQA 584 (840)
T ss_pred HHHHHHHHHHHHcCchHHHHHHHH-hcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHh
Confidence 999999999988765444444444 34457788999999999987764 56777777888899999999999999877
Q ss_pred HHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCC-CCCCHHH
Q 036237 409 CRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMP-MRPNFVI 487 (689)
Q Consensus 409 ~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~p~~~~ 487 (689)
... ++.|+....-|...|-+.|+-.+|.+.+-.--+ -++-+.++...|..-|....-+++|+.+|++.. ++|+..-
T Consensus 585 ~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyr--yfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~k 661 (840)
T KOG2003|consen 585 NSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYR--YFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSK 661 (840)
T ss_pred ccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhccc--ccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHH
Confidence 652 344566788888999999999999988765442 355568999999999999999999999999975 7899999
Q ss_pred HHHHHHHH-HhcCChHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCC
Q 036237 488 WMSLLSGA-RNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQ 534 (689)
Q Consensus 488 ~~~ll~~~-~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~~~~~g~ 534 (689)
|..++..| ++.|+++.|...|+......|.+..++-.|..++...|.
T Consensus 662 wqlmiasc~rrsgnyqka~d~yk~~hrkfpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 662 WQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHHHHHHHHhccccc
Confidence 99998877 567999999999999999999999999999999888775
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.61 E-value=9.1e-11 Score=119.88 Aligned_cols=525 Identities=12% Similarity=0.081 Sum_probs=393.6
Q ss_pred ccCCccchH--HHHhcCCCchHHHHHHHHHHHhCCCCCchHHHHHhhcccccCCCCHHHHHHHHhcccC--CCChhhHHH
Q 036237 17 QHLPSRLHW--NILKFSSTHKETQQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQ--HPSLVLYNL 92 (689)
Q Consensus 17 ~~~p~~~~~--~~l~~c~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~g~~~~A~~~f~~~~~--~~~~~~~~~ 92 (689)
...|.++.+ ....-=.....-+.|....+. .++.++.+|...+.. ...++|+-++.+..+ +.+...|.
T Consensus 343 r~~P~Sv~lW~kA~dLE~~~~~K~RVlRKALe-~iP~sv~LWKaAVel------E~~~darilL~rAveccp~s~dLwl- 414 (913)
T KOG0495|consen 343 RFLPTSVRLWLKAADLESDTKNKKRVLRKALE-HIPRSVRLWKAAVEL------EEPEDARILLERAVECCPQSMDLWL- 414 (913)
T ss_pred HhCCCChhhhhhHHhhhhHHHHHHHHHHHHHH-hCCchHHHHHHHHhc------cChHHHHHHHHHHHHhccchHHHHH-
Confidence 456666553 221111112333444444333 235566777666543 445568888877653 33344444
Q ss_pred HHHHHHhCCCchHHHHHHHHhHhCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHH----HhCCCCchhHHHHHHHHHH
Q 036237 93 LIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVF----KLGFGFDKFVLSSLVSMYA 168 (689)
Q Consensus 93 ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~----~~g~~~~~~~~~~li~~~~ 168 (689)
+|++..-++.|..++...++. ++-+...|.+....=-..|+.+....+.++.+ ..|+..+..-|-.=...+-
T Consensus 415 ---AlarLetYenAkkvLNkaRe~-iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e 490 (913)
T KOG0495|consen 415 ---ALARLETYENAKKVLNKAREI-IPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACE 490 (913)
T ss_pred ---HHHHHHHHHHHHHHHHHHHhh-CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHh
Confidence 556666778888888888875 55577777777666667788888777776543 4577778777777777777
Q ss_pred hcCChHHHHHHHhhCCC------CCeehHHHHHHHHHhCCChHHHHHHHhhCCC---CCcchHHHHHHHHHhCCChHHHH
Q 036237 169 KFGEIDLGRRVFDAMDD------KDLVSWNCLIDGYVKKGEVEVAMKLFDEMPD---RDLFSWTCLVDGFSKCGKVEIAR 239 (689)
Q Consensus 169 ~~g~~~~A~~~~~~m~~------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~d~~~~~~li~~~~~~g~~~~A~ 239 (689)
+.|.+-.+..+...... .--.+|+.-...|.+.+.++-|..+|....+ .+...|.-....=-..|..+.-.
T Consensus 491 ~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~ 570 (913)
T KOG0495|consen 491 DAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLE 570 (913)
T ss_pred hcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHH
Confidence 78887777777665542 2345788888999999999999999988876 24566776666666788888888
Q ss_pred HHHhhcCc---CCcchHHHHHHHHHhcCCHHHHHHHHHhcCC---CChHHHHHHHHHHHHcCChHHHHHHHHHhccCCCC
Q 036237 240 EIFYRMPN---RNLVSWNAMINGYMKAGDVDSACELFDDMEI---RDLITWNSMIAGYELNGRFMEALELLETMLIGDVL 313 (689)
Q Consensus 240 ~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 313 (689)
.+|+++.. .....|-....-+-..|++..|..++...-+ .+...|-+-+..-..+.++++|..+|.+... ..
T Consensus 571 Allqkav~~~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~--~s 648 (913)
T KOG0495|consen 571 ALLQKAVEQCPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARS--IS 648 (913)
T ss_pred HHHHHHHHhCCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhc--cC
Confidence 88888875 2345566666777888999999998887653 2567888888989999999999999999876 45
Q ss_pred cChhhHHHHHHHHHcccchhhHHHHHHHHHHhCCccchhHHhHHHhhHHhcCCHHHHHHHHHhcCC--C-ChhhHHHHHH
Q 036237 314 PNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISK--K-KVGHWTAMIV 390 (689)
Q Consensus 314 p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~ 390 (689)
|+...|.--+.---.++..++|.++++..++. ++.-...|-.+.+.+-+.++++.|.+.|..-.+ | .+..|-.|..
T Consensus 649 gTeRv~mKs~~~er~ld~~eeA~rllEe~lk~-fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLak 727 (913)
T KOG0495|consen 649 GTERVWMKSANLERYLDNVEEALRLLEEALKS-FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAK 727 (913)
T ss_pred CcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh-CCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHH
Confidence 66666665555556678899999999888775 344567888889999999999999999887665 3 4557888888
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHH
Q 036237 391 GLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLE 470 (689)
Q Consensus 391 ~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~ 470 (689)
.=-+.|+..+|..+|++..-.+ +-|...|...+..-.+.|..+.|..+..+..+ ..+.+-..|..-|.+..+.++-.
T Consensus 728 leEk~~~~~rAR~ildrarlkN-Pk~~~lwle~Ir~ElR~gn~~~a~~lmakALQ--ecp~sg~LWaEaI~le~~~~rkT 804 (913)
T KOG0495|consen 728 LEEKDGQLVRARSILDRARLKN-PKNALLWLESIRMELRAGNKEQAELLMAKALQ--ECPSSGLLWAEAIWLEPRPQRKT 804 (913)
T ss_pred HHHHhcchhhHHHHHHHHHhcC-CCcchhHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCccchhHHHHHHhccCcccch
Confidence 8888999999999999988754 34567899999999999999999999998886 45566788888999999999887
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCcchHHHHHHHHHhCCC
Q 036237 471 EAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGF 550 (689)
Q Consensus 471 ~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~~~~~g~~~~A~~~~~~m~~~~~ 550 (689)
.+.+.+++.. .|+.+..++...+-...+++.|...|+++++.+|++..++..+-..+...|.-++-.+++.+....
T Consensus 805 ks~DALkkce--~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~~~c~~~-- 880 (913)
T KOG0495|consen 805 KSIDALKKCE--HDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCETA-- 880 (913)
T ss_pred HHHHHHHhcc--CCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHHHHHHHhcc--
Confidence 7877787765 466666777777888889999999999999999999999999999999999999999999887764
Q ss_pred ccCCcccEEEECC
Q 036237 551 RKDPGSSSIEHRG 563 (689)
Q Consensus 551 ~~~~~~~~~~~~~ 563 (689)
.|.-|..|..+..
T Consensus 881 EP~hG~~W~avSK 893 (913)
T KOG0495|consen 881 EPTHGELWQAVSK 893 (913)
T ss_pred CCCCCcHHHHHhh
Confidence 3445667765443
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.57 E-value=6e-11 Score=126.01 Aligned_cols=297 Identities=16% Similarity=0.169 Sum_probs=172.2
Q ss_pred CCHHHHHHHHhcccC--CCChhhHHHHHHHHHhCCCchHHHHHHHHhHhCCCCCCcccHHHHHHHHHhcCChHHHHHHHH
Q 036237 69 NNLHYARSIFDRILQ--HPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHG 146 (689)
Q Consensus 69 g~~~~A~~~f~~~~~--~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~ 146 (689)
|++++|.+++.++.. +.+...|.+|...|-+.|+.+.++..+-...... +-|...|..+-.-....|.+++|.-.+.
T Consensus 153 g~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~ladls~~~~~i~qA~~cy~ 231 (895)
T KOG2076|consen 153 GDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLADLSEQLGNINQARYCYS 231 (895)
T ss_pred CCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHhcccHHHHHHHHH
Confidence 888888888877754 4566678888888888888888777665443332 2244667777777777788888888888
Q ss_pred HHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhhCCCCCe-ehH-------HHHHHHHHhCCChHHHHHHHhhCCC--
Q 036237 147 LVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDL-VSW-------NCLIDGYVKKGEVEVAMKLFDEMPD-- 216 (689)
Q Consensus 147 ~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~~~-------~~li~~~~~~g~~~~A~~~~~~m~~-- 216 (689)
++++.. +++....---+.+|-+.|+...|..-|.++...++ +.| -.++..+...++-+.|.+.++....
T Consensus 232 rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~ 310 (895)
T KOG2076|consen 232 RAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALSKE 310 (895)
T ss_pred HHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhc
Confidence 888776 55555555556777788888888777777654322 111 1234445555666667666666543
Q ss_pred ---CCcchHHHHHHHHHhCCChHHHHHHHhhcCc----CC----------------------------------------
Q 036237 217 ---RDLFSWTCLVDGFSKCGKVEIAREIFYRMPN----RN---------------------------------------- 249 (689)
Q Consensus 217 ---~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~----~~---------------------------------------- 249 (689)
-+...++.++..+.+...++.|......+.. ++
T Consensus 311 ~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~L 390 (895)
T KOG2076|consen 311 KDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLVHL 390 (895)
T ss_pred cccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhhhhcc
Confidence 1334566666666666666666655444332 00
Q ss_pred -----------------------cchHHHHHHHHHhcCCHHHHHHHHHhcCCC----ChHHHHHHHHHHHHcCChHHHHH
Q 036237 250 -----------------------LVSWNAMINGYMKAGDVDSACELFDDMEIR----DLITWNSMIAGYELNGRFMEALE 302 (689)
Q Consensus 250 -----------------------~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~li~~~~~~g~~~~A~~ 302 (689)
+..|.-+.++|...|++.+|.++|..+... +...|--+..+|...|..++|++
T Consensus 391 ~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e 470 (895)
T KOG2076|consen 391 KERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAIE 470 (895)
T ss_pred cccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHHH
Confidence 334445555555666666666666555432 44455555666666666666666
Q ss_pred HHHHhccCCCCcChh-hHHHHHHHHHcccchhhHHHHHHHHH--------HhCCccchhHHhHHHhhHHhcCCHHH
Q 036237 303 LLETMLIGDVLPNDA-TLVSALSAVAGLAVLNKGRWMHSYIV--------KNGFVVDGVLGTLLIQMYSKCGSIES 369 (689)
Q Consensus 303 ~~~~m~~~g~~p~~~-t~~~ll~a~~~~~~~~~a~~i~~~~~--------~~g~~~~~~~~~~li~~~~~~g~~~~ 369 (689)
.|+..+.. .|+.. .-.++-..+.+.|+.++|.+.+..+. ..+..|+..+.....+.|.+.|+.++
T Consensus 471 ~y~kvl~~--~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~ 544 (895)
T KOG2076|consen 471 FYEKVLIL--APDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREE 544 (895)
T ss_pred HHHHHHhc--CCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHH
Confidence 66555542 23222 22333344455555665555555522 22233334444444444555555443
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.56 E-value=8.2e-11 Score=114.47 Aligned_cols=407 Identities=13% Similarity=0.094 Sum_probs=254.0
Q ss_pred hhhHHHHHHHHHhCCCchHHHHHHHHhHhCCCCCCcccHHHHHHHHH--hcCChHH-HHHHHHHHHHhCCCCchhHHHHH
Q 036237 87 LVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAA--RLGAIKE-GKQIHGLVFKLGFGFDKFVLSSL 163 (689)
Q Consensus 87 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~--~~~~~~~-a~~~~~~~~~~g~~~~~~~~~~l 163 (689)
+++=|.|+... ..|....+.-+|+.|...|+..+...--.|++..+ ...++-- -.+.|-.|.+.| +.+..+|
T Consensus 116 V~~E~nL~kmI-S~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~-E~S~~sW--- 190 (625)
T KOG4422|consen 116 VETENNLLKMI-SSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFG-EDSTSSW--- 190 (625)
T ss_pred hcchhHHHHHH-hhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccc-ccccccc---
Confidence 44566766654 46788899999999999998777766555555433 2222222 123344454444 3333444
Q ss_pred HHHHHhcCChHHHHHHHhhCCCCCeehHHHHHHHHHhCCChHHHHHHHhhCCC----CCcchHHHHHHHHHhCCChHHHH
Q 036237 164 VSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPD----RDLFSWTCLVDGFSKCGKVEIAR 239 (689)
Q Consensus 164 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~d~~~~~~li~~~~~~g~~~~A~ 239 (689)
|.|++.+ ++-+...+...++..||.|.++-...+.|.+++++-.. -+..+||.+|.+-+-... .
T Consensus 191 -----K~G~vAd---L~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~----K 258 (625)
T KOG4422|consen 191 -----KSGAVAD---LLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVG----K 258 (625)
T ss_pred -----ccccHHH---HHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhcc----H
Confidence 4455544 44444455677899999999999999999999998865 366788888877554433 4
Q ss_pred HHHhhcC----cCCcchHHHHHHHHHhcCCHHHHHHH----HHhcC----CCChHHHHHHHHHHHHcCChHH-HHHHHHH
Q 036237 240 EIFYRMP----NRNLVSWNAMINGYMKAGDVDSACEL----FDDME----IRDLITWNSMIAGYELNGRFME-ALELLET 306 (689)
Q Consensus 240 ~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~----~~~~~----~~~~~~~~~li~~~~~~g~~~~-A~~~~~~ 306 (689)
++..+|. .||..++|+++....+.|+++.|.+. +.+|+ +|...+|..+|..+.+.+++.+ |..+..+
T Consensus 259 ~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~d 338 (625)
T KOG4422|consen 259 KLVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWIND 338 (625)
T ss_pred HHHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHH
Confidence 5555554 58999999999999999988876554 44454 5678899999999988888754 4444444
Q ss_pred hc----cCCCCc----ChhhHHHHHHHHHcccchhhHHHHHHHHHHhC----Cccc---hhHHhHHHhhHHhcCCHHHHH
Q 036237 307 ML----IGDVLP----NDATLVSALSAVAGLAVLNKGRWMHSYIVKNG----FVVD---GVLGTLLIQMYSKCGSIESAL 371 (689)
Q Consensus 307 m~----~~g~~p----~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g----~~~~---~~~~~~li~~~~~~g~~~~A~ 371 (689)
.+ ...++| |..-|.+.+..|.++.+.+.|.++++...... +.++ ..-|..+....+....++.-.
T Consensus 339 I~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~ 418 (625)
T KOG4422|consen 339 IQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTL 418 (625)
T ss_pred HHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 43 333333 34457788899999999999999988765321 1222 344556777778888888888
Q ss_pred HHHHhcCC----CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC---------cHH----
Q 036237 372 TVFRAISK----KKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAG---------LVN---- 434 (689)
Q Consensus 372 ~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g---------~~~---- 434 (689)
..++.|.. ++..+-..++.+..-.|+++-.-++|..|+..|-.-+...-.-++.-+++.. .+.
T Consensus 419 ~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~a 498 (625)
T KOG4422|consen 419 KWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFA 498 (625)
T ss_pred HHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHH
Confidence 88888765 4555556667777777777777777777776663333333222332222221 000
Q ss_pred -HHHHHH-------HHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-------CCCCCHHHHHHHHHHHHhcC
Q 036237 435 -DGRRYF-------NMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESM-------PMRPNFVIWMSLLSGARNHG 499 (689)
Q Consensus 435 -~a~~~~-------~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-------~~~p~~~~~~~ll~~~~~~g 499 (689)
-|..++ .++. .........++..-++.|.|+.++|.+++.-. +..|......-|+.+-.+.+
T Consensus 499 k~aad~~e~~e~~~~R~r---~~~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~ 575 (625)
T KOG4422|consen 499 KCAADIKEAYESQPIRQR---AQDWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSN 575 (625)
T ss_pred HHHHHHHHHHHhhHHHHH---hccCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcC
Confidence 011111 1111 22334455666667777777777777766544 22233333334444555555
Q ss_pred ChHHHHHHHHHHhh
Q 036237 500 NKDIGEYAANNLIK 513 (689)
Q Consensus 500 ~~~~a~~~~~~~~~ 513 (689)
+.-.|..+++-+..
T Consensus 576 spsqA~~~lQ~a~~ 589 (625)
T KOG4422|consen 576 SPSQAIEVLQLASA 589 (625)
T ss_pred CHHHHHHHHHHHHH
Confidence 55555555555543
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.9e-14 Score=144.00 Aligned_cols=254 Identities=15% Similarity=0.146 Sum_probs=113.0
Q ss_pred HHHHHHcCChHHHHHHHHHhccCCCCcChhhHHHHHH-HHHcccchhhHHHHHHHHHHhCCccchhHHhHHHhhHHhcCC
Q 036237 288 IAGYELNGRFMEALELLETMLIGDVLPNDATLVSALS-AVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGS 366 (689)
Q Consensus 288 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~-a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~ 366 (689)
...+.+.|++++|++++++......+|+...|..++. .+...++.+.|...++.+...+.. ++..+..++.. ...++
T Consensus 15 A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~~~ 92 (280)
T PF13429_consen 15 ARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQDGD 92 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccccc
Confidence 4455566667777776654443322344444444333 334456677777777766665433 45556666666 67888
Q ss_pred HHHHHHHHHhcCC--CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHhccCcHHHHHHHHHHh
Q 036237 367 IESALTVFRAISK--KKVGHWTAMIVGLGMHGMATQALDLFNKMCRMG-MKPTAITFIGVLNACSHAGLVNDGRRYFNMM 443 (689)
Q Consensus 367 ~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~ 443 (689)
+++|.+++...-+ ++...+..++..+.+.++++++.+++++..... .+++...|..+...+.+.|+.++|++.+++.
T Consensus 93 ~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~a 172 (280)
T PF13429_consen 93 PEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKA 172 (280)
T ss_dssp -------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred ccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 8888888876643 466678888889999999999999999987643 3455667778888899999999999999999
Q ss_pred HHhcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCch
Q 036237 444 INDYGIEPT-IEHYGCLVDILCRTGYLEEAKSTIESMP--MRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIG 520 (689)
Q Consensus 444 ~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 520 (689)
.+ ..|+ ....+.++..+...|+.+++.++++... .+.|+..|..+..++...|+.+.|...++++.+..|+|+.
T Consensus 173 l~---~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~ 249 (280)
T PF13429_consen 173 LE---LDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPL 249 (280)
T ss_dssp HH---H-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HH
T ss_pred HH---cCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccccccccccccccccccccccccc
Confidence 84 4565 7788899999999999999888877652 2346668899999999999999999999999999999999
Q ss_pred hHHHHHHHHHhcCCcchHHHHHHHHH
Q 036237 521 CYVVLSNIYAAAGQWDKVSEVREMMK 546 (689)
Q Consensus 521 ~~~~L~~~~~~~g~~~~A~~~~~~m~ 546 (689)
....++.++...|+.++|.+++.+..
T Consensus 250 ~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 250 WLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp HHHHHHHHHT----------------
T ss_pred cccccccccccccccccccccccccc
Confidence 99999999999999999999988764
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.52 E-value=6.2e-11 Score=116.66 Aligned_cols=326 Identities=12% Similarity=0.061 Sum_probs=248.9
Q ss_pred CCcchHHHHHHHHHhCCChHHHHHHHhhcCcCCcchHHHHHHHHHhcCCHHHHHHHHHhcCCCChHHHH-HHHHHHHHcC
Q 036237 217 RDLFSWTCLVDGFSKCGKVEIAREIFYRMPNRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWN-SMIAGYELNG 295 (689)
Q Consensus 217 ~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~li~~~~~~g 295 (689)
.|...+-...-.+.+.|....|+..|...+..-+..|.+-+....-.-+.+.+..+....+..+...-. .+..++....
T Consensus 162 ~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~~e~~~~l~~~l~~~~h~M~~~F~~~a~~el~ 241 (559)
T KOG1155|consen 162 KDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITDIEILSILVVGLPSDMHWMKKFFLKKAYQELH 241 (559)
T ss_pred chhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhchHHHHHHHHhcCcccchHHHHHHHHHHHHHHH
Confidence 355555555556778888999999988888777777877777766666777766666555543322222 2345666667
Q ss_pred ChHHHHHHHHHhccCCCCcChhhHHHHHHHHHcccchhhHHHHHHHHHHhCCc--cchhHHhHHHhhHHhcCCHHHHHHH
Q 036237 296 RFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFV--VDGVLGTLLIQMYSKCGSIESALTV 373 (689)
Q Consensus 296 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~--~~~~~~~~li~~~~~~g~~~~A~~~ 373 (689)
+.++++.-.+.....|+..+...-+....+.-...++++|+.+|+.+.+...- .|..+|+.++-.--.+.++.--.+.
T Consensus 242 q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~LA~~ 321 (559)
T KOG1155|consen 242 QHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYLAQN 321 (559)
T ss_pred HHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHHHHH
Confidence 88888888888888887666665555666667788999999999999987431 2456666655333332233222222
Q ss_pred HHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCC-
Q 036237 374 FRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAI-TFIGVLNACSHAGLVNDGRRYFNMMINDYGIEP- 451 (689)
Q Consensus 374 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p- 451 (689)
.-.+.+-.+.|...+.+-|+-.++.++|...|++..+ +.|... .|+.+..-|....+...|.+.++.++ .+.|
T Consensus 322 v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALk--LNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAv---di~p~ 396 (559)
T KOG1155|consen 322 VSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALK--LNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAV---DINPR 396 (559)
T ss_pred HHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHh--cCcchhHHHHHhhHHHHHhcccHHHHHHHHHHH---hcCch
Confidence 2233334556777788888999999999999999998 566644 67777788999999999999999998 3445
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchhHHHHHHHH
Q 036237 452 TIEHYGCLVDILCRTGYLEEAKSTIESM-PMRP-NFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIY 529 (689)
Q Consensus 452 ~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~~ 529 (689)
|-..|-.|.++|.-.+...-|+-+|++. ..+| |...|.+|...|.+.++.++|++.|.+++.....+...|+.|+++|
T Consensus 397 DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLy 476 (559)
T KOG1155|consen 397 DYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLY 476 (559)
T ss_pred hHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHH
Confidence 5789999999999999999999999997 4666 7889999999999999999999999999998776778999999999
Q ss_pred HhcCCcchHHHHHHHHHh
Q 036237 530 AAAGQWDKVSEVREMMKK 547 (689)
Q Consensus 530 ~~~g~~~~A~~~~~~m~~ 547 (689)
.+.++.++|...+++-.+
T Consensus 477 e~l~d~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 477 EELKDLNEAAQYYEKYVE 494 (559)
T ss_pred HHHHhHHHHHHHHHHHHH
Confidence 999999999999988765
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.3e-10 Score=115.05 Aligned_cols=412 Identities=14% Similarity=0.085 Sum_probs=239.9
Q ss_pred HHHHHHHHHhCCCchHHHHHHHHhHhCCCCCC-cccHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCc-hhHHHHHHHHH
Q 036237 90 YNLLIKCYVFNQRSHEALTLFCDLLDRFLLPD-NFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFD-KFVLSSLVSMY 167 (689)
Q Consensus 90 ~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~-~~~~~~li~~~ 167 (689)
+-..-+-+.++|.+++|++.|...++. .|| +..|.....+|...|+|+++.+--...++.+ |+ +..+..-..++
T Consensus 118 lK~~GN~~f~~kkY~eAIkyY~~AI~l--~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~--P~Y~KAl~RRA~A~ 193 (606)
T KOG0547|consen 118 LKTKGNKFFRNKKYDEAIKYYTQAIEL--CPDEPIFYSNRAACYESLGDWEKVIEDCTKALELN--PDYVKALLRRASAH 193 (606)
T ss_pred HHhhhhhhhhcccHHHHHHHHHHHHhc--CCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcC--cHHHHHHHHHHHHH
Confidence 334455677889999999999999875 677 6677777788888999998888777777654 44 34666667778
Q ss_pred HhcCChHHHHHHHhhCCCCCeehHHHHHHHHHhCCChHHHHHHHhh---------CC---CCCcchHHHHHHHHHhCCCh
Q 036237 168 AKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDE---------MP---DRDLFSWTCLVDGFSKCGKV 235 (689)
Q Consensus 168 ~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~---------m~---~~d~~~~~~li~~~~~~g~~ 235 (689)
-..|++++|+.= +|-.++..++....-..-+.+++++ |. .|...+ .+.|..|...-..
T Consensus 194 E~lg~~~eal~D---------~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS-~~fi~syf~sF~~ 263 (606)
T KOG0547|consen 194 EQLGKFDEALFD---------VTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPS-ATFIASYFGSFHA 263 (606)
T ss_pred HhhccHHHHHHh---------hhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCc-HHHHHHHHhhccc
Confidence 888888877642 1222333333222222222222211 11 111111 1112222111000
Q ss_pred HHHHHHHhhcCcCCcchHHHHHHHH----Hhc-CCHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHhccC
Q 036237 236 EIAREIFYRMPNRNLVSWNAMINGY----MKA-GDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIG 310 (689)
Q Consensus 236 ~~A~~~~~~~~~~~~~~~~~li~~~----~~~-g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 310 (689)
+- ...+..+.......+..++ ... ..+..|...+.+-.. ...... ..+..+.-++..
T Consensus 264 ~~----~~~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~------~~~~~~--~~n~~d~~le~~------ 325 (606)
T KOG0547|consen 264 DP----KPLFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECL------GSESSL--SVNEIDAELEYM------ 325 (606)
T ss_pred cc----cccccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhh------hhhhhc--cccccchhHHHH------
Confidence 00 0000001111111111111 110 012222222211100 000000 000000000000
Q ss_pred CCCcChhhHHHHHHH--HHcccchhhHHHHHHHHHHhCCccchhHHhHHHhhHHhcCCHHHHHHHHHhcCC---CChhhH
Q 036237 311 DVLPNDATLVSALSA--VAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISK---KKVGHW 385 (689)
Q Consensus 311 g~~p~~~t~~~ll~a--~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~ 385 (689)
.-..++.+ ..-.|+.-.+.+-++.+++....++. .|--+..+|....+.++-.+.|+.... .++.+|
T Consensus 326 -------A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~~~~~~-lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvY 397 (606)
T KOG0547|consen 326 -------AEALLLRGTFHFLKGDSLGAQEDFDAAIKLDPAFNS-LYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVY 397 (606)
T ss_pred -------HHHHHHhhhhhhhcCCchhhhhhHHHHHhcCcccch-HHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchh
Confidence 00011111 11234455555555555554433222 244455567777777777777776654 356677
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHH
Q 036237 386 TAMIVGLGMHGMATQALDLFNKMCRMGMKPTA-ITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILC 464 (689)
Q Consensus 386 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~ 464 (689)
..-...+.-.+++++|..-|++.+. +.|+. ..|.-+--+..+.+.++++...|++.++ .++--++.|+.....+.
T Consensus 398 yHRgQm~flL~q~e~A~aDF~Kai~--L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kk--kFP~~~Evy~~fAeiLt 473 (606)
T KOG0547|consen 398 YHRGQMRFLLQQYEEAIADFQKAIS--LDPENAYAYIQLCCALYRQHKIAESMKTFEEAKK--KFPNCPEVYNLFAEILT 473 (606)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHhh--cChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hCCCCchHHHHHHHHHh
Confidence 7777777778889999999999887 56654 4677777777788899999999999986 55566889999999999
Q ss_pred hcCCHHHHHHHHHhC-CCCCC---------HHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCC
Q 036237 465 RTGYLEEAKSTIESM-PMRPN---------FVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQ 534 (689)
Q Consensus 465 ~~g~~~~A~~~~~~~-~~~p~---------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~~~~~g~ 534 (689)
..+++++|.+.++.. .+.|+ +.+--+++-.- =.+++..|+.+++++++++|....+|..|+.+-...|+
T Consensus 474 DqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~q-wk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~ 552 (606)
T KOG0547|consen 474 DQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQ-WKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGK 552 (606)
T ss_pred hHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhhc-hhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhh
Confidence 999999999999875 34443 22222222222 22899999999999999999999999999999999999
Q ss_pred cchHHHHHHHHH
Q 036237 535 WDKVSEVREMMK 546 (689)
Q Consensus 535 ~~~A~~~~~~m~ 546 (689)
.++|.++|++-.
T Consensus 553 i~eAielFEksa 564 (606)
T KOG0547|consen 553 IDEAIELFEKSA 564 (606)
T ss_pred HHHHHHHHHHHH
Confidence 999999999754
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.48 E-value=4.4e-12 Score=130.55 Aligned_cols=244 Identities=15% Similarity=0.138 Sum_probs=173.9
Q ss_pred ChHHHHHHHHHhccCCCCcChhhHHHHHHHHHcccchhhHHHHHHHHHHhCC--ccchhHHhHHHhhHHhcCCHHHHHHH
Q 036237 296 RFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGF--VVDGVLGTLLIQMYSKCGSIESALTV 373 (689)
Q Consensus 296 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~--~~~~~~~~~li~~~~~~g~~~~A~~~ 373 (689)
+..+|+..|.... ..+.-.......+..+|..++++++++.+|+.+.+... ..+..+|++.+--+-+.=.+..--+-
T Consensus 334 ~~~~A~~~~~klp-~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~ 412 (638)
T KOG1126|consen 334 NCREALNLFEKLP-SHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQD 412 (638)
T ss_pred HHHHHHHHHHhhH-HhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHH
Confidence 4567777777733 33333445556677778888888888888877766432 22455666555433322222111111
Q ss_pred HHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC
Q 036237 374 FRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKP-TAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPT 452 (689)
Q Consensus 374 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~ 452 (689)
+-.+....+.+|-++..+|.-+++.+.|++.|++..+ +.| ...+|+.+..-+.....+|.|...|+..+ + .+
T Consensus 413 Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQ--ldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al---~--~~ 485 (638)
T KOG1126|consen 413 LIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQ--LDPRFAYAYTLLGHESIATEEFDKAMKSFRKAL---G--VD 485 (638)
T ss_pred HHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhc--cCCccchhhhhcCChhhhhHHHHhHHHHHHhhh---c--CC
Confidence 2222234677899999999989999999999988887 667 46688877777778888888888888766 2 55
Q ss_pred hhHHHH---HHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchhHHHHHH
Q 036237 453 IEHYGC---LVDILCRTGYLEEAKSTIESM-PMRP-NFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSN 527 (689)
Q Consensus 453 ~~~~~~---li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~ 527 (689)
+.+|++ |.-.|.+.++++.|+-.|+++ .+.| +.+....+...+.+.|+.++|+.++++++.++|.++-.-+.-+.
T Consensus 486 ~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~ 565 (638)
T KOG1126|consen 486 PRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRAS 565 (638)
T ss_pred chhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHH
Confidence 555554 556788889999998888886 4556 56666777777888888899999999999999988888888888
Q ss_pred HHHhcCCcchHHHHHHHHHh
Q 036237 528 IYAAAGQWDKVSEVREMMKK 547 (689)
Q Consensus 528 ~~~~~g~~~~A~~~~~~m~~ 547 (689)
++...+++++|...++++++
T Consensus 566 il~~~~~~~eal~~LEeLk~ 585 (638)
T KOG1126|consen 566 ILFSLGRYVEALQELEELKE 585 (638)
T ss_pred HHHhhcchHHHHHHHHHHHH
Confidence 88888999999988888876
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.2e-09 Score=107.94 Aligned_cols=473 Identities=14% Similarity=0.140 Sum_probs=338.1
Q ss_pred CCCHHHHHHHHhcccC--CCChhhHHHHHHHHHhCCCchHHHHHHHHhHhCCCCCCcccHHHHHHHHHhcCChHHHHHHH
Q 036237 68 INNLHYARSIFDRILQ--HPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIH 145 (689)
Q Consensus 68 ~g~~~~A~~~f~~~~~--~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~ 145 (689)
.+++..|+.+|++... .++...|---+..=.++.....|..++++....=+..|..-| ..+-.=-..|++..|+++|
T Consensus 86 q~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWy-KY~ymEE~LgNi~gaRqif 164 (677)
T KOG1915|consen 86 QKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWY-KYIYMEEMLGNIAGARQIF 164 (677)
T ss_pred HHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHH-HHHHHHHHhcccHHHHHHH
Confidence 5788899999998764 577778888888888999999999999998765333343333 2223334678999999999
Q ss_pred HHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhhCC--CCCeehHHHHHHHHHhCCChHHHHHHHhhCCC--CC---
Q 036237 146 GLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMD--DKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPD--RD--- 218 (689)
Q Consensus 146 ~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~d--- 218 (689)
++-.+. .|+...|++.|++=.+-..++.|+.++++.. .|++.+|--...--.++|.+.-|..+|....+ .|
T Consensus 165 erW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~~ 242 (677)
T KOG1915|consen 165 ERWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDDEE 242 (677)
T ss_pred HHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHH
Confidence 988765 7999999999999999999999999999865 68999999999999999999999999988765 22
Q ss_pred -cchHHHHHHHHHhCCChHHHHHHHhhcCc--C-C--cchHHHHHHHHHhcCCHHHHHHH--------HHhcCCC---Ch
Q 036237 219 -LFSWTCLVDGFSKCGKVEIAREIFYRMPN--R-N--LVSWNAMINGYMKAGDVDSACEL--------FDDMEIR---DL 281 (689)
Q Consensus 219 -~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~--~~~~~~li~~~~~~g~~~~A~~~--------~~~~~~~---~~ 281 (689)
...+++....=.+...++.|.-+|.-.+. | + ...|......=-+-|+-...+.. ++.+... |-
T Consensus 243 ~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~nY 322 (677)
T KOG1915|consen 243 AEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPYNY 322 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCCCc
Confidence 23444444444456678888888877665 2 2 33444444444444553333322 2223333 45
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHhccCCCCcCh-------hhHHHHHHHH---HcccchhhHHHHHHHHHHhCCccch
Q 036237 282 ITWNSMIAGYELNGRFMEALELLETMLIGDVLPND-------ATLVSALSAV---AGLAVLNKGRWMHSYIVKNGFVVDG 351 (689)
Q Consensus 282 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-------~t~~~ll~a~---~~~~~~~~a~~i~~~~~~~g~~~~~ 351 (689)
.+|--.+..-...|+.+...++|++.... ++|-. ..|.-+=-+| ....+.+.+++++...++ -++...
T Consensus 323 DsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~-lIPHkk 400 (677)
T KOG1915|consen 323 DSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLD-LIPHKK 400 (677)
T ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh-hcCccc
Confidence 67777888888889999999999999865 55532 1222222222 356788999999999988 345566
Q ss_pred hHHhHHHhhHH----hcCCHHHHHHHHHhcCC--CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 036237 352 VLGTLLIQMYS----KCGSIESALTVFRAISK--KKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLN 425 (689)
Q Consensus 352 ~~~~~li~~~~----~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~ 425 (689)
+++.-+=-+|+ ++.++..|.+++..... |...++..-|..=.+.++++....++++.++.+ +-|..+|.....
T Consensus 401 FtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~-Pe~c~~W~kyaE 479 (677)
T KOG1915|consen 401 FTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFS-PENCYAWSKYAE 479 (677)
T ss_pred chHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-hHhhHHHHHHHH
Confidence 66666655554 68999999999988764 666788888888899999999999999999854 335667877777
Q ss_pred HHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHH-----hcC
Q 036237 426 ACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESM-PMRPNFVIWMSLLSGAR-----NHG 499 (689)
Q Consensus 426 a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~ll~~~~-----~~g 499 (689)
.-...|+.|.|+.+|+.++....+..-...|.+.|+-=...|.++.|..+++++ ...+...+|-++..--. +.+
T Consensus 480 lE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h~kvWisFA~fe~s~~~~~~~ 559 (677)
T KOG1915|consen 480 LETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQHVKVWISFAKFEASASEGQED 559 (677)
T ss_pred HHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcccchHHHhHHHHhccccccccc
Confidence 777889999999999999864333333567777888888999999999999987 23345557877765433 334
Q ss_pred -----------ChHHHHHHHHHHhh----cCCCC--chhHHHHHHHHHhcCCcchHHHHHHHHH
Q 036237 500 -----------NKDIGEYAANNLIK----VAPDT--IGCYVVLSNIYAAAGQWDKVSEVREMMK 546 (689)
Q Consensus 500 -----------~~~~a~~~~~~~~~----~~p~~--~~~~~~L~~~~~~~g~~~~A~~~~~~m~ 546 (689)
+...|..+|+++.. ..|.. ...+-.+.+.=...|...+...+-+.|.
T Consensus 560 ~~~~~~e~~~~~~~~AR~iferAn~~~k~~~~KeeR~~LLEaw~~~E~~~G~~~d~~~V~s~mP 623 (677)
T KOG1915|consen 560 EDLAELEITDENIKRARKIFERANTYLKESTPKEERLMLLEAWKNMEETFGTEGDVERVQSKMP 623 (677)
T ss_pred cchhhhhcchhHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCchhhHHHHHHhcc
Confidence 56688888888865 33321 1122333444455676666666666663
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.47 E-value=8.9e-11 Score=124.74 Aligned_cols=310 Identities=15% Similarity=0.189 Sum_probs=187.1
Q ss_pred CChHHHHHHHhhCCCC---CcchHHHHHHHHHhCCChHHHHHHHhhcC---cCCcchHHHHHHHHHhcCCHHHHHHHHHh
Q 036237 202 GEVEVAMKLFDEMPDR---DLFSWTCLVDGFSKCGKVEIAREIFYRMP---NRNLVSWNAMINGYMKAGDVDSACELFDD 275 (689)
Q Consensus 202 g~~~~A~~~~~~m~~~---d~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 275 (689)
|+.++|.+++.+..+. +...|.+|...|-+.|+.+++...+-.+. ..+...|..+.+...+.|.++.|.-.|.+
T Consensus 153 g~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~cy~r 232 (895)
T KOG2076|consen 153 GDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQARYCYSR 232 (895)
T ss_pred CCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHHHHHHH
Confidence 5555555555555431 33455555555555555555544332221 22334444444555555555555555544
Q ss_pred cCCCChHHH---HHHHHHHHHcCChHHHHHHHHHhccCCCCcChhhHHHHHHHHHcccchhhHHHHHHHHHHhCCccchh
Q 036237 276 MEIRDLITW---NSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGV 352 (689)
Q Consensus 276 ~~~~~~~~~---~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~ 352 (689)
..+.++.-| ---+..|-+.|+...|++-|.++. ....+.|..
T Consensus 233 AI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~-----------------------------------~~~p~~d~e 277 (895)
T KOG2076|consen 233 AIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLL-----------------------------------QLDPPVDIE 277 (895)
T ss_pred HHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHH-----------------------------------hhCCchhHH
Confidence 443222211 122334444455555555555544 433222222
Q ss_pred HHhH----HHhhHHhcCCHHHHHHHHHhcCC-----CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHH---
Q 036237 353 LGTL----LIQMYSKCGSIESALTVFRAISK-----KKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITF--- 420 (689)
Q Consensus 353 ~~~~----li~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~--- 420 (689)
-... .+..|...++-+.|.+.++.... -+...++.++..|.+..+++.|......+......||..-+
T Consensus 278 r~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~ 357 (895)
T KOG2076|consen 278 RIEDLIRRVAHYFITHNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTD 357 (895)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhh
Confidence 1111 23444555555666666665544 13345777777777778888887777777662222222111
Q ss_pred -------------------H----HHHHHHhccCcHHHHHHHHHHhHHhcCC--CCChhHHHHHHHHHHhcCCHHHHHHH
Q 036237 421 -------------------I----GVLNACSHAGLVNDGRRYFNMMINDYGI--EPTIEHYGCLVDILCRTGYLEEAKST 475 (689)
Q Consensus 421 -------------------~----~ll~a~~~~g~~~~a~~~~~~~~~~~~~--~p~~~~~~~li~~~~~~g~~~~A~~~ 475 (689)
. -+.-++.+....+....+..... +..+ .-++..|.-+.++|...|++.+|+.+
T Consensus 358 ~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~-~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~ 436 (895)
T KOG2076|consen 358 ERRREEPNALCEVGKELSYDLRVIRLMICLVHLKERELLEALLHFLV-EDNVWVSDDVDLYLDLADALTNIGKYKEALRL 436 (895)
T ss_pred hhccccccccccCCCCCCccchhHhHhhhhhcccccchHHHHHHHHH-HhcCChhhhHHHHHHHHHHHHhcccHHHHHHH
Confidence 1 12222333333333333333333 2243 33478899999999999999999999
Q ss_pred HHhCCCC---CCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCcchHHHHHHHHHh
Q 036237 476 IESMPMR---PNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKK 547 (689)
Q Consensus 476 ~~~~~~~---p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~~~~~g~~~~A~~~~~~m~~ 547 (689)
+..+... .+...|.-+...+...|.++.|+..|++++.+.|++..+-..|+.+|.+.|+.++|.+.++.|..
T Consensus 437 l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~ 511 (895)
T KOG2076|consen 437 LSPITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIIN 511 (895)
T ss_pred HHHHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccC
Confidence 9998422 35779999999999999999999999999999999999999999999999999999999998763
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=7.2e-11 Score=123.77 Aligned_cols=252 Identities=13% Similarity=0.012 Sum_probs=164.5
Q ss_pred HHhCCChHHHHHHHhhcCcC--CcchHH--HHHHHHHhcCCHHHHHHHHHhcCC---CChHHHHHHHHHHHHcCChHHHH
Q 036237 229 FSKCGKVEIAREIFYRMPNR--NLVSWN--AMINGYMKAGDVDSACELFDDMEI---RDLITWNSMIAGYELNGRFMEAL 301 (689)
Q Consensus 229 ~~~~g~~~~A~~~~~~~~~~--~~~~~~--~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~ 301 (689)
..+.|+.+.|...+.++.+. +...+. .....+...|+++.|...++++.+ .++.....+...|.+.|++++|+
T Consensus 128 A~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~ 207 (398)
T PRK10747 128 AQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLL 207 (398)
T ss_pred HHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHH
Confidence 35666666666666666542 221121 234566777777777777776653 25667778888888888888888
Q ss_pred HHHHHhccCCCCcChhhHHHHHHHHHcccchhhHHHHHHHHHHhCCccchhHHhHHHhhHHhcCCHHHHHHHHHhcCC--
Q 036237 302 ELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISK-- 379 (689)
Q Consensus 302 ~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-- 379 (689)
+++..+.+.+..++. ....+-. ..+..++....+..+.+...++++.++.
T Consensus 208 ~~l~~l~k~~~~~~~-~~~~l~~---------------------------~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~ 259 (398)
T PRK10747 208 DILPSMAKAHVGDEE-HRAMLEQ---------------------------QAWIGLMDQAMADQGSEGLKRWWKNQSRKT 259 (398)
T ss_pred HHHHHHHHcCCCCHH-HHHHHHH---------------------------HHHHHHHHHHHHhcCHHHHHHHHHhCCHHH
Confidence 888888876544221 1110000 0111122222223344555555555543
Q ss_pred -CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHH
Q 036237 380 -KKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGC 458 (689)
Q Consensus 380 -~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~ 458 (689)
.++.....+...+...|+.++|.+++++..+. .||... .++.+....++.+++.+..+...+ ..+-|...+.+
T Consensus 260 ~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l--~~l~~~l~~~~~~~al~~~e~~lk--~~P~~~~l~l~ 333 (398)
T PRK10747 260 RHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERL--VLLIPRLKTNNPEQLEKVLRQQIK--QHGDTPLLWST 333 (398)
T ss_pred hCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHH--HHHHhhccCCChHHHHHHHHHHHh--hCCCCHHHHHH
Confidence 46667777888888888888888888888763 444421 123344455888888888888874 23334566778
Q ss_pred HHHHHHhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhc
Q 036237 459 LVDILCRTGYLEEAKSTIESM-PMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKV 514 (689)
Q Consensus 459 li~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 514 (689)
+..++.+.|++++|.+.|++. ...|+...+..+...+...|+.++|..++++.+.+
T Consensus 334 lgrl~~~~~~~~~A~~~le~al~~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~ 390 (398)
T PRK10747 334 LGQLLMKHGEWQEASLAFRAALKQRPDAYDYAWLADALDRLHKPEEAAAMRRDGLML 390 (398)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 888888888888888888876 56688888888888888888999998888888764
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.4e-09 Score=110.07 Aligned_cols=415 Identities=13% Similarity=0.054 Sum_probs=279.4
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHh--hCCCCCeehHHHHHHHHHhCC
Q 036237 125 LPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFD--AMDDKDLVSWNCLIDGYVKKG 202 (689)
Q Consensus 125 ~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~--~m~~~~~~~~~~li~~~~~~g 202 (689)
+..+++-+....++..|.-+-+++...+.+|+ ..--+.++|.-.|+++.|..+.. .+.+.|..+.......+.+..
T Consensus 19 ~~~~~r~~l~q~~y~~a~f~adkV~~l~~dp~--d~~~~aq~l~~~~~y~ra~~lit~~~le~~d~~cryL~~~~l~~lk 96 (611)
T KOG1173|consen 19 YRRLVRDALMQHRYKTALFWADKVAGLTNDPA--DIYWLAQVLYLGRQYERAAHLITTYKLEKRDIACRYLAAKCLVKLK 96 (611)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHhccCChH--HHHHHHHHHHhhhHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHH
Confidence 34444444444555666666666655543333 33335566666677777766654 344567777777777777777
Q ss_pred ChHHHHHHHhhC----CC-----CC--------cch----HHHHH-------HHHHhCCChHHHHHHHhhcCcCCcchHH
Q 036237 203 EVEVAMKLFDEM----PD-----RD--------LFS----WTCLV-------DGFSKCGKVEIAREIFYRMPNRNLVSWN 254 (689)
Q Consensus 203 ~~~~A~~~~~~m----~~-----~d--------~~~----~~~li-------~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 254 (689)
.+++|+.++..- .. .| ..- -+.-. ..|....+.++|...|.+....++.-+.
T Consensus 97 ~~~~al~vl~~~~~~~~~f~yy~~~~~~~l~~n~~~~~~~~~~essic~lRgk~y~al~n~~~ar~~Y~~Al~~D~~c~E 176 (611)
T KOG1173|consen 97 EWDQALLVLGRGHVETNPFSYYEKDAANTLELNSAGEDLMINLESSICYLRGKVYVALDNREEARDKYKEALLADAKCFE 176 (611)
T ss_pred HHHHHHHHhcccchhhcchhhcchhhhceeccCcccccccccchhceeeeeeehhhhhccHHHHHHHHHHHHhcchhhHH
Confidence 777777777722 11 01 110 01111 1233444566777777766655544443
Q ss_pred HHHHHHHhc--------------------C-CHHHHHHHHHhc----C----------------CCChHHHHHHHHHHHH
Q 036237 255 AMINGYMKA--------------------G-DVDSACELFDDM----E----------------IRDLITWNSMIAGYEL 293 (689)
Q Consensus 255 ~li~~~~~~--------------------g-~~~~A~~~~~~~----~----------------~~~~~~~~~li~~~~~ 293 (689)
++...-... + +.+.-+.+|+-. . +.++...-....-+..
T Consensus 177 a~~~lvs~~mlt~~Ee~~ll~~l~~a~~~~ed~e~l~~lyel~~~k~~n~~~~~r~~~~sl~~l~~~~dll~~~ad~~y~ 256 (611)
T KOG1173|consen 177 AFEKLVSAHMLTAQEEFELLESLDLAMLTKEDVERLEILYELKLCKNRNEESLTRNEDESLIGLAENLDLLAEKADRLYY 256 (611)
T ss_pred HHHHHHHHHhcchhHHHHHHhcccHHhhhhhHHHHHHHHHHhhhhhhccccccccCchhhhhhhhhcHHHHHHHHHHHHH
Confidence 332221111 0 111111222211 0 1133344445556777
Q ss_pred cCChHHHHHHHHHhccCCCCcChhhHHHHHHHHHcccchhhHHHHHHHHHHhCCccchhHHhHHHhhHHhcCCHHHHHHH
Q 036237 294 NGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTV 373 (689)
Q Consensus 294 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~ 373 (689)
.+++.+.+++++...+.. ++....+..=|..+...|+..+-..+-..+++. .+..+.+|-++.--|.-.|+.++|++.
T Consensus 257 ~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aVg~YYl~i~k~seARry 334 (611)
T KOG1173|consen 257 GCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAVGCYYLMIGKYSEARRY 334 (611)
T ss_pred cChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhHHHHHHHhcCcHHHHHH
Confidence 899999999999988753 444445555555667777766655555555554 456678888898889899999999999
Q ss_pred HHhcCCCC---hhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCC
Q 036237 374 FRAISKKK---VGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIE 450 (689)
Q Consensus 374 ~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~ 450 (689)
|.+...-| ...|-.....|+-.|..++|+..+....+. ++-...-+.-+.--|.+.++.+.|.++|.... ++-
T Consensus 335 ~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl-~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~---ai~ 410 (611)
T KOG1173|consen 335 FSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARL-MPGCHLPSLYLGMEYMRTNNLKLAEKFFKQAL---AIA 410 (611)
T ss_pred HHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHh-ccCCcchHHHHHHHHHHhccHHHHHHHHHHHH---hcC
Confidence 99877643 358999999999999999999999887763 11122233444556888999999999999987 666
Q ss_pred CC-hhHHHHHHHHHHhcCCHHHHHHHHHhCC--------CCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCch
Q 036237 451 PT-IEHYGCLVDILCRTGYLEEAKSTIESMP--------MRP-NFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIG 520 (689)
Q Consensus 451 p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~--------~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 520 (689)
|+ +..++-+.-+....+.+.+|...|+..- .++ -..+|+.|..+|++.+.+++|+..+++++.+.|.++.
T Consensus 411 P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~ 490 (611)
T KOG1173|consen 411 PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDAS 490 (611)
T ss_pred CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCchh
Confidence 65 6777778878888899999999998751 112 3457899999999999999999999999999999999
Q ss_pred hHHHHHHHHHhcCCcchHHHHHHHHHh
Q 036237 521 CYVVLSNIYAAAGQWDKVSEVREMMKK 547 (689)
Q Consensus 521 ~~~~L~~~~~~~g~~~~A~~~~~~m~~ 547 (689)
+|..++-+|...|+++.|.+.|.+..-
T Consensus 491 ~~asig~iy~llgnld~Aid~fhKaL~ 517 (611)
T KOG1173|consen 491 THASIGYIYHLLGNLDKAIDHFHKALA 517 (611)
T ss_pred HHHHHHHHHHHhcChHHHHHHHHHHHh
Confidence 999999999999999999999987653
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.44 E-value=2e-10 Score=121.37 Aligned_cols=431 Identities=12% Similarity=0.044 Sum_probs=265.9
Q ss_pred HHHHHhHhCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhhCCCCC
Q 036237 108 TLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKD 187 (689)
Q Consensus 108 ~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 187 (689)
.++-.|...|+.||.+||..++.-|+..|+.+.|- +|..|.-..++.+..+++.++......++.+.+. +|.
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-------ep~ 82 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-------EPL 82 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-------CCc
Confidence 45566777788888888888888888888887777 7777777777777777888887777777776665 566
Q ss_pred eehHHHHHHHHHhCCChHHHHHHHhh-CCC------------------------C-CcchHHHHHHHHHhCCChHHHHHH
Q 036237 188 LVSWNCLIDGYVKKGEVEVAMKLFDE-MPD------------------------R-DLFSWTCLVDGFSKCGKVEIAREI 241 (689)
Q Consensus 188 ~~~~~~li~~~~~~g~~~~A~~~~~~-m~~------------------------~-d~~~~~~li~~~~~~g~~~~A~~~ 241 (689)
..+|+.|..+|.+.|++.. ++..++ |.. | ....-.+.+.-....|.++.++++
T Consensus 83 aDtyt~Ll~ayr~hGDli~-fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllkl 161 (1088)
T KOG4318|consen 83 ADTYTNLLKAYRIHGDLIL-FEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLKL 161 (1088)
T ss_pred hhHHHHHHHHHHhccchHH-HHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHHH
Confidence 7778888888888877654 222222 110 0 011112233444556677777777
Q ss_pred HhhcCcC---CcchHHHHHHHHHh-cCCHHHHHHHHHhcCC-CChHHHHHHHHHHHHcCChHHHHHHHHHhccCCCCcCh
Q 036237 242 FYRMPNR---NLVSWNAMINGYMK-AGDVDSACELFDDMEI-RDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPND 316 (689)
Q Consensus 242 ~~~~~~~---~~~~~~~li~~~~~-~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 316 (689)
+..+... ++... .++-... ...+++-........+ ++..++.+.+..-..+|+.+.|..++.+|.+.|++.+.
T Consensus 162 l~~~Pvsa~~~p~~v--fLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~ 239 (1088)
T KOG4318|consen 162 LAKVPVSAWNAPFQV--FLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRA 239 (1088)
T ss_pred HhhCCcccccchHHH--HHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCccc
Confidence 7666531 12211 1222211 1223443333344443 78889999999999999999999999999999999888
Q ss_pred hhHHHHHHHHHcccchhhHHHHHHHHHHhCCccchhHHhHHHhhHHhcCCHHHHHHHH-----------HhcC-------
Q 036237 317 ATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVF-----------RAIS------- 378 (689)
Q Consensus 317 ~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~-----------~~~~------- 378 (689)
.-|..++-+ .++....+.+..-|...|+.|+..++.--+....+.|....+.+.. ..+.
T Consensus 240 HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~e~sq~~hg~tAavrsaa~rg~~a~k 316 (1088)
T KOG4318|consen 240 HYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGEEGSQLAHGFTAAVRSAACRGLLANK 316 (1088)
T ss_pred ccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhcccccchhhhhhHHHHHHHhcccHhHH
Confidence 888887766 7777888888888889999999888876655554433322211111 0000
Q ss_pred ---------------C-------CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHC--CCCCCH-HHHHHHHHH-------
Q 036237 379 ---------------K-------KKVGHWTAMIVGLGMHGMATQALDLFNKMCRM--GMKPTA-ITFIGVLNA------- 426 (689)
Q Consensus 379 ---------------~-------~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~--g~~p~~-~t~~~ll~a------- 426 (689)
+ ....+|...+. ...+|..++..++-..|..- ...|+. ..|..++.-
T Consensus 317 ~l~~nl~~~v~~s~k~~fLlg~d~~~aiws~c~~-l~hQgk~e~veqlvg~l~npt~r~s~~~V~a~~~~lrqyFrr~e~ 395 (1088)
T KOG4318|consen 317 RLRQNLRKSVIGSTKKLFLLGTDILEAIWSMCEK-LRHQGKGEEVEQLVGQLLNPTLRDSGQNVDAFGALLRQYFRRIER 395 (1088)
T ss_pred HHHHHHHHHHHHHhhHHHHhccccchHHHHHHHH-HHHcCCCchHHHHHhhhcCCccccCcchHHHHHHHHHHHHHHHHh
Confidence 0 01123433222 22245555544444433211 011111 112111111
Q ss_pred -------------------------------------------------------------------------HhccCcH
Q 036237 427 -------------------------------------------------------------------------CSHAGLV 433 (689)
Q Consensus 427 -------------------------------------------------------------------------~~~~g~~ 433 (689)
|.+.-+.
T Consensus 396 ~~~~~i~~~~qgls~~l~se~tp~vsell~~lrkns~lr~lv~Lss~Eler~he~~~~~~h~irdi~~ql~l~l~se~n~ 475 (1088)
T KOG4318|consen 396 HICSRIYYAGQGLSLNLNSEDTPRVSELLENLRKNSFLRQLVGLSSTELERSHEPWPLIAHLIRDIANQLHLTLNSEYNK 475 (1088)
T ss_pred hHHHHHHHHHHHHHhhhchhhhHHHHHHHHHhCcchHHHHHhhhhHHHHhcccccchhhhhHHHHHHHHHHHHHHHHHHH
Confidence 1111111
Q ss_pred HHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCC-----CCCCHHHHHHHHHHHHhcCChHHHHHHH
Q 036237 434 NDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMP-----MRPNFVIWMSLLSGARNHGNKDIGEYAA 508 (689)
Q Consensus 434 ~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~-----~~p~~~~~~~ll~~~~~~g~~~~a~~~~ 508 (689)
.+++..-+... ++-+ ...|..||+.+....+.++|..+.++.. +.-|..-+..+.+...+++....+..++
T Consensus 476 lK~l~~~ekye-~~lf---~g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~dLL~r~~~l~dl~tiL 551 (1088)
T KOG4318|consen 476 LKILCDEEKYE-DLLF---AGLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQDLLQRLAILYDLSTIL 551 (1088)
T ss_pred HHHHHHHHHHH-HHHh---hhHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHHHHHHhHHHHHHHHHH
Confidence 11111111111 1011 2567888999999999999999998874 2235556778888889999999999988
Q ss_pred HHHhh---cCCCCchhHHHHHHHHHhcCCcchHHHHHHHHHhCCCccCCcccE
Q 036237 509 NNLIK---VAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSS 558 (689)
Q Consensus 509 ~~~~~---~~p~~~~~~~~L~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~ 558 (689)
+++.+ ..|........+.+.-+..|+.+...++++-+...|+.- .+--|
T Consensus 552 ~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lvslgl~e-tgPl~ 603 (1088)
T KOG4318|consen 552 YEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADILVSLGLSE-TGPLW 603 (1088)
T ss_pred hhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhh-cccce
Confidence 88766 445556677788888899999999999999999988875 34344
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.43 E-value=1e-10 Score=122.53 Aligned_cols=274 Identities=13% Similarity=0.079 Sum_probs=199.9
Q ss_pred cCCHHHHHHHHHhcCCC--ChHH-HHHHHHHHHHcCChHHHHHHHHHhccCCCCcChhhHH--HHHHHHHcccchhhHHH
Q 036237 263 AGDVDSACELFDDMEIR--DLIT-WNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLV--SALSAVAGLAVLNKGRW 337 (689)
Q Consensus 263 ~g~~~~A~~~~~~~~~~--~~~~-~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~--~ll~a~~~~~~~~~a~~ 337 (689)
.|+++.|++.+....+. ++.. |-.......+.|++++|.+.+.++.+. .|+..... .....+...|+++.|..
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al~ 174 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAARH 174 (398)
T ss_pred CCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHHH
Confidence 57777777777765443 2233 323334447788888888888888753 45543332 33456677888888888
Q ss_pred HHHHHHHhCCccchhHHhHHHhhHHhcCCHHHHHHHHHhcCCCCh-----------hhHHHHHHHHHHcCCHHHHHHHHH
Q 036237 338 MHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKV-----------GHWTAMIVGLGMHGMATQALDLFN 406 (689)
Q Consensus 338 i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-----------~~~~~li~~~~~~g~~~~A~~l~~ 406 (689)
.++.+.+.. +.++.+...+...|.+.|++++|.+++..+.+... ..|..++.......+.+...++++
T Consensus 175 ~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~ 253 (398)
T PRK10747 175 GVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWK 253 (398)
T ss_pred HHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 888887776 45677888889999999999999999888876322 133344444444555666677777
Q ss_pred HHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-C
Q 036237 407 KMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESM-PMRP-N 484 (689)
Q Consensus 407 ~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~ 484 (689)
.+.+. .+.+......+..++...|+.++|.++++...+ ..|+.... ++.+....|+.+++.+.+++. +..| |
T Consensus 254 ~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~---~~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~P~~ 327 (398)
T PRK10747 254 NQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLK---RQYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQHGDT 327 (398)
T ss_pred hCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCCCHHHH--HHHhhccCCChHHHHHHHHHHHhhCCCC
Confidence 66442 344667788889999999999999999998884 34555322 233334559999999999876 3345 5
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCcchHHHHHHHHH
Q 036237 485 FVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMK 546 (689)
Q Consensus 485 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~~~~~g~~~~A~~~~~~m~ 546 (689)
+..+..+...|...++++.|...|+++++..|++ ..+..|+.++.+.|+.++|.+++++-.
T Consensus 328 ~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~-~~~~~La~~~~~~g~~~~A~~~~~~~l 388 (398)
T PRK10747 328 PLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDA-YDYAWLADALDRLHKPEEAAAMRRDGL 388 (398)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 5578899999999999999999999999999965 578899999999999999999998654
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.43 E-value=2e-11 Score=125.73 Aligned_cols=274 Identities=12% Similarity=0.028 Sum_probs=214.2
Q ss_pred CHHHHHHHHHhcCCC--Ch-HHHHHHHHHHHHcCChHHHHHHHHHhccCCC--CcChhhHHHHHHHHHcccchhhHHHHH
Q 036237 265 DVDSACELFDDMEIR--DL-ITWNSMIAGYELNGRFMEALELLETMLIGDV--LPNDATLVSALSAVAGLAVLNKGRWMH 339 (689)
Q Consensus 265 ~~~~A~~~~~~~~~~--~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~--~p~~~t~~~ll~a~~~~~~~~~a~~i~ 339 (689)
+..+|...|..++.. |. .....+..+|...+++++|.++|+...+... .-+..+|+++|--+-+. -+..++
T Consensus 334 ~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~----v~Ls~L 409 (638)
T KOG1126|consen 334 NCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDE----VALSYL 409 (638)
T ss_pred HHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhh----HHHHHH
Confidence 467888888886542 33 3445677889999999999999998876421 12455677766544221 111222
Q ss_pred HHHHHhCCccchhHHhHHHhhHHhcCCHHHHHHHHHhcCCC---ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC
Q 036237 340 SYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKK---KVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPT 416 (689)
Q Consensus 340 ~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~ 416 (689)
..-.-.--+..+.+|.++.++|.-+++.+.|++.|++..+- ...+|+.+..-+.....+|+|...|+..+. +.|.
T Consensus 410 aq~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~--~~~r 487 (638)
T KOG1126|consen 410 AQDLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALG--VDPR 487 (638)
T ss_pred HHHHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhc--CCch
Confidence 22111122456899999999999999999999999998874 456888888889999999999999999875 5666
Q ss_pred HH-HHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHH
Q 036237 417 AI-TFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPT-IEHYGCLVDILCRTGYLEEAKSTIESM-PMRP-NFVIWMSLL 492 (689)
Q Consensus 417 ~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll 492 (689)
.. .|-.+...|.+.++++.|+-.|+++. .+.|. .....++...+-+.|+.++|+.+++++ ...| |+..---.+
T Consensus 488 hYnAwYGlG~vy~Kqek~e~Ae~~fqkA~---~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~ 564 (638)
T KOG1126|consen 488 HYNAWYGLGTVYLKQEKLEFAEFHFQKAV---EINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRA 564 (638)
T ss_pred hhHHHHhhhhheeccchhhHHHHHHHhhh---cCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHH
Confidence 54 67778889999999999999999998 56676 566778889999999999999999997 3333 555555556
Q ss_pred HHHHhcCChHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCcchHHHHHHHHHh
Q 036237 493 SGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKK 547 (689)
Q Consensus 493 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~~~~~g~~~~A~~~~~~m~~ 547 (689)
..+...+++++|...++++.++-|++..+|..++.+|-+.|+.+.|..-|.-+.+
T Consensus 565 ~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ 619 (638)
T KOG1126|consen 565 SILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALD 619 (638)
T ss_pred HHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhc
Confidence 6677889999999999999999999999999999999999999999988877665
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.1e-10 Score=114.20 Aligned_cols=412 Identities=13% Similarity=0.093 Sum_probs=260.8
Q ss_pred HHhcCChHHHHHHHHHHHHhCCCCchhHH-HHHHHHHHhcCChHHHHHHHhhCCC--CC------eehHHHHHHHHHhCC
Q 036237 132 AARLGAIKEGKQIHGLVFKLGFGFDKFVL-SSLVSMYAKFGEIDLGRRVFDAMDD--KD------LVSWNCLIDGYVKKG 202 (689)
Q Consensus 132 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~-~~li~~~~~~g~~~~A~~~~~~m~~--~~------~~~~~~li~~~~~~g 202 (689)
|.......+|...++-+++...-|+.-.. -.+.+.|.+..++.+|.+.++.... |+ +...|.+-..+.+.|
T Consensus 211 y~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvtfiq~g 290 (840)
T KOG2003|consen 211 YEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTFIQAG 290 (840)
T ss_pred hhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeEEecc
Confidence 44445566777777777777655555432 2344566777777888777754432 11 123444445667778
Q ss_pred ChHHHHHHHhhCCC--CCcchHHHHHHHHHhCCChHHHHHHHhhcCc-C---------------CcchHHHH-----HHH
Q 036237 203 EVEVAMKLFDEMPD--RDLFSWTCLVDGFSKCGKVEIAREIFYRMPN-R---------------NLVSWNAM-----ING 259 (689)
Q Consensus 203 ~~~~A~~~~~~m~~--~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~---------------~~~~~~~l-----i~~ 259 (689)
.+++|+.-|+...+ |+..+-..|+-++...|+.++..+.|.+|+. | +....+.. +.-
T Consensus 291 qy~dainsfdh~m~~~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd~lk~ 370 (840)
T KOG2003|consen 291 QYDDAINSFDHCMEEAPNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKNDHLKN 370 (840)
T ss_pred cchhhHhhHHHHHHhCccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhHHHHH
Confidence 88888888877654 6655544555556667788888888877764 1 11111111 111
Q ss_pred HHhcCC--HHHHH----HHHHhcCCCChH---HH----------H--------HHHHHHHHcCChHHHHHHHHHhccCCC
Q 036237 260 YMKAGD--VDSAC----ELFDDMEIRDLI---TW----------N--------SMIAGYELNGRFMEALELLETMLIGDV 312 (689)
Q Consensus 260 ~~~~g~--~~~A~----~~~~~~~~~~~~---~~----------~--------~li~~~~~~g~~~~A~~~~~~m~~~g~ 312 (689)
.-+.+. .++++ ++..-+..+|-. -| . .-..-|.++|+++.|+++++-+.+..-
T Consensus 371 ~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilkv~~~kdn 450 (840)
T KOG2003|consen 371 MEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEILKVFEKKDN 450 (840)
T ss_pred HHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHHHHHhccc
Confidence 111111 11221 111111222210 01 0 112347899999999999988876543
Q ss_pred CcChhhHHHH--HHHHHcccchhhHHHHHHHHHHhCCccchhHHhHHHhhHHhcCCHHHHHHHHHhcCCCChhhHHHH--
Q 036237 313 LPNDATLVSA--LSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAM-- 388 (689)
Q Consensus 313 ~p~~~t~~~l--l~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l-- 388 (689)
+.-+..-+.+ +.-.-...++..|.++-+..+... .-++.....-.+.-...|++++|.+.+++....|...-.+|
T Consensus 451 k~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfn 529 (840)
T KOG2003|consen 451 KTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFN 529 (840)
T ss_pred hhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHH
Confidence 3222222222 222222345667777766655432 11222222222334457999999999999998876654444
Q ss_pred -HHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcC
Q 036237 389 -IVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTG 467 (689)
Q Consensus 389 -i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g 467 (689)
.-.+-..|+.++|++.|-++... +..+......+.+.|....+..+|++++-.... -++-|+.+.+.|.++|-+.|
T Consensus 530 iglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~~s--lip~dp~ilskl~dlydqeg 606 (840)
T KOG2003|consen 530 IGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQANS--LIPNDPAILSKLADLYDQEG 606 (840)
T ss_pred hcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcc--cCCCCHHHHHHHHHHhhccc
Confidence 33467789999999999988753 334556777788888889999999999987762 34445889999999999999
Q ss_pred CHHHHHHHHHh-CC-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCcchHHHHHHHH
Q 036237 468 YLEEAKSTIES-MP-MRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMM 545 (689)
Q Consensus 468 ~~~~A~~~~~~-~~-~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~~~~~g~~~~A~~~~~~m 545 (689)
+-..|.+..-. .. ++-+..+..-|..-|....-.+.++..|+++--+.|+...-...++.++.+.|++.+|.++++..
T Consensus 607 dksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~d~yk~~ 686 (840)
T KOG2003|consen 607 DKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDI 686 (840)
T ss_pred chhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 99999987543 33 33366666667777777777899999999999999976555556667778999999999999987
Q ss_pred Hh
Q 036237 546 KK 547 (689)
Q Consensus 546 ~~ 547 (689)
..
T Consensus 687 hr 688 (840)
T KOG2003|consen 687 HR 688 (840)
T ss_pred HH
Confidence 64
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.38 E-value=8.8e-10 Score=116.24 Aligned_cols=285 Identities=10% Similarity=0.035 Sum_probs=166.6
Q ss_pred HhCCChHHHHHHHhhCCC--CCc-chHHHHHHHHHhCCChHHHHHHHhhcCc--CCc--chHHHHHHHHHhcCCHHHHHH
Q 036237 199 VKKGEVEVAMKLFDEMPD--RDL-FSWTCLVDGFSKCGKVEIAREIFYRMPN--RNL--VSWNAMINGYMKAGDVDSACE 271 (689)
Q Consensus 199 ~~~g~~~~A~~~~~~m~~--~d~-~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~--~~~~~li~~~~~~g~~~~A~~ 271 (689)
...|+++.|.+.+.+..+ |+. ..+-....+..+.|+.+.|.+.+.+..+ |+. .+.-.....+...|+++.|..
T Consensus 95 ~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~ 174 (409)
T TIGR00540 95 LAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARH 174 (409)
T ss_pred HhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHH
Confidence 346888888888777654 222 2233344556677888888887777643 332 233334666677777777777
Q ss_pred HHHhcCCC---ChHHHHHHHHHHHHcCChHHHHHHHHHhccCCCCcChhhHHHHHHHHHcccchhhHHHHHHHHHHhCCc
Q 036237 272 LFDDMEIR---DLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFV 348 (689)
Q Consensus 272 ~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~ 348 (689)
.++.+.+. +...+..+...+.+.|++++|.+++..+.+.++.++. .+..+-.
T Consensus 175 ~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~-~~~~l~~------------------------ 229 (409)
T TIGR00540 175 GVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDE-EFADLEQ------------------------ 229 (409)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHH-HHHHHHH------------------------
Confidence 77776532 5556667777777777777777777777766532221 1110000
Q ss_pred cchhHHhHHHhhHHhcCCHHHHHHHHHhcCC---CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHH---HH
Q 036237 349 VDGVLGTLLIQMYSKCGSIESALTVFRAISK---KKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITF---IG 422 (689)
Q Consensus 349 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~---~~ 422 (689)
..+..+++.-......+...+.++..+. .++..+..++..+...|+.++|.+++++..+. .||.... ..
T Consensus 230 ---~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~--~pd~~~~~~~~l 304 (409)
T TIGR00540 230 ---KAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK--LGDDRAISLPLC 304 (409)
T ss_pred ---HHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh--CCCcccchhHHH
Confidence 0000011111111223344444444443 36777788888888888888888888888874 4444321 11
Q ss_pred HHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHh---CCCCCCHHHHHHHHHHHHhcC
Q 036237 423 VLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIES---MPMRPNFVIWMSLLSGARNHG 499 (689)
Q Consensus 423 ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~---~~~~p~~~~~~~ll~~~~~~g 499 (689)
........++.+.+.+.++...+...-.|+.....++...+.+.|++++|.+.|+. ....|+...+..+...+.+.|
T Consensus 305 ~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g 384 (409)
T TIGR00540 305 LPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAG 384 (409)
T ss_pred HHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcC
Confidence 11222334667777777777664322222214555777777777777777777773 234577776667777777777
Q ss_pred ChHHHHHHHHHHhh
Q 036237 500 NKDIGEYAANNLIK 513 (689)
Q Consensus 500 ~~~~a~~~~~~~~~ 513 (689)
+.++|.+++++.+.
T Consensus 385 ~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 385 DKAEAAAMRQDSLG 398 (409)
T ss_pred CHHHHHHHHHHHHH
Confidence 77777777776654
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.37 E-value=2.4e-12 Score=128.78 Aligned_cols=250 Identities=15% Similarity=0.169 Sum_probs=104.3
Q ss_pred HHHHHHhcCCHHHHHHHHHhc-C----CCChHHHHHHHHHHHHcCChHHHHHHHHHhccCCCCcChhhHHHHHHHHHccc
Q 036237 256 MINGYMKAGDVDSACELFDDM-E----IRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLA 330 (689)
Q Consensus 256 li~~~~~~g~~~~A~~~~~~~-~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~ 330 (689)
+..++.+.|++++|.+++++. . ..|+..|..+.......+++++|++.++++...+.. +...+..++.. ...+
T Consensus 14 ~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~~ 91 (280)
T PF13429_consen 14 LARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQDG 91 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-cccc
Confidence 355566667777777777432 2 124555666666666677777777777777765422 33344444444 5667
Q ss_pred chhhHHHHHHHHHHhCCccchhHHhHHHhhHHhcCCHHHHHHHHHhcC-----CCChhhHHHHHHHHHHcCCHHHHHHHH
Q 036237 331 VLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAIS-----KKKVGHWTAMIVGLGMHGMATQALDLF 405 (689)
Q Consensus 331 ~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~-----~~~~~~~~~li~~~~~~g~~~~A~~l~ 405 (689)
++++|.++.....+.. +++..+..++..|.+.|+++++.++++.+. ..+...|..+...+.+.|+.++|++.+
T Consensus 92 ~~~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~ 169 (280)
T PF13429_consen 92 DPEEALKLAEKAYERD--GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDY 169 (280)
T ss_dssp ----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred cccccccccccccccc--cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 7777777766554433 455566677788888888888888888754 246678888889999999999999999
Q ss_pred HHHHHCCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCC-CCC
Q 036237 406 NKMCRMGMKPT-AITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMP-MRP 483 (689)
Q Consensus 406 ~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~p 483 (689)
++..+ ..|+ ......++..+...|+.+++.++++...+. .+.+...+..+..+|...|+.++|...+++.- ..|
T Consensus 170 ~~al~--~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~--~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p 245 (280)
T PF13429_consen 170 RKALE--LDPDDPDARNALAWLLIDMGDYDEAREALKRLLKA--APDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNP 245 (280)
T ss_dssp HHHHH--H-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH---HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHST
T ss_pred HHHHH--cCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHH--CcCHHHHHHHHHHHhccccccccccccccccccccc
Confidence 99988 4675 556778888899999999999988888753 35566778889999999999999999998862 234
Q ss_pred -CHHHHHHHHHHHHhcCChHHHHHHHHHHhh
Q 036237 484 -NFVIWMSLLSGARNHGNKDIGEYAANNLIK 513 (689)
Q Consensus 484 -~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 513 (689)
|+.+...+..++...|+.++|..+.+++.+
T Consensus 246 ~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 246 DDPLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp T-HHHHHHHHHHHT-----------------
T ss_pred ccccccccccccccccccccccccccccccc
Confidence 677778889999999999999998887765
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.37 E-value=3e-10 Score=119.82 Aligned_cols=277 Identities=11% Similarity=0.040 Sum_probs=186.2
Q ss_pred HhcCChHHHHHHHhhCCCC--Ce-ehHHHHHHHHHhCCChHHHHHHHhhCCC--CCcc--hHHHHHHHHHhCCChHHHHH
Q 036237 168 AKFGEIDLGRRVFDAMDDK--DL-VSWNCLIDGYVKKGEVEVAMKLFDEMPD--RDLF--SWTCLVDGFSKCGKVEIARE 240 (689)
Q Consensus 168 ~~~g~~~~A~~~~~~m~~~--~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~--~d~~--~~~~li~~~~~~g~~~~A~~ 240 (689)
...|+++.|++.+.+..+. +. ..+-.....+.+.|+.+.|...+.+..+ |+.. ........+...|+++.|..
T Consensus 95 ~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~ 174 (409)
T TIGR00540 95 LAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARH 174 (409)
T ss_pred HhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHH
Confidence 3679999999999887653 22 2334445677888999999999999754 4442 33345778889999999999
Q ss_pred HHhhcCcC---CcchHHHHHHHHHhcCCHHHHHHHHHhcCCC---ChHHHHHHH----HHHHHcCChHHHHHHHHHhccC
Q 036237 241 IFYRMPNR---NLVSWNAMINGYMKAGDVDSACELFDDMEIR---DLITWNSMI----AGYELNGRFMEALELLETMLIG 310 (689)
Q Consensus 241 ~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li----~~~~~~g~~~~A~~~~~~m~~~ 310 (689)
.++.+.+. ++.+...+...|...|++++|.+.+..+.+. +...+..+- .+....+..+++.+.+..+...
T Consensus 175 ~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~ 254 (409)
T TIGR00540 175 GVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKN 254 (409)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 99999863 4678889999999999999999999988754 222232111 1112222222222222222221
Q ss_pred CCCcChhhHHHHHHHHHcccchhhHHHHHHHHHHhCCccchhHHhHHHhhHHhcCCHHHHHHHHHhcCCCChhhH-----
Q 036237 311 DVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHW----- 385 (689)
Q Consensus 311 g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~----- 385 (689)
. |+ ..+.++..+..+...+...|+.++|.+++++..+..+...
T Consensus 255 ~--p~------------------------------~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~ 302 (409)
T TIGR00540 255 Q--PR------------------------------HRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLP 302 (409)
T ss_pred C--CH------------------------------HHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhH
Confidence 1 10 0113556666677777777777777777777665222211
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH---HHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHH
Q 036237 386 TAMIVGLGMHGMATQALDLFNKMCRMGMKPTAI---TFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDI 462 (689)
Q Consensus 386 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~---t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~ 462 (689)
..........++.+++++.+++..+ ..|+.. ...++...|.+.|++++|.++|+... .....|+...+..+...
T Consensus 303 ~l~~~~~l~~~~~~~~~~~~e~~lk--~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~-a~~~~p~~~~~~~La~l 379 (409)
T TIGR00540 303 LCLPIPRLKPEDNEKLEKLIEKQAK--NVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVA-ACKEQLDANDLAMAADA 379 (409)
T ss_pred HHHHhhhcCCCChHHHHHHHHHHHH--hCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhH-HhhcCCCHHHHHHHHHH
Confidence 2222223345777888888888776 355544 45577788899999999999998533 22567888888899999
Q ss_pred HHhcCCHHHHHHHHHhC
Q 036237 463 LCRTGYLEEAKSTIESM 479 (689)
Q Consensus 463 ~~~~g~~~~A~~~~~~~ 479 (689)
+.+.|+.++|.+++++.
T Consensus 380 l~~~g~~~~A~~~~~~~ 396 (409)
T TIGR00540 380 FDQAGDKAEAAAMRQDS 396 (409)
T ss_pred HHHcCCHHHHHHHHHHH
Confidence 99999999999998863
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.37 E-value=6e-09 Score=102.94 Aligned_cols=342 Identities=14% Similarity=0.134 Sum_probs=228.6
Q ss_pred HHHHhCCChHHHHHHHhhCCCCCcchHHHHHHHHHhCCChHHHHHHHhhcCcCC-cchHHHHHHHHHhcCCHHHHHHHHH
Q 036237 196 DGYVKKGEVEVAMKLFDEMPDRDLFSWTCLVDGFSKCGKVEIAREIFYRMPNRN-LVSWNAMINGYMKAGDVDSACELFD 274 (689)
Q Consensus 196 ~~~~~~g~~~~A~~~~~~m~~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~ 274 (689)
..+.+.|....|+..|......-+..|.+-+....-.-+.+.+..+........ .-.---+..+|-...+.+++..-.+
T Consensus 172 vv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~~e~~~~l~~~l~~~~h~M~~~F~~~a~~el~q~~e~~~k~e 251 (559)
T KOG1155|consen 172 VVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITDIEILSILVVGLPSDMHWMKKFFLKKAYQELHQHEEALQKKE 251 (559)
T ss_pred HHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhchHHHHHHHHhcCcccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455666666666666555444444444443333333333333322221110 0000112334444444555544433
Q ss_pred hcCCC----ChHHHHHHHHHHHHcCChHHHHHHHHHhccCCC--CcChhhHHHHHHHHHcccchhh-HHHHHHHHHHhCC
Q 036237 275 DMEIR----DLITWNSMIAGYELNGRFMEALELLETMLIGDV--LPNDATLVSALSAVAGLAVLNK-GRWMHSYIVKNGF 347 (689)
Q Consensus 275 ~~~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~--~p~~~t~~~ll~a~~~~~~~~~-a~~i~~~~~~~g~ 347 (689)
..... +...-+....+.-...++++|+.+|+++.+... --|..+|+.+|-.-.....+.- |..++ .+ .
T Consensus 252 ~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~LA~~v~-~i--d-- 326 (559)
T KOG1155|consen 252 RLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYLAQNVS-NI--D-- 326 (559)
T ss_pred HHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHHHHHHH-Hh--c--
Confidence 33221 122222223344456788999999999887632 1255677776654332221111 11111 11 1
Q ss_pred ccchhHHhHHHhhHHhcCCHHHHHHHHHhcCCC---ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHH
Q 036237 348 VVDGVLGTLLIQMYSKCGSIESALTVFRAISKK---KVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKP-TAITFIGV 423 (689)
Q Consensus 348 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~l 423 (689)
.-.+.+...+.+-|+-.++.++|...|++..+- ....|+.|..-|...++...|++-++...+ +.| |...|-.|
T Consensus 327 KyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvd--i~p~DyRAWYGL 404 (559)
T KOG1155|consen 327 KYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVD--INPRDYRAWYGL 404 (559)
T ss_pred cCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHh--cCchhHHHHhhh
Confidence 223556777888889999999999999998763 456899999999999999999999999998 444 56689999
Q ss_pred HHHHhccCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCC
Q 036237 424 LNACSHAGLVNDGRRYFNMMINDYGIEPT-IEHYGCLVDILCRTGYLEEAKSTIESMP--MRPNFVIWMSLLSGARNHGN 500 (689)
Q Consensus 424 l~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~ll~~~~~~g~ 500 (689)
..+|.-.+...=|+-+|++.. .+.|+ ...|.+|.+.|.+.+++++|++.|.+.- ...+...+..|...+-+.++
T Consensus 405 GQaYeim~Mh~YaLyYfqkA~---~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d 481 (559)
T KOG1155|consen 405 GQAYEIMKMHFYALYYFQKAL---ELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKD 481 (559)
T ss_pred hHHHHHhcchHHHHHHHHHHH---hcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHh
Confidence 999999999999999999998 45665 7999999999999999999999999872 23355789999999999999
Q ss_pred hHHHHHHHHHHhh-------cCCCCchhHHHHHHHHHhcCCcchHHHHHHHHHh
Q 036237 501 KDIGEYAANNLIK-------VAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKK 547 (689)
Q Consensus 501 ~~~a~~~~~~~~~-------~~p~~~~~~~~L~~~~~~~g~~~~A~~~~~~m~~ 547 (689)
.++|...+++-++ .+|....+..-|+.-+.+.+++++|..+......
T Consensus 482 ~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~ 535 (559)
T KOG1155|consen 482 LNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLK 535 (559)
T ss_pred HHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhc
Confidence 9999999999887 4455555666788889999999999887765443
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.35 E-value=3.7e-08 Score=97.59 Aligned_cols=453 Identities=12% Similarity=0.093 Sum_probs=325.5
Q ss_pred CChhhHHHHHHHHHhCCCchHHHHHHHHhHhCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHH
Q 036237 85 PSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLV 164 (689)
Q Consensus 85 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li 164 (689)
-+...|---..-=-..++...|..+|++.+... .-+...|...+..=.+...+..|+.++++++..= +.-...|--.+
T Consensus 71 ~~~~~WikYaqwEesq~e~~RARSv~ERALdvd-~r~itLWlkYae~Emknk~vNhARNv~dRAvt~l-PRVdqlWyKY~ 148 (677)
T KOG1915|consen 71 LNMQVWIKYAQWEESQKEIQRARSVFERALDVD-YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTIL-PRVDQLWYKYI 148 (677)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcc-cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhc-chHHHHHHHHH
Confidence 344556555555556788899999999998654 2244455556666667888999999999998763 22223566666
Q ss_pred HHHHhcCChHHHHHHHhhCC--CCCeehHHHHHHHHHhCCChHHHHHHHhhCC--CCCcchHHHHHHHHHhCCChHHHHH
Q 036237 165 SMYAKFGEIDLGRRVFDAMD--DKDLVSWNCLIDGYVKKGEVEVAMKLFDEMP--DRDLFSWTCLVDGFSKCGKVEIARE 240 (689)
Q Consensus 165 ~~~~~~g~~~~A~~~~~~m~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~--~~d~~~~~~li~~~~~~g~~~~A~~ 240 (689)
.|=-..|++..|+++|++-. +|+..+|++.|..-.+...++.|..++++.. .|++.+|--....=.+.|....|..
T Consensus 149 ymEE~LgNi~gaRqiferW~~w~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~ 228 (677)
T KOG1915|consen 149 YMEEMLGNIAGARQIFERWMEWEPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARS 228 (677)
T ss_pred HHHHHhcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHH
Confidence 67777899999999999765 6999999999999999999999999999975 4899999888888889999999999
Q ss_pred HHhhcCc--C----CcchHHHHHHHHHhcCCHHHHHHHHHhcC----CC-ChHHHHHHHHHHHHcCCh---HHHHHH---
Q 036237 241 IFYRMPN--R----NLVSWNAMINGYMKAGDVDSACELFDDME----IR-DLITWNSMIAGYELNGRF---MEALEL--- 303 (689)
Q Consensus 241 ~~~~~~~--~----~~~~~~~li~~~~~~g~~~~A~~~~~~~~----~~-~~~~~~~li~~~~~~g~~---~~A~~~--- 303 (689)
+|+.+.+ . +...+.+....=.++..++.|.-+|.-.. +. ....|.....-=-+-|+. ++++--
T Consensus 229 VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk 308 (677)
T KOG1915|consen 229 VYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRK 308 (677)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhh
Confidence 9998875 1 24455555555567788888888876543 22 233444444333344553 333322
Q ss_pred --HHHhccCCCCcChhhHHHHHHHHHcccchhhHHHHHHHHHHhCCccch------hHHhHHHh---hHHhcCCHHHHHH
Q 036237 304 --LETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDG------VLGTLLIQ---MYSKCGSIESALT 372 (689)
Q Consensus 304 --~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~------~~~~~li~---~~~~~g~~~~A~~ 372 (689)
|+.++..+ +-|-.++--.+..-...|+.+...++++.++..-.+... .+|--+=- .-....+.+.+.+
T Consensus 309 ~qYE~~v~~n-p~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~ 387 (677)
T KOG1915|consen 309 FQYEKEVSKN-PYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQ 387 (677)
T ss_pred hHHHHHHHhC-CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 33344332 456677777888888889999999999998865433221 12211111 1134578888899
Q ss_pred HHHhcCC--C-Chh----hHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHH
Q 036237 373 VFRAISK--K-KVG----HWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMIN 445 (689)
Q Consensus 373 ~~~~~~~--~-~~~----~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 445 (689)
+|+...+ | .-. .|-.....-.++.+...|.+++-..+ |..|-..+|...|..-.+.+.+|..+.+|+..+.
T Consensus 388 vyq~~l~lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI--G~cPK~KlFk~YIelElqL~efDRcRkLYEkfle 465 (677)
T KOG1915|consen 388 VYQACLDLIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI--GKCPKDKLFKGYIELELQLREFDRCRKLYEKFLE 465 (677)
T ss_pred HHHHHHhhcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh--ccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 9887665 2 223 34444555567888999999988776 6889999999999999999999999999999983
Q ss_pred hcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCch
Q 036237 446 DYGIEPT-IEHYGCLVDILCRTGYLEEAKSTIESMPMRPN----FVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIG 520 (689)
Q Consensus 446 ~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 520 (689)
..|. ..+|......=...|+.+.|..+|.-+-.+|. ...|-+.|.--...|.++.|..+++++++..+...
T Consensus 466 ---~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h~k- 541 (677)
T KOG1915|consen 466 ---FSPENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQHVK- 541 (677)
T ss_pred ---cChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcccch-
Confidence 4454 67788888888889999999999988754553 44677777777788999999999999999887543
Q ss_pred hHHHHHHHHH-----hcC-----------CcchHHHHHHHHH
Q 036237 521 CYVVLSNIYA-----AAG-----------QWDKVSEVREMMK 546 (689)
Q Consensus 521 ~~~~L~~~~~-----~~g-----------~~~~A~~~~~~m~ 546 (689)
++...+.--. +.| ....|..+|++..
T Consensus 542 vWisFA~fe~s~~~~~~~~~~~~~e~~~~~~~~AR~iferAn 583 (677)
T KOG1915|consen 542 VWISFAKFEASASEGQEDEDLAELEITDENIKRARKIFERAN 583 (677)
T ss_pred HHHhHHHHhccccccccccchhhhhcchhHHHHHHHHHHHHH
Confidence 5555554433 233 4556777777654
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.35 E-value=9.8e-10 Score=103.61 Aligned_cols=277 Identities=13% Similarity=0.153 Sum_probs=154.1
Q ss_pred CChHHHHHHHhhCCCCCcchH---HHHHHHHHhCCChHHHHHHHhhcCc-CC------cchHHHHHHHHHhcCCHHHHHH
Q 036237 202 GEVEVAMKLFDEMPDRDLFSW---TCLVDGFSKCGKVEIAREIFYRMPN-RN------LVSWNAMINGYMKAGDVDSACE 271 (689)
Q Consensus 202 g~~~~A~~~~~~m~~~d~~~~---~~li~~~~~~g~~~~A~~~~~~~~~-~~------~~~~~~li~~~~~~g~~~~A~~ 271 (689)
.+.++|.++|-+|.+.|..|+ -+|.+.|.+.|..|.|+++++.+.+ || ..+...|..-|.+.|-+|.|+.
T Consensus 49 ~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE~ 128 (389)
T COG2956 49 NQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRAED 128 (389)
T ss_pred cCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHHH
Confidence 455666666666665544433 3566777788888888888877765 33 3344567778889999999999
Q ss_pred HHHhcCCCC---hHHHHHHHHHHHHcCChHHHHHHHHHhccCCCCcChhhHHHHHHHHHcccchhhHHHHHHHHHHhCCc
Q 036237 272 LFDDMEIRD---LITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFV 348 (689)
Q Consensus 272 ~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~ 348 (689)
+|..+.+.+ ......|+..|-+..+|++|++.-+++.+.+-++..+-..
T Consensus 129 ~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIA---------------------------- 180 (389)
T COG2956 129 IFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIA---------------------------- 180 (389)
T ss_pred HHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHH----------------------------
Confidence 999887643 3456678889999999999999999888766544433211
Q ss_pred cchhHHhHHHhhHHhcCCHHHHHHHHHhcCCCC---hhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 036237 349 VDGVLGTLLIQMYSKCGSIESALTVFRAISKKK---VGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLN 425 (689)
Q Consensus 349 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~ 425 (689)
..|.-|...+....+.+.|..++.+..+.| +..--.+...+...|++..|++.++...+.+..--..+...|..
T Consensus 181 ---qfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~ 257 (389)
T COG2956 181 ---QFYCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYE 257 (389)
T ss_pred ---HHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHH
Confidence 112223333333444444555554444322 22222334445555666666666555555322212234455555
Q ss_pred HHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHH-HHhCCCCCCHHHHHHHHHHHHhc---CCh
Q 036237 426 ACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKST-IESMPMRPNFVIWMSLLSGARNH---GNK 501 (689)
Q Consensus 426 a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~-~~~~~~~p~~~~~~~ll~~~~~~---g~~ 501 (689)
+|.+.|+.+++...+..+.. ..+....-..+.+.-....-.+.|... .+.+.-+|+...+..|+..-... |..
T Consensus 258 ~Y~~lg~~~~~~~fL~~~~~---~~~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~gf~rl~~~~l~daeeg~~ 334 (389)
T COG2956 258 CYAQLGKPAEGLNFLRRAME---TNTGADAELMLADLIELQEGIDAAQAYLTRQLRRKPTMRGFHRLMDYHLADAEEGRA 334 (389)
T ss_pred HHHHhCCHHHHHHHHHHHHH---ccCCccHHHHHHHHHHHhhChHHHHHHHHHHHhhCCcHHHHHHHHHhhhccccccch
Confidence 56666666666655555552 223333333344433333333333333 33344556666666666554332 223
Q ss_pred HHHHHHHHHHh
Q 036237 502 DIGEYAANNLI 512 (689)
Q Consensus 502 ~~a~~~~~~~~ 512 (689)
.+....++.++
T Consensus 335 k~sL~~lr~mv 345 (389)
T COG2956 335 KESLDLLRDMV 345 (389)
T ss_pred hhhHHHHHHHH
Confidence 33344444444
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.34 E-value=2.2e-07 Score=95.81 Aligned_cols=387 Identities=11% Similarity=0.078 Sum_probs=225.4
Q ss_pred hcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhhCCC---CCeehHHHHHHHHHhCCChHHHHHH
Q 036237 134 RLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDD---KDLVSWNCLIDGYVKKGEVEVAMKL 210 (689)
Q Consensus 134 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~ 210 (689)
...+.+.|+.++.++++.- +.+...|. +|++..-++.|.+++....+ .+...|.+-...--.+|..+...++
T Consensus 388 elE~~~darilL~rAvecc-p~s~dLwl----AlarLetYenAkkvLNkaRe~iptd~~IWitaa~LEE~ngn~~mv~ki 462 (913)
T KOG0495|consen 388 ELEEPEDARILLERAVECC-PQSMDLWL----ALARLETYENAKKVLNKAREIIPTDREIWITAAKLEEANGNVDMVEKI 462 (913)
T ss_pred hccChHHHHHHHHHHHHhc-cchHHHHH----HHHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHhcCCHHHHHHH
Confidence 3344444555555555442 22222332 23334445555555544432 3555555555555555665555555
Q ss_pred HhhCCC--------CCcchHHHHHHHHHhCCChHHHHHHHhhcCcC------CcchHHHHHHHHHhcCCHHHHHHHHHhc
Q 036237 211 FDEMPD--------RDLFSWTCLVDGFSKCGKVEIAREIFYRMPNR------NLVSWNAMINGYMKAGDVDSACELFDDM 276 (689)
Q Consensus 211 ~~~m~~--------~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~li~~~~~~g~~~~A~~~~~~~ 276 (689)
.++-.. -+...|-.=...|-..|..-.+..+....+.- -..+|+.-.+.|.+.+.++-|..+|...
T Consensus 463 i~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~a 542 (913)
T KOG0495|consen 463 IDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHA 542 (913)
T ss_pred HHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHH
Confidence 544321 12233333333444444444444443333321 1345666666677777777777777665
Q ss_pred CC---CChHHHHHHHHHHHHcCChHHHHHHHHHhccCCCCcChhhHHHHHHHHHcccchhhHHHHHHHHHHhCCccchhH
Q 036237 277 EI---RDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVL 353 (689)
Q Consensus 277 ~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~ 353 (689)
.+ .+...|...+..--..|..++-..+|++....- +-....+.......-..|+...|+.++..+.+.... +..+
T Consensus 543 lqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~-pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pn-seei 620 (913)
T KOG0495|consen 543 LQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQC-PKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPN-SEEI 620 (913)
T ss_pred HhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCC-cHHH
Confidence 53 245566666665566677777777777776542 223333334444455567777777777777766533 5666
Q ss_pred HhHHHhhHHhcCCHHHHHHHHHhcCC--CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhcc
Q 036237 354 GTLLIQMYSKCGSIESALTVFRAISK--KKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAI-TFIGVLNACSHA 430 (689)
Q Consensus 354 ~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~~ 430 (689)
+-+-+..-.....++.|+.+|.+... +....|.--+...--.++.++|++++++..+ .-|+.. .|..+...+.+.
T Consensus 621 wlaavKle~en~e~eraR~llakar~~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk--~fp~f~Kl~lmlGQi~e~~ 698 (913)
T KOG0495|consen 621 WLAAVKLEFENDELERARDLLAKARSISGTERVWMKSANLERYLDNVEEALRLLEEALK--SFPDFHKLWLMLGQIEEQM 698 (913)
T ss_pred HHHHHHHhhccccHHHHHHHHHHHhccCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHH--hCCchHHHHHHHhHHHHHH
Confidence 77777777777777777777776654 4455666666666666777777777777766 355543 566666677777
Q ss_pred CcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCChHHHHHHH
Q 036237 431 GLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPM--RPNFVIWMSLLSGARNHGNKDIGEYAA 508 (689)
Q Consensus 431 g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~p~~~~~~~ll~~~~~~g~~~~a~~~~ 508 (689)
++++.|+..|..-.+ ..+-.+..|-.|.++=.+.|.+-.|..++++... +.|...|...+..-.+.|+.+.|..+.
T Consensus 699 ~~ie~aR~aY~~G~k--~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lm 776 (913)
T KOG0495|consen 699 ENIEMAREAYLQGTK--KCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAELLM 776 (913)
T ss_pred HHHHHHHHHHHhccc--cCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHH
Confidence 777777777765542 2333356677777777777777777777777632 236667777777777777777777777
Q ss_pred HHHhhcCCCCchhHHHHHHHHHh
Q 036237 509 NNLIKVAPDTIGCYVVLSNIYAA 531 (689)
Q Consensus 509 ~~~~~~~p~~~~~~~~L~~~~~~ 531 (689)
.++++.-|.+...+..-+.+.-+
T Consensus 777 akALQecp~sg~LWaEaI~le~~ 799 (913)
T KOG0495|consen 777 AKALQECPSSGLLWAEAIWLEPR 799 (913)
T ss_pred HHHHHhCCccchhHHHHHHhccC
Confidence 77766655544333333333333
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.32 E-value=3.2e-10 Score=110.05 Aligned_cols=197 Identities=12% Similarity=0.042 Sum_probs=163.8
Q ss_pred chhHHhHHHhhHHhcCCHHHHHHHHHhcCC---CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 036237 350 DGVLGTLLIQMYSKCGSIESALTVFRAISK---KKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNA 426 (689)
Q Consensus 350 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a 426 (689)
....+..+...|...|++++|.+.|++... .+...+..+...|...|++++|.+.+++..+.. +.+...+..+...
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~ 108 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHH
Confidence 355667788889999999999999987764 346678888999999999999999999998753 3345577778888
Q ss_pred HhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHH
Q 036237 427 CSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESM-PMRP-NFVIWMSLLSGARNHGNKDIG 504 (689)
Q Consensus 427 ~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a 504 (689)
+...|++++|...++..............+..+...+.+.|++++|...+++. ...| +...|..+...+...|+++.|
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 188 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDA 188 (234)
T ss_pred HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHH
Confidence 99999999999999999853222233567778899999999999999999886 2334 466888899999999999999
Q ss_pred HHHHHHHhhcCCCCchhHHHHHHHHHhcCCcchHHHHHHHHHh
Q 036237 505 EYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKK 547 (689)
Q Consensus 505 ~~~~~~~~~~~p~~~~~~~~L~~~~~~~g~~~~A~~~~~~m~~ 547 (689)
...++++++..|+++..+..++.++...|+.++|..+.+.+..
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 189 RAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 9999999999888888888999999999999999999887764
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.4e-07 Score=96.97 Aligned_cols=482 Identities=14% Similarity=0.155 Sum_probs=240.6
Q ss_pred HHHHHhhcccccCCCCHHHHHHHHhcccC----CCChhhHHHHHHHHHhCCCchHHHHHHHHhHhCCCCCCcccHHHHHH
Q 036237 55 ISSRLLSLYVDPHINNLHYARSIFDRILQ----HPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIK 130 (689)
Q Consensus 55 ~~~~ll~~~~~~~~g~~~~A~~~f~~~~~----~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~ 130 (689)
+|-.-+....+ .|++..-+++|+.... ......|...+......|-++-++.+|++.++. .|. .-+-.+.
T Consensus 104 Iwl~Ylq~l~~--Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~--~P~--~~eeyie 177 (835)
T KOG2047|consen 104 IWLDYLQFLIK--QGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV--APE--AREEYIE 177 (835)
T ss_pred HHHHHHHHHHh--cchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc--CHH--HHHHHHH
Confidence 33334444555 7788888888876432 233456888888888888888888888888764 232 2555667
Q ss_pred HHHhcCChHHHHHHHHHHHHhC------CCCchhHHHHHHHHHHhcCCh---HHHHHHHhhCCCC--C--eehHHHHHHH
Q 036237 131 GAARLGAIKEGKQIHGLVFKLG------FGFDKFVLSSLVSMYAKFGEI---DLGRRVFDAMDDK--D--LVSWNCLIDG 197 (689)
Q Consensus 131 ~~~~~~~~~~a~~~~~~~~~~g------~~~~~~~~~~li~~~~~~g~~---~~A~~~~~~m~~~--~--~~~~~~li~~ 197 (689)
.++..+++++|.+.++.++... -+.+...|.-+-+..++.-+. -....+++.+..+ | ...|++|.+-
T Consensus 178 ~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdY 257 (835)
T KOG2047|consen 178 YLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADY 257 (835)
T ss_pred HHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHH
Confidence 7778888888888887765331 144555677666666654432 2344455555432 2 3579999999
Q ss_pred HHhCCChHHHHHHHhhCCCC--CcchHHHHHHHHHhCC----------------C------hHHHHHHHhhcCcCCcchH
Q 036237 198 YVKKGEVEVAMKLFDEMPDR--DLFSWTCLVDGFSKCG----------------K------VEIAREIFYRMPNRNLVSW 253 (689)
Q Consensus 198 ~~~~g~~~~A~~~~~~m~~~--d~~~~~~li~~~~~~g----------------~------~~~A~~~~~~~~~~~~~~~ 253 (689)
|.+.|.++.|..+|++.... .+.-|+.+.++|++-. + ++-...-|+.+....+...
T Consensus 258 YIr~g~~ekarDvyeeai~~v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~l 337 (835)
T KOG2047|consen 258 YIRSGLFEKARDVYEEAIQTVMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLL 337 (835)
T ss_pred HHHhhhhHHHHHHHHHHHHhheehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHH
Confidence 99999999999999887652 2233444444433211 1 1122222332222111111
Q ss_pred HHHH-------------HHHHhcCCHHHHHHHHHhcCCC---------ChHHHHHHHHHHHHcCChHHHHHHHHHhccCC
Q 036237 254 NAMI-------------NGYMKAGDVDSACELFDDMEIR---------DLITWNSMIAGYELNGRFMEALELLETMLIGD 311 (689)
Q Consensus 254 ~~li-------------~~~~~~g~~~~A~~~~~~~~~~---------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 311 (689)
|+++ ..-.-.|+..+-..+|.+.... -...|-.+...|-.+|+.+.|..+|++..+..
T Consensus 338 NsVlLRQn~~nV~eW~kRV~l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~ 417 (835)
T KOG2047|consen 338 NSVLLRQNPHNVEEWHKRVKLYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVP 417 (835)
T ss_pred HHHHHhcCCccHHHHHhhhhhhcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCC
Confidence 1100 0000112222223333322110 11235555555555555555555555554322
Q ss_pred CCcChhhHHHHHHHH----HcccchhhHHHHHHHHHHh-----------CCcc------chhHHhHHHhhHHhcCCHHHH
Q 036237 312 VLPNDATLVSALSAV----AGLAVLNKGRWMHSYIVKN-----------GFVV------DGVLGTLLIQMYSKCGSIESA 370 (689)
Q Consensus 312 ~~p~~~t~~~ll~a~----~~~~~~~~a~~i~~~~~~~-----------g~~~------~~~~~~~li~~~~~~g~~~~A 370 (689)
.+ ...-...+-..+ .+..+++.|..+.+.+... +.++ +..+|+..++.--..|-++..
T Consensus 418 y~-~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfest 496 (835)
T KOG2047|consen 418 YK-TVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFEST 496 (835)
T ss_pred cc-chHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHH
Confidence 11 111111111111 1222333444433332210 0111 223344444544555666666
Q ss_pred HHHHHhcCCCChhhHHHH---HHHHHHcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHh---ccCcHHHHHHHHHHh
Q 036237 371 LTVFRAISKKKVGHWTAM---IVGLGMHGMATQALDLFNKMCRMGMKPTAI-TFIGVLNACS---HAGLVNDGRRYFNMM 443 (689)
Q Consensus 371 ~~~~~~~~~~~~~~~~~l---i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~---~~g~~~~a~~~~~~~ 443 (689)
..+++++.+-.+.|=..+ ...+-.+.-++++.+.+++-+..=-.|+.. .|+..|.-+. ....++.|+.+|++.
T Consensus 497 k~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqa 576 (835)
T KOG2047|consen 497 KAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQA 576 (835)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 666666654222221111 112334555666666666654432234433 3333333222 234567777777777
Q ss_pred HHhcCCCCCh--hHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCC
Q 036237 444 INDYGIEPTI--EHYGCLVDILCRTGYLEEAKSTIESMP--MRPN--FVIWMSLLSGARNHGNKDIGEYAANNLIKVAPD 517 (689)
Q Consensus 444 ~~~~~~~p~~--~~~~~li~~~~~~g~~~~A~~~~~~~~--~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 517 (689)
.+ +.+|.. ..|-.....=.+-|....|+++++++. +++. ...|+..|.--...=-+..-..+|+++++.-|+
T Consensus 577 L~--~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~v~~a~~l~myni~I~kaae~yGv~~TR~iYekaIe~Lp~ 654 (835)
T KOG2047|consen 577 LD--GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSAVKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIESLPD 654 (835)
T ss_pred Hh--cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHhCCh
Confidence 63 555542 222222233334566667777777663 2221 235555555433333344556667777776665
Q ss_pred Cchh--HHHHHHHHHhcCCcchHHHHHHHH
Q 036237 518 TIGC--YVVLSNIYAAAGQWDKVSEVREMM 545 (689)
Q Consensus 518 ~~~~--~~~L~~~~~~~g~~~~A~~~~~~m 545 (689)
+-.- -...+++=.+.|..+.|+.++..-
T Consensus 655 ~~~r~mclrFAdlEtklGEidRARaIya~~ 684 (835)
T KOG2047|consen 655 SKAREMCLRFADLETKLGEIDRARAIYAHG 684 (835)
T ss_pred HHHHHHHHHHHHHhhhhhhHHHHHHHHHhh
Confidence 4322 223445555667777777766543
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.24 E-value=6.2e-08 Score=98.83 Aligned_cols=182 Identities=11% Similarity=0.151 Sum_probs=122.3
Q ss_pred hHHHhhHHhcCCHHHHHHHHHhcCCCC-hhhHHHHHHHH--HHcCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHhc
Q 036237 355 TLLIQMYSKCGSIESALTVFRAISKKK-VGHWTAMIVGL--GMHGMATQALDLFNKMCRMGMKPTA--ITFIGVLNACSH 429 (689)
Q Consensus 355 ~~li~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~li~~~--~~~g~~~~A~~l~~~m~~~g~~p~~--~t~~~ll~a~~~ 429 (689)
+.++.+|. +..+.+.++-...+... ...+.+++... .+...+.+|.+++....+. .|.. +.....+.-...
T Consensus 313 ~~lL~l~t--nk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~--~p~~s~~v~L~~aQl~is 388 (652)
T KOG2376|consen 313 NALLALFT--NKMDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADG--HPEKSKVVLLLRAQLKIS 388 (652)
T ss_pred HHHHHHHh--hhHHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcc--CCchhHHHHHHHHHHHHh
Confidence 45556654 55667777777766533 23344444433 2233577888888887763 4444 344445566778
Q ss_pred cCcHHHHHHHHH--------HhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC--------CCCCCH-HHHHHHH
Q 036237 430 AGLVNDGRRYFN--------MMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESM--------PMRPNF-VIWMSLL 492 (689)
Q Consensus 430 ~g~~~~a~~~~~--------~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~--------~~~p~~-~~~~~ll 492 (689)
.|+++.|.+++. .+. +.+.. +.+..+++.+|.+.+.-+-|..++++. ..++.. .+|.-+.
T Consensus 389 ~gn~~~A~~il~~~~~~~~ss~~-~~~~~--P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa 465 (652)
T KOG2376|consen 389 QGNPEVALEILSLFLESWKSSIL-EAKHL--PGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAA 465 (652)
T ss_pred cCCHHHHHHHHHHHhhhhhhhhh-hhccC--hhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHh
Confidence 999999999998 444 23334 445667889999999877777777665 222222 2344444
Q ss_pred HHHHhcCChHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCcchHHHHHHH
Q 036237 493 SGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREM 544 (689)
Q Consensus 493 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~~~~~g~~~~A~~~~~~ 544 (689)
.--.++|+.++|...++++++.+|++..+...+..+|++. +.+.|..+-+.
T Consensus 466 ~f~lr~G~~~ea~s~leel~k~n~~d~~~l~~lV~a~~~~-d~eka~~l~k~ 516 (652)
T KOG2376|consen 466 EFKLRHGNEEEASSLLEELVKFNPNDTDLLVQLVTAYARL-DPEKAESLSKK 516 (652)
T ss_pred HHHHhcCchHHHHHHHHHHHHhCCchHHHHHHHHHHHHhc-CHHHHHHHhhc
Confidence 4456779999999999999999999999999999999876 34566655443
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.24 E-value=9.2e-09 Score=100.27 Aligned_cols=277 Identities=12% Similarity=0.084 Sum_probs=178.5
Q ss_pred cCCHHHHHHHHHhcCCC---ChHHHHHHHHHHHHcCChHHHHHHHHHhccCCCCcChhhHHHHHHHHHcccchhhHHHHH
Q 036237 263 AGDVDSACELFDDMEIR---DLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMH 339 (689)
Q Consensus 263 ~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~ 339 (689)
.|++..|+++..+-.+. .+..|..-+.+--+.|+.+.+-.++.+.-+.--.++...+.+........|+.+.|..-.
T Consensus 97 eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v 176 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENV 176 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHH
Confidence 57788888877765432 334444455566667778888888777765322333344444455566777777777777
Q ss_pred HHHHHhCCccchhHHhHHHhhHHhcCCHHHHHHHHHhcCCCCh-----------hhHHHHHHHHHHcCCHHHHHHHHHHH
Q 036237 340 SYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKV-----------GHWTAMIVGLGMHGMATQALDLFNKM 408 (689)
Q Consensus 340 ~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-----------~~~~~li~~~~~~g~~~~A~~l~~~m 408 (689)
..+.+.+ +.++.+.....+.|.+.|++.....++..+.+... .+|+.++.-....+..+.-...|+..
T Consensus 177 ~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~ 255 (400)
T COG3071 177 DQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQ 255 (400)
T ss_pred HHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhc
Confidence 7776665 33466667777778888888888888777776322 24555555555444444444455554
Q ss_pred HHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC--CCCCCHH
Q 036237 409 CRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESM--PMRPNFV 486 (689)
Q Consensus 409 ~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~--~~~p~~~ 486 (689)
... .+-+...-.+++.-+.+.|+.++|.++..+..++ +..|+... ++ ...+-++.+.=.+..++- ..+.++.
T Consensus 256 pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~-~~D~~L~~---~~-~~l~~~d~~~l~k~~e~~l~~h~~~p~ 329 (400)
T COG3071 256 PRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKR-QWDPRLCR---LI-PRLRPGDPEPLIKAAEKWLKQHPEDPL 329 (400)
T ss_pred cHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHh-ccChhHHH---HH-hhcCCCCchHHHHHHHHHHHhCCCChh
Confidence 432 3444555556666677777888887777777643 55555111 11 122333333333332221 1123457
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCcchHHHHHHHHHh
Q 036237 487 IWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKK 547 (689)
Q Consensus 487 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~~~~~g~~~~A~~~~~~m~~ 547 (689)
.+.+|...|.+++.+.+|...++.+++..| +...|..++.+|.+.|+..+|.+++++...
T Consensus 330 L~~tLG~L~~k~~~w~kA~~~leaAl~~~~-s~~~~~~la~~~~~~g~~~~A~~~r~e~L~ 389 (400)
T COG3071 330 LLSTLGRLALKNKLWGKASEALEAALKLRP-SASDYAELADALDQLGEPEEAEQVRREALL 389 (400)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHhcCC-ChhhHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 888999999999999999999999999888 457899999999999999999999887653
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.23 E-value=1.4e-11 Score=86.60 Aligned_cols=50 Identities=36% Similarity=0.589 Sum_probs=45.9
Q ss_pred CChhhHHHHHHHHHhCCCchHHHHHHHHhHhCCCCCCcccHHHHHHHHHh
Q 036237 85 PSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAAR 134 (689)
Q Consensus 85 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 134 (689)
||+++||++|.+|++.|++++|+++|++|.+.|+.||..||+.+|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 78999999999999999999999999999999999999999999998874
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.22 E-value=4.3e-10 Score=118.96 Aligned_cols=267 Identities=13% Similarity=0.135 Sum_probs=196.6
Q ss_pred HHHHHhccCCCCcChhhHHHHHHHHHcccchhhHHHHHHHHHHhCCccchhHHhHHHhhHHhcCCHHHHHHHHHhcCCCC
Q 036237 302 ELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKK 381 (689)
Q Consensus 302 ~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 381 (689)
.++..+...|+.|+.+||.+++..|+..|+.+.|- ++..|.-...+.+..+++.++......++.+.+. ++.
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-------ep~ 82 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-------EPL 82 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-------CCc
Confidence 45677888999999999999999999999999999 9999999999999999999999999998887665 678
Q ss_pred hhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHH
Q 036237 382 VGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVD 461 (689)
Q Consensus 382 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 461 (689)
..+|+.|..+|.++|+..- ++..++ -...+...++..|.-..-..++..+.-..+.-||. ...+.
T Consensus 83 aDtyt~Ll~ayr~hGDli~-fe~veq-----------dLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda---~n~il 147 (1088)
T KOG4318|consen 83 ADTYTNLLKAYRIHGDLIL-FEVVEQ-----------DLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDA---ENAIL 147 (1088)
T ss_pred hhHHHHHHHHHHhccchHH-HHHHHH-----------HHHHHHhhhhhhccCcHHHHHHhhcccCcccchhH---HHHHH
Confidence 8899999999999999866 333333 12234455666666666666665544333455554 34566
Q ss_pred HHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-ChHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCcchHHH
Q 036237 462 ILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHG-NKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSE 540 (689)
Q Consensus 462 ~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g-~~~~a~~~~~~~~~~~p~~~~~~~~L~~~~~~~g~~~~A~~ 540 (689)
.+.-.|.++.+.+++..+|...-......++.-+..-. .++.-..+.+...+ .| ++.+|..+...-..+|+.+.|..
T Consensus 148 llv~eglwaqllkll~~~Pvsa~~~p~~vfLrqnv~~ntpvekLl~~cksl~e-~~-~s~~l~a~l~~alaag~~d~Ak~ 225 (1088)
T KOG4318|consen 148 LLVLEGLWAQLLKLLAKVPVSAWNAPFQVFLRQNVVDNTPVEKLLNMCKSLVE-AP-TSETLHAVLKRALAAGDVDGAKN 225 (1088)
T ss_pred HHHHHHHHHHHHHHHhhCCcccccchHHHHHHHhccCCchHHHHHHHHHHhhc-CC-ChHHHHHHHHHHHhcCchhhHHH
Confidence 77788999999999999873321111222344444433 33433334444444 45 67899999999999999999999
Q ss_pred HHHHHHhCCCccCCcccEEEECCEEEEEeeCCCCCcChHHHHHHHHHHHHHHHHCCCCCCCccccccc
Q 036237 541 VREMMKKRGFRKDPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCI 608 (689)
Q Consensus 541 ~~~~m~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~l~~l~~~m~~~g~~pd~~~~~~~~ 608 (689)
++.+|+++|+.-.+.+.|-.+-+ .+ ...-++.+.+-|++.|+.||..+...-+
T Consensus 226 ll~emke~gfpir~HyFwpLl~g------~~---------~~q~~e~vlrgmqe~gv~p~seT~adyv 278 (1088)
T KOG4318|consen 226 LLYEMKEKGFPIRAHYFWPLLLG------IN---------AAQVFEFVLRGMQEKGVQPGSETQADYV 278 (1088)
T ss_pred HHHHHHHcCCCcccccchhhhhc------Cc---------cchHHHHHHHHHHHhcCCCCcchhHHHH
Confidence 99999999999888888865443 11 1233467788899999999999875433
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.21 E-value=3.6e-11 Score=84.49 Aligned_cols=50 Identities=28% Similarity=0.459 Sum_probs=46.5
Q ss_pred CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc
Q 036237 380 KKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSH 429 (689)
Q Consensus 380 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~ 429 (689)
||+++||++|.+|++.|++++|.++|++|.+.|+.||..||+.++++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 68899999999999999999999999999999999999999999999874
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.21 E-value=9.6e-09 Score=97.06 Aligned_cols=285 Identities=14% Similarity=0.111 Sum_probs=179.4
Q ss_pred CHHHHHHHHHhcCCCChHHH---HHHHHHHHHcCChHHHHHHHHHhccCCCCcChh------hHHHHHHHHHcccchhhH
Q 036237 265 DVDSACELFDDMEIRDLITW---NSMIAGYELNGRFMEALELLETMLIGDVLPNDA------TLVSALSAVAGLAVLNKG 335 (689)
Q Consensus 265 ~~~~A~~~~~~~~~~~~~~~---~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~------t~~~ll~a~~~~~~~~~a 335 (689)
+.++|.++|-+|.+.|..++ -+|.+.|.+.|..+.|+.+-+.+... ||.. ..-.+..-|...|-+|.|
T Consensus 50 Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s---pdlT~~qr~lAl~qL~~Dym~aGl~DRA 126 (389)
T COG2956 50 QPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES---PDLTFEQRLLALQQLGRDYMAAGLLDRA 126 (389)
T ss_pred CcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC---CCCchHHHHHHHHHHHHHHHHhhhhhHH
Confidence 44444444444444333322 23444455555555555555444432 2211 111223334445555555
Q ss_pred HHHHHHHHHhCCccchhHHhHHHhhHHhcCCHHHHHHHHHhcCCCChh--------hHHHHHHHHHHcCCHHHHHHHHHH
Q 036237 336 RWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVG--------HWTAMIVGLGMHGMATQALDLFNK 407 (689)
Q Consensus 336 ~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~--------~~~~li~~~~~~g~~~~A~~l~~~ 407 (689)
+.+|..+.+.+. .-......|+..|-+..+|++|+++-+++.+-+.. .|--+...+....+.+.|..++.+
T Consensus 127 E~~f~~L~de~e-fa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~k 205 (389)
T COG2956 127 EDIFNQLVDEGE-FAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKK 205 (389)
T ss_pred HHHHHHHhcchh-hhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 555555554331 12334455777788888888888877766543222 344556666677899999999999
Q ss_pred HHHCCCCCCHHHH-HHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCH
Q 036237 408 MCRMGMKPTAITF-IGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESM-PMRPNF 485 (689)
Q Consensus 408 m~~~g~~p~~~t~-~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~ 485 (689)
..+. .|+.+-- ..+.......|+++.|.+.++.+.+. ...--..+...|..+|...|+.++...++.++ ...+..
T Consensus 206 Alqa--~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQ-n~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~ 282 (389)
T COG2956 206 ALQA--DKKCVRASIILGRVELAKGDYQKAVEALERVLEQ-NPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTGA 282 (389)
T ss_pred HHhh--CccceehhhhhhHHHHhccchHHHHHHHHHHHHh-ChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCc
Confidence 9884 5665533 34457788999999999999999843 32333677888999999999999999999876 344555
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchhHHHHHHHHH---hcCCcchHHHHHHHHHhCCCccCCccc
Q 036237 486 VIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYA---AAGQWDKVSEVREMMKKRGFRKDPGSS 557 (689)
Q Consensus 486 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~~~---~~g~~~~A~~~~~~m~~~~~~~~~~~~ 557 (689)
..-..+..--....-.+.|...+.+-+...|.- ..+..|+..-. ..|++.+...++..|....++..|.+-
T Consensus 283 ~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~-~gf~rl~~~~l~daeeg~~k~sL~~lr~mvge~l~~~~~YR 356 (389)
T COG2956 283 DAELMLADLIELQEGIDAAQAYLTRQLRRKPTM-RGFHRLMDYHLADAEEGRAKESLDLLRDMVGEQLRRKPRYR 356 (389)
T ss_pred cHHHHHHHHHHHhhChHHHHHHHHHHHhhCCcH-HHHHHHHHhhhccccccchhhhHHHHHHHHHHHHhhcCCce
Confidence 555555555555556778888888888888854 44555555432 356788888899999877777666543
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.20 E-value=3.9e-09 Score=110.27 Aligned_cols=191 Identities=13% Similarity=0.187 Sum_probs=141.6
Q ss_pred HHHhhHHhcCCHHHHHHHHHhcCC-------C-C---hhhHHHHHHHHHHcCCHHHHHHHHHHHHH-----CCCCCC-HH
Q 036237 356 LLIQMYSKCGSIESALTVFRAISK-------K-K---VGHWTAMIVGLGMHGMATQALDLFNKMCR-----MGMKPT-AI 418 (689)
Q Consensus 356 ~li~~~~~~g~~~~A~~~~~~~~~-------~-~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~-----~g~~p~-~~ 418 (689)
.+...|...+++++|..+|+++.. + + ..+++.|...|...|++++|...+++..+ .|..+. ..
T Consensus 246 ~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~ 325 (508)
T KOG1840|consen 246 ILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVA 325 (508)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHH
Confidence 456667777777777777776643 1 1 23677777788888888887777666543 232222 22
Q ss_pred -HHHHHHHHHhccCcHHHHHHHHHHhHHhcC--CCCC----hhHHHHHHHHHHhcCCHHHHHHHHHhC---------CCC
Q 036237 419 -TFIGVLNACSHAGLVNDGRRYFNMMINDYG--IEPT----IEHYGCLVDILCRTGYLEEAKSTIESM---------PMR 482 (689)
Q Consensus 419 -t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~--~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~~---------~~~ 482 (689)
-++.+...|...+.+++|..+++...+.+. +.++ ..+++.|..+|...|++++|.++++++ ...
T Consensus 326 ~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~ 405 (508)
T KOG1840|consen 326 AQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKD 405 (508)
T ss_pred HHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcC
Confidence 466677789999999999999987765443 2232 468999999999999999999999887 112
Q ss_pred CC-HHHHHHHHHHHHhcCChHHHHHHHHHHhh----cCCC---CchhHHHHHHHHHhcCCcchHHHHHHHHH
Q 036237 483 PN-FVIWMSLLSGARNHGNKDIGEYAANNLIK----VAPD---TIGCYVVLSNIYAAAGQWDKVSEVREMMK 546 (689)
Q Consensus 483 p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~----~~p~---~~~~~~~L~~~~~~~g~~~~A~~~~~~m~ 546 (689)
+. ...++.|..+|.+.+++++|.++|.+... ..|+ ...+|..|+.+|...|++++|.++.+...
T Consensus 406 ~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 406 YGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred hhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 22 44678899999999999999999988765 3344 45578899999999999999999998875
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.14 E-value=1.2e-07 Score=92.52 Aligned_cols=279 Identities=13% Similarity=0.112 Sum_probs=192.7
Q ss_pred CCChHHHHHHHhhCCCC---CcchHHHHHHHHHhCCChHHHHHHHhhcCcC----CcchHHHHHHHHHhcCCHHHHHHHH
Q 036237 201 KGEVEVAMKLFDEMPDR---DLFSWTCLVDGFSKCGKVEIAREIFYRMPNR----NLVSWNAMINGYMKAGDVDSACELF 273 (689)
Q Consensus 201 ~g~~~~A~~~~~~m~~~---d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~li~~~~~~g~~~~A~~~~ 273 (689)
.|++..|.++..+-.+. ....|..-..+.-+.|+.+.+-.++.++.+. ...++-+........|+++.|..-.
T Consensus 97 eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v 176 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENV 176 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHH
Confidence 58999999998886552 2334555556677889999999998888764 2556666777788888888888776
Q ss_pred HhcC---CCChHHHHHHHHHHHHcCChHHHHHHHHHhccCCCCcChhhHHHHHHHHHcccchhhHHHHHHHHHHhCCccc
Q 036237 274 DDME---IRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVD 350 (689)
Q Consensus 274 ~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~ 350 (689)
+++. .+++........+|.+.|++.+...+...|.+.|+--|+..- ++ .
T Consensus 177 ~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~-----------------~l-----------e 228 (400)
T COG3071 177 DQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAA-----------------RL-----------E 228 (400)
T ss_pred HHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHH-----------------HH-----------H
Confidence 6654 457788888888899999999999998888887765443210 00 0
Q ss_pred hhHHhHHHhhHHhcCCHHHHHHHHHhcCC---CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 036237 351 GVLGTLLIQMYSKCGSIESALTVFRAISK---KKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNAC 427 (689)
Q Consensus 351 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~ 427 (689)
..++..+++-....+..+.-...++..+. .++..-.+++.-+.+.|+.++|.++.++..+.+..|+-. .+-.+
T Consensus 229 ~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~----~~~~~ 304 (400)
T COG3071 229 QQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLC----RLIPR 304 (400)
T ss_pred HHHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHH----HHHhh
Confidence 11222333333333333333334444442 345566666777777888888888888877777777622 22356
Q ss_pred hccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCChHHHHH
Q 036237 428 SHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESM-PMRPNFVIWMSLLSGARNHGNKDIGEY 506 (689)
Q Consensus 428 ~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~ll~~~~~~g~~~~a~~ 506 (689)
.+.++...-++..+...+.++..| ..+.+|...|.+.+.|.+|.+.|+.. +.+|+..+|+-+..++.+.|+.+.|.+
T Consensus 305 l~~~d~~~l~k~~e~~l~~h~~~p--~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~~~g~~~~A~~ 382 (400)
T COG3071 305 LRPGDPEPLIKAAEKWLKQHPEDP--LLLSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELADALDQLGEPEEAEQ 382 (400)
T ss_pred cCCCCchHHHHHHHHHHHhCCCCh--hHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHcCChHHHHH
Confidence 667777777777777665444444 67778888888888888888888864 567888888888888888888888888
Q ss_pred HHHHHhh
Q 036237 507 AANNLIK 513 (689)
Q Consensus 507 ~~~~~~~ 513 (689)
..++.+-
T Consensus 383 ~r~e~L~ 389 (400)
T COG3071 383 VRREALL 389 (400)
T ss_pred HHHHHHH
Confidence 8887764
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.13 E-value=5.1e-07 Score=88.23 Aligned_cols=266 Identities=9% Similarity=0.018 Sum_probs=197.5
Q ss_pred CCcchHHHHHHHHHhcCCHHHHHHHHHhcCCCChHHHHH---HHHHHHHcCChHHHHHHHHHhccCCCCcChhhHHHHHH
Q 036237 248 RNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNS---MIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALS 324 (689)
Q Consensus 248 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~---li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 324 (689)
.|+....++.+.|...|+.++|+..|++...-|+.+... ..-.+.+.|+.++...+...+.... +-....|..-+.
T Consensus 230 ~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~ 308 (564)
T KOG1174|consen 230 CNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQ 308 (564)
T ss_pred ccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhh
Confidence 568888999999999999999999999877655443332 2334567888888888877776421 122223333333
Q ss_pred HHHcccchhhHHHHHHHHHHhCCccchhHHhHHHhhHHhcCCHHHHHHHHHhcCC---CChhhHHHHHHHHHHcCCHHHH
Q 036237 325 AVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISK---KKVGHWTAMIVGLGMHGMATQA 401 (689)
Q Consensus 325 a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A 401 (689)
......+++.|..+-+..++.+. .+...+-.-...+...|+.++|.-.|+.... -+..+|..|+.+|...|++.+|
T Consensus 309 ~l~~~K~~~rAL~~~eK~I~~~~-r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA 387 (564)
T KOG1174|consen 309 LLYDEKKFERALNFVEKCIDSEP-RNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEA 387 (564)
T ss_pred hhhhhhhHHHHHHHHHHHhccCc-ccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHH
Confidence 44456677777777777666542 2333443345667788999999999998764 3788999999999999999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHH-HHHh-ccCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHh
Q 036237 402 LDLFNKMCRMGMKPTAITFIGVL-NACS-HAGLVNDGRRYFNMMINDYGIEPT-IEHYGCLVDILCRTGYLEEAKSTIES 478 (689)
Q Consensus 402 ~~l~~~m~~~g~~p~~~t~~~ll-~a~~-~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~ 478 (689)
.-+-+...+. +..+..+...+. ..|. ....-++|.+++++.. .+.|+ ....+.+..++.+.|+.+++..++++
T Consensus 388 ~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L---~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~ 463 (564)
T KOG1174|consen 388 NALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSL---KINPIYTPAVNLIAELCQVEGPTKDIIKLLEK 463 (564)
T ss_pred HHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhh---ccCCccHHHHHHHHHHHHhhCccchHHHHHHH
Confidence 9887775542 233444554442 2232 3334578999998877 57787 56778889999999999999999998
Q ss_pred C-CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCc
Q 036237 479 M-PMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTI 519 (689)
Q Consensus 479 ~-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 519 (689)
. ...||...-+.|...++..+.+++|...|..++.++|++-
T Consensus 464 ~L~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~ 505 (564)
T KOG1174|consen 464 HLIIFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSK 505 (564)
T ss_pred HHhhccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccch
Confidence 5 5679999999999999999999999999999999999874
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.12 E-value=3.2e-07 Score=93.35 Aligned_cols=275 Identities=11% Similarity=-0.014 Sum_probs=210.2
Q ss_pred CcchHHHHHHHHHhcCCHHHHHHHHHhcCCCC---hHHHHHHHHHHHHcCChHHHHHHHHHhccCCCCcChhhHHHHHHH
Q 036237 249 NLVSWNAMINGYMKAGDVDSACELFDDMEIRD---LITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSA 325 (689)
Q Consensus 249 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a 325 (689)
++.+.....+-+...+++.+..++++.+.+.| ...+..-|..+...|+..+-..+=.+|.+. .+-...+|-++..-
T Consensus 243 ~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aVg~Y 321 (611)
T KOG1173|consen 243 NLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAVGCY 321 (611)
T ss_pred cHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhHHHH
Confidence 35566666777888899999999999887654 445666677888899888887777787764 34566788888888
Q ss_pred HHcccchhhHHHHHHHHHHhCCccchhHHhHHHhhHHhcCCHHHHHHHHHhcCC--CC-hhhHHHHHHHHHHcCCHHHHH
Q 036237 326 VAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISK--KK-VGHWTAMIVGLGMHGMATQAL 402 (689)
Q Consensus 326 ~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~-~~~~~~li~~~~~~g~~~~A~ 402 (689)
|...|...+|+..+......... -...|-.+...|+-.|.-|.|...+....+ ++ -..+--+..-|.+.++.+-|.
T Consensus 322 Yl~i~k~seARry~SKat~lD~~-fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kLAe 400 (611)
T KOG1173|consen 322 YLMIGKYSEARRYFSKATTLDPT-FGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLAE 400 (611)
T ss_pred HHHhcCcHHHHHHHHHHhhcCcc-ccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHHHH
Confidence 88899999999999887654321 245677788889999999999888876654 21 122333455688889999999
Q ss_pred HHHHHHHHCCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhHHhc-CCC----CChhHHHHHHHHHHhcCCHHHHHHHH
Q 036237 403 DLFNKMCRMGMKPT-AITFIGVLNACSHAGLVNDGRRYFNMMINDY-GIE----PTIEHYGCLVDILCRTGYLEEAKSTI 476 (689)
Q Consensus 403 ~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~-~~~----p~~~~~~~li~~~~~~g~~~~A~~~~ 476 (689)
+.|.+... +.|+ +...+-+.-..-+.+.+.+|..+|+.....- .+. -...+++.|..+|.+.+++++|+..+
T Consensus 401 ~Ff~~A~a--i~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~ 478 (611)
T KOG1173|consen 401 KFFKQALA--IAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYY 478 (611)
T ss_pred HHHHHHHh--cCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHH
Confidence 99999876 5665 5566666656667889999999998876211 111 13456899999999999999999999
Q ss_pred HhC-C-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchhHHHHHH
Q 036237 477 ESM-P-MRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSN 527 (689)
Q Consensus 477 ~~~-~-~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~ 527 (689)
++. . .+.|..++.++.-.+...|+++.|+..|.+++.+.|++..+-..|..
T Consensus 479 q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~ 531 (611)
T KOG1173|consen 479 QKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLKL 531 (611)
T ss_pred HHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHH
Confidence 986 2 33478899999999999999999999999999999998655555543
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.12 E-value=1.3e-08 Score=111.55 Aligned_cols=241 Identities=13% Similarity=0.005 Sum_probs=174.0
Q ss_pred ChHHHHHHHHHhccCCCCcChh-hHHHHHHHHH---------cccchhhHHHHHHHHHHhCCccchhHHhHHHhhHHhcC
Q 036237 296 RFMEALELLETMLIGDVLPNDA-TLVSALSAVA---------GLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCG 365 (689)
Q Consensus 296 ~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~---------~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g 365 (689)
..++|+.+|++..+. .|+.. .+..+..++. ..+++++|...++.+++.. +.+...+..+...+...|
T Consensus 276 ~~~~A~~~~~~Al~l--dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ld-P~~~~a~~~lg~~~~~~g 352 (553)
T PRK12370 276 SLQQALKLLTQCVNM--SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELD-HNNPQALGLLGLINTIHS 352 (553)
T ss_pred HHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcc
Confidence 356888888888764 45433 3333333322 2244778888888888775 346777888888899999
Q ss_pred CHHHHHHHHHhcCC---CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccCcHHHHHHHHH
Q 036237 366 SIESALTVFRAISK---KKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAI-TFIGVLNACSHAGLVNDGRRYFN 441 (689)
Q Consensus 366 ~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~ 441 (689)
++++|...|++..+ .+...|..+...|...|++++|+..+++..+ +.|+.. .+..++..+...|++++|...++
T Consensus 353 ~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~--l~P~~~~~~~~~~~~~~~~g~~eeA~~~~~ 430 (553)
T PRK12370 353 EYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLK--LDPTRAAAGITKLWITYYHTGIDDAIRLGD 430 (553)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCChhhHHHHHHHHHhccCHHHHHHHHH
Confidence 99999999998775 3456788899999999999999999999998 456543 33334445667899999999999
Q ss_pred HhHHhcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhCC-CCCCHH-HHHHHHHHHHhcCChHHHHHHHHHHhh---cC
Q 036237 442 MMINDYGIEPT-IEHYGCLVDILCRTGYLEEAKSTIESMP-MRPNFV-IWMSLLSGARNHGNKDIGEYAANNLIK---VA 515 (689)
Q Consensus 442 ~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~---~~ 515 (689)
++... ..|+ +..+..+...|...|++++|...+.++. ..|+.. .++.+...+...| +.|...++++++ ..
T Consensus 431 ~~l~~--~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~ 506 (553)
T PRK12370 431 ELRSQ--HLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQRI 506 (553)
T ss_pred HHHHh--ccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHh
Confidence 88742 2354 5567888899999999999999998863 445544 4555666667777 477777777766 33
Q ss_pred CCCchhHHHHHHHHHhcCCcchHHHHHHHHHhCC
Q 036237 516 PDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRG 549 (689)
Q Consensus 516 p~~~~~~~~L~~~~~~~g~~~~A~~~~~~m~~~~ 549 (689)
|.++ ..+...|.-.|+-+.+..+ +++.+.|
T Consensus 507 ~~~~---~~~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 507 DNNP---GLLPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred hcCc---hHHHHHHHHHhhhHHHHHH-HHhhccc
Confidence 4433 3367777888888877776 7777654
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.10 E-value=7.9e-07 Score=93.79 Aligned_cols=389 Identities=13% Similarity=0.062 Sum_probs=247.4
Q ss_pred CCCCchhHHHHHHHHHHhcCChHHHHHHHhhCCC---CCeehHHHHHHHHHhCCChHHHHHHHhhCCC----CCcchHHH
Q 036237 152 GFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDD---KDLVSWNCLIDGYVKKGEVEVAMKLFDEMPD----RDLFSWTC 224 (689)
Q Consensus 152 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~d~~~~~~ 224 (689)
.+.-|..+|..|.-+...+|+++.+.+.|++... .....|+.+-..|...|.-..|..+.+.-.. |+..+--.
T Consensus 318 ~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~L 397 (799)
T KOG4162|consen 318 KFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLL 397 (799)
T ss_pred hhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHH
Confidence 3556788899998999999999999999988764 3456799999999999999999999887654 22233222
Q ss_pred HH-HHHH-hCCChHHHHHHHhhcCc--------CCcchHHHHHHHHHhcC-----------CHHHHHHHHHhcCCC---C
Q 036237 225 LV-DGFS-KCGKVEIAREIFYRMPN--------RNLVSWNAMINGYMKAG-----------DVDSACELFDDMEIR---D 280 (689)
Q Consensus 225 li-~~~~-~~g~~~~A~~~~~~~~~--------~~~~~~~~li~~~~~~g-----------~~~~A~~~~~~~~~~---~ 280 (689)
++ ..|. +.+.+++++.+-.++.. ..+..|-.+.-+|...- .-.++.+.+++..+. |
T Consensus 398 masklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~d 477 (799)
T KOG4162|consen 398 MASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTD 477 (799)
T ss_pred HHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 22 3333 45666776666555543 11444555555554321 234556666665432 3
Q ss_pred hHHHHHHHHHHHHcCChHHHHHHHHHhccCCCCcChhhHHHHHHHHHcccchhhHHHHHHHHHHhCCccchhHHhHHHhh
Q 036237 281 LITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQM 360 (689)
Q Consensus 281 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~ 360 (689)
+..---+.--|+..++.+.|++..++.++.+-.-+...|..+.-.++..+++..|+.+.+.....--. |-.....-+..
T Consensus 478 p~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~-N~~l~~~~~~i 556 (799)
T KOG4162|consen 478 PLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGD-NHVLMDGKIHI 556 (799)
T ss_pred chHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhh-hhhhchhhhhh
Confidence 32222233346677888888888888888766667777777777777788888888887766542110 00000001111
Q ss_pred HHhcCCHHHHHHHHHhcCC-------------------------------CC-hhhHHHHHHHHHHcCCHHHHHHHHHHH
Q 036237 361 YSKCGSIESALTVFRAISK-------------------------------KK-VGHWTAMIVGLGMHGMATQALDLFNKM 408 (689)
Q Consensus 361 ~~~~g~~~~A~~~~~~~~~-------------------------------~~-~~~~~~li~~~~~~g~~~~A~~l~~~m 408 (689)
-..-++.++|......+.. .+ +.++..+..- .+ -+...+..-.. |
T Consensus 557 ~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l-~a-~~~~~~~se~~-L 633 (799)
T KOG4162|consen 557 ELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSL-VA-SQLKSAGSELK-L 633 (799)
T ss_pred hhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHH-HH-hhhhhcccccc-c
Confidence 1122333333222211110 01 1122221111 11 11111100000 2
Q ss_pred HHCCCCCCH--------HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhC
Q 036237 409 CRMGMKPTA--------ITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEP-TIEHYGCLVDILCRTGYLEEAKSTIESM 479 (689)
Q Consensus 409 ~~~g~~p~~--------~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~ 479 (689)
...-+.|.. ..|......+...+..++|...+.+.. ++.| ....|......+...|.++||.+.|...
T Consensus 634 p~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~---~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~A 710 (799)
T KOG4162|consen 634 PSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEAS---KIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVA 710 (799)
T ss_pred CcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHH---hcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHH
Confidence 211122222 134455567888889999988887776 3444 4677888889999999999999998876
Q ss_pred -CCCCC-HHHHHHHHHHHHhcCChHHHHH--HHHHHhhcCCCCchhHHHHHHHHHhcCCcchHHHHHHHHHh
Q 036237 480 -PMRPN-FVIWMSLLSGARNHGNKDIGEY--AANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKK 547 (689)
Q Consensus 480 -~~~p~-~~~~~~ll~~~~~~g~~~~a~~--~~~~~~~~~p~~~~~~~~L~~~~~~~g~~~~A~~~~~~m~~ 547 (689)
.+.|+ +.+..++...+.+.|+...|.. ++..+++++|.++.++..|+.++.+.|+.++|.+-|....+
T Consensus 711 l~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~q 782 (799)
T KOG4162|consen 711 LALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQ 782 (799)
T ss_pred HhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHh
Confidence 46675 4588999999999999999988 99999999999999999999999999999999999998764
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.07 E-value=1.3e-08 Score=102.11 Aligned_cols=189 Identities=13% Similarity=0.080 Sum_probs=120.4
Q ss_pred hHHhHHHhhHHhcCCHHHHHHHHHhcCC---CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHH
Q 036237 352 VLGTLLIQMYSKCGSIESALTVFRAISK---KKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPT-AITFIGVLNAC 427 (689)
Q Consensus 352 ~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~ 427 (689)
..+..+...|.+.|+.++|...|++..+ .+...|+.+...|...|++++|++.|++..+ +.|+ ..++..+..++
T Consensus 65 ~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~--l~P~~~~a~~~lg~~l 142 (296)
T PRK11189 65 QLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLE--LDPTYNYAYLNRGIAL 142 (296)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHH
Confidence 4455666677777788887777776654 3456788888888888888888888888776 4565 44666677777
Q ss_pred hccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCChHHHH
Q 036237 428 SHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMP--MRPNFVIWMSLLSGARNHGNKDIGE 505 (689)
Q Consensus 428 ~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~ll~~~~~~g~~~~a~ 505 (689)
...|++++|.+.|+...+ ..|+..........+...+++++|.+.+.+.. ..|+. |.. .......|+...+
T Consensus 143 ~~~g~~~eA~~~~~~al~---~~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~~~~~--~~~-~~~~~~lg~~~~~- 215 (296)
T PRK11189 143 YYGGRYELAQDDLLAFYQ---DDPNDPYRALWLYLAESKLDPKQAKENLKQRYEKLDKEQ--WGW-NIVEFYLGKISEE- 215 (296)
T ss_pred HHCCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCccc--cHH-HHHHHHccCCCHH-
Confidence 778888888888887773 34543322222233445677888888875532 22332 221 1222334554433
Q ss_pred HHHHHHh-------hcCCCCchhHHHHHHHHHhcCCcchHHHHHHHHHhCC
Q 036237 506 YAANNLI-------KVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRG 549 (689)
Q Consensus 506 ~~~~~~~-------~~~p~~~~~~~~L~~~~~~~g~~~~A~~~~~~m~~~~ 549 (689)
..++.+. ++.|+.+.+|..|+.+|.+.|++++|...|++..+.+
T Consensus 216 ~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~ 266 (296)
T PRK11189 216 TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN 266 (296)
T ss_pred HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 2333332 3455666788888888888888888888888777644
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.07 E-value=4.1e-08 Score=95.14 Aligned_cols=197 Identities=19% Similarity=0.152 Sum_probs=113.0
Q ss_pred hHHHHHHHHHHHHcCChHHHHHHHHHhccCCCCcChhhHHHHHHHHHcccchhhHHHHHHHHHHhCCccchhHHhHHHhh
Q 036237 281 LITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQM 360 (689)
Q Consensus 281 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~ 360 (689)
...+..+...+...|++++|.+.+++..+.. |+ +...+..+...
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~--p~----------------------------------~~~~~~~la~~ 74 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHD--PD----------------------------------DYLAYLALALY 74 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--cc----------------------------------cHHHHHHHHHH
Confidence 4556677777777777777777777765432 22 22233334444
Q ss_pred HHhcCCHHHHHHHHHhcCC---CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCcHHHH
Q 036237 361 YSKCGSIESALTVFRAISK---KKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKP-TAITFIGVLNACSHAGLVNDG 436 (689)
Q Consensus 361 ~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a 436 (689)
|...|++++|.+.|++... .+...+..+...+...|++++|++.|++.......| ....+..+...+...|++++|
T Consensus 75 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 154 (234)
T TIGR02521 75 YQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKA 154 (234)
T ss_pred HHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHH
Confidence 5555555555555554432 233455555666666666666666666665532222 223444555566666777777
Q ss_pred HHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCC-C-CCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhc
Q 036237 437 RRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMP-M-RPNFVIWMSLLSGARNHGNKDIGEYAANNLIKV 514 (689)
Q Consensus 437 ~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~-~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 514 (689)
...++..... .+.+...+..+...+...|++++|...+++.. . +.+...+..+...+...|+.+.|....+.+.+.
T Consensus 155 ~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 232 (234)
T TIGR02521 155 EKYLTRALQI--DPQRPESLLELAELYYLRGQYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKL 232 (234)
T ss_pred HHHHHHHHHh--CcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 7777666631 12234556666677777777777777666541 1 234455555666666677777777766665544
Q ss_pred C
Q 036237 515 A 515 (689)
Q Consensus 515 ~ 515 (689)
.
T Consensus 233 ~ 233 (234)
T TIGR02521 233 F 233 (234)
T ss_pred C
Confidence 3
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.06 E-value=6.2e-09 Score=98.21 Aligned_cols=230 Identities=15% Similarity=0.120 Sum_probs=164.2
Q ss_pred HHHHHHHHHcCChHHHHHHHHHhccCCCCcChhhHHHHHHHHHcccchhhHHHHHHHHHHhCCccchhHHhHHHhhHHhc
Q 036237 285 NSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKC 364 (689)
Q Consensus 285 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~ 364 (689)
+.|..+|.+.|.+.+|.+.|+..++. .|-..||..+-.+|-+...+..|..++..-++. ++.|+....-....+-..
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~eam 303 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIHEAM 303 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHHHHH
Confidence 46677788888888888877777664 345556666667777777777777776665553 233444444455566666
Q ss_pred CCHHHHHHHHHhcCC---CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHH
Q 036237 365 GSIESALTVFRAISK---KKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFN 441 (689)
Q Consensus 365 g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~ 441 (689)
++.++|.++++...+ .++.+...+..+|.-.++++-|+..+++..+.|+. +...|+.+.-.|.-.+.+|-++.-|+
T Consensus 304 ~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf~ 382 (478)
T KOG1129|consen 304 EQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSFQ 382 (478)
T ss_pred HhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHHH
Confidence 777777777776654 34555666667777778888888888888877743 45666777777777777777777666
Q ss_pred HhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchh
Q 036237 442 MMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGC 521 (689)
Q Consensus 442 ~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 521 (689)
+.... .-.|+ .-..+|..|.......||+..|.+.|+-++.-+|++..+
T Consensus 383 RAlst-at~~~------------------------------~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ea 431 (478)
T KOG1129|consen 383 RALST-ATQPG------------------------------QAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEA 431 (478)
T ss_pred HHHhh-ccCcc------------------------------hhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHH
Confidence 66531 11111 123467777777778899999999999999999999999
Q ss_pred HHHHHHHHHhcCCcchHHHHHHHHHhCC
Q 036237 522 YVVLSNIYAAAGQWDKVSEVREMMKKRG 549 (689)
Q Consensus 522 ~~~L~~~~~~~g~~~~A~~~~~~m~~~~ 549 (689)
++.|+..-.+.|+.++|..++...++..
T Consensus 432 lnNLavL~~r~G~i~~Arsll~~A~s~~ 459 (478)
T KOG1129|consen 432 LNNLAVLAARSGDILGARSLLNAAKSVM 459 (478)
T ss_pred HHhHHHHHhhcCchHHHHHHHHHhhhhC
Confidence 9999999999999999999999877643
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.06 E-value=3.5e-06 Score=87.03 Aligned_cols=452 Identities=14% Similarity=0.136 Sum_probs=271.3
Q ss_pred CCHHHHHHHHhcccCCCChhhHHHHHHHHHhCCCchHHHHHHHHhHhC-CCCCCcccHHHHHHHHHhcCChHHHHHHHHH
Q 036237 69 NNLHYARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDR-FLLPDNFTLPCVIKGAARLGAIKEGKQIHGL 147 (689)
Q Consensus 69 g~~~~A~~~f~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~-g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~ 147 (689)
..++.+.....+|| ..|-.-+..+.+.|+.......|.+.+.. -+.-....|...++.....+-++.+..++++
T Consensus 89 ~c~er~lv~mHkmp-----RIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrR 163 (835)
T KOG2047|consen 89 NCFERCLVFMHKMP-----RIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRR 163 (835)
T ss_pred HHHHHHHHHHhcCC-----HHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHH
Confidence 34455666666676 57888888888888888888888887653 2333456788888888888888888888888
Q ss_pred HHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhhCCCC----------CeehHHHHHHHHHhCCChH---HHHHHHhhC
Q 036237 148 VFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDK----------DLVSWNCLIDGYVKKGEVE---VAMKLFDEM 214 (689)
Q Consensus 148 ~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----------~~~~~~~li~~~~~~g~~~---~A~~~~~~m 214 (689)
-++.. +..-+--|..+++.+++++|.+.+...... +-..|+.+-...+++-+.- ....+++.+
T Consensus 164 YLk~~----P~~~eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~g 239 (835)
T KOG2047|consen 164 YLKVA----PEAREEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGG 239 (835)
T ss_pred HHhcC----HHHHHHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhh
Confidence 87653 334667778888888888888888877643 2334666655555553322 223344444
Q ss_pred CC--CCc--chHHHHHHHHHhCCChHHHHHHHhhcCc--CCcchHHHHHHHHHhcCCHHHHHHHH-H---hcCCCChHHH
Q 036237 215 PD--RDL--FSWTCLVDGFSKCGKVEIAREIFYRMPN--RNLVSWNAMINGYMKAGDVDSACELF-D---DMEIRDLITW 284 (689)
Q Consensus 215 ~~--~d~--~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~-~---~~~~~~~~~~ 284 (689)
.. +|. ..|++|.+-|.+.|.+++|..+|++... ..+.-++.+-+.|+.-..-.-+.++= . .-.+.+...+
T Consensus 240 i~rftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl 319 (835)
T KOG2047|consen 240 IRRFTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQTVMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDL 319 (835)
T ss_pred cccCcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhheehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhH
Confidence 43 232 3566666666666666666666666554 22334444445554332211111111 0 0001122222
Q ss_pred HHHHHHHHHcCChHHHHHHHHHhccCC-----------CCcChhhHHHHHHHHHcccchhhHHHHHHHHHHhC-----Cc
Q 036237 285 NSMIAGYELNGRFMEALELLETMLIGD-----------VLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNG-----FV 348 (689)
Q Consensus 285 ~~li~~~~~~g~~~~A~~~~~~m~~~g-----------~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g-----~~ 348 (689)
.. .+.-|+.+...+ -+-+..++..-.. ...|+..+-...+.++++.= +.
T Consensus 320 ~~-------------~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~vdP~ka~G 384 (835)
T KOG2047|consen 320 EL-------------HMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVK--LYEGNAAEQINTYTEAVKTVDPKKAVG 384 (835)
T ss_pred HH-------------HHHHHHHHHhccchHHHHHHHhcCCccHHHHHhhhh--hhcCChHHHHHHHHHHHHccCcccCCC
Confidence 22 222333332211 0112222322222 23455566666777776531 11
Q ss_pred cchhHHhHHHhhHHhcCCHHHHHHHHHhcCCCC---h----hhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-----
Q 036237 349 VDGVLGTLLIQMYSKCGSIESALTVFRAISKKK---V----GHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPT----- 416 (689)
Q Consensus 349 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~---~----~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~----- 416 (689)
.-...|..+.+.|-..|+++.|+.+|++..+-+ + ..|-.-...=.++.+++.|+++.+......-.|.
T Consensus 385 s~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd 464 (835)
T KOG2047|consen 385 SPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYD 464 (835)
T ss_pred ChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhc
Confidence 124567788999999999999999999988632 2 3566666667788999999999888764322211
Q ss_pred ------H------HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-C-CC
Q 036237 417 ------A------ITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESM-P-MR 482 (689)
Q Consensus 417 ------~------~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~-~~ 482 (689)
. ..|...+..-...|-++....+|+.++.-.-..|.+ .-...-.+.....++++.+++++- + ++
T Consensus 465 ~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqi--i~NyAmfLEeh~yfeesFk~YErgI~LFk 542 (835)
T KOG2047|consen 465 NSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQI--IINYAMFLEEHKYFEESFKAYERGISLFK 542 (835)
T ss_pred CCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHH--HHHHHHHHHhhHHHHHHHHHHHcCCccCC
Confidence 1 123334444445677888888888887321223332 222333455677799999999985 2 33
Q ss_pred -CCHH-HHHHHHHHHHhc---CChHHHHHHHHHHhhcCCCCc--hhHHHHHHHHHhcCCcchHHHHHHHHH
Q 036237 483 -PNFV-IWMSLLSGARNH---GNKDIGEYAANNLIKVAPDTI--GCYVVLSNIYAAAGQWDKVSEVREMMK 546 (689)
Q Consensus 483 -p~~~-~~~~ll~~~~~~---g~~~~a~~~~~~~~~~~p~~~--~~~~~L~~~~~~~g~~~~A~~~~~~m~ 546 (689)
|++. .|++.+.-+.+. ..++.|..+|+++++.-|+.. ..|...+..=.+-|.-..|..++++..
T Consensus 543 ~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat 613 (835)
T KOG2047|consen 543 WPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALDGCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERAT 613 (835)
T ss_pred CccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 5554 888887766443 378999999999999777432 223333444445688888888888754
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.06 E-value=1.5e-08 Score=91.55 Aligned_cols=162 Identities=17% Similarity=0.151 Sum_probs=142.6
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHH
Q 036237 384 HWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAI-TFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPT-IEHYGCLVD 461 (689)
Q Consensus 384 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~ 461 (689)
+...|.-+|.+.|+...|..-+++.++ ..|+.. ++..+...|.+.|..+.|.+.|+... .+.|+ -.+.|....
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~--~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAl---sl~p~~GdVLNNYG~ 111 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALE--HDPSYYLAHLVRAHYYQKLGENDLADESYRKAL---SLAPNNGDVLNNYGA 111 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHcCChhhHHHHHHHHH---hcCCCccchhhhhhH
Confidence 355677889999999999999999998 467654 88888899999999999999999998 46676 688899999
Q ss_pred HHHhcCCHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCcch
Q 036237 462 ILCRTGYLEEAKSTIESMPMRPN----FVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDK 537 (689)
Q Consensus 462 ~~~~~g~~~~A~~~~~~~~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~~~~~g~~~~ 537 (689)
-+|..|++++|...|++.-..|+ ..+|..+..+..+.|+.+.|...+++.++.+|+.+.+...+.....+.|++-+
T Consensus 112 FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~ 191 (250)
T COG3063 112 FLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAP 191 (250)
T ss_pred HHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchH
Confidence 99999999999999999743342 45889999888999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCC
Q 036237 538 VSEVREMMKKRGF 550 (689)
Q Consensus 538 A~~~~~~m~~~~~ 550 (689)
|..+++.....+.
T Consensus 192 Ar~~~~~~~~~~~ 204 (250)
T COG3063 192 ARLYLERYQQRGG 204 (250)
T ss_pred HHHHHHHHHhccc
Confidence 9999998887654
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.06 E-value=2.3e-06 Score=82.00 Aligned_cols=187 Identities=13% Similarity=0.113 Sum_probs=95.4
Q ss_pred HHhhHHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHHcCC-------HHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHh
Q 036237 357 LIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGM-------ATQALDLFNKMCRMGMKPTAI-TFIGVLNACS 428 (689)
Q Consensus 357 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~-------~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~ 428 (689)
|+--|.+.+++.+|..+...+....+.-|-.-.-.++..|+ ..-|.+.|+-.-..+..-|.+ ---++.+++.
T Consensus 291 L~iYyL~q~dVqeA~~L~Kdl~PttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fF 370 (557)
T KOG3785|consen 291 LIIYYLNQNDVQEAISLCKDLDPTTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFF 370 (557)
T ss_pred heeeecccccHHHHHHHHhhcCCCChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHH
Confidence 45556777777777777766655444333222222333332 223444443333333333322 2223344444
Q ss_pred ccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCC--CCHHHHHHHHHH-HHhcCChHHHH
Q 036237 429 HAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMR--PNFVIWMSLLSG-ARNHGNKDIGE 505 (689)
Q Consensus 429 ~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--p~~~~~~~ll~~-~~~~g~~~~a~ 505 (689)
-...+|+.+.+++.+.. +=...|...+ .+..+++..|++.+|+++|-.+... .|..+|.+++.- |.+.+.++.|-
T Consensus 371 L~~qFddVl~YlnSi~s-YF~NdD~Fn~-N~AQAk~atgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW 448 (557)
T KOG3785|consen 371 LSFQFDDVLTYLNSIES-YFTNDDDFNL-NLAQAKLATGNYVEAEELFIRISGPEIKNKILYKSMLARCYIRNKKPQLAW 448 (557)
T ss_pred HHHHHHHHHHHHHHHHH-HhcCcchhhh-HHHHHHHHhcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHHH
Confidence 45566777777776662 3333333333 3667777777777777777665311 245556555444 34556666554
Q ss_pred HHHHHHhhcC-CCC-chhHHHHHHHHHhcCCcchHHHHHHHHHhC
Q 036237 506 YAANNLIKVA-PDT-IGCYVVLSNIYAAAGQWDKVSEVREMMKKR 548 (689)
Q Consensus 506 ~~~~~~~~~~-p~~-~~~~~~L~~~~~~~g~~~~A~~~~~~m~~~ 548 (689)
.++ ++.+ |.+ ......+++-|.+.+.+--|.+.|+.+...
T Consensus 449 ~~~---lk~~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~l 490 (557)
T KOG3785|consen 449 DMM---LKTNTPSERFSLLQLIANDCYKANEFYYAAKAFDELEIL 490 (557)
T ss_pred HHH---HhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHcc
Confidence 433 3322 211 223345566666777776666667666553
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.04 E-value=3.1e-08 Score=108.63 Aligned_cols=210 Identities=10% Similarity=-0.025 Sum_probs=163.3
Q ss_pred cchhhHHHHHHHHHHhCCccchhHHhHHHhhHH---------hcCCHHHHHHHHHhcCC---CChhhHHHHHHHHHHcCC
Q 036237 330 AVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYS---------KCGSIESALTVFRAISK---KKVGHWTAMIVGLGMHGM 397 (689)
Q Consensus 330 ~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~---------~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~ 397 (689)
+++++|...++.+++... .+...+..+..+|. ..+++++|...+++..+ .+...|..+...+...|+
T Consensus 275 ~~~~~A~~~~~~Al~ldP-~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~ 353 (553)
T PRK12370 275 YSLQQALKLLTQCVNMSP-NSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSE 353 (553)
T ss_pred HHHHHHHHHHHHHHhcCC-ccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccC
Confidence 456788899998887652 23455555555443 23458999999998876 356788889999999999
Q ss_pred HHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCCh-hHHHHHHHHHHhcCCHHHHHHH
Q 036237 398 ATQALDLFNKMCRMGMKPT-AITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTI-EHYGCLVDILCRTGYLEEAKST 475 (689)
Q Consensus 398 ~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~~ 475 (689)
+++|+..|++..+ ..|+ ...+..+..++...|++++|...++.+.+ +.|+. ..+..+...+...|++++|...
T Consensus 354 ~~~A~~~~~~Al~--l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~---l~P~~~~~~~~~~~~~~~~g~~eeA~~~ 428 (553)
T PRK12370 354 YIVGSLLFKQANL--LSPISADIKYYYGWNLFMAGQLEEALQTINECLK---LDPTRAAAGITKLWITYYHTGIDDAIRL 428 (553)
T ss_pred HHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCCCChhhHHHHHHHHHhccCHHHHHHH
Confidence 9999999999998 4566 44677788899999999999999999983 55653 2334455567778999999999
Q ss_pred HHhCC--CCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCcchHHHHHHHHHh
Q 036237 476 IESMP--MRPN-FVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKK 547 (689)
Q Consensus 476 ~~~~~--~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~~~~~g~~~~A~~~~~~m~~ 547 (689)
+++.- ..|+ +..+..+..++...|+.++|...++++....|.+......|+..|...| ++|...++.+.+
T Consensus 429 ~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~ 501 (553)
T PRK12370 429 GDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNS--ERALPTIREFLE 501 (553)
T ss_pred HHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccH--HHHHHHHHHHHH
Confidence 98862 2354 4457778888889999999999999998888888878888888888888 488887777654
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.04 E-value=2.5e-06 Score=92.05 Aligned_cols=459 Identities=15% Similarity=0.137 Sum_probs=267.6
Q ss_pred HHHHhhcccccCCCCHHHHHHHHhcccC-CCChhh-----HHHHHHHHHhCCCchHHHHHHHHhHhCCCCCCcccHHHHH
Q 036237 56 SSRLLSLYVDPHINNLHYARSIFDRILQ-HPSLVL-----YNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVI 129 (689)
Q Consensus 56 ~~~ll~~~~~~~~g~~~~A~~~f~~~~~-~~~~~~-----~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll 129 (689)
+...-+.+-+ .|-+..|++.+..+.. .+.++. -..++ .|.-.-.++.+++.++.|+..+++.|..+...+.
T Consensus 609 ra~IAqLCEK--AGL~qraLehytDl~DIKR~vVhth~L~pEwLv-~yFg~lsve~s~eclkaml~~NirqNlQi~VQva 685 (1666)
T KOG0985|consen 609 RAEIAQLCEK--AGLLQRALEHYTDLYDIKRVVVHTHLLNPEWLV-NYFGSLSVEDSLECLKAMLSANIRQNLQIVVQVA 685 (1666)
T ss_pred HHHHHHHHHh--cchHHHHHHhcccHHHHHHHHHHhccCCHHHHH-HHHHhcCHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 4555566777 8888999988887763 222221 11222 3444456889999999999988888877766666
Q ss_pred HHHHhcCChHHHHHHHHHHHHh-----------CCCCchhHHHHHHHHHHhcCChHHHHHHHhhCCC-------------
Q 036237 130 KGAARLGAIKEGKQIHGLVFKL-----------GFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDD------------- 185 (689)
Q Consensus 130 ~~~~~~~~~~~a~~~~~~~~~~-----------g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~------------- 185 (689)
.-|...-..+...++|+..... ++.-|+.+.-..|.+.++.|++.+.+++.++-.-
T Consensus 686 tky~eqlg~~~li~lFE~fks~eGL~yfLgSivn~seDpevh~KYIqAA~kt~QikEvERicresn~YdpErvKNfLkeA 765 (1666)
T KOG0985|consen 686 TKYHEQLGAQALIELFESFKSYEGLYYFLGSIVNFSEDPEVHFKYIQAACKTGQIKEVERICRESNCYDPERVKNFLKEA 765 (1666)
T ss_pred HHHHHHhCHHHHHHHHHhhccchhHHHHHHHHhccccCchHHHHHHHHHHhhccHHHHHHHHhccccCCHHHHHHHHHhc
Confidence 6666554455555555544322 3456677777889999999999999988776430
Q ss_pred ------C------------CeehH------HHHHHHHHhCCC----------------hHHHH-----------------
Q 036237 186 ------K------------DLVSW------NCLIDGYVKKGE----------------VEVAM----------------- 208 (689)
Q Consensus 186 ------~------------~~~~~------~~li~~~~~~g~----------------~~~A~----------------- 208 (689)
| |.+.| --.|..|++.-+ .++.+
T Consensus 766 kL~DqlPLiiVCDRf~fVhdlvlYLyrnn~~kyIE~yVQkvNps~~p~VvG~LLD~dC~E~~ik~Li~~v~gq~~~deLv 845 (1666)
T KOG0985|consen 766 KLTDQLPLIIVCDRFDFVHDLVLYLYRNNLQKYIEIYVQKVNPSRTPQVVGALLDVDCSEDFIKNLILSVRGQFPVDELV 845 (1666)
T ss_pred cccccCceEEEecccccHHHHHHHHHHhhHHHHHHHHHhhcCCcccchhhhhhhcCCCcHHHHHHHHHHHhccCChHHHH
Confidence 0 11111 112344444311 11110
Q ss_pred -------------HHHhhCCC---CCcchHHHHHHHHHhCCChHH-HH---------HHHhhcCcCC-------------
Q 036237 209 -------------KLFDEMPD---RDLFSWTCLVDGFSKCGKVEI-AR---------EIFYRMPNRN------------- 249 (689)
Q Consensus 209 -------------~~~~~m~~---~d~~~~~~li~~~~~~g~~~~-A~---------~~~~~~~~~~------------- 249 (689)
..++.... .|..++|+|...|..+++-.+ -+ .+=.-..++|
T Consensus 846 ~EvEkRNRLklLlp~LE~~i~eG~~d~a~hnAlaKIyIDSNNnPE~fLkeN~yYDs~vVGkYCEKRDP~lA~vaYerGqc 925 (1666)
T KOG0985|consen 846 EEVEKRNRLKLLLPWLESLIQEGSQDPATHNALAKIYIDSNNNPERFLKENPYYDSKVVGKYCEKRDPHLACVAYERGQC 925 (1666)
T ss_pred HHHHhhhhHHHHHHHHHHHHhccCcchHHHhhhhheeecCCCChHHhcccCCcchhhHHhhhhcccCCceEEEeecccCC
Confidence 01111110 255566666666554432211 00 0000000111
Q ss_pred ----------cchHHHHHHHHHhcCCHHHHHHHHHhcC-----------------CCChHHHHHHHHHHHHcCChHHHHH
Q 036237 250 ----------LVSWNAMINGYMKAGDVDSACELFDDME-----------------IRDLITWNSMIAGYELNGRFMEALE 302 (689)
Q Consensus 250 ----------~~~~~~li~~~~~~g~~~~A~~~~~~~~-----------------~~~~~~~~~li~~~~~~g~~~~A~~ 302 (689)
-..|..+.+.+.+..+.+--.+++.+-. ..|+..-+.-+.++...+-+.+-++
T Consensus 926 D~elI~vcNeNSlfK~~aRYlv~R~D~~LW~~VL~e~n~~rRqLiDqVv~tal~E~~dPe~vS~tVkAfMtadLp~eLIE 1005 (1666)
T KOG0985|consen 926 DLELINVCNENSLFKSQARYLVERSDPDLWAKVLNEENPYRRQLIDQVVQTALPETQDPEEVSVTVKAFMTADLPNELIE 1005 (1666)
T ss_pred cHHHHHhcCchhHHHHHHHHHHhccChHHHHHHHhccChHHHHHHHHHHHhcCCccCChHHHHHHHHHHHhcCCcHHHHH
Confidence 2223333444444444444334432211 1245555566777888888888888
Q ss_pred HHHHhccCCCCcChhh----HHHHHHHHHcccchhhHHHHHHHHHHhC-----------------------CccchhHHh
Q 036237 303 LLETMLIGDVLPNDAT----LVSALSAVAGLAVLNKGRWMHSYIVKNG-----------------------FVVDGVLGT 355 (689)
Q Consensus 303 ~~~~m~~~g~~p~~~t----~~~ll~a~~~~~~~~~a~~i~~~~~~~g-----------------------~~~~~~~~~ 355 (689)
++++..-. |+.++ ...++-.-+-..+.....++...+-... +..+....+
T Consensus 1006 LLEKIvL~---~S~Fse~~nLQnLLiLtAikad~trVm~YI~rLdnyDa~~ia~iai~~~LyEEAF~ifkkf~~n~~A~~ 1082 (1666)
T KOG0985|consen 1006 LLEKIVLD---NSVFSENRNLQNLLILTAIKADRTRVMEYINRLDNYDAPDIAEIAIENQLYEEAFAIFKKFDMNVSAIQ 1082 (1666)
T ss_pred HHHHHhcC---CcccccchhhhhhHHHHHhhcChHHHHHHHHHhccCCchhHHHHHhhhhHHHHHHHHHHHhcccHHHHH
Confidence 88877532 22221 1111111111112222222222221111 111222222
Q ss_pred HHHhhHHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHH
Q 036237 356 LLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVND 435 (689)
Q Consensus 356 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~ 435 (689)
.|++ .-++++.|.+.-++.. .+..|..+..+-.+.|...+|++-|-+. -|+..|..++.++++.|.+++
T Consensus 1083 VLie---~i~~ldRA~efAe~~n--~p~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~ed 1151 (1666)
T KOG0985|consen 1083 VLIE---NIGSLDRAYEFAERCN--EPAVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYED 1151 (1666)
T ss_pred HHHH---HhhhHHHHHHHHHhhC--ChHHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHH
Confidence 2221 1233444444433333 3457999999999999999999877543 366789999999999999999
Q ss_pred HHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcC
Q 036237 436 GRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVA 515 (689)
Q Consensus 436 a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 515 (689)
-.+++...+++ .-+|.+. +.||-+|++.+++.|-++++. -||..-...+.+-|...|.++.|.-+|.
T Consensus 1152 Lv~yL~MaRkk-~~E~~id--~eLi~AyAkt~rl~elE~fi~----gpN~A~i~~vGdrcf~~~~y~aAkl~y~------ 1218 (1666)
T KOG0985|consen 1152 LVKYLLMARKK-VREPYID--SELIFAYAKTNRLTELEEFIA----GPNVANIQQVGDRCFEEKMYEAAKLLYS------ 1218 (1666)
T ss_pred HHHHHHHHHHh-hcCccch--HHHHHHHHHhchHHHHHHHhc----CCCchhHHHHhHHHhhhhhhHHHHHHHH------
Confidence 99999888754 5566655 569999999999999888875 3788888889999999999999988887
Q ss_pred CCCchhHHHHHHHHHhcCCcchHHHHHHHHH
Q 036237 516 PDTIGCYVVLSNIYAAAGQWDKVSEVREMMK 546 (689)
Q Consensus 516 p~~~~~~~~L~~~~~~~g~~~~A~~~~~~m~ 546 (689)
+...|..|+..+...|.+..|...-++..
T Consensus 1219 --~vSN~a~La~TLV~LgeyQ~AVD~aRKAn 1247 (1666)
T KOG0985|consen 1219 --NVSNFAKLASTLVYLGEYQGAVDAARKAN 1247 (1666)
T ss_pred --HhhhHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 44567778888888888887776554443
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.02 E-value=7.4e-07 Score=89.05 Aligned_cols=216 Identities=12% Similarity=0.035 Sum_probs=135.9
Q ss_pred HcCChHHHHHHHHHhccCCCCcChhhHHHHHHHHHcccchhhHHHHHHHHHHhCCccchhHHhHHHhhHHhcCCHHHHHH
Q 036237 293 LNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALT 372 (689)
Q Consensus 293 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~ 372 (689)
-.|+.-.|..-|+........++.. |.-+..+|....+.++..+.|..+.+.+ +.++.+|..-.+++.-.+++++|..
T Consensus 338 L~g~~~~a~~d~~~~I~l~~~~~~l-yI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~A~a 415 (606)
T KOG0547|consen 338 LKGDSLGAQEDFDAAIKLDPAFNSL-YIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEEAIA 415 (606)
T ss_pred hcCCchhhhhhHHHHHhcCcccchH-HHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHHHHH
Confidence 3455556666666655543222221 4455555666666666666666666654 3345566666677777777888888
Q ss_pred HHHhcCCC---ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCC
Q 036237 373 VFRAISKK---KVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGI 449 (689)
Q Consensus 373 ~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~ 449 (689)
=|++...- ++..|-.+..+..+.++++++...|++.++. ++--...|+.....+...+++++|.+.|+..+ .+
T Consensus 416 DF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai---~L 491 (606)
T KOG0547|consen 416 DFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAI---EL 491 (606)
T ss_pred HHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHH---hh
Confidence 88777653 3445656666666677788888888887763 33334567777777778888888888887776 23
Q ss_pred CCC---------hhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHhhcC
Q 036237 450 EPT---------IEHYGCLVDILCRTGYLEEAKSTIESM-PMRPN-FVIWMSLLSGARNHGNKDIGEYAANNLIKVA 515 (689)
Q Consensus 450 ~p~---------~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 515 (689)
.|+ +.+..+++-.- -.+++..|..++.+. .+.|. ...+.+|...-.+.|+.++|+.+|++...+.
T Consensus 492 E~~~~~~~v~~~plV~Ka~l~~q-wk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~lA 567 (606)
T KOG0547|consen 492 EPREHLIIVNAAPLVHKALLVLQ-WKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQLA 567 (606)
T ss_pred ccccccccccchhhhhhhHhhhc-hhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 343 11122222222 237788888888776 45553 4467778888888888888888888877654
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=99.01 E-value=3.9e-06 Score=87.58 Aligned_cols=239 Identities=15% Similarity=0.113 Sum_probs=150.7
Q ss_pred HHHHHHcCChHHHHHHHHHhccCCCCcChhhHHHHHHHHHcccchhhHHHHHHHHHHhCCccchhHHhHHHhhHHhcCCH
Q 036237 288 IAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSI 367 (689)
Q Consensus 288 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~ 367 (689)
|.+-.....|.+|+.+++.++... .-..-|..+...|+..|+++.|+++|... ..++-.|+||.+.|++
T Consensus 739 ieaai~akew~kai~ildniqdqk--~~s~yy~~iadhyan~~dfe~ae~lf~e~---------~~~~dai~my~k~~kw 807 (1636)
T KOG3616|consen 739 IEAAIGAKEWKKAISILDNIQDQK--TASGYYGEIADHYANKGDFEIAEELFTEA---------DLFKDAIDMYGKAGKW 807 (1636)
T ss_pred HHHHhhhhhhhhhHhHHHHhhhhc--cccccchHHHHHhccchhHHHHHHHHHhc---------chhHHHHHHHhccccH
Confidence 344566788899999998887643 23345677788889999999998888543 2345578899999999
Q ss_pred HHHHHHHHhcCCCC--hhhHHHHHHHHHHcCCHHHHHHHH-------------HH------HHHC--CCCCC--HHHHHH
Q 036237 368 ESALTVFRAISKKK--VGHWTAMIVGLGMHGMATQALDLF-------------NK------MCRM--GMKPT--AITFIG 422 (689)
Q Consensus 368 ~~A~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~l~-------------~~------m~~~--g~~p~--~~t~~~ 422 (689)
++|.++-.+...|. +..|-+-..-+-.+|++.+|.++| ++ |.+. ...|+ ..|...
T Consensus 808 ~da~kla~e~~~~e~t~~~yiakaedldehgkf~eaeqlyiti~~p~~aiqmydk~~~~ddmirlv~k~h~d~l~dt~~~ 887 (1636)
T KOG3616|consen 808 EDAFKLAEECHGPEATISLYIAKAEDLDEHGKFAEAEQLYITIGEPDKAIQMYDKHGLDDDMIRLVEKHHGDHLHDTHKH 887 (1636)
T ss_pred HHHHHHHHHhcCchhHHHHHHHhHHhHHhhcchhhhhheeEEccCchHHHHHHHhhCcchHHHHHHHHhChhhhhHHHHH
Confidence 99998888776653 344555555555566555555443 21 1110 01233 234555
Q ss_pred HHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCC----CCHHHHHH------HH
Q 036237 423 VLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMR----PNFVIWMS------LL 492 (689)
Q Consensus 423 ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----p~~~~~~~------ll 492 (689)
+..-+...|++..|..-|-+.. -|.+-+.+|-..+.|++|.++-+.-+-. .-...|.- -+
T Consensus 888 f~~e~e~~g~lkaae~~flea~----------d~kaavnmyk~s~lw~dayriaktegg~n~~k~v~flwaksiggdaav 957 (1636)
T KOG3616|consen 888 FAKELEAEGDLKAAEEHFLEAG----------DFKAAVNMYKASELWEDAYRIAKTEGGANAEKHVAFLWAKSIGGDAAV 957 (1636)
T ss_pred HHHHHHhccChhHHHHHHHhhh----------hHHHHHHHhhhhhhHHHHHHHHhccccccHHHHHHHHHHHhhCcHHHH
Confidence 5666667777777777665544 3667788899999999999888764311 11223322 22
Q ss_pred HHHHhcCChHHHHHHH------HHHhh-----cCCCCchhHHHHHHHHHhcCCcchHHHHHHHHHh
Q 036237 493 SGARNHGNKDIGEYAA------NNLIK-----VAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKK 547 (689)
Q Consensus 493 ~~~~~~g~~~~a~~~~------~~~~~-----~~p~~~~~~~~L~~~~~~~g~~~~A~~~~~~m~~ 547 (689)
..+.++|-++.|+... +-+++ .....+.....++.-+...|++++|.+.+-+..+
T Consensus 958 kllnk~gll~~~id~a~d~~afd~afdlari~~k~k~~~vhlk~a~~ledegk~edaskhyveaik 1023 (1636)
T KOG3616|consen 958 KLLNKHGLLEAAIDFAADNCAFDFAFDLARIAAKDKMGEVHLKLAMFLEDEGKFEDASKHYVEAIK 1023 (1636)
T ss_pred HHHHhhhhHHHHhhhhhcccchhhHHHHHHHhhhccCccchhHHhhhhhhccchhhhhHhhHHHhh
Confidence 2345566666555432 22222 1223456788888889999999999777665544
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=98.97 E-value=3e-07 Score=92.25 Aligned_cols=225 Identities=10% Similarity=-0.041 Sum_probs=143.9
Q ss_pred ChHHHHHHHHHhccCC-CCcC--hhhHHHHHHHHHcccchhhHHHHHHHHHHhCCccchhHHhHHHhhHHhcCCHHHHHH
Q 036237 296 RFMEALELLETMLIGD-VLPN--DATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALT 372 (689)
Q Consensus 296 ~~~~A~~~~~~m~~~g-~~p~--~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~ 372 (689)
..+.++.-+.+++... ..|+ ...|......+...|+.++|...+..+++.. +.+...++.+...|...|++++|.+
T Consensus 41 ~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~~ 119 (296)
T PRK11189 41 QQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAYE 119 (296)
T ss_pred HHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 4445555555555321 1111 1234444445556666666666666666554 3356778888888999999999999
Q ss_pred HHHhcCC---CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCC
Q 036237 373 VFRAISK---KKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGI 449 (689)
Q Consensus 373 ~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~ 449 (689)
.|++..+ .+...|..+...+...|++++|++.|++..+ ..|+..........+...++.++|...|+.... ..
T Consensus 120 ~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~--~~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~--~~ 195 (296)
T PRK11189 120 AFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQ--DDPNDPYRALWLYLAESKLDPKQAKENLKQRYE--KL 195 (296)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHccCCHHHHHHHHHHHHh--hC
Confidence 9988765 3456788888899999999999999999887 456544222222234456789999999977653 33
Q ss_pred CCChhHHHHHHHHHHhcCCHH--HHHHHHHhC-CC----CC-CHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCC-Cch
Q 036237 450 EPTIEHYGCLVDILCRTGYLE--EAKSTIESM-PM----RP-NFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPD-TIG 520 (689)
Q Consensus 450 ~p~~~~~~~li~~~~~~g~~~--~A~~~~~~~-~~----~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~-~~~ 520 (689)
.|+... ..++..+ .|++. ++.+.+.+. .. .| ....|..+...+.+.|++++|+..|+++++.+|. .+.
T Consensus 196 ~~~~~~-~~~~~~~--lg~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~~~e 272 (296)
T PRK11189 196 DKEQWG-WNIVEFY--LGKISEETLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVYNFVE 272 (296)
T ss_pred CccccH-HHHHHHH--ccCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCchHHH
Confidence 444322 2333333 44443 333333321 11 12 2457999999999999999999999999999974 444
Q ss_pred hHHHHHHH
Q 036237 521 CYVVLSNI 528 (689)
Q Consensus 521 ~~~~L~~~ 528 (689)
.-..++..
T Consensus 273 ~~~~~~e~ 280 (296)
T PRK11189 273 HRYALLEL 280 (296)
T ss_pred HHHHHHHH
Confidence 44444443
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.95 E-value=1.1e-07 Score=99.67 Aligned_cols=232 Identities=16% Similarity=0.147 Sum_probs=157.1
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHhcCCC----------ChH-HHHHHHHHHHHcCChHHHHHHHHHhccC---CCCcCh
Q 036237 251 VSWNAMINGYMKAGDVDSACELFDDMEIR----------DLI-TWNSMIAGYELNGRFMEALELLETMLIG---DVLPND 316 (689)
Q Consensus 251 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~----------~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~---g~~p~~ 316 (689)
.+...|..+|...|++++|+.+|+..... .+. ..+.+...|...+++.+|..+|++++.- ..-++.
T Consensus 200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h 279 (508)
T KOG1840|consen 200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDH 279 (508)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCC
Confidence 44555888888888888888888765422 111 2334556677777777777777776531 001111
Q ss_pred hhHHHHHHHHHcccchhhHHHHHHHHHHhCCccchhHHhHHHhhHHhcCCHHHHHHHHHhcCC----------CChh-hH
Q 036237 317 ATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISK----------KKVG-HW 385 (689)
Q Consensus 317 ~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----------~~~~-~~ 385 (689)
+.-..+++.|...|.+.|++++|...+++..+ +.+. ..
T Consensus 280 -------------------------------~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l 328 (508)
T KOG1840|consen 280 -------------------------------PAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQL 328 (508)
T ss_pred -------------------------------HHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHH
Confidence 11133444455566666666666655554432 1222 35
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHC---CCCCCH----HHHHHHHHHHhccCcHHHHHHHHHHhHHhc-----CCCCC-
Q 036237 386 TAMIVGLGMHGMATQALDLFNKMCRM---GMKPTA----ITFIGVLNACSHAGLVNDGRRYFNMMINDY-----GIEPT- 452 (689)
Q Consensus 386 ~~li~~~~~~g~~~~A~~l~~~m~~~---g~~p~~----~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~-----~~~p~- 452 (689)
+.++..+...+++++|..++++..+. -..++. .+++.|...+.+.|++++|.++|++++... +..+.
T Consensus 329 ~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~ 408 (508)
T KOG1840|consen 329 SELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGV 408 (508)
T ss_pred HHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhh
Confidence 66777788888899998888875542 123333 378899999999999999999999887543 12233
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhC--------CCCCCHH-HHHHHHHHHHhcCChHHHHHHHHHHhh
Q 036237 453 IEHYGCLVDILCRTGYLEEAKSTIESM--------PMRPNFV-IWMSLLSGARNHGNKDIGEYAANNLIK 513 (689)
Q Consensus 453 ~~~~~~li~~~~~~g~~~~A~~~~~~~--------~~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~ 513 (689)
-..++.|...|.+.++.++|.++|.+. +..|+.. +|..|...|...|+++.|+.+.+.++.
T Consensus 409 ~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 409 GKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred hHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 456788889999999999999988875 2345554 899999999999999999999988874
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.92 E-value=9.6e-07 Score=93.18 Aligned_cols=437 Identities=12% Similarity=0.077 Sum_probs=234.8
Q ss_pred CCCCCchHHHHHhhcccccCCCCHHHHHHHHhcccC--CCChhhHHHHHHHHHhCCCchHHHHHHHHhHhCCCCCCccc-
Q 036237 48 NLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQ--HPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFT- 124 (689)
Q Consensus 48 g~~~~~~~~~~ll~~~~~~~~g~~~~A~~~f~~~~~--~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t- 124 (689)
.+.-|+.+|..|.-+... +|+++.+-+.|++... -.....|+.+-..|+..|.-..|+.+.+.-......|+..+
T Consensus 318 ~~qnd~ai~d~Lt~al~~--~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~ 395 (799)
T KOG4162|consen 318 KFQNDAAIFDHLTFALSR--CGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISV 395 (799)
T ss_pred hhcchHHHHHHHHHHHHH--HHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchH
Confidence 345688999999888888 9999999999998752 23344699999999999999999999887765543454443
Q ss_pred HHHHHHHHH-hcCChHHHHHHHHHHHHh--CC--CCchhHHHHHHHHHHhcCChHHHHHHHhhCCCCCeehHHHHHHHHH
Q 036237 125 LPCVIKGAA-RLGAIKEGKQIHGLVFKL--GF--GFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYV 199 (689)
Q Consensus 125 ~~~ll~~~~-~~~~~~~a~~~~~~~~~~--g~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~ 199 (689)
+-..-+.|. +.+..+++..+-.++++. +. ......+..+.-+|...-. ...+|.-
T Consensus 396 ~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~--------------~a~~~se------ 455 (799)
T KOG4162|consen 396 LLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQAR--------------QANLKSE------ 455 (799)
T ss_pred HHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhh--------------cCCChHH------
Confidence 333334444 456777777777777662 11 1122333333333432100 0000000
Q ss_pred hCCChHHHHHHHhhCCCC---CcchHHHHHHHHHhCCChHHHHHHHhhcCc----CCcchHHHHHHHHHhcCCHHHHHHH
Q 036237 200 KKGEVEVAMKLFDEMPDR---DLFSWTCLVDGFSKCGKVEIAREIFYRMPN----RNLVSWNAMINGYMKAGDVDSACEL 272 (689)
Q Consensus 200 ~~g~~~~A~~~~~~m~~~---d~~~~~~li~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~ 272 (689)
+.....++++.+++..+. |+...-.+.--|+..++++.|.+..++..+ .++..|..|.-.+...+++.+|+.+
T Consensus 456 R~~~h~kslqale~av~~d~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~v 535 (799)
T KOG4162|consen 456 RDALHKKSLQALEEAVQFDPTDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDV 535 (799)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHH
Confidence 001112333333333221 111111122223344445555444444333 2244444455555555555555555
Q ss_pred HHhcCCC---ChHHHHHHHHHHHHcCChHHHHHHHHHhccCCCCcChhhHHHHHHHHHcccchhhHHHHHHHHH--HhCC
Q 036237 273 FDDMEIR---DLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIV--KNGF 347 (689)
Q Consensus 273 ~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~--~~g~ 347 (689)
.+..... |-+....-+..-..-++.++|+.....++.- --+...+. ..++-....+....+. ....
T Consensus 536 vd~al~E~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~--we~~~~~q-------~~~~~g~~~~lk~~l~la~~q~ 606 (799)
T KOG4162|consen 536 VDAALEEFGDNHVLMDGKIHIELTFNDREEALDTCIHKLAL--WEAEYGVQ-------QTLDEGKLLRLKAGLHLALSQP 606 (799)
T ss_pred HHHHHHHhhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHH--HHhhhhHh-------hhhhhhhhhhhhcccccCcccc
Confidence 4443321 1111111112222244555555444444320 00000000 0000000000000000 0000
Q ss_pred ccchhHHhHHHhhHH---hcCCHHHHHHHHHhcCCCC------hhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-H
Q 036237 348 VVDGVLGTLLIQMYS---KCGSIESALTVFRAISKKK------VGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPT-A 417 (689)
Q Consensus 348 ~~~~~~~~~li~~~~---~~g~~~~A~~~~~~~~~~~------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~ 417 (689)
.....++..+..... +.-..+.....+...+.++ ...|......+.+.++.++|...+.+... +.|- .
T Consensus 607 ~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~--~~~l~~ 684 (799)
T KOG4162|consen 607 TDAISTSRYLSSLVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASK--IDPLSA 684 (799)
T ss_pred cccchhhHHHHHHHHhhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHh--cchhhH
Confidence 001111111111111 1111111112222222222 23577777888899999999888887765 3444 3
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCCHHHHHH--HHHhC-CCCC-CHHHHHHHH
Q 036237 418 ITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPT-IEHYGCLVDILCRTGYLEEAKS--TIESM-PMRP-NFVIWMSLL 492 (689)
Q Consensus 418 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~--~~~~~-~~~p-~~~~~~~ll 492 (689)
..|......+...|..++|.+.|.... .+.|+ +....++..++.+.|+..-|.. ++..+ .+.| +...|..|.
T Consensus 685 ~~~~~~G~~~~~~~~~~EA~~af~~Al---~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG 761 (799)
T KOG4162|consen 685 SVYYLRGLLLEVKGQLEEAKEAFLVAL---ALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLG 761 (799)
T ss_pred HHHHHhhHHHHHHHhhHHHHHHHHHHH---hcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHH
Confidence 355555566778899999999998887 57787 6788999999999998666666 77766 4555 678999999
Q ss_pred HHHHhcCChHHHHHHHHHHhhcCCCCch
Q 036237 493 SGARNHGNKDIGEYAANNLIKVAPDTIG 520 (689)
Q Consensus 493 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 520 (689)
..+.+.|+.+.|...|..++++++.+|.
T Consensus 762 ~v~k~~Gd~~~Aaecf~aa~qLe~S~PV 789 (799)
T KOG4162|consen 762 EVFKKLGDSKQAAECFQAALQLEESNPV 789 (799)
T ss_pred HHHHHccchHHHHHHHHHHHhhccCCCc
Confidence 9999999999999999999999887763
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.91 E-value=1.7e-06 Score=82.88 Aligned_cols=370 Identities=13% Similarity=0.078 Sum_probs=208.2
Q ss_pred HHHHHHhcCChHHHHHHHhhCCC---CCeehHHHHHHHHHhCCChHHHHHHHhhCCCCCcchHHHHHHHHHhCCChHHHH
Q 036237 163 LVSMYAKFGEIDLGRRVFDAMDD---KDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDRDLFSWTCLVDGFSKCGKVEIAR 239 (689)
Q Consensus 163 li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~d~~~~~~li~~~~~~g~~~~A~ 239 (689)
+...|.+.|++++|..++.-+.+ ++...|-.|.-.+.-.|.+.+|..+-....+ ++..-..|....-+.++-++-.
T Consensus 63 ia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~k-~pL~~RLlfhlahklndEk~~~ 141 (557)
T KOG3785|consen 63 IAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKSIAEKAPK-TPLCIRLLFHLAHKLNDEKRIL 141 (557)
T ss_pred HHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHHHHHhhCCC-ChHHHHHHHHHHHHhCcHHHHH
Confidence 33445555666666665554432 2344455555555555666666555544332 1112223333344555555555
Q ss_pred HHHhhcCcCCcchHHHHHHHHHhcCCHHHHHHHHHhcCCC--ChHHHHH-HHHHHHHcCChHHHHHHHHHhccCCCCcCh
Q 036237 240 EIFYRMPNRNLVSWNAMINGYMKAGDVDSACELFDDMEIR--DLITWNS-MIAGYELNGRFMEALELLETMLIGDVLPND 316 (689)
Q Consensus 240 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~-li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 316 (689)
.+.+.+... ..-.-+|..+.-..-.+.+|++++.++... +-...|. |.-+|.+..-++-+.+++.--++. -||+
T Consensus 142 ~fh~~LqD~-~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q--~pdS 218 (557)
T KOG3785|consen 142 TFHSSLQDT-LEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ--FPDS 218 (557)
T ss_pred HHHHHHhhh-HHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh--CCCc
Confidence 555444332 122334444444455677888888877643 3334443 334566777777777777666553 2333
Q ss_pred hhHHHHHHHH--HcccchhhHHHHHHHHHHhCCccchhHHhHHHhhHHhc-----CCHHHHHHHHHhcCCCChhhHHHHH
Q 036237 317 ATLVSALSAV--AGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKC-----GSIESALTVFRAISKKKVGHWTAMI 389 (689)
Q Consensus 317 ~t~~~ll~a~--~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~~~~~~~~~~~~li 389 (689)
|+..=+.+| .+.=+-..+++-...+.+.+-..-+ .+.-.++. .+-+.|.+++-.+.+-=+..--.|+
T Consensus 219 -tiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~-----f~~~l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~ 292 (557)
T KOG3785|consen 219 -TIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYP-----FIEYLCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLI 292 (557)
T ss_pred -HHHHHHHHHHHhhhhccchhHHHHHHHHhcccccch-----hHHHHHHcCeEEEeCCccHHHhchHHHhhChHhhhhhe
Confidence 232223333 2222222333333333332211111 11111221 2335677776655543344445566
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-----HhccCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHH
Q 036237 390 VGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNA-----CSHAGLVNDGRRYFNMMINDYGIEPT-IEHYGCLVDIL 463 (689)
Q Consensus 390 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a-----~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~ 463 (689)
--|.++++..+|..+.+++.- ..|-......+..+ ......+.-|.+.|+..- ..+..-| +.--.++...+
T Consensus 293 iYyL~q~dVqeA~~L~Kdl~P--ttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG-~Sa~ecDTIpGRQsmAs~f 369 (557)
T KOG3785|consen 293 IYYLNQNDVQEAISLCKDLDP--TTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVG-ESALECDTIPGRQSMASYF 369 (557)
T ss_pred eeecccccHHHHHHHHhhcCC--CChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhc-ccccccccccchHHHHHHH
Confidence 678999999999999887643 44544444433322 222234566777777655 3344433 44556777777
Q ss_pred HhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchhH-HHHHHHHHhcCCcchHHH
Q 036237 464 CRTGYLEEAKSTIESMP--MRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCY-VVLSNIYAAAGQWDKVSE 540 (689)
Q Consensus 464 ~~~g~~~~A~~~~~~~~--~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~-~~L~~~~~~~g~~~~A~~ 540 (689)
.-..++++.+..+..+. +..|...--.+..+.+..|++.+|+++|-++-..+-.|...| ..|+.+|.+.|+.+-|..
T Consensus 370 FL~~qFddVl~YlnSi~sYF~NdD~Fn~N~AQAk~atgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~ 449 (557)
T KOG3785|consen 370 FLSFQFDDVLTYLNSIESYFTNDDDFNLNLAQAKLATGNYVEAEELFIRISGPEIKNKILYKSMLARCYIRNKKPQLAWD 449 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCcchhhhHHHHHHHHhcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHHHH
Confidence 77788999998888874 333444445688899999999999999988877663343444 578899999999999987
Q ss_pred HHHHH
Q 036237 541 VREMM 545 (689)
Q Consensus 541 ~~~~m 545 (689)
++-++
T Consensus 450 ~~lk~ 454 (557)
T KOG3785|consen 450 MMLKT 454 (557)
T ss_pred HHHhc
Confidence 76544
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.91 E-value=1.5e-06 Score=93.83 Aligned_cols=504 Identities=13% Similarity=0.011 Sum_probs=269.0
Q ss_pred hHHHHHHHHHHHhCCCCC-chHHHHHhhcccccCCCCHHHHHHHHhcccC--CCChhhHHHHHHHHHhCCCchHHHHHHH
Q 036237 35 KETQQLHALSVKTNLIYH-SGISSRLLSLYVDPHINNLHYARSIFDRILQ--HPSLVLYNLLIKCYVFNQRSHEALTLFC 111 (689)
Q Consensus 35 ~~~~~~~~~~~~~g~~~~-~~~~~~ll~~~~~~~~g~~~~A~~~f~~~~~--~~~~~~~~~ll~~~~~~g~~~~a~~~~~ 111 (689)
.....+|..+....+.++ ...|..|-..|+. ..+...|...|+...+ ..++.+|-.....|++..+++.|..+.-
T Consensus 473 ~~~~al~ali~alrld~~~apaf~~LG~iYrd--~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l 550 (1238)
T KOG1127|consen 473 NSALALHALIRALRLDVSLAPAFAFLGQIYRD--SDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICL 550 (1238)
T ss_pred hHHHHHHHHHHHHhcccchhHHHHHHHHHHHH--HHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHH
Confidence 345556666655555554 4678888888888 6688899999988764 5667788999999999999999999833
Q ss_pred HhHhCCCC-CCcccHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhhCCCCCeeh
Q 036237 112 DLLDRFLL-PDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVS 190 (689)
Q Consensus 112 ~m~~~g~~-p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~ 190 (689)
..-+.... .-...|...--.+...++...+..-|....+.. +.|...|..|..+|.++|++..|.++|++...-++.+
T Consensus 551 ~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s 629 (1238)
T KOG1127|consen 551 RAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLS 629 (1238)
T ss_pred HHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHh
Confidence 32221100 011122222223445677777877777777665 5678899999999999999999999998877655544
Q ss_pred HHHH---HHHHHhCCChHHHHHHHhhCCCC----------CcchHHHHHHHHHhCCChHHHHHHHhhcCc----------
Q 036237 191 WNCL---IDGYVKKGEVEVAMKLFDEMPDR----------DLFSWTCLVDGFSKCGKVEIAREIFYRMPN---------- 247 (689)
Q Consensus 191 ~~~l---i~~~~~~g~~~~A~~~~~~m~~~----------d~~~~~~li~~~~~~g~~~~A~~~~~~~~~---------- 247 (689)
|-.- ....+..|.+.+|+..+...... -..++--+...+...|-..+|..+++..++
T Consensus 630 ~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~ 709 (1238)
T KOG1127|consen 630 KYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSL 709 (1238)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhh
Confidence 4322 22345568888888877766430 112222222223333333333333332221
Q ss_pred -CCc-------------------chHHHHHHHHHh----cCCH---H---HHHHHHHhcC--CCChHHHHHHHHHHHH--
Q 036237 248 -RNL-------------------VSWNAMINGYMK----AGDV---D---SACELFDDME--IRDLITWNSMIAGYEL-- 293 (689)
Q Consensus 248 -~~~-------------------~~~~~li~~~~~----~g~~---~---~A~~~~~~~~--~~~~~~~~~li~~~~~-- 293 (689)
.+. .+-..++..+.+ .+.. | -+.+.+-.-. ..+..+|..++..|.+
T Consensus 710 ~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyNLGinylr~f 789 (1238)
T KOG1127|consen 710 QSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPWYNLGINYLRYF 789 (1238)
T ss_pred hhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchHHHHhHHHHHHH
Confidence 011 111111111111 1111 0 0000000000 0134456656555443
Q ss_pred --cC----ChHHHHHHHHHhccCCCCcChhhHHHHHHHHHcccchhhHHHHHHHHHHhCC-ccchhHHhHHHhhHHhcCC
Q 036237 294 --NG----RFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGF-VVDGVLGTLLIQMYSKCGS 366 (689)
Q Consensus 294 --~g----~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~-~~~~~~~~~li~~~~~~g~ 366 (689)
.| +...|+..+.+..+. ..+...+-..+...+..|++.-+ .|..+...-. +....+|..+.-.+.+..+
T Consensus 790 ~~l~et~~~~~~Ai~c~KkaV~L--~ann~~~WnaLGVlsg~gnva~a--QHCfIks~~sep~~~~~W~NlgvL~l~n~d 865 (1238)
T KOG1127|consen 790 LLLGETMKDACTAIRCCKKAVSL--CANNEGLWNALGVLSGIGNVACA--QHCFIKSRFSEPTCHCQWLNLGVLVLENQD 865 (1238)
T ss_pred HHcCCcchhHHHHHHHHHHHHHH--hhccHHHHHHHHHhhccchhhhh--hhhhhhhhhccccchhheeccceeEEeccc
Confidence 11 223566777766543 23333333344444444444333 3333333222 3345566666666667777
Q ss_pred HHHHHHHHHhcCC---CChhhHHHHHHHHHHcCCHHHHHHHHHH------------------------------------
Q 036237 367 IESALTVFRAISK---KKVGHWTAMIVGLGMHGMATQALDLFNK------------------------------------ 407 (689)
Q Consensus 367 ~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~------------------------------------ 407 (689)
++-|...|..... .|...|--........|+.-++..+|..
T Consensus 866 ~E~A~~af~~~qSLdP~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t 945 (1238)
T KOG1127|consen 866 FEHAEPAFSSVQSLDPLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINT 945 (1238)
T ss_pred HHHhhHHHHhhhhcCchhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHH
Confidence 7777777766554 2333443333333333333333333332
Q ss_pred ---HHHC---------CCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHH----HHHHHHHhcCCHHH
Q 036237 408 ---MCRM---------GMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYG----CLVDILCRTGYLEE 471 (689)
Q Consensus 408 ---m~~~---------g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~----~li~~~~~~g~~~~ 471 (689)
.... |.+-+...|........+.+...+|.....+.+.-...+-+...|+ .+...+...|.++.
T Consensus 946 ~~ki~sAs~al~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~RliglLe~k~d~sqynvak~~~gRL~lslgefe~ 1025 (1238)
T KOG1127|consen 946 ARKISSASLALSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRLIGLLELKLDESQYNVAKPDAGRLELSLGEFES 1025 (1238)
T ss_pred hhhhhhhHHHHHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhcchhh
Confidence 1110 1222234555555555666666666665555442111223334444 33445566677777
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCc---hhHHHHHHHHHhcCCcchHHHHHHHHH
Q 036237 472 AKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTI---GCYVVLSNIYAAAGQWDKVSEVREMMK 546 (689)
Q Consensus 472 A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~---~~~~~L~~~~~~~g~~~~A~~~~~~m~ 546 (689)
|..-+...+...|..+-.+-+.. .-.|+++.+...|++++.+.-++. .....++......+.-+.|...+=+..
T Consensus 1026 A~~a~~~~~~evdEdi~gt~l~l-Ffkndf~~sl~~fe~aLsis~se~d~vvLl~kva~~~g~~~~k~~A~~lLfe~~ 1102 (1238)
T KOG1127|consen 1026 AKKASWKEWMEVDEDIRGTDLTL-FFKNDFFSSLEFFEQALSISNSESDKVVLLCKVAVCMGLARQKNDAQFLLFEVK 1102 (1238)
T ss_pred HhhhhcccchhHHHHHhhhhHHH-HHHhHHHHHHHHHHHHhhhcccccchhhhhHHHHHHHhhcccchHHHHHHHHHH
Confidence 76666655444444444333333 445789999999999988543332 334455556667777788877654444
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=98.91 E-value=1.4e-05 Score=82.90 Aligned_cols=179 Identities=13% Similarity=0.067 Sum_probs=84.0
Q ss_pred HhCCCchHHHHHHHHhHhCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHH
Q 036237 98 VFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGR 177 (689)
Q Consensus 98 ~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 177 (689)
...|+.++|.+..+.-.+..+ -+.+.|..+--.+....++++|...+..+.+.+ +.|...+.-|.-.=++.|+++...
T Consensus 52 ~~lg~~~ea~~~vr~glr~d~-~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~-~dN~qilrDlslLQ~QmRd~~~~~ 129 (700)
T KOG1156|consen 52 NCLGKKEEAYELVRLGLRNDL-KSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIE-KDNLQILRDLSLLQIQMRDYEGYL 129 (700)
T ss_pred hcccchHHHHHHHHHHhccCc-ccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHHHhhhhHH
Confidence 344556666665555444321 234445554444445555666666666666554 344445544444444445554444
Q ss_pred HHHhhCCC---CCeehHHHHHHHHHhCCChHHHHHHHhhCCC-----CCcchHHHHH------HHHHhCCChHHHHHHHh
Q 036237 178 RVFDAMDD---KDLVSWNCLIDGYVKKGEVEVAMKLFDEMPD-----RDLFSWTCLV------DGFSKCGKVEIAREIFY 243 (689)
Q Consensus 178 ~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~d~~~~~~li------~~~~~~g~~~~A~~~~~ 243 (689)
..-....+ ..-..|..+..++--.|....|..+.+...+ ++...|.-.. ......|..++|.+.+.
T Consensus 130 ~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~ 209 (700)
T KOG1156|consen 130 ETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLL 209 (700)
T ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHH
Confidence 43333322 2334566666666666666666665555432 2222222111 12334455555555444
Q ss_pred hcCc---CCcchHHHHHHHHHhcCCHHHHHHHHHhcCC
Q 036237 244 RMPN---RNLVSWNAMINGYMKAGDVDSACELFDDMEI 278 (689)
Q Consensus 244 ~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 278 (689)
.-.. .....--.-.+.+.+.+++++|..++..+..
T Consensus 210 ~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~ 247 (700)
T KOG1156|consen 210 DNEKQIVDKLAFEETKADLLMKLGQLEEAVKVYRRLLE 247 (700)
T ss_pred hhhhHHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHh
Confidence 3322 1112222333445555555555555555543
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.89 E-value=1.9e-05 Score=81.12 Aligned_cols=128 Identities=11% Similarity=0.007 Sum_probs=84.3
Q ss_pred HHHHHHHHHhc--cCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHH--------hCC-CCCCHH
Q 036237 419 TFIGVLNACSH--AGLVNDGRRYFNMMINDYGIEPT-IEHYGCLVDILCRTGYLEEAKSTIE--------SMP-MRPNFV 486 (689)
Q Consensus 419 t~~~ll~a~~~--~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~--------~~~-~~p~~~ 486 (689)
.+..++..+.. ......+..++..... +.+-. ..+.-.++......|+++.|.+++. ..+ +.-.+.
T Consensus 341 ~~~~ll~~~t~~~~~~~~ka~e~L~~~~~--~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P~ 418 (652)
T KOG2376|consen 341 LFPILLQEATKVREKKHKKAIELLLQFAD--GHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLPG 418 (652)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHhc--cCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccChh
Confidence 44455544432 2246677777776653 22222 4566678888999999999999998 432 333455
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHhh----cCCCC---chhHHHHHHHHHhcCCcchHHHHHHHHHhC
Q 036237 487 IWMSLLSGARNHGNKDIGEYAANNLIK----VAPDT---IGCYVVLSNIYAAAGQWDKVSEVREMMKKR 548 (689)
Q Consensus 487 ~~~~ll~~~~~~g~~~~a~~~~~~~~~----~~p~~---~~~~~~L~~~~~~~g~~~~A~~~~~~m~~~ 548 (689)
+..++...+.+.++.+.|..++..++. -.+.. ...+..++..-.+.|+-++|..+++++.+.
T Consensus 419 ~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~ 487 (652)
T KOG2376|consen 419 TVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKF 487 (652)
T ss_pred HHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHh
Confidence 666777777888888888888887766 12222 223334445556789999999999998763
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.87 E-value=6.4e-06 Score=87.17 Aligned_cols=397 Identities=14% Similarity=0.145 Sum_probs=254.5
Q ss_pred CCchHHHHHhh--cccccCCCCHHHHHHHHhcccCCCChhhHHHHHHHHHhCCCchHHHHHHHHhHhC-C--------CC
Q 036237 51 YHSGISSRLLS--LYVDPHINNLHYARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDR-F--------LL 119 (689)
Q Consensus 51 ~~~~~~~~ll~--~~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~-g--------~~ 119 (689)
-|..+-.++++ .|.. -|+.+.|.+-..-+. +-..|..|.+.+++..+++-|.-.+..|... | -.
T Consensus 724 Cd~~TRkaml~FSfyvt--iG~MD~AfksI~~Ik---S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~ 798 (1416)
T KOG3617|consen 724 CDESTRKAMLDFSFYVT--IGSMDAAFKSIQFIK---SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQN 798 (1416)
T ss_pred cCHHHHHhhhceeEEEE--eccHHHHHHHHHHHh---hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhC
Confidence 35666666664 6777 899999998877765 4567999999999999999888887776531 1 12
Q ss_pred CCcccHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhhCCCC-CeehHHHHHHHH
Q 036237 120 PDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDK-DLVSWNCLIDGY 198 (689)
Q Consensus 120 p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~~~~~li~~~ 198 (689)
|+ .+=..+.-.....|.+++|+.++.+..+.. .|=..|-..|.+++|.++-+.-..- =-.||..-..-+
T Consensus 799 ~~-e~eakvAvLAieLgMlEeA~~lYr~ckR~D---------LlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~L 868 (1416)
T KOG3617|consen 799 GE-EDEAKVAVLAIELGMLEEALILYRQCKRYD---------LLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYL 868 (1416)
T ss_pred Cc-chhhHHHHHHHHHhhHHHHHHHHHHHHHHH---------HHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHH
Confidence 32 222222223347899999999999887643 3445677889999999987643221 123555566666
Q ss_pred HhCCChHHHHHHHhhCCC-----------------------CCcchHHHHHHHHHhCCChHHHHHHHhhcCcCCcchHHH
Q 036237 199 VKKGEVEVAMKLFDEMPD-----------------------RDLFSWTCLVDGFSKCGKVEIAREIFYRMPNRNLVSWNA 255 (689)
Q Consensus 199 ~~~g~~~~A~~~~~~m~~-----------------------~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 255 (689)
-..++.+.|++.|++... +|...|.-...-+-..|+.+.|+.+|..+. -|-+
T Consensus 869 ear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~-----D~fs 943 (1416)
T KOG3617|consen 869 EARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAK-----DYFS 943 (1416)
T ss_pred HhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhh-----hhhh
Confidence 667888888888877643 133344444444556788888888887753 4677
Q ss_pred HHHHHHhcCCHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHhccCCCCcChhhHHHHHHHHHcccc----
Q 036237 256 MINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAV---- 331 (689)
Q Consensus 256 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~---- 331 (689)
++...+-.|+.++|-++-++- .|......+...|-..|++.+|..+|.+.+ +|...|+.|-..+.
T Consensus 944 ~VrI~C~qGk~~kAa~iA~es--gd~AAcYhlaR~YEn~g~v~~Av~FfTrAq---------afsnAIRlcKEnd~~d~L 1012 (1416)
T KOG3617|consen 944 MVRIKCIQGKTDKAARIAEES--GDKAACYHLARMYENDGDVVKAVKFFTRAQ---------AFSNAIRLCKENDMKDRL 1012 (1416)
T ss_pred heeeEeeccCchHHHHHHHhc--ccHHHHHHHHHHhhhhHHHHHHHHHHHHHH---------HHHHHHHHHHhcCHHHHH
Confidence 777788888999888887763 366777788999999999999999998875 34444544432221
Q ss_pred -----------hhhHHHHHHHHHHhCCccchhHHhHHHhhHHhcCCHHHHHHHHHhcCC--------------CChhhHH
Q 036237 332 -----------LNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISK--------------KKVGHWT 386 (689)
Q Consensus 332 -----------~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--------------~~~~~~~ 386 (689)
.-.|-.+|+ +.|.. ....+..|-|.|.+.+|+++--+-.+ .|+...+
T Consensus 1013 ~nlal~s~~~d~v~aArYyE---e~g~~-----~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~ 1084 (1416)
T KOG3617|consen 1013 ANLALMSGGSDLVSAARYYE---ELGGY-----AHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLR 1084 (1416)
T ss_pred HHHHhhcCchhHHHHHHHHH---Hcchh-----hhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHH
Confidence 112222222 22211 12244567788888777765322221 2455566
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC----hhHHHHHHHH
Q 036237 387 AMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPT----IEHYGCLVDI 462 (689)
Q Consensus 387 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~~ 462 (689)
--...|..+.++++|..++-...+ |...+..|.. .++.-..++-+.|.....-.|+ ......+.+.
T Consensus 1085 RcadFF~~~~qyekAV~lL~~ar~---------~~~AlqlC~~-~nv~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~ 1154 (1416)
T KOG3617|consen 1085 RCADFFENNQQYEKAVNLLCLARE---------FSGALQLCKN-RNVRVTEEFAELMTPTKDDMPNEQERKQVLEQVAEL 1154 (1416)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHH---------HHHHHHHHhc-CCCchhHHHHHhcCcCcCCCccHHHHHHHHHHHHHH
Confidence 666677788888888888766554 3334444433 3334444444444322222333 2456677788
Q ss_pred HHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChH
Q 036237 463 LCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKD 502 (689)
Q Consensus 463 ~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~ 502 (689)
+.+.|.+..|-+-|-+++.+ ..-+.++.+.||.+
T Consensus 1155 c~qQG~Yh~AtKKfTQAGdK------l~AMraLLKSGdt~ 1188 (1416)
T KOG3617|consen 1155 CLQQGAYHAATKKFTQAGDK------LSAMRALLKSGDTQ 1188 (1416)
T ss_pred HHhccchHHHHHHHhhhhhH------HHHHHHHHhcCCcc
Confidence 88999999988888887633 22345566777765
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.85 E-value=8e-08 Score=98.09 Aligned_cols=218 Identities=13% Similarity=0.100 Sum_probs=170.2
Q ss_pred HcccchhhHHHHHHHHHHhCCccchhHHhHHHhhHHhcCCHHHHHHHHHhcCC---CChhhHHHHHHHHHHcCCHHHHHH
Q 036237 327 AGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISK---KKVGHWTAMIVGLGMHGMATQALD 403 (689)
Q Consensus 327 ~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~ 403 (689)
.+.|++.+|.-.|+..++.. +.+...|.-|.......++-..|+..+++..+ .+....-+|.-.|...|.-.+|++
T Consensus 296 m~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al~ 374 (579)
T KOG1125|consen 296 MKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQALK 374 (579)
T ss_pred HhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHHH
Confidence 45666777777777777665 44677777788888888888888888888776 356677778888999999999999
Q ss_pred HHHHHHHCCCC--------CCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHH
Q 036237 404 LFNKMCRMGMK--------PTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKST 475 (689)
Q Consensus 404 l~~~m~~~g~~--------p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 475 (689)
.|+..+....+ ++..+-.. ..+.+...+....++|-.+....+..+|+.++.+|.-+|--.|.+++|.+.
T Consensus 375 ~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDc 452 (579)
T KOG1125|consen 375 MLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDC 452 (579)
T ss_pred HHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHH
Confidence 99988653210 01100000 122333345566677777766667678899999999999999999999999
Q ss_pred HHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCcchHHHHHHHHHh
Q 036237 476 IESM-PMRP-NFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKK 547 (689)
Q Consensus 476 ~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~~~~~g~~~~A~~~~~~m~~ 547 (689)
|+.+ .++| |..+||-|...++...+.++|+..|.+++++.|.-+.+.+.|+..|...|.+++|.+.|=....
T Consensus 453 f~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~ 526 (579)
T KOG1125|consen 453 FEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALS 526 (579)
T ss_pred HHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHH
Confidence 9986 5677 6779999999999999999999999999999999999999999999999999999998877653
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.84 E-value=1.9e-07 Score=88.37 Aligned_cols=222 Identities=14% Similarity=0.094 Sum_probs=170.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhcCC--CChHHHHHHHHHHHHcCChHHHHHHHHHhccCCCCcChhhHH-HHHHHHHccc
Q 036237 254 NAMINGYMKAGDVDSACELFDDMEI--RDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLV-SALSAVAGLA 330 (689)
Q Consensus 254 ~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~-~ll~a~~~~~ 330 (689)
+.+...|.+.|-+.+|++.|+...+ +-+.+|-.|-..|.+..+++.|+.+|.+-++ ..|-.+||. ...+.+...+
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q~~~~dTfllLskvY~ridQP~~AL~~~~~gld--~fP~~VT~l~g~ARi~eam~ 304 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQFPHPDTFLLLSKVYQRIDQPERALLVIGEGLD--SFPFDVTYLLGQARIHEAME 304 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhcCCchhHHHHHHHHHHHhccHHHHHHHHhhhhh--cCCchhhhhhhhHHHHHHHH
Confidence 4677888888888888888887653 4677888888888888889999888888765 356666664 4556677778
Q ss_pred chhhHHHHHHHHHHhCCccchhHHhHHHhhHHhcCCHHHHHHHHHhcCC---CChhhHHHHHHHHHHcCCHHHHHHHHHH
Q 036237 331 VLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISK---KKVGHWTAMIVGLGMHGMATQALDLFNK 407 (689)
Q Consensus 331 ~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~ 407 (689)
+.+.+.++++.+.+.. +.++....++...|.-.++.+.|...++++.+ .++..|+.+.-+|.-.++++-++.-|.+
T Consensus 305 ~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~D~~L~sf~R 383 (478)
T KOG1129|consen 305 QQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQIDLVLPSFQR 383 (478)
T ss_pred hHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcchhhhHHHHHH
Confidence 8888888888888765 34556666677778888999999999988765 5777899998889999999999999999
Q ss_pred HHHCCCCCCHH--HHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCC
Q 036237 408 MCRMGMKPTAI--TFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMP 480 (689)
Q Consensus 408 m~~~g~~p~~~--t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 480 (689)
....--.|+.. .|-.+.......|++.-|.+.|+.... .-....+.+|.|.-+-.+.|++++|..++....
T Consensus 384 Alstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~--~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~ 456 (478)
T KOG1129|consen 384 ALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALT--SDAQHGEALNNLAVLAARSGDILGARSLLNAAK 456 (478)
T ss_pred HHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhc--cCcchHHHHHhHHHHHhhcCchHHHHHHHHHhh
Confidence 88765556643 466666666778899999998888773 222335777888777788888888888887663
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.83 E-value=0.00013 Score=86.14 Aligned_cols=261 Identities=15% Similarity=0.006 Sum_probs=152.4
Q ss_pred HHHHHcCChHHHHHHHHHhccCCCCcCh----hhHHHHHHHHHcccchhhHHHHHHHHHHh----CC-ccchhHHhHHHh
Q 036237 289 AGYELNGRFMEALELLETMLIGDVLPND----ATLVSALSAVAGLAVLNKGRWMHSYIVKN----GF-VVDGVLGTLLIQ 359 (689)
Q Consensus 289 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~t~~~ll~a~~~~~~~~~a~~i~~~~~~~----g~-~~~~~~~~~li~ 359 (689)
..+...|++++|...+++....-...+. ...+.+...+...|+++.|...+...... |. .........+..
T Consensus 460 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~ 539 (903)
T PRK04841 460 QVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSE 539 (903)
T ss_pred HHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHH
Confidence 3345667777777777766542111111 12233333455667777777766665542 11 111233445566
Q ss_pred hHHhcCCHHHHHHHHHhcCC-------CC----hhhHHHHHHHHHHcCCHHHHHHHHHHHHHCC--CCCC--HHHHHHHH
Q 036237 360 MYSKCGSIESALTVFRAISK-------KK----VGHWTAMIVGLGMHGMATQALDLFNKMCRMG--MKPT--AITFIGVL 424 (689)
Q Consensus 360 ~~~~~g~~~~A~~~~~~~~~-------~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g--~~p~--~~t~~~ll 424 (689)
.+...|++++|...+++... ++ ...+..+...+...|++++|...+++..... ..|. ...+..+.
T Consensus 540 ~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la 619 (903)
T PRK04841 540 ILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLA 619 (903)
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHH
Confidence 67777888888777765432 11 1234445556667788888888888765421 1122 22344455
Q ss_pred HHHhccCcHHHHHHHHHHhHHhcCCCCChhHH-----HHHHHHHHhcCCHHHHHHHHHhCCCC--CCH----HHHHHHHH
Q 036237 425 NACSHAGLVNDGRRYFNMMINDYGIEPTIEHY-----GCLVDILCRTGYLEEAKSTIESMPMR--PNF----VIWMSLLS 493 (689)
Q Consensus 425 ~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~-----~~li~~~~~~g~~~~A~~~~~~~~~~--p~~----~~~~~ll~ 493 (689)
......|+.++|...++....-.........+ ......+...|+.+.|...+...... ... ..+..+..
T Consensus 620 ~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~ 699 (903)
T PRK04841 620 KISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIAR 699 (903)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHH
Confidence 56677888888888887775321111111111 11224455678888888888765311 111 12345666
Q ss_pred HHHhcCChHHHHHHHHHHhhcC------CCCchhHHHHHHHHHhcCCcchHHHHHHHHHhCC
Q 036237 494 GARNHGNKDIGEYAANNLIKVA------PDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRG 549 (689)
Q Consensus 494 ~~~~~g~~~~a~~~~~~~~~~~------p~~~~~~~~L~~~~~~~g~~~~A~~~~~~m~~~~ 549 (689)
++...|+.++|...++++++.. +....++..++.+|.+.|+.++|...+.+..+..
T Consensus 700 ~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 700 AQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 6778889999988888887632 1223467778888889999999998888887543
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.81 E-value=1.3e-06 Score=79.22 Aligned_cols=190 Identities=12% Similarity=0.067 Sum_probs=125.1
Q ss_pred HHcccchhhHHHHHHHHHHhCCccchhHHhHHHhhHHhcCCHHHHHHHHHhcCC---CChhhHHHHHHHHHHcCCHHHHH
Q 036237 326 VAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISK---KKVGHWTAMIVGLGMHGMATQAL 402 (689)
Q Consensus 326 ~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~ 402 (689)
|...|+...|+.-++.+++.. +.+..++..+...|.+.|..+.|.+.|++..+ .+....|.....+|.+|++++|.
T Consensus 45 YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg~~~eA~ 123 (250)
T COG3063 45 YLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQGRPEEAM 123 (250)
T ss_pred HHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhCCChHHHH
Confidence 333333333333333333332 22344555666667777777777777776553 34556777777778888888888
Q ss_pred HHHHHHHHCCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhCC
Q 036237 403 DLFNKMCRMGMKPT-AITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPT-IEHYGCLVDILCRTGYLEEAKSTIESMP 480 (689)
Q Consensus 403 ~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~ 480 (689)
..|++......-|. ..||..+.-+..+.|+.+.|..+|++..+ ..|+ ......+.+...+.|++..|..+++...
T Consensus 124 q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~---~dp~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~ 200 (250)
T COG3063 124 QQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALE---LDPQFPPALLELARLHYKAGDYAPARLYLERYQ 200 (250)
T ss_pred HHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHH---hCcCCChHHHHHHHHHHhcccchHHHHHHHHHH
Confidence 88888776433333 34777777777788888888888887773 3444 5666777788888888888888887762
Q ss_pred --CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCc
Q 036237 481 --MRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTI 519 (689)
Q Consensus 481 --~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 519 (689)
..++..+....+..-...||.+.+.+.-..+....|...
T Consensus 201 ~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~s~ 241 (250)
T COG3063 201 QRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPYSE 241 (250)
T ss_pred hcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcH
Confidence 336666666666666777888877777777777777654
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.80 E-value=9.2e-06 Score=79.70 Aligned_cols=256 Identities=11% Similarity=0.037 Sum_probs=118.7
Q ss_pred CCCchhHHHHHHHHHHhcCChHHHHHHHhhCCCCCeehHHHH---HHHHHhCCChHHHHHHHhhCCCCC---cchHHHHH
Q 036237 153 FGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCL---IDGYVKKGEVEVAMKLFDEMPDRD---LFSWTCLV 226 (689)
Q Consensus 153 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~l---i~~~~~~g~~~~A~~~~~~m~~~d---~~~~~~li 226 (689)
++.|+.....+...|...|+.++|...|+....-|+.+...| .-.+.+.|+.+....+...+...+ ...|-.-+
T Consensus 228 lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta~~wfV~~ 307 (564)
T KOG1174|consen 228 LRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVKYTASHWFVHA 307 (564)
T ss_pred CCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhhcchhhhhhhh
Confidence 455566666666666677777777777766554443332222 122345566665555554443322 22233333
Q ss_pred HHHHhCCChHHHHHHHhhcCcCC---cchHHHHHHHHHhcCCHHHHHHHHHhcC--CC-ChHHHHHHHHHHHHcCChHHH
Q 036237 227 DGFSKCGKVEIAREIFYRMPNRN---LVSWNAMINGYMKAGDVDSACELFDDME--IR-DLITWNSMIAGYELNGRFMEA 300 (689)
Q Consensus 227 ~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~-~~~~~~~li~~~~~~g~~~~A 300 (689)
.......+++.|+.+-++.++.+ ...+-.-.+.+...|+.++|.-.|+... .| +..+|.-|+..|...|++.+|
T Consensus 308 ~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA 387 (564)
T KOG1174|consen 308 QLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEA 387 (564)
T ss_pred hhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHH
Confidence 33344555666666666655533 2223333345556666666666666543 22 556666666666666666666
Q ss_pred HHHHHHhccCCCCcChhhHHHHH-HHHH-cccchhhHHHHHHHHHHhCCccchhHHhHHHhhHHhcCCHHHHHHHHHhcC
Q 036237 301 LELLETMLIGDVLPNDATLVSAL-SAVA-GLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAIS 378 (689)
Q Consensus 301 ~~~~~~m~~~g~~p~~~t~~~ll-~a~~-~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 378 (689)
.-+-+...+. ++.+..+...+. ..|. ....-++|+.+++...+.... -....+.+.+.+...|..++++.++++..
T Consensus 388 ~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~-Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L 465 (564)
T KOG1174|consen 388 NALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPI-YTPAVNLIAELCQVEGPTKDIIKLLEKHL 465 (564)
T ss_pred HHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCc-cHHHHHHHHHHHHhhCccchHHHHHHHHH
Confidence 6554443321 112222222221 1111 111223444444443332211 12222334444444444444444444433
Q ss_pred C--CChhhHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 036237 379 K--KKVGHWTAMIVGLGMHGMATQALDLFNKMCR 410 (689)
Q Consensus 379 ~--~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 410 (689)
. +|....+.|...+...+.+.+|++.|.....
T Consensus 466 ~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr 499 (564)
T KOG1174|consen 466 IIFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALR 499 (564)
T ss_pred hhccccHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 2 3444444444444444444444444444433
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.78 E-value=2.4e-07 Score=91.63 Aligned_cols=81 Identities=11% Similarity=0.057 Sum_probs=50.9
Q ss_pred CCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCc-chHHHHHH
Q 036237 467 GYLEEAKSTIESMP--MRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQW-DKVSEVRE 543 (689)
Q Consensus 467 g~~~~A~~~~~~~~--~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~~~~~g~~-~~A~~~~~ 543 (689)
+.+.+|..+|+++. ..+++.+.+.+..+....|++++|+.+++++++.+|+++.+...++-+....|+. +.+.+++.
T Consensus 181 e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~ 260 (290)
T PF04733_consen 181 EKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLS 260 (290)
T ss_dssp TCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHH
Confidence 34666666666652 2356666666666777777777777777777777777777777777777777776 44556666
Q ss_pred HHHh
Q 036237 544 MMKK 547 (689)
Q Consensus 544 ~m~~ 547 (689)
+++.
T Consensus 261 qL~~ 264 (290)
T PF04733_consen 261 QLKQ 264 (290)
T ss_dssp HCHH
T ss_pred HHHH
Confidence 6654
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=98.77 E-value=5.4e-06 Score=88.16 Aligned_cols=124 Identities=16% Similarity=0.146 Sum_probs=76.9
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhCC-CC-CCHHHHHHHHHHHH
Q 036237 420 FIGVLNACSHAGLVNDGRRYFNMMINDYGIEPT-IEHYGCLVDILCRTGYLEEAKSTIESMP-MR-PNFVIWMSLLSGAR 496 (689)
Q Consensus 420 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~-p~~~~~~~ll~~~~ 496 (689)
+..+...|.+.|++++|+++.+..+. ..|+ +..|..-...|-+.|++++|.+.++... .. .|..+=+-....+.
T Consensus 197 ~~~lAqhyd~~g~~~~Al~~Id~aI~---htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~L 273 (517)
T PF12569_consen 197 LYFLAQHYDYLGDYEKALEYIDKAIE---HTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLL 273 (517)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHh---cCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHH
Confidence 34444556667777777777777762 3455 5667777777777777777777776653 22 24444444555566
Q ss_pred hcCChHHHHHHHHHHhhcC--CCC-------chhHHHHHHHHHhcCCcchHHHHHHHHH
Q 036237 497 NHGNKDIGEYAANNLIKVA--PDT-------IGCYVVLSNIYAAAGQWDKVSEVREMMK 546 (689)
Q Consensus 497 ~~g~~~~a~~~~~~~~~~~--p~~-------~~~~~~L~~~~~~~g~~~~A~~~~~~m~ 546 (689)
+.|++++|+..+......+ |.. .......+.+|.+.|++..|...+..+.
T Consensus 274 Ra~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~ 332 (517)
T PF12569_consen 274 RAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVL 332 (517)
T ss_pred HCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 7777777777766655433 211 1223456777888888888877666554
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.72 E-value=1.8e-05 Score=75.85 Aligned_cols=307 Identities=13% Similarity=0.091 Sum_probs=195.4
Q ss_pred HHHHHHHHhCCChHHHHHHHhhCCCCCcchHHHHHH---HHHhCCChHHHHHHHhhcCcCCcchHHHHH---HHHHhcCC
Q 036237 192 NCLIDGYVKKGEVEVAMKLFDEMPDRDLFSWTCLVD---GFSKCGKVEIAREIFYRMPNRNLVSWNAMI---NGYMKAGD 265 (689)
Q Consensus 192 ~~li~~~~~~g~~~~A~~~~~~m~~~d~~~~~~li~---~~~~~g~~~~A~~~~~~~~~~~~~~~~~li---~~~~~~g~ 265 (689)
-.+-+.+...|++.+|+.-|....+-|+..|.++.. .|...|+...|+.-+.++++..+..+.+-+ ..+.|.|.
T Consensus 42 lElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vllK~Ge 121 (504)
T KOG0624|consen 42 LELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVLLKQGE 121 (504)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhhhhccc
Confidence 356777788888999999998888877777777654 577778877777777777654444443333 45678888
Q ss_pred HHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHhccCCCCcChhhHHHHHHHHHcccchhhHHHHHHHHHHh
Q 036237 266 VDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKN 345 (689)
Q Consensus 266 ~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~ 345 (689)
++.|..=|+.+...++. -+....++.+.-..++-.. ....+..+...|+...++.....+++.
T Consensus 122 le~A~~DF~~vl~~~~s-~~~~~eaqskl~~~~e~~~----------------l~~ql~s~~~~GD~~~ai~~i~~llEi 184 (504)
T KOG0624|consen 122 LEQAEADFDQVLQHEPS-NGLVLEAQSKLALIQEHWV----------------LVQQLKSASGSGDCQNAIEMITHLLEI 184 (504)
T ss_pred HHHHHHHHHHHHhcCCC-cchhHHHHHHHHhHHHHHH----------------HHHHHHHHhcCCchhhHHHHHHHHHhc
Confidence 88888888777643221 0001111111111111111 112233344556666666666666654
Q ss_pred CCccchhHHhHHHhhHHhcCCHHHHHHHHHhcC---CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHH---
Q 036237 346 GFVVDGVLGTLLIQMYSKCGSIESALTVFRAIS---KKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAIT--- 419 (689)
Q Consensus 346 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t--- 419 (689)
. +.|...+..-..+|...|++..|+.-++... ..+.....-+-..+...|+.+.++...++-.+ +.||...
T Consensus 185 ~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLK--ldpdHK~Cf~ 261 (504)
T KOG0624|consen 185 Q-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLK--LDPDHKLCFP 261 (504)
T ss_pred C-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHc--cCcchhhHHH
Confidence 3 4566777777778888888888876665443 35666666677777788888888888888776 5677542
Q ss_pred -HHHH---------HHHHhccCcHHHHHHHHHHhHHhcCCCCC-----hhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC
Q 036237 420 -FIGV---------LNACSHAGLVNDGRRYFNMMINDYGIEPT-----IEHYGCLVDILCRTGYLEEAKSTIESM-PMRP 483 (689)
Q Consensus 420 -~~~l---------l~a~~~~g~~~~a~~~~~~~~~~~~~~p~-----~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p 483 (689)
|..| +......+.+.++....+...+ ..|. ...+..+-..+...|++.+|++...+. .+.|
T Consensus 262 ~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk---~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~ 338 (504)
T KOG0624|consen 262 FYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLK---NEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDP 338 (504)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHh---cCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCc
Confidence 2111 1123345666677776666663 3344 233445566777788888888877765 4556
Q ss_pred C-HHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchh
Q 036237 484 N-FVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGC 521 (689)
Q Consensus 484 ~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 521 (689)
| +.++.--..+|.....++.|+.-|+++.+.+|++..+
T Consensus 339 ~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~~~ 377 (504)
T KOG0624|consen 339 DDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESNTRA 377 (504)
T ss_pred hHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccHHH
Confidence 5 6677777888888888888888888888888877543
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.70 E-value=1.1e-06 Score=86.90 Aligned_cols=226 Identities=12% Similarity=0.062 Sum_probs=145.2
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHhccCCCCcChhhHHHHHHHHHcccchhhHHHHHHHHHHhCCc-cchhHHhHHHhhH
Q 036237 283 TWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFV-VDGVLGTLLIQMY 361 (689)
Q Consensus 283 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~-~~~~~~~~li~~~ 361 (689)
...-+.++|...|+++.++. +..... .|.......+...+....+-+.+..-+......... .+..+......+|
T Consensus 37 ~~~~~~Rs~iAlg~~~~vl~---ei~~~~-~~~l~av~~la~y~~~~~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~ 112 (290)
T PF04733_consen 37 RDFYQYRSYIALGQYDSVLS---EIKKSS-SPELQAVRLLAEYLSSPSDKESALEELKELLADQAGESNEIVQLLAATIL 112 (290)
T ss_dssp HHHHHHHHHHHTT-HHHHHH---HS-TTS-SCCCHHHHHHHHHHCTSTTHHCHHHHHHHCCCTS---CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCChhHHHH---HhccCC-ChhHHHHHHHHHHHhCccchHHHHHHHHHHHHhccccccHHHHHHHHHHH
Confidence 34455566777777665443 332222 444444433333332222222332222222212212 2333334445667
Q ss_pred HhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc----cCcHHHHH
Q 036237 362 SKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSH----AGLVNDGR 437 (689)
Q Consensus 362 ~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~----~g~~~~a~ 437 (689)
...|++++|.+++... .+.......+..|.+.++++.|.+.++.|.+ +..|. +...+..++.. ...+.+|.
T Consensus 113 ~~~~~~~~AL~~l~~~--~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~--~~eD~-~l~qLa~awv~l~~g~e~~~~A~ 187 (290)
T PF04733_consen 113 FHEGDYEEALKLLHKG--GSLELLALAVQILLKMNRPDLAEKELKNMQQ--IDEDS-ILTQLAEAWVNLATGGEKYQDAF 187 (290)
T ss_dssp CCCCHHHHHHCCCTTT--TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHC--CSCCH-HHHHHHHHHHHHHHTTTCCCHHH
T ss_pred HHcCCHHHHHHHHHcc--CcccHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCcH-HHHHHHHHHHHHHhCchhHHHHH
Confidence 7889999999998875 5677777889999999999999999999987 34443 34444444432 34689999
Q ss_pred HHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCh-HHHHHHHHHHhhc
Q 036237 438 RYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESM-PMRP-NFVIWMSLLSGARNHGNK-DIGEYAANNLIKV 514 (689)
Q Consensus 438 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~-~~a~~~~~~~~~~ 514 (689)
.+|+++.. ...+++.+.+.+.-+....|++++|.+++.+. ...| |+.++..++......|+. +.+.+...++...
T Consensus 188 y~f~El~~--~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~ 265 (290)
T PF04733_consen 188 YIFEELSD--KFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQS 265 (290)
T ss_dssp HHHHHHHC--CS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHH
T ss_pred HHHHHHHh--ccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHh
Confidence 99999985 45688899999999999999999999999885 3344 566788888888888887 7788899999999
Q ss_pred CCCCc
Q 036237 515 APDTI 519 (689)
Q Consensus 515 ~p~~~ 519 (689)
.|+.+
T Consensus 266 ~p~h~ 270 (290)
T PF04733_consen 266 NPNHP 270 (290)
T ss_dssp TTTSH
T ss_pred CCCCh
Confidence 99765
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=98.70 E-value=7e-05 Score=78.53 Aligned_cols=343 Identities=17% Similarity=0.161 Sum_probs=177.7
Q ss_pred HHHhcCChHHHHHHHhhCCCCCeeh--HHHHHHHHHhCCChHHHHHHHhhCCCCCcchHHHHHHHHHhCCChHHHHHHHh
Q 036237 166 MYAKFGEIDLGRRVFDAMDDKDLVS--WNCLIDGYVKKGEVEVAMKLFDEMPDRDLFSWTCLVDGFSKCGKVEIAREIFY 243 (689)
Q Consensus 166 ~~~~~g~~~~A~~~~~~m~~~~~~~--~~~li~~~~~~g~~~~A~~~~~~m~~~d~~~~~~li~~~~~~g~~~~A~~~~~ 243 (689)
+......+.+|..+++.+..+++.+ |..+..-|+..|+++-|.++|.+. ..++-.|..|.+.|+++.|.++-.
T Consensus 741 aai~akew~kai~ildniqdqk~~s~yy~~iadhyan~~dfe~ae~lf~e~-----~~~~dai~my~k~~kw~da~kla~ 815 (1636)
T KOG3616|consen 741 AAIGAKEWKKAISILDNIQDQKTASGYYGEIADHYANKGDFEIAEELFTEA-----DLFKDAIDMYGKAGKWEDAFKLAE 815 (1636)
T ss_pred HHhhhhhhhhhHhHHHHhhhhccccccchHHHHHhccchhHHHHHHHHHhc-----chhHHHHHHHhccccHHHHHHHHH
Confidence 3344555666666666665544332 555566666666666666666553 234455666666666666666666
Q ss_pred hcCcCC--cchHHHHHHHHHhcCCHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHhccCCCCcChhhHHH
Q 036237 244 RMPNRN--LVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVS 321 (689)
Q Consensus 244 ~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ 321 (689)
+...|. ...|-+-..-.-+.|++.+|++++-.+..|+. -|..|-+.|..+..+++..+-...- -..|-..
T Consensus 816 e~~~~e~t~~~yiakaedldehgkf~eaeqlyiti~~p~~-----aiqmydk~~~~ddmirlv~k~h~d~---l~dt~~~ 887 (1636)
T KOG3616|consen 816 ECHGPEATISLYIAKAEDLDEHGKFAEAEQLYITIGEPDK-----AIQMYDKHGLDDDMIRLVEKHHGDH---LHDTHKH 887 (1636)
T ss_pred HhcCchhHHHHHHHhHHhHHhhcchhhhhheeEEccCchH-----HHHHHHhhCcchHHHHHHHHhChhh---hhHHHHH
Confidence 655443 33444444455566666666666666665543 2455666677776666665543211 1223444
Q ss_pred HHHHHHcccchhhHHHHHHHHHHhCCccchhHHhHHHhhHHhcCCHHHHHHHHHhcCCCCh-----hhHHH------HHH
Q 036237 322 ALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKV-----GHWTA------MIV 390 (689)
Q Consensus 322 ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-----~~~~~------li~ 390 (689)
+..-+...|++..|+.-|-... -+.+-++||-..+.+++|.++-+.-...+. ..|.. .+.
T Consensus 888 f~~e~e~~g~lkaae~~flea~---------d~kaavnmyk~s~lw~dayriaktegg~n~~k~v~flwaksiggdaavk 958 (1636)
T KOG3616|consen 888 FAKELEAEGDLKAAEEHFLEAG---------DFKAAVNMYKASELWEDAYRIAKTEGGANAEKHVAFLWAKSIGGDAAVK 958 (1636)
T ss_pred HHHHHHhccChhHHHHHHHhhh---------hHHHHHHHhhhhhhHHHHHHHHhccccccHHHHHHHHHHHhhCcHHHHH
Confidence 5556666777777776654332 355678889999999999888765433222 23322 122
Q ss_pred HHHHcCCHHH-------------HHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhc--CC-----C
Q 036237 391 GLGMHGMATQ-------------ALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDY--GI-----E 450 (689)
Q Consensus 391 ~~~~~g~~~~-------------A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~--~~-----~ 450 (689)
.+-++|-.++ |.++-+-..+.. .|. ....+..-+...|++++|-+.|-+.++-. ++ .
T Consensus 959 llnk~gll~~~id~a~d~~afd~afdlari~~k~k-~~~--vhlk~a~~ledegk~edaskhyveaiklntynitwcqav 1035 (1636)
T KOG3616|consen 959 LLNKHGLLEAAIDFAADNCAFDFAFDLARIAAKDK-MGE--VHLKLAMFLEDEGKFEDASKHYVEAIKLNTYNITWCQAV 1035 (1636)
T ss_pred HHHhhhhHHHHhhhhhcccchhhHHHHHHHhhhcc-Ccc--chhHHhhhhhhccchhhhhHhhHHHhhcccccchhhhcc
Confidence 2333333333 333332222211 121 11223334567788888877776655311 10 1
Q ss_pred CChhHH---------HHHHHHHHhcCCHHHHHHHHHhCCCCCCHH--HHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCc
Q 036237 451 PTIEHY---------GCLVDILCRTGYLEEAKSTIESMPMRPNFV--IWMSLLSGARNHGNKDIGEYAANNLIKVAPDTI 519 (689)
Q Consensus 451 p~~~~~---------~~li~~~~~~g~~~~A~~~~~~~~~~p~~~--~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 519 (689)
|+..-. ..-+.++.+..+|+.|.++-+.-- ||.. ++..-..+....|++..|+.++-++ ..|+
T Consensus 1036 psrfd~e~ir~gnkpe~av~mfi~dndwa~aervae~h~--~~~l~dv~tgqar~aiee~d~~kae~fllra--nkp~-- 1109 (1636)
T KOG3616|consen 1036 PSRFDAEFIRAGNKPEEAVEMFIHDNDWAAAERVAEAHC--EDLLADVLTGQARGAIEEGDFLKAEGFLLRA--NKPD-- 1109 (1636)
T ss_pred cchhhHHHHHcCCChHHHHHHhhhcccHHHHHHHHHhhC--hhhhHHHHhhhhhccccccchhhhhhheeec--CCCc--
Confidence 110000 112344555555555555544321 2221 2222233334446666555543322 2342
Q ss_pred hhHHHHHHHHHhcCCcchHHHHHH
Q 036237 520 GCYVVLSNIYAAAGQWDKVSEVRE 543 (689)
Q Consensus 520 ~~~~~L~~~~~~~g~~~~A~~~~~ 543 (689)
..++-|...+.|.+|.++-+
T Consensus 1110 ----i~l~yf~e~~lw~dalri~k 1129 (1636)
T KOG3616|consen 1110 ----IALNYFIEAELWPDALRIAK 1129 (1636)
T ss_pred ----hHHHHHHHhccChHHHHHHH
Confidence 23455667788888877654
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=98.70 E-value=1.8e-05 Score=82.31 Aligned_cols=257 Identities=14% Similarity=0.020 Sum_probs=148.0
Q ss_pred HHHHHHcCChHHHHHHHHHhccCCCCcChh-hHHHHHHHHHc----ccchhhHHHHHHHHHHhCCcc-chhHHhHHHhhH
Q 036237 288 IAGYELNGRFMEALELLETMLIGDVLPNDA-TLVSALSAVAG----LAVLNKGRWMHSYIVKNGFVV-DGVLGTLLIQMY 361 (689)
Q Consensus 288 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~----~~~~~~a~~i~~~~~~~g~~~-~~~~~~~li~~~ 361 (689)
...+...|++++|.+++++..+. .|+.. .+.. ...+.. .+..+.+.+.... .....| .......+...+
T Consensus 50 a~~~~~~g~~~~A~~~~~~~l~~--~P~~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~a~~~ 124 (355)
T cd05804 50 ALSAWIAGDLPKALALLEQLLDD--YPRDLLALKL-HLGAFGLGDFSGMRDHVARVLPL--WAPENPDYWYLLGMLAFGL 124 (355)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHH-hHHHHHhcccccCchhHHHHHhc--cCcCCCCcHHHHHHHHHHH
Confidence 33456677788888877777654 23332 2221 112222 2333333333332 111122 233444556677
Q ss_pred HhcCCHHHHHHHHHhcCC---CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-CCCH--HHHHHHHHHHhccCcHHH
Q 036237 362 SKCGSIESALTVFRAISK---KKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGM-KPTA--ITFIGVLNACSHAGLVND 435 (689)
Q Consensus 362 ~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~~--~t~~~ll~a~~~~g~~~~ 435 (689)
...|++++|.+.+++..+ .+...+..+...|...|++++|+..+++...... .|+. ..|..+...+...|++++
T Consensus 125 ~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~ 204 (355)
T cd05804 125 EEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEA 204 (355)
T ss_pred HHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHH
Confidence 888888888888887765 3455677788888888888888888888776421 1232 234456677888888888
Q ss_pred HHHHHHHhHHhcCCCCChhHH-H--HHHHHHHhcCCHHHHHH------HHHhC-CCCCCHHHHHHHHHHHHhcCChHHHH
Q 036237 436 GRRYFNMMINDYGIEPTIEHY-G--CLVDILCRTGYLEEAKS------TIESM-PMRPNFVIWMSLLSGARNHGNKDIGE 505 (689)
Q Consensus 436 a~~~~~~~~~~~~~~p~~~~~-~--~li~~~~~~g~~~~A~~------~~~~~-~~~p~~~~~~~ll~~~~~~g~~~~a~ 505 (689)
|..+++.........+..... + .+...+...|....+.+ ..... +.............++...|+.+.|.
T Consensus 205 A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~ 284 (355)
T cd05804 205 ALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALD 284 (355)
T ss_pred HHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHH
Confidence 888888875221111111111 1 23333344443222222 21111 11111122234556677888899999
Q ss_pred HHHHHHhhcC-C--------CCchhHHHHHHHHHhcCCcchHHHHHHHHHhCC
Q 036237 506 YAANNLIKVA-P--------DTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRG 549 (689)
Q Consensus 506 ~~~~~~~~~~-p--------~~~~~~~~L~~~~~~~g~~~~A~~~~~~m~~~~ 549 (689)
..++.+.... . .........+.++...|++++|.+.+......+
T Consensus 285 ~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~a 337 (355)
T cd05804 285 KLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDDL 337 (355)
T ss_pred HHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 8888876521 1 134456677888899999999999999887543
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=98.68 E-value=0.00024 Score=74.17 Aligned_cols=454 Identities=14% Similarity=0.096 Sum_probs=271.0
Q ss_pred HHHhcCCC--chHHHHHHHHHHHhCCCCCchHHHHHhhcccccCCCCHHHHHHHHhcccC--CCChhhHHHHHHHHHhCC
Q 036237 26 NILKFSST--HKETQQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQ--HPSLVLYNLLIKCYVFNQ 101 (689)
Q Consensus 26 ~~l~~c~~--~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~g~~~~A~~~f~~~~~--~~~~~~~~~ll~~~~~~g 101 (689)
.+|+.... ...|......+++ +++-++.+....--.+.. .|+-++|......-.+ ..+-+.|..+.-.+-...
T Consensus 13 ~~lk~yE~kQYkkgLK~~~~iL~-k~~eHgeslAmkGL~L~~--lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK 89 (700)
T KOG1156|consen 13 RALKCYETKQYKKGLKLIKQILK-KFPEHGESLAMKGLTLNC--LGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDK 89 (700)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHH-hCCccchhHHhccchhhc--ccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhh
Confidence 45554332 5667777777777 444444444322222333 6999999988766542 456678988888888889
Q ss_pred CchHHHHHHHHhHhCCCCCCc-ccHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHH
Q 036237 102 RSHEALTLFCDLLDRFLLPDN-FTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVF 180 (689)
Q Consensus 102 ~~~~a~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~ 180 (689)
++++|++.|+..+..+ ||. ..+.-+----++.|+++..........+.. +.....|..+..++.-.|+...|..+.
T Consensus 90 ~Y~eaiKcy~nAl~~~--~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~-~~~ra~w~~~Avs~~L~g~y~~A~~il 166 (700)
T KOG1156|consen 90 KYDEAIKCYRNALKIE--KDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLR-PSQRASWIGFAVAQHLLGEYKMALEIL 166 (700)
T ss_pred hHHHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999998764 443 444444333456778887777777777664 445567888888888999999999998
Q ss_pred hhCCC-----CCeehHHHH------HHHHHhCCChHHHHHHHhhCCCC--Ccch-HHHHHHHHHhCCChHHHHHHHhhcC
Q 036237 181 DAMDD-----KDLVSWNCL------IDGYVKKGEVEVAMKLFDEMPDR--DLFS-WTCLVDGFSKCGKVEIAREIFYRMP 246 (689)
Q Consensus 181 ~~m~~-----~~~~~~~~l------i~~~~~~g~~~~A~~~~~~m~~~--d~~~-~~~li~~~~~~g~~~~A~~~~~~~~ 246 (689)
++..+ ++...+... .....+.|..++|++.+..-... |-.. --.-...+.+.+++++|..++..++
T Consensus 167 ~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll 246 (700)
T KOG1156|consen 167 EEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVDKLAFEETKADLLMKLGQLEEAVKVYRRLL 246 (700)
T ss_pred HHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHH
Confidence 87652 333333322 34566789999999988776542 3333 2345567889999999999999998
Q ss_pred cCCc---chHHHHHHHHHhcCCHHHHH-HHHHhcCCC---ChHHHHHHHHHHHHcCChHHHHHHHHHhccCCCCcChhhH
Q 036237 247 NRNL---VSWNAMINGYMKAGDVDSAC-ELFDDMEIR---DLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATL 319 (689)
Q Consensus 247 ~~~~---~~~~~li~~~~~~g~~~~A~-~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~ 319 (689)
.+++ ..|-.+..++++-.+.-++. .+|....+. ....-..=++......-.+..-+++..+++.|+++--..+
T Consensus 247 ~rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~vf~dl 326 (700)
T KOG1156|consen 247 ERNPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSVFKDL 326 (700)
T ss_pred hhCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCchhhhh
Confidence 7543 33444555555444444444 555554422 1110000011111112233344566667777765533332
Q ss_pred HHHHHHHHcccchhhHHHHHHHHHHhCCccchhHHhHHHhhHHhcCCHHHHHHHHH--hcCCCChhhHH--HHHHHHHHc
Q 036237 320 VSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFR--AISKKKVGHWT--AMIVGLGMH 395 (689)
Q Consensus 320 ~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~--~~~~~~~~~~~--~li~~~~~~ 395 (689)
.++ +-.. .... +. ..++..|...-.-..+....+ +...|....|+ -++..|-..
T Consensus 327 ~SL---yk~p---~k~~-~l---------------e~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~ 384 (700)
T KOG1156|consen 327 RSL---YKDP---EKVA-FL---------------EKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKL 384 (700)
T ss_pred HHH---Hhch---hHhH-HH---------------HHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHc
Confidence 222 1111 1110 11 112222211100000000000 01234445555 467788889
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHH
Q 036237 396 GMATQALDLFNKMCRMGMKPTAI-TFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKS 474 (689)
Q Consensus 396 g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 474 (689)
|+++.|+..++.... -.|+.+ -|..-...+.+.|++++|..++++..+ --.||...-.--+.-..++.+.++|.+
T Consensus 385 g~~~~A~~yId~AId--HTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~e--lD~aDR~INsKcAKYmLrAn~i~eA~~ 460 (700)
T KOG1156|consen 385 GDYEVALEYIDLAID--HTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQE--LDTADRAINSKCAKYMLRANEIEEAEE 460 (700)
T ss_pred ccHHHHHHHHHHHhc--cCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHh--ccchhHHHHHHHHHHHHHccccHHHHH
Confidence 999999999999886 467755 565666788999999999999998873 223444433355667788999999998
Q ss_pred HHHhCCCCC-C--------HHHHHHH--HHHHHhcCChHHHHHHHHHH
Q 036237 475 TIESMPMRP-N--------FVIWMSL--LSGARNHGNKDIGEYAANNL 511 (689)
Q Consensus 475 ~~~~~~~~p-~--------~~~~~~l--l~~~~~~g~~~~a~~~~~~~ 511 (689)
+.....-.. + .-.|-.+ ..+|.++|++.+|.+-+..+
T Consensus 461 ~~skFTr~~~~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i 508 (700)
T KOG1156|consen 461 VLSKFTREGFGAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHEI 508 (700)
T ss_pred HHHHhhhcccchhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhhH
Confidence 877653111 1 1234433 34577888888777665544
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.68 E-value=4.8e-05 Score=77.59 Aligned_cols=414 Identities=15% Similarity=0.081 Sum_probs=222.3
Q ss_pred CCCHHHHHHHHhcccC--CCChhhHHHHHHHHHhCCCchHHHHHHHHhHhCCCCCC-cccHHHHHHHHHhcCChHHHHHH
Q 036237 68 INNLHYARSIFDRILQ--HPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPD-NFTLPCVIKGAARLGAIKEGKQI 144 (689)
Q Consensus 68 ~g~~~~A~~~f~~~~~--~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~~~~~~a~~~ 144 (689)
.|+++.|...|-+... ++|-+.|..-..+|+..|++++|++--.+-++. .|+ .--|...-.++...|++++|..-
T Consensus 15 ~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l--~p~w~kgy~r~Gaa~~~lg~~~eA~~a 92 (539)
T KOG0548|consen 15 SGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRL--NPDWAKGYSRKGAALFGLGDYEEAILA 92 (539)
T ss_pred cccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhc--CCchhhHHHHhHHHHHhcccHHHHHHH
Confidence 6889999988876543 567778888888899999988888776666553 444 34577777788888899999888
Q ss_pred HHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhhCCCCCeehHHHH-----HHHHHhCCChHHHHHHHhhCCCCCc
Q 036237 145 HGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCL-----IDGYVKKGEVEVAMKLFDEMPDRDL 219 (689)
Q Consensus 145 ~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~l-----i~~~~~~g~~~~A~~~~~~m~~~d~ 219 (689)
|..-++.. +.+...++.|.+++.- + ..+.+.|. ++..|..+ .+.+...-.+..-++.+..-+. +.
T Consensus 93 y~~GL~~d-~~n~~L~~gl~~a~~~--~-~~~~~~~~-----~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~-~l 162 (539)
T KOG0548|consen 93 YSEGLEKD-PSNKQLKTGLAQAYLE--D-YAADQLFT-----KPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPT-SL 162 (539)
T ss_pred HHHHhhcC-CchHHHHHhHHHhhhH--H-HHhhhhcc-----CcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcH-hh
Confidence 88877765 5566777888877711 1 11111111 11112111 1112222112111111111110 00
Q ss_pred ch---HHHHHHHHHhCCChHHH-HH-----HHhhcCcC----------------------CcchHHHHHHHHHhcCCHHH
Q 036237 220 FS---WTCLVDGFSKCGKVEIA-RE-----IFYRMPNR----------------------NLVSWNAMINGYMKAGDVDS 268 (689)
Q Consensus 220 ~~---~~~li~~~~~~g~~~~A-~~-----~~~~~~~~----------------------~~~~~~~li~~~~~~g~~~~ 268 (689)
-. ...++.+.......+.- .. ....+..| ...-...+.++.-+..+++.
T Consensus 163 ~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~ 242 (539)
T KOG0548|consen 163 KLYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFET 242 (539)
T ss_pred hcccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHH
Confidence 00 00111111100000000 00 00000000 02223344455555555555
Q ss_pred HHHHHHhcCCC--ChHHHHHHHHHHHHcCChHHHHHHHHHhccCCCCcChhhHHHHHHHHHcccchhhHHHHHHHHHHhC
Q 036237 269 ACELFDDMEIR--DLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNG 346 (689)
Q Consensus 269 A~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g 346 (689)
|.+-++..... ++.-++....+|...|.+.+....-....+.|.. ...-|+.+-
T Consensus 243 a~q~y~~a~el~~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIa----------------------- 298 (539)
T KOG0548|consen 243 AIQHYAKALELATDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIA----------------------- 298 (539)
T ss_pred HHHHHHHHHhHhhhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHH-----------------------
Confidence 55555444322 2223444445555555555554444443322210 000000000
Q ss_pred CccchhHHhHHHhhHHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHH
Q 036237 347 FVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAI-TFIGVLN 425 (689)
Q Consensus 347 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~ 425 (689)
.....+..+|.+.++++.|+..|.+...+... -....+....++++...+...- +.|+.. -...-.+
T Consensus 299 -----k~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt-----~~~ls~lk~~Ek~~k~~e~~a~--~~pe~A~e~r~kGn 366 (539)
T KOG0548|consen 299 -----KALARLGNAYTKREDYEGAIKYYQKALTEHRT-----PDLLSKLKEAEKALKEAERKAY--INPEKAEEEREKGN 366 (539)
T ss_pred -----HHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcC-----HHHHHHHHHHHHHHHHHHHHHh--hChhHHHHHHHHHH
Confidence 01111344677778888888888775432111 1122233445566655555443 344432 1222356
Q ss_pred HHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCH-HHHHHHHHHHHhcCChHH
Q 036237 426 ACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESM-PMRPNF-VIWMSLLSGARNHGNKDI 503 (689)
Q Consensus 426 a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~-~~~~~ll~~~~~~g~~~~ 503 (689)
.+.+.|++..|...|.++++. -+-|...|..-.-+|.+.|.+.+|++-.+.. ...|+. ..|.--..++....+++.
T Consensus 367 e~Fk~gdy~~Av~~YteAIkr--~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydk 444 (539)
T KOG0548|consen 367 EAFKKGDYPEAVKHYTEAIKR--DPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDK 444 (539)
T ss_pred HHHhccCHHHHHHHHHHHHhc--CCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHH
Confidence 677889999999999998842 2445788888888999999988888776654 344543 355555666666678999
Q ss_pred HHHHHHHHhhcCCCCchhHHHHHHHHHh
Q 036237 504 GEYAANNLIKVAPDTIGCYVVLSNIYAA 531 (689)
Q Consensus 504 a~~~~~~~~~~~p~~~~~~~~L~~~~~~ 531 (689)
|...|++.++.+|++......+..++..
T Consensus 445 Aleay~eale~dp~~~e~~~~~~rc~~a 472 (539)
T KOG0548|consen 445 ALEAYQEALELDPSNAEAIDGYRRCVEA 472 (539)
T ss_pred HHHHHHHHHhcCchhHHHHHHHHHHHHH
Confidence 9999999999999887776666666654
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=98.68 E-value=1.9e-05 Score=83.97 Aligned_cols=125 Identities=17% Similarity=0.216 Sum_probs=96.6
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHH
Q 036237 384 HWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAI-TFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPT-IEHYGCLVD 461 (689)
Q Consensus 384 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~ 461 (689)
++.-+...|-..|++++|++.+++.++ ..|+.+ .|..-...+-+.|++++|.+.++..+ .+.+. -..-+-.+.
T Consensus 196 ~~~~lAqhyd~~g~~~~Al~~Id~aI~--htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar---~LD~~DRyiNsK~aK 270 (517)
T PF12569_consen 196 TLYFLAQHYDYLGDYEKALEYIDKAIE--HTPTLVELYMTKARILKHAGDLKEAAEAMDEAR---ELDLADRYINSKCAK 270 (517)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHh--cCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH---hCChhhHHHHHHHHH
Confidence 345667788899999999999999998 467744 77788889999999999999999988 34454 344455677
Q ss_pred HHHhcCCHHHHHHHHHhCCC---CC--C----HHHH--HHHHHHHHhcCChHHHHHHHHHHhh
Q 036237 462 ILCRTGYLEEAKSTIESMPM---RP--N----FVIW--MSLLSGARNHGNKDIGEYAANNLIK 513 (689)
Q Consensus 462 ~~~~~g~~~~A~~~~~~~~~---~p--~----~~~~--~~ll~~~~~~g~~~~a~~~~~~~~~ 513 (689)
.+.|+|+.++|.+++..... .| | ...| .....+|.+.|++..|++-+..+.+
T Consensus 271 y~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k 333 (517)
T PF12569_consen 271 YLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLK 333 (517)
T ss_pred HHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 88899999999999887631 12 1 1234 4456778999999999988877765
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.67 E-value=1.6e-05 Score=80.91 Aligned_cols=216 Identities=11% Similarity=0.024 Sum_probs=153.2
Q ss_pred HHHHHHHHHcccchhhHHHHHHHHHHhCCccchhHHhHHHhhHHhcCCHHHHHHHHHhcCCCChh----------hHHHH
Q 036237 319 LVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVG----------HWTAM 388 (689)
Q Consensus 319 ~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~----------~~~~l 388 (689)
...+.++..+..+++.+.+-+...+... .+..-++....+|...|.+.+....-+...+.+.. ....+
T Consensus 227 ek~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~ 304 (539)
T KOG0548|consen 227 EKELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARL 304 (539)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHh
Confidence 3445566666677777777777777665 56666667777788888877776665554442211 12224
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCCh-hHHHHHHHHHHhcC
Q 036237 389 IVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTI-EHYGCLVDILCRTG 467 (689)
Q Consensus 389 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~-~~~~~li~~~~~~g 467 (689)
..+|.+.++++.|+..|.+....-..||..+ +....+++....+... -+.|.. .-...=...+.+.|
T Consensus 305 g~a~~k~~~~~~ai~~~~kaLte~Rt~~~ls---------~lk~~Ek~~k~~e~~a---~~~pe~A~e~r~kGne~Fk~g 372 (539)
T KOG0548|consen 305 GNAYTKREDYEGAIKYYQKALTEHRTPDLLS---------KLKEAEKALKEAERKA---YINPEKAEEEREKGNEAFKKG 372 (539)
T ss_pred hhhhhhHHhHHHHHHHHHHHhhhhcCHHHHH---------HHHHHHHHHHHHHHHH---hhChhHHHHHHHHHHHHHhcc
Confidence 4567777888999999988766544444322 2233445554444433 344543 11112266788999
Q ss_pred CHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCcchHHHHHHHH
Q 036237 468 YLEEAKSTIESM-PMRP-NFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMM 545 (689)
Q Consensus 468 ~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~~~~~g~~~~A~~~~~~m 545 (689)
++.+|...+.++ ...| |...|.....+|.+.|++..|+.-.+..++++|+.+..|..=+-++....+|++|.+.+.+-
T Consensus 373 dy~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~ea 452 (539)
T KOG0548|consen 373 DYPEAVKHYTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEA 452 (539)
T ss_pred CHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999987 3335 67799999999999999999999999999999999999999999999999999999999876
Q ss_pred HhC
Q 036237 546 KKR 548 (689)
Q Consensus 546 ~~~ 548 (689)
.+.
T Consensus 453 le~ 455 (539)
T KOG0548|consen 453 LEL 455 (539)
T ss_pred Hhc
Confidence 653
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.65 E-value=1.6e-05 Score=86.21 Aligned_cols=439 Identities=13% Similarity=0.041 Sum_probs=236.1
Q ss_pred hHHHHHHHHHhCCCchHHHHHHHHhHhCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHHhCC-CCchhHHHHHHHHH
Q 036237 89 LYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGF-GFDKFVLSSLVSMY 167 (689)
Q Consensus 89 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~-~~~~~~~~~li~~~ 167 (689)
.|..|..-|...-+...|...|+...+.. ..|......+...+++..+++.|..+.-..-+... ..-..-|....-.|
T Consensus 494 af~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~yy 572 (1238)
T KOG1127|consen 494 AFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPYY 572 (1238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhccccc
Confidence 46666666665556666666666665542 12444556666666666777766666222111110 00111222233445
Q ss_pred HhcCChHHHHHHHhhCCC---CCeehHHHHHHHHHhCCChHHHHHHHhhCCCCCcc-hHHH--HHHHHHhCCChHHHHHH
Q 036237 168 AKFGEIDLGRRVFDAMDD---KDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDRDLF-SWTC--LVDGFSKCGKVEIAREI 241 (689)
Q Consensus 168 ~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~d~~-~~~~--li~~~~~~g~~~~A~~~ 241 (689)
.+.++...|..-|+.... .|...|..+..+|.+.|++..|+++|++...-++. +|.. ....-+..|.+.+|+..
T Consensus 573 Lea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd~GkYkeald~ 652 (1238)
T KOG1127|consen 573 LEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVMECDNGKYKEALDA 652 (1238)
T ss_pred cCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHHHhhhHHHHHHH
Confidence 566666666666665443 35566777777777777777777777666542222 2221 22234556777777776
Q ss_pred HhhcCcC---C-------cchHHHHHHHHHhcCCHHHHHHHHHhcCC-----------CChHHHHHHHHHHHHcCChHHH
Q 036237 242 FYRMPNR---N-------LVSWNAMINGYMKAGDVDSACELFDDMEI-----------RDLITWNSMIAGYELNGRFMEA 300 (689)
Q Consensus 242 ~~~~~~~---~-------~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----------~~~~~~~~li~~~~~~g~~~~A 300 (689)
+...... - ..++-.+...+.-.|-..+|...|++-.+ .+...|-.+ ..|
T Consensus 653 l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~a----------sda 722 (1238)
T KOG1127|consen 653 LGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVA----------SDA 722 (1238)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHH----------hHH
Confidence 6665431 0 11111111222222222233333322211 011122211 223
Q ss_pred HHHHHHhccCCCCcChhhHHHHHHHHHcccch---hh-HHHHHHHHHHhCCccchhHHhHHHhhHHh----cC----CHH
Q 036237 301 LELLETMLIGDVLPNDATLVSALSAVAGLAVL---NK-GRWMHSYIVKNGFVVDGVLGTLLIQMYSK----CG----SIE 368 (689)
Q Consensus 301 ~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~---~~-a~~i~~~~~~~g~~~~~~~~~~li~~~~~----~g----~~~ 368 (689)
..+|-+... + .|+......+..-.-..+.. +- ...+-.......+..+...|..|+.-|.+ +| +..
T Consensus 723 c~~f~q~e~-~-~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyNLGinylr~f~~l~et~~~~~ 800 (1238)
T KOG1127|consen 723 CYIFSQEEP-S-IVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPWYNLGINYLRYFLLLGETMKDAC 800 (1238)
T ss_pred HHHHHHhcc-c-chHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchHHHHhHHHHHHHHHcCCcchhHH
Confidence 334433321 1 22222222222212222222 10 00010111111122233344444443333 22 223
Q ss_pred HHHHHHHhcCC---CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHH
Q 036237 369 SALTVFRAISK---KKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMIN 445 (689)
Q Consensus 369 ~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 445 (689)
.|...+....+ .+...||+|.-. ...|++.-|...|-+-.... +-+..+|..+.-.|....+++.|...|...+
T Consensus 801 ~Ai~c~KkaV~L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~se-p~~~~~W~NlgvL~l~n~d~E~A~~af~~~q- 877 (1238)
T KOG1127|consen 801 TAIRCCKKAVSLCANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSE-PTCHCQWLNLGVLVLENQDFEHAEPAFSSVQ- 877 (1238)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHh-hccchhhhhhhhhhhhhhcc-ccchhheeccceeEEecccHHHhhHHHHhhh-
Confidence 56666665443 677889988776 66688888888777766532 3346688888888899999999999999887
Q ss_pred hcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhC-------CCCCCHHHHHHHHHHHHhcCChHHHHH----------H
Q 036237 446 DYGIEPT-IEHYGCLVDILCRTGYLEEAKSTIESM-------PMRPNFVIWMSLLSGARNHGNKDIGEY----------A 507 (689)
Q Consensus 446 ~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~-------~~~p~~~~~~~ll~~~~~~g~~~~a~~----------~ 507 (689)
.+.|+ ...|--..-.....|+.-++..+|..- +.-|+..-|.....-...+|+.+.-+. .
T Consensus 878 --SLdP~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki~sAs~a 955 (1238)
T KOG1127|consen 878 --SLDPLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTARKISSASLA 955 (1238)
T ss_pred --hcCchhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHHhhhhhhhHHH
Confidence 56665 455544444555778888888888752 223566666655555566666665443 3
Q ss_pred HHHHhhcCCCCchhHHHHHHHHHhcCCcchHHHHHHHH
Q 036237 508 ANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMM 545 (689)
Q Consensus 508 ~~~~~~~~p~~~~~~~~L~~~~~~~g~~~~A~~~~~~m 545 (689)
.++.+...|+...+|...+....+.+.+++|.++..+.
T Consensus 956 l~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~Rl 993 (1238)
T KOG1127|consen 956 LSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRL 993 (1238)
T ss_pred HHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 44556678998889999999999999998888877665
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.63 E-value=0.00067 Score=72.50 Aligned_cols=199 Identities=15% Similarity=0.130 Sum_probs=112.8
Q ss_pred CchHHHHHhhcccccCCCCHHHHHHHHhcccC------------CCChhhHHHHHHH-HHhCCCchHHHHHHHHhHhCCC
Q 036237 52 HSGISSRLLSLYVDPHINNLHYARSIFDRILQ------------HPSLVLYNLLIKC-YVFNQRSHEALTLFCDLLDRFL 118 (689)
Q Consensus 52 ~~~~~~~ll~~~~~~~~g~~~~A~~~f~~~~~------------~~~~~~~~~ll~~-~~~~g~~~~a~~~~~~m~~~g~ 118 (689)
+..+|..+.+|+.+ ..+++-|.-.+-.|.. .++ . -.+-..+ -.+.|..++|..+|++-.+
T Consensus 756 S~~vW~nmA~McVk--T~RLDVAkVClGhm~~aRgaRAlR~a~q~~~-e-~eakvAvLAieLgMlEeA~~lYr~ckR--- 828 (1416)
T KOG3617|consen 756 SDSVWDNMASMCVK--TRRLDVAKVCLGHMKNARGARALRRAQQNGE-E-DEAKVAVLAIELGMLEEALILYRQCKR--- 828 (1416)
T ss_pred hhHHHHHHHHHhhh--hccccHHHHhhhhhhhhhhHHHHHHHHhCCc-c-hhhHHHHHHHHHhhHHHHHHHHHHHHH---
Confidence 45789999999999 8888888777776653 222 1 1112222 2456888999999988765
Q ss_pred CCCcccHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhhCCC-------------
Q 036237 119 LPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDD------------- 185 (689)
Q Consensus 119 ~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~------------- 185 (689)
|..|=+.|-..|.+++|.++-+.--+-.+. .||..-..-+-..+|.+.|++.|++...
T Consensus 829 ------~DLlNKlyQs~g~w~eA~eiAE~~DRiHLr---~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p 899 (1416)
T KOG3617|consen 829 ------YDLLNKLYQSQGMWSEAFEIAETKDRIHLR---NTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYP 899 (1416)
T ss_pred ------HHHHHHHHHhcccHHHHHHHHhhccceehh---hhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhCh
Confidence 344445566778888888876543222221 2444444445556777777777775431
Q ss_pred ----------CCeehHHHHHHHHHhCCChHHHHHHHhhCCCCCcchHHHHHHHHHhCCChHHHHHHHhhcCcCCcchHHH
Q 036237 186 ----------KDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDRDLFSWTCLVDGFSKCGKVEIAREIFYRMPNRNLVSWNA 255 (689)
Q Consensus 186 ----------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 255 (689)
+|...|.-...-+-..|..+.|+.+|...++ |-++++..|-.|+.++|-++-++- .|......
T Consensus 900 ~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D-----~fs~VrI~C~qGk~~kAa~iA~es--gd~AAcYh 972 (1416)
T KOG3617|consen 900 KQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD-----YFSMVRIKCIQGKTDKAARIAEES--GDKAACYH 972 (1416)
T ss_pred HHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh-----hhhheeeEeeccCchHHHHHHHhc--ccHHHHHH
Confidence 2444455555555556888888888876642 333344444444444444443322 12223333
Q ss_pred HHHHHHhcCCHHHHHHHH
Q 036237 256 MINGYMKAGDVDSACELF 273 (689)
Q Consensus 256 li~~~~~~g~~~~A~~~~ 273 (689)
|.++|-..|++.+|..+|
T Consensus 973 laR~YEn~g~v~~Av~Ff 990 (1416)
T KOG3617|consen 973 LARMYENDGDVVKAVKFF 990 (1416)
T ss_pred HHHHhhhhHHHHHHHHHH
Confidence 344444444444444443
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.63 E-value=0.0016 Score=71.21 Aligned_cols=209 Identities=15% Similarity=0.198 Sum_probs=135.2
Q ss_pred CChHHHHHHHhhCCCCCeehHHHHHHHHHhCCChHHHHHHHhhCCCCCcchHHHHHHHHHhCCChHHHHHHHhhcCc--C
Q 036237 171 GEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDRDLFSWTCLVDGFSKCGKVEIAREIFYRMPN--R 248 (689)
Q Consensus 171 g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~ 248 (689)
+.++.|.+.-++..+| ..|..+..+-.+.|.+.+|++-|-+. .|+..|..++..+.+.|.+++-.+.+..+.+ .
T Consensus 1089 ~~ldRA~efAe~~n~p--~vWsqlakAQL~~~~v~dAieSyika--dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~ 1164 (1666)
T KOG0985|consen 1089 GSLDRAYEFAERCNEP--AVWSQLAKAQLQGGLVKDAIESYIKA--DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVR 1164 (1666)
T ss_pred hhHHHHHHHHHhhCCh--HHHHHHHHHHHhcCchHHHHHHHHhc--CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhc
Confidence 5566666666655544 56999999999999999999988654 4667899999999999999999998877765 4
Q ss_pred CcchHHHHHHHHHhcCCHHHHHHHHHhcCC-----------------------CChHHHHHHHHHHHHcCChHHHHHHHH
Q 036237 249 NLVSWNAMINGYMKAGDVDSACELFDDMEI-----------------------RDLITWNSMIAGYELNGRFMEALELLE 305 (689)
Q Consensus 249 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----------------------~~~~~~~~li~~~~~~g~~~~A~~~~~ 305 (689)
.+.+-+.||-+|++.+++.+-+++...-.. .++..|..|...+...|++..|.+.-+
T Consensus 1165 E~~id~eLi~AyAkt~rl~elE~fi~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~vSN~a~La~TLV~LgeyQ~AVD~aR 1244 (1666)
T KOG0985|consen 1165 EPYIDSELIFAYAKTNRLTELEEFIAGPNVANIQQVGDRCFEEKMYEAAKLLYSNVSNFAKLASTLVYLGEYQGAVDAAR 1244 (1666)
T ss_pred CccchHHHHHHHHHhchHHHHHHHhcCCCchhHHHHhHHHhhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhh
Confidence 467778999999999999887776543210 033345555555666666666655544
Q ss_pred HhccCCCCcChhhHHHHHHHHHcccchhhHHHHHHHHHHhCCccchhHHhHHHhhHHhcCCHHHHHHHHHhcCC---CCh
Q 036237 306 TMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISK---KKV 382 (689)
Q Consensus 306 ~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~ 382 (689)
+. .+..||..+-.+|...+.+..|. +-..++.....-..-|+.-|-..|-+++-+.+++.... ...
T Consensus 1245 KA------ns~ktWK~VcfaCvd~~EFrlAQ-----iCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLERAHM 1313 (1666)
T KOG0985|consen 1245 KA------NSTKTWKEVCFACVDKEEFRLAQ-----ICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLERAHM 1313 (1666)
T ss_pred hc------cchhHHHHHHHHHhchhhhhHHH-----hcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchhHHHH
Confidence 33 24456666666666555444332 11111222233334466666667777776666665432 234
Q ss_pred hhHHHHHHHHHH
Q 036237 383 GHWTAMIVGLGM 394 (689)
Q Consensus 383 ~~~~~li~~~~~ 394 (689)
..|+-|.-.|++
T Consensus 1314 gmfTELaiLYsk 1325 (1666)
T KOG0985|consen 1314 GMFTELAILYSK 1325 (1666)
T ss_pred HHHHHHHHHHHh
Confidence 455555555554
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.58 E-value=4.6e-06 Score=81.09 Aligned_cols=179 Identities=12% Similarity=0.046 Sum_probs=114.6
Q ss_pred chhHHhHHHhhHHhcCCHHHHHHHHHhcCC--C-Ch---hhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH----H
Q 036237 350 DGVLGTLLIQMYSKCGSIESALTVFRAISK--K-KV---GHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAI----T 419 (689)
Q Consensus 350 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~---~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~----t 419 (689)
....+..+...|.+.|++++|...|+++.. | +. ..|..+..+|.+.|++++|+..++++.+. .|+.. +
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a 109 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRL--HPNHPDADYA 109 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCCchHHH
Confidence 345556666677777777777777776654 2 11 35566777777777777777777777763 33322 3
Q ss_pred HHHHHHHHhcc--------CcHHHHHHHHHHhHHhcCCCCCh-hHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHH
Q 036237 420 FIGVLNACSHA--------GLVNDGRRYFNMMINDYGIEPTI-EHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMS 490 (689)
Q Consensus 420 ~~~ll~a~~~~--------g~~~~a~~~~~~~~~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ 490 (689)
+..+..++... |+.++|.+.|+.+... .|+. ..+..+... +...... ......
T Consensus 110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~a~~~~----~~~~~~~-----------~~~~~~ 171 (235)
T TIGR03302 110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR---YPNSEYAPDAKKRM----DYLRNRL-----------AGKELY 171 (235)
T ss_pred HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH---CCCChhHHHHHHHH----HHHHHHH-----------HHHHHH
Confidence 44444444433 5677777777777632 3332 222211111 0011000 001124
Q ss_pred HHHHHHhcCChHHHHHHHHHHhhcCCCC---chhHHHHHHHHHhcCCcchHHHHHHHHHhC
Q 036237 491 LLSGARNHGNKDIGEYAANNLIKVAPDT---IGCYVVLSNIYAAAGQWDKVSEVREMMKKR 548 (689)
Q Consensus 491 ll~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~L~~~~~~~g~~~~A~~~~~~m~~~ 548 (689)
+...+...|+++.|+..++++++..|++ +..+..++.+|.+.|++++|..+++.+...
T Consensus 172 ~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 172 VARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 5566888999999999999999987754 468899999999999999999999988754
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.57 E-value=4.8e-05 Score=72.99 Aligned_cols=307 Identities=11% Similarity=0.039 Sum_probs=200.6
Q ss_pred chhHHHHHHHHHHhcCChHHHHHHHhhCCCCCeehHHHHH---HHHHhCCChHHHHHHHhhCCCCCcchHHHH---HHHH
Q 036237 156 DKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLI---DGYVKKGEVEVAMKLFDEMPDRDLFSWTCL---VDGF 229 (689)
Q Consensus 156 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li---~~~~~~g~~~~A~~~~~~m~~~d~~~~~~l---i~~~ 229 (689)
++.-.--|...+...|++.+|+.-|....+-|+..|-++. ..|...|+...|+.-|.+..+--+..+.+- ...+
T Consensus 37 dvekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vl 116 (504)
T KOG0624|consen 37 DVEKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVL 116 (504)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhh
Confidence 4444456777788899999999999999999999888875 478888999999998888876322222222 3357
Q ss_pred HhCCChHHHHHHHhhcCcCCcchHHHHHHHHHhcCCHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHhcc
Q 036237 230 SKCGKVEIAREIFYRMPNRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLI 309 (689)
Q Consensus 230 ~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 309 (689)
.+.|.++.|..-|+.+++.++.- +....++.+.--.++-+. .-..+..+...|+...|++....+++
T Consensus 117 lK~Gele~A~~DF~~vl~~~~s~-~~~~eaqskl~~~~e~~~------------l~~ql~s~~~~GD~~~ai~~i~~llE 183 (504)
T KOG0624|consen 117 LKQGELEQAEADFDQVLQHEPSN-GLVLEAQSKLALIQEHWV------------LVQQLKSASGSGDCQNAIEMITHLLE 183 (504)
T ss_pred hhcccHHHHHHHHHHHHhcCCCc-chhHHHHHHHHhHHHHHH------------HHHHHHHHhcCCchhhHHHHHHHHHh
Confidence 89999999999999988744311 111122222211111111 11233344556777777777777665
Q ss_pred CCCCcChhhHHHHHHHHHcccchhhHHHHHHHHHHhCCccchhHHhHHHhhHHhcCCHHHHHHHHHhcCCCChh------
Q 036237 310 GDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVG------ 383 (689)
Q Consensus 310 ~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~------ 383 (689)
-. +.|...+..-..+|...|.+..|+.-+..+.+..-. ++...--+-..+...|+.+.++...++..+-|+.
T Consensus 184 i~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~D-nTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK~Cf~ 261 (504)
T KOG0624|consen 184 IQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQD-NTEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHKLCFP 261 (504)
T ss_pred cC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccc-chHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchhhHHH
Confidence 32 234445555556666677777766666655554422 3334444566677778888777777777653221
Q ss_pred hHHHH---------HHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHH---HHHHHHHhccCcHHHHHHHHHHhHHhcCCCC
Q 036237 384 HWTAM---------IVGLGMHGMATQALDLFNKMCRMGMKPTAITF---IGVLNACSHAGLVNDGRRYFNMMINDYGIEP 451 (689)
Q Consensus 384 ~~~~l---------i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~---~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p 451 (689)
.|-.+ +......+++.++++-.+...+.......++| ..+-.++...|.+.+|++...+.. .+.|
T Consensus 262 ~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL---~~d~ 338 (504)
T KOG0624|consen 262 FYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVL---DIDP 338 (504)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHH---hcCc
Confidence 12111 22345678899999988888774322223333 344456677899999999999888 5677
Q ss_pred C-hhHHHHHHHHHHhcCCHHHHHHHHHhCC
Q 036237 452 T-IEHYGCLVDILCRTGYLEEAKSTIESMP 480 (689)
Q Consensus 452 ~-~~~~~~li~~~~~~g~~~~A~~~~~~~~ 480 (689)
+ +.++.--.++|.-...+++|+.-|+...
T Consensus 339 ~dv~~l~dRAeA~l~dE~YD~AI~dye~A~ 368 (504)
T KOG0624|consen 339 DDVQVLCDRAEAYLGDEMYDDAIHDYEKAL 368 (504)
T ss_pred hHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 7 7888888889999999999999998873
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.57 E-value=8.5e-08 Score=60.40 Aligned_cols=33 Identities=30% Similarity=0.486 Sum_probs=27.5
Q ss_pred CCCCchhHHHHHHHHHHhcCChHHHHHHHhhCC
Q 036237 152 GFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMD 184 (689)
Q Consensus 152 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 184 (689)
|+.||..+||+||++|++.|++++|.++|++|+
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 678888888888888888888888888888874
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.56 E-value=6.4e-05 Score=70.76 Aligned_cols=298 Identities=11% Similarity=0.059 Sum_probs=156.5
Q ss_pred hCCChHHHHHHHhhcCc-CCcchHHHHHHHHHhcCCHHHHHHHHHhcCC----CChHHHHHHHHHHHHcCChHHHHHHHH
Q 036237 231 KCGKVEIAREIFYRMPN-RNLVSWNAMINGYMKAGDVDSACELFDDMEI----RDLITWNSMIAGYELNGRFMEALELLE 305 (689)
Q Consensus 231 ~~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~ 305 (689)
+.+++..+..+.++... .+..+.+...-...+.|+.+.|.+-|....+ .....||.-+. ..+.|++..|+++..
T Consensus 124 se~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpllAYniALa-Hy~~~qyasALk~iS 202 (459)
T KOG4340|consen 124 SEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLALA-HYSSRQYASALKHIS 202 (459)
T ss_pred ccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHHHHhhcCCCchhHHHHHHH-HHhhhhHHHHHHHHH
Confidence 34555555555555552 3344444444455566666666666665543 23456665443 446678888888888
Q ss_pred HhccCCCCcChhhH----HHHHHHHHcccchhhHHHHHHHHHHhCCccchhHHhHHHhhHHhcCCHHHHHHHHHhcCCC-
Q 036237 306 TMLIGDVLPNDATL----VSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKK- 380 (689)
Q Consensus 306 ~m~~~g~~p~~~t~----~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~- 380 (689)
++.+.|++.-+..- ...+. ...+..-..++... -+..+|.-...+.+.|+.+.|.+.+-.|+.+
T Consensus 203 EIieRG~r~HPElgIGm~tegiD----vrsvgNt~~lh~Sa-------l~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRa 271 (459)
T KOG4340|consen 203 EIIERGIRQHPELGIGMTTEGID----VRSVGNTLVLHQSA-------LVEAFNLKAAIEYQLRNYEAAQEALTDMPPRA 271 (459)
T ss_pred HHHHhhhhcCCccCccceeccCc----hhcccchHHHHHHH-------HHHHhhhhhhhhhhcccHHHHHHHhhcCCCcc
Confidence 88777654221100 00000 00000000111100 0122333344567889999999999999864
Q ss_pred ----ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHH
Q 036237 381 ----KVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHY 456 (689)
Q Consensus 381 ----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~ 456 (689)
|++|...+.-.= ..+++.+..+-+.-+.+... -...||..++-.|++..-++-|-.++.+-....-.-.+...|
T Consensus 272 E~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~nP-fP~ETFANlLllyCKNeyf~lAADvLAEn~~lTyk~L~~Yly 349 (459)
T KOG4340|consen 272 EEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQNP-FPPETFANLLLLYCKNEYFDLAADVLAENAHLTYKFLTPYLY 349 (459)
T ss_pred cccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcCC-CChHHHHHHHHHHhhhHHHhHHHHHHhhCcchhHHHhhHHHH
Confidence 667665543322 24555555555555555322 235699999999999999998888775432100001123333
Q ss_pred HHHHHHHH-hcCCHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCChH----HHHHHHHHHhhcCCCCchhHHHHHHHH
Q 036237 457 GCLVDILC-RTGYLEEAKSTIESMPMRPN--FVIWMSLLSGARNHGNKD----IGEYAANNLIKVAPDTIGCYVVLSNIY 529 (689)
Q Consensus 457 ~~li~~~~-~~g~~~~A~~~~~~~~~~p~--~~~~~~ll~~~~~~g~~~----~a~~~~~~~~~~~p~~~~~~~~L~~~~ 529 (689)
+ |++++. ..-..++|++-++.+...-. ......-+.- .++.+-+ .++.-++..+++.- .+...-++.|
T Consensus 350 ~-LLdaLIt~qT~pEea~KKL~~La~~l~~kLRklAi~vQe-~r~~~dd~a~R~ai~~Yd~~LE~YL---PVlMa~Akiy 424 (459)
T KOG4340|consen 350 D-LLDALITCQTAPEEAFKKLDGLAGMLTEKLRKLAIQVQE-ARHNRDDEAIRKAVNEYDETLEKYL---PVLMAQAKIY 424 (459)
T ss_pred H-HHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhcccHHHHHHHHHHHHHHHHHHH---HHHHHHHHhh
Confidence 3 344443 34466777766655420000 0000000111 1222222 23334444554321 2566778889
Q ss_pred HhcCCcchHHHHHHHHHh
Q 036237 530 AAAGQWDKVSEVREMMKK 547 (689)
Q Consensus 530 ~~~g~~~~A~~~~~~m~~ 547 (689)
.+..++..+.++|..-.+
T Consensus 425 W~~~Dy~~vEk~Fr~Sve 442 (459)
T KOG4340|consen 425 WNLEDYPMVEKIFRKSVE 442 (459)
T ss_pred ccccccHHHHHHHHHHHh
Confidence 999999999999987654
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.51 E-value=3e-05 Score=72.89 Aligned_cols=300 Identities=15% Similarity=0.107 Sum_probs=166.5
Q ss_pred HHHHHHHHHhCCChHHHHHHHhhcCcCC---cchHHHHHHHHHhcCCHHHHHHHHHhcCCC--ChHHHHH-HHHHHHHcC
Q 036237 222 WTCLVDGFSKCGKVEIAREIFYRMPNRN---LVSWNAMINGYMKAGDVDSACELFDDMEIR--DLITWNS-MIAGYELNG 295 (689)
Q Consensus 222 ~~~li~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~-li~~~~~~g 295 (689)
+++++..+.+..+++.|++++..-.+.+ ....+.|...|-...++..|-..++++... ...-|.. -...+-+.+
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~ 92 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKAC 92 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhc
Confidence 5566666677777777877776665533 344556667777777777777777776542 2222221 134455667
Q ss_pred ChHHHHHHHHHhccCCCCcChhhHHHHHHH--HHcccchhhHHHHHHHHHHhCCccchhHHhHHHhhHHhcCCHHHHHHH
Q 036237 296 RFMEALELLETMLIGDVLPNDATLVSALSA--VAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTV 373 (689)
Q Consensus 296 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a--~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~ 373 (689)
.+.+|+.+...|... |+...-..-+.+ ..+.+++..++.+.++.-.. .+..+.+...-...+.|+++.|.+-
T Consensus 93 i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~e---n~Ad~~in~gCllykegqyEaAvqk 166 (459)
T KOG4340|consen 93 IYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSE---NEADGQINLGCLLYKEGQYEAAVQK 166 (459)
T ss_pred ccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCC---CccchhccchheeeccccHHHHHHH
Confidence 777777777777542 222111111111 12334444444444333211 1233333333344455666666666
Q ss_pred HHhcCC----CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCC
Q 036237 374 FRAISK----KKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGI 449 (689)
Q Consensus 374 ~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~ 449 (689)
|+...+ .....||.-+. ..+.|+++.|++...+..++|++..+.. + -|...++..+ +. --
T Consensus 167 FqaAlqvsGyqpllAYniALa-Hy~~~qyasALk~iSEIieRG~r~HPEl-g--------IGm~tegiDv-rs-----vg 230 (459)
T KOG4340|consen 167 FQAALQVSGYQPLLAYNLALA-HYSSRQYASALKHISEIIERGIRQHPEL-G--------IGMTTEGIDV-RS-----VG 230 (459)
T ss_pred HHHHHhhcCCCchhHHHHHHH-HHhhhhHHHHHHHHHHHHHhhhhcCCcc-C--------ccceeccCch-hc-----cc
Confidence 655543 22334443333 2334555666666666555554322110 0 0000000000 00 00
Q ss_pred CCChhHHHHHH-------HHHHhcCCHHHHHHHHHhCC----CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCC
Q 036237 450 EPTIEHYGCLV-------DILCRTGYLEEAKSTIESMP----MRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDT 518 (689)
Q Consensus 450 ~p~~~~~~~li-------~~~~~~g~~~~A~~~~~~~~----~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 518 (689)
.|-.-+-+.++ ..+.+.|+++.|.+.+-.|| .+.|++|...+.-. -..+++..+.+-+.-+++++|--
T Consensus 231 Nt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~-n~~~~p~~g~~KLqFLL~~nPfP 309 (459)
T KOG4340|consen 231 NTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALM-NMDARPTEGFEKLQFLLQQNPFP 309 (459)
T ss_pred chHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHh-cccCCccccHHHHHHHHhcCCCC
Confidence 01112223333 34578899999999999996 33578887665432 23466777888888889999988
Q ss_pred chhHHHHHHHHHhcCCcchHHHHHHH
Q 036237 519 IGCYVVLSNIYAAAGQWDKVSEVREM 544 (689)
Q Consensus 519 ~~~~~~L~~~~~~~g~~~~A~~~~~~ 544 (689)
+.++..+.-+|++..-++-|..++.+
T Consensus 310 ~ETFANlLllyCKNeyf~lAADvLAE 335 (459)
T KOG4340|consen 310 PETFANLLLLYCKNEYFDLAADVLAE 335 (459)
T ss_pred hHHHHHHHHHHhhhHHHhHHHHHHhh
Confidence 89999999999999999999888754
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=98.51 E-value=0.00031 Score=73.09 Aligned_cols=193 Identities=11% Similarity=0.002 Sum_probs=93.2
Q ss_pred hHHHHHHHHHhCCCchHHHHHHHHhHhCCC-CCCcccHHH-HHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHH---H
Q 036237 89 LYNLLIKCYVFNQRSHEALTLFCDLLDRFL-LPDNFTLPC-VIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSS---L 163 (689)
Q Consensus 89 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~-~p~~~t~~~-ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~---l 163 (689)
.|..+...+...|+++.+.+.+....+... .++...... ....+...|+++++..+++.+++.. +.|...+.. +
T Consensus 8 a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~~~~~ 86 (355)
T cd05804 8 GHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDY-PRDLLALKLHLGA 86 (355)
T ss_pred HHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHhHHH
Confidence 455555666666777777666666554321 112111111 1123346678888888888877664 334433331 1
Q ss_pred HHHHHhcCChHHHHHHHhhCCCCCee---hHHHHHHHHHhCCChHHHHHHHhhCCC--C-CcchHHHHHHHHHhCCChHH
Q 036237 164 VSMYAKFGEIDLGRRVFDAMDDKDLV---SWNCLIDGYVKKGEVEVAMKLFDEMPD--R-DLFSWTCLVDGFSKCGKVEI 237 (689)
Q Consensus 164 i~~~~~~g~~~~A~~~~~~m~~~~~~---~~~~li~~~~~~g~~~~A~~~~~~m~~--~-d~~~~~~li~~~~~~g~~~~ 237 (689)
.......+..+.+.+.++.....+.. .+..+...+...|++++|...+++..+ | +...+..+...+...|++++
T Consensus 87 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~e 166 (355)
T cd05804 87 FGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKE 166 (355)
T ss_pred HHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHH
Confidence 22222234455555555432221111 222233455555666666555555543 2 22334444444444555555
Q ss_pred HHHHHhhcCcCCcchHHHHHHHHHhcCCHHHHHHHHHhcCCCC--hHHHHHHHHHHHHcCChHHHHHHHHHhc
Q 036237 238 AREIFYRMPNRNLVSWNAMINGYMKAGDVDSACELFDDMEIRD--LITWNSMIAGYELNGRFMEALELLETML 308 (689)
Q Consensus 238 A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~ 308 (689)
|...+++..+.... .++ ...|..+...+...|++++|+.++++..
T Consensus 167 A~~~l~~~l~~~~~--------------------------~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~ 213 (355)
T cd05804 167 GIAFMESWRDTWDC--------------------------SSMLRGHNWWHLALFYLERGDYEAALAIYDTHI 213 (355)
T ss_pred HHHHHHhhhhccCC--------------------------CcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHh
Confidence 55444443321000 011 1234456666777777777777777764
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.50 E-value=3.6e-06 Score=74.31 Aligned_cols=121 Identities=11% Similarity=0.018 Sum_probs=84.1
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhC-C
Q 036237 403 DLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEP-TIEHYGCLVDILCRTGYLEEAKSTIESM-P 480 (689)
Q Consensus 403 ~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~ 480 (689)
.+|++..+ +.|+. +..+..++...|++++|...|+... .+.| +...|..+..++.+.|++++|...|++. .
T Consensus 14 ~~~~~al~--~~p~~--~~~~g~~~~~~g~~~~A~~~~~~al---~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~ 86 (144)
T PRK15359 14 DILKQLLS--VDPET--VYASGYASWQEGDYSRAVIDFSWLV---MAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALM 86 (144)
T ss_pred HHHHHHHH--cCHHH--HHHHHHHHHHcCCHHHHHHHHHHHH---HcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 34445444 34543 3345566677777777777777776 2334 4667777777777778888877777775 2
Q ss_pred CCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchhHHHHHHHHH
Q 036237 481 MRP-NFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYA 530 (689)
Q Consensus 481 ~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~~~ 530 (689)
..| +...|..+..++...|+.++|+..+++++++.|+++..+...+++..
T Consensus 87 l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~ 137 (144)
T PRK15359 87 LDASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQI 137 (144)
T ss_pred cCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence 333 66677888888888888888888888888888888877777666543
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.47 E-value=1.4e-05 Score=89.56 Aligned_cols=201 Identities=14% Similarity=0.197 Sum_probs=169.1
Q ss_pred ccchhHHhHHHhhHHhcCCHHHHHHHHHhcCCC--------ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHH
Q 036237 348 VVDGVLGTLLIQMYSKCGSIESALTVFRAISKK--------KVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAIT 419 (689)
Q Consensus 348 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t 419 (689)
+.....|-..|......+++++|++++++.... -...|.++++.-...|.-+...++|++..+. .-....
T Consensus 1455 PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy--cd~~~V 1532 (1710)
T KOG1070|consen 1455 PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY--CDAYTV 1532 (1710)
T ss_pred CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh--cchHHH
Confidence 344666777788888899999999999987651 3458999999888899888999999999873 223446
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC---CHHHHHHHHHHH
Q 036237 420 FIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESM-PMRP---NFVIWMSLLSGA 495 (689)
Q Consensus 420 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p---~~~~~~~ll~~~ 495 (689)
|..|..-|.+.+.+++|.++++.|.++++ .....|...++.+.+...-+.|..++.++ ..-| ......-.+..-
T Consensus 1533 ~~~L~~iy~k~ek~~~A~ell~~m~KKF~--q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLE 1610 (1710)
T KOG1070|consen 1533 HLKLLGIYEKSEKNDEADELLRLMLKKFG--QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLE 1610 (1710)
T ss_pred HHHHHHHHHHhhcchhHHHHHHHHHHHhc--chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHH
Confidence 88899999999999999999999998766 67788999999999999999999999875 2223 344555566667
Q ss_pred HhcCChHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCcchHHHHHHHHHhCCCcc
Q 036237 496 RNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRK 552 (689)
Q Consensus 496 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~~~~~g~~~~A~~~~~~m~~~~~~~ 552 (689)
.++||.+.+..+|+..+.-.|.....+..++++=.+.|..+.++.+|++....++.+
T Consensus 1611 Fk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~ 1667 (1710)
T KOG1070|consen 1611 FKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSI 1667 (1710)
T ss_pred hhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCh
Confidence 889999999999999999999999999999999999999999999999999887753
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.46 E-value=8.6e-06 Score=76.09 Aligned_cols=118 Identities=8% Similarity=0.075 Sum_probs=95.0
Q ss_pred cCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHH-HhcCC--hHHH
Q 036237 430 AGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESM-PMRP-NFVIWMSLLSGA-RNHGN--KDIG 504 (689)
Q Consensus 430 ~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~-~~~g~--~~~a 504 (689)
.++.+++...++...+ .-+.+...|..|...|...|++++|...+++. ...| +...+..+..++ ...|+ .++|
T Consensus 52 ~~~~~~~i~~l~~~L~--~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A 129 (198)
T PRK10370 52 QQTPEAQLQALQDKIR--ANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQT 129 (198)
T ss_pred chhHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHH
Confidence 5566777777777663 23445788888888999999999999988876 3445 566777777764 66676 5999
Q ss_pred HHHHHHHhhcCCCCchhHHHHHHHHHhcCCcchHHHHHHHHHhCC
Q 036237 505 EYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRG 549 (689)
Q Consensus 505 ~~~~~~~~~~~p~~~~~~~~L~~~~~~~g~~~~A~~~~~~m~~~~ 549 (689)
..+++++++.+|+++.++..|+..+.+.|++++|...++++.+..
T Consensus 130 ~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~ 174 (198)
T PRK10370 130 REMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLN 174 (198)
T ss_pred HHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 999999999999999999999999999999999999999987643
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.44 E-value=3.3e-07 Score=57.70 Aligned_cols=32 Identities=34% Similarity=0.693 Sum_probs=22.4
Q ss_pred CCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC
Q 036237 448 GIEPTIEHYGCLVDILCRTGYLEEAKSTIESM 479 (689)
Q Consensus 448 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 479 (689)
|+.||..+|++||++|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 56677777777777777777777777777666
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.44 E-value=0.0012 Score=67.59 Aligned_cols=143 Identities=12% Similarity=0.091 Sum_probs=77.3
Q ss_pred hhHHHHHHHHHHhCCccchhHHhHHHhhHHhcCCHHHHHHHHHhcCC----C-ChhhHHHHHHHHHHcCCHHHHHHHHHH
Q 036237 333 NKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISK----K-KVGHWTAMIVGLGMHGMATQALDLFNK 407 (689)
Q Consensus 333 ~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----~-~~~~~~~li~~~~~~g~~~~A~~l~~~ 407 (689)
+....++..+...-...-..+|..+++.-.+..-+..|+.+|.++.+ + ++...++++.-|+ .++..-|.++|+-
T Consensus 348 ~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFeL 426 (656)
T KOG1914|consen 348 KKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFEL 426 (656)
T ss_pred hhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHHH
Confidence 33444444444433222334455555555555666666666666554 1 4445556665555 3455666666665
Q ss_pred HHHCCCCCCHH-HHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC--hhHHHHHHHHHHhcCCHHHHHHHHHhC
Q 036237 408 MCRMGMKPTAI-TFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPT--IEHYGCLVDILCRTGYLEEAKSTIESM 479 (689)
Q Consensus 408 m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~~ 479 (689)
-... -+|.. --...+.-+++.++-..++.+|++.... ++.|+ ...|..+++-=..-|++..+.++-+++
T Consensus 427 GLkk--f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s-~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~ 498 (656)
T KOG1914|consen 427 GLKK--FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTS-VLSADKSKEIWDRMLEYESNVGDLNSILKLEKRR 498 (656)
T ss_pred HHHh--cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhc-cCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 4331 22322 2233445555666666666677666643 45554 466666666666667766666665554
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.43 E-value=0.00059 Score=80.67 Aligned_cols=312 Identities=10% Similarity=-0.038 Sum_probs=159.6
Q ss_pred HhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhhCCC----CC---e---e--hHHHHHHHHHh
Q 036237 133 ARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDD----KD---L---V--SWNCLIDGYVK 200 (689)
Q Consensus 133 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~~---~---~--~~~~li~~~~~ 200 (689)
...|+++.+..++..+.......+..........+...|++++|...++.... .+ . . ....+...+..
T Consensus 385 ~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 464 (903)
T PRK04841 385 FNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAIN 464 (903)
T ss_pred HhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHh
Confidence 34566666666555442111122233334445555667777777777764421 11 1 1 11122234556
Q ss_pred CCChHHHHHHHhhCCC--C--Cc----chHHHHHHHHHhCCChHHHHHHHhhcCc----CC-----cchHHHHHHHHHhc
Q 036237 201 KGEVEVAMKLFDEMPD--R--DL----FSWTCLVDGFSKCGKVEIAREIFYRMPN----RN-----LVSWNAMINGYMKA 263 (689)
Q Consensus 201 ~g~~~~A~~~~~~m~~--~--d~----~~~~~li~~~~~~g~~~~A~~~~~~~~~----~~-----~~~~~~li~~~~~~ 263 (689)
.|++++|...+++... + +. ...+.+...+...|++++|...+++... .+ ..+...+...+...
T Consensus 465 ~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~ 544 (903)
T PRK04841 465 DGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQ 544 (903)
T ss_pred CCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHC
Confidence 7888888877776533 1 21 2344555566778888888888777653 11 23445566777888
Q ss_pred CCHHHHHHHHHhcCC-------C----ChHHHHHHHHHHHHcCChHHHHHHHHHhccCC--CCcC--hhhHHHHHHHHHc
Q 036237 264 GDVDSACELFDDMEI-------R----DLITWNSMIAGYELNGRFMEALELLETMLIGD--VLPN--DATLVSALSAVAG 328 (689)
Q Consensus 264 g~~~~A~~~~~~~~~-------~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~~p~--~~t~~~ll~a~~~ 328 (689)
|++++|...+++... + ....+..+...+...|++++|...+.+..... ..+. ...+..+......
T Consensus 545 G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~ 624 (903)
T PRK04841 545 GFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLA 624 (903)
T ss_pred CCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHH
Confidence 888888887766432 1 12234455566777799999988888775421 1121 1222333445556
Q ss_pred ccchhhHHHHHHHHHHhCCccc-hhHH-----hHHHhhHHhcCCHHHHHHHHHhcCCCChh-------hHHHHHHHHHHc
Q 036237 329 LAVLNKGRWMHSYIVKNGFVVD-GVLG-----TLLIQMYSKCGSIESALTVFRAISKKKVG-------HWTAMIVGLGMH 395 (689)
Q Consensus 329 ~~~~~~a~~i~~~~~~~g~~~~-~~~~-----~~li~~~~~~g~~~~A~~~~~~~~~~~~~-------~~~~li~~~~~~ 395 (689)
.|+.+.|...+..+....-... ...+ ...+..+...|+.+.|.+.+.....+... .+..+..++...
T Consensus 625 ~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 704 (903)
T PRK04841 625 RGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILL 704 (903)
T ss_pred cCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHc
Confidence 6777777776666543211000 0000 01123334456666666665554432110 123344455555
Q ss_pred CCHHHHHHHHHHHHHC----CCCCCH-HHHHHHHHHHhccCcHHHHHHHHHHhH
Q 036237 396 GMATQALDLFNKMCRM----GMKPTA-ITFIGVLNACSHAGLVNDGRRYFNMMI 444 (689)
Q Consensus 396 g~~~~A~~l~~~m~~~----g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~ 444 (689)
|++++|...+++.... |..++. .+...+..++...|+.++|...+.+..
T Consensus 705 g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al 758 (903)
T PRK04841 705 GQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEAL 758 (903)
T ss_pred CCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 6666666655554432 111111 133333344445555555555555444
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.37 E-value=4.8e-06 Score=73.50 Aligned_cols=107 Identities=7% Similarity=-0.028 Sum_probs=91.7
Q ss_pred HHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHhhcC
Q 036237 438 RYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESM-PMRP-NFVIWMSLLSGARNHGNKDIGEYAANNLIKVA 515 (689)
Q Consensus 438 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 515 (689)
.+++... .+.|+ .+..+...+...|++++|...|+.. ...| +...|..+..++...|++++|+..++++++++
T Consensus 14 ~~~~~al---~~~p~--~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~ 88 (144)
T PRK15359 14 DILKQLL---SVDPE--TVYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD 88 (144)
T ss_pred HHHHHHH---HcCHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 3445544 34455 3556788999999999999999986 3445 67799999999999999999999999999999
Q ss_pred CCCchhHHHHHHHHHhcCCcchHHHHHHHHHhCC
Q 036237 516 PDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRG 549 (689)
Q Consensus 516 p~~~~~~~~L~~~~~~~g~~~~A~~~~~~m~~~~ 549 (689)
|+++..+..++.++...|++++|...++...+..
T Consensus 89 p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~ 122 (144)
T PRK15359 89 ASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMS 122 (144)
T ss_pred CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999987643
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=98.35 E-value=9.8e-06 Score=70.34 Aligned_cols=118 Identities=10% Similarity=0.064 Sum_probs=96.4
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchhHHHHHHHHH
Q 036237 453 IEHYGCLVDILCRTGYLEEAKSTIESM-PMRP-NFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYA 530 (689)
Q Consensus 453 ~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~~~ 530 (689)
....-.+...+...|++++|.++|+-. ...| +..-|..|...|...|++++|+..|.++..++|++|.++..++.+|.
T Consensus 35 l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L 114 (157)
T PRK15363 35 LNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYL 114 (157)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHH
Confidence 445556677788999999999999886 3445 66789999999999999999999999999999999999999999999
Q ss_pred hcCCcchHHHHHHHHHhCCCccCCcccEEEECCEEEEEeeCCCCCcChHHHHHHHHHHHHHHH
Q 036237 531 AAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLK 593 (689)
Q Consensus 531 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~l~~l~~~m~ 593 (689)
..|+.+.|++-|+...... ..+|+..++..+.+.+++.+.
T Consensus 115 ~lG~~~~A~~aF~~Ai~~~-----------------------~~~~~~~~l~~~A~~~L~~l~ 154 (157)
T PRK15363 115 ACDNVCYAIKALKAVVRIC-----------------------GEVSEHQILRQRAEKMLQQLS 154 (157)
T ss_pred HcCCHHHHHHHHHHHHHHh-----------------------ccChhHHHHHHHHHHHHHHhh
Confidence 9999999999999877532 124555666666666665554
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.34 E-value=3.6e-05 Score=85.14 Aligned_cols=189 Identities=11% Similarity=0.070 Sum_probs=140.6
Q ss_pred hhHHHHHH-HHHcccchhhH-HHHHHHHHHhCCccchhHHhHHHhhHHhcCCHHHHHHHHHhcCC------CChhhHHHH
Q 036237 317 ATLVSALS-AVAGLAVLNKG-RWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISK------KKVGHWTAM 388 (689)
Q Consensus 317 ~t~~~ll~-a~~~~~~~~~a-~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~------~~~~~~~~l 388 (689)
.|...++. +.+..|..+++ .+++.++.+ + ..+.|.+..+.+-+-++.. .++..+-.|
T Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L 92 (694)
T PRK15179 28 PTILDLLEAALAEPGESEEAGRELLQQARQ------------V---LERHAAVHKPAAALPELLDYVRRYPHTELFQVLV 92 (694)
T ss_pred cHHHhHHHHHhcCcccchhHHHHHHHHHHH------------H---HHHhhhhcchHhhHHHHHHHHHhccccHHHHHHH
Confidence 34444444 44566665554 555555432 2 2333444444333333321 357788889
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhc
Q 036237 389 IVGLGMHGMATQALDLFNKMCRMGMKPTAI-TFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPT-IEHYGCLVDILCRT 466 (689)
Q Consensus 389 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~ 466 (689)
.....+.|++++|+.+++...+ +.||.. ....+...+.+.+.+++|...+++... ..|+ ......+..++.+.
T Consensus 93 a~i~~~~g~~~ea~~~l~~~~~--~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~---~~p~~~~~~~~~a~~l~~~ 167 (694)
T PRK15179 93 ARALEAAHRSDEGLAVWRGIHQ--RFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFS---GGSSSAREILLEAKSWDEI 167 (694)
T ss_pred HHHHHHcCCcHHHHHHHHHHHh--hCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhh---cCCCCHHHHHHHHHHHHHh
Confidence 9999999999999999999998 688866 677788899999999999999999983 4565 67888899999999
Q ss_pred CCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchhHHHH
Q 036237 467 GYLEEAKSTIESMP-MRP-NFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVL 525 (689)
Q Consensus 467 g~~~~A~~~~~~~~-~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L 525 (689)
|++++|..+|++.- -.| +..+|.++..++...|+.++|...|+++++...+-...|+.+
T Consensus 168 g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~~~ 228 (694)
T PRK15179 168 GQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLTRR 228 (694)
T ss_pred cchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHHHH
Confidence 99999999999973 334 477999999999999999999999999999665544555544
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.33 E-value=1.1e-05 Score=84.92 Aligned_cols=190 Identities=16% Similarity=0.200 Sum_probs=152.7
Q ss_pred CCccchhHHhHHHhhHHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 036237 346 GFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLN 425 (689)
Q Consensus 346 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~ 425 (689)
+++|--..-..+.+.+.++|-...|..+|+++ ..|.-.|.+|...|+..+|..+..+-.+ -+||+.-|..+.+
T Consensus 393 ~lpp~Wq~q~~laell~slGitksAl~I~Erl-----emw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGD 465 (777)
T KOG1128|consen 393 HLPPIWQLQRLLAELLLSLGITKSALVIFERL-----EMWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGD 465 (777)
T ss_pred CCCCcchHHHHHHHHHHHcchHHHHHHHHHhH-----HHHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhh
Confidence 45666667777889999999999999999975 4588889999999999999999988887 4788999999999
Q ss_pred HHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHh-CCCCC-CHHHHHHHHHHHHhcCChHH
Q 036237 426 ACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIES-MPMRP-NFVIWMSLLSGARNHGNKDI 503 (689)
Q Consensus 426 a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~-~~~~p-~~~~~~~ll~~~~~~g~~~~ 503 (689)
......-+++|.++++....+ .-..+.....+.++++++.+.|+. +.+.| -..+|-.+..+..+.++.+.
T Consensus 466 v~~d~s~yEkawElsn~~sar--------A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~ 537 (777)
T KOG1128|consen 466 VLHDPSLYEKAWELSNYISAR--------AQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQA 537 (777)
T ss_pred hccChHHHHHHHHHhhhhhHH--------HHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHH
Confidence 888888889999988766532 111222233457888888888875 34444 55688888888888889999
Q ss_pred HHHHHHHHhhcCCCCchhHHHHHHHHHhcCCcchHHHHHHHHHhCCC
Q 036237 504 GEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGF 550 (689)
Q Consensus 504 a~~~~~~~~~~~p~~~~~~~~L~~~~~~~g~~~~A~~~~~~m~~~~~ 550 (689)
|.+.|...+.++|++...+++++-+|.+.|+-.+|...+++..+.+.
T Consensus 538 av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~ 584 (777)
T KOG1128|consen 538 AVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNY 584 (777)
T ss_pred HHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCC
Confidence 99999999999999988999999999999999999888888877663
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.33 E-value=3.1e-05 Score=72.12 Aligned_cols=135 Identities=13% Similarity=0.079 Sum_probs=108.4
Q ss_pred CCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC--CCCCCHHHHHH
Q 036237 413 MKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESM--PMRPNFVIWMS 490 (689)
Q Consensus 413 ~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~ 490 (689)
..|+......+-.++...|+-+.+..+...... ....|......++....+.|++.+|...|++. ..++|...|+.
T Consensus 62 ~~p~d~~i~~~a~a~~~~G~a~~~l~~~~~~~~--~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~ 139 (257)
T COG5010 62 RNPEDLSIAKLATALYLRGDADSSLAVLQKSAI--AYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNL 139 (257)
T ss_pred cCcchHHHHHHHHHHHhcccccchHHHHhhhhc--cCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhH
Confidence 355433335555677777888888877777652 33444556667889999999999999999987 34568889999
Q ss_pred HHHHHHhcCChHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCcchHHHHHHHHHhCC
Q 036237 491 LLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRG 549 (689)
Q Consensus 491 ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~~~~~g~~~~A~~~~~~m~~~~ 549 (689)
+..+|.+.|+++.|...|.+++++.|+++..++.|+..|.-.|++++|..++......+
T Consensus 140 lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~ 198 (257)
T COG5010 140 LGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSP 198 (257)
T ss_pred HHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC
Confidence 99999999999999999999999999999999999999999999999999988876544
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.31 E-value=3.6e-05 Score=74.77 Aligned_cols=181 Identities=13% Similarity=0.049 Sum_probs=126.9
Q ss_pred ChhhHHHHHHHHHcccchhhHHHHHHHHHHhCCcc--chhHHhHHHhhHHhcCCHHHHHHHHHhcCCC---Chh---hHH
Q 036237 315 NDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVV--DGVLGTLLIQMYSKCGSIESALTVFRAISKK---KVG---HWT 386 (689)
Q Consensus 315 ~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~---~~~ 386 (689)
....+......+...|+++.|...++.+.+..... ....+..+...|.+.|++++|...|+++.+. +.. .+.
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 111 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYY 111 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHH
Confidence 34556677778889999999999999998765321 1246677889999999999999999998652 222 466
Q ss_pred HHHHHHHHc--------CCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHH
Q 036237 387 AMIVGLGMH--------GMATQALDLFNKMCRMGMKPTAI-TFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYG 457 (689)
Q Consensus 387 ~li~~~~~~--------g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~ 457 (689)
.+..++.+. |++++|++.|+++... .|+.. ....+.... .... ... ....
T Consensus 112 ~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~~----~~~~------~~~---------~~~~ 170 (235)
T TIGR03302 112 LRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRMD----YLRN------RLA---------GKEL 170 (235)
T ss_pred HHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHHH----HHHH------HHH---------HHHH
Confidence 666667665 7899999999999874 56643 222111110 0000 000 1123
Q ss_pred HHHHHHHhcCCHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCC
Q 036237 458 CLVDILCRTGYLEEAKSTIESM----PMRP-NFVIWMSLLSGARNHGNKDIGEYAANNLIKVAP 516 (689)
Q Consensus 458 ~li~~~~~~g~~~~A~~~~~~~----~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p 516 (689)
.+.+.|.+.|++++|...+++. +..| ....|..+..++...|+.++|...++.+....|
T Consensus 171 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 171 YVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYP 234 (235)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 5667788999999999888876 2223 356888899999999999999998887776555
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.30 E-value=0.00012 Score=73.51 Aligned_cols=176 Identities=11% Similarity=0.079 Sum_probs=112.7
Q ss_pred CHHHHHHHHHhcCC---CChhhHHHHHHHHHHcCCH--HHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCcHHHHHHH
Q 036237 366 SIESALTVFRAISK---KKVGHWTAMIVGLGMHGMA--TQALDLFNKMCRMGMKP-TAITFIGVLNACSHAGLVNDGRRY 439 (689)
Q Consensus 366 ~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~--~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~ 439 (689)
.+++++..++++.. ++..+|+.....+.+.|+. ++++.+++++.+. .| |..+|.....++.+.|+++++++.
T Consensus 87 ~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~--dpkNy~AW~~R~w~l~~l~~~~eeL~~ 164 (320)
T PLN02789 87 DLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILSL--DAKNYHAWSHRQWVLRTLGGWEDELEY 164 (320)
T ss_pred hHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHhhhHHHHHHH
Confidence 35666666665543 3444566555445555543 5667777777763 34 345677777777777778888888
Q ss_pred HHHhHHhcCCCCChhHHHHHHHHHHhc---CCH----HHHHHHHHh-CCCCC-CHHHHHHHHHHHHhc----CChHHHHH
Q 036237 440 FNMMINDYGIEPTIEHYGCLVDILCRT---GYL----EEAKSTIES-MPMRP-NFVIWMSLLSGARNH----GNKDIGEY 506 (689)
Q Consensus 440 ~~~~~~~~~~~p~~~~~~~li~~~~~~---g~~----~~A~~~~~~-~~~~p-~~~~~~~ll~~~~~~----g~~~~a~~ 506 (689)
++++++. -.-+...|+....++.+. |.. +++.++..+ +...| |...|+-+...+... ++..+|..
T Consensus 165 ~~~~I~~--d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~ 242 (320)
T PLN02789 165 CHQLLEE--DVRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSS 242 (320)
T ss_pred HHHHHHH--CCCchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHH
Confidence 8877742 122345555555444443 222 455666533 34445 566888888888773 34567888
Q ss_pred HHHHHhhcCCCCchhHHHHHHHHHhcC------------------CcchHHHHHHHH
Q 036237 507 AANNLIKVAPDTIGCYVVLSNIYAAAG------------------QWDKVSEVREMM 545 (689)
Q Consensus 507 ~~~~~~~~~p~~~~~~~~L~~~~~~~g------------------~~~~A~~~~~~m 545 (689)
.+.++++.+|+++.++..|+++|+... ..++|.++++.+
T Consensus 243 ~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~l 299 (320)
T PLN02789 243 VCLEVLSKDSNHVFALSDLLDLLCEGLQPTAEFRDTVDTLAEELSDSTLAQAVCSEL 299 (320)
T ss_pred HHHHhhcccCCcHHHHHHHHHHHHhhhccchhhhhhhhccccccccHHHHHHHHHHH
Confidence 888888889999999999999998643 235677777777
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.28 E-value=8.5e-05 Score=69.42 Aligned_cols=154 Identities=8% Similarity=0.090 Sum_probs=110.5
Q ss_pred HhhHHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHH
Q 036237 358 IQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGR 437 (689)
Q Consensus 358 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~ 437 (689)
+-.|...|+++......+.+..+. ..|...++.++++..+++..+.. +.|...|..+...+...|++++|.
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~~~--------~~~~~~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~ 93 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLADPL--------HQFASQQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNAL 93 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhCcc--------ccccCchhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 345677777766554443332221 01222566777887787777642 344567888888888999999999
Q ss_pred HHHHHhHHhcCCCC-ChhHHHHHHHH-HHhcCC--HHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 036237 438 RYFNMMINDYGIEP-TIEHYGCLVDI-LCRTGY--LEEAKSTIESM-PMRP-NFVIWMSLLSGARNHGNKDIGEYAANNL 511 (689)
Q Consensus 438 ~~~~~~~~~~~~~p-~~~~~~~li~~-~~~~g~--~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 511 (689)
..|+...+ +.| +...+..+..+ +.+.|+ .++|.+++++. ...| +...+..+...+...|++++|+..++++
T Consensus 94 ~a~~~Al~---l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~a 170 (198)
T PRK10370 94 LAYRQALQ---LRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKV 170 (198)
T ss_pred HHHHHHHH---hCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99998873 445 46777888876 467777 58999999886 3445 6678888999999999999999999999
Q ss_pred hhcCCCCchhHH
Q 036237 512 IKVAPDTIGCYV 523 (689)
Q Consensus 512 ~~~~p~~~~~~~ 523 (689)
+++.|.+..-+.
T Consensus 171 L~l~~~~~~r~~ 182 (198)
T PRK10370 171 LDLNSPRVNRTQ 182 (198)
T ss_pred HhhCCCCccHHH
Confidence 998887765443
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.27 E-value=5.9e-05 Score=77.65 Aligned_cols=83 Identities=18% Similarity=0.185 Sum_probs=50.0
Q ss_pred HHHhcCCHHHHHHHHHhcCCC---ChHHHHHHHHHHHHcCChHHHHHHHHHhccCCCCcCh-hhHHHHHHHHHcccchhh
Q 036237 259 GYMKAGDVDSACELFDDMEIR---DLITWNSMIAGYELNGRFMEALELLETMLIGDVLPND-ATLVSALSAVAGLAVLNK 334 (689)
Q Consensus 259 ~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~~~~~~ 334 (689)
-+.+.|++.+|.-.|+...++ +...|--|....+.+++-..|+..+++.++. .|+. .....|.-.|...|.-..
T Consensus 294 ~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~L--dP~NleaLmaLAVSytNeg~q~~ 371 (579)
T KOG1125|consen 294 NLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLEL--DPTNLEALMALAVSYTNEGLQNQ 371 (579)
T ss_pred HHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhc--CCccHHHHHHHHHHHhhhhhHHH
Confidence 345667777777777766544 4467777777777777777777777777663 4443 233334444455555455
Q ss_pred HHHHHHHHH
Q 036237 335 GRWMHSYIV 343 (689)
Q Consensus 335 a~~i~~~~~ 343 (689)
|...+..-+
T Consensus 372 Al~~L~~Wi 380 (579)
T KOG1125|consen 372 ALKMLDKWI 380 (579)
T ss_pred HHHHHHHHH
Confidence 554444443
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.22 E-value=0.00015 Score=80.27 Aligned_cols=196 Identities=13% Similarity=0.076 Sum_probs=140.1
Q ss_pred ChHHHHHHHHHHHHcCChHHHH-HHHHHhccCCCCcChhhHHHHHHHHHcccchhhHHHHHHHHHHhCCccchhHHhHHH
Q 036237 280 DLITWNSMIAGYELNGRFMEAL-ELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLI 358 (689)
Q Consensus 280 ~~~~~~~li~~~~~~g~~~~A~-~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li 358 (689)
++...+.+=.+...-|..++|- ++..+..+ ++.+.+.......+..-.... -..+..++..+-.|.
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~La 93 (694)
T PRK15179 27 GPTILDLLEAALAEPGESEEAGRELLQQARQ------------VLERHAAVHKPAAALPELLDY-VRRYPHTELFQVLVA 93 (694)
T ss_pred CcHHHhHHHHHhcCcccchhHHHHHHHHHHH------------HHHHhhhhcchHhhHHHHHHH-HHhccccHHHHHHHH
Confidence 3444555555666677777763 45555432 233332222222222111111 134566788888999
Q ss_pred hhHHhcCCHHHHHHHHHhcCC--C-ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccCcHH
Q 036237 359 QMYSKCGSIESALTVFRAISK--K-KVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAI-TFIGVLNACSHAGLVN 434 (689)
Q Consensus 359 ~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~ 434 (689)
+.....|.+++|..+++...+ | +...+..++..+.+.+++++|+..+++... ..|+.. ....+..++.+.|.++
T Consensus 94 ~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~--~~p~~~~~~~~~a~~l~~~g~~~ 171 (694)
T PRK15179 94 RALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFS--GGSSSAREILLEAKSWDEIGQSE 171 (694)
T ss_pred HHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhh--cCCCCHHHHHHHHHHHHHhcchH
Confidence 999999999999999999876 4 456788899999999999999999999998 467765 4556667888999999
Q ss_pred HHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCCHHHHHHHHH
Q 036237 435 DGRRYFNMMINDYGIEPT-IEHYGCLVDILCRTGYLEEAKSTIESMP--MRPNFVIWMSLLS 493 (689)
Q Consensus 435 ~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~ll~ 493 (689)
+|..+|+++.. -.|+ ...+..+...+-..|+.++|...|++.- ..|....|+.++.
T Consensus 172 ~A~~~y~~~~~---~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 230 (694)
T PRK15179 172 QADACFERLSR---QHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLTRRLV 230 (694)
T ss_pred HHHHHHHHHHh---cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHHHHHH
Confidence 99999999994 2344 7889999999999999999999999872 2344555555443
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.22 E-value=0.016 Score=63.33 Aligned_cols=68 Identities=15% Similarity=0.188 Sum_probs=54.4
Q ss_pred HHHHHHHHHHhcCChH---HHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCcchHHHHHHHHHhCCCccCC
Q 036237 487 IWMSLLSGARNHGNKD---IGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDP 554 (689)
Q Consensus 487 ~~~~ll~~~~~~g~~~---~a~~~~~~~~~~~p~~~~~~~~L~~~~~~~g~~~~A~~~~~~m~~~~~~~~~ 554 (689)
+.+.|+..|.+.++.. +|+-+++..+...|.|..+-..|+.+|.-.|-+..|.++++.+--+.|..+.
T Consensus 438 av~~Lid~~rktnd~~~l~eaI~LLE~glt~s~hnf~~KLlLiriY~~lGa~p~a~~~y~tLdIK~IQ~DT 508 (932)
T KOG2053|consen 438 AVNHLIDLWRKTNDLTDLFEAITLLENGLTKSPHNFQTKLLLIRIYSYLGAFPDAYELYKTLDIKNIQTDT 508 (932)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHhcCChhHHHHHHhcchHHhhhcc
Confidence 4567778888887654 6677777778888989888889999999999999999999988766666554
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.20 E-value=0.00053 Score=69.64 Aligned_cols=177 Identities=16% Similarity=0.073 Sum_probs=122.2
Q ss_pred CCHHHHHHHHHhcCC------CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHH
Q 036237 365 GSIESALTVFRAISK------KKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRR 438 (689)
Q Consensus 365 g~~~~A~~~~~~~~~------~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~ 438 (689)
.++.+++..-+.++. ++...+...+.+.........+-.++. +... -.-...-|..-+ .....|.+++|+.
T Consensus 251 ~RIa~lr~ra~q~p~~~~~d~~~~~~~~~r~~~~~~~~~~~~~~~~~~-~~~~-~~~~aa~YG~A~-~~~~~~~~d~A~~ 327 (484)
T COG4783 251 ERIADLRNRAEQSPPYNKLDSPDFQLARARIRAKYEALPNQQAADLLA-KRSK-RGGLAAQYGRAL-QTYLAGQYDEALK 327 (484)
T ss_pred hHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHhccccccchHHHHH-HHhC-ccchHHHHHHHH-HHHHhcccchHHH
Confidence 456666666666664 234445555554433332222322222 2221 011122333333 4456788999999
Q ss_pred HHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHhhcCC
Q 036237 439 YFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESM-PMRPN-FVIWMSLLSGARNHGNKDIGEYAANNLIKVAP 516 (689)
Q Consensus 439 ~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p 516 (689)
.++.++. ..+-|+.......+.+.+.++.++|.+.++++ ...|+ ...+.++..++.+.|++.+|+..++....-+|
T Consensus 328 ~l~~L~~--~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p 405 (484)
T COG4783 328 LLQPLIA--AQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDP 405 (484)
T ss_pred HHHHHHH--hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCC
Confidence 9999884 33334666677789999999999999999887 45576 66888889999999999999999999999999
Q ss_pred CCchhHHHHHHHHHhcCCcchHHHHHHHHH
Q 036237 517 DTIGCYVVLSNIYAAAGQWDKVSEVREMMK 546 (689)
Q Consensus 517 ~~~~~~~~L~~~~~~~g~~~~A~~~~~~m~ 546 (689)
+++..|..|+.+|...|+..++...+.++.
T Consensus 406 ~dp~~w~~LAqay~~~g~~~~a~~A~AE~~ 435 (484)
T COG4783 406 EDPNGWDLLAQAYAELGNRAEALLARAEGY 435 (484)
T ss_pred CCchHHHHHHHHHHHhCchHHHHHHHHHHH
Confidence 999999999999999999888888777654
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.14 E-value=9.1e-05 Score=78.25 Aligned_cols=211 Identities=13% Similarity=0.137 Sum_probs=159.6
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHhccCCCCcChhhHHHHHHHHHccc
Q 036237 251 VSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLA 330 (689)
Q Consensus 251 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~ 330 (689)
..-..+...+.++|-...|..+|+++ ..|...|.+|...|+..+|..+..+-.+ -+||..-|..+....-...
T Consensus 399 q~q~~laell~slGitksAl~I~Erl-----emw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGDv~~d~s 471 (777)
T KOG1128|consen 399 QLQRLLAELLLSLGITKSALVIFERL-----EMWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGDVLHDPS 471 (777)
T ss_pred hHHHHHHHHHHHcchHHHHHHHHHhH-----HHHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhhhccChH
Confidence 34456788899999999999999875 4688889999999999999998888877 3688888888777776666
Q ss_pred chhhHHHHHHHHHHhCCccchhHHhHHHhhHHhcCCHHHHHHHHHhcCCC---ChhhHHHHHHHHHHcCCHHHHHHHHHH
Q 036237 331 VLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKK---KVGHWTAMIVGLGMHGMATQALDLFNK 407 (689)
Q Consensus 331 ~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~ 407 (689)
-+++|.++.+..... .-..+.....+.++++++.+.|+.-.+- -..+|-....+..+.+++..|.+.|..
T Consensus 472 ~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~r 544 (777)
T KOG1128|consen 472 LYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHR 544 (777)
T ss_pred HHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHH
Confidence 677777777664332 1122222233468888888888865542 456888888888888888888888888
Q ss_pred HHHCCCCCCHH-HHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC
Q 036237 408 MCRMGMKPTAI-TFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESM 479 (689)
Q Consensus 408 m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 479 (689)
-.. ..||.. .|+.+-.++.+.++-.+|...+.+..+ +. .-+...|...+-...+.|.+++|++.+.++
T Consensus 545 cvt--L~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlK-cn-~~~w~iWENymlvsvdvge~eda~~A~~rl 613 (777)
T KOG1128|consen 545 CVT--LEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALK-CN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRL 613 (777)
T ss_pred Hhh--cCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhh-cC-CCCCeeeechhhhhhhcccHHHHHHHHHHH
Confidence 776 577755 788888888888888888888888874 34 444556666777778888888888888776
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.13 E-value=0.00026 Score=79.88 Aligned_cols=215 Identities=20% Similarity=0.159 Sum_probs=146.4
Q ss_pred chHHHHHHHHHhCCChHHHHHHHhhcCcC--------CcchHHHHHHHHHhcCCHHHHHHHHHhcCCC-C-hHHHHHHHH
Q 036237 220 FSWTCLVDGFSKCGKVEIAREIFYRMPNR--------NLVSWNAMINGYMKAGDVDSACELFDDMEIR-D-LITWNSMIA 289 (689)
Q Consensus 220 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~--------~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~-~~~~~~li~ 289 (689)
..|-..|....+.++.++|.++.++++.. -..+|.+++++-..-|.-+...++|++..+- | -..|..|..
T Consensus 1459 i~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqycd~~~V~~~L~~ 1538 (1710)
T KOG1070|consen 1459 ILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYCDAYTVHLKLLG 1538 (1710)
T ss_pred hHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhcchHHHHHHHHH
Confidence 45666666666666666666666666531 1456666666666666666677777776543 2 345667777
Q ss_pred HHHHcCChHHHHHHHHHhccCCCCcChhhHHHHHHHHHcccchhhHHHHHHHHHHhCCc-cchhHHhHHHhhHHhcCCHH
Q 036237 290 GYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFV-VDGVLGTLLIQMYSKCGSIE 368 (689)
Q Consensus 290 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~-~~~~~~~~li~~~~~~g~~~ 368 (689)
.|.+.+.+++|.++|+.|.+. +.-....|...+..+.+...-+.|..++.++++.-.. ....+..-.+++-.++|+.+
T Consensus 1539 iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GDae 1617 (1710)
T KOG1070|consen 1539 IYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYGDAE 1617 (1710)
T ss_pred HHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCCch
Confidence 777777777777777777653 3345556666666677777767777777776664322 24556666777788899999
Q ss_pred HHHHHHHhcCC---CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHhccCcHHH
Q 036237 369 SALTVFRAISK---KKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAI--TFIGVLNACSHAGLVND 435 (689)
Q Consensus 369 ~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~--t~~~ll~a~~~~g~~~~ 435 (689)
.++.+|+.... +....|+..|..-.++|+.+.+..+|++....++.|-.. .|.-.|..-.+.|+-..
T Consensus 1618 RGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~ 1689 (1710)
T KOG1070|consen 1618 RGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEKN 1689 (1710)
T ss_pred hhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchhh
Confidence 99999998765 356789999999999999999999999999988877643 45555544444454433
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.12 E-value=0.00021 Score=66.78 Aligned_cols=117 Identities=12% Similarity=0.055 Sum_probs=61.2
Q ss_pred HHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCC
Q 036237 423 VLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESM-PMRP-NFVIWMSLLSGARNHGN 500 (689)
Q Consensus 423 ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~ 500 (689)
.+......|++.+|...+.+... .-++|...|+.+.-.|.+.|++++|..-|.+. .+.| ++...+.|...+.-.|+
T Consensus 106 ~gk~~~~~g~~~~A~~~~rkA~~--l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd 183 (257)
T COG5010 106 QGKNQIRNGNFGEAVSVLRKAAR--LAPTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGD 183 (257)
T ss_pred HHHHHHHhcchHHHHHHHHHHhc--cCCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCC
Confidence 44444555555555555555542 33344555555555555555555555555443 2222 33445555555555555
Q ss_pred hHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCcchHHHH
Q 036237 501 KDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEV 541 (689)
Q Consensus 501 ~~~a~~~~~~~~~~~p~~~~~~~~L~~~~~~~g~~~~A~~~ 541 (689)
.+.|+.++.......+.++.+-..|+.+....|++++|..+
T Consensus 184 ~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i 224 (257)
T COG5010 184 LEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDI 224 (257)
T ss_pred HHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhh
Confidence 55555555555555555555555555555555555555544
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.12 E-value=3.6e-05 Score=67.44 Aligned_cols=100 Identities=16% Similarity=0.181 Sum_probs=77.0
Q ss_pred CCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchhHHHH
Q 036237 449 IEPT-IEHYGCLVDILCRTGYLEEAKSTIESM-PMRP-NFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVL 525 (689)
Q Consensus 449 ~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L 525 (689)
..|+ ......+...+...|++++|.+.++.. ...| +...|..+...+...|+++.|...++++++.+|+++..+..+
T Consensus 12 ~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l 91 (135)
T TIGR02552 12 LDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHA 91 (135)
T ss_pred CChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHH
Confidence 3443 455666777777888888888887775 2233 566777888888888888888888888888888888888888
Q ss_pred HHHHHhcCCcchHHHHHHHHHhC
Q 036237 526 SNIYAAAGQWDKVSEVREMMKKR 548 (689)
Q Consensus 526 ~~~~~~~g~~~~A~~~~~~m~~~ 548 (689)
+.+|...|++++|...++...+.
T Consensus 92 a~~~~~~g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 92 AECLLALGEPESALKALDLAIEI 114 (135)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh
Confidence 88888888888888888877663
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=98.08 E-value=6.6e-06 Score=52.54 Aligned_cols=35 Identities=31% Similarity=0.573 Sum_probs=31.7
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH
Q 036237 383 GHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTA 417 (689)
Q Consensus 383 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~ 417 (689)
.+||++|.+|++.|++++|.++|++|.+.|+.||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 37999999999999999999999999999999973
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.08 E-value=0.00066 Score=76.10 Aligned_cols=44 Identities=11% Similarity=0.073 Sum_probs=24.2
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchhHHHHHHHHH
Q 036237 487 IWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYA 530 (689)
Q Consensus 487 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~~~ 530 (689)
++--+-..|...++++.++.+++.+++.+|.|..+...|+..|.
T Consensus 225 ~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 225 LLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYK 268 (906)
T ss_pred HHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHH
Confidence 33334444555555666666666666666665555555555554
|
|
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=98.07 E-value=6.1e-06 Score=52.69 Aligned_cols=35 Identities=43% Similarity=0.556 Sum_probs=31.2
Q ss_pred hhHHHHHHHHHhCCCchHHHHHHHHhHhCCCCCCc
Q 036237 88 VLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDN 122 (689)
Q Consensus 88 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~ 122 (689)
.+||++|.+|++.|++++|.++|++|.+.|+.||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 47999999999999999999999999999998874
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.03 E-value=0.00058 Score=69.35 Aligned_cols=147 Identities=14% Similarity=0.110 Sum_probs=118.5
Q ss_pred ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHH-HHHHhccCcHHHHHHHHHHhHHhcCCCCC-hhHHHH
Q 036237 381 KVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGV-LNACSHAGLVNDGRRYFNMMINDYGIEPT-IEHYGC 458 (689)
Q Consensus 381 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~l-l~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~ 458 (689)
....+......+...|++++|+..++.+.. -.||...|..+ ...+...++.++|.+.++.+. ...|+ ....-.
T Consensus 305 ~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~--~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal---~l~P~~~~l~~~ 379 (484)
T COG4783 305 GLAAQYGRALQTYLAGQYDEALKLLQPLIA--AQPDNPYYLELAGDILLEANKAKEAIERLKKAL---ALDPNSPLLQLN 379 (484)
T ss_pred chHHHHHHHHHHHHhcccchHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH---hcCCCccHHHHH
Confidence 344555555567778999999999999887 46776666555 467889999999999999998 46677 566778
Q ss_pred HHHHHHhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCcc
Q 036237 459 LVDILCRTGYLEEAKSTIESMP--MRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWD 536 (689)
Q Consensus 459 li~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~~~~~g~~~ 536 (689)
+.++|.+.|++.+|..+++... .+-|+..|..|..+|...|+..++.. ..+..|+-.|+|+
T Consensus 380 ~a~all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~-----------------A~AE~~~~~G~~~ 442 (484)
T COG4783 380 LAQALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALL-----------------ARAEGYALAGRLE 442 (484)
T ss_pred HHHHHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHH-----------------HHHHHHHhCCCHH
Confidence 8899999999999999999873 44588899999999999998776654 4556788899999
Q ss_pred hHHHHHHHHHhCC
Q 036237 537 KVSEVREMMKKRG 549 (689)
Q Consensus 537 ~A~~~~~~m~~~~ 549 (689)
+|........++.
T Consensus 443 ~A~~~l~~A~~~~ 455 (484)
T COG4783 443 QAIIFLMRASQQV 455 (484)
T ss_pred HHHHHHHHHHHhc
Confidence 9999998887654
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.0014 Score=65.97 Aligned_cols=182 Identities=13% Similarity=0.087 Sum_probs=131.1
Q ss_pred HHhcCCHHHHHHHHHhcCCC---ChhhHHHHHHHHHHcC-CHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCc--H
Q 036237 361 YSKCGSIESALTVFRAISKK---KVGHWTAMIVGLGMHG-MATQALDLFNKMCRMGMKPT-AITFIGVLNACSHAGL--V 433 (689)
Q Consensus 361 ~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g-~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~--~ 433 (689)
+...+..++|....+.+... +..+|+.....+...| ++++++..++++.+. .|+ ..+|..-...+.+.|. .
T Consensus 47 l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~--npknyqaW~~R~~~l~~l~~~~~ 124 (320)
T PLN02789 47 YASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAED--NPKNYQIWHHRRWLAEKLGPDAA 124 (320)
T ss_pred HHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHH--CCcchHHhHHHHHHHHHcCchhh
Confidence 34456777888888877653 4456777667777777 579999999999985 344 3356655445555565 3
Q ss_pred HHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhc---CCh----HH
Q 036237 434 NDGRRYFNMMINDYGIEP-TIEHYGCLVDILCRTGYLEEAKSTIESM-PMR-PNFVIWMSLLSGARNH---GNK----DI 503 (689)
Q Consensus 434 ~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~ll~~~~~~---g~~----~~ 503 (689)
+++..+++.+.+ ..| +...|+....++.+.|++++|++.++++ ... -|...|+.....+.+. |.. +.
T Consensus 125 ~~el~~~~kal~---~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~ 201 (320)
T PLN02789 125 NKELEFTRKILS---LDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLEAMRDS 201 (320)
T ss_pred HHHHHHHHHHHH---hCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhccccccccccHHH
Confidence 678888888883 344 4788888889999999999999999987 333 3667888777666554 222 46
Q ss_pred HHHHHHHHhhcCCCCchhHHHHHHHHHhc----CCcchHHHHHHHHHh
Q 036237 504 GEYAANNLIKVAPDTIGCYVVLSNIYAAA----GQWDKVSEVREMMKK 547 (689)
Q Consensus 504 a~~~~~~~~~~~p~~~~~~~~L~~~~~~~----g~~~~A~~~~~~m~~ 547 (689)
++....++++++|+|..++.-+..+|... ++..+|.+...+..+
T Consensus 202 el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~ 249 (320)
T PLN02789 202 ELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLS 249 (320)
T ss_pred HHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhc
Confidence 77778899999999999999999999873 344556666655443
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.0077 Score=56.53 Aligned_cols=147 Identities=11% Similarity=0.019 Sum_probs=89.7
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHH----HHHHHHHhc
Q 036237 391 GLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYG----CLVDILCRT 466 (689)
Q Consensus 391 ~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~----~li~~~~~~ 466 (689)
.|+..|++++|++...... ..+.... =...+.+..+++-|.+.++.|.. +. +..+.+ +.|....-.
T Consensus 117 i~~~~~~~deAl~~~~~~~----~lE~~Al--~VqI~lk~~r~d~A~~~lk~mq~---id-ed~tLtQLA~awv~la~gg 186 (299)
T KOG3081|consen 117 IYMHDGDFDEALKALHLGE----NLEAAAL--NVQILLKMHRFDLAEKELKKMQQ---ID-EDATLTQLAQAWVKLATGG 186 (299)
T ss_pred HhhcCCChHHHHHHHhccc----hHHHHHH--HHHHHHHHHHHHHHHHHHHHHHc---cc-hHHHHHHHHHHHHHHhccc
Confidence 4555666666666655411 1111111 12223345566666666666652 22 222333 333333444
Q ss_pred CCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCcchHH-HHHH
Q 036237 467 GYLEEAKSTIESMP--MRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVS-EVRE 543 (689)
Q Consensus 467 g~~~~A~~~~~~~~--~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~~~~~g~~~~A~-~~~~ 543 (689)
+.+.+|.-+|++|. ..|+..+.+-...++...|++++|+.+++.++..+|++|.+...++-.--..|+-.++. +.+.
T Consensus 187 ek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l~ 266 (299)
T KOG3081|consen 187 EKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTERNLS 266 (299)
T ss_pred hhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHHHHH
Confidence 56777788887773 45777777888888888888888888888888888888888888877777777765553 4455
Q ss_pred HHHh
Q 036237 544 MMKK 547 (689)
Q Consensus 544 ~m~~ 547 (689)
+++.
T Consensus 267 QLk~ 270 (299)
T KOG3081|consen 267 QLKL 270 (299)
T ss_pred HHHh
Confidence 5554
|
|
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=97.93 E-value=1.5e-05 Score=50.47 Aligned_cols=33 Identities=24% Similarity=0.370 Sum_probs=27.7
Q ss_pred hhHHHHHHHHHhCCCchHHHHHHHHhHhCCCCC
Q 036237 88 VLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLP 120 (689)
Q Consensus 88 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p 120 (689)
.+||.+|.+|++.|+++.|.++|+.|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 578888888888888888888888888888776
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=97.92 E-value=0.00031 Score=72.01 Aligned_cols=126 Identities=13% Similarity=0.126 Sum_probs=103.3
Q ss_pred HHhHHHhhHHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccC
Q 036237 353 LGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKP-TAITFIGVLNACSHAG 431 (689)
Q Consensus 353 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g 431 (689)
...+|+..+...++++.|..+|+++.+.++..+..++..+...++-.+|++++++.... .| +...+..-...|.+.+
T Consensus 171 Lv~~Ll~~l~~t~~~~~ai~lle~L~~~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~--~p~d~~LL~~Qa~fLl~k~ 248 (395)
T PF09295_consen 171 LVDTLLKYLSLTQRYDEAIELLEKLRERDPEVAVLLARVYLLMNEEVEAIRLLNEALKE--NPQDSELLNLQAEFLLSKK 248 (395)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHhcCCcHHHHHHHHHHhcCcHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcC
Confidence 34456666677889999999999999888888888889998899999999999998864 34 4445555556788999
Q ss_pred cHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhCCCCC
Q 036237 432 LVNDGRRYFNMMINDYGIEPT-IEHYGCLVDILCRTGYLEEAKSTIESMPMRP 483 (689)
Q Consensus 432 ~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p 483 (689)
+.+.|+.+.+++. ...|+ ..+|..|+..|.+.|++++|+..++.+|.-|
T Consensus 249 ~~~lAL~iAk~av---~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm~~ 298 (395)
T PF09295_consen 249 KYELALEIAKKAV---ELSPSEFETWYQLAECYIQLGDFENALLALNSCPMLT 298 (395)
T ss_pred CHHHHHHHHHHHH---HhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcCCC
Confidence 9999999999998 45666 5799999999999999999999999997543
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=97.92 E-value=0.0002 Score=73.39 Aligned_cols=122 Identities=10% Similarity=0.075 Sum_probs=96.0
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHh
Q 036237 420 FIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESM-PMRP-NFVIWMSLLSGARN 497 (689)
Q Consensus 420 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~ 497 (689)
..+|+..+...++++.|..+|+++.+. .|+ ....|+..+...++-.+|.+++.+. ...| |...+......|..
T Consensus 172 v~~Ll~~l~~t~~~~~ai~lle~L~~~---~pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~ 246 (395)
T PF09295_consen 172 VDTLLKYLSLTQRYDEAIELLEKLRER---DPE--VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLS 246 (395)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHhc---CCc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Confidence 344566666778888888888888742 354 3445777777778888888888775 2233 56666666777889
Q ss_pred cCChHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCcchHHHHHHHHH
Q 036237 498 HGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMK 546 (689)
Q Consensus 498 ~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~~~~~g~~~~A~~~~~~m~ 546 (689)
.++++.|..++++++++.|++..++..|+.+|.+.|++++|.-.+..+.
T Consensus 247 k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 247 KKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred cCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 9999999999999999999999999999999999999999999888774
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=97.90 E-value=2.1e-05 Score=49.76 Aligned_cols=33 Identities=30% Similarity=0.521 Sum_probs=27.8
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC
Q 036237 383 GHWTAMIVGLGMHGMATQALDLFNKMCRMGMKP 415 (689)
Q Consensus 383 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 415 (689)
.+||.++.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 578888888888888888888888888888877
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.00041 Score=60.62 Aligned_cols=113 Identities=9% Similarity=0.036 Sum_probs=83.8
Q ss_pred HHHHHHHCCCCCCH-HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CC
Q 036237 404 LFNKMCRMGMKPTA-ITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESM-PM 481 (689)
Q Consensus 404 l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~ 481 (689)
.|++... ..|+. .....+...+...|++++|...|+.+.. ..+.+...+..+...|.+.|++++|...+++. ..
T Consensus 5 ~~~~~l~--~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~--~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 80 (135)
T TIGR02552 5 TLKDLLG--LDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAA--YDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAAL 80 (135)
T ss_pred hHHHHHc--CChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3444444 44543 3455566677788888888888888774 22335677888888888888888888888876 33
Q ss_pred CC-CHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCch
Q 036237 482 RP-NFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIG 520 (689)
Q Consensus 482 ~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 520 (689)
.| +...|..+...+...|+.+.|...+++++++.|++..
T Consensus 81 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 120 (135)
T TIGR02552 81 DPDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPE 120 (135)
T ss_pred CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccch
Confidence 34 5677888888899999999999999999999997754
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.0041 Score=57.84 Aligned_cols=165 Identities=13% Similarity=0.153 Sum_probs=115.4
Q ss_pred HHHhhHHhcCCHHHHHHHHHhcCCCChhhHHHH---HHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCc
Q 036237 356 LLIQMYSKCGSIESALTVFRAISKKKVGHWTAM---IVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGL 432 (689)
Q Consensus 356 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l---i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~ 432 (689)
.+.-+...+|+.+.|...++++..+-+.++... ..-+-..|++++|+++++...+.. +-|.+++..-+...-..|+
T Consensus 57 qV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK 135 (289)
T KOG3060|consen 57 QVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDD-PTDTVIRKRKLAILKAQGK 135 (289)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccC-cchhHHHHHHHHHHHHcCC
Confidence 344445566777777777777655333332222 122445788999999999988765 4456677776666667777
Q ss_pred HHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhc---CChHHHHHH
Q 036237 433 VNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMP-MRP-NFVIWMSLLSGARNH---GNKDIGEYA 507 (689)
Q Consensus 433 ~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~ll~~~~~~---g~~~~a~~~ 507 (689)
--+|++-+....+ .+.-|.+.|.-|.++|...|++++|.-.++++- +.| ++..+..+...+... .+.+.+.+.
T Consensus 136 ~l~aIk~ln~YL~--~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arky 213 (289)
T KOG3060|consen 136 NLEAIKELNEYLD--KFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKY 213 (289)
T ss_pred cHHHHHHHHHHHH--HhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 7788888877775 567788899999999999999999998888872 345 555666666655444 377888899
Q ss_pred HHHHhhcCCCCchhHH
Q 036237 508 ANNLIKVAPDTIGCYV 523 (689)
Q Consensus 508 ~~~~~~~~p~~~~~~~ 523 (689)
|.+++++.|.+.....
T Consensus 214 y~~alkl~~~~~ral~ 229 (289)
T KOG3060|consen 214 YERALKLNPKNLRALF 229 (289)
T ss_pred HHHHHHhChHhHHHHH
Confidence 9999999886544433
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.0025 Score=59.62 Aligned_cols=153 Identities=12% Similarity=0.073 Sum_probs=112.8
Q ss_pred HHHHHcCCHHHHHH-HHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCC
Q 036237 390 VGLGMHGMATQALD-LFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGY 468 (689)
Q Consensus 390 ~~~~~~g~~~~A~~-l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~ 468 (689)
..+..-++.++-+. +.+.+.......|......-...|.+.|++++|.+..... -+.+....=+..+.|..+
T Consensus 80 ~~~~~e~~~~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~-------~~lE~~Al~VqI~lk~~r 152 (299)
T KOG3081|consen 80 EYLELESNKKSILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLG-------ENLEAAALNVQILLKMHR 152 (299)
T ss_pred HHhhCcchhHHHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhcc-------chHHHHHHHHHHHHHHHH
Confidence 33333444444333 4444554444444444444456799999999999887652 334555555677888999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhc----CChHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCcchHHHHHHH
Q 036237 469 LEEAKSTIESMPMRPNFVIWMSLLSGARNH----GNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREM 544 (689)
Q Consensus 469 ~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~----g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~~~~~g~~~~A~~~~~~ 544 (689)
++-|...+++|..-.+..|.+.|..++.+. +.+..|.-+|+++-+.-|.++.+.+..+.++...|+|++|..+++.
T Consensus 153 ~d~A~~~lk~mq~ided~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~e 232 (299)
T KOG3081|consen 153 FDLAEKELKKMQQIDEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEE 232 (299)
T ss_pred HHHHHHHHHHHHccchHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHH
Confidence 999999999996445677788788877543 4688999999999998888999999999999999999999999999
Q ss_pred HHhCC
Q 036237 545 MKKRG 549 (689)
Q Consensus 545 m~~~~ 549 (689)
..++.
T Consensus 233 aL~kd 237 (299)
T KOG3081|consen 233 ALDKD 237 (299)
T ss_pred HHhcc
Confidence 88654
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=97.72 E-value=8.9e-05 Score=56.04 Aligned_cols=64 Identities=20% Similarity=0.229 Sum_probs=59.1
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcC-CcchHHHHHHHHHh
Q 036237 484 NFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAG-QWDKVSEVREMMKK 547 (689)
Q Consensus 484 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~~~~~g-~~~~A~~~~~~m~~ 547 (689)
++.+|..+...+...|+++.|+..|+++++++|+++.++..++.+|...| ++++|.+.+++..+
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 56789999999999999999999999999999999999999999999999 79999999988764
|
... |
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.00032 Score=56.36 Aligned_cols=92 Identities=18% Similarity=0.233 Sum_probs=71.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcC
Q 036237 456 YGCLVDILCRTGYLEEAKSTIESM-PMRP-NFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAG 533 (689)
Q Consensus 456 ~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~~~~~g 533 (689)
+..+...+...|++++|...+++. ...| +...+..+...+...|+++.|...+++.++..|.++..+..++.++...|
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLG 82 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHH
Confidence 455667777788888888888775 2333 34567777778888888888888888888888888778888888888889
Q ss_pred CcchHHHHHHHHHh
Q 036237 534 QWDKVSEVREMMKK 547 (689)
Q Consensus 534 ~~~~A~~~~~~m~~ 547 (689)
++++|...++...+
T Consensus 83 ~~~~a~~~~~~~~~ 96 (100)
T cd00189 83 KYEEALEAYEKALE 96 (100)
T ss_pred hHHHHHHHHHHHHc
Confidence 98888888877654
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.0041 Score=57.81 Aligned_cols=161 Identities=13% Similarity=0.137 Sum_probs=124.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHH-HHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHH
Q 036237 385 WTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGV-LNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDIL 463 (689)
Q Consensus 385 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~l-l~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~ 463 (689)
|..++-+....|+.+-|...++++... + |...-...+ ..-+...|.+++|.++++.+.++ -+.|..+|.-=+-+.
T Consensus 55 ~EqV~IAAld~~~~~lAq~C~~~L~~~-f-p~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~d--dpt~~v~~KRKlAil 130 (289)
T KOG3060|consen 55 YEQVFIAALDTGRDDLAQKCINQLRDR-F-PGSKRVGKLKAMLLEATGNYKEAIEYYESLLED--DPTDTVIRKRKLAIL 130 (289)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHh-C-CCChhHHHHHHHHHHHhhchhhHHHHHHHHhcc--CcchhHHHHHHHHHH
Confidence 444556667789999999999998875 2 554322221 12245578999999999999964 244567777777777
Q ss_pred HhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcC---CcchH
Q 036237 464 CRTGYLEEAKSTIESM--PMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAG---QWDKV 538 (689)
Q Consensus 464 ~~~g~~~~A~~~~~~~--~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~~~~~g---~~~~A 538 (689)
-..|+--+|++-+.+. .+..|...|.-|...|...|+++.|...+++++-+.|.++..+..|++.+.-.| +.+-|
T Consensus 131 ka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~a 210 (289)
T KOG3060|consen 131 KAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELA 210 (289)
T ss_pred HHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHH
Confidence 7788877888777665 355699999999999999999999999999999999999999999999987665 45667
Q ss_pred HHHHHHHHhCC
Q 036237 539 SEVREMMKKRG 549 (689)
Q Consensus 539 ~~~~~~m~~~~ 549 (689)
++++.+..+..
T Consensus 211 rkyy~~alkl~ 221 (289)
T KOG3060|consen 211 RKYYERALKLN 221 (289)
T ss_pred HHHHHHHHHhC
Confidence 77887776644
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.0012 Score=58.51 Aligned_cols=121 Identities=16% Similarity=0.171 Sum_probs=50.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC--hhHHHH
Q 036237 385 WTAMIVGLGMHGMATQALDLFNKMCRMGMKPTA----ITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPT--IEHYGC 458 (689)
Q Consensus 385 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~----~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~ 458 (689)
|..++..+. .++...+...++.+... .|+. .....+...+...|++++|...|+.+... ...|. ......
T Consensus 15 y~~~~~~~~-~~~~~~~~~~~~~l~~~--~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~-~~d~~l~~~a~l~ 90 (145)
T PF09976_consen 15 YEQALQALQ-AGDPAKAEAAAEQLAKD--YPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALAN-APDPELKPLARLR 90 (145)
T ss_pred HHHHHHHHH-CCCHHHHHHHHHHHHHH--CCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh-CCCHHHHHHHHHH
Confidence 444444442 55555555555555543 1221 12222334445555555555555555532 11111 112223
Q ss_pred HHHHHHhcCCHHHHHHHHHhCCCC-CCHHHHHHHHHHHHhcCChHHHHHHHH
Q 036237 459 LVDILCRTGYLEEAKSTIESMPMR-PNFVIWMSLLSGARNHGNKDIGEYAAN 509 (689)
Q Consensus 459 li~~~~~~g~~~~A~~~~~~~~~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~ 509 (689)
|...+...|++++|+..++..+.. .....+..+...+...|+.++|+..|+
T Consensus 91 LA~~~~~~~~~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~ 142 (145)
T PF09976_consen 91 LARILLQQGQYDEALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQ 142 (145)
T ss_pred HHHHHHHcCCHHHHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 444445555555555555443211 122233333333444444444444443
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.01 Score=66.95 Aligned_cols=79 Identities=16% Similarity=0.093 Sum_probs=40.5
Q ss_pred HHHHHHHHHcccchhhHHHHHHHHHHhCCccchhHHhHHHhhHHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCH
Q 036237 319 LVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMA 398 (689)
Q Consensus 319 ~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~ 398 (689)
+..+..+|.+.|..+++..+++.+++.. +.|+.+.|-+...|+.. ++++|.+++.+.. ..|...+++
T Consensus 119 l~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV-----------~~~i~~kq~ 185 (906)
T PRK14720 119 LRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYLKKAI-----------YRFIKKKQY 185 (906)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHHHHHH-----------HHHHhhhcc
Confidence 3334444444444444444444444444 34455555555555555 6666665554432 224445566
Q ss_pred HHHHHHHHHHHH
Q 036237 399 TQALDLFNKMCR 410 (689)
Q Consensus 399 ~~A~~l~~~m~~ 410 (689)
.++.++|.++..
T Consensus 186 ~~~~e~W~k~~~ 197 (906)
T PRK14720 186 VGIEEIWSKLVH 197 (906)
T ss_pred hHHHHHHHHHHh
Confidence 666666666655
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.0027 Score=56.21 Aligned_cols=114 Identities=18% Similarity=0.172 Sum_probs=58.7
Q ss_pred cCcHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhCC-CCCCH----HHHHHHHHHHHhcCChHH
Q 036237 430 AGLVNDGRRYFNMMINDYGIEP-TIEHYGCLVDILCRTGYLEEAKSTIESMP-MRPNF----VIWMSLLSGARNHGNKDI 503 (689)
Q Consensus 430 ~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~p~~----~~~~~ll~~~~~~g~~~~ 503 (689)
.++...+...++.+.++++-.| .....-.+...+...|++++|...|+... ..||. .....|...+...|++++
T Consensus 24 ~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~ 103 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDE 103 (145)
T ss_pred CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 4555556556666654322221 12333345566666666666666666542 11222 233344555556666666
Q ss_pred HHHHHHHHhhcCCCCchhHHHHHHHHHhcCCcchHHHHHHH
Q 036237 504 GEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREM 544 (689)
Q Consensus 504 a~~~~~~~~~~~p~~~~~~~~L~~~~~~~g~~~~A~~~~~~ 544 (689)
|+..++.. .-.+-.+..+..++++|.+.|++++|...|+.
T Consensus 104 Al~~L~~~-~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 104 ALATLQQI-PDEAFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHhc-cCcchHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 66666442 22222344555666666666666666666553
|
|
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.64 E-value=6.5e-05 Score=46.30 Aligned_cols=31 Identities=26% Similarity=0.494 Sum_probs=25.4
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHCCC
Q 036237 383 GHWTAMIVGLGMHGMATQALDLFNKMCRMGM 413 (689)
Q Consensus 383 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 413 (689)
++||+||++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 3688888888888888888888888887764
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.64 E-value=7.2e-05 Score=59.14 Aligned_cols=77 Identities=17% Similarity=0.207 Sum_probs=47.9
Q ss_pred CCHHHHHHHHHhCC-CCC---CHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCcchHHHHH
Q 036237 467 GYLEEAKSTIESMP-MRP---NFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVR 542 (689)
Q Consensus 467 g~~~~A~~~~~~~~-~~p---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~~~~~g~~~~A~~~~ 542 (689)
|++++|+.+++++- ..| +...|..+..++.+.|+++.|..++++ .+.+|.++.....++.+|.+.|++++|.+++
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~l 81 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKAL 81 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 45555555555541 112 344555566667777777777777776 5566666666667777788888888887777
Q ss_pred HH
Q 036237 543 EM 544 (689)
Q Consensus 543 ~~ 544 (689)
++
T Consensus 82 ~~ 83 (84)
T PF12895_consen 82 EK 83 (84)
T ss_dssp HH
T ss_pred hc
Confidence 64
|
|
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.63 E-value=6.3e-05 Score=46.37 Aligned_cols=31 Identities=35% Similarity=0.451 Sum_probs=25.5
Q ss_pred hhHHHHHHHHHhCCCchHHHHHHHHhHhCCC
Q 036237 88 VLYNLLIKCYVFNQRSHEALTLFCDLLDRFL 118 (689)
Q Consensus 88 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~ 118 (689)
++||++|++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 4788888888888888888888888887764
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.083 Score=53.11 Aligned_cols=106 Identities=15% Similarity=0.160 Sum_probs=70.4
Q ss_pred HHhhHHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHH
Q 036237 357 LIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDG 436 (689)
Q Consensus 357 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a 436 (689)
-+.-+...|+...|.++-.+..-|+-.-|-..+.+|+..++|++-.++... +-.++-|...+.+|...|...+|
T Consensus 183 Ti~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~~~~~eA 256 (319)
T PF04840_consen 183 TIRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKYGNKKEA 256 (319)
T ss_pred HHHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHCCCHHHH
Confidence 344455667777777777777777777777778888888877766554321 12336677777777777777777
Q ss_pred HHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC
Q 036237 437 RRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESM 479 (689)
Q Consensus 437 ~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 479 (689)
..+...+. +..-+++|.++|++.+|.+.--+.
T Consensus 257 ~~yI~k~~-----------~~~rv~~y~~~~~~~~A~~~A~~~ 288 (319)
T PF04840_consen 257 SKYIPKIP-----------DEERVEMYLKCGDYKEAAQEAFKE 288 (319)
T ss_pred HHHHHhCC-----------hHHHHHHHHHCCCHHHHHHHHHHc
Confidence 77665522 244567777777777776665544
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.0012 Score=56.03 Aligned_cols=98 Identities=15% Similarity=0.141 Sum_probs=48.3
Q ss_pred HHHHHhccCcHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhCC-CCCC----HHHHHHHHHHHH
Q 036237 423 VLNACSHAGLVNDGRRYFNMMINDYGIEP-TIEHYGCLVDILCRTGYLEEAKSTIESMP-MRPN----FVIWMSLLSGAR 496 (689)
Q Consensus 423 ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~p~----~~~~~~ll~~~~ 496 (689)
+...+...|++++|...|+.+...+.-.| ....+..+...+.+.|++++|...++.+. ..|+ ..++..+...+.
T Consensus 8 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~ 87 (119)
T TIGR02795 8 AALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMSLQ 87 (119)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHHHH
Confidence 33444444555555555555543211101 02233445555555555555555555431 1122 334555555666
Q ss_pred hcCChHHHHHHHHHHhhcCCCCch
Q 036237 497 NHGNKDIGEYAANNLIKVAPDTIG 520 (689)
Q Consensus 497 ~~g~~~~a~~~~~~~~~~~p~~~~ 520 (689)
..|+.+.|...++++++..|+++.
T Consensus 88 ~~~~~~~A~~~~~~~~~~~p~~~~ 111 (119)
T TIGR02795 88 ELGDKEKAKATLQQVIKRYPGSSA 111 (119)
T ss_pred HhCChHHHHHHHHHHHHHCcCChh
Confidence 666666666666666666666543
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.00091 Score=68.89 Aligned_cols=98 Identities=11% Similarity=0.104 Sum_probs=59.8
Q ss_pred HHHhccCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCh
Q 036237 425 NACSHAGLVNDGRRYFNMMINDYGIEPT-IEHYGCLVDILCRTGYLEEAKSTIESM-PMRP-NFVIWMSLLSGARNHGNK 501 (689)
Q Consensus 425 ~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~ 501 (689)
..+...|++++|+..|+.++. ..|+ ...|..+..+|.+.|++++|+..++++ ...| +...|..+..+|...|++
T Consensus 10 ~~a~~~~~~~~Ai~~~~~Al~---~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~ 86 (356)
T PLN03088 10 KEAFVDDDFALAVDLYTQAID---LDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEY 86 (356)
T ss_pred HHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCH
Confidence 444556677777777776663 2333 455666666666666666666666665 2333 444566666666666666
Q ss_pred HHHHHHHHHHhhcCCCCchhHHHH
Q 036237 502 DIGEYAANNLIKVAPDTIGCYVVL 525 (689)
Q Consensus 502 ~~a~~~~~~~~~~~p~~~~~~~~L 525 (689)
+.|+..++++++++|+++.....+
T Consensus 87 ~eA~~~~~~al~l~P~~~~~~~~l 110 (356)
T PLN03088 87 QTAKAALEKGASLAPGDSRFTKLI 110 (356)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHH
Confidence 666666666666666665554444
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.0012 Score=63.14 Aligned_cols=102 Identities=16% Similarity=0.130 Sum_probs=74.7
Q ss_pred HhccCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCH-HHHHHHHHHHHhcCChHH
Q 036237 427 CSHAGLVNDGRRYFNMMINDYGIEPT-IEHYGCLVDILCRTGYLEEAKSTIESM-PMRPNF-VIWMSLLSGARNHGNKDI 503 (689)
Q Consensus 427 ~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~-~~~~~ll~~~~~~g~~~~ 503 (689)
..+.+++.+|+..|...+ .+.|+ ...|..=..+|.+.|.++.|.+-.+.. .+.|.. .+|..|..+|...|++++
T Consensus 91 ~m~~~~Y~eAv~kY~~AI---~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~ 167 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAI---ELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEE 167 (304)
T ss_pred HHHhhhHHHHHHHHHHHH---hcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHH
Confidence 456677888888888777 45555 455556677788888888887776664 455654 488899999999999999
Q ss_pred HHHHHHHHhhcCCCCchhHHHHHHHHHh
Q 036237 504 GEYAANNLIKVAPDTIGCYVVLSNIYAA 531 (689)
Q Consensus 504 a~~~~~~~~~~~p~~~~~~~~L~~~~~~ 531 (689)
|++.|+++++++|++...-..|-.+=-+
T Consensus 168 A~~aykKaLeldP~Ne~~K~nL~~Ae~~ 195 (304)
T KOG0553|consen 168 AIEAYKKALELDPDNESYKSNLKIAEQK 195 (304)
T ss_pred HHHHHHhhhccCCCcHHHHHHHHHHHHH
Confidence 9999999999999887555555444333
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.0011 Score=56.33 Aligned_cols=96 Identities=16% Similarity=0.092 Sum_probs=81.7
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhCC-CCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCC---chhHHHH
Q 036237 454 EHYGCLVDILCRTGYLEEAKSTIESMP-MRPN----FVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDT---IGCYVVL 525 (689)
Q Consensus 454 ~~~~~li~~~~~~g~~~~A~~~~~~~~-~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~L 525 (689)
.++..++..+.+.|++++|.+.+.++. ..|+ ...+..+...+...|+++.|...++.++...|++ +.++..+
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~ 82 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKL 82 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHH
Confidence 456678888999999999999998872 2333 3467778889999999999999999999988875 5678899
Q ss_pred HHHHHhcCCcchHHHHHHHHHhCC
Q 036237 526 SNIYAAAGQWDKVSEVREMMKKRG 549 (689)
Q Consensus 526 ~~~~~~~g~~~~A~~~~~~m~~~~ 549 (689)
+.++.+.|++++|...++++.+..
T Consensus 83 ~~~~~~~~~~~~A~~~~~~~~~~~ 106 (119)
T TIGR02795 83 GMSLQELGDKEKAKATLQQVIKRY 106 (119)
T ss_pred HHHHHHhCChHHHHHHHHHHHHHC
Confidence 999999999999999999998754
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.0002 Score=53.27 Aligned_cols=57 Identities=21% Similarity=0.267 Sum_probs=45.9
Q ss_pred HHHHHHhcCChHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCcchHHHHHHHHHh
Q 036237 491 LLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKK 547 (689)
Q Consensus 491 ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~~~~~g~~~~A~~~~~~m~~ 547 (689)
+...+...|+++.|+..++++++..|+++.++..++.++...|++++|..+++++.+
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALE 59 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 455677788888888888888888888888888888888888888888888888765
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.0019 Score=64.03 Aligned_cols=265 Identities=12% Similarity=0.020 Sum_probs=164.9
Q ss_pred HHHHHHhcCCHHHHHHHHHhcCC---CChHHHHHHHHHHHHcCChHHHHHHHHHhccCCCCcC-hhhHHHHHHHHHcccc
Q 036237 256 MINGYMKAGDVDSACELFDDMEI---RDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPN-DATLVSALSAVAGLAV 331 (689)
Q Consensus 256 li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~~~ 331 (689)
..+.+-+..++.+|+..+....+ .+..-|..-...+...|++++|+--.++-.+. +|. ..+....-..+...++
T Consensus 55 ~gn~~yk~k~Y~nal~~yt~Ai~~~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~--kd~~~k~~~r~~~c~~a~~~ 132 (486)
T KOG0550|consen 55 EGNAFYKQKTYGNALKNYTFAIDMCPDNASYYSNRAATLMMLGRFEEALGDARQSVRL--KDGFSKGQLREGQCHLALSD 132 (486)
T ss_pred hcchHHHHhhHHHHHHHHHHHHHhCccchhhhchhHHHHHHHHhHhhcccchhhheec--CCCccccccchhhhhhhhHH
Confidence 34556666777777776665442 34555666667777777777777666555442 222 1233333444444444
Q ss_pred hhhHHHHHHHHHHhCCccchhHHhHHHhhHHhcCCHHHHHHHHHhcCC-----CChhhHHHH-HHHHHHcCCHHHHHHHH
Q 036237 332 LNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISK-----KKVGHWTAM-IVGLGMHGMATQALDLF 405 (689)
Q Consensus 332 ~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~l-i~~~~~~g~~~~A~~l~ 405 (689)
..+|.+.+.. ...+ ....|...++.... |...+|..+ ..++...|++++|...-
T Consensus 133 ~i~A~~~~~~---------~~~~-----------~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea 192 (486)
T KOG0550|consen 133 LIEAEEKLKS---------KQAY-----------KAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEA 192 (486)
T ss_pred HHHHHHHhhh---------hhhh-----------HHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHH
Confidence 4444444430 0000 11111112222111 222344444 34567788888888776
Q ss_pred HHHHHCCCCCCHHHHHHHH--HHHhccCcHHHHHHHHHHhHHhcCCCCChhHHH-------------HHHHHHHhcCCHH
Q 036237 406 NKMCRMGMKPTAITFIGVL--NACSHAGLVNDGRRYFNMMINDYGIEPTIEHYG-------------CLVDILCRTGYLE 470 (689)
Q Consensus 406 ~~m~~~g~~p~~~t~~~ll--~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~-------------~li~~~~~~g~~~ 470 (689)
-...+. .++. .+..++ .++-..++.+.|...|++.+ .+.|+-..-. .=.....+.|++.
T Consensus 193 ~~ilkl--d~~n-~~al~vrg~~~yy~~~~~ka~~hf~qal---~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~ 266 (486)
T KOG0550|consen 193 IDILKL--DATN-AEALYVRGLCLYYNDNADKAINHFQQAL---RLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYR 266 (486)
T ss_pred HHHHhc--ccch-hHHHHhcccccccccchHHHHHHHhhhh---ccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchh
Confidence 665542 2221 122222 23445678888888888877 4556532211 1123457889999
Q ss_pred HHHHHHHhC-C-----CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCcchHHHHHHH
Q 036237 471 EAKSTIESM-P-----MRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREM 544 (689)
Q Consensus 471 ~A~~~~~~~-~-----~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~~~~~g~~~~A~~~~~~ 544 (689)
+|.+.+.+. . .+|+...|........+.|+.++|+...+++++++|.-...|..-++++...++|++|.+-++.
T Consensus 267 ~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV~d~~~ 346 (486)
T KOG0550|consen 267 KAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAVEDYEK 346 (486)
T ss_pred HHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999886 3 4456677888888888999999999999999999999889999999999999999999999988
Q ss_pred HHhC
Q 036237 545 MKKR 548 (689)
Q Consensus 545 m~~~ 548 (689)
..+.
T Consensus 347 a~q~ 350 (486)
T KOG0550|consen 347 AMQL 350 (486)
T ss_pred HHhh
Confidence 7653
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.22 Score=54.91 Aligned_cols=188 Identities=12% Similarity=0.121 Sum_probs=115.6
Q ss_pred CCCHHHHHHHHhcccC--CCChhhHHHHHHHHHhCCCchHHHHHHHHhHhCCCCCCcccHHHHHHHHHhcCChHHHHHHH
Q 036237 68 INNLHYARSIFDRILQ--HPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIH 145 (689)
Q Consensus 68 ~g~~~~A~~~f~~~~~--~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~ 145 (689)
.|+.++|..+++.... ..|..|...+-..|.+.++.++|..+|++..+. .|+..-...+..++.+.+++.+-.++-
T Consensus 56 ~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa 133 (932)
T KOG2053|consen 56 LGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVHLYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAA 133 (932)
T ss_pred hcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7888888888877643 346667888888888999999999999988764 577777777788888888776655555
Q ss_pred HHHHHhCCCCchhHHHHHHHHHHhcCC----------hHHHHHHHhhCCCCC--eeh---HHHHHHHHHhCCChHHHHHH
Q 036237 146 GLVFKLGFGFDKFVLSSLVSMYAKFGE----------IDLGRRVFDAMDDKD--LVS---WNCLIDGYVKKGEVEVAMKL 210 (689)
Q Consensus 146 ~~~~~~g~~~~~~~~~~li~~~~~~g~----------~~~A~~~~~~m~~~~--~~~---~~~li~~~~~~g~~~~A~~~ 210 (689)
-++-+ .++-+.+.+=++++.+...-. +.-|.+.++.+.+.+ ..+ .-.-...+-..|++++|+++
T Consensus 134 ~~LyK-~~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~ 212 (932)
T KOG2053|consen 134 LQLYK-NFPKRAYYFWSVISLILQSIFSENELLDPILLALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEF 212 (932)
T ss_pred HHHHH-hCCcccchHHHHHHHHHHhccCCcccccchhHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHH
Confidence 44444 335555655555665554321 234555666555433 111 11112344456778888887
Q ss_pred Hhh-CC----CCCcchHHHHHHHHHhCCChHHHHHHHhhcCcCCcchHHHHHH
Q 036237 211 FDE-MP----DRDLFSWTCLVDGFSKCGKVEIAREIFYRMPNRNLVSWNAMIN 258 (689)
Q Consensus 211 ~~~-m~----~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~ 258 (689)
+.. .. ..+...-+--+..+...+++.+-.++-.++...+..-|...++
T Consensus 213 l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~~Ddy~~~~~ 265 (932)
T KOG2053|consen 213 LAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKGNDDYKIYTD 265 (932)
T ss_pred HHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhCCcchHHHHH
Confidence 732 21 2233444455666777777777666666665543332444333
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.0039 Score=67.17 Aligned_cols=61 Identities=21% Similarity=0.181 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCcchHHHHHHHHH
Q 036237 485 FVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMK 546 (689)
Q Consensus 485 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~~~~~g~~~~A~~~~~~m~ 546 (689)
+..|.++.-.....|++++|...++++++++| +...|..++.+|...|+.++|.+.+++..
T Consensus 420 ~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~ 480 (517)
T PRK10153 420 PRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAF 480 (517)
T ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34444444444444555555555555555555 34455555555555555555555555443
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.25 Score=52.70 Aligned_cols=117 Identities=15% Similarity=0.072 Sum_probs=56.5
Q ss_pred CCchhHHHHHHHHHHhcCChHHHHHHHhhCCC-CCeehHHHH---H-------HHHHhCCChHHHHHHHhhCCCCCcchH
Q 036237 154 GFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDD-KDLVSWNCL---I-------DGYVKKGEVEVAMKLFDEMPDRDLFSW 222 (689)
Q Consensus 154 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~~~~~~~~l---i-------~~~~~~g~~~~A~~~~~~m~~~d~~~~ 222 (689)
.|.+..|..|.....+.-+++.|+..|-+... +.+..-..| . ..-+--|.+++|.++|-+|.++|.
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~~~g~feeaek~yld~drrDL--- 765 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISAFYGEFEEAEKLYLDADRRDL--- 765 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhhhhcchhHhhhhhhccchhhh---
Confidence 46777787777777666677777777665542 111100000 0 011112666666666666655543
Q ss_pred HHHHHHHHhCCChHHHHHHHhhcCcCC-----cchHHHHHHHHHhcCCHHHHHHHHHh
Q 036237 223 TCLVDGFSKCGKVEIAREIFYRMPNRN-----LVSWNAMINGYMKAGDVDSACELFDD 275 (689)
Q Consensus 223 ~~li~~~~~~g~~~~A~~~~~~~~~~~-----~~~~~~li~~~~~~g~~~~A~~~~~~ 275 (689)
.+..+.+.|++-...++++.--..+ ...++.+.+.+.....+++|.+.+..
T Consensus 766 --Aielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~ 821 (1189)
T KOG2041|consen 766 --AIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSY 821 (1189)
T ss_pred --hHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 2333444455554444444322110 23444444444444444444444433
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.0016 Score=59.56 Aligned_cols=81 Identities=15% Similarity=0.067 Sum_probs=60.8
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchhHHHHHHH
Q 036237 454 EHYGCLVDILCRTGYLEEAKSTIESM-PMRPN----FVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNI 528 (689)
Q Consensus 454 ~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~ 528 (689)
..+..+...|.+.|++++|...+++. ...|+ ...|..+...+...|+++.|+..++++++..|+++..+..++.+
T Consensus 36 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 115 (172)
T PRK02603 36 FVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVI 115 (172)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHH
Confidence 44566666677777777777777664 11122 35777888888888999999999999999999888888888888
Q ss_pred HHhcCC
Q 036237 529 YAAAGQ 534 (689)
Q Consensus 529 ~~~~g~ 534 (689)
|...|+
T Consensus 116 ~~~~g~ 121 (172)
T PRK02603 116 YHKRGE 121 (172)
T ss_pred HHHcCC
Confidence 888776
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.0015 Score=59.61 Aligned_cols=93 Identities=10% Similarity=-0.092 Sum_probs=73.4
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchhHHHHHH
Q 036237 453 IEHYGCLVDILCRTGYLEEAKSTIESM-PMRPN----FVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSN 527 (689)
Q Consensus 453 ~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~ 527 (689)
...|..++..+...|++++|...+++. ...|+ ..+|..+...+...|++++|+..+++++++.|.....+..++.
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~ 114 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAV 114 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHH
Confidence 455666777777888888888888775 22222 3478889999999999999999999999999998888888888
Q ss_pred HHH-------hcCCcchHHHHHHHH
Q 036237 528 IYA-------AAGQWDKVSEVREMM 545 (689)
Q Consensus 528 ~~~-------~~g~~~~A~~~~~~m 545 (689)
+|. ..|++++|...+++.
T Consensus 115 i~~~~~~~~~~~g~~~~A~~~~~~a 139 (168)
T CHL00033 115 ICHYRGEQAIEQGDSEIAEAWFDQA 139 (168)
T ss_pred HHHHhhHHHHHcccHHHHHHHHHHH
Confidence 888 788888777666654
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.028 Score=56.07 Aligned_cols=124 Identities=12% Similarity=0.184 Sum_probs=67.6
Q ss_pred HHhhHHhc-CCHHHHHHHHHhcCC-----CC----hhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-----HH-HH
Q 036237 357 LIQMYSKC-GSIESALTVFRAISK-----KK----VGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPT-----AI-TF 420 (689)
Q Consensus 357 li~~~~~~-g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-----~~-t~ 420 (689)
+...|-.. |++++|.+.|++..+ .. ...+..+...+.+.|++++|+++|++....-...+ .. .|
T Consensus 120 lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~ 199 (282)
T PF14938_consen 120 LAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYF 199 (282)
T ss_dssp HHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHH
Confidence 44455555 677777776665542 11 12455667778888888888888888776432221 11 22
Q ss_pred HHHHHHHhccCcHHHHHHHHHHhHHh-cCCCCC--hhHHHHHHHHHHh--cCCHHHHHHHHHhCC
Q 036237 421 IGVLNACSHAGLVNDGRRYFNMMIND-YGIEPT--IEHYGCLVDILCR--TGYLEEAKSTIESMP 480 (689)
Q Consensus 421 ~~ll~a~~~~g~~~~a~~~~~~~~~~-~~~~p~--~~~~~~li~~~~~--~g~~~~A~~~~~~~~ 480 (689)
...+-.+...|+...|.+.++..... .++..+ ......|++++-. ...+++|..-|+.+.
T Consensus 200 l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D~e~f~~av~~~d~~~ 264 (282)
T PF14938_consen 200 LKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEEGDVEAFTEAVAEYDSIS 264 (282)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT-CCCHHHHCHHHTTSS
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHcccC
Confidence 33333555667888888888776621 122222 2344455555543 345666776676664
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.0033 Score=64.80 Aligned_cols=100 Identities=16% Similarity=0.162 Sum_probs=80.4
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHh
Q 036237 388 MIVGLGMHGMATQALDLFNKMCRMGMKPT-AITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPT-IEHYGCLVDILCR 465 (689)
Q Consensus 388 li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~ 465 (689)
....+...|++++|++.|++.++. .|+ ...|..+..++...|++++|+..++.++. +.|+ ...|..+..+|..
T Consensus 8 ~a~~a~~~~~~~~Ai~~~~~Al~~--~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~---l~P~~~~a~~~lg~~~~~ 82 (356)
T PLN03088 8 KAKEAFVDDDFALAVDLYTQAIDL--DPNNAELYADRAQANIKLGNFTEAVADANKAIE---LDPSLAKAYLRKGTACMK 82 (356)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCcCCHHHHHHHHHHHHH
Confidence 355677889999999999999984 454 55777888899999999999999999983 4554 6788899999999
Q ss_pred cCCHHHHHHHHHhC-CCCCCHHHHHHHH
Q 036237 466 TGYLEEAKSTIESM-PMRPNFVIWMSLL 492 (689)
Q Consensus 466 ~g~~~~A~~~~~~~-~~~p~~~~~~~ll 492 (689)
.|++++|...|++. ...|+.......+
T Consensus 83 lg~~~eA~~~~~~al~l~P~~~~~~~~l 110 (356)
T PLN03088 83 LEEYQTAKAALEKGASLAPGDSRFTKLI 110 (356)
T ss_pred hCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 99999999999986 4556544444343
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.00055 Score=65.29 Aligned_cols=88 Identities=16% Similarity=0.204 Sum_probs=78.8
Q ss_pred HHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCcch
Q 036237 460 VDILCRTGYLEEAKSTIESM-PMRP-NFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDK 537 (689)
Q Consensus 460 i~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~~~~~g~~~~ 537 (689)
..-+.+.+++++|...+.++ .+.| |++.|..-..+|.+.|.++.|++..+.++.++|....+|..|+.+|...|++++
T Consensus 88 GN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~ 167 (304)
T KOG0553|consen 88 GNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEE 167 (304)
T ss_pred HHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHH
Confidence 34567889999999999886 5555 778888999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHh
Q 036237 538 VSEVREMMKK 547 (689)
Q Consensus 538 A~~~~~~m~~ 547 (689)
|.+.|++..+
T Consensus 168 A~~aykKaLe 177 (304)
T KOG0553|consen 168 AIEAYKKALE 177 (304)
T ss_pred HHHHHHhhhc
Confidence 9999887654
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.0066 Score=55.50 Aligned_cols=130 Identities=13% Similarity=0.198 Sum_probs=89.1
Q ss_pred ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC-hhHHH
Q 036237 381 KVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPT--AITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPT-IEHYG 457 (689)
Q Consensus 381 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~--~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~ 457 (689)
....+..+...|...|++++|+..|++.......|+ ...+..+...+.+.|++++|...+++... ..|+ ...+.
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~ 110 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALE---LNPKQPSALN 110 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCcccHHHHH
Confidence 344677778888888899999988888876443332 34677777788888888888888888873 3343 55666
Q ss_pred HHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCC
Q 036237 458 CLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQ 534 (689)
Q Consensus 458 ~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~~~~~g~ 534 (689)
.+..+|...|+...+..-++.. ...++.|...++++++.+|++ |..++..+...|+
T Consensus 111 ~lg~~~~~~g~~~~a~~~~~~A------------------~~~~~~A~~~~~~a~~~~p~~---~~~~~~~~~~~~~ 166 (172)
T PRK02603 111 NIAVIYHKRGEKAEEAGDQDEA------------------EALFDKAAEYWKQAIRLAPNN---YIEAQNWLKTTGR 166 (172)
T ss_pred HHHHHHHHcCChHhHhhCHHHH------------------HHHHHHHHHHHHHHHhhCchh---HHHHHHHHHhcCc
Confidence 6777777777766655433321 112677888999999999875 5555555555544
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.0051 Score=53.92 Aligned_cols=89 Identities=10% Similarity=-0.055 Sum_probs=76.8
Q ss_pred HHHHHHhcCCHHHHHHHHHhCC-C-CCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCcc
Q 036237 459 LVDILCRTGYLEEAKSTIESMP-M-RPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWD 536 (689)
Q Consensus 459 li~~~~~~g~~~~A~~~~~~~~-~-~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~~~~~g~~~ 536 (689)
..--+-..|++++|..+|.-+- . .-|..-|..|...|...++++.|+..|..+..+.++||..+...+.+|...|+.+
T Consensus 43 ~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~~ 122 (165)
T PRK15331 43 HAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKAA 122 (165)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCHH
Confidence 3444567899999999988752 2 2366778999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHh
Q 036237 537 KVSEVREMMKK 547 (689)
Q Consensus 537 ~A~~~~~~m~~ 547 (689)
.|+..|+...+
T Consensus 123 ~A~~~f~~a~~ 133 (165)
T PRK15331 123 KARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHHh
Confidence 99999998776
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.003 Score=50.45 Aligned_cols=89 Identities=17% Similarity=0.123 Sum_probs=43.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHH
Q 036237 385 WTAMIVGLGMHGMATQALDLFNKMCRMGMKPT-AITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDIL 463 (689)
Q Consensus 385 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~ 463 (689)
|..+...+...|++++|+..|++..+. .|+ ...+..+...+...+++++|.+.++..... .+.+...+..+...+
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~ 78 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALEL--DPDNADAYYNLAAAYYKLGKYEEALEDYEKALEL--DPDNAKAYYNLGLAY 78 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--CCcchhHHHHHHHHH
Confidence 445555566666666666666666553 222 234444555555555566666555555421 111223334444444
Q ss_pred HhcCCHHHHHHHHH
Q 036237 464 CRTGYLEEAKSTIE 477 (689)
Q Consensus 464 ~~~g~~~~A~~~~~ 477 (689)
...|++++|...+.
T Consensus 79 ~~~~~~~~a~~~~~ 92 (100)
T cd00189 79 YKLGKYEEALEAYE 92 (100)
T ss_pred HHHHhHHHHHHHHH
Confidence 44444444444443
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.00034 Score=52.62 Aligned_cols=52 Identities=23% Similarity=0.352 Sum_probs=42.2
Q ss_pred HhcCChHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCcchHHHHHHHHHh
Q 036237 496 RNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKK 547 (689)
Q Consensus 496 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~~~~~g~~~~A~~~~~~m~~ 547 (689)
...|++++|+..++++++.+|+++.+...|+.+|.+.|++++|.++++++..
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~ 53 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLK 53 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHG
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4568888888888888888888888888888888888888888888876654
|
... |
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.0012 Score=49.03 Aligned_cols=61 Identities=23% Similarity=0.256 Sum_probs=47.7
Q ss_pred HHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCc
Q 036237 459 LVDILCRTGYLEEAKSTIESM-PMRP-NFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTI 519 (689)
Q Consensus 459 li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 519 (689)
+...+.+.|++++|...|++. ...| +...|..+...+...|++++|...++++++..|++|
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 456677888888888888876 3445 556888888899999999999999999999999864
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.016 Score=52.70 Aligned_cols=80 Identities=11% Similarity=0.113 Sum_probs=55.1
Q ss_pred hhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC-hhHHHH
Q 036237 382 VGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPT--AITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPT-IEHYGC 458 (689)
Q Consensus 382 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~--~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~ 458 (689)
...|..++..+...|++++|+..|++.......|. ..++..+...+.+.|++++|+..++.... +.|+ ...+..
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~---~~~~~~~~~~~ 111 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALE---RNPFLPQALNN 111 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCcCcHHHHHH
Confidence 44667777778888888888888888876432222 23677777888888888888888888773 2343 445555
Q ss_pred HHHHHH
Q 036237 459 LVDILC 464 (689)
Q Consensus 459 li~~~~ 464 (689)
+...|.
T Consensus 112 la~i~~ 117 (168)
T CHL00033 112 MAVICH 117 (168)
T ss_pred HHHHHH
Confidence 555555
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.0014 Score=64.71 Aligned_cols=256 Identities=13% Similarity=0.034 Sum_probs=149.3
Q ss_pred HHHcCChHHHHHHHHHhccCCCC---cChhhHHHHHHHHHcccchhhHHHHHHHHH--Hh--CCc-cchhHHhHHHhhHH
Q 036237 291 YELNGRFMEALELLETMLIGDVL---PNDATLVSALSAVAGLAVLNKGRWMHSYIV--KN--GFV-VDGVLGTLLIQMYS 362 (689)
Q Consensus 291 ~~~~g~~~~A~~~~~~m~~~g~~---p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~--~~--g~~-~~~~~~~~li~~~~ 362 (689)
+++.|+.+..+.+|+..++.|-. .=+..|..+-++|..++++++|.++|..=+ .. |-. ........|.+.+-
T Consensus 27 Lck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNtlK 106 (639)
T KOG1130|consen 27 LCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNTLK 106 (639)
T ss_pred HHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccchhh
Confidence 56667777777777777665521 112345555566666777777777654321 10 000 01111112333333
Q ss_pred hcCCHHHHHHHHHhcCC-------C--ChhhHHHHHHHHHHcCC--------------------HHHHHHHHHHHH----
Q 036237 363 KCGSIESALTVFRAISK-------K--KVGHWTAMIVGLGMHGM--------------------ATQALDLFNKMC---- 409 (689)
Q Consensus 363 ~~g~~~~A~~~~~~~~~-------~--~~~~~~~li~~~~~~g~--------------------~~~A~~l~~~m~---- 409 (689)
-.|.+++|.-.-.+-.. + ....+..+...|...|+ ++.|.+.|.+-.
T Consensus 107 v~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l~~ 186 (639)
T KOG1130|consen 107 VKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLELSE 186 (639)
T ss_pred hhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555433221110 0 11234444555544331 223444444321
Q ss_pred HCCCC-CCHHHHHHHHHHHhccCcHHHHHHHHHH---hHHhcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhC-----
Q 036237 410 RMGMK-PTAITFIGVLNACSHAGLVNDGRRYFNM---MINDYGIEPT-IEHYGCLVDILCRTGYLEEAKSTIESM----- 479 (689)
Q Consensus 410 ~~g~~-p~~~t~~~ll~a~~~~g~~~~a~~~~~~---~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~----- 479 (689)
+.|-. .....|..|.+.|.-.|++++|+..++. +.+++|-... ...+..|...+.-.|+++.|.+.++..
T Consensus 187 ~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAi 266 (639)
T KOG1130|consen 187 KLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAI 266 (639)
T ss_pred HhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHH
Confidence 11200 1123566666667778999999988764 2334554433 467888999999999999999988764
Q ss_pred --CCC-CCHHHHHHHHHHHHhcCChHHHHHHHHHHhhc----C--CCCchhHHHHHHHHHhcCCcchHHHHHHHHH
Q 036237 480 --PMR-PNFVIWMSLLSGARNHGNKDIGEYAANNLIKV----A--PDTIGCYVVLSNIYAAAGQWDKVSEVREMMK 546 (689)
Q Consensus 480 --~~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~----~--p~~~~~~~~L~~~~~~~g~~~~A~~~~~~m~ 546 (689)
+.+ ....+..+|.++|....+++.|+..+.+-+.+ + .....++..|+++|...|..++|..+.+.-.
T Consensus 267 elg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl 342 (639)
T KOG1130|consen 267 ELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHL 342 (639)
T ss_pred HhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 211 24556778888998888999999888765542 2 1235689999999999999999988776554
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.39 Score=50.02 Aligned_cols=437 Identities=11% Similarity=0.087 Sum_probs=239.1
Q ss_pred CCChhhHHHHHHHHHhCCCchHHHHHHHHhHhCCCCCC-cccHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHH
Q 036237 84 HPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPD-NFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSS 162 (689)
Q Consensus 84 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ 162 (689)
+-|+.+|+.||+-+-.. ..+++.+.|++|.. +.|+ ...|..-+..-.+..+++....+|.+.+..-+ +...|..
T Consensus 17 P~di~sw~~lire~qt~-~~~~~R~~YEq~~~--~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvL--nlDLW~l 91 (656)
T KOG1914|consen 17 PYDIDSWSQLIREAQTQ-PIDKVRETYEQLVN--VFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKVL--NLDLWKL 91 (656)
T ss_pred CccHHHHHHHHHHHccC-CHHHHHHHHHHHhc--cCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHh--hHhHHHH
Confidence 35888999999977655 89999999999985 4554 56788888888899999999999999887743 4556665
Q ss_pred HHHHHHh-cCChHHHH----HHHhh------CCCCCeehHHHHHHH---------HHhCCChHHHHHHHhhCCCCCcchH
Q 036237 163 LVSMYAK-FGEIDLGR----RVFDA------MDDKDLVSWNCLIDG---------YVKKGEVEVAMKLFDEMPDRDLFSW 222 (689)
Q Consensus 163 li~~~~~-~g~~~~A~----~~~~~------m~~~~~~~~~~li~~---------~~~~g~~~~A~~~~~~m~~~d~~~~ 222 (689)
-++---+ .|+...++ +.|+- |.-.+-..|+..+.- |..+.+++...++++++........
T Consensus 92 Yl~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~nl 171 (656)
T KOG1914|consen 92 YLSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMHNL 171 (656)
T ss_pred HHHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCccccH
Confidence 5553322 23333322 22221 112234446655532 3333455556666666654221111
Q ss_pred HHHHHHHH---hCCChHHHHHHHhhcCcCCcchHHHHHHHHHhcCCHHHHHHHHHhcC------CC--------------
Q 036237 223 TCLVDGFS---KCGKVEIAREIFYRMPNRNLVSWNAMINGYMKAGDVDSACELFDDME------IR-------------- 279 (689)
Q Consensus 223 ~~li~~~~---~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~------~~-------------- 279 (689)
.-|-+-|. +.=+.-.|.++..+ +...+..|.++++++. .+
T Consensus 172 EkLW~DY~~fE~~IN~~tarK~i~e-----------------~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~ 234 (656)
T KOG1914|consen 172 EKLWKDYEAFEQEINIITARKFIGE-----------------RSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEI 234 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh-----------------hCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHH
Confidence 11111110 00000111111110 1112233333333321 00
Q ss_pred -ChHHHHHHHHHHHHcCCh--------HHHHHHHHHh-ccCCCCcChhh-HHHHH----HHHHcccc-------hhhHHH
Q 036237 280 -DLITWNSMIAGYELNGRF--------MEALELLETM-LIGDVLPNDAT-LVSAL----SAVAGLAV-------LNKGRW 337 (689)
Q Consensus 280 -~~~~~~~li~~~~~~g~~--------~~A~~~~~~m-~~~g~~p~~~t-~~~ll----~a~~~~~~-------~~~a~~ 337 (689)
-+..|-.+|.-=..++-- ....-.+++. +-.+..|+..- +...+ ..+...|+ .+++..
T Consensus 235 ~qv~~W~n~I~wEksNpL~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~ 314 (656)
T KOG1914|consen 235 QQVELWKNWIKWEKSNPLRTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAAS 314 (656)
T ss_pred HHHHHHHHHHHHHhcCCcccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHH
Confidence 011233333221111100 0011111111 11122222111 00001 11222232 334555
Q ss_pred HHHHHHHhCCccchhHHhHHHhhHHhcC---CHHHHHHHHHhcCC----CChhhHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 036237 338 MHSYIVKNGFVVDGVLGTLLIQMYSKCG---SIESALTVFRAISK----KKVGHWTAMIVGLGMHGMATQALDLFNKMCR 410 (689)
Q Consensus 338 i~~~~~~~g~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 410 (689)
+++..+..-...+..+|..+.+---..- ..+.....++++.. .-..+|-..+..-.+..-...|..+|.+..+
T Consensus 315 ~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~ 394 (656)
T KOG1914|consen 315 IYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKARE 394 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhh
Confidence 5555554433334445544433211111 13334444444433 2234677777777777778999999999999
Q ss_pred CCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCC---CCC--C
Q 036237 411 MGMKP-TAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMP---MRP--N 484 (689)
Q Consensus 411 ~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~p--~ 484 (689)
.+..+ +.....+++.-++ .++..-|.++|+.-.+.+| -++.--...++-+...++-..|..+|++.- ..| .
T Consensus 395 ~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFeLGLkkf~--d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks 471 (656)
T KOG1914|consen 395 DKRTRHHVFVAAALMEYYC-SKDKETAFRIFELGLKKFG--DSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKS 471 (656)
T ss_pred ccCCcchhhHHHHHHHHHh-cCChhHHHHHHHHHHHhcC--CChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhh
Confidence 98888 4556777776655 5788999999998876544 334555678899999999999999999872 233 3
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCC----chhHHHHHHHHHhcCCcchHHHHHHHH
Q 036237 485 FVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDT----IGCYVVLSNIYAAAGQWDKVSEVREMM 545 (689)
Q Consensus 485 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~----~~~~~~L~~~~~~~g~~~~A~~~~~~m 545 (689)
..+|..++.--..-||+....++-++....-|.+ ...-..+.+.|.-.+.+..-..-++.|
T Consensus 472 ~~Iw~r~l~yES~vGdL~si~~lekR~~~af~~~qe~~~~~~~~~v~RY~~~d~~~c~~~elk~l 536 (656)
T KOG1914|consen 472 KEIWDRMLEYESNVGDLNSILKLEKRRFTAFPADQEYEGNETALFVDRYGILDLYPCSLDELKFL 536 (656)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHHhcchhhcCCCChHHHHHHHHhhcccccccHHHHHhh
Confidence 4699999999999999999999988877655521 113345556666666665544444444
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.42 Score=51.12 Aligned_cols=199 Identities=15% Similarity=0.083 Sum_probs=127.8
Q ss_pred CCCcccHHHHHHHHHhcCChHHHHHHHHHHHHh-CCC--------CchhHHHHHHHHHHhcCChHHHHHHHhhCCCCCee
Q 036237 119 LPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKL-GFG--------FDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLV 189 (689)
Q Consensus 119 ~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~-g~~--------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 189 (689)
.|.+..|..+.......-.++.|...|-+.... |++ .+.....+=|.+| .|++++|++++-+|..+|..
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~~--~g~feeaek~yld~drrDLA 766 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISAF--YGEFEEAEKLYLDADRRDLA 766 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhhh--hcchhHhhhhhhccchhhhh
Confidence 466677777776666666666666665443221 111 1111222223333 48999999999999888753
Q ss_pred hHHHHHHHHHhCCChHHHHHHHhhCCCC--C---cchHHHHHHHHHhCCChHHHHHHHhhcCcCCcchHHHHHHHHHhcC
Q 036237 190 SWNCLIDGYVKKGEVEVAMKLFDEMPDR--D---LFSWTCLVDGFSKCGKVEIAREIFYRMPNRNLVSWNAMINGYMKAG 264 (689)
Q Consensus 190 ~~~~li~~~~~~g~~~~A~~~~~~m~~~--d---~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g 264 (689)
|..+.+.|++-...++++.-... | ...|+.+...++....+++|.+.|..... ....+..|.+..
T Consensus 767 -----ielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~-----~e~~~ecly~le 836 (1189)
T KOG2041|consen 767 -----IELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGD-----TENQIECLYRLE 836 (1189)
T ss_pred -----HHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-----hHhHHHHHHHHH
Confidence 56777788888888887764332 1 24788888888888889999888876532 234667777777
Q ss_pred CHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHhccCCCCcChhhHHHHHHHHHcccchhhHHHHH
Q 036237 265 DVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMH 339 (689)
Q Consensus 265 ~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~ 339 (689)
++++-+.+-..+++ |....-.|...+...|.-++|.+.|-+-- .| ...+.+|..+.++.+|.++-
T Consensus 837 ~f~~LE~la~~Lpe-~s~llp~~a~mf~svGMC~qAV~a~Lr~s----~p-----kaAv~tCv~LnQW~~avela 901 (1189)
T KOG2041|consen 837 LFGELEVLARTLPE-DSELLPVMADMFTSVGMCDQAVEAYLRRS----LP-----KAAVHTCVELNQWGEAVELA 901 (1189)
T ss_pred hhhhHHHHHHhcCc-ccchHHHHHHHHHhhchHHHHHHHHHhcc----Cc-----HHHHHHHHHHHHHHHHHHHH
Confidence 77777777666665 34445567777888888888877664432 12 23455666666666665543
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.00027 Score=44.36 Aligned_cols=32 Identities=22% Similarity=0.512 Sum_probs=30.4
Q ss_pred HHHHhhcCCCCchhHHHHHHHHHhcCCcchHH
Q 036237 508 ANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVS 539 (689)
Q Consensus 508 ~~~~~~~~p~~~~~~~~L~~~~~~~g~~~~A~ 539 (689)
++++++++|+++.+|..|+.+|...|++++|+
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 68899999999999999999999999999986
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.0011 Score=50.73 Aligned_cols=57 Identities=9% Similarity=0.056 Sum_probs=48.6
Q ss_pred HHHHhcCChHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCcchHHHHHHHHHhCC
Q 036237 493 SGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRG 549 (689)
Q Consensus 493 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~~~~~g~~~~A~~~~~~m~~~~ 549 (689)
..+.+.++++.|..+++++++++|+++..+...+.+|.+.|++++|.+.++...+.+
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~ 59 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELS 59 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHC
Confidence 457788888999999999999999888888889999999999999999888887643
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.097 Score=49.15 Aligned_cols=230 Identities=10% Similarity=0.027 Sum_probs=143.0
Q ss_pred ehHHHHHHHHHhCCChHHHHHHHhhCCC---CCcchHHHHHHHH-HhCCC-hHHHHH-HHhhcCcCCcchHHHHHHHHHh
Q 036237 189 VSWNCLIDGYVKKGEVEVAMKLFDEMPD---RDLFSWTCLVDGF-SKCGK-VEIARE-IFYRMPNRNLVSWNAMINGYMK 262 (689)
Q Consensus 189 ~~~~~li~~~~~~g~~~~A~~~~~~m~~---~d~~~~~~li~~~-~~~g~-~~~A~~-~~~~~~~~~~~~~~~li~~~~~ 262 (689)
..|+.-+..+++....++|..-++...+ ||.. |...=..| .+.|. +.-+.+ ++..+...-...+++|+..|.-
T Consensus 70 q~wT~r~~~l~kLR~~~~a~~EL~~f~~lD~pdl~-Yey~p~iyp~rrGSmVPFsmR~lhAe~~~~lgnpqesLdRl~~L 148 (366)
T KOG2796|consen 70 QLWTVRLALLVKLRLFQNAEMELEPFGNLDQPDLY-YEYYPHVYPGRRGSMVPFSMRILHAELQQYLGNPQESLDRLHKL 148 (366)
T ss_pred HHHHHHHHHHHHHhhhHHHHhhhhhhccCCCccee-eeeccccCCCCcCccccHHHHHHHHHHHHhcCCcHHHHHHHHHH
Confidence 4577778888888888888665555433 3221 00000000 01111 111222 2333333345566777777776
Q ss_pred cCCHHHHHHHHHhcCCC--Ch--------HHHHHHHHHHHHcCChHHHHHHHHHhccCCCCcChhhHHHHHHHHHcccch
Q 036237 263 AGDVDSACELFDDMEIR--DL--------ITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVL 332 (689)
Q Consensus 263 ~g~~~~A~~~~~~~~~~--~~--------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~ 332 (689)
..-+++-...|+.=..+ .+ ...+.++..+.-.|.+.-.+.++++..+...+.+......+.+.-.+.|+.
T Consensus 149 ~~~V~~ii~~~e~~~~~ESsv~lW~KRl~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~ 228 (366)
T KOG2796|consen 149 KTVVSKILANLEQGLAEESSIRLWRKRLGRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDI 228 (366)
T ss_pred HHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccH
Confidence 66666666666553322 22 334566777777788888888888888876666777777888888889999
Q ss_pred hhHHHHHHHHHHhCCccch-----hHHhHHHhhHHhcCCHHHHHHHHHhcCC---CChhhHHHHHHHHHHcCCHHHHHHH
Q 036237 333 NKGRWMHSYIVKNGFVVDG-----VLGTLLIQMYSKCGSIESALTVFRAISK---KKVGHWTAMIVGLGMHGMATQALDL 404 (689)
Q Consensus 333 ~~a~~i~~~~~~~g~~~~~-----~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l 404 (689)
+.|...++...+..-..+. .+.......|.-.+++..|...|+++.. .++..-|.-.-+..-.|+..+|++.
T Consensus 229 k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~ 308 (366)
T KOG2796|consen 229 KTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQ 308 (366)
T ss_pred HHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHH
Confidence 9999999887765433333 3333334456667888888888887775 3455555555555566888899999
Q ss_pred HHHHHHCCCCCCHHHHH
Q 036237 405 FNKMCRMGMKPTAITFI 421 (689)
Q Consensus 405 ~~~m~~~g~~p~~~t~~ 421 (689)
.+.|.+ ..|...+-+
T Consensus 309 ~e~~~~--~~P~~~l~e 323 (366)
T KOG2796|consen 309 LEAMVQ--QDPRHYLHE 323 (366)
T ss_pred HHHHhc--cCCccchhh
Confidence 999887 455555444
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.0088 Score=52.24 Aligned_cols=93 Identities=8% Similarity=-0.015 Sum_probs=48.6
Q ss_pred ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC-hhHHHH
Q 036237 381 KVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAI-TFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPT-IEHYGC 458 (689)
Q Consensus 381 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~ 458 (689)
+......+..-+.+.|++++|..+|+-+.. +.|... -|..|..+|...|++++|+..|.... .+.|| +..+-.
T Consensus 34 ~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~--~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~---~L~~ddp~~~~~ 108 (157)
T PRK15363 34 PLNTLYRYAMQLMEVKEFAGAARLFQLLTI--YDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAA---QIKIDAPQAPWA 108 (157)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHH---hcCCCCchHHHH
Confidence 333344444555566666666666666555 344433 34444455555666666666666555 22333 444445
Q ss_pred HHHHHHhcCCHHHHHHHHHh
Q 036237 459 LVDILCRTGYLEEAKSTIES 478 (689)
Q Consensus 459 li~~~~~~g~~~~A~~~~~~ 478 (689)
+...|...|+.++|.+-|+.
T Consensus 109 ag~c~L~lG~~~~A~~aF~~ 128 (157)
T PRK15363 109 AAECYLACDNVCYAIKALKA 128 (157)
T ss_pred HHHHHHHcCCHHHHHHHHHH
Confidence 55555555555555555543
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.34 Score=48.34 Aligned_cols=242 Identities=19% Similarity=0.212 Sum_probs=157.4
Q ss_pred HcCChHHHHHHHHHhccCCCCcChh--hHHHHHHHHHcccchhhHHHHHHHHHHhCCccchhHHhHHHhhHHhcCCHHHH
Q 036237 293 LNGRFMEALELLETMLIGDVLPNDA--TLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESA 370 (689)
Q Consensus 293 ~~g~~~~A~~~~~~m~~~g~~p~~~--t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A 370 (689)
-.|++++|.+-|+.|... |... .+..+.-..-+.|+.+.|+++-+..-..- +.-.....+.++..+..|+++.|
T Consensus 132 ~eG~~~~Ar~kfeAMl~d---PEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~A 207 (531)
T COG3898 132 LEGDYEDARKKFEAMLDD---PETRLLGLRGLYLEAQRLGAREAARHYAERAAEKA-PQLPWAARATLEARCAAGDWDGA 207 (531)
T ss_pred hcCchHHHHHHHHHHhcC---hHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHHH
Confidence 357777787777777642 2111 11222223345677777777766655443 22356677788889999999999
Q ss_pred HHHHHhcCC-----CChh--hHHHHHHHHHH---cCCHHHHHHHHHHHHHCCCCCCHHH-HHHHHHHHhccCcHHHHHHH
Q 036237 371 LTVFRAISK-----KKVG--HWTAMIVGLGM---HGMATQALDLFNKMCRMGMKPTAIT-FIGVLNACSHAGLVNDGRRY 439 (689)
Q Consensus 371 ~~~~~~~~~-----~~~~--~~~~li~~~~~---~g~~~~A~~l~~~m~~~g~~p~~~t-~~~ll~a~~~~g~~~~a~~~ 439 (689)
+++.+.-.. +++. .-..|+.+-+. ..+...|...-.+..+ +.||.+- -.....++.+.|++.++-.+
T Consensus 208 lkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~i 285 (531)
T COG3898 208 LKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKI 285 (531)
T ss_pred HHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhH
Confidence 999886543 3432 22233333221 3456666666655554 6788653 34445788999999999999
Q ss_pred HHHhHHhcCCCCChhHHHHHHHHHHhcCCHHH--HHH--HHHhCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHhhc
Q 036237 440 FNMMINDYGIEPTIEHYGCLVDILCRTGYLEE--AKS--TIESMPMRP-NFVIWMSLLSGARNHGNKDIGEYAANNLIKV 514 (689)
Q Consensus 440 ~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~--A~~--~~~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 514 (689)
++.+-+ ..|.+...... .+.|.|+... ... -+.. ++| +..+..++..+-...|++..|..-.+.+...
T Consensus 286 lE~aWK---~ePHP~ia~lY--~~ar~gdta~dRlkRa~~L~s--lk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~ 358 (531)
T COG3898 286 LETAWK---AEPHPDIALLY--VRARSGDTALDRLKRAKKLES--LKPNNAESSLAVAEAALDAGEFSAARAKAEAAARE 358 (531)
T ss_pred HHHHHh---cCCChHHHHHH--HHhcCCCcHHHHHHHHHHHHh--cCccchHHHHHHHHHHHhccchHHHHHHHHHHhhh
Confidence 999883 45665544322 3445555221 111 1223 345 4567778888888999999999999999999
Q ss_pred CCCCchhHHHHHHHHHh-cCCcchHHHHHHHHHhC
Q 036237 515 APDTIGCYVVLSNIYAA-AGQWDKVSEVREMMKKR 548 (689)
Q Consensus 515 ~p~~~~~~~~L~~~~~~-~g~~~~A~~~~~~m~~~ 548 (689)
.|.. ..|..|+++-.. .|+-.++...+.+..+.
T Consensus 359 ~pre-s~~lLlAdIeeAetGDqg~vR~wlAqav~A 392 (531)
T COG3898 359 APRE-SAYLLLADIEEAETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred Cchh-hHHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence 9954 689999998765 49999998888776643
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.0012 Score=52.04 Aligned_cols=80 Identities=16% Similarity=0.288 Sum_probs=43.9
Q ss_pred cCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCCHHHH
Q 036237 395 HGMATQALDLFNKMCRMGM-KPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPT-IEHYGCLVDILCRTGYLEEA 472 (689)
Q Consensus 395 ~g~~~~A~~l~~~m~~~g~-~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A 472 (689)
.|++++|+.+|+++.+... .|+...+..+..++.+.|++++|..+++. . ...|+ ....-.+..+|.+.|++++|
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~---~~~~~~~~~~~l~a~~~~~l~~y~eA 77 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-L---KLDPSNPDIHYLLARCLLKLGKYEEA 77 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-H---THHHCHHHHHHHHHHHHHHTT-HHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-h---CCCCCCHHHHHHHHHHHHHhCCHHHH
Confidence 4667777777777766422 11333444456666777777777777766 2 12222 23333446666666666666
Q ss_pred HHHHHh
Q 036237 473 KSTIES 478 (689)
Q Consensus 473 ~~~~~~ 478 (689)
++.+++
T Consensus 78 i~~l~~ 83 (84)
T PF12895_consen 78 IKALEK 83 (84)
T ss_dssp HHHHHH
T ss_pred HHHHhc
Confidence 666654
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.013 Score=63.12 Aligned_cols=141 Identities=12% Similarity=0.054 Sum_probs=103.8
Q ss_pred CCCChhhHHHHHHHHHHc--C---CHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhcc--------CcHHHHHHHHHHh
Q 036237 378 SKKKVGHWTAMIVGLGMH--G---MATQALDLFNKMCRMGMKPTAI-TFIGVLNACSHA--------GLVNDGRRYFNMM 443 (689)
Q Consensus 378 ~~~~~~~~~~li~~~~~~--g---~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~~--------g~~~~a~~~~~~~ 443 (689)
...+...|...+.+.... + ...+|..+|++..+ ..|+.. .+..+..++... .++..+.+..+..
T Consensus 333 ~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~--ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a 410 (517)
T PRK10153 333 LPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILK--SEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNI 410 (517)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHh
Confidence 346788999988885543 2 36799999999998 678854 555544443221 1233444444443
Q ss_pred HHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCch
Q 036237 444 INDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESM-PMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIG 520 (689)
Q Consensus 444 ~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 520 (689)
........+...|..+.-.+...|++++|...++++ ...|+...|..+...+...|+.++|...+++++.++|.++.
T Consensus 411 ~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt 488 (517)
T PRK10153 411 VALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENT 488 (517)
T ss_pred hhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch
Confidence 321123334577888877777889999999999997 46789889999999999999999999999999999998874
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.0067 Score=58.44 Aligned_cols=102 Identities=12% Similarity=0.071 Sum_probs=86.9
Q ss_pred CCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhc---CChHHHHHHHHHHhhcCCCCchhHHH
Q 036237 450 EPTIEHYGCLVDILCRTGYLEEAKSTIESM-PMR-PNFVIWMSLLSGARNH---GNKDIGEYAANNLIKVAPDTIGCYVV 524 (689)
Q Consensus 450 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~ll~~~~~~---g~~~~a~~~~~~~~~~~p~~~~~~~~ 524 (689)
+-|...|-.|...|.+.|+++.|..-|.+. .+. +++..+..+..++..+ .+..++..+++++++++|.++.+...
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~l 232 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSL 232 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHH
Confidence 345889999999999999999999999886 333 4667777777776544 35678999999999999999999999
Q ss_pred HHHHHHhcCCcchHHHHHHHHHhCCCc
Q 036237 525 LSNIYAAAGQWDKVSEVREMMKKRGFR 551 (689)
Q Consensus 525 L~~~~~~~g~~~~A~~~~~~m~~~~~~ 551 (689)
|+..+...|++.+|...++.|.+..-.
T Consensus 233 LA~~afe~g~~~~A~~~Wq~lL~~lp~ 259 (287)
T COG4235 233 LAFAAFEQGDYAEAAAAWQMLLDLLPA 259 (287)
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcCCC
Confidence 999999999999999999999986543
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.027 Score=56.11 Aligned_cols=115 Identities=17% Similarity=0.154 Sum_probs=70.4
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc-CcHHHHHHHHHHhHHhcCCCCC----hhHHHHHHHH
Q 036237 388 MIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHA-GLVNDGRRYFNMMINDYGIEPT----IEHYGCLVDI 462 (689)
Q Consensus 388 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~-g~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~~ 462 (689)
.+..|...|++..|-+.+.++ ...|... |++++|.+.|+....-+..... ...+..+...
T Consensus 100 A~~~y~~~G~~~~aA~~~~~l---------------A~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l 164 (282)
T PF14938_consen 100 AIEIYREAGRFSQAAKCLKEL---------------AEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADL 164 (282)
T ss_dssp HHHHHHHCT-HHHHHHHHHHH---------------HHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHhcCcHHHHHHHHHHH---------------HHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHH
Confidence 345566666666655555444 3456666 7888888888877643322222 3456677888
Q ss_pred HHhcCCHHHHHHHHHhCC---C-----CCCHH-HHHHHHHHHHhcCChHHHHHHHHHHhhcCCC
Q 036237 463 LCRTGYLEEAKSTIESMP---M-----RPNFV-IWMSLLSGARNHGNKDIGEYAANNLIKVAPD 517 (689)
Q Consensus 463 ~~~~g~~~~A~~~~~~~~---~-----~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 517 (689)
+.+.|++++|.++|++.. . +.+.. .+...+-.+...||...|...+++....+|.
T Consensus 165 ~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~ 228 (282)
T PF14938_consen 165 YARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPS 228 (282)
T ss_dssp HHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTT
T ss_pred HHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 999999999999998762 1 11222 2233333556678999999999999888874
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.018 Score=57.12 Aligned_cols=134 Identities=11% Similarity=0.126 Sum_probs=96.8
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHH
Q 036237 383 GHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNA-CSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVD 461 (689)
Q Consensus 383 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a-~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 461 (689)
.+|..++...-+.+..+.|..+|.+..+.+ .-+...|...... +...++.+.|.++|+...+. +..+...|...++
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~--f~~~~~~~~~Y~~ 78 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK--FPSDPDFWLEYLD 78 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH--HTT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHH
Confidence 357777787778888888888888887543 2233344433333 33356777799999999864 4566778888899
Q ss_pred HHHhcCCHHHHHHHHHhCC-CCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCc
Q 036237 462 ILCRTGYLEEAKSTIESMP-MRPN----FVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTI 519 (689)
Q Consensus 462 ~~~~~g~~~~A~~~~~~~~-~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 519 (689)
.+.+.|+.+.|..+|++.- .-|. ...|...+.-=.+.|+.+....+.+++.+.-|++.
T Consensus 79 ~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~ 141 (280)
T PF05843_consen 79 FLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDN 141 (280)
T ss_dssp HHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-
T ss_pred HHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhh
Confidence 9999999999999999862 2233 34899999999999999999999999999888753
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.081 Score=55.75 Aligned_cols=97 Identities=18% Similarity=0.198 Sum_probs=57.0
Q ss_pred HHhhHHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHH
Q 036237 357 LIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDG 436 (689)
Q Consensus 357 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a 436 (689)
..+++...|+.++|..+. ..+|-.+-++++-+++-. .+..+...+..-+-+...+.-|
T Consensus 709 AAEmLiSaGe~~KAi~i~------------------~d~gW~d~lidI~rkld~----~ere~l~~~a~ylk~l~~~gLA 766 (1081)
T KOG1538|consen 709 AAEMLISAGEHVKAIEIC------------------GDHGWVDMLIDIARKLDK----AEREPLLLCATYLKKLDSPGLA 766 (1081)
T ss_pred HHHHhhcccchhhhhhhh------------------hcccHHHHHHHHHhhcch----hhhhHHHHHHHHHhhccccchH
Confidence 345555666666665542 334444445554444332 2233444444445556666777
Q ss_pred HHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCC-CCCCH
Q 036237 437 RRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMP-MRPNF 485 (689)
Q Consensus 437 ~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~p~~ 485 (689)
-++|.+|-. ...++++....++|.+|..+-++.| ..||+
T Consensus 767 aeIF~k~gD----------~ksiVqlHve~~~W~eAFalAe~hPe~~~dV 806 (1081)
T KOG1538|consen 767 AEIFLKMGD----------LKSLVQLHVETQRWDEAFALAEKHPEFKDDV 806 (1081)
T ss_pred HHHHHHhcc----------HHHHhhheeecccchHhHhhhhhCccccccc
Confidence 777777752 2457788888888888888888875 33443
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.091 Score=46.69 Aligned_cols=132 Identities=14% Similarity=0.121 Sum_probs=99.5
Q ss_pred CCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCC-CCChhHHHHHHHHHHhcCCHHHHHHHHHhCC-CCC---CHHH
Q 036237 413 MKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGI-EPTIEHYGCLVDILCRTGYLEEAKSTIESMP-MRP---NFVI 487 (689)
Q Consensus 413 ~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~p---~~~~ 487 (689)
..|+...-..|..+....|+..+|...|++... |+ .-|....-.+.++....+++.+|...+++.. ..| .+.+
T Consensus 85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qals--G~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~ 162 (251)
T COG4700 85 IAPTVQNRYRLANALAELGRYHEAVPHYQQALS--GIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDG 162 (251)
T ss_pred hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhc--cccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCc
Confidence 567777777788888999999999999988874 54 4456777778888888899999988888762 112 2223
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCcchHHHHHHHHHh
Q 036237 488 WMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKK 547 (689)
Q Consensus 488 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~~~~~g~~~~A~~~~~~m~~ 547 (689)
-..+...+...|..+.|+..|+.++.-.| .+..-......+.+.|+.+++..-+..+.+
T Consensus 163 ~Ll~aR~laa~g~~a~Aesafe~a~~~yp-g~~ar~~Y~e~La~qgr~~ea~aq~~~v~d 221 (251)
T COG4700 163 HLLFARTLAAQGKYADAESAFEVAISYYP-GPQARIYYAEMLAKQGRLREANAQYVAVVD 221 (251)
T ss_pred hHHHHHHHHhcCCchhHHHHHHHHHHhCC-CHHHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 44566778889999999999999999887 445666677888999988888766555543
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.45 Score=47.93 Aligned_cols=106 Identities=18% Similarity=0.185 Sum_probs=72.8
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHhccCCCCcChhhHHHHHHHHHcccc
Q 036237 252 SWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAV 331 (689)
Q Consensus 252 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~ 331 (689)
+.+..|.-+...|+...|.++-.+..-+|-.-|-..+.+++..++|++-.++... +-++..|-.++.+|.+.|.
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~~~ 252 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKYGN 252 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHCCC
Confidence 3344455666778888888888888878888888888888888888776665432 1234677777778877777
Q ss_pred hhhHHHHHHHHHHhCCccchhHHhHHHhhHHhcCCHHHHHHH
Q 036237 332 LNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTV 373 (689)
Q Consensus 332 ~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~ 373 (689)
..+|..+...+ .+..-+.+|.++|++.+|.+.
T Consensus 253 ~~eA~~yI~k~----------~~~~rv~~y~~~~~~~~A~~~ 284 (319)
T PF04840_consen 253 KKEASKYIPKI----------PDEERVEMYLKCGDYKEAAQE 284 (319)
T ss_pred HHHHHHHHHhC----------ChHHHHHHHHHCCCHHHHHHH
Confidence 77777665541 114456777777777777655
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.48 Score=48.30 Aligned_cols=443 Identities=15% Similarity=0.111 Sum_probs=197.8
Q ss_pred HHhcCCCchHHHHHHHHHHHhCCCCC------chHHHHHhhcccccCCCCHHHHHHHHhcccC-CCChhhHHHHHHHH--
Q 036237 27 ILKFSSTHKETQQLHALSVKTNLIYH------SGISSRLLSLYVDPHINNLHYARSIFDRILQ-HPSLVLYNLLIKCY-- 97 (689)
Q Consensus 27 ~l~~c~~~~~~~~~~~~~~~~g~~~~------~~~~~~ll~~~~~~~~g~~~~A~~~f~~~~~-~~~~~~~~~ll~~~-- 97 (689)
+|+--.+..++..++..+.+.- ..+ ....+.++++|-- .+++..........+ .| ...|-.+..++
T Consensus 15 ~Lqkq~~~~esEkifskI~~e~-~~~~f~lkeEvl~grilnAffl---~nld~Me~~l~~l~~~~~-~s~~l~LF~~L~~ 89 (549)
T PF07079_consen 15 ILQKQKKFQESEKIFSKIYDEK-ESSPFLLKEEVLGGRILNAFFL---NNLDLMEKQLMELRQQFG-KSAYLPLFKALVA 89 (549)
T ss_pred HHHHHhhhhHHHHHHHHHHHHh-hcchHHHHHHHHhhHHHHHHHH---hhHHHHHHHHHHHHHhcC-CchHHHHHHHHHH
Confidence 3444445677777777776542 112 2345566777764 555555555444442 23 33455555443
Q ss_pred HhCCCchHHHHHHHHhHhC--CCCC---Cc--------ccH-HHHHHHHHhcCChHHHHHHHHHHHHhCCC----CchhH
Q 036237 98 VFNQRSHEALTLFCDLLDR--FLLP---DN--------FTL-PCVIKGAARLGAIKEGKQIHGLVFKLGFG----FDKFV 159 (689)
Q Consensus 98 ~~~g~~~~a~~~~~~m~~~--g~~p---~~--------~t~-~~ll~~~~~~~~~~~a~~~~~~~~~~g~~----~~~~~ 159 (689)
-+.+.++.|++.+..-... +..| |. +.+ +..+.++...|++.+|+.++++++..=++ -+..+
T Consensus 90 Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~ 169 (549)
T PF07079_consen 90 YKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDM 169 (549)
T ss_pred HHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHH
Confidence 3567777777777655443 2221 11 111 23344556777777777777776655333 56667
Q ss_pred HHHHHHHHHhcCChHHHHHHHhhCCCCCeehHHHHHHHHHhCCChHHHHHHHhhCCCCCcchHHHHHHHHHhC-----CC
Q 036237 160 LSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDRDLFSWTCLVDGFSKC-----GK 234 (689)
Q Consensus 160 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~d~~~~~~li~~~~~~-----g~ 234 (689)
||.++-++++.=-++. -+.+...=..-|-.||..|.+.=+.-++...-.-. |-..-...++....-. .-
T Consensus 170 yd~~vlmlsrSYfLEl----~e~~s~dl~pdyYemilfY~kki~~~d~~~Y~k~~--peeeL~s~imqhlfi~p~e~l~~ 243 (549)
T PF07079_consen 170 YDRAVLMLSRSYFLEL----KESMSSDLYPDYYEMILFYLKKIHAFDQRPYEKFI--PEEELFSTIMQHLFIVPKERLPP 243 (549)
T ss_pred HHHHHHHHhHHHHHHH----HHhcccccChHHHHHHHHHHHHHHHHhhchHHhhC--cHHHHHHHHHHHHHhCCHhhccH
Confidence 7776666655311111 11111111223555555555442221111000000 1111111111111100 00
Q ss_pred hHHHHHHHhhcC-cCC-cchHHHHHHHHHhcCCHHHHHHHHHhcC--------CCChHHHHHHHHHHHHcCChHHHHHHH
Q 036237 235 VEIAREIFYRMP-NRN-LVSWNAMINGYMKAGDVDSACELFDDME--------IRDLITWNSMIAGYELNGRFMEALELL 304 (689)
Q Consensus 235 ~~~A~~~~~~~~-~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~~--------~~~~~~~~~li~~~~~~g~~~~A~~~~ 304 (689)
+-.+.+.++.-- .|+ ..+...|+.-+.+ +.+++..+-+.+. ++=+.++..++....+.++..+|...+
T Consensus 244 ~mq~l~~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l 321 (549)
T PF07079_consen 244 LMQILENWENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYL 321 (549)
T ss_pred HHHHHHHHHhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 111222221111 121 1222333333333 3333333332221 223456777777788888888887777
Q ss_pred HHhccCCCCcChhhHHHH-------HHHHH-cccc---hhhHHHHHHHHHHhCCccchhHHhHHHh---hHHhcCC-HHH
Q 036237 305 ETMLIGDVLPNDATLVSA-------LSAVA-GLAV---LNKGRWMHSYIVKNGFVVDGVLGTLLIQ---MYSKCGS-IES 369 (689)
Q Consensus 305 ~~m~~~g~~p~~~t~~~l-------l~a~~-~~~~---~~~a~~i~~~~~~~g~~~~~~~~~~li~---~~~~~g~-~~~ 369 (689)
.-+.. +.|+...-.-+ -+..+ .-.. +..-..++..+....+..- ....-|+. -+-+.|. -++
T Consensus 322 ~lL~~--ldp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiDrq-QLvh~L~~~Ak~lW~~g~~dek 398 (549)
T PF07079_consen 322 ALLKI--LDPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDIDRQ-QLVHYLVFGAKHLWEIGQCDEK 398 (549)
T ss_pred HHHHh--cCCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcccHH-HHHHHHHHHHHHHHhcCCccHH
Confidence 66654 23333211111 11111 1111 1111222333322222111 11111221 2333444 566
Q ss_pred HHHHHHhcCC---CChhhHHHHH----HHHHHc---CCHHHHHHHHHHHHHCCCCCCHH----HHHHHHHH--HhccCcH
Q 036237 370 ALTVFRAISK---KKVGHWTAMI----VGLGMH---GMATQALDLFNKMCRMGMKPTAI----TFIGVLNA--CSHAGLV 433 (689)
Q Consensus 370 A~~~~~~~~~---~~~~~~~~li----~~~~~~---g~~~~A~~l~~~m~~~g~~p~~~----t~~~ll~a--~~~~g~~ 433 (689)
|.++++.+.. -|..+-|... ..|.+. ....+-+.+-+-..+.|+.|-.+ .-+.|..| +-..|++
T Consensus 399 alnLLk~il~ft~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey 478 (549)
T PF07079_consen 399 ALNLLKLILQFTNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEY 478 (549)
T ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccH
Confidence 6777766654 2333333221 122221 12233333333344556666433 22223322 3456777
Q ss_pred HHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHH
Q 036237 434 NDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMS 490 (689)
Q Consensus 434 ~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ 490 (689)
.++.-+-.-+. .+.|++.+|..+.-.+....+++||..++..+| |+..+|++
T Consensus 479 ~kc~~ys~WL~---~iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~LP--~n~~~~ds 530 (549)
T PF07079_consen 479 HKCYLYSSWLT---KIAPSPQAYRLLGLCLMENKRYQEAWEYLQKLP--PNERMRDS 530 (549)
T ss_pred HHHHHHHHHHH---HhCCcHHHHHHHHHHHHHHhhHHHHHHHHHhCC--CchhhHHH
Confidence 77665544444 567777777777777777777777777777775 56555554
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.43 Score=47.62 Aligned_cols=270 Identities=16% Similarity=0.097 Sum_probs=133.8
Q ss_pred CCCHHHHHHHHhcccC--CCChhhHHHHHHHH--HhCCCchHHHHHHHHhHhCCCCCCcccHHHHHH----HHHhcCChH
Q 036237 68 INNLHYARSIFDRILQ--HPSLVLYNLLIKCY--VFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIK----GAARLGAIK 139 (689)
Q Consensus 68 ~g~~~~A~~~f~~~~~--~~~~~~~~~ll~~~--~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~----~~~~~~~~~ 139 (689)
.|+-..|++.-.+... ..|....-.++.+- .-.|+++.|.+-|+.|.. |..|-..=++ ..-+.|+.+
T Consensus 97 AGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~-----dPEtRllGLRgLyleAqr~Gare 171 (531)
T COG3898 97 AGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLD-----DPETRLLGLRGLYLEAQRLGARE 171 (531)
T ss_pred cCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhc-----ChHHHHHhHHHHHHHHHhcccHH
Confidence 5666666666544332 33433344444332 335777777777777764 2222222222 223567777
Q ss_pred HHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhhCC-----CCCee--hHHHHHHHHHh---CCChHHHHH
Q 036237 140 EGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMD-----DKDLV--SWNCLIDGYVK---KGEVEVAMK 209 (689)
Q Consensus 140 ~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~-----~~~~~--~~~~li~~~~~---~g~~~~A~~ 209 (689)
.|+++-+..-..- +.-...+.+++...+..|+++.|+++.+.-. ++|+. .-..|+.+-+. ..+...|..
T Consensus 172 aAr~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~ 250 (531)
T COG3898 172 AARHYAERAAEKA-PQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARD 250 (531)
T ss_pred HHHHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHH
Confidence 7777666665443 2334566777777777777777777776543 23322 11122221111 123333433
Q ss_pred HHhhCCC--CCcch-HHHHHHHHHhCCChHHHHHHHhhcCcCCcchHHHHHHHHHhcCCHHHH----HHHHHhcCCCChH
Q 036237 210 LFDEMPD--RDLFS-WTCLVDGFSKCGKVEIAREIFYRMPNRNLVSWNAMINGYMKAGDVDSA----CELFDDMEIRDLI 282 (689)
Q Consensus 210 ~~~~m~~--~d~~~-~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A----~~~~~~~~~~~~~ 282 (689)
.-.+..+ ||.+- -..-..++.+.|+..++-.+++.+-+..+..--.++..+.+.|+.... .+-+..|+..+..
T Consensus 251 ~A~~a~KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~ia~lY~~ar~gdta~dRlkRa~~L~slk~nnae 330 (531)
T COG3898 251 DALEANKLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDIALLYVRARSGDTALDRLKRAKKLESLKPNNAE 330 (531)
T ss_pred HHHHHhhcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHHHHHHHHhcCCCcHHHHHHHHHHHHhcCccchH
Confidence 3333322 34332 222334566666666666666666665544444455555555543211 1124445555555
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHhccCCCCcChhhHHHHHHHH-HcccchhhHHHHHHHHHHh
Q 036237 283 TWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAV-AGLAVLNKGRWMHSYIVKN 345 (689)
Q Consensus 283 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~-~~~~~~~~a~~i~~~~~~~ 345 (689)
+--.+..+-...|++..|..--+.... ..|....|..+...- +..|+-.++++...+.++.
T Consensus 331 s~~~va~aAlda~e~~~ARa~Aeaa~r--~~pres~~lLlAdIeeAetGDqg~vR~wlAqav~A 392 (531)
T COG3898 331 SSLAVAEAALDAGEFSAARAKAEAAAR--EAPRESAYLLLADIEEAETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred HHHHHHHHHHhccchHHHHHHHHHHhh--hCchhhHHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence 555555555566666555444443332 234444444444332 2234545555554444443
|
|
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.0086 Score=48.48 Aligned_cols=78 Identities=13% Similarity=0.019 Sum_probs=65.8
Q ss_pred HHHHHHHhCCCchHHHHHHHHhHhCCC-CCCcccHHHHHHHHHhcC--------ChHHHHHHHHHHHHhCCCCchhHHHH
Q 036237 92 LLIKCYVFNQRSHEALTLFCDLLDRFL-LPDNFTLPCVIKGAARLG--------AIKEGKQIHGLVFKLGFGFDKFVLSS 162 (689)
Q Consensus 92 ~ll~~~~~~g~~~~a~~~~~~m~~~g~-~p~~~t~~~ll~~~~~~~--------~~~~a~~~~~~~~~~g~~~~~~~~~~ 162 (689)
..|..+...+++.....+|+.+++.|+ .|+..+|+.++.+.++.. .+-....+++.|+..+++|+..+|+.
T Consensus 30 ~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYni 109 (120)
T PF08579_consen 30 DNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNI 109 (120)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHH
Confidence 456666677999999999999999999 899999999999987643 24457788999999999999999999
Q ss_pred HHHHHHh
Q 036237 163 LVSMYAK 169 (689)
Q Consensus 163 li~~~~~ 169 (689)
++..+.+
T Consensus 110 vl~~Llk 116 (120)
T PF08579_consen 110 VLGSLLK 116 (120)
T ss_pred HHHHHHH
Confidence 9987765
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.12 Score=52.49 Aligned_cols=160 Identities=14% Similarity=0.104 Sum_probs=106.7
Q ss_pred HHHhhHHhcCCHHHHHHHHHhcCCC---C----hhhHHHHHHHHHH---cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 036237 356 LLIQMYSKCGSIESALTVFRAISKK---K----VGHWTAMIVGLGM---HGMATQALDLFNKMCRMGMKPTAITFIGVLN 425 (689)
Q Consensus 356 ~li~~~~~~g~~~~A~~~~~~~~~~---~----~~~~~~li~~~~~---~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~ 425 (689)
.|+-.|....+++..+++.+.+... + ...-....-++-+ .|+.++|++++..+....-.++..||..+..
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GR 225 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGR 225 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 3444588888888888888888763 1 1122233445556 7899999999999666666777888877766
Q ss_pred HHhc---------cCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHH----HHHH---Hh-C------CCC
Q 036237 426 ACSH---------AGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEA----KSTI---ES-M------PMR 482 (689)
Q Consensus 426 a~~~---------~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A----~~~~---~~-~------~~~ 482 (689)
.|-. ...+++|+..|.+.- .+.|+..+--.++-++...|...+. .++- .. . ...
T Consensus 226 IyKD~~~~s~~~d~~~ldkAi~~Y~kgF---e~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~ 302 (374)
T PF13281_consen 226 IYKDLFLESNFTDRESLDKAIEWYRKGF---EIEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKM 302 (374)
T ss_pred HHHHHHHHcCccchHHHHHHHHHHHHHH---cCCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhcccccc
Confidence 5432 335778888887655 4567655444455555555542222 2222 11 1 122
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCC
Q 036237 483 PNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDT 518 (689)
Q Consensus 483 p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 518 (689)
.|...+.+++.++.-.||.+.|.+.+++++++.|+.
T Consensus 303 ~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~ 338 (374)
T PF13281_consen 303 QDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPA 338 (374)
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcc
Confidence 566777899999999999999999999999998864
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.12 Score=49.91 Aligned_cols=56 Identities=13% Similarity=0.137 Sum_probs=33.0
Q ss_pred HHHHHHhcCCHHHHHHHHHhcCCCC---hHH---HHHHHHHHHHcCChHHHHHHHHHhccCC
Q 036237 256 MINGYMKAGDVDSACELFDDMEIRD---LIT---WNSMIAGYELNGRFMEALELLETMLIGD 311 (689)
Q Consensus 256 li~~~~~~g~~~~A~~~~~~~~~~~---~~~---~~~li~~~~~~g~~~~A~~~~~~m~~~g 311 (689)
....+.+.|++++|.+.|+.+.... ... .-.++.+|.+.+++++|...|++..+.-
T Consensus 38 ~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~ 99 (243)
T PRK10866 38 TAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN 99 (243)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Confidence 3444555667777777776665321 111 2334566677777777777777776643
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.0017 Score=48.67 Aligned_cols=54 Identities=26% Similarity=0.260 Sum_probs=24.1
Q ss_pred cCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCc
Q 036237 466 TGYLEEAKSTIESM-PMRP-NFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTI 519 (689)
Q Consensus 466 ~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 519 (689)
.|++++|.++|+++ ...| +...+..+..+|...|++++|...++++...+|+++
T Consensus 4 ~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~ 59 (68)
T PF14559_consen 4 QGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNP 59 (68)
T ss_dssp TTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHH
T ss_pred ccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHH
Confidence 34444444444443 1112 334444445555555555555555555555555443
|
... |
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.083 Score=51.09 Aligned_cols=170 Identities=14% Similarity=0.136 Sum_probs=103.3
Q ss_pred HhhHHhcCCHHHHHHHHHhcCCCCh---h---hHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHhc
Q 036237 358 IQMYSKCGSIESALTVFRAISKKKV---G---HWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTA--ITFIGVLNACSH 429 (689)
Q Consensus 358 i~~~~~~g~~~~A~~~~~~~~~~~~---~---~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~--~t~~~ll~a~~~ 429 (689)
...+.+.|++++|.+.|+.+....+ . ..-.++.+|.+.+++++|...|++..+. .|+. .-+...+.+.+.
T Consensus 39 A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~--~P~~~~~~~a~Y~~g~~~ 116 (243)
T PRK10866 39 AQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL--NPTHPNIDYVLYMRGLTN 116 (243)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CcCCCchHHHHHHHHHhh
Confidence 3445567888888888888765222 1 1234567778888888888888888874 3432 233333333331
Q ss_pred --cC---------------c---HHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHH
Q 036237 430 --AG---------------L---VNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWM 489 (689)
Q Consensus 430 --~g---------------~---~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~ 489 (689)
.+ + ..+|...|+.++ +-|-...-..+|...+..+..+--.. -.
T Consensus 117 ~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li----------------~~yP~S~ya~~A~~rl~~l~~~la~~-e~ 179 (243)
T PRK10866 117 MALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLV----------------RGYPNSQYTTDATKRLVFLKDRLAKY-EL 179 (243)
T ss_pred hhcchhhhhhccCCCccccCHHHHHHHHHHHHHHH----------------HHCcCChhHHHHHHHHHHHHHHHHHH-HH
Confidence 10 1 123334444444 33333333445544444332000000 01
Q ss_pred HHHHHHHhcCChHHHHHHHHHHhhcCCCC---chhHHHHHHHHHhcCCcchHHHHHHHHH
Q 036237 490 SLLSGARNHGNKDIGEYAANNLIKVAPDT---IGCYVVLSNIYAAAGQWDKVSEVREMMK 546 (689)
Q Consensus 490 ~ll~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~L~~~~~~~g~~~~A~~~~~~m~ 546 (689)
.+..-|.+.|.+..|..-++.+++--|+. +.+...+..+|.+.|..++|..+...+.
T Consensus 180 ~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 180 SVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 33445788899999999999999977765 4567788999999999999998887654
|
|
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.012 Score=47.58 Aligned_cols=81 Identities=14% Similarity=0.158 Sum_probs=65.7
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHhccC--------cHHHHHHHHHHhHHhcCCCCChh
Q 036237 384 HWTAMIVGLGMHGMATQALDLFNKMCRMGM-KPTAITFIGVLNACSHAG--------LVNDGRRYFNMMINDYGIEPTIE 454 (689)
Q Consensus 384 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~~~t~~~ll~a~~~~g--------~~~~a~~~~~~~~~~~~~~p~~~ 454 (689)
+-...|..+...+++...-.+|+.+++.|+ -|+..+|+.++.+..+.. ++-+.+.+|+.|.. .+++|+..
T Consensus 27 t~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~-~~lKP~~e 105 (120)
T PF08579_consen 27 TQIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILS-NKLKPNDE 105 (120)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHH-hccCCcHH
Confidence 334456666777999999999999999999 899999999998876532 45567888999984 58999999
Q ss_pred HHHHHHHHHHh
Q 036237 455 HYGCLVDILCR 465 (689)
Q Consensus 455 ~~~~li~~~~~ 465 (689)
+|+.++..+.+
T Consensus 106 tYnivl~~Llk 116 (120)
T PF08579_consen 106 TYNIVLGSLLK 116 (120)
T ss_pred HHHHHHHHHHH
Confidence 99999887764
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.0092 Score=54.65 Aligned_cols=97 Identities=14% Similarity=0.187 Sum_probs=76.5
Q ss_pred HHHHHhc--CCCChhhHHHHHHHHHHc-----CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc-------------
Q 036237 371 LTVFRAI--SKKKVGHWTAMIVGLGMH-----GMATQALDLFNKMCRMGMKPTAITFIGVLNACSHA------------- 430 (689)
Q Consensus 371 ~~~~~~~--~~~~~~~~~~li~~~~~~-----g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~------------- 430 (689)
...|+.. ..++-.+|..++..|.+. |..+=....++.|.+.|+.-|..+|+.||+.+=+.
T Consensus 34 ~~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~ 113 (228)
T PF06239_consen 34 EELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFM 113 (228)
T ss_pred HHHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhc
Confidence 4455555 456777777788777654 67777778888999999999999999999887652
Q ss_pred ---CcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCC
Q 036237 431 ---GLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGY 468 (689)
Q Consensus 431 ---g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~ 468 (689)
.+-+-|++++++|. ++|+-||.+++..|++.+++.+.
T Consensus 114 hyp~Qq~c~i~lL~qME-~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 114 HYPRQQECAIDLLEQME-NNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred cCcHHHHHHHHHHHHHH-HcCCCCcHHHHHHHHHHhccccH
Confidence 23567899999998 67999999999999999987775
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.013 Score=60.66 Aligned_cols=69 Identities=16% Similarity=0.136 Sum_probs=32.5
Q ss_pred HHHHHHHhCCCchHHHHHHHHhHhCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHH
Q 036237 92 LLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVL 160 (689)
Q Consensus 92 ~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~ 160 (689)
++++.|.+.|..+.+++++..=...|+-||.+||+.|+..+.+.|++..|.++...|...+...+..++
T Consensus 108 a~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~ 176 (429)
T PF10037_consen 108 ALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQ 176 (429)
T ss_pred HHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHH
Confidence 444444444444444444444444444444444444444444444444444444444444433333333
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.0032 Score=47.36 Aligned_cols=64 Identities=22% Similarity=0.216 Sum_probs=49.2
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcC-ChHHHHHHHHHHhhcCC
Q 036237 453 IEHYGCLVDILCRTGYLEEAKSTIESM-PMRP-NFVIWMSLLSGARNHG-NKDIGEYAANNLIKVAP 516 (689)
Q Consensus 453 ~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g-~~~~a~~~~~~~~~~~p 516 (689)
...|..+...+.+.|++++|+..|++. ...| +...|..+..++...| ++++|+..++++++++|
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 456677777777777888877777765 3334 4568888888888888 68999999999998887
|
... |
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.045 Score=54.35 Aligned_cols=126 Identities=11% Similarity=0.020 Sum_probs=64.1
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHhccCCCCcChhhHHHHHHH-HHcccchhhHHHHHHHHHHhCCccchhHHhHHHhhH
Q 036237 283 TWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSA-VAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMY 361 (689)
Q Consensus 283 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a-~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~ 361 (689)
+|-.++...-+.+..+.|..+|.+.++.+ ..+...|...... +...++.+.|..||+...+. +..+...+...++.+
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l 80 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFL 80 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHH
Confidence 45555555555555666666666665322 1122222222222 22234444456666555554 344555566666666
Q ss_pred HhcCCHHHHHHHHHhcCCC------ChhhHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 036237 362 SKCGSIESALTVFRAISKK------KVGHWTAMIVGLGMHGMATQALDLFNKMCR 410 (689)
Q Consensus 362 ~~~g~~~~A~~~~~~~~~~------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 410 (689)
.+.|+.+.|+.+|++.... -...|...+..=.+.|+.+.+.++.+++.+
T Consensus 81 ~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~ 135 (280)
T PF05843_consen 81 IKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE 135 (280)
T ss_dssp HHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred HHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 6666666666666665541 123566666665666666666666666555
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=96.76 E-value=0.0053 Score=62.84 Aligned_cols=62 Identities=13% Similarity=0.081 Sum_probs=33.2
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCH----HHHHHHHHHHHhcCChHHHHHHHHHHhhc
Q 036237 453 IEHYGCLVDILCRTGYLEEAKSTIESM-PMRPNF----VIWMSLLSGARNHGNKDIGEYAANNLIKV 514 (689)
Q Consensus 453 ~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 514 (689)
...++.+..+|.+.|++++|...|++. .+.|+. .+|..+..+|...|+.++|+..+++++++
T Consensus 75 a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 75 AEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 345555555555555555555555552 344442 23555555555555555555555555554
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.76 E-value=0.11 Score=54.93 Aligned_cols=55 Identities=16% Similarity=0.170 Sum_probs=32.7
Q ss_pred HHHHHHHHHhcCChHHHHHH--HHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhh
Q 036237 125 LPCVIKGAARLGAIKEGKQI--HGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDA 182 (689)
Q Consensus 125 ~~~ll~~~~~~~~~~~a~~~--~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 182 (689)
++..=++|.+.++..--+-+ ++.+.+.|-.|+... +...++-.|++.+|.++|.+
T Consensus 601 f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P~~iL---lA~~~Ay~gKF~EAAklFk~ 657 (1081)
T KOG1538|consen 601 FETARKAYIRVRDLRYLELISELEERKKRGETPNDLL---LADVFAYQGKFHEAAKLFKR 657 (1081)
T ss_pred hHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCchHHH---HHHHHHhhhhHHHHHHHHHH
Confidence 44445566666555443333 345666675576554 34456667888888888764
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.74 E-value=0.053 Score=54.07 Aligned_cols=130 Identities=12% Similarity=0.043 Sum_probs=81.8
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHH----HHHCCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHhHH---hcCC-CCChh
Q 036237 384 HWTAMIVGLGMHGMATQALDLFNK----MCRMGMKP-TAITFIGVLNACSHAGLVNDGRRYFNMMIN---DYGI-EPTIE 454 (689)
Q Consensus 384 ~~~~li~~~~~~g~~~~A~~l~~~----m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~---~~~~-~p~~~ 454 (689)
.|..|...|.-.|+++.|+..-+. .++.|-+. ....+..+.+++.-.|.++.|.+.|+.... +.|- .....
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ 276 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ 276 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence 455555556666777777665433 22223221 123566677777777888888887775431 1111 11234
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhC-------C-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhh
Q 036237 455 HYGCLVDILCRTGYLEEAKSTIESM-------P-MRPNFVIWMSLLSGARNHGNKDIGEYAANNLIK 513 (689)
Q Consensus 455 ~~~~li~~~~~~g~~~~A~~~~~~~-------~-~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 513 (689)
...+|...|.-...+++|+.++.+- . .--....+.+|..++...|..+.|...++..++
T Consensus 277 scYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 277 SCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 4556777777777788888777653 1 113456788899999999999999988887766
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.74 E-value=1.2 Score=48.44 Aligned_cols=82 Identities=12% Similarity=0.108 Sum_probs=36.9
Q ss_pred HHHHHHhcCChHHHHHHHhhCCCCC---eehHHHHHHHHHhCCC---hHHHHHHHhhCCC--CCcchHHHHHHHHHhCCC
Q 036237 163 LVSMYAKFGEIDLGRRVFDAMDDKD---LVSWNCLIDGYVKKGE---VEVAMKLFDEMPD--RDLFSWTCLVDGFSKCGK 234 (689)
Q Consensus 163 li~~~~~~g~~~~A~~~~~~m~~~~---~~~~~~li~~~~~~g~---~~~A~~~~~~m~~--~d~~~~~~li~~~~~~g~ 234 (689)
+|+-+...+.+..|.++-..+..|- ...+.....-+.+..+ -+-+..+-+++.. .+..+|..+..-....|+
T Consensus 443 vi~Rl~~r~~Y~vaIQva~~l~~p~~~~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~~~~~iSy~~iA~~Ay~~GR 522 (829)
T KOG2280|consen 443 VIDRLVDRHLYSVAIQVAKLLNLPESQGDRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAKLTPGISYAAIARRAYQEGR 522 (829)
T ss_pred hhHHHHhcchhHHHHHHHHHhCCccccccHHHHHHHHHHHhccCccchHHHHHHHHHhcccCCCceeHHHHHHHHHhcCc
Confidence 3444445555555555555554432 2233333444444321 1112222222222 244555555555555666
Q ss_pred hHHHHHHHhh
Q 036237 235 VEIAREIFYR 244 (689)
Q Consensus 235 ~~~A~~~~~~ 244 (689)
.+.|..+++.
T Consensus 523 ~~LA~kLle~ 532 (829)
T KOG2280|consen 523 FELARKLLEL 532 (829)
T ss_pred HHHHHHHHhc
Confidence 6666555543
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=96.68 E-value=0.18 Score=44.87 Aligned_cols=125 Identities=12% Similarity=0.094 Sum_probs=75.3
Q ss_pred ccchhHHhHHHhhHHhcCCHHHHHHHHHhcCC----CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC---HHHH
Q 036237 348 VVDGVLGTLLIQMYSKCGSIESALTVFRAISK----KKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPT---AITF 420 (689)
Q Consensus 348 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~---~~t~ 420 (689)
.|++..--.|.......|+..+|...|++... .|....-.+..+....+++..|...++.+.+.. |+ ..+.
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~--pa~r~pd~~ 163 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYN--PAFRSPDGH 163 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcC--CccCCCCch
Confidence 34444444556666666666666666665543 355555555566666677777777777766532 32 1233
Q ss_pred HHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHH
Q 036237 421 IGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIE 477 (689)
Q Consensus 421 ~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 477 (689)
..+..++...|...+|+..|+... ..-|+...-......+.+.|+.++|..-+.
T Consensus 164 Ll~aR~laa~g~~a~Aesafe~a~---~~ypg~~ar~~Y~e~La~qgr~~ea~aq~~ 217 (251)
T COG4700 164 LLFARTLAAQGKYADAESAFEVAI---SYYPGPQARIYYAEMLAKQGRLREANAQYV 217 (251)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHH---HhCCCHHHHHHHHHHHHHhcchhHHHHHHH
Confidence 445566677777777777777776 344665555555666777777776655443
|
|
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=96.66 E-value=0.026 Score=58.49 Aligned_cols=116 Identities=10% Similarity=-0.012 Sum_probs=58.7
Q ss_pred cChhhHHHHHHHHHcccchhhHHHHHHHHHHh--CCccchhHHhHHHhhHHhcCCHHHHHHHHHhcCC----CChhhHHH
Q 036237 314 PNDATLVSALSAVAGLAVLNKGRWMHSYIVKN--GFVVDGVLGTLLIQMYSKCGSIESALTVFRAISK----KKVGHWTA 387 (689)
Q Consensus 314 p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~--g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~ 387 (689)
.+...+-.+++.+....+++.+..++-..... ....-..+..++|..|.+.|..+++..+++.=.. +|..++|.
T Consensus 64 vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~ 143 (429)
T PF10037_consen 64 VSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNL 143 (429)
T ss_pred CcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHH
Confidence 34444444555555555555555544444332 1112233334555555555555555555544332 45555555
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc
Q 036237 388 MIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSH 429 (689)
Q Consensus 388 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~ 429 (689)
|+..+.+.|++..|.++..+|...+...+..|+...+.+|.+
T Consensus 144 Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~ 185 (429)
T PF10037_consen 144 LMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYK 185 (429)
T ss_pred HHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHH
Confidence 555555566666666665555555555555555555544443
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=96.65 E-value=0.013 Score=57.23 Aligned_cols=93 Identities=17% Similarity=0.189 Sum_probs=55.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCC---chhHHHHH
Q 036237 455 HYGCLVDILCRTGYLEEAKSTIESM-PMRPN----FVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDT---IGCYVVLS 526 (689)
Q Consensus 455 ~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~L~ 526 (689)
.|..-+..+.+.|++++|...|+.. ...|+ ...+.-+...+...|+++.|...|+++++..|++ +.++..++
T Consensus 145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg 224 (263)
T PRK10803 145 DYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVG 224 (263)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHH
Confidence 3444444445556666666666554 12232 2344556666666777777777777777665553 34455556
Q ss_pred HHHHhcCCcchHHHHHHHHHh
Q 036237 527 NIYAAAGQWDKVSEVREMMKK 547 (689)
Q Consensus 527 ~~~~~~g~~~~A~~~~~~m~~ 547 (689)
.+|...|++++|..+++.+.+
T Consensus 225 ~~~~~~g~~~~A~~~~~~vi~ 245 (263)
T PRK10803 225 VIMQDKGDTAKAKAVYQQVIK 245 (263)
T ss_pred HHHHHcCCHHHHHHHHHHHHH
Confidence 667677777777777776654
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=96.64 E-value=0.027 Score=47.41 Aligned_cols=85 Identities=19% Similarity=0.039 Sum_probs=48.9
Q ss_pred HHHHHhcCCHHHHHHHHHhC---CCCC-C-HHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCC---CchhHHHHHHHHHh
Q 036237 460 VDILCRTGYLEEAKSTIESM---PMRP-N-FVIWMSLLSGARNHGNKDIGEYAANNLIKVAPD---TIGCYVVLSNIYAA 531 (689)
Q Consensus 460 i~~~~~~g~~~~A~~~~~~~---~~~p-~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~---~~~~~~~L~~~~~~ 531 (689)
..++-..|+.++|..++++. +... + ...+-.+.+.+...|++++|..++++.+...|+ +......++.++..
T Consensus 8 A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~ 87 (120)
T PF12688_consen 8 AWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALYN 87 (120)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHH
Confidence 34444555555555555543 1111 1 224455666666677777777777776666565 44455556666677
Q ss_pred cCCcchHHHHHHH
Q 036237 532 AGQWDKVSEVREM 544 (689)
Q Consensus 532 ~g~~~~A~~~~~~ 544 (689)
.|+.++|.+.+-.
T Consensus 88 ~gr~~eAl~~~l~ 100 (120)
T PF12688_consen 88 LGRPKEALEWLLE 100 (120)
T ss_pred CCCHHHHHHHHHH
Confidence 7777777666543
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.63 E-value=0.0036 Score=42.12 Aligned_cols=42 Identities=21% Similarity=0.404 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchhHHHHHH
Q 036237 486 VIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSN 527 (689)
Q Consensus 486 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~ 527 (689)
.+|..+..++...|++++|+++++++++.+|+++..+..|+.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 467888999999999999999999999999999988877754
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=96.53 E-value=0.053 Score=45.62 Aligned_cols=59 Identities=17% Similarity=0.167 Sum_probs=36.0
Q ss_pred HHHHHHHcCChHHHHHHHHHhccCCCCcCh--hhHHHHHHHHHcccchhhHHHHHHHHHHh
Q 036237 287 MIAGYELNGRFMEALELLETMLIGDVLPND--ATLVSALSAVAGLAVLNKGRWMHSYIVKN 345 (689)
Q Consensus 287 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~a~~~~~~~~~a~~i~~~~~~~ 345 (689)
+..++-..|+.++|+.+|++.+..|...+. ..+..+.+.+...|++++|..+++.....
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~ 67 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEE 67 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 445666778888888888888777655432 23334445555556666666665555443
|
|
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=96.50 E-value=0.016 Score=53.14 Aligned_cols=101 Identities=8% Similarity=-0.048 Sum_probs=64.5
Q ss_pred CCChhhHHHHHHHHHh-----CCCchHHHHHHHHhHhCCCCCCcccHHHHHHHHHh----------------cCChHHHH
Q 036237 84 HPSLVLYNLLIKCYVF-----NQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAAR----------------LGAIKEGK 142 (689)
Q Consensus 84 ~~~~~~~~~ll~~~~~-----~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~----------------~~~~~~a~ 142 (689)
.+|..+|..++..+.+ .|..+=....+..|.+-|+.-|..+|+.||..+=+ -.+-+-|.
T Consensus 44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i 123 (228)
T PF06239_consen 44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAI 123 (228)
T ss_pred cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHH
Confidence 4555555555555543 24444455555666666666666666666665432 12356788
Q ss_pred HHHHHHHHhCCCCchhHHHHHHHHHHhcCCh-HHHHHHHhhCC
Q 036237 143 QIHGLVFKLGFGFDKFVLSSLVSMYAKFGEI-DLGRRVFDAMD 184 (689)
Q Consensus 143 ~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~-~~A~~~~~~m~ 184 (689)
.++++|...|+-||..++..|++.+++.+.. .+..++.-.|+
T Consensus 124 ~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~p~~K~~rmmYWmp 166 (228)
T PF06239_consen 124 DLLEQMENNGVMPDKETEQMLLNIFGRKSHPMKKYRRMMYWMP 166 (228)
T ss_pred HHHHHHHHcCCCCcHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 9999999999999999999999999776642 33444433443
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=96.41 E-value=0.041 Score=48.66 Aligned_cols=68 Identities=18% Similarity=0.212 Sum_probs=54.2
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCcchHHHHHHHHH-----hCCCccCC
Q 036237 487 IWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMK-----KRGFRKDP 554 (689)
Q Consensus 487 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~~~~~g~~~~A~~~~~~m~-----~~~~~~~~ 554 (689)
....++..+...|+++.|...+++++..+|-+-..|..|+.+|...|+..+|.++++++. +-|+.|.+
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~ 136 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSP 136 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----H
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCH
Confidence 456677778889999999999999999999999999999999999999999999999874 45776554
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=96.41 E-value=1.4 Score=45.17 Aligned_cols=72 Identities=17% Similarity=0.160 Sum_probs=57.5
Q ss_pred HHHHHhCCCCC----CHHHHHHHHHH--HHhcCChHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCcchHHHHHHHH
Q 036237 473 KSTIESMPMRP----NFVIWMSLLSG--ARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMM 545 (689)
Q Consensus 473 ~~~~~~~~~~p----~~~~~~~ll~~--~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~~~~~g~~~~A~~~~~~m 545 (689)
..++++.++.| +...-|.|..| +..+|++..+.-...-+.++.| ++.+|..++-.+....++++|..++..+
T Consensus 444 e~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~L 521 (549)
T PF07079_consen 444 EDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQKL 521 (549)
T ss_pred HHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhC
Confidence 34455555544 44455666666 5678999999999999999999 8899999999999999999999999754
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.28 E-value=0.031 Score=56.02 Aligned_cols=84 Identities=12% Similarity=0.207 Sum_probs=70.7
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCcchHHHHHHHHHhCCCccCCcccEEEECCE
Q 036237 485 FVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGV 564 (689)
Q Consensus 485 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~ 564 (689)
..+++.|..++.+.+++..|+....+.++++|+|+.+++.=+.+|...|.++.|+..|+++.+.
T Consensus 257 ~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~---------------- 320 (397)
T KOG0543|consen 257 LACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKL---------------- 320 (397)
T ss_pred HHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHh----------------
Confidence 4467788888999999999999999999999999999999999999999999999999998862
Q ss_pred EEEEeeCCCCCcChHHHHHHHHHHHHHHHH
Q 036237 565 LHEFVVGDKSHPQTDEIHSKLSEMRNKLKA 594 (689)
Q Consensus 565 ~~~f~~~~~~~~~~~~~~~~l~~l~~~m~~ 594 (689)
.|..+.|...|..+.+++++
T Consensus 321 ----------~P~Nka~~~el~~l~~k~~~ 340 (397)
T KOG0543|consen 321 ----------EPSNKAARAELIKLKQKIRE 340 (397)
T ss_pred ----------CCCcHHHHHHHHHHHHHHHH
Confidence 24456666666666666654
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.28 E-value=0.83 Score=46.11 Aligned_cols=113 Identities=12% Similarity=0.031 Sum_probs=69.2
Q ss_pred cCCHHHHHHHHHhcCCCChh---------------hHHHHHHHHHHcCCHHHHHHHHHHHHHC---CCCCCHHHHHHHHH
Q 036237 364 CGSIESALTVFRAISKKKVG---------------HWTAMIVGLGMHGMATQALDLFNKMCRM---GMKPTAITFIGVLN 425 (689)
Q Consensus 364 ~g~~~~A~~~~~~~~~~~~~---------------~~~~li~~~~~~g~~~~A~~l~~~m~~~---g~~p~~~t~~~ll~ 425 (689)
.++.+.|...|++...-|+. .|..-..-..+.|++.+|.+.|.+.+.. .++|+...|.....
T Consensus 216 ~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~ 295 (486)
T KOG0550|consen 216 NDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRAL 295 (486)
T ss_pred ccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHh
Confidence 45566666666655542221 2333344566788888888888887762 23334445666666
Q ss_pred HHhccCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhC
Q 036237 426 ACSHAGLVNDGRRYFNMMINDYGIEPT-IEHYGCLVDILCRTGYLEEAKSTIESM 479 (689)
Q Consensus 426 a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~ 479 (689)
+..+.|+.++|+.--+... .+.|. +..|-.-..++.-.+.|++|.+-+++.
T Consensus 296 v~~rLgrl~eaisdc~~Al---~iD~syikall~ra~c~l~le~~e~AV~d~~~a 347 (486)
T KOG0550|consen 296 VNIRLGRLREAISDCNEAL---KIDSSYIKALLRRANCHLALEKWEEAVEDYEKA 347 (486)
T ss_pred hhcccCCchhhhhhhhhhh---hcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7778888888888777666 34443 233333334555667788887777764
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.27 E-value=0.017 Score=43.94 Aligned_cols=63 Identities=16% Similarity=0.230 Sum_probs=50.2
Q ss_pred HHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchhHH
Q 036237 461 DILCRTGYLEEAKSTIESM-PMRP-NFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYV 523 (689)
Q Consensus 461 ~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 523 (689)
..|.+.+++++|.+.++.+ ...| ++..|......+...|+++.|...++++++..|+++....
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~ 67 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARA 67 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHH
Confidence 5677888888888888876 3444 5567788888889999999999999999999998765443
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=96.27 E-value=0.047 Score=53.29 Aligned_cols=101 Identities=13% Similarity=0.088 Sum_probs=68.1
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhCC-CCC----CHHHHHHHH
Q 036237 419 TFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPT-IEHYGCLVDILCRTGYLEEAKSTIESMP-MRP----NFVIWMSLL 492 (689)
Q Consensus 419 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~p----~~~~~~~ll 492 (689)
.|...+......|++++|...|+.+.+.+.-.+- ...+-.+...|...|++++|...|+.+- ..| ....+..+.
T Consensus 145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg 224 (263)
T PRK10803 145 DYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVG 224 (263)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHH
Confidence 3444444445567777777777777754311110 2456677788888888888888877761 112 244555666
Q ss_pred HHHHhcCChHHHHHHHHHHhhcCCCCc
Q 036237 493 SGARNHGNKDIGEYAANNLIKVAPDTI 519 (689)
Q Consensus 493 ~~~~~~g~~~~a~~~~~~~~~~~p~~~ 519 (689)
..+...|+.+.|...++++++..|++.
T Consensus 225 ~~~~~~g~~~~A~~~~~~vi~~yP~s~ 251 (263)
T PRK10803 225 VIMQDKGDTAKAKAVYQQVIKKYPGTD 251 (263)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCcCCH
Confidence 777788999999999999999999764
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.25 E-value=2.4 Score=46.27 Aligned_cols=114 Identities=11% Similarity=0.089 Sum_probs=85.8
Q ss_pred CCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHH
Q 036237 414 KPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLS 493 (689)
Q Consensus 414 ~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~ 493 (689)
.-...|.+--+.-+...|...+|.++-.+.+ .||...|-.=+.+++..++|++-+++-+++. .+.-|.-+..
T Consensus 681 ~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk-----ipdKr~~wLk~~aLa~~~kweeLekfAkskk---sPIGy~PFVe 752 (829)
T KOG2280|consen 681 SFVDLSLHDTVTTLILIGQNKRAEQLKSDFK-----IPDKRLWWLKLTALADIKKWEELEKFAKSKK---SPIGYLPFVE 752 (829)
T ss_pred ccccCcHHHHHHHHHHccchHHHHHHHHhcC-----CcchhhHHHHHHHHHhhhhHHHHHHHHhccC---CCCCchhHHH
Confidence 3344456666667778888888888776654 4888888888899999999999888888764 2556777888
Q ss_pred HHHhcCChHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCcchHHHHHH
Q 036237 494 GARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVRE 543 (689)
Q Consensus 494 ~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~~~~~g~~~~A~~~~~ 543 (689)
+|.+.|+.++|.+.+-+.-.+ .-...+|.+.|++.+|.++--
T Consensus 753 ~c~~~~n~~EA~KYiprv~~l--------~ekv~ay~~~~~~~eAad~A~ 794 (829)
T KOG2280|consen 753 ACLKQGNKDEAKKYIPRVGGL--------QEKVKAYLRVGDVKEAADLAA 794 (829)
T ss_pred HHHhcccHHHHhhhhhccCCh--------HHHHHHHHHhccHHHHHHHHH
Confidence 999999999998876654322 256778888999988877643
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.09 E-value=0.42 Score=45.09 Aligned_cols=132 Identities=10% Similarity=-0.030 Sum_probs=82.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHH-----HH
Q 036237 385 WTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYG-----CL 459 (689)
Q Consensus 385 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~-----~l 459 (689)
-+.++..+.-.|.+.-.+.++++.++...+.+......|.+.-.+.|+.+.|..+|+...+..+ ..+....+ ..
T Consensus 180 my~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~-kL~~~q~~~~V~~n~ 258 (366)
T KOG2796|consen 180 MYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQ-KLDGLQGKIMVLMNS 258 (366)
T ss_pred HHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHh-hhhccchhHHHHhhh
Confidence 3556666666777888888888888765455666677777777888888888888887764422 22222222 23
Q ss_pred HHHHHhcCCHHHHHHHHHhCCCC--CCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCC
Q 036237 460 VDILCRTGYLEEAKSTIESMPMR--PNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPD 517 (689)
Q Consensus 460 i~~~~~~g~~~~A~~~~~~~~~~--p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 517 (689)
...|.-++++.+|...+++++.. .|+...|+-.-...-.|+...|++..+.+++..|.
T Consensus 259 a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~ 318 (366)
T KOG2796|consen 259 AFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPR 318 (366)
T ss_pred hhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCc
Confidence 33455566667777777666422 24444444444445556677777777777776664
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=96.09 E-value=0.0097 Score=46.02 Aligned_cols=60 Identities=18% Similarity=0.206 Sum_probs=38.0
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHhhc----C---CCCchhHHHHHHHHHhcCCcchHHHHHHHHH
Q 036237 487 IWMSLLSGARNHGNKDIGEYAANNLIKV----A---PDTIGCYVVLSNIYAAAGQWDKVSEVREMMK 546 (689)
Q Consensus 487 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~----~---p~~~~~~~~L~~~~~~~g~~~~A~~~~~~m~ 546 (689)
+++.+...+...|++++|+..+++++++ . |....++..++.+|...|++++|.+++++..
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4556666666666666666666666542 1 1124567777888888888888887777654
|
... |
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=95.81 E-value=0.015 Score=45.02 Aligned_cols=59 Identities=15% Similarity=0.079 Sum_probs=31.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhC-------C-CCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHhh
Q 036237 455 HYGCLVDILCRTGYLEEAKSTIESM-------P-MRPN-FVIWMSLLSGARNHGNKDIGEYAANNLIK 513 (689)
Q Consensus 455 ~~~~li~~~~~~g~~~~A~~~~~~~-------~-~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 513 (689)
+|+.+...|.+.|++++|++.+++. + ..|+ ..++..+...+...|++++|+..++++++
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 3444444455555555544444433 1 1122 34566666677777777777777776655
|
... |
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=95.79 E-value=0.82 Score=38.39 Aligned_cols=138 Identities=15% Similarity=0.107 Sum_probs=77.5
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHH
Q 036237 395 HGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKS 474 (689)
Q Consensus 395 ~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 474 (689)
.|..++..++..+.... .+..-++.++--....-+=+-..+.++.+-+-+.+ ..+|++.....
T Consensus 15 dG~V~qGveii~k~v~S---sni~E~NWvICNiiDaa~C~yvv~~LdsIGkiFDi--------------s~C~NlKrVi~ 77 (161)
T PF09205_consen 15 DGDVKQGVEIIEKTVNS---SNIKEYNWVICNIIDAADCDYVVETLDSIGKIFDI--------------SKCGNLKRVIE 77 (161)
T ss_dssp TT-HHHHHHHHHHHHHH---S-HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS-G--------------GG-S-THHHHH
T ss_pred hchHHHHHHHHHHHcCc---CCccccceeeeecchhhchhHHHHHHHHHhhhcCc--------------hhhcchHHHHH
Confidence 46666667776666542 23333443333222222333334444444322211 23444444444
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCcchHHHHHHHHHhCCCc
Q 036237 475 TIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFR 551 (689)
Q Consensus 475 ~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~~~~~g~~~~A~~~~~~m~~~~~~ 551 (689)
.+-.+. .+......-++....+|.-+.-.+++..+.+-+..+|....-++++|.+.|+..++.+++.+.-++|++
T Consensus 78 C~~~~n--~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 78 CYAKRN--KLSEYVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp HHHHTT-----HHHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred HHHHhc--chHHHHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 444443 244455666778889999999999999988655557889999999999999999999999999999875
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.74 E-value=1.8 Score=40.75 Aligned_cols=193 Identities=18% Similarity=0.174 Sum_probs=126.4
Q ss_pred hhHHhHHHhhHHhcCCHHHHHHHHHhcCC-----CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 036237 351 GVLGTLLIQMYSKCGSIESALTVFRAISK-----KKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLN 425 (689)
Q Consensus 351 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~ 425 (689)
..........+...+.+..+...+..... .....+..+...+...+++.++.+.+.........+. ........
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 137 (291)
T COG0457 59 AGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPD-LAEALLAL 137 (291)
T ss_pred hHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcc-hHHHHHHH
Confidence 34555566666667777777666665532 3344566666667777777788888877776433321 12222222
Q ss_pred -HHhccCcHHHHHHHHHHhHHhcCCCC----ChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC--HHHHHHHHHHHHh
Q 036237 426 -ACSHAGLVNDGRRYFNMMINDYGIEP----TIEHYGCLVDILCRTGYLEEAKSTIESM-PMRPN--FVIWMSLLSGARN 497 (689)
Q Consensus 426 -a~~~~g~~~~a~~~~~~~~~~~~~~p----~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~--~~~~~~ll~~~~~ 497 (689)
.+...|+++.|...+..... ..| ....+......+...++.++|...+.+. ...++ ...+..+...+..
T Consensus 138 ~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (291)
T COG0457 138 GALYELGDYEEALELYEKALE---LDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLK 214 (291)
T ss_pred HHHHHcCCHHHHHHHHHHHHh---cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHH
Confidence 67777888888888887752 222 2344444455567778888888888775 22333 5677777788888
Q ss_pred cCChHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCcchHHHHHHHHHh
Q 036237 498 HGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKK 547 (689)
Q Consensus 498 ~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~~~~~g~~~~A~~~~~~m~~ 547 (689)
.++.+.|...+.......|.....+..+...+...|.++++...+.+...
T Consensus 215 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (291)
T COG0457 215 LGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALE 264 (291)
T ss_pred cccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHH
Confidence 88888888888888888886555666777777767778888877776654
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=95.70 E-value=0.85 Score=42.85 Aligned_cols=160 Identities=14% Similarity=0.150 Sum_probs=90.3
Q ss_pred hhHHhcCCHHHHHHHHHhcCC--CC----hhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHhc-
Q 036237 359 QMYSKCGSIESALTVFRAISK--KK----VGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAI--TFIGVLNACSH- 429 (689)
Q Consensus 359 ~~~~~~g~~~~A~~~~~~~~~--~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~--t~~~ll~a~~~- 429 (689)
..+...|++++|.+.|+.+.. |+ ....-.++.++.+.|++++|...|+++.+. -|+.. -+...+.+.+.
T Consensus 13 ~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~--yP~~~~~~~A~Y~~g~~~~ 90 (203)
T PF13525_consen 13 LEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL--YPNSPKADYALYMLGLSYY 90 (203)
T ss_dssp HHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH---TT-TTHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCcchhhHHHHHHHHHH
Confidence 345566777777777777764 21 224556677788888888888888887763 34322 22222222221
Q ss_pred ------------cCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHH--HHHHHHHH
Q 036237 430 ------------AGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVI--WMSLLSGA 495 (689)
Q Consensus 430 ------------~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~--~~~ll~~~ 495 (689)
.+...+|...|+.+ +.-|-......+|...+..+. +... -..+..-|
T Consensus 91 ~~~~~~~~~~~D~~~~~~A~~~~~~l----------------i~~yP~S~y~~~A~~~l~~l~---~~la~~e~~ia~~Y 151 (203)
T PF13525_consen 91 KQIPGILRSDRDQTSTRKAIEEFEEL----------------IKRYPNSEYAEEAKKRLAELR---NRLAEHELYIARFY 151 (203)
T ss_dssp HHHHHHH-TT---HHHHHHHHHHHHH----------------HHH-TTSTTHHHHHHHHHHHH---HHHHHHHHHHHHHH
T ss_pred HhCccchhcccChHHHHHHHHHHHHH----------------HHHCcCchHHHHHHHHHHHHH---HHHHHHHHHHHHHH
Confidence 11223344444444 444444444555555444432 1111 11244557
Q ss_pred HhcCChHHHHHHHHHHhhcCCCCch---hHHHHHHHHHhcCCcchHH
Q 036237 496 RNHGNKDIGEYAANNLIKVAPDTIG---CYVVLSNIYAAAGQWDKVS 539 (689)
Q Consensus 496 ~~~g~~~~a~~~~~~~~~~~p~~~~---~~~~L~~~~~~~g~~~~A~ 539 (689)
.+.|.+..|..-++.+++.-|+.+. +...|+.+|.+.|..+.+.
T Consensus 152 ~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 152 YKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp HCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 8889999999999999999887643 4677888899999887443
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=95.58 E-value=0.3 Score=48.14 Aligned_cols=163 Identities=9% Similarity=0.072 Sum_probs=102.4
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHC-CCCCC---HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCC--C--Chh
Q 036237 383 GHWTAMIVGLGMHGMATQALDLFNKMCRM-GMKPT---AITFIGVLNACSHAGLVNDGRRYFNMMINDYGIE--P--TIE 454 (689)
Q Consensus 383 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~-g~~p~---~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~--p--~~~ 454 (689)
.+|-.+..++-+.-++.+++.+-+.-... |..|. .....++..|....+.++++++.|+...+-..-. | ...
T Consensus 84 ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElq 163 (518)
T KOG1941|consen 84 EAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQ 163 (518)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeee
Confidence 35566666666666666666655543332 33332 1223345566667778888888888776322111 2 146
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhC-------CCCC-----CHHHHHHHHHHHHhcCChHHHHHHHHHHhhc--CCCC--
Q 036237 455 HYGCLVDILCRTGYLEEAKSTIESM-------PMRP-----NFVIWMSLLSGARNHGNKDIGEYAANNLIKV--APDT-- 518 (689)
Q Consensus 455 ~~~~li~~~~~~g~~~~A~~~~~~~-------~~~p-----~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~--~p~~-- 518 (689)
+|..|...|.+..++++|.-+..+. .++. ...+..-+.-+++..|.+..|.+..+++.++ ...|
T Consensus 164 vcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra 243 (518)
T KOG1941|consen 164 VCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRA 243 (518)
T ss_pred hhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChH
Confidence 7888889999999888887666554 2221 1122334556788889888888888887662 2223
Q ss_pred --chhHHHHHHHHHhcCCcchHHHHHHHH
Q 036237 519 --IGCYVVLSNIYAAAGQWDKVSEVREMM 545 (689)
Q Consensus 519 --~~~~~~L~~~~~~~g~~~~A~~~~~~m 545 (689)
......++++|...|+.+.|..-++..
T Consensus 244 ~~arc~~~~aDIyR~~gd~e~af~rYe~A 272 (518)
T KOG1941|consen 244 LQARCLLCFADIYRSRGDLERAFRRYEQA 272 (518)
T ss_pred HHHHHHHHHHHHHHhcccHhHHHHHHHHH
Confidence 334557889999999888887766653
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.32 E-value=4 Score=41.85 Aligned_cols=134 Identities=12% Similarity=0.068 Sum_probs=98.5
Q ss_pred ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhH-HHH
Q 036237 381 KVGHWTAMIVGLGMHGMATQALDLFNKMCRMG-MKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEH-YGC 458 (689)
Q Consensus 381 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~-~~~ 458 (689)
-...|...+..-.+..-.+.|..+|-+..+.| +.++...+++++.-++ .|+..-|..+|+.-... -||... -+-
T Consensus 396 ~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~---f~d~~~y~~k 471 (660)
T COG5107 396 LTFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK---FPDSTLYKEK 471 (660)
T ss_pred hhhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh---CCCchHHHHH
Confidence 34567777777777777888889999988888 6677778888887655 46778888888876632 344433 345
Q ss_pred HHHHHHhcCCHHHHHHHHHhCC--CCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCC
Q 036237 459 LVDILCRTGYLEEAKSTIESMP--MRPN--FVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDT 518 (689)
Q Consensus 459 li~~~~~~g~~~~A~~~~~~~~--~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 518 (689)
.+.-+.+.++-+.|..+|+..- +..+ ..+|..++.--..-|++..+..+-+++.++-|..
T Consensus 472 yl~fLi~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~pQe 535 (660)
T COG5107 472 YLLFLIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVPQE 535 (660)
T ss_pred HHHHHHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcCcH
Confidence 6677788888888999998541 2223 4578888888888888888888888888888864
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.13 E-value=2.7 Score=40.09 Aligned_cols=167 Identities=17% Similarity=0.219 Sum_probs=92.7
Q ss_pred HhcCCHHHHHHHHHhcCCCCh------hhHHHHHHHHHHcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHhc-----
Q 036237 362 SKCGSIESALTVFRAISKKKV------GHWTAMIVGLGMHGMATQALDLFNKMCRM-GMKPTAITFIGVLNACSH----- 429 (689)
Q Consensus 362 ~~~g~~~~A~~~~~~~~~~~~------~~~~~li~~~~~~g~~~~A~~l~~~m~~~-g~~p~~~t~~~ll~a~~~----- 429 (689)
.+.|++++|.+.|+.+..+.+ .+--.++-++.+.+++++|+..+++.... +-.|| .-|..-|.+++.
T Consensus 45 L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n-~dY~~YlkgLs~~~~i~ 123 (254)
T COG4105 45 LQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPN-ADYAYYLKGLSYFFQID 123 (254)
T ss_pred HhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCC-hhHHHHHHHHHHhccCC
Confidence 356777777777777765322 13334556667777888888877777663 22233 233333333331
Q ss_pred --cCcHH---HHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHH--HHHHHHHHhcCChH
Q 036237 430 --AGLVN---DGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIW--MSLLSGARNHGNKD 502 (689)
Q Consensus 430 --~g~~~---~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~--~~ll~~~~~~g~~~ 502 (689)
..+.. +|..-|+..+.++ |+. .--.+|..-+.... |.... ..+..-|.+.|.+.
T Consensus 124 ~~~rDq~~~~~A~~~f~~~i~ry---PnS-------------~Ya~dA~~~i~~~~---d~LA~~Em~IaryY~kr~~~~ 184 (254)
T COG4105 124 DVTRDQSAARAAFAAFKELVQRY---PNS-------------RYAPDAKARIVKLN---DALAGHEMAIARYYLKRGAYV 184 (254)
T ss_pred ccccCHHHHHHHHHHHHHHHHHC---CCC-------------cchhhHHHHHHHHH---HHHHHHHHHHHHHHHHhcChH
Confidence 11222 2222333333221 221 11112221111110 11111 23445578889999
Q ss_pred HHHHHHHHHhhcCCCCc---hhHHHHHHHHHhcCCcchHHHHHHHHHhC
Q 036237 503 IGEYAANNLIKVAPDTI---GCYVVLSNIYAAAGQWDKVSEVREMMKKR 548 (689)
Q Consensus 503 ~a~~~~~~~~~~~p~~~---~~~~~L~~~~~~~g~~~~A~~~~~~m~~~ 548 (689)
.|..-++.+++--|+.+ ..+..|.++|.+.|..++|...-+-+...
T Consensus 185 AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N 233 (254)
T COG4105 185 AAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGAN 233 (254)
T ss_pred HHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhc
Confidence 99999999999766654 45667888899999999998887766543
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=95.11 E-value=0.28 Score=41.77 Aligned_cols=48 Identities=17% Similarity=0.299 Sum_probs=23.9
Q ss_pred CCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHH
Q 036237 413 MKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLV 460 (689)
Q Consensus 413 ~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li 460 (689)
..|+..+..+++.+|+..|++..|.++.+...+.|+++-+..+|..|+
T Consensus 48 l~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll 95 (126)
T PF12921_consen 48 LYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLL 95 (126)
T ss_pred CCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 344555555555555555555555555555555444444444444443
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=95.07 E-value=0.62 Score=43.77 Aligned_cols=51 Identities=18% Similarity=0.240 Sum_probs=28.9
Q ss_pred HHHHHhccCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCCHHHHH
Q 036237 423 VLNACSHAGLVNDGRRYFNMMINDYGIEPT-IEHYGCLVDILCRTGYLEEAK 473 (689)
Q Consensus 423 ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~ 473 (689)
+..-|.+.|.+..|..-++.+++++.-.+. ......|+..|.+.|..+.|.
T Consensus 147 ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 147 IARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp HHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 345566677777777777777755422222 244556667777777766443
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.07 E-value=0.22 Score=41.57 Aligned_cols=90 Identities=17% Similarity=0.140 Sum_probs=68.3
Q ss_pred HHHHhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCc----hhHHHHHHHHHhcCC
Q 036237 461 DILCRTGYLEEAKSTIESM-PMR-PNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTI----GCYVVLSNIYAAAGQ 534 (689)
Q Consensus 461 ~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~----~~~~~L~~~~~~~g~ 534 (689)
-+++..|++++|++.|.+. .+- .....||.-..+++-+|+.++|..-+++++++.-+.. .+|+.-+.+|...|+
T Consensus 51 valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~ 130 (175)
T KOG4555|consen 51 IALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGN 130 (175)
T ss_pred HHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCc
Confidence 3566778888888888765 222 3667888888899999999999999999988553322 246777888888999
Q ss_pred cchHHHHHHHHHhCCC
Q 036237 535 WDKVSEVREMMKKRGF 550 (689)
Q Consensus 535 ~~~A~~~~~~m~~~~~ 550 (689)
.++|+.-|+...+-|-
T Consensus 131 dd~AR~DFe~AA~LGS 146 (175)
T KOG4555|consen 131 DDAARADFEAAAQLGS 146 (175)
T ss_pred hHHHHHhHHHHHHhCC
Confidence 9999998988877664
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=95.06 E-value=0.13 Score=53.05 Aligned_cols=60 Identities=13% Similarity=0.061 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCCh----hHHHHHHHHHHhcCCHHHHHHHHHhC
Q 036237 417 AITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTI----EHYGCLVDILCRTGYLEEAKSTIESM 479 (689)
Q Consensus 417 ~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~----~~~~~li~~~~~~g~~~~A~~~~~~~ 479 (689)
...++.+..+|...|++++|+..|+..+ .+.|+. ..|..+..+|...|++++|.+.++++
T Consensus 75 a~a~~NLG~AL~~lGryeEAIa~f~rAL---eL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrA 138 (453)
T PLN03098 75 AEDAVNLGLSLFSKGRVKDALAQFETAL---ELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTA 138 (453)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHH---hhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4467777778888888888888888777 355663 24777888888888888888877775
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.06 E-value=2.3 Score=39.89 Aligned_cols=88 Identities=14% Similarity=0.109 Sum_probs=54.7
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhCC-------CCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHhh----cCCCCchh
Q 036237 454 EHYGCLVDILCRTGYLEEAKSTIESMP-------MRPNF-VIWMSLLSGARNHGNKDIGEYAANNLIK----VAPDTIGC 521 (689)
Q Consensus 454 ~~~~~li~~~~~~g~~~~A~~~~~~~~-------~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~----~~p~~~~~ 521 (689)
..|......|.+..+++||-..|.+-. .-|+. ..+.+.+-.+....|+..|++.++.--+ ..|++..+
T Consensus 151 el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~ 230 (308)
T KOG1585|consen 151 ELYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRS 230 (308)
T ss_pred HHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHH
Confidence 345555667777888888776665542 11232 2344555555666788888888887554 45667777
Q ss_pred HHHHHHHHHhcCCcchHHHHH
Q 036237 522 YVVLSNIYAAAGQWDKVSEVR 542 (689)
Q Consensus 522 ~~~L~~~~~~~g~~~~A~~~~ 542 (689)
...|+.+| ..|+.+++..+.
T Consensus 231 lenLL~ay-d~gD~E~~~kvl 250 (308)
T KOG1585|consen 231 LENLLTAY-DEGDIEEIKKVL 250 (308)
T ss_pred HHHHHHHh-ccCCHHHHHHHH
Confidence 77777776 456666655544
|
|
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=94.96 E-value=6.3 Score=42.16 Aligned_cols=419 Identities=12% Similarity=0.108 Sum_probs=228.5
Q ss_pred HHHhcccC-CCChhhHHHHHHHHHhCCCchHHHHHHHHhHhCCCCCCccc-HHHHHHHHHhcCChHHHHHHHHHHHHhCC
Q 036237 76 SIFDRILQ-HPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFT-LPCVIKGAARLGAIKEGKQIHGLVFKLGF 153 (689)
Q Consensus 76 ~~f~~~~~-~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t-~~~ll~~~~~~~~~~~a~~~~~~~~~~g~ 153 (689)
+.++..+. .-+...|+.+|.---.....+.+...+..++.. .|..+- |.....-=.+.|..+.+.++|++.+. |+
T Consensus 33 ~~we~~~~~~~~f~~wt~li~~~~~~~~~~~~r~~y~~fL~k--yPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~-ai 109 (577)
T KOG1258|consen 33 DYWEILSNDSLDFDAWTTLIQENDSIEDVDALREVYDIFLSK--YPLCYGYWKKFADYEYKLGNAENSVKVFERGVQ-AI 109 (577)
T ss_pred hHhhccccchhcccchHHHHhccCchhHHHHHHHHHHHHHhh--CccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-hh
Confidence 33444432 345567888887666666667777778887754 454432 22222333467888889999998875 45
Q ss_pred CCchhHHHHHHHHHH-hcCChHHHHHHHhhCCC------CCeehHHHHHHHHHhCCChHHHHHHHhhCCCCCcchHHHHH
Q 036237 154 GFDKFVLSSLVSMYA-KFGEIDLGRRVFDAMDD------KDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDRDLFSWTCLV 226 (689)
Q Consensus 154 ~~~~~~~~~li~~~~-~~g~~~~A~~~~~~m~~------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~d~~~~~~li 226 (689)
+..+..|........ ..|+.+..++.|+...+ .+...|-..|.--..++++.....++++..+-....|+...
T Consensus 110 p~SvdlW~~Y~~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRileiP~~~~~~~f 189 (577)
T KOG1258|consen 110 PLSVDLWLSYLAFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEIPLHQLNRHF 189 (577)
T ss_pred hhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhhhhhHhHHHH
Confidence 667777776665544 45677777777776653 34556888887777778888888888887764444444333
Q ss_pred HHHHh---CC------ChHHHHHHHhhcCcCCcchHHHHHHHHHhcC-CHHHHHHHHHhcCCCChHHHHHHHHHHHHcCC
Q 036237 227 DGFSK---CG------KVEIAREIFYRMPNRNLVSWNAMINGYMKAG-DVDSACELFDDMEIRDLITWNSMIAGYELNGR 296 (689)
Q Consensus 227 ~~~~~---~g------~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~ 296 (689)
.-|.+ .. ..+++.++-....... .-...+ ..+.-....+....+. +.
T Consensus 190 ~~f~~~l~~~~~~~l~~~d~~~~l~~~~~~~~---------~~~~~~~~~e~~~~~v~~~~~~s--------------~~ 246 (577)
T KOG1258|consen 190 DRFKQLLNQNEEKILLSIDELIQLRSDVAERS---------KITHSQEPLEELEIGVKDSTDPS--------------KS 246 (577)
T ss_pred HHHHHHHhcCChhhhcCHHHHHHHhhhHHhhh---------hcccccChhHHHHHHHhhccCcc--------------ch
Confidence 33221 11 1111111111100000 000000 0001111111111110 00
Q ss_pred hHHHHHHHHHhccCCCCcChhhHHHHHHHHHcccchhhHHHHHHHHHHhC-------CccchhHHhHHHhhHHhcCCHHH
Q 036237 297 FMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNG-------FVVDGVLGTLLIQMYSKCGSIES 369 (689)
Q Consensus 297 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g-------~~~~~~~~~~li~~~~~~g~~~~ 369 (689)
.+++.....+... .--..+-........+..++.-++.- ..++..+|..-++--.+.|+.+.
T Consensus 247 l~~~~~~l~~~~~-----------~~~~~~~~s~~~~~kr~~fE~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~ 315 (577)
T KOG1258|consen 247 LTEEKTILKRIVS-----------IHEKVYQKSEEEEEKRWGFEEGIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSR 315 (577)
T ss_pred hhHHHHHHHHHHH-----------HHHHHHHhhHhHHHHHHhhhhhccccccccCcccHHHHHHHHHHhhhhhhcccHHH
Confidence 0111100000000 00000000111111112222222211 12345667777777788899999
Q ss_pred HHHHHHhcCCC---ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHh
Q 036237 370 ALTVFRAISKK---KVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMIND 446 (689)
Q Consensus 370 A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~ 446 (689)
+.-.|++..-+ -...|--.+.-....|+.+-|-.++....+--++-...+-..-..-+-..|+++.|..+++.+.++
T Consensus 316 ~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e 395 (577)
T KOG1258|consen 316 VFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARFEESNGNFDDAKVILQRIESE 395 (577)
T ss_pred HHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHHHHhhccHHHHHHHHHHHHhh
Confidence 99888887654 233555555555555888888877776665433322222222223355678999999999999875
Q ss_pred cCCCCCh-hHHHHHHHHHHhcCCHHHHH---HHHHhC-CCCCCHHHHHHHHHH-----HHhcCChHHHHHHHHHHhhcCC
Q 036237 447 YGIEPTI-EHYGCLVDILCRTGYLEEAK---STIESM-PMRPNFVIWMSLLSG-----ARNHGNKDIGEYAANNLIKVAP 516 (689)
Q Consensus 447 ~~~~p~~-~~~~~li~~~~~~g~~~~A~---~~~~~~-~~~p~~~~~~~ll~~-----~~~~g~~~~a~~~~~~~~~~~p 516 (689)
. |+. ..-.--+....+.|..+.+. +++... +.+-+..+...+.-- +...++.+.|..++.++.+..|
T Consensus 396 --~-pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~~~ 472 (577)
T KOG1258|consen 396 --Y-PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRYKIREDADLARIILLEANDILP 472 (577)
T ss_pred --C-CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhcCC
Confidence 3 663 33344566778899999888 555443 222233333333222 3455899999999999999999
Q ss_pred CCchhHHHHHHHHHhcCC
Q 036237 517 DTIGCYVVLSNIYAAAGQ 534 (689)
Q Consensus 517 ~~~~~~~~L~~~~~~~g~ 534 (689)
++...|..+++.....+.
T Consensus 473 ~~k~~~~~~~~~~~~~~~ 490 (577)
T KOG1258|consen 473 DCKVLYLELIRFELIQPS 490 (577)
T ss_pred ccHHHHHHHHHHHHhCCc
Confidence 998899988888766553
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=94.80 E-value=0.32 Score=41.38 Aligned_cols=51 Identities=20% Similarity=0.171 Sum_probs=32.9
Q ss_pred CCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC----CCCCCHHHHHHHHHHHHhc
Q 036237 448 GIEPTIEHYGCLVDILCRTGYLEEAKSTIESM----PMRPNFVIWMSLLSGARNH 498 (689)
Q Consensus 448 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~----~~~p~~~~~~~ll~~~~~~ 498 (689)
.+.|+..+..+++.+|+..|++..|.++++.. +++-+..+|..|+.-+...
T Consensus 47 pl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~v~ 101 (126)
T PF12921_consen 47 PLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAYVL 101 (126)
T ss_pred CCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHh
Confidence 45566777777777777777777777776654 3444566676666654443
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.77 E-value=0.23 Score=47.17 Aligned_cols=100 Identities=17% Similarity=0.170 Sum_probs=81.2
Q ss_pred HHHHHHHhcC--CCChhhHHHHHHHHHHc-----CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC----------
Q 036237 369 SALTVFRAIS--KKKVGHWTAMIVGLGMH-----GMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAG---------- 431 (689)
Q Consensus 369 ~A~~~~~~~~--~~~~~~~~~li~~~~~~-----g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g---------- 431 (689)
..+..|..+. ++|-.+|-+++..|..+ +..+=....++.|.+.|+.-|..+|+.||+.+-+..
T Consensus 52 ~~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~ 131 (406)
T KOG3941|consen 52 HVEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKV 131 (406)
T ss_pred chhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHH
Confidence 3456677776 57888898888888764 566667777899999999999999999999876533
Q ss_pred ------cHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCH
Q 036237 432 ------LVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYL 469 (689)
Q Consensus 432 ------~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~ 469 (689)
.-+=++.++++|. .+|+.||.++-..|+.++++.|..
T Consensus 132 F~HYP~QQ~C~I~vLeqME-~hGVmPdkE~e~~lvn~FGr~~~p 174 (406)
T KOG3941|consen 132 FLHYPQQQNCAIKVLEQME-WHGVMPDKEIEDILVNAFGRWNFP 174 (406)
T ss_pred HhhCchhhhHHHHHHHHHH-HcCCCCchHHHHHHHHHhcccccc
Confidence 2244789999998 679999999999999999999864
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.66 E-value=1.2 Score=43.30 Aligned_cols=101 Identities=16% Similarity=0.077 Sum_probs=59.4
Q ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcC---CHHHHHHHHHhC-CCCC-CHHHHHHH
Q 036237 417 AITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTG---YLEEAKSTIESM-PMRP-NFVIWMSL 491 (689)
Q Consensus 417 ~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g---~~~~A~~~~~~~-~~~p-~~~~~~~l 491 (689)
...|..|..+|...|+.+.|...|....+- -.+++..+..+..++.... .-.++..+|+++ ..+| |+.+..-|
T Consensus 156 ~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL--~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~lL 233 (287)
T COG4235 156 AEGWDLLGRAYMALGRASDALLAYRNALRL--AGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSLL 233 (287)
T ss_pred chhHHHHHHHHHHhcchhHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHHH
Confidence 445666666666666666666666655531 1123444444544443222 244566666665 3344 44455666
Q ss_pred HHHHHhcCChHHHHHHHHHHhhcCCCCc
Q 036237 492 LSGARNHGNKDIGEYAANNLIKVAPDTI 519 (689)
Q Consensus 492 l~~~~~~g~~~~a~~~~~~~~~~~p~~~ 519 (689)
...+...|++.+|...++.+++..|.+.
T Consensus 234 A~~afe~g~~~~A~~~Wq~lL~~lp~~~ 261 (287)
T COG4235 234 AFAAFEQGDYAEAAAAWQMLLDLLPADD 261 (287)
T ss_pred HHHHHHcccHHHHHHHHHHHHhcCCCCC
Confidence 6677888888888888888888766553
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=94.65 E-value=0.22 Score=47.61 Aligned_cols=57 Identities=16% Similarity=0.171 Sum_probs=26.5
Q ss_pred HHHHHHhcCChHHHHHHHHHHhhcCCC---CchhHHHHHHHHHhcCCcchHHHHHHHHHh
Q 036237 491 LLSGARNHGNKDIGEYAANNLIKVAPD---TIGCYVVLSNIYAAAGQWDKVSEVREMMKK 547 (689)
Q Consensus 491 ll~~~~~~g~~~~a~~~~~~~~~~~p~---~~~~~~~L~~~~~~~g~~~~A~~~~~~m~~ 547 (689)
|..++...|+++.|...|..+.+-.|+ -|..+.-|+.+..+.|+.++|...++++.+
T Consensus 184 LGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d~A~atl~qv~k 243 (262)
T COG1729 184 LGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTDEACATLQQVIK 243 (262)
T ss_pred HHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 344444444444444444444443322 234444555555555555555555554443
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=94.60 E-value=0.7 Score=39.83 Aligned_cols=60 Identities=17% Similarity=0.185 Sum_probs=40.8
Q ss_pred HHHHhcCCHHHHHHHHHhCC----CCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCch
Q 036237 461 DILCRTGYLEEAKSTIESMP----MRP-NFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIG 520 (689)
Q Consensus 461 ~~~~~~g~~~~A~~~~~~~~----~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 520 (689)
....+.|++++|.+.|+.+. ..| ....-..|+.++.+.+++++|...+++.++++|.++.
T Consensus 18 ~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~ 82 (142)
T PF13512_consen 18 QEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPN 82 (142)
T ss_pred HHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCC
Confidence 33446677777777776652 222 3345566778888888888888888888888887653
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=94.58 E-value=2.6 Score=36.70 Aligned_cols=85 Identities=15% Similarity=0.128 Sum_probs=46.2
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhhCCCCCeehHHHHHHHHHhCCCh
Q 036237 125 LPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEV 204 (689)
Q Consensus 125 ~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~ 204 (689)
...++..+...+.......+++.+++.+ ..+....|.++..|++.+ .+.....++. ..+......+++.|-+.+.+
T Consensus 10 ~~~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~-~~~ll~~l~~--~~~~yd~~~~~~~c~~~~l~ 85 (140)
T smart00299 10 VSEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYD-PQKEIERLDN--KSNHYDIEKVGKLCEKAKLY 85 (140)
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHC-HHHHHHHHHh--ccccCCHHHHHHHHHHcCcH
Confidence 3455666666666777777777777665 356667777777777653 2333344331 12233333444555555554
Q ss_pred HHHHHHHhh
Q 036237 205 EVAMKLFDE 213 (689)
Q Consensus 205 ~~A~~~~~~ 213 (689)
+++.-++.+
T Consensus 86 ~~~~~l~~k 94 (140)
T smart00299 86 EEAVELYKK 94 (140)
T ss_pred HHHHHHHHh
Confidence 444444443
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.57 E-value=0.33 Score=48.90 Aligned_cols=137 Identities=10% Similarity=0.028 Sum_probs=95.1
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCC
Q 036237 389 IVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGY 468 (689)
Q Consensus 389 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~ 468 (689)
...|.+.|++..|...|++.... |. +...-+.++..... ..-...+..|.-.|.+.++
T Consensus 215 Gn~~fK~gk~~~A~~~Yerav~~------------l~-~~~~~~~ee~~~~~---------~~k~~~~lNlA~c~lKl~~ 272 (397)
T KOG0543|consen 215 GNVLFKEGKFKLAKKRYERAVSF------------LE-YRRSFDEEEQKKAE---------ALKLACHLNLAACYLKLKE 272 (397)
T ss_pred hhHHHhhchHHHHHHHHHHHHHH------------hh-ccccCCHHHHHHHH---------HHHHHHhhHHHHHHHhhhh
Confidence 45677778888888777776541 00 00111112211111 1223456778888889999
Q ss_pred HHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCcchH-HHHHHHH
Q 036237 469 LEEAKSTIESM-PM-RPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKV-SEVREMM 545 (689)
Q Consensus 469 ~~~A~~~~~~~-~~-~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~~~~~g~~~~A-~~~~~~m 545 (689)
+.+|+....+. .. ++|+-..---..+|...|+++.|+..|+++++++|+|-.+-..|+.+-.+..+..+. .+++..|
T Consensus 273 ~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~kekk~y~~m 352 (397)
T KOG0543|consen 273 YKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEKEKKMYANM 352 (397)
T ss_pred HHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99998888775 33 346667777788999999999999999999999999988888888877766655544 7788888
Q ss_pred Hh
Q 036237 546 KK 547 (689)
Q Consensus 546 ~~ 547 (689)
-.
T Consensus 353 F~ 354 (397)
T KOG0543|consen 353 FA 354 (397)
T ss_pred hh
Confidence 64
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=94.47 E-value=0.073 Score=33.19 Aligned_cols=32 Identities=13% Similarity=0.121 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHhhcCCC
Q 036237 486 VIWMSLLSGARNHGNKDIGEYAANNLIKVAPD 517 (689)
Q Consensus 486 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 517 (689)
.+|..+...+...|++++|+..++++++++|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 46888888899999999999999999999886
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=94.46 E-value=1.9 Score=45.61 Aligned_cols=130 Identities=15% Similarity=0.095 Sum_probs=74.3
Q ss_pred hHHHHHHHHHhCCChHHHHHHHhhcCcCCcchHHHHHHHHHhcCCHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHH
Q 036237 221 SWTCLVDGFSKCGKVEIAREIFYRMPNRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEA 300 (689)
Q Consensus 221 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 300 (689)
-.+.++.-+-+.|..+.|+++-.. -..-.+...++|+++.|.++-++.. +...|..|.....+.|+++-|
T Consensus 297 ~~~~i~~fL~~~G~~e~AL~~~~D--------~~~rFeLAl~lg~L~~A~~~a~~~~--~~~~W~~Lg~~AL~~g~~~lA 366 (443)
T PF04053_consen 297 QGQSIARFLEKKGYPELALQFVTD--------PDHRFELALQLGNLDIALEIAKELD--DPEKWKQLGDEALRQGNIELA 366 (443)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHSS---------HHHHHHHHHHCT-HHHHHHHCCCCS--THHHHHHHHHHHHHTTBHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHhhcCC--------hHHHhHHHHhcCCHHHHHHHHHhcC--cHHHHHHHHHHHHHcCCHHHH
Confidence 355666666667777777666332 1334456667778887777766554 556788888888888888888
Q ss_pred HHHHHHhccCCCCcChhhHHHHHHHHHcccchhhHHHHHHHHHHhCCccchhHHhHHHhhHHhcCCHHHHHHHHH
Q 036237 301 LELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFR 375 (689)
Q Consensus 301 ~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 375 (689)
.+.|.+... +..++-.+...|+.+.-.++.......|- ++....++.-.|++++..+++.
T Consensus 367 e~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~~~------~n~af~~~~~lgd~~~cv~lL~ 426 (443)
T PF04053_consen 367 EECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEERGD------INIAFQAALLLGDVEECVDLLI 426 (443)
T ss_dssp HHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-------HHHHHHHHHHHT-HHHHHHHHH
T ss_pred HHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHccC------HHHHHHHHHHcCCHHHHHHHHH
Confidence 888877642 34445555556666555555555554441 2223333334455555544443
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.41 E-value=4.5 Score=37.99 Aligned_cols=197 Identities=16% Similarity=0.069 Sum_probs=131.3
Q ss_pred hhHHHHHHHHHcccchhhHHHHHHHHHHh-CCccchhHHhHHHhhHHhcCCHHHHHHHHHhcCCC--C-hhhHHHHHH-H
Q 036237 317 ATLVSALSAVAGLAVLNKGRWMHSYIVKN-GFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKK--K-VGHWTAMIV-G 391 (689)
Q Consensus 317 ~t~~~ll~a~~~~~~~~~a~~i~~~~~~~-g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~-~~~~~~li~-~ 391 (689)
..+......+...+.+..+...+...... ........+..+...+...+.+..+.+.+...... + ...+..... .
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (291)
T COG0457 60 GLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGA 139 (291)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHHH
Confidence 34444444455555555555555444432 22334455555666666677777888877776652 2 122333333 6
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCC----CHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhc
Q 036237 392 LGMHGMATQALDLFNKMCRMGMKP----TAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEP-TIEHYGCLVDILCRT 466 (689)
Q Consensus 392 ~~~~g~~~~A~~l~~~m~~~g~~p----~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~ 466 (689)
+...|++++|...|.+... ..| ....+......+...++.+.+...+..... .... ....+..+...+...
T Consensus 140 ~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 215 (291)
T COG0457 140 LYELGDYEEALELYEKALE--LDPELNELAEALLALGALLEALGRYEEALELLEKALK--LNPDDDAEALLNLGLLYLKL 215 (291)
T ss_pred HHHcCCHHHHHHHHHHHHh--cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHh--hCcccchHHHHHhhHHHHHc
Confidence 8889999999999999865 343 233444444556778899999999998884 2333 367788888999999
Q ss_pred CCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCC
Q 036237 467 GYLEEAKSTIESM-PMRPN-FVIWMSLLSGARNHGNKDIGEYAANNLIKVAPD 517 (689)
Q Consensus 467 g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 517 (689)
+.+++|...+... ...|+ ...+..+...+...++.+.+...+.+..+..|.
T Consensus 216 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 216 GKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred ccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 9999999998876 33444 455666666666777899999999999998886
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=94.41 E-value=0.66 Score=48.06 Aligned_cols=63 Identities=6% Similarity=-0.085 Sum_probs=40.7
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCcchHHHHHHHHH
Q 036237 484 NFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMK 546 (689)
Q Consensus 484 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~~~~~g~~~~A~~~~~~m~ 546 (689)
|+.....+..+....++.+.|...|+++..++|+.+.++...+....-.|+.++|.+.+++..
T Consensus 337 Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~al 399 (458)
T PRK11906 337 DGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSL 399 (458)
T ss_pred CHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 555555555555555666777777777777777666666666666666777777766666533
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=94.36 E-value=0.4 Score=42.28 Aligned_cols=70 Identities=19% Similarity=0.235 Sum_probs=38.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhH----HhcCCCCChhH
Q 036237 385 WTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMI----NDYGIEPTIEH 455 (689)
Q Consensus 385 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~----~~~~~~p~~~~ 455 (689)
...++..+...|++++|+.+.+.+.... +-|...+..++.++...|+..+|.+.|+.+. ++.|+.|+..+
T Consensus 65 ~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 65 LERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 3445555666777777777777766632 2244566677777777777777777766553 24566676544
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=94.32 E-value=3.4 Score=43.12 Aligned_cols=97 Identities=11% Similarity=0.174 Sum_probs=46.1
Q ss_pred HHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHH--HHHHHHHHHHhc
Q 036237 423 VLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPM--RPNFV--IWMSLLSGARNH 498 (689)
Q Consensus 423 ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~p~~~--~~~~ll~~~~~~ 498 (689)
+...+.+.|+.++|.+.|.+|.+++.......+...|+..|...+.+.++..++.+... -|... .|++.+--.+..
T Consensus 265 LAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALLkaRav 344 (539)
T PF04184_consen 265 LAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAALLKARAV 344 (539)
T ss_pred HHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHHHHHhh
Confidence 33344455555555555555553322111233444555555555666666555555431 12222 333332222222
Q ss_pred CC---------------hHHHHHHHHHHhhcCCCCc
Q 036237 499 GN---------------KDIGEYAANNLIKVAPDTI 519 (689)
Q Consensus 499 g~---------------~~~a~~~~~~~~~~~p~~~ 519 (689)
++ -..|.++..++++.+|.-|
T Consensus 345 ~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp 380 (539)
T PF04184_consen 345 GDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVP 380 (539)
T ss_pred ccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCc
Confidence 22 1235677888888888654
|
The molecular function of this protein is uncertain. |
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=94.29 E-value=7.4 Score=40.03 Aligned_cols=427 Identities=13% Similarity=0.085 Sum_probs=223.0
Q ss_pred CCCchHHHHHhhcccccCCCCHHHHHHHHhcccCCCCh---hhHHHHHHHHHhCCCchHHHHHHHHhHhCCCCCCcccHH
Q 036237 50 IYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSL---VLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLP 126 (689)
Q Consensus 50 ~~~~~~~~~ll~~~~~~~~g~~~~A~~~f~~~~~~~~~---~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~ 126 (689)
+.|...|-.||.-|.. .|..++-+++++++. .|-+ .+|..-+++-....+++....+|.+-+.... +...|.
T Consensus 39 PtnI~S~fqLiq~~~t--q~s~~~~re~yeq~~-~pfp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~l--~ldLW~ 113 (660)
T COG5107 39 PTNILSYFQLIQYLET--QESMDAEREMYEQLS-SPFPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKSL--NLDLWM 113 (660)
T ss_pred chhHHHHHHHHHHHhh--hhhHHHHHHHHHHhc-CCCccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhhc--cHhHHH
Confidence 5577889999999999 999999999999998 5544 3688888888888899999999999887643 455565
Q ss_pred HHHHHHHhcCChH------HHHHHHHHHHH-hCCCCch-hHHHHHHHHHH---hcC------ChHHHHHHHhhCCC-C--
Q 036237 127 CVIKGAARLGAIK------EGKQIHGLVFK-LGFGFDK-FVLSSLVSMYA---KFG------EIDLGRRVFDAMDD-K-- 186 (689)
Q Consensus 127 ~ll~~~~~~~~~~------~a~~~~~~~~~-~g~~~~~-~~~~~li~~~~---~~g------~~~~A~~~~~~m~~-~-- 186 (689)
..+.-..+.+..- .-.+.++..+. .+++|-. ..|+..+...- ..| ++|..++.+.++.. |
T Consensus 114 lYl~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqrid~iR~~Y~ral~tP~~ 193 (660)
T COG5107 114 LYLEYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQRIDKIRNGYMRALQTPMG 193 (660)
T ss_pred HHHHHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHcCccc
Confidence 5555444443222 12244555444 2444433 34555444332 122 34556666666553 1
Q ss_pred -------CeehHHHHHHHH-HhC--C----ChHHHHHHHhhCCC-------C---Ccc-----------hHHHHHHHHHh
Q 036237 187 -------DLVSWNCLIDGY-VKK--G----EVEVAMKLFDEMPD-------R---DLF-----------SWTCLVDGFSK 231 (689)
Q Consensus 187 -------~~~~~~~li~~~-~~~--g----~~~~A~~~~~~m~~-------~---d~~-----------~~~~li~~~~~ 231 (689)
|-..|..=+... ++. | -+-.|...+++... . +.. -|-..|..=..
T Consensus 194 nleklW~dy~~fE~e~N~~TarKfvge~sp~ym~ar~~yqe~~nlt~Gl~v~~~~~~Rt~nK~~r~s~S~WlNwIkwE~e 273 (660)
T COG5107 194 NLEKLWKDYENFELELNKITARKFVGETSPIYMSARQRYQEIQNLTRGLSVKNPINLRTANKAARTSDSNWLNWIKWEME 273 (660)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHhccccccCchhhhhhccccccccchhhhHhhHhhc
Confidence 111111111111 100 1 12234444443321 0 111 13333433222
Q ss_pred CC-----C-hH-HHHHHHhhcCc---CCcchHHHHHHHHHhcCCHHHHHHHHHhcCCCChHHHHH-HHHHHHHcCChHHH
Q 036237 232 CG-----K-VE-IAREIFYRMPN---RNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNS-MIAGYELNGRFMEA 300 (689)
Q Consensus 232 ~g-----~-~~-~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-li~~~~~~g~~~~A 300 (689)
.| + .. ...-+|.+... -.+.+|----.-+...++-+.|.+....-..-.+ +.+. +-..|.-..+.++.
T Consensus 274 n~l~L~~~~~~qRi~y~~~q~~~y~~~~~evw~dys~Y~~~isd~q~al~tv~rg~~~sp-sL~~~lse~yel~nd~e~v 352 (660)
T COG5107 274 NGLKLGGRPHEQRIHYIHNQILDYFYYAEEVWFDYSEYLIGISDKQKALKTVERGIEMSP-SLTMFLSEYYELVNDEEAV 352 (660)
T ss_pred CCcccCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhccHHHHHHHHHHhcccCCC-chheeHHHHHhhcccHHHH
Confidence 11 1 11 11122333222 1133343333444556677777776655332111 1111 12223333333333
Q ss_pred HHHHHHhccCCCCcChhhHHHHHHHHH---cccchhhHHHHHHHHHHhCCccchhHHhHHHhhHHhcCCHHHHHHHHHhc
Q 036237 301 LELLETMLIGDVLPNDATLVSALSAVA---GLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAI 377 (689)
Q Consensus 301 ~~~~~~m~~~g~~p~~~t~~~ll~a~~---~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 377 (689)
...|+...+. ...--+.+.+=+ ..|+++.-.++. .+. ...-..++..+++.-.+..-++.|+.+|-++
T Consensus 353 ~~~fdk~~q~-----L~r~ys~~~s~~~s~~D~N~e~~~Ell---~kr-~~k~t~v~C~~~N~v~r~~Gl~aaR~~F~k~ 423 (660)
T COG5107 353 YGCFDKCTQD-----LKRKYSMGESESASKVDNNFEYSKELL---LKR-INKLTFVFCVHLNYVLRKRGLEAARKLFIKL 423 (660)
T ss_pred hhhHHHHHHH-----HHHHHhhhhhhhhccccCCccccHHHH---HHH-HhhhhhHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 3333332210 000000000000 012232221111 111 1123456666777777777788888888777
Q ss_pred CC-----CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHH-HHHHHHHhccCcHHHHHHHHHHhHHhcCCCC
Q 036237 378 SK-----KKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITF-IGVLNACSHAGLVNDGRRYFNMMINDYGIEP 451 (689)
Q Consensus 378 ~~-----~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~-~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p 451 (689)
.+ +++..++++|.-++ .|++.-|..+|+--.. .-||...| .-.+.-+...++-+.|+.+|+..+. .+..
T Consensus 424 rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~--~f~d~~~y~~kyl~fLi~inde~naraLFetsv~--r~~~ 498 (660)
T COG5107 424 RKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLL--KFPDSTLYKEKYLLFLIRINDEENARALFETSVE--RLEK 498 (660)
T ss_pred hccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHH--hCCCchHHHHHHHHHHHHhCcHHHHHHHHHHhHH--HHHH
Confidence 64 46667888888666 4677788888886554 24554433 3345556677888899999986664 3333
Q ss_pred C--hhHHHHHHHHHHhcCCHHHHHHHHHhCC-CCCCHHHHHHHHHHHH
Q 036237 452 T--IEHYGCLVDILCRTGYLEEAKSTIESMP-MRPNFVIWMSLLSGAR 496 (689)
Q Consensus 452 ~--~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~p~~~~~~~ll~~~~ 496 (689)
+ ...|..+|+-=..-|++..+..+=+++. .-|...+-..+.+-|.
T Consensus 499 ~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~pQen~~evF~Sry~ 546 (660)
T COG5107 499 TQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVPQENLIEVFTSRYA 546 (660)
T ss_pred hhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcCcHhHHHHHHHHHh
Confidence 3 5788888888888899888887766663 2344444444444443
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=94.28 E-value=13 Score=43.20 Aligned_cols=26 Identities=23% Similarity=0.247 Sum_probs=17.3
Q ss_pred HHHHHHHHHhCC--CchHHHHHHHHhHh
Q 036237 90 YNLLIKCYVFNQ--RSHEALTLFCDLLD 115 (689)
Q Consensus 90 ~~~ll~~~~~~g--~~~~a~~~~~~m~~ 115 (689)
.-.+|.+|++.+ ..++++....+...
T Consensus 793 ~~~ilTs~vk~~~~~ie~aL~kI~~l~~ 820 (1265)
T KOG1920|consen 793 NLFILTSYVKSNPPEIEEALQKIKELQL 820 (1265)
T ss_pred hHHHHHHHHhcCcHHHHHHHHHHHHHHh
Confidence 346777888777 56667666666654
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.25 E-value=11 Score=41.72 Aligned_cols=100 Identities=10% Similarity=0.046 Sum_probs=56.7
Q ss_pred HHHHhcCChHHHHHHHHHHHHhCCCC---chhHHHHHHHHHHhcCChHHHHHHHhhCCCCCeehHHHHHHHHHhCCChHH
Q 036237 130 KGAARLGAIKEGKQIHGLVFKLGFGF---DKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEV 206 (689)
Q Consensus 130 ~~~~~~~~~~~a~~~~~~~~~~g~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~ 206 (689)
+.+.+.+.+++|..+-+... |..| -..++...|+.+.-.|++++|-...-.|...+..-|-.-+.-+...++...
T Consensus 364 ~Wll~~k~yeeAl~~~k~~~--~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn~~~eWe~~V~~f~e~~~l~~ 441 (846)
T KOG2066|consen 364 DWLLEKKKYEEALDAAKASI--GNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGNNAAEWELWVFKFAELDQLTD 441 (846)
T ss_pred HHHHHhhHHHHHHHHHHhcc--CCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcchHHHHHHHHHHhccccccch
Confidence 33444455555554433322 2233 234666777777777777777777777777777777777777766666554
Q ss_pred HHHHHhhCCC-CCcchHHHHHHHHHh
Q 036237 207 AMKLFDEMPD-RDLFSWTCLVDGFSK 231 (689)
Q Consensus 207 A~~~~~~m~~-~d~~~~~~li~~~~~ 231 (689)
...++-.-.. -+...|..++-.+..
T Consensus 442 Ia~~lPt~~~rL~p~vYemvLve~L~ 467 (846)
T KOG2066|consen 442 IAPYLPTGPPRLKPLVYEMVLVEFLA 467 (846)
T ss_pred hhccCCCCCcccCchHHHHHHHHHHH
Confidence 3333222221 144566666666655
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.11 E-value=2.4 Score=41.16 Aligned_cols=120 Identities=12% Similarity=0.105 Sum_probs=82.7
Q ss_pred HHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHH---HHHHHHhcCChH
Q 036237 426 ACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMS---LLSGARNHGNKD 502 (689)
Q Consensus 426 a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~---ll~~~~~~g~~~ 502 (689)
.....|++.+|...|+..... ..-+...--.|+..|...|+.++|..++..++.+-...-|.. -+..+.+..+..
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~--~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~ 220 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQA--APENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATP 220 (304)
T ss_pred hhhhccchhhHHHHHHHHHHh--CcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCC
Confidence 455678888888888887742 223356667788899999999999999999875533333333 222233333333
Q ss_pred HHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCcchHHHHHHHHHhC
Q 036237 503 IGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKR 548 (689)
Q Consensus 503 ~a~~~~~~~~~~~p~~~~~~~~L~~~~~~~g~~~~A~~~~~~m~~~ 548 (689)
+... ++.-...+|+|...-..|+..|...|+.++|.+.+=.+.++
T Consensus 221 ~~~~-l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~ 265 (304)
T COG3118 221 EIQD-LQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRR 265 (304)
T ss_pred CHHH-HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 2222 23344578999999999999999999999999887776554
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=94.10 E-value=2.8 Score=36.50 Aligned_cols=66 Identities=18% Similarity=0.207 Sum_probs=32.8
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhc-CCHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 036237 418 ITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRT-GYLEEAKSTIESMPMRPNFVIWMSLLSGAR 496 (689)
Q Consensus 418 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~-g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~ 496 (689)
.....++..|.+.+.++++..++..+.. +...++.+... ++.+.|.+++.+- .+...|..++..+.
T Consensus 70 yd~~~~~~~c~~~~l~~~~~~l~~k~~~----------~~~Al~~~l~~~~d~~~a~~~~~~~---~~~~lw~~~~~~~l 136 (140)
T smart00299 70 YDIEKVGKLCEKAKLYEEAVELYKKDGN----------FKDAIVTLIEHLGNYEKAIEYFVKQ---NNPELWAEVLKALL 136 (140)
T ss_pred CCHHHHHHHHHHcCcHHHHHHHHHhhcC----------HHHHHHHHHHcccCHHHHHHHHHhC---CCHHHHHHHHHHHH
Confidence 3344455566666666666555554431 12223333333 5566666666652 24455655555443
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=94.08 E-value=0.13 Score=31.84 Aligned_cols=33 Identities=15% Similarity=0.201 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCC
Q 036237 486 VIWMSLLSGARNHGNKDIGEYAANNLIKVAPDT 518 (689)
Q Consensus 486 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 518 (689)
..|..+...+...|++++|+..++++++++|++
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 356777788888888888888888888888864
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=94.00 E-value=1.9 Score=44.01 Aligned_cols=32 Identities=22% Similarity=0.127 Sum_probs=15.3
Q ss_pred CCCchHHHHHHHHhHhCCCCCCcccHHHHHHH
Q 036237 100 NQRSHEALTLFCDLLDRFLLPDNFTLPCVIKG 131 (689)
Q Consensus 100 ~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~ 131 (689)
.|+.++|++++..+......++..||..+.+.
T Consensus 195 ~gdre~Al~il~~~l~~~~~~~~d~~gL~GRI 226 (374)
T PF13281_consen 195 PGDREKALQILLPVLESDENPDPDTLGLLGRI 226 (374)
T ss_pred CCCHHHHHHHHHHHHhccCCCChHHHHHHHHH
Confidence 45555555555554433334444454444433
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=93.87 E-value=6.5 Score=38.29 Aligned_cols=147 Identities=11% Similarity=0.061 Sum_probs=95.8
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcC
Q 036237 389 IVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPT-IEHYGCLVDILCRTG 467 (689)
Q Consensus 389 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g 467 (689)
.......|++.+|..+|+...... .-+...-..+..++...|+++.|..++..+-.+ ..-+ ......-+..+.+..
T Consensus 141 ~~~~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~--~~~~~~~~l~a~i~ll~qaa 217 (304)
T COG3118 141 AKELIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPLQ--AQDKAAHGLQAQIELLEQAA 217 (304)
T ss_pred hhhhhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCccc--chhhHHHHHHHHHHHHHHHh
Confidence 345567788888888888887742 222345556777888889998888888876532 1111 112233455666666
Q ss_pred CHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHhhc--CCCCchhHHHHHHHHHhcCCcchH
Q 036237 468 YLEEAKSTIESMPMRP-NFVIWMSLLSGARNHGNKDIGEYAANNLIKV--APDTIGCYVVLSNIYAAAGQWDKV 538 (689)
Q Consensus 468 ~~~~A~~~~~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~--~p~~~~~~~~L~~~~~~~g~~~~A 538 (689)
...+...+-.+..-.| |...-..+...+...|+.+.|...+-.+++. .-.+...-..|+.++.-.|.-+.+
T Consensus 218 ~~~~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~~Dp~ 291 (304)
T COG3118 218 ATPEIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGPADPL 291 (304)
T ss_pred cCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCCCCHH
Confidence 6665555555554455 5666677778888888988888877777663 344566777777777777755543
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=93.74 E-value=14 Score=41.24 Aligned_cols=142 Identities=15% Similarity=0.075 Sum_probs=76.5
Q ss_pred hhcccccCCCCHHHHHHHHhcccCCCChhhHHHHHHH----HHhCCCchHHHHHHHHhHhCCCCCCcccHHHHHHHHHhc
Q 036237 60 LSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLIKC----YVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARL 135 (689)
Q Consensus 60 l~~~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~ll~~----~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~ 135 (689)
+++..+ ..-++.|..+-..-. -+...-..+... +.+.|++++|...|-+-... +.| ..+++-+...
T Consensus 341 L~iL~k--K~ly~~Ai~LAk~~~--~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~-----s~Vi~kfLda 410 (933)
T KOG2114|consen 341 LDILFK--KNLYKVAINLAKSQH--LDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEP-----SEVIKKFLDA 410 (933)
T ss_pred HHHHHH--hhhHHHHHHHHHhcC--CCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CCh-----HHHHHHhcCH
Confidence 444444 455666666544432 233333333333 34577888888777665532 222 2344555555
Q ss_pred CChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhhCCCCCee-hHHHHHHHHHhCCChHHHHHHHh
Q 036237 136 GAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLV-SWNCLIDGYVKKGEVEVAMKLFD 212 (689)
Q Consensus 136 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-~~~~li~~~~~~g~~~~A~~~~~ 212 (689)
..+..-..+++.+.+.|+. +..--..|+.+|.+.++.++-.+..+...+.... -.-..+..+-+.+-.++|.-+-.
T Consensus 411 q~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~~g~~~fd~e~al~Ilr~snyl~~a~~LA~ 487 (933)
T KOG2114|consen 411 QRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCDKGEWFFDVETALEILRKSNYLDEAELLAT 487 (933)
T ss_pred HHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCCCcceeeeHHHHHHHHHHhChHHHHHHHHH
Confidence 5566666677777777743 3444566777888888777777776665522111 13344444444555554444433
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=93.70 E-value=2 Score=38.07 Aligned_cols=86 Identities=9% Similarity=0.026 Sum_probs=46.3
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCC
Q 036237 390 VGLGMHGMATQALDLFNKMCRMGMKPT-AITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGY 468 (689)
Q Consensus 390 ~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~ 468 (689)
--+-+.|++++|..+|+-+... .|. ..-+..|..+|-..+.+++|...|.....- . .-|+..+--+...|...|+
T Consensus 45 y~~y~~Gk~~eA~~~F~~L~~~--d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l-~-~~dp~p~f~agqC~l~l~~ 120 (165)
T PRK15331 45 YEFYNQGRLDEAETFFRFLCIY--DFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTL-L-KNDYRPVFFTGQCQLLMRK 120 (165)
T ss_pred HHHHHCCCHHHHHHHHHHHHHh--CcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-c-cCCCCccchHHHHHHHhCC
Confidence 3345567777777777666553 222 223344445555566677777766655421 1 1122223335566666666
Q ss_pred HHHHHHHHHhC
Q 036237 469 LEEAKSTIESM 479 (689)
Q Consensus 469 ~~~A~~~~~~~ 479 (689)
.++|...|...
T Consensus 121 ~~~A~~~f~~a 131 (165)
T PRK15331 121 AAKARQCFELV 131 (165)
T ss_pred HHHHHHHHHHH
Confidence 66666666654
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=93.65 E-value=4.9 Score=41.91 Aligned_cols=157 Identities=8% Similarity=0.075 Sum_probs=102.9
Q ss_pred hhH--HHHHHHHHHc-----CCHHHHHHHHHHHHH-CCCCCCHH-HHHHHHHHHh---------ccCcHHHHHHHHHHhH
Q 036237 383 GHW--TAMIVGLGMH-----GMATQALDLFNKMCR-MGMKPTAI-TFIGVLNACS---------HAGLVNDGRRYFNMMI 444 (689)
Q Consensus 383 ~~~--~~li~~~~~~-----g~~~~A~~l~~~m~~-~g~~p~~~-t~~~ll~a~~---------~~g~~~~a~~~~~~~~ 444 (689)
..| ...+.|.... ...+.|+.+|.+... ..+.|+.. .|..+..++. ......+|.+.-+...
T Consensus 252 ~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAv 331 (458)
T PRK11906 252 NHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVS 331 (458)
T ss_pred cchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence 456 5555554442 134578888998872 23677644 3333322221 1334556677776666
Q ss_pred HhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchh
Q 036237 445 NDYGIEP-TIEHYGCLVDILCRTGYLEEAKSTIESM-PMRPNF-VIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGC 521 (689)
Q Consensus 445 ~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 521 (689)
.+.| |......+..++.-.|+++.|...|++. ...||. .+|......+.-.|+.++|...++++++++|....+
T Consensus 332 ---eld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~ 408 (458)
T PRK11906 332 ---DITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKA 408 (458)
T ss_pred ---hcCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHH
Confidence 3444 4666777778788888899999999997 356764 477777777888999999999999999999976443
Q ss_pred HH--HHHHHHHhcCCcchHHHHHH
Q 036237 522 YV--VLSNIYAAAGQWDKVSEVRE 543 (689)
Q Consensus 522 ~~--~L~~~~~~~g~~~~A~~~~~ 543 (689)
-. ..++.|...+ .++|..++-
T Consensus 409 ~~~~~~~~~~~~~~-~~~~~~~~~ 431 (458)
T PRK11906 409 VVIKECVDMYVPNP-LKNNIKLYY 431 (458)
T ss_pred HHHHHHHHHHcCCc-hhhhHHHHh
Confidence 33 3344566554 566666653
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.57 E-value=5.5 Score=38.04 Aligned_cols=171 Identities=15% Similarity=0.174 Sum_probs=80.2
Q ss_pred HHhcCCHHHHHHHHHhcCCC------ChHHHHHHHHHHHHcCChHHHHHHHHHhccCCCCcChhhHHHHHHHHHccc---
Q 036237 260 YMKAGDVDSACELFDDMEIR------DLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLA--- 330 (689)
Q Consensus 260 ~~~~g~~~~A~~~~~~~~~~------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~--- 330 (689)
-.+.|++++|.+.|+.+..+ ...+--.++-++-+.+++++|+..+++....-..-...-|..-|.+.+..-
T Consensus 44 ~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs~~~~i~ 123 (254)
T COG4105 44 ELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLSYFFQID 123 (254)
T ss_pred HHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhccCC
Confidence 34567777777777776643 223344556667777888888777777765433323333444444433211
Q ss_pred ----chhhHHHHHHHHHHhCCccchhHHhHHHhhHHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHH
Q 036237 331 ----VLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFN 406 (689)
Q Consensus 331 ----~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~ 406 (689)
+...+.+.+..+.+ +++-|-.+.=..+|......+...=...=-.+..-|.+.|.+..|..-++
T Consensus 124 ~~~rDq~~~~~A~~~f~~------------~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~nR~~ 191 (254)
T COG4105 124 DVTRDQSAARAAFAAFKE------------LVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAINRFE 191 (254)
T ss_pred ccccCHHHHHHHHHHHHH------------HHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHH
Confidence 11111111111111 11111111111111111111100000001123455777777777777777
Q ss_pred HHHHCCCCCC-H---HHHHHHHHHHhccCcHHHHHHHHHHhH
Q 036237 407 KMCRMGMKPT-A---ITFIGVLNACSHAGLVNDGRRYFNMMI 444 (689)
Q Consensus 407 ~m~~~g~~p~-~---~t~~~ll~a~~~~g~~~~a~~~~~~~~ 444 (689)
+|.+. -|+ . ..+-.+..+|...|..++|.+.-+-+.
T Consensus 192 ~v~e~--y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~ 231 (254)
T COG4105 192 EVLEN--YPDTSAVREALARLEEAYYALGLTDEAKKTAKVLG 231 (254)
T ss_pred HHHhc--cccccchHHHHHHHHHHHHHhCChHHHHHHHHHHH
Confidence 77764 222 1 234455566777777777766655554
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=93.29 E-value=0.42 Score=45.51 Aligned_cols=114 Identities=10% Similarity=-0.045 Sum_probs=85.3
Q ss_pred HHHHHHHHhcccC-CCChhhHHHHHHHHHh-----CCCchHHHHHHHHhHhCCCCCCcccHHHHHHHHHhcC--------
Q 036237 71 LHYARSIFDRILQ-HPSLVLYNLLIKCYVF-----NQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLG-------- 136 (689)
Q Consensus 71 ~~~A~~~f~~~~~-~~~~~~~~~ll~~~~~-----~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~-------- 136 (689)
+-..+..|...+. ++|-.+|-+.+..+.. .+..+-....++.|.+-|+.-|..+|+.||..+-+-.
T Consensus 50 Lv~~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ 129 (406)
T KOG3941|consen 50 LVHVEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQ 129 (406)
T ss_pred ccchhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHH
Confidence 3344556666653 6777788888877754 3566667777889999999999999999998765421
Q ss_pred --------ChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCh-HHHHHHHhhCC
Q 036237 137 --------AIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEI-DLGRRVFDAMD 184 (689)
Q Consensus 137 --------~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~-~~A~~~~~~m~ 184 (689)
+-+-+..++++|...|+.||..+-..|++++++.|-. .+..++.-.|+
T Consensus 130 ~~F~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWmP 186 (406)
T KOG3941|consen 130 KVFLHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWMP 186 (406)
T ss_pred HHHhhCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccccHHHHHHHHHhhh
Confidence 2345788999999999999999999999999887753 44555555555
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=93.24 E-value=9.5 Score=37.81 Aligned_cols=96 Identities=11% Similarity=0.041 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHhccC--------CCCcCh-----hhHHHHHHHHHcccchh---hHHHHHHHHHHhC
Q 036237 283 TWNSMIAGYELNGRFMEALELLETMLIG--------DVLPND-----ATLVSALSAVAGLAVLN---KGRWMHSYIVKNG 346 (689)
Q Consensus 283 ~~~~li~~~~~~g~~~~A~~~~~~m~~~--------g~~p~~-----~t~~~ll~a~~~~~~~~---~a~~i~~~~~~~g 346 (689)
.||.-...+.+..++++|..++++..+- ...|+. .++..+..++...+..+ ++..+.+.+...
T Consensus 38 ~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e- 116 (278)
T PF08631_consen 38 CYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRLSILRLLANAYLEWDTYESVEKALNALRLLESE- 116 (278)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHh-
Confidence 3454444444333777776666654331 112222 12334444444444333 233333333222
Q ss_pred CccchhHHhHHHhhHHhcCCHHHHHHHHHhcCC
Q 036237 347 FVVDGVLGTLLIQMYSKCGSIESALTVFRAISK 379 (689)
Q Consensus 347 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 379 (689)
.+..+.++-.-++...+.++.+.+.+++.+|..
T Consensus 117 ~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~ 149 (278)
T PF08631_consen 117 YGNKPEVFLLKLEILLKSFDEEEYEEILMRMIR 149 (278)
T ss_pred CCCCcHHHHHHHHHHhccCChhHHHHHHHHHHH
Confidence 222233333344444555666666666665543
|
It is also involved in sporulation []. |
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=93.20 E-value=3.6 Score=44.20 Aligned_cols=115 Identities=13% Similarity=0.073 Sum_probs=72.1
Q ss_pred cCcHHHHHHHHHHhHHhcCCCCChhHHH-HHHHHHHhcCCHHHHHHHHHhCCC------CCCHHHHHHHHHHHHhcCChH
Q 036237 430 AGLVNDGRRYFNMMINDYGIEPTIEHYG-CLVDILCRTGYLEEAKSTIESMPM------RPNFVIWMSLLSGARNHGNKD 502 (689)
Q Consensus 430 ~g~~~~a~~~~~~~~~~~~~~p~~~~~~-~li~~~~~~g~~~~A~~~~~~~~~------~p~~~~~~~ll~~~~~~g~~~ 502 (689)
....+.|.++++.+... -|+...|. --...+...|++++|.+.|++.-. +.....+--+...+....+++
T Consensus 246 ~~~~~~a~~lL~~~~~~---yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~ 322 (468)
T PF10300_consen 246 DVPLEEAEELLEEMLKR---YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWE 322 (468)
T ss_pred CCCHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHH
Confidence 34566677777776632 35543333 233556667777777777775421 112334455666677788899
Q ss_pred HHHHHHHHHhhcCCCCchhHH-HHHHHHHhcCCc-------chHHHHHHHHHh
Q 036237 503 IGEYAANNLIKVAPDTIGCYV-VLSNIYAAAGQW-------DKVSEVREMMKK 547 (689)
Q Consensus 503 ~a~~~~~~~~~~~p~~~~~~~-~L~~~~~~~g~~-------~~A~~~~~~m~~ 547 (689)
+|...+.++.+.+.-....|. ..+-+|...|+. ++|.+++++...
T Consensus 323 ~A~~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 323 EAAEYFLRLLKESKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 999888888886654444443 455556778888 788888877653
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=93.10 E-value=17 Score=42.27 Aligned_cols=122 Identities=13% Similarity=0.081 Sum_probs=51.6
Q ss_pred CCHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH----HHhccCcHHHHHHHH
Q 036237 365 GSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLN----ACSHAGLVNDGRRYF 440 (689)
Q Consensus 365 g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~----a~~~~g~~~~a~~~~ 440 (689)
+++++|+.-+.++. ...|.-.+..--++|.+.+|+.++ +|+...+..+.. -|...+.+++|--.|
T Consensus 894 ~ry~~AL~hLs~~~---~~~~~e~~n~I~kh~Ly~~aL~ly--------~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Y 962 (1265)
T KOG1920|consen 894 KRYEDALSHLSECG---ETYFPECKNYIKKHGLYDEALALY--------KPDSEKQKVIYEAYADHLREELMSDEAALMY 962 (1265)
T ss_pred HHHHHHHHHHHHcC---ccccHHHHHHHHhcccchhhhhee--------ccCHHHHHHHHHHHHHHHHHhccccHHHHHH
Confidence 45555555555444 122333333334455555555443 344443333332 233344444444444
Q ss_pred HHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHH--HHHHHHHHHhcCChHHHHHH
Q 036237 441 NMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVI--WMSLLSGARNHGNKDIGEYA 507 (689)
Q Consensus 441 ~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~--~~~ll~~~~~~g~~~~a~~~ 507 (689)
+..-+ ..--+.+|..+|+|.+|+.+..++....|... -..|.+-+...++.-+|-++
T Consensus 963 e~~Gk----------lekAl~a~~~~~dWr~~l~~a~ql~~~~de~~~~a~~L~s~L~e~~kh~eAa~i 1021 (1265)
T KOG1920|consen 963 ERCGK----------LEKALKAYKECGDWREALSLAAQLSEGKDELVILAEELVSRLVEQRKHYEAAKI 1021 (1265)
T ss_pred HHhcc----------HHHHHHHHHHhccHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHcccchhHHHH
Confidence 33321 11123445555555555555555532222222 13444444444444444333
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=93.07 E-value=1.3 Score=46.82 Aligned_cols=132 Identities=15% Similarity=0.198 Sum_probs=85.2
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCC
Q 036237 391 GLGMHGMATQALDLFNKMCRMGMKP--TAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGY 468 (689)
Q Consensus 391 ~~~~~g~~~~A~~l~~~m~~~g~~p--~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~ 468 (689)
.....|+++++.++.+.-. +-| +..-...++.-+.+.|..+.|+++-..-.. --++..++|+
T Consensus 270 ~av~~~d~~~v~~~i~~~~---ll~~i~~~~~~~i~~fL~~~G~~e~AL~~~~D~~~-------------rFeLAl~lg~ 333 (443)
T PF04053_consen 270 TAVLRGDFEEVLRMIAASN---LLPNIPKDQGQSIARFLEKKGYPELALQFVTDPDH-------------RFELALQLGN 333 (443)
T ss_dssp HHHHTT-HHH-----HHHH---TGGG--HHHHHHHHHHHHHTT-HHHHHHHSS-HHH-------------HHHHHHHCT-
T ss_pred HHHHcCChhhhhhhhhhhh---hcccCChhHHHHHHHHHHHCCCHHHHHhhcCChHH-------------HhHHHHhcCC
Confidence 3455778888777665211 111 133466777777888888888876433221 2456678999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCcchHHHHHHHHHhC
Q 036237 469 LEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKR 548 (689)
Q Consensus 469 ~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~~~~~g~~~~A~~~~~~m~~~ 548 (689)
++.|.++.++.. +...|..|......+|+++.|+..+++.- -+..|+-.|.-.|+.+.-.++.+....+
T Consensus 334 L~~A~~~a~~~~---~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~--------d~~~L~lLy~~~g~~~~L~kl~~~a~~~ 402 (443)
T PF04053_consen 334 LDIALEIAKELD---DPEKWKQLGDEALRQGNIELAEECYQKAK--------DFSGLLLLYSSTGDREKLSKLAKIAEER 402 (443)
T ss_dssp HHHHHHHCCCCS---THHHHHHHHHHHHHTTBHHHHHHHHHHCT---------HHHHHHHHHHCT-HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhcC---cHHHHHHHHHHHHHcCCHHHHHHHHHhhc--------CccccHHHHHHhCCHHHHHHHHHHHHHc
Confidence 999988887764 77899999999999999999999888653 4567777888888877777766666655
Q ss_pred C
Q 036237 549 G 549 (689)
Q Consensus 549 ~ 549 (689)
|
T Consensus 403 ~ 403 (443)
T PF04053_consen 403 G 403 (443)
T ss_dssp T
T ss_pred c
Confidence 4
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.07 E-value=2.7 Score=41.28 Aligned_cols=156 Identities=11% Similarity=0.036 Sum_probs=83.7
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHH----HHHHHhcCCHH
Q 036237 395 HGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCL----VDILCRTGYLE 470 (689)
Q Consensus 395 ~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l----i~~~~~~g~~~ 470 (689)
+|+..+|-..++++.+. .+.|...+...=.+|...|+.+.-...++++.. ...|+...|..+ .-++..+|-++
T Consensus 116 ~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip--~wn~dlp~~sYv~GmyaFgL~E~g~y~ 192 (491)
T KOG2610|consen 116 RGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIP--KWNADLPCYSYVHGMYAFGLEECGIYD 192 (491)
T ss_pred cccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhcc--ccCCCCcHHHHHHHHHHhhHHHhccch
Confidence 45566666666666653 344445555555666666666666666666653 334454333332 23344667777
Q ss_pred HHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCC----CchhHHHHHHHHHhcCCcchHHHHHHH
Q 036237 471 EAKSTIESM-PMR-PNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPD----TIGCYVVLSNIYAAAGQWDKVSEVREM 544 (689)
Q Consensus 471 ~A~~~~~~~-~~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~----~~~~~~~L~~~~~~~g~~~~A~~~~~~ 544 (689)
+|++.-++. .+. .|...-.++...+...|+..++.++..+--..-.. -...|...+-.+...+.++.|.++++.
T Consensus 193 dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD~ 272 (491)
T KOG2610|consen 193 DAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYDR 272 (491)
T ss_pred hHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHHH
Confidence 777766664 222 24445555555566666666666665543321110 112344555556666777777777665
Q ss_pred HHhCCCccC
Q 036237 545 MKKRGFRKD 553 (689)
Q Consensus 545 m~~~~~~~~ 553 (689)
=.-+.+.++
T Consensus 273 ei~k~l~k~ 281 (491)
T KOG2610|consen 273 EIWKRLEKD 281 (491)
T ss_pred HHHHHhhcc
Confidence 433333333
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=92.87 E-value=0.89 Score=38.06 Aligned_cols=86 Identities=15% Similarity=0.079 Sum_probs=36.9
Q ss_pred hccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC----CCC--CCHHHHHHHHHHHHhcCCh
Q 036237 428 SHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESM----PMR--PNFVIWMSLLSGARNHGNK 501 (689)
Q Consensus 428 ~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~----~~~--p~~~~~~~ll~~~~~~g~~ 501 (689)
+..|+++.|++.|..... -.+.....||.-..+|--.|+.++|++-+++. +-+ .--..|..-...|+..|+.
T Consensus 54 aE~g~Ld~AlE~F~qal~--l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~d 131 (175)
T KOG4555|consen 54 AEAGDLDGALELFGQALC--LAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGND 131 (175)
T ss_pred HhccchHHHHHHHHHHHH--hcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCch
Confidence 344444444444444441 11122344444444444444444444444432 100 0011222333345556666
Q ss_pred HHHHHHHHHHhhcC
Q 036237 502 DIGEYAANNLIKVA 515 (689)
Q Consensus 502 ~~a~~~~~~~~~~~ 515 (689)
+.|..-|+.+-++.
T Consensus 132 d~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 132 DAARADFEAAAQLG 145 (175)
T ss_pred HHHHHhHHHHHHhC
Confidence 66666665554443
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=92.72 E-value=3 Score=35.99 Aligned_cols=117 Identities=10% Similarity=0.005 Sum_probs=58.0
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHH
Q 036237 387 AMIVGLGMHGMATQALDLFNKMCRMGMKP--TAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILC 464 (689)
Q Consensus 387 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p--~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~ 464 (689)
.-.....+.|++++|.+.|+.+...=.-+ ....-..++.++.+.+++++|...+++.++-+--.|+ ..|...+.+++
T Consensus 15 ~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~-vdYa~Y~~gL~ 93 (142)
T PF13512_consen 15 QEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPN-VDYAYYMRGLS 93 (142)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCC-ccHHHHHHHHH
Confidence 33444555677777777777666531100 1234555666666777777777777766643222232 23333333333
Q ss_pred hcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCc
Q 036237 465 RTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTI 519 (689)
Q Consensus 465 ~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 519 (689)
.-...+..+.-+- ..+ +..+....|...|+.+++.-|++.
T Consensus 94 ~~~~~~~~~~~~~--~~d-------------rD~~~~~~A~~~f~~lv~~yP~S~ 133 (142)
T PF13512_consen 94 YYEQDEGSLQSFF--RSD-------------RDPTPARQAFRDFEQLVRRYPNSE 133 (142)
T ss_pred HHHHhhhHHhhhc--ccc-------------cCcHHHHHHHHHHHHHHHHCcCCh
Confidence 2222111111111 111 111235577788888888888753
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=92.60 E-value=2.4 Score=40.70 Aligned_cols=102 Identities=22% Similarity=0.229 Sum_probs=66.5
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHhHHhcCCC-CChhHHHHHHHHHHhcCCHHHHHHHHHhC----CCCC-CHHHHHHHH
Q 036237 419 TFIGVLNACSHAGLVNDGRRYFNMMINDYGIE-PTIEHYGCLVDILCRTGYLEEAKSTIESM----PMRP-NFVIWMSLL 492 (689)
Q Consensus 419 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~-p~~~~~~~li~~~~~~g~~~~A~~~~~~~----~~~p-~~~~~~~ll 492 (689)
.|+.-+..+ ..|++..|...|...++.|.-. -....+-.|...+...|++++|..+|..+ |..| -+..+--|.
T Consensus 144 ~Y~~A~~~~-ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALDLY-KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 455554433 4566777777777777543111 11345556778888888888887777665 2222 234556666
Q ss_pred HHHHhcCChHHHHHHHHHHhhcCCCCchh
Q 036237 493 SGARNHGNKDIGEYAANNLIKVAPDTIGC 521 (689)
Q Consensus 493 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 521 (689)
......|+.++|...++++++..|+.+.+
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k~YP~t~aA 251 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIKRYPGTDAA 251 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHHHCCCCHHH
Confidence 77778888888888888888888876543
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=92.17 E-value=2.9 Score=43.67 Aligned_cols=145 Identities=11% Similarity=0.031 Sum_probs=84.5
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHH--HhcCCHH
Q 036237 393 GMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDIL--CRTGYLE 470 (689)
Q Consensus 393 ~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~--~~~g~~~ 470 (689)
-+..++..-+++-++..+ +.||..+.-.++ +-.....+.++.++|++..+. | ... +.... ...|.
T Consensus 179 WRERnp~aRIkaA~eALe--i~pdCAdAYILL-AEEeA~Ti~Eae~l~rqAvkA-g----E~~---lg~s~~~~~~g~-- 245 (539)
T PF04184_consen 179 WRERNPQARIKAAKEALE--INPDCADAYILL-AEEEASTIVEAEELLRQAVKA-G----EAS---LGKSQFLQHHGH-- 245 (539)
T ss_pred HhcCCHHHHHHHHHHHHH--hhhhhhHHHhhc-ccccccCHHHHHHHHHHHHHH-H----HHh---hchhhhhhcccc--
Confidence 344556666666666665 567765443333 333455678888888877642 1 000 00000 00111
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCC--CchhHHHHHHHHHhcCCcchHHHHHHHHHhC
Q 036237 471 EAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPD--TIGCYVVLSNIYAAAGQWDKVSEVREMMKKR 548 (689)
Q Consensus 471 ~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~--~~~~~~~L~~~~~~~g~~~~A~~~~~~m~~~ 548 (689)
..+.+..-...|-..+=..|..++.+.|+.++|++.++.+++..|. +......|++.+...+++.++..++.+-.+.
T Consensus 246 -~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi 324 (539)
T PF04184_consen 246 -FWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDI 324 (539)
T ss_pred -hhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccc
Confidence 1111111111122333355777778889999999999999887664 4557788899999999999999888876544
Q ss_pred CCc
Q 036237 549 GFR 551 (689)
Q Consensus 549 ~~~ 551 (689)
...
T Consensus 325 ~lp 327 (539)
T PF04184_consen 325 SLP 327 (539)
T ss_pred cCC
Confidence 333
|
The molecular function of this protein is uncertain. |
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.06 E-value=0.46 Score=42.91 Aligned_cols=88 Identities=13% Similarity=0.146 Sum_probs=67.3
Q ss_pred HHHhcCCHHHHHHHHHhC----CC---CCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCC
Q 036237 462 ILCRTGYLEEAKSTIESM----PM---RPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQ 534 (689)
Q Consensus 462 ~~~~~g~~~~A~~~~~~~----~~---~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~~~~~g~ 534 (689)
-+.+.|.+++|..-+..+ +. +-..+.|..-..+..+.+..+.|+....++++++|....++..-+.+|.+..+
T Consensus 104 ~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ek 183 (271)
T KOG4234|consen 104 ELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKMEK 183 (271)
T ss_pred HhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhhh
Confidence 345566666666655543 11 11244566667778899999999999999999999888888888999999999
Q ss_pred cchHHHHHHHHHhCC
Q 036237 535 WDKVSEVREMMKKRG 549 (689)
Q Consensus 535 ~~~A~~~~~~m~~~~ 549 (689)
+++|.+-++++.+..
T Consensus 184 ~eealeDyKki~E~d 198 (271)
T KOG4234|consen 184 YEEALEDYKKILESD 198 (271)
T ss_pred HHHHHHHHHHHHHhC
Confidence 999999999988743
|
|
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=91.72 E-value=5.2 Score=35.80 Aligned_cols=123 Identities=11% Similarity=0.046 Sum_probs=70.6
Q ss_pred HHHHHhHhCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhH-HHHHHHHHHhcCChHHHHHHHhhCCCC
Q 036237 108 TLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFV-LSSLVSMYAKFGEIDLGRRVFDAMDDK 186 (689)
Q Consensus 108 ~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~-~~~li~~~~~~g~~~~A~~~~~~m~~~ 186 (689)
+..+.+.+.+++|+...+..++..+.+.|...... +++..++-+|... ...|++.- +....+.++=-.|..+
T Consensus 15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~----qllq~~Vi~DSk~lA~~LLs~~---~~~~~~~Ql~lDMLkR 87 (167)
T PF07035_consen 15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLH----QLLQYHVIPDSKPLACQLLSLG---NQYPPAYQLGLDMLKR 87 (167)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHH----HHHhhcccCCcHHHHHHHHHhH---ccChHHHHHHHHHHHH
Confidence 44555566777788788888888888877755433 3444454444433 33333222 1223333333333322
Q ss_pred CeehHHHHHHHHHhCCChHHHHHHHhhCCCCCcchHHHHHHHHHhCCChHH
Q 036237 187 DLVSWNCLIDGYVKKGEVEVAMKLFDEMPDRDLFSWTCLVDGFSKCGKVEI 237 (689)
Q Consensus 187 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~d~~~~~~li~~~~~~g~~~~ 237 (689)
=...+..++..+...|++-+|+++.+....-+......++.+..+.++...
T Consensus 88 L~~~~~~iievLL~~g~vl~ALr~ar~~~~~~~~~~~~fLeAA~~~~D~~l 138 (167)
T PF07035_consen 88 LGTAYEEIIEVLLSKGQVLEALRYARQYHKVDSVPARKFLEAAANSNDDQL 138 (167)
T ss_pred hhhhHHHHHHHHHhCCCHHHHHHHHHHcCCcccCCHHHHHHHHHHcCCHHH
Confidence 223456677778888888888888877655555555566666666665543
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=91.60 E-value=2.8 Score=44.99 Aligned_cols=158 Identities=16% Similarity=0.157 Sum_probs=79.9
Q ss_pred hHHHHHHHHHhCCChHHHHHHHhhcCcCC----------cchHHHHHHHHHh----cCCHHHHHHHHHhcCC--CChHHH
Q 036237 221 SWTCLVDGFSKCGKVEIAREIFYRMPNRN----------LVSWNAMINGYMK----AGDVDSACELFDDMEI--RDLITW 284 (689)
Q Consensus 221 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~----------~~~~~~li~~~~~----~g~~~~A~~~~~~~~~--~~~~~~ 284 (689)
.+..++....-.|+-+.+++.+.+..+.+ ...|...+..++. ....+.|.++++.+.. |+...|
T Consensus 190 ~~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~yP~s~lf 269 (468)
T PF10300_consen 190 KVLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRYPNSALF 269 (468)
T ss_pred HHHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhCCCcHHH
Confidence 34455555666677777777766655422 1222333322222 3345566666666654 444444
Q ss_pred HHHH-HHHHHcCChHHHHHHHHHhccCCCCcChhhHHHHHHHHHcccchhhHHHHHHHHHHhCCccchhHHhHHHhhHHh
Q 036237 285 NSMI-AGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSK 363 (689)
Q Consensus 285 ~~li-~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~ 363 (689)
...- ..+...|+.++|++.|++..... .. +. +.....+--+.-.+.-
T Consensus 270 l~~~gR~~~~~g~~~~Ai~~~~~a~~~q--~~---~~---------------------------Ql~~l~~~El~w~~~~ 317 (468)
T PF10300_consen 270 LFFEGRLERLKGNLEEAIESFERAIESQ--SE---WK---------------------------QLHHLCYFELAWCHMF 317 (468)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHhccch--hh---HH---------------------------hHHHHHHHHHHHHHHH
Confidence 3322 33445566666666666544211 00 00 0011222234445666
Q ss_pred cCCHHHHHHHHHhcCCCCh---hhHHH-HHHHHHHcCCH-------HHHHHHHHHHHH
Q 036237 364 CGSIESALTVFRAISKKKV---GHWTA-MIVGLGMHGMA-------TQALDLFNKMCR 410 (689)
Q Consensus 364 ~g~~~~A~~~~~~~~~~~~---~~~~~-li~~~~~~g~~-------~~A~~l~~~m~~ 410 (689)
.+++++|.+.|..+.+.+. ..|.- ...++...|+. ++|.++|.+...
T Consensus 318 ~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 318 QHDWEEAAEYFLRLLKESKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HchHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 6777888777777765321 22222 23345556766 778888877543
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=91.54 E-value=23 Score=39.68 Aligned_cols=138 Identities=11% Similarity=0.051 Sum_probs=87.4
Q ss_pred CCCHHHHHHHHhcccCCCChhhHHHHHHHHHhCCCchHHHHHHHHhHhCCCCCCcccHHHHHHHHHhcCChHHHHHHHHH
Q 036237 68 INNLHYARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGL 147 (689)
Q Consensus 68 ~g~~~~A~~~f~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~ 147 (689)
.|++++|...+-+.... .--..+|.-|.......+-...++.+.+.|.. +...-..|+.+|.+.++.+.-.+....
T Consensus 381 Kgdf~~A~~qYI~tI~~---le~s~Vi~kfLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~ 456 (933)
T KOG2114|consen 381 KGDFDEATDQYIETIGF---LEPSEVIKKFLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISK 456 (933)
T ss_pred cCCHHHHHHHHHHHccc---CChHHHHHHhcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhc
Confidence 59999999887654311 11124566677777777778888888888865 566667889999999998876665543
Q ss_pred HHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhhCCCCCeehHHHHHHHHHhCCChHHHHHHHhhCCC
Q 036237 148 VFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPD 216 (689)
Q Consensus 148 ~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 216 (689)
.- .|.. .+-....+..+.+.+-+++|..+-..... ....... .+-..+++++|++.+..++-
T Consensus 457 ~~-~g~~--~fd~e~al~Ilr~snyl~~a~~LA~k~~~-he~vl~i---lle~~~ny~eAl~yi~slp~ 518 (933)
T KOG2114|consen 457 CD-KGEW--FFDVETALEILRKSNYLDEAELLATKFKK-HEWVLDI---LLEDLHNYEEALRYISSLPI 518 (933)
T ss_pred CC-Ccce--eeeHHHHHHHHHHhChHHHHHHHHHHhcc-CHHHHHH---HHHHhcCHHHHHHHHhcCCH
Confidence 32 1211 11233455666666777777766554443 2222222 33455788899988888864
|
|
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.34 E-value=9.8 Score=35.23 Aligned_cols=179 Identities=13% Similarity=0.084 Sum_probs=99.0
Q ss_pred CCHHHHHHHHHhcCC--C-ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCcHHHHHHHH
Q 036237 365 GSIESALTVFRAISK--K-KVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPT-AITFIGVLNACSHAGLVNDGRRYF 440 (689)
Q Consensus 365 g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~ 440 (689)
|-+.-|+-=|.+... | -+..||-+.--+...|+++.|.+.|+...+. .|. ..++..-.-++--.|++.-|.+-|
T Consensus 79 GL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~EL--Dp~y~Ya~lNRgi~~YY~gR~~LAq~d~ 156 (297)
T COG4785 79 GLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLEL--DPTYNYAHLNRGIALYYGGRYKLAQDDL 156 (297)
T ss_pred hHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhcc--CCcchHHHhccceeeeecCchHhhHHHH
Confidence 444444444444332 3 3457888888888888888888888888773 443 223222222344567777777655
Q ss_pred HHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCC--
Q 036237 441 NMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDT-- 518 (689)
Q Consensus 441 ~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~-- 518 (689)
...-. -.|+...-...+-.-.+.-+..+|..-+.+--.+.|..-|...+-.+.--.-.+ +.+++++.+-..++
T Consensus 157 ~~fYQ---~D~~DPfR~LWLYl~E~k~dP~~A~tnL~qR~~~~d~e~WG~~iV~~yLgkiS~--e~l~~~~~a~a~~n~~ 231 (297)
T COG4785 157 LAFYQ---DDPNDPFRSLWLYLNEQKLDPKQAKTNLKQRAEKSDKEQWGWNIVEFYLGKISE--ETLMERLKADATDNTS 231 (297)
T ss_pred HHHHh---cCCCChHHHHHHHHHHhhCCHHHHHHHHHHHHHhccHhhhhHHHHHHHHhhccH--HHHHHHHHhhccchHH
Confidence 44432 233322211112222244456666654443222345566665555443221111 12233333322222
Q ss_pred -----chhHHHHHHHHHhcCCcchHHHHHHHHHhCCC
Q 036237 519 -----IGCYVVLSNIYAAAGQWDKVSEVREMMKKRGF 550 (689)
Q Consensus 519 -----~~~~~~L~~~~~~~g~~~~A~~~~~~m~~~~~ 550 (689)
.++|.-|+.-|...|..++|..+|+-....++
T Consensus 232 ~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaiannV 268 (297)
T COG4785 232 LAEHLTETYFYLGKYYLSLGDLDEATALFKLAVANNV 268 (297)
T ss_pred HHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhH
Confidence 35889999999999999999999998776543
|
|
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=91.20 E-value=24 Score=37.91 Aligned_cols=137 Identities=8% Similarity=0.033 Sum_probs=82.0
Q ss_pred hHHHHHhhcccccCCCCHHHHHHHHhcccC-CCChhh-HHHHHHHHHhCCCchHHHHHHHHhHhCCCCCCcccHHHHHHH
Q 036237 54 GISSRLLSLYVDPHINNLHYARSIFDRILQ-HPSLVL-YNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKG 131 (689)
Q Consensus 54 ~~~~~ll~~~~~~~~g~~~~A~~~f~~~~~-~~~~~~-~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~ 131 (689)
..++.||.---. ...++.++.+++.+.. -|...- |-....-=.+.|..+.+.++|++-.+ |++-+...|...+..
T Consensus 46 ~~wt~li~~~~~--~~~~~~~r~~y~~fL~kyPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~-aip~SvdlW~~Y~~f 122 (577)
T KOG1258|consen 46 DAWTTLIQENDS--IEDVDALREVYDIFLSKYPLCYGYWKKFADYEYKLGNAENSVKVFERGVQ-AIPLSVDLWLSYLAF 122 (577)
T ss_pred cchHHHHhccCc--hhHHHHHHHHHHHHHhhCccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-hhhhHHHHHHHHHHH
Confidence 345555543333 4455666677766652 455542 34444444567788888888887775 344455555555554
Q ss_pred HH-hcCChHHHHHHHHHHHHh-CCC-CchhHHHHHHHHHHhcCChHHHHHHHhhCCCCCeehHHH
Q 036237 132 AA-RLGAIKEGKQIHGLVFKL-GFG-FDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNC 193 (689)
Q Consensus 132 ~~-~~~~~~~a~~~~~~~~~~-g~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~ 193 (689)
+. ..|+.+..+..|+.++.. |.. .....|...|..-..++++.....+++++.+-....++.
T Consensus 123 ~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRileiP~~~~~~ 187 (577)
T KOG1258|consen 123 LKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEIPLHQLNR 187 (577)
T ss_pred HhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhhhhhHhHH
Confidence 43 456777777788777765 321 233466677776677788888888888776543333333
|
|
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=91.16 E-value=17 Score=36.02 Aligned_cols=216 Identities=13% Similarity=-0.003 Sum_probs=95.5
Q ss_pred CCChhhHHHHHHHHHhCCCchHHHHHHHHhHhCCCCCCcccHHHHHHHHHhcCCh----HHHHHHHHHHHHhCCCCchhH
Q 036237 84 HPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAI----KEGKQIHGLVFKLGFGFDKFV 159 (689)
Q Consensus 84 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~----~~a~~~~~~~~~~g~~~~~~~ 159 (689)
.+|.......+.++...|. .++...+..+... +|...=...+.+++..|+. +++...+..+... +++..+
T Consensus 34 d~d~~vR~~A~~aL~~~~~-~~~~~~l~~ll~~---~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~V 107 (280)
T PRK09687 34 DHNSLKRISSIRVLQLRGG-QDVFRLAIELCSS---KNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSACV 107 (280)
T ss_pred CCCHHHHHHHHHHHHhcCc-chHHHHHHHHHhC---CCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHHH
Confidence 5555555555666655553 3333333334332 2333334444555555542 2333334333222 455555
Q ss_pred HHHHHHHHHhcCCh-----HHHHHHHhh-CCCCCeehHHHHHHHHHhCCChHHHHHHHhhC-CCCCcchHHHHHHHHHhC
Q 036237 160 LSSLVSMYAKFGEI-----DLGRRVFDA-MDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEM-PDRDLFSWTCLVDGFSKC 232 (689)
Q Consensus 160 ~~~li~~~~~~g~~-----~~A~~~~~~-m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~d~~~~~~li~~~~~~ 232 (689)
....+.+++..+.- ..+...+.. +..++..+--..+.++.+.|+. +|+..+-.+ ..+|...-...+.++.+.
T Consensus 108 R~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~~-~ai~~L~~~L~d~~~~VR~~A~~aLg~~ 186 (280)
T PRK09687 108 RASAINATGHRCKKNPLYSPKIVEQSQITAFDKSTNVRFAVAFALSVINDE-AAIPLLINLLKDPNGDVRNWAAFALNSN 186 (280)
T ss_pred HHHHHHHHhcccccccccchHHHHHHHHHhhCCCHHHHHHHHHHHhccCCH-HHHHHHHHHhcCCCHHHHHHHHHHHhcC
Confidence 55555555554321 122222222 2233444444455555555543 333333333 334444444444444443
Q ss_pred C-ChHHHHHHH-hhcCcCCcchHHHHHHHHHhcCCHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHhcc
Q 036237 233 G-KVEIAREIF-YRMPNRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLI 309 (689)
Q Consensus 233 g-~~~~A~~~~-~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 309 (689)
+ ....+...+ ..+..++..+....+.++++.|+.+-...+.+.+..++ ..-..+.++...|.. +|+..+.++..
T Consensus 187 ~~~~~~~~~~L~~~L~D~~~~VR~~A~~aLg~~~~~~av~~Li~~L~~~~--~~~~a~~ALg~ig~~-~a~p~L~~l~~ 262 (280)
T PRK09687 187 KYDNPDIREAFVAMLQDKNEEIRIEAIIGLALRKDKRVLSVLIKELKKGT--VGDLIIEAAGELGDK-TLLPVLDTLLY 262 (280)
T ss_pred CCCCHHHHHHHHHHhcCCChHHHHHHHHHHHccCChhHHHHHHHHHcCCc--hHHHHHHHHHhcCCH-hHHHHHHHHHh
Confidence 2 122333332 22333555566666666666666433333333333333 123445555566654 46666666554
|
|
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=90.64 E-value=0.45 Score=29.47 Aligned_cols=31 Identities=13% Similarity=0.128 Sum_probs=24.9
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHhhcCCC
Q 036237 487 IWMSLLSGARNHGNKDIGEYAANNLIKVAPD 517 (689)
Q Consensus 487 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 517 (689)
+|..+...+...|+++.|...++++++++|+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 5667777788888888888888888888874
|
... |
| >PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi | Back alignment and domain information |
|---|
Probab=90.20 E-value=36 Score=38.19 Aligned_cols=152 Identities=10% Similarity=0.030 Sum_probs=77.0
Q ss_pred cCCCchHHHHHHHHHHHhCCCCCc----h-HHHHHhhcccccCCCCHHHHHHHHhcccC---CCChhhHHHHH-----HH
Q 036237 30 FSSTHKETQQLHALSVKTNLIYHS----G-ISSRLLSLYVDPHINNLHYARSIFDRILQ---HPSLVLYNLLI-----KC 96 (689)
Q Consensus 30 ~c~~~~~~~~~~~~~~~~g~~~~~----~-~~~~ll~~~~~~~~g~~~~A~~~f~~~~~---~~~~~~~~~ll-----~~ 96 (689)
-..+++.|+......+..--.++. + ....|+..|.+ .+... |....++... ......|.... ..
T Consensus 72 eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~--~~~~~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l 148 (608)
T PF10345_consen 72 ETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFK--TNPKA-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQL 148 (608)
T ss_pred HcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHh--cCHHH-HHHHHHHHHHHHhccCchhHHHHHHHHHHHH
Confidence 334466666665544322211111 1 12234455555 44433 7777776542 11112232222 22
Q ss_pred HHhCCCchHHHHHHHHhHhCC---CCCCcccHHHHHHHHH--hcCChHHHHHHHHHHHHhCC---------CCchhHHHH
Q 036237 97 YVFNQRSHEALTLFCDLLDRF---LLPDNFTLPCVIKGAA--RLGAIKEGKQIHGLVFKLGF---------GFDKFVLSS 162 (689)
Q Consensus 97 ~~~~g~~~~a~~~~~~m~~~g---~~p~~~t~~~ll~~~~--~~~~~~~a~~~~~~~~~~g~---------~~~~~~~~~ 162 (689)
+...+++..|++.++.....- ..|-...+..++.+.. +.+..+.+.+....+..... .|-..++..
T Consensus 149 ~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~l 228 (608)
T PF10345_consen 149 ALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFL 228 (608)
T ss_pred HHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHH
Confidence 223378888999888876532 2334445555555554 34545666666665543221 234456666
Q ss_pred HHHHHH--hcCChHHHHHHHhhCC
Q 036237 163 LVSMYA--KFGEIDLGRRVFDAMD 184 (689)
Q Consensus 163 li~~~~--~~g~~~~A~~~~~~m~ 184 (689)
+++.++ ..|+++.+...+.++.
T Consensus 229 ll~l~~~l~~~~~~~~~~~L~~lq 252 (608)
T PF10345_consen 229 LLDLCCSLQQGDVKNSKQKLKQLQ 252 (608)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHH
Confidence 666544 5677667766665554
|
It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 []. |
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=90.14 E-value=11 Score=33.27 Aligned_cols=89 Identities=13% Similarity=0.079 Sum_probs=56.7
Q ss_pred HHHhccCcHHHHHHHHHHhHHhcCCCCCh-hHHHHHHHHHHhcCCHHHHHHHHHhCCCC-CCHHHHHHHHHHHHhcCChH
Q 036237 425 NACSHAGLVNDGRRYFNMMINDYGIEPTI-EHYGCLVDILCRTGYLEEAKSTIESMPMR-PNFVIWMSLLSGARNHGNKD 502 (689)
Q Consensus 425 ~a~~~~g~~~~a~~~~~~~~~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~-p~~~~~~~ll~~~~~~g~~~ 502 (689)
+.-...++.+++..+++.+. -+.|.. ..-..-...+.+.|+|.+|..+|+++.-. |....-.+|+..|.....-.
T Consensus 18 ~~al~~~~~~D~e~lL~ALr---vLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~D~ 94 (160)
T PF09613_consen 18 SVALRLGDPDDAEALLDALR---VLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALGDP 94 (160)
T ss_pred HHHHccCChHHHHHHHHHHH---HhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcCCh
Confidence 34456678888888888776 566763 33344456677888999999999887433 44444456666666554444
Q ss_pred HHHHHHHHHhhcCC
Q 036237 503 IGEYAANNLIKVAP 516 (689)
Q Consensus 503 ~a~~~~~~~~~~~p 516 (689)
.=....+++++..|
T Consensus 95 ~Wr~~A~evle~~~ 108 (160)
T PF09613_consen 95 SWRRYADEVLESGA 108 (160)
T ss_pred HHHHHHHHHHhcCC
Confidence 44445556666555
|
|
| >PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=89.91 E-value=0.6 Score=40.97 Aligned_cols=128 Identities=14% Similarity=0.122 Sum_probs=78.3
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhhCCCCCeehHHHHHHHHHhCCChHHH
Q 036237 128 VIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVA 207 (689)
Q Consensus 128 ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A 207 (689)
++..+.+.+.+.....+++.+.+.+...+....+.|+..|++.++.+...++++.... .-...++..+-+.|.+++|
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~---yd~~~~~~~c~~~~l~~~a 89 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN---YDLDKALRLCEKHGLYEEA 89 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS---S-CTHHHHHHHTTTSHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc---cCHHHHHHHHHhcchHHHH
Confidence 4556666777888888888888777667788889999999999888888888874333 3345667777777777777
Q ss_pred HHHHhhCCCCCcchHHHHHHHHHhCCChHHHHHHHhhcCcCCcchHHHHHHHHHhcCC
Q 036237 208 MKLFDEMPDRDLFSWTCLVDGFSKCGKVEIAREIFYRMPNRNLVSWNAMINGYMKAGD 265 (689)
Q Consensus 208 ~~~~~~m~~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~ 265 (689)
.-++.++...+... ..+...++++.|.+..... .++.+|..+++.+...+.
T Consensus 90 ~~Ly~~~~~~~~al-----~i~~~~~~~~~a~e~~~~~--~~~~l~~~l~~~~l~~~~ 140 (143)
T PF00637_consen 90 VYLYSKLGNHDEAL-----EILHKLKDYEEAIEYAKKV--DDPELWEQLLKYCLDSKP 140 (143)
T ss_dssp HHHHHCCTTHTTCS-----STSSSTHCSCCCTTTGGGC--SSSHHHHHHHHHHCTSTC
T ss_pred HHHHHHcccHHHHH-----HHHHHHccHHHHHHHHHhc--CcHHHHHHHHHHHHhcCc
Confidence 77777664421110 0122233344444332222 235566666666555443
|
These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L. |
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=89.85 E-value=0.52 Score=29.84 Aligned_cols=26 Identities=27% Similarity=0.359 Sum_probs=20.2
Q ss_pred hHHHHHHHHHhcCCcchHHHHHHHHH
Q 036237 521 CYVVLSNIYAAAGQWDKVSEVREMMK 546 (689)
Q Consensus 521 ~~~~L~~~~~~~g~~~~A~~~~~~m~ 546 (689)
++..|+++|.+.|+|++|.+++++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 46778888888888888888888744
|
|
| >KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=89.72 E-value=15 Score=35.11 Aligned_cols=210 Identities=16% Similarity=0.206 Sum_probs=110.8
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHhccC---CC--CcChhhHHHHHHHHHcccchhhHHHHHHHHHHh-----CCccchhH
Q 036237 284 WNSMIAGYELNGRFMEALELLETMLIG---DV--LPNDATLVSALSAVAGLAVLNKGRWMHSYIVKN-----GFVVDGVL 353 (689)
Q Consensus 284 ~~~li~~~~~~g~~~~A~~~~~~m~~~---g~--~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~-----g~~~~~~~ 353 (689)
.-.+|..+.+.|++++.++.|.+|+.- .+ .-+..+.++++.-.+...+.+.-..+++.-.+. +-..--.+
T Consensus 68 LKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKT 147 (440)
T KOG1464|consen 68 LKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKT 147 (440)
T ss_pred HHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeec
Confidence 344566666666666666666666421 11 123344555555555444444444444332221 11111123
Q ss_pred HhHHHhhHHhcCCHHHHHHHHHhcCC----C----C-------hhhHHHHHHHHHHcCCHHHHHHHHHHHHHCC-CCCCH
Q 036237 354 GTLLIQMYSKCGSIESALTVFRAISK----K----K-------VGHWTAMIVGLGMHGMATQALDLFNKMCRMG-MKPTA 417 (689)
Q Consensus 354 ~~~li~~~~~~g~~~~A~~~~~~~~~----~----~-------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~p~~ 417 (689)
-+-|...|...|.+..-.+++.++.. . | ...|..-|..|....+-.+-..++++..... .-|.+
T Consensus 148 NtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHP 227 (440)
T KOG1464|consen 148 NTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHP 227 (440)
T ss_pred cchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCch
Confidence 34466667777777777777776642 0 1 2367777888888888777777888765432 23444
Q ss_pred HHHHHHHHHHh-----ccCcHHHHHHHHHHhHHhcCC--CCCh---hHHHHHHHHHHhcCC----HHHHHHHHHhCCCCC
Q 036237 418 ITFIGVLNACS-----HAGLVNDGRRYFNMMINDYGI--EPTI---EHYGCLVDILCRTGY----LEEAKSTIESMPMRP 483 (689)
Q Consensus 418 ~t~~~ll~a~~-----~~g~~~~a~~~~~~~~~~~~~--~p~~---~~~~~li~~~~~~g~----~~~A~~~~~~~~~~p 483 (689)
.. ..+++-|. +.|.+++|..-|-+..+.+.- .|.. --|-.|..++.+.|- -+||. -.+..|
T Consensus 228 lI-mGvIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsGspRRttCLKYLVLANMLmkS~iNPFDsQEAK----PyKNdP 302 (440)
T KOG1464|consen 228 LI-MGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTCLKYLVLANMLMKSGINPFDSQEAK----PYKNDP 302 (440)
T ss_pred HH-HhHHHHcCCccccccchHHHHHhHHHHHHhcccccCCcchhHHHHHHHHHHHHHHcCCCCCcccccC----CCCCCH
Confidence 33 34455553 467787776555444433322 2221 235556666666652 11110 011335
Q ss_pred CHHHHHHHHHHHHhc
Q 036237 484 NFVIWMSLLSGARNH 498 (689)
Q Consensus 484 ~~~~~~~ll~~~~~~ 498 (689)
.......|+.+|..+
T Consensus 303 EIlAMTnlv~aYQ~N 317 (440)
T KOG1464|consen 303 EILAMTNLVAAYQNN 317 (440)
T ss_pred HHHHHHHHHHHHhcc
Confidence 566677788877654
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=89.47 E-value=3.6 Score=40.50 Aligned_cols=116 Identities=12% Similarity=0.105 Sum_probs=91.5
Q ss_pred ccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CC-CCCHHHHH----HHHHHHHhcCChH
Q 036237 429 HAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESM-PM-RPNFVIWM----SLLSGARNHGNKD 502 (689)
Q Consensus 429 ~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~----~ll~~~~~~g~~~ 502 (689)
-.|...+|-..++++.. ..+.|...++--=+++.-.|+.+.-...++++ +. .||...|. .+.-++...|-++
T Consensus 115 ~~g~~h~a~~~wdklL~--d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~ 192 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLD--DYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYD 192 (491)
T ss_pred ccccccHHHHHHHHHHH--hCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccch
Confidence 35777888888888886 45566777777778888999999888888886 32 45554332 3334456789999
Q ss_pred HHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCcchHHHHHHHHH
Q 036237 503 IGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMK 546 (689)
Q Consensus 503 ~a~~~~~~~~~~~p~~~~~~~~L~~~~~~~g~~~~A~~~~~~m~ 546 (689)
+|++..+++++++|.|..+...++.++...|+..++.+...+-.
T Consensus 193 dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~te 236 (491)
T KOG2610|consen 193 DAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTE 236 (491)
T ss_pred hHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcc
Confidence 99999999999999999999999999999999999998876543
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=88.97 E-value=0.71 Score=29.20 Aligned_cols=27 Identities=11% Similarity=-0.031 Sum_probs=20.2
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHhh
Q 036237 487 IWMSLLSGARNHGNKDIGEYAANNLIK 513 (689)
Q Consensus 487 ~~~~ll~~~~~~g~~~~a~~~~~~~~~ 513 (689)
+|..|...|...|+++.|+.++++++.
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~ 27 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALA 27 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 467778888888888888888888554
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=88.66 E-value=14 Score=34.92 Aligned_cols=22 Identities=18% Similarity=0.335 Sum_probs=11.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHh
Q 036237 254 NAMINGYMKAGDVDSACELFDD 275 (689)
Q Consensus 254 ~~li~~~~~~g~~~~A~~~~~~ 275 (689)
+--..+|..+|..+.|-..+++
T Consensus 95 eKAs~lY~E~GspdtAAmaleK 116 (308)
T KOG1585|consen 95 EKASELYVECGSPDTAAMALEK 116 (308)
T ss_pred HHHHHHHHHhCCcchHHHHHHH
Confidence 3345566666666555544443
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=88.26 E-value=3.1 Score=40.67 Aligned_cols=75 Identities=11% Similarity=0.178 Sum_probs=54.7
Q ss_pred hhHHhHHHhhHHhcCCHHHHHHHHHhcCCC---ChhhHHHHHHHHHHcCCHHHHHHHHHHHHH-----CCCCCCHHHHHH
Q 036237 351 GVLGTLLIQMYSKCGSIESALTVFRAISKK---KVGHWTAMIVGLGMHGMATQALDLFNKMCR-----MGMKPTAITFIG 422 (689)
Q Consensus 351 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~-----~g~~p~~~t~~~ 422 (689)
..++..++..+..+|+.+.+.+.++++... +...|..++.+|.+.|+...|+..|+++.. .|+.|...+...
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~ 232 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRAL 232 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHH
Confidence 345566788888888888888888877653 455788888888888888888888888765 466666555444
Q ss_pred HHH
Q 036237 423 VLN 425 (689)
Q Consensus 423 ll~ 425 (689)
...
T Consensus 233 y~~ 235 (280)
T COG3629 233 YEE 235 (280)
T ss_pred HHH
Confidence 333
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=88.25 E-value=2.3 Score=41.52 Aligned_cols=61 Identities=20% Similarity=0.202 Sum_probs=48.2
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCcchHHHHHHHHHh
Q 036237 487 IWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKK 547 (689)
Q Consensus 487 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~~~~~g~~~~A~~~~~~m~~ 547 (689)
++..++.++...|+.+.+...++++++.+|-+-..|..|+.+|.+.|+...|...++.+.+
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~ 215 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKK 215 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 4455666677777888888888888888888888888888888888888888888887764
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=88.14 E-value=1.6 Score=29.01 Aligned_cols=32 Identities=19% Similarity=0.357 Sum_probs=20.4
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH
Q 036237 384 HWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTA 417 (689)
Q Consensus 384 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~ 417 (689)
.|..+...|.+.|++++|+++|++..+ ..|+.
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~--~~P~~ 34 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALA--LDPDD 34 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH--HCcCC
Confidence 455666667777777777777777666 34543
|
|
| >KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=87.89 E-value=90 Score=39.74 Aligned_cols=308 Identities=13% Similarity=0.061 Sum_probs=162.3
Q ss_pred HHHHHHhCCChHHHHHHHhhc----CcCC--cchHHHHHHHHHhcCCHHHHHHHHHh-cCCCChHHHHHHHHHHHHcCCh
Q 036237 225 LVDGFSKCGKVEIAREIFYRM----PNRN--LVSWNAMINGYMKAGDVDSACELFDD-MEIRDLITWNSMIAGYELNGRF 297 (689)
Q Consensus 225 li~~~~~~g~~~~A~~~~~~~----~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~-~~~~~~~~~~~li~~~~~~g~~ 297 (689)
+..+-.+.+.+..|.-.++.- .+.+ ...|..+...|+.-+++|....+... ...++ ...-|.-....|++
T Consensus 1389 La~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a~~s---l~~qil~~e~~g~~ 1465 (2382)
T KOG0890|consen 1389 LARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFADPS---LYQQILEHEASGNW 1465 (2382)
T ss_pred HHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhcCcc---HHHHHHHHHhhccH
Confidence 334445566677777777662 2211 33444555578877777777666653 33322 22344556677888
Q ss_pred HHHHHHHHHhccCCCCcChhhHHHHHHHHHcccchhhHHHHHHHHHHhCCccchhHHhHHHhhHHhcCCHHHHHHHHHhc
Q 036237 298 MEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAI 377 (689)
Q Consensus 298 ~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 377 (689)
..|...|+++.+.+ ++...+++.++......+.+....-..+-.....-+.....++.=+.+--+.++++.......
T Consensus 1466 ~da~~Cye~~~q~~-p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~se~~~~~~s~~~eaaW~l~qwD~~e~~l~-- 1542 (2382)
T KOG0890|consen 1466 ADAAACYERLIQKD-PDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINRSEEVDELNSLGVEAAWRLSQWDLLESYLS-- 1542 (2382)
T ss_pred HHHHHHHHHhhcCC-CccccchhhHHHhhhcccchhHHHhhhcchhhccCHHHHHHHHHHHHHHhhhcchhhhhhhhh--
Confidence 88889998888754 223566777777666666666555433333222211112222333444466677776666555
Q ss_pred CCCChhhHHHH--HHHHHHcC--CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHH----------Hh
Q 036237 378 SKKKVGHWTAM--IVGLGMHG--MATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFN----------MM 443 (689)
Q Consensus 378 ~~~~~~~~~~l--i~~~~~~g--~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~----------~~ 443 (689)
.++...|.+. +..+.+.. +.-.-.+..+.+.+.-+.| +.+|+..|.+..+.++.- ..
T Consensus 1543 -~~n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~--------lsa~s~~~Sy~~~Y~~~~kLH~l~el~~~~ 1613 (2382)
T KOG0890|consen 1543 -DRNIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIEN--------LSACSIEGSYVRSYEILMKLHLLLELENSI 1613 (2382)
T ss_pred -cccccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhh--------HHHhhccchHHHHHHHHHHHHHHHHHHHHH
Confidence 4555566554 22222222 1111112333333221111 222222222222211111 11
Q ss_pred HHhcCCCCCh------hHHHHHHHHHHhcCCHHHHHHHHHhC----CCCC-----CHHHHHHHHHHHHhcCChHHHHHHH
Q 036237 444 INDYGIEPTI------EHYGCLVDILCRTGYLEEAKSTIESM----PMRP-----NFVIWMSLLSGARNHGNKDIGEYAA 508 (689)
Q Consensus 444 ~~~~~~~p~~------~~~~~li~~~~~~g~~~~A~~~~~~~----~~~p-----~~~~~~~ll~~~~~~g~~~~a~~~~ 508 (689)
....+..++. ..|..-+..-....+..+-.--+++. ..+| -..+|......++..|.++.|....
T Consensus 1614 ~~l~~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~nal 1693 (2382)
T KOG0890|consen 1614 EELKKVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQNAL 1693 (2382)
T ss_pred HHhhccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHHHHH
Confidence 1111333332 11222222111111222222122211 1122 2458999999999999999999998
Q ss_pred HHHhhcCCCCchhHHHHHHHHHhcCCcchHHHHHHHHHhCC
Q 036237 509 NNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRG 549 (689)
Q Consensus 509 ~~~~~~~p~~~~~~~~L~~~~~~~g~~~~A~~~~~~m~~~~ 549 (689)
-++.+..+ +..+...+......|+-..|..++++-.+..
T Consensus 1694 l~A~e~r~--~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~ 1732 (2382)
T KOG0890|consen 1694 LNAKESRL--PEIVLERAKLLWQTGDELNALSVLQEILSKN 1732 (2382)
T ss_pred Hhhhhccc--chHHHHHHHHHHhhccHHHHHHHHHHHHHhh
Confidence 88887664 4689999999999999999999999887544
|
|
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=87.83 E-value=0.97 Score=44.34 Aligned_cols=110 Identities=11% Similarity=0.086 Sum_probs=79.5
Q ss_pred HHHHHhccCcHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhCC-CC-CCHHHHHHHHHHHHhcC
Q 036237 423 VLNACSHAGLVNDGRRYFNMMINDYGIEP-TIEHYGCLVDILCRTGYLEEAKSTIESMP-MR-PNFVIWMSLLSGARNHG 499 (689)
Q Consensus 423 ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~-p~~~~~~~ll~~~~~~g 499 (689)
-.+-|.+.|.+++|+..|...+ .+.| +..++..-..+|.+..++..|+.-....- +. .=...|..-+.+-...|
T Consensus 103 ~GN~yFKQgKy~EAIDCYs~~i---a~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg 179 (536)
T KOG4648|consen 103 RGNTYFKQGKYEEAIDCYSTAI---AVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLG 179 (536)
T ss_pred hhhhhhhccchhHHHHHhhhhh---ccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHh
Confidence 3566888999999999998877 4567 78888888899999999988877665541 11 11224555566666678
Q ss_pred ChHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCcchHH
Q 036237 500 NKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVS 539 (689)
Q Consensus 500 ~~~~a~~~~~~~~~~~p~~~~~~~~L~~~~~~~g~~~~A~ 539 (689)
+.++|.+-++.+++++|++.. |-..|++.....++.
T Consensus 180 ~~~EAKkD~E~vL~LEP~~~E----LkK~~a~i~Sl~E~~ 215 (536)
T KOG4648|consen 180 NNMEAKKDCETVLALEPKNIE----LKKSLARINSLRERK 215 (536)
T ss_pred hHHHHHHhHHHHHhhCcccHH----HHHHHHHhcchHhhh
Confidence 999999999999999998643 444455444444443
|
|
| >KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=87.81 E-value=40 Score=35.57 Aligned_cols=102 Identities=9% Similarity=0.149 Sum_probs=70.0
Q ss_pred CCCCHHHHH-HHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHH---HHhcCCHHHHHHHHHhCC--CCCCHH
Q 036237 413 MKPTAITFI-GVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDI---LCRTGYLEEAKSTIESMP--MRPNFV 486 (689)
Q Consensus 413 ~~p~~~t~~-~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~---~~~~g~~~~A~~~~~~~~--~~p~~~ 486 (689)
..|+..|+. .++.-+-..|-..+|+..|..+.. -.+|+...|.-+|+. ...+| +.-+.++++.|- .-.|+.
T Consensus 455 ~~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~--lpp~sl~l~r~miq~e~~~~sc~-l~~~r~~yd~a~~~fg~d~~ 531 (568)
T KOG2396|consen 455 IGADSVTLKSKYLDWAYESGGYKKARKVYKSLQE--LPPFSLDLFRKMIQFEKEQESCN-LANIREYYDRALREFGADSD 531 (568)
T ss_pred cCCceeehhHHHHHHHHHhcchHHHHHHHHHHHh--CCCccHHHHHHHHHHHhhHhhcC-chHHHHHHHHHHHHhCCChH
Confidence 466766654 455666677888888888888873 445667777777764 33444 677777777762 336777
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHhh-cCCC
Q 036237 487 IWMSLLSGARNHGNKDIGEYAANNLIK-VAPD 517 (689)
Q Consensus 487 ~~~~ll~~~~~~g~~~~a~~~~~~~~~-~~p~ 517 (689)
.|...+.--..+|..+.+-.++.++.+ ++|.
T Consensus 532 lw~~y~~~e~~~g~~en~~~~~~ra~ktl~~~ 563 (568)
T KOG2396|consen 532 LWMDYMKEELPLGRPENCGQIYWRAMKTLQGE 563 (568)
T ss_pred HHHHHHHhhccCCCcccccHHHHHHHHhhChh
Confidence 887777777788888877777777666 5554
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=87.79 E-value=2.9 Score=36.85 Aligned_cols=53 Identities=17% Similarity=0.225 Sum_probs=32.1
Q ss_pred HhcCChHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCcchHHHHHHHHHhC
Q 036237 496 RNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKR 548 (689)
Q Consensus 496 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~~~~~g~~~~A~~~~~~m~~~ 548 (689)
...++.+.++.++..+.-+.|..+..-..-++.+...|+|.+|.++++.+.+.
T Consensus 21 l~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~ 73 (160)
T PF09613_consen 21 LRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEER 73 (160)
T ss_pred HccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhcc
Confidence 34456666666666666666666666666666666666666666666665543
|
|
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=87.71 E-value=31 Score=34.20 Aligned_cols=61 Identities=11% Similarity=-0.047 Sum_probs=27.1
Q ss_pred CChhHHHHHHHHHHhcCCHHHHHHHH-HhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCC
Q 036237 451 PTIEHYGCLVDILCRTGYLEEAKSTI-ESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAP 516 (689)
Q Consensus 451 p~~~~~~~li~~~~~~g~~~~A~~~~-~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p 516 (689)
++..+-..-+.++++.|.. +|...+ +.+. .++ .....+.++...|+. .|...+.++.+.+|
T Consensus 204 ~~~~VR~~A~~aLg~~~~~-~av~~Li~~L~-~~~--~~~~a~~ALg~ig~~-~a~p~L~~l~~~~~ 265 (280)
T PRK09687 204 KNEEIRIEAIIGLALRKDK-RVLSVLIKELK-KGT--VGDLIIEAAGELGDK-TLLPVLDTLLYKFD 265 (280)
T ss_pred CChHHHHHHHHHHHccCCh-hHHHHHHHHHc-CCc--hHHHHHHHHHhcCCH-hHHHHHHHHHhhCC
Confidence 3444444455555555553 233222 2222 122 123444555555553 45555555555555
|
|
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=87.38 E-value=20 Score=32.17 Aligned_cols=46 Identities=7% Similarity=0.024 Sum_probs=34.9
Q ss_pred HHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhhCCCCCe
Q 036237 143 QIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDL 188 (689)
Q Consensus 143 ~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 188 (689)
++...+.+.+++|+...+..+++.+.+.|++..-..++.--.-+|.
T Consensus 15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~qllq~~Vi~DS 60 (167)
T PF07035_consen 15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQLLQYHVIPDS 60 (167)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHhhcccCCc
Confidence 4455556778899999999999999999998888887765443443
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=87.37 E-value=37 Score=34.78 Aligned_cols=147 Identities=12% Similarity=0.036 Sum_probs=76.4
Q ss_pred ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC--hhH
Q 036237 381 KVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKP---TAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPT--IEH 455 (689)
Q Consensus 381 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p---~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~--~~~ 455 (689)
...+|..++..+.+.|+++.|...+.++...+..+ +......-....-..|+-++|...++...+. .+..+ ...
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~-~~~~~~~~~~ 223 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKC-RLSKNIDSIS 223 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHH-Hhhhcccccc
Confidence 44577788888888888888888888877643211 2223333445556677778888877777641 11111 111
Q ss_pred HHHHHHHHHhcCCHHHHHHH-HHhCCCCCCHHHHHHHHHHHHhc------CChHHHHHHHHHHhhcCCCCchhHHHHHHH
Q 036237 456 YGCLVDILCRTGYLEEAKST-IESMPMRPNFVIWMSLLSGARNH------GNKDIGEYAANNLIKVAPDTIGCYVVLSNI 528 (689)
Q Consensus 456 ~~~li~~~~~~g~~~~A~~~-~~~~~~~p~~~~~~~ll~~~~~~------g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~ 528 (689)
...+...+.. ..+..... ......+.-...+..+..-+... ++.+.+...|..+.++.|.....+..++..
T Consensus 224 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~ 301 (352)
T PF02259_consen 224 NAELKSGLLE--SLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALF 301 (352)
T ss_pred HHHHhhcccc--ccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHH
Confidence 1111111000 00000000 00000000011222223333333 788899999999999999877777777666
Q ss_pred HH
Q 036237 529 YA 530 (689)
Q Consensus 529 ~~ 530 (689)
+.
T Consensus 302 ~~ 303 (352)
T PF02259_consen 302 ND 303 (352)
T ss_pred HH
Confidence 54
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A | Back alignment and domain information |
|---|
Probab=87.33 E-value=3.4 Score=28.86 Aligned_cols=51 Identities=16% Similarity=0.270 Sum_probs=38.3
Q ss_pred hHHHHHHHHHhcCCcchHHHHHHHHHhCCCccCCcccEEEECCEEEEEeeCCCCCcChHHHHHHHHHHHHHHHHCCC
Q 036237 521 CYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGH 597 (689)
Q Consensus 521 ~~~~L~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~l~~l~~~m~~~g~ 597 (689)
.+..|+.++.+.|++++|.+..+.+.+. +|...++......+.++|.+.|+
T Consensus 3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~~--------------------------eP~N~Qa~~L~~~i~~~i~kdgl 53 (53)
T PF14853_consen 3 CLYYLAIGHYKLGEYEKARRYCDALLEI--------------------------EPDNRQAQSLKELIEDKIQKDGL 53 (53)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHH--------------------------TTS-HHHHHHHHHHHHHHHHTTT
T ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHhh--------------------------CCCcHHHHHHHHHHHHHHhccCC
Confidence 4667888999999999999999998762 35556666666777778887774
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=87.29 E-value=27 Score=35.87 Aligned_cols=69 Identities=17% Similarity=0.223 Sum_probs=56.5
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCC----CCchhHHHHHHHHHhcCCcchHHHHHHHHHhCCCc
Q 036237 483 PNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAP----DTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFR 551 (689)
Q Consensus 483 p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p----~~~~~~~~L~~~~~~~g~~~~A~~~~~~m~~~~~~ 551 (689)
....+|..+...++++|+++.|...+.++.+..+ ..+.....-+......|+.++|...++...+..+.
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~ 216 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLS 216 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhh
Confidence 3456899999999999999999999999988552 24567777889999999999999999888764333
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=86.99 E-value=32 Score=34.63 Aligned_cols=93 Identities=15% Similarity=0.082 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHhcc-CCCCcC---hhhHHHHHHHHHcccchhhHHHHHHHHHHhCCc-----cchh
Q 036237 282 ITWNSMIAGYELNGRFMEALELLETMLI-GDVLPN---DATLVSALSAVAGLAVLNKGRWMHSYIVKNGFV-----VDGV 352 (689)
Q Consensus 282 ~~~~~li~~~~~~g~~~~A~~~~~~m~~-~g~~p~---~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~-----~~~~ 352 (689)
.+|-.+..++-+..++.+++.+-+.-.. .|..|. -....++-.+....+.++++.+.|+.+.+.... ....
T Consensus 84 ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElq 163 (518)
T KOG1941|consen 84 EAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQ 163 (518)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeee
Confidence 3455555666555566666655444332 122221 112233445566666666666666665542211 1234
Q ss_pred HHhHHHhhHHhcCCHHHHHHHH
Q 036237 353 LGTLLIQMYSKCGSIESALTVF 374 (689)
Q Consensus 353 ~~~~li~~~~~~g~~~~A~~~~ 374 (689)
++-.|...|.+..++++|.-..
T Consensus 164 vcv~Lgslf~~l~D~~Kal~f~ 185 (518)
T KOG1941|consen 164 VCVSLGSLFAQLKDYEKALFFP 185 (518)
T ss_pred hhhhHHHHHHHHHhhhHHhhhh
Confidence 5556666666666666554433
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=86.99 E-value=1.4 Score=27.15 Aligned_cols=28 Identities=11% Similarity=0.093 Sum_probs=19.6
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 036237 383 GHWTAMIVGLGMHGMATQALDLFNKMCR 410 (689)
Q Consensus 383 ~~~~~li~~~~~~g~~~~A~~l~~~m~~ 410 (689)
.+|..+...|...|++++|+..|++.++
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 3566777777777777777777777766
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=86.80 E-value=11 Score=40.25 Aligned_cols=162 Identities=20% Similarity=0.179 Sum_probs=101.3
Q ss_pred CeehHHHHHH-----HHHhCCChHHHHHHHhhCCCCCcchHHHHHHHHHhCCChHHHHHHHhhcCcCCcchHHHHHHHHH
Q 036237 187 DLVSWNCLID-----GYVKKGEVEVAMKLFDEMPDRDLFSWTCLVDGFSKCGKVEIAREIFYRMPNRNLVSWNAMINGYM 261 (689)
Q Consensus 187 ~~~~~~~li~-----~~~~~g~~~~A~~~~~~m~~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~ 261 (689)
++.+|..++. ...-.|+++.|-.++..++++ .-+.++..+.+.|..++|+++-..- ..-.....
T Consensus 580 nVi~y~l~l~vleyqt~vmrrd~~~a~~vLp~I~k~---~rt~va~Fle~~g~~e~AL~~s~D~--------d~rFelal 648 (794)
T KOG0276|consen 580 NVISYKILLEVLEYQTLVLRRDLEVADGVLPTIPKE---IRTKVAHFLESQGMKEQALELSTDP--------DQRFELAL 648 (794)
T ss_pred ceEeEeeehHHHHHHHHhhhccccccccccccCchh---hhhhHHhHhhhccchHhhhhcCCCh--------hhhhhhhh
Confidence 4555544433 334457777777766666532 3445666677778888887663211 11223456
Q ss_pred hcCCHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHhccCCCCcChhhHHHHHHHHHcccchhhHHHHHHH
Q 036237 262 KAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSY 341 (689)
Q Consensus 262 ~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~ 341 (689)
+.|+++.|.++..+. .+..-|..|..+..+.|++..|.+.|..... |..++-.+...|+-+....+-..
T Consensus 649 ~lgrl~iA~~la~e~--~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~ 717 (794)
T KOG0276|consen 649 KLGRLDIAFDLAVEA--NSEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASL 717 (794)
T ss_pred hcCcHHHHHHHHHhh--cchHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHH
Confidence 778888888876653 3567899999999999999999999987754 44566666667766655555555
Q ss_pred HHHhCCccchhHHhHHHhhHHhcCCHHHHHHHHHh
Q 036237 342 IVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRA 376 (689)
Q Consensus 342 ~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 376 (689)
..+.|.. |...-+|...|+++++.+++.+
T Consensus 718 ~~~~g~~------N~AF~~~~l~g~~~~C~~lLi~ 746 (794)
T KOG0276|consen 718 AKKQGKN------NLAFLAYFLSGDYEECLELLIS 746 (794)
T ss_pred HHhhccc------chHHHHHHHcCCHHHHHHHHHh
Confidence 5555421 1222334555666666665544
|
|
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=86.77 E-value=3.2 Score=35.99 Aligned_cols=53 Identities=9% Similarity=0.100 Sum_probs=41.1
Q ss_pred hcCChHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCcchHHHHHHHHHhCC
Q 036237 497 NHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRG 549 (689)
Q Consensus 497 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~~~~~g~~~~A~~~~~~m~~~~ 549 (689)
..++.+.++.+++.+.-+.|+.+..-..-++.+...|+|++|.++++...+.+
T Consensus 22 ~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~ 74 (153)
T TIGR02561 22 RSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSA 74 (153)
T ss_pred hcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccC
Confidence 36777777777777777888877777777788888888888888888777655
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=86.42 E-value=19 Score=30.54 Aligned_cols=57 Identities=12% Similarity=0.123 Sum_probs=28.0
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhH
Q 036237 387 AMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMI 444 (689)
Q Consensus 387 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~ 444 (689)
..+..+...|+-+.-.+++.++... -+|++.....+..||.+.|+..++.+++.++-
T Consensus 91 ~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~AC 147 (161)
T PF09205_consen 91 LALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEAC 147 (161)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHH
Confidence 3444555555555555555555432 24555555555566666666666666655554
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=85.91 E-value=17 Score=33.08 Aligned_cols=94 Identities=13% Similarity=0.074 Sum_probs=49.7
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHhccCcHHHHHHHHHHhHHhc--CCCCC----hhH
Q 036237 384 HWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAI--TFIGVLNACSHAGLVNDGRRYFNMMINDY--GIEPT----IEH 455 (689)
Q Consensus 384 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~--t~~~ll~a~~~~g~~~~a~~~~~~~~~~~--~~~p~----~~~ 455 (689)
.+..+..-|.+.|+.++|++.|.++.+....|... .+..++..+...+++..+.....++..-. +-+++ ...
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk~ 117 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLKV 117 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence 45555666666666666666666666654444433 34555566666666666666655554211 11111 112
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhC
Q 036237 456 YGCLVDILCRTGYLEEAKSTIESM 479 (689)
Q Consensus 456 ~~~li~~~~~~g~~~~A~~~~~~~ 479 (689)
|..|. +...+++.+|-+.|-+.
T Consensus 118 ~~gL~--~l~~r~f~~AA~~fl~~ 139 (177)
T PF10602_consen 118 YEGLA--NLAQRDFKEAAELFLDS 139 (177)
T ss_pred HHHHH--HHHhchHHHHHHHHHcc
Confidence 22222 23456777777777665
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=85.46 E-value=14 Score=33.03 Aligned_cols=121 Identities=16% Similarity=0.166 Sum_probs=65.2
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChh-HHHHH--HHHHHhcC
Q 036237 392 LGMHGMATQALDLFNKMCRMGMKPTAI-TFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIE-HYGCL--VDILCRTG 467 (689)
Q Consensus 392 ~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~-~~~~l--i~~~~~~g 467 (689)
+++.+..++|+.-|..+.+.|...=++ ..........+.|+...|...|+++-.+. -.|-+. -..-| .-++...|
T Consensus 68 lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt-~~P~~~rd~ARlraa~lLvD~g 146 (221)
T COG4649 68 LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADT-SIPQIGRDLARLRAAYLLVDNG 146 (221)
T ss_pred HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccC-CCcchhhHHHHHHHHHHHhccc
Confidence 345566667777776666655322111 11222233456677777777777766432 222211 11111 12345667
Q ss_pred CHHHHHHHHHhCCCCCC---HHHHHHHHHHHHhcCChHHHHHHHHHHhh
Q 036237 468 YLEEAKSTIESMPMRPN---FVIWMSLLSGARNHGNKDIGEYAANNLIK 513 (689)
Q Consensus 468 ~~~~A~~~~~~~~~~p~---~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 513 (689)
.+++...-.+.+..+.+ ...-.+|.-+-.+.|++..|...|..+..
T Consensus 147 sy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 147 SYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred cHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 77777777766632222 22335566666777888888877777766
|
|
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=85.43 E-value=2.8 Score=41.29 Aligned_cols=79 Identities=13% Similarity=0.024 Sum_probs=56.9
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcC
Q 036237 389 IVGLGMHGMATQALDLFNKMCRMGMKP-TAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTG 467 (689)
Q Consensus 389 i~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g 467 (689)
..-|.++|.+++|+..|..... +.| |.+++..-..||.+...+..|..-....+. .| ...+.+|.|.|
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia--~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~Aia-----Ld----~~Y~KAYSRR~ 172 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIA--VYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIA-----LD----KLYVKAYSRRM 172 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhc--cCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHH-----hh----HHHHHHHHHHH
Confidence 4569999999999999998876 677 899999999999999998888776665552 11 23456666655
Q ss_pred CHHHHHHHHHh
Q 036237 468 YLEEAKSTIES 478 (689)
Q Consensus 468 ~~~~A~~~~~~ 478 (689)
.-.+++..+.+
T Consensus 173 ~AR~~Lg~~~E 183 (536)
T KOG4648|consen 173 QARESLGNNME 183 (536)
T ss_pred HHHHHHhhHHH
Confidence 44444443333
|
|
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=84.74 E-value=20 Score=35.76 Aligned_cols=63 Identities=16% Similarity=0.193 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHCCCCCCHH--HHHHHHHHHhccCc--HHHHHHHHHHhHHhcCCCCChhHHHHHHHH
Q 036237 399 TQALDLFNKMCRMGMKPTAI--TFIGVLNACSHAGL--VNDGRRYFNMMINDYGIEPTIEHYGCLVDI 462 (689)
Q Consensus 399 ~~A~~l~~~m~~~g~~p~~~--t~~~ll~a~~~~g~--~~~a~~~~~~~~~~~~~~p~~~~~~~li~~ 462 (689)
+++..+|+.+.+.|+..+.. ....++..+..... +.++..+++.+.+ .++++...+|..+.-+
T Consensus 160 ~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~-~~~kik~~~yp~lGlL 226 (297)
T PF13170_consen 160 ERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKK-NGVKIKYMHYPTLGLL 226 (297)
T ss_pred HHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHH-cCCccccccccHHHHH
Confidence 56677888888877666533 33333333322222 4577788888874 4888888777665443
|
|
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=84.67 E-value=34 Score=31.84 Aligned_cols=125 Identities=14% Similarity=0.092 Sum_probs=62.2
Q ss_pred CCCHHHHHHHHhcccC-CC-ChhhHHHHHHHHHhCCCchHHHHHHHHhHhCCCCCCcccHHHHHHHH--HhcCChHHHHH
Q 036237 68 INNLHYARSIFDRILQ-HP-SLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGA--ARLGAIKEGKQ 143 (689)
Q Consensus 68 ~g~~~~A~~~f~~~~~-~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~--~~~~~~~~a~~ 143 (689)
.|-..-|+-=|.+... .| -+..||-+---+...|+++.|.+.|+...+.... .-|..+=++. --.|++..|.+
T Consensus 78 lGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~---y~Ya~lNRgi~~YY~gR~~LAq~ 154 (297)
T COG4785 78 LGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPT---YNYAHLNRGIALYYGGRYKLAQD 154 (297)
T ss_pred hhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCc---chHHHhccceeeeecCchHhhHH
Confidence 3444444444443322 23 2346777777778888888888888887765322 2233333322 23466776666
Q ss_pred HHHHHHHhCCCCch--hHHHHHHHHHHhcCChHHHHH-HHhhCCCCCeehHHHHHHHHH
Q 036237 144 IHGLVFKLGFGFDK--FVLSSLVSMYAKFGEIDLGRR-VFDAMDDKDLVSWNCLIDGYV 199 (689)
Q Consensus 144 ~~~~~~~~g~~~~~--~~~~~li~~~~~~g~~~~A~~-~~~~m~~~~~~~~~~li~~~~ 199 (689)
=+-..-+.. +.|+ ..|--|+. ..-++.+|.. +.++....|..-|..-|-.|.
T Consensus 155 d~~~fYQ~D-~~DPfR~LWLYl~E---~k~dP~~A~tnL~qR~~~~d~e~WG~~iV~~y 209 (297)
T COG4785 155 DLLAFYQDD-PNDPFRSLWLYLNE---QKLDPKQAKTNLKQRAEKSDKEQWGWNIVEFY 209 (297)
T ss_pred HHHHHHhcC-CCChHHHHHHHHHH---hhCCHHHHHHHHHHHHHhccHhhhhHHHHHHH
Confidence 555444443 2222 23333222 1223444443 333444455555655554443
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=84.50 E-value=1.6 Score=27.16 Aligned_cols=31 Identities=13% Similarity=0.193 Sum_probs=21.6
Q ss_pred HHHHHhCCCCchhHHHHHHHHHHhcCChHHHH
Q 036237 146 GLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGR 177 (689)
Q Consensus 146 ~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 177 (689)
++.++.. +-+...|+.|...|...|++++|+
T Consensus 3 ~kAie~~-P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 3 KKAIELN-PNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred HHHHHHC-CCCHHHHHHHHHHHHHCcCHHhhc
Confidence 4445554 556777888888888888887775
|
|
| >PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A | Back alignment and domain information |
|---|
Probab=84.37 E-value=2.5 Score=29.55 Aligned_cols=31 Identities=19% Similarity=0.300 Sum_probs=25.5
Q ss_pred HHHHHHHhcCChHHHHHHHHHHhhcCCCCch
Q 036237 490 SLLSGARNHGNKDIGEYAANNLIKVAPDTIG 520 (689)
Q Consensus 490 ~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 520 (689)
.+.-++.+.|+++.|.+..+.+++++|+|..
T Consensus 6 ~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Q 36 (53)
T PF14853_consen 6 YLAIGHYKLGEYEKARRYCDALLEIEPDNRQ 36 (53)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHHTTS-HH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhhCCCcHH
Confidence 4566789999999999999999999999853
|
|
| >TIGR02508 type_III_yscG type III secretion protein, YscG family | Back alignment and domain information |
|---|
Probab=84.26 E-value=12 Score=29.88 Aligned_cols=60 Identities=23% Similarity=0.211 Sum_probs=43.3
Q ss_pred HHHHhcCCHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHhccCCCCcChhhHH
Q 036237 258 NGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLV 320 (689)
Q Consensus 258 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~ 320 (689)
..+...|++++|..+.+.+..||...|-+|-.. +.|..+++..-+.+|...| .|...+|.
T Consensus 47 sSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce~--rlGl~s~l~~rl~rla~sg-~p~lq~Fa 106 (115)
T TIGR02508 47 SSLMNRGDYQSALQLGNKLCYPDLEPWLALCEW--RLGLGSALESRLNRLAASG-DPRLQTFV 106 (115)
T ss_pred HHHHccchHHHHHHhcCCCCCchHHHHHHHHHH--hhccHHHHHHHHHHHHhCC-CHHHHHHH
Confidence 346678899999999998888999999877654 5677777777777776665 44444443
|
YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc. |
| >TIGR02508 type_III_yscG type III secretion protein, YscG family | Back alignment and domain information |
|---|
Probab=84.23 E-value=15 Score=29.41 Aligned_cols=61 Identities=20% Similarity=0.313 Sum_probs=45.7
Q ss_pred hhHHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 036237 359 QMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIG 422 (689)
Q Consensus 359 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ 422 (689)
..+...|++++|..+.+....||+..|-+|-. .+.|..+++..-+.+|...| .|...+|..
T Consensus 47 sSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce--~rlGl~s~l~~rl~rla~sg-~p~lq~Faa 107 (115)
T TIGR02508 47 SSLMNRGDYQSALQLGNKLCYPDLEPWLALCE--WRLGLGSALESRLNRLAASG-DPRLQTFVA 107 (115)
T ss_pred HHHHccchHHHHHHhcCCCCCchHHHHHHHHH--HhhccHHHHHHHHHHHHhCC-CHHHHHHHH
Confidence 34567889999999888888889888887755 45677777777777887776 565555544
|
YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc. |
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=84.21 E-value=11 Score=34.33 Aligned_cols=94 Identities=17% Similarity=-0.007 Sum_probs=62.1
Q ss_pred hHHHHHHHHHhCCCchHHHHHHHHhHhCCCCCCc--ccHHHHHHHHHhcCChHHHHHHHHHHHHhCCCC-chh------H
Q 036237 89 LYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDN--FTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGF-DKF------V 159 (689)
Q Consensus 89 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~--~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~-~~~------~ 159 (689)
.|..+...|.+.|+.+.|++.|.++++....|.. ..+-.+++.+.-.+++..+.....++...--.+ |.. +
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk~ 117 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLKV 117 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence 5777888888899999999999988876544433 356677777788888888887777665442221 221 2
Q ss_pred HHHHHHHHHhcCChHHHHHHHhhCC
Q 036237 160 LSSLVSMYAKFGEIDLGRRVFDAMD 184 (689)
Q Consensus 160 ~~~li~~~~~~g~~~~A~~~~~~m~ 184 (689)
|..|.. ...|++..|-+.|-+..
T Consensus 118 ~~gL~~--l~~r~f~~AA~~fl~~~ 140 (177)
T PF10602_consen 118 YEGLAN--LAQRDFKEAAELFLDSL 140 (177)
T ss_pred HHHHHH--HHhchHHHHHHHHHccC
Confidence 222222 24577877777776654
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=83.93 E-value=2.4 Score=25.93 Aligned_cols=27 Identities=19% Similarity=0.257 Sum_probs=18.4
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 036237 384 HWTAMIVGLGMHGMATQALDLFNKMCR 410 (689)
Q Consensus 384 ~~~~li~~~~~~g~~~~A~~l~~~m~~ 410 (689)
.|..+...|.+.|++++|++.|++..+
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 456666777777777777777777665
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >PRK11619 lytic murein transglycosylase; Provisional | Back alignment and domain information |
|---|
Probab=83.75 E-value=82 Score=35.48 Aligned_cols=116 Identities=12% Similarity=0.021 Sum_probs=62.5
Q ss_pred cCCHHHHHHHHHHHHHCC-CCCCHH--HHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHH
Q 036237 395 HGMATQALDLFNKMCRMG-MKPTAI--TFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEE 471 (689)
Q Consensus 395 ~g~~~~A~~l~~~m~~~g-~~p~~~--t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~ 471 (689)
..+.+.|..++....... ..+... ....+.......+..+++...++.... ...+......-+..-.+.++++.
T Consensus 254 r~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~---~~~~~~~~e~r~r~Al~~~dw~~ 330 (644)
T PRK11619 254 RQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIM---RSQSTSLLERRVRMALGTGDRRG 330 (644)
T ss_pred HhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhccc---ccCCcHHHHHHHHHHHHccCHHH
Confidence 455677888887764432 333322 233333333333224566666665442 11234444455555557888888
Q ss_pred HHHHHHhCCC--CCCHHHHHHHHHHHHhcCChHHHHHHHHHHhh
Q 036237 472 AKSTIESMPM--RPNFVIWMSLLSGARNHGNKDIGEYAANNLIK 513 (689)
Q Consensus 472 A~~~~~~~~~--~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 513 (689)
+...|..|+. +-...-.-=+..+....|+.+.|...|+++..
T Consensus 331 ~~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~ 374 (644)
T PRK11619 331 LNTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLMQ 374 (644)
T ss_pred HHHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 8888888742 11112122244555557888888888887643
|
|
| >PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi | Back alignment and domain information |
|---|
Probab=83.73 E-value=81 Score=35.41 Aligned_cols=58 Identities=17% Similarity=0.274 Sum_probs=35.4
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHhhc---CCCCchhH------HHHHHHHHhcCCcchHHHHHHHHH
Q 036237 489 MSLLSGARNHGNKDIGEYAANNLIKV---APDTIGCY------VVLSNIYAAAGQWDKVSEVREMMK 546 (689)
Q Consensus 489 ~~ll~~~~~~g~~~~a~~~~~~~~~~---~p~~~~~~------~~L~~~~~~~g~~~~A~~~~~~m~ 546 (689)
.+++..-.-.|+.++..........+ .|+..... ..+.+.|...|+.++|.....+..
T Consensus 538 L~lm~~~lf~~~~~e~~~~s~~a~~~A~k~~d~~~~LW~~v~~~~l~~~~~~~G~~~ka~~~~~~~~ 604 (608)
T PF10345_consen 538 LNLMGHRLFEGDVGEQAKKSARAFQLAKKSSDYSDQLWHLVASGMLADSYEVQGDRDKAEEARQQLD 604 (608)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHH
Confidence 33444433368887766666555542 23333222 255666888999999998887654
|
It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 []. |
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=82.68 E-value=2.7 Score=27.16 Aligned_cols=25 Identities=12% Similarity=0.088 Sum_probs=10.7
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHh
Q 036237 488 WMSLLSGARNHGNKDIGEYAANNLI 512 (689)
Q Consensus 488 ~~~ll~~~~~~g~~~~a~~~~~~~~ 512 (689)
++.|...|...|++++|+.++++++
T Consensus 5 ~~~la~~~~~~g~~~~A~~~~~~al 29 (42)
T PF13374_consen 5 LNNLANAYRAQGRYEEALELLEEAL 29 (42)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhcchhhHHHHHHH
Confidence 3444444444444444444444443
|
|
| >KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=82.56 E-value=38 Score=31.98 Aligned_cols=23 Identities=4% Similarity=-0.074 Sum_probs=15.8
Q ss_pred HhcCChHHHHHHHHHHhhcCCCC
Q 036237 496 RNHGNKDIGEYAANNLIKVAPDT 518 (689)
Q Consensus 496 ~~~g~~~~a~~~~~~~~~~~p~~ 518 (689)
...+++..|+.+|+++..-.-++
T Consensus 165 a~leqY~~Ai~iyeqva~~s~~n 187 (288)
T KOG1586|consen 165 AQLEQYSKAIDIYEQVARSSLDN 187 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHhccc
Confidence 45577888888888877644433
|
|
| >PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models | Back alignment and domain information |
|---|
Probab=82.30 E-value=1.5 Score=25.25 Aligned_cols=24 Identities=17% Similarity=0.200 Sum_probs=18.5
Q ss_pred hhHHHHHHHHHhcCCcchHHHHHH
Q 036237 520 GCYVVLSNIYAAAGQWDKVSEVRE 543 (689)
Q Consensus 520 ~~~~~L~~~~~~~g~~~~A~~~~~ 543 (689)
.....|+.++...|++++|..+++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHh
Confidence 456678888888888888887765
|
The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding |
| >PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1 | Back alignment and domain information |
|---|
Probab=82.12 E-value=10 Score=30.44 Aligned_cols=60 Identities=15% Similarity=0.212 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHH
Q 036237 400 QALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVD 461 (689)
Q Consensus 400 ~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 461 (689)
+..+-+..+....+-|++....+.|.||.+.+++.-|.++|+.++.+.+ +....|..+++
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~--~~~~~Y~~~lq 87 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCG--NKKEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTT--T-TTHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcc--ChHHHHHHHHH
Confidence 5556666677777899999999999999999999999999999986544 44447777765
|
9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R .... |
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=81.79 E-value=7.5 Score=38.04 Aligned_cols=101 Identities=14% Similarity=0.193 Sum_probs=59.4
Q ss_pred CCCCCchHHHHHhhcccccCCCCHHHHHHHHhcccCCCC------hhhHHHHHHHHHhCCCchHHHHHHHHhHhCCCCCC
Q 036237 48 NLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPS------LVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPD 121 (689)
Q Consensus 48 g~~~~~~~~~~ll~~~~~~~~g~~~~A~~~f~~~~~~~~------~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~ 121 (689)
|.+..+.+...++..-.. ...++++...+-++...|+ ...+ +.++-+ -.-++++++.++..=.+-|+.||
T Consensus 59 g~~~s~~~Vd~~V~v~~~--~~~idd~~~~LyKlRhs~~a~~~~~~~~~-~~irll-lky~pq~~i~~l~npIqYGiF~d 134 (418)
T KOG4570|consen 59 GLPVSSLTVDRLVDVISS--REEIDDAEYYLYKLRHSPNAWYLRNWTIH-TWIRLL-LKYDPQKAIYTLVNPIQYGIFPD 134 (418)
T ss_pred CCCcceeehhhhhhcccc--ccchhHHHHHHHHHhcCcchhhhccccHH-HHHHHH-HccChHHHHHHHhCcchhccccc
Confidence 444444444555554443 5667777766655542222 1111 122222 23366677777777777777777
Q ss_pred cccHHHHHHHHHhcCChHHHHHHHHHHHHhC
Q 036237 122 NFTLPCVIKGAARLGAIKEGKQIHGLVFKLG 152 (689)
Q Consensus 122 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g 152 (689)
.++++.+|..+.+.++...|.++...|+...
T Consensus 135 qf~~c~l~D~flk~~n~~~aa~vvt~~~~qe 165 (418)
T KOG4570|consen 135 QFTFCLLMDSFLKKENYKDAASVVTEVMMQE 165 (418)
T ss_pred hhhHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 7777777777777777777777776666554
|
|
| >TIGR02270 conserved hypothetical protein | Back alignment and domain information |
|---|
Probab=81.68 E-value=74 Score=33.49 Aligned_cols=172 Identities=7% Similarity=0.011 Sum_probs=81.2
Q ss_pred HHHHHHHhCCCchHHHHHHHHhHhCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcC
Q 036237 92 LLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFG 171 (689)
Q Consensus 92 ~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g 171 (689)
.-|.++...| ..+++.+....... ++...+.....++....+......+.+.+ -.++..+....+..+.+.+
T Consensus 43 AhLdgL~~~G--~~a~~~L~~aL~~d--~~~ev~~~aa~al~~~~~~~~~~~L~~~L----~d~~~~vr~aaa~ALg~i~ 114 (410)
T TIGR02270 43 AHVDGLVLAG--KAATELLVSALAEA--DEPGRVACAALALLAQEDALDLRSVLAVL----QAGPEGLCAGIQAALGWLG 114 (410)
T ss_pred HHHHHHHHhh--HhHHHHHHHHHhhC--CChhHHHHHHHHHhccCChHHHHHHHHHh----cCCCHHHHHHHHHHHhcCC
Confidence 3366676677 45666666655432 23333333333333222222122222222 2455556777777777777
Q ss_pred ChHHHHHHHhhCCCCCeehHHHHHHHHHhCCChHHHHHHHhhCCCCCcchHHHHHHHHHhCCChHHHHHHHhhcCcCCcc
Q 036237 172 EIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDRDLFSWTCLVDGFSKCGKVEIAREIFYRMPNRNLV 251 (689)
Q Consensus 172 ~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 251 (689)
+.+....+...+...+...-.+.+.++...+. +-...+..-+..+|...-..-+.++...+..+..-.+..-....+..
T Consensus 115 ~~~a~~~L~~~L~~~~p~vR~aal~al~~r~~-~~~~~L~~~L~d~d~~Vra~A~raLG~l~~~~a~~~L~~al~d~~~~ 193 (410)
T TIGR02270 115 GRQAEPWLEPLLAASEPPGRAIGLAALGAHRH-DPGPALEAALTHEDALVRAAALRALGELPRRLSESTLRLYLRDSDPE 193 (410)
T ss_pred chHHHHHHHHHhcCCChHHHHHHHHHHHhhcc-ChHHHHHHHhcCCCHHHHHHHHHHHHhhccccchHHHHHHHcCCCHH
Confidence 76666666655555555554455555554332 11112222222444444455555555555443333322223334555
Q ss_pred hHHHHHHHHHhcCCHHHHHHHH
Q 036237 252 SWNAMINGYMKAGDVDSACELF 273 (689)
Q Consensus 252 ~~~~li~~~~~~g~~~~A~~~~ 273 (689)
+-..-+.+....|. ++|....
T Consensus 194 VR~aA~~al~~lG~-~~A~~~l 214 (410)
T TIGR02270 194 VRFAALEAGLLAGS-RLAWGVC 214 (410)
T ss_pred HHHHHHHHHHHcCC-HhHHHHH
Confidence 55555555555555 4444333
|
Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown. |
| >PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=81.66 E-value=1.2e+02 Score=35.92 Aligned_cols=256 Identities=9% Similarity=-0.041 Sum_probs=146.8
Q ss_pred HHHHHHhhCCCCCeehHHHHHHHHHhCCChHHHHHHHhhCCCCCcchHHHHHHHHHhCCCh-HHHHHHHhhcCcCCcchH
Q 036237 175 LGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDRDLFSWTCLVDGFSKCGKV-EIAREIFYRMPNRNLVSW 253 (689)
Q Consensus 175 ~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~d~~~~~~li~~~~~~g~~-~~A~~~~~~~~~~~~~~~ 253 (689)
....+.+.+..+|+..--.-+..+.+.+..+..-.+...+..+|...-...+.++.+.+.. .....+...+..++..+-
T Consensus 622 ~~~~L~~~L~D~d~~VR~~Av~~L~~~~~~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~~~~~~L~~~L~~~d~~VR 701 (897)
T PRK13800 622 SVAELAPYLADPDPGVRRTAVAVLTETTPPGFGPALVAALGDGAAAVRRAAAEGLRELVEVLPPAPALRDHLGSPDPVVR 701 (897)
T ss_pred hHHHHHHHhcCCCHHHHHHHHHHHhhhcchhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCchHHHHHHhcCCCHHHH
Confidence 3345555556777777777777777777654434444555555555555555555444321 111222233334666666
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHhccCCCCcChhhHHHHHHHHHcccchh
Q 036237 254 NAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLN 333 (689)
Q Consensus 254 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~ 333 (689)
...++.+...+.- ....+...+..+|...=...+.++.+.+..+. +..... .++...-..+..++...+..+
T Consensus 702 ~~A~~aL~~~~~~-~~~~l~~~L~D~d~~VR~~Av~aL~~~~~~~~----l~~~l~---D~~~~VR~~aa~aL~~~~~~~ 773 (897)
T PRK13800 702 AAALDVLRALRAG-DAALFAAALGDPDHRVRIEAVRALVSVDDVES----VAGAAT---DENREVRIAVAKGLATLGAGG 773 (897)
T ss_pred HHHHHHHHhhccC-CHHHHHHHhcCCCHHHHHHHHHHHhcccCcHH----HHHHhc---CCCHHHHHHHHHHHHHhcccc
Confidence 6777777655422 12345556666776665666666666554432 222222 345555555666666665543
Q ss_pred h-HHHHHHHHHHhCCccchhHHhHHHhhHHhcCCHHHHH-HHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 036237 334 K-GRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESAL-TVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRM 411 (689)
Q Consensus 334 ~-a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~-~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 411 (689)
. +...+..+.+ .+|..+-.+.+..+.+.|..+.+. .+...+..++...-...+.++...+. .++...+..+.+
T Consensus 774 ~~~~~~L~~ll~---D~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~-~~a~~~L~~~L~- 848 (897)
T PRK13800 774 APAGDAVRALTG---DPDPLVRAAALAALAELGCPPDDVAAATAALRASAWQVRQGAARALAGAAA-DVAVPALVEALT- 848 (897)
T ss_pred chhHHHHHHHhc---CCCHHHHHHHHHHHHhcCCcchhHHHHHHHhcCCChHHHHHHHHHHHhccc-cchHHHHHHHhc-
Confidence 2 2233333332 456778888888888888765553 34455555666666667777777765 456677666664
Q ss_pred CCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHH
Q 036237 412 GMKPTAITFIGVLNACSHAGLVNDGRRYFNMMIN 445 (689)
Q Consensus 412 g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 445 (689)
.|+...-...+.++.+...-..+...+..+.+
T Consensus 849 --D~~~~VR~~A~~aL~~~~~~~~a~~~L~~al~ 880 (897)
T PRK13800 849 --DPHLDVRKAAVLALTRWPGDPAARDALTTALT 880 (897)
T ss_pred --CCCHHHHHHHHHHHhccCCCHHHHHHHHHHHh
Confidence 66776666777777775434566777766664
|
|
| >cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va | Back alignment and domain information |
|---|
Probab=80.81 E-value=11 Score=29.87 Aligned_cols=63 Identities=14% Similarity=0.193 Sum_probs=48.1
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHH
Q 036237 397 MATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVD 461 (689)
Q Consensus 397 ~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 461 (689)
+.-++.+-++.+....+-|++....+.+.||.+.+++.-|.++|+.++.+.+ .+...|..+++
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~--~~~~~y~~~lq 84 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCG--AHKEIYPYILQ 84 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcc--CchhhHHHHHH
Confidence 3445666667777777899999999999999999999999999998874333 34556666654
|
Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios. |
| >PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=80.40 E-value=1.3e+02 Score=35.59 Aligned_cols=49 Identities=6% Similarity=0.019 Sum_probs=21.8
Q ss_pred CChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 036237 451 PTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHG 499 (689)
Q Consensus 451 p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g 499 (689)
++...-...+..+++.|..+.+...+..+-..+|..+-..-+.++...+
T Consensus 787 ~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~ 835 (897)
T PRK13800 787 PDPLVRAAALAALAELGCPPDDVAAATAALRASAWQVRQGAARALAGAA 835 (897)
T ss_pred CCHHHHHHHHHHHHhcCCcchhHHHHHHHhcCCChHHHHHHHHHHHhcc
Confidence 4455555555555555554433222222222344444444444444444
|
|
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=80.21 E-value=48 Score=30.41 Aligned_cols=114 Identities=10% Similarity=0.056 Sum_probs=72.8
Q ss_pred HHHHHHHHHHHCCCCCCHHHHH--HHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHH-----HHHHHHhcCCHHHH
Q 036237 400 QALDLFNKMCRMGMKPTAITFI--GVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGC-----LVDILCRTGYLEEA 472 (689)
Q Consensus 400 ~A~~l~~~m~~~g~~p~~~t~~--~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~-----li~~~~~~g~~~~A 472 (689)
+.....+++....-+-..-++. .+...+...+++++|..-++.... .|....+.. |.......|.+++|
T Consensus 70 ~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~----~t~De~lk~l~~lRLArvq~q~~k~D~A 145 (207)
T COG2976 70 KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALA----QTKDENLKALAALRLARVQLQQKKADAA 145 (207)
T ss_pred hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHc----cchhHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 5555566666532111112222 234567788899999888887662 133333433 44567788999999
Q ss_pred HHHHHhCCCC-CCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCC
Q 036237 473 KSTIESMPMR-PNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPD 517 (689)
Q Consensus 473 ~~~~~~~~~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 517 (689)
+..++....+ -.......-.+.+...|+.++|+..|+++++.+++
T Consensus 146 L~~L~t~~~~~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s 191 (207)
T COG2976 146 LKTLDTIKEESWAAIVAELRGDILLAKGDKQEARAAYEKALESDAS 191 (207)
T ss_pred HHHHhccccccHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHccCC
Confidence 9999876421 12222344456788999999999999999998754
|
|
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=80.14 E-value=2.7 Score=27.17 Aligned_cols=28 Identities=25% Similarity=0.374 Sum_probs=24.4
Q ss_pred hhHHHHHHHHHhcCCcchHHHHHHHHHh
Q 036237 520 GCYVVLSNIYAAAGQWDKVSEVREMMKK 547 (689)
Q Consensus 520 ~~~~~L~~~~~~~g~~~~A~~~~~~m~~ 547 (689)
.++..|+.+|...|++++|..++++..+
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 4788999999999999999999998864
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 59.5 bits (143), Expect = 3e-09
Identities = 96/720 (13%), Positives = 201/720 (27%), Gaps = 245/720 (34%)
Query: 41 HALSVKTNLIYHSGISSRLLSLYVDPHINNLH------YARSIF-----DRILQHPSLVL 89
H + +T + +LS++ D ++N +SI D I+ V
Sbjct: 5 HHMDFETGEHQYQ--YKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAV- 61
Query: 90 YNLLIKCYVFNQRSHEALTLFCD----LLDRFL---LPDNFTLPCVIKGAARLGAIKEGK 142
+ ++ +F+ L N+
Sbjct: 62 -----------SGTLRLFWTLLSKQEEMVQKFVEEVLRINY------------------- 91
Query: 143 QIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWN---CLIDGYV 199
KF++S + + + + R++ D+ +N V
Sbjct: 92 --------------KFLMSPIKTEQR---QPSMMTRMYIEQRDR---LYNDNQVFAKYNV 131
Query: 200 KKGEVEVAMK--LFDEMPDRDLFSWTCLVDGFSKCGK----VEIAR--EIFYRMPNRNLV 251
+ + + ++ L + P +++ +DG GK +++ ++ +M + +
Sbjct: 132 SRLQPYLKLRQALLELRPAKNVL-----IDGVLGSGKTWVALDVCLSYKVQCKMDFK--I 184
Query: 252 SWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGD 311
W + + +S + LE+L+ L+
Sbjct: 185 FW-------LNLKNCNSPETV----------------------------LEMLQK-LLYQ 208
Query: 312 VLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESAL 371
+ PN + + ++ + + L + Y C L
Sbjct: 209 IDPNWTSRSDH---------------SSNIKLRIHSIQAELRRLLKSKPYENC------L 247
Query: 372 TVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAIT--FIGVLNACSH 429
V + K + FN C+ +T F V +
Sbjct: 248 LVLLNVQNAKA-------------------WNAFNLSCK-----ILLTTRFKQVTDF--- 280
Query: 430 AGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDIL-CRTGYL-EEAKSTIESMPMRPNFVI 487
L + ++ + + P E L+ L CR L E +T P R + +I
Sbjct: 281 --LSAATTTHISLDHHSMTLTPD-EVKSLLLKYLDCRPQDLPREVLTT---NPRRLS-II 333
Query: 488 WMSLLSGARNHGN-----KDIGEYAANNLIKVA-----PDTI-GCYVVLS------NIYA 530
S+ R+ K + +I+ + P + LS +I
Sbjct: 334 AESI----RDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPT 389
Query: 531 AAGQ--WDKVSE------VREMMKKRGFRKDPGSSSIEHRGVLHEFVVGDKSHPQTD-EI 581
W V + V ++ K K P S+I + + K + + +
Sbjct: 390 ILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTIS----IPSIYLELKVKLENEYAL 445
Query: 582 HSKLSEMRNKLKAAGHVPDTTQVLLCIEDQ-----------KEKEAELENHSERLAIAFG 630
H + + N K D+ ++ DQ + E + + F
Sbjct: 446 HRSIVDHYNIPKTF----DSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFR 501
Query: 631 LINVKSRSPIRIVKNLRVCNDCHSVTKLLSGI--YNREIIVRDNSRFHHFKNGSCSCKDF 688
+ K I + N S+ L + Y I D ++ + DF
Sbjct: 502 FLEQK------IRHDSTAWNASGSILNTLQQLKFYKPYICDNDP----KYERLVNAILDF 551
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 53.3 bits (126), Expect = 2e-07
Identities = 19/186 (10%), Positives = 51/186 (27%), Gaps = 12/186 (6%)
Query: 103 SHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSS 162
A L P L +++ A ++ + G + + L +
Sbjct: 73 KQMAGCLEDCTRQAPESPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLA 132
Query: 163 LVSMYAKFGEIDLGRRVFDAMDDK-------DLVSWNCLIDGYVKKGEVEVAMKLFDEMP 215
++ L + + L +N ++ G+ ++G + + + +
Sbjct: 133 FFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVK 192
Query: 216 DR----DLFSWTCLVDGFSKCGK-VEIAREIFYRMPNRNLVSWNAMINGYMKAGDVDSAC 270
D DL S+ + + + +M L + D +
Sbjct: 193 DAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVL 252
Query: 271 ELFDDM 276
+ +
Sbjct: 253 KAVHKV 258
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 51.0 bits (120), Expect = 1e-06
Identities = 13/88 (14%), Positives = 31/88 (35%), Gaps = 7/88 (7%)
Query: 247 NRNLVSWNAMINGYMKAGDVDSACELFDDM-------EIRDLITWNSMIAGYELNGRFME 299
+ A + + A L ++ L +N+++ G+ G F E
Sbjct: 124 SGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKE 183
Query: 300 ALELLETMLIGDVLPNDATLVSALSAVA 327
+ +L + + P+ + +AL +
Sbjct: 184 LVYVLFMVKDAGLTPDLLSYAAALQCMG 211
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 47.5 bits (111), Expect = 1e-05
Identities = 14/135 (10%), Positives = 39/135 (28%), Gaps = 9/135 (6%)
Query: 357 LIQMYSKCGSIESALTVFRAISKKK-------VGHWTAMIVGLGMHGMATQALDLFNKMC 409
+ + A + ++ + + A+++G G + + + +
Sbjct: 133 FFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVK 192
Query: 410 RMGMKPTAITFIGVLNACSHAG-LVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGY 468
G+ P +++ L R M + G++ L+ R
Sbjct: 193 DAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQM-SQEGLKLQALFTAVLLSEEDRATV 251
Query: 469 LEEAKSTIESMPMRP 483
L+ + + P
Sbjct: 252 LKAVHKVKPTFSLPP 266
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291 | Back alignment and structure |
|---|
Score = 44.3 bits (104), Expect = 8e-05
Identities = 26/162 (16%), Positives = 56/162 (34%), Gaps = 12/162 (7%)
Query: 174 DLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDRDLFSWTCLVDGFSKCG 233
+L R + ++D + Y + A++ + L V K
Sbjct: 87 ELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQG--DSLECMAMTVQILLKLD 144
Query: 234 KVEIAREIFYRM----PNRNLVSWN-AMINGYMKAGDVDSACELFDDMEIR---DLITWN 285
++++AR+ +M + L A ++ + A +F +M + L+ N
Sbjct: 145 RLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLN 204
Query: 286 SMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVA 327
A + GR+ A +L+ L D + L ++
Sbjct: 205 GQAACHMAQGRWEAAEGVLQEALDKD--SGHPETLINLVVLS 244
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 689 | |||
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.95 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.95 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.94 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.94 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.91 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.91 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.9 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.89 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.88 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.85 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.81 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.81 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.81 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.8 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.78 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.77 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.77 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.77 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.76 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.76 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.76 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.74 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.73 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.73 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.72 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.7 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.7 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.69 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.69 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.68 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.64 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.63 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.63 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.63 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.6 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.59 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.57 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.53 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.52 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.52 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.5 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.47 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.47 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.47 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.47 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.46 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.45 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.44 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.44 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.43 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.42 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.42 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.42 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.41 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.4 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.4 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.4 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.39 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.38 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.37 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.34 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.34 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.32 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.32 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.29 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.29 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.28 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.27 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.27 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.24 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.23 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.22 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.22 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.2 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.19 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.18 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.17 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.17 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.12 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.12 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.09 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.07 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.06 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.02 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.01 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 98.96 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 98.95 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 98.94 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 98.94 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 98.91 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 98.9 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 98.89 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 98.89 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 98.89 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 98.87 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 98.86 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 98.81 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 98.79 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 98.76 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.75 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 98.74 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.74 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.69 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.69 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.67 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.67 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 98.66 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 98.66 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.65 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.64 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.63 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 98.62 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 98.61 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.61 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 98.57 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 98.56 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 98.56 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.56 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.54 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.52 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.52 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.51 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 98.5 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.5 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 98.5 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.49 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.47 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.47 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.44 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.44 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 98.42 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.37 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.37 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.37 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.35 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.34 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.32 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.31 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.31 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.31 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.31 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.28 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.27 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.26 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.25 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.24 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.24 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.24 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.23 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.23 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.21 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.2 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.18 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.18 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.18 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.15 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 98.14 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 98.13 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.12 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.07 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.04 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 98.04 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 98.04 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.02 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 98.01 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 98.01 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 98.01 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.01 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.01 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.0 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.0 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.0 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 97.99 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 97.99 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 97.97 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 97.95 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 97.94 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 97.93 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 97.92 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 97.91 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 97.91 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 97.88 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 97.87 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 97.87 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 97.87 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 97.86 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 97.84 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 97.83 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 97.81 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 97.79 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 97.75 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 97.72 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 97.71 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 97.69 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 97.69 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 97.59 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 97.5 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 97.49 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 97.48 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 97.42 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 97.37 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 97.28 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 97.24 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 97.19 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 97.17 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 97.06 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 97.05 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 97.04 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 97.03 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 97.02 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 97.0 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 96.97 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 96.92 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 96.75 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 96.69 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 96.68 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 96.65 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 96.65 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 96.37 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 95.84 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 95.77 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 95.65 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 95.46 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 95.26 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 95.22 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 94.95 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 94.74 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 94.59 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 94.06 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 93.53 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 92.77 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 92.37 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 92.29 | |
| 3ltj_A | 201 | Alpharep-4; protein engineering, heat-like repeat, | 92.2 | |
| 1qsa_A | 618 | Protein (soluble lytic transglycosylase SLT70); al | 91.62 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 91.46 | |
| 3ltm_A | 211 | Alpha-REP4; protein engineering, heat-like repeat, | 90.84 | |
| 3ltm_A | 211 | Alpha-REP4; protein engineering, heat-like repeat, | 89.45 | |
| 3ltj_A | 201 | Alpharep-4; protein engineering, heat-like repeat, | 88.67 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 88.27 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 88.02 | |
| 2p58_C | 116 | Putative type III secretion protein YSCG; type III | 87.08 | |
| 2p58_C | 116 | Putative type III secretion protein YSCG; type III | 87.07 | |
| 2uwj_G | 115 | Type III export protein PSCG; virulence, chaperone | 86.56 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 85.77 | |
| 2wpv_A | 312 | GET4, UPF0363 protein YOR164C; golgi-ER traffickin | 84.86 | |
| 2uwj_G | 115 | Type III export protein PSCG; virulence, chaperone | 84.59 | |
| 3txn_A | 394 | 26S proteasome regulatory complex subunit P42B; PC | 84.22 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 84.13 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 83.9 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 83.64 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 83.47 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 82.89 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 82.6 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 82.31 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 82.0 | |
| 3lpz_A | 336 | GET4 (YOR164C homolog); protein targeting, tail-an | 81.81 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 81.56 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 80.96 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 80.44 |
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-43 Score=392.82 Aligned_cols=506 Identities=10% Similarity=-0.007 Sum_probs=402.4
Q ss_pred hcCCCchHHHHHHHHHHHhCCCCCchHHHHHhhcccccCCCCHHHHHHHHhcccCCCChhhHHHHHHHHHhCCCchHHHH
Q 036237 29 KFSSTHKETQQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALT 108 (689)
Q Consensus 29 ~~c~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~ 108 (689)
..|..+......|......++...+.+ .+...+.+ .|.+..++..|+.++ .+++..|+.++..|.+.|++++|+.
T Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~--~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~ 105 (597)
T 2xpi_A 31 MTPPSMGALNANNSNSQLSTLTISPMT--YLANNTST--DGSFLKERNAQNTDS-LSREDYLRLWRHDALMQQQYKCAAF 105 (597)
T ss_dssp --------------CTTSCGGGGCGGG--GGC------------------------CHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred cCCccHHHHhhccccccccceeechhh--hhcccccc--cCccCCCCCccccch-HHHHHHHHHHHHHHHHccCchHHHH
Confidence 334444444555554444443333222 22334566 788899999999998 8999999999999999999999999
Q ss_pred HHHHhHhCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhhCCCC--
Q 036237 109 LFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDK-- 186 (689)
Q Consensus 109 ~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-- 186 (689)
+|++|.. ..||..++..++.+|.+.|++++|..+|+.+... +++..+++.++.+|.++|++++|.++|+++...
T Consensus 106 ~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 181 (597)
T 2xpi_A 106 VGEKVLD--ITGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLY--NRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRK 181 (597)
T ss_dssp HHHHHHH--HHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG--GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC-
T ss_pred HHHHHHh--hCCCchHHHHHHHHHHHcCcHHHHHHHHHHHhcc--ccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccc
Confidence 9999985 4678899999999999999999999999988654 688999999999999999999999999965433
Q ss_pred -----------------CeehHHHHHHHHHhCCChHHHHHHHhhCCC--C-CcchHHHHHHHHHhCCChHHHHH--H-Hh
Q 036237 187 -----------------DLVSWNCLIDGYVKKGEVEVAMKLFDEMPD--R-DLFSWTCLVDGFSKCGKVEIARE--I-FY 243 (689)
Q Consensus 187 -----------------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~-d~~~~~~li~~~~~~g~~~~A~~--~-~~ 243 (689)
+..+|+.++.+|.+.|++++|+++|++|.+ | +...+..+...+...+..+.+.. + +.
T Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~ 261 (597)
T 2xpi_A 182 DEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYS 261 (597)
T ss_dssp ---------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCSCHHHHHHHHHHSCTH
T ss_pred cccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchhhHHHHHHHHhhcccchhHHHHHHhcCCc
Confidence 378999999999999999999999999976 3 33445555544443333222211 1 22
Q ss_pred hcCcCC----cchHHHHHHHHHhcCCHHHHHHHHHhcCC--CChHHHHHHHHHHHHcCChHHHHHHHHHhccCCCCcChh
Q 036237 244 RMPNRN----LVSWNAMINGYMKAGDVDSACELFDDMEI--RDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDA 317 (689)
Q Consensus 244 ~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 317 (689)
.+...+ ..+|+.++.+|.+.|++++|.++|+++.. +++.+|+.++.+|.+.|++++|+++|+++.+.+ +.+..
T Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~ 340 (597)
T 2xpi_A 262 TYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEID-PYNLD 340 (597)
T ss_dssp HHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCCT
T ss_pred ccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC-cccHH
Confidence 222222 44566778899999999999999999987 799999999999999999999999999998765 34778
Q ss_pred hHHHHHHHHHcccchhhHHHHHHHHHHhCCccchhHHhHHHhhHHhcCCHHHHHHHHHhcCC---CChhhHHHHHHHHHH
Q 036237 318 TLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISK---KKVGHWTAMIVGLGM 394 (689)
Q Consensus 318 t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~ 394 (689)
++..++.++...|++++|..++..+.+.. +.+..+++.++.+|.++|++++|.++|+++.+ .+..+|+.++.+|.+
T Consensus 341 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 419 (597)
T 2xpi_A 341 VYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAI 419 (597)
T ss_dssp THHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 89999999999999999999999999664 56788999999999999999999999998753 568899999999999
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHH
Q 036237 395 HGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKS 474 (689)
Q Consensus 395 ~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 474 (689)
.|++++|+++|++|.+.+ +++..++..++.+|.+.|++++|.++|+.+.+. .+.+..+|+.++.+|.+.|++++|.+
T Consensus 420 ~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~ 496 (597)
T 2xpi_A 420 EGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYAL--FQYDPLLLNELGVVAFNKSDMQTAIN 496 (597)
T ss_dssp HTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhCCHHHHHH
Confidence 999999999999999853 447789999999999999999999999999853 33468899999999999999999999
Q ss_pred HHHhC-------CCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCcchHHHHHHHH
Q 036237 475 TIESM-------PMRPN--FVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMM 545 (689)
Q Consensus 475 ~~~~~-------~~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~~~~~g~~~~A~~~~~~m 545 (689)
+|+++ +..|+ ..+|..++.+|.+.|++++|+..++++++++|+++.+|..++.+|.+.|++++|.++++++
T Consensus 497 ~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 576 (597)
T 2xpi_A 497 HFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHES 576 (597)
T ss_dssp HHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 99987 44777 7899999999999999999999999999999999999999999999999999999999999
Q ss_pred HhC
Q 036237 546 KKR 548 (689)
Q Consensus 546 ~~~ 548 (689)
.+.
T Consensus 577 l~~ 579 (597)
T 2xpi_A 577 LAI 579 (597)
T ss_dssp HHH
T ss_pred Hhc
Confidence 874
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-38 Score=356.14 Aligned_cols=474 Identities=7% Similarity=-0.020 Sum_probs=404.9
Q ss_pred CCchHHHHHhhcccccCCCCHHHHHHHHhcccC-CCChhhHHHHHHHHHhCCCchHHHHHHHHhHhCCCCCCcccHHHHH
Q 036237 51 YHSGISSRLLSLYVDPHINNLHYARSIFDRILQ-HPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVI 129 (689)
Q Consensus 51 ~~~~~~~~ll~~~~~~~~g~~~~A~~~f~~~~~-~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll 129 (689)
+++..++.++..|.+ .|++++|..+|+++.. .|+..+|+.++.+|.+.|++++|..+|+++... +++..+++.++
T Consensus 82 ~~~~~~~~~~~~~~~--~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~ 157 (597)
T 2xpi_A 82 SREDYLRLWRHDALM--QQQYKCAAFVGEKVLDITGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLY--NRSSACRYLAA 157 (597)
T ss_dssp CHHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG--GTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH--ccCchHHHHHHHHHHhhCCCchHHHHHHHHHHHcCcHHHHHHHHHHHhcc--ccchhHHHHHH
Confidence 578889999999999 9999999999999864 688899999999999999999999999998653 67889999999
Q ss_pred HHHHhcCChHHHHHHHHHHHHh---------------CCCCchhHHHHHHHHHHhcCChHHHHHHHhhCCCC---CeehH
Q 036237 130 KGAARLGAIKEGKQIHGLVFKL---------------GFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDK---DLVSW 191 (689)
Q Consensus 130 ~~~~~~~~~~~a~~~~~~~~~~---------------g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---~~~~~ 191 (689)
.++.+.|++++|.++|+.+... |.+++..+|+.++.+|.+.|++++|.++|++|.+. +...|
T Consensus 158 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 237 (597)
T 2xpi_A 158 FCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAF 237 (597)
T ss_dssp HHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchhhHHH
Confidence 9999999999999999853211 22346889999999999999999999999999753 33455
Q ss_pred HHHHHHHHhCCChHHHHHH---HhhCCCC----CcchHHHHHHHHHhCCChHHHHHHHhhcCc--CCcchHHHHHHHHHh
Q 036237 192 NCLIDGYVKKGEVEVAMKL---FDEMPDR----DLFSWTCLVDGFSKCGKVEIAREIFYRMPN--RNLVSWNAMINGYMK 262 (689)
Q Consensus 192 ~~li~~~~~~g~~~~A~~~---~~~m~~~----d~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~ 262 (689)
..+...+...+..+.+... +..+... +..+|+.++..|.+.|++++|.++|+++.+ ++..+++.++.+|.+
T Consensus 238 ~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~ 317 (597)
T 2xpi_A 238 DQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFV 317 (597)
T ss_dssp HHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHHH
T ss_pred HHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHHHH
Confidence 5555544443332222111 2222221 334567778889999999999999999988 789999999999999
Q ss_pred cCCHHHHHHHHHhcCC---CChHHHHHHHHHHHHcCChHHHHHHHHHhccCCCCcChhhHHHHHHHHHcccchhhHHHHH
Q 036237 263 AGDVDSACELFDDMEI---RDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMH 339 (689)
Q Consensus 263 ~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~ 339 (689)
.|++++|.++|+++.. .+..+|+.++.+|.+.|++++|.++|+++.+.. +.+..++..+...+.+.|++++|.+++
T Consensus 318 ~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~ 396 (597)
T 2xpi_A 318 RSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRYF 396 (597)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHHH
Confidence 9999999999999863 377899999999999999999999999998542 456788899999999999999999999
Q ss_pred HHHHHhCCccchhHHhHHHhhHHhcCCHHHHHHHHHhcCC---CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC
Q 036237 340 SYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISK---KKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPT 416 (689)
Q Consensus 340 ~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~ 416 (689)
..+.+.. +.+..+++.++.+|.+.|++++|.++|+++.. .+..+|+.++.+|.+.|++++|+++|++|.+.. +.+
T Consensus 397 ~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~ 474 (597)
T 2xpi_A 397 SKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALF-QYD 474 (597)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CCC
T ss_pred HHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCC
Confidence 9998864 34678999999999999999999999998764 477899999999999999999999999999853 346
Q ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHhHHhc---CCCCC--hhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHH
Q 036237 417 AITFIGVLNACSHAGLVNDGRRYFNMMINDY---GIEPT--IEHYGCLVDILCRTGYLEEAKSTIESM-PMRP-NFVIWM 489 (689)
Q Consensus 417 ~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~---~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~ 489 (689)
..+|..++..+.+.|++++|.++|+++.+.. +..|+ ..+|..++.+|.+.|++++|.+.++++ ...| +..+|.
T Consensus 475 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 554 (597)
T 2xpi_A 475 PLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHT 554 (597)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHH
T ss_pred hHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHH
Confidence 7899999999999999999999999998532 56787 789999999999999999999999987 2334 789999
Q ss_pred HHHHHHHhcCChHHHHHHHHHHhhcCCCCchhHHHHHHHHHh
Q 036237 490 SLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAA 531 (689)
Q Consensus 490 ~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~~~~ 531 (689)
.+..+|...|++++|...++++++++|+++..+..|+++|..
T Consensus 555 ~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~ 596 (597)
T 2xpi_A 555 AIALVYLHKKIPGLAITHLHESLAISPNEIMASDLLKRALEE 596 (597)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTC-
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999988753
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.95 E-value=1.6e-25 Score=235.16 Aligned_cols=367 Identities=14% Similarity=0.132 Sum_probs=242.7
Q ss_pred HHHHhCCCchHHHHHHHHhHhCCCCCCc-ccHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCh
Q 036237 95 KCYVFNQRSHEALTLFCDLLDRFLLPDN-FTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEI 173 (689)
Q Consensus 95 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~ 173 (689)
..+.+.|++++|.+.|.++.+. .|+. ..+..+...+...|++++|...++.+++.. +.+..++..+...|.+.|++
T Consensus 7 ~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~~ 83 (388)
T 1w3b_A 7 HREYQAGDFEAAERHCMQLWRQ--EPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQL 83 (388)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCH
Confidence 3455566666666666665553 2333 233334444455566666666666655543 44555566666666666666
Q ss_pred HHHHHHHhhCCC--C-CeehHHHHHHHHHhCCChHHHHHHHhhCCC--CCcchHHHHHHHHHhCCChHHHHHHHhhcCcC
Q 036237 174 DLGRRVFDAMDD--K-DLVSWNCLIDGYVKKGEVEVAMKLFDEMPD--RDLFSWTCLVDGFSKCGKVEIAREIFYRMPNR 248 (689)
Q Consensus 174 ~~A~~~~~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 248 (689)
++|...|+++.+ | +..+|..+..++.+.|++++|+..|+++.+ |+
T Consensus 84 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~------------------------------ 133 (388)
T 1w3b_A 84 QEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPD------------------------------ 133 (388)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTT------------------------------
T ss_pred HHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------------------------------
Confidence 666666555431 2 222344444444444444444444444322 11
Q ss_pred CcchHHHHHHHHHhcCCHHHHHHHHHhcC---CCChHHHHHHHHHHHHcCChHHHHHHHHHhccCCCCcChhhHHHHHHH
Q 036237 249 NLVSWNAMINGYMKAGDVDSACELFDDME---IRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSA 325 (689)
Q Consensus 249 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a 325 (689)
....+..+...|...|++++|.+.|+++. ..+..+|+.+...|...|++++|+..|+++.+.+ |+
T Consensus 134 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~---------- 201 (388)
T 1w3b_A 134 LYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD--PN---------- 201 (388)
T ss_dssp CTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC--TT----------
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CC----------
Confidence 12233334444444444444444444433 1245566666666666666666666666665422 22
Q ss_pred HHcccchhhHHHHHHHHHHhCCccchhHHhHHHhhHHhcCCHHHHHHHHHhcCC---CChhhHHHHHHHHHHcCCHHHHH
Q 036237 326 VAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISK---KKVGHWTAMIVGLGMHGMATQAL 402 (689)
Q Consensus 326 ~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~ 402 (689)
+...+..+...+...|++++|...|++... .+..+|..++..|.+.|++++|+
T Consensus 202 ------------------------~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 257 (388)
T 1w3b_A 202 ------------------------FLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAI 257 (388)
T ss_dssp ------------------------CHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred ------------------------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHH
Confidence 233445555666666666666666665542 35678888899999999999999
Q ss_pred HHHHHHHHCCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-C
Q 036237 403 DLFNKMCRMGMKPT-AITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESM-P 480 (689)
Q Consensus 403 ~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~ 480 (689)
+.|+++.+. .|+ ..++..+..++...|++++|...|+.+.+. .+++...+..+...|.+.|++++|.+.++++ .
T Consensus 258 ~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 333 (388)
T 1w3b_A 258 DTYRRAIEL--QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRL--CPTHADSLNNLANIKREQGNIEEAVRLYRKALE 333 (388)
T ss_dssp HHHHHHHHT--CSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTT
T ss_pred HHHHHHHhh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 999999884 454 568888999999999999999999999853 3456888999999999999999999999986 3
Q ss_pred CCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCC
Q 036237 481 MRP-NFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQ 534 (689)
Q Consensus 481 ~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~~~~~g~ 534 (689)
..| +..+|..+...+.+.|++++|...+++++++.|+++.+|..++.+|...|+
T Consensus 334 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 334 VFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp SCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHhHHHHHHHccC
Confidence 445 577999999999999999999999999999999999999999999887764
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.95 E-value=2.2e-27 Score=254.47 Aligned_cols=184 Identities=11% Similarity=0.100 Sum_probs=169.6
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHhccCCCCcChhhHHHHHHHHHccc---------chhhHHHHHHHHHHhCCccchh
Q 036237 282 ITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLA---------VLNKGRWMHSYIVKNGFVVDGV 352 (689)
Q Consensus 282 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~---------~~~~a~~i~~~~~~~g~~~~~~ 352 (689)
..++.+|.+|++.|+.++|+++|++|.+.|++||..||+++|.+|+..+ .++.|.++|+.|.+.|+.||..
T Consensus 27 ~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~ 106 (501)
T 4g26_A 27 ALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEA 106 (501)
T ss_dssp HHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHH
Confidence 4688889999999999999999999999999999999999999998654 4678999999999999999999
Q ss_pred HHhHHHhhHHhcCCHHHHHHHHHhcCC----CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh
Q 036237 353 LGTLLIQMYSKCGSIESALTVFRAISK----KKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACS 428 (689)
Q Consensus 353 ~~~~li~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~ 428 (689)
+|++||.+|++.|++++|.++|++|.. ||..+||+||.+|++.|+.++|.++|++|.+.|+.||..||++||.+|+
T Consensus 107 tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~ 186 (501)
T 4g26_A 107 TFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSM 186 (501)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHh
Confidence 999999999999999999999999974 7899999999999999999999999999999999999999999999999
Q ss_pred ccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhc
Q 036237 429 HAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRT 466 (689)
Q Consensus 429 ~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~ 466 (689)
+.|++++|.++|++|. +.+..|+..+|+.+++.+...
T Consensus 187 ~~g~~d~A~~ll~~Mr-~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 187 DTKNADKVYKTLQRLR-DLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HTTCHHHHHHHHHHHH-HHTSSBCHHHHHHHHHHHHSH
T ss_pred hCCCHHHHHHHHHHHH-HhCCCcCHHHHHHHHHHHhcC
Confidence 9999999999999998 459999999999999988764
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.94 E-value=3.7e-24 Score=224.80 Aligned_cols=344 Identities=13% Similarity=0.095 Sum_probs=279.2
Q ss_pred HHHHhCCChHHHHHHHhhCCC--C-CcchHHHHHHHHHhCCChHHHHHHHhhcCc---CCcchHHHHHHHHHhcCCHHHH
Q 036237 196 DGYVKKGEVEVAMKLFDEMPD--R-DLFSWTCLVDGFSKCGKVEIAREIFYRMPN---RNLVSWNAMINGYMKAGDVDSA 269 (689)
Q Consensus 196 ~~~~~~g~~~~A~~~~~~m~~--~-d~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A 269 (689)
..+.+.|++++|++.+.++.+ | +...+..+...+...|++++|...++...+ .+..+|..+...|.+.|++++|
T Consensus 7 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A 86 (388)
T 1w3b_A 7 HREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEA 86 (388)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHH
Confidence 344555666666666655532 3 233455555566667777777776666554 2355677777778888888888
Q ss_pred HHHHHhcCC---CChHHHHHHHHHHHHcCChHHHHHHHHHhccCCCCcChh-hHHHHHHHHHcccchhhHHHHHHHHHHh
Q 036237 270 CELFDDMEI---RDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDA-TLVSALSAVAGLAVLNKGRWMHSYIVKN 345 (689)
Q Consensus 270 ~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~~~~~~a~~i~~~~~~~ 345 (689)
...|+++.. .+..+|..+..++.+.|++++|++.|+++.+. .|+.. .+..+...+...|++++|...+..+.+.
T Consensus 87 ~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 164 (388)
T 1w3b_A 87 IEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQY--NPDLYCVRSDLGNLLKALGRLEEAKACYLKAIET 164 (388)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHH--CTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 888777652 35567888889999999999999999888864 45544 4455666778889999999999988887
Q ss_pred CCccchhHHhHHHhhHHhcCCHHHHHHHHHhcCC---CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHH
Q 036237 346 GFVVDGVLGTLLIQMYSKCGSIESALTVFRAISK---KKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPT-AITFI 421 (689)
Q Consensus 346 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~ 421 (689)
. +.+..++..+...|.+.|++++|.+.|+++.. .+...|..+...+...|++++|+..|++... ..|+ ..++.
T Consensus 165 ~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~ 241 (388)
T 1w3b_A 165 Q-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALS--LSPNHAVVHG 241 (388)
T ss_dssp C-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHH--HCTTCHHHHH
T ss_pred C-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCcCCHHHHH
Confidence 5 34577888999999999999999999998864 4567899999999999999999999999987 4565 66888
Q ss_pred HHHHHHhccCcHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhc
Q 036237 422 GVLNACSHAGLVNDGRRYFNMMINDYGIEP-TIEHYGCLVDILCRTGYLEEAKSTIESMP--MRPNFVIWMSLLSGARNH 498 (689)
Q Consensus 422 ~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~ll~~~~~~ 498 (689)
.+..++...|++++|...|+.+.+ ..| +...|..++..|.+.|++++|.+.++++- .+++..+|..+...+...
T Consensus 242 ~l~~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 318 (388)
T 1w3b_A 242 NLACVYYEQGLIDLAIDTYRRAIE---LQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQ 318 (388)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH---TCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHh---hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHc
Confidence 999999999999999999999984 345 47889999999999999999999999872 345788999999999999
Q ss_pred CChHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCcchHHHHHHHHHh
Q 036237 499 GNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKK 547 (689)
Q Consensus 499 g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~~~~~g~~~~A~~~~~~m~~ 547 (689)
|++++|+..+++++++.|+++.++..++.+|.+.|++++|...++++.+
T Consensus 319 g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 367 (388)
T 1w3b_A 319 GNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR 367 (388)
T ss_dssp TCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999986
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.94 E-value=1.2e-25 Score=240.88 Aligned_cols=200 Identities=11% Similarity=0.095 Sum_probs=171.3
Q ss_pred HHHHHHHHHhccCCCCcCh-hhHHHHHHHHHcccchhhHHHHHHHHHHhCCccchhHHhHHHhhHHhcCC---------H
Q 036237 298 MEALELLETMLIGDVLPND-ATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGS---------I 367 (689)
Q Consensus 298 ~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~---------~ 367 (689)
..+..+.+++.+.++.+.+ ..++.+|.+|++.|++++|.++|+.|.+.|+.||..+||+||.+|++.+. +
T Consensus 7 s~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l 86 (501)
T 4g26_A 7 SPSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGL 86 (501)
T ss_dssp -----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHH
T ss_pred chHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchH
Confidence 4456677788777776544 45788999999999999999999999999999999999999999987665 7
Q ss_pred HHHHHHHHhcCC----CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHh
Q 036237 368 ESALTVFRAISK----KKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMM 443 (689)
Q Consensus 368 ~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~ 443 (689)
++|.++|++|.. ||..+||+||.+|++.|++++|+++|++|.+.|+.||..||+.+|.+|++.|++++|.++|++|
T Consensus 87 ~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M 166 (501)
T 4g26_A 87 SRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHM 166 (501)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHH
Confidence 899999999974 7999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC---CCCCCHHHHHHHHHHHHhc
Q 036237 444 INDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESM---PMRPNFVIWMSLLSGARNH 498 (689)
Q Consensus 444 ~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~---~~~p~~~~~~~ll~~~~~~ 498 (689)
.+ .|+.||..+|++||++|++.|++++|.+++++| ...|+..||+.++..++..
T Consensus 167 ~~-~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 167 VE-SEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HH-TTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred Hh-cCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 94 599999999999999999999999999999999 5789999999999988764
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.91 E-value=4e-22 Score=218.75 Aligned_cols=422 Identities=10% Similarity=0.013 Sum_probs=253.6
Q ss_pred ChhhHHHHHHHHHhCCCchHHHHHHHHhHhCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHH
Q 036237 86 SLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVS 165 (689)
Q Consensus 86 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 165 (689)
....|..+...+.+.|++++|++.|+++.+.. +.+..++..+..++...|++++|.+.++.+++.+ +.+...+..+..
T Consensus 24 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~ 101 (537)
T 3fp2_A 24 YAVQLKNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRAS 101 (537)
T ss_dssp HHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHH
Confidence 34567888889999999999999999999864 3366788888899999999999999999999887 567888999999
Q ss_pred HHHhcCChHHHHHHHhhCCCCCeehHHHHHHHHHhCCChHHHHHHHhhCCCC------CcchHHHHHHHHHhCCChHHHH
Q 036237 166 MYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDR------DLFSWTCLVDGFSKCGKVEIAR 239 (689)
Q Consensus 166 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------d~~~~~~li~~~~~~g~~~~A~ 239 (689)
.|.+.|++++|...|+.+. .++...+..+..+...+...+|...++.+... ........+..+....+.+.+.
T Consensus 102 ~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (537)
T 3fp2_A 102 ANESLGNFTDAMFDLSVLS-LNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEV 180 (537)
T ss_dssp HHHHHTCHHHHHHHHHHHC------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHh-cCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHH
Confidence 9999999999999997443 33333444455666777778888888888652 2223344555566677777777
Q ss_pred HHHhhcCcCCcc---hHHHHHHHHHhc--------CCHHHHHHHHHhcCCC---C-------hHHHHHHHHHHHHcCChH
Q 036237 240 EIFYRMPNRNLV---SWNAMINGYMKA--------GDVDSACELFDDMEIR---D-------LITWNSMIAGYELNGRFM 298 (689)
Q Consensus 240 ~~~~~~~~~~~~---~~~~li~~~~~~--------g~~~~A~~~~~~~~~~---~-------~~~~~~li~~~~~~g~~~ 298 (689)
..+......+.. ....+...+... |++++|..+|+++.+. + ..+|..+...+...|+++
T Consensus 181 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~ 260 (537)
T 3fp2_A 181 SSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLL 260 (537)
T ss_dssp HTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHH
Confidence 766666554433 333333333222 3555666666555432 1 113444445555555666
Q ss_pred HHHHHHHHhccCCCCcChhhHHHHHHHHHcccchhhHHHHHHHHHHhCCccchhHHhHHHhhHHhcCCHHHHHHHHHhcC
Q 036237 299 EALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAIS 378 (689)
Q Consensus 299 ~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 378 (689)
+|+..|+++... .|+...+..+...+...|+++.|...+..+.+..
T Consensus 261 ~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-------------------------------- 306 (537)
T 3fp2_A 261 DAQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-------------------------------- 306 (537)
T ss_dssp HHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC--------------------------------
T ss_pred HHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC--------------------------------
Confidence 666666555542 2333344444444444444444444444444332
Q ss_pred CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHH
Q 036237 379 KKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGC 458 (689)
Q Consensus 379 ~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~ 458 (689)
..+..+|..+...|...|++++|++.|++..+.. +.+...+..+...+...|++++|..+++.+.+. .+.+...+..
T Consensus 307 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~ 383 (537)
T 3fp2_A 307 PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLK--FPTLPEVPTF 383 (537)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTHHHHH
T ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHH
Confidence 1234455555555666666666666666655532 112345555555566666666666666665532 1223445555
Q ss_pred HHHHHHhcCCHHHHHHHHHhC----C----CCCCHHHHHHHHHHHHhc----------CChHHHHHHHHHHhhcCCCCch
Q 036237 459 LVDILCRTGYLEEAKSTIESM----P----MRPNFVIWMSLLSGARNH----------GNKDIGEYAANNLIKVAPDTIG 520 (689)
Q Consensus 459 li~~~~~~g~~~~A~~~~~~~----~----~~p~~~~~~~ll~~~~~~----------g~~~~a~~~~~~~~~~~p~~~~ 520 (689)
+...|.+.|++++|...++++ + .......+..+...+... |++++|+..++++++..|+++.
T Consensus 384 l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~ 463 (537)
T 3fp2_A 384 FAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQ 463 (537)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHH
Confidence 666666666666666666554 0 111222233444455555 6677777777777777776666
Q ss_pred hHHHHHHHHHhcCCcchHHHHHHHHHh
Q 036237 521 CYVVLSNIYAAAGQWDKVSEVREMMKK 547 (689)
Q Consensus 521 ~~~~L~~~~~~~g~~~~A~~~~~~m~~ 547 (689)
++..++.+|.+.|++++|.+.+++..+
T Consensus 464 ~~~~l~~~~~~~g~~~~A~~~~~~al~ 490 (537)
T 3fp2_A 464 AKIGLAQLKLQMEKIDEAIELFEDSAI 490 (537)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 777777777777777777777766655
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.91 E-value=5e-22 Score=216.51 Aligned_cols=431 Identities=11% Similarity=-0.043 Sum_probs=251.3
Q ss_pred hhHHHHHHHHHhCCCchHHHHHHHHhHhCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHH
Q 036237 88 VLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMY 167 (689)
Q Consensus 88 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~ 167 (689)
..|......+.+.|++++|+..|+++.+.. ||..+|..+..++...|++++|...++.+++.+ +.+..++..+..+|
T Consensus 7 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~ 83 (514)
T 2gw1_A 7 LALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASAN 83 (514)
T ss_dssp HHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHHH
Confidence 456666777778888888888888887754 677777778888888888888888888888775 45566777888888
Q ss_pred HhcCChHHHHHHHhhCCC---CCeehHHHHHHHHHhCCChHHHHHHHhhCCC----CCcchHHHH---HHHHHhCCChHH
Q 036237 168 AKFGEIDLGRRVFDAMDD---KDLVSWNCLIDGYVKKGEVEVAMKLFDEMPD----RDLFSWTCL---VDGFSKCGKVEI 237 (689)
Q Consensus 168 ~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~d~~~~~~l---i~~~~~~g~~~~ 237 (689)
.+.|++++|...|+++.. .+......++..+........+.+.+..+.. ++...+..- ............
T Consensus 84 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (514)
T 2gw1_A 84 EGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTS 163 (514)
T ss_dssp HHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHH
T ss_pred HHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHH
Confidence 888888888888876643 2333344444444433322222222221111 000000000 000000111111
Q ss_pred HHHHHhhcCc---------C-CcchHHHHHHHHHh---cCCHHHHHHHHHhcCC----------------C-ChHHHHHH
Q 036237 238 AREIFYRMPN---------R-NLVSWNAMINGYMK---AGDVDSACELFDDMEI----------------R-DLITWNSM 287 (689)
Q Consensus 238 A~~~~~~~~~---------~-~~~~~~~li~~~~~---~g~~~~A~~~~~~~~~----------------~-~~~~~~~l 287 (689)
....+..... + +...+..+...+.. .|++++|...|+++.. + +..+|..+
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (514)
T 2gw1_A 164 MASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHT 243 (514)
T ss_dssp HHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHH
Confidence 1111111110 1 12223333333333 5666666666665443 1 34566667
Q ss_pred HHHHHHcCChHHHHHHHHHhccCCCCcChhhHHHHHHHHHcccchhhHHHHHHHHHHhCCccchhHHhHHHhhHHhcCCH
Q 036237 288 IAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSI 367 (689)
Q Consensus 288 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~ 367 (689)
...+...|++++|+..|+++.... |+...+..+...+...|++++|...+..+.+.. +.+..++..+...|...|++
T Consensus 244 ~~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~ 320 (514)
T 2gw1_A 244 GIFKFLKNDPLGAHEDIKKAIELF--PRVNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQNY 320 (514)
T ss_dssp HHHHHHSSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTTCT
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhC--ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhCCH
Confidence 777777777777777777776543 335556666666777777777777777666553 23455666666777777777
Q ss_pred HHHHHHHHhcCC---CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhH
Q 036237 368 ESALTVFRAISK---KKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMI 444 (689)
Q Consensus 368 ~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~ 444 (689)
++|...|+++.. .+...|..+...|...|++++|+..|+++.+.. +.+..++..+...+...|++++|...++.+.
T Consensus 321 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~ 399 (514)
T 2gw1_A 321 DQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYDLAI 399 (514)
T ss_dssp THHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 777777766542 345566666777777777777777777766532 2234456666666777777777777776665
Q ss_pred HhcCCCCC----hhHHHHHHHHHHh---cCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcC
Q 036237 445 NDYGIEPT----IEHYGCLVDILCR---TGYLEEAKSTIESM-PMR-PNFVIWMSLLSGARNHGNKDIGEYAANNLIKVA 515 (689)
Q Consensus 445 ~~~~~~p~----~~~~~~li~~~~~---~g~~~~A~~~~~~~-~~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 515 (689)
....-.++ ...+..+...|.+ .|++++|...++++ ... .+..+|..+...+...|++++|...+++++++.
T Consensus 400 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 479 (514)
T 2gw1_A 400 ELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLA 479 (514)
T ss_dssp HHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhc
Confidence 42222222 2366667777777 77777777776664 122 245566667777777777777777777777777
Q ss_pred CCCchhHHHH
Q 036237 516 PDTIGCYVVL 525 (689)
Q Consensus 516 p~~~~~~~~L 525 (689)
|+++..+..+
T Consensus 480 ~~~~~~~~~~ 489 (514)
T 2gw1_A 480 RTMEEKLQAI 489 (514)
T ss_dssp SSHHHHHHHH
T ss_pred cccHHHHHHH
Confidence 7665554444
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.90 E-value=7e-22 Score=215.36 Aligned_cols=419 Identities=10% Similarity=-0.074 Sum_probs=317.0
Q ss_pred ccHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhhCCC---CCeehHHHHHHHHH
Q 036237 123 FTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDD---KDLVSWNCLIDGYV 199 (689)
Q Consensus 123 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~ 199 (689)
..+......+...|++++|...|..+++.. |+..++..+..+|.+.|++++|...|+++.+ .+..+|..+..+|.
T Consensus 7 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 84 (514)
T 2gw1_A 7 LALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASANE 84 (514)
T ss_dssp HHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHHHH
Confidence 345666777889999999999999999986 6889999999999999999999999997753 35568889999999
Q ss_pred hCCChHHHHHHHhhCCC---CCcchHHHHHHHHHhCCChHHHHHHHhhcCcC----CcchHHH---HHHHHHhcCCHHHH
Q 036237 200 KKGEVEVAMKLFDEMPD---RDLFSWTCLVDGFSKCGKVEIAREIFYRMPNR----NLVSWNA---MINGYMKAGDVDSA 269 (689)
Q Consensus 200 ~~g~~~~A~~~~~~m~~---~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~---li~~~~~~g~~~~A 269 (689)
+.|++++|+..|+++.. ++......++..+........+.+.+..+... +...... .............+
T Consensus 85 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (514)
T 2gw1_A 85 GLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSM 164 (514)
T ss_dssp HTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHH
T ss_pred HHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHH
Confidence 99999999999988754 23444445555444433333333333222110 0000000 00001111111112
Q ss_pred HHHHHhcC---------CC-ChHHHHHHHHHHHH---cCChHHHHHHHHHhcc-----CCCCc--------ChhhHHHHH
Q 036237 270 CELFDDME---------IR-DLITWNSMIAGYEL---NGRFMEALELLETMLI-----GDVLP--------NDATLVSAL 323 (689)
Q Consensus 270 ~~~~~~~~---------~~-~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~-----~g~~p--------~~~t~~~ll 323 (689)
...+.... .+ +...|......+.. .|++++|+.+|+++.. ..-.| +..++..+.
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (514)
T 2gw1_A 165 ASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTG 244 (514)
T ss_dssp HHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHH
T ss_pred HHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHH
Confidence 22222221 11 24455555555554 8999999999999987 31122 345667778
Q ss_pred HHHHcccchhhHHHHHHHHHHhCCccchhHHhHHHhhHHhcCCHHHHHHHHHhcCC---CChhhHHHHHHHHHHcCCHHH
Q 036237 324 SAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISK---KKVGHWTAMIVGLGMHGMATQ 400 (689)
Q Consensus 324 ~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~ 400 (689)
..+...|++++|...+..+.+.... ..++..+...|...|++++|.+.|+++.. .+...|..+...|...|++++
T Consensus 245 ~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 322 (514)
T 2gw1_A 245 IFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQ 322 (514)
T ss_dssp HHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTTH
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHHH
Confidence 8889999999999999999998755 88889999999999999999999998765 366789999999999999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-
Q 036237 401 ALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESM- 479 (689)
Q Consensus 401 A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~- 479 (689)
|+..|++..+.. +.+...+..+...+...|++++|...++.+.+. .+.+...+..+...|.+.|++++|...++++
T Consensus 323 A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~ 399 (514)
T 2gw1_A 323 AGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRK--FPEAPEVPNFFAEILTDKNDFDKALKQYDLAI 399 (514)
T ss_dssp HHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHH--STTCSHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--cccCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 999999999853 234668888899999999999999999999853 2335788999999999999999999999886
Q ss_pred ---CCCCC----HHHHHHHHHHHHh---cCChHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCcchHHHHHHHHHhC
Q 036237 480 ---PMRPN----FVIWMSLLSGARN---HGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKR 548 (689)
Q Consensus 480 ---~~~p~----~~~~~~ll~~~~~---~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~~~~~g~~~~A~~~~~~m~~~ 548 (689)
+..++ ...|..+...+.. .|+++.|...++++++..|+++.++..++.+|.+.|++++|...+++..+.
T Consensus 400 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 478 (514)
T 2gw1_A 400 ELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADL 478 (514)
T ss_dssp HHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 22222 4589999999999 999999999999999999999999999999999999999999999998874
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.89 E-value=6.3e-21 Score=204.19 Aligned_cols=322 Identities=13% Similarity=0.080 Sum_probs=227.6
Q ss_pred CeehHHHHHHHHHhCCChHHHHHHHhhCCC---CCcchHHHHHHHHHhCCChHHHHHHHhhcCcCCcchHHHHHHHHHhc
Q 036237 187 DLVSWNCLIDGYVKKGEVEVAMKLFDEMPD---RDLFSWTCLVDGFSKCGKVEIAREIFYRMPNRNLVSWNAMINGYMKA 263 (689)
Q Consensus 187 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~ 263 (689)
+...|..+...|.+.|++++|+.+|+++.+ .+..+|..+..++...|++++|...|+++.+.+
T Consensus 25 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-------------- 90 (450)
T 2y4t_A 25 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-------------- 90 (450)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------------
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--------------
Confidence 344566666666666666666666666543 234455555555555666666655555554311
Q ss_pred CCHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHhccCCCCcCh----hhHHHH------------HHHHH
Q 036237 264 GDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPND----ATLVSA------------LSAVA 327 (689)
Q Consensus 264 g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~t~~~l------------l~a~~ 327 (689)
..+..+|..+...|.+.|++++|++.|+++... .|+. ..+..+ ...+.
T Consensus 91 --------------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 154 (450)
T 2y4t_A 91 --------------MDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKS--NPSENEEKEAQSQLIKSDEMQRLRSQALNAF 154 (450)
T ss_dssp --------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --------------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCChhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 113344445555555555555555555555442 2222 122222 33356
Q ss_pred cccchhhHHHHHHHHHHhCCccchhHHhHHHhhHHhcCCHHHHHHHHHhcCC---CChhhHHHHHHHHHHcCCHHHHHHH
Q 036237 328 GLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISK---KKVGHWTAMIVGLGMHGMATQALDL 404 (689)
Q Consensus 328 ~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l 404 (689)
..|++++|...+..+.+.. +.+..++..+..+|.+.|++++|.+.|+++.. .+..+|..++..|...|++++|+..
T Consensus 155 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 233 (450)
T 2y4t_A 155 GSGDYTAAIAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSE 233 (450)
T ss_dssp HHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 6677777777777777654 34667788888899999999999999988764 5678999999999999999999999
Q ss_pred HHHHHHCCCCCCHHH-HHHH------------HHHHhccCcHHHHHHHHHHhHHhcCCCCC-----hhHHHHHHHHHHhc
Q 036237 405 FNKMCRMGMKPTAIT-FIGV------------LNACSHAGLVNDGRRYFNMMINDYGIEPT-----IEHYGCLVDILCRT 466 (689)
Q Consensus 405 ~~~m~~~g~~p~~~t-~~~l------------l~a~~~~g~~~~a~~~~~~~~~~~~~~p~-----~~~~~~li~~~~~~ 466 (689)
|+++.. ..|+... +..+ ..+|.+.|++++|..+|+.+.. +.|+ ..+|..++.+|.+.
T Consensus 234 ~~~~~~--~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~---~~p~~~~~~~~~~~~l~~~~~~~ 308 (450)
T 2y4t_A 234 VRECLK--LDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMK---TEPSIAEYTVRSKERICHCFSKD 308 (450)
T ss_dssp HHHHHH--HCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH---HCCSSHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHH--hCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh---cCCcchHHHHHHHHHHHHHHHHC
Confidence 999987 4565443 3333 7889999999999999999985 3454 45889999999999
Q ss_pred CCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchhHHHHH------------HHHHhc
Q 036237 467 GYLEEAKSTIESM-PMRP-NFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLS------------NIYAAA 532 (689)
Q Consensus 467 g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~------------~~~~~~ 532 (689)
|++++|...++++ ...| +..+|..+..+|...|++++|...++++++++|+++.++..++ +.|...
T Consensus 309 g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~l 388 (450)
T 2y4t_A 309 EKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKIL 388 (450)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHSCCSGGGS
T ss_pred CCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhcccchhHHHHh
Confidence 9999999999986 3344 6889999999999999999999999999999999999999998 446666
Q ss_pred C-----CcchHHHHHHH
Q 036237 533 G-----QWDKVSEVREM 544 (689)
Q Consensus 533 g-----~~~~A~~~~~~ 544 (689)
| +.+++.+.+++
T Consensus 389 g~~~~~~~~~~~~~y~~ 405 (450)
T 2y4t_A 389 GVKRNAKKQEIIKAYRK 405 (450)
T ss_dssp CSSTTCCTTHHHHHHHH
T ss_pred CCCccCCHHHHHHHHHH
Confidence 6 44455555554
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.88 E-value=1.5e-20 Score=201.24 Aligned_cols=370 Identities=12% Similarity=0.021 Sum_probs=238.9
Q ss_pred HHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhhCCC---CCeehHHHHHHHHHhCCChHHHHHHHhhCCC--
Q 036237 142 KQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDD---KDLVSWNCLIDGYVKKGEVEVAMKLFDEMPD-- 216 (689)
Q Consensus 142 ~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-- 216 (689)
...+..++... +.+...+..+...|.+.|++++|..+|+++.+ .+..+|..+..+|.+.|++++|+..|+++.+
T Consensus 12 ~~~~~~~~~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 90 (450)
T 2y4t_A 12 DLGTENLYFQS-MADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK 90 (450)
T ss_dssp ------------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred ccccccccccc-HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 33444444443 56778899999999999999999999998763 4678899999999999999999999999865
Q ss_pred C-CcchHHHHHHHHHhCCChHHHHHHHhhcCcCCc------chHHHHHHHHHhcCCHHHHHHHHHhcCCCChHHHHHHHH
Q 036237 217 R-DLFSWTCLVDGFSKCGKVEIAREIFYRMPNRNL------VSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIA 289 (689)
Q Consensus 217 ~-d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~------~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~ 289 (689)
| +..++..+..++...|++++|...|+++.+.++ ..+..++..+... .+..+..
T Consensus 91 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-------------------~~~~~a~ 151 (450)
T 2y4t_A 91 MDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQ-------------------RLRSQAL 151 (450)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHH-------------------HHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHH-------------------HHHHHHH
Confidence 3 566888888889999999999999988876443 4444444431111 1122233
Q ss_pred HHHHcCChHHHHHHHHHhccCCCCcChhhHHHHHHHHHcccchhhHHHHHHHHHHhCCccchhHHhHHHhhHHhcCCHHH
Q 036237 290 GYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIES 369 (689)
Q Consensus 290 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~ 369 (689)
.+...|++++|+..|+++.... +.+...+..+...+...|++++|..++..+.+.. +.+..++..+...|.+.|++++
T Consensus 152 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~ 229 (450)
T 2y4t_A 152 NAFGSGDYTAAIAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHEL 229 (450)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHH
Confidence 3444555555555555554421 1233444455555555555555555555555442 2345556666666666666666
Q ss_pred HHHHHHhcCC---CChhhHHHH------------HHHHHHcCCHHHHHHHHHHHHHCCCCCC-----HHHHHHHHHHHhc
Q 036237 370 ALTVFRAISK---KKVGHWTAM------------IVGLGMHGMATQALDLFNKMCRMGMKPT-----AITFIGVLNACSH 429 (689)
Q Consensus 370 A~~~~~~~~~---~~~~~~~~l------------i~~~~~~g~~~~A~~l~~~m~~~g~~p~-----~~t~~~ll~a~~~ 429 (689)
|.+.|+++.. .+...|..+ +..|...|++++|+..|+++.+ ..|+ ...+..+..++.+
T Consensus 230 A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~--~~p~~~~~~~~~~~~l~~~~~~ 307 (450)
T 2y4t_A 230 SLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMK--TEPSIAEYTVRSKERICHCFSK 307 (450)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCCSSHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCcchHHHHHHHHHHHHHHHH
Confidence 6666665543 223334333 7778888888888888888877 3455 3356777778888
Q ss_pred cCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHH------------H
Q 036237 430 AGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESM-PMRP-NFVIWMSLLSG------------A 495 (689)
Q Consensus 430 ~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~------------~ 495 (689)
.|++++|...++.+... .+.+...|..+..+|...|++++|...++++ ...| +...+..+..+ |
T Consensus 308 ~g~~~~A~~~~~~a~~~--~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~y 385 (450)
T 2y4t_A 308 DEKPVEAIRVCSEVLQM--EPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYY 385 (450)
T ss_dssp TTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHSCCSG
T ss_pred CCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhcccchhHH
Confidence 88888888888887742 2234677888888888888888888888876 4445 34555555532 3
Q ss_pred HhcC-----ChHHHHHHHHH-HhhcCCCCch----------hHHHHHHHHHhcCCcch
Q 036237 496 RNHG-----NKDIGEYAANN-LIKVAPDTIG----------CYVVLSNIYAAAGQWDK 537 (689)
Q Consensus 496 ~~~g-----~~~~a~~~~~~-~~~~~p~~~~----------~~~~L~~~~~~~g~~~~ 537 (689)
...| +.+++.+.+++ +++..|++.. .+..+..+|...|+.++
T Consensus 386 ~~lg~~~~~~~~~~~~~y~~~~l~~~pd~~~~~~~~~~a~~~~~~i~~ay~~L~d~~~ 443 (450)
T 2y4t_A 386 KILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEM 443 (450)
T ss_dssp GGSCSSTTCCTTHHHHHHHHHHHHSCGGGCCSHHHHHHHHHHHHHHHHHHHHSSGGGG
T ss_pred HHhCCCccCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHHhCCHHH
Confidence 3334 56777888886 6777776432 44556666666655544
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.85 E-value=2.6e-19 Score=196.19 Aligned_cols=428 Identities=9% Similarity=-0.015 Sum_probs=294.3
Q ss_pred hHHHHHhhcccccCCCCHHHHHHHHhcccC--CCChhhHHHHHHHHHhCCCchHHHHHHHHhHhCCCCCCcccHHHHHHH
Q 036237 54 GISSRLLSLYVDPHINNLHYARSIFDRILQ--HPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKG 131 (689)
Q Consensus 54 ~~~~~ll~~~~~~~~g~~~~A~~~f~~~~~--~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~ 131 (689)
..+..+-..|.+ .|++++|...|+++.. +.+..+|..+..+|.+.|++++|++.|+++.+.+ +.+..++..+...
T Consensus 26 ~~~~~~g~~~~~--~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~ 102 (537)
T 3fp2_A 26 VQLKNRGNHFFT--AKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASA 102 (537)
T ss_dssp HHHHHHHHHHHH--TTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHH--hccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHH
Confidence 344556667777 8999999999998754 4577889999999999999999999999999864 2356778888899
Q ss_pred HHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhhCCCC------CeehHHHHHHHHHhCCChH
Q 036237 132 AARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDK------DLVSWNCLIDGYVKKGEVE 205 (689)
Q Consensus 132 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------~~~~~~~li~~~~~~g~~~ 205 (689)
+...|++++|...++ .+.. .|+. .+..+..+...+....|...++.+... ........+..+....+.+
T Consensus 103 ~~~~g~~~~A~~~~~-~~~~--~~~~--~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (537)
T 3fp2_A 103 NESLGNFTDAMFDLS-VLSL--NGDF--DGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSH 177 (537)
T ss_dssp HHHHTCHHHHHHHHH-HHC---------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHH
T ss_pred HHHcCCHHHHHHHHH-HHhc--CCCC--ChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChH
Confidence 999999999999996 4432 2322 223344555666678899999888642 2223456677788888888
Q ss_pred HHHHHHhhCCCCCcc---hHHHHHHHHHhC--------CChHHHHHHHhhcCcCCc----------chHHHHHHHHHhcC
Q 036237 206 VAMKLFDEMPDRDLF---SWTCLVDGFSKC--------GKVEIAREIFYRMPNRNL----------VSWNAMINGYMKAG 264 (689)
Q Consensus 206 ~A~~~~~~m~~~d~~---~~~~li~~~~~~--------g~~~~A~~~~~~~~~~~~----------~~~~~li~~~~~~g 264 (689)
.+...+......+.. ....+...+... |++++|..+++++.+.++ .++..+...+...|
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~ 257 (537)
T 3fp2_A 178 LEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKN 257 (537)
T ss_dssp HHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcc
Confidence 888888887765544 333343333332 478899999999887432 25777788899999
Q ss_pred CHHHHHHHHHhcC--CCChHHHHHHHHHHHHcCChHHHHHHHHHhccCCCCcChhhHHHHHHHHHcccchhhHHHHHHHH
Q 036237 265 DVDSACELFDDME--IRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYI 342 (689)
Q Consensus 265 ~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~ 342 (689)
++++|...|+... .|+...|..+...|...|++++|++.|+++.... +.+..++..+...+...|++++|...+..+
T Consensus 258 ~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 336 (537)
T 3fp2_A 258 NLLDAQVLLQESINLHPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDFQKA 336 (537)
T ss_dssp CHHHHHHHHHHHHHHCCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 9999999999876 3457889999999999999999999999998643 223444555555555555555555555555
Q ss_pred HHhCCccchhHHhHHHhhHHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 036237 343 VKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIG 422 (689)
Q Consensus 343 ~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ 422 (689)
.+.. ..+...|..+...|...|++++|++.|+++.+.. +.+...+..
T Consensus 337 ~~~~--------------------------------~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~ 383 (537)
T 3fp2_A 337 QSLN--------------------------------PENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTF 383 (537)
T ss_dssp HHHC--------------------------------TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHH
T ss_pred HHhC--------------------------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHH
Confidence 4432 1234456666666666777777777777666532 223446666
Q ss_pred HHHHHhccCcHHHHHHHHHHhHHhcCCCC----ChhHHHHHHHHHHhc----------CCHHHHHHHHHhC-CCC-CCHH
Q 036237 423 VLNACSHAGLVNDGRRYFNMMINDYGIEP----TIEHYGCLVDILCRT----------GYLEEAKSTIESM-PMR-PNFV 486 (689)
Q Consensus 423 ll~a~~~~g~~~~a~~~~~~~~~~~~~~p----~~~~~~~li~~~~~~----------g~~~~A~~~~~~~-~~~-p~~~ 486 (689)
+...+...|++++|...|+.+.+...-.+ ....+..+...|.+. |++++|...++++ ... .+..
T Consensus 384 l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~ 463 (537)
T 3fp2_A 384 FAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQ 463 (537)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHH
Confidence 66677777777777777776653211111 122244455666666 8888888888776 223 3567
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchhHH
Q 036237 487 IWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYV 523 (689)
Q Consensus 487 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 523 (689)
.|..+...+...|++++|...+++++++.|+++....
T Consensus 464 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 500 (537)
T 3fp2_A 464 AKIGLAQLKLQMEKIDEAIELFEDSAILARTMDEKLQ 500 (537)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHH
Confidence 8888999999999999999999999999998765544
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.81 E-value=1.4e-17 Score=171.73 Aligned_cols=302 Identities=13% Similarity=0.041 Sum_probs=186.5
Q ss_pred hHHHHHHHHHhCCChHHHHHHHhhcCc---CCcchHHHHHHHHHhcCCHHHHHHHHHhcCC---CChHHHHHHHHHHHHc
Q 036237 221 SWTCLVDGFSKCGKVEIAREIFYRMPN---RNLVSWNAMINGYMKAGDVDSACELFDDMEI---RDLITWNSMIAGYELN 294 (689)
Q Consensus 221 ~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~ 294 (689)
.+..+...+...|++++|...|+++.+ .++.++..+...|...|++++|...|+++.+ .+...|..+...|...
T Consensus 5 ~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 84 (359)
T 3ieg_A 5 KHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLLKQ 84 (359)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHc
Confidence 344444555555555555555555443 2244555566666666666666666665542 2556677777777777
Q ss_pred CChHHHHHHHHHhccCCCCc---C-hhhHHHH------------HHHHHcccchhhHHHHHHHHHHhCCccchhHHhHHH
Q 036237 295 GRFMEALELLETMLIGDVLP---N-DATLVSA------------LSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLI 358 (689)
Q Consensus 295 g~~~~A~~~~~~m~~~g~~p---~-~~t~~~l------------l~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li 358 (689)
|++++|+..|+++.+. .| + ...+..+ ...+...|++++|...+..+.+.. +.+..++..+.
T Consensus 85 ~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~ 161 (359)
T 3ieg_A 85 GKLDEAEDDFKKVLKS--NPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVC-VWDAELRELRA 161 (359)
T ss_dssp TCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred CChHHHHHHHHHHHhc--CCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCchHHHHHHH
Confidence 7777777777777654 23 2 2222222 345566667777777776666654 23456666677
Q ss_pred hhHHhcCCHHHHHHHHHhcCC---CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH-HHH------------H
Q 036237 359 QMYSKCGSIESALTVFRAISK---KKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAI-TFI------------G 422 (689)
Q Consensus 359 ~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~------------~ 422 (689)
..|...|++++|...|+++.. .+...|..+...|...|++++|+..|++..+. .|+.. .+. .
T Consensus 162 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~ 239 (359)
T 3ieg_A 162 ECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKL--DQDHKRCFAHYKQVKKLNKLIE 239 (359)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CccchHHHHHHHHHHHHHHHHH
Confidence 777777777777777776654 34566777777777777777777777777663 34322 221 2
Q ss_pred HHHHHhccCcHHHHHHHHHHhHHhcCCCCC-h----hHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHH
Q 036237 423 VLNACSHAGLVNDGRRYFNMMINDYGIEPT-I----EHYGCLVDILCRTGYLEEAKSTIESM-PMRP-NFVIWMSLLSGA 495 (689)
Q Consensus 423 ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~----~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~ 495 (689)
+...+...|++++|...++.+... .|+ . ..+..+...|...|++++|...+++. ...| +..+|..+...+
T Consensus 240 ~a~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (359)
T 3ieg_A 240 SAEELIRDGRYTDATSKYESVMKT---EPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAY 316 (359)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH---CCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhc---CCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 244566677777777777777642 233 1 23445667777777777777777665 2223 566777777777
Q ss_pred HhcCChHHHHHHHHHHhhcCCCCchhHHHHHHHHH
Q 036237 496 RNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYA 530 (689)
Q Consensus 496 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~~~ 530 (689)
...|++++|...++++++++|+++.....|..++.
T Consensus 317 ~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~ 351 (359)
T 3ieg_A 317 LIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQR 351 (359)
T ss_dssp HHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Confidence 77777777777777777777777666666655543
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.81 E-value=4.1e-17 Score=168.26 Aligned_cols=294 Identities=11% Similarity=0.060 Sum_probs=245.7
Q ss_pred cchHHHHHHHHHhcCCHHHHHHHHHhcCC---CChHHHHHHHHHHHHcCChHHHHHHHHHhccCCCCcChhhHHHHHHHH
Q 036237 250 LVSWNAMINGYMKAGDVDSACELFDDMEI---RDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAV 326 (689)
Q Consensus 250 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~ 326 (689)
+..+..+...+.+.|++++|...|+++.. .+..+|..+...+...|++++|+..|+++.+.. +.+...+..+...+
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~ 81 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGHLL 81 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHHHH
Confidence 34677888999999999999999998763 367899999999999999999999999998753 22556788888899
Q ss_pred HcccchhhHHHHHHHHHHhCCc--cchhHHhHH------------HhhHHhcCCHHHHHHHHHhcCC---CChhhHHHHH
Q 036237 327 AGLAVLNKGRWMHSYIVKNGFV--VDGVLGTLL------------IQMYSKCGSIESALTVFRAISK---KKVGHWTAMI 389 (689)
Q Consensus 327 ~~~~~~~~a~~i~~~~~~~g~~--~~~~~~~~l------------i~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li 389 (689)
...|++++|...+..+.+.... .+...+..+ ...+...|++++|.+.|+++.. .+...|..+.
T Consensus 82 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ 161 (359)
T 3ieg_A 82 LKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRA 161 (359)
T ss_dssp HHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHH
Confidence 9999999999999999876531 244444444 5889999999999999998764 4677899999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC-hhHHH-----------
Q 036237 390 VGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPT-IEHYG----------- 457 (689)
Q Consensus 390 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~----------- 457 (689)
..|...|++++|+..|+++.+.. +.+..++..+...+...|++++|...|+...+. .|+ ...+.
T Consensus 162 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~---~~~~~~~~~~~~~~~~~~~~ 237 (359)
T 3ieg_A 162 ECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLKL---DQDHKRCFAHYKQVKKLNKL 237 (359)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh---CccchHHHHHHHHHHHHHHH
Confidence 99999999999999999999853 345678888999999999999999999999853 344 33332
Q ss_pred -HHHHHHHhcCCHHHHHHHHHhC-CCCCC-H----HHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchhHHHHHHHHH
Q 036237 458 -CLVDILCRTGYLEEAKSTIESM-PMRPN-F----VIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYA 530 (689)
Q Consensus 458 -~li~~~~~~g~~~~A~~~~~~~-~~~p~-~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~~~ 530 (689)
.+...+.+.|++++|...++++ ...|+ . ..|..+...+...|+++.|...++++++..|+++.++..++.+|.
T Consensus 238 ~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (359)
T 3ieg_A 238 IESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYL 317 (359)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 3367799999999999999986 22343 3 235567788999999999999999999999999999999999999
Q ss_pred hcCCcchHHHHHHHHHhC
Q 036237 531 AAGQWDKVSEVREMMKKR 548 (689)
Q Consensus 531 ~~g~~~~A~~~~~~m~~~ 548 (689)
..|++++|.+.+++..+.
T Consensus 318 ~~g~~~~A~~~~~~a~~~ 335 (359)
T 3ieg_A 318 IEEMYDEAIQDYEAAQEH 335 (359)
T ss_dssp HTTCHHHHHHHHHHHHTT
T ss_pred HcCCHHHHHHHHHHHHhc
Confidence 999999999999998864
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.81 E-value=9.6e-19 Score=178.65 Aligned_cols=348 Identities=12% Similarity=0.042 Sum_probs=161.5
Q ss_pred hcCChHHHHHHHhhCCCCCeehHHHHHHHHHhCCChHHHHHHHhhCCCCCcchHHHHHHHHHhCCChHHHHHHHhhcCc-
Q 036237 169 KFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDRDLFSWTCLVDGFSKCGKVEIAREIFYRMPN- 247 (689)
Q Consensus 169 ~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~- 247 (689)
+.|++++|.++++++..| .+|..|..++.+.|++++|++.|.+. +|..+|..++.++...|++++|+..+....+
T Consensus 15 ~~~~ld~A~~fae~~~~~--~vWs~La~A~l~~g~~~eAIdsfika--~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~ 90 (449)
T 1b89_A 15 HIGNLDRAYEFAERCNEP--AVWSQLAKAQLQKGMVKEAIDSYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQMARKK 90 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCCCh--HHHHHHHHHHHHcCCHHHHHHHHHcC--CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh
Confidence 678889999999988655 48899999999999999999999664 5677888899999999999999997777665
Q ss_pred -CCcchHHHHHHHHHhcCCHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHhccCCCCcChhhHHHHHHHH
Q 036237 248 -RNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAV 326 (689)
Q Consensus 248 -~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~ 326 (689)
+++.+.+.|+.+|.++|+++++.++++. |+..+|+.+...|...|++++|..+|..+ ..|..+..++
T Consensus 91 ~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~---pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n~~~LA~~L 158 (449)
T 1b89_A 91 ARESYVETELIFALAKTNRLAELEEFING---PNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTL 158 (449)
T ss_dssp ------------------CHHHHTTTTTC---C----------------CTTTHHHHHHHT---------TCHHHHHHHH
T ss_pred CccchhHHHHHHHHHHhCCHHHHHHHHcC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------hhHHHHHHHH
Confidence 3467788899999999999998887753 67779999999999999999999999877 3788888899
Q ss_pred HcccchhhHHHHHHHHHHhCCccchhHHhHHHhhHHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHH
Q 036237 327 AGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFN 406 (689)
Q Consensus 327 ~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~ 406 (689)
.++|++++|.+.+..+ .++.+|..++.+|...|+++.|......+. .++.....++..|.+.|++++|+.+++
T Consensus 159 ~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-~~ad~l~~lv~~Yek~G~~eEai~lLe 231 (449)
T 1b89_A 159 VHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-VHADELEELINYYQDRGYFEELITMLE 231 (449)
T ss_dssp HTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-TCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-hCHhhHHHHHHHHHHCCCHHHHHHHHH
Confidence 9999999988888877 367888899999999999999977777654 444445568889999999999999999
Q ss_pred HHHHCCCCCC-HHHHHHHHHHHh--ccCcHHHHHHHHHHhHHhcCCCC------ChhHHHHHHHHHHhcCCHHHHHHHHH
Q 036237 407 KMCRMGMKPT-AITFIGVLNACS--HAGLVNDGRRYFNMMINDYGIEP------TIEHYGCLVDILCRTGYLEEAKSTIE 477 (689)
Q Consensus 407 ~m~~~g~~p~-~~t~~~ll~a~~--~~g~~~~a~~~~~~~~~~~~~~p------~~~~~~~li~~~~~~g~~~~A~~~~~ 477 (689)
.... ..+. ...|+.+.-+++ +.+++.+.++.|..-. .++| +...|..++-+|..-++++.|....-
T Consensus 232 ~aL~--le~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~i---ni~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~tm~ 306 (449)
T 1b89_A 232 AALG--LERAHMGMFTELAILYSKFKPQKMREHLELFWSRV---NIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMM 306 (449)
T ss_dssp HHTT--STTCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTS---CHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHhC--CcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh---cCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHH
Confidence 9875 3343 335555544444 5666777777665433 5555 46789999999999999999888766
Q ss_pred hCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchhHHHHH-------------HHHHhcCCcchHHHHHHH
Q 036237 478 SMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLS-------------NIYAAAGQWDKVSEVREM 544 (689)
Q Consensus 478 ~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~-------------~~~~~~g~~~~A~~~~~~ 544 (689)
+-+ |+..--..+.....+-.+.|.-.++..--++..| ...+.|. ..+.+.|.+.-+..++..
T Consensus 307 ~h~--~~a~~~~~f~~~~~kv~n~elyYkai~fyl~~~p---~~l~~ll~~l~~~ld~~r~v~~~~~~~~l~l~~~yl~~ 381 (449)
T 1b89_A 307 NHP--TDAWKEGQFKDIITKVANVELYYRAIQFYLEFKP---LLLNDLLMVLSPRLDHTRAVNYFSKVKQLPLVKPYLRS 381 (449)
T ss_dssp HST--TTTCCHHHHHHHHHHCSSTHHHHHHHHHHHHHCG---GGHHHHHHHHGGGCCHHHHHHHHHHTTCTTTTHHHHHH
T ss_pred hCC--hhhhhhHHHHHHHhchhHHHHHHHHHHHHHhcCH---HHHHHHHHHHHhccCcHHHHHHHHHcCCcHHHHHHHHH
Confidence 653 2211112223333445555544444444444433 2333333 444455555555555544
Q ss_pred HHhCC
Q 036237 545 MKKRG 549 (689)
Q Consensus 545 m~~~~ 549 (689)
+.+.+
T Consensus 382 v~~~n 386 (449)
T 1b89_A 382 VQNHN 386 (449)
T ss_dssp HHTTC
T ss_pred HHHhh
Confidence 44433
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.80 E-value=2.6e-18 Score=175.50 Aligned_cols=281 Identities=15% Similarity=0.127 Sum_probs=120.2
Q ss_pred CCCHHHHHHHHhcccCCCChhhHHHHHHHHHhCCCchHHHHHHHHhHhCCCCCCcccHHHHHHHHHhcCChHHHHHHHHH
Q 036237 68 INNLHYARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGL 147 (689)
Q Consensus 68 ~g~~~~A~~~f~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~ 147 (689)
.|++++|.+++++++ .|+ +|..+..++.+.|++++|++.|.+. +|..+|..++.++...|++++|..++..
T Consensus 16 ~~~ld~A~~fae~~~-~~~--vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~yl~~ 86 (449)
T 1b89_A 16 IGNLDRAYEFAERCN-EPA--VWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQM 86 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccCHHHHHHHHHhCC-ChH--HHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 799999999999998 665 8999999999999999999999753 6788999999999999999999998888
Q ss_pred HHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhhCCCCCeehHHHHHHHHHhCCChHHHHHHHhhCCCCCcchHHHHHH
Q 036237 148 VFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDRDLFSWTCLVD 227 (689)
Q Consensus 148 ~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~d~~~~~~li~ 227 (689)
..+. .+++.+.+.|+.+|.++|+++++.++++. |+..+|+.+...|...|++++|...|..+ ..|..++.
T Consensus 87 ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~---pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a-----~n~~~LA~ 156 (449)
T 1b89_A 87 ARKK--ARESYVETELIFALAKTNRLAELEEFING---PNNAHIQQVGDRCYDEKMYDAAKLLYNNV-----SNFGRLAS 156 (449)
T ss_dssp ------------------------CHHHHTTTTTC---C----------------CTTTHHHHHHHT-----TCHHHHHH
T ss_pred HHHh--CccchhHHHHHHHHHHhCCHHHHHHHHcC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHh-----hhHHHHHH
Confidence 8774 56688899999999999999999988864 67789999999999999999999999988 47999999
Q ss_pred HHHhCCChHHHHHHHhhcCcCCcchHHHHHHHHHhcCCHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHh
Q 036237 228 GFSKCGKVEIAREIFYRMPNRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETM 307 (689)
Q Consensus 228 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 307 (689)
++.+.|++++|.+.++++ .++.+|..++.+|...|+++.|......+. .++.-...++..|.+.|++++|+.+++..
T Consensus 157 ~L~~Lg~yq~AVea~~KA--~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-~~ad~l~~lv~~Yek~G~~eEai~lLe~a 233 (449)
T 1b89_A 157 TLVHLGEYQAAVDGARKA--NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-VHADELEELINYYQDRGYFEELITMLEAA 233 (449)
T ss_dssp HHHTTTCHHHHHHHHHHH--TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHhccHHHHHHHHHHc--CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-hCHhhHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 999999999999999988 378899999999999999999987777655 44444556888999999999999999988
Q ss_pred ccCCCCcChhhHHHHHHHHH--cccchhhHHHHHHHHHHhCCcc------chhHHhHHHhhHHhcCCHHHHHHH
Q 036237 308 LIGDVLPNDATLVSALSAVA--GLAVLNKGRWMHSYIVKNGFVV------DGVLGTLLIQMYSKCGSIESALTV 373 (689)
Q Consensus 308 ~~~g~~p~~~t~~~ll~a~~--~~~~~~~a~~i~~~~~~~g~~~------~~~~~~~li~~~~~~g~~~~A~~~ 373 (689)
+... +.-...|+.+.-+++ +.+.+.+..+.|. .+.++++ +..+|..++-.|...++++.|...
T Consensus 234 L~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~--~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~t 304 (449)
T 1b89_A 234 LGLE-RAHMGMFTELAILYSKFKPQKMREHLELFW--SRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIIT 304 (449)
T ss_dssp TTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHS--TTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHH
T ss_pred hCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHH--HHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHHH
Confidence 7543 223333443333333 2333333333332 1122222 344455555555555555555443
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.78 E-value=1.4e-16 Score=162.30 Aligned_cols=283 Identities=9% Similarity=-0.045 Sum_probs=184.4
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHhcCC---CChHHHHHHHHHHHHcCChHHHHHHHHHhccCCCCcChhhHHHHHHHHH
Q 036237 251 VSWNAMINGYMKAGDVDSACELFDDMEI---RDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVA 327 (689)
Q Consensus 251 ~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~ 327 (689)
.++..+...+...|++++|.++|+++.. .+...+..++..+...|++++|+.+++++.+.. +.+...+..+...+.
T Consensus 23 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 101 (330)
T 3hym_B 23 DVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVGCYYL 101 (330)
T ss_dssp TTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHH
Confidence 3334444444444444444444444331 123334444444555555555555555554421 112333444444444
Q ss_pred ccc-chhhHHHHHHHHHHhCCccchhHHhHHHhhHHhcCCHHHHHHHHHhcCC---CChhhHHHHHHHHHHcCCHHHHHH
Q 036237 328 GLA-VLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISK---KKVGHWTAMIVGLGMHGMATQALD 403 (689)
Q Consensus 328 ~~~-~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~ 403 (689)
..| ++++|...+..+.+.. +.+...+..+...|...|++++|.+.|+++.. .+...|..+...|...|++++|++
T Consensus 102 ~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 180 (330)
T 3hym_B 102 MVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAER 180 (330)
T ss_dssp HSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHHHHH
T ss_pred HhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHHHHHH
Confidence 555 4555555555554433 22455566677777777777777777776653 345667778888888888888888
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcC-------CCCChhHHHHHHHHHHhcCCHHHHHHHH
Q 036237 404 LFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYG-------IEPTIEHYGCLVDILCRTGYLEEAKSTI 476 (689)
Q Consensus 404 l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~-------~~p~~~~~~~li~~~~~~g~~~~A~~~~ 476 (689)
.|++..+.. +.+...+..+...+...|++++|...++.+..... .+.....+..+...|.+.|++++|...+
T Consensus 181 ~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 259 (330)
T 3hym_B 181 FFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYH 259 (330)
T ss_dssp HHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 888887742 23456777788888888888888888888774321 1333578888999999999999999998
Q ss_pred HhC-CC-CCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchhHHHHHHHH-HhcCCcc
Q 036237 477 ESM-PM-RPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIY-AAAGQWD 536 (689)
Q Consensus 477 ~~~-~~-~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~~-~~~g~~~ 536 (689)
+++ .. +.+...|..+...+...|++++|...+++++++.|+++..+..++.++ ...|+.+
T Consensus 260 ~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 260 RQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIEMYIGDSE 322 (330)
T ss_dssp HHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHHHTTTTC--
T ss_pred HHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHHHHHHHhCchh
Confidence 876 22 236678889999999999999999999999999999999999999888 4555543
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.77 E-value=8.4e-15 Score=165.95 Aligned_cols=380 Identities=12% Similarity=0.086 Sum_probs=302.1
Q ss_pred ccHHHHHHHHHhcCChHHHHHHHHHHHHhC--CCCchhHHHHHHHHHHhcCChHHHHHHHhhCCCCCeehHHHHHHHHHh
Q 036237 123 FTLPCVIKGAARLGAIKEGKQIHGLVFKLG--FGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVK 200 (689)
Q Consensus 123 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~ 200 (689)
.-....++++...|.+.++.+++++++-.+ +..+....+.|+.+..+. +........++...-+ ...+...+..
T Consensus 986 eeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~d---~~eIA~Iai~ 1061 (1630)
T 1xi4_A 986 EEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNYD---APDIANIAIS 1061 (1630)
T ss_pred HHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhcc---HHHHHHHHHh
Confidence 334667888999999999999999998443 124556778888887777 5666666666665333 5567888999
Q ss_pred CCChHHHHHHHhhCCCCCcchHHHHHHHHHhCCChHHHHHHHhhcCcCCcchHHHHHHHHHhcCCHHHHHHHHHhcCCCC
Q 036237 201 KGEVEVAMKLFDEMPDRDLFSWTCLVDGFSKCGKVEIAREIFYRMPNRNLVSWNAMINGYMKAGDVDSACELFDDMEIRD 280 (689)
Q Consensus 201 ~g~~~~A~~~~~~m~~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 280 (689)
.|.+++|..+|++.... ....+.++ -..+++++|.++.++.. .+.+|..+..++.+.|++++|.+.|.+. .|
T Consensus 1062 lglyEEAf~IYkKa~~~-~~A~~VLi---e~i~nldrAiE~Aervn--~p~vWsqLAKAql~~G~~kEAIdsYiKA--dD 1133 (1630)
T 1xi4_A 1062 NELFEEAFAIFRKFDVN-TSAVQVLI---EHIGNLDRAYEFAERCN--EPAVWSQLAKAQLQKGMVKEAIDSYIKA--DD 1133 (1630)
T ss_pred CCCHHHHHHHHHHcCCH-HHHHHHHH---HHHhhHHHHHHHHHhcC--CHHHHHHHHHHHHhCCCHHHHHHHHHhc--CC
Confidence 99999999999997522 11222232 27789999999998774 4788999999999999999999999774 67
Q ss_pred hHHHHHHHHHHHHcCChHHHHHHHHHhccCCCCcChhhHHHHHHHHHcccchhhHHHHHHHHHHhCCccchhHHhHHHhh
Q 036237 281 LITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQM 360 (689)
Q Consensus 281 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~ 360 (689)
...|..++..+.+.|++++|+++|....+.. ++....+.+..+|++.++++....+. + .++...+..+.+.
T Consensus 1134 ~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI----~---~~n~ad~~~iGd~ 1204 (1630)
T 1xi4_A 1134 PSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI----N---GPNNAHIQQVGDR 1204 (1630)
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH----h---CCCHHHHHHHHHH
Confidence 8889999999999999999999999877654 44444446888999998888644442 2 3455566679999
Q ss_pred HHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHH
Q 036237 361 YSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYF 440 (689)
Q Consensus 361 ~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~ 440 (689)
|...|++++|...|..+ ..|..+...|.+.|++++|++.+++. .+..+|..+-.+|...|++..|....
T Consensus 1205 le~eg~YeeA~~~Y~kA-----~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWkev~~acve~~Ef~LA~~cg 1273 (1630)
T 1xi4_A 1205 CYDEKMYDAAKLLYNNV-----SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCG 1273 (1630)
T ss_pred HHhcCCHHHHHHHHHhh-----hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 99999999999999986 48999999999999999999999976 35689999999999999999998876
Q ss_pred HHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc--CChHHHHHHHHHHhhcCC
Q 036237 441 NMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESM-PMRP-NFVIWMSLLSGARNH--GNKDIGEYAANNLIKVAP 516 (689)
Q Consensus 441 ~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~--g~~~~a~~~~~~~~~~~p 516 (689)
.. +..++..+..++..|.+.|.+++|+.+++.. +..| ....|.-|...+.+. ++..++.+.|..-+.+.|
T Consensus 1274 l~------Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~peklmEhlk~f~~rini~k 1347 (1630)
T 1xi4_A 1274 LH------IVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPK 1347 (1630)
T ss_pred Hh------hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhcccch
Confidence 53 3356677889999999999999999999775 4444 445777777777665 567778888887777666
Q ss_pred -----CCchhHHHHHHHHHhcCCcchHHH
Q 036237 517 -----DTIGCYVVLSNIYAAAGQWDKVSE 540 (689)
Q Consensus 517 -----~~~~~~~~L~~~~~~~g~~~~A~~ 540 (689)
.+...+..+...|.+.|+|+.|..
T Consensus 1348 ~~r~~e~~~lW~elv~LY~~~~e~dnA~~ 1376 (1630)
T 1xi4_A 1348 VLRAAEQAHLWAELVFLYDKYEEYDNAII 1376 (1630)
T ss_pred HhHHHHHHHHHHHHHHHHHhcccHHHHHH
Confidence 567788899999999999999984
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.77 E-value=7.7e-16 Score=166.55 Aligned_cols=349 Identities=9% Similarity=-0.043 Sum_probs=233.5
Q ss_pred cCChHHHHHHHhhCCC-CCeehHHHHHHHHHh----CCChHHHHHHHhhCCC-CCcchHHHHHHHHHh----CCChHHHH
Q 036237 170 FGEIDLGRRVFDAMDD-KDLVSWNCLIDGYVK----KGEVEVAMKLFDEMPD-RDLFSWTCLVDGFSK----CGKVEIAR 239 (689)
Q Consensus 170 ~g~~~~A~~~~~~m~~-~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~-~d~~~~~~li~~~~~----~g~~~~A~ 239 (689)
.+++++|...|++..+ .+...+..|-..|.. .++.++|+..|++..+ .+...+..+...|.. .++.++|.
T Consensus 56 ~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~ 135 (490)
T 2xm6_A 56 TKDLTQAMDWFRRAAEQGYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKGLPQAQQNLGVMYHEGNGVKVDKAESV 135 (490)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHH
T ss_pred CcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHH
Confidence 3444444444443321 233333444444444 4444444444444332 233344444445544 45555565
Q ss_pred HHHhhcCcC-CcchHHHHHHHHHh----cCCHHHHHHHHHhcCC-CChHHHHHHHHHHHH----cCChHHHHHHHHHhcc
Q 036237 240 EIFYRMPNR-NLVSWNAMINGYMK----AGDVDSACELFDDMEI-RDLITWNSMIAGYEL----NGRFMEALELLETMLI 309 (689)
Q Consensus 240 ~~~~~~~~~-~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~ 309 (689)
..|++..+. ++..+..|..+|.. .++.++|.+.|++..+ .+..++..+...|.. .++.++|++.|++..+
T Consensus 136 ~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~ 215 (490)
T 2xm6_A 136 KWFRLAAEQGRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQGNVWSCNQLGYMYSRGLGVERNDAISAQWYRKSAT 215 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHH
Confidence 555555443 24455556666665 5666777766665543 356667777777766 6777777777777766
Q ss_pred CCCCcChhhHHHHHHHHHc----ccchhhHHHHHHHHHHhCCccchhHHhHHHhhHHh----cCCHHHHHHHHHhcCC-C
Q 036237 310 GDVLPNDATLVSALSAVAG----LAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSK----CGSIESALTVFRAISK-K 380 (689)
Q Consensus 310 ~g~~p~~~t~~~ll~a~~~----~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~-~ 380 (689)
.| +...+..+...+.. .++.++|..++....+.| +...+..|..+|.. .++.++|.+.|++..+ .
T Consensus 216 ~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~ 289 (490)
T 2xm6_A 216 SG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG 289 (490)
T ss_dssp TT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT
T ss_pred CC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC
Confidence 54 33445555555543 567777777777776654 34455667777776 7899999999988765 4
Q ss_pred ChhhHHHHHHHHHHc-----CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC---cHHHHHHHHHHhHHhcCCCCC
Q 036237 381 KVGHWTAMIVGLGMH-----GMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAG---LVNDGRRYFNMMINDYGIEPT 452 (689)
Q Consensus 381 ~~~~~~~li~~~~~~-----g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g---~~~~a~~~~~~~~~~~~~~p~ 452 (689)
+...+..+...|... +++++|+..|++..+.| +...+..+...+...| +.++|.++|++..+. .+
T Consensus 290 ~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~----~~ 362 (490)
T 2xm6_A 290 NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK----GE 362 (490)
T ss_dssp CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT----TC
T ss_pred CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC----CC
Confidence 667888888888887 89999999999998865 4456666666776655 889999999998852 46
Q ss_pred hhHHHHHHHHHHh----cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHhhcCCC---Cchh
Q 036237 453 IEHYGCLVDILCR----TGYLEEAKSTIESMPMRPNFVIWMSLLSGARN----HGNKDIGEYAANNLIKVAPD---TIGC 521 (689)
Q Consensus 453 ~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~p~---~~~~ 521 (689)
...+..|..+|.. .+++++|...+++.-...+...+..|...+.. .++.++|...++++.+.+|+ ++.+
T Consensus 363 ~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~~a 442 (490)
T 2xm6_A 363 KAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQGLSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMNLFGTENR 442 (490)
T ss_dssp HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCCHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCCCcCCHHH
Confidence 7788889999988 89999999999987434577888889988888 89999999999999998854 6666
Q ss_pred HHHHHHHHHh
Q 036237 522 YVVLSNIYAA 531 (689)
Q Consensus 522 ~~~L~~~~~~ 531 (689)
...|+.++..
T Consensus 443 ~~~l~~~~~~ 452 (490)
T 2xm6_A 443 NITEKKLTAK 452 (490)
T ss_dssp HHHHTTSCHH
T ss_pred HHHHHhcCHh
Confidence 6666665543
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.77 E-value=1.5e-15 Score=165.94 Aligned_cols=405 Identities=10% Similarity=0.057 Sum_probs=264.7
Q ss_pred CcccHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhhCCC--CCeehHHHHHHH-
Q 036237 121 DNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDD--KDLVSWNCLIDG- 197 (689)
Q Consensus 121 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~~~~~~~~li~~- 197 (689)
|...|..++.. ...|+++.|+.+++.+++.- +.+...|..++..+.+.|++++|..+|++... |++..|...+..
T Consensus 12 ~~~~w~~l~~~-~~~~~~~~a~~~~e~al~~~-P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p~~~lw~~~~~~~ 89 (530)
T 2ooe_A 12 DLDAWSILIRE-AQNQPIDKARKTYERLVAQF-PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVLHIDLWKCYLSYV 89 (530)
T ss_dssp CHHHHHHHHHH-HHSSCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCCCHHHHHHHHHHH
T ss_pred CHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChHHHHHHHHHH
Confidence 45567777763 66788888888888887763 55667788888888888888888888887764 555566666642
Q ss_pred HHhCCChHHHHH----HHhhCCC------CCcchHHHHHHHHHh---------CCChHHHHHHHhhcCcCCcchHHHHHH
Q 036237 198 YVKKGEVEVAMK----LFDEMPD------RDLFSWTCLVDGFSK---------CGKVEIAREIFYRMPNRNLVSWNAMIN 258 (689)
Q Consensus 198 ~~~~g~~~~A~~----~~~~m~~------~d~~~~~~li~~~~~---------~g~~~~A~~~~~~~~~~~~~~~~~li~ 258 (689)
....|+.++|.+ +|++... ++...|...+..... .|+++.|..+|++.++........+-.
T Consensus 90 ~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~~~~ 169 (530)
T 2ooe_A 90 RETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQLWR 169 (530)
T ss_dssp HHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHHHHH
T ss_pred HHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHHHHH
Confidence 234566665554 5544321 233455555554433 455666666666665411111111111
Q ss_pred HHHhcCCHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHH------hccCC---CCcCh--------hhHHH
Q 036237 259 GYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLET------MLIGD---VLPND--------ATLVS 321 (689)
Q Consensus 259 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~------m~~~g---~~p~~--------~t~~~ 321 (689)
.|.. ++... +..+...++. ...+++.+|..++.+ ..+.. ++|+. ..|..
T Consensus 170 ~~~~---~e~~~---------~~~~~~~~l~--~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~ 235 (530)
T 2ooe_A 170 DYNK---YEEGI---------NIHLAKKMIE--DRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKK 235 (530)
T ss_dssp HHHH---HHHHH---------CHHHHHHHHH--TTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHH
T ss_pred HHHH---HHHhh---------chhHHHHHHH--HhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHH
Confidence 1111 00000 0000011110 123445666666655 22221 23331 22322
Q ss_pred HHHHHHc----ccch----hhHHHHHHHHHHhCCccchhHHhHHHhhHHh-------cCCHH-------HHHHHHHhcCC
Q 036237 322 ALSAVAG----LAVL----NKGRWMHSYIVKNGFVVDGVLGTLLIQMYSK-------CGSIE-------SALTVFRAISK 379 (689)
Q Consensus 322 ll~a~~~----~~~~----~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~-------~g~~~-------~A~~~~~~~~~ 379 (689)
.+.-... .++. +.+..+++.++... +.+..+|..++..+.+ .|+++ +|..+|++...
T Consensus 236 ~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~ 314 (530)
T 2ooe_A 236 YIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAIS 314 (530)
T ss_dssp HHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHcCCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHH
Confidence 2222111 1222 35667888887763 4567788888888775 68877 89999998864
Q ss_pred ---C-ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC-
Q 036237 380 ---K-KVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTA--ITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPT- 452 (689)
Q Consensus 380 ---~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~--~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~- 452 (689)
| +...|..++..+.+.|++++|..+|+++.+ +.|+. ..|...+..+.+.|++++|+.+|+...+ ..|.
T Consensus 315 ~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~---~~~~~ 389 (530)
T 2ooe_A 315 TLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLA--IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARE---DARTR 389 (530)
T ss_dssp TTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--SSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT---CTTCC
T ss_pred HhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhC--ccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHh---ccCCc
Confidence 3 577899999999999999999999999998 46653 4788888888899999999999999984 3343
Q ss_pred hhHHHHHHHH-HHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCch----hHHHH
Q 036237 453 IEHYGCLVDI-LCRTGYLEEAKSTIESM-PMRP-NFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIG----CYVVL 525 (689)
Q Consensus 453 ~~~~~~li~~-~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~----~~~~L 525 (689)
...|...+.+ +...|+.++|..+|++. ...| +...|..++..+...|+.+.|..+++++++..|.++. .+...
T Consensus 390 ~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~ 469 (530)
T 2ooe_A 390 HHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARF 469 (530)
T ss_dssp THHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHH
Confidence 3334333322 34689999999999976 2334 6789999999999999999999999999998776654 66677
Q ss_pred HHHHHhcCCcchHHHHHHHHHh
Q 036237 526 SNIYAAAGQWDKVSEVREMMKK 547 (689)
Q Consensus 526 ~~~~~~~g~~~~A~~~~~~m~~ 547 (689)
+......|+.+.+..+.+++.+
T Consensus 470 ~~~e~~~G~~~~~~~~~~r~~~ 491 (530)
T 2ooe_A 470 LAFESNIGDLASILKVEKRRFT 491 (530)
T ss_dssp HHHHHHSSCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHH
Confidence 7778889999999999998875
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.76 E-value=3.6e-14 Score=160.92 Aligned_cols=455 Identities=12% Similarity=0.110 Sum_probs=266.5
Q ss_pred HHhcCCCchHHHHHHHHHHHhCCCCCchHHHHHhhcccccCCCCHHHHHHHHhc-----ccCCCChhhHHHHHHHHHhCC
Q 036237 27 ILKFSSTHKETQQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDR-----ILQHPSLVLYNLLIKCYVFNQ 101 (689)
Q Consensus 27 ~l~~c~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~g~~~~A~~~f~~-----~~~~~~~~~~~~ll~~~~~~g 101 (689)
+++-|......+..-..+++. .|+.+|+..++- .. +.=+++.++ +++..++.--...+.+|...|
T Consensus 930 li~vt~~n~l~k~~arylv~r---~d~~lW~~vl~~-----~n--~~RR~Lidqv~a~aL~e~~~PeeVs~~vKaf~~ag 999 (1630)
T 1xi4_A 930 LINVCNENSLFKSLSRYLVRR---KDPELWGSVLLE-----SN--PYRRPLIDQVVQTALSETQDPEEVSVTVKAFMTAD 999 (1630)
T ss_pred HHHHHhcchhHHHHHHHHHHh---cCHHHHHHHhcC-----Cc--HHHHHHHHHHHHhhcccccCHHHhHHHHHHHHhCC
Confidence 444444444444444455443 466777766632 11 111233332 222223333345677777888
Q ss_pred CchHHHHHHHHhHhCCC--CCCcccHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHH
Q 036237 102 RSHEALTLFCDLLDRFL--LPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRV 179 (689)
Q Consensus 102 ~~~~a~~~~~~m~~~g~--~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~ 179 (689)
.+.+|++++++..-.+- .-+...-+.++.+..+. +...+.++....- ......+...+...|.+++|..+
T Consensus 1000 lp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd-------~~d~~eIA~Iai~lglyEEAf~I 1071 (1630)
T 1xi4_A 1000 LPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLD-------NYDAPDIANIAISNELFEEAFAI 1071 (1630)
T ss_pred CHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhh-------hccHHHHHHHHHhCCCHHHHHHH
Confidence 88888888887773311 01223344455444444 4455555444432 11233456666677777777777
Q ss_pred HhhCCCCCeehHHHHHHHHHhCCChHHHHHHHhhCCCCCcchHHHHHHHHHhCCChHHHHHHHhhcCcCCcchHHHHHHH
Q 036237 180 FDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDRDLFSWTCLVDGFSKCGKVEIAREIFYRMPNRNLVSWNAMING 259 (689)
Q Consensus 180 ~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~ 259 (689)
|++... .....+.++. ..|++++|.++.++.. +..+|..+..++...|++++|...|.+. .+...|..++..
T Consensus 1072 YkKa~~-~~~A~~VLie---~i~nldrAiE~Aervn--~p~vWsqLAKAql~~G~~kEAIdsYiKA--dD~say~eVa~~ 1143 (1630)
T 1xi4_A 1072 FRKFDV-NTSAVQVLIE---HIGNLDRAYEFAERCN--EPAVWSQLAKAQLQKGMVKEAIDSYIKA--DDPSSYMEVVQA 1143 (1630)
T ss_pred HHHcCC-HHHHHHHHHH---HHhhHHHHHHHHHhcC--CHHHHHHHHHHHHhCCCHHHHHHHHHhc--CChHHHHHHHHH
Confidence 777641 1111222222 5677777777777653 3556777777777777777777777654 556667777777
Q ss_pred HHhcCCHHHHHHHHHhcCC--CChHHHHHHHHHHHHcCChHHHHHHHHHhccCCCCcChhhHHHHHHHHHcccchhhHHH
Q 036237 260 YMKAGDVDSACELFDDMEI--RDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRW 337 (689)
Q Consensus 260 ~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~ 337 (689)
+.+.|++++|.+.|....+ +++...+.++.+|++.+++++...+. . .|+...+..+...|...|++++|..
T Consensus 1144 ~~~lGkyEEAIeyL~mArk~~~e~~Idt~LafaYAKl~rleele~fI----~---~~n~ad~~~iGd~le~eg~YeeA~~ 1216 (1630)
T 1xi4_A 1144 ANTSGNWEELVKYLQMARKKARESYVETELIFALAKTNRLAELEEFI----N---GPNNAHIQQVGDRCYDEKMYDAAKL 1216 (1630)
T ss_pred HHHcCCHHHHHHHHHHHHhhcccccccHHHHHHHHhhcCHHHHHHHH----h---CCCHHHHHHHHHHHHhcCCHHHHHH
Confidence 7777777777777765442 23333445777777777776433322 1 3455566667777777777777777
Q ss_pred HHHHHHHhCCccchhHHhHHHhhHHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH
Q 036237 338 MHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTA 417 (689)
Q Consensus 338 i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~ 417 (689)
+|..+ ..|..+...|.+.|++++|.+.+++. .+..+|..+..+|...|++..|...... +..+.
T Consensus 1217 ~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA--~n~~aWkev~~acve~~Ef~LA~~cgl~-----Iiv~~ 1280 (1630)
T 1xi4_A 1217 LYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA--NSTRTWKEVCFACVDGKEFRLAQMCGLH-----IVVHA 1280 (1630)
T ss_pred HHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh--CCHHHHHHHHHHHhhhhHHHHHHHHHHh-----hhcCH
Confidence 77764 36677777777777777777777766 4556777777777777777777665543 22344
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHh--cCCHHHHHHHHHh-CCCCC------CHHH
Q 036237 418 ITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPT-IEHYGCLVDILCR--TGYLEEAKSTIES-MPMRP------NFVI 487 (689)
Q Consensus 418 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~--~g~~~~A~~~~~~-~~~~p------~~~~ 487 (689)
..+..++..|.+.|.+++|+.+++... ++.|. ...|+-|..+|++ -+++.|+.++|.+ +.++| +...
T Consensus 1281 deLeeli~yYe~~G~feEAI~LlE~aL---~LeraH~gmftELaiLyaKy~peklmEhlk~f~~rini~k~~r~~e~~~l 1357 (1630)
T 1xi4_A 1281 DELEELINYYQDRGYFEELITMLEAAL---GLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHL 1357 (1630)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHh---ccChhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhcccchHhHHHHHHHH
Confidence 455566777777777777777776665 44443 4555555555554 3455666665554 33222 4556
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHhh------------cCCCCchhHHHHHHHHHhcC
Q 036237 488 WMSLLSGARNHGNKDIGEYAANNLIK------------VAPDTIGCYVVLSNIYAAAG 533 (689)
Q Consensus 488 ~~~ll~~~~~~g~~~~a~~~~~~~~~------------~~p~~~~~~~~L~~~~~~~g 533 (689)
|..+...|.+.|+++.|....-.-.. ..+.++..|...+.-|....
T Consensus 1358 W~elv~LY~~~~e~dnA~~tm~~h~~~a~~~~~Fk~~i~kv~n~elyykai~Fyl~~~ 1415 (1630)
T 1xi4_A 1358 WAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYLEFK 1415 (1630)
T ss_pred HHHHHHHHHhcccHHHHHHHHHhccHhhhhhHHHHHHhcccccHHHHHHHHHHHHhhC
Confidence 77777777777777776632211111 13456666666666665555
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.76 E-value=5.2e-17 Score=168.58 Aligned_cols=272 Identities=13% Similarity=0.037 Sum_probs=181.8
Q ss_pred CCChHHHHH-HHhhcCcC-------CcchHHHHHHHHHhcCCHHHHHHHHHhcCC---CChHHHHHHHHHHHHcCChHHH
Q 036237 232 CGKVEIARE-IFYRMPNR-------NLVSWNAMINGYMKAGDVDSACELFDDMEI---RDLITWNSMIAGYELNGRFMEA 300 (689)
Q Consensus 232 ~g~~~~A~~-~~~~~~~~-------~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A 300 (689)
.|++++|.. .+.+..+. +...+..+...|.+.|++++|...|+++.+ .+..+|..+...|...|++++|
T Consensus 38 ~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A 117 (368)
T 1fch_A 38 LSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLA 117 (368)
T ss_dssp --------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHH
Confidence 355555555 55544331 123344555555555555555555555432 2344455555555555555555
Q ss_pred HHHHHHhccCCCCcChhhHHHHHHHHHcccchhhHHHHHHHHHHhCCccchhHHhHHHhhHHhcCCHHHHHHHHHhcCCC
Q 036237 301 LELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKK 380 (689)
Q Consensus 301 ~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 380 (689)
++.|+++.+ .. +.+..++..+...|...|++++|.+.|+++...
T Consensus 118 ~~~~~~al~-----------------------------------~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 161 (368)
T 1fch_A 118 ISALRRCLE-----------------------------------LK-PDNQTALMALAVSFTNESLQRQACEILRDWLRY 161 (368)
T ss_dssp HHHHHHHHH-----------------------------------HC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHh-----------------------------------cC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 555555543 32 223444444555555555555555555544321
Q ss_pred ---ChhhH----------------HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHhccCcHHHHHH
Q 036237 381 ---KVGHW----------------TAMIVGLGMHGMATQALDLFNKMCRMGMKPT---AITFIGVLNACSHAGLVNDGRR 438 (689)
Q Consensus 381 ---~~~~~----------------~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~---~~t~~~ll~a~~~~g~~~~a~~ 438 (689)
+...+ ..+...+ ..|++++|+..|+++.+. .|+ ..++..+...+...|++++|..
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~--~p~~~~~~~~~~l~~~~~~~g~~~~A~~ 238 (368)
T 1fch_A 162 TPAYAHLVTPAEEGAGGAGLGPSKRILGSLL-SDSLFLEVKELFLAAVRL--DPTSIDPDVQCGLGVLFNLSGEYDKAVD 238 (368)
T ss_dssp STTTGGGCC---------------CTTHHHH-HHHHHHHHHHHHHHHHHH--STTSCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CcCcHHHHHHHHHHhhhhcccHHHHHHHHHh-hcccHHHHHHHHHHHHHh--CcCcccHHHHHHHHHHHHHcCCHHHHHH
Confidence 11111 1233334 889999999999999884 444 6788889999999999999999
Q ss_pred HHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCC
Q 036237 439 YFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESM-PMR-PNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAP 516 (689)
Q Consensus 439 ~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p 516 (689)
.|+.+... .+.+...+..+...|.+.|++++|...++++ ... .+...|..+...+...|++++|...+++++++.|
T Consensus 239 ~~~~al~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~ 316 (368)
T 1fch_A 239 CFTAALSV--RPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQR 316 (368)
T ss_dssp HHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHh--CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 99998852 2334788999999999999999999999986 233 4678999999999999999999999999999988
Q ss_pred CC-----------chhHHHHHHHHHhcCCcchHHHHHHH
Q 036237 517 DT-----------IGCYVVLSNIYAAAGQWDKVSEVREM 544 (689)
Q Consensus 517 ~~-----------~~~~~~L~~~~~~~g~~~~A~~~~~~ 544 (689)
++ +.++..++.+|...|++++|..++++
T Consensus 317 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 355 (368)
T 1fch_A 317 KSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADAR 355 (368)
T ss_dssp TC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTT
T ss_pred CCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHH
Confidence 77 78999999999999999999988763
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.76 E-value=2.5e-16 Score=160.50 Aligned_cols=264 Identities=11% Similarity=0.033 Sum_probs=227.5
Q ss_pred CChHHHHHHHHHHHHcCChHHHHHHHHHhccCCCCcChhhHHHHHHHHHcccchhhHHHHHHHHHHhCCccchhHHhHHH
Q 036237 279 RDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLI 358 (689)
Q Consensus 279 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li 358 (689)
.++..+..+...+...|++++|+++|+++.+.. +.+...+..++..+...|++++|..++..+.+.. +.+..++..+.
T Consensus 20 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 97 (330)
T 3hym_B 20 ENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVG 97 (330)
T ss_dssp CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHH
Confidence 366678888899999999999999999998753 2344556667788899999999999999999875 44677888899
Q ss_pred hhHHhcC-CHHHHHHHHHhcCC---CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHH
Q 036237 359 QMYSKCG-SIESALTVFRAISK---KKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVN 434 (689)
Q Consensus 359 ~~~~~~g-~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~ 434 (689)
..|...| ++++|.+.|+++.. .+...|..+...|...|++++|++.|+++.+.. +.+...+..+...+...|+++
T Consensus 98 ~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~ 176 (330)
T 3hym_B 98 CYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTNNSK 176 (330)
T ss_dssp HHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTTCHH
T ss_pred HHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHhhHH
Confidence 9999999 99999999998875 356789999999999999999999999999853 223567777889999999999
Q ss_pred HHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCC-----------CCCCHHHHHHHHHHHHhcCChHH
Q 036237 435 DGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMP-----------MRPNFVIWMSLLSGARNHGNKDI 503 (689)
Q Consensus 435 ~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~-----------~~p~~~~~~~ll~~~~~~g~~~~ 503 (689)
+|...++.+.. ..+.+...+..+...|.+.|++++|...++++- ...+..+|..+...+...|++++
T Consensus 177 ~A~~~~~~al~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 254 (330)
T 3hym_B 177 LAERFFSQALS--IAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAE 254 (330)
T ss_dssp HHHHHHHHHHT--TCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHH--hCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHH
Confidence 99999999984 233447889999999999999999999998761 13346789999999999999999
Q ss_pred HHHHHHHHhhcCCCCchhHHHHHHHHHhcCCcchHHHHHHHHHh
Q 036237 504 GEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKK 547 (689)
Q Consensus 504 a~~~~~~~~~~~p~~~~~~~~L~~~~~~~g~~~~A~~~~~~m~~ 547 (689)
|+..+++++++.|+++.++..++.+|.+.|++++|.+.+++..+
T Consensus 255 A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 298 (330)
T 3hym_B 255 ALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALG 298 (330)
T ss_dssp HHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTT
T ss_pred HHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHc
Confidence 99999999999999999999999999999999999999987654
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.74 E-value=2.3e-15 Score=164.62 Aligned_cols=407 Identities=10% Similarity=0.045 Sum_probs=288.3
Q ss_pred CCChhhHHHHHHHHHhCCCchHHHHHHHHhHhCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHH
Q 036237 84 HPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSL 163 (689)
Q Consensus 84 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l 163 (689)
+.+...|..++. +.+.|++++|..+|+++.+.. +-+...|...+..+.+.|+++.|..+|+++++.. |++..|..+
T Consensus 10 P~~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~-P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~--p~~~lw~~~ 85 (530)
T 2ooe_A 10 PYDLDAWSILIR-EAQNQPIDKARKTYERLVAQF-PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV--LHIDLWKCY 85 (530)
T ss_dssp TTCHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC--CCHHHHHHH
T ss_pred CCCHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CChHHHHHH
Confidence 347789999998 578999999999999999762 3355678889999999999999999999999874 677788877
Q ss_pred HHH-HHhcCChHHHHH----HHhhCC------CCCeehHHHHHHHHHh---------CCChHHHHHHHhhCCC-CCc---
Q 036237 164 VSM-YAKFGEIDLGRR----VFDAMD------DKDLVSWNCLIDGYVK---------KGEVEVAMKLFDEMPD-RDL--- 219 (689)
Q Consensus 164 i~~-~~~~g~~~~A~~----~~~~m~------~~~~~~~~~li~~~~~---------~g~~~~A~~~~~~m~~-~d~--- 219 (689)
+.. ....|+++.|.+ +|+... ..+...|...+....+ .|+++.|..+|++..+ |+.
T Consensus 86 ~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~ 165 (530)
T 2ooe_A 86 LSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIE 165 (530)
T ss_dssp HHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHH
T ss_pred HHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHH
Confidence 753 345688887765 666542 1356678888877665 7899999999999876 322
Q ss_pred chHHHHHHHHHhCCChHHHHHHHhhcCcCCcchHHHHHHHHHhcCCHHHHHHHHHh-------cC------CCC------
Q 036237 220 FSWTCLVDGFSKCGKVEIAREIFYRMPNRNLVSWNAMINGYMKAGDVDSACELFDD-------ME------IRD------ 280 (689)
Q Consensus 220 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~-------~~------~~~------ 280 (689)
..|..........|. ..+..++.. +.++++.|..++.. +. .++
T Consensus 166 ~~~~~~~~~e~~~~~-~~~~~~l~~-----------------~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~ 227 (530)
T 2ooe_A 166 QLWRDYNKYEEGINI-HLAKKMIED-----------------RSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEA 227 (530)
T ss_dssp HHHHHHHHHHHHHCH-HHHHHHHHT-----------------THHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHH
T ss_pred HHHHHHHHHHHhhch-hHHHHHHHH-----------------hhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHH
Confidence 123222211111110 111111111 22344555544443 11 111
Q ss_pred --hHHHHHHHHHHHHc----CCh----HHHHHHHHHhccCCCCcChhhHHHHHHHHHc-------ccchh-------hHH
Q 036237 281 --LITWNSMIAGYELN----GRF----MEALELLETMLIGDVLPNDATLVSALSAVAG-------LAVLN-------KGR 336 (689)
Q Consensus 281 --~~~~~~li~~~~~~----g~~----~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~-------~~~~~-------~a~ 336 (689)
...|...+...... ++. ++|+.+|++.+... +-+...|......+.+ .|+++ +|.
T Consensus 228 ~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~ 306 (530)
T 2ooe_A 228 QQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAA 306 (530)
T ss_dssp HHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHH
Confidence 24666655433332 222 37778888887642 2345556666665554 68876 888
Q ss_pred HHHHHHHHhCCccchhHHhHHHhhHHhcCCHHHHHHHHHhcCC--C-Ch-hhHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 036237 337 WMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISK--K-KV-GHWTAMIVGLGMHGMATQALDLFNKMCRMG 412 (689)
Q Consensus 337 ~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~-~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 412 (689)
.+++..++.-.+.+..++..++..+.+.|++++|.++|+++.. | +. ..|...+..+.+.|+.++|.++|++..+.
T Consensus 307 ~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~- 385 (530)
T 2ooe_A 307 NIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED- 385 (530)
T ss_dssp HHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-
T ss_pred HHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhc-
Confidence 9998888633455688899999999999999999999998764 3 33 47999999999999999999999999874
Q ss_pred CCCC-HHHHHHHHHH-HhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC----CCCCC--
Q 036237 413 MKPT-AITFIGVLNA-CSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESM----PMRPN-- 484 (689)
Q Consensus 413 ~~p~-~~t~~~ll~a-~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~----~~~p~-- 484 (689)
.|+ ...|...... +...|+.++|..+|+...+.. +.+...|..+++.+.+.|+.++|..+|++. +..|+
T Consensus 386 -~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~--p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~ 462 (530)
T 2ooe_A 386 -ARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY--GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKS 462 (530)
T ss_dssp -TTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH--TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGC
T ss_pred -cCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHC--CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHH
Confidence 343 2333332222 335899999999999998542 234788999999999999999999999986 22332
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCC
Q 036237 485 FVIWMSLLSGARNHGNKDIGEYAANNLIKVAPD 517 (689)
Q Consensus 485 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 517 (689)
...|...+.....+|+.+.+..+.+++.+..|+
T Consensus 463 ~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~~p~ 495 (530)
T 2ooe_A 463 GEIWARFLAFESNIGDLASILKVEKRRFTAFRE 495 (530)
T ss_dssp HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCch
Confidence 458988898889999999999999999998884
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.73 E-value=2.7e-16 Score=163.11 Aligned_cols=289 Identities=13% Similarity=0.032 Sum_probs=175.7
Q ss_pred hCCChHHHHH-HHhhCCC--C-----CcchHHHHHHHHHhCCChHHHHHHHhhcCc---CCcchHHHHHHHHHhcCCHHH
Q 036237 200 KKGEVEVAMK-LFDEMPD--R-----DLFSWTCLVDGFSKCGKVEIAREIFYRMPN---RNLVSWNAMINGYMKAGDVDS 268 (689)
Q Consensus 200 ~~g~~~~A~~-~~~~m~~--~-----d~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~ 268 (689)
..|++++|+. .|++... | +...+..+...+...|++++|...|+++.+ .+..++..+...|.+.|++++
T Consensus 37 ~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~ 116 (368)
T 1fch_A 37 WLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELL 116 (368)
T ss_dssp ---------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHH
Confidence 3466777776 6665543 1 345677777777778888888887777765 235677778888888888888
Q ss_pred HHHHHHhcC---CCChHHHHHHHHHHHHcCChHHHHHHHHHhccCCCCcChhhHHHHHHHHHcccchhhHHHHHHHHHHh
Q 036237 269 ACELFDDME---IRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKN 345 (689)
Q Consensus 269 A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~ 345 (689)
|...|+++. ..+..+|..+...|...|++++|++.|+++.... |+.......+... .
T Consensus 117 A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~------~------------ 176 (368)
T 1fch_A 117 AISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYT--PAYAHLVTPAEEG------A------------ 176 (368)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS--TTTGGGCC------------------------
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cCcHHHHHHHHHH------h------------
Confidence 888888765 3467889999999999999999999999998754 3322211100000 0
Q ss_pred CCccchhHHhHHHhhHHhcCCHHHHHHHHHhcCC--C---ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHH
Q 036237 346 GFVVDGVLGTLLIQMYSKCGSIESALTVFRAISK--K---KVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKP-TAIT 419 (689)
Q Consensus 346 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t 419 (689)
+..........+...+ ..|++++|...|+++.. | +...|..+...|.+.|++++|+..|+++... .| +..+
T Consensus 177 ~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~~~~~~~ 253 (368)
T 1fch_A 177 GGAGLGPSKRILGSLL-SDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV--RPNDYLL 253 (368)
T ss_dssp ---------CTTHHHH-HHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHH
T ss_pred hhhcccHHHHHHHHHh-hcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCCHHH
Confidence 0000000111122222 55566666666655542 2 3456666666777777777777777776653 33 3456
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCC-CCC------------CHH
Q 036237 420 FIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMP-MRP------------NFV 486 (689)
Q Consensus 420 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~p------------~~~ 486 (689)
+..+...+...|++++|...|+.+.+. .+.+...+..+..+|.+.|++++|...++++- ..| ...
T Consensus 254 ~~~l~~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 331 (368)
T 1fch_A 254 WNKLGATLANGNQSEEAVAAYRRALEL--QPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSEN 331 (368)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhH
Confidence 666667777777777777777776632 12235666777777777777777777776651 111 156
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHhh
Q 036237 487 IWMSLLSGARNHGNKDIGEYAANNLIK 513 (689)
Q Consensus 487 ~~~~ll~~~~~~g~~~~a~~~~~~~~~ 513 (689)
+|..+..++...|+.++|..++++.++
T Consensus 332 ~~~~l~~~~~~~g~~~~A~~~~~~~l~ 358 (368)
T 1fch_A 332 IWSTLRLALSMLGQSDAYGAADARDLS 358 (368)
T ss_dssp HHHHHHHHHHHHTCGGGHHHHHTTCHH
T ss_pred HHHHHHHHHHHhCChHhHHHhHHHHHH
Confidence 778888888888888888777766554
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.73 E-value=1e-14 Score=157.63 Aligned_cols=350 Identities=11% Similarity=-0.028 Sum_probs=293.7
Q ss_pred CCeehHHHHHHHHHh----CCChHHHHHHHhhCCC-CCcchHHHHHHHHHh----CCChHHHHHHHhhcCcC-CcchHHH
Q 036237 186 KDLVSWNCLIDGYVK----KGEVEVAMKLFDEMPD-RDLFSWTCLVDGFSK----CGKVEIAREIFYRMPNR-NLVSWNA 255 (689)
Q Consensus 186 ~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~-~d~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~-~~~~~~~ 255 (689)
.+..++..+-..|.. .+++++|+..|++..+ .+...+..+...|.. .++.++|...|++..+. ++..+..
T Consensus 37 g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~ 116 (490)
T 2xm6_A 37 GEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQGYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKGLPQAQQN 116 (490)
T ss_dssp TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 355556666666666 7899999999998765 467788889999988 99999999999998875 4777888
Q ss_pred HHHHHHh----cCCHHHHHHHHHhcCCC-ChHHHHHHHHHHHH----cCChHHHHHHHHHhccCCCCcChhhHHHHHHHH
Q 036237 256 MINGYMK----AGDVDSACELFDDMEIR-DLITWNSMIAGYEL----NGRFMEALELLETMLIGDVLPNDATLVSALSAV 326 (689)
Q Consensus 256 li~~~~~----~g~~~~A~~~~~~~~~~-~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~ 326 (689)
|..+|.. .+++++|.+.|++..+. ++.++..|...|.. .++.++|++.|++..+.| +...+..+...+
T Consensus 117 Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y 193 (490)
T 2xm6_A 117 LGVMYHEGNGVKVDKAESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWSCNQLGYMY 193 (490)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHH
T ss_pred HHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHH
Confidence 9999998 88999999999987654 67788889998988 789999999999998765 566677777777
Q ss_pred Hc----ccchhhHHHHHHHHHHhCCccchhHHhHHHhhHHh----cCCHHHHHHHHHhcCC-CChhhHHHHHHHHHH---
Q 036237 327 AG----LAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSK----CGSIESALTVFRAISK-KKVGHWTAMIVGLGM--- 394 (689)
Q Consensus 327 ~~----~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~--- 394 (689)
.. .++.++|...+....+.| +...+..|..+|.. .++.++|.+.|++..+ .+...+..+...|..
T Consensus 194 ~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~g~~ 270 (490)
T 2xm6_A 194 SRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQGNSIAQFRLGYILEQGLA 270 (490)
T ss_dssp HHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTT
T ss_pred hcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCC
Confidence 76 789999999999999876 56677788888886 8999999999998765 567788888888888
Q ss_pred -cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc-----CcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcC-
Q 036237 395 -HGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHA-----GLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTG- 467 (689)
Q Consensus 395 -~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~-----g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g- 467 (689)
.+++++|++.|++..+.| +...+..+...+... ++.++|..+|+...+. -+...+..|..+|.+.|
T Consensus 271 ~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~----~~~~a~~~lg~~y~~~g~ 343 (490)
T 2xm6_A 271 GAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQ----GDATAQANLGAIYFRLGS 343 (490)
T ss_dssp SSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHSCC
T ss_pred CCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhc----CCHHHHHHHHHHHHhCCC
Confidence 899999999999998765 455666777777776 8999999999999852 34567888899998877
Q ss_pred --CHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHhhcCCCCchhHHHHHHHHHh----cCCcch
Q 036237 468 --YLEEAKSTIESMPMRPNFVIWMSLLSGARN----HGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAA----AGQWDK 537 (689)
Q Consensus 468 --~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~~~~----~g~~~~ 537 (689)
++++|.+.+++.-...++..+..|...+.. .+++++|...++++.+.. ++.++..|+.+|.. .+++++
T Consensus 344 ~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~Lg~~y~~g~g~~~d~~~ 421 (490)
T 2xm6_A 344 EEEHKKAVEWFRKAAAKGEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG--LSAAQVQLGEIYYYGLGVERDYVQ 421 (490)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHH
T ss_pred cccHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHcCCCCCCCHHH
Confidence 789999999987434678899999999998 899999999999998864 57899999999998 899999
Q ss_pred HHHHHHHHHhCCC
Q 036237 538 VSEVREMMKKRGF 550 (689)
Q Consensus 538 A~~~~~~m~~~~~ 550 (689)
|...+++..+.+.
T Consensus 422 A~~~~~~A~~~~~ 434 (490)
T 2xm6_A 422 AWAWFDTASTNDM 434 (490)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHCCC
Confidence 9999999988663
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.72 E-value=3.5e-15 Score=149.05 Aligned_cols=267 Identities=10% Similarity=0.014 Sum_probs=199.6
Q ss_pred HHhcCCHHHHHHHHHhcCCCCh----HHHHHHHHHHHHcCChHHHHHHHHHhccCCCCcChhhHHHHHHHHHcccchhhH
Q 036237 260 YMKAGDVDSACELFDDMEIRDL----ITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKG 335 (689)
Q Consensus 260 ~~~~g~~~~A~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a 335 (689)
....|++..|+..++.....++ ...-.+..+|...|++++|+..++.. -.|+..++..+...+...++.+.|
T Consensus 9 ~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~----~~~~~~a~~~la~~~~~~~~~~~A 84 (291)
T 3mkr_A 9 AFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPS----SAPELQAVRMFAEYLASHSRRDAI 84 (291)
T ss_dssp HHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTT----SCHHHHHHHHHHHHHHCSTTHHHH
T ss_pred HHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhccc----CChhHHHHHHHHHHHcCCCcHHHH
Confidence 4456777777777766554332 23345567777777777777655431 345556666666777777777777
Q ss_pred HHHHHHHHHhCC-ccchhHHhHHHhhHHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC
Q 036237 336 RWMHSYIVKNGF-VVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMK 414 (689)
Q Consensus 336 ~~i~~~~~~~g~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~ 414 (689)
.+.++.++..+. +.+...+..+...|...|++++|.+.|++ ..+...+..++..|.+.|++++|.+.|+++.+. .
T Consensus 85 ~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~--~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~--~ 160 (291)
T 3mkr_A 85 VAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ--GDSLECMAMTVQILLKLDRLDLARKELKKMQDQ--D 160 (291)
T ss_dssp HHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT--CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--C
T ss_pred HHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--C
Confidence 777777777664 33566677778899999999999999998 567889999999999999999999999999985 5
Q ss_pred CCHHHH---HHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHH
Q 036237 415 PTAITF---IGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESM-PMRP-NFVIWM 489 (689)
Q Consensus 415 p~~~t~---~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~ 489 (689)
|+.... ...+..+...|++++|..+|+++... .+.+...++.+..+|.+.|++++|...++++ ...| ++.+|.
T Consensus 161 p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~--~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~ 238 (291)
T 3mkr_A 161 EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK--CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLI 238 (291)
T ss_dssp TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence 665322 12233444569999999999999964 4556889999999999999999999999986 3344 677899
Q ss_pred HHHHHHHhcCChHH-HHHHHHHHhhcCCCCchhHHHHHHHHHhcCCcchHHH
Q 036237 490 SLLSGARNHGNKDI-GEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSE 540 (689)
Q Consensus 490 ~ll~~~~~~g~~~~-a~~~~~~~~~~~p~~~~~~~~L~~~~~~~g~~~~A~~ 540 (689)
.++..+...|+.++ +..+++++++++|+++.+. +...+.+.++++..
T Consensus 239 ~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~~----d~~~~~~~fd~~~~ 286 (291)
T 3mkr_A 239 NLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIK----EYRAKENDFDRLVL 286 (291)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHH----HHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHhCCCChHHH----HHHHHHHHHHHHHH
Confidence 99999999999875 6789999999999987543 34455555555443
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.70 E-value=5.6e-16 Score=160.72 Aligned_cols=256 Identities=13% Similarity=0.000 Sum_probs=175.1
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHhcCC---CChHHHHHHHHHHHHcCChHHHHHHHHHhccCCCCcChhhHHHHHHHHH
Q 036237 251 VSWNAMINGYMKAGDVDSACELFDDMEI---RDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVA 327 (689)
Q Consensus 251 ~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~ 327 (689)
..+..+...|.+.|++++|...|+++.. .+..+|..+...|...|++++|+..|+++.+
T Consensus 66 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~------------------ 127 (365)
T 4eqf_A 66 PGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLE------------------ 127 (365)
T ss_dssp TTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH------------------
T ss_pred hHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh------------------
Confidence 3455556666666666666666655542 2445555666666666666666666655554
Q ss_pred cccchhhHHHHHHHHHHhCCccchhHHhHHHhhHHhcCCHHHHHHHHHhcCCC-------------ChhhHHHHHHHHHH
Q 036237 328 GLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKK-------------KVGHWTAMIVGLGM 394 (689)
Q Consensus 328 ~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-------------~~~~~~~li~~~~~ 394 (689)
.. +.+..++..+...|...|++++|.+.|+++... ....+..+...|..
T Consensus 128 -----------------~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~ 189 (365)
T 4eqf_A 128 -----------------LQ-PNNLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVD 189 (365)
T ss_dssp -----------------HC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------C
T ss_pred -----------------cC-CCCHHHHHHHHHHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhh
Confidence 32 123444555555555556666665555555431 12234455778888
Q ss_pred cCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHH
Q 036237 395 HGMATQALDLFNKMCRMGMK-PTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAK 473 (689)
Q Consensus 395 ~g~~~~A~~l~~~m~~~g~~-p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 473 (689)
.|++++|++.|+++.+.... ++..++..+...+...|++++|...|+.+.+. .+.+...|..+..+|.+.|++++|.
T Consensus 190 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~ 267 (365)
T 4eqf_A 190 SSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTV--RPEDYSLWNRLGATLANGDRSEEAV 267 (365)
T ss_dssp CHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred hhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 99999999999998885311 14678888889999999999999999998852 2345788999999999999999999
Q ss_pred HHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCC------------CchhHHHHHHHHHhcCCcchHH
Q 036237 474 STIESM-PMRP-NFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPD------------TIGCYVVLSNIYAAAGQWDKVS 539 (689)
Q Consensus 474 ~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~------------~~~~~~~L~~~~~~~g~~~~A~ 539 (689)
..++++ ...| +..+|..+...+...|++++|...+++++++.|+ +...+..|+.++...|+.+.+.
T Consensus 268 ~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 347 (365)
T 4eqf_A 268 EAYTRALEIQPGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQ 347 (365)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHH
Confidence 999886 2334 5788999999999999999999999999998876 3677899999999999999887
Q ss_pred HHHHH
Q 036237 540 EVREM 544 (689)
Q Consensus 540 ~~~~~ 544 (689)
.+.++
T Consensus 348 ~~~~~ 352 (365)
T 4eqf_A 348 AANLG 352 (365)
T ss_dssp HHHTT
T ss_pred HHHHh
Confidence 76653
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.70 E-value=6.6e-16 Score=160.19 Aligned_cols=229 Identities=9% Similarity=0.022 Sum_probs=187.5
Q ss_pred hhhHHHHHHHHHcccchhhHHHHHHHHHHhCCccchhHHhHHHhhHHhcCCHHHHHHHHHhcCC---CChhhHHHHHHHH
Q 036237 316 DATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISK---KKVGHWTAMIVGL 392 (689)
Q Consensus 316 ~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~ 392 (689)
...+......+...|++++|..++..+++.. +.+..++..+...|.+.|++++|.+.|+++.. .+..+|..+...|
T Consensus 65 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 143 (365)
T 4eqf_A 65 WPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSY 143 (365)
T ss_dssp CTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 3446666667777777777777777777664 34677888999999999999999999998764 4678999999999
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCHH-----------HHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHH
Q 036237 393 GMHGMATQALDLFNKMCRMGMKPTAI-----------TFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVD 461 (689)
Q Consensus 393 ~~~g~~~~A~~l~~~m~~~g~~p~~~-----------t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 461 (689)
...|++++|+..|+++.+. .|+.. .+..+...+...|++++|..+|+++.....-.++...+..+..
T Consensus 144 ~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~ 221 (365)
T 4eqf_A 144 TNTSHQQDACEALKNWIKQ--NPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGV 221 (365)
T ss_dssp HHTTCHHHHHHHHHHHHHH--CHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHH
T ss_pred HccccHHHHHHHHHHHHHh--CccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHH
Confidence 9999999999999999873 44422 2234577889999999999999999964322226889999999
Q ss_pred HHHhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCcchHH
Q 036237 462 ILCRTGYLEEAKSTIESM-PMR-PNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVS 539 (689)
Q Consensus 462 ~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~~~~~g~~~~A~ 539 (689)
.|.+.|++++|.+.++++ ... .+..+|..+...+...|++++|+..+++++++.|+++.++..++.+|.+.|++++|.
T Consensus 222 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 301 (365)
T 4eqf_A 222 LFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAV 301 (365)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHH
Confidence 999999999999999986 233 468899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHh
Q 036237 540 EVREMMKK 547 (689)
Q Consensus 540 ~~~~~m~~ 547 (689)
..++++.+
T Consensus 302 ~~~~~al~ 309 (365)
T 4eqf_A 302 SNFLTALS 309 (365)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99999875
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.69 E-value=2.6e-15 Score=149.97 Aligned_cols=246 Identities=7% Similarity=-0.009 Sum_probs=202.9
Q ss_pred HHHHHHcCChHHHHHHHHHhccCCCCcCh--hhHHHHHHHHHcccchhhHHHHHHHHHHhCCccchhHHhHHHhhHHhcC
Q 036237 288 IAGYELNGRFMEALELLETMLIGDVLPND--ATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCG 365 (689)
Q Consensus 288 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g 365 (689)
|.-....|++.+|+..+++.... .|+. .....+..++...|+++.|...++. .-+|+...+..+...|...|
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~~~--~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~ 79 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVKPS--SPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHS 79 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCCC--SHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCST
T ss_pred HHHHHHHHHHHHHHHHHHhcccC--CchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCC
Confidence 34456789999999999887654 3443 3556678899999999999875543 24567788888999999999
Q ss_pred CHHHHHHHHHhcCC----C-ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHH
Q 036237 366 SIESALTVFRAISK----K-KVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYF 440 (689)
Q Consensus 366 ~~~~A~~~~~~~~~----~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~ 440 (689)
+.++|.+.++++.. | +...+..+...|.+.|++++|++.|++ ..+...+..+...+.+.|++++|.+.|
T Consensus 80 ~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l 153 (291)
T 3mkr_A 80 RRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKEL 153 (291)
T ss_dssp THHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 99999999998642 3 566788888999999999999999987 456778888999999999999999999
Q ss_pred HHhHHhcCCCCChhH---HHHHHHHHHhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcC
Q 036237 441 NMMINDYGIEPTIEH---YGCLVDILCRTGYLEEAKSTIESMP--MRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVA 515 (689)
Q Consensus 441 ~~~~~~~~~~p~~~~---~~~li~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 515 (689)
+.+.+. .|+... ...++..+...|++++|..+|+++- .+.+...|+.+..++...|++++|+..++++++++
T Consensus 154 ~~~~~~---~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~ 230 (291)
T 3mkr_A 154 KKMQDQ---DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD 230 (291)
T ss_dssp HHHHHH---CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHhh---CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 999853 466321 2334455666799999999999872 34578899999999999999999999999999999
Q ss_pred CCCchhHHHHHHHHHhcCCcch-HHHHHHHHHhC
Q 036237 516 PDTIGCYVVLSNIYAAAGQWDK-VSEVREMMKKR 548 (689)
Q Consensus 516 p~~~~~~~~L~~~~~~~g~~~~-A~~~~~~m~~~ 548 (689)
|+++.++..++.++...|++++ +.++++++.+.
T Consensus 231 p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~ 264 (291)
T 3mkr_A 231 SGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDA 264 (291)
T ss_dssp TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 9999999999999999999976 57888888763
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.69 E-value=6.1e-15 Score=158.61 Aligned_cols=355 Identities=10% Similarity=-0.009 Sum_probs=199.1
Q ss_pred chhHHHHHHHHHHhcCChHHHHHHHhhCCC------------CCeehHHHHHHHHHhCCChHHHHHHHhhCCCCCcchHH
Q 036237 156 DKFVLSSLVSMYAKFGEIDLGRRVFDAMDD------------KDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDRDLFSWT 223 (689)
Q Consensus 156 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~------------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~d~~~~~ 223 (689)
....||.|...|...|++++|++.|++..+ ...++|+.+...|...|++++|...+++..+
T Consensus 50 ~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~------- 122 (472)
T 4g1t_A 50 KATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKH------- 122 (472)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-------
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH-------
Confidence 345677788888888888888777764321 1223455555555555555555544443211
Q ss_pred HHHHHHHhCCChHHHHHHHhhcCc----CCcchHHHHHHHHHhc--CCHHHHHHHHHhcCC---CChHHHHHHHHH---H
Q 036237 224 CLVDGFSKCGKVEIAREIFYRMPN----RNLVSWNAMINGYMKA--GDVDSACELFDDMEI---RDLITWNSMIAG---Y 291 (689)
Q Consensus 224 ~li~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~--g~~~~A~~~~~~~~~---~~~~~~~~li~~---~ 291 (689)
+...... ....++..+..++.+. +++++|...|++..+ .++..+..+... +
T Consensus 123 -----------------i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l 185 (472)
T 4g1t_A 123 -----------------VCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRL 185 (472)
T ss_dssp -----------------HHHHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHH
T ss_pred -----------------HhHhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Confidence 0000000 0123344444444433 245666666665442 234444444433 2
Q ss_pred HHcCChHHHHHHHHHhccCCCCcC-hhhHHHHHHHHHc----ccchhhHHHHHHHHHHhCCccchhHHhHHHhhHHhcCC
Q 036237 292 ELNGRFMEALELLETMLIGDVLPN-DATLVSALSAVAG----LAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGS 366 (689)
Q Consensus 292 ~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~----~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~ 366 (689)
...++.++|++.+++.++. .|+ ...+..+...+.. .++.++|.+.+..+.+.. +.+..++..+...|.+.|+
T Consensus 186 ~~~~~~~~al~~~~~al~l--~p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~ 262 (472)
T 4g1t_A 186 DNWPPSQNAIDPLRQAIRL--NPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDE 262 (472)
T ss_dssp HHSCCCCCTHHHHHHHHHH--CSSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTC
T ss_pred cCchHHHHHHHHHHHHhhc--CCcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCc
Confidence 3345666677766666543 232 2333333333332 345666777776666654 3345566667777777777
Q ss_pred HHHHHHHHHhcCC---CChhhHHHHHHHHHH-------------------cCCHHHHHHHHHHHHHCCCCCC-HHHHHHH
Q 036237 367 IESALTVFRAISK---KKVGHWTAMIVGLGM-------------------HGMATQALDLFNKMCRMGMKPT-AITFIGV 423 (689)
Q Consensus 367 ~~~A~~~~~~~~~---~~~~~~~~li~~~~~-------------------~g~~~~A~~l~~~m~~~g~~p~-~~t~~~l 423 (689)
+++|.+.|++..+ .+..+|..+...|.. .+..++|+..|++..+. .|+ ..++..+
T Consensus 263 ~~~A~~~~~~al~~~p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~l 340 (472)
T 4g1t_A 263 PDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEA--NDNLFRVCSIL 340 (472)
T ss_dssp HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHH--CTTTCCCHHHH
T ss_pred hHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhc--CCchhhhhhhH
Confidence 7777777776653 234455555554432 23356788888887763 343 4467788
Q ss_pred HHHHhccCcHHHHHHHHHHhHHhcCCCCChh----HHHHHHH-HHHhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHh
Q 036237 424 LNACSHAGLVNDGRRYFNMMINDYGIEPTIE----HYGCLVD-ILCRTGYLEEAKSTIESM-PMRPNFVIWMSLLSGARN 497 (689)
Q Consensus 424 l~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~----~~~~li~-~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~ll~~~~~ 497 (689)
...+...|++++|...|++... ..|+.. .+..+.. .+...|++++|+..+++. .+.|+...+...
T Consensus 341 g~~~~~~~~~~~A~~~~~kaL~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~~------ 411 (472)
T 4g1t_A 341 ASLHALADQYEEAEYYFQKEFS---KELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKM------ 411 (472)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH---SCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHHH------
T ss_pred HHHHHHhccHHHHHHHHHHHHh---cCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHH------
Confidence 8889999999999999998874 234322 2333333 235778999999988875 455665433322
Q ss_pred cCChHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCcchHHHHHHHHHhCCCc
Q 036237 498 HGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFR 551 (689)
Q Consensus 498 ~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~~~~~g~~~~A~~~~~~m~~~~~~ 551 (689)
.+.+..++++.++.+|+++.++..|+.+|...|++++|.+.+++..+.|-.
T Consensus 412 ---~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~ 462 (472)
T 4g1t_A 412 ---KDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSL 462 (472)
T ss_dssp ---HHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC---------------
T ss_pred ---HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Confidence 344566778888899999999999999999999999999999998876543
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.68 E-value=2.2e-15 Score=153.18 Aligned_cols=256 Identities=11% Similarity=-0.027 Sum_probs=177.3
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHhcCC---CChHHHHHHHHHHHHcCChHHHHHHHHHhccCCCCcChhhHHHHHHHHH
Q 036237 251 VSWNAMINGYMKAGDVDSACELFDDMEI---RDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVA 327 (689)
Q Consensus 251 ~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~ 327 (689)
..+..+...+...|++++|..+|+++.. .+...|..+...+...|++++|+..|+++.+
T Consensus 22 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~------------------ 83 (327)
T 3cv0_A 22 ENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARM------------------ 83 (327)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH------------------
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh------------------
Confidence 3344555555555666666555555432 2444555555555555555555555555544
Q ss_pred cccchhhHHHHHHHHHHhCCccchhHHhHHHhhHHhcCCHHHHHHHHHhcCCC---ChhhHHHH--------------HH
Q 036237 328 GLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKK---KVGHWTAM--------------IV 390 (689)
Q Consensus 328 ~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l--------------i~ 390 (689)
.. +.+..++..+...|...|++++|.+.|+++... +...+..+ ..
T Consensus 84 -----------------~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (327)
T 3cv0_A 84 -----------------LD-PKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSED 145 (327)
T ss_dssp -----------------HC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTTTC--------------------
T ss_pred -----------------cC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHh
Confidence 32 223344444555555555555555555544321 12222222 22
Q ss_pred -HHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCH
Q 036237 391 -GLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYL 469 (689)
Q Consensus 391 -~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~ 469 (689)
.+...|++++|++.++++.+.. +.+...+..+...+...|++++|...++.+... .+.+...+..+...|.+.|++
T Consensus 146 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~ 222 (327)
T 3cv0_A 146 FFFAAPNEYRECRTLLHAALEMN-PNDAQLHASLGVLYNLSNNYDSAAANLRRAVEL--RPDDAQLWNKLGATLANGNRP 222 (327)
T ss_dssp CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHcccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCH
Confidence 3667788899999999988743 335667888888899999999999999988842 233477889999999999999
Q ss_pred HHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCC------------CchhHHHHHHHHHhcCCc
Q 036237 470 EEAKSTIESM-PMR-PNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPD------------TIGCYVVLSNIYAAAGQW 535 (689)
Q Consensus 470 ~~A~~~~~~~-~~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~------------~~~~~~~L~~~~~~~g~~ 535 (689)
++|...++++ ... .+..+|..+...+...|++++|...++++++..|+ ++..+..++.+|.+.|++
T Consensus 223 ~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 302 (327)
T 3cv0_A 223 QEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRP 302 (327)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCH
Confidence 9999999886 223 36788999999999999999999999999999998 688999999999999999
Q ss_pred chHHHHHHHH
Q 036237 536 DKVSEVREMM 545 (689)
Q Consensus 536 ~~A~~~~~~m 545 (689)
++|..++++.
T Consensus 303 ~~A~~~~~~~ 312 (327)
T 3cv0_A 303 DLVELTYAQN 312 (327)
T ss_dssp HHHHHHTTCC
T ss_pred HHHHHHHHHH
Confidence 9999988643
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.64 E-value=2.2e-16 Score=173.49 Aligned_cols=132 Identities=10% Similarity=0.111 Sum_probs=113.4
Q ss_pred CccchhHHhHHHhhHHhcCCHHHHHHHHHhcC-------CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHH
Q 036237 347 FVVDGVLGTLLIQMYSKCGSIESALTVFRAIS-------KKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAIT 419 (689)
Q Consensus 347 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~-------~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t 419 (689)
...-..+||+||++|+++|++++|.++|++|. .||+++||+||.+|++.|+.++|.++|++|.+.|+.||.+|
T Consensus 123 ~~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvT 202 (1134)
T 3spa_A 123 LSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLS 202 (1134)
T ss_dssp CCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHH
T ss_pred HHhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHH
Confidence 34456789999999999999999999997764 47999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccCc-HHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC
Q 036237 420 FIGVLNACSHAGL-VNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESM 479 (689)
Q Consensus 420 ~~~ll~a~~~~g~-~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 479 (689)
|+++|.++++.|. .++|.++|++|.. .|+.||..+|++++....+.+-++...++...+
T Consensus 203 YntLI~glcK~G~~~e~A~~Ll~EM~~-kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv~P~f 262 (1134)
T 3spa_A 203 YAAALQCMGRQDQDAGTIERCLEQMSQ-EGLKLQALFTAVLLSEEDRATVLKAVHKVKPTF 262 (1134)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHHHH-HTCCSHHHHHHSCCCHHHHHHHHHHHGGGCCCC
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHH-cCCCCChhhcccccChhhHHHHHHHHHHhCccc
Confidence 9999999999987 5788999999995 499999999999998888876666665554444
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.63 E-value=1.1e-16 Score=175.85 Aligned_cols=149 Identities=13% Similarity=0.096 Sum_probs=126.9
Q ss_pred CchHHHHHhhcccccCCCCHHHHHHHHhcccC------CCChhhHHHHHHHHHhCCCchHHHHHHHHhHhCCCCCCcccH
Q 036237 52 HSGISSRLLSLYVDPHINNLHYARSIFDRILQ------HPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTL 125 (689)
Q Consensus 52 ~~~~~~~ll~~~~~~~~g~~~~A~~~f~~~~~------~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~ 125 (689)
-..+||+||++|++ +|++++|..+|++|.. .||+++||+||.+|++.|++++|.++|++|.+.|+.||.+||
T Consensus 126 ~~~TynaLIdglcK--~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTY 203 (1134)
T 3spa_A 126 QQQRLLAFFKCCLL--TDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSY 203 (1134)
T ss_dssp HHHHHHHHHHHHHH--HTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred HHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHH
Confidence 34689999999999 9999999999987642 699999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCh-HHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhhCCCC-----CeehHHHHHHHHH
Q 036237 126 PCVIKGAARLGAI-KEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDK-----DLVSWNCLIDGYV 199 (689)
Q Consensus 126 ~~ll~~~~~~~~~-~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----~~~~~~~li~~~~ 199 (689)
+++|.++++.|+. +.|.+++++|.+.|+.||..+|++++..+.+.+-++.+.+++..+..+ .+.+-+.|.+.|.
T Consensus 204 ntLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv~P~f~p~~~~~~~~~t~~LL~dl~s 283 (1134)
T 3spa_A 204 AAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYA 283 (1134)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHHGGGCCCCCCCCCCCCCCCCCTTTHHHHC
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHHHHhCcccCCCCCCcccccchHHHHHHHc
Confidence 9999999999985 789999999999999999999999999888876666666665544421 2334455666666
Q ss_pred hCC
Q 036237 200 KKG 202 (689)
Q Consensus 200 ~~g 202 (689)
+.+
T Consensus 284 ~d~ 286 (1134)
T 3spa_A 284 KDG 286 (1134)
T ss_dssp CCS
T ss_pred cCC
Confidence 655
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.63 E-value=2.8e-14 Score=144.94 Aligned_cols=270 Identities=10% Similarity=-0.003 Sum_probs=159.0
Q ss_pred chHHHHHHHHHhCCChHHHHHHHhhcCc---CCcchHHHHHHHHHhcCCHHHHHHHHHhcC---CCChHHHHHHHHHHHH
Q 036237 220 FSWTCLVDGFSKCGKVEIAREIFYRMPN---RNLVSWNAMINGYMKAGDVDSACELFDDME---IRDLITWNSMIAGYEL 293 (689)
Q Consensus 220 ~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~ 293 (689)
..+..+...+...|++++|..+|+++.+ .+..++..+...|.+.|++++|...|+++. ..+..+|..+...|..
T Consensus 22 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~ 101 (327)
T 3cv0_A 22 ENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTN 101 (327)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHH
Confidence 3444555555556666666666655543 234556666667777777777777776654 2366788888899999
Q ss_pred cCChHHHHHHHHHhccCCCCcChhhHHHHH-HHHHcccchhhHHHHHHHHHHhCCccchhHHhHH-Hh-hHHhcCCHHHH
Q 036237 294 NGRFMEALELLETMLIGDVLPNDATLVSAL-SAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLL-IQ-MYSKCGSIESA 370 (689)
Q Consensus 294 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll-~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~l-i~-~~~~~g~~~~A 370 (689)
.|++++|++.|+++.... |+.......+ ..+ ++......+ .. .+...|++++|
T Consensus 102 ~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~A 157 (327)
T 3cv0_A 102 EHNANAALASLRAWLLSQ--PQYEQLGSVNLQAD----------------------VDIDDLNVQSEDFFFAAPNEYREC 157 (327)
T ss_dssp TTCHHHHHHHHHHHHHTS--TTTTTC------------------------------------------CCTTSHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhC--CccHHHHHHHhHHH----------------------HHHHHHHHHHHhHHHHHcccHHHH
Confidence 999999999999888643 3322221111 000 000001111 11 24455555666
Q ss_pred HHHHHhcCC---CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhc
Q 036237 371 LTVFRAISK---KKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDY 447 (689)
Q Consensus 371 ~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~ 447 (689)
.+.|+++.. .+...|..+...|...|++++|++.|+++.+.. +.+..++..+...+...|++++|...|+.+.+.
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~- 235 (327)
T 3cv0_A 158 RTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRALDI- 235 (327)
T ss_dssp HHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-
Confidence 655555432 245566666666666677777777776666532 223456666666666777777777777766632
Q ss_pred CCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-------------CHHHHHHHHHHHHhcCChHHHHHHHHHHhh
Q 036237 448 GIEPTIEHYGCLVDILCRTGYLEEAKSTIESM-PMRP-------------NFVIWMSLLSGARNHGNKDIGEYAANNLIK 513 (689)
Q Consensus 448 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-------------~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 513 (689)
.+.+...+..+...|.+.|++++|.+.++++ ...| +..+|..+..++...|+.+.|...++++++
T Consensus 236 -~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 314 (327)
T 3cv0_A 236 -NPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNVE 314 (327)
T ss_dssp -CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCSH
T ss_pred -CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 1223566666777777777777777777664 1122 255677777777777777777777776665
Q ss_pred cCC
Q 036237 514 VAP 516 (689)
Q Consensus 514 ~~p 516 (689)
..|
T Consensus 315 ~~~ 317 (327)
T 3cv0_A 315 PFA 317 (327)
T ss_dssp HHH
T ss_pred hcc
Confidence 443
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.63 E-value=3.8e-14 Score=152.40 Aligned_cols=376 Identities=9% Similarity=-0.081 Sum_probs=226.6
Q ss_pred CcccHHHHHHHHHhcCChHHHHHHHHHHHHh--------CCCCchhHHHHHHHHHHhcCChHHHHHHHhhCCC-------
Q 036237 121 DNFTLPCVIKGAARLGAIKEGKQIHGLVFKL--------GFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDD------- 185 (689)
Q Consensus 121 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~--------g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~------- 185 (689)
....|+.+...+...|+.++|.+.+.+.++. .-+....+|+.+..+|...|++++|...|++..+
T Consensus 50 ~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~ 129 (472)
T 4g1t_A 50 KATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSS 129 (472)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccc
Confidence 4556888989999999999999999988753 1123356899999999999999999998876531
Q ss_pred C----CeehHHHHHHHHHhC--CChHHHHHHHhhCCC--C-CcchHHHHHHH---HHhCCChHHHHHHHhhcCc---CCc
Q 036237 186 K----DLVSWNCLIDGYVKK--GEVEVAMKLFDEMPD--R-DLFSWTCLVDG---FSKCGKVEIAREIFYRMPN---RNL 250 (689)
Q Consensus 186 ~----~~~~~~~li~~~~~~--g~~~~A~~~~~~m~~--~-d~~~~~~li~~---~~~~g~~~~A~~~~~~~~~---~~~ 250 (689)
+ ...+++.+..++.+. +++++|+..|++..+ | +...+..+..+ +...++.++|++.+++..+ .+.
T Consensus 130 ~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~ 209 (472)
T 4g1t_A 130 PYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQ 209 (472)
T ss_dssp SSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCH
T ss_pred ccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcch
Confidence 1 223455555555543 568899999988764 4 34444444444 4456777788888877765 234
Q ss_pred chHHHHHHHHHh----cCCHHHHHHHHHhcC---CCChHHHHHHHHHHHHcCChHHHHHHHHHhccCCCCcCh-hhHHHH
Q 036237 251 VSWNAMINGYMK----AGDVDSACELFDDME---IRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPND-ATLVSA 322 (689)
Q Consensus 251 ~~~~~li~~~~~----~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~l 322 (689)
.++..+...+.. .|++++|.+.+++.. ..+..+|..+...|...|++++|+..|++..+. .|+. .++..+
T Consensus 210 ~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l 287 (472)
T 4g1t_A 210 YLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEY--IPNNAYLHCQI 287 (472)
T ss_dssp HHHHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHh--CCChHHHHHHH
Confidence 455555544444 456788888888754 346678888888999999999999999888764 3443 333333
Q ss_pred HHHHHcccchhhHHHHHHHHHHhCCccchhHHhHHHhhHHhcCCHHHHHHHHHhcCC---CChhhHHHHHHHHHHcCCHH
Q 036237 323 LSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISK---KKVGHWTAMIVGLGMHGMAT 399 (689)
Q Consensus 323 l~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~ 399 (689)
...+...+....+ . ............+..+.|...|+.... .+..+|..+...|...|+++
T Consensus 288 g~~y~~~~~~~~~---------~-------~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~ 351 (472)
T 4g1t_A 288 GCCYRAKVFQVMN---------L-------RENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYE 351 (472)
T ss_dssp HHHHHHHHHHHHH---------C-------------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHhhh---------H-------HHHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhccHH
Confidence 3333211110000 0 000111111222346677777776653 45678999999999999999
Q ss_pred HHHHHHHHHHHCCCCCCHH--HHHHHHH-HHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHH
Q 036237 400 QALDLFNKMCRMGMKPTAI--TFIGVLN-ACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTI 476 (689)
Q Consensus 400 ~A~~l~~~m~~~g~~p~~~--t~~~ll~-a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 476 (689)
+|++.|++..+....|... .+..+.. ...+.|+.++|+..|++.. .+.|+........ ..+..++
T Consensus 352 ~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal---~i~~~~~~~~~~~---------~~l~~~~ 419 (472)
T 4g1t_A 352 EAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGV---KINQKSREKEKMK---------DKLQKIA 419 (472)
T ss_dssp HHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHH---HSCCCCHHHHHHH---------HHHHHHH
T ss_pred HHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH---hcCcccHHHHHHH---------HHHHHHH
Confidence 9999999998854333221 2233322 3457899999999999988 3566643332222 2233333
Q ss_pred HhC-C-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchhHHHHH
Q 036237 477 ESM-P-MRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLS 526 (689)
Q Consensus 477 ~~~-~-~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~ 526 (689)
++. . .+.++.+|..|...+...|++++|+..|++++++.|.+|.+...++
T Consensus 420 ~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~G 471 (472)
T 4g1t_A 420 KMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWNG 471 (472)
T ss_dssp HHHHHHCC-CTTHHHHHHHHHHHHHHCC------------------------
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcCC
Confidence 332 1 2246779999999999999999999999999999998887665554
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.60 E-value=4e-14 Score=134.89 Aligned_cols=193 Identities=12% Similarity=0.056 Sum_probs=157.0
Q ss_pred ccchhHHhHHHhhHHhcCCHHHHHHHHHhcCC---CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHH
Q 036237 348 VVDGVLGTLLIQMYSKCGSIESALTVFRAISK---KKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPT-AITFIGV 423 (689)
Q Consensus 348 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~l 423 (689)
+++...+..+...+.+.|++++|...|++..+ .+...|..+...+.+.|++++|+..|++..+. .|+ ...+..+
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~l 79 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVAR--TPRYLGGYMVL 79 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHH
Confidence 45667778888899999999999999998765 45678999999999999999999999999884 565 5578888
Q ss_pred HHHHhcc-----------CcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHHHH
Q 036237 424 LNACSHA-----------GLVNDGRRYFNMMINDYGIEPT-IEHYGCLVDILCRTGYLEEAKSTIESM-PMRPNFVIWMS 490 (689)
Q Consensus 424 l~a~~~~-----------g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~ 490 (689)
..++... |++++|+..|++..+ +.|+ ...+..+..+|...|++++|...|++. ....+...|..
T Consensus 80 g~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~---~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 156 (217)
T 2pl2_A 80 SEAYVALYRQAEDRERGKGYLEQALSVLKDAER---VNPRYAPLHLQRGLVYALLGERDKAEASLKQALALEDTPEIRSA 156 (217)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHH
T ss_pred HHHHHHhhhhhhhhcccccCHHHHHHHHHHHHH---hCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHH
Confidence 8889999 999999999999984 3455 788899999999999999999999986 11278889999
Q ss_pred HHHHHHhcCChHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCcchHHHHHHHH
Q 036237 491 LLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMM 545 (689)
Q Consensus 491 ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~~~~~g~~~~A~~~~~~m 545 (689)
+...+...|++++|+..++++++++|+++..+..++.+|...|++++|...+++.
T Consensus 157 la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 157 LAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC--------------
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999988754
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.59 E-value=1.3e-13 Score=134.72 Aligned_cols=218 Identities=10% Similarity=0.022 Sum_probs=165.3
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHhccCCCCcChhhHHHHHHHHHcccchhhHHHHHHHHHHhCCccchhHHhHHHhhH
Q 036237 282 ITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMY 361 (689)
Q Consensus 282 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~ 361 (689)
..|..+...+...|++++|+..|+++.+.. . +..++..+...|
T Consensus 6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~-----------------------------------~~~~~~~~~~~~ 48 (258)
T 3uq3_A 6 DKEKAEGNKFYKARQFDEAIEHYNKAWELH--K-----------------------------------DITYLNNRAAAE 48 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--C-----------------------------------CTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhh--c-----------------------------------cHHHHHHHHHHH
Confidence 445556666666666666666666665443 3 344445555555
Q ss_pred HhcCCHHHHHHHHHhcCC--C-C-------hhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC
Q 036237 362 SKCGSIESALTVFRAISK--K-K-------VGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAG 431 (689)
Q Consensus 362 ~~~g~~~~A~~~~~~~~~--~-~-------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g 431 (689)
...|++++|.+.|+++.. | + ...|..+...|...|++++|++.|++... ..|+. ..+...|
T Consensus 49 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~--~~~~~-------~~~~~~~ 119 (258)
T 3uq3_A 49 YEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLT--EHRTA-------DILTKLR 119 (258)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCCCH-------HHHHHHH
T ss_pred HHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHh--cCchh-------HHHHHHh
Confidence 555666666665555443 1 1 46778888888899999999999998887 45553 3455668
Q ss_pred cHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCChHHHHHHH
Q 036237 432 LVNDGRRYFNMMINDYGIEPT-IEHYGCLVDILCRTGYLEEAKSTIESM-P-MRPNFVIWMSLLSGARNHGNKDIGEYAA 508 (689)
Q Consensus 432 ~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~ll~~~~~~g~~~~a~~~~ 508 (689)
++++|...++.+.. ..|+ ...+..+...|...|++++|...++++ . .+.+..+|..+...+...|++++|+..+
T Consensus 120 ~~~~a~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 196 (258)
T 3uq3_A 120 NAEKELKKAEAEAY---VNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADC 196 (258)
T ss_dssp HHHHHHHHHHHHHH---CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHH---cCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 88999999998874 3343 677888999999999999999999886 2 2346788999999999999999999999
Q ss_pred HHHhhcCCCCchhHHHHHHHHHhcCCcchHHHHHHHHHhC
Q 036237 509 NNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKR 548 (689)
Q Consensus 509 ~~~~~~~p~~~~~~~~L~~~~~~~g~~~~A~~~~~~m~~~ 548 (689)
+++++..|+++..+..++.+|.+.|++++|...+++..+.
T Consensus 197 ~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 236 (258)
T 3uq3_A 197 NKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTK 236 (258)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999988753
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.57 E-value=1.3e-13 Score=134.77 Aligned_cols=239 Identities=12% Similarity=0.016 Sum_probs=169.6
Q ss_pred cchHHHHHHHHHhcCCHHHHHHHHHhcCC--CChHHHHHHHHHHHHcCChHHHHHHHHHhccCCCCcChh-hHHHHHHHH
Q 036237 250 LVSWNAMINGYMKAGDVDSACELFDDMEI--RDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDA-TLVSALSAV 326 (689)
Q Consensus 250 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~ 326 (689)
...+..+...|...|++++|...|++..+ .+...|..+...|...|++++|++.|++..+.. |+.. .+
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~------- 75 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELHKDITYLNNRAAAEYEKGEYETAISTLNDAVEQG--REMRADY------- 75 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--HHTTCCH-------
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhhccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC--cccccch-------
Confidence 35678899999999999999999987643 677889999999999999999999999987532 2110 00
Q ss_pred HcccchhhHHHHHHHHHHhCCccchhHHhHHHhhHHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHH
Q 036237 327 AGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFN 406 (689)
Q Consensus 327 ~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~ 406 (689)
+....++..+...|.+.|++++|.+.|+++...+.. ...+...|++++|+..++
T Consensus 76 ---------------------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-----~~~~~~~~~~~~a~~~~~ 129 (258)
T 3uq3_A 76 ---------------------KVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRT-----ADILTKLRNAEKELKKAE 129 (258)
T ss_dssp ---------------------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-----HHHHHHHHHHHHHHHHHH
T ss_pred ---------------------HHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCch-----hHHHHHHhHHHHHHHHHH
Confidence 000234444555555566666666666555431111 234555677778888888
Q ss_pred HHHHCCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-
Q 036237 407 KMCRMGMKPT-AITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESM-PMRP- 483 (689)
Q Consensus 407 ~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p- 483 (689)
++... .|+ ...+..+...+...|++++|...|+.+... .+.+...+..+...|.+.|++++|...++++ ...|
T Consensus 130 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~ 205 (258)
T 3uq3_A 130 AEAYV--NPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKR--APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPN 205 (258)
T ss_dssp HHHHC--CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHc--CcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--CcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHH
Confidence 77763 343 346667777778888888888888887742 2334677888888888888888888888776 2233
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHhhcC------CCCchhHHHHHH
Q 036237 484 NFVIWMSLLSGARNHGNKDIGEYAANNLIKVA------PDTIGCYVVLSN 527 (689)
Q Consensus 484 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~------p~~~~~~~~L~~ 527 (689)
+...|..+...+...|+++.|...+++++++. |++...+..|..
T Consensus 206 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~p~~~~~~~~l~~ 255 (258)
T 3uq3_A 206 FVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYK 255 (258)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhChhhcCCCchHHHHHHHHH
Confidence 57788889999999999999999999999988 777666555543
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.53 E-value=4.6e-13 Score=132.31 Aligned_cols=240 Identities=9% Similarity=-0.084 Sum_probs=177.5
Q ss_pred cCChHHHHHHHHHhccCCC---CcChhhHHHHHHHHHcccchhhHHHHHHHHHHhCCccchhHHhHHHhhHHhcCCHHHH
Q 036237 294 NGRFMEALELLETMLIGDV---LPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESA 370 (689)
Q Consensus 294 ~g~~~~A~~~~~~m~~~g~---~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A 370 (689)
.|++++|+..|+++.+... +.+..++..+...+...|++++|...+..+++.. +.+..++..+...|...|++++|
T Consensus 18 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A 96 (275)
T 1xnf_A 18 TLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAA 96 (275)
T ss_dssp CHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHH
T ss_pred cchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHHH
Confidence 3556666666666665421 1123445555666666677777777776666654 33567777888888889999999
Q ss_pred HHHHHhcCC---CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhc
Q 036237 371 LTVFRAISK---KKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDY 447 (689)
Q Consensus 371 ~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~ 447 (689)
.+.|+++.. .+...|..+...|.+.|++++|+..|+++.+ ..|+.......+..+...|++++|...++.....
T Consensus 97 ~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~--~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~- 173 (275)
T 1xnf_A 97 YEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQ--DDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK- 173 (275)
T ss_dssp HHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhc-
Confidence 998887764 4677899999999999999999999999988 4566665555556667789999999999888753
Q ss_pred CCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCC-CCCC-----HHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchh
Q 036237 448 GIEPTIEHYGCLVDILCRTGYLEEAKSTIESMP-MRPN-----FVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGC 521 (689)
Q Consensus 448 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~p~-----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 521 (689)
.+++...+ .++..+...++.++|...+++.- ..|+ ..+|..+...+...|++++|...++++++++|++...
T Consensus 174 -~~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 251 (275)
T 1xnf_A 174 -SDKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVE 251 (275)
T ss_dssp -SCCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCHH
T ss_pred -CCcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchhHHH
Confidence 33444444 47888888899999999998863 2232 5788999999999999999999999999999977544
Q ss_pred HHHHHHHHHhcCCcchHHHHH
Q 036237 522 YVVLSNIYAAAGQWDKVSEVR 542 (689)
Q Consensus 522 ~~~L~~~~~~~g~~~~A~~~~ 542 (689)
+ ..++...|++++|.+.+
T Consensus 252 ~---~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 252 H---RYALLELSLLGQDQDDL 269 (275)
T ss_dssp H---HHHHHHHHHHHHC----
T ss_pred H---HHHHHHHHHHHhhHHHH
Confidence 3 56777888888887665
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.52 E-value=4.3e-13 Score=132.39 Aligned_cols=243 Identities=13% Similarity=0.032 Sum_probs=134.6
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHhcCC---CChHHHHHHHHHHHHcCChHHHHHHHHHhccCCCCcChhhHHHHHHHHHc
Q 036237 252 SWNAMINGYMKAGDVDSACELFDDMEI---RDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAG 328 (689)
Q Consensus 252 ~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~ 328 (689)
........+...|++++|...|++..+ .+...|..+...|...|++++|++.|++..... ++...
T Consensus 5 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~---------- 72 (272)
T 3u4t_A 5 VEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKV--NATKA---------- 72 (272)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTS--CTTTC----------
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcc--CchhH----------
Confidence 344555666666777777776666542 234466666666666777777777666666522 22111
Q ss_pred ccchhhHHHHHHHHHHhCCccchhHHhHHHhhHHhcCCHHHHHHHHHhcCC---CChhhHHHHHHHHHHcCCHHHHHHHH
Q 036237 329 LAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISK---KKVGHWTAMIVGLGMHGMATQALDLF 405 (689)
Q Consensus 329 ~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~ 405 (689)
....+..+...|...|++++|.+.|++..+ .+...|..+...|...|++++|++.|
T Consensus 73 ---------------------~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 131 (272)
T 3u4t_A 73 ---------------------KSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYM 131 (272)
T ss_dssp ---------------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ---------------------HHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHH
Confidence 011233444444445555555555544432 23345555555555556666666555
Q ss_pred HHHHHCCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCC---HHHHHHHHHhC-
Q 036237 406 NKMCRMGMKPT-AITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPT-IEHYGCLVDILCRTGY---LEEAKSTIESM- 479 (689)
Q Consensus 406 ~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~---~~~A~~~~~~~- 479 (689)
++..+. .|+ ...+..+...+...+++++|...|+.+.+ ..|+ ...+..+...+...|+ +++|...++++
T Consensus 132 ~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~---~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~ 206 (272)
T 3u4t_A 132 EKQIRP--TTTDPKVFYELGQAYYYNKEYVKADSSFVKVLE---LKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLI 206 (272)
T ss_dssp GGGCCS--SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHH
T ss_pred HHHhhc--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHH
Confidence 555542 333 22333333133333466666666666553 2232 4455555555555555 44455554443
Q ss_pred ---CCCCC------HHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchhHHHHHHHHHhc
Q 036237 480 ---PMRPN------FVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAA 532 (689)
Q Consensus 480 ---~~~p~------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~~~~~ 532 (689)
...|+ ..+|..+...+...|+++.|...++++++++|+++.+...+.......
T Consensus 207 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~ 268 (272)
T 3u4t_A 207 EVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNKKAIDGLKMKLEHH 268 (272)
T ss_dssp HHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHC------
T ss_pred HHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccHHHHHHHhhhhhccc
Confidence 11122 246777888889999999999999999999999987777766555443
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.52 E-value=7.4e-13 Score=141.04 Aligned_cols=367 Identities=10% Similarity=-0.005 Sum_probs=185.2
Q ss_pred HHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCh---HHHHHHHhhCCCCCeehHHHHHHHHHhCC----
Q 036237 130 KGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEI---DLGRRVFDAMDDKDLVSWNCLIDGYVKKG---- 202 (689)
Q Consensus 130 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~---~~A~~~~~~m~~~~~~~~~~li~~~~~~g---- 202 (689)
..+.+.|++++|.+++..+.+.| +...+..|..+|...|+. ++|...|++..+.++..+..|...+...|
T Consensus 11 ~~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~~~~A~~~Lg~~~~~~~~~~~ 87 (452)
T 3e4b_A 11 NEALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADTSPRAQARLGRLLAAKPGATE 87 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC----------------------------CHHHHHHHHHTC--CCH
T ss_pred HHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCC
Confidence 34445566666666666666655 222333444455555555 66666666665555555555555444443
Q ss_pred -ChHHHHHHHhhCCCC-CcchHHHHHHHHHhCCChHH---HHHHHhhcCc-CCcchHHHHHHHHHhcCC----HHHHHHH
Q 036237 203 -EVEVAMKLFDEMPDR-DLFSWTCLVDGFSKCGKVEI---AREIFYRMPN-RNLVSWNAMINGYMKAGD----VDSACEL 272 (689)
Q Consensus 203 -~~~~A~~~~~~m~~~-d~~~~~~li~~~~~~g~~~~---A~~~~~~~~~-~~~~~~~~li~~~~~~g~----~~~A~~~ 272 (689)
+.++|+..|++..++ +...+..|...|...+..++ +.+.+....+ .++.....|...|...+. .+++..+
T Consensus 88 ~~~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~~~a~~~Lg~~y~~~~~~~~~~~~a~~~ 167 (452)
T 3e4b_A 88 AEHHEAESLLKKAFANGEGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGYPEAGLAQVLLYRTQGTYDQHLDDVERI 167 (452)
T ss_dssp HHHHHHHHHHHHHHHTTCSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTCTTHHHHHHHHHHHHTCGGGGHHHHHHH
T ss_pred cCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcccCHHHHHHH
Confidence 455666666655442 33455555555555443322 2222222222 234555566666666653 3344444
Q ss_pred HHhcCCCChHHHHHHHHHHHHcC---ChHHHHHHHHHhccCCCCcChhhHHHHHHHHHcccchhhHHHHHHHHHHhCCcc
Q 036237 273 FDDMEIRDLITWNSMIAGYELNG---RFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVV 349 (689)
Q Consensus 273 ~~~~~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~ 349 (689)
+......++.++..|...|...| +.++|++.|++..+.|. +
T Consensus 168 ~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~-~----------------------------------- 211 (452)
T 3e4b_A 168 CKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGT-V----------------------------------- 211 (452)
T ss_dssp HHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTC-S-----------------------------------
T ss_pred HHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCC-H-----------------------------------
Confidence 55555555556666666666666 56666666666655441 1
Q ss_pred chhHHhHHHhhHHhc----CCHHHHHHHHHhcCCCChhhHHHHHHH-H--HHcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 036237 350 DGVLGTLLIQMYSKC----GSIESALTVFRAISKKKVGHWTAMIVG-L--GMHGMATQALDLFNKMCRMGMKPTAITFIG 422 (689)
Q Consensus 350 ~~~~~~~li~~~~~~----g~~~~A~~~~~~~~~~~~~~~~~li~~-~--~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ 422 (689)
+...+..|..+|... ++.++|.+.|++....++..+..|... | ...+++++|++.|++..+.| +...+..
T Consensus 212 ~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~ 288 (452)
T 3e4b_A 212 TAQRVDSVARVLGDATLGTPDEKTAQALLEKIAPGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELL 288 (452)
T ss_dssp CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHGGGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHH
Confidence 222222333334332 566666666666553345556666555 3 34677777777777777655 4445555
Q ss_pred HHHHHhccC-----cHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHh----cCCHHHHHHHHHhCCCCCCHHHHHHHHH
Q 036237 423 VLNACSHAG-----LVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCR----TGYLEEAKSTIESMPMRPNFVIWMSLLS 493 (689)
Q Consensus 423 ll~a~~~~g-----~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~p~~~~~~~ll~ 493 (689)
|...|. .| ++++|..+|++.. .-++..+..|..+|.. ..++++|...|++.-...+......|..
T Consensus 289 Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-----~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~~A~~~Lg~ 362 (452)
T 3e4b_A 289 LGKLYY-EGKWVPADAKAAEAHFEKAV-----GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQNSADFAIAQ 362 (452)
T ss_dssp HHHHHH-HCSSSCCCHHHHHHHHHTTT-----TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTCTTHHHHHHH
T ss_pred HHHHHH-cCCCCCCCHHHHHHHHHHHh-----CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhChHHHHHHHHH
Confidence 555554 44 7777777776654 2345566666666665 3377777777776532334444555555
Q ss_pred HHHh----cCChHHHHHHHHHHhhcCCCCchhHHHHHHHHH--hcCCcchHHHHHHHHH
Q 036237 494 GARN----HGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYA--AAGQWDKVSEVREMMK 546 (689)
Q Consensus 494 ~~~~----~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~~~--~~g~~~~A~~~~~~m~ 546 (689)
.|.. ..|.+.|...++++.+..+.. +...+..+.. ..++.++|..+.++..
T Consensus 363 ~y~~G~g~~~d~~~A~~~~~~A~~~g~~~--a~~~l~~l~~~~~~~~~~~a~~~~~~~~ 419 (452)
T 3e4b_A 363 LFSQGKGTKPDPLNAYVFSQLAKAQDTPE--ANDLATQLEAPLTPAQRAEGQRLVQQEL 419 (452)
T ss_dssp HHHSCTTBCCCHHHHHHHHHHHHTTCCHH--HHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHHhCCCCCCCHHHHHHHHHHHHHCCCHH--HHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 5543 347778888888877765432 3333333322 2334556666665544
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.50 E-value=1.2e-12 Score=139.30 Aligned_cols=342 Identities=10% Similarity=0.001 Sum_probs=170.3
Q ss_pred HHHHHHhCCChHHHHHHHhhCCC-CCcchHHHHHHHHHhCCCh---HHHHHHHhhcCcCCcchHHHHHHHHHhcC-----
Q 036237 194 LIDGYVKKGEVEVAMKLFDEMPD-RDLFSWTCLVDGFSKCGKV---EIAREIFYRMPNRNLVSWNAMINGYMKAG----- 264 (689)
Q Consensus 194 li~~~~~~g~~~~A~~~~~~m~~-~d~~~~~~li~~~~~~g~~---~~A~~~~~~~~~~~~~~~~~li~~~~~~g----- 264 (689)
+...+.+.|++++|+++|++..+ .+...+..+...|...|+. ++|...|++..+.++..+..|..++...+
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~g~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~~~~A~~~Lg~~~~~~~~~~~~ 88 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAELGYSEAQVGLADIQVGTRDPAQIKQAEATYRAAADTSPRAQARLGRLLAAKPGATEA 88 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCCTGGGTCC----------------------------CHHHHHHHHHTC--CCHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCc
Confidence 45556667777777777776654 2444555555555556666 67777777666555556666666444444
Q ss_pred CHHHHHHHHHhcCCC-ChHHHHHHHHHHHHcCChHH---HHHHHHHhccCCCCcChhhHHHHHHHHHcccchhhHHHHHH
Q 036237 265 DVDSACELFDDMEIR-DLITWNSMIAGYELNGRFME---ALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHS 340 (689)
Q Consensus 265 ~~~~A~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~---A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~ 340 (689)
+.++|...|++...+ +...+..|...|...+..++ +.+.+......| +......+...+...+.++++.....
T Consensus 89 ~~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~~~~~~~~a~ 165 (452)
T 3e4b_A 89 EHHEAESLLKKAFANGEGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQGTYDQHLDDVE 165 (452)
T ss_dssp HHHHHHHHHHHHHHTTCSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHTCGGGGHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcccCHHHHH
Confidence 556666666665433 34456666666665544332 333333333222 22333444444444454443333322
Q ss_pred HHHHhCCccchhHHhHHHhhHHhcC---CHHHHHHHHHhcCCC---ChhhHHHHHHHHHHc----CCHHHHHHHHHHHHH
Q 036237 341 YIVKNGFVVDGVLGTLLIQMYSKCG---SIESALTVFRAISKK---KVGHWTAMIVGLGMH----GMATQALDLFNKMCR 410 (689)
Q Consensus 341 ~~~~~g~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~----g~~~~A~~l~~~m~~ 410 (689)
...+.-...++..+..|..+|.+.| +.++|.+.|++..+. +...+..|...|... +++++|++.|++..
T Consensus 166 ~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa- 244 (452)
T 3e4b_A 166 RICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA- 244 (452)
T ss_dssp HHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-
Confidence 2322222233345566666666666 666666666655432 222334555555443 56666666666665
Q ss_pred CCCCCCHHHHHHHHHH-H--hccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcC-----CHHHHHHHHHhCCCC
Q 036237 411 MGMKPTAITFIGVLNA-C--SHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTG-----YLEEAKSTIESMPMR 482 (689)
Q Consensus 411 ~g~~p~~~t~~~ll~a-~--~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g-----~~~~A~~~~~~~~~~ 482 (689)
.| +...+..+... + ...+++++|..+|++..+ .| +...+..|..+|. .| ++++|...|++.- .
T Consensus 245 ~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~-~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-~ 315 (452)
T 3e4b_A 245 PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRA-AD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-G 315 (452)
T ss_dssp GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHH-TT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-T
T ss_pred CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH-CC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-C
Confidence 22 23334444433 2 346666666666666653 22 4555556666665 34 6666766666665 4
Q ss_pred CCHHHHHHHHHHHHh----cCChHHHHHHHHHHhhcCCCCchhHHHHHHHHHh----cCCcchHHHHHHHHHhCCC
Q 036237 483 PNFVIWMSLLSGARN----HGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAA----AGQWDKVSEVREMMKKRGF 550 (689)
Q Consensus 483 p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~~~~----~g~~~~A~~~~~~m~~~~~ 550 (689)
.++..+..|...|.. ..|.+.|...++++.+. .++.+...|+.+|.. ..+.++|..+++...+.|.
T Consensus 316 g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~ 389 (452)
T 3e4b_A 316 REVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARN--GQNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDT 389 (452)
T ss_dssp TCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTT--TCTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCC
T ss_pred CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhh--ChHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCC
Confidence 455566666555544 23666666666666553 344566666666654 3356666666666665553
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.47 E-value=3.4e-12 Score=124.34 Aligned_cols=196 Identities=9% Similarity=-0.051 Sum_probs=141.6
Q ss_pred hhHHhHHHhhHHhcCCHHHHHHHHHhcCC---CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 036237 351 GVLGTLLIQMYSKCGSIESALTVFRAISK---KKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNAC 427 (689)
Q Consensus 351 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~ 427 (689)
...+..+...|...|++++|.+.|+++.. .+...|..+...|...|++++|++.|+++.+.. +.+...+..+...+
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 115 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFL 115 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHH
Confidence 34555566667777777777777766543 355677777777777888888888887777642 22455677777777
Q ss_pred hccCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCChHHH
Q 036237 428 SHAGLVNDGRRYFNMMINDYGIEPT-IEHYGCLVDILCRTGYLEEAKSTIESM-PMR-PNFVIWMSLLSGARNHGNKDIG 504 (689)
Q Consensus 428 ~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~ll~~~~~~g~~~~a 504 (689)
...|++++|..+++.+.. .+..|+ ...+..+...|.+.|++++|.+.++++ ... .+...|..+...+...|++++|
T Consensus 116 ~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 194 (252)
T 2ho1_A 116 YEQKRYEEAYQRLLEASQ-DTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPA 194 (252)
T ss_dssp HHTTCHHHHHHHHHHHTT-CTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhHHHHHHHHHHHHHh-CccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHH
Confidence 778888888888877763 224453 566777777888888888888887775 222 3566777888888888888888
Q ss_pred HHHHHHHhhcCCCCchhHHHHHHHHHhcCCcchHHHHHHHHHhC
Q 036237 505 EYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKR 548 (689)
Q Consensus 505 ~~~~~~~~~~~p~~~~~~~~L~~~~~~~g~~~~A~~~~~~m~~~ 548 (689)
...++++++..|+++..+..++.+|...|++++|.++++++.+.
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 195 RQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp HHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 88888888888888878888888888888888888888877653
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.47 E-value=1.7e-11 Score=121.06 Aligned_cols=223 Identities=11% Similarity=-0.018 Sum_probs=144.7
Q ss_pred ChHHHHHHHHHHHHcCChHHHHHHHHHhccCCCCcChhhHHHHHHHHHcccchhhHHHHHHHHHHhCCccchhHHhHHHh
Q 036237 280 DLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQ 359 (689)
Q Consensus 280 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~ 359 (689)
++.++..+...|...|++++|+..|++..+.+ +...+.. +..
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~-----------------------------------lg~ 46 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFN-----------------------------------LGV 46 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHH-----------------------------------HHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHH-----------------------------------HHH
Confidence 55667777777777778888887777776522 2223333 444
Q ss_pred hHHh----cCCHHHHHHHHHhcCC-CChhhHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc-
Q 036237 360 MYSK----CGSIESALTVFRAISK-KKVGHWTAMIVGLGM----HGMATQALDLFNKMCRMGMKPTAITFIGVLNACSH- 429 (689)
Q Consensus 360 ~~~~----~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~- 429 (689)
.|.. .|++++|.+.|++..+ .+...+..+...|.. .+++++|++.|++..+.+ +...+..+...+..
T Consensus 47 ~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~ 123 (273)
T 1ouv_A 47 LYYQGQGVEKNLKKAASFYAKACDLNYSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDG 123 (273)
T ss_dssp HHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHC
T ss_pred HHHcCCCcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcC
Confidence 4444 5555555555554433 244556666666666 666777777776666643 45556666666666
Q ss_pred ---cCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHh----cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----c
Q 036237 430 ---AGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCR----TGYLEEAKSTIESMPMRPNFVIWMSLLSGARN----H 498 (689)
Q Consensus 430 ---~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~----~ 498 (689)
.+++++|..+|++..+. + +...+..+...|.. .+++++|...+++.-...+...+..+...+.. .
T Consensus 124 ~~~~~~~~~A~~~~~~a~~~-~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~ 199 (273)
T 1ouv_A 124 KVVTRDFKKAVEYFTKACDL-N---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGAT 199 (273)
T ss_dssp SSSCCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSC
T ss_pred CCcccCHHHHHHHHHHHHhc-C---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCC
Confidence 67777777777766632 2 44556666666666 67777777777665322355667777777777 7
Q ss_pred CChHHHHHHHHHHhhcCCCCchhHHHHHHHHHh----cCCcchHHHHHHHHHhCC
Q 036237 499 GNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAA----AGQWDKVSEVREMMKKRG 549 (689)
Q Consensus 499 g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~~~~----~g~~~~A~~~~~~m~~~~ 549 (689)
+++++|...++++++.+| +..+..|+.+|.. .|++++|.+.+++..+.|
T Consensus 200 ~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 200 KNFKEALARYSKACELEN--GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp CCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred ccHHHHHHHHHHHHhCCC--HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 788888888888777765 5677778888887 788888888888776654
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.47 E-value=4.7e-12 Score=120.63 Aligned_cols=196 Identities=12% Similarity=0.004 Sum_probs=154.2
Q ss_pred chhHHhHHHhhHHhcCCHHHHHHHHHhcCC---CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 036237 350 DGVLGTLLIQMYSKCGSIESALTVFRAISK---KKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNA 426 (689)
Q Consensus 350 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a 426 (689)
+..++..+...|...|++++|.+.|+++.. .+...|..+...|...|++++|++.|+++.+.. +.+..++..+...
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~ 85 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWF 85 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHH
Confidence 455666777778888888888888877653 356678888888888888888888888887742 2345677778888
Q ss_pred Hhcc-CcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChH
Q 036237 427 CSHA-GLVNDGRRYFNMMINDYGIEPT-IEHYGCLVDILCRTGYLEEAKSTIESM-PMRP-NFVIWMSLLSGARNHGNKD 502 (689)
Q Consensus 427 ~~~~-g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~ 502 (689)
+... |++++|...++.+.. .+..|+ ...+..+...|...|++++|...++++ ...| +...|..+...+...|+++
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~ 164 (225)
T 2vq2_A 86 LCGRLNRPAESMAYFDKALA-DPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLG 164 (225)
T ss_dssp HHTTTCCHHHHHHHHHHHHT-STTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHhcCcHHHHHHHHHHHHc-CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHH
Confidence 8888 888888888888874 233444 567788888888889999988888876 2233 5778888888888899999
Q ss_pred HHHHHHHHHhhcCC-CCchhHHHHHHHHHhcCCcchHHHHHHHHHh
Q 036237 503 IGEYAANNLIKVAP-DTIGCYVVLSNIYAAAGQWDKVSEVREMMKK 547 (689)
Q Consensus 503 ~a~~~~~~~~~~~p-~~~~~~~~L~~~~~~~g~~~~A~~~~~~m~~ 547 (689)
+|...++++++..| +++..+..++..+...|+.++|..+++.+.+
T Consensus 165 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 210 (225)
T 2vq2_A 165 DADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQA 210 (225)
T ss_dssp HHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 99999999998888 8888888888888889999999888888765
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.47 E-value=1.6e-12 Score=125.67 Aligned_cols=196 Identities=13% Similarity=0.104 Sum_probs=145.9
Q ss_pred chhHHhHHHhhHHhcCCHHHHHHHHHhcCC---CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 036237 350 DGVLGTLLIQMYSKCGSIESALTVFRAISK---KKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNA 426 (689)
Q Consensus 350 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a 426 (689)
....+..+...+...|++++|...|+++.. .+...|..+...|...|++++|++.|++..+.. +.+...+..+...
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~ 100 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGNV 100 (243)
T ss_dssp --------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHHH
Confidence 455666677778888888888888888754 356788888888999999999999999888742 2356677888888
Q ss_pred HhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCChHHH
Q 036237 427 CSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESM-PM-RPNFVIWMSLLSGARNHGNKDIG 504 (689)
Q Consensus 427 ~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~ll~~~~~~g~~~~a 504 (689)
+...|++++|..+++.+.+. .+.+...+..+...|.+.|++++|...++++ .. +.+...|..+...+...|+++.|
T Consensus 101 ~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 178 (243)
T 2q7f_A 101 YVVKEMYKEAKDMFEKALRA--GMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEA 178 (243)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--TCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHH
T ss_pred HHHhccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHHH
Confidence 88999999999999988853 2345678888889999999999999998876 22 34677888888999999999999
Q ss_pred HHHHHHHhhcCCCCchhHHHHHHHHHhcCCcchHHHHHHHHHhC
Q 036237 505 EYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKR 548 (689)
Q Consensus 505 ~~~~~~~~~~~p~~~~~~~~L~~~~~~~g~~~~A~~~~~~m~~~ 548 (689)
+..++++++..|+++.++..++.+|...|++++|...++++.+.
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 222 (243)
T 2q7f_A 179 LSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDI 222 (243)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Confidence 99999999999998889999999999999999999999988763
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.46 E-value=1.7e-11 Score=121.17 Aligned_cols=225 Identities=10% Similarity=-0.053 Sum_probs=167.0
Q ss_pred CcchHHHHHHHHHhcCCHHHHHHHHHhcCCC-ChHHHHHHHHHHHH----cCChHHHHHHHHHhccCCCCcChhhHHHHH
Q 036237 249 NLVSWNAMINGYMKAGDVDSACELFDDMEIR-DLITWNSMIAGYEL----NGRFMEALELLETMLIGDVLPNDATLVSAL 323 (689)
Q Consensus 249 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll 323 (689)
++.++..+...|...|++++|...|++..++ +..++..+...|.. .+++++|+..|++..+.+ +...+..+
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l- 80 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHLL- 80 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHH-
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHHHH-
Confidence 4567788999999999999999999987755 67788889999999 999999999999887654 33333333
Q ss_pred HHHHcccchhhHHHHHHHHHHhCCccchhHHhHHHhhHHh----cCCHHHHHHHHHhcCC-CChhhHHHHHHHHHH----
Q 036237 324 SAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSK----CGSIESALTVFRAISK-KKVGHWTAMIVGLGM---- 394 (689)
Q Consensus 324 ~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~---- 394 (689)
..+|.. .+++++|.+.|++..+ .+..++..+...|..
T Consensus 81 ----------------------------------g~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~~~ 126 (273)
T 1ouv_A 81 ----------------------------------GNLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVV 126 (273)
T ss_dssp ----------------------------------HHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSS
T ss_pred ----------------------------------HHHHhCCCCcccCHHHHHHHHHHHHHcCCccHHHHHHHHHHcCCCc
Confidence 334444 5555555555555443 345566667777777
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc----cCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHh----c
Q 036237 395 HGMATQALDLFNKMCRMGMKPTAITFIGVLNACSH----AGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCR----T 466 (689)
Q Consensus 395 ~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~----~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~----~ 466 (689)
.+++++|++.|++..+.+ +...+..+...+.. .+++++|...|+...+. .+...+..+..+|.. .
T Consensus 127 ~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~----~~~~a~~~lg~~~~~g~~~~ 199 (273)
T 1ouv_A 127 TRDFKKAVEYFTKACDLN---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDL----KDSPGCFNAGNMYHHGEGAT 199 (273)
T ss_dssp CCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTCSSC
T ss_pred ccCHHHHHHHHHHHHhcC---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCC
Confidence 778888888888877754 45556666666766 78888888888887742 245677778888888 8
Q ss_pred CCHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHhhcCCCC
Q 036237 467 GYLEEAKSTIESMPMRPNFVIWMSLLSGARN----HGNKDIGEYAANNLIKVAPDT 518 (689)
Q Consensus 467 g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~p~~ 518 (689)
+++++|...+++.-...+...+..+...+.. .+++++|...+++++++.|++
T Consensus 200 ~~~~~A~~~~~~a~~~~~~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~ 255 (273)
T 1ouv_A 200 KNFKEALARYSKACELENGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAKG 255 (273)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCHH
T ss_pred ccHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcCCHH
Confidence 8888888888876322346777888888888 899999999999999998854
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.45 E-value=1.6e-11 Score=119.55 Aligned_cols=205 Identities=11% Similarity=-0.001 Sum_probs=151.8
Q ss_pred hHHHHHHHHHHHHcCChHHHHHHHHHhccCCCCcChhhHHHHHHHHHcccchhhHHHHHHHHHHhCCccchhHHhHHHhh
Q 036237 281 LITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQM 360 (689)
Q Consensus 281 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~ 360 (689)
...|..+...+...|++++|++.|+++.. .. +.+..++..+...
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~-----------------------------------~~-~~~~~~~~~la~~ 80 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALE-----------------------------------ID-PSSADAHAALAVV 80 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHH-----------------------------------HC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHh-----------------------------------cC-CChHHHHHHHHHH
Confidence 34555566666666666666666665544 22 2234455566666
Q ss_pred HHhcCCHHHHHHHHHhcCC---CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCcHHHH
Q 036237 361 YSKCGSIESALTVFRAISK---KKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPT-AITFIGVLNACSHAGLVNDG 436 (689)
Q Consensus 361 ~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a 436 (689)
|...|++++|.+.|+++.. .+...|..+...|...|++++|++.|+++...+..|+ ...+..+...+...|++++|
T Consensus 81 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 160 (252)
T 2ho1_A 81 FQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQA 160 (252)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHH
Confidence 7777777777777776543 3566788888888888999999999988877444554 44677778888899999999
Q ss_pred HHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCChHHHHHHHHHHhhc
Q 036237 437 RRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESM-PMR-PNFVIWMSLLSGARNHGNKDIGEYAANNLIKV 514 (689)
Q Consensus 437 ~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 514 (689)
..+|+.+.+. .+.+...+..+...|.+.|++++|...++++ ... .+...+..+...+...|+.+.|...++++++.
T Consensus 161 ~~~~~~~~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 161 KEYFEKSLRL--NRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp HHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhc--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 9999988743 2334778888999999999999999999886 233 46678888888999999999999999999999
Q ss_pred CCCCchhHH
Q 036237 515 APDTIGCYV 523 (689)
Q Consensus 515 ~p~~~~~~~ 523 (689)
.|+++....
T Consensus 239 ~p~~~~~~~ 247 (252)
T 2ho1_A 239 YPGSLEYQE 247 (252)
T ss_dssp CTTSHHHHH
T ss_pred CCCCHHHHH
Confidence 998875543
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.44 E-value=3e-12 Score=132.27 Aligned_cols=241 Identities=10% Similarity=0.006 Sum_probs=166.9
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHhccCCCCcC-hhhHHHHHHHHHcccc-hhhHHHHHHHHHHhCCccchhHHhHHHh
Q 036237 282 ITWNSMIAGYELNGRFMEALELLETMLIGDVLPN-DATLVSALSAVAGLAV-LNKGRWMHSYIVKNGFVVDGVLGTLLIQ 359 (689)
Q Consensus 282 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~~~-~~~a~~i~~~~~~~g~~~~~~~~~~li~ 359 (689)
..|+.+...+.+.|++++|++.|++.+.. .|+ ...|..+..++...|+ +++|...++.+++.. +.+..+|..+..
T Consensus 98 ~a~~~lg~~~~~~g~~~~Al~~~~~al~l--~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g~ 174 (382)
T 2h6f_A 98 DVYDYFRAVLQRDERSERAFKLTRDAIEL--NAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRV 174 (382)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHh--CccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
Confidence 34555555555555555555555555542 232 3334444445555554 555555555555544 234566666777
Q ss_pred hHHhcCCHHHHHHHHHhcCC---CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhc-cCcHH
Q 036237 360 MYSKCGSIESALTVFRAISK---KKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPT-AITFIGVLNACSH-AGLVN 434 (689)
Q Consensus 360 ~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~-~g~~~ 434 (689)
+|.+.|++++|+..|+++.. .+...|..+..++.+.|++++|+..|+++++. .|+ ...|+.+..++.. .|..+
T Consensus 175 ~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l--~P~~~~a~~~lg~~l~~l~~~~~ 252 (382)
T 2h6f_A 175 LVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKE--DVRNNSVWNQRYFVISNTTGYND 252 (382)
T ss_dssp HHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCSCS
T ss_pred HHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCcch
Confidence 77777777777777777654 46678888888888889999999999998884 454 5578888888877 55546
Q ss_pred HH-----HHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcC--CHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcC------
Q 036237 435 DG-----RRYFNMMINDYGIEPT-IEHYGCLVDILCRTG--YLEEAKSTIESMPMRP-NFVIWMSLLSGARNHG------ 499 (689)
Q Consensus 435 ~a-----~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g--~~~~A~~~~~~~~~~p-~~~~~~~ll~~~~~~g------ 499 (689)
+| +..|+..+. +.|+ ...|..+..+|.+.| ++++|.+.+.++...| +...+..++..+...|
T Consensus 253 eA~~~~el~~~~~Al~---l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~~~~p~~~~al~~La~~~~~~~~~~~~~ 329 (382)
T 2h6f_A 253 RAVLEREVQYTLEMIK---LVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDN 329 (382)
T ss_dssp HHHHHHHHHHHHHHHH---HSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHTTCSS
T ss_pred HHHHHHHHHHHHHHHH---HCCCCHHHHHHHHHHHHccCccchHHHHHHHHHhccCCCCHHHHHHHHHHHHHHhcccccc
Confidence 66 477877773 4455 678888888888888 6888988888775445 4667888888887764
Q ss_pred --C-hHHHHHHHHHH-hhcCCCCchhHHHHHHHHH
Q 036237 500 --N-KDIGEYAANNL-IKVAPDTIGCYVVLSNIYA 530 (689)
Q Consensus 500 --~-~~~a~~~~~~~-~~~~p~~~~~~~~L~~~~~ 530 (689)
+ .++|+.+++++ ++++|.....|..++..+.
T Consensus 330 ~~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~ 364 (382)
T 2h6f_A 330 KEDILNKALELCEILAKEKDTIRKEYWRYIGRSLQ 364 (382)
T ss_dssp HHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHH
Confidence 2 58899999999 8999988888877776654
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.44 E-value=2.1e-12 Score=124.86 Aligned_cols=212 Identities=14% Similarity=0.071 Sum_probs=144.1
Q ss_pred ChHHHHHHHHHHHHcCChHHHHHHHHHhccCCCCcChhhHHHHHHHHHcccchhhHHHHHHHHHHhCCccchhHHhHHHh
Q 036237 280 DLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQ 359 (689)
Q Consensus 280 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~ 359 (689)
....|..+...+...|++++|+..|+++.+.. | .+...+..+..
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~--~----------------------------------~~~~~~~~la~ 65 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN--K----------------------------------EDAIPYINFAN 65 (243)
T ss_dssp --------------------CCTTHHHHHTTC--T----------------------------------TCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC--c----------------------------------ccHHHHHHHHH
Confidence 34456666667777777777777777766532 2 22344445555
Q ss_pred hHHhcCCHHHHHHHHHhcCC---CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHH
Q 036237 360 MYSKCGSIESALTVFRAISK---KKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDG 436 (689)
Q Consensus 360 ~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a 436 (689)
.|.+.|++++|.+.|+++.. .+...|..+...|...|++++|++.|+++.+.. +.+...+..+...+...|++++|
T Consensus 66 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A 144 (243)
T 2q7f_A 66 LLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLA 144 (243)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHH
Confidence 66666666666666665543 356677888888888889999999888888743 33566777788888899999999
Q ss_pred HHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhc
Q 036237 437 RRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMP--MRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKV 514 (689)
Q Consensus 437 ~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 514 (689)
..+++.+.+. .+.+...+..+...|.+.|++++|...++++- .+.+..+|..+...+...|++++|...+++++++
T Consensus 145 ~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 222 (243)
T 2q7f_A 145 LPYLQRAVEL--NENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDI 222 (243)
T ss_dssp HHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHh--CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Confidence 9999888742 23457788889999999999999999998762 2346778999999999999999999999999999
Q ss_pred CCCCchhHHHHHHHHH
Q 036237 515 APDTIGCYVVLSNIYA 530 (689)
Q Consensus 515 ~p~~~~~~~~L~~~~~ 530 (689)
.|+++.++..+..+..
T Consensus 223 ~p~~~~~~~~~~~l~~ 238 (243)
T 2q7f_A 223 QPDHMLALHAKKLLGH 238 (243)
T ss_dssp CTTCHHHHHHHTC---
T ss_pred CcchHHHHHHHHHHHh
Confidence 9999887777665543
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.43 E-value=7.1e-12 Score=119.18 Aligned_cols=191 Identities=15% Similarity=0.065 Sum_probs=93.7
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHhccCCCCcChhhHHHHHHHHHcccchhhHHHHHHHHHHhCCccchhHHhHHHhhH
Q 036237 282 ITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMY 361 (689)
Q Consensus 282 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~ 361 (689)
..|..+...+.+.|++++|+..|++.++.. +.+...+..+...+...|++++|...++.+++.. +.+...+..+...|
T Consensus 6 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~ 83 (217)
T 2pl2_A 6 QNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLSEAY 83 (217)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHH
Confidence 344444555555555555555555554422 1122333333334444444444444444444433 12333444444444
Q ss_pred Hhc-----------CCHHHHHHHHHhcCC---CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 036237 362 SKC-----------GSIESALTVFRAISK---KKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNAC 427 (689)
Q Consensus 362 ~~~-----------g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~ 427 (689)
.+. |++++|...|++..+ .+...|..+...|...|++++|+..|++..+.. .+...+..+..++
T Consensus 84 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la~~~ 161 (217)
T 2pl2_A 84 VALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSALAELY 161 (217)
T ss_dssp HHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHH
T ss_pred HHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHHHHH
Confidence 444 666666666665543 244556666666666666666666666666654 4555666666666
Q ss_pred hccCcHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhC
Q 036237 428 SHAGLVNDGRRYFNMMINDYGIEP-TIEHYGCLVDILCRTGYLEEAKSTIESM 479 (689)
Q Consensus 428 ~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~ 479 (689)
...|++++|+..|+.+.+ ..| +...+..+..++.+.|++++|...+++.
T Consensus 162 ~~~g~~~~A~~~~~~al~---~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 162 LSMGRLDEALAQYAKALE---QAPKDLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHTCHHHHHHHHHHHHH---HSTTCHHHHHHHHHHHTC--------------
T ss_pred HHcCCHHHHHHHHHHHHH---hCCCChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 666666666666666663 233 3455666666666666666666666554
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.42 E-value=2e-12 Score=136.18 Aligned_cols=258 Identities=12% Similarity=-0.017 Sum_probs=165.5
Q ss_pred HHHHHHcCChHHHHHHHHHhccCCCCcCh-----hhHHHHHHHHHcccchhhHHHHHHHHHHh----C-CccchhHHhHH
Q 036237 288 IAGYELNGRFMEALELLETMLIGDVLPND-----ATLVSALSAVAGLAVLNKGRWMHSYIVKN----G-FVVDGVLGTLL 357 (689)
Q Consensus 288 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~-----~t~~~ll~a~~~~~~~~~a~~i~~~~~~~----g-~~~~~~~~~~l 357 (689)
...+...|++++|+..|+++++.+ |+. ..+..+...+...|++++|...+..+++. + .+....++..+
T Consensus 55 g~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 132 (411)
T 4a1s_A 55 GERLCNAGDCRAGVAFFQAAIQAG--TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNL 132 (411)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC--CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHhCcHHHHHHHHHHHHHhc--ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHH
Confidence 334444444444444444444321 211 12333344444444444444444444332 1 12234455666
Q ss_pred HhhHHhcCCHHHHHHHHHhcCCC---------ChhhHHHHHHHHHHcCC-----------------HHHHHHHHHHHHHC
Q 036237 358 IQMYSKCGSIESALTVFRAISKK---------KVGHWTAMIVGLGMHGM-----------------ATQALDLFNKMCRM 411 (689)
Q Consensus 358 i~~~~~~g~~~~A~~~~~~~~~~---------~~~~~~~li~~~~~~g~-----------------~~~A~~l~~~m~~~ 411 (689)
...|...|++++|.+.|++.... ...+|..+...|...|+ +++|++.+++..+.
T Consensus 133 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~ 212 (411)
T 4a1s_A 133 GNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKL 212 (411)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHH
Confidence 66777777777777777665431 23367777778888888 88888877776542
Q ss_pred ----CCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC----hhHHHHHHHHHHhcCCHHHHHHHHHhCC--
Q 036237 412 ----GMKPT-AITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPT----IEHYGCLVDILCRTGYLEEAKSTIESMP-- 480 (689)
Q Consensus 412 ----g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~~~-- 480 (689)
+-.|. ..++..+...+...|++++|..++++..+...-.++ ...+..+...|...|++++|...+++.-
T Consensus 213 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 292 (411)
T 4a1s_A 213 MRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLAL 292 (411)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 11122 236677778888888999998888887642211122 2377888889999999999988887751
Q ss_pred ---CC---CCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCC------chhHHHHHHHHHhcCCcchHHHHHHHHHh
Q 036237 481 ---MR---PNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDT------IGCYVVLSNIYAAAGQWDKVSEVREMMKK 547 (689)
Q Consensus 481 ---~~---p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~~L~~~~~~~g~~~~A~~~~~~m~~ 547 (689)
.. ....++..+...+...|++++|...+++++++.+.. ..++..++.+|...|++++|...+++..+
T Consensus 293 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 371 (411)
T 4a1s_A 293 AVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQ 371 (411)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 11 124577888888999999999999999998864432 34788999999999999999999998765
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.42 E-value=5.5e-12 Score=132.19 Aligned_cols=262 Identities=13% Similarity=0.002 Sum_probs=166.3
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHhccCCCCcCh-----hhHHHHHHHHHcccchhhHHHHHHHHHHh----CCc-cchhH
Q 036237 284 WNSMIAGYELNGRFMEALELLETMLIGDVLPND-----ATLVSALSAVAGLAVLNKGRWMHSYIVKN----GFV-VDGVL 353 (689)
Q Consensus 284 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-----~t~~~ll~a~~~~~~~~~a~~i~~~~~~~----g~~-~~~~~ 353 (689)
+......+...|++++|+..|+++...+ |+. ..+..+...+...|+++.|...+..+.+. +.. ....+
T Consensus 12 l~~~g~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 89 (406)
T 3sf4_A 12 LALEGERLCKSGDCRAGVSFFEAAVQVG--TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKA 89 (406)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC--CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHH
Confidence 3333444444444444444444444321 111 22333344444444444444444443321 111 12445
Q ss_pred HhHHHhhHHhcCCHHHHHHHHHhcCC-----CC----hhhHHHHHHHHHHcCC--------------------HHHHHHH
Q 036237 354 GTLLIQMYSKCGSIESALTVFRAISK-----KK----VGHWTAMIVGLGMHGM--------------------ATQALDL 404 (689)
Q Consensus 354 ~~~li~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~--------------------~~~A~~l 404 (689)
+..+...|...|++++|...|++... .+ ..++..+...|...|+ +++|++.
T Consensus 90 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~ 169 (406)
T 3sf4_A 90 SGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDF 169 (406)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHH
Confidence 56666777777777777777766543 12 3367777788888888 8888888
Q ss_pred HHHHHHC----CCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC----hhHHHHHHHHHHhcCCHHHHHHH
Q 036237 405 FNKMCRM----GMKPT-AITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPT----IEHYGCLVDILCRTGYLEEAKST 475 (689)
Q Consensus 405 ~~~m~~~----g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~ 475 (689)
+++.... +-.|. ..++..+...+...|++++|...+++......-.++ ...+..+...|...|++++|...
T Consensus 170 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 249 (406)
T 3sf4_A 170 YEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEY 249 (406)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHH
Confidence 7776542 11222 235777778888888999998888887643221222 34778888888999999999888
Q ss_pred HHhCC----CCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCC------chhHHHHHHHHHhcCCcchHHHH
Q 036237 476 IESMP----MRPN----FVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDT------IGCYVVLSNIYAAAGQWDKVSEV 541 (689)
Q Consensus 476 ~~~~~----~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~~L~~~~~~~g~~~~A~~~ 541 (689)
+++.- ..++ ..++..+...+...|++++|...+++++++.+.. ..++..++.+|...|++++|.+.
T Consensus 250 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 329 (406)
T 3sf4_A 250 YKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHF 329 (406)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 87751 1112 4577888888899999999999999988864432 55788899999999999999999
Q ss_pred HHHHHh
Q 036237 542 REMMKK 547 (689)
Q Consensus 542 ~~~m~~ 547 (689)
+++..+
T Consensus 330 ~~~al~ 335 (406)
T 3sf4_A 330 AEKHLE 335 (406)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 888764
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.42 E-value=2.6e-11 Score=115.44 Aligned_cols=208 Identities=14% Similarity=0.039 Sum_probs=151.4
Q ss_pred ChHHHHHHHHHHHHcCChHHHHHHHHHhccCCCCcChhhHHHHHHHHHcccchhhHHHHHHHHHHhCCccchhHHhHHHh
Q 036237 280 DLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQ 359 (689)
Q Consensus 280 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~ 359 (689)
+...|..+...+...|++++|++.|+++.+.. | .+...+..+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~----------------------------------~~~~~~~~l~~ 50 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSD--P----------------------------------KNELAWLVRAE 50 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--T----------------------------------TCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC--c----------------------------------cchHHHHHHHH
Confidence 45566777777777777777777777765432 2 12334455556
Q ss_pred hHHhcCCHHHHHHHHHhcCC---CChhhHHHHHHHHHHc-CCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCcHH
Q 036237 360 MYSKCGSIESALTVFRAISK---KKVGHWTAMIVGLGMH-GMATQALDLFNKMCRMGMKPT-AITFIGVLNACSHAGLVN 434 (689)
Q Consensus 360 ~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~-g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~ 434 (689)
.|...|++++|.+.|+++.. .+...|..+...|... |++++|+..|+++.+.+..|+ ...+..+...+...|+++
T Consensus 51 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 130 (225)
T 2vq2_A 51 IYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFG 130 (225)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHH
Confidence 66666666666666666543 3556777888888888 888888888888887433444 456777788888889999
Q ss_pred HHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CC-C-CCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 036237 435 DGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESM-PM-R-PNFVIWMSLLSGARNHGNKDIGEYAANNL 511 (689)
Q Consensus 435 ~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~-~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 511 (689)
+|...++.+.+. .+.+...+..+...|.+.|++++|...++++ .. + .+...+..+...+...|+.+.+...++.+
T Consensus 131 ~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 208 (225)
T 2vq2_A 131 LAEAYLKRSLAA--QPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQL 208 (225)
T ss_dssp HHHHHHHHHHHH--STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh--CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 999999888742 2234778888889999999999999998876 22 2 46667777777888999999999999999
Q ss_pred hhcCCCCchhHHHH
Q 036237 512 IKVAPDTIGCYVVL 525 (689)
Q Consensus 512 ~~~~p~~~~~~~~L 525 (689)
.+..|+++.....+
T Consensus 209 ~~~~p~~~~~~~~l 222 (225)
T 2vq2_A 209 QANFPYSEELQTVL 222 (225)
T ss_dssp HHHCTTCHHHHHHH
T ss_pred HHhCCCCHHHHHHh
Confidence 99999887665444
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.41 E-value=4.8e-12 Score=128.57 Aligned_cols=259 Identities=14% Similarity=0.003 Sum_probs=169.8
Q ss_pred HHHHHHcCChHHHHHHHHHhccCCCCcC-----hhhHHHHHHHHHcccchhhHHHHHHHHHHh----CCc-cchhHHhHH
Q 036237 288 IAGYELNGRFMEALELLETMLIGDVLPN-----DATLVSALSAVAGLAVLNKGRWMHSYIVKN----GFV-VDGVLGTLL 357 (689)
Q Consensus 288 i~~~~~~g~~~~A~~~~~~m~~~g~~p~-----~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~----g~~-~~~~~~~~l 357 (689)
...+...|++++|+..|+++.+.. |+ ...+..+...+...|+++.|...+..+.+. +.. ....++..+
T Consensus 12 g~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 89 (338)
T 3ro2_A 12 GERLCKSGDCRAGVSFFEAAVQVG--TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNL 89 (338)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC--CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHhhC--cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHH
Confidence 334444444444444444444321 21 123333444444444555544444443321 111 124456667
Q ss_pred HhhHHhcCCHHHHHHHHHhcCC-----CC----hhhHHHHHHHHHHcCC--------------------HHHHHHHHHHH
Q 036237 358 IQMYSKCGSIESALTVFRAISK-----KK----VGHWTAMIVGLGMHGM--------------------ATQALDLFNKM 408 (689)
Q Consensus 358 i~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~--------------------~~~A~~l~~~m 408 (689)
...|...|++++|...|++... .+ ..++..+...|...|+ +++|++.+++.
T Consensus 90 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a 169 (338)
T 3ro2_A 90 GNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEEN 169 (338)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHH
Confidence 7777778888888777776543 12 2367778888888888 88888888776
Q ss_pred HHC----CCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC----hhHHHHHHHHHHhcCCHHHHHHHHHhC
Q 036237 409 CRM----GMKPT-AITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPT----IEHYGCLVDILCRTGYLEEAKSTIESM 479 (689)
Q Consensus 409 ~~~----g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~~ 479 (689)
... +..|. ..++..+...+...|++++|...++...+...-.++ ...+..+...|...|++++|...+++.
T Consensus 170 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 249 (338)
T 3ro2_A 170 LSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKT 249 (338)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 542 11222 236777778888899999999999887642211122 347788889999999999999988875
Q ss_pred C----CCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCC------chhHHHHHHHHHhcCCcchHHHHHHHH
Q 036237 480 P----MRPN----FVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDT------IGCYVVLSNIYAAAGQWDKVSEVREMM 545 (689)
Q Consensus 480 ~----~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~~L~~~~~~~g~~~~A~~~~~~m 545 (689)
- ..++ ..++..+...+...|++++|...+++++++.|.. ..++..++.+|.+.|++++|...+++.
T Consensus 250 l~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 329 (338)
T 3ro2_A 250 LLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKH 329 (338)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 1 1122 4577888889999999999999999998865432 347889999999999999999999988
Q ss_pred HhC
Q 036237 546 KKR 548 (689)
Q Consensus 546 ~~~ 548 (689)
.+.
T Consensus 330 ~~~ 332 (338)
T 3ro2_A 330 LEI 332 (338)
T ss_dssp HHC
T ss_pred HHH
Confidence 763
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.40 E-value=2.7e-11 Score=119.29 Aligned_cols=219 Identities=9% Similarity=0.004 Sum_probs=164.5
Q ss_pred HHHcccchhhHHHHHHHHHHhCCccchhHHhHHHhhHHhcCCHHHHHHHHHhcCC--CCh----hhHHHHHHHHHHcCCH
Q 036237 325 AVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISK--KKV----GHWTAMIVGLGMHGMA 398 (689)
Q Consensus 325 a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~----~~~~~li~~~~~~g~~ 398 (689)
.+...|++++|...+..+++.. +.+...+..+...|...|++++|.+.|+++.. ++. .+|..+...|...|++
T Consensus 12 ~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~~~~~ 90 (272)
T 3u4t_A 12 FLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKKGQD 90 (272)
T ss_dssp HHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHHTTCH
T ss_pred HHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHcccH
Confidence 3334444444444444444332 22344556667777788888888888877654 222 3488999999999999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHH
Q 036237 399 TQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPT-IEHYGCLVDILCRTGYLEEAKSTIE 477 (689)
Q Consensus 399 ~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~ 477 (689)
++|++.|++..+.. +.+...+..+...+...|++++|...|++..+ ..|+ ...+..+...+...+++++|.+.++
T Consensus 91 ~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~---~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 166 (272)
T 3u4t_A 91 SLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIR---PTTTDPKVFYELGQAYYYNKEYVKADSSFV 166 (272)
T ss_dssp HHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCC---SSCCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhh---cCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999842 22456888999999999999999999999883 3554 6777778834445569999999999
Q ss_pred hC-CCCC-CHHHHHHHHHHHHhcCC---hHHHHHHHHHHhhcC---CCC-----chhHHHHHHHHHhcCCcchHHHHHHH
Q 036237 478 SM-PMRP-NFVIWMSLLSGARNHGN---KDIGEYAANNLIKVA---PDT-----IGCYVVLSNIYAAAGQWDKVSEVREM 544 (689)
Q Consensus 478 ~~-~~~p-~~~~~~~ll~~~~~~g~---~~~a~~~~~~~~~~~---p~~-----~~~~~~L~~~~~~~g~~~~A~~~~~~ 544 (689)
++ ...| +...|..+...+...|+ .+.|...+++++++. |+. ..+|..++..|...|++++|.+.+++
T Consensus 167 ~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 246 (272)
T 3u4t_A 167 KVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKN 246 (272)
T ss_dssp HHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 86 2334 47788888888888888 888999999998865 432 25788999999999999999999999
Q ss_pred HHhC
Q 036237 545 MKKR 548 (689)
Q Consensus 545 m~~~ 548 (689)
..+.
T Consensus 247 al~~ 250 (272)
T 3u4t_A 247 ILAL 250 (272)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 8763
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.40 E-value=1.7e-11 Score=113.07 Aligned_cols=164 Identities=15% Similarity=0.120 Sum_probs=130.0
Q ss_pred ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHH
Q 036237 381 KVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPT-AITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCL 459 (689)
Q Consensus 381 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l 459 (689)
+...|..+...|.+.|++++|++.|++..+ +.|+ ..++..+..++...|++++|...++..... .+.+...+..+
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~ 79 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLK--ADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVL--DTTSAEAYYIL 79 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CchhHHHHHHH
Confidence 455677788888888888888888888777 3454 446777777888888888888888887742 23345667777
Q ss_pred HHHHHhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCcch
Q 036237 460 VDILCRTGYLEEAKSTIESM-PMR-PNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDK 537 (689)
Q Consensus 460 i~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~~~~~g~~~~ 537 (689)
...+...+++++|...+.+. ... .+...|..+...+...|++++|+..++++++++|+++.++..++.+|.+.|++++
T Consensus 80 ~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 80 GSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHH
Confidence 78888888888888888775 223 3577888888889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhC
Q 036237 538 VSEVREMMKKR 548 (689)
Q Consensus 538 A~~~~~~m~~~ 548 (689)
|.+.+++..+.
T Consensus 160 A~~~~~~al~~ 170 (184)
T 3vtx_A 160 AVKYFKKALEK 170 (184)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHhC
Confidence 99999888763
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.40 E-value=4.2e-12 Score=125.35 Aligned_cols=242 Identities=11% Similarity=-0.093 Sum_probs=137.3
Q ss_pred CCCHHHHHHHHhcccCC------CChhhHHHHHHHHHhCCCchHHHHHHHHhHhCCCCCCcccHHHHHHHHHhcCChHHH
Q 036237 68 INNLHYARSIFDRILQH------PSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEG 141 (689)
Q Consensus 68 ~g~~~~A~~~f~~~~~~------~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a 141 (689)
.|++++|...|+++... .+..+|..+...+...|++++|...|+++.+.. +.+..++..+...+...|++++|
T Consensus 18 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A 96 (275)
T 1xnf_A 18 TLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAA 96 (275)
T ss_dssp CHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHH
T ss_pred cchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHHH
Confidence 57778888877776521 134567777777778888888888888777653 22456677777777777777777
Q ss_pred HHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhhCCC--CCeehHHHHHHHHHhCCChHHHHHHHhhCCC--C
Q 036237 142 KQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDD--KDLVSWNCLIDGYVKKGEVEVAMKLFDEMPD--R 217 (689)
Q Consensus 142 ~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~ 217 (689)
...++.+++.. +.+..++..+...|.+.|++++|...|+++.+ |+...+...+..+...|++++|...+++... |
T Consensus 97 ~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~ 175 (275)
T 1xnf_A 97 YEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSD 175 (275)
T ss_dssp HHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC
Confidence 77777777764 44566777777777777777777777776642 3333333333444455666666666644432 2
Q ss_pred CcchHHHHHHHHHhCCChHHHHHHHhhcCcCCcchHHHHHHHHHhcCCHHHHHHHHHhcCCCChHHHHHHHHHHHHcCCh
Q 036237 218 DLFSWTCLVDGFSKCGKVEIAREIFYRMPNRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRF 297 (689)
Q Consensus 218 d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~ 297 (689)
+......++..+...++.++|...+..+.+.++.. ...+..+|..+...|...|++
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~------------------------~~~~~~~~~~la~~~~~~g~~ 231 (275)
T 1xnf_A 176 KEQWGWNIVEFYLGNISEQTLMERLKADATDNTSL------------------------AEHLSETNFYLGKYYLSLGDL 231 (275)
T ss_dssp CCSTHHHHHHHHTTSSCHHHHHHHHHHHCCSHHHH------------------------HHHHHHHHHHHHHHHHHTTCH
T ss_pred cchHHHHHHHHHHHhcCHHHHHHHHHHHhcccccc------------------------cccccHHHHHHHHHHHHcCCH
Confidence 11111224444444444445555444443321100 000134566666666677777
Q ss_pred HHHHHHHHHhccCCCCcChhhHHHHHHHHHcccchhhHHHHH
Q 036237 298 MEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMH 339 (689)
Q Consensus 298 ~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~ 339 (689)
++|...|++..... |+. +.....++...|++++|.+.+
T Consensus 232 ~~A~~~~~~al~~~--p~~--~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 232 DSATALFKLAVANN--VHN--FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp HHHHHHHHHHHTTC--CTT--CHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHhCC--chh--HHHHHHHHHHHHHHHhhHHHH
Confidence 77777776666532 322 122233445556666555443
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.39 E-value=6.3e-12 Score=131.71 Aligned_cols=286 Identities=13% Similarity=0.028 Sum_probs=183.0
Q ss_pred chHHHHHHHHHhCCChHHHHHHHhhcCc--CC-----cchHHHHHHHHHhcCCHHHHHHHHHhcCC-----C----ChHH
Q 036237 220 FSWTCLVDGFSKCGKVEIAREIFYRMPN--RN-----LVSWNAMINGYMKAGDVDSACELFDDMEI-----R----DLIT 283 (689)
Q Consensus 220 ~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~-----~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~----~~~~ 283 (689)
..+......+...|++++|...|+++.+ ++ ..++..+...|...|++++|...|++... . ...+
T Consensus 10 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 89 (406)
T 3sf4_A 10 LELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKA 89 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHH
Confidence 3455566667777777777777777664 22 23556666667777777777766665431 0 2345
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHhccCCCC-cChhhHHHHHHHHHcccchhhHHHHHHHHHHhCCccchhHHhHHHhhHH
Q 036237 284 WNSMIAGYELNGRFMEALELLETMLIGDVL-PNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYS 362 (689)
Q Consensus 284 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~ 362 (689)
|..+...|...|++++|+..+++....... ++. .....++..+...|.
T Consensus 90 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~-------------------------------~~~~~~~~~l~~~~~ 138 (406)
T 3sf4_A 90 SGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDK-------------------------------VGEARALYNLGNVYH 138 (406)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH-------------------------------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccc-------------------------------cchHHHHHHHHHHHH
Confidence 566666666667777776666665431100 000 001223444445555
Q ss_pred hcCC--------------------HHHHHHHHHhcCC-----C----ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCC
Q 036237 363 KCGS--------------------IESALTVFRAISK-----K----KVGHWTAMIVGLGMHGMATQALDLFNKMCRMGM 413 (689)
Q Consensus 363 ~~g~--------------------~~~A~~~~~~~~~-----~----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 413 (689)
..|+ +++|.+.|++... . ...+|..+...|...|++++|+..|++..+...
T Consensus 139 ~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 218 (406)
T 3sf4_A 139 AKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAK 218 (406)
T ss_dssp HHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHH
T ss_pred HcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHH
Confidence 5555 5555555544321 1 133677778888888888888888887765210
Q ss_pred -CCC----HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC----hhHHHHHHHHHHhcCCHHHHHHHHHhCC----
Q 036237 414 -KPT----AITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPT----IEHYGCLVDILCRTGYLEEAKSTIESMP---- 480 (689)
Q Consensus 414 -~p~----~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~~~---- 480 (689)
.++ ..++..+...+...|++++|...++.......-.++ ..++..+...|...|++++|...+++.-
T Consensus 219 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 298 (406)
T 3sf4_A 219 EFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQ 298 (406)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred hcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHH
Confidence 112 226777778888889999998888877642211112 4577888889999999999998887751
Q ss_pred CCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHhhcCC------CCchhHHHHHHHHHhcCCcc
Q 036237 481 MRPN----FVIWMSLLSGARNHGNKDIGEYAANNLIKVAP------DTIGCYVVLSNIYAAAGQWD 536 (689)
Q Consensus 481 ~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p------~~~~~~~~L~~~~~~~g~~~ 536 (689)
..++ ..++..+...+...|++++|...+++++++.+ ....++..++.+|...|+..
T Consensus 299 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 364 (406)
T 3sf4_A 299 ELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSY 364 (406)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTS
T ss_pred hcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhH
Confidence 1122 55788888899999999999999999988532 23557788888888888764
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.38 E-value=3.3e-12 Score=136.88 Aligned_cols=206 Identities=10% Similarity=-0.017 Sum_probs=172.5
Q ss_pred hhHHHHHHHHHHhCCccchhHHhHHHhhHHhcCCH-HHHHHHHHhcCC---CChhhHHHHHHHHHHcCCHHHHHHHHHHH
Q 036237 333 NKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSI-ESALTVFRAISK---KKVGHWTAMIVGLGMHGMATQALDLFNKM 408 (689)
Q Consensus 333 ~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~-~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m 408 (689)
+.+.+.+....+. .+.+...+..+...|...|++ ++|++.|++..+ .+...|..+...|.+.|++++|++.|++.
T Consensus 85 ~~al~~l~~~~~~-~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~a 163 (474)
T 4abn_A 85 EKTLQQMEEVLGS-AQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGA 163 (474)
T ss_dssp HHHHHHHHHHHTT-CCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcc-CchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3344444433322 234567777788888888888 888888887754 45778999999999999999999999999
Q ss_pred HHCCCCCCHHHHHHHHHHHhcc---------CcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhc--------CCHH
Q 036237 409 CRMGMKPTAITFIGVLNACSHA---------GLVNDGRRYFNMMINDYGIEPT-IEHYGCLVDILCRT--------GYLE 470 (689)
Q Consensus 409 ~~~g~~p~~~t~~~ll~a~~~~---------g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~--------g~~~ 470 (689)
.+ +.|+...+..+...+... |++++|...|++..+ +.|+ ...|..+..+|... |+++
T Consensus 164 l~--~~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~ 238 (474)
T 4abn_A 164 LT--HCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQ---MDVLDGRSWYILGNAYLSLYFNTGQNPKISQ 238 (474)
T ss_dssp HT--TCCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred Hh--hCCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHHHHhhccccchHH
Confidence 98 568878888899999999 999999999999984 3454 78899999999999 9999
Q ss_pred HHHHHHHhC-CCCC----CHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCcchHHHHHHH
Q 036237 471 EAKSTIESM-PMRP----NFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREM 544 (689)
Q Consensus 471 ~A~~~~~~~-~~~p----~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~~~~~g~~~~A~~~~~~ 544 (689)
+|.+.|++. ...| +...|..+...+...|++++|...++++++++|+++.++..++.++...|++++|.+.+.+
T Consensus 239 ~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~ 317 (474)
T 4abn_A 239 QALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKGK 317 (474)
T ss_dssp HHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 999999986 3345 7889999999999999999999999999999999999999999999999999999875543
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.37 E-value=1.3e-11 Score=127.54 Aligned_cols=224 Identities=12% Similarity=0.083 Sum_probs=190.7
Q ss_pred hhHHHHHHHHHcccchhhHHHHHHHHHHhCCccchhHHhHHHhhHHhcCC-HHHHHHHHHhcCC---CChhhHHHHHHHH
Q 036237 317 ATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGS-IESALTVFRAISK---KKVGHWTAMIVGL 392 (689)
Q Consensus 317 ~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~-~~~A~~~~~~~~~---~~~~~~~~li~~~ 392 (689)
..|..+...+...|++++|...+..+++.. +.+..+++.+...|.+.|+ +++|+..|+++.. .+...|+.+...|
T Consensus 98 ~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~ 176 (382)
T 2h6f_A 98 DVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLV 176 (382)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 345666677888999999999999999876 4467888999999999997 9999999998875 4678999999999
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHh-cCCH
Q 036237 393 GMHGMATQALDLFNKMCRMGMKPT-AITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPT-IEHYGCLVDILCR-TGYL 469 (689)
Q Consensus 393 ~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~-~g~~ 469 (689)
...|++++|+..|+++.+ +.|+ ...|..+..++...|++++|+..|+++++ +.|+ ...|+.+..+|.+ .|..
T Consensus 177 ~~~g~~~eAl~~~~kal~--ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~---l~P~~~~a~~~lg~~l~~l~~~~ 251 (382)
T 2h6f_A 177 EWLRDPSQELEFIADILN--QDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLK---EDVRNNSVWNQRYFVISNTTGYN 251 (382)
T ss_dssp HHHTCCTTHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCSC
T ss_pred HHccCHHHHHHHHHHHHH--hCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHhcCcc
Confidence 999999999999999998 4554 56889999999999999999999999994 3454 7889999999999 6665
Q ss_pred HHH-----HHHHHhC-CCCC-CHHHHHHHHHHHHhcC--ChHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcC-------
Q 036237 470 EEA-----KSTIESM-PMRP-NFVIWMSLLSGARNHG--NKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAG------- 533 (689)
Q Consensus 470 ~~A-----~~~~~~~-~~~p-~~~~~~~ll~~~~~~g--~~~~a~~~~~~~~~~~p~~~~~~~~L~~~~~~~g------- 533 (689)
++| ++.+++. ...| +...|..+...+...| ++++|+..++++ +.+|+++.++..|+.+|.+.|
T Consensus 252 ~eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~~~~ 330 (382)
T 2h6f_A 252 DRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLENQCDNK 330 (382)
T ss_dssp SHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTCSSH
T ss_pred hHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhcccccch
Confidence 777 4667664 3445 5779999999998888 689999999998 999999999999999999875
Q ss_pred --CcchHHHHHHHH-Hh
Q 036237 534 --QWDKVSEVREMM-KK 547 (689)
Q Consensus 534 --~~~~A~~~~~~m-~~ 547 (689)
.+++|.++++++ .+
T Consensus 331 ~~~~~~A~~~~~~l~~~ 347 (382)
T 2h6f_A 331 EDILNKALELCEILAKE 347 (382)
T ss_dssp HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 358999999988 44
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.34 E-value=2.2e-09 Score=118.36 Aligned_cols=413 Identities=12% Similarity=0.024 Sum_probs=273.3
Q ss_pred CCChhhHHHHHHHHHhCCCchHHHHHHHHhHhCCCCCCcccHHHHHHHHHhcCC---hHHHHHHHHHHHHhC-CCCchhH
Q 036237 84 HPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGA---IKEGKQIHGLVFKLG-FGFDKFV 159 (689)
Q Consensus 84 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~---~~~a~~~~~~~~~~g-~~~~~~~ 159 (689)
+.|..+|..++..+.+.+..+.+..+|+++... .+.+...|...+..-.+.++ .+.+..+|++.+... .+|++..
T Consensus 63 p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~sv~L 141 (679)
T 4e6h_A 63 PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR-FPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDLSL 141 (679)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCCHHH
T ss_pred cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCCHHH
Confidence 468889999999999999999999999999876 23345567777777777788 999999999998764 2478888
Q ss_pred HHHHHHHHHhcCCh--------HHHHHHHhhCC------CC-CeehHHHHHHHHH---------hCCChHHHHHHHhhCC
Q 036237 160 LSSLVSMYAKFGEI--------DLGRRVFDAMD------DK-DLVSWNCLIDGYV---------KKGEVEVAMKLFDEMP 215 (689)
Q Consensus 160 ~~~li~~~~~~g~~--------~~A~~~~~~m~------~~-~~~~~~~li~~~~---------~~g~~~~A~~~~~~m~ 215 (689)
|...+....+.++. +...++|+... .+ +...|...+.-.. .+++++.+..+|++..
T Consensus 142 W~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~raL 221 (679)
T 4e6h_A 142 WLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLL 221 (679)
T ss_dssp HHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHHH
Confidence 88888776666654 33447777532 22 3456877776543 2345677888888877
Q ss_pred CCCcchHHHHHHHHHh---CCChHHHHHHHhhcCcCCcchHHHHHHHHHhcCCHHHHHHHHHh-------cCC-------
Q 036237 216 DRDLFSWTCLVDGFSK---CGKVEIAREIFYRMPNRNLVSWNAMINGYMKAGDVDSACELFDD-------MEI------- 278 (689)
Q Consensus 216 ~~d~~~~~~li~~~~~---~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~-------~~~------- 278 (689)
.-....+..+-..|.. .-+...+.+++.+ ...+++.|...+.+ +..
T Consensus 222 ~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e-----------------~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~ 284 (679)
T 4e6h_A 222 CQPMDCLESMWQRYTQWEQDVNQLTARRHIGE-----------------LSAQYMNARSLYQDWLNITKGLKRNLPITLN 284 (679)
T ss_dssp TSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHH-----------------HHHHHHHHHHHHHHHHHHTTTCCCCCCSSST
T ss_pred hCccHHHHHHHHHHHHHHHhcCcchHHHHHHH-----------------hhHHHHHHHHHHHHHHHHHHhHhhccccccc
Confidence 5211112222211111 0000012121111 01122223333322 110
Q ss_pred -------C--------ChHHHHHHHHHHHHcC-------ChHHHHHHHHHhccCCCCcChhhHHHHHHHHHcccchhhHH
Q 036237 279 -------R--------DLITWNSMIAGYELNG-------RFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGR 336 (689)
Q Consensus 279 -------~--------~~~~~~~li~~~~~~g-------~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~ 336 (689)
| -...|...+.---.++ ..+.+..+|++.+.. .+-+...|.....-+...|+.+.|.
T Consensus 285 ~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~~~~a~ 363 (679)
T 4e6h_A 285 QATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH-VCFAPEIWFNMANYQGEKNTDSTVI 363 (679)
T ss_dssp TCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHSCCTTHH
T ss_pred cchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHhcCcHHHHH
Confidence 0 0234665555333322 123456678777764 2335556666666667778888896
Q ss_pred -HHHHHHHHhCCccchhHHhHHHhhHHhcCCHHHHHHHHHhcCC-------------CC------------hhhHHHHHH
Q 036237 337 -WMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISK-------------KK------------VGHWTAMIV 390 (689)
Q Consensus 337 -~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-------------~~------------~~~~~~li~ 390 (689)
.+++..+... +.+..++-..+...-+.|+++.|.++|+++.. |+ ...|...+.
T Consensus 364 r~il~rAi~~~-P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~ 442 (679)
T 4e6h_A 364 TKYLKLGQQCI-PNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMN 442 (679)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHH
Confidence 9999998753 45677788888899999999999999998764 21 236888888
Q ss_pred HHHHcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHhc-cCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCC
Q 036237 391 GLGMHGMATQALDLFNKMCRM-GMKPTAITFIGVLNACSH-AGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGY 468 (689)
Q Consensus 391 ~~~~~g~~~~A~~l~~~m~~~-g~~p~~~t~~~ll~a~~~-~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~ 468 (689)
...+.|..+.|..+|.+..+. + .+....|......-.+ .++.+.|..+|+...+. .+-+...+...++.....|+
T Consensus 443 ~erR~~~l~~AR~vf~~A~~~~~-~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~--~p~~~~~w~~y~~fe~~~~~ 519 (679)
T 4e6h_A 443 TMKRIQGLAASRKIFGKCRRLKK-LVTPDIYLENAYIEYHISKDTKTACKVLELGLKY--FATDGEYINKYLDFLIYVNE 519 (679)
T ss_dssp HHHHHHCHHHHHHHHHHHHHTGG-GSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHHTC
T ss_pred HHHHcCCHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--CCCchHHHHHHHHHHHhCCC
Confidence 888899999999999999875 2 1123334322222223 35589999999999964 33456677888999999999
Q ss_pred HHHHHHHHHhCC-CCC----CHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCc
Q 036237 469 LEEAKSTIESMP-MRP----NFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTI 519 (689)
Q Consensus 469 ~~~A~~~~~~~~-~~p----~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 519 (689)
.+.|..+|++.- ..| ....|...+.--..+|+.+.+..+.+++.+..|+++
T Consensus 520 ~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~~~ 575 (679)
T 4e6h_A 520 ESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPEVN 575 (679)
T ss_dssp HHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTTCC
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCc
Confidence 999999999862 223 345888888888999999999999999999999875
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.34 E-value=8e-12 Score=131.46 Aligned_cols=265 Identities=14% Similarity=0.049 Sum_probs=169.4
Q ss_pred hHHHHHHHHHhCCChHHHHHHHhhcCc--CC-c----chHHHHHHHHHhcCCHHHHHHHHHhcCCC---------ChHHH
Q 036237 221 SWTCLVDGFSKCGKVEIAREIFYRMPN--RN-L----VSWNAMINGYMKAGDVDSACELFDDMEIR---------DLITW 284 (689)
Q Consensus 221 ~~~~li~~~~~~g~~~~A~~~~~~~~~--~~-~----~~~~~li~~~~~~g~~~~A~~~~~~~~~~---------~~~~~ 284 (689)
.+..+...+...|++++|...|+++.+ ++ . .++..+...|...|++++|...|++.... ...+|
T Consensus 50 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 129 (411)
T 4a1s_A 50 ELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSS 129 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHH
Confidence 344455566777777777777777664 22 1 35566666666677777666666654321 23455
Q ss_pred HHHHHHHHHcCChHHHHHHHHHhccCCCCcChhhHHHHHHHHHcccchhhHHHHHHHHHHhC-CccchhHHhHHHhhHHh
Q 036237 285 NSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNG-FVVDGVLGTLLIQMYSK 363 (689)
Q Consensus 285 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g-~~~~~~~~~~li~~~~~ 363 (689)
..+...|...|++++|+..|++...... +.+ .+....++..+...|..
T Consensus 130 ~~l~~~~~~~g~~~~A~~~~~~al~~~~-------------------------------~~~~~~~~~~~~~~l~~~~~~ 178 (411)
T 4a1s_A 130 GNLGNTLKVMGRFDEAAICCERHLTLAR-------------------------------QLGDRLSEGRALYNLGNVYHA 178 (411)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHH-------------------------------HHTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHH-------------------------------HhhchHHHHHHHHHHHHHHHH
Confidence 5666666666666666666666543100 000 01123344445555555
Q ss_pred cCC-----------------HHHHHHHHHhcCC-----C----ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-CCC
Q 036237 364 CGS-----------------IESALTVFRAISK-----K----KVGHWTAMIVGLGMHGMATQALDLFNKMCRMGM-KPT 416 (689)
Q Consensus 364 ~g~-----------------~~~A~~~~~~~~~-----~----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~ 416 (689)
.|+ +++|.+.|++... . ....|..+...|...|++++|+..|++..+... .++
T Consensus 179 ~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 258 (411)
T 4a1s_A 179 KGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGD 258 (411)
T ss_dssp HHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC
T ss_pred cCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCC
Confidence 555 5555555554322 1 233677778888888888888888888765311 011
Q ss_pred ----HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC----hhHHHHHHHHHHhcCCHHHHHHHHHhCC-------C
Q 036237 417 ----AITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPT----IEHYGCLVDILCRTGYLEEAKSTIESMP-------M 481 (689)
Q Consensus 417 ----~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~~~-------~ 481 (689)
..++..+...+...|++++|...++.......-..+ ...+..+...|...|++++|...+++.- .
T Consensus 259 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 338 (411)
T 4a1s_A 259 RAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGD 338 (411)
T ss_dssp HHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC
T ss_pred cHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCC
Confidence 226777788888899999999988877642211111 4677888899999999999999888761 1
Q ss_pred CC-CHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCC
Q 036237 482 RP-NFVIWMSLLSGARNHGNKDIGEYAANNLIKVAP 516 (689)
Q Consensus 482 ~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p 516 (689)
.+ ...++..+...+...|++++|...+++++++.+
T Consensus 339 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 374 (411)
T 4a1s_A 339 RIGEARACWSLGNAHSAIGGHERALKYAEQHLQLAX 374 (411)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred hHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHh
Confidence 11 244778888899999999999999999998776
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.32 E-value=2e-11 Score=136.20 Aligned_cols=162 Identities=16% Similarity=0.196 Sum_probs=137.9
Q ss_pred ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC-hhHHHH
Q 036237 381 KVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPT-AITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPT-IEHYGC 458 (689)
Q Consensus 381 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~ 458 (689)
+..+|+.|...|.+.|++++|++.|++..+ +.|+ ..++..+..++.+.|++++|+..|++..+ +.|+ ...|..
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~--l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~---l~P~~~~a~~n 82 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALE--VFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR---ISPTFADAYSN 82 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHH
Confidence 345788888888888888888888888887 4565 45788888888889999999999988873 4565 678888
Q ss_pred HHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCcc
Q 036237 459 LVDILCRTGYLEEAKSTIESM-PMRP-NFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWD 536 (689)
Q Consensus 459 li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~~~~~g~~~ 536 (689)
+..+|.+.|++++|++.|++. .+.| +...|..+...+...|++++|+..++++++++|+++.++..|+.+|...|+|+
T Consensus 83 Lg~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~ 162 (723)
T 4gyw_A 83 MGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWT 162 (723)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHH
Confidence 999999999999999998876 3445 57789999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHh
Q 036237 537 KVSEVREMMKK 547 (689)
Q Consensus 537 ~A~~~~~~m~~ 547 (689)
+|.+.+++..+
T Consensus 163 ~A~~~~~kal~ 173 (723)
T 4gyw_A 163 DYDERMKKLVS 173 (723)
T ss_dssp THHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99998887653
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.32 E-value=5.7e-11 Score=120.51 Aligned_cols=265 Identities=12% Similarity=0.019 Sum_probs=161.7
Q ss_pred HHHHHHHHHhCCChHHHHHHHhhcCc--CC-----cchHHHHHHHHHhcCCHHHHHHHHHhcCCC---------ChHHHH
Q 036237 222 WTCLVDGFSKCGKVEIAREIFYRMPN--RN-----LVSWNAMINGYMKAGDVDSACELFDDMEIR---------DLITWN 285 (689)
Q Consensus 222 ~~~li~~~~~~g~~~~A~~~~~~~~~--~~-----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---------~~~~~~ 285 (689)
+......+...|++++|...|+++.+ ++ ..++..+...|...|++++|...|++.... ...+|.
T Consensus 8 l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 87 (338)
T 3ro2_A 8 LALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASG 87 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHH
Confidence 33445556677777777777776654 22 244556666666666666666666554311 234555
Q ss_pred HHHHHHHHcCChHHHHHHHHHhccCCCC-cChhhHHHHHHHHHcccchhhHHHHHHHHHHhCCccchhHHhHHHhhHHhc
Q 036237 286 SMIAGYELNGRFMEALELLETMLIGDVL-PNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKC 364 (689)
Q Consensus 286 ~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~ 364 (689)
.+...|...|++++|+..+++....... ++.. ....++..+...|...
T Consensus 88 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-------------------------------~~~~~~~~l~~~~~~~ 136 (338)
T 3ro2_A 88 NLGNTLKVLGNFDEAIVCCQRHLDISRELNDKV-------------------------------GEARALYNLGNVYHAK 136 (338)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH-------------------------------HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHHHHHhcCch-------------------------------HHHHHHHHHHHHHHHc
Confidence 5666666666666666666665431100 0100 0122344444555555
Q ss_pred CC--------------------HHHHHHHHHhcCC-----C----ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-C
Q 036237 365 GS--------------------IESALTVFRAISK-----K----KVGHWTAMIVGLGMHGMATQALDLFNKMCRMGM-K 414 (689)
Q Consensus 365 g~--------------------~~~A~~~~~~~~~-----~----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~ 414 (689)
|+ +++|.+.+++... . ....+..+...|...|++++|++.+++..+... .
T Consensus 137 ~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~ 216 (338)
T 3ro2_A 137 GKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEF 216 (338)
T ss_dssp HHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred CcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhc
Confidence 55 5555555544321 1 123567777778888888888888887664210 1
Q ss_pred CC----HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC----hhHHHHHHHHHHhcCCHHHHHHHHHhCC----CC
Q 036237 415 PT----AITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPT----IEHYGCLVDILCRTGYLEEAKSTIESMP----MR 482 (689)
Q Consensus 415 p~----~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~~~----~~ 482 (689)
++ ..++..+...+...|++++|..+++.......-.++ ...+..+...|...|++++|...++++- ..
T Consensus 217 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 296 (338)
T 3ro2_A 217 GDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQEL 296 (338)
T ss_dssp TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhc
Confidence 11 226677777888888888888888877642211122 4567788888999999999988887751 01
Q ss_pred CC----HHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCC
Q 036237 483 PN----FVIWMSLLSGARNHGNKDIGEYAANNLIKVAPD 517 (689)
Q Consensus 483 p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 517 (689)
++ ..++..+...+...|++++|...+++++++.+.
T Consensus 297 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 335 (338)
T 3ro2_A 297 KDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE 335 (338)
T ss_dssp TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC---
T ss_pred CCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHh
Confidence 12 447778888999999999999999999987663
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.29 E-value=8e-11 Score=108.46 Aligned_cols=166 Identities=12% Similarity=0.060 Sum_probs=141.2
Q ss_pred chhHHhHHHhhHHhcCCHHHHHHHHHhcCC---CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHH
Q 036237 350 DGVLGTLLIQMYSKCGSIESALTVFRAISK---KKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPT-AITFIGVLN 425 (689)
Q Consensus 350 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~ 425 (689)
++.+|..|...|.+.|++++|++.|++..+ .++.+|..+...|.+.|++++|+..+.+.... .|+ ...+..+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~ 81 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVL--DTTSAEAYYILGS 81 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CchhHHHHHHHHH
Confidence 567788899999999999999999998764 46778999999999999999999999998874 344 556777778
Q ss_pred HHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHH
Q 036237 426 ACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESM-PMRP-NFVIWMSLLSGARNHGNKDI 503 (689)
Q Consensus 426 a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~ 503 (689)
.+...++++.|...+...... .+.+...+..+...|.+.|++++|++.|++. ...| +..+|..+...+...|++++
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~--~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIAL--NTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHH
Confidence 888999999999999998842 2334788899999999999999999999886 3334 67799999999999999999
Q ss_pred HHHHHHHHhhcCCCCc
Q 036237 504 GEYAANNLIKVAPDTI 519 (689)
Q Consensus 504 a~~~~~~~~~~~p~~~ 519 (689)
|+..++++++++|+++
T Consensus 160 A~~~~~~al~~~p~~a 175 (184)
T 3vtx_A 160 AVKYFKKALEKEEKKA 175 (184)
T ss_dssp HHHHHHHHHHTTHHHH
T ss_pred HHHHHHHHHhCCccCH
Confidence 9999999999999753
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.29 E-value=6.9e-10 Score=111.65 Aligned_cols=184 Identities=9% Similarity=0.023 Sum_probs=104.8
Q ss_pred hhHHHHHHHHHHhCCccchhHHhHHHhhHHhcCCHHHHHHHHHhcCC--C-Chh-hHHHHHHHHHHcCCHHHHHHHHHHH
Q 036237 333 NKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISK--K-KVG-HWTAMIVGLGMHGMATQALDLFNKM 408 (689)
Q Consensus 333 ~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~-~~~~li~~~~~~g~~~~A~~l~~~m 408 (689)
++|..+++.+++.-.+.+...+..++..+.+.|++++|.++|+++.+ | +.. .|..++..+.+.|++++|..+|++.
T Consensus 81 ~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a 160 (308)
T 2ond_A 81 DEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKA 160 (308)
T ss_dssp HHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 55555555555521123344566666666666666666666666554 2 232 5666666666666777777777666
Q ss_pred HHCCCCCCHHHHHHHHHHHh-ccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCC----CCC
Q 036237 409 CRMGMKPTAITFIGVLNACS-HAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMP----MRP 483 (689)
Q Consensus 409 ~~~g~~p~~~t~~~ll~a~~-~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~----~~p 483 (689)
.+.. +++...|........ ..|+.++|..+|+...+.. +-+...|..+++.+.+.|++++|..+|++.- ..|
T Consensus 161 ~~~~-p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p 237 (308)
T 2ond_A 161 REDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY--GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPP 237 (308)
T ss_dssp HTST-TCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH--TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCG
T ss_pred HhcC-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCH
Confidence 6532 122233332222211 2566777777776666421 2235666666666666677777776666641 233
Q ss_pred --CHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCc
Q 036237 484 --NFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTI 519 (689)
Q Consensus 484 --~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 519 (689)
....|..++......|+.+.|..+++++++..|+++
T Consensus 238 ~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~~p~~~ 275 (308)
T 2ond_A 238 EKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREEY 275 (308)
T ss_dssp GGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTTT
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccccc
Confidence 345666666666666777777777777666666543
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.28 E-value=6.6e-11 Score=123.26 Aligned_cols=195 Identities=12% Similarity=0.019 Sum_probs=116.7
Q ss_pred hHHhHHHhhHHhcCCHHHHHHHHHhcCC-----CC-----hhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-CCC----
Q 036237 352 VLGTLLIQMYSKCGSIESALTVFRAISK-----KK-----VGHWTAMIVGLGMHGMATQALDLFNKMCRMGM-KPT---- 416 (689)
Q Consensus 352 ~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~-----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~---- 416 (689)
.++..+...|...|++++|...+++... ++ ..+++.+...|...|++++|++.|++..+... .++
T Consensus 144 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 223 (383)
T 3ulq_A 144 EFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLM 223 (383)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHH
Confidence 3444555555566666655555554432 11 23566666777777777777777776654210 011
Q ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHhHHhc---CCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhCC------CCCC-H
Q 036237 417 AITFIGVLNACSHAGLVNDGRRYFNMMINDY---GIEPT-IEHYGCLVDILCRTGYLEEAKSTIESMP------MRPN-F 485 (689)
Q Consensus 417 ~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~---~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~------~~p~-~ 485 (689)
..++..+...+...|++++|...|++...-. +..|+ ..++..+...|.+.|++++|...+++.- ..|. .
T Consensus 224 ~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 303 (383)
T 3ulq_A 224 GRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYL 303 (383)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHH
Confidence 1256666677777777777777777665311 22122 4566777777777777777777776641 0111 2
Q ss_pred HHHHHHHHHHHhcCC---hHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCcchHHHHHHHHHh
Q 036237 486 VIWMSLLSGARNHGN---KDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKK 547 (689)
Q Consensus 486 ~~~~~ll~~~~~~g~---~~~a~~~~~~~~~~~p~~~~~~~~L~~~~~~~g~~~~A~~~~~~m~~ 547 (689)
..+..+...+...|+ .+.|...+++. ...|.....+..|+.+|...|++++|...+++..+
T Consensus 304 ~~~~~l~~~~~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 304 SEFEFLKSLYLSGPDEEAIQGFFDFLESK-MLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHHHHHHHTSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHC-cCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 234555666666677 66666666655 23333445677888888888888888888887753
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.27 E-value=1.4e-10 Score=120.83 Aligned_cols=230 Identities=7% Similarity=-0.025 Sum_probs=166.8
Q ss_pred HHHHHHHcCChHHHHHHHHHhccC----CCCc-ChhhHHHHHHHHHcccchhhHHHHHHHHHHhCC------ccchhHHh
Q 036237 287 MIAGYELNGRFMEALELLETMLIG----DVLP-NDATLVSALSAVAGLAVLNKGRWMHSYIVKNGF------VVDGVLGT 355 (689)
Q Consensus 287 li~~~~~~g~~~~A~~~~~~m~~~----g~~p-~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~------~~~~~~~~ 355 (689)
....+...|++++|+..|++.... +-.+ ...++..+...+...|+++.|...+..+.+.-. +....+++
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 444566677777777777776542 1111 123455566666777777777777766655311 11245677
Q ss_pred HHHhhHHhcCCHHHHHHHHHhcCC-----CC----hhhHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCCC-HHHHH
Q 036237 356 LLIQMYSKCGSIESALTVFRAISK-----KK----VGHWTAMIVGLGMHGMATQALDLFNKMCRM----GMKPT-AITFI 421 (689)
Q Consensus 356 ~li~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p~-~~t~~ 421 (689)
.+...|...|++++|.+.|++... ++ ..++..+...|...|++++|++.|++..+. +..|+ ..++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 788889999999999998887653 12 237888999999999999999999998762 33243 45788
Q ss_pred HHHHHHhccCcHHHHHHHHHHhHHhcCCCCC---hhHHHHHHHHHHhcCC---HHHHHHHHHhCCCCCCH-HHHHHHHHH
Q 036237 422 GVLNACSHAGLVNDGRRYFNMMINDYGIEPT---IEHYGCLVDILCRTGY---LEEAKSTIESMPMRPNF-VIWMSLLSG 494 (689)
Q Consensus 422 ~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~---~~~~~~li~~~~~~g~---~~~A~~~~~~~~~~p~~-~~~~~ll~~ 494 (689)
.+...+...|++++|...+++...-..-..+ ...+..+...|...|+ +++|..++++.+..|+. ..+..+...
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~ 348 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKMLYADLEDFAIDVAKY 348 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 8889999999999999999988742211112 3346778899999999 99999999998655543 367788899
Q ss_pred HHhcCChHHHHHHHHHHhhcCC
Q 036237 495 ARNHGNKDIGEYAANNLIKVAP 516 (689)
Q Consensus 495 ~~~~g~~~~a~~~~~~~~~~~p 516 (689)
+...|+++.|...+++++++..
T Consensus 349 y~~~g~~~~A~~~~~~al~~~~ 370 (383)
T 3ulq_A 349 YHERKNFQKASAYFLKVEQVRQ 370 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHT
T ss_pred HHHCCCHHHHHHHHHHHHHHHH
Confidence 9999999999999999987543
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.27 E-value=1.4e-11 Score=123.93 Aligned_cols=237 Identities=13% Similarity=0.113 Sum_probs=124.0
Q ss_pred ChHHHHHHHHHHHHcCChHHHHHHHHHhccC-------CCCcChhhHHHHHHHHHcccchhhHHHHHHHHHHh------C
Q 036237 280 DLITWNSMIAGYELNGRFMEALELLETMLIG-------DVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKN------G 346 (689)
Q Consensus 280 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-------g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~------g 346 (689)
+..+|..+...|...|++++|+.+|+++.+. ........+..+...+...|++++|...+..+++. +
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 105 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK 105 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 3466788888888888888888888887652 11112233344444445555555555555444432 1
Q ss_pred C-ccchhHHhHHHhhHHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHC------CCCCC-HH
Q 036237 347 F-VVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRM------GMKPT-AI 418 (689)
Q Consensus 347 ~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~------g~~p~-~~ 418 (689)
- +... ..|..+...|...|++++|++.|++..+. +-.|+ ..
T Consensus 106 ~~~~~~-------------------------------~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 154 (311)
T 3nf1_A 106 DHPAVA-------------------------------ATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAK 154 (311)
T ss_dssp TCHHHH-------------------------------HHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred CChHHH-------------------------------HHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHH
Confidence 0 1112 34555555555556666665555555442 11122 22
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHhHHhc-----CCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhCC----------CC
Q 036237 419 TFIGVLNACSHAGLVNDGRRYFNMMINDY-----GIEPT-IEHYGCLVDILCRTGYLEEAKSTIESMP----------MR 482 (689)
Q Consensus 419 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~-----~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~----------~~ 482 (689)
.+..+...+...|++++|..+++.+.... +..|. ...+..+...|.+.|++++|.+.++++- ..
T Consensus 155 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 234 (311)
T 3nf1_A 155 QLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVD 234 (311)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCC
Confidence 45555556666666666666666655321 11121 3455566666666666666666665541 01
Q ss_pred CC-------HHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCcchHHHHHHHHHh
Q 036237 483 PN-------FVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKK 547 (689)
Q Consensus 483 p~-------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~~~~~g~~~~A~~~~~~m~~ 547 (689)
+. ...+..+...+...+.+..+...++.+....|..+.++..++.+|.+.|++++|.+++++..+
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 235 DENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp ---CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 11 112222233344445666666677777777777777888888888888888888888887654
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.24 E-value=2.7e-10 Score=104.50 Aligned_cols=160 Identities=13% Similarity=0.076 Sum_probs=101.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHH
Q 036237 385 WTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILC 464 (689)
Q Consensus 385 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~ 464 (689)
|..+...+...|++++|+..|+++.+.. +.+...+..+...+...|++++|..+++.+.+. .+.+...+..+...|.
T Consensus 11 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~ 87 (186)
T 3as5_A 11 YRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLAD--APDNVKVATVLGLTYV 87 (186)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHH
Confidence 4444445555555555555555544321 123344555555555556666666665555532 1223455566666666
Q ss_pred hcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCcchHHHHH
Q 036237 465 RTGYLEEAKSTIESMP--MRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVR 542 (689)
Q Consensus 465 ~~g~~~~A~~~~~~~~--~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~~~~~g~~~~A~~~~ 542 (689)
..|++++|.+.++++. .+.+...|..+...+...|++++|...++++++..|+++..+..++.+|...|++++|...+
T Consensus 88 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 167 (186)
T 3as5_A 88 QVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHF 167 (186)
T ss_dssp HHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHHH
Confidence 6666666666666541 22356677777777888888888888888888888888888888888888888888888888
Q ss_pred HHHHh
Q 036237 543 EMMKK 547 (689)
Q Consensus 543 ~~m~~ 547 (689)
++..+
T Consensus 168 ~~~~~ 172 (186)
T 3as5_A 168 KKANE 172 (186)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 87765
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.23 E-value=1.9e-11 Score=122.82 Aligned_cols=237 Identities=11% Similarity=0.037 Sum_probs=145.3
Q ss_pred cchHHHHHHHHHhcCCHHHHHHHHHhcCC--------C---ChHHHHHHHHHHHHcCChHHHHHHHHHhccC------CC
Q 036237 250 LVSWNAMINGYMKAGDVDSACELFDDMEI--------R---DLITWNSMIAGYELNGRFMEALELLETMLIG------DV 312 (689)
Q Consensus 250 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~--------~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~ 312 (689)
..++..+...|...|++++|..+|+++.+ . ...+|..+...|...|++++|+..|++.... +-
T Consensus 27 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 106 (311)
T 3nf1_A 27 LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKD 106 (311)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 56788899999999999999999998764 2 3467888999999999999999999998753 11
Q ss_pred -CcChhhHHHHHHHHHcccchhhHHHHHHHHHHhC------C-ccchhHHhHHHhhHHhcCCHHHHHHHHHhcCCCChhh
Q 036237 313 -LPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNG------F-VVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGH 384 (689)
Q Consensus 313 -~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g------~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~ 384 (689)
......+..+...+...|++++|...+..+.+.. . +.... .
T Consensus 107 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~-------------------------------~ 155 (311)
T 3nf1_A 107 HPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAK-------------------------------Q 155 (311)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHH-------------------------------H
T ss_pred ChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHH-------------------------------H
Confidence 2234456667777777888888888777766531 1 11222 3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHC------CCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhHHhc------CCCC
Q 036237 385 WTAMIVGLGMHGMATQALDLFNKMCRM------GMKPT-AITFIGVLNACSHAGLVNDGRRYFNMMINDY------GIEP 451 (689)
Q Consensus 385 ~~~li~~~~~~g~~~~A~~l~~~m~~~------g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~------~~~p 451 (689)
|..+...|...|++++|++.|+++.+. +..|+ ..++..+...+...|++++|..+++.+.... ...+
T Consensus 156 ~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 235 (311)
T 3nf1_A 156 LNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDD 235 (311)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCc
Confidence 444555555555555555555555442 11222 2245555566666666666666666655310 1111
Q ss_pred Ch-------hHHHHHHHHHHhcCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCC
Q 036237 452 TI-------EHYGCLVDILCRTGYLEEAKSTIESMP-MRP-NFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPD 517 (689)
Q Consensus 452 ~~-------~~~~~li~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 517 (689)
.. ..+..+...+...+.+.+|...+.... ..| +..+|..+...+...|++++|...+++++++.|+
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 236 ENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQ 310 (311)
T ss_dssp --CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred chHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhc
Confidence 11 122233334445555666666666653 233 4557889999999999999999999999998774
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.22 E-value=8e-10 Score=111.18 Aligned_cols=211 Identities=9% Similarity=-0.004 Sum_probs=162.2
Q ss_pred hHHHHHHHHHHhCCccchhHHhHHHhhHH-------hcCCH-------HHHHHHHHhcCC----CChhhHHHHHHHHHHc
Q 036237 334 KGRWMHSYIVKNGFVVDGVLGTLLIQMYS-------KCGSI-------ESALTVFRAISK----KKVGHWTAMIVGLGMH 395 (689)
Q Consensus 334 ~a~~i~~~~~~~g~~~~~~~~~~li~~~~-------~~g~~-------~~A~~~~~~~~~----~~~~~~~~li~~~~~~ 395 (689)
+|..+++.+++.. +.++.+|..++..+. +.|++ ++|..+|++... .+...|..++..+.+.
T Consensus 34 ~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~ 112 (308)
T 2ond_A 34 RVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESR 112 (308)
T ss_dssp HHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhc
Confidence 4444455544432 334555555555554 35775 899999998765 2456899999999999
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHH-hcCCHHHH
Q 036237 396 GMATQALDLFNKMCRMGMKPTAI--TFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILC-RTGYLEEA 472 (689)
Q Consensus 396 g~~~~A~~l~~~m~~~g~~p~~~--t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~-~~g~~~~A 472 (689)
|++++|.++|++..+ +.|+.. .|..+...+.+.|++++|+.+|++..+. .+++...|...+.... ..|++++|
T Consensus 113 ~~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~p~~~~~~~~~a~~~~~~~~~~~~A 188 (308)
T 2ond_A 113 MKYEKVHSIYNRLLA--IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED--ARTRHHVYVTAALMEYYCSKDKSVA 188 (308)
T ss_dssp TCHHHHHHHHHHHHT--SSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTS--TTCCTHHHHHHHHHHHHTSCCHHHH
T ss_pred CCHHHHHHHHHHHHh--ccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHHcCCHHHH
Confidence 999999999999998 566543 7888999999999999999999999842 2234555554444432 37999999
Q ss_pred HHHHHhC-CCC-CCHHHHHHHHHHHHhcCChHHHHHHHHHHhhc---CCC-CchhHHHHHHHHHhcCCcchHHHHHHHHH
Q 036237 473 KSTIESM-PMR-PNFVIWMSLLSGARNHGNKDIGEYAANNLIKV---APD-TIGCYVVLSNIYAAAGQWDKVSEVREMMK 546 (689)
Q Consensus 473 ~~~~~~~-~~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~---~p~-~~~~~~~L~~~~~~~g~~~~A~~~~~~m~ 546 (689)
..+|++. ... .+...|..++..+...|+.+.|..+|+++++. .|+ ....+..++..+.+.|++++|..+++++.
T Consensus 189 ~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~ 268 (308)
T 2ond_A 189 FKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRF 268 (308)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 9999986 222 36789999999999999999999999999995 553 56688889999999999999999999987
Q ss_pred hCC
Q 036237 547 KRG 549 (689)
Q Consensus 547 ~~~ 549 (689)
+..
T Consensus 269 ~~~ 271 (308)
T 2ond_A 269 TAF 271 (308)
T ss_dssp HHT
T ss_pred HHc
Confidence 643
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.22 E-value=6.3e-09 Score=107.64 Aligned_cols=259 Identities=12% Similarity=-0.070 Sum_probs=167.9
Q ss_pred HHHHHcCChHHHHHHHHHhccCCCCcChh----hHHHHHHHHHcccchhhHHHHHHHHHHhCCcc-----chhHHhHHHh
Q 036237 289 AGYELNGRFMEALELLETMLIGDVLPNDA----TLVSALSAVAGLAVLNKGRWMHSYIVKNGFVV-----DGVLGTLLIQ 359 (689)
Q Consensus 289 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~----t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~-----~~~~~~~li~ 359 (689)
..+...|++++|...+++.+......+.. .+..+...+...|+++.|...+....+..... ...+...+..
T Consensus 22 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~ 101 (373)
T 1hz4_A 22 QVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSE 101 (373)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 34455666666666666655432111111 22333344555666666666666554421111 1223455677
Q ss_pred hHHhcCCHHHHHHHHHhcCC-------C----ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC--C--CHHHHHHHH
Q 036237 360 MYSKCGSIESALTVFRAISK-------K----KVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMK--P--TAITFIGVL 424 (689)
Q Consensus 360 ~~~~~g~~~~A~~~~~~~~~-------~----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~--p--~~~t~~~ll 424 (689)
.|...|++++|.+.+++... + ....+..+...|...|++++|...+++....... | ...++..+.
T Consensus 102 ~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la 181 (373)
T 1hz4_A 102 ILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLI 181 (373)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHH
Confidence 77888888888888776542 1 1235666778888999999999999987763221 1 124567777
Q ss_pred HHHhccCcHHHHHHHHHHhHHhcCCCCChhHHH-----HHHHHHHhcCCHHHHHHHHHhCC-CCCC-----HHHHHHHHH
Q 036237 425 NACSHAGLVNDGRRYFNMMINDYGIEPTIEHYG-----CLVDILCRTGYLEEAKSTIESMP-MRPN-----FVIWMSLLS 493 (689)
Q Consensus 425 ~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~-----~li~~~~~~g~~~~A~~~~~~~~-~~p~-----~~~~~~ll~ 493 (689)
..+...|++++|...++.......-......+. ..+..+...|++++|...+++.. ..|. ...+..+..
T Consensus 182 ~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~ 261 (373)
T 1hz4_A 182 QCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIAR 261 (373)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHH
Confidence 888889999999999988864321111111121 23455779999999999998873 2221 335677788
Q ss_pred HHHhcCChHHHHHHHHHHhhcCCC------CchhHHHHHHHHHhcCCcchHHHHHHHHHh
Q 036237 494 GARNHGNKDIGEYAANNLIKVAPD------TIGCYVVLSNIYAAAGQWDKVSEVREMMKK 547 (689)
Q Consensus 494 ~~~~~g~~~~a~~~~~~~~~~~p~------~~~~~~~L~~~~~~~g~~~~A~~~~~~m~~ 547 (689)
.+...|++++|...++++++..+. ....+..++.+|...|+.++|...+++...
T Consensus 262 ~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 262 AQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 321 (373)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 889999999999999998875332 123677889999999999999999988764
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.20 E-value=4.1e-10 Score=120.57 Aligned_cols=178 Identities=11% Similarity=-0.001 Sum_probs=157.3
Q ss_pred CHHHHHHHHHhcCC---CChhhHHHHHHHHHHcCCH-HHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCcHHHHHHHH
Q 036237 366 SIESALTVFRAISK---KKVGHWTAMIVGLGMHGMA-TQALDLFNKMCRMGMKPT-AITFIGVLNACSHAGLVNDGRRYF 440 (689)
Q Consensus 366 ~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~-~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~ 440 (689)
.++++.+.++.... .+...|..+...|...|++ ++|++.|++..+. .|+ ...+..+..++...|++++|...|
T Consensus 83 ~~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~g~~~~A~~~~ 160 (474)
T 4abn_A 83 EMEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKL--EPELVEAWNQLGEVYWKKGDVTSAHTCF 160 (474)
T ss_dssp HHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 35667777766544 3677899999999999999 9999999999884 555 668999999999999999999999
Q ss_pred HHhHHhcCCCCChhHHHHHHHHHHhc---------CCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc--------CCh
Q 036237 441 NMMINDYGIEPTIEHYGCLVDILCRT---------GYLEEAKSTIESM-PMRP-NFVIWMSLLSGARNH--------GNK 501 (689)
Q Consensus 441 ~~~~~~~~~~p~~~~~~~li~~~~~~---------g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~--------g~~ 501 (689)
+... .+.|+...+..+...|... |++++|.+.+++. ...| +...|..+..++... |++
T Consensus 161 ~~al---~~~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~ 237 (474)
T 4abn_A 161 SGAL---THCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKIS 237 (474)
T ss_dssp HHHH---TTCCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHH
T ss_pred HHHH---hhCCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchH
Confidence 9998 4568888999999999999 9999999999986 3334 678999999999998 999
Q ss_pred HHHHHHHHHHhhcCC---CCchhHHHHHHHHHhcCCcchHHHHHHHHHhC
Q 036237 502 DIGEYAANNLIKVAP---DTIGCYVVLSNIYAAAGQWDKVSEVREMMKKR 548 (689)
Q Consensus 502 ~~a~~~~~~~~~~~p---~~~~~~~~L~~~~~~~g~~~~A~~~~~~m~~~ 548 (689)
++|+..++++++++| +++..+..++.+|...|++++|.+.+++..+.
T Consensus 238 ~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l 287 (474)
T 4abn_A 238 QQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAAL 287 (474)
T ss_dssp HHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 999999999999999 99999999999999999999999999998763
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.19 E-value=9.7e-10 Score=105.11 Aligned_cols=203 Identities=10% Similarity=0.004 Sum_probs=142.4
Q ss_pred ChhhHHHHHHHHHcccchhhHHHHHHHHHHhCCccchhHHhHHHhhHHhcCCHHHHHHHHHhcCC---CChhhHHHHHHH
Q 036237 315 NDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISK---KKVGHWTAMIVG 391 (689)
Q Consensus 315 ~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~ 391 (689)
|...+......+...|++++|...+..+++...+++...+..+...|.+.|++++|.+.|++... .+...|..+...
T Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 85 (228)
T 4i17_A 6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSAA 85 (228)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHHH
Confidence 45666777777888888888888888888877546666666688888888888888888887654 245577788888
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCC-H-------HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC---hhHHHHHH
Q 036237 392 LGMHGMATQALDLFNKMCRMGMKPT-A-------ITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPT---IEHYGCLV 460 (689)
Q Consensus 392 ~~~~g~~~~A~~l~~~m~~~g~~p~-~-------~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~---~~~~~~li 460 (689)
|...|++++|++.|++..+. .|+ . ..|..+...+...|++++|+..|+.+. .+.|+ ...+..+.
T Consensus 86 ~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al---~~~p~~~~~~~~~~l~ 160 (228)
T 4i17_A 86 YRDMKNNQEYIATLTEGIKA--VPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHAT---DVTSKKWKTDALYSLG 160 (228)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT---TSSCHHHHHHHHHHHH
T ss_pred HHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHH---hcCCCcccHHHHHHHH
Confidence 88888888888888888773 444 2 346666677777888888888888877 34555 46677777
Q ss_pred HHHHhcCCH--HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchhHHHHHHHH
Q 036237 461 DILCRTGYL--EEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIY 529 (689)
Q Consensus 461 ~~~~~~g~~--~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~~ 529 (689)
..|...|+. ++|..+. ..+...+..+. ....+.+++|+..++++++++|+++.+...|..+.
T Consensus 161 ~~~~~~~~~~~~~a~~~~-----~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i~ 224 (228)
T 4i17_A 161 VLFYNNGADVLRKATPLA-----SSNKEKYASEK--AKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQVK 224 (228)
T ss_dssp HHHHHHHHHHHHHHGGGT-----TTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcc-----cCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHH
Confidence 777665543 2222211 12333443333 23445679999999999999999987777776554
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.18 E-value=5.5e-10 Score=106.83 Aligned_cols=150 Identities=11% Similarity=0.061 Sum_probs=69.5
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHH
Q 036237 383 GHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPT-IEHYGCLVD 461 (689)
Q Consensus 383 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~ 461 (689)
..|..+...+...|++++|++.|++..+....++...+..+..++...|++++|+..|+...+ ..|+ ...+..+..
T Consensus 8 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~l~~ 84 (228)
T 4i17_A 8 NQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIK---KNYNLANAYIGKSA 84 (228)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---TTCSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHH---hCcchHHHHHHHHH
Confidence 344444444444555555555555444432213344444444444455555555555554442 2232 344444455
Q ss_pred HHHhcCCHHHHHHHHHhC-CCCC-CH-------HHHHHHHHHHHhcCChHHHHHHHHHHhhcCCC--CchhHHHHHHHHH
Q 036237 462 ILCRTGYLEEAKSTIESM-PMRP-NF-------VIWMSLLSGARNHGNKDIGEYAANNLIKVAPD--TIGCYVVLSNIYA 530 (689)
Q Consensus 462 ~~~~~g~~~~A~~~~~~~-~~~p-~~-------~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~--~~~~~~~L~~~~~ 530 (689)
.|...|++++|...+++. ...| +. ..|..+...+...|++++|+..++++++++|+ ++.++..++.+|.
T Consensus 85 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~ 164 (228)
T 4i17_A 85 AYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGVLFY 164 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHH
Confidence 555555555555554443 1112 22 23444444455555555555555555555555 4455555555554
Q ss_pred hcCCc
Q 036237 531 AAGQW 535 (689)
Q Consensus 531 ~~g~~ 535 (689)
..|+.
T Consensus 165 ~~~~~ 169 (228)
T 4i17_A 165 NNGAD 169 (228)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44433
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.17 E-value=1.5e-09 Score=99.46 Aligned_cols=168 Identities=8% Similarity=-0.081 Sum_probs=142.8
Q ss_pred hhHHhHHHhhHHhcCCHHHHHHHHHhcCC---CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 036237 351 GVLGTLLIQMYSKCGSIESALTVFRAISK---KKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNAC 427 (689)
Q Consensus 351 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~ 427 (689)
...+..+...|...|++++|.+.|+++.. .+...|..+...|...|++++|.+.++++.+.. +.+...+..+...+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~ 86 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 34556678888999999999999999876 356788999999999999999999999998752 33566788888999
Q ss_pred hccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCChHHHH
Q 036237 428 SHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESM-P-MRPNFVIWMSLLSGARNHGNKDIGE 505 (689)
Q Consensus 428 ~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~ll~~~~~~g~~~~a~ 505 (689)
...|++++|..+++.+... .+.+...+..+...|...|++++|.+.++++ . .+.+...|..+...+...|+++.|.
T Consensus 87 ~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 164 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEA--NPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEAL 164 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHhcCHHHHHHHHHHHHhc--CcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHH
Confidence 9999999999999999853 3446788899999999999999999999886 2 2346788999999999999999999
Q ss_pred HHHHHHhhcCCCCchh
Q 036237 506 YAANNLIKVAPDTIGC 521 (689)
Q Consensus 506 ~~~~~~~~~~p~~~~~ 521 (689)
..++++++..|+++..
T Consensus 165 ~~~~~~~~~~~~~~~~ 180 (186)
T 3as5_A 165 PHFKKANELDEGASVE 180 (186)
T ss_dssp HHHHHHHHHHHCCCGG
T ss_pred HHHHHHHHcCCCchhh
Confidence 9999999998877543
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.17 E-value=5.5e-08 Score=107.21 Aligned_cols=430 Identities=10% Similarity=0.042 Sum_probs=278.5
Q ss_pred hCCCchHHHHHHHHhHhCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCC---hHH
Q 036237 99 FNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGE---IDL 175 (689)
Q Consensus 99 ~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~---~~~ 175 (689)
+.....+.+..|++.+..+ +-|..+|..++..+.+.+.++.++.+++.++.. ++.....|...+..-.+.|+ ++.
T Consensus 44 ~~~~~~d~i~~lE~~l~~n-p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~~~~~~~~~ 121 (679)
T 4e6h_A 44 RVRDESDVIGKLNDMIEEQ-PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR-FPLMANIWCMRLSLEFDKMEELDAAV 121 (679)
T ss_dssp --CCCSCHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC--CCCHHH
T ss_pred cccCCHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhhCCcchHHH
Confidence 3345666676777777665 348889999999999999999999999999987 47778889999999889998 999
Q ss_pred HHHHHhhCCC-----CCeehHHHHHHHHHhCCCh--------HHHHHHHhhCC------CC-CcchHHHHHHHHHh----
Q 036237 176 GRRVFDAMDD-----KDLVSWNCLIDGYVKKGEV--------EVAMKLFDEMP------DR-DLFSWTCLVDGFSK---- 231 (689)
Q Consensus 176 A~~~~~~m~~-----~~~~~~~~li~~~~~~g~~--------~~A~~~~~~m~------~~-d~~~~~~li~~~~~---- 231 (689)
+..+|++... +++..|...+.-..+.+.. +...++|+... .+ +...|...+.....
T Consensus 122 v~~lfeRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~ 201 (679)
T 4e6h_A 122 IEPVLARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPV 201 (679)
T ss_dssp HHHHHHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCC
T ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhcccc
Confidence 9999998763 6777888887766555543 23346666532 22 23456665554332
Q ss_pred -----CCChHHHHHHHhhcCcCCcchHHHHHHHHHhcC---CHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHH
Q 036237 232 -----CGKVEIAREIFYRMPNRNLVSWNAMINGYMKAG---DVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALEL 303 (689)
Q Consensus 232 -----~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 303 (689)
.++++.+.++|.+++.....-+..+-..|..-. ....+.+++.+ ...+++.|...
T Consensus 202 ~~~eeq~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e-----------------~~~~y~~Ar~~ 264 (679)
T 4e6h_A 202 NKFEEQQRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGE-----------------LSAQYMNARSL 264 (679)
T ss_dssp SHHHHHHHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHH-----------------HHHHHHHHHHH
T ss_pred CcHHHHhHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCcchHHHHHHH-----------------hhHHHHHHHHH
Confidence 234566777777776521111222222221100 00011111111 01123334444
Q ss_pred HHHhcc--CCC----C-----------c-Ch-------hhHHHHHHHHHccc-------chhhHHHHHHHHHHhCCccch
Q 036237 304 LETMLI--GDV----L-----------P-ND-------ATLVSALSAVAGLA-------VLNKGRWMHSYIVKNGFVVDG 351 (689)
Q Consensus 304 ~~~m~~--~g~----~-----------p-~~-------~t~~~ll~a~~~~~-------~~~~a~~i~~~~~~~g~~~~~ 351 (689)
+.++.. .++ + | .. ..|...+.---..+ ..+....+|+.++..- +...
T Consensus 265 ~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~-p~~~ 343 (679)
T 4e6h_A 265 YQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHV-CFAP 343 (679)
T ss_dssp HHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCH
T ss_pred HHHHHHHHHhHhhccccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHc-CCCH
Confidence 433210 011 0 1 00 11222221111111 1234556787777753 4577
Q ss_pred hHHhHHHhhHHhcCCHHHHH-HHHHhcCC---CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCC---------CCC--
Q 036237 352 VLGTLLIQMYSKCGSIESAL-TVFRAISK---KKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGM---------KPT-- 416 (689)
Q Consensus 352 ~~~~~li~~~~~~g~~~~A~-~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~---------~p~-- 416 (689)
.+|-..+..+...|+.++|. ++|++... .+...|-..+...-+.|++++|.++|+++..... .|+
T Consensus 344 ~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~ 423 (679)
T 4e6h_A 344 EIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNE 423 (679)
T ss_dssp HHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCH
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcch
Confidence 88888888888899999996 99988764 3556788888899999999999999999886310 142
Q ss_pred ----------HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcC-CHHHHHHHHHhC-C-CCC
Q 036237 417 ----------AITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTG-YLEEAKSTIESM-P-MRP 483 (689)
Q Consensus 417 ----------~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g-~~~~A~~~~~~~-~-~~p 483 (689)
...|...+....+.|.++.|+.+|..+.+.. ..+....|...+.+-.+.| +.+.|.++|+.. . ...
T Consensus 424 ~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~-~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~ 502 (679)
T 4e6h_A 424 SAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLK-KLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFAT 502 (679)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTG-GGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTT
T ss_pred hhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc-CCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCC
Confidence 2357777777888899999999999998531 1223445554455545555 489999999876 2 234
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCC---CchhHHHHHHHHHhcCCcchHHHHHHHHHhCC
Q 036237 484 NFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPD---TIGCYVVLSNIYAAAGQWDKVSEVREMMKKRG 549 (689)
Q Consensus 484 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~---~~~~~~~L~~~~~~~g~~~~A~~~~~~m~~~~ 549 (689)
+...|...+.-....|+.+.|..+|+++++..|+ ....+...+..-.+.|+.+.+..+.+++.+.-
T Consensus 503 ~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~ 571 (679)
T 4e6h_A 503 DGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKF 571 (679)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHS
T ss_pred chHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 6677888888888899999999999999998773 33456677777778999999999999998754
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.12 E-value=1.5e-09 Score=112.69 Aligned_cols=193 Identities=9% Similarity=0.016 Sum_probs=107.2
Q ss_pred HHhHHHhhHHhcCCHHHHHHHHHhcCC-----CC-----hhhHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCCC-H
Q 036237 353 LGTLLIQMYSKCGSIESALTVFRAISK-----KK-----VGHWTAMIVGLGMHGMATQALDLFNKMCRM----GMKPT-A 417 (689)
Q Consensus 353 ~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~-----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p~-~ 417 (689)
++..+...|...|+++.|...+++... ++ ..+++.+...|...|++++|++.|++..+. +-.+. .
T Consensus 143 ~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 222 (378)
T 3q15_A 143 FHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIA 222 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 344455555555555555555544331 11 235566666666677777776666665542 11111 2
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHhHHhc---CCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC----CC--CCC-HHH
Q 036237 418 ITFIGVLNACSHAGLVNDGRRYFNMMINDY---GIEPTIEHYGCLVDILCRTGYLEEAKSTIESM----PM--RPN-FVI 487 (689)
Q Consensus 418 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~---~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~----~~--~p~-~~~ 487 (689)
.++..+...+...|++++|...|++...-. +.+....++..+...|.+.|++++|...+++. +. .|. ...
T Consensus 223 ~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 302 (378)
T 3q15_A 223 ISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKEL 302 (378)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 245566666667777777777776665311 11112455666677777777777777776654 11 122 223
Q ss_pred HHHHHHHHHhcCC---hHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCcchHHHHHHHHH
Q 036237 488 WMSLLSGARNHGN---KDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMK 546 (689)
Q Consensus 488 ~~~ll~~~~~~g~---~~~a~~~~~~~~~~~p~~~~~~~~L~~~~~~~g~~~~A~~~~~~m~ 546 (689)
+..+...+...++ ++.|+..+++. ...|+....+..++..|...|++++|...+++..
T Consensus 303 ~~~l~~ly~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al 363 (378)
T 3q15_A 303 FLFLQAVYKETVDERKIHDLLSYFEKK-NLHAYIEACARSAAAVFESSCHFEQAAAFYRKVL 363 (378)
T ss_dssp HHHHHHHHSSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHhC-CChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 4444444555566 55555555542 1223334566677888888888888887777664
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.12 E-value=9.2e-09 Score=106.72 Aligned_cols=228 Identities=9% Similarity=-0.020 Sum_probs=165.3
Q ss_pred HHHHHHHcCChHHHHHHHHHhccCCC-CcC----hhhHHHHHHHHHcccchhhHHHHHHHHHHhCC-----c-cchhHHh
Q 036237 287 MIAGYELNGRFMEALELLETMLIGDV-LPN----DATLVSALSAVAGLAVLNKGRWMHSYIVKNGF-----V-VDGVLGT 355 (689)
Q Consensus 287 li~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~-----~-~~~~~~~ 355 (689)
....+...|++++|+..|++....-. .++ ..++..+...+...|+++.|...+..+.+... . ....+++
T Consensus 107 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 186 (378)
T 3q15_A 107 RGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLF 186 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHH
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHH
Confidence 34455677777777777777764311 122 23455566667777777777777777665311 1 1245677
Q ss_pred HHHhhHHhcCCHHHHHHHHHhcCC-----CC----hhhHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCCCHHHHHH
Q 036237 356 LLIQMYSKCGSIESALTVFRAISK-----KK----VGHWTAMIVGLGMHGMATQALDLFNKMCRM----GMKPTAITFIG 422 (689)
Q Consensus 356 ~li~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p~~~t~~~ 422 (689)
.+...|...|++++|.+.|++... ++ ..+++.+...|...|++++|++.|++..+. +.+....++..
T Consensus 187 ~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 266 (378)
T 3q15_A 187 VIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFG 266 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHH
Confidence 788889999999999888887653 12 346888899999999999999999998761 21222557888
Q ss_pred HHHHHhccCcHHHHHHHHHHhHHhcCCCCC---hhHHHHHHHHHHhcCC---HHHHHHHHHhCCCCCCH-HHHHHHHHHH
Q 036237 423 VLNACSHAGLVNDGRRYFNMMINDYGIEPT---IEHYGCLVDILCRTGY---LEEAKSTIESMPMRPNF-VIWMSLLSGA 495 (689)
Q Consensus 423 ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~---~~~~~~li~~~~~~g~---~~~A~~~~~~~~~~p~~-~~~~~ll~~~ 495 (689)
+...+.+.|++++|..++++......-.++ ...+..+...|...|+ +++|...+++....|+. ..+..+...+
T Consensus 267 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~y 346 (378)
T 3q15_A 267 LSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKNLHAYIEACARSAAAVF 346 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCCChhHHHHHHHHHHHHH
Confidence 889999999999999999998854322222 4556777788888898 99999999997644443 3667888889
Q ss_pred HhcCChHHHHHHHHHHhhc
Q 036237 496 RNHGNKDIGEYAANNLIKV 514 (689)
Q Consensus 496 ~~~g~~~~a~~~~~~~~~~ 514 (689)
...|+++.|...++++++.
T Consensus 347 ~~~g~~~~A~~~~~~al~~ 365 (378)
T 3q15_A 347 ESSCHFEQAAAFYRKVLKA 365 (378)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHH
Confidence 9999999999999998764
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.09 E-value=2.3e-08 Score=103.45 Aligned_cols=232 Identities=10% Similarity=0.021 Sum_probs=139.5
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHhccCCCC-cCh----hhHHHHHHHHHcccchhhHHHHHHHHHHh----CCc--c-ch
Q 036237 284 WNSMIAGYELNGRFMEALELLETMLIGDVL-PND----ATLVSALSAVAGLAVLNKGRWMHSYIVKN----GFV--V-DG 351 (689)
Q Consensus 284 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~~----~t~~~ll~a~~~~~~~~~a~~i~~~~~~~----g~~--~-~~ 351 (689)
++.+...+...|++++|...+++....... ++. .++..+...+...|++++|...+....+. +.. | ..
T Consensus 56 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~ 135 (373)
T 1hz4_A 56 TSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHE 135 (373)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHH
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHH
Confidence 344444555555555555555554431100 011 11233344455556666666555555432 111 1 23
Q ss_pred hHHhHHHhhHHhcCCHHHHHHHHHhcCC--C------ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH-HHHH-
Q 036237 352 VLGTLLIQMYSKCGSIESALTVFRAISK--K------KVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTA-ITFI- 421 (689)
Q Consensus 352 ~~~~~li~~~~~~g~~~~A~~~~~~~~~--~------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~- 421 (689)
..+..+...|...|++++|...+++... + ...+|..+...+...|++++|...+++.....-.++. ..+.
T Consensus 136 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~ 215 (373)
T 1hz4_A 136 FLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWIS 215 (373)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHH
Confidence 4455567777778888888877776532 1 1245777788888889999999998887653212221 1111
Q ss_pred ----HHHHHHhccCcHHHHHHHHHHhHHhcCCCCC---hhHHHHHHHHHHhcCCHHHHHHHHHhC-------CCCCCH-H
Q 036237 422 ----GVLNACSHAGLVNDGRRYFNMMINDYGIEPT---IEHYGCLVDILCRTGYLEEAKSTIESM-------PMRPNF-V 486 (689)
Q Consensus 422 ----~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~~-------~~~p~~-~ 486 (689)
..+..+...|++++|...++..... ...+. ...+..+...+...|++++|...+++. +..++. .
T Consensus 216 ~~~~~~~~~~~~~g~~~~A~~~~~~a~~~-~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~ 294 (373)
T 1hz4_A 216 NANKVRVIYWQMTGDKAAAANWLRHTAKP-EFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNR 294 (373)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHSCCC-CCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHhCCCC-CCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHH
Confidence 2234466889999999998887632 11111 224567788888999999998888775 111122 2
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHhhcCC
Q 036237 487 IWMSLLSGARNHGNKDIGEYAANNLIKVAP 516 (689)
Q Consensus 487 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p 516 (689)
.+..+..++...|+.++|...+++++++.+
T Consensus 295 ~~~~la~~~~~~g~~~~A~~~l~~al~~~~ 324 (373)
T 1hz4_A 295 NLLLLNQLYWQAGRKSDAQRVLLDALKLAN 324 (373)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHhc
Confidence 566677778889999999999999887544
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.07 E-value=1.1e-09 Score=108.02 Aligned_cols=198 Identities=13% Similarity=0.189 Sum_probs=126.2
Q ss_pred chhHHhHHHhhHHhcCCHHHHHHHHHhcCC-----------CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHC------C
Q 036237 350 DGVLGTLLIQMYSKCGSIESALTVFRAISK-----------KKVGHWTAMIVGLGMHGMATQALDLFNKMCRM------G 412 (689)
Q Consensus 350 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----------~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~------g 412 (689)
...++..+...|...|++++|...|+++.. ....+|..+...|...|++++|++.|++.... .
T Consensus 42 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 121 (283)
T 3edt_B 42 VATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGK 121 (283)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCC
Confidence 455666677777777777777777766542 12346777788888888888888888877653 1
Q ss_pred CCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhHHhc-----CCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhCC-----
Q 036237 413 MKPT-AITFIGVLNACSHAGLVNDGRRYFNMMINDY-----GIEPT-IEHYGCLVDILCRTGYLEEAKSTIESMP----- 480 (689)
Q Consensus 413 ~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~-----~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~----- 480 (689)
-.|+ ..++..+...+...|++++|..+++++.... ...|+ ...+..+...|.+.|++++|...++++-
T Consensus 122 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~ 201 (283)
T 3edt_B 122 FHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHE 201 (283)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 1232 3467777778888888888888888776421 11222 4667788888888888888888887651
Q ss_pred -----CCC-CHHHHHHHHHHHHhcCC------hHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCcchHHHHHHHHHh
Q 036237 481 -----MRP-NFVIWMSLLSGARNHGN------KDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKK 547 (689)
Q Consensus 481 -----~~p-~~~~~~~ll~~~~~~g~------~~~a~~~~~~~~~~~p~~~~~~~~L~~~~~~~g~~~~A~~~~~~m~~ 547 (689)
..+ ....|..+.......+. +..+...++......|..+.++..|+.+|...|++++|..++++..+
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 202 KEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp HHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred hcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 122 22234444333333332 23333333333334455667888999999999999999999988765
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.06 E-value=7.3e-10 Score=123.61 Aligned_cols=163 Identities=17% Similarity=0.188 Sum_probs=139.4
Q ss_pred cchhHHhHHHhhHHhcCCHHHHHHHHHhcCC---CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHH
Q 036237 349 VDGVLGTLLIQMYSKCGSIESALTVFRAISK---KKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPT-AITFIGVL 424 (689)
Q Consensus 349 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll 424 (689)
.+...++.|...|.+.|++++|++.|++..+ .+..+|+.+...|.+.|++++|++.|++..+ +.|+ ...|..+.
T Consensus 7 ~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~--l~P~~~~a~~nLg 84 (723)
T 4gyw_A 7 THADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR--ISPTFADAYSNMG 84 (723)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHH
Confidence 3467788888999999999999999988764 4577899999999999999999999999988 4666 55888999
Q ss_pred HHHhccCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCh
Q 036237 425 NACSHAGLVNDGRRYFNMMINDYGIEPT-IEHYGCLVDILCRTGYLEEAKSTIESM-PMRP-NFVIWMSLLSGARNHGNK 501 (689)
Q Consensus 425 ~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~ 501 (689)
.++...|++++|++.|++..+ +.|+ ...|+.+..+|.+.|++++|++.|++. ...| +...|..+...+...|++
T Consensus 85 ~~l~~~g~~~~A~~~~~kAl~---l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~ 161 (723)
T 4gyw_A 85 NTLKEMQDVQGALQCYTRAIQ---INPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDW 161 (723)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCC
T ss_pred HHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccH
Confidence 999999999999999999884 4565 788999999999999999999999886 4455 567899999999999999
Q ss_pred HHHHHHHHHHhhcCC
Q 036237 502 DIGEYAANNLIKVAP 516 (689)
Q Consensus 502 ~~a~~~~~~~~~~~p 516 (689)
++|++.+++++++.|
T Consensus 162 ~~A~~~~~kal~l~~ 176 (723)
T 4gyw_A 162 TDYDERMKKLVSIVA 176 (723)
T ss_dssp TTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCh
Confidence 999999999887554
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.02 E-value=6.9e-09 Score=103.40 Aligned_cols=166 Identities=11% Similarity=0.019 Sum_probs=101.7
Q ss_pred hHHhHHHhhHHhcCCHHHHHHHHHhcCC-----CC----hhhHHHHHHHHHHc-CCHHHHHHHHHHHHHCCCCCC-----
Q 036237 352 VLGTLLIQMYSKCGSIESALTVFRAISK-----KK----VGHWTAMIVGLGMH-GMATQALDLFNKMCRMGMKPT----- 416 (689)
Q Consensus 352 ~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~-g~~~~A~~l~~~m~~~g~~p~----- 416 (689)
.+++.+..+|.+.|++++|+..|++... .+ ..+|+.+...|... |++++|+..|++..+. .|+
T Consensus 78 ~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~--~~~~~~~~ 155 (292)
T 1qqe_A 78 NTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEW--YAQDQSVA 155 (292)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH--HHHTTCHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHH--HHhCCChH
Confidence 3455555666666666666666555432 11 23567777777775 8888888888877652 221
Q ss_pred --HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCCh-----hHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHH--
Q 036237 417 --AITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTI-----EHYGCLVDILCRTGYLEEAKSTIESM-PMRPNFV-- 486 (689)
Q Consensus 417 --~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~-----~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~-- 486 (689)
..++..+...+...|++++|+..|+.......-.+.. ..|..+..+|...|++++|...+++. .+.|+..
T Consensus 156 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~ 235 (292)
T 1qqe_A 156 LSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADS 235 (292)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC-------
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCc
Confidence 2356777777888888888888888877421111111 14666777788888888888888775 3334321
Q ss_pred ----HHHHHHHHHH--hcCChHHHHHHHHHHhhcCCCCc
Q 036237 487 ----IWMSLLSGAR--NHGNKDIGEYAANNLIKVAPDTI 519 (689)
Q Consensus 487 ----~~~~ll~~~~--~~g~~~~a~~~~~~~~~~~p~~~ 519 (689)
.+..++.++. ..++++.|+..++++.+++|...
T Consensus 236 ~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~~~~ 274 (292)
T 1qqe_A 236 RESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWKI 274 (292)
T ss_dssp --HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHHHHH
Confidence 2344555554 34567778887777777777543
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.01 E-value=2.3e-08 Score=97.66 Aligned_cols=204 Identities=11% Similarity=0.040 Sum_probs=132.9
Q ss_pred chhHHhHHHhhHHhcCCHHHHHHHHHhcCC--C-C---hhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-CCC-HHHHH
Q 036237 350 DGVLGTLLIQMYSKCGSIESALTVFRAISK--K-K---VGHWTAMIVGLGMHGMATQALDLFNKMCRMGM-KPT-AITFI 421 (689)
Q Consensus 350 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~-~~t~~ 421 (689)
+...+..+...+.+.|++++|...|+++.. | + ...|..+..+|.+.|++++|+..|++..+... .|. ...+.
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 93 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEY 93 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHH
Confidence 345555566677777777777777777654 2 2 34566677777777777777777777776321 112 23455
Q ss_pred HHHHHHhc--------cCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHH
Q 036237 422 GVLNACSH--------AGLVNDGRRYFNMMINDYGIEPT-IEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLL 492 (689)
Q Consensus 422 ~ll~a~~~--------~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll 492 (689)
.+..++.. .|++++|...|+.+.+. .|+ ......+..+....+.+ ...+..+.
T Consensus 94 ~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~---~p~~~~~~~a~~~~~~~~~~~---------------~~~~~~la 155 (261)
T 3qky_A 94 ERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR---YPNHELVDDATQKIRELRAKL---------------ARKQYEAA 155 (261)
T ss_dssp HHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH---CTTCTTHHHHHHHHHHHHHHH---------------HHHHHHHH
T ss_pred HHHHHHHHhcccccccchhHHHHHHHHHHHHHH---CcCchhHHHHHHHHHHHHHHH---------------HHHHHHHH
Confidence 55556666 77777777777777643 233 22222221111111111 11246677
Q ss_pred HHHHhcCChHHHHHHHHHHhhcCCCC---chhHHHHHHHHHhc----------CCcchHHHHHHHHHhCCCccCCcccEE
Q 036237 493 SGARNHGNKDIGEYAANNLIKVAPDT---IGCYVVLSNIYAAA----------GQWDKVSEVREMMKKRGFRKDPGSSSI 559 (689)
Q Consensus 493 ~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~L~~~~~~~----------g~~~~A~~~~~~m~~~~~~~~~~~~~~ 559 (689)
..+...|+++.|+..++++++..|++ +..+..++.+|... |++++|...++++.+.. |
T Consensus 156 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~----p----- 226 (261)
T 3qky_A 156 RLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIF----P----- 226 (261)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHC----T-----
T ss_pred HHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHC----C-----
Confidence 88999999999999999999999984 45788999999877 89999999999987633 1
Q ss_pred EECCEEEEEeeCCCCCcChHHHHHHHHHHHHHHHH
Q 036237 560 EHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKA 594 (689)
Q Consensus 560 ~~~~~~~~f~~~~~~~~~~~~~~~~l~~l~~~m~~ 594 (689)
.+|...++...+.++...+.+
T Consensus 227 --------------~~~~~~~a~~~l~~~~~~~~~ 247 (261)
T 3qky_A 227 --------------DSPLLRTAEELYTRARQRLTE 247 (261)
T ss_dssp --------------TCTHHHHHHHHHHHHHHHHHH
T ss_pred --------------CChHHHHHHHHHHHHHHHHHH
Confidence 234556777777777776654
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=98.96 E-value=5.9e-08 Score=95.01 Aligned_cols=174 Identities=10% Similarity=-0.002 Sum_probs=112.7
Q ss_pred HHHHHHhcCC---CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhHH
Q 036237 370 ALTVFRAISK---KKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPT-AITFIGVLNACSHAGLVNDGRRYFNMMIN 445 (689)
Q Consensus 370 A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 445 (689)
|+..|++... ++..++..+..++...|++++|++++.+.+..|-.++ ...+..++..+.+.|+.+.|.+.++.|.+
T Consensus 85 a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~ 164 (310)
T 3mv2_B 85 NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN 164 (310)
T ss_dssp CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 5555655442 3444555667777777888888888777665442223 33566666777778888888888877763
Q ss_pred hcCCCC-----ChhHHHHHHHH--HHhcC--CHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhc-
Q 036237 446 DYGIEP-----TIEHYGCLVDI--LCRTG--YLEEAKSTIESMP-MRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKV- 514 (689)
Q Consensus 446 ~~~~~p-----~~~~~~~li~~--~~~~g--~~~~A~~~~~~~~-~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~- 514 (689)
..| +..+...|..+ ....| ++++|..+|+++. ..|+..+-..++.++.+.|++++|+..++.+.+.
T Consensus 165 ---~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~ 241 (310)
T 3mv2_B 165 ---AIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDY 241 (310)
T ss_dssp ---HSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHH
T ss_pred ---cCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 345 23444444443 22233 7888888888763 2355333344444777788888888888877665
Q ss_pred ---------CCCCchhHHHHHHHHHhcCCcchHHHHHHHHHhC
Q 036237 515 ---------APDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKR 548 (689)
Q Consensus 515 ---------~p~~~~~~~~L~~~~~~~g~~~~A~~~~~~m~~~ 548 (689)
+|+++.++..++..+...|+ +|.++++++++.
T Consensus 242 p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~ 282 (310)
T 3mv2_B 242 YSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKL 282 (310)
T ss_dssp HHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHT
T ss_pred ccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHh
Confidence 47788888777777777776 778888888764
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.95 E-value=9.1e-09 Score=102.50 Aligned_cols=200 Identities=8% Similarity=-0.033 Sum_probs=144.9
Q ss_pred chhhHHHHHHHHHHhCCccchhHHhHHHhhHHhcCCHHHHHHHHHhcCC-----CC----hhhHHHHHHHHHHcCCHHHH
Q 036237 331 VLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISK-----KK----VGHWTAMIVGLGMHGMATQA 401 (689)
Q Consensus 331 ~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~~~~A 401 (689)
++++|...+..+ ...|...|++++|.+.|++... .+ ..+|+.+...|...|++++|
T Consensus 32 ~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A 96 (292)
T 1qqe_A 32 KFEEAADLCVQA---------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNA 96 (292)
T ss_dssp HHHHHHHHHHHH---------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred cHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHH
Confidence 477777777665 4457788999999988887653 12 45889999999999999999
Q ss_pred HHHHHHHHHCCC---CCC--HHHHHHHHHHHhcc-CcHHHHHHHHHHhHHhcCCCCC----hhHHHHHHHHHHhcCCHHH
Q 036237 402 LDLFNKMCRMGM---KPT--AITFIGVLNACSHA-GLVNDGRRYFNMMINDYGIEPT----IEHYGCLVDILCRTGYLEE 471 (689)
Q Consensus 402 ~~l~~~m~~~g~---~p~--~~t~~~ll~a~~~~-g~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~ 471 (689)
+..|++..+... .+. ..++..+...+... |++++|+..|++...-..-..+ ..++..+...|.+.|++++
T Consensus 97 ~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~ 176 (292)
T 1qqe_A 97 VDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIE 176 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHH
Confidence 999998876311 111 34788888999996 9999999999998742211111 3568889999999999999
Q ss_pred HHHHHHhCC-CCC---CH-----HHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchh-----HHHHHHHHH--hcCCc
Q 036237 472 AKSTIESMP-MRP---NF-----VIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGC-----YVVLSNIYA--AAGQW 535 (689)
Q Consensus 472 A~~~~~~~~-~~p---~~-----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~-----~~~L~~~~~--~~g~~ 535 (689)
|...+++.. ..| +. ..|..+..++...|+++.|+..++++++++|+.... +..|+..|. ..+++
T Consensus 177 A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~ 256 (292)
T 1qqe_A 177 ASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQL 256 (292)
T ss_dssp HHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTH
T ss_pred HHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHH
Confidence 999999862 222 21 257788888999999999999999999999976543 345666664 45667
Q ss_pred chHHHHHHHH
Q 036237 536 DKVSEVREMM 545 (689)
Q Consensus 536 ~~A~~~~~~m 545 (689)
++|...++.+
T Consensus 257 ~~A~~~~~~~ 266 (292)
T 1qqe_A 257 SEHCKEFDNF 266 (292)
T ss_dssp HHHHHHHTTS
T ss_pred HHHHHHhccC
Confidence 7777766543
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=98.94 E-value=1.3e-09 Score=96.56 Aligned_cols=136 Identities=10% Similarity=0.034 Sum_probs=86.5
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCCHHH
Q 036237 394 MHGMATQALDLFNKMCRMGMKPT-AITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPT-IEHYGCLVDILCRTGYLEE 471 (689)
Q Consensus 394 ~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~ 471 (689)
..|++++|++.+++... ..|+ ...+..+...|...|++++|++.|++..+ +.|+ ...|..+..+|.+.|++++
T Consensus 9 ~~~~~e~ai~~~~~a~~--~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~---~~p~~~~a~~~lg~~~~~~~~~~~ 83 (150)
T 4ga2_A 9 SKADVERYIASVQGSTP--SPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYIN---VQERDPKAHRFLGLLYELEENTDK 83 (150)
T ss_dssp CHHHHHHHHHHHHHHSC--SHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HcChHHHHHHHHHHhcc--cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcCchHH
Confidence 34455555555555433 2222 22344455555555666666666655552 2333 5566666666666666666
Q ss_pred HHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHH-HHHHHhhcCCCCchhHHHHHHHHHhcCC
Q 036237 472 AKSTIESM-PMRP-NFVIWMSLLSGARNHGNKDIGEY-AANNLIKVAPDTIGCYVVLSNIYAAAGQ 534 (689)
Q Consensus 472 A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~-~~~~~~~~~p~~~~~~~~L~~~~~~~g~ 534 (689)
|...|++. ...| +...|..+...+...|+.++|.. .++++++++|+++.+|.....++...|+
T Consensus 84 A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 84 AVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 66666654 2344 56678888888888888876555 4689999999999999988888887775
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=98.94 E-value=3.7e-08 Score=96.90 Aligned_cols=164 Identities=12% Similarity=0.058 Sum_probs=99.4
Q ss_pred hhHHhHHHhhHHhcCCHHHHHHHHHhcCC-------C----ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHC------CC
Q 036237 351 GVLGTLLIQMYSKCGSIESALTVFRAISK-------K----KVGHWTAMIVGLGMHGMATQALDLFNKMCRM------GM 413 (689)
Q Consensus 351 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~-------~----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~------g~ 413 (689)
..++..+...|...|++++|.+.|+++.. + ...+|..+...|...|++++|+..|++..+. +-
T Consensus 85 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 164 (283)
T 3edt_B 85 AATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPD 164 (283)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTT
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC
Confidence 34455556666666666666666655432 1 2346777777888888888888888877663 11
Q ss_pred CCC-HHHHHHHHHHHhccCcHHHHHHHHHHhHHhc------CCCCC-hhHHHHHHHHHHhcC------CHHHHHHHHHhC
Q 036237 414 KPT-AITFIGVLNACSHAGLVNDGRRYFNMMINDY------GIEPT-IEHYGCLVDILCRTG------YLEEAKSTIESM 479 (689)
Q Consensus 414 ~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~------~~~p~-~~~~~~li~~~~~~g------~~~~A~~~~~~~ 479 (689)
.|+ ..++..+...+...|++++|..+++.+.+.. ...+. ...+..+...+...+ .+.++...++..
T Consensus 165 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (283)
T 3edt_B 165 DPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKAC 244 (283)
T ss_dssp CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CC
T ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhc
Confidence 333 3467777788888888888888888776421 12222 333444444443322 345555555555
Q ss_pred C-CCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHhhc
Q 036237 480 P-MRP-NFVIWMSLLSGARNHGNKDIGEYAANNLIKV 514 (689)
Q Consensus 480 ~-~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 514 (689)
. ..| ...++..+...+...|++++|...++++++.
T Consensus 245 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 245 KVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp CCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4 223 3457888999999999999999999998864
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=98.91 E-value=3.7e-08 Score=96.20 Aligned_cols=200 Identities=8% Similarity=-0.026 Sum_probs=141.9
Q ss_pred ChhhHHHHHHHHHcccchhhHHHHHHHHHHhCCccc--hhHHhHHHhhHHhcCCHHHHHHHHHhcCC--C-C---hhhHH
Q 036237 315 NDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVD--GVLGTLLIQMYSKCGSIESALTVFRAISK--K-K---VGHWT 386 (689)
Q Consensus 315 ~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~---~~~~~ 386 (689)
+...+......+...|++++|...+..+++...... ...+..+...|.+.|++++|...|++... | + ...+.
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 93 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEY 93 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHH
Confidence 445666677788899999999999999988753221 56778899999999999999999998865 2 2 34677
Q ss_pred HHHHHHHH--------cCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHH
Q 036237 387 AMIVGLGM--------HGMATQALDLFNKMCRMGMKPTAI-TFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYG 457 (689)
Q Consensus 387 ~li~~~~~--------~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~ 457 (689)
.+..++.. .|++++|+..|++..+. .|+.. ....+ ..+..+... -...+.
T Consensus 94 ~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a~--------------~~~~~~~~~-----~~~~~~ 152 (261)
T 3qky_A 94 ERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR--YPNHELVDDAT--------------QKIRELRAK-----LARKQY 152 (261)
T ss_dssp HHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH--CTTCTTHHHHH--------------HHHHHHHHH-----HHHHHH
T ss_pred HHHHHHHHhcccccccchhHHHHHHHHHHHHHH--CcCchhHHHHH--------------HHHHHHHHH-----HHHHHH
Confidence 88888988 99999999999999884 45532 22111 111111100 012255
Q ss_pred HHHHHHHhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhc----------CChHHHHHHHHHHhhcCCCCch--
Q 036237 458 CLVDILCRTGYLEEAKSTIESM-PMRPN----FVIWMSLLSGARNH----------GNKDIGEYAANNLIKVAPDTIG-- 520 (689)
Q Consensus 458 ~li~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~ll~~~~~~----------g~~~~a~~~~~~~~~~~p~~~~-- 520 (689)
.+...|.+.|++++|...|+++ ...|+ ...+..+..++... |++++|+..++++++..|+++.
T Consensus 153 ~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~ 232 (261)
T 3qky_A 153 EAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPLLR 232 (261)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChHHH
Confidence 6778888899999998888876 22232 44677777777765 8899999999999999998864
Q ss_pred -hHHHHHHHHHhcCCc
Q 036237 521 -CYVVLSNIYAAAGQW 535 (689)
Q Consensus 521 -~~~~L~~~~~~~g~~ 535 (689)
++..+..++.+.|++
T Consensus 233 ~a~~~l~~~~~~~~~~ 248 (261)
T 3qky_A 233 TAEELYTRARQRLTEL 248 (261)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh
Confidence 334444444444443
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.90 E-value=6.2e-09 Score=116.59 Aligned_cols=167 Identities=10% Similarity=-0.008 Sum_probs=139.5
Q ss_pred HhcCCHHHHHHHHHhcC-----------CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhc
Q 036237 362 SKCGSIESALTVFRAIS-----------KKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPT-AITFIGVLNACSH 429 (689)
Q Consensus 362 ~~~g~~~~A~~~~~~~~-----------~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~ 429 (689)
...|++++|++.|++.. ..+...|..+...|.+.|++++|++.|++..+. .|+ ...+..+..++..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAER--VGWRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--HCCCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhcc--CcchHHHHHHHHHHHHH
Confidence 67899999999998876 245678888999999999999999999999873 454 5578888889999
Q ss_pred cCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHH
Q 036237 430 AGLVNDGRRYFNMMINDYGIEPT-IEHYGCLVDILCRTGYLEEAKSTIESM-PMRP-NFVIWMSLLSGARNHGNKDIGEY 506 (689)
Q Consensus 430 ~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~ 506 (689)
.|++++|...|++..+ +.|+ ...|..+..+|.+.|++++ .+.|+++ ...| +...|..+..++...|++++|+.
T Consensus 480 ~g~~~~A~~~~~~al~---l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~ 555 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLD---TFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVR 555 (681)
T ss_dssp HTCHHHHHHHHHHHHH---HSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred cCCHHHHHHHHHHHHH---hCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHH
Confidence 9999999999999884 3454 6788899999999999999 8888876 3344 66789999999999999999999
Q ss_pred HHHHHhhcCCCCchhHHHHHHHHHhcCC
Q 036237 507 AANNLIKVAPDTIGCYVVLSNIYAAAGQ 534 (689)
Q Consensus 507 ~~~~~~~~~p~~~~~~~~L~~~~~~~g~ 534 (689)
.++++++++|+++.++..++.+|...|+
T Consensus 556 ~~~~al~l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 556 TLDEVPPTSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHHTSCTTSTTHHHHHHHHHHHTC----
T ss_pred HHHhhcccCcccHHHHHHHHHHHHccCC
Confidence 9999999999999999999999987766
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=98.89 E-value=3.1e-08 Score=84.99 Aligned_cols=129 Identities=16% Similarity=0.240 Sum_probs=76.0
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHH
Q 036237 384 HWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDIL 463 (689)
Q Consensus 384 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~ 463 (689)
.|..++..+...|++++|+.+|+++.+.. +.+...+..+...+...|++++|..+++.+...
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~----------------- 64 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL----------------- 64 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-----------------
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHH-----------------
Confidence 45556666666666666666666665532 123344445555555555555555555555421
Q ss_pred HhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCcchHHHHHH
Q 036237 464 CRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVRE 543 (689)
Q Consensus 464 ~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~~~~~g~~~~A~~~~~ 543 (689)
.+.+...|..+...+...|+++.|...++++++..|+++..+..++.+|...|++++|...++
T Consensus 65 -----------------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 127 (136)
T 2fo7_A 65 -----------------DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQ 127 (136)
T ss_dssp -----------------CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred -----------------CCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHH
Confidence 112344555555666666666666666666666666666666667777777777777777766
Q ss_pred HHHh
Q 036237 544 MMKK 547 (689)
Q Consensus 544 ~m~~ 547 (689)
++.+
T Consensus 128 ~~~~ 131 (136)
T 2fo7_A 128 KALE 131 (136)
T ss_dssp HHHH
T ss_pred HHHc
Confidence 6654
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=98.89 E-value=4.9e-08 Score=83.67 Aligned_cols=123 Identities=15% Similarity=0.199 Sum_probs=90.9
Q ss_pred HHhHHHhhHHhcCCHHHHHHHHHhcCC---CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc
Q 036237 353 LGTLLIQMYSKCGSIESALTVFRAISK---KKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSH 429 (689)
Q Consensus 353 ~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~ 429 (689)
.+..+...|...|++++|.+.|+++.. .+...|..+...+...|++++|...|+++...+ +.+...+..+...+..
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 81 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYK 81 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHHH
Confidence 567788999999999999999998754 467789999999999999999999999998753 3345577777788888
Q ss_pred cCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHh
Q 036237 430 AGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIES 478 (689)
Q Consensus 430 ~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 478 (689)
.|++++|..+++.+... .+.+...+..++..|.+.|++++|...+++
T Consensus 82 ~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 128 (136)
T 2fo7_A 82 QGDYDEAIEYYQKALEL--DPRSAEAWYNLGNAYYKQGDYDEAIEYYQK 128 (136)
T ss_dssp TTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHHccHHHHHHHHHH
Confidence 88888888888887742 122344444455555555555555444443
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=98.89 E-value=7.7e-08 Score=91.58 Aligned_cols=180 Identities=12% Similarity=0.032 Sum_probs=122.5
Q ss_pred hhHHhHHHhhHHhcCCHHHHHHHHHhcCC--CC----hhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH----HH
Q 036237 351 GVLGTLLIQMYSKCGSIESALTVFRAISK--KK----VGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAI----TF 420 (689)
Q Consensus 351 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~----t~ 420 (689)
...+..+...+.+.|++++|...|+++.. |+ ...+..+..+|.+.|++++|+..|++..+. .|+.. .+
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~--~P~~~~~~~a~ 81 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL--NPTHPNIDYVM 81 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTTHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCCcHHHHH
Confidence 34455566778888888888888888764 32 246777888888888888888888888873 44432 33
Q ss_pred HHHHHHHhc------------------cCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhCCC
Q 036237 421 IGVLNACSH------------------AGLVNDGRRYFNMMINDYGIEPT-IEHYGCLVDILCRTGYLEEAKSTIESMPM 481 (689)
Q Consensus 421 ~~ll~a~~~------------------~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 481 (689)
..+..++.. .|+.++|...|+.+++ ..|+ ...+.++..+. .+.+..
T Consensus 82 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~---~~P~~~~a~~a~~~l~----~~~~~~-------- 146 (225)
T 2yhc_A 82 YMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVR---GYPNSQYTTDATKRLV----FLKDRL-------- 146 (225)
T ss_dssp HHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHT---TCTTCTTHHHHHHHHH----HHHHHH--------
T ss_pred HHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHH---HCcCChhHHHHHHHHH----HHHHHH--------
Confidence 334444433 4667777777777763 2343 22222111110 000000
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCc---hhHHHHHHHHHhcCCcchHHHHHHHHHhCCC
Q 036237 482 RPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTI---GCYVVLSNIYAAAGQWDKVSEVREMMKKRGF 550 (689)
Q Consensus 482 ~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~---~~~~~L~~~~~~~g~~~~A~~~~~~m~~~~~ 550 (689)
......+...+...|+++.|+..++++++..|+++ .++..++.+|.+.|++++|.+.++.+...+.
T Consensus 147 ---~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~ 215 (225)
T 2yhc_A 147 ---AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSS 215 (225)
T ss_dssp ---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCS
T ss_pred ---HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCC
Confidence 01123456678899999999999999999999876 5689999999999999999999999887654
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=98.87 E-value=5.6e-08 Score=96.40 Aligned_cols=176 Identities=10% Similarity=0.001 Sum_probs=139.8
Q ss_pred CHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhH
Q 036237 366 SIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPT-AITFIGVLNACSHAGLVNDGRRYFNMMI 444 (689)
Q Consensus 366 ~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~ 444 (689)
..+...+.+......+...+..+...+.+.|++++|+..|++..+ ..|+ ...+..+...+...|++++|...++.+.
T Consensus 101 ~~~~l~~~l~~~lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~ 178 (287)
T 3qou_A 101 PEEAIRALLDXVLPREEELXAQQAMQLMQESNYTDALPLLXDAWQ--LSNQNGEIGLLLAETLIALNRSEDAEAVLXTIP 178 (287)
T ss_dssp CHHHHHHHHHHHSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSC
T ss_pred CHHHHHHHHHHHcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHH--hCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 344555566665555666777888889999999999999999887 4564 4577888889999999999999999887
Q ss_pred HhcCCCCChhHHHH-HHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCC--c
Q 036237 445 NDYGIEPTIEHYGC-LVDILCRTGYLEEAKSTIESM-PMRP-NFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDT--I 519 (689)
Q Consensus 445 ~~~~~~p~~~~~~~-li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~--~ 519 (689)
. ..|+...... ....+.+.|+.++|...+++. ...| +...+..+...+...|++++|+..++++++.+|++ .
T Consensus 179 ~---~~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~ 255 (287)
T 3qou_A 179 L---QDQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADG 255 (287)
T ss_dssp G---GGCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGG
T ss_pred h---hhcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccc
Confidence 3 3566443332 233466778888888888775 2334 67799999999999999999999999999999987 8
Q ss_pred hhHHHHHHHHHhcCCcchHHHHHHHHH
Q 036237 520 GCYVVLSNIYAAAGQWDKVSEVREMMK 546 (689)
Q Consensus 520 ~~~~~L~~~~~~~g~~~~A~~~~~~m~ 546 (689)
.++..|+.+|...|+.++|...+++..
T Consensus 256 ~a~~~l~~~~~~~g~~~~a~~~~r~al 282 (287)
T 3qou_A 256 QTRXTFQEILAALGTGDALASXYRRQL 282 (287)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHcCCCCcHHHHHHHHH
Confidence 899999999999999999998887654
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=98.86 E-value=2.6e-07 Score=90.49 Aligned_cols=180 Identities=12% Similarity=0.032 Sum_probs=130.6
Q ss_pred HHHHHHHHHHhCCccchhHHhHHHhhHHhcCCHHHHHHHHHhcCCC-----ChhhHHHHHHHHHHcCCHHHHHHHHHHHH
Q 036237 335 GRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKK-----KVGHWTAMIVGLGMHGMATQALDLFNKMC 409 (689)
Q Consensus 335 a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 409 (689)
+...++..+..+ .++......+..+|...|++++|++++.+.... +...+..++..|.+.|+.+.|.+.+++|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 445555555444 344444557788888889999999999887432 45577788899999999999999999998
Q ss_pred HCCCCC-----CHHHHHHHHHH--HhccC--cHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCC
Q 036237 410 RMGMKP-----TAITFIGVLNA--CSHAG--LVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMP 480 (689)
Q Consensus 410 ~~g~~p-----~~~t~~~ll~a--~~~~g--~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 480 (689)
+ ..| +..+...+..+ ....| +..+|..+|+++.. -.|+......+..++.+.|++++|.+.++.+.
T Consensus 164 ~--~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~---~~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~ 238 (310)
T 3mv2_B 164 N--AIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQ---TFPTWKTQLGLLNLHLQQRNIAEAQGIVELLL 238 (310)
T ss_dssp H--HSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHT---TSCSHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred h--cCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHH---hCCCcccHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 7 467 35566666655 33334 89999999999874 34553333444558999999999999987642
Q ss_pred C-----------CC-CHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchhH
Q 036237 481 M-----------RP-NFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCY 522 (689)
Q Consensus 481 ~-----------~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 522 (689)
. .| |+.+...++......|+ .|.++++++.+..|++|...
T Consensus 239 ~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i~ 290 (310)
T 3mv2_B 239 SDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAFIK 290 (310)
T ss_dssp SHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHHH
T ss_pred HhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHHH
Confidence 1 24 55667677767677787 88999999999999987443
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.81 E-value=2.2e-07 Score=87.45 Aligned_cols=172 Identities=8% Similarity=-0.083 Sum_probs=131.2
Q ss_pred HHHHHHhcCC-CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC----cHHHHHHHHHHhH
Q 036237 370 ALTVFRAISK-KKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAG----LVNDGRRYFNMMI 444 (689)
Q Consensus 370 A~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g----~~~~a~~~~~~~~ 444 (689)
|.+.|++..+ .++.++..|...|...+++++|++.|++..+.| +...+..|...|.. + +.++|..+|+...
T Consensus 5 A~~~~~~aa~~g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~ 80 (212)
T 3rjv_A 5 PGSQYQQQAEAGDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAV 80 (212)
T ss_dssp TTHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHH
Confidence 3344443332 466677777777888888888888888887765 45566666666666 6 7888888888886
Q ss_pred HhcCCCCChhHHHHHHHHHHh----cCCHHHHHHHHHhCC-CCCC---HHHHHHHHHHHHh----cCChHHHHHHHHHHh
Q 036237 445 NDYGIEPTIEHYGCLVDILCR----TGYLEEAKSTIESMP-MRPN---FVIWMSLLSGARN----HGNKDIGEYAANNLI 512 (689)
Q Consensus 445 ~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~~~-~~p~---~~~~~~ll~~~~~----~g~~~~a~~~~~~~~ 512 (689)
+. -+...+..|..+|.. .+++++|.+.+++.- ..|. +..+..|...|.. .++.+.|+..++++.
T Consensus 81 ~~----g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~ 156 (212)
T 3rjv_A 81 EA----GSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSS 156 (212)
T ss_dssp HT----TCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHH
T ss_pred HC----CCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH
Confidence 42 356677778888877 788999999988864 3342 7788888888888 789999999999999
Q ss_pred hcCCCCchhHHHHHHHHHhc-C-----CcchHHHHHHHHHhCCC
Q 036237 513 KVAPDTIGCYVVLSNIYAAA-G-----QWDKVSEVREMMKKRGF 550 (689)
Q Consensus 513 ~~~p~~~~~~~~L~~~~~~~-g-----~~~~A~~~~~~m~~~~~ 550 (689)
+. |.++.++..|+.+|... | ++++|..++++..+.|.
T Consensus 157 ~~-~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 157 SL-SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HT-SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred Hc-CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 88 66778999999999865 3 89999999999887664
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=98.79 E-value=3.2e-08 Score=87.45 Aligned_cols=122 Identities=9% Similarity=-0.088 Sum_probs=102.3
Q ss_pred HHHHHhccCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcC
Q 036237 423 VLNACSHAGLVNDGRRYFNMMINDYGIEPT-IEHYGCLVDILCRTGYLEEAKSTIESM-PMRP-NFVIWMSLLSGARNHG 499 (689)
Q Consensus 423 ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g 499 (689)
|...+...|++++|+..++... ...|+ ...+-.+..+|.+.|++++|.+.|++. ...| +..+|..+...+...|
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~---~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~ 79 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGST---PSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEE 79 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHS---CSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred hHHHHHHcChHHHHHHHHHHhc---ccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence 3445667889999999998876 34454 456678999999999999999999986 3445 6789999999999999
Q ss_pred ChHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCcchHHHH-HHHHHh
Q 036237 500 NKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEV-REMMKK 547 (689)
Q Consensus 500 ~~~~a~~~~~~~~~~~p~~~~~~~~L~~~~~~~g~~~~A~~~-~~~m~~ 547 (689)
+++.|+..++++++++|+++.++..++.+|.+.|++++|.+. +++..+
T Consensus 80 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~ 128 (150)
T 4ga2_A 80 NTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAK 128 (150)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999987765 576665
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.76 E-value=6.4e-08 Score=88.15 Aligned_cols=76 Identities=17% Similarity=0.120 Sum_probs=59.6
Q ss_pred HHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCC--chhHHHHHHHHHhcCCcchHHHHHHHHHh
Q 036237 472 AKSTIESM-PMRP-NFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDT--IGCYVVLSNIYAAAGQWDKVSEVREMMKK 547 (689)
Q Consensus 472 A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~--~~~~~~L~~~~~~~g~~~~A~~~~~~m~~ 547 (689)
|...+++. ...| +...+..+...+...|++++|+..++++++.+|+. +..+..++.+|...|+.++|...+++...
T Consensus 93 a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~al~ 172 (176)
T 2r5s_A 93 ELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYRRQLY 172 (176)
T ss_dssp HHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHHHHHH
Confidence 44444443 2234 57788888888999999999999999999998864 55888999999999999999988887653
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.75 E-value=4.9e-08 Score=86.08 Aligned_cols=102 Identities=11% Similarity=-0.037 Sum_probs=90.0
Q ss_pred CCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchhHHH
Q 036237 448 GIEPT-IEHYGCLVDILCRTGYLEEAKSTIESM-PMRP-NFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVV 524 (689)
Q Consensus 448 ~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 524 (689)
.+.|+ ...+..+...|.+.|++++|...|++. ...| +...|..+..++...|++++|+..|+++++++|+++.++..
T Consensus 30 ~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~ 109 (151)
T 3gyz_A 30 AIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFH 109 (151)
T ss_dssp CSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHH
Confidence 45555 567788888999999999999999886 3344 68899999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCcchHHHHHHHHHhCC
Q 036237 525 LSNIYAAAGQWDKVSEVREMMKKRG 549 (689)
Q Consensus 525 L~~~~~~~g~~~~A~~~~~~m~~~~ 549 (689)
++.+|.+.|++++|...+++..+..
T Consensus 110 lg~~~~~lg~~~eA~~~~~~al~l~ 134 (151)
T 3gyz_A 110 TGQCQLRLKAPLKAKECFELVIQHS 134 (151)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 9999999999999999999988743
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.74 E-value=1.6e-07 Score=88.22 Aligned_cols=125 Identities=10% Similarity=0.076 Sum_probs=97.9
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHh
Q 036237 388 MIVGLGMHGMATQALDLFNKMCRMGMKPT-AITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPT-IEHYGCLVDILCR 465 (689)
Q Consensus 388 li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~ 465 (689)
+...|.+.|++++|+..|++..+ ..|+ ...+..+..++...|++++|...|+++.+ +.|+ ...+..+...|..
T Consensus 60 lg~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~---~~P~~~~a~~~lg~~~~~ 134 (208)
T 3urz_A 60 LALAYKKNRNYDKAYLFYKELLQ--KAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQ---LEADNLAANIFLGNYYYL 134 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---cCCCCHHHHHHHHHHHHH
Confidence 88899999999999999999988 4564 56788888999999999999999999984 3454 7788888888876
Q ss_pred cCC--HHHHHHHHHhCCCCCCH--HHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCC
Q 036237 466 TGY--LEEAKSTIESMPMRPNF--VIWMSLLSGARNHGNKDIGEYAANNLIKVAPDT 518 (689)
Q Consensus 466 ~g~--~~~A~~~~~~~~~~p~~--~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 518 (689)
.|. .+++...++... .|+. ..|..+..++...|++++|+..+++++++.|++
T Consensus 135 ~~~~~~~~~~~~~~~~~-~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~ 190 (208)
T 3urz_A 135 TAEQEKKKLETDYKKLS-SPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPST 190 (208)
T ss_dssp HHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCH
T ss_pred HhHHHHHHHHHHHHHHh-CCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCH
Confidence 654 445566666653 3443 345556667778899999999999999999964
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.74 E-value=1e-07 Score=104.62 Aligned_cols=159 Identities=13% Similarity=0.027 Sum_probs=124.2
Q ss_pred cCCHHHHHHHHHhcCC---CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCcHHHHHHH
Q 036237 364 CGSIESALTVFRAISK---KKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPT-AITFIGVLNACSHAGLVNDGRRY 439 (689)
Q Consensus 364 ~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~ 439 (689)
.|++++|.+.|++..+ .+...|..+...|.+.|++++|++.|++..+. .|+ ...+..+..++...|++++|.+.
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLAL--HPGHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--STTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 4788999999998875 35678999999999999999999999999884 554 56888889999999999999999
Q ss_pred HHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc---CChHHHHHHHHHHhhc
Q 036237 440 FNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESM-PMRP-NFVIWMSLLSGARNH---GNKDIGEYAANNLIKV 514 (689)
Q Consensus 440 ~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~---g~~~~a~~~~~~~~~~ 514 (689)
|++..+. .+.+...+..+..+|.+.|++++|.+.+++. ...| +...+..+...+... |+.++|...++++++.
T Consensus 80 ~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 80 LQQASDA--APEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHhc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 9999852 2334788999999999999999999999986 2334 677899999999999 9999999999999999
Q ss_pred CCCCchhHHHHH
Q 036237 515 APDTIGCYVVLS 526 (689)
Q Consensus 515 ~p~~~~~~~~L~ 526 (689)
+|++...+..++
T Consensus 158 ~p~~~~~~~~l~ 169 (568)
T 2vsy_A 158 GVGAVEPFAFLS 169 (568)
T ss_dssp TCCCSCHHHHTT
T ss_pred CCcccChHHHhC
Confidence 999988887776
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.69 E-value=6.8e-08 Score=85.09 Aligned_cols=101 Identities=10% Similarity=0.070 Sum_probs=86.5
Q ss_pred CCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchhHHH
Q 036237 448 GIEPT-IEHYGCLVDILCRTGYLEEAKSTIESM-PMRP-NFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVV 524 (689)
Q Consensus 448 ~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 524 (689)
.+.|+ ...+..+...+.+.|++++|...|++. ...| +...|..+..++...|++++|+..++++++++|+++..+..
T Consensus 15 ~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~ 94 (148)
T 2vgx_A 15 EISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFH 94 (148)
T ss_dssp TCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHH
T ss_pred cCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHH
Confidence 34453 566777888888999999999998876 2334 77889999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCcchHHHHHHHHHhC
Q 036237 525 LSNIYAAAGQWDKVSEVREMMKKR 548 (689)
Q Consensus 525 L~~~~~~~g~~~~A~~~~~~m~~~ 548 (689)
++.+|...|++++|...+++..+.
T Consensus 95 lg~~~~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 95 AAECLLQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHH
Confidence 999999999999999999988753
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.69 E-value=2.6e-07 Score=101.47 Aligned_cols=145 Identities=10% Similarity=-0.061 Sum_probs=88.9
Q ss_pred cchhhHHHHHHHHHHhCCccchhHHhHHHhhHHhcCCHHHHHHHHHhcCC---CChhhHHHHHHHHHHcCCHHHHHHHHH
Q 036237 330 AVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISK---KKVGHWTAMIVGLGMHGMATQALDLFN 406 (689)
Q Consensus 330 ~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~ 406 (689)
|++++|...++.+.+.. +.+...+..+...|.+.|++++|.+.|++..+ .+...|..+...|...|++++|++.|+
T Consensus 3 g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~ 81 (568)
T 2vsy_A 3 ADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQ 81 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 56677777777766543 23456677777777777778777777777654 345567777777777777888877777
Q ss_pred HHHHCCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhc---CCHHHHHHHHHhC
Q 036237 407 KMCRMGMKPT-AITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRT---GYLEEAKSTIESM 479 (689)
Q Consensus 407 ~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~---g~~~~A~~~~~~~ 479 (689)
+..+. .|+ ...+..+..++...|++++|.+.|++..+. .+.+...+..+...|... |++++|.+.+++.
T Consensus 82 ~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~a 154 (568)
T 2vsy_A 82 QASDA--APEHPGIALWLGHALEDAGQAEAAAAAYTRAHQL--LPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAA 154 (568)
T ss_dssp HHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHH
T ss_pred HHHhc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHH
Confidence 77763 343 456777777777777778887777777642 122356677777777777 7777777777765
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.67 E-value=3.6e-07 Score=91.54 Aligned_cols=219 Identities=11% Similarity=0.044 Sum_probs=153.5
Q ss_pred cCChHHHHHHHHHhccCCCCcChhhHHHHHHHHHcccchhhHHHHHHHHHHhCCccchhHHhHHHhhHHhcCCHHHHHHH
Q 036237 294 NGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTV 373 (689)
Q Consensus 294 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~ 373 (689)
.|++++|.+++++..+.. +.. + +...++++.|...+..+ ...|...|++++|...
T Consensus 4 ~~~~~eA~~~~~~a~k~~--~~~--~------~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~ 58 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYL--KTS--F------MKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAKDA 58 (307)
T ss_dssp HHHHHHHHHHHHHHHHHH--CCC--S------SSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHc--ccc--c------cCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHHHH
Confidence 577888999888776421 110 0 01135666666666543 4567788999988888
Q ss_pred HHhcCC-----CC----hhhHHHHHHHHHHcCCHHHHHHHHHHHHHCC---CCCC--HHHHHHHHHHHhccCcHHHHHHH
Q 036237 374 FRAISK-----KK----VGHWTAMIVGLGMHGMATQALDLFNKMCRMG---MKPT--AITFIGVLNACSHAGLVNDGRRY 439 (689)
Q Consensus 374 ~~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g---~~p~--~~t~~~ll~a~~~~g~~~~a~~~ 439 (689)
|.+... .+ ..+|+.+...|.+.|++++|+..|++..+.- -.|. ..++..+...+.. |++++|+..
T Consensus 59 ~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~ 137 (307)
T 2ifu_A 59 YLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHL 137 (307)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHH
Confidence 876653 12 3478888999999999999999999876531 1222 3467788888888 999999999
Q ss_pred HHHhHHhcCCCCC----hhHHHHHHHHHHhcCCHHHHHHHHHhCC----CCCC----HHHHHHHHHHHHhcCChHHHHHH
Q 036237 440 FNMMINDYGIEPT----IEHYGCLVDILCRTGYLEEAKSTIESMP----MRPN----FVIWMSLLSGARNHGNKDIGEYA 507 (689)
Q Consensus 440 ~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~~~----~~p~----~~~~~~ll~~~~~~g~~~~a~~~ 507 (689)
|++...-+.-..+ ..++..+...|.+.|++++|...+++.- ..++ ...+..++..+...|+++.|...
T Consensus 138 ~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~ 217 (307)
T 2ifu_A 138 YQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKC 217 (307)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 9988743211111 4678889999999999999999998761 1122 23667777778888999999999
Q ss_pred HHHHhhcCCCCchh-----HHHHHHHHHhcCCcchHHH
Q 036237 508 ANNLIKVAPDTIGC-----YVVLSNIYAAAGQWDKVSE 540 (689)
Q Consensus 508 ~~~~~~~~p~~~~~-----~~~L~~~~~~~g~~~~A~~ 540 (689)
+++++ +.|..... ...++.+| ..|+.+.+.+
T Consensus 218 ~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 218 VRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp HHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred HHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence 99999 99975432 34555555 5677655554
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.67 E-value=7.9e-07 Score=88.34 Aligned_cols=164 Identities=7% Similarity=-0.036 Sum_probs=123.1
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-H----HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCC--CCC--h
Q 036237 383 GHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPT-A----ITFIGVLNACSHAGLVNDGRRYFNMMINDYGI--EPT--I 453 (689)
Q Consensus 383 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~----~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~--~p~--~ 453 (689)
..+...+..+...|++++|++.+++..+.....+ . ..+..+...+...|++++|...++.......- .+. .
T Consensus 76 ~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 155 (293)
T 2qfc_A 76 KQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNL 155 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHH
Confidence 3455667788899999999999988877432211 1 12334556677888999999999988742211 112 4
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhCC----CCCC-----HHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCC------C
Q 036237 454 EHYGCLVDILCRTGYLEEAKSTIESMP----MRPN-----FVIWMSLLSGARNHGNKDIGEYAANNLIKVAPD------T 518 (689)
Q Consensus 454 ~~~~~li~~~~~~g~~~~A~~~~~~~~----~~p~-----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~------~ 518 (689)
..|+.+...|...|++++|...++++- ..|+ ..++..+...|...|++++|+..+++++++.++ .
T Consensus 156 ~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~ 235 (293)
T 2qfc_A 156 YIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALI 235 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHH
Confidence 578899999999999999999988751 1122 258889999999999999999999999885432 1
Q ss_pred chhHHHHHHHHHhcCCcchH-HHHHHHHH
Q 036237 519 IGCYVVLSNIYAAAGQWDKV-SEVREMMK 546 (689)
Q Consensus 519 ~~~~~~L~~~~~~~g~~~~A-~~~~~~m~ 546 (689)
..+|..++.+|.+.|++++| ...+++..
T Consensus 236 ~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 236 GQLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 56789999999999999999 77777664
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.66 E-value=8.1e-07 Score=99.42 Aligned_cols=187 Identities=11% Similarity=0.039 Sum_probs=144.0
Q ss_pred HcccchhhHHHHHHHHH--------HhCCccchhHHhHHHhhHHhcCCHHHHHHHHHhcCC---CChhhHHHHHHHHHHc
Q 036237 327 AGLAVLNKGRWMHSYIV--------KNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISK---KKVGHWTAMIVGLGMH 395 (689)
Q Consensus 327 ~~~~~~~~a~~i~~~~~--------~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~ 395 (689)
...|++++|.+.++.+. +. .+.+...+..+...|.+.|++++|.+.|+++.+ .+...|..+...|.+.
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~-~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVD-FSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLT 480 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------C-CTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccc-cccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHc
Confidence 66778888888888777 32 244567788888999999999999999998775 4677899999999999
Q ss_pred CCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCCHHHHH
Q 036237 396 GMATQALDLFNKMCRMGMKPT-AITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPT-IEHYGCLVDILCRTGYLEEAK 473 (689)
Q Consensus 396 g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~ 473 (689)
|++++|++.|++..+ ..|+ ...+..+..++...|++++ +..|+++.+ +.|+ ...|..+..+|.+.|++++|.
T Consensus 481 g~~~~A~~~~~~al~--l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~---~~P~~~~a~~~lg~~~~~~g~~~~A~ 554 (681)
T 2pzi_A 481 GDYDSATKHFTEVLD--TFPGELAPKLALAATAELAGNTDE-HKFYQTVWS---TNDGVISAAFGLARARSAEGDRVGAV 554 (681)
T ss_dssp TCHHHHHHHHHHHHH--HSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred CCHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHH---hCCchHHHHHHHHHHHHHcCCHHHHH
Confidence 999999999999988 4564 5578888899999999999 999999984 3454 688999999999999999999
Q ss_pred HHHHhC-CCCCC-HHHHHHHHHHHHhcCC-----hHHHHHHHHHHhhcCCCCch
Q 036237 474 STIESM-PMRPN-FVIWMSLLSGARNHGN-----KDIGEYAANNLIKVAPDTIG 520 (689)
Q Consensus 474 ~~~~~~-~~~p~-~~~~~~ll~~~~~~g~-----~~~a~~~~~~~~~~~p~~~~ 520 (689)
+.++++ ...|+ ...|..+..++...++ .+...++.+.+.++.++++.
T Consensus 555 ~~~~~al~l~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~~~ 608 (681)
T 2pzi_A 555 RTLDEVPPTSRHFTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVEALPPTEPR 608 (681)
T ss_dssp HHHHTSCTTSTTHHHHHHHHHHHTC-------CCHHHHHHHHHHHHTSCTTSTT
T ss_pred HHHHhhcccCcccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHhhCCCCcHH
Confidence 999997 46676 4578888888766555 23333344444445454444
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=98.66 E-value=8.1e-06 Score=87.17 Aligned_cols=365 Identities=10% Similarity=-0.036 Sum_probs=185.0
Q ss_pred CC-CchHHHHHHHHhHhCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCC-hHHHH
Q 036237 100 NQ-RSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGE-IDLGR 177 (689)
Q Consensus 100 ~g-~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~-~~~A~ 177 (689)
.| +...|..+|+.+... .|. ++.+.+..+|++.+.. .|++.+|...+..-.+.++ .+...
T Consensus 7 ~~~~i~~aR~vyer~l~~--~P~--------------~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~~i~ 68 (493)
T 2uy1_A 7 MGVELSSPSAIMEHARRL--YMS--------------KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKFKLY 68 (493)
T ss_dssp -----CCHHHHHHHHHHH--HHT--------------TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----CTH
T ss_pred cCcchHHHHHHHHHHHHH--CCC--------------CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHHHHH
Confidence 45 477888888887753 233 8899999999999875 4788899988888877763 35566
Q ss_pred HHHhhCC------CCCeehHHHHHHHHH----hCCChHHHHHHHhhCCCCCcchHHHHHHHHHh---CCChHHHHHHHhh
Q 036237 178 RVFDAMD------DKDLVSWNCLIDGYV----KKGEVEVAMKLFDEMPDRDLFSWTCLVDGFSK---CGKVEIAREIFYR 244 (689)
Q Consensus 178 ~~~~~m~------~~~~~~~~~li~~~~----~~g~~~~A~~~~~~m~~~d~~~~~~li~~~~~---~g~~~~A~~~~~~ 244 (689)
.+|+... ..+...|...+.-+. .+|+++.+.++|++...-....+..+-..|.. ......+.++...
T Consensus 69 ~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~ 148 (493)
T 2uy1_A 69 EVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGD 148 (493)
T ss_dssp HHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHHH
Confidence 6666533 235567777776544 34667788888888765211112222222211 1112222222221
Q ss_pred cCcCCcchHHHHHHHHHhcCCHHHHHHHHHhcC----CCChHHHHHHHHHHHHcC--C-----hHHHHHHHHHhccCCCC
Q 036237 245 MPNRNLVSWNAMINGYMKAGDVDSACELFDDME----IRDLITWNSMIAGYELNG--R-----FMEALELLETMLIGDVL 313 (689)
Q Consensus 245 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~g--~-----~~~A~~~~~~m~~~g~~ 313 (689)
.. +.+..|..+++.+. ..+...|...+.--..++ - .+.+..+|++++... +
T Consensus 149 ~~-----------------~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~-p 210 (493)
T 2uy1_A 149 TL-----------------PIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSF-Y 210 (493)
T ss_dssp HH-----------------HHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-T
T ss_pred Hh-----------------HHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcC-C
Confidence 10 11222332222221 113345655444322211 0 234566777776532 3
Q ss_pred cChhhHHHHHHHHHcccchhhHHHHHHHHHHhCCccchhHHhHHHhhHHhcCCHHHH-HHHHHhcC------------CC
Q 036237 314 PNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESA-LTVFRAIS------------KK 380 (689)
Q Consensus 314 p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A-~~~~~~~~------------~~ 380 (689)
.+...|...+.-+...|+++.|..+++..++. +.+...+.. |+...+.++. ..+.+... ..
T Consensus 211 ~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~~----y~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~ 284 (493)
T 2uy1_A 211 YAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSLY----YGLVMDEEAVYGDLKRKYSMGEAESAEKVFSKE 284 (493)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHHH----HHHHTTCTHHHHHHHHHTC----------CHHH
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHHH----HHhhcchhHHHHHHHHHHHhhccchhhhhcccc
Confidence 33455555555566677788888888887777 333333322 2221111111 11111100 00
Q ss_pred ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh-ccCcHHHHHHHHHHhHHhcCCCCChhHHHHH
Q 036237 381 KVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACS-HAGLVNDGRRYFNMMINDYGIEPTIEHYGCL 459 (689)
Q Consensus 381 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~-~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l 459 (689)
....|...+..+.+.+..+.|..+|++. ... .++...|......-. ..++.+.|+.+|+...+.++ -++..+...
T Consensus 285 ~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~-~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~--~~~~~~~~y 360 (493)
T 2uy1_A 285 LDLLRINHLNYVLKKRGLELFRKLFIEL-GNE-GVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHP--DSTLLKEEF 360 (493)
T ss_dssp HHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTS-CCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCT--TCHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCC-CCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCC--CCHHHHHHH
Confidence 1134555555555566677777777766 211 112223321111111 12246777777777665332 123344555
Q ss_pred HHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 036237 460 VDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLI 512 (689)
Q Consensus 460 i~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 512 (689)
++...+.|+.+.|..+|+++. .....|...+.--..+|+.+.+..++++.+
T Consensus 361 id~e~~~~~~~~aR~l~er~~--k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~ 411 (493)
T 2uy1_A 361 FLFLLRIGDEENARALFKRLE--KTSRMWDSMIEYEFMVGSMELFRELVDQKM 411 (493)
T ss_dssp HHHHHHHTCHHHHHHHHHHSC--CBHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHH--HHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 666666677777777777663 234555555555555566555555555544
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.65 E-value=2.4e-07 Score=78.91 Aligned_cols=108 Identities=10% Similarity=-0.003 Sum_probs=70.6
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHH
Q 036237 419 TFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESM-PMRP-NFVIWMSLLSGAR 496 (689)
Q Consensus 419 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~ 496 (689)
.+......+.+.|++++|++.|++.++. -+.+...|..+..+|.+.|++++|+..+++. ...| +...|..+..++.
T Consensus 15 ~~~~~G~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~ 92 (126)
T 4gco_A 15 EEKNKGNEYFKKGDYPTAMRHYNEAVKR--DPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLV 92 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Confidence 4555556666666666666666666531 1223556666666666667777766666654 2233 4567777777777
Q ss_pred hcCChHHHHHHHHHHhhcCCCCchhHHHHHHH
Q 036237 497 NHGNKDIGEYAANNLIKVAPDTIGCYVVLSNI 528 (689)
Q Consensus 497 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~ 528 (689)
..|++++|+..++++++++|+++.++..|.++
T Consensus 93 ~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~ 124 (126)
T 4gco_A 93 AMREWSKAQRAYEDALQVDPSNEEAREGVRNC 124 (126)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHh
Confidence 78888888888888888888777776666554
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.64 E-value=2.7e-06 Score=84.49 Aligned_cols=160 Identities=8% Similarity=-0.023 Sum_probs=119.8
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCC-CCCCHH----HHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC----hhHHH
Q 036237 387 AMIVGLGMHGMATQALDLFNKMCRMG-MKPTAI----TFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPT----IEHYG 457 (689)
Q Consensus 387 ~li~~~~~~g~~~~A~~l~~~m~~~g-~~p~~~----t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~ 457 (689)
..+..+...|++++|..++++..... ..|+.. .+..+...+...|++++|...|+.+.....-.++ ...++
T Consensus 80 ~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~ 159 (293)
T 3u3w_A 80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIEN 159 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHH
Confidence 34667888899999999999887632 122221 2334666677788999999999988852222233 23688
Q ss_pred HHHHHHHhcCCHHHHHHHHHhCC--------CCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCC------chhH
Q 036237 458 CLVDILCRTGYLEEAKSTIESMP--------MRPN-FVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDT------IGCY 522 (689)
Q Consensus 458 ~li~~~~~~g~~~~A~~~~~~~~--------~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~ 522 (689)
.+...|...|++++|...++++- ..+. ..+|..+...|...|++++|+..+++++++.+.. +.+|
T Consensus 160 ~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~ 239 (293)
T 3u3w_A 160 AIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLY 239 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 89999999999999998887761 1122 3378899999999999999999999998855432 5689
Q ss_pred HHHHHHHHhcCC-cchHHHHHHHHH
Q 036237 523 VVLSNIYAAAGQ-WDKVSEVREMMK 546 (689)
Q Consensus 523 ~~L~~~~~~~g~-~~~A~~~~~~m~ 546 (689)
..++.+|.+.|+ +++|.+.+++..
T Consensus 240 ~~lg~~~~~~g~~~~~A~~~~~~Al 264 (293)
T 3u3w_A 240 YQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHH
Confidence 999999999995 599999988875
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.63 E-value=1.8e-07 Score=79.68 Aligned_cols=99 Identities=13% Similarity=0.132 Sum_probs=90.1
Q ss_pred CCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchhHHHH
Q 036237 449 IEPT-IEHYGCLVDILCRTGYLEEAKSTIESM-PMRP-NFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVL 525 (689)
Q Consensus 449 ~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L 525 (689)
+.|+ ...+......|.+.|++++|.+.|++. ...| +...|..+..++...|++++|+..++++++++|+++.+|..+
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l 87 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRK 87 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHH
Confidence 5566 467888999999999999999999986 3344 688999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCcchHHHHHHHHHh
Q 036237 526 SNIYAAAGQWDKVSEVREMMKK 547 (689)
Q Consensus 526 ~~~~~~~g~~~~A~~~~~~m~~ 547 (689)
+.+|...|++++|.+.+++..+
T Consensus 88 g~~~~~~~~~~~A~~~~~~al~ 109 (126)
T 4gco_A 88 AACLVAMREWSKAQRAYEDALQ 109 (126)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHH
Confidence 9999999999999999999876
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.62 E-value=4e-07 Score=82.79 Aligned_cols=155 Identities=11% Similarity=-0.044 Sum_probs=116.0
Q ss_pred HhHHHhhHHhcCCHHHHHHHHHhcCC---CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-Hhc
Q 036237 354 GTLLIQMYSKCGSIESALTVFRAISK---KKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNA-CSH 429 (689)
Q Consensus 354 ~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a-~~~ 429 (689)
...+...+.+.|++++|...|++... .+...|..+...|.+.|++++|+..|++.... .|+...+..+... +..
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~--~p~~~~~~~~~~~~~~~ 86 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLE--YQDNSYKSLIAKLELHQ 86 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG--GCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc--cCChHHHHHHHHHHHHh
Confidence 34466678888999999999998875 46678899999999999999999999987763 4443332222111 122
Q ss_pred cCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC---HHHHHHHHHHHHhcCChHHH
Q 036237 430 AGLVNDGRRYFNMMINDYGIEPT-IEHYGCLVDILCRTGYLEEAKSTIESM-PMRPN---FVIWMSLLSGARNHGNKDIG 504 (689)
Q Consensus 430 ~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~---~~~~~~ll~~~~~~g~~~~a 504 (689)
.+...+|...++...+ ..|+ ...+..+...|...|++++|...++++ ...|+ ...|..+...+...|+.++|
T Consensus 87 ~~~~~~a~~~~~~al~---~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A 163 (176)
T 2r5s_A 87 QAAESPELKRLEQELA---ANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAI 163 (176)
T ss_dssp HHTSCHHHHHHHHHHH---HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHH
T ss_pred hcccchHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcH
Confidence 2223346788888874 3454 788889999999999999999999886 44453 56888999999999999999
Q ss_pred HHHHHHHhh
Q 036237 505 EYAANNLIK 513 (689)
Q Consensus 505 ~~~~~~~~~ 513 (689)
...+++.+.
T Consensus 164 ~~~y~~al~ 172 (176)
T 2r5s_A 164 ASKYRRQLY 172 (176)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999988764
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=98.61 E-value=9.7e-07 Score=83.86 Aligned_cols=184 Identities=10% Similarity=-0.053 Sum_probs=131.8
Q ss_pred hhhHHHHHHHHHcccchhhHHHHHHHHHHhCCccc--hhHHhHHHhhHHhcCCHHHHHHHHHhcCC--CC-h---hhHHH
Q 036237 316 DATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVD--GVLGTLLIQMYSKCGSIESALTVFRAISK--KK-V---GHWTA 387 (689)
Q Consensus 316 ~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~-~---~~~~~ 387 (689)
...+......+...|++++|...+..+++...... ...+..+..+|.+.|++++|+..|+++.+ |+ . ..+..
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~ 83 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYM 83 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHH
Confidence 34455566778899999999999999998754322 35677789999999999999999999864 32 2 24555
Q ss_pred HHHHHHH------------------cCCHHHHHHHHHHHHHCCCCCCHHH-HHHHHHHHhccCcHHHHHHHHHHhHHhcC
Q 036237 388 MIVGLGM------------------HGMATQALDLFNKMCRMGMKPTAIT-FIGVLNACSHAGLVNDGRRYFNMMINDYG 448 (689)
Q Consensus 388 li~~~~~------------------~g~~~~A~~l~~~m~~~g~~p~~~t-~~~ll~a~~~~g~~~~a~~~~~~~~~~~~ 448 (689)
+..++.+ .|++++|+..|++..+ ..|+... ..... ..+ .+...+.
T Consensus 84 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~--~~P~~~~a~~a~~----~l~------~~~~~~~---- 147 (225)
T 2yhc_A 84 RGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVR--GYPNSQYTTDATK----RLV------FLKDRLA---- 147 (225)
T ss_dssp HHHHHHHHHC--------------CCHHHHHHHHHHHHHHT--TCTTCTTHHHHHH----HHH------HHHHHHH----
T ss_pred HHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHH--HCcCChhHHHHHH----HHH------HHHHHHH----
Confidence 6666654 5789999999999997 4566542 22111 100 0111111
Q ss_pred CCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCch
Q 036237 449 IEPTIEHYGCLVDILCRTGYLEEAKSTIESM-PMRPN----FVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIG 520 (689)
Q Consensus 449 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 520 (689)
.....+...|.+.|++++|...|+++ ...|+ ...+..+..++.+.|+.++|+..++.+....|++..
T Consensus 148 -----~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~~ 219 (225)
T 2yhc_A 148 -----KYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTLE 219 (225)
T ss_dssp -----HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCCC
T ss_pred -----HHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCchh
Confidence 12235678899999999999999886 22343 246888999999999999999999999988887643
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.61 E-value=8.5e-07 Score=83.22 Aligned_cols=124 Identities=9% Similarity=-0.007 Sum_probs=93.6
Q ss_pred HHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhc
Q 036237 421 IGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESM-PM-RPNFVIWMSLLSGARNH 498 (689)
Q Consensus 421 ~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~ll~~~~~~ 498 (689)
..+...+...|++++|...|+... .|+...+..+...|.+.|++++|...+++. .. +.+...|..+...+...
T Consensus 10 ~~~g~~~~~~~~~~~A~~~~~~a~-----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~ 84 (213)
T 1hh8_A 10 WNEGVLAADKKDWKGALDAFSAVQ-----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQT 84 (213)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTSS-----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHc-----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHc
Confidence 334445556666666666665543 355666677777777777777777777664 12 23567888888888889
Q ss_pred CChHHHHHHHHHHhhcCCCCc----------------hhHHHHHHHHHhcCCcchHHHHHHHHHhCC
Q 036237 499 GNKDIGEYAANNLIKVAPDTI----------------GCYVVLSNIYAAAGQWDKVSEVREMMKKRG 549 (689)
Q Consensus 499 g~~~~a~~~~~~~~~~~p~~~----------------~~~~~L~~~~~~~g~~~~A~~~~~~m~~~~ 549 (689)
|++++|+..+++++++.|++. .++..++.+|.+.|++++|.+.+++..+..
T Consensus 85 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 151 (213)
T 1hh8_A 85 EKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 151 (213)
T ss_dssp TCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred ccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcC
Confidence 999999999999999888776 889999999999999999999999988643
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.57 E-value=1.2e-06 Score=82.06 Aligned_cols=184 Identities=11% Similarity=0.006 Sum_probs=111.8
Q ss_pred HHHHHHHHHcCChHHHHHHHHHhccCCCCcChhhHHHHHHHHHcccchhhHHHHHHHHHHhCCccchhHHhHHHhhHHhc
Q 036237 285 NSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKC 364 (689)
Q Consensus 285 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~ 364 (689)
-.....+...|++++|+..|++..+. .|+........ .... ...........+...|.+.
T Consensus 8 ~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~----~~~~--------------~~~~~~~~~~~lg~~~~~~ 67 (208)
T 3urz_A 8 LQKVSAAIEAGQNGQAVSYFRQTIAL--NIDRTEMYYWT----NVDK--------------NSEISSKLATELALAYKKN 67 (208)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--CHHHHHHHHHH----HSCT--------------TSHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHh----hhcc--------------hhhhhHHHHHHHHHHHHHC
Confidence 33445566777778887777777653 33322111000 0000 0011122334477778888
Q ss_pred CCHHHHHHHHHhcCC---CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCc--HHHHHH
Q 036237 365 GSIESALTVFRAISK---KKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPT-AITFIGVLNACSHAGL--VNDGRR 438 (689)
Q Consensus 365 g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~--~~~a~~ 438 (689)
|++++|...|++..+ .+...|..+...|...|++++|+..|++..+ +.|+ ..++..+..++...|. .+.+..
T Consensus 68 g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~lg~~~~~~~~~~~~~~~~ 145 (208)
T 3urz_A 68 RNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQ--LEADNLAANIFLGNYYYLTAEQEKKKLET 145 (208)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCCHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 888888888887654 4567888888888888888888888888887 4555 4567777776655543 344555
Q ss_pred HHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHHHHHHH
Q 036237 439 YFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESM-PMRPNFVIWMSLLS 493 (689)
Q Consensus 439 ~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~ll~ 493 (689)
.++... ...|....+..+...+...|++++|...|++. ...|+......+..
T Consensus 146 ~~~~~~---~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~l~~ 198 (208)
T 3urz_A 146 DYKKLS---SPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPSTEAQKTLDK 198 (208)
T ss_dssp HHC------CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCHHHHHHHHH
T ss_pred HHHHHh---CCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 555443 22222233444566677788888888888875 56787765555444
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.56 E-value=2.2e-06 Score=80.51 Aligned_cols=172 Identities=11% Similarity=-0.116 Sum_probs=126.6
Q ss_pred HHHHHHHHHHhCCccchhHHhHHHhhHHhcCCHHHHHHHHHhcCC-CChhhHHHHHHHHHHcC----CHHHHHHHHHHHH
Q 036237 335 GRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISK-KKVGHWTAMIVGLGMHG----MATQALDLFNKMC 409 (689)
Q Consensus 335 a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~g----~~~~A~~l~~~m~ 409 (689)
|.+.+....+.| ++..+..|..+|...+++++|.+.|++..+ .++..+..|...|.. + ++++|++.|++..
T Consensus 5 A~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~ 80 (212)
T 3rjv_A 5 PGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQGDGDALALLAQLKIR-NPQQADYPQARQLAEKAV 80 (212)
T ss_dssp TTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHH
Confidence 444555555543 556666777778778888888888887654 456677777777777 6 7888888888887
Q ss_pred HCCCCCCHHHHHHHHHHHhc----cCcHHHHHHHHHHhHHhcCCCCC---hhHHHHHHHHHHh----cCCHHHHHHHHHh
Q 036237 410 RMGMKPTAITFIGVLNACSH----AGLVNDGRRYFNMMINDYGIEPT---IEHYGCLVDILCR----TGYLEEAKSTIES 478 (689)
Q Consensus 410 ~~g~~p~~~t~~~ll~a~~~----~g~~~~a~~~~~~~~~~~~~~p~---~~~~~~li~~~~~----~g~~~~A~~~~~~ 478 (689)
+.| +...+..|...+.. .+++++|..+|++..+ ..|+ +..+..|..+|.. .+++++|...|++
T Consensus 81 ~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~---~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~ 154 (212)
T 3rjv_A 81 EAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAAR---DSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKG 154 (212)
T ss_dssp HTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTS---STTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHH
T ss_pred HCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHH---cCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHH
Confidence 755 55666677777776 7888999999888873 3343 6778888888888 7889999999888
Q ss_pred CC-CCCCHHHHHHHHHHHHhc-C-----ChHHHHHHHHHHhhcCC
Q 036237 479 MP-MRPNFVIWMSLLSGARNH-G-----NKDIGEYAANNLIKVAP 516 (689)
Q Consensus 479 ~~-~~p~~~~~~~ll~~~~~~-g-----~~~~a~~~~~~~~~~~p 516 (689)
.- ..++...+..|...|... | +.++|...++++.+..+
T Consensus 155 A~~~~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 155 SSSLSRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHHTSCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHHcCCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 63 224566777777777653 3 89999999999888754
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=98.56 E-value=6.5e-07 Score=88.65 Aligned_cols=162 Identities=8% Similarity=-0.134 Sum_probs=118.9
Q ss_pred ccchhHHhHHHhhHHhcCCHHHHHHHHHhcCC---CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHH-H
Q 036237 348 VVDGVLGTLLIQMYSKCGSIESALTVFRAISK---KKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIG-V 423 (689)
Q Consensus 348 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~-l 423 (689)
+.+......+...+...|++++|...|++... .+...+..+...|.+.|++++|+..+++... ..|+...... .
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~--~~p~~~~~~~~~ 191 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPL--QDQDTRYQGLVA 191 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCG--GGCSHHHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCch--hhcchHHHHHHH
Confidence 44555666677778888888888888887754 3566788888888888888888888888766 3565443222 2
Q ss_pred HHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC---HHHHHHHHHHHHhcC
Q 036237 424 LNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESM-PMRPN---FVIWMSLLSGARNHG 499 (689)
Q Consensus 424 l~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~---~~~~~~ll~~~~~~g 499 (689)
...+...+..++|...++..... -+.+...+..+...|...|++++|...+.++ ...|+ ...+..++..+...|
T Consensus 192 ~~~l~~~~~~~~a~~~l~~al~~--~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g 269 (287)
T 3qou_A 192 QIELLXQAADTPEIQQLQQQVAE--NPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALG 269 (287)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHC
T ss_pred HHHHHhhcccCccHHHHHHHHhc--CCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcC
Confidence 23355667777788888887742 2334678888888888999999998888876 23343 567888888888889
Q ss_pred ChHHHHHHHHHHhh
Q 036237 500 NKDIGEYAANNLIK 513 (689)
Q Consensus 500 ~~~~a~~~~~~~~~ 513 (689)
+.+.|...+++.+.
T Consensus 270 ~~~~a~~~~r~al~ 283 (287)
T 3qou_A 270 TGDALASXYRRQLY 283 (287)
T ss_dssp TTCHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHH
Confidence 98888888887654
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.56 E-value=5e-07 Score=78.83 Aligned_cols=99 Identities=8% Similarity=-0.003 Sum_probs=84.4
Q ss_pred CCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchhHHHH
Q 036237 449 IEPT-IEHYGCLVDILCRTGYLEEAKSTIESM-PMRP-NFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVL 525 (689)
Q Consensus 449 ~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L 525 (689)
+.|+ ...+..+...+.+.|++++|...|++. ...| +...|..+..++...|++++|+..++++++++|+++..+..+
T Consensus 13 ~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 92 (142)
T 2xcb_A 13 LSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHA 92 (142)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHH
Confidence 3443 455666778888889999999888876 2334 677899999999999999999999999999999999999999
Q ss_pred HHHHHhcCCcchHHHHHHHHHh
Q 036237 526 SNIYAAAGQWDKVSEVREMMKK 547 (689)
Q Consensus 526 ~~~~~~~g~~~~A~~~~~~m~~ 547 (689)
+.+|...|++++|...+++..+
T Consensus 93 g~~~~~~g~~~~A~~~~~~al~ 114 (142)
T 2xcb_A 93 AECHLQLGDLDGAESGFYSARA 114 (142)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHH
Confidence 9999999999999999998875
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.54 E-value=2e-06 Score=80.67 Aligned_cols=144 Identities=8% Similarity=-0.057 Sum_probs=82.5
Q ss_pred hHHHhhHHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHH
Q 036237 355 TLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVN 434 (689)
Q Consensus 355 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~ 434 (689)
..+...+...|++++|.+.|++...++...|..+...|...|++++|++.|++..+.. +.+...+..+..++...|+++
T Consensus 10 ~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~ 88 (213)
T 1hh8_A 10 WNEGVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEKYD 88 (213)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcccHH
Confidence 3445555566666666666666555555556666666666666666666666655531 122334555555555555555
Q ss_pred HHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHhh
Q 036237 435 DGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRP-NFVIWMSLLSGARNHGNKDIGEYAANNLIK 513 (689)
Q Consensus 435 ~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 513 (689)
+|...|+...+. .|+..... +...| +...| ....|..+..++...|+++.|...++++++
T Consensus 89 ~A~~~~~~al~~---~~~~~~~~-----~~~~~-----------~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 149 (213)
T 1hh8_A 89 LAIKDLKEALIQ---LRGNQLID-----YKILG-----------LQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATS 149 (213)
T ss_dssp HHHHHHHHHHHT---TTTCSEEE-----CGGGT-----------BCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHh---CCCccHHH-----HHHhc-----------cccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 555555555531 11100000 00000 01223 235788888899999999999999999999
Q ss_pred cCCCC
Q 036237 514 VAPDT 518 (689)
Q Consensus 514 ~~p~~ 518 (689)
+.|++
T Consensus 150 ~~p~~ 154 (213)
T 1hh8_A 150 MKSEP 154 (213)
T ss_dssp TCCSG
T ss_pred cCccc
Confidence 99975
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.52 E-value=1.5e-06 Score=73.01 Aligned_cols=113 Identities=16% Similarity=0.167 Sum_probs=78.2
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHH
Q 036237 419 TFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMP--MRPNFVIWMSLLSGAR 496 (689)
Q Consensus 419 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~ll~~~~ 496 (689)
.+..+...+...|++++|..+++.+.+. .+.+...+..+...|.+.|++++|...++++- .+.+..+|..+...+.
T Consensus 11 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 88 (125)
T 1na0_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALEL--DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYY 88 (125)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH
Confidence 4455555555666666666666665532 12234556666666677777777776666641 2235677888888888
Q ss_pred hcCChHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcC
Q 036237 497 NHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAG 533 (689)
Q Consensus 497 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~~~~~g 533 (689)
..|+++.|...++++++..|+++..+..++.++...|
T Consensus 89 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 89 KQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred HhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence 9999999999999999999998888888888776544
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.52 E-value=2.1e-07 Score=91.93 Aligned_cols=189 Identities=8% Similarity=-0.100 Sum_probs=124.1
Q ss_pred hhHHhHHHhhHHhcCCHHHHHHHHHhcCC---CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHH
Q 036237 351 GVLGTLLIQMYSKCGSIESALTVFRAISK---KKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPT-AITFIGVLNA 426 (689)
Q Consensus 351 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a 426 (689)
...+..+...|.+.|++++|...|++... .+...|..+...|.+.|++++|+..+++..+ +.|+ ...+..+..+
T Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~lg~~ 81 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALE--LDGQSVKAHFFLGQC 81 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTT--SCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--hCCCCHHHHHHHHHH
Confidence 34555666777778888888888876653 3567788888888888888888888888876 3454 4567777788
Q ss_pred HhccCcHHHHHHHHHHhHHhcCCCCCh-hHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHH
Q 036237 427 CSHAGLVNDGRRYFNMMINDYGIEPTI-EHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGE 505 (689)
Q Consensus 427 ~~~~g~~~~a~~~~~~~~~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~ 505 (689)
+...|++++|...|+...+. .|+. ..+...+....+.++...... .......++......+ ..+ ..|+.+.|.
T Consensus 82 ~~~~g~~~~A~~~~~~al~l---~p~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~l-~~l-~~~~~~~A~ 155 (281)
T 2c2l_A 82 QLEMESYDEAIANLQRAYSL---AKEQRLNFGDDIPSALRIAKKKRWNS-IEERRIHQESELHSYL-TRL-IAAEREREL 155 (281)
T ss_dssp HHHTTCHHHHHHHHHHHHHH---HHHTTCCCCSHHHHHHHHHHHHHHHH-HHHTCCCCCCHHHHHH-HHH-HHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHh---CccchhhHHHHHHHHHHHHHHHHHHH-HHHHHHhhhHHHHHHH-HHH-HHHHHHHHH
Confidence 88888888888888877632 2221 111112222222111111111 2222333344443333 222 368899999
Q ss_pred HHHHHHhhcCCCCchhHHHHHHHHHhc-CCcchHHHHHHHHHh
Q 036237 506 YAANNLIKVAPDTIGCYVVLSNIYAAA-GQWDKVSEVREMMKK 547 (689)
Q Consensus 506 ~~~~~~~~~~p~~~~~~~~L~~~~~~~-g~~~~A~~~~~~m~~ 547 (689)
..++++++++|++......+...+.+. +++++|.++|.++.+
T Consensus 156 ~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~ 198 (281)
T 2c2l_A 156 EECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDE 198 (281)
T ss_dssp TTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 999999999998877777777777776 778999999988765
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.51 E-value=1.4e-06 Score=77.70 Aligned_cols=125 Identities=10% Similarity=0.045 Sum_probs=86.7
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHh
Q 036237 420 FIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESM-PM-RPNFVIWMSLLSGARN 497 (689)
Q Consensus 420 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~ll~~~~~ 497 (689)
+..+...+...|++++|...|+..... .+.+...+..+...|...|++++|...+++. .. +.+...|..+...+..
T Consensus 16 ~~~~a~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~ 93 (166)
T 1a17_A 16 LKTQANDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMA 93 (166)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence 444444555556666666666555531 1223555666666666667777776666654 12 2356788888888999
Q ss_pred cCChHHHHHHHHHHhhcCCCCchhHHHHHH--HHHhcCCcchHHHHHHHHH
Q 036237 498 HGNKDIGEYAANNLIKVAPDTIGCYVVLSN--IYAAAGQWDKVSEVREMMK 546 (689)
Q Consensus 498 ~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~--~~~~~g~~~~A~~~~~~m~ 546 (689)
.|++++|...+++++++.|+++..+..+.. .+...|++++|.+.++...
T Consensus 94 ~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 144 (166)
T 1a17_A 94 LGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKR 144 (166)
T ss_dssp TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence 999999999999999999998877754444 4888899999999988764
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=98.50 E-value=5.2e-05 Score=80.87 Aligned_cols=335 Identities=11% Similarity=-0.014 Sum_probs=162.1
Q ss_pred CCHHHHHHHHhcccC-CCChhhHHHHHHHHHhCCC-chHHHHHHHHhHhC-CCCC-CcccHHHHHHHHH----hcCChHH
Q 036237 69 NNLHYARSIFDRILQ-HPSLVLYNLLIKCYVFNQR-SHEALTLFCDLLDR-FLLP-DNFTLPCVIKGAA----RLGAIKE 140 (689)
Q Consensus 69 g~~~~A~~~f~~~~~-~~~~~~~~~ll~~~~~~g~-~~~a~~~~~~m~~~-g~~p-~~~t~~~ll~~~~----~~~~~~~ 140 (689)
|+.+.+..+|++... .|++..|...+.-..+.+. .+....+|+..... |..| +...|...+..+. ..++++.
T Consensus 28 ~~~e~~~~iferal~~~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~ 107 (493)
T 2uy1_A 28 KDYRSLESLFGRCLKKSYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEK 107 (493)
T ss_dssp TCHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHH
T ss_pred CCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHH
Confidence 678888889888764 5788888888877766653 35566777776653 4333 4445555555433 2356778
Q ss_pred HHHHHHHHHHhCCCCchhHHHHHHHHHHh-------------cCChHHHHHHHhhCCC----CCeehHHHHHHHHHhCC-
Q 036237 141 GKQIHGLVFKLGFGFDKFVLSSLVSMYAK-------------FGEIDLGRRVFDAMDD----KDLVSWNCLIDGYVKKG- 202 (689)
Q Consensus 141 a~~~~~~~~~~g~~~~~~~~~~li~~~~~-------------~g~~~~A~~~~~~m~~----~~~~~~~~li~~~~~~g- 202 (689)
++.+|++++......-...|......-.. .+.+..|+.+++.+.. .+...|...+.--..++
T Consensus 108 vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~ 187 (493)
T 2uy1_A 108 IRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGM 187 (493)
T ss_dssp HHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTT
T ss_pred HHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCc
Confidence 88888888874221111222222211100 0122223333322211 12334555444322221
Q ss_pred -C-----hHHHHHHHhhCCC--C-CcchHHHHHHHHHhCCChHHHHHHHhhcCcCCcchHHHHHHHHHhcCCHHHH-HHH
Q 036237 203 -E-----VEVAMKLFDEMPD--R-DLFSWTCLVDGFSKCGKVEIAREIFYRMPNRNLVSWNAMINGYMKAGDVDSA-CEL 272 (689)
Q Consensus 203 -~-----~~~A~~~~~~m~~--~-d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A-~~~ 272 (689)
- .+.+..+|+++.. | +...|...+.-+.+.|+.+.|..+|++.... +.... +--.|+...+.++. ..+
T Consensus 188 ~~~~~~~~~Rv~~~ye~al~~~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~~-l~~~y~~~~e~~~~~~~l 265 (493)
T 2uy1_A 188 KLGGRPHESRMHFIHNYILDSFYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDGMF-LSLYYGLVMDEEAVYGDL 265 (493)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSSH-HHHHHHHHTTCTHHHHHH
T ss_pred cCcchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcHH-HHHHHHhhcchhHHHHHH
Confidence 0 2234455655543 2 3445666666666677777777777766543 22111 11122222111111 111
Q ss_pred HHhcC------------CCChHHHHHHHHHHHHcCChHHHHHHHHHhccCCCCcChhhHHHHHHHHHc-ccchhhHHHHH
Q 036237 273 FDDME------------IRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAG-LAVLNKGRWMH 339 (689)
Q Consensus 273 ~~~~~------------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~-~~~~~~a~~i~ 339 (689)
.+... ......|-..+....+.+..+.|..+|.+. .. ...+...|......-.. .++.+.|..++
T Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~-~~~~~~v~i~~A~lE~~~~~d~~~ar~if 343 (493)
T 2uy1_A 266 KRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GN-EGVGPHVFIYCAFIEYYATGSRATPYNIF 343 (493)
T ss_dssp HHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TT-SCCCHHHHHHHHHHHHHHHCCSHHHHHHH
T ss_pred HHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hC-CCCChHHHHHHHHHHHHHCCChHHHHHHH
Confidence 11110 001234555555555556666666666666 21 11122222211111111 12466666666
Q ss_pred HHHHHhCCccchhHHhHHHhhHHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHH
Q 036237 340 SYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMC 409 (689)
Q Consensus 340 ~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 409 (689)
+..++.- +.++..+...++...+.|+.+.|+.+|+++. +....|...+..-...|+.+.+.++++++.
T Consensus 344 e~al~~~-~~~~~~~~~yid~e~~~~~~~~aR~l~er~~-k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~ 411 (493)
T 2uy1_A 344 SSGLLKH-PDSTLLKEEFFLFLLRIGDEENARALFKRLE-KTSRMWDSMIEYEFMVGSMELFRELVDQKM 411 (493)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHSC-CBHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 6666543 2233344445555566666666666666653 234455555555555566555555555544
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.50 E-value=5.5e-07 Score=90.18 Aligned_cols=197 Identities=8% Similarity=-0.093 Sum_probs=149.9
Q ss_pred cccchhhHHHHHHHHHHhCCccchhHHhHHHhhHHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHH
Q 036237 328 GLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNK 407 (689)
Q Consensus 328 ~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~ 407 (689)
..|++++|.+++....+.... . .+...+++++|...|.+. +..|...|++++|+..|.+
T Consensus 3 ~~~~~~eA~~~~~~a~k~~~~-~---------~~~~~~~~~~A~~~~~~a-----------~~~~~~~g~~~~A~~~~~~ 61 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYLKT-S---------FMKWKPDYDSAASEYAKA-----------AVAFKNAKQLEQAKDAYLQ 61 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHHCC-C---------SSSCSCCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHccc-c---------ccCCCCCHHHHHHHHHHH-----------HHHHHHcCCHHHHHHHHHH
Confidence 357788898888887764321 0 122258899999887754 5678899999999999998
Q ss_pred HHHC----CCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCC--CCC--hhHHHHHHHHHHhcCCHHHHHHHHHh
Q 036237 408 MCRM----GMKPT-AITFIGVLNACSHAGLVNDGRRYFNMMINDYGI--EPT--IEHYGCLVDILCRTGYLEEAKSTIES 478 (689)
Q Consensus 408 m~~~----g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~--~p~--~~~~~~li~~~~~~g~~~~A~~~~~~ 478 (689)
..+. |-.+. ..+|..+...|...|++++|+..|++...-+.- .|. ..++..+..+|.+ |++++|+..+++
T Consensus 62 al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~ 140 (307)
T 2ifu_A 62 EAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQ 140 (307)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHH
Confidence 7653 21111 347888889999999999999999987643211 111 4678889999999 999999999987
Q ss_pred CC-CC---CC----HHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCc------hhHHHHHHHHHhcCCcchHHHHHHH
Q 036237 479 MP-MR---PN----FVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTI------GCYVVLSNIYAAAGQWDKVSEVREM 544 (689)
Q Consensus 479 ~~-~~---p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~------~~~~~L~~~~~~~g~~~~A~~~~~~ 544 (689)
.- +. .+ ..++..+...+...|++++|+..+++++++.|++. ..+..++.++...|++++|...+++
T Consensus 141 Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~ 220 (307)
T 2ifu_A 141 AAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRE 220 (307)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 61 11 11 45788899999999999999999999999766543 3677788888999999999999998
Q ss_pred HH
Q 036237 545 MK 546 (689)
Q Consensus 545 m~ 546 (689)
..
T Consensus 221 al 222 (307)
T 2ifu_A 221 SY 222 (307)
T ss_dssp HT
T ss_pred Hh
Confidence 77
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=98.50 E-value=1.8e-05 Score=78.24 Aligned_cols=179 Identities=12% Similarity=0.099 Sum_probs=106.0
Q ss_pred CHHHHHHHHHhcCC---CChhhHHHHHHHH----HHc---CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHH-
Q 036237 366 SIESALTVFRAISK---KKVGHWTAMIVGL----GMH---GMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVN- 434 (689)
Q Consensus 366 ~~~~A~~~~~~~~~---~~~~~~~~li~~~----~~~---g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~- 434 (689)
+++++++.++.+.. ++..+|+.-...+ ... +++++++++++++.+.. +-|...|..-...+.+.|.++
T Consensus 84 ~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~ 162 (306)
T 3dra_A 84 NLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHND 162 (306)
T ss_dssp CHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTC
T ss_pred cHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccCh
Confidence 55555555555443 2334455443333 333 56667777777666632 223445555555555556655
Q ss_pred -HHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCC------HHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCChH-HH
Q 036237 435 -DGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGY------LEEAKSTIESM-PMR-PNFVIWMSLLSGARNHGNKD-IG 504 (689)
Q Consensus 435 -~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~------~~~A~~~~~~~-~~~-p~~~~~~~ll~~~~~~g~~~-~a 504 (689)
+++++++.+.+. -.-+...|+.-..++.+.|+ ++++++.++++ ... -|...|+-+...+.+.|+.. ..
T Consensus 163 ~~EL~~~~~~i~~--d~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~ 240 (306)
T 3dra_A 163 AKELSFVDKVIDT--DLKNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQL 240 (306)
T ss_dssp HHHHHHHHHHHHH--CTTCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGG
T ss_pred HHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHH
Confidence 666666666632 22334555555555555555 66777776654 222 36667777777777666633 34
Q ss_pred HHHHHHHhhcC---CCCchhHHHHHHHHHhcCCcchHHHHHHHHHh
Q 036237 505 EYAANNLIKVA---PDTIGCYVVLSNIYAAAGQWDKVSEVREMMKK 547 (689)
Q Consensus 505 ~~~~~~~~~~~---p~~~~~~~~L~~~~~~~g~~~~A~~~~~~m~~ 547 (689)
..+++++++++ |.++.++..|+.+|.+.|+.++|.++++.+.+
T Consensus 241 ~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~ 286 (306)
T 3dra_A 241 EEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLKS 286 (306)
T ss_dssp HHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Confidence 55666666655 66777777788888877888888888877764
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.49 E-value=1.5e-06 Score=73.82 Aligned_cols=116 Identities=7% Similarity=-0.073 Sum_probs=83.1
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHH
Q 036237 419 TFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESM-PMR-PNFVIWMSLLSGAR 496 (689)
Q Consensus 419 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~ll~~~~ 496 (689)
.+..+...+...|++++|...|+..... .+.+...+..+...|...|++++|...+++. ... .+...|..+...+.
T Consensus 14 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (131)
T 2vyi_A 14 RLKTEGNEQMKVENFEAAVHFYGKAIEL--NPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLALS 91 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHHH
Confidence 4455555566666666666666666532 1224556666667777777777777776664 122 35667888888899
Q ss_pred hcCChHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCcc
Q 036237 497 NHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWD 536 (689)
Q Consensus 497 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~~~~~g~~~ 536 (689)
..|+++.|...++++++..|+++..+..++.++...|+++
T Consensus 92 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~ 131 (131)
T 2vyi_A 92 SLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREAP 131 (131)
T ss_dssp HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTCC
T ss_pred HhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcCC
Confidence 9999999999999999999999999999999998888763
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.47 E-value=2.1e-05 Score=77.88 Aligned_cols=157 Identities=10% Similarity=-0.047 Sum_probs=121.0
Q ss_pred HHhhHHhcCCHHHHHHHHHhcCCCC---h------hhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC-CC----HHHHHH
Q 036237 357 LIQMYSKCGSIESALTVFRAISKKK---V------GHWTAMIVGLGMHGMATQALDLFNKMCRMGMK-PT----AITFIG 422 (689)
Q Consensus 357 li~~~~~~g~~~~A~~~~~~~~~~~---~------~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~-p~----~~t~~~ 422 (689)
.+..+...|++++|.+.+++..... . ..+..+...+...|++++|+..|++....... ++ ..+++.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 4677888999999999999876521 1 13334677777788999999999999884322 23 226888
Q ss_pred HHHHHhccCcHHHHHHHHHHhHHhc----CCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhC-------CCCCC-HHHHH
Q 036237 423 VLNACSHAGLVNDGRRYFNMMINDY----GIEPT-IEHYGCLVDILCRTGYLEEAKSTIESM-------PMRPN-FVIWM 489 (689)
Q Consensus 423 ll~a~~~~g~~~~a~~~~~~~~~~~----~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~-------~~~p~-~~~~~ 489 (689)
+...|...|++++|..+|+.+.+.. +..+. ..+|..+...|.+.|++++|...+++. ...+. ..+|.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 9999999999999999999987422 11222 357889999999999999999998875 12222 56889
Q ss_pred HHHHHHHhcCC-hHHHHHHHHHHhh
Q 036237 490 SLLSGARNHGN-KDIGEYAANNLIK 513 (689)
Q Consensus 490 ~ll~~~~~~g~-~~~a~~~~~~~~~ 513 (689)
.+...+...|+ +++|...++++++
T Consensus 241 ~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 241 QRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 99999999995 5999999999876
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.47 E-value=1.5e-06 Score=74.10 Aligned_cols=113 Identities=8% Similarity=-0.017 Sum_probs=74.5
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHH
Q 036237 419 TFIGVLNACSHAGLVNDGRRYFNMMINDYGIEP-TIEHYGCLVDILCRTGYLEEAKSTIESM-PM-RPNFVIWMSLLSGA 495 (689)
Q Consensus 419 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~ll~~~ 495 (689)
.+..+...+...|++++|...|+...+ ..| +...+..+...|...|++++|...+++. .. +.+...|..+...+
T Consensus 18 ~~~~~~~~~~~~~~~~~A~~~~~~al~---~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~ 94 (133)
T 2lni_A 18 MVKNKGNECFQKGDYPQAMKHYTEAIK---RNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAAL 94 (133)
T ss_dssp HHHHHHHHHHHTTCSHHHHHHHHHHHT---TCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH---cCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHH
Confidence 444444555555555555555555542 222 3455555556666666666666666554 11 23566788888888
Q ss_pred HhcCChHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCC
Q 036237 496 RNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQ 534 (689)
Q Consensus 496 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~~~~~g~ 534 (689)
...|++++|+..+++++++.|.+...+..++.++...|+
T Consensus 95 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 95 EAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp HHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred HHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence 888999999999999999999888888888888877654
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.44 E-value=9.1e-07 Score=89.76 Aligned_cols=94 Identities=6% Similarity=-0.073 Sum_probs=79.9
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchhHHHHHHHHH
Q 036237 453 IEHYGCLVDILCRTGYLEEAKSTIESM-PMRP-NFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYA 530 (689)
Q Consensus 453 ~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~~~ 530 (689)
...|..+..+|.+.|++++|...++++ ...| +...|..+..++...|++++|+..++++++++|+++.++..++.++.
T Consensus 196 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~ 275 (336)
T 1p5q_A 196 LASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQ 275 (336)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence 356777888888888888888888776 2333 67789999999999999999999999999999999999999999999
Q ss_pred hcCCcchH-HHHHHHHH
Q 036237 531 AAGQWDKV-SEVREMMK 546 (689)
Q Consensus 531 ~~g~~~~A-~~~~~~m~ 546 (689)
+.|++++| ..+++.|.
T Consensus 276 ~~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 276 RIRRQLAREKKLYANMF 292 (336)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999998 45666664
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.44 E-value=5e-07 Score=87.25 Aligned_cols=181 Identities=10% Similarity=-0.003 Sum_probs=131.3
Q ss_pred hcCCHHHHHHHHHhcCC---CChhhHHHH-------HHHHHHcCCHHHHHHHHHHHHHCCCCCCHH--------------
Q 036237 363 KCGSIESALTVFRAISK---KKVGHWTAM-------IVGLGMHGMATQALDLFNKMCRMGMKPTAI-------------- 418 (689)
Q Consensus 363 ~~g~~~~A~~~~~~~~~---~~~~~~~~l-------i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-------------- 418 (689)
..++.+.|.+.|.++.. .....|+.+ ...+...++..+++..+..-.. +.|+..
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a~~~~~g~y~~~~ 95 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNARIAIGGLYGDIT 95 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCCEEECCTTTCCCE
T ss_pred cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhhhhccCCcccccc
Confidence 46888888888888765 345578777 4556666666666665555443 344322
Q ss_pred --------HHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCH----H
Q 036237 419 --------TFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNF----V 486 (689)
Q Consensus 419 --------t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~----~ 486 (689)
....+...+...|++++|.+.|+.+.. ..|+......+...+.+.|++++|+..|+.....|+. .
T Consensus 96 ~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~---~~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~ 172 (282)
T 4f3v_A 96 YPVTSPLAITMGFAACEAAQGNYADAMEALEAAPV---AGSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGA 172 (282)
T ss_dssp EECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCC---TTCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHH
T ss_pred cccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHH
Confidence 123355667788999999999988763 3455436666777889999999999999876433433 3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHhhcC--CC-CchhHHHHHHHHHhcCCcchHHHHHHHHHhC
Q 036237 487 IWMSLLSGARNHGNKDIGEYAANNLIKVA--PD-TIGCYVVLSNIYAAAGQWDKVSEVREMMKKR 548 (689)
Q Consensus 487 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~--p~-~~~~~~~L~~~~~~~g~~~~A~~~~~~m~~~ 548 (689)
.+..+..++...|++++|+..++++.... |. .+.....++.++.+.|+.++|..+|+++...
T Consensus 173 a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~ 237 (282)
T 4f3v_A 173 AGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT 237 (282)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 67788888999999999999999987633 54 4457788899999999999999999998763
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=98.42 E-value=6.6e-05 Score=74.11 Aligned_cols=222 Identities=9% Similarity=-0.014 Sum_probs=150.1
Q ss_pred HHHHHHHHHhccCCCCcChhh-HHHHHHHHHccc--chhhHHHHHHHHHHhCCccchhHHhHHHhhH----Hhc---CCH
Q 036237 298 MEALELLETMLIGDVLPNDAT-LVSALSAVAGLA--VLNKGRWMHSYIVKNGFVVDGVLGTLLIQMY----SKC---GSI 367 (689)
Q Consensus 298 ~~A~~~~~~m~~~g~~p~~~t-~~~ll~a~~~~~--~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~----~~~---g~~ 367 (689)
++|++++..++. +.|+..| ++.--..+...+ .++++...++.++.... .+..+++.-...+ .+. +++
T Consensus 50 ~~aL~~t~~~L~--~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nP-k~y~aW~~R~~iL~~~~~~l~~~~~~ 126 (306)
T 3dra_A 50 ERALHITELGIN--ELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNE-KNYQIWNYRQLIIGQIMELNNNDFDP 126 (306)
T ss_dssp HHHHHHHHHHHH--HCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCT-TCCHHHHHHHHHHHHHHHHTTTCCCT
T ss_pred HHHHHHHHHHHH--HCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCc-ccHHHHHHHHHHHHHHHHhccccCCH
Confidence 455555555554 2333333 233333334444 55555555555555432 2233333322222 333 678
Q ss_pred HHHHHHHHhcCC---CChhhHHHHHHHHHHcCCHH--HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCc------HHHH
Q 036237 368 ESALTVFRAISK---KKVGHWTAMIVGLGMHGMAT--QALDLFNKMCRMGMKPTAITFIGVLNACSHAGL------VNDG 436 (689)
Q Consensus 368 ~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~--~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~------~~~a 436 (689)
+++.+.++.+.+ ++..+|+--.-.+.+.|.++ ++++.++++.+.. .-|...|+.-...+.+.+. ++++
T Consensus 127 ~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d-~~N~sAW~~R~~ll~~l~~~~~~~~~~eE 205 (306)
T 3dra_A 127 YREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD-LKNNSAWSHRFFLLFSKKHLATDNTIDEE 205 (306)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHSSGGGCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccchhhhHHHH
Confidence 888888888765 56778888888888889888 9999999999854 2345567666666666666 8999
Q ss_pred HHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHH-HHHHHHhCC-C----CCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 036237 437 RRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEE-AKSTIESMP-M----RPNFVIWMSLLSGARNHGNKDIGEYAANN 510 (689)
Q Consensus 437 ~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~-A~~~~~~~~-~----~p~~~~~~~ll~~~~~~g~~~~a~~~~~~ 510 (689)
++.++.++. --+-|...|+.+..++.+.|+..+ +..+..+.- . ..+...+..+...+.+.|+.++|.++++.
T Consensus 206 l~~~~~aI~--~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~ 283 (306)
T 3dra_A 206 LNYVKDKIV--KCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDL 283 (306)
T ss_dssp HHHHHHHHH--HCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHH--hCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHH
Confidence 999999884 234457889999999999998544 556776652 1 24778899999999999999999999999
Q ss_pred Hhh-cCCCCchhHHHH
Q 036237 511 LIK-VAPDTIGCYVVL 525 (689)
Q Consensus 511 ~~~-~~p~~~~~~~~L 525 (689)
+.+ .+|.....+...
T Consensus 284 l~~~~Dpir~~yW~~~ 299 (306)
T 3dra_A 284 LKSKYNPIRSNFWDYQ 299 (306)
T ss_dssp HHHTTCGGGHHHHHHH
T ss_pred HHhccChHHHHHHHHH
Confidence 997 899776555443
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.37 E-value=2.8e-06 Score=72.12 Aligned_cols=94 Identities=11% Similarity=0.032 Sum_probs=77.2
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchhHHHHHHHHHh
Q 036237 454 EHYGCLVDILCRTGYLEEAKSTIESM-PMRP-NFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAA 531 (689)
Q Consensus 454 ~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~~~~ 531 (689)
..+..+...+.+.|++++|...|++. ...| +...|..+..++...|++++|+..++++++++|+++..+..++.+|..
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 84 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIA 84 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 45566677777888888888887765 2233 677888888888999999999999999999999998899999999999
Q ss_pred cCCcchHHHHHHHHHh
Q 036237 532 AGQWDKVSEVREMMKK 547 (689)
Q Consensus 532 ~g~~~~A~~~~~~m~~ 547 (689)
.|++++|...+++..+
T Consensus 85 ~~~~~~A~~~~~~al~ 100 (126)
T 3upv_A 85 VKEYASALETLDAART 100 (126)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred HhCHHHHHHHHHHHHH
Confidence 9999999999888765
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.37 E-value=9.4e-07 Score=85.36 Aligned_cols=136 Identities=10% Similarity=-0.069 Sum_probs=99.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC--hhHHHHHHHH
Q 036237 385 WTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPT--IEHYGCLVDI 462 (689)
Q Consensus 385 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~li~~ 462 (689)
+-.....+...|++++|.++|+.+... .|+......+...+.+.+++++|+..|+..... . .|. ...+..+..+
T Consensus 105 ~LayA~~L~~~g~y~eA~~~l~~~~~~--~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~-~-d~~~~~~a~~~LG~a 180 (282)
T 4f3v_A 105 TMGFAACEAAQGNYADAMEALEAAPVA--GSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKW-P-DKFLAGAAGVAHGVA 180 (282)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHTSSCCT--TCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGC-S-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHcCCHHHHHHHHHHhhcc-C-CcccHHHHHHHHHHH
Confidence 344566777888888888888887763 455545445555778888899998888755421 1 121 2367778888
Q ss_pred HHhcCCHHHHHHHHHhCC---CCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchhHHHH
Q 036237 463 LCRTGYLEEAKSTIESMP---MRPN--FVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVL 525 (689)
Q Consensus 463 ~~~~g~~~~A~~~~~~~~---~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L 525 (689)
+.+.|++++|+..|++.. ..|. ...+..+..++...|+.++|...|+++...+|+ +.+...|
T Consensus 181 l~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL 247 (282)
T 4f3v_A 181 AANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAAAL 247 (282)
T ss_dssp HHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHH
Confidence 999999999999998872 2143 346778888899999999999999999999997 6555444
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.37 E-value=1.2e-06 Score=79.48 Aligned_cols=119 Identities=8% Similarity=0.048 Sum_probs=83.9
Q ss_pred ccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHH-HHhcCCh--HH
Q 036237 429 HAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESM-PMR-PNFVIWMSLLSG-ARNHGNK--DI 503 (689)
Q Consensus 429 ~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~ll~~-~~~~g~~--~~ 503 (689)
..|++++|...++..... .+.+...+..+...|...|++++|...++++ ... .+...|..+... +...|++ +.
T Consensus 22 ~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~ 99 (177)
T 2e2e_A 22 SQQNPEAQLQALQDKIRA--NPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQ 99 (177)
T ss_dssp -----CCCCHHHHHHHHH--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHH
T ss_pred hccCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHH
Confidence 455666666666666532 1234566667777777777777777777665 122 356677777777 6778887 88
Q ss_pred HHHHHHHHhhcCCCCchhHHHHHHHHHhcCCcchHHHHHHHHHhCC
Q 036237 504 GEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRG 549 (689)
Q Consensus 504 a~~~~~~~~~~~p~~~~~~~~L~~~~~~~g~~~~A~~~~~~m~~~~ 549 (689)
|+..++++++.+|+++..+..++.+|...|++++|...+++..+..
T Consensus 100 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 145 (177)
T 2e2e_A 100 TRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLN 145 (177)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC
Confidence 8899999988889888888889999999999999999888887643
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.35 E-value=1e-05 Score=80.17 Aligned_cols=161 Identities=9% Similarity=-0.068 Sum_probs=119.8
Q ss_pred HHhHHHhhHHhcCCHHHHHHHHHhcCC--C-Ch------hhHHHHHHHHHHcCCHHHHHHHHHHHHHCCC---CCC--HH
Q 036237 353 LGTLLIQMYSKCGSIESALTVFRAISK--K-KV------GHWTAMIVGLGMHGMATQALDLFNKMCRMGM---KPT--AI 418 (689)
Q Consensus 353 ~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~------~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~---~p~--~~ 418 (689)
.+...+..+...|++++|.+.+....+ + .. ..+..+...+...|++++|+..|++...... .+. ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 334466778889999999988876543 1 11 2344566677888999999999999875321 122 34
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC-----hhHHHHHHHHHHhcCCHHHHHHHHHhCC-------CCC-CH
Q 036237 419 TFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPT-----IEHYGCLVDILCRTGYLEEAKSTIESMP-------MRP-NF 485 (689)
Q Consensus 419 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-----~~~~~~li~~~~~~g~~~~A~~~~~~~~-------~~p-~~ 485 (689)
+++.+...|...|++++|..+|+++.......|+ ..++..+...|.+.|++++|...+++.- ... -.
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 7888889999999999999999988732222222 2588899999999999999999998751 111 15
Q ss_pred HHHHHHHHHHHhcCChHHH-HHHHHHHhh
Q 036237 486 VIWMSLLSGARNHGNKDIG-EYAANNLIK 513 (689)
Q Consensus 486 ~~~~~ll~~~~~~g~~~~a-~~~~~~~~~ 513 (689)
.+|..+...+...|+.+.| ...+++++.
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 6888999999999999999 777888776
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.34 E-value=3.3e-06 Score=69.40 Aligned_cols=97 Identities=13% Similarity=0.060 Sum_probs=78.7
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCC--CchhHHHHHHH
Q 036237 453 IEHYGCLVDILCRTGYLEEAKSTIESM-PM-RPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPD--TIGCYVVLSNI 528 (689)
Q Consensus 453 ~~~~~~li~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~--~~~~~~~L~~~ 528 (689)
...+..+...+.+.|++++|...+++. .. +.+...|..+...+...|++++|+..++++++..|+ ++..+..++.+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~ 85 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADA 85 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHH
Confidence 455666777777788888888777765 22 235678888888888999999999999999999998 88899999999
Q ss_pred HHhc-CCcchHHHHHHHHHhCC
Q 036237 529 YAAA-GQWDKVSEVREMMKKRG 549 (689)
Q Consensus 529 ~~~~-g~~~~A~~~~~~m~~~~ 549 (689)
|... |++++|.+.+++..+..
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~~ 107 (112)
T 2kck_A 86 LRYIEGKEVEAEIAEARAKLEH 107 (112)
T ss_dssp HTTCSSCSHHHHHHHHHHGGGC
T ss_pred HHHHhCCHHHHHHHHHHHhhcc
Confidence 9999 99999999998887644
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.32 E-value=1.7e-06 Score=76.06 Aligned_cols=103 Identities=9% Similarity=-0.098 Sum_probs=75.7
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHH
Q 036237 419 TFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESM-PMRP-NFVIWMSLLSGAR 496 (689)
Q Consensus 419 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~ 496 (689)
.+..+...+...|++++|...|+.+... -+.+...|..+..+|.+.|++++|...+++. ...| +...|..+..++.
T Consensus 23 ~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~ 100 (148)
T 2vgx_A 23 QLYSLAFNQYQSGXYEDAHXVFQALCVL--DHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLL 100 (148)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHc--CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHH
Confidence 4555666677777777777777777632 1224666777777777888888888777775 2233 5677888888999
Q ss_pred hcCChHHHHHHHHHHhhcCCCCchhHH
Q 036237 497 NHGNKDIGEYAANNLIKVAPDTIGCYV 523 (689)
Q Consensus 497 ~~g~~~~a~~~~~~~~~~~p~~~~~~~ 523 (689)
..|++++|+..+++++++.|+++....
T Consensus 101 ~~g~~~~A~~~~~~al~~~p~~~~~~~ 127 (148)
T 2vgx_A 101 QXGELAEAESGLFLAQELIANXPEFXE 127 (148)
T ss_dssp HTTCHHHHHHHHHHHHHHHTTCGGGHH
T ss_pred HcCCHHHHHHHHHHHHHHCcCCCcchH
Confidence 999999999999999999998776543
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.31 E-value=2e-06 Score=72.52 Aligned_cols=94 Identities=14% Similarity=0.034 Sum_probs=81.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchhHHHHHHHHHhc
Q 036237 455 HYGCLVDILCRTGYLEEAKSTIESM-PMRP-NFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAA 532 (689)
Q Consensus 455 ~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~~~~~ 532 (689)
.+..+...+.+.|++++|...+++. ...| +...|..+..++...|++++|+..++++++++|+++.++..|+.+|...
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE 98 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 4556777888889999999888876 2334 6778999999999999999999999999999999999999999999999
Q ss_pred CCcchHHHHHHHHHhC
Q 036237 533 GQWDKVSEVREMMKKR 548 (689)
Q Consensus 533 g~~~~A~~~~~~m~~~ 548 (689)
|++++|...+++..+.
T Consensus 99 g~~~~A~~~~~~al~~ 114 (121)
T 1hxi_A 99 HNANAALASLRAWLLS 114 (121)
T ss_dssp HHHHHHHHHHHHHHC-
T ss_pred CCHHHHHHHHHHHHHh
Confidence 9999999999988753
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.31 E-value=2.4e-06 Score=75.16 Aligned_cols=98 Identities=7% Similarity=0.027 Sum_probs=67.1
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHH
Q 036237 419 TFIGVLNACSHAGLVNDGRRYFNMMINDYGIEP-TIEHYGCLVDILCRTGYLEEAKSTIESM-PMRP-NFVIWMSLLSGA 495 (689)
Q Consensus 419 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~ 495 (689)
.+..+...+.+.|++++|...|+.+.. +.| +...|..+..+|.+.|++++|...|+++ ...| ++..|..+..++
T Consensus 38 ~~~~lg~~~~~~g~~~eA~~~~~~al~---~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~~ 114 (151)
T 3gyz_A 38 DIYSYAYDFYNKGRIEEAEVFFRFLCI---YDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQ 114 (151)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHHHHHH
Confidence 455555566666666666666666663 234 3566666777777777777777777665 2233 466778888888
Q ss_pred HhcCChHHHHHHHHHHhhcCCCCc
Q 036237 496 RNHGNKDIGEYAANNLIKVAPDTI 519 (689)
Q Consensus 496 ~~~g~~~~a~~~~~~~~~~~p~~~ 519 (689)
...|++++|+..+++++++.|+++
T Consensus 115 ~~lg~~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 115 LRLKAPLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp HHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCCHH
Confidence 888888888888888888888653
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.31 E-value=4.9e-06 Score=77.10 Aligned_cols=116 Identities=15% Similarity=0.026 Sum_probs=56.6
Q ss_pred hcCCHHHHHH---HHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHhccCcHH
Q 036237 363 KCGSIESALT---VFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRM----GMKPT-AITFIGVLNACSHAGLVN 434 (689)
Q Consensus 363 ~~g~~~~A~~---~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p~-~~t~~~ll~a~~~~g~~~ 434 (689)
..|++++|.+ .+..-+......+..+...|...|++++|+..|++.... |..|. ..++..+...+...|+++
T Consensus 4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 83 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWD 83 (203)
T ss_dssp ---CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred ccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence 3466666666 443322223445666666666777777777766665541 11111 224555555566666666
Q ss_pred HHHHHHHHhHHhcCCCC-C----hhHHHHHHHHHHhcCCHHHHHHHHHh
Q 036237 435 DGRRYFNMMINDYGIEP-T----IEHYGCLVDILCRTGYLEEAKSTIES 478 (689)
Q Consensus 435 ~a~~~~~~~~~~~~~~p-~----~~~~~~li~~~~~~g~~~~A~~~~~~ 478 (689)
+|...+++......-.+ + ...+..+...+...|++++|...+++
T Consensus 84 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 132 (203)
T 3gw4_A 84 AARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEK 132 (203)
T ss_dssp HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 66666655543211111 1 22344444455555555555444443
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.31 E-value=5.2e-06 Score=71.42 Aligned_cols=98 Identities=8% Similarity=-0.002 Sum_probs=81.4
Q ss_pred CChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchhHHHHHHH
Q 036237 451 PTIEHYGCLVDILCRTGYLEEAKSTIESM-PMRP-NFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNI 528 (689)
Q Consensus 451 p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~ 528 (689)
.+...+..+...+...|++++|...|++. ...| +...|..+...+...|+++.|+..++++++++|+++..+..++.+
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 86 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQC 86 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHH
Confidence 34667777777888888888888887765 2233 577888888899999999999999999999999999999999999
Q ss_pred HHhcCCcchHHHHHHHHHhC
Q 036237 529 YAAAGQWDKVSEVREMMKKR 548 (689)
Q Consensus 529 ~~~~g~~~~A~~~~~~m~~~ 548 (689)
|...|++++|...+++..+.
T Consensus 87 ~~~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 87 QLEMESYDEAIANLQRAYSL 106 (137)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHH
Confidence 99999999999999988753
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.28 E-value=3.7e-06 Score=75.21 Aligned_cols=94 Identities=11% Similarity=0.031 Sum_probs=54.5
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchhHHHHHHHHHh
Q 036237 454 EHYGCLVDILCRTGYLEEAKSTIESM-PMRP-NFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAA 531 (689)
Q Consensus 454 ~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~~~~ 531 (689)
..+..+...|.+.|++++|.+.|++. ...| +...|..+..++...|++++|+..++++++++|+++..+..++.+|..
T Consensus 12 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 91 (164)
T 3sz7_A 12 DKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLARFD 91 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 34444555555555555555555543 1222 455556666666666666666666666666666666666666666666
Q ss_pred cCCcchHHHHHHHHHh
Q 036237 532 AGQWDKVSEVREMMKK 547 (689)
Q Consensus 532 ~g~~~~A~~~~~~m~~ 547 (689)
.|++++|...+++..+
T Consensus 92 ~g~~~~A~~~~~~al~ 107 (164)
T 3sz7_A 92 MADYKGAKEAYEKGIE 107 (164)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHH
Confidence 6666666666665554
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.27 E-value=1.3e-05 Score=66.42 Aligned_cols=107 Identities=10% Similarity=-0.010 Sum_probs=59.8
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHh
Q 036237 420 FIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESM-PMRP-NFVIWMSLLSGARN 497 (689)
Q Consensus 420 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~ 497 (689)
+..+...+...|++++|...|+..... .+.+...+..+...|.+.|++++|...+++. ...| +...|..+...+..
T Consensus 7 ~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~ 84 (118)
T 1elw_A 7 LKEKGNKALSVGNIDDALQCYSEAIKL--DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEF 84 (118)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence 334444444555555555555554421 1123444555555555555555555555543 1122 45566667777777
Q ss_pred cCChHHHHHHHHHHhhcCCCCchhHHHHHHH
Q 036237 498 HGNKDIGEYAANNLIKVAPDTIGCYVVLSNI 528 (689)
Q Consensus 498 ~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~ 528 (689)
.|++++|...++++++..|+++..+..++.+
T Consensus 85 ~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 115 (118)
T 1elw_A 85 LNRFEEAKRTYEEGLKHEANNPQLKEGLQNM 115 (118)
T ss_dssp TTCHHHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHcCCCCHHHHHHHHHh
Confidence 7777777777777777777776666555544
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.26 E-value=1.7e-05 Score=69.03 Aligned_cols=108 Identities=10% Similarity=0.029 Sum_probs=63.4
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC----hhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHH
Q 036237 420 FIGVLNACSHAGLVNDGRRYFNMMINDYGIEPT----IEHYGCLVDILCRTGYLEEAKSTIESM-PMRP-NFVIWMSLLS 493 (689)
Q Consensus 420 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~ 493 (689)
+..+...+...|++++|...|+... ...|+ ...+..+...|...|++++|...+++. ...| +...|..+..
T Consensus 31 ~~~~a~~~~~~~~~~~A~~~~~~a~---~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~ 107 (148)
T 2dba_A 31 LRKEGNELFKCGDYGGALAAYTQAL---GLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQ 107 (148)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHH---TSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHH---HHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHHH
Confidence 3333344444444444444444443 12233 344445555555555555555555543 1223 5567777777
Q ss_pred HHHhcCChHHHHHHHHHHhhcCCCCchhHHHHHHHHH
Q 036237 494 GARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYA 530 (689)
Q Consensus 494 ~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~~~ 530 (689)
++...|++++|...+++++++.|+++.....+..+..
T Consensus 108 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 144 (148)
T 2dba_A 108 ALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNISG 144 (148)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHC
T ss_pred HHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHh
Confidence 8888888888888888888888888766666655543
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.25 E-value=7.4e-06 Score=75.83 Aligned_cols=168 Identities=7% Similarity=-0.079 Sum_probs=102.4
Q ss_pred hHHhcCCHHHHHHHHHhcCC---CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHH
Q 036237 360 MYSKCGSIESALTVFRAISK---KKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDG 436 (689)
Q Consensus 360 ~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a 436 (689)
.....|.++++.+.++.... .....|..+...+...|++++|+..|++..+. .|+...+... ..+.-
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~--------~~~~~ 82 (198)
T 2fbn_A 13 GRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDF--FIHTEEWDDQ--------ILLDK 82 (198)
T ss_dssp ---------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TTTCTTCCCH--------HHHHH
T ss_pred hhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--Hhcccccchh--------hHHHH
Confidence 33444566666666554332 13446777777788888888888888887763 3322111000 00000
Q ss_pred HHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCChHHHHHHHHHHhhc
Q 036237 437 RRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESM-PMR-PNFVIWMSLLSGARNHGNKDIGEYAANNLIKV 514 (689)
Q Consensus 437 ~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 514 (689)
. .. .....+..+..+|.+.|++++|...+++. ... .+...|..+..++...|+++.|+..+++++++
T Consensus 83 ~---~~--------~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 151 (198)
T 2fbn_A 83 K---KN--------IEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASL 151 (198)
T ss_dssp H---HH--------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred H---HH--------HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 0 00 01245667777888888888888887775 223 36778889999999999999999999999999
Q ss_pred CCCCchhHHHHHHHHHhcCCcchHH-HHHHHHHhC
Q 036237 515 APDTIGCYVVLSNIYAAAGQWDKVS-EVREMMKKR 548 (689)
Q Consensus 515 ~p~~~~~~~~L~~~~~~~g~~~~A~-~~~~~m~~~ 548 (689)
+|+++.++..+..++...|+.+++. ..+..|...
T Consensus 152 ~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~~ 186 (198)
T 2fbn_A 152 NPNNLDIRNSYELCVNKLKEARKKDKLTFGGMFDK 186 (198)
T ss_dssp STTCHHHHHHHHHHHHHHHHHHC------------
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 9999999999999998888887776 455555443
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.24 E-value=6.5e-06 Score=74.59 Aligned_cols=126 Identities=10% Similarity=0.056 Sum_probs=87.4
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHH-HHhcCCH--H
Q 036237 394 MHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDI-LCRTGYL--E 470 (689)
Q Consensus 394 ~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~-~~~~g~~--~ 470 (689)
..|++++|+..|++..... +.+...+..+...+...|++++|...|+.+.+. .+.+...+..+..+ |...|++ +
T Consensus 22 ~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~la~~l~~~~~~~~~~ 98 (177)
T 2e2e_A 22 SQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQL--RGENAELYAALATVLYYQASQHMTA 98 (177)
T ss_dssp -----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HCSCHHHHHHHHHHHHHHTTTCCCH
T ss_pred hccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhcCCcchH
Confidence 4566777777777766532 224456667777777777777777777777642 12245666777777 6677887 8
Q ss_pred HHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchhH
Q 036237 471 EAKSTIESM-PMRP-NFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCY 522 (689)
Q Consensus 471 ~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 522 (689)
+|...++++ ...| +...|..+...+...|+++.|...+++++++.|+++...
T Consensus 99 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 152 (177)
T 2e2e_A 99 QTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRT 152 (177)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccHH
Confidence 888888775 2234 567888888899999999999999999999999876544
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.24 E-value=8.6e-06 Score=68.25 Aligned_cols=96 Identities=18% Similarity=0.210 Sum_probs=87.0
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchhHHHHHHHHH
Q 036237 453 IEHYGCLVDILCRTGYLEEAKSTIESMP--MRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYA 530 (689)
Q Consensus 453 ~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~~~ 530 (689)
...+..+...+.+.|++++|.+.++++- .+.+..+|..+...+...|+++.|...++++++..|+++..+..++.+|.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 88 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYY 88 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH
Confidence 5678889999999999999999998862 23467889999999999999999999999999999999999999999999
Q ss_pred hcCCcchHHHHHHHHHhC
Q 036237 531 AAGQWDKVSEVREMMKKR 548 (689)
Q Consensus 531 ~~g~~~~A~~~~~~m~~~ 548 (689)
..|++++|...++++.+.
T Consensus 89 ~~~~~~~A~~~~~~~~~~ 106 (125)
T 1na0_A 89 KQGDYDEAIEYYQKALEL 106 (125)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHh
Confidence 999999999999998764
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.24 E-value=7.7e-06 Score=67.80 Aligned_cols=96 Identities=10% Similarity=0.095 Sum_probs=86.7
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchhHHHHHHHHH
Q 036237 453 IEHYGCLVDILCRTGYLEEAKSTIESM-PMR-PNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYA 530 (689)
Q Consensus 453 ~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~~~ 530 (689)
...+..+...+...|++++|...+++. ... .+...|..+...+...|+++.|...++++++..|+++..+..++.+|.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~ 83 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALE 83 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 456778889999999999999999986 223 477889999999999999999999999999999999999999999999
Q ss_pred hcCCcchHHHHHHHHHhC
Q 036237 531 AAGQWDKVSEVREMMKKR 548 (689)
Q Consensus 531 ~~g~~~~A~~~~~~m~~~ 548 (689)
..|++++|...+++..+.
T Consensus 84 ~~~~~~~A~~~~~~~~~~ 101 (118)
T 1elw_A 84 FLNRFEEAKRTYEEGLKH 101 (118)
T ss_dssp HTTCHHHHHHHHHHHHTT
T ss_pred HHhhHHHHHHHHHHHHHc
Confidence 999999999999988764
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.23 E-value=9.3e-06 Score=75.15 Aligned_cols=48 Identities=17% Similarity=-0.004 Sum_probs=27.9
Q ss_pred hcCCHHHHHH---HHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHhcc
Q 036237 262 KAGDVDSACE---LFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLI 309 (689)
Q Consensus 262 ~~g~~~~A~~---~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 309 (689)
..|++++|.+ ++..-+.....+++.+...+...|++++|+..+++...
T Consensus 4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 54 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQ 54 (203)
T ss_dssp ---CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence 4566666666 44443333455666677777777777777777766653
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.23 E-value=7.4e-06 Score=69.73 Aligned_cols=97 Identities=10% Similarity=0.030 Sum_probs=88.3
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchhHHHHHHHH
Q 036237 452 TIEHYGCLVDILCRTGYLEEAKSTIESM-PMRP-NFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIY 529 (689)
Q Consensus 452 ~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~~ 529 (689)
+...+..+...+.+.|++++|...+++. ...| +...|..+...+...|++++|+..++++++..|+++..+..++.+|
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~ 94 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAAL 94 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHH
Confidence 3677888999999999999999999986 3444 6788999999999999999999999999999999999999999999
Q ss_pred HhcCCcchHHHHHHHHHhC
Q 036237 530 AAAGQWDKVSEVREMMKKR 548 (689)
Q Consensus 530 ~~~g~~~~A~~~~~~m~~~ 548 (689)
...|++++|.+.+++..+.
T Consensus 95 ~~~~~~~~A~~~~~~~~~~ 113 (133)
T 2lni_A 95 EAMKDYTKAMDVYQKALDL 113 (133)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHh
Confidence 9999999999999988763
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.21 E-value=5.5e-06 Score=70.48 Aligned_cols=94 Identities=9% Similarity=-0.007 Sum_probs=77.7
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCch-------hHHH
Q 036237 454 EHYGCLVDILCRTGYLEEAKSTIESM-PMRP-NFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIG-------CYVV 524 (689)
Q Consensus 454 ~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~-------~~~~ 524 (689)
..+..|...|.+.|++++|++.|++. .+.| +...|..+..++...|++++|+..+++++++.|+++. +|..
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~ 88 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSR 88 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHH
Confidence 34566778888888888888888775 3334 5778899999999999999999999999998886643 6778
Q ss_pred HHHHHHhcCCcchHHHHHHHHHh
Q 036237 525 LSNIYAAAGQWDKVSEVREMMKK 547 (689)
Q Consensus 525 L~~~~~~~g~~~~A~~~~~~m~~ 547 (689)
++.+|...|++++|.+.+++..+
T Consensus 89 lg~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 89 AGNAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHh
Confidence 89999999999999999998765
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.20 E-value=1.3e-05 Score=69.66 Aligned_cols=97 Identities=12% Similarity=0.035 Sum_probs=88.6
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchhHHHHH
Q 036237 452 TIEHYGCLVDILCRTGYLEEAKSTIESM-PMRPN----FVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLS 526 (689)
Q Consensus 452 ~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~ 526 (689)
+...+..+...+.+.|++++|...+++. ...|+ ...|..+...+...|++++|+..++++++..|+++..+..++
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a 106 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRS 106 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHH
Confidence 4677888999999999999999999986 45677 678899999999999999999999999999999999999999
Q ss_pred HHHHhcCCcchHHHHHHHHHhC
Q 036237 527 NIYAAAGQWDKVSEVREMMKKR 548 (689)
Q Consensus 527 ~~~~~~g~~~~A~~~~~~m~~~ 548 (689)
.+|...|++++|...+++..+.
T Consensus 107 ~~~~~~~~~~~A~~~~~~al~~ 128 (148)
T 2dba_A 107 QALEKLGRLDQAVLDLQRCVSL 128 (148)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHc
Confidence 9999999999999999988763
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.18 E-value=1.9e-05 Score=70.19 Aligned_cols=127 Identities=9% Similarity=-0.061 Sum_probs=68.3
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHH
Q 036237 384 HWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDIL 463 (689)
Q Consensus 384 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~ 463 (689)
.|..+...+...|++++|+..|++..+.. +.+...+..+...+...|++++|...++..... .+.+...+..+...|
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~a~~~ 91 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIEL--DKKYIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHH
Confidence 34455555556666666666666655521 123445555555566666666666666665532 122345566666666
Q ss_pred HhcCCHHHHHHHHHhC-CCCC-CHHHH--HHHHHHHHhcCChHHHHHHHHHHhh
Q 036237 464 CRTGYLEEAKSTIESM-PMRP-NFVIW--MSLLSGARNHGNKDIGEYAANNLIK 513 (689)
Q Consensus 464 ~~~g~~~~A~~~~~~~-~~~p-~~~~~--~~ll~~~~~~g~~~~a~~~~~~~~~ 513 (689)
.+.|++++|...++++ ...| +...+ ..++..+...|++++|...+++..+
T Consensus 92 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 92 MALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 6666666666666554 1122 33333 2233335556667777766665544
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.18 E-value=1.5e-05 Score=67.52 Aligned_cols=109 Identities=6% Similarity=-0.087 Sum_probs=71.0
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHH
Q 036237 419 TFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESM-PMRP-NFVIWMSLLSGAR 496 (689)
Q Consensus 419 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~ 496 (689)
.+..+...+...|++++|...|+...+. .+.+...|..+..+|.+.|++++|...+++. ...| +...|..+..++.
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 83 (126)
T 3upv_A 6 EARLEGKEYFTKSDWPNAVKAYTEMIKR--APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQI 83 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 3444445555666666666666665531 1223556666666666666766666666654 2233 5667888888888
Q ss_pred hcCChHHHHHHHHHHhhcC------CCCchhHHHHHHHH
Q 036237 497 NHGNKDIGEYAANNLIKVA------PDTIGCYVVLSNIY 529 (689)
Q Consensus 497 ~~g~~~~a~~~~~~~~~~~------p~~~~~~~~L~~~~ 529 (689)
..|++++|+..++++++++ |+++.....+..+.
T Consensus 84 ~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~ 122 (126)
T 3upv_A 84 AVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKAS 122 (126)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHH
Confidence 8888889999999888888 77766666665543
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.18 E-value=1.6e-05 Score=71.00 Aligned_cols=106 Identities=12% Similarity=0.010 Sum_probs=77.1
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHH
Q 036237 419 TFIGVLNACSHAGLVNDGRRYFNMMINDYGIEP-TIEHYGCLVDILCRTGYLEEAKSTIESM-PMRP-NFVIWMSLLSGA 495 (689)
Q Consensus 419 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~ 495 (689)
.+..+...+...|++++|+..|+...+ +.| +...|..+..+|.+.|++++|...+++. ...| +...|..+..++
T Consensus 13 ~~~~~g~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 89 (164)
T 3sz7_A 13 KLKSEGNAAMARKEYSKAIDLYTQALS---IAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLAR 89 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH---HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 455555666666666666666666663 223 4566677777777777777777777765 2334 577889999999
Q ss_pred HhcCChHHHHHHHHHHhhcCCCCchhHHHHHH
Q 036237 496 RNHGNKDIGEYAANNLIKVAPDTIGCYVVLSN 527 (689)
Q Consensus 496 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~ 527 (689)
...|++++|+..++++++++|+++..+...+.
T Consensus 90 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l 121 (164)
T 3sz7_A 90 FDMADYKGAKEAYEKGIEAEGNGGSDAMKRGL 121 (164)
T ss_dssp HHTTCHHHHHHHHHHHHHHHSSSCCHHHHHHH
T ss_pred HHccCHHHHHHHHHHHHHhCCCchHHHHHHHH
Confidence 99999999999999999999999886655443
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.15 E-value=1e-05 Score=70.34 Aligned_cols=105 Identities=12% Similarity=-0.042 Sum_probs=71.7
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHH
Q 036237 419 TFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESM-PMRP-NFVIWMSLLSGAR 496 (689)
Q Consensus 419 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~ 496 (689)
.+..+...+...|++++|...|+.+... -+.+...|..+..+|.+.|++++|...+++. ...| ++..|..+..++.
T Consensus 20 ~~~~~a~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 97 (142)
T 2xcb_A 20 QLYALGFNQYQAGKWDDAQKIFQALCML--DHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHL 97 (142)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Confidence 3444555566666777777776666631 1223556666777777777777777777665 2223 5567788888888
Q ss_pred hcCChHHHHHHHHHHhhcCCCCchhHHHH
Q 036237 497 NHGNKDIGEYAANNLIKVAPDTIGCYVVL 525 (689)
Q Consensus 497 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~L 525 (689)
..|++++|+..+++++++.|+++......
T Consensus 98 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~ 126 (142)
T 2xcb_A 98 QLGDLDGAESGFYSARALAAAQPAHEALA 126 (142)
T ss_dssp HTTCHHHHHHHHHHHHHHHHTCGGGHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCCCCcchHHHH
Confidence 99999999999999999999887655443
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.14 E-value=1.7e-05 Score=70.70 Aligned_cols=63 Identities=13% Similarity=0.120 Sum_probs=57.0
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCcchHHHHHHHHHh
Q 036237 485 FVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKK 547 (689)
Q Consensus 485 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~~~~~g~~~~A~~~~~~m~~ 547 (689)
...|..+..++...|+++.|+..++++++++|+++.+|..++.+|...|++++|...+++..+
T Consensus 63 ~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~ 125 (162)
T 3rkv_A 63 IPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLR 125 (162)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHh
Confidence 457888888899999999999999999999999999999999999999999999999988776
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=98.13 E-value=8.4e-06 Score=71.06 Aligned_cols=63 Identities=8% Similarity=-0.052 Sum_probs=56.0
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHhhc-------CCCCchhH----HHHHHHHHhcCCcchHHHHHHHHHh
Q 036237 485 FVIWMSLLSGARNHGNKDIGEYAANNLIKV-------APDTIGCY----VVLSNIYAAAGQWDKVSEVREMMKK 547 (689)
Q Consensus 485 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-------~p~~~~~~----~~L~~~~~~~g~~~~A~~~~~~m~~ 547 (689)
...|..+..++...|++++|+..+++++++ +|+++..| +..+.++...|++++|...+++..+
T Consensus 57 a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 57 AFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 348888888889999999999999999888 99998899 9999999999999999999998864
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.12 E-value=2.1e-05 Score=66.43 Aligned_cols=96 Identities=10% Similarity=0.011 Sum_probs=86.8
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchhHHHHHHHHH
Q 036237 453 IEHYGCLVDILCRTGYLEEAKSTIESM-PMR-PNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYA 530 (689)
Q Consensus 453 ~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~~~ 530 (689)
...+..+...+...|++++|...+++. ... .+...|..+...+...|++++|+..++++++..|+++..+..++.+|.
T Consensus 12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLALS 91 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHHH
Confidence 567788889999999999999999986 223 467889999999999999999999999999999999999999999999
Q ss_pred hcCCcchHHHHHHHHHhC
Q 036237 531 AAGQWDKVSEVREMMKKR 548 (689)
Q Consensus 531 ~~g~~~~A~~~~~~m~~~ 548 (689)
..|++++|...+++..+.
T Consensus 92 ~~~~~~~A~~~~~~~~~~ 109 (131)
T 2vyi_A 92 SLNKHVEAVAYYKKALEL 109 (131)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHhc
Confidence 999999999999988764
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.07 E-value=1.6e-05 Score=78.25 Aligned_cols=93 Identities=8% Similarity=-0.110 Sum_probs=44.0
Q ss_pred hhHHHHHHHHHhCCCchHHHHHHHHhHhCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHH
Q 036237 88 VLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMY 167 (689)
Q Consensus 88 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~ 167 (689)
..|..+...+.+.|++++|+..|++..+.. +.+...|..+...+...|++++|...++.+++.. +.+...+..+..+|
T Consensus 5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~ 82 (281)
T 2c2l_A 5 QELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQCQ 82 (281)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 344455555555555555555555555431 1133344444444445555555555555544432 23334444444444
Q ss_pred HhcCChHHHHHHHhh
Q 036237 168 AKFGEIDLGRRVFDA 182 (689)
Q Consensus 168 ~~~g~~~~A~~~~~~ 182 (689)
...|++++|...|++
T Consensus 83 ~~~g~~~~A~~~~~~ 97 (281)
T 2c2l_A 83 LEMESYDEAIANLQR 97 (281)
T ss_dssp HHTTCHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHH
Confidence 445555554444443
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.04 E-value=2.8e-05 Score=66.64 Aligned_cols=99 Identities=9% Similarity=-0.084 Sum_probs=65.4
Q ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHH
Q 036237 417 AITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESM-PMRP-NFVIWMSLLSG 494 (689)
Q Consensus 417 ~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~ 494 (689)
...+..+...+...|++++|...|+..... .+.+...+..+...|...|++++|...+++. ...| +...|..+...
T Consensus 9 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 86 (137)
T 3q49_B 9 AQELKEQGNRLFVGRKYPEAAACYGRAITR--NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQC 86 (137)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHhh--CcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHH
Confidence 445555556666666666666666665532 1223556666666677777777777666654 2223 56677888888
Q ss_pred HHhcCChHHHHHHHHHHhhcCCC
Q 036237 495 ARNHGNKDIGEYAANNLIKVAPD 517 (689)
Q Consensus 495 ~~~~g~~~~a~~~~~~~~~~~p~ 517 (689)
+...|+++.|+..+++++++.|+
T Consensus 87 ~~~~~~~~~A~~~~~~a~~~~p~ 109 (137)
T 3q49_B 87 QLEMESYDEAIANLQRAYSLAKE 109 (137)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHHChh
Confidence 88888888888888888887776
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=98.04 E-value=3.6e-05 Score=81.90 Aligned_cols=118 Identities=10% Similarity=0.045 Sum_probs=75.0
Q ss_pred hHHHhhHHhcCCHHHHHHHHHhcCC---CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhcc
Q 036237 355 TLLIQMYSKCGSIESALTVFRAISK---KKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPT-AITFIGVLNACSHA 430 (689)
Q Consensus 355 ~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~ 430 (689)
..+...|.+.|++++|.+.|++..+ .+...|..+..+|.+.|++++|++.+++..+. .|+ ...+..+..++...
T Consensus 10 ~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~~~~~lg~~~~~~ 87 (477)
T 1wao_1 10 KTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIEL--DKKYIKGYYRRAASNMAL 87 (477)
T ss_dssp SSSSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--CTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHc
Confidence 3345566777888888887776653 34667777777777778888887777777763 443 44666677777777
Q ss_pred CcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHH--HHhcCCHHHHHHHHH
Q 036237 431 GLVNDGRRYFNMMINDYGIEPT-IEHYGCLVDI--LCRTGYLEEAKSTIE 477 (689)
Q Consensus 431 g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~--~~~~g~~~~A~~~~~ 477 (689)
|++++|.+.|++..+. .|+ ...+..+..+ +.+.|++++|.+.++
T Consensus 88 g~~~eA~~~~~~al~~---~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 88 GKFRAALRDYETVVKV---KPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp TCHHHHHHHHHHHHHH---STTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred CCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 7777777777777642 232 3344444444 666677777777666
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.04 E-value=1.4e-05 Score=67.80 Aligned_cols=89 Identities=15% Similarity=0.111 Sum_probs=56.6
Q ss_pred HHHHHHhcCCHHHHHHHHHhCC-CCCC-H---HHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCC---chhHHHHHHHHH
Q 036237 459 LVDILCRTGYLEEAKSTIESMP-MRPN-F---VIWMSLLSGARNHGNKDIGEYAANNLIKVAPDT---IGCYVVLSNIYA 530 (689)
Q Consensus 459 li~~~~~~g~~~~A~~~~~~~~-~~p~-~---~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~L~~~~~ 530 (689)
+...+.+.|++++|...|++.- ..|+ . ..+..+..++...|+++.|+..++++++..|++ +.++..++.+|.
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~ 87 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQY 87 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHH
Confidence 4445555666666666665541 1122 1 355666666677777777777777777777766 556777777777
Q ss_pred hcCCcchHHHHHHHHHh
Q 036237 531 AAGQWDKVSEVREMMKK 547 (689)
Q Consensus 531 ~~g~~~~A~~~~~~m~~ 547 (689)
..|++++|...++++.+
T Consensus 88 ~~g~~~~A~~~~~~~~~ 104 (129)
T 2xev_A 88 GEGKNTEAQQTLQQVAT 104 (129)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 77777777777776665
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.02 E-value=0.00053 Score=68.45 Aligned_cols=179 Identities=13% Similarity=0.069 Sum_probs=104.9
Q ss_pred CHHHHHHHHHhcCC---CChhhHHHHHHHHHHc-C-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHH------
Q 036237 366 SIESALTVFRAISK---KKVGHWTAMIVGLGMH-G-MATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVN------ 434 (689)
Q Consensus 366 ~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~-g-~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~------ 434 (689)
.++++++.++.+.. ++..+|+.-...+.+. + ++++++++++++.+.. .-|...|..-...+.+.|.++
T Consensus 104 ~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~ 182 (349)
T 3q7a_A 104 SLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIEYIHGSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQ 182 (349)
T ss_dssp CHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHH
T ss_pred hHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccccccchhh
Confidence 35666666655543 3444566555555554 5 6667777777766532 223444544444444444444
Q ss_pred --HHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCC-------HHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCh--
Q 036237 435 --DGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGY-------LEEAKSTIESM-PMRP-NFVIWMSLLSGARNHGNK-- 501 (689)
Q Consensus 435 --~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~-------~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~-- 501 (689)
+++++++++++. -.-|...|+....++.+.|+ ++++++.++++ ...| |...|+-+-..+.+.|+.
T Consensus 183 ~~eELe~~~k~I~~--dp~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~~~~ 260 (349)
T 3q7a_A 183 WGSELDWCNEMLRV--DGRNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLIPHNVSAWNYLRGFLKHFSLPLV 260 (349)
T ss_dssp HHHHHHHHHHHHHH--CTTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCSG
T ss_pred HHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCcc
Confidence 677777777642 23345666666666666665 57777777664 2233 666777766666665543
Q ss_pred ------------------HHHHHHHHHHhhcC------CCCchhHHHHHHHHHhcCCcchHHHHHHHHHh
Q 036237 502 ------------------DIGEYAANNLIKVA------PDTIGCYVVLSNIYAAAGQWDKVSEVREMMKK 547 (689)
Q Consensus 502 ------------------~~a~~~~~~~~~~~------p~~~~~~~~L~~~~~~~g~~~~A~~~~~~m~~ 547 (689)
.........++... +..+.+...|+++|...|+.++|.++++.+.+
T Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~ 330 (349)
T 3q7a_A 261 PILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSS 330 (349)
T ss_dssp GGHHHHGGGTC--------------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cccccccccccccccccchhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Confidence 22222233333222 45667788999999999999999999999864
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.01 E-value=7.4e-05 Score=78.45 Aligned_cols=162 Identities=5% Similarity=-0.159 Sum_probs=102.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHC-CCCCCHH----HHHHHHHHHhccCcHHHHHHHHHHhHHhc---CCCCC-hhH
Q 036237 385 WTAMIVGLGMHGMATQALDLFNKMCRM-GMKPTAI----TFIGVLNACSHAGLVNDGRRYFNMMINDY---GIEPT-IEH 455 (689)
Q Consensus 385 ~~~li~~~~~~g~~~~A~~l~~~m~~~-g~~p~~~----t~~~ll~a~~~~g~~~~a~~~~~~~~~~~---~~~p~-~~~ 455 (689)
+..++..|...|++++|.+.+.++... +..++.. ..+.+-..+...|..++|..+++...... +..+. ...
T Consensus 58 l~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 137 (434)
T 4b4t_Q 58 ILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSL 137 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHH
Confidence 566777777788888887777776542 1111111 22223333445677788877777654321 22222 456
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhC-------CCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHhhcC---CCC----ch
Q 036237 456 YGCLVDILCRTGYLEEAKSTIESM-------PMRPN-FVIWMSLLSGARNHGNKDIGEYAANNLIKVA---PDT----IG 520 (689)
Q Consensus 456 ~~~li~~~~~~g~~~~A~~~~~~~-------~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~---p~~----~~ 520 (689)
+..|...|...|++++|..++++. ..+|. ..++..++..|...|+++.|...+++++... |+. ..
T Consensus 138 ~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 217 (434)
T 4b4t_Q 138 SIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAE 217 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred HHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHH
Confidence 777888888888888888887765 11222 3467777788888888888888888877633 222 23
Q ss_pred hHHHHHHHHHhcCCcchHHHHHHHHH
Q 036237 521 CYVVLSNIYAAAGQWDKVSEVREMMK 546 (689)
Q Consensus 521 ~~~~L~~~~~~~g~~~~A~~~~~~m~ 546 (689)
.+..++..+...|++++|...+.+..
T Consensus 218 ~~~~~g~~~~~~~~y~~A~~~~~~a~ 243 (434)
T 4b4t_Q 218 LDLMSGILHCEDKDYKTAFSYFFESF 243 (434)
T ss_dssp HHHHHHHHTTSSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 45667777778888888887776654
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=98.01 E-value=3.9e-05 Score=81.24 Aligned_cols=144 Identities=9% Similarity=-0.033 Sum_probs=100.5
Q ss_pred hhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHH
Q 036237 382 VGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVD 461 (689)
Q Consensus 382 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 461 (689)
...|..+...|.+.|++++|+..|++..+. .|+...+ . -+...+ ... -....|..+..
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~--~p~~~~~----------~-~~~~~~-~~~--------~~~~~~~nla~ 325 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSW--LEMEYGL----------S-EKESKA-SES--------FLLAAFLNLAM 325 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HTTCCSC----------C-HHHHHH-HHH--------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--hcccccC----------C-hHHHHH-HHH--------HHHHHHHHHHH
Confidence 446777788888888888888888887762 3332110 0 000000 000 01356777888
Q ss_pred HHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCcchHH
Q 036237 462 ILCRTGYLEEAKSTIESM-PMRP-NFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVS 539 (689)
Q Consensus 462 ~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~~~~~g~~~~A~ 539 (689)
+|.+.|++++|+..++++ ...| +...|..+..++...|++++|+..++++++++|++..++..++.++.+.|+++++.
T Consensus 326 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~ 405 (457)
T 1kt0_A 326 CYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERD 405 (457)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888888876 2333 67789999999999999999999999999999999999999999999999998876
Q ss_pred H-HHHHHHh
Q 036237 540 E-VREMMKK 547 (689)
Q Consensus 540 ~-~~~~m~~ 547 (689)
+ .++.|..
T Consensus 406 ~~~~~~~f~ 414 (457)
T 1kt0_A 406 RRIYANMFK 414 (457)
T ss_dssp HHHHHHC--
T ss_pred HHHHHHHHh
Confidence 4 4555543
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=98.01 E-value=1.5e-05 Score=84.95 Aligned_cols=116 Identities=11% Similarity=0.094 Sum_probs=82.8
Q ss_pred HHhccCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChH
Q 036237 426 ACSHAGLVNDGRRYFNMMINDYGIEPT-IEHYGCLVDILCRTGYLEEAKSTIESM-PMRP-NFVIWMSLLSGARNHGNKD 502 (689)
Q Consensus 426 a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~ 502 (689)
.+...|++++|.+.|++..+ ..|+ ...|..+..+|.+.|++++|.+.+++. ...| +...|..+..++...|+++
T Consensus 15 ~~~~~g~~~~A~~~~~~Al~---~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~ 91 (477)
T 1wao_1 15 DYFKAKDYENAIKFYSQAIE---LNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFR 91 (477)
T ss_dssp STTTTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHhCCHHHHHHHHHHHHH---hCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH
Confidence 34456667777777766663 2333 566777777777777777777777665 2334 5668888888888899999
Q ss_pred HHHHHHHHHhhcCCCCchhHHHHHHH--HHhcCCcchHHHHHHH
Q 036237 503 IGEYAANNLIKVAPDTIGCYVVLSNI--YAAAGQWDKVSEVREM 544 (689)
Q Consensus 503 ~a~~~~~~~~~~~p~~~~~~~~L~~~--~~~~g~~~~A~~~~~~ 544 (689)
+|+..+++++++.|+++..+..++.+ +.+.|++++|.+.+++
T Consensus 92 eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~ 135 (477)
T 1wao_1 92 AALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEH 135 (477)
T ss_dssp HHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC------
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 99999999999999888888888887 8888999999888773
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.01 E-value=5.6e-05 Score=63.80 Aligned_cols=105 Identities=6% Similarity=-0.074 Sum_probs=55.5
Q ss_pred HHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC----C-CCCC----HHHHHHHHH
Q 036237 423 VLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESM----P-MRPN----FVIWMSLLS 493 (689)
Q Consensus 423 ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~----~-~~p~----~~~~~~ll~ 493 (689)
+...+...|++++|...|+..... .+.+...+..+...|...|++++|...++++ + ..++ ..+|..+..
T Consensus 10 l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~la~ 87 (131)
T 1elr_A 10 LGNDAYKKKDFDTALKHYDKAKEL--DPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGN 87 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHH
Confidence 333344444444444444444321 1122334444444444445555444444443 0 1122 556677777
Q ss_pred HHHhcCChHHHHHHHHHHhhcCCCCchhHHHHHHHHH
Q 036237 494 GARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYA 530 (689)
Q Consensus 494 ~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~~~ 530 (689)
.+...|+++.|...++++++..| ++.....+..+..
T Consensus 88 ~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~ 123 (131)
T 1elr_A 88 SYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEK 123 (131)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHH
T ss_pred HHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHH
Confidence 77888888888888888888777 4555555555443
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.01 E-value=5.2e-05 Score=64.32 Aligned_cols=104 Identities=5% Similarity=-0.047 Sum_probs=58.5
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCCh-hHHHHHHH
Q 036237 384 HWTAMIVGLGMHGMATQALDLFNKMCRMGMKPT-AITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTI-EHYGCLVD 461 (689)
Q Consensus 384 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~-~~~~~li~ 461 (689)
.|..+...+.+.|++++|++.|++..+ +.|+ ...|..+..++...|++++|+..++..++- .|+. ..+..+
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~--~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~---~~~~~~~~~~~-- 82 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIE--LDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEV---GRETRADYKLI-- 82 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---HHHTTCCHHHH--
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHh---CcccchhhHHH--
Confidence 455556666666666666666666655 2333 334555555555566666666555555421 1110 001000
Q ss_pred HHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCC
Q 036237 462 ILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPD 517 (689)
Q Consensus 462 ~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 517 (689)
..+|..+..++...|+++.|+..++++++..|+
T Consensus 83 -----------------------a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~~~ 115 (127)
T 4gcn_A 83 -----------------------AKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFRD 115 (127)
T ss_dssp -----------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCC
T ss_pred -----------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC
Confidence 124566667777778888888888888877773
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.00 E-value=2.1e-05 Score=66.48 Aligned_cols=96 Identities=9% Similarity=0.037 Sum_probs=84.8
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCC-------chhHH
Q 036237 453 IEHYGCLVDILCRTGYLEEAKSTIESM-P-MRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDT-------IGCYV 523 (689)
Q Consensus 453 ~~~~~~li~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~-------~~~~~ 523 (689)
...+..+...+...|++++|...+++. . .+.+...|..+...+...|+++.|...++++++..|++ +.++.
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 356778889999999999999999886 2 23467889999999999999999999999999988766 78899
Q ss_pred HHHHHHHhcCCcchHHHHHHHHHhC
Q 036237 524 VLSNIYAAAGQWDKVSEVREMMKKR 548 (689)
Q Consensus 524 ~L~~~~~~~g~~~~A~~~~~~m~~~ 548 (689)
.++.+|...|++++|.+.+++..+.
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~~ 108 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLAE 108 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHh
Confidence 9999999999999999999998763
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.00 E-value=0.0011 Score=65.78 Aligned_cols=225 Identities=11% Similarity=0.011 Sum_probs=108.3
Q ss_pred HcCChH-HHHHHHHHhccCCCCcChhhH-HHHHHHHHcccc----------hhhHHHHHHHHHHhCCccchhHHhHHHhh
Q 036237 293 LNGRFM-EALELLETMLIGDVLPNDATL-VSALSAVAGLAV----------LNKGRWMHSYIVKNGFVVDGVLGTLLIQM 360 (689)
Q Consensus 293 ~~g~~~-~A~~~~~~m~~~g~~p~~~t~-~~ll~a~~~~~~----------~~~a~~i~~~~~~~g~~~~~~~~~~li~~ 360 (689)
+.|.++ +|++++..++.. .|+..|. +.--..+...+. ++++..++..++... +.+..+|+.-.-.
T Consensus 41 ~~~e~s~eaL~~t~~~L~~--nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~-PKny~aW~hR~wl 117 (331)
T 3dss_A 41 QAGELDESVLELTSQILGA--NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWL 117 (331)
T ss_dssp HTTCCSHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 445443 677777777653 4554442 211111111111 345555555555543 2344455544444
Q ss_pred HHhcC--CHHHHHHHHHhcCC---CChhhHHHHHHHHHHcCC-HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc----
Q 036237 361 YSKCG--SIESALTVFRAISK---KKVGHWTAMIVGLGMHGM-ATQALDLFNKMCRMGMKPTAITFIGVLNACSHA---- 430 (689)
Q Consensus 361 ~~~~g--~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~-~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~---- 430 (689)
+.+.| .++++...++.+.+ +|..+|+--.-.+...|. ++++++.++++.+.. .-|...|+.....+.+.
T Consensus 118 L~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~-p~N~SAW~~R~~ll~~l~~~~ 196 (331)
T 3dss_A 118 LSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQP 196 (331)
T ss_dssp HHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHHSCCC
T ss_pred HhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhhhcc
Confidence 44555 36666666666654 455566666555666666 466777777766632 22333444433333332
Q ss_pred ----------CcHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhc-----------CCHHHHHHHHHhC-CCCCCHHH
Q 036237 431 ----------GLVNDGRRYFNMMINDYGIEP-TIEHYGCLVDILCRT-----------GYLEEAKSTIESM-PMRPNFVI 487 (689)
Q Consensus 431 ----------g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~-----------g~~~~A~~~~~~~-~~~p~~~~ 487 (689)
+.++++++++...+. ..| |...|+-+-..+.+. +.++++++.++++ ...||. .
T Consensus 197 ~~~~~~~~~~~~~~eEle~~~~ai~---~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~pd~-~ 272 (331)
T 3dss_A 197 DSGPQGRLPENVLLKELELVQNAFF---TDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELEPEN-K 272 (331)
T ss_dssp ------CCCHHHHHHHHHHHHHHHH---HSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCTTC-H
T ss_pred ccccccccchHHHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhCccc-c
Confidence 345666666666553 223 344555444444444 3355555555554 233432 2
Q ss_pred HHHHHHHH-----HhcCChHHHHHHHHHHhhcCCCCchhHHHH
Q 036237 488 WMSLLSGA-----RNHGNKDIGEYAANNLIKVAPDTIGCYVVL 525 (689)
Q Consensus 488 ~~~ll~~~-----~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L 525 (689)
|..+..+. ...|..++....+.++++++|...+-|.-|
T Consensus 273 w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r~~~y~d~ 315 (331)
T 3dss_A 273 WCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDL 315 (331)
T ss_dssp HHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGGGHHHHHHH
T ss_pred hHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcchhhHHHHH
Confidence 32211111 123444555555555555665544444443
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.00 E-value=5e-05 Score=62.08 Aligned_cols=99 Identities=14% Similarity=0.002 Sum_probs=62.3
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC---CHHHHHHHHHH
Q 036237 419 TFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESM-PMRP---NFVIWMSLLSG 494 (689)
Q Consensus 419 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p---~~~~~~~ll~~ 494 (689)
.+..+...+...|++++|...|+...+. .+.+...+..+...|.+.|++++|...+++. ...| +...|..+...
T Consensus 8 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~ 85 (112)
T 2kck_A 8 EYYLEGVLQYDAGNYTESIDLFEKAIQL--DPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADA 85 (112)
T ss_dssp GGGGHHHHHHSSCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHH
Confidence 3444445555556666666666555531 1223455566666666666666666666654 2223 46677777788
Q ss_pred HHhc-CChHHHHHHHHHHhhcCCCCc
Q 036237 495 ARNH-GNKDIGEYAANNLIKVAPDTI 519 (689)
Q Consensus 495 ~~~~-g~~~~a~~~~~~~~~~~p~~~ 519 (689)
+... |++++|+..++++++..|+++
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~~p~~~ 111 (112)
T 2kck_A 86 LRYIEGKEVEAEIAEARAKLEHHHHH 111 (112)
T ss_dssp HTTCSSCSHHHHHHHHHHGGGCCCCC
T ss_pred HHHHhCCHHHHHHHHHHHhhcccCCC
Confidence 8888 888888888888888887654
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=97.99 E-value=5.7e-05 Score=76.42 Aligned_cols=129 Identities=9% Similarity=-0.040 Sum_probs=100.0
Q ss_pred ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH----------------HHHHHHHHHHhccCcHHHHHHHHHHhH
Q 036237 381 KVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTA----------------ITFIGVLNACSHAGLVNDGRRYFNMMI 444 (689)
Q Consensus 381 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~----------------~t~~~ll~a~~~~g~~~~a~~~~~~~~ 444 (689)
+...|..+...|.+.|++++|+..|++..+. .|+. ..|..+..++...|++++|+..|+.+.
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al 223 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSW--LEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKAL 223 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--TTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--hhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3456777888888888888888888888874 4443 678888888889999999999999888
Q ss_pred HhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHH-HHHHHHHhh
Q 036237 445 NDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESM-PMRP-NFVIWMSLLSGARNHGNKDIG-EYAANNLIK 513 (689)
Q Consensus 445 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a-~~~~~~~~~ 513 (689)
+. -+.+...|..+..+|...|++++|...|+++ ...| +...+..+...+...|+.++| ...+++++.
T Consensus 224 ~~--~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~ 293 (336)
T 1p5q_A 224 EL--DSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMFE 293 (336)
T ss_dssp HH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred Hh--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 42 2234778888899999999999999998876 3334 567888888888888888888 446666664
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=97.99 E-value=5.2e-06 Score=69.43 Aligned_cols=82 Identities=17% Similarity=0.111 Sum_probs=48.4
Q ss_pred cCCHHHHHHHHHhC-CC---CC-CHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCcchHHH
Q 036237 466 TGYLEEAKSTIESM-PM---RP-NFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSE 540 (689)
Q Consensus 466 ~g~~~~A~~~~~~~-~~---~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~~~~~g~~~~A~~ 540 (689)
.|++++|+..|++. .. .| +...|..+...+...|++++|+..++++++++|+++.++..++.+|...|++++|..
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 82 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVE 82 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHH
Confidence 34455555555543 22 13 234566666666666666777777777777777666666677777777777777776
Q ss_pred HHHHHHh
Q 036237 541 VREMMKK 547 (689)
Q Consensus 541 ~~~~m~~ 547 (689)
.+++..+
T Consensus 83 ~~~~al~ 89 (117)
T 3k9i_A 83 LLLKIIA 89 (117)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6666554
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.97 E-value=2.7e-05 Score=68.62 Aligned_cols=62 Identities=16% Similarity=0.026 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHhhcCC------CCchhHHHHHHHHHhcCCcchHHHHHHHHHh
Q 036237 486 VIWMSLLSGARNHGNKDIGEYAANNLIKVAP------DTIGCYVVLSNIYAAAGQWDKVSEVREMMKK 547 (689)
Q Consensus 486 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p------~~~~~~~~L~~~~~~~g~~~~A~~~~~~m~~ 547 (689)
..+..+...+...|++++|...+++++++.+ .....+..++.+|...|++++|.+.+++..+
T Consensus 90 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 90 QSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 3555666667777777777777777765321 1234677888888888888888888887654
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=97.95 E-value=1.4e-05 Score=69.58 Aligned_cols=71 Identities=11% Similarity=0.098 Sum_probs=52.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhC--------CCCCCH-HHH----HHHHHHHHhcCChHHHHHHHHHHhhcCCCCchh
Q 036237 455 HYGCLVDILCRTGYLEEAKSTIESM--------PMRPNF-VIW----MSLLSGARNHGNKDIGEYAANNLIKVAPDTIGC 521 (689)
Q Consensus 455 ~~~~li~~~~~~g~~~~A~~~~~~~--------~~~p~~-~~~----~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 521 (689)
.|..+..++.+.|++++|+..+++. .+.|+. ..| .....++...|++++|+..|+++++++|++...
T Consensus 59 a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~ 138 (159)
T 2hr2_A 59 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGE 138 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHH
Confidence 5555666666666666666555543 236754 488 999999999999999999999999999988765
Q ss_pred HHHH
Q 036237 522 YVVL 525 (689)
Q Consensus 522 ~~~L 525 (689)
+..+
T Consensus 139 ~~~~ 142 (159)
T 2hr2_A 139 TPGK 142 (159)
T ss_dssp CTTH
T ss_pred HHHH
Confidence 4433
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=97.94 E-value=7.5e-05 Score=63.15 Aligned_cols=99 Identities=12% Similarity=0.100 Sum_probs=61.6
Q ss_pred HHHHhccCcHHHHHHHHHHhHHhcCCCCC-h---hHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHH
Q 036237 424 LNACSHAGLVNDGRRYFNMMINDYGIEPT-I---EHYGCLVDILCRTGYLEEAKSTIESM-PMRPN----FVIWMSLLSG 494 (689)
Q Consensus 424 l~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~---~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~ll~~ 494 (689)
...+...|++++|...|+.+.+. .|+ . ..+..+...|.+.|++++|...+++. ...|+ ...+..+..+
T Consensus 9 a~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~ 85 (129)
T 2xev_A 9 AFDALKNGKYDDASQLFLSFLEL---YPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLS 85 (129)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH---CSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHH---CCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHH
Confidence 33444555555555555555532 122 1 35555666666666666666666554 12232 4567777788
Q ss_pred HHhcCChHHHHHHHHHHhhcCCCCchhHHHH
Q 036237 495 ARNHGNKDIGEYAANNLIKVAPDTIGCYVVL 525 (689)
Q Consensus 495 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L 525 (689)
+...|+++.|...++++++..|+++......
T Consensus 86 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~ 116 (129)
T 2xev_A 86 QYGEGKNTEAQQTLQQVATQYPGSDAARVAQ 116 (129)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTSHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHCCCChHHHHHH
Confidence 8888899999999999999888876554433
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.93 E-value=0.00012 Score=67.40 Aligned_cols=94 Identities=9% Similarity=0.006 Sum_probs=73.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhC-CC---CC--------------CHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCC
Q 036237 455 HYGCLVDILCRTGYLEEAKSTIESM-PM---RP--------------NFVIWMSLLSGARNHGNKDIGEYAANNLIKVAP 516 (689)
Q Consensus 455 ~~~~li~~~~~~g~~~~A~~~~~~~-~~---~p--------------~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p 516 (689)
.+..+...+.+.|++++|...|++. .. .| ....|..+..++...|++++|+..++++++++|
T Consensus 40 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p 119 (198)
T 2fbn_A 40 DIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDK 119 (198)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCc
Confidence 3444455555555555555555543 11 11 136888899999999999999999999999999
Q ss_pred CCchhHHHHHHHHHhcCCcchHHHHHHHHHhC
Q 036237 517 DTIGCYVVLSNIYAAAGQWDKVSEVREMMKKR 548 (689)
Q Consensus 517 ~~~~~~~~L~~~~~~~g~~~~A~~~~~~m~~~ 548 (689)
+++.++..++.+|...|++++|...+++..+.
T Consensus 120 ~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 151 (198)
T 2fbn_A 120 NNVKALYKLGVANMYFGFLEEAKENLYKAASL 151 (198)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 99999999999999999999999999988763
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=97.92 E-value=0.0025 Score=63.59 Aligned_cols=222 Identities=14% Similarity=0.045 Sum_probs=139.0
Q ss_pred cCChHHHHHHHHHhccCCCCcChhh-HHHHHHHHHccc-chhhHHHHHHHHHHhCCccchhHHhHHHhhHHhc-C-CHHH
Q 036237 294 NGRFMEALELLETMLIGDVLPNDAT-LVSALSAVAGLA-VLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKC-G-SIES 369 (689)
Q Consensus 294 ~g~~~~A~~~~~~m~~~g~~p~~~t-~~~ll~a~~~~~-~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~-g-~~~~ 369 (689)
.+..++|++++.+++.. .|+..| ++.--..+...+ .++++...++.+++.. +.+..+++.-...+.+. + ++++
T Consensus 67 ~e~se~AL~lt~~~L~~--nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~l~~~~~~~ 143 (349)
T 3q7a_A 67 EEKSERALELTEIIVRM--NPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDRISPQDPVS 143 (349)
T ss_dssp TCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHCCSCCHH
T ss_pred CCCCHHHHHHHHHHHHh--CchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhcCCChHH
Confidence 34445566666555542 333332 233333333444 3555666666555543 23444555544444444 5 6788
Q ss_pred HHHHHHhcCCC---ChhhHHHHHHHHHHcCCHH--------HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCc------
Q 036237 370 ALTVFRAISKK---KVGHWTAMIVGLGMHGMAT--------QALDLFNKMCRMGMKPTAITFIGVLNACSHAGL------ 432 (689)
Q Consensus 370 A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~--------~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~------ 432 (689)
+++.++.+.+. +..+|+--.-.+.+.|.++ ++++.++++.+.. .-|...|+.....+.+.+.
T Consensus 144 EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R~~lL~~l~~~~~~~~ 222 (349)
T 3q7a_A 144 EIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGWRWYLRVSRPGAETSSR 222 (349)
T ss_dssp HHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHTTSTTCCCCHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccccchH
Confidence 88888888764 5567776665555555555 8999999998853 2356677777777777765
Q ss_pred -HHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCH--------------------HHHHHHHHhCC-C-------CC
Q 036237 433 -VNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYL--------------------EEAKSTIESMP-M-------RP 483 (689)
Q Consensus 433 -~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~--------------------~~A~~~~~~~~-~-------~p 483 (689)
+++++++++.++. -.+-|...|+.+-.++.+.|+- .+..++..++. . .+
T Consensus 223 ~~~eELe~~~~aI~--~~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (349)
T 3q7a_A 223 SLQDELIYILKSIH--LIPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLP 300 (349)
T ss_dssp HHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSC
T ss_pred HHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCC
Confidence 7889999988884 2233467788888888777764 34444444442 1 25
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHh-hcCCCCchh
Q 036237 484 NFVIWMSLLSGARNHGNKDIGEYAANNLI-KVAPDTIGC 521 (689)
Q Consensus 484 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~-~~~p~~~~~ 521 (689)
....+..|+..|...|+.++|.++++.+. +.+|-....
T Consensus 301 s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~~dpir~~y 339 (349)
T 3q7a_A 301 VPLALEYLADSFIEQNRVDDAAKVFEKLSSEYDQMRAGY 339 (349)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHH
T ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhChHHHHH
Confidence 77788999999999999999999999987 578865433
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.91 E-value=7.9e-05 Score=78.84 Aligned_cols=124 Identities=10% Similarity=0.044 Sum_probs=92.3
Q ss_pred HHhccCcHHHHHHHHHHhHHhcC--CCC---C-hhHHHHHHHHHHhcCCHHHHHHHHHhC---------CCCCCH-HHHH
Q 036237 426 ACSHAGLVNDGRRYFNMMINDYG--IEP---T-IEHYGCLVDILCRTGYLEEAKSTIESM---------PMRPNF-VIWM 489 (689)
Q Consensus 426 a~~~~g~~~~a~~~~~~~~~~~~--~~p---~-~~~~~~li~~~~~~g~~~~A~~~~~~~---------~~~p~~-~~~~ 489 (689)
.+...|++++|+.++++...... +.| + ..+++.|..+|...|++++|+.++++. +..|+. .+++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 34566777777777766653221 222 2 467788888888888888888887765 234544 4788
Q ss_pred HHHHHHHhcCChHHHHHHHHHHhh-----cCCCCchh---HHHHHHHHHhcCCcchHHHHHHHHHhCC
Q 036237 490 SLLSGARNHGNKDIGEYAANNLIK-----VAPDTIGC---YVVLSNIYAAAGQWDKVSEVREMMKKRG 549 (689)
Q Consensus 490 ~ll~~~~~~g~~~~a~~~~~~~~~-----~~p~~~~~---~~~L~~~~~~~g~~~~A~~~~~~m~~~~ 549 (689)
.|...|..+|++++|+.+++++++ +.|+.|.+ ...|..++...|++++|..++.+++++.
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~ 465 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAA 465 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999998876 56776544 4578888899999999999999998754
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=97.91 E-value=0.0011 Score=65.80 Aligned_cols=216 Identities=10% Similarity=0.030 Sum_probs=149.8
Q ss_pred cccch-hhHHHHHHHHHHhCCccchhHHhHHHhhHHhcCC----------HHHHHHHHHhcCC---CChhhHHHHHHHHH
Q 036237 328 GLAVL-NKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGS----------IESALTVFRAISK---KKVGHWTAMIVGLG 393 (689)
Q Consensus 328 ~~~~~-~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~----------~~~A~~~~~~~~~---~~~~~~~~li~~~~ 393 (689)
+.|.+ ++|......++..+. .+..+++.--..+...|. ++++...++.+.. ++..+|+.-...+.
T Consensus 41 ~~~e~s~eaL~~t~~~L~~nP-~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL~ 119 (331)
T 3dss_A 41 QAGELDESVLELTSQILGANP-DFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLS 119 (331)
T ss_dssp HTTCCSHHHHHHHHHHHTTCT-TCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHHHCc-hhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHh
Confidence 33443 367777777776652 233444443333332222 6788888887764 56778888888888
Q ss_pred HcCC--HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCc-HHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhc----
Q 036237 394 MHGM--ATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGL-VNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRT---- 466 (689)
Q Consensus 394 ~~g~--~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~-~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~---- 466 (689)
..|+ +++++++++++.+.. +-|...|+.-...+...|. ++++++.++.+++. -+-|...|+....++.+.
T Consensus 120 ~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~--~p~N~SAW~~R~~ll~~l~~~~ 196 (331)
T 3dss_A 120 RLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITR--NFSNYSSWHYRSCLLPQLHPQP 196 (331)
T ss_dssp HCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHHSCCC
T ss_pred ccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHhhhcc
Confidence 8884 899999999999853 3355677766667777787 69999999999852 344567777776666655
Q ss_pred ----------CCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc-----------CChHHHHHHHHHHhhcCCCCchhHH
Q 036237 467 ----------GYLEEAKSTIESM-PMRP-NFVIWMSLLSGARNH-----------GNKDIGEYAANNLIKVAPDTIGCYV 523 (689)
Q Consensus 467 ----------g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~-----------g~~~~a~~~~~~~~~~~p~~~~~~~ 523 (689)
+.++++++.+++. ...| |...|+-+-..+... +.+++++..++++++++|++..++.
T Consensus 197 ~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~pd~~w~l~ 276 (331)
T 3dss_A 197 DSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELEPENKWCLL 276 (331)
T ss_dssp ------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred ccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhCcccchHHH
Confidence 5688899988876 2334 677887665555554 4578999999999999999866665
Q ss_pred HHHHHH---HhcCCcchHHHHHHHHHh
Q 036237 524 VLSNIY---AAAGQWDKVSEVREMMKK 547 (689)
Q Consensus 524 ~L~~~~---~~~g~~~~A~~~~~~m~~ 547 (689)
.++... ...|..++....++++++
T Consensus 277 ~~~~~~~~~~~~~~~~~~~~~l~~l~~ 303 (331)
T 3dss_A 277 TIILLMRALDPLLYEKETLQYFSTLKA 303 (331)
T ss_dssp HHHHHHHHHCTTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHhhcccccHHHHHHHHHHHHH
Confidence 554332 246777788888888875
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.88 E-value=6.2e-05 Score=66.20 Aligned_cols=131 Identities=13% Similarity=-0.000 Sum_probs=68.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCC-CC----HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC----hhH
Q 036237 385 WTAMIVGLGMHGMATQALDLFNKMCRMGMK-PT----AITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPT----IEH 455 (689)
Q Consensus 385 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~-p~----~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~ 455 (689)
+..+...|...|++++|+..+++..+.... ++ ..++..+...+...|++++|...++.......-.++ ...
T Consensus 12 ~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 91 (164)
T 3ro3_A 12 FGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQS 91 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHH
Confidence 344444445555555555555444331100 11 123444555555556666666555554421111111 334
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhC-------CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHhhcC
Q 036237 456 YGCLVDILCRTGYLEEAKSTIESM-------PMRP-NFVIWMSLLSGARNHGNKDIGEYAANNLIKVA 515 (689)
Q Consensus 456 ~~~li~~~~~~g~~~~A~~~~~~~-------~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 515 (689)
+..+...+...|++++|.+.+++. +..+ ....+..+...+...|++++|...+++++++.
T Consensus 92 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 159 (164)
T 3ro3_A 92 CYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEIS 159 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Confidence 555666666666666666666554 1111 13356667777788888888888888877643
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=97.87 E-value=5.3e-05 Score=77.62 Aligned_cols=136 Identities=10% Similarity=-0.021 Sum_probs=100.7
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCC-ChhHHHHHHH
Q 036237 383 GHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEP-TIEHYGCLVD 461 (689)
Q Consensus 383 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~ 461 (689)
..|..+...+.+.|++++|++.|++..+. .|+.. ..... +... ...| +...|..+..
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~--~~~~~----------~~~~~-------~~~~---~~~~~~~~~~~nla~ 281 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRY--VEGSR----------AAAED-------ADGA---KLQPVALSCVLNIGA 281 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HHHHH----------HHSCH-------HHHG---GGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHH--hhcCc----------cccCh-------HHHH---HHHHHHHHHHHHHHH
Confidence 35777777788888888888888777651 11100 00001 1111 1223 2567888899
Q ss_pred HHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCcchHH
Q 036237 462 ILCRTGYLEEAKSTIESM-PMRP-NFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVS 539 (689)
Q Consensus 462 ~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~~~~~g~~~~A~ 539 (689)
+|.+.|++++|.+.++++ ...| +...|..+..++...|++++|+..++++++++|++...+..+..++...++.+++.
T Consensus 282 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a~ 361 (370)
T 1ihg_A 282 CKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKE 361 (370)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999886 4445 57789999999999999999999999999999999999999999998888777665
Q ss_pred H
Q 036237 540 E 540 (689)
Q Consensus 540 ~ 540 (689)
+
T Consensus 362 k 362 (370)
T 1ihg_A 362 K 362 (370)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.87 E-value=6.2e-05 Score=63.22 Aligned_cols=95 Identities=12% Similarity=0.048 Sum_probs=57.9
Q ss_pred HHHHHHhccCcHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc
Q 036237 422 GVLNACSHAGLVNDGRRYFNMMINDYGIEP-TIEHYGCLVDILCRTGYLEEAKSTIESM-PMRP-NFVIWMSLLSGARNH 498 (689)
Q Consensus 422 ~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~ 498 (689)
.+...+...|++++|...|+...+ ..| +...|..+..++.+.|++++|+..+++. ...| +...|..+..++...
T Consensus 22 ~~g~~~~~~g~~~~A~~~~~~al~---~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 22 EEGLSMLKLANLAEAALAFEAVCQ---KEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE 98 (121)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH---HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHH---HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 344455566666666666666653 233 3556666666666666666666666654 2334 456777777788888
Q ss_pred CChHHHHHHHHHHhhcCCCCc
Q 036237 499 GNKDIGEYAANNLIKVAPDTI 519 (689)
Q Consensus 499 g~~~~a~~~~~~~~~~~p~~~ 519 (689)
|++++|+..++++++++|+++
T Consensus 99 g~~~~A~~~~~~al~~~P~~~ 119 (121)
T 1hxi_A 99 HNANAALASLRAWLLSQPQYE 119 (121)
T ss_dssp HHHHHHHHHHHHHHC------
T ss_pred CCHHHHHHHHHHHHHhCcCCC
Confidence 888888888888888888653
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.87 E-value=0.0002 Score=75.06 Aligned_cols=123 Identities=11% Similarity=-0.025 Sum_probs=84.2
Q ss_pred HHhhHHhcCCHHHHHHHHHhcCC-----CC----hhhHHHHHHHHHHcCCHHHHHHHHHHHHHC--CC--CCC-HHHHHH
Q 036237 357 LIQMYSKCGSIESALTVFRAISK-----KK----VGHWTAMIVGLGMHGMATQALDLFNKMCRM--GM--KPT-AITFIG 422 (689)
Q Consensus 357 li~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~--g~--~p~-~~t~~~ 422 (689)
+...+...|+.+.|.+++..... .+ ..++..+...|...|++++|..++++.... +. +|. ..++..
T Consensus 101 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~ 180 (434)
T 4b4t_Q 101 IEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLL 180 (434)
T ss_dssp HHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHH
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHH
Confidence 33444456677777776665432 11 236777888899999999999988887653 11 222 236777
Q ss_pred HHHHHhccCcHHHHHHHHHHhHHhcCCCCC-----hhHHHHHHHHHHhcCCHHHHHHHHHhC
Q 036237 423 VLNACSHAGLVNDGRRYFNMMINDYGIEPT-----IEHYGCLVDILCRTGYLEEAKSTIESM 479 (689)
Q Consensus 423 ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-----~~~~~~li~~~~~~g~~~~A~~~~~~~ 479 (689)
++..|...|++++|..+++.......-.++ ...+..++..+...|++++|...|.+.
T Consensus 181 ~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a 242 (434)
T 4b4t_Q 181 ESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFES 242 (434)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHH
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 888899999999999999877643211121 356777888888999999998877654
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.86 E-value=2e-05 Score=79.76 Aligned_cols=147 Identities=12% Similarity=-0.015 Sum_probs=85.3
Q ss_pred hhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHH
Q 036237 382 VGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVD 461 (689)
Q Consensus 382 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 461 (689)
...|..+...+.+.|++++|+..|++... ..|+... +...|+.+++...+. ...|..+..
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~--~~p~~~~-------~~~~~~~~~~~~~l~-----------~~~~~nla~ 238 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIA--YMGDDFM-------FQLYGKYQDMALAVK-----------NPCHLNIAA 238 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHH--HSCHHHH-------HTCCHHHHHHHHHHH-----------THHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHH--Hhccchh-------hhhcccHHHHHHHHH-----------HHHHHHHHH
Confidence 44677788888889999999999999877 3555432 234445554443221 136788889
Q ss_pred HHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchhHHHHHHHH-HhcCCcchH
Q 036237 462 ILCRTGYLEEAKSTIESM-PMRP-NFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIY-AAAGQWDKV 538 (689)
Q Consensus 462 ~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~~-~~~g~~~~A 538 (689)
+|.+.|++++|...+++. ...| +...|..+..++...|++++|+..++++++++|+++.++..|..+. ...+..+++
T Consensus 239 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a 318 (338)
T 2if4_A 239 CLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQ 318 (338)
T ss_dssp HHHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------------
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999876 3334 6778999999999999999999999999999999988888888874 455677778
Q ss_pred HHHHHHHHhC
Q 036237 539 SEVREMMKKR 548 (689)
Q Consensus 539 ~~~~~~m~~~ 548 (689)
..+++.|...
T Consensus 319 ~~~~~~~l~~ 328 (338)
T 2if4_A 319 KEMYKGIFKG 328 (338)
T ss_dssp ----------
T ss_pred HHHHHHhhCC
Confidence 8888877643
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=97.84 E-value=2.8e-05 Score=64.87 Aligned_cols=92 Identities=17% Similarity=0.157 Sum_probs=62.2
Q ss_pred cCcHHHHHHHHHHhHHhcCC-CCC-hhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHH
Q 036237 430 AGLVNDGRRYFNMMINDYGI-EPT-IEHYGCLVDILCRTGYLEEAKSTIESM-PMRP-NFVIWMSLLSGARNHGNKDIGE 505 (689)
Q Consensus 430 ~g~~~~a~~~~~~~~~~~~~-~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~ 505 (689)
.|++++|+..|++..+. +. .|+ ...+..+...|.+.|++++|...+++. ...| +...+..+..++...|++++|+
T Consensus 3 ~g~~~~A~~~~~~al~~-~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIAS-GLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHSS-CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHc-CCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHH
Confidence 45666677777666621 10 232 456677777777777777777777765 2233 5667888888888899999999
Q ss_pred HHHHHHhhcCCCCchhH
Q 036237 506 YAANNLIKVAPDTIGCY 522 (689)
Q Consensus 506 ~~~~~~~~~~p~~~~~~ 522 (689)
..++++++..|+++...
T Consensus 82 ~~~~~al~~~p~~~~~~ 98 (117)
T 3k9i_A 82 ELLLKIIAETSDDETIQ 98 (117)
T ss_dssp HHHHHHHHHHCCCHHHH
T ss_pred HHHHHHHHhCCCcHHHH
Confidence 99999999888876543
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=97.83 E-value=5.3e-05 Score=67.36 Aligned_cols=76 Identities=16% Similarity=0.076 Sum_probs=60.6
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCc-hhHHHHHHH
Q 036237 453 IEHYGCLVDILCRTGYLEEAKSTIESM-PMRP-NFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTI-GCYVVLSNI 528 (689)
Q Consensus 453 ~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~-~~~~~L~~~ 528 (689)
...|..+..+|.+.|++++|...+++. ...| +...|..+..++...|++++|+..++++++++|+++ .....|..+
T Consensus 63 ~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~ 141 (162)
T 3rkv_A 63 IPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIV 141 (162)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 456778888888888888888888775 2334 577899999999999999999999999999999887 444444433
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.81 E-value=4.7e-05 Score=62.35 Aligned_cols=92 Identities=13% Similarity=0.040 Sum_probs=75.0
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCC------chhHH
Q 036237 452 TIEHYGCLVDILCRTGYLEEAKSTIESM-PMRP-NFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDT------IGCYV 523 (689)
Q Consensus 452 ~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~ 523 (689)
+...+..+...+.+.|++++|.+.+++. ...| +...|..+..++...|++++|+..+++++++.|++ ...+.
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 82 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQY 82 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHH
Confidence 3456677788888888888888888775 2233 67788999999999999999999999999999988 77888
Q ss_pred HHHHHHHhcCCcchHHHHHH
Q 036237 524 VLSNIYAAAGQWDKVSEVRE 543 (689)
Q Consensus 524 ~L~~~~~~~g~~~~A~~~~~ 543 (689)
.++.++...|++++|...++
T Consensus 83 ~~~~~~~~~~~~~~a~~~~~ 102 (111)
T 2l6j_A 83 RLELAQGAVGSVQIPVVEVD 102 (111)
T ss_dssp HHHHHHHHHHCCCCCSSSSS
T ss_pred HHHHHHHHHHhHhhhHhHHH
Confidence 88989888888887765544
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.79 E-value=5e-05 Score=76.87 Aligned_cols=151 Identities=8% Similarity=-0.017 Sum_probs=80.8
Q ss_pred hhHHhHHHhhHHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc
Q 036237 351 GVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHA 430 (689)
Q Consensus 351 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~ 430 (689)
...+..+...|.+.|++++|...|++....+.... .+...|+..++...+. ...|..+..++.+.
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~-----~~~~~~~~~~~~~~l~----------~~~~~nla~~~~~~ 243 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDF-----MFQLYGKYQDMALAVK----------NPCHLNIAACLIKL 243 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHH-----HHTCCHHHHHHHHHHH----------THHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccch-----hhhhcccHHHHHHHHH----------HHHHHHHHHHHHHc
Confidence 45567788889999999999999998764222111 1223334444433221 13677788888899
Q ss_pred CcHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHH-HHhcCChHHHHH
Q 036237 431 GLVNDGRRYFNMMINDYGIEP-TIEHYGCLVDILCRTGYLEEAKSTIESM-PMRPN-FVIWMSLLSG-ARNHGNKDIGEY 506 (689)
Q Consensus 431 g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~-~~~~g~~~~a~~ 506 (689)
|++++|+..++...+ +.| +...|..+..+|...|++++|...|+++ ...|+ ...+..|... ....+..+.+..
T Consensus 244 g~~~~A~~~~~~al~---~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~~ 320 (338)
T 2if4_A 244 KRYDEAIGHCNIVLT---EEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQKE 320 (338)
T ss_dssp TCCHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC----------------------------
T ss_pred CCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999998884 234 4778888999999999999999999887 35554 3455555544 244567788889
Q ss_pred HHHHHhhcCCCCc
Q 036237 507 AANNLIKVAPDTI 519 (689)
Q Consensus 507 ~~~~~~~~~p~~~ 519 (689)
.+.++++..|+++
T Consensus 321 ~~~~~l~~~p~~~ 333 (338)
T 2if4_A 321 MYKGIFKGKDEGG 333 (338)
T ss_dssp -------------
T ss_pred HHHHhhCCCCCCC
Confidence 9999999988764
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=97.75 E-value=0.00011 Score=59.23 Aligned_cols=65 Identities=17% Similarity=0.215 Sum_probs=60.8
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCcchHHHHHHHHHh
Q 036237 483 PNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKK 547 (689)
Q Consensus 483 p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~~~~~g~~~~A~~~~~~m~~ 547 (689)
.+...|..+...+...|++++|+..++++++++|+++.+|..++.+|...|++++|.+.+++..+
T Consensus 5 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 5 EDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 36778999999999999999999999999999999999999999999999999999999998765
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=97.72 E-value=0.0012 Score=71.42 Aligned_cols=168 Identities=12% Similarity=0.006 Sum_probs=133.4
Q ss_pred CHHHHHHHHHhcCC---CChhhHHHHHHHHHHcCC----------HHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccC
Q 036237 366 SIESALTVFRAISK---KKVGHWTAMIVGLGMHGM----------ATQALDLFNKMCRMGMKPT-AITFIGVLNACSHAG 431 (689)
Q Consensus 366 ~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~----------~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g 431 (689)
.-++|.+.++.+.. .+...|+.--..+...|+ ++++++.++++.+. .|. ..+|..-..++.+.+
T Consensus 44 ~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~--~pK~y~aW~hR~w~l~~l~ 121 (567)
T 1dce_A 44 LDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV--NPKSYGTWHHRCWLLSRLP 121 (567)
T ss_dssp CSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTCS
T ss_pred CCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcc
Confidence 34567777777764 345678777777777777 89999999999884 454 557887777888888
Q ss_pred --cHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcC-CHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc--------
Q 036237 432 --LVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTG-YLEEAKSTIESM-PMRP-NFVIWMSLLSGARNH-------- 498 (689)
Q Consensus 432 --~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g-~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~-------- 498 (689)
+++++++.++++.+. -+-+...|+.-..++.+.| .++++.+.++++ ...| |...|+.....+...
T Consensus 122 ~~~~~~el~~~~k~l~~--d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~ 199 (567)
T 1dce_A 122 EPNWARELELCARFLEA--DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGP 199 (567)
T ss_dssp SCCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSS
T ss_pred cccHHHHHHHHHHHHhh--ccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccccccc
Confidence 779999999999952 2335677888888888889 899999999887 3444 777898888877663
Q ss_pred ------CChHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCcch
Q 036237 499 ------GNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDK 537 (689)
Q Consensus 499 ------g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~~~~~g~~~~ 537 (689)
+.++++.+.++++++++|++..++.-+..++.+.|+.++
T Consensus 200 ~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 200 QGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp CCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSC
T ss_pred cccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccc
Confidence 457899999999999999999999999999999998665
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=97.71 E-value=0.00033 Score=74.13 Aligned_cols=64 Identities=3% Similarity=-0.060 Sum_probs=60.8
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCcchHHHHHHHHHhC
Q 036237 485 FVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKR 548 (689)
Q Consensus 485 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~~~~~g~~~~A~~~~~~m~~~ 548 (689)
...|..+..++.+.|+++.|+..++++++++|+++.+|..++.+|...|++++|...+++..+.
T Consensus 317 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l 380 (457)
T 1kt0_A 317 LAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV 380 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 5688999999999999999999999999999999999999999999999999999999998864
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=97.69 E-value=0.0002 Score=55.93 Aligned_cols=81 Identities=17% Similarity=0.196 Sum_probs=64.1
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchhHHHHHHHHH
Q 036237 453 IEHYGCLVDILCRTGYLEEAKSTIESM-PMR-PNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYA 530 (689)
Q Consensus 453 ~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~~~ 530 (689)
...+..+...|.+.|++++|...+++. ... .+...|..+...+...|++++|...++++++++|+++..+..++.++.
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~ 88 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQ 88 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 455666777777788888888777765 222 356788888888999999999999999999999999989988888887
Q ss_pred hcC
Q 036237 531 AAG 533 (689)
Q Consensus 531 ~~g 533 (689)
+.|
T Consensus 89 ~~g 91 (91)
T 1na3_A 89 KQG 91 (91)
T ss_dssp HHC
T ss_pred hcC
Confidence 654
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=97.69 E-value=0.00019 Score=73.41 Aligned_cols=112 Identities=4% Similarity=-0.017 Sum_probs=81.9
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCC-CHHHHHHHHHHHH
Q 036237 418 ITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRP-NFVIWMSLLSGAR 496 (689)
Q Consensus 418 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p-~~~~~~~ll~~~~ 496 (689)
..+..+...+.+.|++++|+..|++..+.. |.. ......+++. ...| +...|..+..++.
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~---~~~----------~~~~~~~~~~------~~~~~~~~~~~nla~~~~ 284 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYV---EGS----------RAAAEDADGA------KLQPVALSCVLNIGACKL 284 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHH---HHH----------HHHSCHHHHG------GGHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHh---hcC----------ccccChHHHH------HHHHHHHHHHHHHHHHHH
Confidence 345566666777777777777777666310 000 0000111111 1223 4568899999999
Q ss_pred hcCChHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCcchHHHHHHHHHhC
Q 036237 497 NHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKR 548 (689)
Q Consensus 497 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~~~~~g~~~~A~~~~~~m~~~ 548 (689)
+.|++++|+..++++++++|+++.++..++.+|...|++++|...+++..+.
T Consensus 285 ~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l 336 (370)
T 1ihg_A 285 KMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEI 336 (370)
T ss_dssp HTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999988763
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=97.59 E-value=0.00014 Score=60.10 Aligned_cols=76 Identities=13% Similarity=0.112 Sum_probs=61.8
Q ss_pred HHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCcchHHHHHHHHHh
Q 036237 472 AKSTIESM-PMRP-NFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKK 547 (689)
Q Consensus 472 A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~~~~~g~~~~A~~~~~~m~~ 547 (689)
|.+.+++. ...| +...|..+...+...|+++.|+..++++++++|+++..+..++.+|...|++++|...+++..+
T Consensus 4 a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 4 ITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp HHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44444443 2334 5678888888888999999999999999999999988999999999999999999999988765
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.50 E-value=7.1e-05 Score=65.05 Aligned_cols=83 Identities=8% Similarity=0.038 Sum_probs=59.8
Q ss_pred cCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCC----------hHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcC
Q 036237 466 TGYLEEAKSTIESM-PMRP-NFVIWMSLLSGARNHGN----------KDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAG 533 (689)
Q Consensus 466 ~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~----------~~~a~~~~~~~~~~~p~~~~~~~~L~~~~~~~g 533 (689)
.+.+++|.+.+++. ...| +...|..+..++...++ +++|+..++++++++|+++.+|+.|+++|...|
T Consensus 15 ~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg 94 (158)
T 1zu2_A 15 ILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFA 94 (158)
T ss_dssp HHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhc
Confidence 33444454444443 1222 44455555555554443 579999999999999999999999999999875
Q ss_pred -----------CcchHHHHHHHHHhC
Q 036237 534 -----------QWDKVSEVREMMKKR 548 (689)
Q Consensus 534 -----------~~~~A~~~~~~m~~~ 548 (689)
++++|.+.|++..+.
T Consensus 95 ~l~P~~~~a~g~~~eA~~~~~kAl~l 120 (158)
T 1zu2_A 95 FLTPDETEAKHNFDLATQFFQQAVDE 120 (158)
T ss_dssp HHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCcchhhhhccHHHHHHHHHHHHHh
Confidence 899999999998873
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=97.49 E-value=0.00057 Score=53.92 Aligned_cols=70 Identities=4% Similarity=-0.048 Sum_probs=61.9
Q ss_pred CCCHHHHHHHHHHHHhcCC---hHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCcchHHHHHHHHHhCCCc
Q 036237 482 RPNFVIWMSLLSGARNHGN---KDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFR 551 (689)
Q Consensus 482 ~p~~~~~~~ll~~~~~~g~---~~~a~~~~~~~~~~~p~~~~~~~~L~~~~~~~g~~~~A~~~~~~m~~~~~~ 551 (689)
.+|+..|..+..++...++ .++|...++++++++|+++.+...|+..+.+.|++++|...++++.+....
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~ 75 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP 75 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 3577888888888866655 799999999999999999999999999999999999999999999886543
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.48 E-value=0.00019 Score=75.96 Aligned_cols=115 Identities=9% Similarity=-0.045 Sum_probs=88.7
Q ss_pred HHHhcCCHHHHHHHHHhC---------CCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHhh-----cCCCCc---hhHH
Q 036237 462 ILCRTGYLEEAKSTIESM---------PMRPN-FVIWMSLLSGARNHGNKDIGEYAANNLIK-----VAPDTI---GCYV 523 (689)
Q Consensus 462 ~~~~~g~~~~A~~~~~~~---------~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-----~~p~~~---~~~~ 523 (689)
.+...|++++|+.++++. +..|+ ..+++.|...|...|++++|+.+++++++ +.|++| .+++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 456889999999998775 22344 34789999999999999999999999887 455554 4688
Q ss_pred HHHHHHHhcCCcchHHHHHHHHHhCCCccCCcccEEEECCEEEEEeeCCCCCcChHHHHHHHHHHHHHHHH
Q 036237 524 VLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKA 594 (689)
Q Consensus 524 ~L~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~l~~l~~~m~~ 594 (689)
.|+.+|...|++++|..++++..+--.. .-...||...++...+.+...+++.
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~------------------~lG~~Hp~~~~~~~~l~~~~~e~~~ 450 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLV------------------THGPSHPITKDLEAMRMQTEMELRM 450 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHH------------------HTCTTSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHH------------------HhCCCChHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999987642111 1123689998888887777766654
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=97.42 E-value=0.00024 Score=74.05 Aligned_cols=114 Identities=7% Similarity=0.028 Sum_probs=78.4
Q ss_pred HHHhcCCHHHHHHHHHhC---------CCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHhh-----cCCCC---chhHH
Q 036237 462 ILCRTGYLEEAKSTIESM---------PMRPN-FVIWMSLLSGARNHGNKDIGEYAANNLIK-----VAPDT---IGCYV 523 (689)
Q Consensus 462 ~~~~~g~~~~A~~~~~~~---------~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-----~~p~~---~~~~~ 523 (689)
-+.+.|++++|+.++++. +..|+ ..+++.|..+|...|++++|+.+++++++ +.|++ ...++
T Consensus 296 ~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~ 375 (429)
T 3qwp_A 296 ELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVM 375 (429)
T ss_dssp HHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHH
T ss_pred HHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHH
Confidence 344556666666666543 01122 33677777788888888888888887765 34444 44678
Q ss_pred HHHHHHHhcCCcchHHHHHHHHHhCCCccCCcccEEEECCEEEEEeeCCCCCcChHHHHHHHHHHHHHHH
Q 036237 524 VLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLK 593 (689)
Q Consensus 524 ~L~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~l~~l~~~m~ 593 (689)
.|+.+|...|++++|..++++..+--.. .-...||...++...|.+...+|+
T Consensus 376 nLa~~~~~~g~~~eA~~~~~~Al~i~~~------------------~lG~~Hp~~~~~~~~l~~~~~e~~ 427 (429)
T 3qwp_A 376 KVGKLQLHQGMFPQAMKNLRLAFDIMRV------------------THGREHSLIEDLILLLEECDANIR 427 (429)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHH------------------HTCTTSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHH------------------hcCCCChHHHHHHHHHHHHHHHHh
Confidence 8999999999999999999887642110 112468999999888888887776
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.37 E-value=0.00047 Score=56.18 Aligned_cols=66 Identities=11% Similarity=0.032 Sum_probs=61.5
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCcchHHHHHHHHHhC
Q 036237 483 PNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKR 548 (689)
Q Consensus 483 p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~~~~~g~~~~A~~~~~~m~~~ 548 (689)
++...|..+...+...|++++|+..+++++++.|+++..+..++.+|...|++++|.+.+++..+.
T Consensus 2 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 67 (111)
T 2l6j_A 2 SQFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRY 67 (111)
T ss_dssp THHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS
T ss_pred chHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 356678889999999999999999999999999999999999999999999999999999998864
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=97.28 E-value=0.0023 Score=54.90 Aligned_cols=90 Identities=8% Similarity=-0.172 Sum_probs=50.5
Q ss_pred HHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHhhcCCCCchhHHHHHHHHHh---
Q 036237 459 LVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARN----HGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAA--- 531 (689)
Q Consensus 459 li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~~~~--- 531 (689)
|..+|...+.+++|.+.|++.-...++..+..|...|.. .+|.+.|...++++.+. .++.++..|+.+|..
T Consensus 31 lg~~y~~g~~~~~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g 108 (138)
T 1klx_A 31 LSLVSNSQINKQKLFQYLSKACELNSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL--NDQDGCLILGYKQYAGKG 108 (138)
T ss_dssp HHHHTCTTSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSS
T ss_pred HHHHHHcCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcC--CCHHHHHHHHHHHHCCCC
Confidence 333444444444444444443222344455555555554 45666666666666654 345667777777776
Q ss_pred -cCCcchHHHHHHHHHhCCC
Q 036237 532 -AGQWDKVSEVREMMKKRGF 550 (689)
Q Consensus 532 -~g~~~~A~~~~~~m~~~~~ 550 (689)
.+++++|..++++..+.|.
T Consensus 109 ~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 109 VVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp SCCCHHHHHHHHHHHHHTTC
T ss_pred CCcCHHHHHHHHHHHHHCCC
Confidence 6777777777777666553
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.24 E-value=0.00034 Score=60.75 Aligned_cols=71 Identities=15% Similarity=0.127 Sum_probs=41.5
Q ss_pred HHHHHHHhC-CCCC-CHHHHHHHHHHHHhc-----------CChHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCcch
Q 036237 471 EAKSTIESM-PMRP-NFVIWMSLLSGARNH-----------GNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDK 537 (689)
Q Consensus 471 ~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~-----------g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~~~~~g~~~~ 537 (689)
+|+..|++. .+.| +...|..+..+|... |++++|+..|+++++++|++......+ .. .++
T Consensus 64 eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y~~al-~~------~~k 136 (158)
T 1zu2_A 64 EAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSL-EM------TAK 136 (158)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHH-HH------HHT
T ss_pred HHHHHHHHHHHhCcCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCCCCHHHHHHH-HH------HHh
Confidence 444444443 2233 334555555555544 589999999999999999875332222 22 245
Q ss_pred HHHHHHHHHhC
Q 036237 538 VSEVREMMKKR 548 (689)
Q Consensus 538 A~~~~~~m~~~ 548 (689)
|.++.-.+...
T Consensus 137 a~el~~~~~~~ 147 (158)
T 1zu2_A 137 APQLHAEAYKQ 147 (158)
T ss_dssp HHHHHHHHHHS
T ss_pred CHhccCccccc
Confidence 55555555443
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=97.19 E-value=0.00029 Score=73.24 Aligned_cols=62 Identities=6% Similarity=-0.017 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHhh-----cCCCC---chhHHHHHHHHHhcCCcchHHHHHHHHHh
Q 036237 486 VIWMSLLSGARNHGNKDIGEYAANNLIK-----VAPDT---IGCYVVLSNIYAAAGQWDKVSEVREMMKK 547 (689)
Q Consensus 486 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~-----~~p~~---~~~~~~L~~~~~~~g~~~~A~~~~~~m~~ 547 (689)
.+++.|..+|...|++++|+.+++++++ +.|++ ...|+.|+.+|...|++++|..++++..+
T Consensus 341 ~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 341 HMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence 3566677777777777777777777665 33443 34577888888888888888888887754
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=97.17 E-value=0.0011 Score=51.54 Aligned_cols=65 Identities=17% Similarity=0.260 Sum_probs=60.1
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCcchHHHHHHHHHhC
Q 036237 484 NFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKR 548 (689)
Q Consensus 484 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~~~~~g~~~~A~~~~~~m~~~ 548 (689)
+...|..+...+...|++++|+..++++++..|+++..+..++.+|...|++++|...+++..+.
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 72 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 72 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 35678888899999999999999999999999999999999999999999999999999988763
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=97.06 E-value=0.0027 Score=54.45 Aligned_cols=112 Identities=9% Similarity=-0.052 Sum_probs=88.0
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHh----cCCHHH
Q 036237 396 GMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCR----TGYLEE 471 (689)
Q Consensus 396 g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~ 471 (689)
+++++|++.|++..+.| .|+.. +...|...+.+++|.++|++..+. -+...+..|..+|.. .+++++
T Consensus 9 ~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~----g~~~a~~~Lg~~y~~G~g~~~d~~~ 79 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACEL----NSGNGCRFLGDFYENGKYVKKDLRK 79 (138)
T ss_dssp HHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHCSSSCCCHHH
T ss_pred cCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcC----CCHHHHHHHHHHHHcCCCCCccHHH
Confidence 46788899999888877 44443 556677777888899999888742 456778888888887 789999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHhhcCC
Q 036237 472 AKSTIESMPMRPNFVIWMSLLSGARN----HGNKDIGEYAANNLIKVAP 516 (689)
Q Consensus 472 A~~~~~~~~~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~p 516 (689)
|.+.|++.-..-++..+..|...|.. .+|.+.|...++++.+...
T Consensus 80 A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 80 AAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence 99999887444577888888888888 7899999999999888653
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=97.05 E-value=0.0029 Score=65.70 Aligned_cols=93 Identities=14% Similarity=0.011 Sum_probs=63.4
Q ss_pred cCcHHHHHHHHHHhHHhc--CCCCC----hhHHHHHHHHHHhcCCHHHHHHHHHhC---------CCCCCHH-HHHHHHH
Q 036237 430 AGLVNDGRRYFNMMINDY--GIEPT----IEHYGCLVDILCRTGYLEEAKSTIESM---------PMRPNFV-IWMSLLS 493 (689)
Q Consensus 430 ~g~~~~a~~~~~~~~~~~--~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~~---------~~~p~~~-~~~~ll~ 493 (689)
.|++++|+.++++..... -+.|+ ..+++.|..+|...|++++|+.++++. +..|+.. +++.|..
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 390 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR 390 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 456666666666554321 12222 356777777777778877777777665 2345443 7888899
Q ss_pred HHHhcCChHHHHHHHHHHhh-----cCCCCchhH
Q 036237 494 GARNHGNKDIGEYAANNLIK-----VAPDTIGCY 522 (689)
Q Consensus 494 ~~~~~g~~~~a~~~~~~~~~-----~~p~~~~~~ 522 (689)
.|..+|++++|+.+++++++ +.|++|.+-
T Consensus 391 ~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~ 424 (433)
T 3qww_A 391 LYMGLENKAAGEKALKKAIAIMEVAHGKDHPYIS 424 (433)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHH
T ss_pred HHHhccCHHHHHHHHHHHHHHHHHHcCCCChHHH
Confidence 99999999999999998876 568776443
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=97.04 E-value=0.05 Score=61.84 Aligned_cols=167 Identities=17% Similarity=0.085 Sum_probs=103.0
Q ss_pred HHHHhCCChHHHHH-HHhhCCCCCcchHHHHHHHHHhCCChHHHHHHHhhcCcCCcchHHHHHHHHHhcCCHHHHHHHHH
Q 036237 196 DGYVKKGEVEVAMK-LFDEMPDRDLFSWTCLVDGFSKCGKVEIAREIFYRMPNRNLVSWNAMINGYMKAGDVDSACELFD 274 (689)
Q Consensus 196 ~~~~~~g~~~~A~~-~~~~m~~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 274 (689)
......+++++|.+ ++..++ +......++..+.+.|..+.|.++.+.. ..-......+|++++|.++.+
T Consensus 607 ~~~~~~~~~~~a~~~~l~~i~--~~~~~~~~~~~l~~~~~~~~a~~~~~~~--------~~~f~~~l~~~~~~~A~~~~~ 676 (814)
T 3mkq_A 607 QTLTLRGEIEEAIENVLPNVE--GKDSLTKIARFLEGQEYYEEALNISPDQ--------DQKFELALKVGQLTLARDLLT 676 (814)
T ss_dssp HHHHHTTCHHHHHHHTGGGCC--CHHHHHHHHHHHHHTTCHHHHHHHCCCH--------HHHHHHHHHHTCHHHHHHHHT
T ss_pred hHHHHhCCHHHHHHHHHhcCC--chHHHHHHHHHHHhCCChHHheecCCCc--------chheehhhhcCCHHHHHHHHH
Confidence 34455677777777 554433 0112366667777788888887765321 222455677899999988877
Q ss_pred hcCCCChHHHHHHHHHHHHcCChHHHHHHHHHhccCCCCcChhhHHHHHHHHHcccchhhHHHHHHHHHHhCCccchhHH
Q 036237 275 DMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLG 354 (689)
Q Consensus 275 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~ 354 (689)
.+. +...|..+...+.+.|+++.|.+.|.++.. |..+...+...++.+....+-......|- +
T Consensus 677 ~~~--~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~~~~------~ 739 (814)
T 3mkq_A 677 DES--AEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAETTGK------F 739 (814)
T ss_dssp TCC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHHHTTC------H
T ss_pred hhC--cHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHHHcCc------h
Confidence 664 567899999999999999999999988753 33344444445555555544444444331 1
Q ss_pred hHHHhhHHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHH
Q 036237 355 TLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNK 407 (689)
Q Consensus 355 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~ 407 (689)
+....+|.+.|++++|.+++. +.+++++|..+-+.
T Consensus 740 ~~A~~~~~~~g~~~~a~~~~~------------------~~~~~~~A~~lA~~ 774 (814)
T 3mkq_A 740 NLAFNAYWIAGDIQGAKDLLI------------------KSQRFSEAAFLGST 774 (814)
T ss_dssp HHHHHHHHHHTCHHHHHHHHH------------------HTTCHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHH------------------HcCChHHHHHHHHH
Confidence 223344555666666665543 44566666665544
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=97.03 E-value=0.0096 Score=64.42 Aligned_cols=148 Identities=11% Similarity=0.012 Sum_probs=118.5
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccCc----------HHHHHHHHHHhHHhcCCCCChhHHHHHHHHHH
Q 036237 396 GMATQALDLFNKMCRMGMKPTAI-TFIGVLNACSHAGL----------VNDGRRYFNMMINDYGIEPTIEHYGCLVDILC 464 (689)
Q Consensus 396 g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~~g~----------~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~ 464 (689)
...++|++.++++.. +.|+.. .|+.--.++.+.|+ +++++..++.+.+. -+-+..+|+.-..++.
T Consensus 43 ~~~eeal~~~~~~l~--~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~--~pK~y~aW~hR~w~l~ 118 (567)
T 1dce_A 43 ELDESVLELTSQILG--ANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV--NPKSYGTWHHRCWLLS 118 (567)
T ss_dssp CCSHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH--HCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHH
Confidence 345788999999998 567755 46655555666666 99999999999852 2334678888888888
Q ss_pred hcC--CHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcC-ChHHHHHHHHHHhhcCCCCchhHHHHHHHHHhc-------
Q 036237 465 RTG--YLEEAKSTIESM-PM-RPNFVIWMSLLSGARNHG-NKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAA------- 532 (689)
Q Consensus 465 ~~g--~~~~A~~~~~~~-~~-~p~~~~~~~ll~~~~~~g-~~~~a~~~~~~~~~~~p~~~~~~~~L~~~~~~~------- 532 (689)
+.| ++++|+++++++ .. .-|...|+.-...+...| ..+++...++++++.+|.+..++...+.++.+.
T Consensus 119 ~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~ 198 (567)
T 1dce_A 119 RLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSG 198 (567)
T ss_dssp TCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSS
T ss_pred HcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhccccccc
Confidence 999 779999999998 23 347889999888888889 899999999999999999999999998888774
Q ss_pred -------CCcchHHHHHHHHHh
Q 036237 533 -------GQWDKVSEVREMMKK 547 (689)
Q Consensus 533 -------g~~~~A~~~~~~m~~ 547 (689)
++++++.+.+++...
T Consensus 199 ~~~~~~~~~~~eel~~~~~ai~ 220 (567)
T 1dce_A 199 PQGRLPENVLLKELELVQNAFF 220 (567)
T ss_dssp SCCSSCHHHHHHHHHHHHHHHH
T ss_pred ccccccHHHHHHHHHHHHHHHh
Confidence 456788877776654
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=97.02 E-value=0.0045 Score=64.32 Aligned_cols=99 Identities=12% Similarity=-0.038 Sum_probs=63.1
Q ss_pred HHhccCcHHHHHHHHHHhHHhc--CCCCC----hhHHHHHHHHHHhcCCHHHHHHHHHhC---------CCCCCH-HHHH
Q 036237 426 ACSHAGLVNDGRRYFNMMINDY--GIEPT----IEHYGCLVDILCRTGYLEEAKSTIESM---------PMRPNF-VIWM 489 (689)
Q Consensus 426 a~~~~g~~~~a~~~~~~~~~~~--~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~~---------~~~p~~-~~~~ 489 (689)
.+.+.|++++|+.++++..... -+.|+ ..+++.|..+|...|++++|+.+++++ +..|+. .+++
T Consensus 296 ~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~ 375 (429)
T 3qwp_A 296 ELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVM 375 (429)
T ss_dssp HHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHH
T ss_pred HHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHH
Confidence 3445556666666666555321 12222 345666777777777777777766654 233443 3678
Q ss_pred HHHHHHHhcCChHHHHHHHHHHhh-----cCCCCchhHHH
Q 036237 490 SLLSGARNHGNKDIGEYAANNLIK-----VAPDTIGCYVV 524 (689)
Q Consensus 490 ~ll~~~~~~g~~~~a~~~~~~~~~-----~~p~~~~~~~~ 524 (689)
.|...|..+|++++|+.+++++++ +.|+.|.+-..
T Consensus 376 nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~ 415 (429)
T 3qwp_A 376 KVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDL 415 (429)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHH
Confidence 888888888999999888888876 57877655433
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=97.00 E-value=0.0025 Score=52.40 Aligned_cols=79 Identities=13% Similarity=0.097 Sum_probs=52.7
Q ss_pred HHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 036237 436 GRRYFNMMINDYGIEP-TIEHYGCLVDILCRTGYLEEAKSTIESM-PMRP-NFVIWMSLLSGARNHGNKDIGEYAANNLI 512 (689)
Q Consensus 436 a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 512 (689)
|...|+...+ ..| +...+..+...|.+.|++++|...+++. ...| +...|..+...+...|++++|...+++++
T Consensus 4 a~~~~~~al~---~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 4 ITERLEAMLA---QGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp HHHHHHHHHT---TTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHH---hCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4455555552 233 3566666777777777777777777664 2223 46677778888888888888888888888
Q ss_pred hcCCC
Q 036237 513 KVAPD 517 (689)
Q Consensus 513 ~~~p~ 517 (689)
++.|.
T Consensus 81 ~~~~~ 85 (115)
T 2kat_A 81 AAAQS 85 (115)
T ss_dssp HHHHH
T ss_pred Hhccc
Confidence 87764
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=96.97 E-value=0.024 Score=56.47 Aligned_cols=46 Identities=13% Similarity=0.138 Sum_probs=27.6
Q ss_pred CCChhhHHHHHHHHH--HcCC---HHHHHHHHHHHHHCCCCCCHH-HHHHHHHH
Q 036237 379 KKKVGHWTAMIVGLG--MHGM---ATQALDLFNKMCRMGMKPTAI-TFIGVLNA 426 (689)
Q Consensus 379 ~~~~~~~~~li~~~~--~~g~---~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a 426 (689)
..+...|...+.+.. ..+. ..+|+.+|++..+ ..|+.. .+..+..+
T Consensus 191 p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~--lDP~~a~A~A~la~a 242 (372)
T 3ly7_A 191 PHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQ--SSPEFTYARAEKALV 242 (372)
T ss_dssp CSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH--hCCCCHHHHHHHHHH
Confidence 346677777666543 2333 4688888988887 567743 44433333
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=96.92 E-value=0.0052 Score=52.69 Aligned_cols=90 Identities=10% Similarity=0.027 Sum_probs=61.1
Q ss_pred CCHHHHHHHHHHHHhcC---ChHHHHHHHHHHhhcC-C-CCchhHHHHHHHHHhcCCcchHHHHHHHHHhCCCccCCccc
Q 036237 483 PNFVIWMSLLSGARNHG---NKDIGEYAANNLIKVA-P-DTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSS 557 (689)
Q Consensus 483 p~~~~~~~ll~~~~~~g---~~~~a~~~~~~~~~~~-p-~~~~~~~~L~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~ 557 (689)
++..+.-.+..++.+.+ +.++|+.+++.+++.+ | ++..+++.|+-+|.+.|++++|.++++.+.+.
T Consensus 30 ~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~i--------- 100 (152)
T 1pc2_A 30 VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQT--------- 100 (152)
T ss_dssp CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHH---------
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHHHHHhc---------
Confidence 56666666666777766 5567777888777776 6 45667778888888888888888888877652
Q ss_pred EEEECCEEEEEeeCCCCCcChHHHHHHHHHHHHHHHHCCCC
Q 036237 558 SIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHV 598 (689)
Q Consensus 558 ~~~~~~~~~~f~~~~~~~~~~~~~~~~l~~l~~~m~~~g~~ 598 (689)
+|...++......+.+++++.|++
T Consensus 101 -----------------eP~n~QA~~Lk~~ie~~~~kdgl~ 124 (152)
T 1pc2_A 101 -----------------EPQNNQAKELERLIDKAMKKDGLV 124 (152)
T ss_dssp -----------------CTTCHHHHHHHHHHHHHHHHTTCC
T ss_pred -----------------CCCCHHHHHHHHHHHHHHHHhhHH
Confidence 233345555555566666777654
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=96.75 E-value=0.0052 Score=49.06 Aligned_cols=62 Identities=18% Similarity=0.139 Sum_probs=33.9
Q ss_pred ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhH
Q 036237 381 KVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPT-AITFIGVLNACSHAGLVNDGRRYFNMMI 444 (689)
Q Consensus 381 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~ 444 (689)
+...|..+...|.+.|++++|+..|++..+. .|+ ...|..+..++...|++++|...|++..
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al 68 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVET--DPDYVGTYYHLGKLYERLDRTDDAIDTYAQGI 68 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3445555555556666666666666655552 232 3345555555555666666666555554
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=96.69 E-value=0.013 Score=58.45 Aligned_cols=133 Identities=14% Similarity=0.108 Sum_probs=93.9
Q ss_pred CCCCHHHHHHHHHHHhc-----cCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHH----hcC-------CHHHHHHH
Q 036237 413 MKPTAITFIGVLNACSH-----AGLVNDGRRYFNMMINDYGIEPT-IEHYGCLVDILC----RTG-------YLEEAKST 475 (689)
Q Consensus 413 ~~p~~~t~~~ll~a~~~-----~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~----~~g-------~~~~A~~~ 475 (689)
.+.+...|...+.+... .....+|+.+|++.++ ..|+ ...|..+.-+|. ..+ .+..|.+-
T Consensus 190 ~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~---lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a 266 (372)
T 3ly7_A 190 LPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQ---SSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDN 266 (372)
T ss_dssp SCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHH
Confidence 35566677777766443 2446889999999983 5787 344544333332 111 12223332
Q ss_pred HHhCC-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCcchHHHHHHHHHhCC
Q 036237 476 IESMP-MRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRG 549 (689)
Q Consensus 476 ~~~~~-~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~~~~~g~~~~A~~~~~~m~~~~ 549 (689)
...+. ...++.+|..+...+...|+++.|+..++++++++| +...|..++.++.-.|++++|.+.+++....+
T Consensus 267 ~~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~-s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~ 340 (372)
T 3ly7_A 267 IVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEM-SWLNYVLLGKVYEMKGMNREAADAYLTAFNLR 340 (372)
T ss_dssp HHTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 23332 245788888888888888999999999999999997 56788899999999999999999999887643
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=96.68 E-value=0.0082 Score=47.49 Aligned_cols=64 Identities=17% Similarity=0.212 Sum_probs=49.0
Q ss_pred HHHHHHhcCCHHHHHHHHHhC-CCCC-CHH-HHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchhH
Q 036237 459 LVDILCRTGYLEEAKSTIESM-PMRP-NFV-IWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCY 522 (689)
Q Consensus 459 li~~~~~~g~~~~A~~~~~~~-~~~p-~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 522 (689)
....+.+.|++++|...+++. ...| +.. .|..+..++...|++++|+..++++++++|+++.++
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 72 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQ 72 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHH
Confidence 455667777888888777765 2234 556 788888888888999999999999999999887666
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=96.65 E-value=0.12 Score=42.53 Aligned_cols=138 Identities=9% Similarity=0.003 Sum_probs=92.2
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHH
Q 036237 395 HGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKS 474 (689)
Q Consensus 395 ~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 474 (689)
.|..++..++..+.... .+..-|+.++--....-+=+-..++++.+-+-+.+ ..+|++.....
T Consensus 20 dG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFDi--------------s~C~NlKrVi~ 82 (172)
T 1wy6_A 20 DGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDL--------------DKCQNLKSVVE 82 (172)
T ss_dssp TTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCG--------------GGCSCTHHHHH
T ss_pred hhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhhhcCc--------------HhhhcHHHHHH
Confidence 46666666666666542 23334444443333333334444444444332221 24566666666
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCcchHHHHHHHHHhCCCc
Q 036237 475 TIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFR 551 (689)
Q Consensus 475 ~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~~~~~g~~~~A~~~~~~m~~~~~~ 551 (689)
.+-.+. .+......-++....+|..+.-.+++..++.-+|.+|.....++++|.+.|+..+|.+++.+.-++|++
T Consensus 83 C~~~~n--~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 83 CGVINN--TLNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp HHHHTT--CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHhc--chHHHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 666554 345556677788899999999999999987777778999999999999999999999999999999985
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=96.65 E-value=0.0037 Score=49.57 Aligned_cols=58 Identities=17% Similarity=0.310 Sum_probs=53.7
Q ss_pred HHHHHHhcCChHHHHHHHHHHhhcCCCCch-hHHHHHHHHHhcCCcchHHHHHHHHHhC
Q 036237 491 LLSGARNHGNKDIGEYAANNLIKVAPDTIG-CYVVLSNIYAAAGQWDKVSEVREMMKKR 548 (689)
Q Consensus 491 ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~-~~~~L~~~~~~~g~~~~A~~~~~~m~~~ 548 (689)
....+...|+++.|+..++++++.+|+++. .+..++.+|...|++++|.+.+++..+.
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 64 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 456678899999999999999999999999 9999999999999999999999998864
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=96.37 E-value=0.11 Score=59.11 Aligned_cols=46 Identities=15% Similarity=0.085 Sum_probs=25.6
Q ss_pred HhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHH
Q 036237 362 SKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMC 409 (689)
Q Consensus 362 ~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 409 (689)
..+|++++|.++.+.+ .+...|..+...+.+.|+++.|.+.|.++.
T Consensus 663 l~~~~~~~A~~~~~~~--~~~~~W~~la~~al~~~~~~~A~~~y~~~~ 708 (814)
T 3mkq_A 663 LKVGQLTLARDLLTDE--SAEMKWRALGDASLQRFNFKLAIEAFTNAH 708 (814)
T ss_dssp HHHTCHHHHHHHHTTC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred hhcCCHHHHHHHHHhh--CcHhHHHHHHHHHHHcCCHHHHHHHHHHcc
Confidence 3455555555554443 234456666666666666666666666553
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=95.84 E-value=0.054 Score=43.38 Aligned_cols=71 Identities=11% Similarity=0.035 Sum_probs=48.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhC-----C----CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchhHHHHH
Q 036237 456 YGCLVDILCRTGYLEEAKSTIESM-----P----MRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLS 526 (689)
Q Consensus 456 ~~~li~~~~~~g~~~~A~~~~~~~-----~----~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~ 526 (689)
+-.|...+.+.|+++.|...++.+ + -.+...++..|..++.+.|+++.|...++++++++|+++.+...+.
T Consensus 8 c~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~n~~ 87 (104)
T 2v5f_A 8 CFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGNLK 87 (104)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHhhHH
Confidence 334445555555555555444443 0 1234667888999999999999999999999999999877655543
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=95.77 E-value=0.0017 Score=66.02 Aligned_cols=360 Identities=12% Similarity=0.093 Sum_probs=180.6
Q ss_pred hHHHHHHHHHhCCCchHHHHHHHHhHhCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHH
Q 036237 89 LYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYA 168 (689)
Q Consensus 89 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~ 168 (689)
.|..|..+....+...+|++.|-+. -|...|..++.++.+.|.+++-...+....+. ..++.+=+.|+-+|+
T Consensus 56 VWs~LgkAqL~~~~v~eAIdsyIkA------~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~--~ke~~IDteLi~ayA 127 (624)
T 3lvg_A 56 VWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKK--ARESYVETELIFALA 127 (624)
T ss_dssp CSSSHHHHTTTSSSCTTTTTSSCCC------SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTT--CCSTTTTHHHHHHHH
T ss_pred HHHHHHHHHHccCchHHHHHHHHhC------CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--hcccccHHHHHHHHH
Confidence 4666666666666666666554321 24555666666666666666666666555444 234445556666777
Q ss_pred hcCChHHHHHHHhhCCCCCeehHHHHHHHHHhCCChHHHHHHHhhCCC------------------------CCcchHHH
Q 036237 169 KFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPD------------------------RDLFSWTC 224 (689)
Q Consensus 169 ~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~------------------------~d~~~~~~ 224 (689)
+.+++.+-++++. .+|+.-...+..-|...|.++.|.-+|..+.. .++.||..
T Consensus 128 k~~rL~elEefl~---~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~ktWKe 204 (624)
T 3lvg_A 128 KTNRLAELEEFIN---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKE 204 (624)
T ss_dssp TSCSSSTTTSTTS---CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCSHHH
T ss_pred hhCcHHHHHHHHc---CCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHH
Confidence 7666554433321 24444455555556666666666555555532 25567777
Q ss_pred HHHHHHhCCChHHHH------------------------------HHHhhcCc---CCcchHHHHHHHHHhcCCHHHHHH
Q 036237 225 LVDGFSKCGKVEIAR------------------------------EIFYRMPN---RNLVSWNAMINGYMKAGDVDSACE 271 (689)
Q Consensus 225 li~~~~~~g~~~~A~------------------------------~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~ 271 (689)
+-.+|...+.+..|. .+++.... .....++-|.-.|+|- +.++-.+
T Consensus 205 V~~ACvd~~EfrLAqicGLniIvhadeL~elv~~YE~~G~f~ELIsLlEaglglErAHmGmFTELaILYsKY-~PeKlmE 283 (624)
T 3lvg_A 205 VCFACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKF-KPQKMRE 283 (624)
T ss_dssp HTHHHHHSCTTTTTTHHHHHHHCCSSCCSGGGSSSSTTCCCTTSTTTHHHHTTSTTCCHHHHHHHHHHHHSS-CTTHHHH
T ss_pred HHHHHhCchHHHHHHHhcchhcccHHHHHHHHHHHHhCCCHHHHHHHHHHHhCCCchhHHHHHHHHHHHHhc-CHHHHHH
Confidence 777777666654432 22222111 1144566666666665 2333333
Q ss_pred HHHhcC----CC-------ChHHHHHHHHHHHHcCChHHHHHHHHHhccC-----------CC---CcChh---------
Q 036237 272 LFDDME----IR-------DLITWNSMIAGYELNGRFMEALELLETMLIG-----------DV---LPNDA--------- 317 (689)
Q Consensus 272 ~~~~~~----~~-------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----------g~---~p~~~--------- 317 (689)
-++..- -| ....|..++-.|.+-.+++.|... |... .+ .+|..
T Consensus 284 Hlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~lt---Mi~h~~~Aw~h~~Fkdii~KVaN~EiyYKAi~FY 360 (624)
T 3lvg_A 284 HLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIIT---MMNHPTDAWKEGQFKDIITKVANVELYYRAIQFY 360 (624)
T ss_dssp HHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHHT---TTSCHHHHCCGGGGTTTGGGCSCSHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHHH---HHhCChhhccHHHHHHHHHHcchHHHHHHHHHHH
Confidence 332221 11 345688888888888888876532 2111 00 11111
Q ss_pred ------hHHHHHHHHHcccchhhHHHHHHHHHHh----------CCccchhHHhHHHhhHHhcCCHHHHHHHHHhcCC--
Q 036237 318 ------TLVSALSAVAGLAVLNKGRWMHSYIVKN----------GFVVDGVLGTLLIQMYSKCGSIESALTVFRAISK-- 379 (689)
Q Consensus 318 ------t~~~ll~a~~~~~~~~~a~~i~~~~~~~----------g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-- 379 (689)
-.+-+|.++...=+..++.+++...-.. .-..+..+-.++-+.|....+++.-+...+.-..
T Consensus 361 L~e~P~lL~DLL~vL~prlDh~RvV~~~~k~~~LpLIkpYL~~Vq~~N~~aVNeAln~L~IEEEDy~~LR~SId~ydNFD 440 (624)
T 3lvg_A 361 LEFKPLLLNDLLMVLSPRLDHTRAVNYFSKVKQLPLVKPYLRSVQNHNNKSVNESLNNLFITEEDYQALRTSIDAYDNFD 440 (624)
T ss_dssp TTSCCTTSHHHHHHHCTTCCSTTTHHHHHTTTCGGGGTGGGTSCCCSCCHHHHHHHHHHHHHTTCCHHHHHTTSSCCCSC
T ss_pred HHhChHHHHHHHHhccccCChHHHHHHHHhcCCchhhHHHHHHHHHhhHHHHHHHHHHHHhhhhhHHHHHHHHHHhcccc
Confidence 1233444444333333333333221100 0112344455566666666665544443332221
Q ss_pred ----------CChhhHH-HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcC
Q 036237 380 ----------KKVGHWT-AMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYG 448 (689)
Q Consensus 380 ----------~~~~~~~-~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~ 448 (689)
.+..-+. .-...|.+++++.+++++.++ ...|.-.+...+.+|+.+-+.++++.....
T Consensus 441 ~i~LA~rLEkHeL~eFRrIAA~LYkkn~rw~qsi~l~Kk---------DklykDAietAa~S~~~elaeeLL~yFv~~-- 509 (624)
T 3lvg_A 441 NISLAQRLEKHELIEFRRIAAYLFKGNNRWKQSVELCKK---------DSLYKDAMQYASESKDTELAEELLQWFLQE-- 509 (624)
T ss_dssp TTHHHHHHHTCSSHHHHHHHHHHHHTTCHHHHHSSCSST---------TCCTTGGGTTTTTCCCTTHHHHHHHHHHHH--
T ss_pred HHHHHHHHhhCchHHHHHHHHHHHHhcccHHHHHHHHHh---------cccHHHHHHHHHHcCCHHHHHHHHHHHHHc--
Confidence 1222222 233456677777777765432 111222333445666666676666666532
Q ss_pred CCCChhHHHHHHHHHHhcCCHHHHHHHH
Q 036237 449 IEPTIEHYGCLVDILCRTGYLEEAKSTI 476 (689)
Q Consensus 449 ~~p~~~~~~~li~~~~~~g~~~~A~~~~ 476 (689)
-+.+.|.+.+-.+...=+.+-++++-
T Consensus 510 --g~~EcF~a~LytCYdLlrpDvVlEla 535 (624)
T 3lvg_A 510 --EKRECFGACLFTCYDLLRPDVVLETA 535 (624)
T ss_dssp --CSTHHHHHHHHHTSSSSSCHHHHHHH
T ss_pred --CchHHHHHHHHHHhhccChHHHHHHH
Confidence 23344444444444455566666664
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=95.65 E-value=0.033 Score=53.13 Aligned_cols=87 Identities=11% Similarity=0.100 Sum_probs=69.0
Q ss_pred HHHHHHHHHhC-CCCCC---HHHHHHHHHHHHh-----cCChHHHHHHHHHHhhcCCCC-chhHHHHHHHHHhc-CCcch
Q 036237 469 LEEAKSTIESM-PMRPN---FVIWMSLLSGARN-----HGNKDIGEYAANNLIKVAPDT-IGCYVVLSNIYAAA-GQWDK 537 (689)
Q Consensus 469 ~~~A~~~~~~~-~~~p~---~~~~~~ll~~~~~-----~g~~~~a~~~~~~~~~~~p~~-~~~~~~L~~~~~~~-g~~~~ 537 (689)
..+|...+++. .+.|+ ...|..|...|.+ -|+.+.|++.|+++++++|+. +.+++..+..|+.. |+.++
T Consensus 179 l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~ 258 (301)
T 3u64_A 179 VHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAG 258 (301)
T ss_dssp HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHH
T ss_pred HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHH
Confidence 34555555553 34565 4577888888877 499999999999999999975 99999999999884 99999
Q ss_pred HHHHHHHHHhCCCccCCc
Q 036237 538 VSEVREMMKKRGFRKDPG 555 (689)
Q Consensus 538 A~~~~~~m~~~~~~~~~~ 555 (689)
+.+++++........+|+
T Consensus 259 a~~~L~kAL~a~p~~~P~ 276 (301)
T 3u64_A 259 FDEALDRALAIDPESVPH 276 (301)
T ss_dssp HHHHHHHHHHCCGGGCSS
T ss_pred HHHHHHHHHcCCCCCCCC
Confidence 999999999877664453
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=95.46 E-value=0.059 Score=44.32 Aligned_cols=87 Identities=13% Similarity=0.027 Sum_probs=37.7
Q ss_pred cCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHH---HHHHHHhCC-CC-C--CHHHHHHHHHHHHhcCChH
Q 036237 430 AGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEE---AKSTIESMP-MR-P--NFVIWMSLLSGARNHGNKD 502 (689)
Q Consensus 430 ~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~---A~~~~~~~~-~~-p--~~~~~~~ll~~~~~~g~~~ 502 (689)
...+..+.+-|...... + .|+..+--.+..++.+.....+ ++.++++.- .. | .....-.|.-++.+.|+++
T Consensus 14 ~~~l~~~~~~y~~e~~~-~-~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~ 91 (126)
T 1nzn_A 14 VEDLLKFEKKFQSEKAA-G-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYE 91 (126)
T ss_dssp HHHHHHHHHHHHHHHHH-S-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHhcc-C-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHH
Confidence 33444445555444321 2 1444444455555555554443 444444431 11 2 1112233334444445555
Q ss_pred HHHHHHHHHhhcCCCC
Q 036237 503 IGEYAANNLIKVAPDT 518 (689)
Q Consensus 503 ~a~~~~~~~~~~~p~~ 518 (689)
.|.+.++.+++.+|++
T Consensus 92 ~A~~~~~~lL~~eP~n 107 (126)
T 1nzn_A 92 KALKYVRGLLQTEPQN 107 (126)
T ss_dssp HHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHhCCCC
Confidence 5555555555555544
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.26 E-value=1.3 Score=38.91 Aligned_cols=102 Identities=16% Similarity=0.065 Sum_probs=61.3
Q ss_pred HHHHhcCCHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHhccCCCCcChhhHHHHHHHHHcccchhhHHH
Q 036237 258 NGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRW 337 (689)
Q Consensus 258 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~ 337 (689)
+....+|+++.|.++.+.+ .+...|..|.......|+++-|.+.|.+... +..+.-.|...|+.+.-..
T Consensus 13 ~LAL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~k 81 (177)
T 3mkq_B 13 DLALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLSK 81 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHHH
Confidence 4456778888888887766 3567888888888888888888888887653 3334444444555555444
Q ss_pred HHHHHHHhCCccchhHHhHHHhhHHhcCCHHHHHHHHHh
Q 036237 338 MHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRA 376 (689)
Q Consensus 338 i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 376 (689)
+-+.....|- ++.....+.-.|+++++.++|.+
T Consensus 82 la~iA~~~g~------~n~af~~~l~lGdv~~~i~lL~~ 114 (177)
T 3mkq_B 82 MQNIAQTRED------FGSMLLNTFYNNSTKERSSIFAE 114 (177)
T ss_dssp HHHHHHHTTC------HHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHCcc------HHHHHHHHHHcCCHHHHHHHHHH
Confidence 4444433331 12222333344555555555443
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=95.22 E-value=0.059 Score=46.11 Aligned_cols=71 Identities=11% Similarity=0.023 Sum_probs=47.4
Q ss_pred CChhHHHHHHHHHHhcC---CHHHHHHHHHhC-CCC-C--CHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchh
Q 036237 451 PTIEHYGCLVDILCRTG---YLEEAKSTIESM-PMR-P--NFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGC 521 (689)
Q Consensus 451 p~~~~~~~li~~~~~~g---~~~~A~~~~~~~-~~~-p--~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 521 (689)
++..+.-.+..++.+.+ +.+++..++++. ... | +...+..|.-++.+.|+++.|.+.++.+++++|++..+
T Consensus 30 ~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ieP~n~QA 107 (152)
T 1pc2_A 30 VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQA 107 (152)
T ss_dssp CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHH
Confidence 44555555555555555 344555555543 112 3 24456677788899999999999999999999988643
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=94.95 E-value=0.53 Score=39.37 Aligned_cols=65 Identities=11% Similarity=0.125 Sum_probs=39.7
Q ss_pred CCHHHHHHHHHHHHhcC---ChHHHHHHHHHHhhcCCC-CchhHHHHHHHHHhcCCcchHHHHHHHHHh
Q 036237 483 PNFVIWMSLLSGARNHG---NKDIGEYAANNLIKVAPD-TIGCYVVLSNIYAAAGQWDKVSEVREMMKK 547 (689)
Q Consensus 483 p~~~~~~~ll~~~~~~g---~~~~a~~~~~~~~~~~p~-~~~~~~~L~~~~~~~g~~~~A~~~~~~m~~ 547 (689)
|+..+--.+..++.+.. +...++.+++.++...|. .-...+.|+-++.+.|++++|+++.+.+.+
T Consensus 37 vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~ 105 (144)
T 1y8m_A 37 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 105 (144)
T ss_dssp SCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 44444444444554443 344666677777666663 345666777777777777777777777665
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=94.74 E-value=0.21 Score=38.95 Aligned_cols=69 Identities=10% Similarity=-0.046 Sum_probs=51.6
Q ss_pred CChhHHHHHHHHHHhcCC---HHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCc
Q 036237 451 PTIEHYGCLVDILCRTGY---LEEAKSTIESM-PMRP-NFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTI 519 (689)
Q Consensus 451 p~~~~~~~li~~~~~~g~---~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 519 (689)
+++..+..+..++...++ .++|..++++. ...| ++..+..+...+.+.|+++.|+..++++++.+|+++
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~~ 77 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPNL 77 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTTC
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCc
Confidence 456677777777754444 67888888775 3344 566777888888899999999999999999888743
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.59 E-value=1.2 Score=39.14 Aligned_cols=128 Identities=15% Similarity=0.133 Sum_probs=75.5
Q ss_pred hHHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHH
Q 036237 360 MYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRY 439 (689)
Q Consensus 360 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~ 439 (689)
....+|+++.|.++.+.+ .+...|..|......+|+++-|.+.|.+..+ |..+.--|.-.|+.+.-.++
T Consensus 14 LAL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~kl 82 (177)
T 3mkq_B 14 LALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLSKM 82 (177)
T ss_dssp HHHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHHHH
T ss_pred HHHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHHHH
Confidence 345678888888877766 4566788888888888888888888877643 23333344455666555444
Q ss_pred HHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 036237 440 FNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNL 511 (689)
Q Consensus 440 ~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 511 (689)
-+....+ | -++.-...+.-.|+++++.+++.+.+.-|.... ....+|..+.|.++.+.+
T Consensus 83 a~iA~~~-g------~~n~af~~~l~lGdv~~~i~lL~~~~r~~eA~~------~A~t~g~~~~a~~~~~~~ 141 (177)
T 3mkq_B 83 QNIAQTR-E------DFGSMLLNTFYNNSTKERSSIFAEGGSLPLAYA------VAKANGDEAAASAFLEQA 141 (177)
T ss_dssp HHHHHHT-T------CHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHHH------HHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHC-c------cHHHHHHHHHHcCCHHHHHHHHHHCCChHHHHH------HHHHcCcHHHHHHHHHHh
Confidence 3333321 1 234444555667777777777777653221111 122355556666655443
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=94.06 E-value=0.0029 Score=64.33 Aligned_cols=234 Identities=14% Similarity=0.080 Sum_probs=125.5
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHhhCCCCCeehHHHHHHHHHhCCChHHHHHHHhhCCC--CCcchHHHHHHHHHhCCCh
Q 036237 158 FVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPD--RDLFSWTCLVDGFSKCGKV 235 (689)
Q Consensus 158 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~d~~~~~~li~~~~~~g~~ 235 (689)
.+|..|..++.+.|.+.+|.+.| ++..|+..|..+|....+.|.+++-+..+...++ +++..=+.|+-+|++.+++
T Consensus 55 ~VWs~LgkAqL~~~~v~eAIdsy--IkA~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~ke~~IDteLi~ayAk~~rL 132 (624)
T 3lvg_A 55 AVWSQLAKAQLQKGMVKEAIDSY--IKADDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTNRL 132 (624)
T ss_dssp CCSSSHHHHTTTSSSCTTTTTSS--CCCSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCCSTTTTHHHHHHHHTSCSS
T ss_pred cHHHHHHHHHHccCchHHHHHHH--HhCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccHHHHHHHHHhhCcH
Confidence 34455555555555555554443 2233444455555555555555555555554443 3444444555555555554
Q ss_pred HHHHHHHhhcCcCCcchHHHHHHHHHhcCCHHHHHHHHHhcC------------------------CCChHHHHHHHHHH
Q 036237 236 EIAREIFYRMPNRNLVSWNAMINGYMKAGDVDSACELFDDME------------------------IRDLITWNSMIAGY 291 (689)
Q Consensus 236 ~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~------------------------~~~~~~~~~li~~~ 291 (689)
.+-.+++ ..++..-...+.+-+...|.++.|.-+|..+. ..++.+|-.+-.+|
T Consensus 133 ~elEefl---~~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~ktWKeV~~AC 209 (624)
T 3lvg_A 133 AELEEFI---NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFAC 209 (624)
T ss_dssp STTTSTT---SCCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCSHHHHTHHH
T ss_pred HHHHHHH---cCCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHH
Confidence 4322221 12344444445555555555555555554443 22667888888888
Q ss_pred HHcCChHHHHHHHHHhccCCCCcChhhHHHHHHHHHcccchhhHHHHHHHHHHhCCccchhHHhHHHhhHHhcCCHHHHH
Q 036237 292 ELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESAL 371 (689)
Q Consensus 292 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 371 (689)
...+++.-|.-.--.+. +.|| ....++..|-..|.+++-..+++..... -.....+++-|.-.|+|- +.++-.
T Consensus 210 vd~~EfrLAqicGLniI---vhad--eL~elv~~YE~~G~f~ELIsLlEaglgl-ErAHmGmFTELaILYsKY-~PeKlm 282 (624)
T 3lvg_A 210 VDGKEFRLAQMCGLHIV---VHAD--ELEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTELAILYSKF-KPQKMR 282 (624)
T ss_dssp HHSCTTTTTTHHHHHHH---CCSS--CCSGGGSSSSTTCCCTTSTTTHHHHTTS-TTCCHHHHHHHHHHHHSS-CTTHHH
T ss_pred hCchHHHHHHHhcchhc---ccHH--HHHHHHHHHHhCCCHHHHHHHHHHHhCC-CchhHHHHHHHHHHHHhc-CHHHHH
Confidence 88888776644433332 1122 1223344456667777766666555421 134567778888888775 334444
Q ss_pred HHHHhcCC----C-------ChhhHHHHHHHHHHcCCHHHHHH
Q 036237 372 TVFRAISK----K-------KVGHWTAMIVGLGMHGMATQALD 403 (689)
Q Consensus 372 ~~~~~~~~----~-------~~~~~~~li~~~~~~g~~~~A~~ 403 (689)
+.++.... | ....|.-++-.|.+-.+++.|..
T Consensus 283 EHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~l 325 (624)
T 3lvg_A 283 EHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 325 (624)
T ss_dssp HHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHH
Confidence 33332222 2 34578888888888888887754
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=93.53 E-value=0.27 Score=39.17 Aligned_cols=64 Identities=14% Similarity=0.020 Sum_probs=54.8
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHhhcC-------CCCchhHHHHHHHHHhcCCcchHHHHHHHHHh
Q 036237 484 NFVIWMSLLSGARNHGNKDIGEYAANNLIKVA-------PDTIGCYVVLSNIYAAAGQWDKVSEVREMMKK 547 (689)
Q Consensus 484 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-------p~~~~~~~~L~~~~~~~g~~~~A~~~~~~m~~ 547 (689)
+..-...|...+...|+++.|...++.+++.. +..+.++..|+.+|.+.|++++|..++++..+
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~ 74 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE 74 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 45556688889999999999999999998842 33466899999999999999999999998876
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=92.77 E-value=0.1 Score=49.87 Aligned_cols=81 Identities=11% Similarity=0.124 Sum_probs=46.5
Q ss_pred HHHHHHHHHhHHhcCCCCC---hhHHHHHHHHHHhc-----CCHHHHHHHHHhC-CCCCC--HHHHHHHHHHHHhc-CCh
Q 036237 434 NDGRRYFNMMINDYGIEPT---IEHYGCLVDILCRT-----GYLEEAKSTIESM-PMRPN--FVIWMSLLSGARNH-GNK 501 (689)
Q Consensus 434 ~~a~~~~~~~~~~~~~~p~---~~~~~~li~~~~~~-----g~~~~A~~~~~~~-~~~p~--~~~~~~ll~~~~~~-g~~ 501 (689)
.+|...+++.. .+.|+ -..|..|...|.+. |+.++|.+.|++. .+.|+ ..++......++.. |+.
T Consensus 180 ~~A~a~lerAl---eLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~ 256 (301)
T 3u64_A 180 HAAVMMLERAC---DLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNR 256 (301)
T ss_dssp HHHHHHHHHHH---HHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCH
T ss_pred HHHHHHHHHHH---HhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCH
Confidence 34444444444 24455 34556666666663 6666666666664 23442 45555556665553 777
Q ss_pred HHHHHHHHHHhhcCCC
Q 036237 502 DIGEYAANNLIKVAPD 517 (689)
Q Consensus 502 ~~a~~~~~~~~~~~p~ 517 (689)
+.+.+.+++++...|.
T Consensus 257 ~~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 257 AGFDEALDRALAIDPE 272 (301)
T ss_dssp HHHHHHHHHHHHCCGG
T ss_pred HHHHHHHHHHHcCCCC
Confidence 7777777777776664
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=92.37 E-value=0.51 Score=51.99 Aligned_cols=53 Identities=15% Similarity=0.136 Sum_probs=49.2
Q ss_pred HHHhcCChHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCcchHHHHHHHHH
Q 036237 494 GARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMK 546 (689)
Q Consensus 494 ~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~~~~~g~~~~A~~~~~~m~ 546 (689)
-|...|+++.|+.++++++...|.+..++..|+.+|.+.|+|+.|.-.+..+.
T Consensus 346 FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 346 FLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 36678999999999999999999999999999999999999999999998873
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=92.29 E-value=1.3 Score=36.40 Aligned_cols=78 Identities=12% Similarity=-0.029 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHH---HHHHHHHhHHhcCCCC--ChhHHHHHHHHHHhcCCHHHHH
Q 036237 399 TQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVND---GRRYFNMMINDYGIEP--TIEHYGCLVDILCRTGYLEEAK 473 (689)
Q Consensus 399 ~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~---a~~~~~~~~~~~~~~p--~~~~~~~li~~~~~~g~~~~A~ 473 (689)
..+.+-|.+....|. |+..+-..+..++.++....+ ++.+++.+.+. -.| .....-.|.-++.|.|++++|.
T Consensus 18 ~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~--~~p~~~Rd~lY~LAvg~yklg~Y~~A~ 94 (126)
T 1nzn_A 18 LKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPK--GSKEEQRDYVFYLAVGNYRLKEYEKAL 94 (126)
T ss_dssp HHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTT--SCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHHhhhHHHHH
Confidence 334444444443332 444444445555555554443 56666555532 112 1223334445566666666666
Q ss_pred HHHHhC
Q 036237 474 STIESM 479 (689)
Q Consensus 474 ~~~~~~ 479 (689)
+.++.+
T Consensus 95 ~~~~~l 100 (126)
T 1nzn_A 95 KYVRGL 100 (126)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 666554
|
| >3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} | Back alignment and structure |
|---|
Probab=92.20 E-value=6.1 Score=35.31 Aligned_cols=111 Identities=14% Similarity=0.149 Sum_probs=45.4
Q ss_pred CchhHHHHHHHHHHhcCChHHHHHHHhhCCCCCeehHHHHHHHHHhCCChHHHHHHHhhCCCCCcchHHHHHHHHHhCCC
Q 036237 155 FDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDRDLFSWTCLVDGFSKCGK 234 (689)
Q Consensus 155 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~d~~~~~~li~~~~~~g~ 234 (689)
+|..+....+..+.+.|+.+....+.+.+..+|...-...+.++.+.|..+..-.+...+..+|...-...+.++.+.++
T Consensus 26 ~~~~vr~~A~~~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~ 105 (201)
T 3ltj_A 26 DSYYVRRAAAYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIGDERAVEPLIKALKDEDGWVRQSAAVALGQIGD 105 (201)
T ss_dssp SCHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC
T ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHcCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc
Confidence 34444444444444444433333444444444443333444444444443333333333333444444444444444444
Q ss_pred hHHHHHHHhhcCcCCcchHHHHHHHHHhcCC
Q 036237 235 VEIAREIFYRMPNRNLVSWNAMINGYMKAGD 265 (689)
Q Consensus 235 ~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~ 265 (689)
.+....+...+..++..+-...+.++++.+.
T Consensus 106 ~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~ 136 (201)
T 3ltj_A 106 ERAVEPLIKALKDEDWFVRIAAAFALGEIGD 136 (201)
T ss_dssp GGGHHHHHHHTTCSSHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC
Confidence 3322223333333444444444444444444
|
| >1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A* | Back alignment and structure |
|---|
Probab=91.62 E-value=17 Score=39.16 Aligned_cols=115 Identities=10% Similarity=0.005 Sum_probs=68.4
Q ss_pred CCHHHHHHHHHHHHHCC-CCCCHH--HHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHH
Q 036237 396 GMATQALDLFNKMCRMG-MKPTAI--TFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEA 472 (689)
Q Consensus 396 g~~~~A~~l~~~m~~~g-~~p~~~--t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A 472 (689)
.+.+.|..+|......+ +.+... ....+.......+...++...+..... ..++.....-.+....+.|+++.|
T Consensus 228 ~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~e~~~r~Alr~~d~~~a 304 (618)
T 1qsa_A 228 QDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIM---RSQSTSLIERRVRMALGTGDRRGL 304 (618)
T ss_dssp HCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHH---TCCCHHHHHHHHHHHHHHTCHHHH
T ss_pred cCHHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccc---cCCChHHHHHHHHHHHHCCCHHHH
Confidence 37788998888876533 222221 122223333344534566666666542 223433344455555678999999
Q ss_pred HHHHHhCCCCC--CHHHHHHHHHHHHhcCChHHHHHHHHHHhh
Q 036237 473 KSTIESMPMRP--NFVIWMSLLSGARNHGNKDIGEYAANNLIK 513 (689)
Q Consensus 473 ~~~~~~~~~~p--~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 513 (689)
...|+.|+..+ ...-.-=+..+....|+.++|..+++++.+
T Consensus 305 ~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 305 NTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 99999986432 222222244466778999999999988875
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=91.46 E-value=0.81 Score=37.74 Aligned_cols=46 Identities=13% Similarity=0.170 Sum_probs=25.6
Q ss_pred HHHHHHHHHHhhcCCC-CchhHHHHHHHHHhcCCcchHHHHHHHHHh
Q 036237 502 DIGEYAANNLIKVAPD-TIGCYVVLSNIYAAAGQWDKVSEVREMMKK 547 (689)
Q Consensus 502 ~~a~~~~~~~~~~~p~-~~~~~~~L~~~~~~~g~~~~A~~~~~~m~~ 547 (689)
..|+.+++.+++.+|. ....+..|+-++.+.|++++|.++.+.+.+
T Consensus 60 ~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~ 106 (134)
T 3o48_A 60 RLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 106 (134)
T ss_dssp HHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 3455555555555552 234555566666666666666666655554
|
| >3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} | Back alignment and structure |
|---|
Probab=90.84 E-value=8.9 Score=34.53 Aligned_cols=140 Identities=14% Similarity=0.130 Sum_probs=51.4
Q ss_pred chhHHHHHHHHHHhcCChHHHHHHHhhCCCCCeehHHHHHHHHHhCCChHHHHHHHhhCCCCCcchHHHHHHHHHhCCCh
Q 036237 156 DKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDRDLFSWTCLVDGFSKCGKV 235 (689)
Q Consensus 156 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~d~~~~~~li~~~~~~g~~ 235 (689)
|..+-...+..+.+.|+.+....+.+.+..+|...-...+.++.+.|..+..-.+.+.+..+|...-...+.++.+.|+.
T Consensus 32 ~~~vR~~A~~~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~~ 111 (211)
T 3ltm_A 32 SYYVRRAAAYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIGDERAVEPLIKALKDEDGWVRQSAAVALGQIGDE 111 (211)
T ss_dssp SHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSCHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCG
T ss_pred CHHHHHHHHHHHHHhCCccHHHHHHHHHcCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCcH
Confidence 33333333333444443333333333333333333333333444433332222222333333433333344444444433
Q ss_pred HHHHHHHhhcCcCCcchHHHHHHHHHhcCCHHHHHHHHHhcCCCChHHHHHHHHHHHHcC
Q 036237 236 EIAREIFYRMPNRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNG 295 (689)
Q Consensus 236 ~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g 295 (689)
+....+...+..++..+-...+.++.+.|..+....+...+..++...-...+.++.+.+
T Consensus 112 ~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~ 171 (211)
T 3ltm_A 112 RAVEPLIKALKDEDWFVRIAAAFALGEIGDERAVEPLIKALKDEDGWVRQSAADALGEIG 171 (211)
T ss_dssp GGHHHHHHHTTCSSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC
Confidence 222222222223344444444444444444332222333333334333333344444443
|
| >3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} | Back alignment and structure |
|---|
Probab=89.45 E-value=12 Score=33.73 Aligned_cols=156 Identities=13% Similarity=0.086 Sum_probs=91.2
Q ss_pred ChHHHHHHHhhCCCCCeehHHHHHHHHHhCCChHHHHHHHhhCCCCCcchHHHHHHHHHhCCChHHHHHHHhhcCcCCcc
Q 036237 172 EIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDRDLFSWTCLVDGFSKCGKVEIAREIFYRMPNRNLV 251 (689)
Q Consensus 172 ~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 251 (689)
+.+....+.+.+..+|...-...+..+.+.|..+..-.+.+.+..+|...-...+.++...+..+....+...+..++..
T Consensus 17 ~~~~~~~L~~~L~~~~~~vR~~A~~~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~~~~~~ 96 (211)
T 3ltm_A 17 DPEKVEMYIKNLQDDSYYVRRAAAYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIGDERAVEPLIKALKDEDGW 96 (211)
T ss_dssp CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSCHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHH
T ss_pred CHhHHHHHHHHHcCCCHHHHHHHHHHHHHhCCccHHHHHHHHHcCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHcCCCHH
Confidence 33444444555555666666666667777776554555555555666666666666777766655444555555556667
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHhccCCCCcChhhHHHHHHHHHcccc
Q 036237 252 SWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAV 331 (689)
Q Consensus 252 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~ 331 (689)
+-...+.++.+.++.+....+.+.+..++...-...+.++...|.. ++...+.++.. .++...-...+.++...+.
T Consensus 97 vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~-~~~~~L~~~l~---d~~~~vr~~a~~aL~~~~~ 172 (211)
T 3ltm_A 97 VRQSAAVALGQIGDERAVEPLIKALKDEDWFVRIAAAFALGEIGDE-RAVEPLIKALK---DEDGWVRQSAADALGEIGG 172 (211)
T ss_dssp HHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCG-GGHHHHHHHTT---CSSHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCH-HHHHHHHHHHc---CCCHHHHHHHHHHHHHhCc
Confidence 7777777777777765555555555556665555556666666653 34444555543 2444444555555555544
|
| >3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} | Back alignment and structure |
|---|
Probab=88.67 E-value=13 Score=33.15 Aligned_cols=149 Identities=12% Similarity=0.115 Sum_probs=69.7
Q ss_pred HHhcccCCCChhhHHHHHHHHHhCCCchHHHHHHHHhHhCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCc
Q 036237 77 IFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFD 156 (689)
Q Consensus 77 ~f~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~ 156 (689)
+++.+. .+|...-...+.++.+.+.... ...+.++.. .+|...-...+.++...++.+....+.. ++. .++
T Consensus 19 ~i~~L~-~~~~~vr~~A~~~L~~~~~~~~-~~~L~~~l~---~~~~~vr~~a~~~L~~~~~~~~~~~L~~-~l~---d~~ 89 (201)
T 3ltj_A 19 YIKNLQ-DDSYYVRRAAAYALGKIGDERA-VEPLIKALK---DEDAWVRRAAADALGQIGDERAVEPLIK-ALK---DED 89 (201)
T ss_dssp HHHHTT-CSCHHHHHHHHHHHHHHCCGGG-HHHHHHHTT---CSSHHHHHHHHHHHHHHCCGGGHHHHHH-HTT---CSS
T ss_pred HHHHhc-CCCHHHHHHHHHHHHhcCChhH-HHHHHHHHc---CCCHHHHHHHHHHHHhhCCHHHHHHHHH-HHc---CCC
Confidence 333344 4555544455555555554332 233333332 2344444444555555554433322222 221 455
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHhhCCCCCeehHHHHHHHHHhCCChHHHHHHHhhCCCCCcchHHHHHHHHHhCCC
Q 036237 157 KFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDRDLFSWTCLVDGFSKCGK 234 (689)
Q Consensus 157 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~d~~~~~~li~~~~~~g~ 234 (689)
..+-...+.++.+.|+.+....+.+.+..+|...-...+.++.+.|..+..-.+...+..+|...-...+.++...|.
T Consensus 90 ~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~ 167 (201)
T 3ltj_A 90 GWVRQSAAVALGQIGDERAVEPLIKALKDEDWFVRIAAAFALGEIGDERAVEPLIKALKDEDGWVRQSAADALGEIGG 167 (201)
T ss_dssp HHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHTCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc
Confidence 666666666666666655444455555455555555555555555544333333333333444444444555554444
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=88.27 E-value=3.5 Score=34.04 Aligned_cols=84 Identities=12% Similarity=-0.031 Sum_probs=62.6
Q ss_pred CCCHHHHHHHHhcccCCCChhhHHHHHHHHHhCCCchHHHHHHHHhHhCCCCCCcccHHHHHHHHHhcCChHHHHHHHHH
Q 036237 68 INNLHYARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGL 147 (689)
Q Consensus 68 ~g~~~~A~~~f~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~ 147 (689)
||++......+-.+. .+....+..+..+...|.-++--+++..+.. +.+|++...-.+..+|.+.|+..++.+++.+
T Consensus 74 C~NlKrVi~C~~~~n--~~se~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~ 150 (172)
T 1wy6_A 74 CQNLKSVVECGVINN--TLNEHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIE 150 (172)
T ss_dssp CSCTHHHHHHHHHTT--CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred hhcHHHHHHHHHHhc--chHHHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHH
Confidence 777777777776664 4555667778888888888888888888644 3467777778888888888888888888888
Q ss_pred HHHhCCC
Q 036237 148 VFKLGFG 154 (689)
Q Consensus 148 ~~~~g~~ 154 (689)
+-+.|++
T Consensus 151 AC~kG~k 157 (172)
T 1wy6_A 151 ACKKGEK 157 (172)
T ss_dssp HHHTTCH
T ss_pred HHHhhhH
Confidence 8887753
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=88.02 E-value=3.6 Score=34.74 Aligned_cols=99 Identities=10% Similarity=0.131 Sum_probs=70.3
Q ss_pred CCChhhHHHHHHHHHhCCCc------hHHHHHHHHhHhCCCCCCcc----cHHHHHHHH---HhcCChHHHHHHHHHHHH
Q 036237 84 HPSLVLYNLLIKCYVFNQRS------HEALTLFCDLLDRFLLPDNF----TLPCVIKGA---ARLGAIKEGKQIHGLVFK 150 (689)
Q Consensus 84 ~~~~~~~~~ll~~~~~~g~~------~~a~~~~~~m~~~g~~p~~~----t~~~ll~~~---~~~~~~~~a~~~~~~~~~ 150 (689)
+.|..+|-..+.-.-+.|++ +..+++|++.... ++|+.. .|..+.--| ...++++.|+++|..+++
T Consensus 10 p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~ 88 (161)
T 4h7y_A 10 ANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARA 88 (161)
T ss_dssp CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 56777888888888888999 8888999988763 566542 122222111 234788999999999887
Q ss_pred hCCCCchhHHHHHHHHHHhcCChHHHHHHHhhCC
Q 036237 151 LGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMD 184 (689)
Q Consensus 151 ~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 184 (689)
.+-.- ..+|-.....-.+.|+++.|++++....
T Consensus 89 ~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~Ai 121 (161)
T 4h7y_A 89 NCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAV 121 (161)
T ss_dssp HCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHh
Confidence 63222 6677777777788899999998887543
|
| >2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=87.08 E-value=7.9 Score=29.88 Aligned_cols=59 Identities=22% Similarity=0.185 Sum_probs=45.8
Q ss_pred HHHhcCCHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHhccCCCCcChhhHH
Q 036237 259 GYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLV 320 (689)
Q Consensus 259 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~ 320 (689)
.+...|++++|..+.+.+..||.+.|-+|-.. +.|..+++..-+.++..+| .|....|.
T Consensus 49 SLmNrG~Yq~Al~l~~~~c~pdlepw~ALce~--rlGl~s~le~rL~~la~sg-~p~~q~Fa 107 (116)
T 2p58_C 49 SLMNRGDYASALQQGNKLAYPDLEPWLALCEY--RLGLGSALESRLNRLARSQ-DPRIQTFV 107 (116)
T ss_dssp HHHHTTCHHHHHHHHTTSCCGGGHHHHHHHHH--HHTCHHHHHHHHHHHTTCC-CHHHHHHH
T ss_pred HHHcchhHHHHHHhcCCCCCchHHHHHHHHHH--hcccHHHHHHHHHHHHhCC-CHHHHHHH
Confidence 46678999999999999999999999887654 5788888888887887766 45444443
|
| >2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=87.07 E-value=6.5 Score=30.31 Aligned_cols=87 Identities=15% Similarity=0.243 Sum_probs=58.5
Q ss_pred chhhHHHHHHHHHHhCCccchhHHhHHHhhHHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 036237 331 VLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCR 410 (689)
Q Consensus 331 ~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 410 (689)
..++|..|-+.+...+. ...+--.-+..+...|++++|..+.+....||+..|-+|-. .+.|..+++..-+.++..
T Consensus 22 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~ 97 (116)
T 2p58_C 22 YHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCE--YRLGLGSALESRLNRLAR 97 (116)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHH--HHHTCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHh
Confidence 34556666666555543 22222222344667899999999999998899999988765 466888888888878877
Q ss_pred CCCCCCHHHHHH
Q 036237 411 MGMKPTAITFIG 422 (689)
Q Consensus 411 ~g~~p~~~t~~~ 422 (689)
.| .|....|..
T Consensus 98 sg-~p~~q~Fa~ 108 (116)
T 2p58_C 98 SQ-DPRIQTFVN 108 (116)
T ss_dssp CC-CHHHHHHHH
T ss_pred CC-CHHHHHHHH
Confidence 66 555555543
|
| >2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=86.56 E-value=6.1 Score=30.41 Aligned_cols=86 Identities=13% Similarity=0.159 Sum_probs=59.2
Q ss_pred hhhHHHHHHHHHHhCCccchhHHhHHHhhHHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 036237 332 LNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRM 411 (689)
Q Consensus 332 ~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 411 (689)
.++|..|-+.+...+. ...+--.-+..+...|++++|..+.+....||+..|-+|-. .+.|..+++..-+.++...
T Consensus 22 HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~s 97 (115)
T 2uwj_G 22 HEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAGLGGS 97 (115)
T ss_dssp HHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHhC
Confidence 4556666666555543 22222222344667899999999999999999999988755 4678888888888888877
Q ss_pred CCCCCHHHHHH
Q 036237 412 GMKPTAITFIG 422 (689)
Q Consensus 412 g~~p~~~t~~~ 422 (689)
| .|....|..
T Consensus 98 g-~p~~q~Fa~ 107 (115)
T 2uwj_G 98 S-DPALADFAA 107 (115)
T ss_dssp S-SHHHHHHHH
T ss_pred C-CHHHHHHHH
Confidence 6 565555543
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=85.77 E-value=1.6 Score=44.30 Aligned_cols=68 Identities=12% Similarity=0.038 Sum_probs=55.3
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCcchHHHHHHHHH-----hCCCccCCc
Q 036237 488 WMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMK-----KRGFRKDPG 555 (689)
Q Consensus 488 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~~~~~g~~~~A~~~~~~m~-----~~~~~~~~~ 555 (689)
...++.++...|+.+++...++.++..+|-+-..+..|+.+|.+.|+..+|.+.|+... +-|+.|.+.
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~ 246 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPT 246 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHH
Confidence 34456677788899999998999999999888889999999999999999998888764 357777653
|
| >2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A | Back alignment and structure |
|---|
Probab=84.86 E-value=29 Score=33.50 Aligned_cols=180 Identities=13% Similarity=0.087 Sum_probs=98.7
Q ss_pred HHhCCChHHHHHHHhhcCcCCcchHHHHHHHHHhcCCHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHH----H
Q 036237 229 FSKCGKVEIAREIFYRMPNRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALEL----L 304 (689)
Q Consensus 229 ~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~----~ 304 (689)
....|++=+|.+. |.++..-|.+.+++++|.+++..- ...+.+.|+...|-++ .
T Consensus 23 ~I~~G~yYEAhQ~-----------~Rtl~~Ry~~~~~~~eAidlL~~g-----------a~~ll~~~Q~~sa~DLa~llv 80 (312)
T 2wpv_A 23 KIKAGDYYEAHQT-----------LRTIANRYVRSKSYEHAIELISQG-----------ALSFLKAKQGGSGTDLIFYLL 80 (312)
T ss_dssp HHHHTCHHHHHHH-----------HHHHHHHHHHTTCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHHHHHH
T ss_pred HhhccChHHHHHH-----------HHHHHHHHHHhcCHHHHHHHHHHH-----------HHHHHHCCCcchHHHHHHHHH
Confidence 3444555555554 345666777777777777765431 2234445555444433 3
Q ss_pred HHhccCCCCcChhhHHHHHHHHHcccch-----hhHHHHHHHHHHhC--CccchhHHhHHHhhHHhcCCHHHHHHHHHhc
Q 036237 305 ETMLIGDVLPNDATLVSALSAVAGLAVL-----NKGRWMHSYIVKNG--FVVDGVLGTLLIQMYSKCGSIESALTVFRAI 377 (689)
Q Consensus 305 ~~m~~~g~~p~~~t~~~ll~a~~~~~~~-----~~a~~i~~~~~~~g--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 377 (689)
+-..+.+++++......++..+.....- +-......+..+.| ...|+.....+...|.+.|++.+|+..|-.-
T Consensus 81 ev~~~~~~~~~~~~~~rl~~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~ 160 (312)
T 2wpv_A 81 EVYDLAEVKVDDISVARLVRLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLG 160 (312)
T ss_dssp HHHHHTTCCCSHHHHHHHHHHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTS
T ss_pred HHHHHcCCCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhC
Confidence 3334456667766666666555443211 11222333333333 2347788889999999999999999887633
Q ss_pred CCCChhhHHHHHHHHHHc---CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHH
Q 036237 378 SKKKVGHWTAMIVGLGMH---GMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMIN 445 (689)
Q Consensus 378 ~~~~~~~~~~li~~~~~~---g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 445 (689)
...+...+..|+.-+... |...++--.+- .+++ -|.-.|++..|..+|+...+
T Consensus 161 ~~~s~~~~a~~l~~w~~~~~~~~~~e~dlf~~--------------RaVL-~yL~l~n~~~A~~~~~~f~~ 216 (312)
T 2wpv_A 161 THDSMIKYVDLLWDWLCQVDDIEDSTVAEFFS--------------RLVF-NYLFISNISFAHESKDIFLE 216 (312)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHH--------------HHHH-HHHHTTBHHHHHHHHHHHHH
T ss_pred CCccHHHHHHHHHHHHHhcCCCCcchHHHHHH--------------HHHH-HHHHhcCHHHHHHHHHHHHH
Confidence 222444554444433333 43333211111 1122 23456788888888887654
|
| >2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=84.59 E-value=7.4 Score=29.96 Aligned_cols=59 Identities=14% Similarity=0.009 Sum_probs=45.4
Q ss_pred HHHhcCCHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHhccCCCCcChhhHH
Q 036237 259 GYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLV 320 (689)
Q Consensus 259 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~ 320 (689)
.+...|++++|..+.+.+..||.+.|-+|-. .+.|..+++..-+.++..+| .|....|.
T Consensus 48 SLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~sg-~p~~q~Fa 106 (115)
T 2uwj_G 48 SLANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAGLGGSS-DPALADFA 106 (115)
T ss_dssp HHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHHHHTCS-SHHHHHHH
T ss_pred HHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHhCC-CHHHHHHH
Confidence 4667899999999999999999999988765 36788888888887777665 44444443
|
| >3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A | Back alignment and structure |
|---|
Probab=84.22 E-value=31 Score=34.64 Aligned_cols=57 Identities=9% Similarity=0.033 Sum_probs=30.4
Q ss_pred HHHHHhccCcHHHHHHHHHHhHHhcCCCCC----hhHHHHHHHHHHhcCCHHHHHHHHHhC
Q 036237 423 VLNACSHAGLVNDGRRYFNMMINDYGIEPT----IEHYGCLVDILCRTGYLEEAKSTIESM 479 (689)
Q Consensus 423 ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~~ 479 (689)
++..|...|++.+|.+++..+.++..-..+ .++|..-+.+|...|++.++...+.+.
T Consensus 105 L~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a 165 (394)
T 3txn_A 105 LIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSA 165 (394)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 445556666666666666655543222111 244555555666666666666555443
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=84.13 E-value=4.8 Score=34.01 Aligned_cols=51 Identities=10% Similarity=-0.003 Sum_probs=28.1
Q ss_pred CChHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCcchHHHHHHHHHhCC
Q 036237 499 GNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRG 549 (689)
Q Consensus 499 g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~~~~~g~~~~A~~~~~~m~~~~ 549 (689)
+|.+.|..+|+.++.+...-+..+...+.--.+.|+.+.|++++.+....+
T Consensus 74 ~D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~ 124 (161)
T 4h7y_A 74 QEPDDARDYFQMARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERG 124 (161)
T ss_dssp HCGGGCHHHHHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred cCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccC
Confidence 556666666666655433223334444444455666666666666665544
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=83.90 E-value=9.7 Score=44.76 Aligned_cols=188 Identities=7% Similarity=0.042 Sum_probs=102.2
Q ss_pred HHhhHHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC---------------------
Q 036237 357 LIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKP--------------------- 415 (689)
Q Consensus 357 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p--------------------- 415 (689)
++..+.+.|..+-|.++..-.. .+...--.+..+|...|++++|.+.|++... |+.+
T Consensus 818 l~~~l~~~~~~~~~~~l~~~~~-~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~-~~~~~~~l~~~~~~~~~~~~~~~~~ 895 (1139)
T 4fhn_B 818 LVEKLFLFKQYNACMQLIGWLN-SDPIAVYLKALIYLKSKEAVKAVRCFKTTSL-VLYSHTSQFAVLREFQEIAEKYHHQ 895 (1139)
T ss_dssp HHHHHHHHSCTTHHHHHHHHSC-CCHHHHHHHHHHHHHTTCHHHHHHHHHTCCC-SCTTCCCSCSSHHHHHHHHHTTTSC
T ss_pred HHHHHHHhhhHHHHHHHhhhcc-CCcHHHHHHHHHHHhcCCHHHHHHHHHHHhh-hhcccchhhhhhccccccccccccc
Confidence 4444555555555555443332 3333334455556666666666666655321 1110
Q ss_pred --CHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC---hhHHHHHHHHHHhcCCHHHHHHHHHhCCCC-CCHHHHH
Q 036237 416 --TAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPT---IEHYGCLVDILCRTGYLEEAKSTIESMPMR-PNFVIWM 489 (689)
Q Consensus 416 --~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-p~~~~~~ 489 (689)
-..-|..++..+.+.+.++.+.++-...+...+-.++ ...|..+.+.+...|++++|...+-.++.. --.....
T Consensus 896 ~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~r~~cLr 975 (1139)
T 4fhn_B 896 NLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPLKKSCLL 975 (1139)
T ss_dssp CSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSSCHHHHH
T ss_pred ccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHHHHHHHH
Confidence 1123566667777777777777777666643221111 125777788888888888888888766422 2344566
Q ss_pred HHHHHHHhcCChHH------------HHHHHHH-Hhhc-CCCC-chhHHHHHHHHHhcCCcchHHHH-HHHHH
Q 036237 490 SLLSGARNHGNKDI------------GEYAANN-LIKV-APDT-IGCYVVLSNIYAAAGQWDKVSEV-REMMK 546 (689)
Q Consensus 490 ~ll~~~~~~g~~~~------------a~~~~~~-~~~~-~p~~-~~~~~~L~~~~~~~g~~~~A~~~-~~~m~ 546 (689)
.|+..++..|..+. ...++.. +... +|.+ +..|..|-.-+...|++..|..+ ++...
T Consensus 976 ~LV~~lce~~~~~~L~~lpf~gl~~~Vd~IL~~kAr~~~~~~~~p~Yy~iLYs~ri~r~dyR~AA~vmYe~~~ 1048 (1139)
T 4fhn_B 976 DFVNQLTKQGKINQLLNYSMPTLRQDVDNLLERKAFQMINVESQPCWYNILFSWRYKHQNYRDAAAIIYEKLS 1048 (1139)
T ss_dssp HHHHHHHHHCCHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred HHHHHHHhCCChhhhhCCCCccHHHHHHHHHHHHHHhCCccccCCCHHHHhHhhhhccCChHHHHHHHHHHHH
Confidence 67776666655433 2233221 2222 3333 33444444445678888877655 55554
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=83.64 E-value=5.2 Score=31.00 Aligned_cols=63 Identities=16% Similarity=0.213 Sum_probs=50.3
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHH
Q 036237 397 MATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVD 461 (689)
Q Consensus 397 ~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 461 (689)
+.-+..+-++.+....+-|++....+.|.||.+.+++.-|.++|+.++.+. .+...+|..+++
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~--~~~~~iY~~~lq 87 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA--GPHKEIYPYVIQ 87 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT--TTCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh--cCchhhHHHHHH
Confidence 345666677777777889999999999999999999999999999998643 344566777765
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=83.47 E-value=65 Score=36.37 Aligned_cols=254 Identities=11% Similarity=0.070 Sum_probs=129.8
Q ss_pred HHHhCCChHHHHHHHhhcCcC----C--cchHHHHHHHHHhcCCHHHHHHHHHhcCC-CC----------hHHHHHHHHH
Q 036237 228 GFSKCGKVEIAREIFYRMPNR----N--LVSWNAMINGYMKAGDVDSACELFDDMEI-RD----------LITWNSMIAG 290 (689)
Q Consensus 228 ~~~~~g~~~~A~~~~~~~~~~----~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~~----------~~~~~~li~~ 290 (689)
+....|+.++++.++...... + +.....+.-+...+|.-+++..++..... .+ +..-.++.-|
T Consensus 383 GlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLG 462 (963)
T 4ady_A 383 GVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIG 462 (963)
T ss_dssp HHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHH
T ss_pred hhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHH
Confidence 456678888888888776641 1 22333444455566665566665554331 12 1122333334
Q ss_pred HHHcCC-hHHHHHHHHHhccCCCCcChhh--HH--HHHHHHHcccchhhHHHHHHHHHHhCCccchhHHhHHHhhH--Hh
Q 036237 291 YELNGR-FMEALELLETMLIGDVLPNDAT--LV--SALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMY--SK 363 (689)
Q Consensus 291 ~~~~g~-~~~A~~~~~~m~~~g~~p~~~t--~~--~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~--~~ 363 (689)
++-.|. -+++.+.+..++... +... .. ++...+...|+-+....++..+.+.. +..+...++.++ .-
T Consensus 463 la~~GS~~eev~e~L~~~L~dd---~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~---~e~vrR~aalgLGll~ 536 (963)
T 4ady_A 463 LAAMGSANIEVYEALKEVLYND---SATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ---HGNITRGLAVGLALIN 536 (963)
T ss_dssp HHSTTCCCHHHHHHHHHHHHTC---CHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS---CHHHHHHHHHHHHHHT
T ss_pred HHhcCCCCHHHHHHHHHHHhcC---CHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC---cHHHHHHHHHHHHhhh
Confidence 443443 245666666665432 2111 11 11222345566666666766665432 222333333333 35
Q ss_pred cCCHHHHHHHHHhcCC-CChh-hHH---HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHH
Q 036237 364 CGSIESALTVFRAISK-KKVG-HWT---AMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRR 438 (689)
Q Consensus 364 ~g~~~~A~~~~~~~~~-~~~~-~~~---~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~ 438 (689)
.|+.+.+..+.+.+.. .+.. -|. ++..+|+-.|+.....+++..+.... ..+......+.-++...|+.+.+.+
T Consensus 537 ~g~~e~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~r 615 (963)
T 4ady_A 537 YGRQELADDLITKMLASDESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPR 615 (963)
T ss_dssp TTCGGGGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHH
T ss_pred CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHH
Confidence 5666666666666543 3332 233 34456777788766666888877631 2222222222234444555555666
Q ss_pred HHHHhHHhcCCCCChhHHHHHHHHHHhcCCH-HHHHHHHHhCCCCCCHHHHHH
Q 036237 439 YFNMMINDYGIEPTIEHYGCLVDILCRTGYL-EEAKSTIESMPMRPNFVIWMS 490 (689)
Q Consensus 439 ~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~-~~A~~~~~~~~~~p~~~~~~~ 490 (689)
+++.+.. ...|.+..-.++.-+....|.. .+|.+.+..+...+|..+-..
T Consensus 616 lv~~L~~--~~d~~VR~gAalALGli~aGn~~~~aid~L~~L~~D~d~~Vrq~ 666 (963)
T 4ady_A 616 IVQLLSK--SHNAHVRCGTAFALGIACAGKGLQSAIDVLDPLTKDPVDFVRQA 666 (963)
T ss_dssp HTTTGGG--CSCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHTCSSHHHHHH
T ss_pred HHHHHHh--cCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHccCCCHHHHHH
Confidence 6665553 2345555555555555555553 567777777754555554433
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=82.89 E-value=9.3 Score=32.86 Aligned_cols=25 Identities=12% Similarity=0.033 Sum_probs=13.9
Q ss_pred hhHHHHHHHHHhcCCcchHHHHHHH
Q 036237 520 GCYVVLSNIYAAAGQWDKVSEVREM 544 (689)
Q Consensus 520 ~~~~~L~~~~~~~g~~~~A~~~~~~ 544 (689)
+.-+.++.+|.+.|++++|..+++.
T Consensus 123 Elkykia~C~~~l~~~~~Ai~~Le~ 147 (167)
T 3ffl_A 123 EVKYKLAECYTVLKQDKDAIAILDG 147 (167)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHCCHHHHHHHHhc
Confidence 3444555556666666666655554
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=82.60 E-value=6.6 Score=33.77 Aligned_cols=24 Identities=13% Similarity=0.127 Sum_probs=14.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhCC
Q 036237 457 GCLVDILCRTGYLEEAKSTIESMP 480 (689)
Q Consensus 457 ~~li~~~~~~g~~~~A~~~~~~~~ 480 (689)
--+...|.+.|++++|+.+++.+|
T Consensus 126 ykia~C~~~l~~~~~Ai~~Le~Ip 149 (167)
T 3ffl_A 126 YKLAECYTVLKQDKDAIAILDGIP 149 (167)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTSC
T ss_pred HHHHHHHHHHCCHHHHHHHHhcCC
Confidence 335555666666666666666654
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=82.31 E-value=14 Score=30.43 Aligned_cols=35 Identities=11% Similarity=0.087 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCc
Q 036237 485 FVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTI 519 (689)
Q Consensus 485 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 519 (689)
...+--|.-|+.+.|+++.|.+..+.+++.+|+|.
T Consensus 78 Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~ 112 (134)
T 3o48_A 78 RECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNK 112 (134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCH
Confidence 34556677788899999999999999999999885
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=82.00 E-value=49 Score=33.93 Aligned_cols=95 Identities=12% Similarity=0.082 Sum_probs=70.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHC--CCCCC---HHHHHHHHHHHhccCcHHHHHHHHHHhHHhc-CCC--CC--hh
Q 036237 385 WTAMIVGLGMHGMATQALDLFNKMCRM--GMKPT---AITFIGVLNACSHAGLVNDGRRYFNMMINDY-GIE--PT--IE 454 (689)
Q Consensus 385 ~~~li~~~~~~g~~~~A~~l~~~m~~~--g~~p~---~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~-~~~--p~--~~ 454 (689)
...|...|...|++.+|.+++.++... |..+. ...+...+..|...+++.+|..++.++.... ... |+ ..
T Consensus 140 ~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~ 219 (445)
T 4b4t_P 140 TKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLE 219 (445)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHH
Confidence 456788889999999999999998643 22222 2256667788999999999999998875321 222 22 35
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhC
Q 036237 455 HYGCLVDILCRTGYLEEAKSTIESM 479 (689)
Q Consensus 455 ~~~~li~~~~~~g~~~~A~~~~~~~ 479 (689)
.|.+++..+...+++.+|...|.++
T Consensus 220 ~~~~~~~~~~~e~~y~~a~~~y~e~ 244 (445)
T 4b4t_P 220 YYNLLVKISLHKREYLEVAQYLQEI 244 (445)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 6788899999999999998887765
|
| >3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum} | Back alignment and structure |
|---|
Probab=81.81 E-value=40 Score=32.82 Aligned_cols=166 Identities=14% Similarity=0.056 Sum_probs=86.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHH----HHhccCCCCcChhhHHHHHHHHHcc
Q 036237 254 NAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELL----ETMLIGDVLPNDATLVSALSAVAGL 329 (689)
Q Consensus 254 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~----~~m~~~g~~p~~~t~~~ll~a~~~~ 329 (689)
.++..-|.+.+++++|.+++..- ...+.+.|+...|-++- +-..+.++++|..+...++..+...
T Consensus 39 RTi~~Ry~~~k~y~eAidLL~~G-----------A~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~~~ 107 (336)
T 3lpz_A 39 RLVAARYSKQGNWAAAVDILASV-----------SQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLRLF 107 (336)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTS
T ss_pred HHHHHHHHhhcCHHHHHHHHHHH-----------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhC
Confidence 44556677777777777765331 12234445544433332 3333445666666555555555443
Q ss_pred cchh-----hHHHHHHHHHHhC--CccchhHHhHHHhhHHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHH
Q 036237 330 AVLN-----KGRWMHSYIVKNG--FVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQAL 402 (689)
Q Consensus 330 ~~~~-----~a~~i~~~~~~~g--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 402 (689)
..-+ -..+...+-.+.| ..-|+.....+...|.+.+++.+|+.-|-.-..+.+..+..|+.-+...+...+
T Consensus 108 ~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ilg~~~s~~~~a~mL~ew~~~~~~~e-- 185 (336)
T 3lpz_A 108 QPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLVLGTKESPEVLARMEYEWYKQDESHT-- 185 (336)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHTTSCTTHHHHHHHHHHHHHHTSCGGG--
T ss_pred CCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhcCCchHHHHHHHHHHHHHhcCCcc--
Confidence 3211 1122223333444 345778888899999999999999998843222223455444433333322111
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHH
Q 036237 403 DLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMIN 445 (689)
Q Consensus 403 ~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 445 (689)
+|...-.+++ -|.-.+++..|..+++...+
T Consensus 186 ------------~dlfiaRaVL-~yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 186 ------------APLYCARAVL-PYLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp ------------HHHHHHHHHH-HHHHTTCHHHHHHHHHHHHH
T ss_pred ------------HHHHHHHHHH-HHHHhCCHHHHHHHHHHHHH
Confidence 1111222222 34456788888887766553
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=81.56 E-value=22 Score=29.66 Aligned_cols=69 Identities=10% Similarity=0.015 Sum_probs=42.4
Q ss_pred CChhHHHHHHHHHHhcCCHH---HHHHHHHhC-CCCC--CHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCc
Q 036237 451 PTIEHYGCLVDILCRTGYLE---EAKSTIESM-PMRP--NFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTI 519 (689)
Q Consensus 451 p~~~~~~~li~~~~~~g~~~---~A~~~~~~~-~~~p--~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 519 (689)
|+..+--.+..++.+..+.+ ++..++++. ...| .....--|.-++.+.|+++.|.+..+.+++.+|+|.
T Consensus 37 vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~ 111 (144)
T 1y8m_A 37 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNK 111 (144)
T ss_dssp SCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcH
Confidence 44444444444444444322 333344333 1122 223445567789999999999999999999999885
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=80.96 E-value=53 Score=33.66 Aligned_cols=92 Identities=7% Similarity=-0.023 Sum_probs=59.5
Q ss_pred HHHHHHhccCcHHHHHHHHHHhHHhc-CCCCC---hhHHHHHHHHHHhcCCHHHHHHHHHhCC-----CCCCH----HHH
Q 036237 422 GVLNACSHAGLVNDGRRYFNMMINDY-GIEPT---IEHYGCLVDILCRTGYLEEAKSTIESMP-----MRPNF----VIW 488 (689)
Q Consensus 422 ~ll~a~~~~g~~~~a~~~~~~~~~~~-~~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~~~-----~~p~~----~~~ 488 (689)
.|...+...|++.+|..++..+..+. +..+. +..+..-+.+|...+++..|..++.++. ..+++ ..+
T Consensus 142 ~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~ 221 (445)
T 4b4t_P 142 DLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEYY 221 (445)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHH
Confidence 45566777888888888888776442 22222 4567777788888888888888877651 12221 233
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHhh
Q 036237 489 MSLLSGARNHGNKDIGEYAANNLIK 513 (689)
Q Consensus 489 ~~ll~~~~~~g~~~~a~~~~~~~~~ 513 (689)
...+..+...+++.+|-+.|..+++
T Consensus 222 ~~~~~~~~~e~~y~~a~~~y~e~~~ 246 (445)
T 4b4t_P 222 NLLVKISLHKREYLEVAQYLQEIYQ 246 (445)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 4445555666777777777766654
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=80.44 E-value=82 Score=35.54 Aligned_cols=250 Identities=11% Similarity=0.036 Sum_probs=132.0
Q ss_pred HHHHhcCCHHHHHHHHHhcCC----CC--hHHHHHHHHHHHHcCChHHHHHHHHHhccCCC--Cc---Ch-hh-HHHHHH
Q 036237 258 NGYMKAGDVDSACELFDDMEI----RD--LITWNSMIAGYELNGRFMEALELLETMLIGDV--LP---ND-AT-LVSALS 324 (689)
Q Consensus 258 ~~~~~~g~~~~A~~~~~~~~~----~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~--~p---~~-~t-~~~ll~ 324 (689)
-+....|+.+++..+++.-.. .+ +..-..+.-|....|..++++.++...+...- .- +. .. -..+.-
T Consensus 382 LGlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGL 461 (963)
T 4ady_A 382 LGVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGI 461 (963)
T ss_dssp HHHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHH
T ss_pred hhhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHH
Confidence 345677888999999888664 22 22334445566777777788888777664211 00 01 11 111222
Q ss_pred HHHcccch-hhHHHHHHHHHHhCCc-cchhHHhHHHhhHHhcCCHHHHHHHHHhcCC-CC--hhhHHHHHHHHHHcCCHH
Q 036237 325 AVAGLAVL-NKGRWMHSYIVKNGFV-VDGVLGTLLIQMYSKCGSIESALTVFRAISK-KK--VGHWTAMIVGLGMHGMAT 399 (689)
Q Consensus 325 a~~~~~~~-~~a~~i~~~~~~~g~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~~--~~~~~~li~~~~~~g~~~ 399 (689)
+.+..|.- +++...+..++...-. ......-+|.-.|...|+-+....++..+.+ .+ +.-.-++.-|+...|+.+
T Consensus 462 Gla~~GS~~eev~e~L~~~L~dd~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~~e 541 (963)
T 4ady_A 462 GLAAMGSANIEVYEALKEVLYNDSATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQHGNITRGLAVGLALINYGRQE 541 (963)
T ss_dssp HHHSTTCCCHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCGG
T ss_pred HHHhcCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCChH
Confidence 22223322 3444444444432211 0012223444556677887777777776543 22 222333444555789999
Q ss_pred HHHHHHHHHHHCCCCCCHH-HHH---HHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHH
Q 036237 400 QALDLFNKMCRMGMKPTAI-TFI---GVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKST 475 (689)
Q Consensus 400 ~A~~l~~~m~~~g~~p~~~-t~~---~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 475 (689)
.+..+.+.+... +|.. -|. ++.-+|+..|+.....+++..+..+ ...++.-...+.-++.-.|+.+.+.++
T Consensus 542 ~~~~li~~L~~~---~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d--~~d~VRraAViaLGlI~~g~~e~v~rl 616 (963)
T 4ady_A 542 LADDLITKMLAS---DESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSD--SNDDVRRAAVIALGFVLLRDYTTVPRI 616 (963)
T ss_dssp GGHHHHHHHHHC---SCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHC--SCHHHHHHHHHHHHHHTSSSCSSHHHH
T ss_pred HHHHHHHHHHhC---CCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccC--CcHHHHHHHHHHHHhhccCCHHHHHHH
Confidence 999888888863 3333 333 3345778889988777788888753 223333333333344446666666666
Q ss_pred HHhCCCCCCHHHHH--HHHHHHHhcCCh-HHHHHHHHHHh
Q 036237 476 IESMPMRPNFVIWM--SLLSGARNHGNK-DIGEYAANNLI 512 (689)
Q Consensus 476 ~~~~~~~p~~~~~~--~ll~~~~~~g~~-~~a~~~~~~~~ 512 (689)
++.+....|+.+-. .+.-+....|+. ..+...+..+.
T Consensus 617 v~~L~~~~d~~VR~gAalALGli~aGn~~~~aid~L~~L~ 656 (963)
T 4ady_A 617 VQLLSKSHNAHVRCGTAFALGIACAGKGLQSAIDVLDPLT 656 (963)
T ss_dssp TTTGGGCSCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHH
T ss_pred HHHHHhcCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHc
Confidence 66543223433332 222333333332 45555665554
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 689 | ||||
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 7e-04 | |
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 0.001 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.0 bits (92), Expect = 7e-04
Identities = 34/296 (11%), Positives = 80/296 (27%), Gaps = 13/296 (4%)
Query: 258 NGYMKAGDVDSACELFD---DMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLP 314
+ +AGD ++A E + + + + R + + + P
Sbjct: 7 HREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN--P 64
Query: 315 NDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVF 374
A S L V + H L G +E A+ +
Sbjct: 65 LLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAY 124
Query: 375 RAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKP--TAITFIGVLNACSHAGL 432
+ + + + + + + A+ + + + G
Sbjct: 125 VSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGE 184
Query: 433 VNDGRRYFNMMINDYGIEPT-IEHYGCLVDILCRTGYLEEAKSTIESMP--MRPNFVIWM 489
+ +F + ++P ++ Y L ++L + A + + V+
Sbjct: 185 IWLAIHHFEKAVT---LDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHG 241
Query: 490 SLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMM 545
+L G D+ I++ P Y L+N G + +
Sbjct: 242 NLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTA 297
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 39.7 bits (91), Expect = 0.001
Identities = 25/187 (13%), Positives = 61/187 (32%), Gaps = 10/187 (5%)
Query: 357 LIQMYSKCGSIESALTVFR---AISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGM 413
L +++ G I A+ F + + + + L + +A+ + + +
Sbjct: 175 LGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSP 234
Query: 414 KPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTI-EHYGCLVDILCRTGYLEEA 472
A+ + GL++ + I ++P + Y L + L G + EA
Sbjct: 235 NH-AVVHGNLACVYYEQGLIDLAIDTYRRAIE---LQPHFPDAYCNLANALKEKGSVAEA 290
Query: 473 KSTIESMPMRPNFVIWMSLLSG--ARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYA 530
+ + R GN + ++V P+ + L+++
Sbjct: 291 EDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQ 350
Query: 531 AAGQWDK 537
G+ +
Sbjct: 351 QQGKLQE 357
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 689 | |||
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.88 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.86 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.53 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.45 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.09 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.0 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 98.93 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 98.9 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 98.89 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 98.87 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 98.86 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 98.86 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 98.8 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 98.7 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.48 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.46 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.43 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.41 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.37 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.37 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.32 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.3 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.28 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.28 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.26 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.24 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.14 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.13 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 98.12 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 98.1 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.02 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 97.97 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 97.97 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 97.96 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 97.91 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 97.88 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 97.87 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 97.84 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 97.82 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 97.71 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.65 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 97.61 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 97.56 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 97.53 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 97.45 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 97.38 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 97.36 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 97.23 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 97.19 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 97.06 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 97.06 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 96.89 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 96.83 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 96.66 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 95.59 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 94.55 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 93.51 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 93.07 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 92.09 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 90.91 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 88.37 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 83.26 | |
| d1v54e_ | 105 | Cytochrome c oxidase subunit E {Cow (Bos taurus) [ | 82.89 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.88 E-value=4.6e-20 Score=189.92 Aligned_cols=371 Identities=12% Similarity=0.069 Sum_probs=258.7
Q ss_pred HHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhhCCC---CCeehHHHHHHHHHhCCChH
Q 036237 129 IKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDD---KDLVSWNCLIDGYVKKGEVE 205 (689)
Q Consensus 129 l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~ 205 (689)
...+.+.|++++|.+.++.+++.. +.+..++..+...|.+.|++++|...|++..+ .+..+|..+...|.+.|+++
T Consensus 6 a~~~~~~G~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~g~~~ 84 (388)
T d1w3ba_ 6 AHREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQ 84 (388)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHhhhhcccc
Confidence 345567788888888888887764 44566777788888888888888888876642 24456677777777777777
Q ss_pred HHHHHHhhCCCC---CcchHHHHHHHHHhCCChHHHHHHHhhcCcCCcchHHHHHHHHHhcCCHHHHHHHHHhcCCCChH
Q 036237 206 VAMKLFDEMPDR---DLFSWTCLVDGFSKCGKVEIAREIFYRMPNRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLI 282 (689)
Q Consensus 206 ~A~~~~~~m~~~---d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 282 (689)
+|+..+....+. +...+..........+....+........ ........
T Consensus 85 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------------~~~~~~~~ 136 (388)
T d1w3ba_ 85 EAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSAL----------------------------QYNPDLYC 136 (388)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHH----------------------------HHCTTCTH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccc----------------------------cccccccc
Confidence 777777665442 11222222222222222222222111111 11122333
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHhccCCCCcChhhHHHHHHHHHcccchhhHHHHHHHHHHhCCccchhHHhHHHhhHH
Q 036237 283 TWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYS 362 (689)
Q Consensus 283 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~ 362 (689)
.+..........+....+...+.+..... +-+...+..+...+...|..+.|...+..+++.. +.+...+..+...|.
T Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~ 214 (388)
T d1w3ba_ 137 VRSDLGNLLKALGRLEEAKACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLK 214 (388)
T ss_dssp HHHHHHHHHHTTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred ccccccccccccchhhhhHHHHHHhhccC-cchhHHHHhhcccccccCcHHHHHHHHHHHHHhC-cccHHHHHHHhhhhh
Confidence 33344444455555555555555554321 1123344445555566666666666666666543 234566777788888
Q ss_pred hcCCHHHHHHHHHhcCC---CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCcHHHHHH
Q 036237 363 KCGSIESALTVFRAISK---KKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPT-AITFIGVLNACSHAGLVNDGRR 438 (689)
Q Consensus 363 ~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~ 438 (689)
..|++++|...|++... .+...|..+...+.+.|++++|+..|++..+ +.|+ ..++..+...+...|++++|.+
T Consensus 215 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~~~~~~A~~ 292 (388)
T d1w3ba_ 215 EARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIE--LQPHFPDAYCNLANALKEKGSVAEAED 292 (388)
T ss_dssp TTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TCSSCHHHHHHHHHHHHHHSCHHHHHH
T ss_pred ccccHHHHHHHHHHhHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 88888888888887654 4566788889999999999999999999988 4555 5578888999999999999999
Q ss_pred HHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCC
Q 036237 439 YFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESM-PMRP-NFVIWMSLLSGARNHGNKDIGEYAANNLIKVAP 516 (689)
Q Consensus 439 ~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p 516 (689)
.++.... ..+.+...+..+...|.+.|++++|.+.+++. ...| +..+|..+...+...|++++|+..++++++++|
T Consensus 293 ~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P 370 (388)
T d1w3ba_ 293 CYNTALR--LCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISP 370 (388)
T ss_dssp HHHHHHH--HCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCT
T ss_pred HHHhhhc--cCCccchhhhHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 9999885 34556788899999999999999999999985 4556 566899999999999999999999999999999
Q ss_pred CCchhHHHHHHHHHhcCC
Q 036237 517 DTIGCYVVLSNIYAAAGQ 534 (689)
Q Consensus 517 ~~~~~~~~L~~~~~~~g~ 534 (689)
+++.+|..|+.+|.+.|+
T Consensus 371 ~~~~a~~~lg~~~~~~~D 388 (388)
T d1w3ba_ 371 TFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp TCHHHHHHHHHHHHHTCC
T ss_pred CCHHHHHHHHHHHHHcCC
Confidence 999999999999998875
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.86 E-value=4.1e-19 Score=182.72 Aligned_cols=345 Identities=12% Similarity=0.082 Sum_probs=262.6
Q ss_pred HHHhCCChHHHHHHHhhCCC--C-CcchHHHHHHHHHhCCChHHHHHHHhhcCc--C-CcchHHHHHHHHHhcCCHHHHH
Q 036237 197 GYVKKGEVEVAMKLFDEMPD--R-DLFSWTCLVDGFSKCGKVEIAREIFYRMPN--R-NLVSWNAMINGYMKAGDVDSAC 270 (689)
Q Consensus 197 ~~~~~g~~~~A~~~~~~m~~--~-d~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~ 270 (689)
.+.+.|++++|++.|+++.+ | +...+..+...+.+.|++++|...++++.+ | +..++..+...|.+.|++++|.
T Consensus 8 ~~~~~G~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~g~~~~A~ 87 (388)
T d1w3ba_ 8 REYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAI 87 (388)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHhhhhccccccc
Confidence 34455666666666655543 3 344566666666666777777777666654 2 3456777777888888888888
Q ss_pred HHHHhcCC---CChHHHHHHHHHHHHcCChHHHHHHHHHhccCCCCcChhhHHHHHHHHHcccchhhHHHHHHHHHHhCC
Q 036237 271 ELFDDMEI---RDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGF 347 (689)
Q Consensus 271 ~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~ 347 (689)
..+..... .+...+..........+....+........... .................+....+...........
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 165 (388)
T d1w3ba_ 88 EHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQ- 165 (388)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC-
T ss_pred cccccccccccccccccccccccccccccccccccccccccccc-cccccccccccccccccchhhhhHHHHHHhhccC-
Confidence 87777653 244455555555666666666666655554433 2233334444555566667777777777666654
Q ss_pred ccchhHHhHHHhhHHhcCCHHHHHHHHHhcCC---CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 036237 348 VVDGVLGTLLIQMYSKCGSIESALTVFRAISK---KKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVL 424 (689)
Q Consensus 348 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll 424 (689)
+.+...+..+...+...|++++|...+++... .+...|..+...+...|++++|+..|++..... ..+...+..+.
T Consensus 166 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 244 (388)
T d1w3ba_ 166 PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVHGNLA 244 (388)
T ss_dssp TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred cchhHHHHhhcccccccCcHHHHHHHHHHHHHhCcccHHHHHHHhhhhhccccHHHHHHHHHHhHHHh-hhHHHHHHHHH
Confidence 34567778889999999999999999987654 456789999999999999999999999998853 34566788888
Q ss_pred HHHhccCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCh
Q 036237 425 NACSHAGLVNDGRRYFNMMINDYGIEPT-IEHYGCLVDILCRTGYLEEAKSTIESMP--MRPNFVIWMSLLSGARNHGNK 501 (689)
Q Consensus 425 ~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~ll~~~~~~g~~ 501 (689)
..+...|++++|...|+++.+ +.|+ ...+..+...|...|++++|.+.++... .+.+...+..+...+...|++
T Consensus 245 ~~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 321 (388)
T d1w3ba_ 245 CVYYEQGLIDLAIDTYRRAIE---LQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNI 321 (388)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH---TCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCH
T ss_pred HHHHHCCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccCCccchhhhHHHHHHHHCCCH
Confidence 999999999999999999884 3454 7889999999999999999999998762 345778899999999999999
Q ss_pred HHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCcchHHHHHHHHHh
Q 036237 502 DIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKK 547 (689)
Q Consensus 502 ~~a~~~~~~~~~~~p~~~~~~~~L~~~~~~~g~~~~A~~~~~~m~~ 547 (689)
++|+..+++++++.|+++.++..++.+|.+.|++++|...+++..+
T Consensus 322 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 367 (388)
T d1w3ba_ 322 EEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR 367 (388)
T ss_dssp HHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999998875
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.53 E-value=7.1e-13 Score=132.20 Aligned_cols=195 Identities=13% Similarity=0.095 Sum_probs=141.1
Q ss_pred hhHHhHHHhhHHhcCCHHHHHHHHHhcCC---CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHH--------
Q 036237 351 GVLGTLLIQMYSKCGSIESALTVFRAISK---KKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAIT-------- 419 (689)
Q Consensus 351 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t-------- 419 (689)
...+..+..+|...|++++|...|++..+ .+...|..++..|...|++++|++.+++.... .|+...
T Consensus 53 ~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~ 130 (323)
T d1fcha_ 53 MEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRY--TPAYAHLVTPAEEG 130 (323)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--STTTGGGCC-----
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHhhhccccccccccccccccccccccccccccchhhHHHh--ccchHHHHHhhhhh
Confidence 33444455555555555555555554432 24455666666666666666666666666552 222110
Q ss_pred --------HHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHH
Q 036237 420 --------FIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESM-PMRP-NFVIWM 489 (689)
Q Consensus 420 --------~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~ 489 (689)
....+..+...+..++|...|........-.++..++..+...+.+.|++++|...+++. ...| +...|.
T Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 210 (323)
T d1fcha_ 131 AGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWN 210 (323)
T ss_dssp ----------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred hhhcccccchhhHHHHHHhhHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHhhhhcccccccccccccccchh
Confidence 111222334456778888888888754333445678889999999999999999999986 3334 577899
Q ss_pred HHHHHHHhcCChHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCcchHHHHHHHHHh
Q 036237 490 SLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKK 547 (689)
Q Consensus 490 ~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~~~~~g~~~~A~~~~~~m~~ 547 (689)
.+...+...|++++|+..++++++++|+++.++..|+.+|.+.|++++|.+.+++..+
T Consensus 211 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 268 (323)
T d1fcha_ 211 KLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALN 268 (323)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred hhhhcccccccchhHHHHHHHHHHHhhccHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999998875
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.45 E-value=4.3e-12 Score=126.38 Aligned_cols=264 Identities=14% Similarity=0.101 Sum_probs=169.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcCCC---ChHHHHHHHHHHHHcCChHHHHHHHHHhccCCCCc-ChhhHHHHHHHHHccc
Q 036237 255 AMINGYMKAGDVDSACELFDDMEIR---DLITWNSMIAGYELNGRFMEALELLETMLIGDVLP-NDATLVSALSAVAGLA 330 (689)
Q Consensus 255 ~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~~ 330 (689)
.....|.+.|++++|...|+++.+. ++.+|..+...|...|++++|+..|.+..+. .| +...+..+...+...|
T Consensus 24 ~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~~ 101 (323)
T d1fcha_ 24 EEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLEL--KPDNQTALMALAVSFTNES 101 (323)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhcc--ccccccccccccccccccc
Confidence 3455566777777777777765432 4556777777777777777777777766553 23 2334444455555556
Q ss_pred chhhHHHHHHHHHHhCCccchhHHhHHHhhHHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 036237 331 VLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCR 410 (689)
Q Consensus 331 ~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 410 (689)
++++|...+..+.+..... ............ ..+.......+..+...+.+.+|.+.|.+...
T Consensus 102 ~~~~A~~~~~~~~~~~~~~-~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~ 164 (323)
T d1fcha_ 102 LQRQACEILRDWLRYTPAY-AHLVTPAEEGAG----------------GAGLGPSKRILGSLLSDSLFLEVKELFLAAVR 164 (323)
T ss_dssp CHHHHHHHHHHHHHTSTTT-GGGCC-------------------------------CTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccchhhHHHhccch-HHHHHhhhhhhh----------------hcccccchhhHHHHHHhhHHHHHHHHHHHHHH
Confidence 6666665555555432111 000000000000 00011111122334455677889999988776
Q ss_pred CC-CCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHH
Q 036237 411 MG-MKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPT-IEHYGCLVDILCRTGYLEEAKSTIESM-PMRP-NFV 486 (689)
Q Consensus 411 ~g-~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~ 486 (689)
.. -.++...+..+...+...|++++|+..|+.... ..|+ ...|..+...|.+.|++++|.+.+++. ...| +..
T Consensus 165 ~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~ 241 (323)
T d1fcha_ 165 LDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALS---VRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIR 241 (323)
T ss_dssp HSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred HhhcccccccchhhHHHHHHHHHHhhhhcccccccc---cccccccchhhhhhcccccccchhHHHHHHHHHHHhhccHH
Confidence 32 223456777888889999999999999999884 2344 778899999999999999999999886 3445 577
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchh-----------HHHHHHHHHhcCCcchHHH
Q 036237 487 IWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGC-----------YVVLSNIYAAAGQWDKVSE 540 (689)
Q Consensus 487 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~-----------~~~L~~~~~~~g~~~~A~~ 540 (689)
+|..+..+|...|++++|+..++++++++|++... +..+..++...|+.+.+..
T Consensus 242 a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~l~~al~~~~~~d~~~~ 306 (323)
T d1fcha_ 242 SRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGA 306 (323)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcChhhhhhhHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 89999999999999999999999999999887653 3445666666777665543
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.09 E-value=1.4e-08 Score=101.14 Aligned_cols=258 Identities=12% Similarity=-0.073 Sum_probs=165.0
Q ss_pred HHHHcCChHHHHHHHHHhccCCCCcC----hhhHHHHHHHHHcccchhhHHHHHHHHHHhCC-----ccchhHHhHHHhh
Q 036237 290 GYELNGRFMEALELLETMLIGDVLPN----DATLVSALSAVAGLAVLNKGRWMHSYIVKNGF-----VVDGVLGTLLIQM 360 (689)
Q Consensus 290 ~~~~~g~~~~A~~~~~~m~~~g~~p~----~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~-----~~~~~~~~~li~~ 360 (689)
.+...|++++|++++++.+......+ ...+..+...+...|++++|...+..+.+... ......+..+...
T Consensus 21 ~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 100 (366)
T d1hz4a_ 21 VAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEI 100 (366)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHH
Confidence 34445555555555555443211111 11233333444455555555555554443211 0112334445666
Q ss_pred HHhcCCHHHHHHHHHhcCC-------CC----hhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC----CCHHHHHHHHH
Q 036237 361 YSKCGSIESALTVFRAISK-------KK----VGHWTAMIVGLGMHGMATQALDLFNKMCRMGMK----PTAITFIGVLN 425 (689)
Q Consensus 361 ~~~~g~~~~A~~~~~~~~~-------~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~----p~~~t~~~ll~ 425 (689)
|...|++..|...+..... +. ...+..+...+...|+++.+...+.+....... ....++.....
T Consensus 101 ~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (366)
T d1hz4a_ 101 LFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQ 180 (366)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHHHHHHH
Confidence 7777887777777765432 11 124556777888899999999999887764222 12334555666
Q ss_pred HHhccCcHHHHHHHHHHhHHhcCCCCC-----hhHHHHHHHHHHhcCCHHHHHHHHHhCC-CC-----CCHHHHHHHHHH
Q 036237 426 ACSHAGLVNDGRRYFNMMINDYGIEPT-----IEHYGCLVDILCRTGYLEEAKSTIESMP-MR-----PNFVIWMSLLSG 494 (689)
Q Consensus 426 a~~~~g~~~~a~~~~~~~~~~~~~~p~-----~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~-----p~~~~~~~ll~~ 494 (689)
.+...+...++...+........-... ...+..+...+...|++++|...+++.. .. .....+..+...
T Consensus 181 ~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~ 260 (366)
T d1hz4a_ 181 CSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARA 260 (366)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHH
T ss_pred HHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHHHHHH
Confidence 777888888888888776543222221 2346667788899999999999998862 11 124567778888
Q ss_pred HHhcCChHHHHHHHHHHhh------cCCCCchhHHHHHHHHHhcCCcchHHHHHHHHHh
Q 036237 495 ARNHGNKDIGEYAANNLIK------VAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKK 547 (689)
Q Consensus 495 ~~~~g~~~~a~~~~~~~~~------~~p~~~~~~~~L~~~~~~~g~~~~A~~~~~~m~~ 547 (689)
+...|+++.|...+++++. ..|+...++..++.+|...|++++|.+.+++..+
T Consensus 261 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~ 319 (366)
T d1hz4a_ 261 QILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 319 (366)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 9999999999999998874 3455567889999999999999999999988754
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.00 E-value=4.1e-08 Score=97.68 Aligned_cols=189 Identities=10% Similarity=0.000 Sum_probs=122.7
Q ss_pred HHhHHHhhHHhcCCHHHHHHHHHhcCC--------CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCCC--HH
Q 036237 353 LGTLLIQMYSKCGSIESALTVFRAISK--------KKVGHWTAMIVGLGMHGMATQALDLFNKMCRM----GMKPT--AI 418 (689)
Q Consensus 353 ~~~~li~~~~~~g~~~~A~~~~~~~~~--------~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p~--~~ 418 (689)
.+..+...|...|+++.+...+..... .....+..+...+...++..++...+.+.... +..+. ..
T Consensus 135 ~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~ 214 (366)
T d1hz4a_ 135 LVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISN 214 (366)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHH
T ss_pred HHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHH
Confidence 344556667777777777777765542 12234555666777788888888877765542 11111 12
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCC--ChhHHHHHHHHHHhcCCHHHHHHHHHhC-------CCCCC-HHHH
Q 036237 419 TFIGVLNACSHAGLVNDGRRYFNMMINDYGIEP--TIEHYGCLVDILCRTGYLEEAKSTIESM-------PMRPN-FVIW 488 (689)
Q Consensus 419 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~~-------~~~p~-~~~~ 488 (689)
.+..+...+...|+.++|...++.......-.+ ....+..+...|...|++++|...++++ +..|+ ...|
T Consensus 215 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 294 (366)
T d1hz4a_ 215 ANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNL 294 (366)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHH
Confidence 345555667788899999888887763211111 1344566788888999999998888765 33343 3467
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHhhcCCC---------CchhHHHHHHHHHhcCCcchHHHH
Q 036237 489 MSLLSGARNHGNKDIGEYAANNLIKVAPD---------TIGCYVVLSNIYAAAGQWDKVSEV 541 (689)
Q Consensus 489 ~~ll~~~~~~g~~~~a~~~~~~~~~~~p~---------~~~~~~~L~~~~~~~g~~~~A~~~ 541 (689)
..+...+...|++++|...+++++++.+. ....+..+...+...++.+++..-
T Consensus 295 ~~la~~~~~~g~~~~A~~~l~~Al~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~e~e~~ 356 (366)
T d1hz4a_ 295 LLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVIEGEAMAQQLRQLIQLNTLPELEQH 356 (366)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCCCHHHHTTHHHHHHHHHHHHHTTCSCHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHhhhcCcHHHHHHHHHHHHHHHHHHHhcCCChHHHHH
Confidence 78888899999999999999998875432 122344455666677887777654
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.93 E-value=5.2e-08 Score=95.36 Aligned_cols=185 Identities=8% Similarity=0.001 Sum_probs=128.6
Q ss_pred chhhHHHHHHHHHHhCCccchhHHhHHHhhHHhcCCHHHHHHHHHhcCC---CC-hhhHHHHHHHHHHcCCHHHHHHHHH
Q 036237 331 VLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISK---KK-VGHWTAMIVGLGMHGMATQALDLFN 406 (689)
Q Consensus 331 ~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~-~~~~~~li~~~~~~g~~~~A~~l~~ 406 (689)
..+.+..+++..++...+.+...+...+..+.+.|+++.|..+|+++.. .+ ...|...+....+.|+.++|.++|+
T Consensus 79 ~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~ 158 (308)
T d2onda1 79 FSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFK 158 (308)
T ss_dssp HHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 4566777777777665556667777777888888888888888887654 22 2367788888888888888888888
Q ss_pred HHHHCCCCCCHHHHHHHHH-HHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC----CC
Q 036237 407 KMCRMGMKPTAITFIGVLN-ACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESM----PM 481 (689)
Q Consensus 407 ~m~~~g~~p~~~t~~~ll~-a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~----~~ 481 (689)
++.+.+. .+...|..... -+...|+.+.|..+|+.+... .+.+...+...++.+.+.|++++|..+|++. +.
T Consensus 159 ~al~~~~-~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~--~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~ 235 (308)
T d2onda1 159 KAREDAR-TRHHVYVTAALMEYYCSKDKSVAFKIFELGLKK--YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSL 235 (308)
T ss_dssp HHHTSTT-CCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH--HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSS
T ss_pred HHHHhCC-CcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh--hhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Confidence 8876432 22223333222 233457788888888888753 3344677788888888888888888888775 23
Q ss_pred CC--CHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCC
Q 036237 482 RP--NFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDT 518 (689)
Q Consensus 482 ~p--~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 518 (689)
.| ....|...+.--..+|+.+.+..+.+++.++.|..
T Consensus 236 ~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~~~~~ 274 (308)
T d2onda1 236 PPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREE 274 (308)
T ss_dssp CGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTT
T ss_pred ChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCccc
Confidence 33 24577777777777888888888888887777755
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=98.90 E-value=1.1e-08 Score=97.54 Aligned_cols=195 Identities=10% Similarity=-0.059 Sum_probs=115.3
Q ss_pred HHHHHHHcccchhhHHHHHHHHHHhCCccchhHHhHHHhhHHhcCCHHHHHHHHHhcCC---CChhhHHHHHHHHHHcCC
Q 036237 321 SALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISK---KKVGHWTAMIVGLGMHGM 397 (689)
Q Consensus 321 ~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~ 397 (689)
.+...+.+.|++++|...|..+++.. +.++.+++.+..+|.+.|++++|++.|+++.+ .+..+|..+...|...|+
T Consensus 42 ~~G~~y~~~g~~~~A~~~~~~al~l~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~ 120 (259)
T d1xnfa_ 42 ERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGR 120 (259)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHCCCHHHHHHHHHHhhccC-CCCHHHHhhhchHHHHHHHHHHhhhhhhHHHHHHhhhhhhHHHHHHHHHHHhh
Confidence 33444555555555555555555543 23566677777888888888888888887764 345678888888888888
Q ss_pred HHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCC----HHHH
Q 036237 398 ATQALDLFNKMCRMGMKPT-AITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGY----LEEA 472 (689)
Q Consensus 398 ~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~----~~~A 472 (689)
+++|++.|++..+. .|+ ......+..++.+.+..+....+...... ..+....++ ++..+..... .+.+
T Consensus 121 ~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 194 (259)
T d1xnfa_ 121 DKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK---SDKEQWGWN-IVEFYLGNISEQTLMERL 194 (259)
T ss_dssp HHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH---SCCCSTHHH-HHHHHTTSSCHHHHHHHH
T ss_pred HHHHHHHHHHHHhh--ccccHHHHHHHHHHHHHhhhHHHHHHHHHHhhc---cchhhhhhh-HHHHHHHHHHHHHHHHHH
Confidence 88888888888774 343 33333333444455555555444444442 223222222 2233322222 2222
Q ss_pred HHHHHhC-CCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchhH
Q 036237 473 KSTIESM-PMRPN-FVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCY 522 (689)
Q Consensus 473 ~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 522 (689)
...+... ...|+ ..+|..+...+...|+++.|...+++++..+|++...|
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 246 (259)
T d1xnfa_ 195 KADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVEH 246 (259)
T ss_dssp HHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCHHH
T ss_pred HHHHHHhhhcCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHH
Confidence 2222111 11132 33677788888888999999999999999988775444
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.89 E-value=1.6e-08 Score=99.31 Aligned_cols=189 Identities=10% Similarity=0.079 Sum_probs=124.2
Q ss_pred HHhHHHhhHHhcCCHHHHHHHHHhcCC---CChhhHHHHHHHHHHcC-CHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHH
Q 036237 353 LGTLLIQMYSKCGSIESALTVFRAISK---KKVGHWTAMIVGLGMHG-MATQALDLFNKMCRMGMKPT-AITFIGVLNAC 427 (689)
Q Consensus 353 ~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g-~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~ 427 (689)
+++-+...+.+.+..++|++.++++.+ .+...|+.....+...| ++++|+..+++..+ ..|+ ..+|..+...+
T Consensus 45 a~~~~~~~~~~~e~~~~Al~~~~~ai~lnP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~--~~p~~~~a~~~~~~~~ 122 (315)
T d2h6fa1 45 VYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIE--EQPKNYQVWHHRRVLV 122 (315)
T ss_dssp HHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCchHHHHHHHHHHHHHCCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHH--HHHhhhhHHHHHhHHH
Confidence 334445556666667777777776654 34456777776766655 36777777777766 3444 44666677777
Q ss_pred hccCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCC----
Q 036237 428 SHAGLVNDGRRYFNMMINDYGIEPT-IEHYGCLVDILCRTGYLEEAKSTIESM-PMRP-NFVIWMSLLSGARNHGN---- 500 (689)
Q Consensus 428 ~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~---- 500 (689)
...|++++|+..++.+.+ +.|+ ...|..+...+.+.|++++|++.++++ ...| +...|+.+...+...+.
T Consensus 123 ~~l~~~~eAl~~~~kal~---~dp~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p~n~~a~~~r~~~l~~~~~~~~~ 199 (315)
T d2h6fa1 123 EWLRDPSQELEFIADILN---QDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDR 199 (315)
T ss_dssp HHHTCCTTHHHHHHHHHH---HCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSCSH
T ss_pred HhhccHHHHHHHHhhhhh---hhhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCCccHHHHHHHHHHHHHccccchh
Confidence 777777777777777773 3343 667777777777777777777777765 2334 55567666665555443
Q ss_pred --hHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCcchHHHHHHHHHh
Q 036237 501 --KDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKK 547 (689)
Q Consensus 501 --~~~a~~~~~~~~~~~p~~~~~~~~L~~~~~~~g~~~~A~~~~~~m~~ 547 (689)
+++|+..+.++++++|++..++..++.++...| .+++.+.++...+
T Consensus 200 ~~~~~ai~~~~~al~~~P~~~~~~~~l~~ll~~~~-~~~~~~~~~~~~~ 247 (315)
T d2h6fa1 200 AVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRG-LSKYPNLLNQLLD 247 (315)
T ss_dssp HHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTC-GGGCHHHHHHHHH
T ss_pred hhhHHhHHHHHHHHHhCCCchHHHHHHHHHHHhcC-hHHHHHHHHHHHH
Confidence 467777777888888888777777777765544 4666676666654
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=98.87 E-value=7.5e-09 Score=98.59 Aligned_cols=193 Identities=12% Similarity=0.014 Sum_probs=138.3
Q ss_pred hhHHhHHHhhHHhcCCHHHHHHHHHhcCC---CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHH
Q 036237 351 GVLGTLLIQMYSKCGSIESALTVFRAISK---KKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPT-AITFIGVLNA 426 (689)
Q Consensus 351 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a 426 (689)
..++..+...|.+.|++++|.+.|++... .++.+|+.+..+|.+.|++++|++.|++..+ +.|+ ..++..+..+
T Consensus 37 a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~~~a~~~lg~~ 114 (259)
T d1xnfa_ 37 AQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLE--LDPTYNYAHLNRGIA 114 (259)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHhhhchHHHHHHHHHHhhhhhhHHHH--HHhhhhhhHHHHHHH
Confidence 34666778899999999999999998764 5778999999999999999999999999998 4565 5578888899
Q ss_pred HhccCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhCC-CCCCHHHHHHHHHHHHh----cCC
Q 036237 427 CSHAGLVNDGRRYFNMMINDYGIEPT-IEHYGCLVDILCRTGYLEEAKSTIESMP-MRPNFVIWMSLLSGARN----HGN 500 (689)
Q Consensus 427 ~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~p~~~~~~~ll~~~~~----~g~ 500 (689)
+...|++++|...|+...+. .|+ ......+...+.+.+..+.+..+..... ..++...+.. +..+.. .+.
T Consensus 115 ~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 190 (259)
T d1xnfa_ 115 LYYGGRDKLAQDDLLAFYQD---DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWNI-VEFYLGNISEQTL 190 (259)
T ss_dssp HHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSCCCSTHHHH-HHHHTTSSCHHHH
T ss_pred HHHHhhHHHHHHHHHHHHhh---ccccHHHHHHHHHHHHHhhhHHHHHHHHHHhhccchhhhhhhH-HHHHHHHHHHHHH
Confidence 99999999999999999853 343 4444445555566665555544444331 1122222221 122111 122
Q ss_pred hHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCcchHHHHHHHHHhCC
Q 036237 501 KDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRG 549 (689)
Q Consensus 501 ~~~a~~~~~~~~~~~p~~~~~~~~L~~~~~~~g~~~~A~~~~~~m~~~~ 549 (689)
.+.+...+.......|+...++..|+.+|...|++++|...+++.....
T Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 239 (259)
T d1xnfa_ 191 MERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANN 239 (259)
T ss_dssp HHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhhhcCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC
Confidence 3444444444445667677789999999999999999999999987643
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.86 E-value=4.4e-08 Score=96.09 Aligned_cols=220 Identities=13% Similarity=0.107 Sum_probs=146.8
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHhccCCCCcChhhHHHHHHHHHcccchhhHHHHHHHHHHhCCccchhHHhHHHhhHH
Q 036237 283 TWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYS 362 (689)
Q Consensus 283 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~ 362 (689)
.|+.+...+.+.+.+++|+++++++++. .|+ +...|+.....+.
T Consensus 45 a~~~~~~~~~~~e~~~~Al~~~~~ai~l--nP~----------------------------------~~~a~~~r~~~l~ 88 (315)
T d2h6fa1 45 VYDYFRAVLQRDERSERAFKLTRDAIEL--NAA----------------------------------NYTVWHFRRVLLK 88 (315)
T ss_dssp HHHHHHHHHHHTCCCHHHHHHHHHHHHH--CTT----------------------------------CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCchHHHHHHHHHHHHH--CCC----------------------------------ChHHHHHHHHHHH
Confidence 4555555666666666666666666552 333 3334445555555
Q ss_pred hcC-CHHHHHHHHHhcCC---CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCcHHHHH
Q 036237 363 KCG-SIESALTVFRAISK---KKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPT-AITFIGVLNACSHAGLVNDGR 437 (689)
Q Consensus 363 ~~g-~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~ 437 (689)
..| ++++|...++...+ .+..+|+.+...+.+.|++++|++.++++.+ +.|+ ...|..+...+.+.|++++|+
T Consensus 89 ~l~~~~~eal~~~~~al~~~p~~~~a~~~~~~~~~~l~~~~eAl~~~~kal~--~dp~n~~a~~~~~~~~~~~~~~~~Al 166 (315)
T d2h6fa1 89 SLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILN--QDAKNYHAWQHRQWVIQEFKLWDNEL 166 (315)
T ss_dssp HTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTCCTTHH
T ss_pred HhCcCHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHhhccHHHHHHHHhhhhh--hhhcchHHHHHHHHHHHHHHhhHHHH
Confidence 544 36777777766543 4567788888888888888888888888887 3454 557888888888888888888
Q ss_pred HHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCC------HHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHH
Q 036237 438 RYFNMMINDYGIEPT-IEHYGCLVDILCRTGY------LEEAKSTIESM-PMRP-NFVIWMSLLSGARNHGNKDIGEYAA 508 (689)
Q Consensus 438 ~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~------~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~ 508 (689)
..++.+++ +.|+ ...|+.+..++.+.|. +++|.+.+.++ ...| +...|..+...+. ....+++...+
T Consensus 167 ~~~~~al~---~~p~n~~a~~~r~~~l~~~~~~~~~~~~~~ai~~~~~al~~~P~~~~~~~~l~~ll~-~~~~~~~~~~~ 242 (315)
T d2h6fa1 167 QYVDQLLK---EDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQ-DRGLSKYPNLL 242 (315)
T ss_dssp HHHHHHHH---HCTTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHT-TTCGGGCHHHH
T ss_pred HHHHHHHH---HCCccHHHHHHHHHHHHHccccchhhhhHHhHHHHHHHHHhCCCchHHHHHHHHHHH-hcChHHHHHHH
Confidence 88888884 3453 6677777777766665 57787777664 3345 6777877766654 44568888999
Q ss_pred HHHhhcCCCC--chhHHHHHHHHHhc--CCcchHHHHHHH
Q 036237 509 NNLIKVAPDT--IGCYVVLSNIYAAA--GQWDKVSEVREM 544 (689)
Q Consensus 509 ~~~~~~~p~~--~~~~~~L~~~~~~~--g~~~~A~~~~~~ 544 (689)
+.++++.|+. +..+..++.+|... +..+.+...+++
T Consensus 243 ~~~~~l~~~~~~~~~~~~l~~~y~~~~~~~~~~~~~~~~k 282 (315)
T d2h6fa1 243 NQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDNKEDILNK 282 (315)
T ss_dssp HHHHHHTTTCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHH
T ss_pred HHHHHhCCCcCCHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 9998888764 34456677777543 444455544443
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.86 E-value=5.7e-09 Score=103.81 Aligned_cols=229 Identities=8% Similarity=-0.041 Sum_probs=161.7
Q ss_pred HcCChHHHHHHHHHhccCCCCc-ChhhHHHHHHHHHccc--chhhHHHHHHHHHHhCCccchhHHhHHHhhHHhcCCHHH
Q 036237 293 LNGRFMEALELLETMLIGDVLP-NDATLVSALSAVAGLA--VLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIES 369 (689)
Q Consensus 293 ~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~~--~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~ 369 (689)
..|++++|+.+++...+. .| +...+.....++...+ +.+++...+..+++.........+..+...+...|..++
T Consensus 85 ~~~~~~~al~~~~~~l~~--~pk~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (334)
T d1dcea1 85 SAALVKAELGFLESCLRV--NPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAE 162 (334)
T ss_dssp HHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHH
T ss_pred HHHHHHHHHHHHHHHHHh--CCCcHHHHHHhhHHHHHhccccHHHHHHHHHHHHhhCchhhhhhhhHHHHHHHhccccHH
Confidence 344467777777777653 24 3334444444555544 466777777777776543333333445577778899999
Q ss_pred HHHHHHhcCC---CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHh
Q 036237 370 ALTVFRAISK---KKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMIND 446 (689)
Q Consensus 370 A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~ 446 (689)
|...++.+.. .+..+|+.+...+.+.|++++|...+++... +.|+.. .....+...+..+++...+.....
T Consensus 163 Al~~~~~~i~~~p~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~---~~~~~~~~l~~~~~a~~~~~~~l~- 236 (334)
T d1dcea1 163 ELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPEN--VLLKEL---ELVQNAFFTDPNDQSAWFYHRWLL- 236 (334)
T ss_dssp HHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHH--HHHHHH---HHHHHHHHHCSSCSHHHHHHHHHH-
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhHH--hHHHHH---HHHHHHHHhcchhHHHHHHHHHHH-
Confidence 9999998876 3567899999999999999888766655443 223222 222334455666778888777763
Q ss_pred cCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchhHHH
Q 036237 447 YGIEPTIEHYGCLVDILCRTGYLEEAKSTIESM-PMRP-NFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVV 524 (689)
Q Consensus 447 ~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 524 (689)
.-+++...+..++..+...|+.++|...+.+. +..| +..+|..+...+...|+.++|+..++++++++|++...|..
T Consensus 237 -~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ldP~~~~y~~~ 315 (334)
T d1dcea1 237 -GRAEPLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDD 315 (334)
T ss_dssp -SCCCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHH
T ss_pred -hCcchhhHHHHHHHHHHHHhhHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcccHHHHHH
Confidence 33444666777888888999999999998875 4445 45578889999999999999999999999999998888888
Q ss_pred HHHHHH
Q 036237 525 LSNIYA 530 (689)
Q Consensus 525 L~~~~~ 530 (689)
|...+.
T Consensus 316 L~~~~~ 321 (334)
T d1dcea1 316 LRSKFL 321 (334)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 877665
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.80 E-value=3.3e-07 Score=89.47 Aligned_cols=183 Identities=8% Similarity=-0.017 Sum_probs=143.2
Q ss_pred hcCCHHHHHHHHHhcCC----CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHH
Q 036237 363 KCGSIESALTVFRAISK----KKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRR 438 (689)
Q Consensus 363 ~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~ 438 (689)
..+..++|..+|++... .+...|...+..+...|+.++|..+|+++.+.........|...+..+.+.|.++.|++
T Consensus 76 ~~~~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~ 155 (308)
T d2onda1 76 AKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRM 155 (308)
T ss_dssp HHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHH
T ss_pred cccchHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHH
Confidence 34556888889887653 45668899999999999999999999999874322224478889999999999999999
Q ss_pred HHHHhHHhcCCCCChhHHHHHHHHH-HhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcC
Q 036237 439 YFNMMINDYGIEPTIEHYGCLVDIL-CRTGYLEEAKSTIESMP--MRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVA 515 (689)
Q Consensus 439 ~~~~~~~~~~~~p~~~~~~~li~~~-~~~g~~~~A~~~~~~~~--~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 515 (689)
+|+.+.+ ..+.+...|....... ...|+.+.|..+|+.+- .+.+...|...+.-+...|+.+.|..+|+++++..
T Consensus 156 i~~~al~--~~~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~ 233 (308)
T d2onda1 156 IFKKARE--DARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSG 233 (308)
T ss_dssp HHHHHHT--STTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSS
T ss_pred HHHHHHH--hCCCcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC
Confidence 9999984 2233445555555443 44689999999999872 23467899999999999999999999999999977
Q ss_pred CCCch----hHHHHHHHHHhcCCcchHHHHHHHHHh
Q 036237 516 PDTIG----CYVVLSNIYAAAGQWDKVSEVREMMKK 547 (689)
Q Consensus 516 p~~~~----~~~~L~~~~~~~g~~~~A~~~~~~m~~ 547 (689)
|.++. .+...+..-...|+.+.+..+.+++.+
T Consensus 234 ~~~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~ 269 (308)
T d2onda1 234 SLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFT 269 (308)
T ss_dssp SSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 75543 456666666778999999999998865
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.70 E-value=3.8e-09 Score=105.14 Aligned_cols=251 Identities=9% Similarity=-0.082 Sum_probs=172.1
Q ss_pred HHHHHHHHcCChHHHHHHHHHhccCCCCcChhhH-H---HHHHH-------HHcccchhhHHHHHHHHHHhCCccchhHH
Q 036237 286 SMIAGYELNGRFMEALELLETMLIGDVLPNDATL-V---SALSA-------VAGLAVLNKGRWMHSYIVKNGFVVDGVLG 354 (689)
Q Consensus 286 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~-~---~ll~a-------~~~~~~~~~a~~i~~~~~~~g~~~~~~~~ 354 (689)
.++......+..++|++++++.++ ..|+..+. + .++.. ....+.++++...++.+.+.. +.+...+
T Consensus 34 ~~~~~~~~~~~~~~al~~~~~~l~--~~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~-pk~~~~~ 110 (334)
T d1dcea1 34 AVFQKRQAGELDESVLELTSQILG--ANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTW 110 (334)
T ss_dssp HHHHHHHTTCCSHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHH
T ss_pred HHHHHHhcccccHHHHHHHHHHHH--HCCCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhC-CCcHHHH
Confidence 333333333445788888888876 35665543 1 12222 233455777888888887765 3455566
Q ss_pred hHHHhhHHhcC--CHHHHHHHHHhcCC---CChhhHHH-HHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHH
Q 036237 355 TLLIQMYSKCG--SIESALTVFRAISK---KKVGHWTA-MIVGLGMHGMATQALDLFNKMCRMGMKPT-AITFIGVLNAC 427 (689)
Q Consensus 355 ~~li~~~~~~g--~~~~A~~~~~~~~~---~~~~~~~~-li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~ 427 (689)
..+...+...+ ++++|...+.++.. ++...|.. ....+...+.+++|+..+++.... .|+ ...|..+...+
T Consensus 111 ~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~--~p~~~~a~~~l~~~~ 188 (334)
T d1dcea1 111 HHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITR--NFSNYSSWHYRSCLL 188 (334)
T ss_dssp HHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTT--TCCCHHHHHHHHHHH
T ss_pred HHhhHHHHHhccccHHHHHHHHHHHHhhCchhhhhhhhHHHHHHHhccccHHHHHHHHHHHHc--CCCCHHHHHHHHHHH
Confidence 66666655554 58888888888754 34555544 446777788999999999888774 454 55777778888
Q ss_pred hccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCChHHHH
Q 036237 428 SHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESM--PMRPNFVIWMSLLSGARNHGNKDIGE 505 (689)
Q Consensus 428 ~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~ll~~~~~~g~~~~a~ 505 (689)
...|++++|...++.... +.|+ ...+...+...+..+++...+... ...++...+..+...+...|+.++|.
T Consensus 189 ~~~~~~~~A~~~~~~~~~---~~~~---~~~~~~~~~~l~~~~~a~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~a~ 262 (334)
T d1dcea1 189 PQLHPQPDSGPQGRLPEN---VLLK---ELELVQNAFFTDPNDQSAWFYHRWLLGRAEPLFRCELSVEKSTVLQSELESC 262 (334)
T ss_dssp HHHSCCCCSSSCCSSCHH---HHHH---HHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCSSSCCCCHHHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHhHH---hHHH---HHHHHHHHHHhcchhHHHHHHHHHHHhCcchhhHHHHHHHHHHHHhhHHHHH
Confidence 888888777655544442 1121 122334455666777777666654 22234455667777788889999999
Q ss_pred HHHHHHhhcCCCCchhHHHHHHHHHhcCCcchHHHHHHHHHh
Q 036237 506 YAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKK 547 (689)
Q Consensus 506 ~~~~~~~~~~p~~~~~~~~L~~~~~~~g~~~~A~~~~~~m~~ 547 (689)
..+.+.++.+|+++.++..++.+|...|++++|.+.+++..+
T Consensus 263 ~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ 304 (334)
T d1dcea1 263 KELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKA 304 (334)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHhhCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999876
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.48 E-value=3.9e-07 Score=82.48 Aligned_cols=96 Identities=8% Similarity=0.005 Sum_probs=55.8
Q ss_pred CChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchhHHHHHHH
Q 036237 451 PTIEHYGCLVDILCRTGYLEEAKSTIESM-PMRP-NFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNI 528 (689)
Q Consensus 451 p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~ 528 (689)
|+...+...+..|.+.|++++|+..|.++ ...| ++..|..+..+|.+.|+++.|+..++++++++|+++.+|..++.+
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg~~ 81 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQC 81 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHHHHH
Confidence 44444444555555555555555555543 2222 455566666666666666666666666666666666666666666
Q ss_pred HHhcCCcchHHHHHHHHH
Q 036237 529 YAAAGQWDKVSEVREMMK 546 (689)
Q Consensus 529 ~~~~g~~~~A~~~~~~m~ 546 (689)
|.+.|++++|...+++..
T Consensus 82 ~~~l~~~~~A~~~~~~al 99 (201)
T d2c2la1 82 QLEMESYDEAIANLQRAY 99 (201)
T ss_dssp HHHTTCHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHH
Confidence 666666666666666554
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.46 E-value=2.3e-06 Score=76.60 Aligned_cols=140 Identities=7% Similarity=-0.047 Sum_probs=95.9
Q ss_pred HhhHHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCcHHHH
Q 036237 358 IQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPT-AITFIGVLNACSHAGLVNDG 436 (689)
Q Consensus 358 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a 436 (689)
...+...|+++.|++.|.++..++...|..+...|...|++++|++.|++.++ +.|+ ...|..+..++.+.|++++|
T Consensus 12 g~~~~~~~d~~~Al~~~~~i~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~--ldp~~~~a~~~~g~~~~~~g~~~~A 89 (192)
T d1hh8a_ 12 GVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSIN--RDKHLAVAYFQRGMLYYQTEKYDLA 89 (192)
T ss_dssp HHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHH--HhhhhhhhHHHHHHHHHhhccHHHH
Confidence 34456778888888888888777878888888888888888888888888877 3454 44677777788888888888
Q ss_pred HHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHhhcC
Q 036237 437 RRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPN-FVIWMSLLSGARNHGNKDIGEYAANNLIKVA 515 (689)
Q Consensus 437 ~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 515 (689)
...|++.... .+++... .|...| ...+++ ..++..+..++.+.|+++.|...+++++++.
T Consensus 90 ~~~~~kAl~~--~~~n~~~------~~~~~~-----------~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~ 150 (192)
T d1hh8a_ 90 IKDLKEALIQ--LRGNQLI------DYKILG-----------LQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 150 (192)
T ss_dssp HHHHHHHHHT--TTTCSEE------ECGGGT-----------BCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHh--CccCchH------HHHHhh-----------hhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 8888777631 1121100 000000 001111 2456667778888899999999988888888
Q ss_pred CCC
Q 036237 516 PDT 518 (689)
Q Consensus 516 p~~ 518 (689)
|+.
T Consensus 151 ~~~ 153 (192)
T d1hh8a_ 151 SEP 153 (192)
T ss_dssp CSG
T ss_pred CCc
Confidence 764
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.43 E-value=1.5e-06 Score=70.66 Aligned_cols=103 Identities=10% Similarity=-0.029 Sum_probs=63.5
Q ss_pred HHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCCh
Q 036237 424 LNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESM-PMR-PNFVIWMSLLSGARNHGNK 501 (689)
Q Consensus 424 l~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~ll~~~~~~g~~ 501 (689)
...+...|++++|+..|+..++. -+.+...|..+..+|.+.|++++|+..+.+. ... .+...|..+..++...|++
T Consensus 10 g~~~~~~g~~~eAi~~~~~al~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~ 87 (117)
T d1elwa_ 10 GNKALSVGNIDDALQCYSEAIKL--DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRF 87 (117)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhc--CCcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHHHccCH
Confidence 34455666666666666666631 1223555666666666666666666666654 222 3556667777777777777
Q ss_pred HHHHHHHHHHhhcCCCCchhHHHHHHH
Q 036237 502 DIGEYAANNLIKVAPDTIGCYVVLSNI 528 (689)
Q Consensus 502 ~~a~~~~~~~~~~~p~~~~~~~~L~~~ 528 (689)
++|+..++++++++|+++.++..+.++
T Consensus 88 ~~A~~~~~~a~~~~p~~~~~~~~l~~l 114 (117)
T d1elwa_ 88 EEAKRTYEEGLKHEANNPQLKEGLQNM 114 (117)
T ss_dssp HHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 777777777777777776666555544
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.41 E-value=1.1e-06 Score=71.54 Aligned_cols=91 Identities=12% Similarity=0.119 Sum_probs=82.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCc
Q 036237 458 CLVDILCRTGYLEEAKSTIESM-PMRP-NFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQW 535 (689)
Q Consensus 458 ~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~~~~~g~~ 535 (689)
.-...+.+.|++++|...|++. ...| +...|..+..++...|++++|+..++++++++|+++..|..++.+|...|++
T Consensus 8 ~~g~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~ 87 (117)
T d1elwa_ 8 EKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRF 87 (117)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHHHccCH
Confidence 3467788999999999999986 3334 6779999999999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHhC
Q 036237 536 DKVSEVREMMKKR 548 (689)
Q Consensus 536 ~~A~~~~~~m~~~ 548 (689)
++|...+++..+.
T Consensus 88 ~~A~~~~~~a~~~ 100 (117)
T d1elwa_ 88 EEAKRTYEEGLKH 100 (117)
T ss_dssp HHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHh
Confidence 9999999998863
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.37 E-value=1.8e-06 Score=83.19 Aligned_cols=188 Identities=8% Similarity=-0.040 Sum_probs=128.2
Q ss_pred HHhhHHhcCCHHHHHHHHHhcCC-----CC----hhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCC---CCC--HHHHHH
Q 036237 357 LIQMYSKCGSIESALTVFRAISK-----KK----VGHWTAMIVGLGMHGMATQALDLFNKMCRMGM---KPT--AITFIG 422 (689)
Q Consensus 357 li~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~---~p~--~~t~~~ 422 (689)
....|...|++++|.+.|.++.+ .+ ..+|+.+...|.+.|++++|++.+++..+.-. .+. ..++..
T Consensus 43 aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 122 (290)
T d1qqea_ 43 AATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFE 122 (290)
T ss_dssp HHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHHH
Confidence 45678888888888888887653 22 24788889999999999999999987654211 111 235666
Q ss_pred HHHHHh-ccCcHHHHHHHHHHhHHhc---CCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhCC-CC-------CCH-HHH
Q 036237 423 VLNACS-HAGLVNDGRRYFNMMINDY---GIEPT-IEHYGCLVDILCRTGYLEEAKSTIESMP-MR-------PNF-VIW 488 (689)
Q Consensus 423 ll~a~~-~~g~~~~a~~~~~~~~~~~---~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~-------p~~-~~~ 488 (689)
+...|. ..|++++|...|+....-. +..+. ..++..+...|.+.|++++|.+.++++. .. ... ..+
T Consensus 123 l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (290)
T d1qqea_ 123 LGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYF 202 (290)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHH
T ss_pred HHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHHHHH
Confidence 666664 4699999999998876322 11121 3567889999999999999999998851 11 111 234
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHhhcCCCCch-----hHHHHHHHHHh--cCCcchHHHHHHH
Q 036237 489 MSLLSGARNHGNKDIGEYAANNLIKVAPDTIG-----CYVVLSNIYAA--AGQWDKVSEVREM 544 (689)
Q Consensus 489 ~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~-----~~~~L~~~~~~--~g~~~~A~~~~~~ 544 (689)
...+..+...|+.+.|...+++..+++|..+. .+..|+.+|.. .+++++|...++.
T Consensus 203 ~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~sre~~~l~~l~~a~~~~d~e~~~eai~~y~~ 265 (290)
T d1qqea_ 203 LKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDN 265 (290)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTT
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 45555677889999999999999999885433 34556666654 3457777776653
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.37 E-value=6.7e-06 Score=79.03 Aligned_cols=164 Identities=10% Similarity=-0.016 Sum_probs=98.5
Q ss_pred HHhHHHhhHHhcCCHHHHHHHHHhcCC-----CC----hhhHHHHHHHHHH-cCCHHHHHHHHHHHHHC----CCCCC-H
Q 036237 353 LGTLLIQMYSKCGSIESALTVFRAISK-----KK----VGHWTAMIVGLGM-HGMATQALDLFNKMCRM----GMKPT-A 417 (689)
Q Consensus 353 ~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~-~g~~~~A~~l~~~m~~~----g~~p~-~ 417 (689)
++..+..+|.+.|++++|.+.+++... .+ ...+..+...|.. .|++++|++.|++..+. +..+. .
T Consensus 79 ~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~ 158 (290)
T d1qqea_ 79 TYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSN 158 (290)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhh
Confidence 444455556666666666666654432 11 2345555666644 58888888888776542 21221 2
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCCh-----hHHHHHHHHHHhcCCHHHHHHHHHhCC-CCCC------H
Q 036237 418 ITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTI-----EHYGCLVDILCRTGYLEEAKSTIESMP-MRPN------F 485 (689)
Q Consensus 418 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~-----~~~~~li~~~~~~g~~~~A~~~~~~~~-~~p~------~ 485 (689)
.++..+...+...|++++|..+|+.+.....-.+.. ..+..++..+...|+++.|...+++.. ..|+ .
T Consensus 159 ~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~sre~ 238 (290)
T d1qqea_ 159 KCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRES 238 (290)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------H
T ss_pred hHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCccchHHH
Confidence 356777788888888888888888877432111111 234455566777888999988888862 3232 2
Q ss_pred HHHHHHHHHHHhc--CChHHHHHHHHHHhhcCC
Q 036237 486 VIWMSLLSGARNH--GNKDIGEYAANNLIKVAP 516 (689)
Q Consensus 486 ~~~~~ll~~~~~~--g~~~~a~~~~~~~~~~~p 516 (689)
.....++.++... +.+++|+..|+++.+++|
T Consensus 239 ~~l~~l~~a~~~~d~e~~~eai~~y~~~~~lD~ 271 (290)
T d1qqea_ 239 NFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDK 271 (290)
T ss_dssp HHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCH
Confidence 2445566665542 346778887777776665
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.32 E-value=8.1e-07 Score=71.72 Aligned_cols=89 Identities=15% Similarity=0.060 Sum_probs=79.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCC
Q 036237 457 GCLVDILCRTGYLEEAKSTIESM-PMRP-NFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQ 534 (689)
Q Consensus 457 ~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~~~~~g~ 534 (689)
-.+...+.+.|++++|...|++. ...| ++..|..+..++...|+++.|+..++++++++|+++.++..|+.+|...|+
T Consensus 20 ~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~~~g~ 99 (112)
T d1hxia_ 20 MEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHN 99 (112)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHhhhcccccccchhhhhhhhhhhhhhhHHHhhcccccccccccccccchHHHHHHHHHCCC
Confidence 34567788899999999998886 3345 678999999999999999999999999999999999999999999999999
Q ss_pred cchHHHHHHHH
Q 036237 535 WDKVSEVREMM 545 (689)
Q Consensus 535 ~~~A~~~~~~m 545 (689)
+++|.+.+++.
T Consensus 100 ~~~A~~~l~~~ 110 (112)
T d1hxia_ 100 ANAALASLRAW 110 (112)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999999875
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.30 E-value=2.7e-06 Score=76.16 Aligned_cols=87 Identities=11% Similarity=-0.006 Sum_probs=81.1
Q ss_pred HHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCcchHH
Q 036237 460 VDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVS 539 (689)
Q Consensus 460 i~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~~~~~g~~~~A~ 539 (689)
...+...|++++|++.|.++. +|++.+|..+...+...|+++.|+..|+++++++|+++.+|..++.+|.+.|++++|.
T Consensus 12 g~~~~~~~d~~~Al~~~~~i~-~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~~~a~~~~g~~~~~~g~~~~A~ 90 (192)
T d1hh8a_ 12 GVLAADKKDWKGALDAFSAVQ-DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAI 90 (192)
T ss_dssp HHHHHHTTCHHHHHHHHHTSS-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhhhhhHHHHHHHHHhhccHHHHH
Confidence 456788999999999999874 5788999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHh
Q 036237 540 EVREMMKK 547 (689)
Q Consensus 540 ~~~~~m~~ 547 (689)
..+++...
T Consensus 91 ~~~~kAl~ 98 (192)
T d1hh8a_ 91 KDLKEALI 98 (192)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99998875
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.28 E-value=1.2e-06 Score=79.24 Aligned_cols=114 Identities=9% Similarity=-0.109 Sum_probs=83.3
Q ss_pred CCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHH
Q 036237 415 PTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESM-PMRP-NFVIWMSLL 492 (689)
Q Consensus 415 p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll 492 (689)
|+...+......+...|++++|+..|+.++.. -+.+...|..+..+|.+.|++++|+..|+++ .+.| +...|..+.
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~--~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg 79 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITR--NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLG 79 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHHH
Confidence 55666666777777888888888888777732 2234677788888888888888888888775 4556 466888888
Q ss_pred HHHHhcCChHHHHHHHHHHhhcCCCCchhHHHHHHHHH
Q 036237 493 SGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYA 530 (689)
Q Consensus 493 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~~~ 530 (689)
.++...|++++|+..++++++++|++...+..++..+.
T Consensus 80 ~~~~~l~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~l 117 (201)
T d2c2la1 80 QCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSAL 117 (201)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 88889999999999999988888765544444444433
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.28 E-value=3.6e-06 Score=72.75 Aligned_cols=115 Identities=11% Similarity=0.095 Sum_probs=88.6
Q ss_pred HHHHhccCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCC
Q 036237 424 LNACSHAGLVNDGRRYFNMMINDYGIEPT-IEHYGCLVDILCRTGYLEEAKSTIESM-PMRP-NFVIWMSLLSGARNHGN 500 (689)
Q Consensus 424 l~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~ 500 (689)
...|.+.|++++|...|+++.+ +.|+ ...|..+...|...|++++|...|+++ ...| +...|..++.++...|+
T Consensus 17 gn~~~~~~~y~~A~~~~~~al~---~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~~g~ 93 (159)
T d1a17a_ 17 ANDYFKAKDYENAIKFYSQAIE---LNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGK 93 (159)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH---HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHcCCHHHHHHHhhhccc---cchhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHHHHcCC
Confidence 4466778888888888888774 2344 677888888888888888888888876 3344 56789999999999999
Q ss_pred hHHHHHHHHHHhhcCCCCchhHHHHHHHH--HhcCCcchHHHH
Q 036237 501 KDIGEYAANNLIKVAPDTIGCYVVLSNIY--AAAGQWDKVSEV 541 (689)
Q Consensus 501 ~~~a~~~~~~~~~~~p~~~~~~~~L~~~~--~~~g~~~~A~~~ 541 (689)
+++|...++++++++|+++..+..+..+. ...+.+++|...
T Consensus 94 ~~eA~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~ 136 (159)
T d1a17a_ 94 FRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAG 136 (159)
T ss_dssp HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 99999999999999999988887776554 334455666543
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.26 E-value=6.9e-06 Score=70.90 Aligned_cols=91 Identities=13% Similarity=0.028 Sum_probs=82.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCc
Q 036237 458 CLVDILCRTGYLEEAKSTIESM-PMRP-NFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQW 535 (689)
Q Consensus 458 ~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~~~~~g~~ 535 (689)
.....|.+.|++++|...|++. ...| +...|..+...+...|+++.|+..++++++++|+++.++..++.+|...|++
T Consensus 15 ~~gn~~~~~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~~g~~ 94 (159)
T d1a17a_ 15 TQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKF 94 (159)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHcCCHHHHHHHhhhccccchhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHHHHcCCH
Confidence 3456788999999999999986 3334 6779999999999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHhC
Q 036237 536 DKVSEVREMMKKR 548 (689)
Q Consensus 536 ~~A~~~~~~m~~~ 548 (689)
++|...+++....
T Consensus 95 ~eA~~~~~~a~~~ 107 (159)
T d1a17a_ 95 RAALRDYETVVKV 107 (159)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHc
Confidence 9999999988763
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.24 E-value=3.1e-06 Score=69.07 Aligned_cols=106 Identities=14% Similarity=0.004 Sum_probs=81.7
Q ss_pred HHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCH---HHHHHHHHhC-CCCCCH---HHHHHHHH
Q 036237 421 IGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYL---EEAKSTIESM-PMRPNF---VIWMSLLS 493 (689)
Q Consensus 421 ~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~---~~A~~~~~~~-~~~p~~---~~~~~ll~ 493 (689)
..+++.+...+++++|.+.|+..... -+.++.++..+..+|.+.++. ++|+.+++++ ...|+. .+|..|..
T Consensus 3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~--~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~ 80 (122)
T d1nzna_ 3 EAVLNELVSVEDLLKFEKKFQSEKAA--GSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAV 80 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH--SCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHH
Confidence 35677788888999999999988842 233468888888888876554 4688888885 334433 37888999
Q ss_pred HHHhcCChHHHHHHHHHHhhcCCCCchhHHHHHHH
Q 036237 494 GARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNI 528 (689)
Q Consensus 494 ~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~ 528 (689)
+|.+.|+++.|+..++++++++|++..+...+..+
T Consensus 81 ~y~~~g~~~~A~~~~~~aL~~~P~~~~A~~l~~~I 115 (122)
T d1nzna_ 81 GNYRLKEYEKALKYVRGLLQTEPQNNQAKELERLI 115 (122)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHhhhHHHHHHHHHHHHhCcCCHHHHHHHHHH
Confidence 99999999999999999999999998766555443
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.14 E-value=2.1e-05 Score=68.54 Aligned_cols=110 Identities=5% Similarity=-0.021 Sum_probs=74.5
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 036237 419 TFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNH 498 (689)
Q Consensus 419 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~ 498 (689)
.+......+...|++++|+..|...+.-....+..... + ...... ....+|+.+..+|.+.
T Consensus 15 ~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~--------------~-~~~~~~----~~~~~~~nla~~y~k~ 75 (170)
T d1p5qa1 15 IVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNE--------------E-AQKAQA----LRLASHLNLAMCHLKL 75 (170)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSH--------------H-HHHHHH----HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccchH--------------H-Hhhhch----hHHHHHHHHHHHHHhh
Confidence 34445556777788888888887776432221111000 0 000000 0123566777788888
Q ss_pred CChHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCcchHHHHHHHHHh
Q 036237 499 GNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKK 547 (689)
Q Consensus 499 g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~~~~~g~~~~A~~~~~~m~~ 547 (689)
|+++.|+..++++++++|+++.++..++.+|...|++++|...+++..+
T Consensus 76 ~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~ 124 (170)
T d1p5qa1 76 QAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQ 124 (170)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hhcccccchhhhhhhccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 9999999999999999998888999999999999999999998888776
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.13 E-value=2.1e-05 Score=68.53 Aligned_cols=134 Identities=9% Similarity=-0.052 Sum_probs=99.3
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHH
Q 036237 383 GHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDI 462 (689)
Q Consensus 383 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~ 462 (689)
..+......+.+.|++++|+..|++.+.. -|....+ .+.-......+. ...|+.+..+
T Consensus 14 ~~l~~~G~~~~~~~~~~~Ai~~y~~al~~--~~~~~~~------------~~~~~~~~~~~~--------~~~~~nla~~ 71 (170)
T d1p5qa1 14 TIVKERGTVYFKEGKYKQALLQYKKIVSW--LEYESSF------------SNEEAQKAQALR--------LASHLNLAMC 71 (170)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHH--TTTCCCC------------CSHHHHHHHHHH--------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH--hhhcccc------------chHHHhhhchhH--------HHHHHHHHHH
Confidence 45666778899999999999999998863 1211100 000001111111 2357778889
Q ss_pred HHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCcchH
Q 036237 463 LCRTGYLEEAKSTIESM-PMRP-NFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKV 538 (689)
Q Consensus 463 ~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~~~~~g~~~~A 538 (689)
|.+.|++++|...+++. ...| ++..|..+..++...|+++.|+..++++++++|+++.+...+..+..+.+...+.
T Consensus 72 y~k~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~~~ 149 (170)
T d1p5qa1 72 HLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAR 149 (170)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhhhcccccchhhhhhhccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999876 3445 7779999999999999999999999999999999999999998887766555443
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=98.12 E-value=0.00034 Score=65.53 Aligned_cols=228 Identities=10% Similarity=-0.050 Sum_probs=132.5
Q ss_pred ChHHHHHHHHHHHHcCChHHHHHHHHHhccCCCCcChhhHHHHHHHHHcccchhhHHHHHHHHHHhCCccchhHHhHHHh
Q 036237 280 DLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQ 359 (689)
Q Consensus 280 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~ 359 (689)
|+..+..|...+.+.+++++|+++|++..+.| +...+..+-..+... .|
T Consensus 1 ~p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g---~~~A~~~Lg~~y~~G---------------~~------------- 49 (265)
T d1ouva_ 1 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQG---------------QG------------- 49 (265)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHT---------------SS-------------
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcC---------------CC-------------
Confidence 45566677777777888888888888876654 222222222222220 00
Q ss_pred hHHhcCCHHHHHHHHHhcCC-CChhhHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH----hcc
Q 036237 360 MYSKCGSIESALTVFRAISK-KKVGHWTAMIVGLGM----HGMATQALDLFNKMCRMGMKPTAITFIGVLNAC----SHA 430 (689)
Q Consensus 360 ~~~~~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~----~~~ 430 (689)
...+...|...+..... .+...+..+...+.. .++.+.|...+++....|..+. ...+...+ ...
T Consensus 50 ---~~~d~~~a~~~~~~a~~~~~~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~a~~~g~~~a---~~~l~~~~~~~~~~~ 123 (265)
T d1ouva_ 50 ---VEKNLKKAASFYAKACDLNYSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLKYAEG---CASLGGIYHDGKVVT 123 (265)
T ss_dssp ---SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHH---HHHHHHHHHHCSSSC
T ss_pred ---cchhHHHHHHhhcccccccccchhhccccccccccccchhhHHHHHHHhhhhhhhhhhH---HHhhcccccCCCccc
Confidence 02233334444433332 223333333333332 3456667777777666552211 11111111 123
Q ss_pred CcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHh----cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCChH
Q 036237 431 GLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCR----TGYLEEAKSTIESMPMRPNFVIWMSLLSGARN----HGNKD 502 (689)
Q Consensus 431 g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~----~g~~~ 502 (689)
.....+...+..... ..+...+..|...|.. ..+...+...++......+......|...+.. ..+++
T Consensus 124 ~~~~~a~~~~~~~~~----~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~A~~~lg~~y~~g~~~~~d~~ 199 (265)
T d1ouva_ 124 RDFKKAVEYFTKACD----LNDGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATKNFK 199 (265)
T ss_dssp CCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCCCHH
T ss_pred chhHHHHHHhhhhhc----ccccchhhhhhhhhccCCCcccccccchhhhhccccccccccccchhhhcccCcccccchh
Confidence 445666666665542 2445566666666664 34566666666655333466666666666654 56899
Q ss_pred HHHHHHHHHhhcCCCCchhHHHHHHHHHh----cCCcchHHHHHHHHHhCCC
Q 036237 503 IGEYAANNLIKVAPDTIGCYVVLSNIYAA----AGQWDKVSEVREMMKKRGF 550 (689)
Q Consensus 503 ~a~~~~~~~~~~~p~~~~~~~~L~~~~~~----~g~~~~A~~~~~~m~~~~~ 550 (689)
.|+..|+++.+.+ ++..+..|+.+|.+ ..+.++|.++|++..+.|.
T Consensus 200 ~A~~~~~~aa~~g--~~~a~~~LG~~y~~G~g~~~n~~~A~~~~~kAa~~g~ 249 (265)
T d1ouva_ 200 EALARYSKACELE--NGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGA 249 (265)
T ss_dssp HHHHHHHHHHHTT--CHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTC
T ss_pred hhhhhHhhhhccc--CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHCcC
Confidence 9999999998875 56788999999986 4489999999999888774
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=98.10 E-value=2.9e-05 Score=66.22 Aligned_cols=62 Identities=10% Similarity=0.022 Sum_probs=56.7
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCcchHHHHHHHHHh
Q 036237 486 VIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKK 547 (689)
Q Consensus 486 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~~~~~g~~~~A~~~~~~m~~ 547 (689)
.+|..+..++.+.|+++.|+..++++++++|+++.+|..++.+|...|++++|...|++..+
T Consensus 68 ~~~~Nla~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~ 129 (153)
T d2fbna1 68 SCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAAS 129 (153)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHhcccchhhhhhhccccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHH
Confidence 46778888899999999999999999999999999999999999999999999999988776
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.02 E-value=1.2e-05 Score=65.47 Aligned_cols=92 Identities=8% Similarity=-0.041 Sum_probs=77.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcC---ChHHHHHHHHHHhhcCCCC--chhHHHHHHH
Q 036237 456 YGCLVDILCRTGYLEEAKSTIESM-PMR-PNFVIWMSLLSGARNHG---NKDIGEYAANNLIKVAPDT--IGCYVVLSNI 528 (689)
Q Consensus 456 ~~~li~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~ll~~~~~~g---~~~~a~~~~~~~~~~~p~~--~~~~~~L~~~ 528 (689)
...++..+...+++++|.+.|++. ... .++.++..+..++.+.+ +.+.|+.+++++++.+|.+ +.++..|+.+
T Consensus 2 ~~~l~n~~~~~~~l~~Ae~~Y~~aL~~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~ 81 (122)
T d1nzna_ 2 MEAVLNELVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVG 81 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHH
Confidence 356788888999999999999986 333 46788889998887654 5567999999999988754 3478999999
Q ss_pred HHhcCCcchHHHHHHHHHh
Q 036237 529 YAAAGQWDKVSEVREMMKK 547 (689)
Q Consensus 529 ~~~~g~~~~A~~~~~~m~~ 547 (689)
|.+.|++++|.+.++++.+
T Consensus 82 y~~~g~~~~A~~~~~~aL~ 100 (122)
T d1nzna_ 82 NYRLKEYEKALKYVRGLLQ 100 (122)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhhhHHHHHHHHHHHH
Confidence 9999999999999999987
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.97 E-value=4.4e-06 Score=87.02 Aligned_cols=146 Identities=10% Similarity=-0.040 Sum_probs=74.1
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHH--hccCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCCHHHHHH
Q 036237 398 ATQALDLFNKMCRMGMKPTAITFIGVLNAC--SHAGLVNDGRRYFNMMINDYGIEPT-IEHYGCLVDILCRTGYLEEAKS 474 (689)
Q Consensus 398 ~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~--~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~ 474 (689)
+..+++.+++..+....|+..-....+..+ ...+.++.++..++... ++.|+ ...+..+...+.+.|+.++|..
T Consensus 65 y~~~ie~~r~~~k~~~~~~~~~~~~~~~~~l~~a~~~Y~~ai~~l~~~~---~l~~~~~~~~~~lg~~~~~~~~~~~A~~ 141 (497)
T d1ya0a1 65 FKNQITTLQGQAKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVF---NVDLPCRVKSSQLGIISNKQTHTSAIVK 141 (497)
T ss_dssp THHHHHHHHHHHSCSSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTC---------------------------------
T ss_pred HHHHHHHHHHhcccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---CCChhhHHHHHHhHHHHHhCCCHHHHHH
Confidence 445666666666544344433222222111 12334444444333322 44444 5567777778888888888876
Q ss_pred HHHhCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCcchHHHHHHHHHh
Q 036237 475 TIESMPMRPN-FVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKK 547 (689)
Q Consensus 475 ~~~~~~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~~~~~g~~~~A~~~~~~m~~ 547 (689)
.+.+.- .++ ..++..++..+...|++++|+..|+++++++|++...|..|+.+|...|+..+|...+.+...
T Consensus 142 ~~~~al-~~~~~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~ 214 (497)
T d1ya0a1 142 PQSSSC-SYICQHCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIA 214 (497)
T ss_dssp -CCHHH-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHS
T ss_pred HHHHHh-CCCHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 655431 122 246677888888888888888888888888888888888888888888888888888887764
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.97 E-value=3e-05 Score=67.49 Aligned_cols=64 Identities=3% Similarity=0.001 Sum_probs=56.8
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCcchHHHHHHHHHh
Q 036237 484 NFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKK 547 (689)
Q Consensus 484 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~~~~~g~~~~A~~~~~~m~~ 547 (689)
+...|..+..++.+.|+++.|+..++++++++|+++.+|..++.+|...|++++|.+.+++..+
T Consensus 76 ~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~ 139 (169)
T d1ihga1 76 ALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQE 139 (169)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhhcccchhhhhhhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHH
Confidence 3456778888889999999999999999999999999999999999999999999999998876
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.96 E-value=3.7e-05 Score=63.26 Aligned_cols=92 Identities=11% Similarity=0.093 Sum_probs=72.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCch-------hHHHHH
Q 036237 456 YGCLVDILCRTGYLEEAKSTIESM-PMRP-NFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIG-------CYVVLS 526 (689)
Q Consensus 456 ~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~-------~~~~L~ 526 (689)
+..+...|.+.|++++|...|.+. ...| +...|..+..+|.+.|+++.|+..++++++++|+++. +|..++
T Consensus 7 ~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~lg 86 (128)
T d1elra_ 7 EKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIG 86 (128)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHH
Confidence 345677788888888888888775 2333 6778888999999999999999999999998887654 556677
Q ss_pred HHHHhcCCcchHHHHHHHHHh
Q 036237 527 NIYAAAGQWDKVSEVREMMKK 547 (689)
Q Consensus 527 ~~~~~~g~~~~A~~~~~~m~~ 547 (689)
..+...+++++|.+.+++...
T Consensus 87 ~~~~~~~~~~~A~~~~~kal~ 107 (128)
T d1elra_ 87 NSYFKEEKYKDAIHFYNKSLA 107 (128)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHh
Confidence 778888899999999887654
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=97.91 E-value=7.8e-05 Score=64.61 Aligned_cols=93 Identities=8% Similarity=-0.052 Sum_probs=74.8
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchhHHHHHHHHHh
Q 036237 454 EHYGCLVDILCRTGYLEEAKSTIESM-PM-RPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAA 531 (689)
Q Consensus 454 ~~~~~li~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~~~~ 531 (689)
..|..+..+|.+.|++++|+..+++. .. +.+...|..+..++...|++++|+..++++++++|+++.+...+..+...
T Consensus 65 ~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~ 144 (168)
T d1kt1a1 65 AAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFMCQKK 144 (168)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHhhhcccchhhhhhhhhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 35667888899999999999999886 23 34677999999999999999999999999999999999998888888766
Q ss_pred cCCcc-hHHHHHHHHH
Q 036237 532 AGQWD-KVSEVREMMK 546 (689)
Q Consensus 532 ~g~~~-~A~~~~~~m~ 546 (689)
.+... ...+++..|-
T Consensus 145 ~~~~~e~~kk~~~~~f 160 (168)
T d1kt1a1 145 AKEHNERDRRTYANMF 160 (168)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHH
Confidence 65553 3445555553
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.88 E-value=0.00016 Score=62.60 Aligned_cols=126 Identities=12% Similarity=0.041 Sum_probs=90.4
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHH
Q 036237 386 TAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEP-TIEHYGCLVDILC 464 (689)
Q Consensus 386 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~ 464 (689)
......+...|++++|++.|.+..+. .+ .........+.. .+.| ....|..+..+|.
T Consensus 31 ~~~~~~~~~~~~y~~Ai~~y~~al~~--~~----------~~~~~~~~~~~~----------~~~~~~~~~~~nla~~~~ 88 (169)
T d1ihga1 31 KNIGNTFFKSQNWEMAIKKYTKVLRY--VE----------GSRAAAEDADGA----------KLQPVALSCVLNIGACKL 88 (169)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--HH----------HHHHHSCHHHHG----------GGHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHh--hh----------hhhhhhhhHHHH----------HhChhhHHHHHHHHHHHH
Confidence 34455677788888888888776541 00 000000111100 1122 3456778889999
Q ss_pred hcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcC
Q 036237 465 RTGYLEEAKSTIESM-PMRP-NFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAG 533 (689)
Q Consensus 465 ~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~~~~~g 533 (689)
+.|++++|+..++++ .+.| +...|..+..++...|+++.|+..++++++++|+++.++..|..++.+..
T Consensus 89 ~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n~~~~~~l~~~~~~l~ 159 (169)
T d1ihga1 89 KMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIK 159 (169)
T ss_dssp HTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred hhcccchhhhhhhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence 999999999999886 4455 67799999999999999999999999999999999988888877765433
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=97.87 E-value=0.00017 Score=62.38 Aligned_cols=63 Identities=3% Similarity=-0.071 Sum_probs=58.5
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCcchHHHHHHHHHhC
Q 036237 486 VIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKR 548 (689)
Q Consensus 486 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~~~~~g~~~~A~~~~~~m~~~ 548 (689)
.+|..+..++.+.|++++|+..++++++++|+++.+|..++.+|...|++++|...+++..+.
T Consensus 65 ~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l 127 (168)
T d1kt1a1 65 AAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV 127 (168)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS
T ss_pred HHHHhHHHHHHHhhhcccchhhhhhhhhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 456778888999999999999999999999999999999999999999999999999998763
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.84 E-value=0.0044 Score=59.23 Aligned_cols=168 Identities=10% Similarity=-0.023 Sum_probs=96.7
Q ss_pred CchHHHHHhhcccccCCCCHHHHHHHHhcccCCCChhhHHHHHHHHHhCCCchHHHHHHHHhHhCCCCCCcccHHHHHHH
Q 036237 52 HSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKG 131 (689)
Q Consensus 52 ~~~~~~~ll~~~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~ 131 (689)
|.+--......+-+ .|.++.|..+|..+. -|..++..+.+.+++..|++.+.+.- +..+|..+..+
T Consensus 13 n~~d~~~i~~~c~~--~~lye~A~~lY~~~~------d~~rl~~~~v~l~~~~~avd~~~k~~------~~~~~k~~~~~ 78 (336)
T d1b89a_ 13 NNAHIQQVGDRCYD--EKMYDAAKLLYNNVS------NFGRLASTLVHLGEYQAAVDGARKAN------STRTWKEVCFA 78 (336)
T ss_dssp ------------------CTTTHHHHHHHTT------CHHHHHHHHHTTTCHHHHHHHHHHHT------CHHHHHHHHHH
T ss_pred CcCCHHHHHHHHHH--CCCHHHHHHHHHhCC------CHHHHHHHHHhhccHHHHHHHHHHcC------CHHHHHHHHHH
Confidence 33333344455556 788888888888776 37778888888888888888776542 45577777777
Q ss_pred HHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhhCC---CCCeehHHHHHHHHHhCCChHHHH
Q 036237 132 AARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMD---DKDLVSWNCLIDGYVKKGEVEVAM 208 (689)
Q Consensus 132 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~A~ 208 (689)
|........+ .+...+...++.....++..|-..|.+++...+++... ..+...++.++..|++.+. ++-.
T Consensus 79 l~~~~e~~la-----~i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~~~~~~~~~~~L~~lyak~~~-~kl~ 152 (336)
T d1b89a_ 79 CVDGKEFRLA-----QMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKP-QKMR 152 (336)
T ss_dssp HHHTTCHHHH-----HHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTCH-HHHH
T ss_pred HHhCcHHHHH-----HHHHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcCCccchHHHHHHHHHHHHhCh-HHHH
Confidence 7776655433 22223334455555678888888888888888888543 3455567788888877653 3444
Q ss_pred HHHhhCCCCCcchHHHHHHHHHhCCChHHHHHH
Q 036237 209 KLFDEMPDRDLFSWTCLVDGFSKCGKVEIAREI 241 (689)
Q Consensus 209 ~~~~~m~~~d~~~~~~li~~~~~~g~~~~A~~~ 241 (689)
+.+... .+.....-++..|-+.+.+.++.-+
T Consensus 153 e~l~~~--s~~y~~~k~~~~c~~~~l~~elv~L 183 (336)
T d1b89a_ 153 EHLELF--WSRVNIPKVLRAAEQAHLWAELVFL 183 (336)
T ss_dssp HHHHHH--STTSCHHHHHHHHHTTTCHHHHHHH
T ss_pred HHHHhc--cccCCHHHHHHHHHHcCChHHHHHH
Confidence 444332 1223344455566655555554433
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=97.82 E-value=0.00017 Score=61.25 Aligned_cols=126 Identities=6% Similarity=-0.128 Sum_probs=91.3
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHH
Q 036237 383 GHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDI 462 (689)
Q Consensus 383 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~ 462 (689)
..+...+..+.+.|++.+|+..|.+.... -|..... .-......... ....+|+.+...
T Consensus 18 ~~~~~~G~~~f~~~~y~~A~~~Y~~al~~--~~~~~~~-----------~~~~~~~~~~~--------~~~~~~~Nla~~ 76 (153)
T d2fbna1 18 FDIKEEGNEFFKKNEINEAIVKYKEALDF--FIHTEEW-----------DDQILLDKKKN--------IEISCNLNLATC 76 (153)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TTTCTTC-----------CCHHHHHHHHH--------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhh--Ccchhhh-----------hhHHHHHhhhh--------HHHHHHhhHHHH
Confidence 45677778888899999999999888763 1111000 00000000000 112467788999
Q ss_pred HHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchhHHHHHHHH
Q 036237 463 LCRTGYLEEAKSTIESM-PMRP-NFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIY 529 (689)
Q Consensus 463 ~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~~ 529 (689)
|.+.|++++|++.++++ ...| +..+|..+..++...|+++.|+..++++++++|+++.+...+..+.
T Consensus 77 ~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~~~~~l~~~~ 145 (153)
T d2fbna1 77 YNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCV 145 (153)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred HHHhcccchhhhhhhccccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 99999999999999886 3445 6789999999999999999999999999999999988777665544
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=97.71 E-value=6.6e-05 Score=59.99 Aligned_cols=86 Identities=10% Similarity=0.032 Sum_probs=48.7
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHh
Q 036237 388 MIVGLGMHGMATQALDLFNKMCRMGMKPT-AITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPT-IEHYGCLVDILCR 465 (689)
Q Consensus 388 li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~ 465 (689)
+...+.+.|++++|+..|++... ..|+ ...|..+..++.+.|++++|+..|+...+ +.|+ ...+..+...|..
T Consensus 22 ~g~~~~~~g~~~~A~~~~~~al~--~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~---~~p~~~~a~~~la~~y~~ 96 (112)
T d1hxia_ 22 EGLSMLKLANLAEAALAFEAVCQ--KEPEREEAWRSLGLTQAENEKDGLAIIALNHARM---LDPKDIAVHAALAVSHTN 96 (112)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHhhhcc--cccccchhhhhhhhhhhhhhhHHHhhcccccccc---cccccccchHHHHHHHHH
Confidence 44455566666666666666655 2343 44555555666666666666666666552 2333 4555555556666
Q ss_pred cCCHHHHHHHHHh
Q 036237 466 TGYLEEAKSTIES 478 (689)
Q Consensus 466 ~g~~~~A~~~~~~ 478 (689)
.|++++|.+.+++
T Consensus 97 ~g~~~~A~~~l~~ 109 (112)
T d1hxia_ 97 EHNANAALASLRA 109 (112)
T ss_dssp HHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH
Confidence 6666666555543
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.65 E-value=0.00014 Score=63.57 Aligned_cols=121 Identities=12% Similarity=0.054 Sum_probs=85.0
Q ss_pred HHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCh
Q 036237 422 GVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNK 501 (689)
Q Consensus 422 ~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~ 501 (689)
.........|++++|.+.|.....- .+....- + +...........-++. -....+..+...+...|++
T Consensus 16 ~~g~~~~~~g~~e~A~~~~~~AL~l---~rG~~l~----~-~~~~~w~~~~r~~l~~----~~~~a~~~la~~~~~~g~~ 83 (179)
T d2ff4a2 16 TAGVHAAAAGRFEQASRHLSAALRE---WRGPVLD----D-LRDFQFVEPFATALVE----DKVLAHTAKAEAEIACGRA 83 (179)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTT---CCSSTTG----G-GTTSTTHHHHHHHHHH----HHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhh---Ccccccc----c-CcchHHHHHHHHHHHH----HHHHHHHHHHHHHHHCCCc
Confidence 3445677889999999999888742 2221100 0 0000001111111111 1234678889999999999
Q ss_pred HHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCcchHHHHHHHHH-----hCCCccCC
Q 036237 502 DIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMK-----KRGFRKDP 554 (689)
Q Consensus 502 ~~a~~~~~~~~~~~p~~~~~~~~L~~~~~~~g~~~~A~~~~~~m~-----~~~~~~~~ 554 (689)
++|+..++++++.+|.+...|..|+.+|.+.|++++|.+.|+++. +.|+.|.+
T Consensus 84 ~~Al~~~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~ 141 (179)
T d2ff4a2 84 SAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGP 141 (179)
T ss_dssp HHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCH
T ss_pred hHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCH
Confidence 999999999999999999999999999999999999999999974 35776543
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=97.61 E-value=0.002 Score=59.92 Aligned_cols=91 Identities=10% Similarity=-0.078 Sum_probs=42.8
Q ss_pred hHHHHHHHHHhCCChHHHHHHHhhcCcC-CcchHHHHHHHHHh----cCCHHHHHHHHHhcCCC-ChHHHHHHHHHHHH-
Q 036237 221 SWTCLVDGFSKCGKVEIAREIFYRMPNR-NLVSWNAMINGYMK----AGDVDSACELFDDMEIR-DLITWNSMIAGYEL- 293 (689)
Q Consensus 221 ~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~-~~~~~~~li~~~~~- 293 (689)
.+..|...+.+.++.++|++.|++..+. +...+..|..+|.. ..+...|...+...... +...+..+...+..
T Consensus 4 ~~~~lG~~~~~~~d~~~A~~~~~kAa~~g~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~~~~a~~~l~~~~~~~ 83 (265)
T d1ouva_ 4 ELVGLGAKSYKEKDFTQAKKYFEKACDLKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNYSNGCHLLGNLYYSG 83 (265)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcchhHHHHHHhhcccccccccchhhccccccccc
Confidence 3444444445555555555555555432 23344444444444 34555555555544332 33344444333332
Q ss_pred ---cCChHHHHHHHHHhccCC
Q 036237 294 ---NGRFMEALELLETMLIGD 311 (689)
Q Consensus 294 ---~g~~~~A~~~~~~m~~~g 311 (689)
.++.+.|...++.....|
T Consensus 84 ~~~~~~~~~a~~~~~~a~~~g 104 (265)
T d1ouva_ 84 QGVSQNTNKALQYYSKACDLK 104 (265)
T ss_dssp SSSCCCHHHHHHHHHHHHHTT
T ss_pred cccchhhHHHHHHHhhhhhhh
Confidence 234555666665555444
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.56 E-value=0.00013 Score=61.38 Aligned_cols=126 Identities=13% Similarity=0.136 Sum_probs=72.1
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhcc----------CcHHHHHHHHHHhHHhcCCCCC-hhHHHHH
Q 036237 392 LGMHGMATQALDLFNKMCRMGMKPTA-ITFIGVLNACSHA----------GLVNDGRRYFNMMINDYGIEPT-IEHYGCL 459 (689)
Q Consensus 392 ~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~----------g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l 459 (689)
|-+.+.+++|+..|++..+ +.|+. ..+..+..++... +.+++|+..|+++++ +.|+ ...|..+
T Consensus 7 ~~r~~~fe~A~~~~e~al~--~~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~---l~P~~~~a~~~l 81 (145)
T d1zu2a1 7 FDRILLFEQIRQDAENTYK--SNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALL---IDPKKDEAVWCI 81 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHH---HCTTCHHHHHHH
T ss_pred HHHHccHHHHHHHHHHHHh--hCCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHH---hcchhhHHHhhH
Confidence 4455667777777777766 34543 3555555555432 333455555555552 2333 3444445
Q ss_pred HHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCcchHH
Q 036237 460 VDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVS 539 (689)
Q Consensus 460 i~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~~~~~g~~~~A~ 539 (689)
..+|...|++. ++... ..++++.|...|+++++++|++...+..|... .+|.
T Consensus 82 G~~y~~~g~~~------------~~~~~---------~~~~~~~A~~~~~kal~l~P~~~~~~~~L~~~-------~ka~ 133 (145)
T d1zu2a1 82 GNAYTSFAFLT------------PDETE---------AKHNFDLATQFFQQAVDEQPDNTHYLKSLEMT-------AKAP 133 (145)
T ss_dssp HHHHHHHHHHC------------CCHHH---------HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH-------HTHH
T ss_pred HHHHHHcccch------------hhHHH---------HHHhHHHhhhhhhcccccCCCHHHHHHHHHHH-------HHHH
Confidence 44444433211 11110 11246889999999999999998766666555 4667
Q ss_pred HHHHHHHhCCC
Q 036237 540 EVREMMKKRGF 550 (689)
Q Consensus 540 ~~~~~m~~~~~ 550 (689)
+++.+..+.|+
T Consensus 134 ~~~~e~~k~~~ 144 (145)
T d1zu2a1 134 QLHAEAYKQGL 144 (145)
T ss_dssp HHHHHHHHSSS
T ss_pred HHHHHHHHHhc
Confidence 77777777664
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.53 E-value=0.011 Score=56.24 Aligned_cols=226 Identities=14% Similarity=0.037 Sum_probs=136.5
Q ss_pred HHHhcCCC---chHHHHHHHHHHHhCCCCCchHHHHHhhcccccCCCCHHHHHHHHhcccCCCChhhHHHHHHHHHhCCC
Q 036237 26 NILKFSST---HKETQQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLIKCYVFNQR 102 (689)
Q Consensus 26 ~~l~~c~~---~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~ll~~~~~~g~ 102 (689)
.+...|.. ...+..++..+ .-+..++..|.+ .+++..|.+++.+.. +..+|..+..++.+...
T Consensus 19 ~i~~~c~~~~lye~A~~lY~~~---------~d~~rl~~~~v~--l~~~~~avd~~~k~~---~~~~~k~~~~~l~~~~e 84 (336)
T d1b89a_ 19 QVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVH--LGEYQAAVDGARKAN---STRTWKEVCFACVDGKE 84 (336)
T ss_dssp ----------CTTTHHHHHHHT---------TCHHHHHHHHHT--TTCHHHHHHHHHHHT---CHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHCCCHHHHHHHHHhC---------CCHHHHHHHHHh--hccHHHHHHHHHHcC---CHHHHHHHHHHHHhCcH
Confidence 45566643 56777777643 336678888888 999999999887765 66789999999998876
Q ss_pred chHHHHHHHHhHhCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhh
Q 036237 103 SHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDA 182 (689)
Q Consensus 103 ~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 182 (689)
...+ .+.......++.....++..+-..|.+++...+++..+... ..+...++-|+..|++.+. ++-.+.+..
T Consensus 85 ~~la-----~i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~~-~~~~~~~~~L~~lyak~~~-~kl~e~l~~ 157 (336)
T d1b89a_ 85 FRLA-----QMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKP-QKMREHLEL 157 (336)
T ss_dssp HHHH-----HHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCH-HHHHHHHHH
T ss_pred HHHH-----HHHHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcCC-ccchHHHHHHHHHHHHhCh-HHHHHHHHh
Confidence 6543 22233344566667788999999999999999999876442 5677789999999999754 333333433
Q ss_pred CCCCCeehHHHHHHHHHhCCChHHHHHHHhhCCCC------------CcchHHHHHHHHHhCCChHHHHHHHhhcCcCCc
Q 036237 183 MDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDR------------DLFSWTCLVDGFSKCGKVEIAREIFYRMPNRNL 250 (689)
Q Consensus 183 m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------------d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 250 (689)
.. +.....-++..|-+.+.++++.-++.++... +.......+..+.+..+.+..-++.....+..+
T Consensus 158 ~s--~~y~~~k~~~~c~~~~l~~elv~Ly~~~~~~~~A~~~~i~~~~~~~~~~~f~e~~~k~~N~e~~~~~i~~yL~~~p 235 (336)
T d1b89a_ 158 FW--SRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYLEFKP 235 (336)
T ss_dssp HS--TTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHHHHSTTTTCCHHHHHHHHHHCSSTHHHHHHHHHHHHHCG
T ss_pred cc--ccCCHHHHHHHHHHcCChHHHHHHHHhcCCHHHHHHHHHHcchhhhhHHHHHHHHHccCChHHHHHHHHHHHHcCH
Confidence 22 2233445566666666666666666666542 223333445555555555554444443333333
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHH
Q 036237 251 VSWNAMINGYMKAGDVDSACELFD 274 (689)
Q Consensus 251 ~~~~~li~~~~~~g~~~~A~~~~~ 274 (689)
...+.|+......-+..+..+.|+
T Consensus 236 ~~i~~lL~~v~~~~d~~r~V~~~~ 259 (336)
T d1b89a_ 236 LLLNDLLMVLSPRLDHTRAVNYFS 259 (336)
T ss_dssp GGHHHHHHHHGGGCCHHHHHHHHH
T ss_pred HHHHHHHHHhccCCCHHHHHHHHH
Confidence 344444444444444444444443
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=97.45 E-value=0.00023 Score=60.65 Aligned_cols=63 Identities=8% Similarity=-0.075 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCC-----------CchhHHHHHHHHHhcCCcchHHHHHHHHHh
Q 036237 485 FVIWMSLLSGARNHGNKDIGEYAANNLIKVAPD-----------TIGCYVVLSNIYAAAGQWDKVSEVREMMKK 547 (689)
Q Consensus 485 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~-----------~~~~~~~L~~~~~~~g~~~~A~~~~~~m~~ 547 (689)
...|+.+..++...|+++.|...+++++++.|. ...++..++.+|...|++++|...+++..+
T Consensus 55 a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~ 128 (156)
T d2hr2a1 55 AFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 128 (156)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 356778888888888888888888888765432 123678899999999999999999999764
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.38 E-value=0.00039 Score=53.32 Aligned_cols=73 Identities=11% Similarity=0.021 Sum_probs=54.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhC--------CCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchhHHHHH
Q 036237 456 YGCLVDILCRTGYLEEAKSTIESM--------PMRPN-FVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLS 526 (689)
Q Consensus 456 ~~~li~~~~~~g~~~~A~~~~~~~--------~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~ 526 (689)
+-.+...+.+.|++++|...|++. ...++ ..++..|..++.+.|++++|+..++++++++|+++.++..+.
T Consensus 8 c~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~~a~~Nl~ 87 (95)
T d1tjca_ 8 SFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGNLK 87 (95)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCHHHHHHHH
Confidence 334556666666666666666554 11233 457889999999999999999999999999999998888775
Q ss_pred HH
Q 036237 527 NI 528 (689)
Q Consensus 527 ~~ 528 (689)
..
T Consensus 88 ~~ 89 (95)
T d1tjca_ 88 YF 89 (95)
T ss_dssp HH
T ss_pred HH
Confidence 43
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.36 E-value=0.0011 Score=53.94 Aligned_cols=102 Identities=12% Similarity=-0.018 Sum_probs=56.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHH
Q 036237 385 WTAMIVGLGMHGMATQALDLFNKMCRMGMKPT-AITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPT-IEHYGCLVDI 462 (689)
Q Consensus 385 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~ 462 (689)
+..+...|.+.|++++|+..|++.++. .|+ ...+..+..+|.+.|++++|+..++.++.- .|+ ...+..+
T Consensus 7 ~k~~G~~~~~~~~y~~Ai~~y~~al~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l---~~~~~~~~~~~--- 78 (128)
T d1elra_ 7 EKELGNDAYKKKDFDTALKHYDKAKEL--DPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEV---GRENREDYRQI--- 78 (128)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---HHHSTTCHHHH---
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh--CcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHh---CcccHHHHHHH---
Confidence 445566666667777777777666663 333 445666666666666666666666665521 111 1111111
Q ss_pred HHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCC
Q 036237 463 LCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAP 516 (689)
Q Consensus 463 ~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p 516 (689)
..+|..+...+...++++.|+..+++.+...|
T Consensus 79 ----------------------a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~~ 110 (128)
T d1elra_ 79 ----------------------AKAYARIGNSYFKEEKYKDAIHFYNKSLAEHR 110 (128)
T ss_dssp ----------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred ----------------------HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCC
Confidence 12344455555666666666666666666555
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.23 E-value=0.00013 Score=75.62 Aligned_cols=114 Identities=11% Similarity=-0.030 Sum_probs=61.4
Q ss_pred chhHHhHHHhhHHhcCCHHHHHHHHHhcCCCCh-hhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHH
Q 036237 350 DGVLGTLLIQMYSKCGSIESALTVFRAISKKKV-GHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTA-ITFIGVLNAC 427 (689)
Q Consensus 350 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~ 427 (689)
+...+..+...+.+.|+.++|...+......+. .++..+...+...|++++|+..|++..+ +.|+. ..|+.+...+
T Consensus 119 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~LG~l~~~~~~~~~A~~~y~~A~~--l~P~~~~~~~~Lg~~~ 196 (497)
T d1ya0a1 119 CRVKSSQLGIISNKQTHTSAIVKPQSSSCSYICQHCLVHLGDIARYRNQTSQAESYYRHAAQ--LVPSNGQPYNQLAILA 196 (497)
T ss_dssp ------------------------CCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTBSHHHHHHHHHH
T ss_pred hHHHHHHhHHHHHhCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcccHHHHHHHHHHHHH--HCCCchHHHHHHHHHH
Confidence 345556666777777777777776665544332 3566677777788888888888888777 45553 5777777778
Q ss_pred hccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcC
Q 036237 428 SHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTG 467 (689)
Q Consensus 428 ~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g 467 (689)
...|+..+|...|.+... --+|-...+..|..++.+..
T Consensus 197 ~~~~~~~~A~~~y~ral~--~~~~~~~a~~nL~~~~~~~~ 234 (497)
T d1ya0a1 197 SSKGDHLTTIFYYCRSIA--VKFPFPAASTNLQKALSKAL 234 (497)
T ss_dssp HHTTCHHHHHHHHHHHHS--SSBCCHHHHHHHHHHHHHHT
T ss_pred HHcCCHHHHHHHHHHHHh--CCCCCHHHHHHHHHHHHHhh
Confidence 888888888888877763 33455677777777665443
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.19 E-value=0.00014 Score=61.01 Aligned_cols=96 Identities=8% Similarity=0.038 Sum_probs=63.3
Q ss_pred HhccCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHH
Q 036237 427 CSHAGLVNDGRRYFNMMINDYGIEPT-IEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGE 505 (689)
Q Consensus 427 ~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~ 505 (689)
|.+.+.+++|+..|+...+ +.|+ ...+..+..+|...+++..+.+ ..+.+++|+
T Consensus 7 ~~r~~~fe~A~~~~e~al~---~~P~~~~~~~~~g~~l~~~~~~~~~~e----------------------~~~~~~~Ai 61 (145)
T d1zu2a1 7 FDRILLFEQIRQDAENTYK---SNPLDADNLTRWGGVLLELSQFHSISD----------------------AKQMIQEAI 61 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHHHHHSCHHH----------------------HHHHHHHHH
T ss_pred HHHHccHHHHHHHHHHHHh---hCCcchHHHHHHHHHHHHhhhhhhhhH----------------------HHHHHHHHH
Confidence 3444556666666666552 2233 4455555555544444333322 123467899
Q ss_pred HHHHHHhhcCCCCchhHHHHHHHHHhcCC-----------cchHHHHHHHHHh
Q 036237 506 YAANNLIKVAPDTIGCYVVLSNIYAAAGQ-----------WDKVSEVREMMKK 547 (689)
Q Consensus 506 ~~~~~~~~~~p~~~~~~~~L~~~~~~~g~-----------~~~A~~~~~~m~~ 547 (689)
..++++++++|+++.+|..++.+|...|+ +++|.+.|++..+
T Consensus 62 ~~~~kAl~l~P~~~~a~~~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~ 114 (145)
T d1zu2a1 62 TKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVD 114 (145)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcchhhHHHhhHHHHHHHcccchhhHHHHHHhHHHhhhhhhcccc
Confidence 99999999999999999999999988764 5677777777665
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=97.06 E-value=0.00059 Score=63.44 Aligned_cols=123 Identities=10% Similarity=0.005 Sum_probs=74.3
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCCHHH
Q 036237 394 MHGMATQALDLFNKMCRMGMKPT-AITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPT-IEHYGCLVDILCRTGYLEE 471 (689)
Q Consensus 394 ~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~ 471 (689)
+.|++++|+..+++.++. .|+ ...+..+...++..|++++|...|+...+ +.|+ ...+..+..++...+..++
T Consensus 8 ~~G~l~eAl~~l~~al~~--~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~---l~P~~~~~~~~l~~ll~a~~~~~~ 82 (264)
T d1zbpa1 8 SEGQLQQALELLIEAIKA--SPKDASLRSSFIELLCIDGDFERADEQLMQSIK---LFPEYLPGASQLRHLVKAAQARKD 82 (264)
T ss_dssp TTTCHHHHHHHHHHHHHT--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH---HCGGGHHHHHHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---hCCCcHHHHHHHHHHHHhccccHH
Confidence 457777777777777763 444 45666677777777777777777777763 3454 3444445555544444444
Q ss_pred HHHHHHhC--CCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchh
Q 036237 472 AKSTIESM--PMRPN-FVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGC 521 (689)
Q Consensus 472 A~~~~~~~--~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 521 (689)
+..-.... ...|+ ...+......+...|+.++|...++++.+..|..+..
T Consensus 83 a~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~p~~~~~ 135 (264)
T d1zbpa1 83 FAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGFL 135 (264)
T ss_dssp HTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCCEE
T ss_pred HHHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCcc
Confidence 43322221 11232 2334444556777788888888888888888876543
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=97.06 E-value=0.0021 Score=54.26 Aligned_cols=64 Identities=9% Similarity=0.071 Sum_probs=41.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhC--------CCCCC-----HHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCC
Q 036237 455 HYGCLVDILCRTGYLEEAKSTIESM--------PMRPN-----FVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDT 518 (689)
Q Consensus 455 ~~~~li~~~~~~g~~~~A~~~~~~~--------~~~p~-----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 518 (689)
.|+.+..+|...|++++|...+++. ...++ ...+..+..++...|++++|+..|++++++.|..
T Consensus 57 ~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~~~ 133 (156)
T d2hr2a1 57 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEER 133 (156)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhHHh
Confidence 3455555555566655555555443 11122 2256778888999999999999999999876643
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.89 E-value=0.0024 Score=48.57 Aligned_cols=64 Identities=13% Similarity=-0.012 Sum_probs=54.3
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCC-------chhHHHHHHHHHhcCCcchHHHHHHHHHhC
Q 036237 485 FVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDT-------IGCYVVLSNIYAAAGQWDKVSEVREMMKKR 548 (689)
Q Consensus 485 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~-------~~~~~~L~~~~~~~g~~~~A~~~~~~m~~~ 548 (689)
...+-.++..+.+.|+++.|+..+++++++.|.+ ..++..|+.+|.+.|++++|...++++.+.
T Consensus 5 addc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l 75 (95)
T d1tjca_ 5 AEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (95)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHh
Confidence 3345577888999999999999999999865543 457899999999999999999999998863
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.83 E-value=0.0069 Score=52.24 Aligned_cols=72 Identities=17% Similarity=0.134 Sum_probs=54.4
Q ss_pred hhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHhHH----hcCCCCChhH
Q 036237 382 VGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKP-TAITFIGVLNACSHAGLVNDGRRYFNMMIN----DYGIEPTIEH 455 (689)
Q Consensus 382 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~----~~~~~p~~~~ 455 (689)
+..+..++..+...|++++|+..++++.+ ..| +...|..++.++...|+.++|++.|+.+.+ +.|+.|+..+
T Consensus 67 ~~a~~~la~~~~~~g~~~~Al~~~~~al~--~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l 143 (179)
T d2ff4a2 67 VLAHTAKAEAEIACGRASAVIAELEALTF--EHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 143 (179)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHHHHHHHHCCCchHHHHHHHHHHH--hCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHHH
Confidence 44567778888888888888888888887 345 455788888888888888888888887642 4588887654
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=96.66 E-value=0.00067 Score=63.06 Aligned_cols=119 Identities=13% Similarity=0.117 Sum_probs=85.4
Q ss_pred hccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChHHHH
Q 036237 428 SHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESM-PMRPN-FVIWMSLLSGARNHGNKDIGE 505 (689)
Q Consensus 428 ~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~a~ 505 (689)
.+.|++++|+..+++.++ .-+-+...+..|..+|+..|++++|...++.. ...|+ ...+..+...+...+..+++.
T Consensus 7 L~~G~l~eAl~~l~~al~--~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~~~~~l~~ll~a~~~~~~a~ 84 (264)
T d1zbpa1 7 LSEGQLQQALELLIEAIK--ASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQARKDFA 84 (264)
T ss_dssp TTTTCHHHHHHHHHHHHH--TCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHCCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccccHHHH
Confidence 467999999999999985 33445799999999999999999999999987 34564 445555555554444333332
Q ss_pred HHHHHHhh-cCCCCchhHHHHHHHHHhcCCcchHHHHHHHHHhC
Q 036237 506 YAANNLIK-VAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKR 548 (689)
Q Consensus 506 ~~~~~~~~-~~p~~~~~~~~L~~~~~~~g~~~~A~~~~~~m~~~ 548 (689)
........ .+|+....+...+..+...|+.++|.+.+++..+.
T Consensus 85 ~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~ 128 (264)
T d1zbpa1 85 QGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL 128 (264)
T ss_dssp TSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc
Confidence 22222111 34545556667788899999999999999998764
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=95.59 E-value=0.34 Score=37.30 Aligned_cols=140 Identities=9% Similarity=0.013 Sum_probs=92.2
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHH
Q 036237 393 GMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEA 472 (689)
Q Consensus 393 ~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A 472 (689)
.-.|..++..++..+.... .+..-|+.++--....-+-+-..+.++.+-+-+.+. .++++...
T Consensus 13 ildG~ve~Gveii~k~~~s---s~~~E~NW~ICNiidt~dC~~v~~~Ld~IG~~FDls--------------~C~Nlk~v 75 (161)
T d1wy6a1 13 LLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLD--------------KCQNLKSV 75 (161)
T ss_dssp HHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGG--------------GCSCTHHH
T ss_pred HHhhhHHhHHHHHHHHccc---CCccccceeeeecccccchHHHHHHHHHHhhhcCch--------------hhhcHHHH
Confidence 3356666777777666542 233445544444444444455555555554332222 34444444
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCcchHHHHHHHHHhCCCc
Q 036237 473 KSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFR 551 (689)
Q Consensus 473 ~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~~~~~g~~~~A~~~~~~m~~~~~~ 551 (689)
...+-.+. .+...++--++...++|.-+.-.++++.+++-+..+|.....++++|.+-|...++-+++.+.-++|++
T Consensus 76 v~C~~~~n--~~se~vdlALd~lv~~~kkd~Ld~i~~~l~kn~~i~~~~llkia~A~kkig~~re~nell~~ACe~G~K 152 (161)
T d1wy6a1 76 VECGVINN--TLNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 152 (161)
T ss_dssp HHHHHHTT--CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHhc--chHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhHH
Confidence 44444443 244455666788889999999999999988866668889999999999999999999999999999875
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=94.55 E-value=2.4 Score=41.52 Aligned_cols=54 Identities=9% Similarity=-0.024 Sum_probs=28.5
Q ss_pred HHHHHhcCCHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHhccCC
Q 036237 257 INGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGD 311 (689)
Q Consensus 257 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 311 (689)
+..+.+.++++.....+..-+ .++..--....+....|+..+|...+..+-..|
T Consensus 79 l~~L~~~~~w~~~~~~~~~~p-~~~~~~c~~~~A~~~~g~~~~a~~~~~~lW~~~ 132 (450)
T d1qsaa1 79 VNELARREDWRGLLAFSPEKP-GTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTG 132 (450)
T ss_dssp HHHHHHTTCHHHHHHHCCSCC-SSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCS
T ss_pred HHHHHhccCHHHHHHhccCCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC
Confidence 344555666655554443221 133333345556666777777776666655443
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.51 E-value=0.26 Score=38.35 Aligned_cols=46 Identities=13% Similarity=0.170 Sum_probs=21.7
Q ss_pred HHHHHHHHHHhhcCCCCc-hhHHHHHHHHHhcCCcchHHHHHHHHHh
Q 036237 502 DIGEYAANNLIKVAPDTI-GCYVVLSNIYAAAGQWDKVSEVREMMKK 547 (689)
Q Consensus 502 ~~a~~~~~~~~~~~p~~~-~~~~~L~~~~~~~g~~~~A~~~~~~m~~ 547 (689)
+.|+.+++.+++.+|.+. .++..|+.+|.+.|++++|.+.++.+.+
T Consensus 55 ~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ 101 (124)
T d2pqrb1 55 RLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 101 (124)
T ss_dssp HHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHc
Confidence 344444444444444332 3444455555555555555555544443
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=93.07 E-value=0.53 Score=37.35 Aligned_cols=50 Identities=8% Similarity=-0.075 Sum_probs=36.2
Q ss_pred CChHHHHHHHHHHhhcCCCCchhHHHHHHHHHh----cCCcchHHHHHHHHHhCCC
Q 036237 499 GNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAA----AGQWDKVSEVREMMKKRGF 550 (689)
Q Consensus 499 g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~~~~----~g~~~~A~~~~~~m~~~~~ 550 (689)
.|.+.|...++++.+.. ++.+...|+.+|.. ..+.++|.+++++..+.|.
T Consensus 73 ~d~~~A~~~~~~aa~~g--~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G~ 126 (133)
T d1klxa_ 73 KDLRKAAQYYSKACGLN--DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 126 (133)
T ss_dssp CCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred hhhHHHHHHHhhhhccC--cchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCCC
Confidence 45677777777777653 45677788888876 3577788888888777664
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=92.09 E-value=0.62 Score=36.91 Aligned_cols=76 Identities=5% Similarity=-0.058 Sum_probs=36.2
Q ss_pred CHHHHHHHHHhcCC-CChhhHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc----cCcHHHH
Q 036237 366 SIESALTVFRAISK-KKVGHWTAMIVGLGM----HGMATQALDLFNKMCRMGMKPTAITFIGVLNACSH----AGLVNDG 436 (689)
Q Consensus 366 ~~~~A~~~~~~~~~-~~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~----~g~~~~a 436 (689)
+.++|.+.|++..+ .++.+...|...|.. ..+.++|+++|++..+.| +......|...|.+ ..+.++|
T Consensus 38 ~~~~a~~~~~~aa~~g~~~a~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~~g---~~~a~~~Lg~~y~~G~gv~~d~~~A 114 (133)
T d1klxa_ 38 NKQKLFQYLSKACELNSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQA 114 (133)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHH
T ss_pred CHHHHHHHHhhhhcccchhhhhhHHHhhhhccccchhhHHHHHHHhhhhccC---cchHHHHHHHHHHcCCccCCCHHHH
Confidence 34444444444332 233344444444433 334566666666666654 22233333333333 3456666
Q ss_pred HHHHHHhH
Q 036237 437 RRYFNMMI 444 (689)
Q Consensus 437 ~~~~~~~~ 444 (689)
.++|+...
T Consensus 115 ~~~~~~Aa 122 (133)
T d1klxa_ 115 VKTFEKAC 122 (133)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66666655
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=90.91 E-value=1.2 Score=34.35 Aligned_cols=71 Identities=10% Similarity=-0.014 Sum_probs=45.8
Q ss_pred CChhHHHHHHHHHHhcC---CHHHHHHHHHhC-CCCC-CH-HHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchh
Q 036237 451 PTIEHYGCLVDILCRTG---YLEEAKSTIESM-PMRP-NF-VIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGC 521 (689)
Q Consensus 451 p~~~~~~~li~~~~~~g---~~~~A~~~~~~~-~~~p-~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 521 (689)
|++.+--....++.+.. ++++|..++++. ...| +. ..|..|.-+|.+.|+++.|.+.++++++++|++..+
T Consensus 33 ~s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~qA 109 (124)
T d2pqrb1 33 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQV 109 (124)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred CCcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCcHHH
Confidence 33334334444444443 234555555554 1123 32 466778888999999999999999999999988643
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=88.37 E-value=4.2 Score=31.09 Aligned_cols=59 Identities=12% Similarity=0.099 Sum_probs=37.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhH
Q 036237 385 WTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMI 444 (689)
Q Consensus 385 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~ 444 (689)
.+..++.+.++|+-++-.++++.+.+.+ +|++.....+..||.+.|...++-+++.++-
T Consensus 89 vdlALd~lv~~~kkd~Ld~i~~~l~kn~-~i~~~~llkia~A~kkig~~re~nell~~AC 147 (161)
T d1wy6a1 89 VNKALDILVIQGKRDKLEEIGREILKNN-EVSASILVAIANALRRVGDERDATTLLIEAC 147 (161)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHC--C-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHH
Confidence 4445566666677666666666655533 5666666666677777777777777666665
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=83.26 E-value=21 Score=34.28 Aligned_cols=411 Identities=12% Similarity=-0.016 Sum_probs=203.4
Q ss_pred HHHHHhCCCchHHHHHHHHhHhCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHHhCCCC-chhHHHHHHHHHHhcCC
Q 036237 94 IKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGF-DKFVLSSLVSMYAKFGE 172 (689)
Q Consensus 94 l~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~-~~~~~~~li~~~~~~g~ 172 (689)
+....+.|+..++..+...+.. -| -..|...-..-...++. ...++...+.+..-.| .......-+..+.+.++
T Consensus 13 a~~a~~~~~~~~~~~~~~~L~d---yp-L~pYl~~~~l~~~~~~~-~~~~i~~Fl~~~p~~P~~~~lr~~~l~~L~~~~~ 87 (450)
T d1qsaa1 13 IKQAWDNRQMDVVEQMMPGLKD---YP-LYPYLEYRQITDDLMNQ-PAVTVTNFVRANPTLPPARTLQSRFVNELARRED 87 (450)
T ss_dssp HHHHHHTTCHHHHHHHSGGGTT---ST-THHHHHHHHHHHTGGGC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHCCCHHHHHHHHhhhcC---CC-CHHHHHHHHHHhccccC-CHHHHHHHHHHCCCChhHHHHHHHHHHHHHhccC
Confidence 3445677888888877776632 12 23333332222222221 1223444444432122 12233444667788888
Q ss_pred hHHHHHHHhhCCCCCeehHHHHHHHHHhCCChHHHHHHHhhCC--C-CCcchHHHHHHHHHhCCChHHHHHHHhhcCcCC
Q 036237 173 IDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMP--D-RDLFSWTCLVDGFSKCGKVEIAREIFYRMPNRN 249 (689)
Q Consensus 173 ~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~--~-~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 249 (689)
++.....+..-+ .+...--....+..+.|+.++|...+...= . ........+...+.+.|.+..
T Consensus 88 w~~~~~~~~~~p-~~~~~~c~~~~A~~~~g~~~~a~~~~~~lW~~~~~~p~~c~~l~~~~~~~~~lt~------------ 154 (450)
T d1qsaa1 88 WRGLLAFSPEKP-GTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKSQPNACDKLFSVWRASGKQDP------------ 154 (450)
T ss_dssp HHHHHHHCCSCC-SSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSCCCTHHHHHHHHHHHTTCSCH------------
T ss_pred HHHHHHhccCCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCCCCH------------
Confidence 888777664432 233334456777888899988888776542 1 233444555555544444322
Q ss_pred cchHHHHHHHHHhcCCHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHhccCCCCcChhhHHHHHHHHHcc
Q 036237 250 LVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGL 329 (689)
Q Consensus 250 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~ 329 (689)
..+-.-+......|+...|..+...+...........+..... ...+....... .++......+..+..+.
T Consensus 155 -~~~~~R~~~~l~~~~~~~a~~l~~~l~~~~~~~~~a~~~l~~~---p~~~~~~~~~~-----~~~~~~~~~~~~~l~rl 225 (450)
T d1qsaa1 155 -LAYLERIRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLANN---PNTVLTFARTT-----GATDFTRQMAAVAFASV 225 (450)
T ss_dssp -HHHHHHHHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHHC---GGGHHHHHHHS-----CCCHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHcCChhhHHHHHhhCChhHHHHHHHHHHHHhC---hHhHHHHHhcC-----CCChhhhHHHHHHHHHH
Confidence 1222334555666777777777777665544444444444322 22222222211 12222222223333222
Q ss_pred --cchhhHHHHHHHHHHhCCccchh---HHhHHHhhHHhcCCHHHHHHHHHhcCC--CChhhHHHHHHHHHHcCCHHHHH
Q 036237 330 --AVLNKGRWMHSYIVKNGFVVDGV---LGTLLIQMYSKCGSIESALTVFRAISK--KKVGHWTAMIVGLGMHGMATQAL 402 (689)
Q Consensus 330 --~~~~~a~~i~~~~~~~g~~~~~~---~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~ 402 (689)
.+.+.+...+............. ....+...+...+..+.+...+..... .+.....-.+......+++..+.
T Consensus 226 a~~d~~~a~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~w~~~~al~~~~~~~~~ 305 (450)
T d1qsaa1 226 ARQDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQSTSLIERRVRMALGTGDRRGLN 305 (450)
T ss_dssp HHHCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHTCHHHHH
T ss_pred hccChhHHHHHHHhhhhcccccHHHHHHHHHHHHHHHHHcCchHHHHHHHHhhcccccchHHHHHHHHHHHHcCChHHHH
Confidence 34555555555554433221111 111222333344555666555554432 22222222333445567777777
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHH-HhCCC
Q 036237 403 DLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTI-ESMPM 481 (689)
Q Consensus 403 ~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~-~~~~~ 481 (689)
..|..|.... .-...-.--+..+....|+.++|..+|..+.. .++ .|.-|... +.|..- .+- ...+.
T Consensus 306 ~~~~~l~~~~-~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a~----~~~--fYG~LAa~--~Lg~~~---~~~~~~~~~ 373 (450)
T d1qsaa1 306 TWLARLPMEA-KEKDEWRYWQADLLLERGREAEAKEILHQLMQ----QRG--FYPMVAAQ--RIGEEY---ELKIDKAPQ 373 (450)
T ss_dssp HHHHHSCTTG-GGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT----SCS--HHHHHHHH--HTTCCC---CCCCCCCCS
T ss_pred HHHHhcCccc-ccHHHHHHHHHHHHHHcCChhhHHHHHHHHhc----CCC--hHHHHHHH--HcCCCC---CCCcCCCCc
Confidence 7777664311 11122233455677777888888888777752 132 34333211 111100 000 00011
Q ss_pred CCC-HHH---HHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCcchHHHHHHHH
Q 036237 482 RPN-FVI---WMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMM 545 (689)
Q Consensus 482 ~p~-~~~---~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~~~~~g~~~~A~~~~~~m 545 (689)
.++ ... -..-+..+...|....|...+..+.+.. ++.-...++....+.|.++.|+....+.
T Consensus 374 ~~~~~~~~~~~~~ra~~L~~~g~~~~A~~e~~~l~~~~--~~~~~~~la~lA~~~g~~~~aI~a~~~~ 439 (450)
T d1qsaa1 374 NVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKSK--SKTEQAQLARYAFNNQWWDLSVQATIAG 439 (450)
T ss_dssp CCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--CHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred cHHHhhhcChHHHHHHHHHHcCCchHHHHHHHHHHhCC--CHHHHHHHHHHHHHCCChhHHHHHHHHH
Confidence 111 111 1122445667788888888888776532 3456667788888888888888766554
|
| >d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Cytochrome c oxidase subunit E family: Cytochrome c oxidase subunit E domain: Cytochrome c oxidase subunit E species: Cow (Bos taurus) [TaxId: 9913]
Probab=82.89 E-value=2.8 Score=30.38 Aligned_cols=63 Identities=16% Similarity=0.220 Sum_probs=50.3
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHH
Q 036237 397 MATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVD 461 (689)
Q Consensus 397 ~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 461 (689)
+.-++.+-+..+....+-|++....+.+.||.+.+++.-|.++|+.++.+ ..++...|..+++
T Consensus 21 D~we~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~K--~~~~k~~y~yilq 83 (105)
T d1v54e_ 21 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK--AGPHKEIYPYVIQ 83 (105)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TTTCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH--hcCcHHHHHHHHH
Confidence 44566677777777788999999999999999999999999999998854 3345567776654
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