Citrus Sinensis ID: 036248

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-
Protein Sequence
MTNEDMQTRYRALEEQAALTRAIESRFGPSSYINHRATLFKLTQTSSVEAYQSTFENICNRVTNLHPDAILDCFISGLKPTIQNELAIHKPSNLRDAIALAKLIEDKLQSYNQKSISWKPTNTPIPTTTRNETNIRLNPLLPLPPPNPSNPPKIALPICRLTAVEMQTRQEPSEILQEEEILVEDTVPKQLSAKINNKPLSVLIDTGSTHNYLHPRLAHFLHLAIEKTMSFLVAVGNGERIRSEGHCSKVKFEMQGVGFEADFHILDFSRADAVLGVQWLEKLGKIITDHKALTMEFTYKG
Secondary Structure (PSIPRED)
ccHHHHHHHHHcHHHHHHHHHHHHHHHccccHHHHHHHHHcccccccHHHHHHHHHHHHHHHccccHHHHHHHHHHcccHHHHHHHHHcccccHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHcccccHHHHHHHHHHHcccccccccccccccccEEEEccccccccccHHHHHHcccEEEEEcccEEEEcccccccccEEEEEEEEEEccEEEEEcEEEcccccccEEEccHHHHHHccEEEccccEEEEEEEcc
Secondary Structure Prediction (SSPRO)
cccccccccccccccHHHHHHHHHHHccccccHHHHHHHHHHcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHcccHHHHHHHHccccHcHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccHHccccccccccccccccHHHHccccccccEEEEEEEccEEEEEEEEcccccccccHHHHHHcccccEcccccEEEEccccEEEEEEEcccEEEEEEcEcccccEEEEccccccEEEEHHHHHHccccEEEcccEEEEEEEcc
Coil and Loop (DISEMBL)
MTNEDMQTRYRALEEQAALTRAIesrfgpssyinHRATLFKLTQTSSVEAYQSTFENICNRvtnlhpdaILDCFIsglkptiqnelaihkpsnLRDAIALAKLIEDKLQSYnqksiswkptntpiptttrnetnirlnpllplpppnpsnppkialpicRLTAVEMqtrqepseilqeeeilvedtvpkqlsakinnkplsvlidtgsthnylhpRLAHFLHLAIEKTMSFLVAVGngerirseghcskvkfemqgvgfeadfhildfsrADAVLGVQWLEKLGKIITDHKALTMEFTYKG
Flexible Loop (DISEMBL)
MTNEDMQTRYRALEEQAALTRAIESRFGPSSYINHRATLFKLTQTSSVEAYQSTFENICNRVTNLHPDAILDCFISGLKPTIQNELAIHKPSNLRDAIALAKLIEDKLQSynqksiswkptntpiptttrneTNIRLNPLLPLPPPNPSNPPKIALPICRLTAVEMQTRQEPSEILQEEEILVEDTVPKQLSAKINNKPLSVLIDTGSTHNYLHPRLAHFLHLAIEKTMSFLVAVGNGERIRSEGHCSKVKFEMQGVGFEADFHILDFSRADAVLGVQWLEKLGKiitdhkaltmeftykg
Low Complexity Region (SEG)
MTNEDMQTRYRALEEQAALTRAIESRFGPSSYINHRATLFKLTQTSSVEAYQSTFENICNRVTNLHPDAILDCFISGLKPTIQNELAIHKPSNLRDAIALAKLIEDKLQSYNQKSISWKptntpiptttrnetnirlnpllplpppnpsnppKIALPICRLTAVEMQTRQEPSEILQEEEILVEDTVPKQLSAKINNKPLSVLIDTGSTHNYLHPRLAHFLHLAIEKTMSFLVAVGNGERIRSEGHCSKVKFEMQGVGFEADFHILDFSRADAVLGVQWLEKLGKIITDHKALTMEFTYKG
Disordered region (IsUnstruct)
*********************AIESRFGPSSYINHRATLFKLTQTSSVEAYQSTFENICNRVTNLHPDAILDCFISGLKPTIQNELAIHKPSNLRDAIALAKLIEDKLQSY******************************************IALPICRLTAV****************ILVEDTV***LSAKINNKPLSVLIDTGSTHNYLHPRLAHFLHLAIEKTMSFLVAVGNGERIRSEGHCSKVKFEMQGVGFEADFHILDFSRADAVLGVQWLEKLGKIITDHKALTMEFT***
Disordered Region (DISOPRED)
*TNEDMQTRYRALEEQAALTRAIESRFGPSSYINHRATLFKLTQTSSVEAYQSTFENICNRVTNLHPDAILDCFISGLKPTIQNELAIHKPSNLRDAIALAKLIEDKLQSYNQKSISWKPTNTP*********NIRLNPLLPLPPPNPSNPPKIALPICRLTAVEMQTRQEPSEILQEEEILVEDTVPKQLSAKINNKPLSVLIDTGSTHNYLHPRLAHFLHLAIEKTMSFLVAVGNGERIRSEGHCSKVKFEMQGVGFEADFHILDFSRADAVLGVQWLEKLGKIITDHKALTMEFTYK*
Disordered Region (DISEMBL)
*********YRALEEQAALTRAIESRFGPSSYINHRATLFKLTQTSSVEAYQSTFENICNRVTNLHPDAILDCFISGLKPTIQNELAIHKPSNLRDAIALAKLIEDKLQSYNQKSISWKPTNTPIPTTTRNETNIRLNPLLPLPPPNPSNPPKIALPICRLTAVEMQTRQEPSEILQEEEILVEDTVPKQLSAKINNKPLSVLIDTGSTHNYLHPRLAHFLHLAIEKTMSFLVAVGNGERIRSEGHCSKVKFEMQGVGFEADFHILDFSRADAVLGVQWLEKLGKIITDHKALTMEFTYKG
Disordered Region (DISPRO)
***********ALEEQAALTRAIESRFGPSSYINHRATLFKLTQTSSVEAYQSTFENICNRVTNLHPDAILDCFISGLKPTIQNELAIHKPSNLRDAIALAKLIEDKLQSY******************************P*PPPNPSNPPKIALPI**************SEILQEEEILVEDTVPKQLSAKINNKPLSVLIDTGSTHNYLHPRLAHFLHLAIEKTMSFLVAVGNGERIRSEGHCSKVKFEMQGVGFEADFHILDFSRADAVLGVQWLEKLGKIITDHKALTMEFTYKG
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MTNEDMQTRYRALEEQAALTRAIESRFGPSSYINHRATLFKLTQTSSVEAYQSTFENICNRVTNLHPDAILDCFISGLKPTIQNELAIHKPSNxxxxxxxxxxxxxxxxxxxxxSISWKPTNTPIPTTTRNETNIRLNPLLPLPPPNPSNPPKIALPICRLTAVEMQTRQEPSEILQEEEILVEDTVPKQLSAKINNKPLSVLIDTGSTHNYLHPRLAHFLHLAIEKTMSFLVAVGNGERIRSEGHCSKVKFEMQGVGFEADFHILDFSRADAVLGVQWLEKLGKIITDHKALTMEFTYKG
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	301
356511037	1863	PREDICTED: uncharacterized protein LOC10	0.930	0.150	0.327	2e-37
356514101	1232	PREDICTED: uncharacterized protein LOC10	0.933	0.228	0.346	4e-33
147773289	1575	hypothetical protein VITISV_003835 [Viti	0.863	0.165	0.323	4e-33
147843077	1366	hypothetical protein VITISV_044100 [Viti	0.870	0.191	0.303	2e-32
147774273	1469	hypothetical protein VITISV_026680 [Viti	0.870	0.178	0.306	2e-32
147789424	2822	hypothetical protein VITISV_017554 [Viti	0.873	0.093	0.298	3e-32
147783182	1360	hypothetical protein VITISV_039388 [Viti	0.960	0.212	0.305	3e-32
359479937	787	PREDICTED: uncharacterized protein LOC10	0.980	0.374	0.310	3e-31
147842329	522	hypothetical protein VITISV_041623 [Viti	0.930	0.536	0.307	4e-30
147838975	566	hypothetical protein VITISV_042364 [Viti	0.980	0.521	0.285	2e-27

>gi|356511037|ref|XP_003524238.1| PREDICTED: uncharacterized protein LOC100782971 [Glycine max]

 Score =  162 bits (410), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 108/330 (32%), Positives = 154/330 (46%), Gaps = 50/330 (15%)

Query: 18  ALTRAIESRFGPSSYINHRATLFKLTQTSSVEAYQSTFENICNRVTNLHPDAILDCFISG 77
           AL +AIE+RF PS Y + R  LFKLTQ +SV  Y + FE + NR+  L P  +L CF+SG
Sbjct: 93  ALLQAIETRFAPSFYDDPRGALFKLTQRASVTEYLTEFERLANRIVGLSPPMLLSCFVSG 152

Query: 78  LKPTIQNELAIHKPSNLRDAIALAKLIEDKLQSYNQKSISWKPTNTPIPTTTRNETNIRL 137
           L   I+ E+   +P +L  A+ALA+L EDKL    + S     T+ P P T       + 
Sbjct: 153 LNTEIRREVQAFQPVSLPHAMALARLQEDKLNDRRKHSR----TSLPPPQTPSPSLTTQH 208

Query: 138 NPLLPLPPPNPSNPPKIALPICRLTAVEMQTRQEPSEILQEEEIL--------------- 182
            P    PP     P ++A    +      + +   S   +   +L               
Sbjct: 209 QPPRTKPPFVQRTPEEMAYRREKGLCYNCEEKWSSSHRCKGRVLLFIADSDEASSMDNPS 268

Query: 183 VEDTVPK-------------------------------QLSAKINNKPLSVLIDTGSTHN 211
           +ED  P                                +L   IN+  +++L+D+GSTHN
Sbjct: 269 MEDPAPPTQATLPPFDPTPLLPHISLHAMAGVPATDTFRLYGVINHTRVTILVDSGSTHN 328

Query: 212 YLHPRLAHFLHLAIEKTMSFLVAVGNGERIRSEGHCSKVKFEMQGVGFEADFHILDFSRA 271
           ++ PR+A FL L +E T S  V VGNG  +  +  C      +Q   F     +L  S A
Sbjct: 329 FVQPRIAKFLGLPMEDTTSLQVMVGNGSVLECKQSCPATTLLLQQHSFTVTLRVLPISGA 388

Query: 272 DAVLGVQWLEKLGKIITDHKALTMEFTYKG 301
           D VLGV+WL  LG IITD+ + TM+FT+ G
Sbjct: 389 DVVLGVEWLRTLGPIITDYTSFTMQFTHLG 418

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356514101|ref|XP_003525745.1| PREDICTED: uncharacterized protein LOC100809540 [Glycine max]

 Score =  148 bits (373), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 104/300 (34%), Positives = 146/300 (48%), Gaps = 19/300 (6%)

Query: 8   TRYRALEEQAALTRAIESRFGPSSYINHRATLFKLTQTSSVEAYQSTFENICNRVTNLHP 67
           +R   L    A+ +A+E+RF PS Y +    LFK+ Q  +V  Y S FE + NRV  L P
Sbjct: 54  SRNGFLTSWQAMLQALETRFAPSYYDDPYGALFKIQQRGTVNEYLSEFERLANRVVGLAP 113

Query: 68  DAILDCFISGLKPTIQNELAIHKPSNLRDAIALAKLIEDKLQSYNQKSISWKPTNTPIPT 127
              L CFISGL P +  E+   +P  L  A+ALAKL EDKL    +        N P+  
Sbjct: 114 PLSLSCFISGLNPELHREVQALQPMCLPQAMALAKLQEDKLLDRRRNHRH----NFPVSP 169

Query: 128 TTRNETNIRLNPLLPLPPPNPSNPPKIALPICRLTAVEMQTRQEPSEILQEEEILVE--D 185
           T  +  N   +        + +N P    PI RLT  EM  +++       +E  +    
Sbjct: 170 TPHHPNNPPPSSST-----SATNKP----PIRRLTPEEMALKRDKGLCYHCDEKCLNALS 220

Query: 186 TVPK----QLSAKINNKPLSVLIDTGSTHNYLHPRLAHFLHLAIEKTMSFLVAVGNGERI 241
            +P     ++   +    L++L+D GSTHN++  R+A FL L         V VG+G  I
Sbjct: 221 GMPAPETFRVYGTVRRHQLTILVDGGSTHNFVQLRVAKFLGLPSTPMTPLPVMVGDGGVI 280

Query: 242 RSEGHCSKVKFEMQGVGFEADFHILDFSRADAVLGVQWLEKLGKIITDHKALTMEFTYKG 301
             +    +V   +QG  F  D   L  S AD VLGVQWL  LG + TD+ AL+M FT+ G
Sbjct: 281 HCDCRYPQVSITIQGHQFTTDLFGLPLSGADLVLGVQWLRALGPVTTDYTALSMSFTHLG 340

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147773289|emb|CAN64782.1| hypothetical protein VITISV_003835 [Vitis vinifera]

 Score =  147 bits (372), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 91/281 (32%), Positives = 140/281 (49%), Gaps = 21/281 (7%)

Query: 23  IESRFGPSSYINHRATLFKLTQTSSVEAYQSTFENICNRVTNLHPDAILDCFISGLKPTI 82
           + +RFGPS   +    L ++ Q  S+  YQ  FE + NRV      A++  F+ GL+P I
Sbjct: 482 LWARFGPSECEDFDEALSRIRQVGSLRDYQREFERLGNRVQGWTQRALVGTFMGGLRPNI 541

Query: 83  QNELAIHKPSNLRDAIALAKLIEDKLQSYNQKSISWKPTNTPIPTTTRNETNIRLNPLLP 142
            + + + KP  L+++I LA++ +D+L    +      PT  P                L 
Sbjct: 542 SDGIRMFKPQTLKESINLARMKDDQLARQRRFGRLAPPTRAP----------------LT 585

Query: 143 LPPPNPSNPPKIALPICRLTAVEMQTRQEPS-EILQEEEILVEDTVPK--QLSAKINNKP 199
           LP    + PP    P+             P  EI      L+  TVPK  ++ A+I    
Sbjct: 586 LPFTQLATPPAPVAPVTEEQPAGQNHEGSPGLEITLHA--LMGWTVPKTMRIVARIGAHD 643

Query: 200 LSVLIDTGSTHNYLHPRLAHFLHLAIEKTMSFLVAVGNGERIRSEGHCSKVKFEMQGVGF 259
           + VL+D+GSTHN++  R+A+ L L +  T SF+V V NGE +R +G   +V+  +QG  F
Sbjct: 644 VVVLVDSGSTHNFISERMANLLRLPVVPTESFMVRVANGENLRCQGRFEEVQINLQGTIF 703

Query: 260 EADFHILDFSRADAVLGVQWLEKLGKIITDHKALTMEFTYK 300
               + L  +  D VLG+QWLE LG +  D + LTMEF ++
Sbjct: 704 SLTLYSLPLTGLDIVLGIQWLELLGSVGCDWRELTMEFMWE 744

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147843077|emb|CAN83300.1| hypothetical protein VITISV_044100 [Vitis vinifera]

 Score =  145 bits (366), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 103/339 (30%), Positives = 152/339 (44%), Gaps = 77/339 (22%)

Query: 18  ALTRAIESRFGPSSYINHRATLFKLTQTSSVEAYQSTFENICNRVTNLHPDAILDCFISG 77
              RA+++RFG S Y +    L +L QTS+VE Y+S FE + N++  L     L CF+SG
Sbjct: 119 GFVRALQTRFGSSPYEDPMEALIRLKQTSTVEDYKSQFEALSNQLRGLAESYKLSCFLSG 178

Query: 78  LKPTIQNELAIHKPSNLRDAIALAKLIEDKLQSYNQKSISWKPTNTPIPTTTRNETNIRL 137
           L+  I+  + +  PSNL  A  LAK+ E+     N  ++        +PT          
Sbjct: 179 LREDIRFMVRMLNPSNLHIAFGLAKMQEE-----NXAALRRTAKLGSVPTR--------- 224

Query: 138 NPLLPLPPPNPSNPPKIAL-PICRLTAVEMQTRQE------------PSEILQEEEILV- 183
              L + PP+P  P K A+ P+ RL+  +M+ R++            P    +   + + 
Sbjct: 225 ---LAIGPPSP--PEKRAIVPVQRLSPSQMKERRDKGLCYNCDDKWAPGHKCKSXRLFIM 279

Query: 184 ------EDTVPKQLSAK--------------------------------------INNKP 199
                 +D VPK   A+                                      I  + 
Sbjct: 280 ECDESSDDEVPKSEVAEGRASKSKEETPIVEIEPGISIHALVGSPNPKTMRFLGHICGRA 339

Query: 200 LSVLIDTGSTHNYLHPRLAHFLHLAIEKTMSFLVAVGNGERIRSEGHCSKVKFEMQGVGF 259
           + +L+DTGSTHN++ P +    HL    T    V V NG+ +RSEG C+ V   MQG  +
Sbjct: 340 VVILVDTGSTHNFMDPSVIQRAHLPSNPTEGLSVKVANGQAVRSEGSCAAVPLHMQGNLY 399

Query: 260 EADFHILDFSRADAVLGVQWLEKLGKIITDHKALTMEFT 298
             DF+IL     D VLGVQWL+ LG I+ D   L MEF+
Sbjct: 400 TIDFYILTLGGCDIVLGVQWLQTLGPILWDFSRLQMEFS 438

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147774273|emb|CAN76793.1| hypothetical protein VITISV_026680 [Vitis vinifera]

 Score =  145 bits (366), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 104/339 (30%), Positives = 155/339 (45%), Gaps = 77/339 (22%)

Query: 18  ALTRAIESRFGPSSYINHRATLFKLTQTSSVEAYQSTFENICNRVTNLHPDAILDCFISG 77
              RA+++RFG S Y +    L +L QTS+VE Y+S FE + N++  L     L CF+SG
Sbjct: 152 GFVRALQTRFGSSPYEDPMEALIRLKQTSTVEDYKSQFEALSNQLRGLAESYKLSCFLSG 211

Query: 78  LKPTIQNELAIHKPSNLRDAIALAKLIEDKLQSYNQKSISWKPTNTPIPTTTRNETNIRL 137
           L+  I+  + +  PSNL  A  LAK+ E+ + +  + +   K  + P    TR       
Sbjct: 212 LRENIRFMVRMLNPSNLHIAFGLAKMQEENVAALRRTA---KLGSVP----TR------- 257

Query: 138 NPLLPLPPPNPSNPPKIAL-PICRLTAVEMQTRQE------------PSEILQEEEILV- 183
              L + PP+P  P K A+ P+ RL+  +M+ R++            P    +   + + 
Sbjct: 258 ---LAIGPPSP--PEKRAIVPVQRLSPSQMKERRDKGLCYNCDDKWAPGHKCKSARLFIM 312

Query: 184 ------EDTVPKQLSAK--------------------------------------INNKP 199
                 +D VPK   A+                                      I  + 
Sbjct: 313 ECDESSDDEVPKSEVAEGRASKSKEETPIVEIEPGISIHALVGSPNPKTMRFLGHICGRA 372

Query: 200 LSVLIDTGSTHNYLHPRLAHFLHLAIEKTMSFLVAVGNGERIRSEGHCSKVKFEMQGVGF 259
           + +L+DTGSTHN++ P +    HL    T    V V NG+ +RSEG C+ V   MQG  +
Sbjct: 373 VVILVDTGSTHNFMDPSVIQRAHLPSNPTEGLSVKVANGQAVRSEGSCAAVPLHMQGNLY 432

Query: 260 EADFHILDFSRADAVLGVQWLEKLGKIITDHKALTMEFT 298
             DF+IL     D VLGVQWL+ LG I+ D   L MEF+
Sbjct: 433 TIDFYILTLGGCDIVLGVQWLQTLGPILWDFSRLQMEFS 471

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147789424|emb|CAN66607.1| hypothetical protein VITISV_017554 [Vitis vinifera]

 Score =  145 bits (365), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 101/338 (29%), Positives = 153/338 (45%), Gaps = 75/338 (22%)

Query: 18  ALTRAIESRFGPSSYINHRATLFKLTQTSSVEAYQSTFENICNRVTNLHPDAILDCFISG 77
              RA+++RFG S Y N    L +L QTS+VE Y+S FE + N++  L     L CF+SG
Sbjct: 117 GFVRALQTRFGSSPYENPMEALIRLKQTSTVEDYKSQFEALSNQLRGLAESYKLSCFLSG 176

Query: 78  LKPTIQNELAIHKPSNLRDAIALAKLIEDKLQSYNQKSISWKPTNTPIPTTTRNETNIRL 137
           L+  I+  + +  PSNL  A  LAK+ E+ + +  + +   K  + P    TR       
Sbjct: 177 LREDIRFMVCMLNPSNLHIAFGLAKMQEENVAALRRTA---KLGSVP----TR------- 222

Query: 138 NPLLPLPPPNPSNPPKIALPICRLTAVEMQTRQE------------PSEILQEEEILV-- 183
              L + PP+P    ++ +P+ RL+  +M+ R++            P    +   + +  
Sbjct: 223 ---LAIGPPSPPEK-RVIVPVQRLSPSQMKERRDKGLCYNCDDKWAPGHKCKSARLFIME 278

Query: 184 -----EDTVPKQLSAK--------------------------------------INNKPL 200
                +D VPK   A+                                      I  + +
Sbjct: 279 CDESSDDKVPKSEVAEGRASKSKEETPIVEIEPGISIHALVGSPNPKTMRFLGHICGRAV 338

Query: 201 SVLIDTGSTHNYLHPRLAHFLHLAIEKTMSFLVAVGNGERIRSEGHCSKVKFEMQGVGFE 260
            +L+DTGSTHN++ P +    HL    T    V V NG+ + SEG C+ V   MQG  + 
Sbjct: 339 VILVDTGSTHNFMDPSVIQRAHLPSNPTEGLSVKVANGQAVCSEGSCAAVPLHMQGNLYT 398

Query: 261 ADFHILDFSRADAVLGVQWLEKLGKIITDHKALTMEFT 298
            DF+IL     D VLGVQWL+ LG I+ D   L MEF+
Sbjct: 399 IDFYILTLGGCDIVLGVQWLQTLGPILWDFSRLQMEFS 436

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147783182|emb|CAN68669.1| hypothetical protein VITISV_039388 [Vitis vinifera]

 Score =  144 bits (364), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 106/347 (30%), Positives = 160/347 (46%), Gaps = 58/347 (16%)

Query: 8   TRYRALEEQAALTRAIESRFGPSSYINHRATLFKLTQTSSVEAYQSTFENICNRVTNLHP 67
           T++R        T+A++ RFGP+ Y +    L +L QT++V AYQ  FE + +RV  L  
Sbjct: 136 TKFRGPLTWDEFTKAVQLRFGPTDYEDPSEALTRLKQTTTVAAYQEAFEKLSHRVDGLPE 195

Query: 68  DAILDCFISGLKPTIQNELAIHKPSNLRDAIALAKLIEDK--LQSYNQKSISWKPTNTPI 125
           + ++ CFI+GL+  I+ ++ I +P  L D I +A+LIE++  LQ    +   ++P +   
Sbjct: 196 NFLIGCFIAGLQDEIRIDVKIKQPRTLADTIGVARLIEERNQLQRKPTQQTRFQPASV-T 254

Query: 126 PTTTRNETNIRLNPLLPLPPPNPSNPPKIALPIC--RLTAVEMQTRQEPSEILQEEE--- 180
           P  + N T   L P    PP    N    A P    R+T  E + R+E       +E   
Sbjct: 255 PKASPNPTAGVLGP----PPTQHMNQSSNAQPATFHRITNQEARERREKGLCYYCDEKFV 310

Query: 181 ----------ILVEDTV-----------PKQ------------------------LSAKI 195
                      ++ED+            P+Q                        +  K+
Sbjct: 311 AGHRCERPQLFMIEDSPHMNTEDVEGAHPEQEHHEVIPEIYFHAIAGTEHPQTICVMGKL 370

Query: 196 NNKPLSVLIDTGSTHNYLHPRLAHF-LHLAIEKTMSFLVAVGNGERIRSEGHCSKVKFEM 254
            NK + VLID GSTHN++   +  F   L + +   F V V N E+I   G C  +   +
Sbjct: 371 KNKNVMVLIDGGSTHNFIDQAIIVFKFGLPVIRDRKFEVMVANREKIECAGQCRSLTLTI 430

Query: 255 QGVGFEADFHILDFSRADAVLGVQWLEKLGKIITDHKALTMEFTYKG 301
           QG    AD++IL  +    VLGVQWLE LG I  D+K LTM F  +G
Sbjct: 431 QGYSVTADYYILPVAACQLVLGVQWLETLGPIEMDYKQLTMNFKMEG 477

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359479937|ref|XP_002269588.2| PREDICTED: uncharacterized protein LOC100257206 [Vitis vinifera]

 Score =  141 bits (356), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 109/351 (31%), Positives = 166/351 (47%), Gaps = 56/351 (15%)

Query: 2   TNEDMQTRYRALEEQA------ALTRAIESRFGPSSYINHRATLFKLTQTSSVEAYQSTF 55
            N+  Q  +R L+E+            + +RFGPS   +    L ++ Q  ++  YQ  F
Sbjct: 97  ANQWWQWLHRTLKEEGHVISWEKFEEELWARFGPSGCEDFDEALSRIKQLGTLRDYQREF 156

Query: 56  ENICNRVTNLHPDAILDCFISGLKPTIQNELAIHKPSNLRDAIALAKLIEDKLQSYNQKS 115
           E + NRV      A++  F+ GLK  I + + + KP +L++ I LA++ +D++    Q+ 
Sbjct: 157 EKLGNRVQGWTQKALVGTFMGGLKAEIVDAIRMFKPQSLKEVINLARMRDDQIA--RQRR 214

Query: 116 ISW-KPTNTPI--PTTTRNETNIRLNPLLPLPPPNPSNPPKIALPIC-----RLTA---- 163
             W  P   PI  P  TR +  I   P+  L         K A  +C     R TA    
Sbjct: 215 FMWLPPVRAPIALPQATRVDPAIPAKPIKSLSWEEMQR--KRAQGLCFNCNERFTAGHRC 272

Query: 164 --------------------VEMQTRQ-----EPSEILQEE---EI----LVEDTVPK-- 189
                                + QT +     E +E+ + E   EI    L   T PK  
Sbjct: 273 QKPQLLLLKGHEGNVDCGNGTDQQTWEDDHGGEAAEVQEHEPKLEITLHALTGWTAPKTM 332

Query: 190 QLSAKINNKPLSVLIDTGSTHNYLHPRLAHFLHLAIEKTMSFLVAVGNGERIRSEGHCSK 249
           +++AK+    + VLID+GSTHN++  RLA+ L L +  T +F V V NGER++ +G   K
Sbjct: 333 RVTAKMGPHEVMVLIDSGSTHNFISNRLANKLRLPVIPTETFPVWVANGERLKCQGRYDK 392

Query: 250 VKFEMQGVGFEADFHILDFSRADAVLGVQWLEKLGKIITDHKALTMEFTYK 300
           V+ E+QG  F      L  S  D VLGVQWLE LG ++ + K LTM+F ++
Sbjct: 393 VRVELQGTEFYLTLFSLPLSGLDLVLGVQWLEMLGSVVCNWKQLTMDFIWE 443

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147842329|emb|CAN76208.1| hypothetical protein VITISV_041623 [Vitis vinifera]

 Score =  137 bits (346), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 97/315 (30%), Positives = 158/315 (50%), Gaps = 35/315 (11%)

Query: 4   EDMQTRYRALEEQAALTRAIESRFGPSSYINHRATLFKLTQTSSVEAYQSTFENICNRVT 63
           ED    +   EE+      + +RFGP    +    L K+ Q  S+  YQ  FE + NRV 
Sbjct: 132 EDRVVTWELFEEE------LWARFGPIECEDFDEALSKVRQIGSLRDYQKEFERLGNRVH 185

Query: 64  NLHPDAILDCFISGLKPTIQNELAIHKPSNLRDAIALAKLIEDKLQSYNQKSISWKP--- 120
                A++  F+ GL+  I   + + KP  L++A +LA + +++LQ  +Q+ IS  P   
Sbjct: 186 GWSQKALVGSFMGGLRSEISETIRMFKPKTLKEATSLAHMKDEQLQ--HQRRISRPPLPI 243

Query: 121 -TNTPIPTTTRNETNIRLNPLLPLPPPNPSNPPKIALPIC-----RLTA----VEMQTRQ 170
            T   +PTTT+     RL+              + A  +C     + T+     E  T++
Sbjct: 244 RTLLALPTTTKASHVKRLS--------WEEMQKRRAQGLCFNCDEKFTSGHRCKEGDTKE 295

Query: 171 EPSEILQEEEI----LVEDTVPK--QLSAKINNKPLSVLIDTGSTHNYLHPRLAHFLHLA 224
             +++  + EI    L+  T  K  +++AKI    + VLID+GSTHN++  ++   LHL 
Sbjct: 296 AETDLPSDPEISLHALIGWTTTKTMRVTAKIGTHDVVVLIDSGSTHNFISDKVVALLHLP 355

Query: 225 IEKTMSFLVAVGNGERIRSEGHCSKVKFEMQGVGFEADFHILDFSRADAVLGVQWLEKLG 284
           +  T  F V V NG+ ++ +G    +   +QG+ F   F+ L  +  D VLGVQWLE+LG
Sbjct: 356 VVPTAPFHVRVANGQPLKCQGRFDNIHILLQGIPFSITFYSLPLNGLDLVLGVQWLEQLG 415

Query: 285 KIITDHKALTMEFTY 299
            ++ D K +TMEF +
Sbjct: 416 SVVCDWKQMTMEFQW 430

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147838975|emb|CAN68101.1| hypothetical protein VITISV_042364 [Vitis vinifera]

 Score =  129 bits (324), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 97/340 (28%), Positives = 154/340 (45%), Gaps = 45/340 (13%)

Query: 2   TNEDMQTRYRALEEQ------AALTRAIESRFGPSSYINHRATLFKLTQTSSVEAYQSTF 55
           TN+  Q   R+  E+      A     + +RFGP+   +    L ++ Q  S+  YQ  F
Sbjct: 98  TNQWWQWLRRSYSEEGKEVAWADFEEELWARFGPTECEDFDEALSRVKQMGSLRDYQREF 157

Query: 56  ENICNRVTNLHPDAILDCFISGLKPTIQNELAIHKPSNLRDAIALAKLIEDKLQSYN--- 112
           E + NRV      A++  F+ GLK  I +++ + KP +L++AI+LA++ +D+L       
Sbjct: 158 EKLGNRVQGWTQKALVGMFMGGLKSEIADDIRMFKPKSLKEAISLARMRDDQLTCQXRFT 217

Query: 113 --------QKSISWKPTNTPIPT---------TTRNETNIRLN-------------PLLP 142
                   Q   S +  + P PT           R    +  N             P L 
Sbjct: 218 RPLQXNXPQPBFSTQMKSKPTPTMKRLTWEEMXKRRAXGLXFNCDDKFTXGHKCRGPQLL 277

Query: 143 LPPPNPSNPPKIALPICRLTAVEMQTRQEPSEILQEEEILVEDTVPK--QLSAKINNKPL 200
           L   N S P K       +    +  + EP         L   + PK  +++ KI    +
Sbjct: 278 LLEGN-SXPNKENDIDEEIEEPAINEQTEPXISFH---ALTGWSTPKTMRITTKIAQHEV 333

Query: 201 SVLIDTGSTHNYLHPRLAHFLHLAIEKTMSFLVAVGNGERIRSEGHCSKVKFEMQGVGFE 260
            VLID+GSTHN++  ++A+ LHL +  T  F V V NG  ++ +     V   +QG+ F 
Sbjct: 334 VVLIDSGSTHNFISEKVAYMLHLPVVPTKPFTVKVANGTPLKCQWRFEHVHVILQGIPFS 393

Query: 261 ADFHILDFSRADAVLGVQWLEKLGKIITDHKALTMEFTYK 300
              + L  +  D VLGVQWLE+LG ++ + K LTMEF ++
Sbjct: 394 LTLYSLPLTXLDLVLGVQWLEQLGTVVCNWKKLTMEFQWE 433

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	301
TAIR|locus:2091793	421	AT3G29750 [Arabidopsis thalian	0.448	0.320	0.269	1.7e-11

TAIR|locus:2091793 AT3G29750 [Arabidopsis thaliana (taxid:3702)]

 Score = 135 (52.6 bits), Expect = 1.7e-11, Sum P(2) = 1.7e-11
 Identities = 38/141 (26%), Positives = 74/141 (52%)

Query:   165 EMQTRQEPSEILQE--EEILVEDTVPKQLS--AKINNKPLSVLIDTGSTHNYLHPRLAHF 220
             E++  ++ S  L++  E+++++ T  K +     I +  + V ID+G+T N++   LA  
Sbjct:    96 ELEELEQDSYTLRQGMEQLVIDLTRNKGMRFYGFILDHKVVVAIDSGATDNFILVELAFS 155

Query:   221 LHLAIEKTMSFLVAVGNGERIRSEGHCSKVKFEMQGVGFEADFHILDFSRADA--VLGVQ 278
             L L    T    V +G  + I+S G C  ++  +Q V    +F +LD ++ D   +LG +
Sbjct:   156 LKLPTSITNQASVLLGQRQCIQSVGTCLGIRLWVQEVEITENFLLLDLAKTDVDVILGYE 215

Query:   279 WLEKLGKIITDHKALTMEFTY 299
             WL KLG+ + + +     F++
Sbjct:   216 WLSKLGETMVNWQNQDFSFSH 236

GO:0000166 "nucleotide binding" evidence=IEA

GO:0004812 "aminoacyl-tRNA ligase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0006418 "tRNA aminoacylation for protein translation" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: eugene3.04360003 hypothetical protein (425 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	301
cd00303	92	cd00303, retropepsin_like, Retropepsins; pepsin-li	2e-21
pfam13650	89	pfam13650, Asp_protease_2, Aspartyl protease	5e-09
pfam08284	135	pfam08284, RVP_2, Retroviral aspartyl protease	4e-07
pfam13975	72	pfam13975, gag-asp_proteas, gag-polyprotein putati	2e-06
cd05483	96	cd05483, retropepsin_like_bacteria, Bacterial aspa	2e-05

>gnl|CDD|133136 cd00303, retropepsin_like, Retropepsins; pepsin-like aspartate proteases

 Score = 85.9 bits (213), Expect = 2e-21
 Identities = 30/92 (32%), Positives = 44/92 (47%), Gaps = 1/92 (1%)

Query: 191 LSAKINNKPLSVLIDTGSTHNYLHPRLAHFLHL-AIEKTMSFLVAVGNGERIRSEGHCSK 249
           L  KIN  P+  L+D+G++ N++   LA  L L          V   NG  +++ G    
Sbjct: 1   LKGKINGVPVRALVDSGASVNFISESLAKKLGLPPRLLPTPLKVKGANGSSVKTLGVILP 60

Query: 250 VKFEMQGVGFEADFHILDFSRADAVLGVQWLE 281
           V   + G  F  DF++LD    D +LG  WLE
Sbjct: 61  VTIGIGGKTFTVDFYVLDLLSYDVILGRPWLE 92

The family includes pepsin-like aspartate proteases from retroviruses, retrotransposons and retroelements, as well as eukaryotic dna-damage-inducible proteins (DDIs), and bacterial aspartate peptidases. While fungal and mammalian pepsins are bilobal proteins with structurally related N and C-terminals, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate peptidases is classified by MEROPS as the peptidase family A2 (retropepsin family, clan AA), subfamily A2A. Length = 92

>gnl|CDD|222288 pfam13650, Asp_protease_2, Aspartyl protease

 Score = 52.3 bits (126), Expect = 5e-09
 Identities = 24/93 (25%), Positives = 38/93 (40%), Gaps = 8/93 (8%)

Query: 191 LSAKINNKPLSVLIDTGSTHNYLHPRLAHFLHLAIEKTMSFLVAVGNGERIRSEGHCSKV 250
           +   IN KP+  L+DTG++   L   LA  L L   K     V+  NG    +      +
Sbjct: 1   VPVTINGKPVRFLLDTGASGTLLSRSLAERLGLKPTKLTIGRVSTANGTVRAALVRLDSL 60

Query: 251 KF---EMQGVGFEADFHILDFSR-ADAVLGVQW 279
           K     ++ V       +LD     D +LG+ +
Sbjct: 61  KIGGITLRNV----PAVVLDLGDLIDGLLGMDF 89

This family consists of predicted aspartic proteases, typically from 180 to 230 amino acids in length, in MEROPS clan AA. This model describes the well-conserved 121-residue C-terminal region. The poorly conserved, variable length N-terminal region usually contains a predicted transmembrane helix. Length = 89

>gnl|CDD|116868 pfam08284, RVP_2, Retroviral aspartyl protease

 Score = 48.2 bits (115), Expect = 4e-07
 Identities = 25/88 (28%), Positives = 46/88 (52%)

Query: 195 INNKPLSVLIDTGSTHNYLHPRLAHFLHLAIEKTMSFLVAVGNGERIRSEGHCSKVKFEM 254
           +N+ P +VL D+G++H+++         L +E   + ++    G  + +   C  V  E+
Sbjct: 28  VNSIPATVLFDSGASHSFISQAFVGRHGLPLEALRTPMLVHSPGGDMTATHRCPSVNIEI 87

Query: 255 QGVGFEADFHILDFSRADAVLGVQWLEK 282
           QGV F A+  +LD    D +LG+ WL +
Sbjct: 88  QGVDFPANLILLDSKDLDVILGMDWLAQ 115

Single domain aspartyl proteases from retroviruses, retrotransposons, and badnaviruses (plant dsDNA viruses). These proteases are generally part of a larger polyprotein; usually pol, more rarely gag. Retroviral proteases appear to be homologous to a single domain of the two-domain eukaryotic aspartyl proteases. Length = 135

>gnl|CDD|206145 pfam13975, gag-asp_proteas, gag-polyprotein putative aspartyl protease

 Score = 44.2 bits (105), Expect = 2e-06
 Identities = 15/56 (26%), Positives = 27/56 (48%), Gaps = 3/56 (5%)

Query: 191 LSAKINNKPLSVLIDTGSTHNYLHPRLAHFLHLAIEKTMSFL---VAVGNGERIRS 243
           +   I    +  L+DTG+TH+++   LA  L L +E   +     +A G+   I+ 
Sbjct: 11  VEVSIGGVEVKALVDTGATHSFISESLAARLGLPLEADQAPSRVRLADGSVREIQG 66

This family of putative aspartyl proteases is found pre-dominantly in retroviral proteins. Length = 72

>gnl|CDD|133150 cd05483, retropepsin_like_bacteria, Bacterial aspartate proteases, retropepsin-like protease family

 Score = 42.2 bits (100), Expect = 2e-05
 Identities = 19/91 (20%), Positives = 34/91 (37%), Gaps = 9/91 (9%)

Query: 191 LSAKINNKPLSVLIDTGSTHNYLHPRLAHFLHLAIEKTMSFLVAVGNGERIRSEGHCSKV 250
           +   IN +P+  L+DTG++   +   LA  L L +       V   NG    +      +
Sbjct: 5   VPVTINGQPVRFLLDTGASTTVISEELAERLGLPLTLGGKVTVQTANGRVRAARVRLDSL 64

Query: 251 K---FEMQGVGFEADFHILDFS--RADAVLG 276
           +     ++ V       +L       D +LG
Sbjct: 65  QIGGITLRNV----PAVVLPGDALGVDGLLG 91

This family of bacteria aspartate proteases is a subfamily of retropepsin-like protease family, which includes enzymes from retrovirus and retrotransposons. While fungal and mammalian pepsin-like aspartate proteases are bilobal proteins with structurally related N- and C-termini, this family of bacteria aspartate proteases is half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate proteases is classified by MEROPS as the peptidase family A2 (retropepsin family, clan AA), subfamily A2A. Length = 96

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	301
PF08284	135	RVP_2: Retroviral aspartyl protease; InterPro: IPR	99.94
cd05479	124	RP_DDI RP_DDI; retropepsin-like domain of DNA dama	99.9
cd05484	91	retropepsin_like_LTR_2 Retropepsins_like_LTR, peps	99.78
PF09668	124	Asp_protease: Aspartyl protease; InterPro: IPR0191	99.74
cd05480	103	NRIP_C NRIP_C; putative nuclear receptor interacti	99.63
PF00077	100	RVP: Retroviral aspartyl protease The Prosite entr	99.62
TIGR02281	121	clan_AA_DTGA clan AA aspartic protease, TIGR02281	99.59
PF13650	90	Asp_protease_2: Aspartyl protease	99.59
PF03732	96	Retrotrans_gag: Retrotransposon gag protein ; Inte	99.58
PF02160	201	Peptidase_A3: Cauliflower mosaic virus peptidase (	99.56
TIGR03698	107	clan_AA_DTGF clan AA aspartic protease, AF_0612 fa	99.49
cd05483	96	retropepsin_like_bacteria Bacterial aspartate prot	99.46
cd06095	86	RP_RTVL_H_like Retropepsin of the RTVL_H family of	99.46
PF12384	177	Peptidase_A2B: Ty3 transposon peptidase; InterPro:	99.45
KOG0012	380	consensus DNA damage inducible protein [Replicatio	99.43
cd00303	92	retropepsin_like Retropepsins; pepsin-like asparta	99.42
PF13975	72	gag-asp_proteas: gag-polyprotein putative aspartyl	99.2
cd05481	93	retropepsin_like_LTR_1 Retropepsins_like_LTR; peps	99.2
cd06094	89	RP_Saci_like RP_Saci_like, retropepsin family. Ret	99.06
COG3577	215	Predicted aspartyl protease [General function pred	99.01
COG5550	125	Predicted aspartyl protease [Posttranslational mod	98.63
cd05482	87	HIV_retropepsin_like Retropepsins, pepsin-like asp	98.38
PF05585	164	DUF1758: Putative peptidase (DUF1758); InterPro: I	98.24
PF02023	95	SCAN: SCAN domain; InterPro: IPR003309 A number of	98.05
PF14223	119	UBN2: gag-polypeptide of LTR copia-type	97.97
PF12382	137	Peptidase_A2E: Retrotransposon peptidase; InterPro	97.86
cd07936	85	SCAN SCAN oligomerization domain. The SCAN domain	97.2
PF14227	119	UBN2_2: gag-polypeptide of LTR copia-type	96.95
COG4067	162	Uncharacterized protein conserved in archaea [Post	96.85
smart00431	113	SCAN leucine rich region.	96.51
cd05476	265	pepsin_A_like_plant Chroloplast Nucleoids DNA-bind	96.46
PF05618	138	Zn_protease: Putative ATP-dependant zinc protease;	96.34
cd06096	326	Plasmepsin_5 Plasmepsins are a class of aspartic p	95.87
PF00026	317	Asp: Eukaryotic aspartyl protease The Prosite entr	94.8
cd05477	318	gastricsin Gastricsins, asparate proteases produce	94.68
cd05478	317	pepsin_A Pepsin A, aspartic protease produced in g	94.61
cd05474	295	SAP_like SAPs, pepsin-like proteinases secreted fr	94.53
cd05485	329	Cathepsin_D_like Cathepsin_D_like, pepsin family o	94.5
cd06098	317	phytepsin Phytepsin, a plant homolog of mammalian	94.19
cd06097	278	Aspergillopepsin_like Aspergillopepsin_like, aspar	94.16
cd05471	283	pepsin_like Pepsin-like aspartic proteases, biloba	93.77
cd05486	316	Cathespin_E Cathepsin E, non-lysosomal aspartic pr	93.48
PF03564	145	DUF1759: Protein of unknown function (DUF1759); In	93.48
PF03539	163	Spuma_A9PTase: Spumavirus aspartic protease (A9);	93.37
cd05472	299	cnd41_like Chloroplast Nucleoids DNA-binding Prote	92.97
PTZ00147	453	plasmepsin-1; Provisional	92.13
PF14244	152	UBN2_3: gag-polypeptide of LTR copia-type	92.01
cd05488	320	Proteinase_A_fungi Fungal Proteinase A , aspartic	91.95
PTZ00013	450	plasmepsin 4 (PM4); Provisional	91.63
cd05474	295	SAP_like SAPs, pepsin-like proteinases secreted fr	90.81
cd05490	325	Cathepsin_D2 Cathepsin_D2, pepsin family of protei	90.7
PF00026	317	Asp: Eukaryotic aspartyl protease The Prosite entr	90.66
PF14893	331	PNMA: PNMA	90.3
PLN03146	431	aspartyl protease family protein; Provisional	90.16
cd05470	109	pepsin_retropepsin_like Cellular and retroviral pe	90.06
cd05487	326	renin_like Renin stimulates production of angioten	89.72
PTZ00165	482	aspartyl protease; Provisional	89.17
cd05475	273	nucellin_like Nucellins, plant aspartic proteases	88.54
PTZ00147	453	plasmepsin-1; Provisional	87.73
PTZ00013	450	plasmepsin 4 (PM4); Provisional	87.17
cd05476	265	pepsin_A_like_plant Chroloplast Nucleoids DNA-bind	86.4
PF00607	206	Gag_p24: gag gene protein p24 (core nucleocapsid p	85.92
cd06097	278	Aspergillopepsin_like Aspergillopepsin_like, aspar	85.61
cd05473	364	beta_secretase_like Beta-secretase, aspartic-acid	84.75
PF02093	211	Gag_p30: Gag P30 core shell protein; InterPro: IPR	82.78
PF14541	161	TAXi_C: Xylanase inhibitor C-terminal; PDB: 3AUP_D	82.42
cd05487	326	renin_like Renin stimulates production of angioten	82.36
cd05489	362	xylanase_inhibitor_I_like TAXI-I inhibits degradat	81.36

>PF08284 RVP_2: Retroviral aspartyl protease; InterPro: IPR013242 This region defines single domain aspartyl proteases from retroviruses, retrotransposons, and badnaviruses (plant dsDNA viruses)

Probab=99.94  E-value=2.2e-26  Score=177.23  Aligned_cols=114  Identities=33%  Similarity=0.601  Sum_probs=99.8

Q ss_pred             CCCCcEE--EEEEcCEeEEEEEcCCCCccccCHHHHHHcCcceec-ccceEEEEecCceEeecceeeeEEEEEeceeEEE
Q 036248          185 DTVPKQL--SAKINNKPLSVLIDTGSTHNYLHPRLAHFLHLAIEK-TMSFLVAVGNGERIRSEGHCSKVKFEMQGVGFEA  261 (301)
Q Consensus       185 ~~~~~~i--~~~v~~~~v~~liDsGAs~~~i~~~~~~~~~~~~~~-~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~  261 (301)
                      .+.|..|  ...|+++++.+|||||||||||+.++|.+++++..+ ..++.|... |+.+.+...|..+.+.++|+.+..
T Consensus        16 ~~~~~vi~g~~~I~~~~~~vLiDSGAThsFIs~~~a~~~~l~~~~l~~~~~V~~~-g~~~~~~~~~~~~~~~i~g~~~~~   94 (135)
T PF08284_consen   16 EESPDVITGTFLINSIPASVLIDSGATHSFISSSFAKKLGLPLEPLPRPIVVSAP-GGSINCEGVCPDVPLSIQGHEFVV   94 (135)
T ss_pred             cCCCCeEEEEEEeccEEEEEEEecCCCcEEccHHHHHhcCCEEEEccCeeEEecc-cccccccceeeeEEEEECCeEEEe
Confidence            3455544  458899999999999999999999999999999964 567888765 445667788889999999999999


Q ss_pred             eEEEecCCCCcEEecHHHHhhcCCeEeeccceEEEEEeC
Q 036248          262 DFHILDFSRADAVLGVQWLEKLGKIITDHKALTMEFTYK  300 (301)
Q Consensus       262 ~~~v~~~~~~d~ILG~dwL~~~~~i~id~~~~~~~~~~~  300 (301)
                      +|.|+++.+||+|||||||.+|+| .|||.+++|+|...
T Consensus        95 dl~vl~l~~~DvILGm~WL~~~~~-~IDw~~k~v~f~~p  132 (135)
T PF08284_consen   95 DLLVLDLGGYDVILGMDWLKKHNP-VIDWATKTVTFNSP  132 (135)
T ss_pred             eeEEecccceeeEeccchHHhCCC-EEEccCCEEEEeCC
Confidence            999999999999999999999999 89999999999753

These proteases are generally part of a larger polyprotein; usually pol, more rarely gag. Retroviral proteases appear to be homologous to a single domain of the two-domain eukaryotic aspartyl proteases.

>cd05479 RP_DDI RP_DDI; retropepsin-like domain of DNA damage inducible protein

Probab=99.90  E-value=1.1e-22  Score=155.17  Aligned_cols=107  Identities=15%  Similarity=0.212  Sum_probs=93.5

Q ss_pred             EEEEEEcCEeEEEEEcCCCCccccCHHHHHHcCcceecccceEEEEecCceEeecceeeeEEEEEeceeEEEeEEEecCC
Q 036248          190 QLSAKINNKPLSVLIDTGSTHNYLHPRLAHFLHLAIEKTMSFLVAVGNGERIRSEGHCSKVKFEMQGVGFEADFHILDFS  269 (301)
Q Consensus       190 ~i~~~v~~~~v~~liDsGAs~~~i~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  269 (301)
                      ++.+.|||+++++||||||++|+|+.++++++|++.....+..+..++++.....+.+..+.+.+++..+..+|.|++..
T Consensus        18 ~v~~~Ing~~~~~LvDTGAs~s~Is~~~a~~lgl~~~~~~~~~~~~~g~g~~~~~g~~~~~~l~i~~~~~~~~~~Vl~~~   97 (124)
T cd05479          18 YINVEINGVPVKAFVDSGAQMTIMSKACAEKCGLMRLIDKRFQGIAKGVGTQKILGRIHLAQVKIGNLFLPCSFTVLEDD   97 (124)
T ss_pred             EEEEEECCEEEEEEEeCCCceEEeCHHHHHHcCCccccCcceEEEEecCCCcEEEeEEEEEEEEECCEEeeeEEEEECCC
Confidence            88899999999999999999999999999999998654445555555533355667777889999999999999999999


Q ss_pred             CCcEEecHHHHhhcCCeEeeccceEEEE
Q 036248          270 RADAVLGVQWLEKLGKIITDHKALTMEF  297 (301)
Q Consensus       270 ~~d~ILG~dwL~~~~~i~id~~~~~~~~  297 (301)
                      ++|+|||+|||.++++ .|||.+++|++
T Consensus        98 ~~d~ILG~d~L~~~~~-~ID~~~~~i~~  124 (124)
T cd05479          98 DVDFLIGLDMLKRHQC-VIDLKENVLRI  124 (124)
T ss_pred             CcCEEecHHHHHhCCe-EEECCCCEEEC
Confidence            9999999999999996 89999999874

The family represents the retropepsin-like domain of DNA damage inducible protein. DNA damage inducible protein has a retropepsin-like domain and an amino-terminal ubiquitin-like domain and/or a UBA (ubiquitin-associated) domain. This CD represents the retropepsin-like domain of DDI.

>cd05484 retropepsin_like_LTR_2 Retropepsins_like_LTR, pepsin-like aspartate proteases

Probab=99.78  E-value=2.8e-18  Score=123.84  Aligned_cols=90  Identities=20%  Similarity=0.275  Sum_probs=82.8

Q ss_pred             EEEEEEcCEeEEEEEcCCCCccccCHHHHHHcCcceecccceEEEEecCceEeecceeeeEEEEEeceeEEEeEEEecCC
Q 036248          190 QLSAKINNKPLSVLIDTGSTHNYLHPRLAHFLHLAIEKTMSFLVAVGNGERIRSEGHCSKVKFEMQGVGFEADFHILDFS  269 (301)
Q Consensus       190 ~i~~~v~~~~v~~liDsGAs~~~i~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  269 (301)
                      .+.+.|||+++.+||||||++|+|+.+.+.+++.+........+.+++|..+.+.+.+ .+.+.+++..+..+|+|++..
T Consensus         2 ~~~~~Ing~~i~~lvDTGA~~svis~~~~~~lg~~~~~~~~~~v~~a~G~~~~~~G~~-~~~v~~~~~~~~~~~~v~~~~   80 (91)
T cd05484           2 TVTLLVNGKPLKFQLDTGSAITVISEKTWRKLGSPPLKPTKKRLRTATGTKLSVLGQI-LVTVKYGGKTKVLTLYVVKNE   80 (91)
T ss_pred             EEEEEECCEEEEEEEcCCcceEEeCHHHHHHhCCCccccccEEEEecCCCEeeEeEEE-EEEEEECCEEEEEEEEEEECC
Confidence            3678999999999999999999999999999999875557899999999999888887 799999999999999999987


Q ss_pred             CCcEEecHHHHh
Q 036248          270 RADAVLGVQWLE  281 (301)
Q Consensus       270 ~~d~ILG~dwL~  281 (301)
                       ++.|||+|||.
T Consensus        81 -~~~lLG~~wl~   91 (91)
T cd05484          81 -GLNLLGRDWLD   91 (91)
T ss_pred             -CCCccChhhcC
Confidence             99999999984

Retropepsin of retrotransposons with long terminal repeats are pepsin-like aspartate proteases. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate peptidases is classif

>PF09668 Asp_protease: Aspartyl protease; InterPro: IPR019103 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=99.74  E-value=4.2e-17  Score=122.02  Aligned_cols=98  Identities=26%  Similarity=0.367  Sum_probs=77.9

Q ss_pred             EEEEEEcCEeEEEEEcCCCCccccCHHHHHHcCcceecccce-EEEEecCceEeecceeeeEEEEEeceeEEEeEEEecC
Q 036248          190 QLSAKINNKPLSVLIDTGSTHNYLHPRLAHFLHLAIEKTMSF-LVAVGNGERIRSEGHCSKVKFEMQGVGFEADFHILDF  268 (301)
Q Consensus       190 ~i~~~v~~~~v~~liDsGAs~~~i~~~~~~~~~~~~~~~~~~-~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  268 (301)
                      +|.+.|||++++|+|||||.+|+||.++++++|+........ .+..+.|. .++.+++..+.+.+++..+...|.|++.
T Consensus        26 yI~~~ing~~vkA~VDtGAQ~tims~~~a~r~gL~~lid~r~~g~a~GvG~-~~i~G~Ih~~~l~ig~~~~~~s~~Vle~  104 (124)
T PF09668_consen   26 YINCKINGVPVKAFVDTGAQSTIMSKSCAERCGLMRLIDKRFAGVAKGVGT-QKILGRIHSVQLKIGGLFFPCSFTVLED  104 (124)
T ss_dssp             EEEEEETTEEEEEEEETT-SS-EEEHHHHHHTTGGGGEEGGG-EE--------EEEEEEEEEEEEETTEEEEEEEEEETT
T ss_pred             EEEEEECCEEEEEEEeCCCCccccCHHHHHHcCChhhccccccccccCCCc-CceeEEEEEEEEEECCEEEEEEEEEeCC
Confidence            888999999999999999999999999999999975322222 22223344 4577888889999999999999999998


Q ss_pred             CCCcEEecHHHHhhcCCeEee
Q 036248          269 SRADAVLGVQWLEKLGKIITD  289 (301)
Q Consensus       269 ~~~d~ILG~dwL~~~~~i~id  289 (301)
                      .+.|+|||.|||.+|+. .||
T Consensus       105 ~~~d~llGld~L~~~~c-~ID  124 (124)
T PF09668_consen  105 QDVDLLLGLDMLKRHKC-CID  124 (124)
T ss_dssp             SSSSEEEEHHHHHHTT--EEE
T ss_pred             CCcceeeeHHHHHHhCc-ccC
Confidence            88999999999999996 787

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This family of eukaryotic aspartyl proteases have a fold similar to retroviral proteases which implies they function proteolytically during regulated protein turnover []. ; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis; PDB: 3S8I_A 2I1A_B.

>cd05480 NRIP_C NRIP_C; putative nuclear receptor interacting protein

Probab=99.63  E-value=2.8e-15  Score=105.37  Aligned_cols=99  Identities=19%  Similarity=0.224  Sum_probs=83.7

Q ss_pred             EEEEcCEeEEEEEcCCCCccccCHHHHHHcCccee-cccce-EEEEecCceEeecceeeeEEEEEeceeEEEeEEEecCC
Q 036248          192 SAKINNKPLSVLIDTGSTHNYLHPRLAHFLHLAIE-KTMSF-LVAVGNGERIRSEGHCSKVKFEMQGVGFEADFHILDFS  269 (301)
Q Consensus       192 ~~~v~~~~v~~liDsGAs~~~i~~~~~~~~~~~~~-~~~~~-~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  269 (301)
                      ...+||++++|+|||||.+|+||+.++++.|+.-. ..... .+.-+-|+..++.+++..+++.+++..+...|.|++..
T Consensus         2 nCk~nG~~vkAfVDsGaQ~timS~~caercgL~r~v~~~r~~g~A~gvgt~~kiiGrih~~~ikig~~~~~CSftVld~~   81 (103)
T cd05480           2 SCQCAGKELRALVDTGCQYNLISAACLDRLGLKERVLKAKAEEEAPSLPTSVKVIGQIERLVLQLGQLTVECSAQVVDDN   81 (103)
T ss_pred             ceeECCEEEEEEEecCCchhhcCHHHHHHcChHhhhhhccccccccCCCcceeEeeEEEEEEEEeCCEEeeEEEEEEcCC
Confidence            46899999999999999999999999999999743 22122 33334466567889999999999999999999999988


Q ss_pred             CCcEEecHHHHhhcCCeEeecc
Q 036248          270 RADAVLGVQWLEKLGKIITDHK  291 (301)
Q Consensus       270 ~~d~ILG~dwL~~~~~i~id~~  291 (301)
                      +.|++||.|-|.+|+. .||-.
T Consensus        82 ~~d~llGLdmLkrhqc-~IdL~  102 (103)
T cd05480          82 EKNFSLGLQTLKSLKC-VINLE  102 (103)
T ss_pred             CcceEeeHHHHhhcce-eeecc
Confidence            9999999999999997 89964

Proteins in this family have been described as probable nuclear receptor interacting proteins. The C-terminal domain of this family is homologous to the retroviral aspartyl protease domain. The domain is structurally related to one lobe of the pepsin molecule. The conserved active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate peptidases is classified by MEROPS as the peptidase family A2 (retropepsin family, clan AA), subfamily A2A.

>PF00077 RVP: Retroviral aspartyl protease The Prosite entry also includes Pfam:PF00026; InterPro: IPR018061 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=99.62  E-value=4.5e-15  Score=109.09  Aligned_cols=94  Identities=23%  Similarity=0.359  Sum_probs=81.5

Q ss_pred             EEEEEEcCEeEEEEEcCCCCccccCHHHHHHcCcceecccceEEEEecCceEeecceeeeEEEEEeceeEEEeEEEecCC
Q 036248          190 QLSAKINNKPLSVLIDTGSTHNYLHPRLAHFLHLAIEKTMSFLVAVGNGERIRSEGHCSKVKFEMQGVGFEADFHILDFS  269 (301)
Q Consensus       190 ~i~~~v~~~~v~~liDsGAs~~~i~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  269 (301)
                      ++.+.|||+++.+||||||++++|+.+.+......  ......+..++|.. ...+. ..+.+.+++..+...|+|++..
T Consensus         7 ~i~v~i~g~~i~~LlDTGA~vsiI~~~~~~~~~~~--~~~~~~v~~~~g~~-~~~~~-~~~~v~~~~~~~~~~~~v~~~~   82 (100)
T PF00077_consen    7 YITVKINGKKIKALLDTGADVSIISEKDWKKLGPP--PKTSITVRGAGGSS-SILGS-TTVEVKIGGKEFNHTFLVVPDL   82 (100)
T ss_dssp             EEEEEETTEEEEEEEETTBSSEEESSGGSSSTSSE--EEEEEEEEETTEEE-EEEEE-EEEEEEETTEEEEEEEEESSTC
T ss_pred             eEEEeECCEEEEEEEecCCCcceeccccccccccc--ccCCceeccCCCcc-eeeeE-EEEEEEEECccceEEEEecCCC
Confidence            78899999999999999999999999998877655  45677888888876 55554 4789999999999999999987


Q ss_pred             CCcEEecHHHHhhcCCeEee
Q 036248          270 RADAVLGVQWLEKLGKIITD  289 (301)
Q Consensus       270 ~~d~ILG~dwL~~~~~i~id  289 (301)
                      .+| |||+|||.+++. .|+
T Consensus        83 ~~~-ILG~D~L~~~~~-~i~  100 (100)
T PF00077_consen   83 PMN-ILGRDFLKKLNA-VIN  100 (100)
T ss_dssp             SSE-EEEHHHHTTTTC-EEE
T ss_pred             CCC-EeChhHHHHcCC-EEC
Confidence            888 999999999995 664

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of aspartic peptidases belong to the MEROPS peptidase family A2 (retropepsin family, clan AA), subfamily A2A. The family includes the single domain aspartic proteases from retroviruses, retrotransposons, and badnaviruses (plant dsDNA viruses). Retroviral aspartyl protease is synthesised as part of the POL polyprotein that contains; an aspartyl protease, a reverse transcriptase, RNase H and integrase. POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins.; PDB: 3D3T_B 3SQF_A 1NSO_A 2HB3_A 2HS2_A 2HS1_B 3K4V_A 3GGV_C 1HTG_B 2FDE_A ....

>TIGR02281 clan_AA_DTGA clan AA aspartic protease, TIGR02281 family

Probab=99.59  E-value=3.9e-14  Score=107.27  Aligned_cols=104  Identities=18%  Similarity=0.327  Sum_probs=83.1

Q ss_pred             EEEEEEcCEeEEEEEcCCCCccccCHHHHHHcCcceec-ccceEEEEecCceEeecceeeeEEEEEeceeEE-EeEEEec
Q 036248          190 QLSAKINNKPLSVLIDTGSTHNYLHPRLAHFLHLAIEK-TMSFLVAVGNGERIRSEGHCSKVKFEMQGVGFE-ADFHILD  267 (301)
Q Consensus       190 ~i~~~v~~~~v~~liDsGAs~~~i~~~~~~~~~~~~~~-~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~  267 (301)
                      .+.+.|||+++.+||||||++++|++++++++++.... ..+..+.+++|......  ..--.+.+++..+. +++.|++
T Consensus        13 ~v~~~InG~~~~flVDTGAs~t~is~~~A~~Lgl~~~~~~~~~~~~ta~G~~~~~~--~~l~~l~iG~~~~~nv~~~v~~   90 (121)
T TIGR02281        13 YATGRVNGRNVRFLVDTGATSVALNEEDAQRLGLDLNRLGYTVTVSTANGQIKAAR--VTLDRVAIGGIVVNDVDAMVAE   90 (121)
T ss_pred             EEEEEECCEEEEEEEECCCCcEEcCHHHHHHcCCCcccCCceEEEEeCCCcEEEEE--EEeCEEEECCEEEeCcEEEEeC
Confidence            77889999999999999999999999999999998753 45788899999754322  22245788998887 7889998


Q ss_pred             CCC-CcEEecHHHHhhcCCeEeeccceEEEE
Q 036248          268 FSR-ADAVLGVQWLEKLGKIITDHKALTMEF  297 (301)
Q Consensus       268 ~~~-~d~ILG~dwL~~~~~i~id~~~~~~~~  297 (301)
                      ... .+.|||||||.++..+.||-  +.|.+
T Consensus        91 ~~~~~~~LLGm~fL~~~~~~~~~~--~~l~l  119 (121)
T TIGR02281        91 GGALSESLLGMSFLNRLSRFTVRG--GKLIL  119 (121)
T ss_pred             CCcCCceEcCHHHHhccccEEEEC--CEEEE
Confidence            763 68999999999998655655  44444

This family consists of predicted aspartic proteases, typically from 180 to 230 amino acids in length, in MEROPS clan AA. This model describes the well-conserved 121-residue C-terminal region. The poorly conserved, variable length N-terminal region usually contains a predicted transmembrane helix. Sequences in the seed alignment and those scoring above the trusted cutoff are Proteobacterial; homologs scroing between trusted and noise are found in Pyrobaculum aerophilum str. IM2 (archaeal), Pirellula sp. (Planctomycetes), and Nostoc sp. PCC 7120 (Cyanobacteria).

>PF13650 Asp_protease_2: Aspartyl protease

Probab=99.59  E-value=1.8e-14  Score=103.58  Aligned_cols=87  Identities=25%  Similarity=0.425  Sum_probs=72.3

Q ss_pred             EEEEEcCEeEEEEEcCCCCccccCHHHHHHcCcceecc-cceEEEEecCceEeecceeeeEEEEEeceeE-EEeEEEec-
Q 036248          191 LSAKINNKPLSVLIDTGSTHNYLHPRLAHFLHLAIEKT-MSFLVAVGNGERIRSEGHCSKVKFEMQGVGF-EADFHILD-  267 (301)
Q Consensus       191 i~~~v~~~~v~~liDsGAs~~~i~~~~~~~~~~~~~~~-~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~-  267 (301)
                      |++.|||+++.+||||||+.++|+++++++++++.... ....+..++|.........  ..+.+++..+ ..++.+++ 
T Consensus         1 V~v~vng~~~~~liDTGa~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~--~~i~ig~~~~~~~~~~v~~~   78 (90)
T PF13650_consen    1 VPVKVNGKPVRFLIDTGASISVISRSLAKKLGLKPRPKSVPISVSGAGGSVTVYRGRV--DSITIGGITLKNVPFLVVDL   78 (90)
T ss_pred             CEEEECCEEEEEEEcCCCCcEEECHHHHHHcCCCCcCCceeEEEEeCCCCEEEEEEEE--EEEEECCEEEEeEEEEEECC
Confidence            46899999999999999999999999999999987654 3688889999844333332  3788999887 67899999 


Q ss_pred             CCCCcEEecHHH
Q 036248          268 FSRADAVLGVQW  279 (301)
Q Consensus       268 ~~~~d~ILG~dw  279 (301)
                      ...+|+|||+||
T Consensus        79 ~~~~~~iLG~df   90 (90)
T PF13650_consen   79 GDPIDGILGMDF   90 (90)
T ss_pred             CCCCEEEeCCcC
Confidence            557999999998

>PF03732 Retrotrans_gag: Retrotransposon gag protein ; InterPro: IPR005162 Transposable elements (TEs) promote various chromosomal rearrangements more efficiently, and often more specifically, than other cellular processes

Probab=99.58  E-value=4.4e-15  Score=108.11  Aligned_cols=79  Identities=27%  Similarity=0.467  Sum_probs=73.8

Q ss_pred             CchhHHHHHHHHHH--------HHHHHHHHHhhcCCChhhh-HHHHHhcCcc-cccHHHHHHHHHHHHHHhhc-CCHHHH
Q 036248            2 TNEDMQTRYRALEE--------QAALTRAIESRFGPSSYIN-HRATLFKLTQ-TSSVEAYQSTFENICNRVTN-LHPDAI   70 (301)
Q Consensus         2 ~~g~A~~W~~~~~~--------w~~f~~~l~~~F~~~~~~~-~~~~l~~lkQ-~~sv~~Y~~~f~~L~~~~~~-~~e~~~   70 (301)
                      +.|.|+.||+.+..        |++|+.+|..+|.++.... ++.+|.+++| +|||.+|+.+|+.|+..++. ++++.+
T Consensus         7 L~g~A~~w~~~~~~~~~~~~~~W~~~~~~~~~~f~~~~~~~~~~~~l~~l~Q~~esv~~y~~rf~~l~~~~~~~~~e~~~   86 (96)
T PF03732_consen    7 LKGPARQWYRNLRPNEIRDFITWEEFKDAFRKRFFPPDRKEQARQELNSLRQGNESVREYVNRFRELARRAPPPMDEEML   86 (96)
T ss_pred             ccCHHHHHHHHhHhcCCCCCCCHHHHHHHHHHHHhhhhccccchhhhhhhhccCCcHHHHHHHHHHHHHHCCCCcCHHHH
Confidence            68999999999876        9999999999999987765 7899999999 99999999999999999985 999999


Q ss_pred             HHHHHhcCCH
Q 036248           71 LDCFISGLKP   80 (301)
Q Consensus        71 ~~~f~~GL~~   80 (301)
                      +..|++||+|
T Consensus        87 v~~f~~GL~~   96 (96)
T PF03732_consen   87 VERFIRGLRP   96 (96)
T ss_pred             HHHHHHCCCC
Confidence            9999999975

Retrotransposons are structurally similar to retroviruses and are bounded by long terminal repeats. This entry represents eukaryotic Gag or capsid-related retrotranspon-related proteins. There is a central motif QGXXEXXXXXFXXLXXH that is common to Retroviridae gag-proteins, but is poorly conserved.

>PF02160 Peptidase_A3: Cauliflower mosaic virus peptidase (A3); InterPro: IPR000588 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=99.56  E-value=2.1e-14  Score=115.47  Aligned_cols=109  Identities=17%  Similarity=0.170  Sum_probs=92.3

Q ss_pred             EEEE--EEcC---EeEEEEEcCCCCccccCHHHHHHcCcceecccceEEEEecCceEeecceeeeEEEEEeceeEEEeEE
Q 036248          190 QLSA--KINN---KPLSVLIDTGSTHNYLHPRLAHFLHLAIEKTMSFLVAVGNGERIRSEGHCSKVKFEMQGVGFEADFH  264 (301)
Q Consensus       190 ~i~~--~v~~---~~v~~liDsGAs~~~i~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  264 (301)
                      +|.+  .+.|   ..+.++|||||+.|+++...+....|. ....++.|++|||+...+..++.++.+.+.+..|...++
T Consensus         6 yI~~~i~~~gy~~~~~~~~vDTGAt~C~~~~~iiP~e~we-~~~~~i~v~~an~~~~~i~~~~~~~~i~I~~~~F~IP~i   84 (201)
T PF02160_consen    6 YIKVKISFPGYKKFNYHCYVDTGATICCASKKIIPEEYWE-KSKKPIKVKGANGSIIQINKKAKNGKIQIADKIFRIPTI   84 (201)
T ss_pred             EEEEEEEEcCceeEEEEEEEeCCCceEEecCCcCCHHHHH-hCCCcEEEEEecCCceEEEEEecCceEEEccEEEeccEE
Confidence            4444  4455   457899999999999999988777765 344679999999998888889999999999999999887


Q ss_pred             EecCCCCcEEecHHHHhhcCCeEeeccceEEEEEeCC
Q 036248          265 ILDFSRADAVLGVQWLEKLGKIITDHKALTMEFTYKG  301 (301)
Q Consensus       265 v~~~~~~d~ILG~dwL~~~~~i~id~~~~~~~~~~~~  301 (301)
                      ..-..+.|+|||++||+.+.| .|+|.+ .+.|+.+|
T Consensus        85 Yq~~~g~d~IlG~NF~r~y~P-fiq~~~-~I~f~~~~  119 (201)
T PF02160_consen   85 YQQESGIDIILGNNFLRLYEP-FIQTED-RIQFHKKG  119 (201)
T ss_pred             EEecCCCCEEecchHHHhcCC-cEEEcc-EEEEEeCC
Confidence            777689999999999999999 699975 68898765

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of sequences contain an aspartic peptidase signature that belongs to MEROPS peptidase family A3, subfamily A3A (cauliflower mosaic virus-type endopeptidase, clan AA). Cauliflower mosaic virus belongs to the Retro-transcribing viruses, which have a double-stranded DNA genome. The genome includes an open reading frame (ORF V) that shows similarities to the pol gene of retroviruses. This ORF codes for a polyprotein that includes a reverse transcriptase, which, on the basis of a DTG triplet near the N terminus, was suggested to include an aspartic protease. The presence of an aspartic protease has been confirmed by mutational studies, implicating Asp-45 in catalysis. The protease releases itself from the polyprotein and is involved in reactions required to process the ORF IV polyprotein, which includes the viral coat protein []. The viral aspartic peptidase signature has also been found associated with a polyprotein encoded by integrated pararetrovirus-like sequences in the genome of Nicotiana tabacum (Common tobacco) []. ; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis

>TIGR03698 clan_AA_DTGF clan AA aspartic protease, AF_0612 family

Probab=99.49  E-value=3.8e-13  Score=99.52  Aligned_cols=93  Identities=23%  Similarity=0.355  Sum_probs=75.9

Q ss_pred             CEeEEEEEcCCCCccc-cCHHHHHHcCcceecccceEEEEecCceEeecceeeeEEEEEeceeEEEeEEEecCCCCcEEe
Q 036248          197 NKPLSVLIDTGSTHNY-LHPRLAHFLHLAIEKTMSFLVAVGNGERIRSEGHCSKVKFEMQGVGFEADFHILDFSRADAVL  275 (301)
Q Consensus       197 ~~~v~~liDsGAs~~~-i~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~d~IL  275 (301)
                      ..++.+||||||+..+ |+++.++++|++..  ....+.+|||..+...  .....+.++|......+.+.+..+ +.+|
T Consensus        14 ~~~v~~LVDTGat~~~~l~~~~a~~lgl~~~--~~~~~~tA~G~~~~~~--v~~~~v~igg~~~~~~v~~~~~~~-~~LL   88 (107)
T TIGR03698        14 FMEVRALVDTGFSGFLLVPPDIVNKLGLPEL--DQRRVYLADGREVLTD--VAKASIIINGLEIDAFVESLGYVD-EPLL   88 (107)
T ss_pred             ceEEEEEEECCCCeEEecCHHHHHHcCCCcc--cCcEEEecCCcEEEEE--EEEEEEEECCEEEEEEEEecCCCC-ccEe
Confidence            3589999999999997 99999999999864  3679999999866554  335778889998765655556555 8999


Q ss_pred             cHHHHhhcCCeEeeccceEE
Q 036248          276 GVQWLEKLGKIITDHKALTM  295 (301)
Q Consensus       276 G~dwL~~~~~i~id~~~~~~  295 (301)
                      |+.||++++ +.|||.++++
T Consensus        89 G~~~L~~l~-l~id~~~~~~  107 (107)
T TIGR03698        89 GTELLEGLG-IVIDYRNQGL  107 (107)
T ss_pred             cHHHHhhCC-EEEehhhCcC
Confidence            999999999 5899998764

Members of this protein family are clan AA aspartic proteases, related to family TIGR02281. These proteins resemble retropepsins, pepsin-like proteases of retroviruses such as HIV. Members of this family are found in archaea and bacteria.

>cd05483 retropepsin_like_bacteria Bacterial aspartate proteases, retropepsin-like protease family

Probab=99.46  E-value=7.2e-13  Score=96.34  Aligned_cols=90  Identities=22%  Similarity=0.350  Sum_probs=75.3

Q ss_pred             EEEEEEcCEeEEEEEcCCCCccccCHHHHHHcCcceecccceEEEEecCceEeecceeeeEEEEEeceeEE-EeEEEecC
Q 036248          190 QLSAKINNKPLSVLIDTGSTHNYLHPRLAHFLHLAIEKTMSFLVAVGNGERIRSEGHCSKVKFEMQGVGFE-ADFHILDF  268 (301)
Q Consensus       190 ~i~~~v~~~~v~~liDsGAs~~~i~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~  268 (301)
                      .+.+.||++++.+||||||+.++|+.++++++++.........+..++|........  -.++.+++..+. ..+.|++.
T Consensus         4 ~v~v~i~~~~~~~llDTGa~~s~i~~~~~~~l~~~~~~~~~~~~~~~~G~~~~~~~~--~~~i~ig~~~~~~~~~~v~d~   81 (96)
T cd05483           4 VVPVTINGQPVRFLLDTGASTTVISEELAERLGLPLTLGGKVTVQTANGRVRAARVR--LDSLQIGGITLRNVPAVVLPG   81 (96)
T ss_pred             EEEEEECCEEEEEEEECCCCcEEcCHHHHHHcCCCccCCCcEEEEecCCCccceEEE--cceEEECCcEEeccEEEEeCC
Confidence            577899999999999999999999999999999843455678889998886644433  346788999886 68999998


Q ss_pred             CC--CcEEecHHHHh
Q 036248          269 SR--ADAVLGVQWLE  281 (301)
Q Consensus       269 ~~--~d~ILG~dwL~  281 (301)
                      ..  .|+|||+|||.
T Consensus        82 ~~~~~~gIlG~d~l~   96 (96)
T cd05483          82 DALGVDGLLGMDFLR   96 (96)
T ss_pred             cccCCceEeChHHhC
Confidence            87  99999999984

This family of bacteria aspartate proteases is a subfamily of retropepsin-like protease family, which includes enzymes from retrovirus and retrotransposons. While fungal and mammalian pepsin-like aspartate proteases are bilobal proteins with structurally related N- and C-termini, this family of bacteria aspartate proteases is half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate proteases is classified by MEROPS as the peptidase family A2 (retropepsin family, clan AA), subfamily A2A.

>cd06095 RP_RTVL_H_like Retropepsin of the RTVL_H family of human endogenous retrovirus-like elements

Probab=99.46  E-value=5.2e-13  Score=95.04  Aligned_cols=85  Identities=22%  Similarity=0.329  Sum_probs=68.2

Q ss_pred             EEEEEcCEeEEEEEcCCCCccccCHHHHHHcCcceecccceEEEEecCceEeecceeeeE-EEEEeceeEEEeEEEecCC
Q 036248          191 LSAKINNKPLSVLIDTGSTHNYLHPRLAHFLHLAIEKTMSFLVAVGNGERIRSEGHCSKV-KFEMQGVGFEADFHILDFS  269 (301)
Q Consensus       191 i~~~v~~~~v~~liDsGAs~~~i~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~-~~~~~~~~~~~~~~v~~~~  269 (301)
                      +++.|||+++.+||||||+.++|+...++++   .....+..+.+++|.. ..... .-. .+.+++......+.+++..
T Consensus         1 ~~v~InG~~~~fLvDTGA~~tii~~~~a~~~---~~~~~~~~v~gagG~~-~~~v~-~~~~~v~vg~~~~~~~~~v~~~~   75 (86)
T cd06095           1 VTITVEGVPIVFLVDTGATHSVLKSDLGPKQ---ELSTTSVLIRGVSGQS-QQPVT-TYRTLVDLGGHTVSHSFLVVPNC   75 (86)
T ss_pred             CEEEECCEEEEEEEECCCCeEEECHHHhhhc---cCCCCcEEEEeCCCcc-cccEE-EeeeEEEECCEEEEEEEEEEcCC
Confidence            3578999999999999999999999999997   2334789999999985 22211 123 4888999999889888854


Q ss_pred             CCcEEecHHHHh
Q 036248          270 RADAVLGVQWLE  281 (301)
Q Consensus       270 ~~d~ILG~dwL~  281 (301)
                       .+.|||||||.
T Consensus        76 -~~~lLG~dfL~   86 (86)
T cd06095          76 -PDPLLGRDLLS   86 (86)
T ss_pred             -CCcEechhhcC
Confidence             69999999984

This family includes aspartate proteases from retroelements with LTR (long terminal repeats) including the RTVL_H family of human endogenous retrovirus-like elements. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where

>PF12384 Peptidase_A2B: Ty3 transposon peptidase; InterPro: IPR024650 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=99.45  E-value=9.5e-13  Score=100.96  Aligned_cols=96  Identities=15%  Similarity=0.233  Sum_probs=84.5

Q ss_pred             EEEEEEcCEeEEEEEcCCCCccccCHHHHHHcCcceecccceEEEEecCceEeecceeeeEEEEEeceeEEEeEEEecCC
Q 036248          190 QLSAKINNKPLSVLIDTGSTHNYLHPRLAHFLHLAIEKTMSFLVAVGNGERIRSEGHCSKVKFEMQGVGFEADFHILDFS  269 (301)
Q Consensus       190 ~i~~~v~~~~v~~liDsGAs~~~i~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  269 (301)
                      .+...++|.++.+|+||||-.+||+.+.+++|+|+.....++.++++.+...........+++.+++..+.+.++|.+..
T Consensus        36 ~v~l~~~~t~i~vLfDSGSPTSfIr~di~~kL~L~~~~app~~fRG~vs~~~~~tsEAv~ld~~i~n~~i~i~aYV~d~m  115 (177)
T PF12384_consen   36 IVQLNCKGTPIKVLFDSGSPTSFIRSDIVEKLELPTHDAPPFRFRGFVSGESATTSEAVTLDFYIDNKLIDIAAYVTDNM  115 (177)
T ss_pred             EEEEeecCcEEEEEEeCCCccceeehhhHHhhCCccccCCCEEEeeeccCCceEEEEeEEEEEEECCeEEEEEEEEeccC
Confidence            45567899999999999999999999999999999988889999988654444444556799999999999999999999


Q ss_pred             CCcEEecHHHHhhcCC
Q 036248          270 RADAVLGVQWLEKLGK  285 (301)
Q Consensus       270 ~~d~ILG~dwL~~~~~  285 (301)
                      ++|+|+|.|.|+++..
T Consensus       116 ~~dlIIGnPiL~ryp~  131 (177)
T PF12384_consen  116 DHDLIIGNPILDRYPT  131 (177)
T ss_pred             CcceEeccHHHhhhHH
Confidence            9999999999999874

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Ty3 is a gypsy-type, retrovirus-like, element found in the budding yeast. The Ty3 aspartyl protease is required for processing of the viral polyprotein into its mature species [].

>KOG0012 consensus DNA damage inducible protein [Replication, recombination and repair]

Probab=99.43  E-value=4e-13  Score=115.16  Aligned_cols=109  Identities=18%  Similarity=0.252  Sum_probs=94.8

Q ss_pred             EEEEEEcCEeEEEEEcCCCCccccCHHHHHHcCccee-cccceEEEEecCceEeecceeeeEEEEEeceeEEEeEEEecC
Q 036248          190 QLSAKINNKPLSVLIDTGSTHNYLHPRLAHFLHLAIE-KTMSFLVAVGNGERIRSEGHCSKVKFEMQGVGFEADFHILDF  268 (301)
Q Consensus       190 ~i~~~v~~~~v~~liDsGAs~~~i~~~~~~~~~~~~~-~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  268 (301)
                      +|.+.|||++|+|+|||||..|+||..++++.|+.-. ......+..+.| ..++.+.+..+.+.+++..+...|.|++.
T Consensus       237 ~iN~~ing~~VKAfVDsGaq~timS~~Caer~gL~rlid~r~~g~a~gvg-~~ki~g~Ih~~~lki~~~~l~c~ftV~d~  315 (380)
T KOG0012|consen  237 YINCEINGVPVKAFVDSGAQTTIMSAACAERCGLNRLIDKRFQGEARGVG-TEKILGRIHQAQLKIEDLYLPCSFTVLDR  315 (380)
T ss_pred             EEEEEECCEEEEEEEcccchhhhhhHHHHHHhChHHHhhhhhhccccCCC-cccccceeEEEEEEeccEeeccceEEecC
Confidence            7888999999999999999999999999999999863 333333444444 56788999999999999999999999999


Q ss_pred             CCCcEEecHHHHhhcCCeEeeccceEEEEEeC
Q 036248          269 SRADAVLGVQWLEKLGKIITDHKALTMEFTYK  300 (301)
Q Consensus       269 ~~~d~ILG~dwL~~~~~i~id~~~~~~~~~~~  300 (301)
                      .+.|++||.|-|.+|+. +||-+++.+.+...
T Consensus       316 ~~~d~llGLd~Lrr~~c-cIdL~~~~L~ig~~  346 (380)
T KOG0012|consen  316 RDMDLLLGLDMLRRHQC-CIDLKTNVLRIGNT  346 (380)
T ss_pred             CCcchhhhHHHHHhccc-eeecccCeEEecCC
Confidence            99999999999999997 89999999987543

>cd00303 retropepsin_like Retropepsins; pepsin-like aspartate proteases

Probab=99.42  E-value=2.4e-12  Score=90.96  Aligned_cols=90  Identities=32%  Similarity=0.530  Sum_probs=76.9

Q ss_pred             EEEEcCEeEEEEEcCCCCccccCHHHHHHcCc-ceecccceEEEEecCceEeecceeeeEEEEEeceeEEEeEEEecCCC
Q 036248          192 SAKINNKPLSVLIDTGSTHNYLHPRLAHFLHL-AIEKTMSFLVAVGNGERIRSEGHCSKVKFEMQGVGFEADFHILDFSR  270 (301)
Q Consensus       192 ~~~v~~~~v~~liDsGAs~~~i~~~~~~~~~~-~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  270 (301)
                      .+.++|.++.+|+|+||++++++.+++.++++ ......+..+..++|........+..+.+.+++..+...|.+++...
T Consensus         2 ~~~~~~~~~~~liDtgs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~   81 (92)
T cd00303           2 KGKINGVPVRALVDSGASVNFISESLAKKLGLPPRLLPTPLKVKGANGSSVKTLGVILPVTIGIGGKTFTVDFYVLDLLS   81 (92)
T ss_pred             EEEECCEEEEEEEcCCCcccccCHHHHHHcCCCcccCCCceEEEecCCCEeccCcEEEEEEEEeCCEEEEEEEEEEcCCC
Confidence            46789999999999999999999999999988 33455678888888876655555467888899999999999999999


Q ss_pred             CcEEecHHHHh
Q 036248          271 ADAVLGVQWLE  281 (301)
Q Consensus       271 ~d~ILG~dwL~  281 (301)
                      +|+|||+|||.
T Consensus        82 ~~~ilG~~~l~   92 (92)
T cd00303          82 YDVILGRPWLE   92 (92)
T ss_pred             cCEEecccccC
Confidence            99999999974

The family includes pepsin-like aspartate proteases from retroviruses, retrotransposons and retroelements, as well as eukaryotic dna-damage-inducible proteins (DDIs), and bacterial aspartate peptidases. While fungal and mammalian pepsins are bilobal proteins with structurally related N and C-terminals, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples

>PF13975 gag-asp_proteas: gag-polyprotein putative aspartyl protease

Probab=99.20  E-value=7.1e-11  Score=80.91  Aligned_cols=58  Identities=33%  Similarity=0.501  Sum_probs=51.6

Q ss_pred             EEEEEEcCEeEEEEEcCCCCccccCHHHHHHcCcceecc-cceEEEEecCceEeeccee
Q 036248          190 QLSAKINNKPLSVLIDTGSTHNYLHPRLAHFLHLAIEKT-MSFLVAVGNGERIRSEGHC  247 (301)
Q Consensus       190 ~i~~~v~~~~v~~liDsGAs~~~i~~~~~~~~~~~~~~~-~~~~v~~~~g~~~~~~~~~  247 (301)
                      ++.+.|+|+.+.+||||||++|||+.+++++++++.... .+..++++||+.....+..
T Consensus        10 ~v~~~I~g~~~~alvDtGat~~fis~~~a~rLgl~~~~~~~~~~v~~a~g~~~~~~g~~   68 (72)
T PF13975_consen   10 YVPVSIGGVQVKALVDTGATHNFISESLAKRLGLPLEKPPSPIRVKLANGSVIEIRGVA   68 (72)
T ss_pred             EEEEEECCEEEEEEEeCCCcceecCHHHHHHhCCCcccCCCCEEEEECCCCccccceEE
Confidence            778899999999999999999999999999999998654 4899999999987666554

>cd05481 retropepsin_like_LTR_1 Retropepsins_like_LTR; pepsin-like aspartate protease from retrotransposons with long terminal repeats

Probab=99.20  E-value=1.7e-10  Score=82.99  Aligned_cols=84  Identities=24%  Similarity=0.322  Sum_probs=72.7

Q ss_pred             EEEcC-EeEEEEEcCCCCccccCHHHHHHcC---cceecccceEEEEecCceEeecceeeeEEEEEeceeEEEeEEEecC
Q 036248          193 AKINN-KPLSVLIDTGSTHNYLHPRLAHFLH---LAIEKTMSFLVAVGNGERIRSEGHCSKVKFEMQGVGFEADFHILDF  268 (301)
Q Consensus       193 ~~v~~-~~v~~liDsGAs~~~i~~~~~~~~~---~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  268 (301)
                      ..|+| ++++++|||||+.|+|+.+.+++++   .+....+++.+..+||+.+...+. ..+.+.+++..+..+|+|++.
T Consensus         3 ~~i~g~~~v~~~vDtGA~vnllp~~~~~~l~~~~~~~L~~t~~~L~~~~g~~~~~~G~-~~~~v~~~~~~~~~~f~Vvd~   81 (93)
T cd05481           3 MKINGKQSVKFQLDTGATCNVLPLRWLKSLTPDKDPELRPSPVRLTAYGGSTIPVEGG-VKLKCRYRNPKYNLTFQVVKE   81 (93)
T ss_pred             eEeCCceeEEEEEecCCEEEeccHHHHhhhccCCCCcCccCCeEEEeeCCCEeeeeEE-EEEEEEECCcEEEEEEEEECC
Confidence            46899 9999999999999999999999998   444456789999999999888888 479999999999999999995


Q ss_pred             CCCcEEecHH
Q 036248          269 SRADAVLGVQ  278 (301)
Q Consensus       269 ~~~d~ILG~d  278 (301)
                      . -.-|||.+
T Consensus        82 ~-~~~lLG~~   90 (93)
T cd05481          82 E-GPPLLGAK   90 (93)
T ss_pred             C-CCceEccc
Confidence            4 55667765

Retropepsin of retrotransposons with long terminal repeats are pepsin-like aspartate proteases. While fungal and mammalian pepsins are bilobal proteins with structurally related N and C-terminals, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identifi

>cd06094 RP_Saci_like RP_Saci_like, retropepsin family

Probab=99.06  E-value=7.3e-10  Score=77.19  Aligned_cols=79  Identities=23%  Similarity=0.379  Sum_probs=65.2

Q ss_pred             eEEEEEcCCCCccccCHHHHHHcCcceecccceEEEEecCceEeecceeeeEEEEEece-eEEEeEEEecCCCCcEEecH
Q 036248          199 PLSVLIDTGSTHNYLHPRLAHFLHLAIEKTMSFLVAVGNGERIRSEGHCSKVKFEMQGV-GFEADFHILDFSRADAVLGV  277 (301)
Q Consensus       199 ~v~~liDsGAs~~~i~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~~d~ILG~  277 (301)
                      .+++||||||.+|+|.....++.    ....+..+..|||+.+.+.+. ..+.+.++.. .|.-.|+|-+..  .-|||.
T Consensus         9 ~~~fLVDTGA~vSviP~~~~~~~----~~~~~~~l~AANgt~I~tyG~-~~l~ldlGlrr~~~w~FvvAdv~--~pIlGa   81 (89)
T cd06094           9 GLRFLVDTGAAVSVLPASSTKKS----LKPSPLTLQAANGTPIATYGT-RSLTLDLGLRRPFAWNFVVADVP--HPILGA   81 (89)
T ss_pred             CcEEEEeCCCceEeecccccccc----ccCCceEEEeCCCCeEeeeee-EEEEEEcCCCcEEeEEEEEcCCC--cceecH
Confidence            47899999999999998876653    233578999999999988876 5788899775 888899997764  469999


Q ss_pred             HHHhhcC
Q 036248          278 QWLEKLG  284 (301)
Q Consensus       278 dwL~~~~  284 (301)
                      |||++|+
T Consensus        82 DfL~~~~   88 (89)
T cd06094          82 DFLQHYG   88 (89)
T ss_pred             HHHHHcC
Confidence            9999986

Retropepsin on retrotransposons with long terminal repeats (LTR) including Saci-1, -2 and -3 of Schistosoma mansoni. Retropepsins are related to fungal and mammalian pepsins. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified

>COG3577 Predicted aspartyl protease [General function prediction only]

Probab=99.01  E-value=3.5e-09  Score=84.73  Aligned_cols=98  Identities=20%  Similarity=0.363  Sum_probs=79.6

Q ss_pred             EEEEEEcCEeEEEEEcCCCCccccCHHHHHHcCccee-cccceEEEEecCceEeecceeeeEEEEEeceeEE-EeEEEec
Q 036248          190 QLSAKINNKPLSVLIDTGSTHNYLHPRLAHFLHLAIE-KTMSFLVAVGNGERIRSEGHCSKVKFEMQGVGFE-ADFHILD  267 (301)
Q Consensus       190 ~i~~~v~~~~v~~liDsGAs~~~i~~~~~~~~~~~~~-~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~  267 (301)
                      ...+.|||+.+++|||||||.-.++.+.++++|+... ...++.|.+|||......  +.--.+.|++.... ++.+|.+
T Consensus       107 ~a~~~VNGk~v~fLVDTGATsVal~~~dA~RlGid~~~l~y~~~v~TANG~~~AA~--V~Ld~v~IG~I~~~nV~A~V~~  184 (215)
T COG3577         107 EANGRVNGKKVDFLVDTGATSVALNEEDARRLGIDLNSLDYTITVSTANGRARAAP--VTLDRVQIGGIRVKNVDAMVAE  184 (215)
T ss_pred             EEEEEECCEEEEEEEecCcceeecCHHHHHHhCCCccccCCceEEEccCCccccce--EEeeeEEEccEEEcCchhheec
Confidence            5668999999999999999999999999999999985 567999999999964332  22245788887764 5778887


Q ss_pred             CC-CCcEEecHHHHhhcCCeEee
Q 036248          268 FS-RADAVLGVQWLEKLGKIITD  289 (301)
Q Consensus       268 ~~-~~d~ILG~dwL~~~~~i~id  289 (301)
                      .+ .-..+|||.||.+++-+.++
T Consensus       185 ~g~L~~sLLGMSfL~rL~~fq~~  207 (215)
T COG3577         185 DGALDESLLGMSFLNRLSGFQVD  207 (215)
T ss_pred             CCccchhhhhHHHHhhccceEec
Confidence            65 47889999999999954333

>COG5550 Predicted aspartyl protease [Posttranslational modification, protein turnover, chaperones]

Probab=98.63  E-value=3.4e-07  Score=67.39  Aligned_cols=94  Identities=24%  Similarity=0.296  Sum_probs=77.7

Q ss_pred             EeEEEEEcCCCC-ccccCHHHHHHcCcceecccceEEEEecCceEeecceeeeEEEEEeceeEEEeEEEecCCCCcEEec
Q 036248          198 KPLSVLIDTGST-HNYLHPRLAHFLHLAIEKTMSFLVAVGNGERIRSEGHCSKVKFEMQGVGFEADFHILDFSRADAVLG  276 (301)
Q Consensus       198 ~~v~~liDsGAs-~~~i~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~d~ILG  276 (301)
                      +-...|||||++ -.+++++.+++++++..  ....+.+++|+.+.+  .+....+.++|........+.+....+ +||
T Consensus        25 ~~~~~LiDTGFtg~lvlp~~vaek~~~~~~--~~~~~~~a~~~~v~t--~V~~~~iki~g~e~~~~Vl~s~~~~~~-liG   99 (125)
T COG5550          25 FVYDELIDTGFTGYLVLPPQVAEKLGLPLF--STIRIVLADGGVVKT--SVALATIKIDGVEKVAFVLASDNLPEP-LIG   99 (125)
T ss_pred             EEeeeEEecCCceeEEeCHHHHHhcCCCcc--CChhhhhhcCCEEEE--EEEEEEEEECCEEEEEEEEccCCCccc-chh
Confidence            334569999999 89999999999999753  356677788887655  345678899999999888998888888 999


Q ss_pred             HHHHhhcCCeEeeccceEEEE
Q 036248          277 VQWLEKLGKIITDHKALTMEF  297 (301)
Q Consensus       277 ~dwL~~~~~i~id~~~~~~~~  297 (301)
                      ++||+..+ ..+|..+++++-
T Consensus       100 ~~~lk~l~-~~vn~~~g~LEk  119 (125)
T COG5550         100 VNLLKLLG-LVVNPKTGKLEK  119 (125)
T ss_pred             hhhhhhcc-EEEcCCcceEec
Confidence            99999999 489999988763

>cd05482 HIV_retropepsin_like Retropepsins, pepsin-like aspartate proteases

Probab=98.38  E-value=2.2e-06  Score=60.44  Aligned_cols=86  Identities=19%  Similarity=0.141  Sum_probs=61.1

Q ss_pred             EEEEcCEeEEEEEcCCCCccccCHHHHHHcCcceecccceEEEEecCceEeecceeeeEEEEEeceeEEEeEEEecCCCC
Q 036248          192 SAKINNKPLSVLIDTGSTHNYLHPRLAHFLHLAIEKTMSFLVAVGNGERIRSEGHCSKVKFEMQGVGFEADFHILDFSRA  271 (301)
Q Consensus       192 ~~~v~~~~v~~liDsGAs~~~i~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  271 (301)
                      ...|+|+.+.+|+||||..++|+...+.+. ++ ....+..+...+|. +.... ...+.+.+.+......+.|.+...-
T Consensus         2 ~~~i~g~~~~~llDTGAd~Tvi~~~~~p~~-w~-~~~~~~~i~GIGG~-~~~~~-~~~v~i~i~~~~~~g~vlv~~~~~P   77 (87)
T cd05482           2 TLYINGKLFEGLLDTGADVSIIAENDWPKN-WP-IQPAPSNLTGIGGA-ITPSQ-SSVLLLEIDGEGHLGTILVYVLSLP   77 (87)
T ss_pred             EEEECCEEEEEEEccCCCCeEEcccccCCC-Cc-cCCCCeEEEeccce-EEEEE-EeeEEEEEcCCeEEEEEEEccCCCc
Confidence            468999999999999999999998544332 11 12356677777665 33332 2368889999988888888886334


Q ss_pred             cEEecHHHHh
Q 036248          272 DAVLGVQWLE  281 (301)
Q Consensus       272 d~ILG~dwL~  281 (301)
                      .-|||+|.|.
T Consensus        78 ~nllGRd~L~   87 (87)
T cd05482          78 VNLWGRDILS   87 (87)
T ss_pred             ccEEccccCC
Confidence            4589999873

This is a subfamily of retropepsins. The family includes pepsin-like aspartate proteases from retroviruses, retrotransposons and retroelements. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This gro

>PF05585 DUF1758: Putative peptidase (DUF1758); InterPro: IPR008737 This is a family of nematode proteins of unknown function []

Probab=98.24  E-value=5.1e-06  Score=66.55  Aligned_cols=39  Identities=21%  Similarity=0.290  Sum_probs=31.3

Q ss_pred             EeEEEEEcCCCCccccCHHHHHHcCcceecccceEEEEe
Q 036248          198 KPLSVLIDTGSTHNYLHPRLAHFLHLAIEKTMSFLVAVG  236 (301)
Q Consensus       198 ~~v~~liDsGAs~~~i~~~~~~~~~~~~~~~~~~~v~~~  236 (301)
                      .++++|+||||..|||+.+++++|+|+........+.+.
T Consensus        11 ~~~~~LlDsGSq~SfIt~~la~~L~L~~~~~~~~~~~~~   49 (164)
T PF05585_consen   11 VEARALLDSGSQRSFITESLANKLNLPGTGEKILVIGTF   49 (164)
T ss_pred             EEEEEEEecCCchhHHhHHHHHHhCCCCCCceEEEEecc
Confidence            567999999999999999999999999755443444443

However, it seems likely that these proteins act as aspartic peptidases.

>PF02023 SCAN: SCAN domain; InterPro: IPR003309 A number of C2H2-zinc finger proteins contain a highly conserved N-terminal motif termed the SCAN domain

Probab=98.05  E-value=2.3e-05  Score=56.38  Aligned_cols=74  Identities=20%  Similarity=0.319  Sum_probs=61.2

Q ss_pred             HHHHHhcCcc--cccHHHHHHHHHHHHHHhh--c------CCHHHHHHHHHhcCCHHHHHhcccCCCCcHHHHHHHHHHH
Q 036248           35 HRATLFKLTQ--TSSVEAYQSTFENICNRVT--N------LHPDAILDCFISGLKPTIQNELAIHKPSNLRDAIALAKLI  104 (301)
Q Consensus        35 ~~~~l~~lkQ--~~sv~~Y~~~f~~L~~~~~--~------~~e~~~~~~f~~GL~~~i~~~l~~~~p~tl~~~~~~A~~~  104 (301)
                      .+.+|+..+-  +++..+++.++.+|+.++-  .      +-|..++.+|+..|+++++.+|..+.|.|.++|+.+|..+
T Consensus         5 ~r~~FR~~~~~~~~~p~e~~~rL~~l~~~WL~pe~~tkeqi~ellvlEQFL~~lP~e~~~wV~e~~p~s~~ea~~Lae~~   84 (95)
T PF02023_consen    5 YRQRFRSFQYQEGEGPREFLSRLRELCDRWLQPEVHTKEQILELLVLEQFLNILPPEVQTWVRERKPESAEEAVALAEDY   84 (95)
T ss_dssp             HHHHHHT--CCTTTSHHHHHHHHHHHHHHHH-TTTS-HHHHHHHHHHHHHHHHS-HHHHHHHHTCS-SSHHHHHHHHHHH
T ss_pred             HHHHHhCCCCCCCCCHHHHHHHHHHHHHHhCccccCcHHHHHHHHHHHHHHHHCCHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence            5788888875  8899999999999999993  2      3466889999999999999999999999999999999987


Q ss_pred             HHHh
Q 036248          105 EDKL  108 (301)
Q Consensus       105 e~~~  108 (301)
                      ....
T Consensus        85 ~~~~   88 (95)
T PF02023_consen   85 QRAR   88 (95)
T ss_dssp             HCCC
T ss_pred             HHhh
Confidence            6543

The SCAN domain may play an important role in the assembly and function of this newly defined subclass of transcriptional regulators [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 3LHR_B 4E6S_A 2FI2_A 1Y7Q_A.

>PF14223 UBN2: gag-polypeptide of LTR copia-type

Probab=97.97  E-value=5.8e-05  Score=56.96  Aligned_cols=92  Identities=18%  Similarity=0.265  Sum_probs=71.9

Q ss_pred             HHHHHHhhcCCChh---hh---HHHHHhcCcc--cccHHHHHHHHHHHHHHhhc----CCHHHHHHHHHhcCCHHHHHh-
Q 036248           19 LTRAIESRFGPSSY---IN---HRATLFKLTQ--TSSVEAYQSTFENICNRVTN----LHPDAILDCFISGLKPTIQNE-   85 (301)
Q Consensus        19 f~~~l~~~F~~~~~---~~---~~~~l~~lkQ--~~sv~~Y~~~f~~L~~~~~~----~~e~~~~~~f~~GL~~~i~~~-   85 (301)
                      +...|...|.....   ..   +..+|..++.  ++||.+|+.+|..|++++..    ++|..++..+++||+++.... 
T Consensus         6 ~W~~L~~~y~~~~~~~~~~~~~L~~~l~~~k~~~~~sv~~y~~~~~~i~~~L~~~g~~i~d~~~v~~iL~~Lp~~y~~~~   85 (119)
T PF14223_consen    6 AWDALKKRYEGQSKVKQARVQQLKSQLENLKMKDGESVDEYISRLKEIVDELRAIGKPISDEDLVSKILRSLPPSYDTFV   85 (119)
T ss_pred             HHHHHHHHHcCCchHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHhhhhhhhcCCcccchhHHHHHHhcCCchhHHHH
Confidence            44567777776654   22   4789999994  99999999999999999954    699999999999999865443 


Q ss_pred             --cccC-CCC--cHHHHHHHHHHHHHHhhh
Q 036248           86 --LAIH-KPS--NLRDAIALAKLIEDKLQS  110 (301)
Q Consensus        86 --l~~~-~p~--tl~~~~~~A~~~e~~~~~  110 (301)
                        +... ...  |+++++......|...+.
T Consensus        86 ~~i~~~~~~~~~t~~el~~~L~~~E~~~~~  115 (119)
T PF14223_consen   86 TAIRNSKDLPKMTLEELISRLLAEEMRLKS  115 (119)
T ss_pred             HHHHhcCCCCcCCHHHHHHHHHHHHHHHHH
Confidence              3333 444  899999999998877654

>PF12382 Peptidase_A2E: Retrotransposon peptidase; InterPro: IPR024648 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=97.86  E-value=4.3e-05  Score=53.80  Aligned_cols=84  Identities=15%  Similarity=0.196  Sum_probs=58.9

Q ss_pred             EEEEEcCCCCccccCHHHHHHcCcceecccceEEEEecCceEeecceeeeEEEEEeceeEEEeEEEecCCCCcEEecHHH
Q 036248          200 LSVLIDTGSTHNYLHPRLAHFLHLAIEKTMSFLVAVGNGERIRSEGHCSKVKFEMQGVGFEADFHILDFSRADAVLGVQW  279 (301)
Q Consensus       200 v~~liDsGAs~~~i~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~d~ILG~dw  279 (301)
                      +-.|||+||.+|+|..+.++.+.+++.+.....+..+- -...+...+.++.+.++|..+..+|+|+..-..+.-+...-
T Consensus        48 ipclidtgaq~niiteetvrahklptrpw~~sviyggv-yp~kinrkt~kl~i~lngisikteflvvkkfshpaaisftt  126 (137)
T PF12382_consen   48 IPCLIDTGAQVNIITEETVRAHKLPTRPWSQSVIYGGV-YPNKINRKTIKLNINLNGISIKTEFLVVKKFSHPAAISFTT  126 (137)
T ss_pred             ceeEEccCceeeeeehhhhhhccCCCCcchhheEeccc-cccccccceEEEEEEecceEEEEEEEEEEeccCcceEEEEE
Confidence            45799999999999999999999998865544444221 11234445567888999999999999998655444444433


Q ss_pred             HhhcC
Q 036248          280 LEKLG  284 (301)
Q Consensus       280 L~~~~  284 (301)
                      |...+
T Consensus       127 lydnn  131 (137)
T PF12382_consen  127 LYDNN  131 (137)
T ss_pred             EeeCc
Confidence            33333

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. This entry represents a small family of fungal retroviral aspartyl peptidases.

>cd07936 SCAN SCAN oligomerization domain

Probab=97.20  E-value=0.0023  Score=44.95  Aligned_cols=70  Identities=19%  Similarity=0.245  Sum_probs=59.8

Q ss_pred             HHHHHhcCcc--cccHHHHHHHHHHHHHHhhc--------CCHHHHHHHHHhcCCHHHHHhcccCCCCcHHHHHHHHHHH
Q 036248           35 HRATLFKLTQ--TSSVEAYQSTFENICNRVTN--------LHPDAILDCFISGLKPTIQNELAIHKPSNLRDAIALAKLI  104 (301)
Q Consensus        35 ~~~~l~~lkQ--~~sv~~Y~~~f~~L~~~~~~--------~~e~~~~~~f~~GL~~~i~~~l~~~~p~tl~~~~~~A~~~  104 (301)
                      .+.+|+.+..  ..+..+++.++++|++++-.        +-+...+.+|+.-|+++++.+|..+.|.+-++|+.++..+
T Consensus         4 ~r~~FR~f~~~~~~~p~eal~~L~eLc~~WLrpe~~tkeqilelLVlEQfl~~lp~e~q~~v~~~~p~s~eea~~l~e~~   83 (85)
T cd07936           4 YRQRFRAFQYQEASGPREALQRLRELCRQWLRPEIHTKEQILELLVLEQFLIILPPEVQAWVRERKPESGEEAATLAEDL   83 (85)
T ss_pred             HHHHHhccccCCCCChHHHHHHHHHHHHHHcchhhcCHHHHHHHHHHHHHhhhCCHHHHHHHHhcCCCCHHHHHHHHHHh
Confidence            4567777764  78999999999999999932        2455788999999999999999999999999999998764

The SCAN domain (named after SRE-ZBP, CTfin51, AW-1 and Number 18 cDNA) is found in several vertebrate proteins that contain C2H2 zinc finger motifs, many of which may be transcription factors playing roles in cell survival and differentiation. This protein-interaction domain is able to mediate homo- and hetero-oligomerization of SCAN-containing proteins. Some SCAN-containing proteins, including those of lower vertebrates, do not contain zinc finger motifs. It has been noted that the SCAN domain resembles a domain-swapped version of the C-terminal domain of the HIV capsid protein. This domain model features elements common to the three general groups of SCAN domains (SCAN-A1, SCAN-A2, and SCAN-B). The SCAND1 protein is truncated at the C-terminus with respect to this model, the SCAND2 protein appears to have a truncated central helix.

>PF14227 UBN2_2: gag-polypeptide of LTR copia-type

Probab=96.95  E-value=0.013  Score=44.00  Aligned_cols=91  Identities=13%  Similarity=0.239  Sum_probs=69.4

Q ss_pred             HHHHHHhhcCCChhh---hHHHHHhcCcc--cccHHHHHHHHHHHHHHhhc----CCHHHHHHHHHhcCCHHHHHhccc-
Q 036248           19 LTRAIESRFGPSSYI---NHRATLFKLTQ--TSSVEAYQSTFENICNRVTN----LHPDAILDCFISGLKPTIQNELAI-   88 (301)
Q Consensus        19 f~~~l~~~F~~~~~~---~~~~~l~~lkQ--~~sv~~Y~~~f~~L~~~~~~----~~e~~~~~~f~~GL~~~i~~~l~~-   88 (301)
                      +...|...|......   .+..+|..+|.  +++|.+|+.+|+.++.++..    ++|+.++...+.+||+.....+.. 
T Consensus         7 ~W~~L~~~y~~~~~~~~~~l~~kl~~~k~~~~~~v~~hi~~~~~l~~~L~~~g~~i~d~~~~~~lL~sLP~sy~~~~~~l   86 (119)
T PF14227_consen    7 MWDKLKKKYEKKSFANKIYLLRKLYSLKMDEGGSVRDHINEFRSLVNQLKSLGVPIDDEDKVIILLSSLPPSYDSFVTAL   86 (119)
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHhHhccchhHHHHHHHHHHHHHhhccccccchHHHHHHHHHHcCCHhHHHHHHHH
Confidence            445677777766552   25788998887  78999999999999999964    689999999999999986655422 


Q ss_pred             -----CCCCcHHHHHHHHHHHHHHhh
Q 036248           89 -----HKPSNLRDAIALAKLIEDKLQ  109 (301)
Q Consensus        89 -----~~p~tl~~~~~~A~~~e~~~~  109 (301)
                           ...-|+++++..-...|....
T Consensus        87 ~~~~~~~~~tl~~v~~~L~~ee~~~~  112 (119)
T PF14227_consen   87 LYSKPEDELTLEEVKSKLLQEEERRK  112 (119)
T ss_pred             HccCCCCCcCHHHHHHHHHHHHHHHH
Confidence                 246788888887777555443

>COG4067 Uncharacterized protein conserved in archaea [Posttranslational modification, protein turnover, chaperones]

Probab=96.85  E-value=0.0038  Score=47.97  Aligned_cols=92  Identities=24%  Similarity=0.296  Sum_probs=64.6

Q ss_pred             EeEEEEEcCCCCccccCHHHHHHcC----------cc------e-----e-c-ccceEEEEecCceEeecceeeeEEEEE
Q 036248          198 KPLSVLIDTGSTHNYLHPRLAHFLH----------LA------I-----E-K-TMSFLVAVGNGERIRSEGHCSKVKFEM  254 (301)
Q Consensus       198 ~~v~~liDsGAs~~~i~~~~~~~~~----------~~------~-----~-~-~~~~~v~~~~g~~~~~~~~~~~~~~~~  254 (301)
                      ..++|=|||||..+.++..-+....          +.      .     . + ...+.|+-++|+....... ..+.+.+
T Consensus        38 ~~~kAkiDTGA~TSsL~A~dI~~fkRdGe~WVRF~~~~~~~~~~~~~~~e~pvi~~ikvR~s~~~~~e~RpV-V~~~l~l  116 (162)
T COG4067          38 IQLKAKIDTGAVTSSLSASDIERFKRDGERWVRFRLADTDNLDQRSEECEAPVIRKIKVRSSSGSRAERRPV-VRLTLCL  116 (162)
T ss_pred             ceeeeeecccceeeeEEeecceeeeeCCceEEEEEeecccCccccceeeccceEEEEEEecCCCCccccccE-EEEEEee
Confidence            4578999999999888876554431          00      0     0 0 1244566666664333333 4678999


Q ss_pred             eceeEEEeEEEecCC--CCcEEecHHHHhhcCCeEeecc
Q 036248          255 QGVGFEADFHILDFS--RADAVLGVQWLEKLGKIITDHK  291 (301)
Q Consensus       255 ~~~~~~~~~~v~~~~--~~d~ILG~dwL~~~~~i~id~~  291 (301)
                      +|.-..++|...+-.  .|++|||.-+|.+... .+|=.
T Consensus       117 G~~~~~~E~tLtDR~~m~Yp~LlGrk~l~~~~~-~VDpS  154 (162)
T COG4067         117 GGRILPIEFTLTDRSNMRYPVLLGRKALRHFGA-VVDPS  154 (162)
T ss_pred             CCeeeeEEEEeecccccccceEecHHHHhhCCe-EECch
Confidence            999999999999965  4999999999999885 68843

>smart00431 SCAN leucine rich region

Probab=96.51  E-value=0.015  Score=42.94  Aligned_cols=71  Identities=20%  Similarity=0.280  Sum_probs=60.2

Q ss_pred             HHHHHhcCcc--cccHHHHHHHHHHHHHHhhc--------CCHHHHHHHHHhcCCHHHHHhcccCCCCcHHHHHHHHHHH
Q 036248           35 HRATLFKLTQ--TSSVEAYQSTFENICNRVTN--------LHPDAILDCFISGLKPTIQNELAIHKPSNLRDAIALAKLI  104 (301)
Q Consensus        35 ~~~~l~~lkQ--~~sv~~Y~~~f~~L~~~~~~--------~~e~~~~~~f~~GL~~~i~~~l~~~~p~tl~~~~~~A~~~  104 (301)
                      .+.+|+.+..  ..+..+++.++++|++++-.        +.+...+.+|+.-|+.+++.+|..+.|.+=+++++++...
T Consensus         4 ~r~~FR~f~y~e~~gp~eaL~~L~eLc~~WLrPe~~tKeqilElLVlEQFL~ilP~e~q~wv~~~~p~sgeeav~l~E~l   83 (113)
T smart00431        4 FRQRFRQFRYQETSGPREALSRLRELCRQWLRPELHTKEQILELLVLEQFLTILPGELQAWVREHHPESGEEAVTLLEDL   83 (113)
T ss_pred             HHHHhhccccCCCCChHHHHHHHHHHHHhhcChhhhhHHHHHHHHHHHHHhccCcHHHHHHHHhcCCCCHHHHHHHHHHh
Confidence            4567777765  77899999999999999832        2455678999999999999999999999999999998876


Q ss_pred             H
Q 036248          105 E  105 (301)
Q Consensus       105 e  105 (301)
                      .
T Consensus        84 ~   84 (113)
T smart00431       84 E   84 (113)
T ss_pred             c
Confidence            3

>cd05476 pepsin_A_like_plant Chroloplast Nucleoids DNA-binding Protease and Nucellin, pepsin-like aspartic proteases from plants

Probab=96.46  E-value=0.021  Score=49.32  Aligned_cols=85  Identities=16%  Similarity=0.148  Sum_probs=54.2

Q ss_pred             EEEEcCCCCccccCHHHHHHcCcceecccceEEEEecCceEeecceeeeEEEEEeceeEEEeEEEecC-CCCcEEecHHH
Q 036248          201 SVLIDTGSTHNYLHPRLAHFLHLAIEKTMSFLVAVGNGERIRSEGHCSKVKFEMQGVGFEADFHILDF-SRADAVLGVQW  279 (301)
Q Consensus       201 ~~liDsGAs~~~i~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~d~ILG~dw  279 (301)
                      .++||||++..++..+.+          ..+.+.+.+|....+...  ..-+...+....  +..+.. ..--.|||.+|
T Consensus       178 ~ai~DTGTs~~~lp~~~~----------P~i~~~f~~~~~~~i~~~--~y~~~~~~~~~C--~~~~~~~~~~~~ilG~~f  243 (265)
T cd05476         178 GTIIDSGTTLTYLPDPAY----------PDLTLHFDGGADLELPPE--NYFVDVGEGVVC--LAILSSSSGGVSILGNIQ  243 (265)
T ss_pred             cEEEeCCCcceEcCcccc----------CCEEEEECCCCEEEeCcc--cEEEECCCCCEE--EEEecCCCCCcEEEChhh
Confidence            489999999999988876          346666665554433322  111111111111  222232 34568999999


Q ss_pred             HhhcCCeEeeccceEEEEEeC
Q 036248          280 LEKLGKIITDHKALTMEFTYK  300 (301)
Q Consensus       280 L~~~~~i~id~~~~~~~~~~~  300 (301)
                      |+.+-. ..|+.+++|.|...
T Consensus       244 l~~~~~-vFD~~~~~iGfa~~  263 (265)
T cd05476         244 QQNFLV-EYDLENSRLGFAPA  263 (265)
T ss_pred             cccEEE-EEECCCCEEeeecC
Confidence            999995 89999999998653

This family contains pepsin like aspartic proteases from plants including Chloroplast Nucleoids DNA-binding Protease and Nucellin. Chloroplast Nucleoids DNA-binding Protease catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco) in senescent leaves of tobacco and Nucellins are important regulators of nucellar cell's progressive degradation after ovule fertilization. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. The enzymes specifically cleave bonds in peptides which

>PF05618 Zn_protease: Putative ATP-dependant zinc protease; InterPro: IPR008503 This family consists of several hypothetical proteins from different archaeal and bacterial species

Probab=96.34  E-value=0.021  Score=44.08  Aligned_cols=90  Identities=19%  Similarity=0.238  Sum_probs=48.6

Q ss_pred             CEeEEEEEcCCCCccccCHHHHHHcCcceecccce-------------------------EEEEecCceEeecceeeeEE
Q 036248          197 NKPLSVLIDTGSTHNYLHPRLAHFLHLAIEKTMSF-------------------------LVAVGNGERIRSEGHCSKVK  251 (301)
Q Consensus       197 ~~~v~~liDsGAs~~~i~~~~~~~~~~~~~~~~~~-------------------------~v~~~~g~~~~~~~~~~~~~  251 (301)
                      |..+.|=|||||..|-|+..-+....-  .....+                         .|+-.+|... ... +.++.
T Consensus        14 ~~~~~aKiDTGA~tSSLhA~~I~~fer--dg~~~VrF~~~~~~~~~~~~~~~e~p~~~~~~Ik~s~g~~e-~R~-VV~~~   89 (138)
T PF05618_consen   14 GLTIKAKIDTGAKTSSLHATDIEEFER--DGEKWVRFTVHDPDNEEKEGVTFEAPVVRRRKIKSSNGESE-RRP-VVETT   89 (138)
T ss_dssp             TEEEEEEE-TT-SSEEEE-EEEEEEEE--TTEEEEEE----EEEETTEEEEEEEEEECEEE----------CCE-EEEEE
T ss_pred             CCEEEEEEcCCCcccceeecceEEeee--CCceEEEEecccccCCCcceEEEEEEeEeEEEEEcCCCcee-Eee-EEEEE
Confidence            455889999999998887763332100  001112                         2222333311 111 23678


Q ss_pred             EEEeceeEEEeEEEecCC--CCcEEec-HHHHhhcCCeEeeccc
Q 036248          252 FEMQGVGFEADFHILDFS--RADAVLG-VQWLEKLGKIITDHKA  292 (301)
Q Consensus       252 ~~~~~~~~~~~~~v~~~~--~~d~ILG-~dwL~~~~~i~id~~~  292 (301)
                      +.+++..+.++|...+-+  .|+|+|| +.||...=  .||-..
T Consensus        90 ~~lg~~~~~~e~tL~dR~~m~yp~LlGrR~~l~~~~--lVD~s~  131 (138)
T PF05618_consen   90 LCLGGKTWKIEFTLTDRSNMKYPMLLGRRNFLRGRF--LVDVSR  131 (138)
T ss_dssp             EEETTEEEEEEEEEE-S--SS-SEEE-HHHHHHTTE--EEETT-
T ss_pred             EEECCEEEEEEEEEcCCCcCcCCEEEEehHHhcCCE--EECCCh
Confidence            999999999999999965  5999999 88887654  577543

; PDB: 2PMA_B.

>cd06096 Plasmepsin_5 Plasmepsins are a class of aspartic proteinases produced by the plasmodium parasite

Probab=95.87  E-value=0.031  Score=49.88  Aligned_cols=91  Identities=16%  Similarity=0.173  Sum_probs=58.5

Q ss_pred             EEEEEcCCCCccccCHHHHHHcCcceecccceEEEEecCceEeecceeeeEEEEEeceeEEEeEEEecCCCCcEEecHHH
Q 036248          200 LSVLIDTGSTHNYLHPRLAHFLHLAIEKTMSFLVAVGNGERIRSEGHCSKVKFEMQGVGFEADFHILDFSRADAVLGVQW  279 (301)
Q Consensus       200 v~~liDsGAs~~~i~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~d~ILG~dw  279 (301)
                      ..++||||.+..++..+.++++.-..   ..+.+.+.+|..+.+...  ..-+...+..  . +..+...+--.|||.+|
T Consensus       232 ~~aivDSGTs~~~lp~~~~~~l~~~~---P~i~~~f~~g~~~~i~p~--~y~~~~~~~~--c-~~~~~~~~~~~ILG~~f  303 (326)
T cd06096         232 LGMLVDSGSTLSHFPEDLYNKINNFF---PTITIIFENNLKIDWKPS--SYLYKKESFW--C-KGGEKSVSNKPILGASF  303 (326)
T ss_pred             CCEEEeCCCCcccCCHHHHHHHHhhc---CcEEEEEcCCcEEEECHH--HhccccCCce--E-EEEEecCCCceEEChHH
Confidence            45899999999999999998875332   456667665655443221  1111111111  1 11122223357999999


Q ss_pred             HhhcCCeEeeccceEEEEEe
Q 036248          280 LEKLGKIITDHKALTMEFTY  299 (301)
Q Consensus       280 L~~~~~i~id~~~~~~~~~~  299 (301)
                      |+.+- +..|+.+++|.|..
T Consensus       304 lr~~y-~vFD~~~~riGfa~  322 (326)
T cd06096         304 FKNKQ-IIFDLDNNRIGFVE  322 (326)
T ss_pred             hcCcE-EEEECcCCEEeeEc
Confidence            99999 48999999999864

The family contains a group of aspartic proteinases homologous to plasmepsin 5. Plasmepsins are a class of at least 10 enzymes produced by the plasmodium parasite. Through their haemoglobin-degrading activity, they are an important cause of symptoms in malaria sufferers. This family of enzymes is a potential target for anti-malarial drugs. Plasmepsins are aspartic acid proteases, which means their active site contains two aspartic acid residues. These two aspartic acid residue act respectively as proton donor and proton acceptor, catalyzing the hydrolysis of peptide bond in proteins. Aspartic proteinases are composed of two structurally similar beta barrel lobes, each lobe contributing an aspartic acid residue to form a catalytic dyad that acts to cleave the substrate peptide bond. The catalytic Asp residues are contained in an Asp-Thr-Gly-Ser/thr motif in both N- and C-terminal l

>PF00026 Asp: Eukaryotic aspartyl protease The Prosite entry also includes Pfam:PF00077

Probab=94.80  E-value=0.072  Score=46.97  Aligned_cols=94  Identities=19%  Similarity=0.266  Sum_probs=56.1

Q ss_pred             eEEEEEcCCCCccccCHHHHHHcCcceecccceEEEEecCceEeecc--eeeeEEEEEeceeEEE---------------
Q 036248          199 PLSVLIDTGSTHNYLHPRLAHFLHLAIEKTMSFLVAVGNGERIRSEG--HCSKVKFEMQGVGFEA---------------  261 (301)
Q Consensus       199 ~v~~liDsGAs~~~i~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~--~~~~~~~~~~~~~~~~---------------  261 (301)
                      ...++||||++...+..+.+..+--........     +.-.+.+..  ..+.+.+.+++.++.+               
T Consensus       199 ~~~~~~Dtgt~~i~lp~~~~~~i~~~l~~~~~~-----~~~~~~c~~~~~~p~l~f~~~~~~~~i~~~~~~~~~~~~~~~  273 (317)
T PF00026_consen  199 GQQAILDTGTSYIYLPRSIFDAIIKALGGSYSD-----GVYSVPCNSTDSLPDLTFTFGGVTFTIPPSDYIFKIEDGNGG  273 (317)
T ss_dssp             EEEEEEETTBSSEEEEHHHHHHHHHHHTTEEEC-----SEEEEETTGGGGSEEEEEEETTEEEEEEHHHHEEEESSTTSS
T ss_pred             ceeeecccccccccccchhhHHHHhhhcccccc-----eeEEEecccccccceEEEeeCCEEEEecchHhcccccccccc
Confidence            357999999999999999877763221100000     011111111  1233444444444332               


Q ss_pred             ----eEEEec--CCCCcEEecHHHHhhcCCeEeeccceEEEEE
Q 036248          262 ----DFHILD--FSRADAVLGVQWLEKLGKIITDHKALTMEFT  298 (301)
Q Consensus       262 ----~~~v~~--~~~~d~ILG~dwL~~~~~i~id~~~~~~~~~  298 (301)
                          .+...+  .....+|||.+||+.+=. ..|+.+++|.|.
T Consensus       274 ~C~~~i~~~~~~~~~~~~iLG~~fl~~~y~-vfD~~~~~ig~A  315 (317)
T PF00026_consen  274 YCYLGIQPMDSSDDSDDWILGSPFLRNYYV-VFDYENNRIGFA  315 (317)
T ss_dssp             EEEESEEEESSTTSSSEEEEEHHHHTTEEE-EEETTTTEEEEE
T ss_pred             eeEeeeecccccccCCceEecHHHhhceEE-EEeCCCCEEEEe
Confidence                122222  245789999999999995 899999999874

; InterPro: IPR001461 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of aspartic peptidases belong to MEROPS peptidase family A1 (pepsin family, clan AA). The type example is pepsin A from Homo sapiens (Human) . More than 70 aspartic peptidases, from all from eukaryotic organisms, have been identified. These include pepsins, cathepsins, and renins. The enzymes are synthesised with signal peptides, and the proenzymes are secreted or passed into the lysosomal/endosomal system, where acidification leads to autocatalytic activation. Most members of the pepsin family specifically cleave bonds in peptides that are at least six residues in length, with hydrophobic residues in both the P1 and P1' positions []. Crystallography has shown the active site to form a groove across the junction of the two lobes, with an extended loop projecting over the cleft to form an 11-residue flap, which encloses substrates and inhibitors within the active site []. Specificity is determined by several hydrophobic residues surrounding the catalytic aspartates, and by three residues in the flap. Cysteine residues are well conserved within the pepsin family, pepsin itself containing three disulphide loops. The first loop is found in all but the fungal enzymes, and is usually around five residues in length, but is longer in barrierpepsin and candidapepsin; the second loop is also small and found only in the animal enzymes; and the third loop is the largest, found in all members of the family, except for the cysteine-free polyporopepsin. The loops are spread unequally throughout the two lobes, suggesting that they formed after the initial gene duplication and fusion event []. This family does not include the retroviral nor retrotransposon aspartic proteases which are much smaller and appear to be homologous to the single domain aspartic proteases.; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis; PDB: 1CZI_E 3CMS_A 1CMS_A 4CMS_A 1YG9_A 2NR6_A 3LIZ_A 1FLH_A 3UTL_A 1QRP_E ....

>cd05477 gastricsin Gastricsins, asparate proteases produced in gastric mucosa

Probab=94.68  E-value=0.37  Score=42.76  Aligned_cols=92  Identities=17%  Similarity=0.234  Sum_probs=55.9

Q ss_pred             EEEEcCCCCccccCHHHHHHcCcceecccceEEEEecCc-eEeecc--eeeeEEEEEeceeEEEeE-------------E
Q 036248          201 SVLIDTGSTHNYLHPRLAHFLHLAIEKTMSFLVAVGNGE-RIRSEG--HCSKVKFEMQGVGFEADF-------------H  264 (301)
Q Consensus       201 ~~liDsGAs~~~i~~~~~~~~~~~~~~~~~~~v~~~~g~-~~~~~~--~~~~~~~~~~~~~~~~~~-------------~  264 (301)
                      .++||||++..++..+.++.+.-......    . ..|. .+.+..  ..+.+.+.+++..+.+..             .
T Consensus       203 ~~iiDSGtt~~~lP~~~~~~l~~~~~~~~----~-~~~~~~~~C~~~~~~p~l~~~f~g~~~~v~~~~y~~~~~~~C~~~  277 (318)
T cd05477         203 QAIVDTGTSLLTAPQQVMSTLMQSIGAQQ----D-QYGQYVVNCNNIQNLPTLTFTINGVSFPLPPSAYILQNNGYCTVG  277 (318)
T ss_pred             eeeECCCCccEECCHHHHHHHHHHhCCcc----c-cCCCEEEeCCccccCCcEEEEECCEEEEECHHHeEecCCCeEEEE
Confidence            58999999999999998877532221100    0 0111 111111  123466666666554321             1


Q ss_pred             EecC------CCCcEEecHHHHhhcCCeEeeccceEEEEE
Q 036248          265 ILDF------SRADAVLGVQWLEKLGKIITDHKALTMEFT  298 (301)
Q Consensus       265 v~~~------~~~d~ILG~dwL~~~~~i~id~~~~~~~~~  298 (301)
                      +.+.      .+...|||.+||+.+-. ..|+.+.+|.|.
T Consensus       278 i~~~~~~~~~~~~~~ilG~~fl~~~y~-vfD~~~~~ig~a  316 (318)
T cd05477         278 IEPTYLPSQNGQPLWILGDVFLRQYYS-VYDLGNNQVGFA  316 (318)
T ss_pred             EEecccCCCCCCceEEEcHHHhhheEE-EEeCCCCEEeee
Confidence            2111      12358999999999995 799999999885

Gastricsin is also called pepsinogen C. Gastricsins are produced in gastric mucosa of mammals. It is synthesized by the chief cells in the stomach as an inactive zymogen. It is self-converted to a mature enzyme under acidic conditions. Human gastricsin is distributed throughout all parts of the stomach. Gastricsin is synthesized as an inactive progastricsin that has an approximately 40 residue prosequence. It is self-converting to a mature enzyme being triggered by a drop in pH from neutrality to acidic conditions. Like other aspartic proteases, gastricsin are characterized by two catalytic aspartic residues at the active site, and display optimal activity at acidic pH. Mature enzyme has a pseudo-2-fold symmetry that passes through the active site between the catalytic aspartate residues. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic aspartate residue, with an exten

>cd05478 pepsin_A Pepsin A, aspartic protease produced in gastric mucosa of mammals

Probab=94.61  E-value=0.22  Score=44.17  Aligned_cols=100  Identities=16%  Similarity=0.206  Sum_probs=61.4

Q ss_pred             EEEcCEeE------EEEEcCCCCccccCHHHHHHcCcceecccceEEEEecCc-eEeecc--eeeeEEEEEeceeEEEeE
Q 036248          193 AKINNKPL------SVLIDTGSTHNYLHPRLAHFLHLAIEKTMSFLVAVGNGE-RIRSEG--HCSKVKFEMQGVGFEADF  263 (301)
Q Consensus       193 ~~v~~~~v------~~liDsGAs~~~i~~~~~~~~~~~~~~~~~~~v~~~~g~-~~~~~~--~~~~~~~~~~~~~~~~~~  263 (301)
                      +.|+|+.+      .++||||++..++....+..+.-.....    . ..+|. .+.+..  ..+.+.+.++|..+.+..
T Consensus       194 v~v~g~~~~~~~~~~~iiDTGts~~~lp~~~~~~l~~~~~~~----~-~~~~~~~~~C~~~~~~P~~~f~f~g~~~~i~~  268 (317)
T cd05478         194 VTINGQVVACSGGCQAIVDTGTSLLVGPSSDIANIQSDIGAS----Q-NQNGEMVVNCSSISSMPDVVFTINGVQYPLPP  268 (317)
T ss_pred             EEECCEEEccCCCCEEEECCCchhhhCCHHHHHHHHHHhCCc----c-ccCCcEEeCCcCcccCCcEEEEECCEEEEECH
Confidence            36777654      5899999999999999887753222110    0 01111 112211  123456666666655321


Q ss_pred             -------------EEecCC-CCcEEecHHHHhhcCCeEeeccceEEEEE
Q 036248          264 -------------HILDFS-RADAVLGVQWLEKLGKIITDHKALTMEFT  298 (301)
Q Consensus       264 -------------~v~~~~-~~d~ILG~dwL~~~~~i~id~~~~~~~~~  298 (301)
                                   .+.+.. .-..|||..||+.+-. ..|+.+++|.|.
T Consensus       269 ~~y~~~~~~~C~~~~~~~~~~~~~IlG~~fl~~~y~-vfD~~~~~iG~A  316 (317)
T cd05478         269 SAYILQDQGSCTSGFQSMGLGELWILGDVFIRQYYS-VFDRANNKVGLA  316 (317)
T ss_pred             HHheecCCCEEeEEEEeCCCCCeEEechHHhcceEE-EEeCCCCEEeec
Confidence                         122222 2458999999999995 799999999874

Pepsin, a well-known aspartic protease, is produced by the human gastric mucosa in seven different zymogen isoforms, subdivided into two types: pepsinogen A and pepsinogen C. The prosequence of the zymogens are self cleaved under acidic pH. The mature enzymes are called pepsin A and pepsin C, correspondingly. The well researched porcine pepsin is also in this pepsin A family. Pepsins play an integral role in the digestion process of vertebrates. Pepsins are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. More recently evolved enzymes have similar three-dimensional structures, however their amino acid sequences are more divergent except for the conserved catalytic site motif. Pepsins specifically cleave bonds in peptides which

>cd05474 SAP_like SAPs, pepsin-like proteinases secreted from pathogens to degrade host proteins

Probab=94.53  E-value=0.18  Score=44.07  Aligned_cols=94  Identities=17%  Similarity=0.228  Sum_probs=55.5

Q ss_pred             EEEEEcCCCCccccCHHHHHHcCcceecc-cceEEEEecCceEeeccee-eeEEEEEeceeEEEe---------------
Q 036248          200 LSVLIDTGSTHNYLHPRLAHFLHLAIEKT-MSFLVAVGNGERIRSEGHC-SKVKFEMQGVGFEAD---------------  262 (301)
Q Consensus       200 v~~liDsGAs~~~i~~~~~~~~~~~~~~~-~~~~v~~~~g~~~~~~~~~-~~~~~~~~~~~~~~~---------------  262 (301)
                      ..++||||++..++..+.+..+.-..... ...    .+.....|.... +.+.+.++|..+.+.               
T Consensus       179 ~~~iiDSGt~~~~lP~~~~~~l~~~~~~~~~~~----~~~~~~~C~~~~~p~i~f~f~g~~~~i~~~~~~~~~~~~~~~~  254 (295)
T cd05474         179 LPALLDSGTTLTYLPSDIVDAIAKQLGATYDSD----EGLYVVDCDAKDDGSLTFNFGGATISVPLSDLVLPASTDDGGD  254 (295)
T ss_pred             ccEEECCCCccEeCCHHHHHHHHHHhCCEEcCC----CcEEEEeCCCCCCCEEEEEECCeEEEEEHHHhEeccccCCCCC
Confidence            47999999999999999888753222100 000    000001111110 345555555444321               


Q ss_pred             ----EEEecCCCCcEEecHHHHhhcCCeEeeccceEEEEE
Q 036248          263 ----FHILDFSRADAVLGVQWLEKLGKIITDHKALTMEFT  298 (301)
Q Consensus       263 ----~~v~~~~~~d~ILG~dwL~~~~~i~id~~~~~~~~~  298 (301)
                          +.+.+...-..|||.+||+.+-. ..|+.+++|.|.
T Consensus       255 ~~C~~~i~~~~~~~~iLG~~fl~~~y~-vfD~~~~~ig~a  293 (295)
T cd05474         255 GACYLGIQPSTSDYNILGDTFLRSAYV-VYDLDNNEISLA  293 (295)
T ss_pred             CCeEEEEEeCCCCcEEeChHHhhcEEE-EEECCCCEEEee
Confidence                12222222468999999999995 899999999874

SAPs (Secreted aspartic proteinases) are secreted from a group of pathogenic fungi, predominantly Candida species. They are secreted from the pathogen to degrade host proteins. SAP is one of the most significant extracellular hydrolytic enzymes produced by C. albicans. SAP proteins, encoded by a family of 10 SAP genes. All 10 SAP genes of C. albicans encode preproenzymes, approximately 60 amino acid longer than the mature enzyme, which are processed when transported via the secretory pathway. The mature enzymes contain sequence motifs typical for all aspartyl proteinases, including the two conserved aspartate residues other active site and conserved cysteine residues implicated in the maintenance of the three-dimensional structure. Most Sap proteins contain putative N-glycosylation sites, but it remains to be determined which Sap proteins are glycosylated. This family of aspartate proteases

>cd05485 Cathepsin_D_like Cathepsin_D_like, pepsin family of proteinases

Probab=94.50  E-value=0.28  Score=43.81  Aligned_cols=92  Identities=18%  Similarity=0.179  Sum_probs=54.3

Q ss_pred             EEEEcCCCCccccCHHHHHHcCcceecccceEEEEecCc-eEeecc--eeeeEEEEEeceeEEEe---------------
Q 036248          201 SVLIDTGSTHNYLHPRLAHFLHLAIEKTMSFLVAVGNGE-RIRSEG--HCSKVKFEMQGVGFEAD---------------  262 (301)
Q Consensus       201 ~~liDsGAs~~~i~~~~~~~~~~~~~~~~~~~v~~~~g~-~~~~~~--~~~~~~~~~~~~~~~~~---------------  262 (301)
                      .++||||++..++..+.++.+.-..... .  +  .++. .+.+..  ..+.+.+.+++..+.+.               
T Consensus       212 ~~iiDSGtt~~~lP~~~~~~l~~~~~~~-~--~--~~~~~~~~C~~~~~~p~i~f~fgg~~~~i~~~~yi~~~~~~~~~~  286 (329)
T cd05485         212 QAIADTGTSLIAGPVDEIEKLNNAIGAK-P--I--IGGEYMVNCSAIPSLPDITFVLGGKSFSLTGKDYVLKVTQMGQTI  286 (329)
T ss_pred             EEEEccCCcceeCCHHHHHHHHHHhCCc-c--c--cCCcEEEeccccccCCcEEEEECCEEeEEChHHeEEEecCCCCCE
Confidence            6999999999999998877652211110 0  0  0111 111211  12345556665554432               


Q ss_pred             EE--Ee--c---CCCCcEEecHHHHhhcCCeEeeccceEEEEE
Q 036248          263 FH--IL--D---FSRADAVLGVQWLEKLGKIITDHKALTMEFT  298 (301)
Q Consensus       263 ~~--v~--~---~~~~d~ILG~dwL~~~~~i~id~~~~~~~~~  298 (301)
                      +.  +.  +   ..+-..|||..||+.+-. ..|+.+++|.|.
T Consensus       287 C~~~~~~~~~~~~~~~~~IlG~~fl~~~y~-vFD~~~~~ig~a  328 (329)
T cd05485         287 CLSGFMGIDIPPPAGPLWILGDVFIGKYYT-EFDLGNNRVGFA  328 (329)
T ss_pred             EeeeEEECcCCCCCCCeEEEchHHhccceE-EEeCCCCEEeec
Confidence            11  11  1   112358999999999995 799999999874

Cathepsin D is the major aspartic proteinase of the lysosomal compartment where it functions in protein catabolism. It is a member of the pepsin family of proteinases. This enzyme is distinguished from other members of the pepsin family by two features that are characteristic of lysosomal hydrolases. First, mature Cathepsin D is found predominantly in a two-chain form due to a posttranslational cleavage event. Second, it contains phosphorylated, N-linked oligosaccharides that target the enzyme to lysosomes via mannose-6-phosphate receptors. Cathepsin D preferentially attacks peptide bonds flanked by bulky hydrophobic amino acids and its pH optimum is between pH 2.8 and 4.0. Two active site aspartic acid residues are essential for the catalytic activity of aspartic proteinases. Like other aspartic proteinases, Cathepsin D is a bilobed molecule; the two evolutionary related lobes are mostly made up of beta-sheets an

>cd06098 phytepsin Phytepsin, a plant homolog of mammalian lysosomal pepsins

Probab=94.19  E-value=0.31  Score=43.26  Aligned_cols=101  Identities=14%  Similarity=0.202  Sum_probs=57.0

Q ss_pred             EEcCEe-------EEEEEcCCCCccccCHHHHHHcCcce--ec---ccceEEEEecCceEeecceeeeEEEEEec-eeEE
Q 036248          194 KINNKP-------LSVLIDTGSTHNYLHPRLAHFLHLAI--EK---TMSFLVAVGNGERIRSEGHCSKVKFEMQG-VGFE  260 (301)
Q Consensus       194 ~v~~~~-------v~~liDsGAs~~~i~~~~~~~~~~~~--~~---~~~~~v~~~~g~~~~~~~~~~~~~~~~~~-~~~~  260 (301)
                      .|+|+.       ..++||||++..++..+++..+....  ..   ...+.+.+ +|..+.+...  ..-+.... ..-.
T Consensus       198 ~v~g~~~~~~~~~~~aivDTGTs~~~lP~~~~~~i~~~~~C~~~~~~P~i~f~f-~g~~~~l~~~--~yi~~~~~~~~~~  274 (317)
T cd06098         198 LIGGKSTGFCAGGCAAIADSGTSLLAGPTTIVTQINSAVDCNSLSSMPNVSFTI-GGKTFELTPE--QYILKVGEGAAAQ  274 (317)
T ss_pred             EECCEEeeecCCCcEEEEecCCcceeCCHHHHHhhhccCCccccccCCcEEEEE-CCEEEEEChH--HeEEeecCCCCCE
Confidence            566654       35999999999999999988775322  11   12344444 2333322211  00011100 0001


Q ss_pred             E--eEEEecC---CCCcEEecHHHHhhcCCeEeeccceEEEEE
Q 036248          261 A--DFHILDF---SRADAVLGVQWLEKLGKIITDHKALTMEFT  298 (301)
Q Consensus       261 ~--~~~v~~~---~~~d~ILG~dwL~~~~~i~id~~~~~~~~~  298 (301)
                      .  .+...+.   .+-..|||-.||+.+-. ..|+.+++|.|.
T Consensus       275 C~~~~~~~~~~~~~~~~~IlGd~Flr~~y~-VfD~~~~~iGfA  316 (317)
T cd06098         275 CISGFTALDVPPPRGPLWILGDVFMGAYHT-VFDYGNLRVGFA  316 (317)
T ss_pred             EeceEEECCCCCCCCCeEEechHHhcccEE-EEeCCCCEEeec
Confidence            1  1111221   12347999999999995 799999999874

Phytepsin, a plant homolog of mammalian lysosomal pepsins, resides in grains, roots, stems, leaves and flowers. Phytepsin may participate in metabolic turnover and in protein processing events. In addition, it highly expressed in several plant tissues undergoing apoptosis. Phytepsin contains an internal region consisting of about 100 residues not present in animal or microbial pepsins. This region is thus called a plant specific insert. The insert is highly similar to saponins, which are lysosomal sphingolipid-activating proteins in mammalian cells. The saponin-like domain may have a role in the vacuolar targeting of phytepsin. Phytepsin, as its animal counterparts, possesses a topology typical of all aspartic proteases. They are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe has probably evolved fro

>cd06097 Aspergillopepsin_like Aspergillopepsin_like, aspartic proteases of fungal origin

Probab=94.16  E-value=0.076  Score=46.17  Aligned_cols=79  Identities=16%  Similarity=0.190  Sum_probs=48.1

Q ss_pred             eEEEEEcCCCCccccCHHHHHHcCcceecccceEEEEecCc-eEeecceeeeEEEEEeceeEEEeEEEecCCCCcEEecH
Q 036248          199 PLSVLIDTGSTHNYLHPRLAHFLHLAIEKTMSFLVAVGNGE-RIRSEGHCSKVKFEMQGVGFEADFHILDFSRADAVLGV  277 (301)
Q Consensus       199 ~v~~liDsGAs~~~i~~~~~~~~~~~~~~~~~~~v~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~d~ILG~  277 (301)
                      ...++||||++..++..+.++.+.-...   ........|. .+.+....+.+.+.+                 ..|||.
T Consensus       198 ~~~~iiDSGTs~~~lP~~~~~~l~~~l~---g~~~~~~~~~~~~~C~~~~P~i~f~~-----------------~~ilGd  257 (278)
T cd06097         198 GFSAIADTGTTLILLPDAIVEAYYSQVP---GAYYDSEYGGWVFPCDTTLPDLSFAV-----------------FSILGD  257 (278)
T ss_pred             CceEEeecCCchhcCCHHHHHHHHHhCc---CCcccCCCCEEEEECCCCCCCEEEEE-----------------EEEEcc
Confidence            3469999999999999887766532210   0000001121 122221112222222                 579999


Q ss_pred             HHHhhcCCeEeeccceEEEEE
Q 036248          278 QWLEKLGKIITDHKALTMEFT  298 (301)
Q Consensus       278 dwL~~~~~i~id~~~~~~~~~  298 (301)
                      +||+.+=. ..|+.+++|.|.
T Consensus       258 ~fl~~~y~-vfD~~~~~ig~A  277 (278)
T cd06097         258 VFLKAQYV-VFDVGGPKLGFA  277 (278)
T ss_pred             hhhCceeE-EEcCCCceeeec
Confidence            99999996 799999999874

The members of this family are aspartic proteases of fungal origin, including aspergillopepsin, rhizopuspepsin, endothiapepsin, and rodosporapepsin. The various fungal species in this family may be the most economically important genus of fungi. They may serve as virulence factors or as industrial aids. For example, Aspergillopepsin from A. fumigatus is involved in invasive aspergillosis owing to its elastolytic activity and Aspergillopepsins from the mold A. saitoi are used in fermentation industry. Aspartic proteinases are a group of proteolytic enzymes in which the scissile peptide bond is attacked by a nucleophilic water molecule activated by two aspartic residues in a DT(S)G motif at the active site. They have a similar fold composed of two beta-barrel domains. Between the N-terminal and C-terminal domains, each of which contributes one catalytic aspartic residue, there is an extended active-

>cd05471 pepsin_like Pepsin-like aspartic proteases, bilobal enzymes that cleave bonds in peptides at acidic pH

Probab=93.77  E-value=0.098  Score=45.23  Aligned_cols=79  Identities=16%  Similarity=0.231  Sum_probs=49.8

Q ss_pred             eEEEEEcCCCCccccCHHHHHHcCcceecccceEEEEecCceEee--cceeeeEEEEEeceeEEEeEEEecCCCCcEEec
Q 036248          199 PLSVLIDTGSTHNYLHPRLAHFLHLAIEKTMSFLVAVGNGERIRS--EGHCSKVKFEMQGVGFEADFHILDFSRADAVLG  276 (301)
Q Consensus       199 ~v~~liDsGAs~~~i~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~--~~~~~~~~~~~~~~~~~~~~~v~~~~~~d~ILG  276 (301)
                      ...++||||++..++..+.+..+--........   .-......+  ....+.+.+.+                 ..|||
T Consensus       202 ~~~~iiDsGt~~~~lp~~~~~~l~~~~~~~~~~---~~~~~~~~~~~~~~~p~i~f~f-----------------~~ilG  261 (283)
T cd05471         202 GGGAIVDSGTSLIYLPSSVYDAILKALGAAVSS---SDGGYGVDCSPCDTLPDITFTF-----------------LWILG  261 (283)
T ss_pred             CcEEEEecCCCCEeCCHHHHHHHHHHhCCcccc---cCCcEEEeCcccCcCCCEEEEE-----------------EEEcc
Confidence            457999999999999999988875433211100   000000000  01111222222                 79999


Q ss_pred             HHHHhhcCCeEeeccceEEEEE
Q 036248          277 VQWLEKLGKIITDHKALTMEFT  298 (301)
Q Consensus       277 ~dwL~~~~~i~id~~~~~~~~~  298 (301)
                      .+||+.+-. ..|+.+++|.|.
T Consensus       262 ~~fl~~~y~-vfD~~~~~igfa  282 (283)
T cd05471         262 DVFLRNYYT-VFDLDNNRIGFA  282 (283)
T ss_pred             HhhhhheEE-EEeCCCCEEeec
Confidence            999999995 899999999874

Pepsin-like aspartic proteases are found in mammals, plants, fungi and bacteria. These well known and extensively characterized enzymes include pepsins, chymosin, renin, cathepsins, and fungal aspartic proteases. Several have long been known to be medically (renin, cathepsin D and E, pepsin) or commercially (chymosin) important. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Aspartate residue, with an extended active site cleft localized between the two lobes of the molecule. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. Most members of the pepsin family specifically cleave bonds in peptides that are at least six residues in length, with hydrophobic residu

>cd05486 Cathespin_E Cathepsin E, non-lysosomal aspartic protease

Probab=93.48  E-value=0.36  Score=42.77  Aligned_cols=98  Identities=14%  Similarity=0.226  Sum_probs=57.2

Q ss_pred             EEcCEeE------EEEEcCCCCccccCHHHHHHcCcceecccceEEEEecCce-Eeecc--eeeeEEEEEeceeEEEe--
Q 036248          194 KINNKPL------SVLIDTGSTHNYLHPRLAHFLHLAIEKTMSFLVAVGNGER-IRSEG--HCSKVKFEMQGVGFEAD--  262 (301)
Q Consensus       194 ~v~~~~v------~~liDsGAs~~~i~~~~~~~~~~~~~~~~~~~v~~~~g~~-~~~~~--~~~~~~~~~~~~~~~~~--  262 (301)
                      .|+|+.+      .++||||++..++..+.++.+.-....      ...+|.. +.+..  ..+.+.+.++|..+.+.  
T Consensus       187 ~v~g~~~~~~~~~~aiiDTGTs~~~lP~~~~~~l~~~~~~------~~~~~~~~~~C~~~~~~p~i~f~f~g~~~~l~~~  260 (316)
T cd05486         187 QVGGTVIFCSDGCQAIVDTGTSLITGPSGDIKQLQNYIGA------TATDGEYGVDCSTLSLMPSVTFTINGIPYSLSPQ  260 (316)
T ss_pred             EEecceEecCCCCEEEECCCcchhhcCHHHHHHHHHHhCC------cccCCcEEEeccccccCCCEEEEECCEEEEeCHH
Confidence            5666533      599999999999999877765211100      0011211 12211  12345666666554431  


Q ss_pred             -------------EE--EecC-----CCCcEEecHHHHhhcCCeEeeccceEEEEE
Q 036248          263 -------------FH--ILDF-----SRADAVLGVQWLEKLGKIITDHKALTMEFT  298 (301)
Q Consensus       263 -------------~~--v~~~-----~~~d~ILG~dwL~~~~~i~id~~~~~~~~~  298 (301)
                                   +.  +...     .+-..|||..||+.+-. ..|+.+++|.|.
T Consensus       261 ~y~~~~~~~~~~~C~~~~~~~~~~~~~~~~~ILGd~flr~~y~-vfD~~~~~IGfA  315 (316)
T cd05486         261 AYTLEDQSDGGGYCSSGFQGLDIPPPAGPLWILGDVFIRQYYS-VFDRGNNRVGFA  315 (316)
T ss_pred             HeEEecccCCCCEEeeEEEECCCCCCCCCeEEEchHHhcceEE-EEeCCCCEeecc
Confidence                         10  1111     11247999999999995 799999999874

Cathepsin E is an intracellular, non-lysosomal aspartic protease expressed in a variety of cells and tissues. The protease has proposed physiological roles in antigen presentation by the MHC class II system, in the biogenesis of the vasoconstrictor peptide endothelin, and in neurodegeneration associated with brain ischemia and aging. Cathepsin E is the only A1 aspartic protease that exists as a homodimer with a disulfide bridge linking the two monomers. Like many other aspartic proteases, it is synthesized as a zymogen which is catalytically inactive towards its natural substrates at neutral pH and which auto-activates in an acidic environment. The overall structure follows the general fold of aspartic proteases of the A1 family, it is composed of two structurally similar beta barrel lobes, each lobe contributing an aspartic acid residue to form a catalytic dyad that acts to cleave the substrate peptide bond. The catalyt

>PF03564 DUF1759: Protein of unknown function (DUF1759); InterPro: IPR005312 This is a small family of proteins of unknown function

Probab=93.48  E-value=0.47  Score=36.81  Aligned_cols=87  Identities=15%  Similarity=0.219  Sum_probs=67.7

Q ss_pred             CchhHHHHHHHHHH----HHHHHHHHHhhcCCChh-hh-HHHHHhcCcc-----cccHHHHHHHHHHHHHHhhc----CC
Q 036248            2 TNEDMQTRYRALEE----QAALTRAIESRFGPSSY-IN-HRATLFKLTQ-----TSSVEAYQSTFENICNRVTN----LH   66 (301)
Q Consensus         2 ~~g~A~~W~~~~~~----w~~f~~~l~~~F~~~~~-~~-~~~~l~~lkQ-----~~sv~~Y~~~f~~L~~~~~~----~~   66 (301)
                      +.|.|+.=..++..    |+...+.|..+|+.+.. .. +..+|.++..     ...+..+++.++.++..+..    .+
T Consensus        38 L~G~A~~~i~~~~~~~~~Y~~a~~~L~~~yg~~~~i~~~~~~~l~~l~~~~~~d~~~L~~~~~~v~~~i~~L~~lg~~~~  117 (145)
T PF03564_consen   38 LKGEAKELIRGLPLSEENYEEAWELLEERYGNPRRIIQALLEELRNLPPISNDDPEALRSLVDKVNNCIRALKALGVNVD  117 (145)
T ss_pred             hcchHHHHHHcccccchhhHHHHHHHHHHhCCchHHHHHHHHHHhccccccchhHHHHHHHHHHHHHHHHHHHHcCCCCC
Confidence            45777777766643    99999999999999876 33 6788888874     46778888888888887754    36


Q ss_pred             HHHHHHHHHhcCCHHHHHhccc
Q 036248           67 PDAILDCFISGLKPTIQNELAI   88 (301)
Q Consensus        67 e~~~~~~f~~GL~~~i~~~l~~   88 (301)
                      +..++..++.-|++.++.....
T Consensus       118 ~~~l~~~i~~KLp~~~~~~w~~  139 (145)
T PF03564_consen  118 DPLLISIILSKLPPEIREKWEE  139 (145)
T ss_pred             CHHHHHHHHHHCCHHHHHHHHH
Confidence            6789999999999999876543

>PF03539 Spuma_A9PTase: Spumavirus aspartic protease (A9); InterPro: IPR001641 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=93.37  E-value=0.69  Score=35.54  Aligned_cols=80  Identities=19%  Similarity=0.244  Sum_probs=50.5

Q ss_pred             EcCEeEEEEEcCCCCccccCHHHHHHcCcceecccceEEEEecCceEeecceeeeEEEEEeceeEEEeEEEecCCCCcEE
Q 036248          195 INNKPLSVLIDTGSTHNYLHPRLAHFLHLAIEKTMSFLVAVGNGERIRSEGHCSKVKFEMQGVGFEADFHILDFSRADAV  274 (301)
Q Consensus       195 v~~~~v~~liDsGAs~~~i~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~d~I  274 (301)
                      |.|..+.+.-||||+.++|...|....    .+.....+.+..|...   ..+-=+.|.++|.....+++..+   ||.|
T Consensus         1 ikg~~l~~~wDsga~ITCiP~~fl~~E----~Pi~~~~i~Tihg~~~---~~vYYl~fKi~grkv~aEVi~s~---~dy~   70 (163)
T PF03539_consen    1 IKGTKLKGHWDSGAQITCIPESFLEEE----QPIGKTLIKTIHGEKE---QDVYYLTFKINGRKVEAEVIASP---YDYI   70 (163)
T ss_dssp             ETTEEEEEEE-TT-SSEEEEGGGTTT-------SEEEEEE-SS-EEE---EEEEEEEEEESS-EEEEEEEEES---SSSE
T ss_pred             CCCceeeEEecCCCeEEEccHHHhCcc----ccccceEEEEecCcee---ccEEEEEEEEcCeEEEEEEecCc---cceE
Confidence            467889999999999999999875432    3556778888888753   22234788999998888877665   3433


Q ss_pred             e----cHHHHhhcC
Q 036248          275 L----GVQWLEKLG  284 (301)
Q Consensus       275 L----G~dwL~~~~  284 (301)
                      |    -.||+.+..
T Consensus        71 li~p~diPw~~~~p   84 (163)
T PF03539_consen   71 LISPSDIPWYKKKP   84 (163)
T ss_dssp             EE-TTT-HHHHS--
T ss_pred             EEcccccccccCCC
Confidence            3    358988765

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of aspartic peptidases belong to MEROPS peptidase family A9 (spumapepsin family, clan AA). Foamy viruses are single-stranded enveloped retroviruses that have been noted to infect monkeys, cats and humans. In the human virus, the aspartic protease is encoded by the retroviral gag gene [], and in monkeys by the pol gene []. At present, the virus has not been proven to cause any particular disease. However, studies have shown Human foamy virus causes neurological disorders in infected mice []. It is not clear whether the Foamy virus/spumavirus proteases share a common evolutionary origin with other aspartic proteases. ; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis; PDB: 2JYS_A.

>cd05472 cnd41_like Chloroplast Nucleoids DNA-binding Protease, catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase

Probab=92.97  E-value=0.76  Score=40.30  Aligned_cols=27  Identities=11%  Similarity=0.105  Sum_probs=23.8

Q ss_pred             cEEecHHHHhhcCCeEeeccceEEEEEe
Q 036248          272 DAVLGVQWLEKLGKIITDHKALTMEFTY  299 (301)
Q Consensus       272 d~ILG~dwL~~~~~i~id~~~~~~~~~~  299 (301)
                      -.|||..||+.+-. ..|+.+++|.|..
T Consensus       270 ~~ilG~~fl~~~~v-vfD~~~~~igfa~  296 (299)
T cd05472         270 LSIIGNVQQQTFRV-VYDVAGGRIGFAP  296 (299)
T ss_pred             CEEEchHHccceEE-EEECCCCEEeEec
Confidence            47999999999994 7999999999864

Chloroplast Nucleoids DNA-binding Protease catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco) in senescent leaves of tobacco. Antisense tobacco with reduced amount of CND41 maintained green leaves and constant protein levels, especially Rubisco. CND41 has DNA-binding as well as aspartic protease activities. The pepsin-like aspartic protease domain is located at the C-terminus of the protein. The enzyme is characterized by having two aspartic protease catalytic site motifs, the Asp-Thr-Gly-Ser in the N-terminal and Asp-Ser-Gly-Ser in the C-terminal region. Aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. This fami

>PTZ00147 plasmepsin-1; Provisional

Probab=92.13  E-value=0.67  Score=43.34  Aligned_cols=95  Identities=14%  Similarity=0.215  Sum_probs=54.3

Q ss_pred             EEEEEcCCCCccccCHHHHHHcCcceecccceEEEEecCceEeec-ceeeeEEEEEeceeEEEe---------------E
Q 036248          200 LSVLIDTGSTHNYLHPRLAHFLHLAIEKTMSFLVAVGNGERIRSE-GHCSKVKFEMQGVGFEAD---------------F  263 (301)
Q Consensus       200 v~~liDsGAs~~~i~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~-~~~~~~~~~~~~~~~~~~---------------~  263 (301)
                      ..++||||.+..++..+.+..+.-....   ..+...+.-.+.|. ...+.+.+.+++..+.+.               |
T Consensus       333 ~~aIiDSGTsli~lP~~~~~ai~~~l~~---~~~~~~~~y~~~C~~~~lP~~~f~f~g~~~~L~p~~yi~~~~~~~~~~C  409 (453)
T PTZ00147        333 ANVIVDSGTSVITVPTEFLNKFVESLDV---FKVPFLPLYVTTCNNTKLPTLEFRSPNKVYTLEPEYYLQPIEDIGSALC  409 (453)
T ss_pred             eeEEECCCCchhcCCHHHHHHHHHHhCC---eecCCCCeEEEeCCCCCCCeEEEEECCEEEEECHHHheeccccCCCcEE
Confidence            5699999999999999988764221100   00000000011111 112345555555443221               1


Q ss_pred             --EEec--CCCCcEEecHHHHhhcCCeEeeccceEEEEE
Q 036248          264 --HILD--FSRADAVLGVQWLEKLGKIITDHKALTMEFT  298 (301)
Q Consensus       264 --~v~~--~~~~d~ILG~dwL~~~~~i~id~~~~~~~~~  298 (301)
                        .+.+  ...-..|||..||+.+-. ..|+.+++|.|.
T Consensus       410 ~~~i~~~~~~~~~~ILGd~FLr~~Yt-VFD~~n~rIGfA  447 (453)
T PTZ00147        410 MLNIIPIDLEKNTFILGDPFMRKYFT-VFDYDNHTVGFA  447 (453)
T ss_pred             EEEEEECCCCCCCEEECHHHhccEEE-EEECCCCEEEEE
Confidence              1222  222357999999999996 799999999885

>PF14244 UBN2_3: gag-polypeptide of LTR copia-type

Probab=92.01  E-value=0.27  Score=38.64  Aligned_cols=42  Identities=26%  Similarity=0.405  Sum_probs=32.0

Q ss_pred             HHHHHHhhcCCCh-h---hhHHHHHhcCcc-cccHHHHHHHHHHHHH
Q 036248           19 LTRAIESRFGPSS-Y---INHRATLFKLTQ-TSSVEAYQSTFENICN   60 (301)
Q Consensus        19 f~~~l~~~F~~~~-~---~~~~~~l~~lkQ-~~sv~~Y~~~f~~L~~   60 (301)
                      +-+.|..+|.... .   .+++.+|..++| +.||.+|+.+|..|..
T Consensus        87 ~W~~L~~~f~~~~~~~r~~~L~~~l~~~kq~~~sv~ey~~~lk~l~~  133 (152)
T PF14244_consen   87 IWDALKERFSQKSNASRVFQLRNELHSLKQGDKSVTEYFNKLKSLWQ  133 (152)
T ss_pred             HHHHHHHHhhcccHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHhH
Confidence            3345556676555 2   236789999999 9999999999999993

>cd05488 Proteinase_A_fungi Fungal Proteinase A , aspartic proteinase superfamily

Probab=91.95  E-value=0.79  Score=40.71  Aligned_cols=93  Identities=22%  Similarity=0.279  Sum_probs=55.4

Q ss_pred             EEEEEcCCCCccccCHHHHHHcCcceecccceEEEEecCce-Eeecc--eeeeEEEEEeceeEEEeE-------------
Q 036248          200 LSVLIDTGSTHNYLHPRLAHFLHLAIEKTMSFLVAVGNGER-IRSEG--HCSKVKFEMQGVGFEADF-------------  263 (301)
Q Consensus       200 v~~liDsGAs~~~i~~~~~~~~~~~~~~~~~~~v~~~~g~~-~~~~~--~~~~~~~~~~~~~~~~~~-------------  263 (301)
                      ..++||||++..++..+.++.+.-......     ..++.. +.+..  ..+.+.+.+++..+.+..             
T Consensus       206 ~~~ivDSGtt~~~lp~~~~~~l~~~~~~~~-----~~~~~~~~~C~~~~~~P~i~f~f~g~~~~i~~~~y~~~~~g~C~~  280 (320)
T cd05488         206 TGAAIDTGTSLIALPSDLAEMLNAEIGAKK-----SWNGQYTVDCSKVDSLPDLTFNFDGYNFTLGPFDYTLEVSGSCIS  280 (320)
T ss_pred             CeEEEcCCcccccCCHHHHHHHHHHhCCcc-----ccCCcEEeeccccccCCCEEEEECCEEEEECHHHheecCCCeEEE
Confidence            358999999999999998877532111000     001111 11111  123466666666554321             


Q ss_pred             EEec--C---CCCcEEecHHHHhhcCCeEeeccceEEEEE
Q 036248          264 HILD--F---SRADAVLGVQWLEKLGKIITDHKALTMEFT  298 (301)
Q Consensus       264 ~v~~--~---~~~d~ILG~dwL~~~~~i~id~~~~~~~~~  298 (301)
                      .+..  .   .+...|||..||+.+-. ..|+.+.+|.|.
T Consensus       281 ~~~~~~~~~~~~~~~ilG~~fl~~~y~-vfD~~~~~iG~a  319 (320)
T cd05488         281 AFTGMDFPEPVGPLAIVGDAFLRKYYS-VYDLGNNAVGLA  319 (320)
T ss_pred             EEEECcCCCCCCCeEEEchHHhhheEE-EEeCCCCEEeec
Confidence            1111  1   12358999999999995 799999999874

Fungal Proteinase A, a proteolytic enzyme distributed among a variety of organisms, is a member of the aspartic proteinase superfamily. In Saccharomyces cerevisiae, targeted to the vacuole as a zymogen, activation of proteinases A at acidic pH can occur by two different pathways: a one-step process to release mature proteinase A, involving the intervention of proteinase B, or a step-wise pathway via the auto-activation product known as pseudo-proteinase A. Once active, S. cerevisiae proteinase A is essential to the activities of other yeast vacuolar hydrolases, including proteinase B and carboxypeptidase Y. The mature enzyme is bilobal, with each lobe providing one of the two catalytically essential aspartic acid residues in the active site. The crystal structure of free proteinase A shows that flap loop is atypically pointing directly into the S(1) pocket of the enzyme. Proteinase A preferentially hydro

>PTZ00013 plasmepsin 4 (PM4); Provisional

Probab=91.63  E-value=0.82  Score=42.72  Aligned_cols=94  Identities=13%  Similarity=0.180  Sum_probs=53.2

Q ss_pred             EEEEEcCCCCccccCHHHHHHcCcceecccceEEEEecCc-eEeec-ceeeeEEEEEeceeEEEe---------------
Q 036248          200 LSVLIDTGSTHNYLHPRLAHFLHLAIEKTMSFLVAVGNGE-RIRSE-GHCSKVKFEMQGVGFEAD---------------  262 (301)
Q Consensus       200 v~~liDsGAs~~~i~~~~~~~~~~~~~~~~~~~v~~~~g~-~~~~~-~~~~~~~~~~~~~~~~~~---------------  262 (301)
                      ..++||||++..++..+.+..+--.....   .+. ..|. .+.|. ...+.+.+.+++..+...               
T Consensus       332 ~~aIlDSGTSli~lP~~~~~~i~~~l~~~---~~~-~~~~y~~~C~~~~lP~i~F~~~g~~~~L~p~~Yi~~~~~~~~~~  407 (450)
T PTZ00013        332 ANVIVDSGTTTITAPSEFLNKFFANLNVI---KVP-FLPFYVTTCDNKEMPTLEFKSANNTYTLEPEYYMNPLLDVDDTL  407 (450)
T ss_pred             cceEECCCCccccCCHHHHHHHHHHhCCe---ecC-CCCeEEeecCCCCCCeEEEEECCEEEEECHHHheehhccCCCCe
Confidence            35899999999999998776652111000   000 0010 01111 112334455544433221               


Q ss_pred             --EEEecC--CCCcEEecHHHHhhcCCeEeeccceEEEEE
Q 036248          263 --FHILDF--SRADAVLGVQWLEKLGKIITDHKALTMEFT  298 (301)
Q Consensus       263 --~~v~~~--~~~d~ILG~dwL~~~~~i~id~~~~~~~~~  298 (301)
                        +.+.+.  .+-..|||-.||+.+-. ..|+.+.+|.|.
T Consensus       408 C~~~i~~~~~~~~~~ILGd~FLr~~Y~-VFD~~n~rIGfA  446 (450)
T PTZ00013        408 CMITMLPVDIDDNTFILGDPFMRKYFT-VFDYDKESVGFA  446 (450)
T ss_pred             eEEEEEECCCCCCCEEECHHHhccEEE-EEECCCCEEEEE
Confidence              122222  22358999999999995 799999999885

>cd05474 SAP_like SAPs, pepsin-like proteinases secreted from pathogens to degrade host proteins

Probab=90.81  E-value=1.6  Score=37.99  Aligned_cols=70  Identities=23%  Similarity=0.451  Sum_probs=46.0

Q ss_pred             EEEEcC--EeEEEEEcCCCCccccCHHHHHHcCcceecccceEEEEecCceEeecceeeeEEEEEeceeEE-EeEEEecC
Q 036248          192 SAKINN--KPLSVLIDTGSTHNYLHPRLAHFLHLAIEKTMSFLVAVGNGERIRSEGHCSKVKFEMQGVGFE-ADFHILDF  268 (301)
Q Consensus       192 ~~~v~~--~~v~~liDsGAs~~~i~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~  268 (301)
                      .+.|..  +++.+++||||+...|.               +..+..++|+.+  .+...+=.+.+++.... ..|.+...
T Consensus         6 ~i~iGtp~q~~~v~~DTgS~~~wv~---------------~~~~~Y~~g~~~--~G~~~~D~v~~g~~~~~~~~fg~~~~   68 (295)
T cd05474           6 ELSVGTPPQKVTVLLDTGSSDLWVP---------------DFSISYGDGTSA--SGTWGTDTVSIGGATVKNLQFAVANS   68 (295)
T ss_pred             EEEECCCCcEEEEEEeCCCCcceee---------------eeEEEeccCCcE--EEEEEEEEEEECCeEecceEEEEEec
Confidence            345544  78999999999999988               466777776543  33333445666666553 34555543


Q ss_pred             -CCCcEEecHH
Q 036248          269 -SRADAVLGVQ  278 (301)
Q Consensus       269 -~~~d~ILG~d  278 (301)
                       ...|.|||+-
T Consensus        69 ~~~~~GilGLg   79 (295)
T cd05474          69 TSSDVGVLGIG   79 (295)
T ss_pred             CCCCcceeeEC
Confidence             4588998854

SAPs (Secreted aspartic proteinases) are secreted from a group of pathogenic fungi, predominantly Candida species. They are secreted from the pathogen to degrade host proteins. SAP is one of the most significant extracellular hydrolytic enzymes produced by C. albicans. SAP proteins, encoded by a family of 10 SAP genes. All 10 SAP genes of C. albicans encode preproenzymes, approximately 60 amino acid longer than the mature enzyme, which are processed when transported via the secretory pathway. The mature enzymes contain sequence motifs typical for all aspartyl proteinases, including the two conserved aspartate residues other active site and conserved cysteine residues implicated in the maintenance of the three-dimensional structure. Most Sap proteins contain putative N-glycosylation sites, but it remains to be determined which Sap proteins are glycosylated. This family of aspartate proteases

>cd05490 Cathepsin_D2 Cathepsin_D2, pepsin family of proteinases

Probab=90.70  E-value=0.83  Score=40.61  Aligned_cols=93  Identities=18%  Similarity=0.228  Sum_probs=53.9

Q ss_pred             EEEEEcCCCCccccCHHHHHHcCcceecccceEEEEecCc-eEeecc--eeeeEEEEEeceeEEEe--------------
Q 036248          200 LSVLIDTGSTHNYLHPRLAHFLHLAIEKTMSFLVAVGNGE-RIRSEG--HCSKVKFEMQGVGFEAD--------------  262 (301)
Q Consensus       200 v~~liDsGAs~~~i~~~~~~~~~~~~~~~~~~~v~~~~g~-~~~~~~--~~~~~~~~~~~~~~~~~--------------  262 (301)
                      ..++||||++..++..+.+..+.-.....     ...+|. .+.+..  ..+.+.+.+++..+.+.              
T Consensus       207 ~~aiiDSGTt~~~~p~~~~~~l~~~~~~~-----~~~~~~~~~~C~~~~~~P~i~f~fgg~~~~l~~~~y~~~~~~~~~~  281 (325)
T cd05490         207 CEAIVDTGTSLITGPVEEVRALQKAIGAV-----PLIQGEYMIDCEKIPTLPVISFSLGGKVYPLTGEDYILKVSQRGTT  281 (325)
T ss_pred             CEEEECCCCccccCCHHHHHHHHHHhCCc-----cccCCCEEecccccccCCCEEEEECCEEEEEChHHeEEeccCCCCC
Confidence            46999999999999998887653211100     000111 111111  11335555555544321              


Q ss_pred             -EE--Ee--cC---CCCcEEecHHHHhhcCCeEeeccceEEEEE
Q 036248          263 -FH--IL--DF---SRADAVLGVQWLEKLGKIITDHKALTMEFT  298 (301)
Q Consensus       263 -~~--v~--~~---~~~d~ILG~dwL~~~~~i~id~~~~~~~~~  298 (301)
                       +.  +.  +.   .+...|||..||+.+-. ..|+.+++|.|.
T Consensus       282 ~C~~~~~~~~~~~~~~~~~ilGd~flr~~y~-vfD~~~~~IGfA  324 (325)
T cd05490         282 ICLSGFMGLDIPPPAGPLWILGDVFIGRYYT-VFDRDNDRVGFA  324 (325)
T ss_pred             EEeeEEEECCCCCCCCceEEEChHhheeeEE-EEEcCCcEeecc
Confidence             11  11  11   12357999999999995 799999999874

Cathepsin D is the major aspartic proteinase of the lysosomal compartment where it functions in protein catabolism. It is a member of the pepsin family of proteinases. This enzyme is distinguished from other members of the pepsin family by two features that are characteristic of lysosomal hydrolases. First, mature Cathepsin D is found predominantly in a two-chain form due to a posttranslational cleavage event. Second, it contains phosphorylated, N-linked oligosaccharides that target the enzyme to lysosomes via mannose-6-phosphate receptors. Cathepsin D preferentially attacks peptide bonds flanked by bulky hydrophobic amino acids and its pH optimum is between pH 2.8 and 4.0. Two active site aspartic acid residues are essential for the catalytic activity of aspartic proteinases. Like other aspartic proteinases, Cathepsin D is a bilobed molecule; the two evolutionary related lobes are mostly made up of beta-sheets and flank

>PF00026 Asp: Eukaryotic aspartyl protease The Prosite entry also includes Pfam:PF00077

Probab=90.66  E-value=0.92  Score=39.86  Aligned_cols=85  Identities=20%  Similarity=0.353  Sum_probs=50.2

Q ss_pred             EEEEEc--CEeEEEEEcCCCCccccCHHHHHH-------cCccee-------cccceEEEEecCceEeecceeeeEEEEE
Q 036248          191 LSAKIN--NKPLSVLIDTGSTHNYLHPRLAHF-------LHLAIE-------KTMSFLVAVGNGERIRSEGHCSKVKFEM  254 (301)
Q Consensus       191 i~~~v~--~~~v~~liDsGAs~~~i~~~~~~~-------~~~~~~-------~~~~~~v~~~~g~~~~~~~~~~~~~~~~  254 (301)
                      +.+.|.  ++++.++|||||+..+|...-+..       ......       ...+..+..++|. +..  ....-.+.+
T Consensus         4 ~~v~iGtp~q~~~~~iDTGS~~~wv~~~~c~~~~~~~~~~~y~~~~S~t~~~~~~~~~~~y~~g~-~~G--~~~~D~v~i   80 (317)
T PF00026_consen    4 INVTIGTPPQTFRVLIDTGSSDTWVPSSNCNSCSSCASSGFYNPSKSSTFSNQGKPFSISYGDGS-VSG--NLVSDTVSI   80 (317)
T ss_dssp             EEEEETTTTEEEEEEEETTBSSEEEEBTTECSHTHHCTSC-BBGGGSTTEEEEEEEEEEEETTEE-EEE--EEEEEEEEE
T ss_pred             EEEEECCCCeEEEEEEecccceeeeceeccccccccccccccccccccccccceeeeeeeccCcc-ccc--ccccceEee
Confidence            345665  799999999999988876432111       111111       1234556666666 433  333456777


Q ss_pred             eceeEE-EeEEEecC--------CCCcEEecHH
Q 036248          255 QGVGFE-ADFHILDF--------SRADAVLGVQ  278 (301)
Q Consensus       255 ~~~~~~-~~~~v~~~--------~~~d~ILG~d  278 (301)
                      ++.... ..|.++..        ..+|.|||+-
T Consensus        81 g~~~~~~~~f~~~~~~~~~~~~~~~~~GilGLg  113 (317)
T PF00026_consen   81 GGLTIPNQTFGLADSYSGDPFSPIPFDGILGLG  113 (317)
T ss_dssp             TTEEEEEEEEEEEEEEESHHHHHSSSSEEEE-S
T ss_pred             eeccccccceecccccccccccccccccccccc
Confidence            887765 56655554        2479999986

; InterPro: IPR001461 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of aspartic peptidases belong to MEROPS peptidase family A1 (pepsin family, clan AA). The type example is pepsin A from Homo sapiens (Human) . More than 70 aspartic peptidases, from all from eukaryotic organisms, have been identified. These include pepsins, cathepsins, and renins. The enzymes are synthesised with signal peptides, and the proenzymes are secreted or passed into the lysosomal/endosomal system, where acidification leads to autocatalytic activation. Most members of the pepsin family specifically cleave bonds in peptides that are at least six residues in length, with hydrophobic residues in both the P1 and P1' positions []. Crystallography has shown the active site to form a groove across the junction of the two lobes, with an extended loop projecting over the cleft to form an 11-residue flap, which encloses substrates and inhibitors within the active site []. Specificity is determined by several hydrophobic residues surrounding the catalytic aspartates, and by three residues in the flap. Cysteine residues are well conserved within the pepsin family, pepsin itself containing three disulphide loops. The first loop is found in all but the fungal enzymes, and is usually around five residues in length, but is longer in barrierpepsin and candidapepsin; the second loop is also small and found only in the animal enzymes; and the third loop is the largest, found in all members of the family, except for the cysteine-free polyporopepsin. The loops are spread unequally throughout the two lobes, suggesting that they formed after the initial gene duplication and fusion event []. This family does not include the retroviral nor retrotransposon aspartic proteases which are much smaller and appear to be homologous to the single domain aspartic proteases.; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis; PDB: 1CZI_E 3CMS_A 1CMS_A 4CMS_A 1YG9_A 2NR6_A 3LIZ_A 1FLH_A 3UTL_A 1QRP_E ....

>PF14893 PNMA: PNMA

Probab=90.30  E-value=1.1  Score=39.76  Aligned_cols=77  Identities=18%  Similarity=0.252  Sum_probs=61.3

Q ss_pred             CchhHHHHHHHHHH------HHHHHHHHHhhcCCChhhh-HHHHHhcCcc--cccHHHHHHHHHHHHHHhhc---C----
Q 036248            2 TNEDMQTRYRALEE------QAALTRAIESRFGPSSYIN-HRATLFKLTQ--TSSVEAYQSTFENICNRVTN---L----   65 (301)
Q Consensus         2 ~~g~A~~W~~~~~~------w~~f~~~l~~~F~~~~~~~-~~~~l~~lkQ--~~sv~~Y~~~f~~L~~~~~~---~----   65 (301)
                      +.|.|..+.+.+..      -.+++++|..+|+...... +..+|.+..|  +|++.+|+.+.+.|..++-.   +    
T Consensus       212 L~GpA~~~~r~l~~~nP~~t~~~~l~aL~~~Fg~~es~~~~~~kf~~~~Q~~~E~ls~yv~RlE~lLqkav~k~a~~p~~  291 (331)
T PF14893_consen  212 LRGPALDSRRKLQKKNPKQTAQDCLKALGQVFGSSESRETLEAKFLNTFQEPGEKLSAYVKRLESLLQKAVEKGAIKPSE  291 (331)
T ss_pred             cccHHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCcccHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHhcCCCccc
Confidence            46888888888854      9999999999999998854 8899988888  99999999999999988622   2    


Q ss_pred             CHHHHHHHHHhcC
Q 036248           66 HPDAILDCFISGL   78 (301)
Q Consensus        66 ~e~~~~~~f~~GL   78 (301)
                      .+...+.+++.|-
T Consensus       292 adq~rl~q~l~~a  304 (331)
T PF14893_consen  292 ADQVRLRQVLSGA  304 (331)
T ss_pred             cCHHHHHHHHccC
Confidence            4556666666443

>PLN03146 aspartyl protease family protein; Provisional

Probab=90.16  E-value=0.57  Score=43.57  Aligned_cols=27  Identities=19%  Similarity=0.073  Sum_probs=23.7

Q ss_pred             cEEecHHHHhhcCCeEeeccceEEEEEe
Q 036248          272 DAVLGVQWLEKLGKIITDHKALTMEFTY  299 (301)
Q Consensus       272 d~ILG~dwL~~~~~i~id~~~~~~~~~~  299 (301)
                      ..|||..+++.+. |..|..+++|.|.-
T Consensus       399 ~~IlG~~~q~~~~-vvyDl~~~~igFa~  425 (431)
T PLN03146        399 IAIFGNLAQMNFL-VGYDLESKTVSFKP  425 (431)
T ss_pred             ceEECeeeEeeEE-EEEECCCCEEeeec
Confidence            3799999999999 58999999998854

>cd05470 pepsin_retropepsin_like Cellular and retroviral pepsin-like aspartate proteases

Probab=90.06  E-value=1.4  Score=32.06  Aligned_cols=82  Identities=21%  Similarity=0.295  Sum_probs=44.1

Q ss_pred             EEEcC--EeEEEEEcCCCCccccCHHHHHHcC------c--ce-----e-cccceEEEEecCceEeecceeeeEEEEEec
Q 036248          193 AKINN--KPLSVLIDTGSTHNYLHPRLAHFLH------L--AI-----E-KTMSFLVAVGNGERIRSEGHCSKVKFEMQG  256 (301)
Q Consensus       193 ~~v~~--~~v~~liDsGAs~~~i~~~~~~~~~------~--~~-----~-~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~  256 (301)
                      +.|..  +++.+++||||+...|..+-+....      .  +.     . ......+..++|...   +....-.|.+++
T Consensus         3 i~vGtP~q~~~~~~DTGSs~~Wv~~~~c~~~~~~~~~~~~~~~~sst~~~~~~~~~~~Y~~g~~~---g~~~~D~v~ig~   79 (109)
T cd05470           3 IGIGTPPQTFNVLLDTGSSNLWVPSVDCQSLAIYSHSSYDDPSASSTYSDNGCTFSITYGTGSLS---GGLSTDTVSIGD   79 (109)
T ss_pred             EEeCCCCceEEEEEeCCCCCEEEeCCCCCCcccccccccCCcCCCCCCCCCCcEEEEEeCCCeEE---EEEEEEEEEECC
Confidence            44543  7899999999998888765332211      1  00     0 123556666776532   222233455665


Q ss_pred             eeEE-EeEEEecC--------CCCcEEecH
Q 036248          257 VGFE-ADFHILDF--------SRADAVLGV  277 (301)
Q Consensus       257 ~~~~-~~~~v~~~--------~~~d~ILG~  277 (301)
                      ..+. ..|.+...        ...|.|||+
T Consensus        80 ~~~~~~~fg~~~~~~~~~~~~~~~~GilGL  109 (109)
T cd05470          80 IEVVGQAFGCATDEPGATFLPALFDGILGL  109 (109)
T ss_pred             EEECCEEEEEEEecCCccccccccccccCC
Confidence            5432 23433332        246778874

This family includes both cellular and retroviral pepsin-like aspartate proteases. The cellular pepsin and pepsin-like enzymes are twice as long as their retroviral counterparts. The cellular pepsin-like aspartic proteases are found in mammals, plants, fungi and bacteria. These well known and extensively characterized enzymes include pepsins, chymosin, rennin, cathepsins, and fungal aspartic proteases. Several have long been known to be medically (rennin, cathepsin D and E, pepsin) or commercially (chymosin) important. The eukaryotic pepsin-like proteases contain two domains possessing similar topological features. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except in the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. The eukaryotic pepsin-like proteases have two active site

>cd05487 renin_like Renin stimulates production of angiotensin and thus affects blood pressure

Probab=89.72  E-value=1.6  Score=38.82  Aligned_cols=91  Identities=16%  Similarity=0.238  Sum_probs=51.7

Q ss_pred             EEEEcCCCCccccCHHHHHHcCcceecccceEEEEecCc-eEeecc--eeeeEEEEEeceeEEEe---------------
Q 036248          201 SVLIDTGSTHNYLHPRLAHFLHLAIEKTMSFLVAVGNGE-RIRSEG--HCSKVKFEMQGVGFEAD---------------  262 (301)
Q Consensus       201 ~~liDsGAs~~~i~~~~~~~~~~~~~~~~~~~v~~~~g~-~~~~~~--~~~~~~~~~~~~~~~~~---------------  262 (301)
                      .++||||++..++..+.++.+.-.......      .+. .+.+..  ..+.+.+.+++..+.+.               
T Consensus       209 ~aiiDSGts~~~lP~~~~~~l~~~~~~~~~------~~~y~~~C~~~~~~P~i~f~fgg~~~~v~~~~yi~~~~~~~~~~  282 (326)
T cd05487         209 TAVVDTGASFISGPTSSISKLMEALGAKER------LGDYVVKCNEVPTLPDISFHLGGKEYTLSSSDYVLQDSDFSDKL  282 (326)
T ss_pred             EEEECCCccchhCcHHHHHHHHHHhCCccc------CCCEEEeccccCCCCCEEEEECCEEEEeCHHHhEEeccCCCCCE
Confidence            589999999999998877665221110000      011 111111  11234455555443321               


Q ss_pred             E--EEe--cC---CCCcEEecHHHHhhcCCeEeeccceEEEEE
Q 036248          263 F--HIL--DF---SRADAVLGVQWLEKLGKIITDHKALTMEFT  298 (301)
Q Consensus       263 ~--~v~--~~---~~~d~ILG~dwL~~~~~i~id~~~~~~~~~  298 (301)
                      +  .+.  +.   .+-..|||.+||+.+-. ..|+.+++|.|.
T Consensus       283 C~~~~~~~~~~~~~~~~~ilG~~flr~~y~-vfD~~~~~IGfA  324 (326)
T cd05487         283 CTVAFHAMDIPPPTGPLWVLGATFIRKFYT-EFDRQNNRIGFA  324 (326)
T ss_pred             EEEEEEeCCCCCCCCCeEEEehHHhhccEE-EEeCCCCEEeee
Confidence            1  111  11   11247999999999995 899999999885

Renin, also known as angiotensinogenase, is a circulating enzyme that participates in the renin-angiotensin system that mediates extracellular volume, arterial vasoconstriction, and consequently mean arterial blood pressure. The enzyme is secreted by the kidneys from specialized juxtaglomerular cells in response to decreases in glomerular filtration rate (a consequence of low blood volume), diminished filtered sodium chloride and sympathetic nervous system innervation. The enzyme circulates in the blood stream and hydrolyzes angiotensinogen secreted from the liver into the peptide angiotensin I. Angiotensin I is further cleaved in the lungs by endothelial bound angiotensin converting enzyme (ACE) into angiotensin II, the final active peptide. Renin is a member of the aspartic protease family. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Aspartate r

>PTZ00165 aspartyl protease; Provisional

Probab=89.17  E-value=0.81  Score=43.17  Aligned_cols=27  Identities=22%  Similarity=0.303  Sum_probs=23.8

Q ss_pred             CcEEecHHHHhhcCCeEeeccceEEEEE
Q 036248          271 ADAVLGVQWLEKLGKIITDHKALTMEFT  298 (301)
Q Consensus       271 ~d~ILG~dwL~~~~~i~id~~~~~~~~~  298 (301)
                      -..|||-.||+++-. ..|..+++|.|.
T Consensus       418 ~~~ILGd~Flr~yy~-VFD~~n~rIGfA  444 (482)
T PTZ00165        418 PLFVLGNNFIRKYYS-IFDRDHMMVGLV  444 (482)
T ss_pred             ceEEEchhhheeEEE-EEeCCCCEEEEE
Confidence            347999999999996 799999999985

>cd05475 nucellin_like Nucellins, plant aspartic proteases specifically expressed in nucellar cells during degradation

Probab=88.54  E-value=1  Score=39.05  Aligned_cols=93  Identities=18%  Similarity=0.271  Sum_probs=54.4

Q ss_pred             EEEcCEe-----EEEEEcCCCCccccCHHHHHHcCcceecccceEEEEecC---ceEeecceeeeEEEEEeceeEEEeEE
Q 036248          193 AKINNKP-----LSVLIDTGSTHNYLHPRLAHFLHLAIEKTMSFLVAVGNG---ERIRSEGHCSKVKFEMQGVGFEADFH  264 (301)
Q Consensus       193 ~~v~~~~-----v~~liDsGAs~~~i~~~~~~~~~~~~~~~~~~~v~~~~g---~~~~~~~~~~~~~~~~~~~~~~~~~~  264 (301)
                      +.|+|+.     ..++||||++..++..+.+    +     .++.+.+.++   ....+...  +.-+.....  ..-+.
T Consensus       166 i~vg~~~~~~~~~~~ivDTGTt~t~lp~~~y----~-----p~i~~~f~~~~~~~~~~l~~~--~y~~~~~~~--~~Cl~  232 (273)
T cd05475         166 LLFNGQPTGGKGLEVVFDSGSSYTYFNAQAY----F-----KPLTLKFGKGWRTRLLEIPPE--NYLIISEKG--NVCLG  232 (273)
T ss_pred             EEECCEECcCCCceEEEECCCceEEcCCccc----c-----ccEEEEECCCCceeEEEeCCC--ceEEEcCCC--CEEEE
Confidence            3666653     4689999999999998865    2     2455555433   12222211  110110000  01122


Q ss_pred             EecCCC----CcEEecHHHHhhcCCeEeeccceEEEEEe
Q 036248          265 ILDFSR----ADAVLGVQWLEKLGKIITDHKALTMEFTY  299 (301)
Q Consensus       265 v~~~~~----~d~ILG~dwL~~~~~i~id~~~~~~~~~~  299 (301)
                      .+...+    -..|||..||+.+-. ..|+.+++|.|..
T Consensus       233 ~~~~~~~~~~~~~ilG~~~l~~~~~-vfD~~~~riGfa~  270 (273)
T cd05475         233 ILNGSEIGLGNTNIIGDISMQGLMV-IYDNEKQQIGWVR  270 (273)
T ss_pred             EecCCCcCCCceEEECceEEEeeEE-EEECcCCEeCccc
Confidence            332221    247999999999994 8999999998864

Nucellins are important regulators of nucellar cell's progressive degradation after ovule fertilization. This degradation is a characteristic of programmed cell death. Nucellins are plant aspartic proteases specifically expressed in nucellar cells during degradation. The enzyme is characterized by having two aspartic protease catalytic site motifs, the Asp-Thr-Gly-Ser in the N-terminal and Asp-Ser-Gly-Ser in the C-terminal region, and two other regions nearly identical to two regions of plant aspartic proteases. Aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. Although the three-dimensional structures of the two lobes are very similar, the amino acid sequences are more d

>PTZ00147 plasmepsin-1; Provisional

Probab=87.73  E-value=2.8  Score=39.24  Aligned_cols=85  Identities=19%  Similarity=0.279  Sum_probs=50.2

Q ss_pred             EEEEc--CEeEEEEEcCCCCccccCHHHHHHc------Ccce------e-cccceEEEEecCceEeecceeeeEEEEEec
Q 036248          192 SAKIN--NKPLSVLIDTGSTHNYLHPRLAHFL------HLAI------E-KTMSFLVAVGNGERIRSEGHCSKVKFEMQG  256 (301)
Q Consensus       192 ~~~v~--~~~v~~liDsGAs~~~i~~~~~~~~------~~~~------~-~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~  256 (301)
                      .+.|.  .+++.+++||||+...|...-+...      ....      . ...+..+..++|. +  .+....=.|.+++
T Consensus       143 ~I~IGTP~Q~f~Vi~DTGSsdlWVps~~C~~~~C~~~~~yd~s~SsT~~~~~~~f~i~Yg~Gs-v--sG~~~~DtVtiG~  219 (453)
T PTZ00147        143 EAKLGDNGQKFNFIFDTGSANLWVPSIKCTTEGCETKNLYDSSKSKTYEKDGTKVEMNYVSGT-V--SGFFSKDLVTIGN  219 (453)
T ss_pred             EEEECCCCeEEEEEEeCCCCcEEEeecCCCcccccCCCccCCccCcceEECCCEEEEEeCCCC-E--EEEEEEEEEEECC
Confidence            34554  6889999999999998865432211      1111      0 1235667777775 2  3443344567777


Q ss_pred             eeEEEeEEEec----------CCCCcEEecHHH
Q 036248          257 VGFEADFHILD----------FSRADAVLGVQW  279 (301)
Q Consensus       257 ~~~~~~~~v~~----------~~~~d~ILG~dw  279 (301)
                      ......|..+.          ....|.|||+-|
T Consensus       220 ~~v~~qF~~~~~~~~f~~~~~~~~~DGILGLG~  252 (453)
T PTZ00147        220 LSVPYKFIEVTDTNGFEPFYTESDFDGIFGLGW  252 (453)
T ss_pred             EEEEEEEEEEEeccCcccccccccccceecccC
Confidence            76654444332          124799999976

>PTZ00013 plasmepsin 4 (PM4); Provisional

Probab=87.17  E-value=1.6  Score=40.82  Aligned_cols=84  Identities=18%  Similarity=0.365  Sum_probs=49.4

Q ss_pred             EEEc--CEeEEEEEcCCCCccccCHHHHHHcC------ccee-------cccceEEEEecCceEeecceeeeEEEEEece
Q 036248          193 AKIN--NKPLSVLIDTGSTHNYLHPRLAHFLH------LAIE-------KTMSFLVAVGNGERIRSEGHCSKVKFEMQGV  257 (301)
Q Consensus       193 ~~v~--~~~v~~liDsGAs~~~i~~~~~~~~~------~~~~-------~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~  257 (301)
                      +.|.  ++++.+++||||+...|...-+...+      ....       ......+..++|. +  .+....=.|.+++.
T Consensus       143 i~IGTP~Q~f~vi~DTGSsdlWV~s~~C~~~~C~~~~~yd~s~SsT~~~~~~~~~i~YG~Gs-v--~G~~~~Dtv~iG~~  219 (450)
T PTZ00013        143 GEVGDNHQKFMLIFDTGSANLWVPSKKCDSIGCSIKNLYDSSKSKSYEKDGTKVDITYGSGT-V--KGFFSKDLVTLGHL  219 (450)
T ss_pred             EEECCCCeEEEEEEeCCCCceEEecccCCccccccCCCccCccCcccccCCcEEEEEECCce-E--EEEEEEEEEEECCE
Confidence            3554  68999999999999998754332111      1111       1134567777775 3  33333445667776


Q ss_pred             eEEEeEEEec-C---------CCCcEEecHHH
Q 036248          258 GFEADFHILD-F---------SRADAVLGVQW  279 (301)
Q Consensus       258 ~~~~~~~v~~-~---------~~~d~ILG~dw  279 (301)
                      +....|.++. .         ..+|.|||+-|
T Consensus       220 ~~~~~f~~~~~~~~~~~~~~~~~~dGIlGLg~  251 (450)
T PTZ00013        220 SMPYKFIEVTDTDDLEPIYSSSEFDGILGLGW  251 (450)
T ss_pred             EEccEEEEEEeccccccceecccccceecccC
Confidence            6554443331 1         24799999965

>cd05476 pepsin_A_like_plant Chroloplast Nucleoids DNA-binding Protease and Nucellin, pepsin-like aspartic proteases from plants

Probab=86.40  E-value=2.6  Score=36.22  Aligned_cols=72  Identities=24%  Similarity=0.382  Sum_probs=44.9

Q ss_pred             EEEc--CEeEEEEEcCCCCccccCHHHHHHcCcceecccceEEEEecCceEeecceeeeEEEEEece--eE-EEeEEEec
Q 036248          193 AKIN--NKPLSVLIDTGSTHNYLHPRLAHFLHLAIEKTMSFLVAVGNGERIRSEGHCSKVKFEMQGV--GF-EADFHILD  267 (301)
Q Consensus       193 ~~v~--~~~v~~liDsGAs~~~i~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~--~~-~~~~~v~~  267 (301)
                      +.|.  .+.+.+++||||+...|..             ....+..++|+.+  .+....=.+.+++.  .. ...|.+..
T Consensus         6 i~iGtP~q~~~v~~DTGSs~~wv~~-------------~~~~~~Y~dg~~~--~G~~~~D~v~~g~~~~~~~~~~Fg~~~   70 (265)
T cd05476           6 LSIGTPPQPFSLIVDTGSDLTWTQC-------------CSYEYSYGDGSST--SGVLATETFTFGDSSVSVPNVAFGCGT   70 (265)
T ss_pred             EecCCCCcceEEEecCCCCCEEEcC-------------CceEeEeCCCcee--eeeEEEEEEEecCCCCccCCEEEEecc
Confidence            4454  4788999999999998864             3456666666644  33333445566665  22 23454444


Q ss_pred             C------CCCcEEecHHH
Q 036248          268 F------SRADAVLGVQW  279 (301)
Q Consensus       268 ~------~~~d~ILG~dw  279 (301)
                      .      ...|.|||+-+
T Consensus        71 ~~~~~~~~~~~GIlGLg~   88 (265)
T cd05476          71 DNEGGSFGGADGILGLGR   88 (265)
T ss_pred             cccCCccCCCCEEEECCC
Confidence            3      24899999854

This family contains pepsin like aspartic proteases from plants including Chloroplast Nucleoids DNA-binding Protease and Nucellin. Chloroplast Nucleoids DNA-binding Protease catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco) in senescent leaves of tobacco and Nucellins are important regulators of nucellar cell's progressive degradation after ovule fertilization. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. The enzymes specifically cleave bonds in peptides which

>PF00607 Gag_p24: gag gene protein p24 (core nucleocapsid protein); InterPro: IPR000721 The Gag protein from retroviruses, also known as p24, forms the inner protein layer of the nucleocapsid

Probab=85.92  E-value=0.91  Score=37.65  Aligned_cols=67  Identities=10%  Similarity=0.119  Sum_probs=50.6

Q ss_pred             HHHhcCcc--cccHHHHHHHHHHHHHHhhc---CCHHHHHHHHHhcCCHHHHHhcccCC-CCcHHHHHHHHHH
Q 036248           37 ATLFKLTQ--TSSVEAYQSTFENICNRVTN---LHPDAILDCFISGLKPTIQNELAIHK-PSNLRDAIALAKL  103 (301)
Q Consensus        37 ~~l~~lkQ--~~sv~~Y~~~f~~L~~~~~~---~~e~~~~~~f~~GL~~~i~~~l~~~~-p~tl~~~~~~A~~  103 (301)
                      ..|..++|  +|+..+|+.||..-+.+...   ..+..+....+..-+++.|..+..-. -.+|+|.+..+..
T Consensus       123 ~~~~~I~QGp~Epf~dFv~rl~~a~~~~~~~~~~~~~~~~~L~~eNAN~~C~~~~~~l~~~~~lee~~~~C~~  195 (206)
T PF00607_consen  123 ESFTKIKQGPKEPFADFVDRLQKAIRREQGENEVKNILIRQLAYENANPDCRRIIRPLGKDAPLEEMIRACQG  195 (206)
T ss_dssp             STGGGH-S-TTSHHHHHHHHHHHHHHCSSSTHHHHHHHHHHHHHHTS-HHHHHHHHHH-TTSTHHHHHHHTTT
T ss_pred             ccHHHhhhccccchHHHHHHHHHHHhhcccccchhhHHHHHhhhccchHHHHHHHHccCCCCCHHHHHHHhhc
Confidence            35778899  89999999999998888753   24556677778999999999887654 4799998877654

This protein performs highly complex orchestrated tasks during the assembly, budding, maturation and infection stages of the viral replication cycle. During viral assembly, the proteins form membrane associations and self-associations that ultimately result in budding of an immature virion from the infected cell. Gag precursors also function during viral assembly to selectively bind and package two plus strands of genomic RNA. ELISA tests for p24 is the most commonly used method to demonstrate virus replication both in vivo and in vitro.; GO: 0016032 viral reproduction; PDB: 1BMX_A 1SJH_C 1SJE_C 1U57_A 1FGL_B 1G03_A 2XT1_A 2JO0_A 2L6E_A 2HJL_C ....

>cd06097 Aspergillopepsin_like Aspergillopepsin_like, aspartic proteases of fungal origin

Probab=85.61  E-value=4.5  Score=34.99  Aligned_cols=86  Identities=17%  Similarity=0.298  Sum_probs=47.3

Q ss_pred             EEEEcC--EeEEEEEcCCCCccccCHHHHH-----HcC-cce------e--cccceEEEEecCceEeecceeeeEEEEEe
Q 036248          192 SAKINN--KPLSVLIDTGSTHNYLHPRLAH-----FLH-LAI------E--KTMSFLVAVGNGERIRSEGHCSKVKFEMQ  255 (301)
Q Consensus       192 ~~~v~~--~~v~~liDsGAs~~~i~~~~~~-----~~~-~~~------~--~~~~~~v~~~~g~~~~~~~~~~~~~~~~~  255 (301)
                      .+.|..  +++.+++||||+..+|...-+.     ..+ ...      .  ...+..+..++|+.+.  +....=.|.++
T Consensus         4 ~i~vGtP~Q~~~v~~DTGS~~~wv~~~~c~~~~~~~~~~y~~~~Sst~~~~~~~~~~i~Y~~G~~~~--G~~~~D~v~ig   81 (278)
T cd06097           4 PVKIGTPPQTLNLDLDTGSSDLWVFSSETPAAQQGGHKLYDPSKSSTAKLLPGATWSISYGDGSSAS--GIVYTDTVSIG   81 (278)
T ss_pred             eEEECCCCcEEEEEEeCCCCceeEeeCCCCchhhccCCcCCCccCccceecCCcEEEEEeCCCCeEE--EEEEEEEEEEC
Confidence            345655  8899999999999888654221     111 111      0  1235666667775332  22233345666


Q ss_pred             ceeEE-EeEEEec--------CCCCcEEecHHH
Q 036248          256 GVGFE-ADFHILD--------FSRADAVLGVQW  279 (301)
Q Consensus       256 ~~~~~-~~~~v~~--------~~~~d~ILG~dw  279 (301)
                      +.... ..|.+..        ....|.|||+-+
T Consensus        82 ~~~~~~~~fg~~~~~~~~~~~~~~~dGilGLg~  114 (278)
T cd06097          82 GVEVPNQAIELATAVSASFFSDTASDGLLGLAF  114 (278)
T ss_pred             CEEECCeEEEEEeecCccccccccccceeeecc
Confidence            65432 2233322        135899999855

The members of this family are aspartic proteases of fungal origin, including aspergillopepsin, rhizopuspepsin, endothiapepsin, and rodosporapepsin. The various fungal species in this family may be the most economically important genus of fungi. They may serve as virulence factors or as industrial aids. For example, Aspergillopepsin from A. fumigatus is involved in invasive aspergillosis owing to its elastolytic activity and Aspergillopepsins from the mold A. saitoi are used in fermentation industry. Aspartic proteinases are a group of proteolytic enzymes in which the scissile peptide bond is attacked by a nucleophilic water molecule activated by two aspartic residues in a DT(S)G motif at the active site. They have a similar fold composed of two beta-barrel domains. Between the N-terminal and C-terminal domains, each of which contributes one catalytic aspartic residue, there is an extended active-

>cd05473 beta_secretase_like Beta-secretase, aspartic-acid protease important in the pathogenesis of Alzheimer's disease

Probab=84.75  E-value=3.4  Score=37.42  Aligned_cols=26  Identities=19%  Similarity=0.287  Sum_probs=23.4

Q ss_pred             EEecHHHHhhcCCeEeeccceEEEEEe
Q 036248          273 AVLGVQWLEKLGKIITDHKALTMEFTY  299 (301)
Q Consensus       273 ~ILG~dwL~~~~~i~id~~~~~~~~~~  299 (301)
                      .|||..||+.+-. ..|..+++|.|..
T Consensus       319 ~ILG~~flr~~yv-vfD~~~~rIGfa~  344 (364)
T cd05473         319 TVIGAVIMEGFYV-VFDRANKRVGFAV  344 (364)
T ss_pred             eEEeeeeEcceEE-EEECCCCEEeeEe
Confidence            6999999999995 7999999998854

Beta-secretase also called BACE (beta-site of APP cleaving enzyme) or memapsin-2. Beta-secretase is an aspartic-acid protease important in the pathogenesis of Alzheimer's disease, and in the formation of myelin sheaths in peripheral nerve cells. It cleaves amyloid precursor protein (APP) to reveal the N-terminus of the beta-amyloid peptides. The beta-amyloid peptides are the major components of the amyloid plaques formed in the brain of patients with Alzheimer's disease (AD). Since BACE mediates one of the cleavages responsible for generation of AD, it is regarded as a potential target for pharmacological intervention in AD. Beta-secretase is a member of pepsin family of aspartic proteases. Same as other aspartic proteases, beta-secretase is a bilobal enzyme, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two

>PF02093 Gag_p30: Gag P30 core shell protein; InterPro: IPR003036 P30 is essential for viral assembly []

Probab=82.78  E-value=0.97  Score=37.09  Aligned_cols=69  Identities=19%  Similarity=0.294  Sum_probs=21.3

Q ss_pred             HHHhcCcc--cccHHHHHHHHHHHHHHhhcCCH------HHHHHHHHhcCCHHHHHhcccC---CCCcHHHHHHHHHHHH
Q 036248           37 ATLFKLTQ--TSSVEAYQSTFENICNRVTNLHP------DAILDCFISGLKPTIQNELAIH---KPSNLRDAIALAKLIE  105 (301)
Q Consensus        37 ~~l~~lkQ--~~sv~~Y~~~f~~L~~~~~~~~e------~~~~~~f~~GL~~~i~~~l~~~---~p~tl~~~~~~A~~~e  105 (301)
                      .++..+.|  +||..+|++|+++-.++...++.      ..+...|+.---++||..|...   .-.++++|+..|.+..
T Consensus       127 sKv~~v~Qg~~EsPs~FLeRL~ea~r~yTp~dP~~~~~~~~v~~~Fi~QsapDIrkKLq~~eg~~~~~l~~Ll~~A~kVf  206 (211)
T PF02093_consen  127 SKVREVTQGPNESPSAFLERLREAYRKYTPFDPESPEGQASVAMSFITQSAPDIRKKLQKLEGLQGKTLSELLKEAEKVF  206 (211)
T ss_dssp             -S--TTTTTGGGHHHHHHHHHHHHHHHTS---------------------------------------------------
T ss_pred             HHHHHHHhCCCCCHHHHHHHHHHHHHhcCCCCCCCCccchhHHHHHHHhccHHHHHHHHhhcCcccCCHHHHHHHHHHHH
Confidence            56677788  89999999999999888755422      2677789988889999988764   5689999999998754

Cleavage of P70 in vitro can be accompanied by a shift from a concentrically coiled internal strand ("immature") to a collapsed ("mature") form of the virus core [].; GO: 0019068 virion assembly; PDB: 3BP9_U 1U7K_D 2Y4Z_A 1BM4_A.

>PF14541 TAXi_C: Xylanase inhibitor C-terminal; PDB: 3AUP_D 3HD8_A 1T6G_A 1T6E_X 2B42_A 3VLB_A 3VLA_A

Probab=82.42  E-value=11  Score=29.59  Aligned_cols=97  Identities=15%  Similarity=0.230  Sum_probs=52.8

Q ss_pred             EEEEcCCCCccccCHHHHHHcCcce-------------e--cccceEEEEecCceEeecceeeeEEEEEe-ceeEEE---
Q 036248          201 SVLIDTGSTHNYLHPRLAHFLHLAI-------------E--KTMSFLVAVGNGERIRSEGHCSKVKFEMQ-GVGFEA---  261 (301)
Q Consensus       201 ~~liDsGAs~~~i~~~~~~~~~~~~-------------~--~~~~~~v~~~~g~~~~~~~~~~~~~~~~~-~~~~~~---  261 (301)
                      -++||||++.+++.......+.-..             .  .....+........-......+.+.+.+. |..+..   
T Consensus        31 ~~iiDSGT~~T~L~~~~y~~l~~al~~~~~~~~~~~~~~~~~~~~~Cy~~~~~~~~~~~~~~P~i~l~F~~ga~l~l~~~  110 (161)
T PF14541_consen   31 GTIIDSGTTYTYLPPPVYDALVQALDAQMGAPGVSREAPPFSGFDLCYNLSSFGVNRDWAKFPTITLHFEGGADLTLPPE  110 (161)
T ss_dssp             SEEE-SSSSSEEEEHHHHHHHHHHHHHHHHTCT--CEE---TT-S-EEEGGCS-EETTEESS--EEEEETTSEEEEE-HH
T ss_pred             CEEEECCCCccCCcHHHHHHHHHHHHHHhhhcccccccccCCCCCceeeccccccccccccCCeEEEEEeCCcceeeecc
Confidence            4789999999999998777652111             0  11122222222100011122345555554 333221   


Q ss_pred             -----------eEEEecC---CCCcEEecHHHHhhcCCeEeeccceEEEEE
Q 036248          262 -----------DFHILDF---SRADAVLGVQWLEKLGKIITDHKALTMEFT  298 (301)
Q Consensus       262 -----------~~~v~~~---~~~d~ILG~dwL~~~~~i~id~~~~~~~~~  298 (301)
                                 -+.+.+.   .+--.|||...++.+. |..|-.+++|.|.
T Consensus       111 ~y~~~~~~~~~Cla~~~~~~~~~~~~viG~~~~~~~~-v~fDl~~~~igF~  160 (161)
T PF14541_consen  111 NYFVQVSPGVFCLAFVPSDADDDGVSVIGNFQQQNYH-VVFDLENGRIGFA  160 (161)
T ss_dssp             HHEEEECTTEEEESEEEETSTTSSSEEE-HHHCCTEE-EEEETTTTEEEEE
T ss_pred             ceeeeccCCCEEEEEEccCCCCCCcEEECHHHhcCcE-EEEECCCCEEEEe
Confidence                       1122222   4578999999999999 6999999999885

>cd05487 renin_like Renin stimulates production of angiotensin and thus affects blood pressure

Probab=82.36  E-value=11  Score=33.57  Aligned_cols=86  Identities=19%  Similarity=0.295  Sum_probs=48.1

Q ss_pred             EEEEEc--CEeEEEEEcCCCCccccCHHHHH--------HcCccee-------cccceEEEEecCceEeecceeeeEEEE
Q 036248          191 LSAKIN--NKPLSVLIDTGSTHNYLHPRLAH--------FLHLAIE-------KTMSFLVAVGNGERIRSEGHCSKVKFE  253 (301)
Q Consensus       191 i~~~v~--~~~v~~liDsGAs~~~i~~~~~~--------~~~~~~~-------~~~~~~v~~~~g~~~~~~~~~~~~~~~  253 (301)
                      +.+.|.  .+++.+++|||++...|...-+.        .......       ......+..++|. +  .+...+=.+.
T Consensus        11 ~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~C~~~~~~c~~~~~y~~~~SsT~~~~~~~~~~~Yg~g~-~--~G~~~~D~v~   87 (326)
T cd05487          11 GEIGIGTPPQTFKVVFDTGSSNLWVPSSKCSPLYTACVTHNLYDASDSSTYKENGTEFTIHYASGT-V--KGFLSQDIVT   87 (326)
T ss_pred             EEEEECCCCcEEEEEEeCCccceEEccCCCcCcchhhcccCcCCCCCCeeeeECCEEEEEEeCCce-E--EEEEeeeEEE
Confidence            345554  68899999999999999643211        1111110       1234566777775 2  3333344556


Q ss_pred             EeceeEEEeEEEecC--------CCCcEEecHHH
Q 036248          254 MQGVGFEADFHILDF--------SRADAVLGVQW  279 (301)
Q Consensus       254 ~~~~~~~~~~~v~~~--------~~~d~ILG~dw  279 (301)
                      +++......|.+...        ..+|.|||.-+
T Consensus        88 ~g~~~~~~~fg~~~~~~~~~~~~~~~dGilGLg~  121 (326)
T cd05487          88 VGGIPVTQMFGEVTALPAIPFMLAKFDGVLGMGY  121 (326)
T ss_pred             ECCEEeeEEEEEEEeccCCccceeecceEEecCC
Confidence            666554333333221        24789999854

Renin, also known as angiotensinogenase, is a circulating enzyme that participates in the renin-angiotensin system that mediates extracellular volume, arterial vasoconstriction, and consequently mean arterial blood pressure. The enzyme is secreted by the kidneys from specialized juxtaglomerular cells in response to decreases in glomerular filtration rate (a consequence of low blood volume), diminished filtered sodium chloride and sympathetic nervous system innervation. The enzyme circulates in the blood stream and hydrolyzes angiotensinogen secreted from the liver into the peptide angiotensin I. Angiotensin I is further cleaved in the lungs by endothelial bound angiotensin converting enzyme (ACE) into angiotensin II, the final active peptide. Renin is a member of the aspartic protease family. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Aspartate r

>cd05489 xylanase_inhibitor_I_like TAXI-I inhibits degradation of xylan in the cell wall

Probab=81.36  E-value=9.4  Score=34.63  Aligned_cols=25  Identities=20%  Similarity=0.309  Sum_probs=22.5

Q ss_pred             EEecHHHHhhcCCeEeeccceEEEEE
Q 036248          273 AVLGVQWLEKLGKIITDHKALTMEFT  298 (301)
Q Consensus       273 ~ILG~dwL~~~~~i~id~~~~~~~~~  298 (301)
                      .|||.-+|+.+. +..|-.+++|.|.
T Consensus       335 ~IlG~~~~~~~~-vvyD~~~~riGfa  359 (362)
T cd05489         335 VVIGGHQMEDNL-LVFDLEKSRLGFS  359 (362)
T ss_pred             EEEeeheecceE-EEEECCCCEeecc
Confidence            599999999999 5899999999875

Xylanase inhibitor-I (TAXI-I) is a member of potent TAXI-type inhibitors of fungal and bacterial family 11 xylanases. Plants developed a diverse battery of defense mechanisms in response to continual challenges by a broad spectrum of pathogenic microorganisms. Their defense arsenal includes inhibitors of cell wall-degrading enzymes, which hinder a possible invasion and colonization by antagonists. Xylanases of fungal and bacterial pathogens are the key enzymes in the degradation of xylan in the cell wall. Plants secrete proteins that inhibit these degradation glycosidases, including xylanase. Surprisingly, TAXI-I displays structural homology with the pepsin-like family of aspartic proteases but is proteolytically nonfunctional, because one or more residues of the essential catalytic triad are absent. The structure of the TAXI-inhibitor, Aspergillus niger xylanase I complex, illustrates the ability

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	301
3s8i_A	148	Protein DDI1 homolog 1; protease, structural genom	1e-12
2i1a_A	148	DNA damage-inducible protein DDI1; acid protease f	2e-09
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-06

>3s8i_A Protein DDI1 homolog 1; protease, structural genomics, structural genomics consortiu retropepsin-like domain, protein turnover, hydrolase; 1.70A {Homo sapiens} Length = 148

 Score = 63.2 bits (153), Expect = 1e-12
 Identities = 21/109 (19%), Positives = 39/109 (35%), Gaps = 1/109 (0%)

Query: 193 AKINNKPLSVLIDTGSTHNYLHPRLAHFLHLAIEKTMSFLVAVGNGERIRSEGHCSKVKF 252
            K+N  PL   +D+G+    +    A   ++       +          R  G     + 
Sbjct: 29  CKVNGHPLKAFVDSGAQMTIMSQACAERCNIMRLVDRRWAGVAKGVGTQRIIGRVHLAQI 88

Query: 253 EMQGVGFEADFHILDFSRADAVLGVQWLEKLGKIITDHKALTMEFTYKG 301
           +++G   +  F IL+    D +LG+  L +    I D K   +     G
Sbjct: 89  QIEGDFLQCSFSILEDQPMDMLLGLDMLRRHQCSI-DLKKNVLVIGTTG 136

>2i1a_A DNA damage-inducible protein DDI1; acid protease fold, dimer, retroviral protease domain, protein turnover; HET: DNA; 2.30A {Saccharomyces cerevisiae} Length = 148

 Score = 54.3 bits (130), Expect = 2e-09
 Identities = 19/97 (19%), Positives = 41/97 (42%), Gaps = 1/97 (1%)

Query: 191 LSAKINNKPLSVLIDTGSTHNYLHPRLAHFLHLAIEKTMSFLVAVGNGERIRSEGHCSKV 250
           ++ +INN P+   +DTG+    +  RLA    L+      F+         +  G   + 
Sbjct: 29  INIEINNYPVKAFVDTGAQTTIMSTRLAKKTGLSRMIDKRFIGEARGVGTGKIIGRIHQA 88

Query: 251 KFEMQGVGFEADFHILDFSRADAVLGVQWLEKLGKII 287
           + +++       F +LD    D ++G+  L++    +
Sbjct: 89  QVKIETQYIPCSFTVLDTD-IDVLIGLDMLKRHLACV 124

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 47.5 bits (112), Expect = 3e-06
 Identities = 54/347 (15%), Positives = 106/347 (30%), Gaps = 116/347 (33%)

Query: 8   TRYRALEEQAALTRAIESRFGPSSYI--------------NHRATLFKLTQTSSV----E 49
            + R    QA L R ++S+   +  +              N    +   T+   V     
Sbjct: 223 IKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLS 282

Query: 50  AYQSTFENICNRVTNLHPD-------AILDCFISGLKPTIQ--NELAIHK-PSNLRDAIA 99
           A  +T  ++ +    L PD         LDC    L   +   N   +     ++RD +A
Sbjct: 283 AATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLA 342

Query: 100 ------------LAKLIE---DKLQSYNQKSISWK----PTNTPIPTTT---------RN 131
                       L  +IE   + L+    + +  +    P +  IPT           ++
Sbjct: 343 TWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKS 402

Query: 132 ETNIRLNPLLPLPPPNPS----NPPKIALPICRLTAVEMQTRQEPSEILQEEEILVE-DT 186
           +  + +N L        S     P +       + ++ ++ + +          +V+   
Sbjct: 403 DVMVVVNKLH-----KYSLVEKQPKE---STISIPSIYLELKVKLENEYALHRSIVDHYN 454

Query: 187 VPKQLSAKINNKPLSVLIDTGSTHNYLHPRLAHFLHLAIEKTMSFLVAVGNGERIRSEGH 246
           +PK      ++  +   +D      Y +  + H  HL           + + E       
Sbjct: 455 IPKTFD---SDDLIPPYLD-----QYFYSHIGH--HLK---------NIEHPE------- 488

Query: 247 CSKVKFEMQGVGFEADFHILDFSRADAVLGVQWLEKLGKIITDHKAL 293
               +  +    F   F  LDF          +LE+  KI  D  A 
Sbjct: 489 ----RMTL----FRMVF--LDFR---------FLEQ--KIRHDSTAW 514

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	301
3s8i_A	148	Protein DDI1 homolog 1; protease, structural genom	99.86
2i1a_A	148	DNA damage-inducible protein DDI1; acid protease f	99.77
1fmb_A	104	EIAV protease; hydrolase (acid proteinase), RNA-di	99.14
3slz_A	132	GAG-Pro-POL polyprotein; beta sheet and dimer, pro	99.09
3ec0_A	99	Protease; HIV-2, inhibitor, hydrolase; HET: GRL; 1	98.89
2hs1_A	99	HIV-1 protease; ultra-high resolution active site	98.86
2hah_A	116	Protease, retropepsin; retroviral, aspartyl, hydro	98.57
3ka2_A	203	[L-Ala51;Gly51']HIV-1 protease; beta-barrel, hydro	98.48
3sqf_A	114	Protease; folded monomer, retropepsin, D-type retr	98.0
3ka2_A	203	[L-Ala51;Gly51']HIV-1 protease; beta-barrel, hydro	97.97
2rsp_A	124	RSV protease; hydrolase(aspartyl proteinase); 2.00	97.84
2pma_A	146	Uncharacterized protein; APC86035.2, protein LPG00	97.77
3lhr_A	93	Zinc finger protein 24; SCAN domain, protein struc	97.42
3liy_A	116	Protease; hydrolase, hydrolase-hydrolase inhibitor	97.39
2fi2_A	94	Zinc finger protein 42; SCAN domain, ZNF-42, MZF-1	97.0
4e6s_A	93	Zinc finger and SCAN domain-containing protein 10;	96.86
1y7q_A	98	AW-1, zinc finger protein 174; SCAN domain, retrov	96.85
2jys_A	107	Protease/reverse transcriptase; retroviral proteas	96.57
1lya_B	241	Cathepsin D; lysosomal aspartic protease; HET: NAG	94.51
1am5_A	324	Pepsin, acid proteinase; aspartyl protease, hydrol	94.45
3cms_A	323	Chymosin B; hydrolase, acid proteinase; 2.00A {Bos	94.18
2apr_A	325	Rhizopuspepsin; hydrolase (aspartic proteinase); 1	94.14
1yg9_A	330	Aspartic protease BLA G 2; allegren, hydrolase, al	94.11
4aa9_A	320	Chymosin; hydrolase, aspartic peptidase, rennet; H	93.8
1tzs_A	351	Cathepsin E; hydrolase, aspartic protease, activat	93.76
1dpj_A	329	Proteinase A; proteinase A, hydrolase-hydrolase in	93.61
3fv3_A	339	SAPP1P-secreted aspartic protease 1; secreted aspa	93.49
3qvc_A	451	Histo-aspartic protease; HAP, plasmepsin, zymogen,	93.47
2x0b_A	383	Renin; hydrolase-hormone complex, hydrolase hormon	93.38
3k1w_A	341	Renin; protease, alternative splicing, aspartyl pr	93.25
1wkr_A	340	Polyporopepsin; hydrolase, hydrolase-hydrolase inh	93.08
1j71_A	334	Candidapepsin, aspartic proteinase; candida tropic	92.85
1oew_A	329	Endothiapepsin; hydrolase, aspartic proteinase mec	92.79
3pvk_A	342	Candidapepsin-2; hydrolase; 1.27A {Candida albican	92.66
1htr_B	329	Gastricsin; aspartyl protease; 1.62A {Homo sapiens	92.62
1bxo_A	323	Protein (penicillopepsin); hydrolase, phosphonate	92.47
1ibq_A	325	Aspergillopepsin; aspartic proteinase, hydrolase;	92.47
1miq_A	375	Plasmepsin; aspartic proteinase zymogen, domain op	92.43
2bju_A	453	Plasmepsin II; aspartic proteinase, drug design, m	92.33
1mpp_A	361	Pepsin; hydrolase(acid proteinase); 2.00A {Rhizomu	92.32
3aup_A	403	SBG7S, BG, basic 7S globulin; pepsin-like fold, pl	92.28
3c9x_A	329	Trichoderma reesei aspartic protease; aspartic pro	92.24
2qzx_A	342	Candidapepsin-5; aspartic proteinase, aspartyl pro	92.19
1izd_A	323	Aspartic proteinase; sugar binding, acid protease,	91.58
1t6e_X	381	Xylanase inhibitor; two beta-barrel domain structu	90.37
3lpj_A	455	Beta-secretase 1; alzheimer'S, aspartyl protease,	90.32
3psg_A	370	Pepsinogen; hydrolase(acid proteinase zymogen); 1.	90.26
3vf3_A	402	Beta-secretase 1; structure-based drug design, hyd	90.13
2jyl_A	105	Capsid protein P24 (Ca); HIV-1, carboxy-terminal,	89.48
3g1g_A	87	GAG polyprotein, capsid protein; alpha-helical bun	88.12
3ds4_A	86	HIV-1 capsid protein; HIV, mutant, polyprotein, co	87.98
2ewy_A	383	Beta-secretase 2; BACE2, aspartic protease, hydrol	87.87
2bju_A	453	Plasmepsin II; aspartic proteinase, drug design, m	87.6
3qvc_A	451	Histo-aspartic protease; HAP, plasmepsin, zymogen,	87.46
1eoq_A	96	GAG polyprotein capsid protein P27; virus/viral pr	87.43
2x0b_A	383	Renin; hydrolase-hormone complex, hydrolase hormon	87.32
3g21_A	77	GAG polyprotein, capsid protein; alpha-helical bun	87.05
3vla_A	413	EDGP; extracellular, inhibitor, plant protein; HET	85.73
2qp8_A	395	Beta-secretase 1; BACE1, protease, alternative spl	85.71
1bxo_A	323	Protein (penicillopepsin); hydrolase, phosphonate	85.39
1wkr_A	340	Polyporopepsin; hydrolase, hydrolase-hydrolase inh	85.34
1ibq_A	325	Aspergillopepsin; aspartic proteinase, hydrolase;	84.54
3cms_A	323	Chymosin B; hydrolase, acid proteinase; 2.00A {Bos	84.42
1izd_A	323	Aspartic proteinase; sugar binding, acid protease,	84.22
1miq_A	375	Plasmepsin; aspartic proteinase zymogen, domain op	82.39
1baj_A	101	GAG polyprotein; capsid, HIV-1 assembly protein, v	82.27
3k1w_A	341	Renin; protease, alternative splicing, aspartyl pr	81.81
4aa9_A	320	Chymosin; hydrolase, aspartic peptidase, rennet; H	81.74
3psg_A	370	Pepsinogen; hydrolase(acid proteinase zymogen); 1.	81.19
3c9x_A	329	Trichoderma reesei aspartic protease; aspartic pro	81.09
1oew_A	329	Endothiapepsin; hydrolase, aspartic proteinase mec	80.75
1yg9_A	330	Aspartic protease BLA G 2; allegren, hydrolase, al	80.1

>3s8i_A Protein DDI1 homolog 1; protease, structural genomics, structural genomics consortiu retropepsin-like domain, protein turnover, hydrolase; 1.70A {Homo sapiens}

Probab=99.86  E-value=2.6e-21  Score=150.41  Aligned_cols=107  Identities=19%  Similarity=0.246  Sum_probs=89.3

Q ss_pred             EEEEEEcCEeEEEEEcCCCCccccCHHHHHHcCcceeccc--ceEEEEecCceEeecceeeeEEEEEeceeEEEeEEEec
Q 036248          190 QLSAKINNKPLSVLIDTGSTHNYLHPRLAHFLHLAIEKTM--SFLVAVGNGERIRSEGHCSKVKFEMQGVGFEADFHILD  267 (301)
Q Consensus       190 ~i~~~v~~~~v~~liDsGAs~~~i~~~~~~~~~~~~~~~~--~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  267 (301)
                      ++.+.|||+++++||||||++++|+.++|+++|+......  ...+..+ |. ..+.+.+..+.+.+++..+..+|.|++
T Consensus        26 ~v~~~Ing~~v~~LVDTGAs~s~Is~~~A~rlGL~~~~~~~~~~~a~g~-G~-~~~~g~v~~~~I~Ig~~~~~~~~~Vle  103 (148)
T 3s8i_A           26 YINCKVNGHPLKAFVDSGAQMTIMSQACAERCNIMRLVDRRWAGVAKGV-GT-QRIIGRVHLAQIQIEGDFLQCSFSILE  103 (148)
T ss_dssp             EEEEEETTEEEEEEECTTCSSCEEEHHHHHHTTCGGGEEGGGCEECCC-----CEEEEEEEEEEEEETTEEEEEEEEEET
T ss_pred             EEEEEECCEEEEEEEeCCCCcEeeCHHHHHHcCCccccCcceeEEEEcC-Cc-cEEEEEEEEEEEEECCEEEEEEEEEeC
Confidence            8899999999999999999999999999999999764222  2222222 32 345566777899999999999999999


Q ss_pred             CCCCcEEecHHHHhhcCCeEeeccceEEEEEe
Q 036248          268 FSRADAVLGVQWLEKLGKIITDHKALTMEFTY  299 (301)
Q Consensus       268 ~~~~d~ILG~dwL~~~~~i~id~~~~~~~~~~  299 (301)
                      ..++|+|||+|||.+++. .|||.+++|+|..
T Consensus       104 ~~~~d~LLGmD~L~~~~~-~ID~~~~~L~l~~  134 (148)
T 3s8i_A          104 DQPMDMLLGLDMLRRHQC-SIDLKKNVLVIGT  134 (148)
T ss_dssp             TCSSSEEECHHHHHHTTC-EEETTTTEEECTT
T ss_pred             CCCcCeeccHHHHHhCCE-EEEcCCCEEEEcc
Confidence            889999999999999996 8999999998864

>2i1a_A DNA damage-inducible protein DDI1; acid protease fold, dimer, retroviral protease domain, protein turnover; HET: DNA; 2.30A {Saccharomyces cerevisiae}

Probab=99.77  E-value=4.1e-18  Score=133.38  Aligned_cols=105  Identities=20%  Similarity=0.318  Sum_probs=83.1

Q ss_pred             EEEEEEcCEeEEEEEcCCCCccccCHHHHHHcCcceecccceE--EEEecCceEeecceeeeEEEEEeceeEEEeEEEec
Q 036248          190 QLSAKINNKPLSVLIDTGSTHNYLHPRLAHFLHLAIEKTMSFL--VAVGNGERIRSEGHCSKVKFEMQGVGFEADFHILD  267 (301)
Q Consensus       190 ~i~~~v~~~~v~~liDsGAs~~~i~~~~~~~~~~~~~~~~~~~--v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  267 (301)
                      .+.+.|||+++.+||||||++++|+.++++++++.......+.  +...+|..  ..+.+...++.+++..+..+|.|++
T Consensus        28 ~v~v~InG~~~~~LvDTGAs~s~is~~~a~~lgl~~~~~~~~~~~a~g~g~~~--~~~~~~~~~i~ig~~~~~~~~~vl~  105 (148)
T 2i1a_A           28 YINIEINNYPVKAFVDTGAQTTIMSTRLAKKTGLSRMIDKRFIGEARGVGTGK--IIGRIHQAQVKIETQYIPCSFTVLD  105 (148)
T ss_dssp             EEEEEETTEEEEEEECTTCSSCEEEHHHHHHHTGGGGCBCCCC-------------CEEEEEEEEEETTEEEEEEEEEEC
T ss_pred             EEEEEECCEEEEEEEECCCCccccCHHHHHHcCCCccCCcceEEEEecCCCcc--cccEEEEEEEEECCEEeceeEEEec
Confidence            8889999999999999999999999999999999754332332  23333332  2344455688999999999999999


Q ss_pred             CCCCcEEecHHHHhhcCCeEeeccceEEEEE
Q 036248          268 FSRADAVLGVQWLEKLGKIITDHKALTMEFT  298 (301)
Q Consensus       268 ~~~~d~ILG~dwL~~~~~i~id~~~~~~~~~  298 (301)
                       .++|+|||+|||.+++. .|||.+++|+|.
T Consensus       106 -~~~d~iLG~d~L~~~~~-~ID~~~~~l~l~  134 (148)
T 2i1a_A          106 -TDIDVLIGLDMLKRHLA-CVDLKENVLRIA  134 (148)
T ss_dssp             -SSCSEEECHHHHHHTTC-EEETTTTEEEET
T ss_pred             -CCCCeEecHHHHhhCCE-EEECCCCEEEEc
Confidence             67999999999999996 899999999884

>1fmb_A EIAV protease; hydrolase (acid proteinase), RNA-directed DNA polymerase, AS protease, endonuclease, polyprotein; HET: HYB; 1.80A {Equine infectious anemia virus} SCOP: b.50.1.1 PDB: 2fmb_A*

Probab=99.14  E-value=6.6e-10  Score=80.09  Aligned_cols=95  Identities=22%  Similarity=0.262  Sum_probs=75.8

Q ss_pred             EEEEEEcCEeEEEEEcCCCCccccCHHHHHHcCcceecccceEEEEecCceEeecceeeeEEEEEeceeEEEeEEEecCC
Q 036248          190 QLSAKINNKPLSVLIDTGSTHNYLHPRLAHFLHLAIEKTMSFLVAVGNGERIRSEGHCSKVKFEMQGVGFEADFHILDFS  269 (301)
Q Consensus       190 ~i~~~v~~~~v~~liDsGAs~~~i~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  269 (301)
                      .+.++|+|+++.+|+||||..++++.+.+.+++++-.+.++..+... |+.+.+.  ...+.+.+.++.....++|-+. 
T Consensus        10 ~v~v~I~Gq~~e~LLDTGAD~TVl~~~~w~~i~lp~~~w~p~~i~Gi-GG~i~v~--~~~i~i~i~g~~~~gtvlv~~t-   85 (104)
T 1fmb_A           10 TTIVLINDTPLNVLLDTGADTSVLTTAHYNRLKYRGRKYQGTGIGGV-GGNVETF--STPVTIKKKGRHIKTRMLVADI-   85 (104)
T ss_dssp             EEEEEETTEEEEEEECTTCSSCEEEHHHHHHCSSCCCCEECCCEEET-TEEECCE--EEEEEEEETTEEEEEEEEEESC-
T ss_pred             EEEEEECCEEEEEEeccCCCcEEEccccCcccCCCCccCCccEEEeC-CCeEEee--EeeeEEEECCeEEEEEEEECCC-
Confidence            77899999999999999999999999999999988652234444444 6656665  4679999999998888888553 


Q ss_pred             CCcEEecHHHHhhcCCeEeec
Q 036248          270 RADAVLGVQWLEKLGKIITDH  290 (301)
Q Consensus       270 ~~d~ILG~dwL~~~~~i~id~  290 (301)
                       ..-|||+|+|.+.+. .+||
T Consensus        86 -p~niiGRd~L~qlg~-tLnf  104 (104)
T 1fmb_A           86 -PVTILGRDILQDLGA-KLVL  104 (104)
T ss_dssp             -SSCEECHHHHHHTTC-CCCC
T ss_pred             -CCCEecHhHHhhcCc-EEeC
Confidence             245899999999995 7775

>3slz_A GAG-Pro-POL polyprotein; beta sheet and dimer, protease, peptide inhibitor, TL-3 PEPS virus, hydrolase-hydrolase inhibitor complex; HET: 3TL; 1.40A {Dg-75 murine leukemia virus} PDB: 3nr6_A* 3sm1_A* 3sm2_A* 4exh_A*

Probab=99.09  E-value=6.9e-10  Score=83.22  Aligned_cols=92  Identities=20%  Similarity=0.269  Sum_probs=70.8

Q ss_pred             EEEEEEcCEeEEEEEcCCCCccccCHHHHHHcCcceecccceEEEEecCceEeecceeeeEEEEEeceeEEEeEEEecCC
Q 036248          190 QLSAKINNKPLSVLIDTGSTHNYLHPRLAHFLHLAIEKTMSFLVAVGNGERIRSEGHCSKVKFEMQGVGFEADFHILDFS  269 (301)
Q Consensus       190 ~i~~~v~~~~v~~liDsGAs~~~i~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  269 (301)
                      .+.++|||+++.+|+||||+.++++..-+.     .. ..+..+..++|... .. ....+.+.+++......++|++..
T Consensus        24 ~v~i~I~G~~~~~LlDTGAd~tVl~~~~~p-----~~-~~p~~I~GiGG~i~-vr-~~~~i~IeI~g~~~~~~~lV~~~t   95 (132)
T 3slz_A           24 RITLKVGGQPVTFLVDTGAQHSVLTQNPGP-----LS-DKSAWVQGATGGKR-YR-WTTDRKVHLATGKVTHSFLHVPDC   95 (132)
T ss_dssp             EEEEEETTEEEEEEECTTCSSCEECSCCCS-----EE-EEEEEEECSSCEEE-EE-EECCEEEEETTEEEEECCEECTTS
T ss_pred             EEEEEECCEEEEEEEeCCCCeEEEccccCC-----CC-CCceEEEccCCEEE-EE-EEeeeEEEECCeeecceEEEECCC
Confidence            888999999999999999999999976333     22 24678888888754 32 223467888898888788765433


Q ss_pred             CCcEEecHHHHhhcCCeEeecc
Q 036248          270 RADAVLGVQWLEKLGKIITDHK  291 (301)
Q Consensus       270 ~~d~ILG~dwL~~~~~i~id~~  291 (301)
                      + .-|||+|||.+++. .+|+-
T Consensus        96 P-vnLLGrd~Ltqlg~-tL~fp  115 (132)
T 3slz_A           96 P-YPLLGRDLLTKLKA-QIHFE  115 (132)
T ss_dssp             S-SCEECHHHHHHHTC-EEEEE
T ss_pred             C-ccEECHhhHhhCCc-EEECC
Confidence            3 47899999999996 89996

>3ec0_A Protease; HIV-2, inhibitor, hydrolase; HET: GRL; 1.18A {Human immunodeficiency virus type 2} SCOP: b.50.1.1 PDB: 1hii_A* 1hsi_A 1hsh_A* 1idb_A* 1jld_A* 2mip_A 1ida_A* 3ebz_A* 3ecg_A* 3s45_A* 4upj_A* 1ivq_A* 1ivp_A 2hpf_A 3upj_A* 2hpe_A* 5upj_A* 6upj_A* 1sip_A 1tcw_A* ...

Probab=98.89  E-value=3.3e-08  Score=69.94  Aligned_cols=90  Identities=22%  Similarity=0.303  Sum_probs=67.1

Q ss_pred             EEEEEEcCEeEEEEEcCCCCccccCHHHHHHcCcceecccceEEEEecCceEeecceeeeEEEEEeceeEEEeEEEecCC
Q 036248          190 QLSAKINNKPLSVLIDTGSTHNYLHPRLAHFLHLAIEKTMSFLVAVGNGERIRSEGHCSKVKFEMQGVGFEADFHILDFS  269 (301)
Q Consensus       190 ~i~~~v~~~~v~~liDsGAs~~~i~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  269 (301)
                      .+.++|+|+.+.+|+||||..++++.     ..++-.. ++. +..+-|+.+.+... ..+.+.+.|+.....++|-+ .
T Consensus        10 ~vti~I~Gq~~e~LLDTGAD~TVl~~-----~~~Pg~w-~pk-~igGiGG~i~v~qy-~~i~iei~g~~~~gtvlV~~-t   80 (99)
T 3ec0_A           10 VVTAYIEGQPVEVLLDTGADDSIVAG-----IELGNNY-SPK-IVGGIGGFINTKEY-KNVEIEVLNKKVRATIMTGD-T   80 (99)
T ss_dssp             EEEEEETTEEEEEEECTTCSSCEESS-----CCCCSCC-EEE-EEEETTEEEEEEEE-EEEEEEETTEEEEEEEEEEC-C
T ss_pred             eEEEEECCEEEEEEEecCCCceEEcC-----cccCCCC-Cce-EEEecCCcEeeeEE-eeEEEEECCeEEEEEEEeCC-C
Confidence            67889999999999999999999963     3444321 223 45556776766553 57889999998777777744 3


Q ss_pred             CCcEEecHHHHhhcCCeEeec
Q 036248          270 RADAVLGVQWLEKLGKIITDH  290 (301)
Q Consensus       270 ~~d~ILG~dwL~~~~~i~id~  290 (301)
                      +. =|||+|+|.+.+. .++|
T Consensus        81 Pv-niiGRnlLtqlG~-tLnf   99 (99)
T 3ec0_A           81 PI-NIFGRNILTALGM-SLNL   99 (99)
T ss_dssp             SS-CEECHHHHHHHTC-EEEC
T ss_pred             Cc-CeeehhhHhhcCc-EEeC
Confidence            33 4699999999995 8876

>2hs1_A HIV-1 protease; ultra-high resolution active site surface binding site, HYDR; HET: 017; 0.84A {Human immunodeficiency virus 1} PDB: 3nu4_A* 3tl9_A* 3tkw_A* 3tkg_A* 3ndu_A* 3ndt_A* 3k4v_A* 3a2o_A* 1fgc_C* 2a1e_A* 2aod_A* 2aoi_A* 2aoj_A* 2hb3_A* 2ien_A* 1sdt_A* 2z4o_A* 2zye_A* 2nmw_A* 3b7v_A* ...

Probab=98.86  E-value=5.3e-08  Score=69.11  Aligned_cols=90  Identities=17%  Similarity=0.226  Sum_probs=67.3

Q ss_pred             EEEEEEcCEeEEEEEcCCCCccccCHHHHHHcCcceecccceEEEEecCceEeecceeeeEEEEEeceeEEEeEEEecCC
Q 036248          190 QLSAKINNKPLSVLIDTGSTHNYLHPRLAHFLHLAIEKTMSFLVAVGNGERIRSEGHCSKVKFEMQGVGFEADFHILDFS  269 (301)
Q Consensus       190 ~i~~~v~~~~v~~liDsGAs~~~i~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  269 (301)
                      .+.++|+|+.+.+|+||||..++++..     .++-.. .|. ...+-|+.+++.. ...+.+.+.++.....++|-+ .
T Consensus        10 ~vtvkI~Gq~~eaLLDTGAD~TVl~~~-----~~p~~w-kpk-~igGiGG~i~v~q-y~qi~iei~g~~~~gtvlV~~-t   80 (99)
T 2hs1_A           10 LVTIKIGGQLKEALLDTGADDTIIEEM-----SLPGRW-KPK-MIGGIGGFIKVRQ-YDQIIIEIAGHKAIGTVLVGP-T   80 (99)
T ss_dssp             EEEEEETTEEEEEEECTTCSSEEESCC-----SSCCCC-EEE-EEEETTEEEEEEE-EEEEEEEETTEEEEEEEEESC-C
T ss_pred             EEEEEECCEEEEEEeccCCCcEEEecc-----cCCCCC-CCc-EEEeCCCcEeeeE-eccEEEEEeCCEEEEEEEeCC-C
Confidence            778899999999999999999999853     444321 233 3444466666653 357899999999888888844 3


Q ss_pred             CCcEEecHHHHhhcCCeEeec
Q 036248          270 RADAVLGVQWLEKLGKIITDH  290 (301)
Q Consensus       270 ~~d~ILG~dwL~~~~~i~id~  290 (301)
                      .. =|||+|+|.+.+. .+||
T Consensus        81 Pv-niiGRd~Ltqlg~-tLnf   99 (99)
T 2hs1_A           81 PV-NIIGRNLLTQIGA-TLNF   99 (99)
T ss_dssp             SS-CEECHHHHTTTTC-EEEC
T ss_pred             cc-CchhHhHHHHcCC-EEeC
Confidence            34 3799999999995 7775

>2hah_A Protease, retropepsin; retroviral, aspartyl, hydrolase-hydrolase complex; HET: 3TL; 1.70A {Feline immunodeficiency virus} PDB: 3ogp_A* 3ogq_A* 2fiv_A* 6fiv_A* 3fiv_A* 5fiv_A* 4fiv_A* 1fiv_A* 1b11_A*

Probab=98.57  E-value=4.7e-07  Score=66.20  Aligned_cols=94  Identities=21%  Similarity=0.213  Sum_probs=64.4

Q ss_pred             EEEEEEcCEeEEEEEcCCCCccccCHHHHHHcCcceecccceEEEEecCceEeecceeeeEEEEEecee-----EEEeEE
Q 036248          190 QLSAKINNKPLSVLIDTGSTHNYLHPRLAHFLHLAIEKTMSFLVAVGNGERIRSEGHCSKVKFEMQGVG-----FEADFH  264 (301)
Q Consensus       190 ~i~~~v~~~~v~~liDsGAs~~~i~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~-----~~~~~~  264 (301)
                      .+ ++|+|+.+.+|+||||..++|+..-+...  +-.. .+.....+-|+.+++. ....+.+.+.++.     ....++
T Consensus        16 ~v-ikI~Gq~~eaLLDTGAD~TVi~~~~~~~~--p~~w-kpk~~igGiGG~i~v~-qy~qv~iei~g~~~~~~~~~gtvl   90 (116)
T 2hah_A           16 IL-IFVNGYPIKFLLDTGADITVLNRRDFQVK--NSIE-NGRQMIGGIGGFIRGT-NYINVHLEIRDENYKTQCIFGNVC   90 (116)
T ss_dssp             EE-EEETTEEEEEEECTTCSSCEEEGGGCCCT--TCEE-EEEEEEEETTEEEEEE-EEEEEEEEECCTTSCCEEEEEEEE
T ss_pred             EE-EEECCEEEEEEecCCCCcEEEcccccccC--CCCC-CCceEEecCCCceeee-EEccEEEEEeCCCCCcceeEEEEE
Confidence            66 99999999999999999999996432111  2222 2222144446656554 3356888898887     777888


Q ss_pred             Eec-CCCCcEEecHHHHhhcCCeEee
Q 036248          265 ILD-FSRADAVLGVQWLEKLGKIITD  289 (301)
Q Consensus       265 v~~-~~~~d~ILG~dwL~~~~~i~id  289 (301)
                      |.+ ...--=|||+|+|.+.+. .+.
T Consensus        91 V~p~tP~~vniiGRd~Ltqlg~-tL~  115 (116)
T 2hah_A           91 VLEDNSTPVNILGRDNMIKFNI-RLV  115 (116)
T ss_dssp             EETTCCCSSEEECHHHHTTTTC-CCC
T ss_pred             ECCCCCccccEecHHHHhHcCC-EEe
Confidence            888 431125899999999985 543

>3ka2_A [L-Ala51;Gly51']HIV-1 protease; beta-barrel, hydrolase-hydrolase inhibitor complex; HET: YCM 2NC; 1.40A {Synthetic} PDB: 3fsm_A* 3gi0_A* 2o40_A* 3hzc_A* 3hlo_A* 3iaw_A* 3nxe_A* 3nxn_A* 4epj_A 4ep2_A 4ep3_A 4eq0_A 4eqj_A 1hvc_A* 1g6l_A 2whh_A* 1lv1_A* 3dox_A 3kt5_A 3kt2_A ...

Probab=98.48  E-value=2e-06  Score=68.99  Aligned_cols=91  Identities=16%  Similarity=0.249  Sum_probs=67.8

Q ss_pred             EEEEEEcCEeEEEEEcCCCCccccCHHHHHHcCcceecccceEEEEecCceEeecceeeeEEEEEeceeEEEeEEEecCC
Q 036248          190 QLSAKINNKPLSVLIDTGSTHNYLHPRLAHFLHLAIEKTMSFLVAVGNGERIRSEGHCSKVKFEMQGVGFEADFHILDFS  269 (301)
Q Consensus       190 ~i~~~v~~~~v~~liDsGAs~~~i~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  269 (301)
                      .+.++|+|+++.+|+||||..+++..     .+++-. ..|..+ .+-|+.+.+... ..+.+.+.|+.....++|-+ .
T Consensus        10 ~vtv~I~Gq~~e~LLDTGAD~TVl~~-----~~lpg~-w~pk~i-gGIGG~i~vrqy-~~i~iei~g~~~~gtvlVg~-t   80 (203)
T 3ka2_A           10 LVTIRIGGQLKEALLDTGADDTVIEE-----LNLPGX-WKPKLI-GGIAGFIKVRQY-DQIPVEIXGHKAIGTVLVGP-T   80 (203)
T ss_dssp             EEEEEETTEEEEEEECTTCSSCEECS-----CCCSSC-EEEEEE-EETTEEEEEEEE-EEEEEEETTEEEEEEEEESC-C
T ss_pred             eEEEEECCEEEEEEEecCCCceEEec-----ccCCCC-CCceEE-EEccCcEEEEEE-cceeEEEcCeEEEEEEeeCC-C
Confidence            67889999999999999999999983     455432 123333 444665655433 46888999999887777754 3


Q ss_pred             CCcEEecHHHHhhcCCeEeecc
Q 036248          270 RADAVLGVQWLEKLGKIITDHK  291 (301)
Q Consensus       270 ~~d~ILG~dwL~~~~~i~id~~  291 (301)
                      ..+ |||+|.|.+.+. .+||.
T Consensus        81 Pvn-IiGRd~LtqlG~-tLnf~  100 (203)
T 3ka2_A           81 PVN-IIGRNLLTQIGX-TLNFX  100 (203)
T ss_dssp             SSC-EECHHHHTTTTC-EEEGG
T ss_pred             CcC-ccchhhhhhcCc-eEEec
Confidence            444 899999999995 89986

>3sqf_A Protease; folded monomer, retropepsin, D-type retrovirus; 1.63A {Mason-pfizer monkey virus} SCOP: b.50.1.1 PDB: 1nso_A

Probab=98.00  E-value=1.2e-05  Score=58.21  Aligned_cols=97  Identities=12%  Similarity=0.078  Sum_probs=56.1

Q ss_pred             EEEEEEcCEeEEEEEcCCCCccccCHHHHHHcCccee--cc-cceEEEEecCceEeecceeeeEE-EE-EeceeEEEeEE
Q 036248          190 QLSAKINNKPLSVLIDTGSTHNYLHPRLAHFLHLAIE--KT-MSFLVAVGNGERIRSEGHCSKVK-FE-MQGVGFEADFH  264 (301)
Q Consensus       190 ~i~~~v~~~~v~~liDsGAs~~~i~~~~~~~~~~~~~--~~-~~~~v~~~~g~~~~~~~~~~~~~-~~-~~~~~~~~~~~  264 (301)
                      .+.++|+|+.+.+|+||||..++|+..     .++-.  +. ....+... |+.+.+... ..+. .. +.|+......+
T Consensus        11 ~vti~I~Gq~~eaLLDTGADdTVi~~~-----~lpg~W~p~~~~k~igGI-GG~i~v~qy-~~~~~~~~i~g~k~i~tvl   83 (114)
T 3sqf_A           11 SLTLWLDDKMFTGLINTGADVTIIKLE-----DWPPNWPITDTLTNLRGI-GQSNNPKQS-SKYLTWRDKENNSGLIKPF   83 (114)
T ss_dssp             EEEEEETTEEEEEEECTTCSSCEEEGG-----GSCTTSCEEECCCCCTTC-CGGGCCEEE-SSCEEEECTTCCEEEECCE
T ss_pred             eEEEEECCEEEEEEEccCCCceEEecc-----cCCCCcccCcCceEEEec-cceEEEEEe-ccceEEEecCCCEEEEEEE
Confidence            778999999999999999999999853     33322  10 01222222 443433322 2222 22 57887777777


Q ss_pred             EecCCCCcEEecHHHHhhcCCeEeeccceEE
Q 036248          265 ILDFSRADAVLGVQWLEKLGKIITDHKALTM  295 (301)
Q Consensus       265 v~~~~~~d~ILG~dwL~~~~~i~id~~~~~~  295 (301)
                      |.+..+.+ |+|+|.|.+.+. .++|-+..+
T Consensus        84 V~~ptPvN-IiGRn~LtqlG~-tLnfp~~~~  112 (114)
T 3sqf_A           84 VIPNLPVN-LWGRDLLSQMKI-MMASPNDIV  112 (114)
T ss_dssp             EETTCSSC-EECHHHHTTSCC----------
T ss_pred             ECCCCccc-EEchhhHhhcCc-EEECCCccc
Confidence            76434454 489999999995 888876554

>3ka2_A [L-Ala51;Gly51']HIV-1 protease; beta-barrel, hydrolase-hydrolase inhibitor complex; HET: YCM 2NC; 1.40A {Synthetic} PDB: 3fsm_A* 3gi0_A* 2o40_A* 3hzc_A* 3hlo_A* 3iaw_A* 3nxe_A* 3nxn_A* 4epj_A 4ep2_A 4ep3_A 4eq0_A 4eqj_A 1hvc_A* 1g6l_A 2whh_A* 1lv1_A* 3dox_A 3kt5_A 3kt2_A ...

Probab=97.97  E-value=0.00012  Score=58.71  Aligned_cols=90  Identities=18%  Similarity=0.242  Sum_probs=65.4

Q ss_pred             EEEEEEcCEeEEEEEcCCCCccccCHHHHHHcCcceecccceEEEEecCceEeecceeeeEEEEEeceeEEEeEEEecCC
Q 036248          190 QLSAKINNKPLSVLIDTGSTHNYLHPRLAHFLHLAIEKTMSFLVAVGNGERIRSEGHCSKVKFEMQGVGFEADFHILDFS  269 (301)
Q Consensus       190 ~i~~~v~~~~v~~liDsGAs~~~i~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  269 (301)
                      .+..+|+|+.+.+|+||||..+++.     ...++-. .+|..+ .+-|+.+++..- ..+.+.+.|+.....++|-+. 
T Consensus       114 ~~~iki~Gq~~e~LlDTGAD~TVl~-----~~~lpg~-w~pk~i-gGiGg~i~v~qy-~~i~iei~g~~~~~tvlVgpt-  184 (203)
T 3ka2_A          114 LVTIRIGGQLKEALLDTGADDTVIE-----ELNLPGX-WKPKLI-GGIGGFIKVRQY-DQIPVEIXGHKAIGTVLVGPT-  184 (203)
T ss_dssp             EEEEEETTEEEEEEECTTCSSCEEC-----SCCCCSC-CEEEEE-EETTEEEEEEEE-EEEEEEETTEEEEEEEEESCC-
T ss_pred             cEEEEECCEEEeeeecccCCceeee-----cccCCCC-CCceEE-eeccceEEEEEe-ccEEEEECCeEEEEEEEECCC-
Confidence            6778999999999999999999995     3344422 123333 444665555433 468889999988888877663 


Q ss_pred             CCcEEecHHHHhhcCCeEeec
Q 036248          270 RADAVLGVQWLEKLGKIITDH  290 (301)
Q Consensus       270 ~~d~ILG~dwL~~~~~i~id~  290 (301)
                      ++ =|+|+|.|.+.+. .++|
T Consensus       185 Pv-niiGRn~LtqlG~-tl~f  203 (203)
T 3ka2_A          185 PV-NIIGRNLLTQIGX-TLNF  203 (203)
T ss_dssp             SS-CEECHHHHGGGTC-EEEC
T ss_pred             Cc-CeechhhHHHhCC-eeeC
Confidence            33 3689999999995 7775

>2rsp_A RSV protease; hydrolase(aspartyl proteinase); 2.00A {Rous sarcoma virus} SCOP: b.50.1.1 PDB: 1mvp_A 1bai_A*

Probab=97.84  E-value=2.2e-05  Score=57.91  Aligned_cols=85  Identities=13%  Similarity=0.177  Sum_probs=49.7

Q ss_pred             EcCEeEEEEEcCCCCccccCHHHHHHcCcceec----ccceEEEEecCceEeecceeeeEEEEEece--eEEEeEEEecC
Q 036248          195 INNKPLSVLIDTGSTHNYLHPRLAHFLHLAIEK----TMSFLVAVGNGERIRSEGHCSKVKFEMQGV--GFEADFHILDF  268 (301)
Q Consensus       195 v~~~~v~~liDsGAs~~~i~~~~~~~~~~~~~~----~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~--~~~~~~~v~~~  268 (301)
                      |+|+.+.+|+||||..+++...     .++-..    .....+...+|. ++.......+.+.+.++  .....+.|.|.
T Consensus        27 i~gq~~eaLLDTGAD~TVl~~~-----~lP~~W~k~~~~~~~igGIGG~-i~v~qy~~~i~iei~g~~g~~~~tvlV~P~  100 (124)
T 2rsp_A           27 QRSVYITALLDSGADITIISEE-----DWPTDWPVMEAANPQIHGIGGG-IPMRKSRDMIELGVINRDGSLERPLLLFPA  100 (124)
T ss_dssp             CSEEEEEEEECTTCSSCEEETT-----TSCTTSCEEECC---------C-CCEEEESSCEEEEEECTTSCBCCCEEECCE
T ss_pred             CCCEEEEEEecCCCCcEEEecc-----cCCCcceeeccccceeeecCce-EeeEEeCCceEEEEeCCCCcEEEEEEECcC
Confidence            8999999999999999999853     333221    111235555443 33332211567777666  44556666663


Q ss_pred             C--CCcEEecHHHHhhcCC
Q 036248          269 S--RADAVLGVQWLEKLGK  285 (301)
Q Consensus       269 ~--~~d~ILG~dwL~~~~~  285 (301)
                      .  .--=|+|+|.|.+.+.
T Consensus       101 ~~~tPvnIiGRdlLtqlG~  119 (124)
T 2rsp_A          101 VAMVRGSILGRDCLQGLGL  119 (124)
T ss_dssp             EESCSSEEECHHHHHHTTC
T ss_pred             CCCCceeEECHhHHhhCCc
Confidence            1  1124899999999995

>2pma_A Uncharacterized protein; APC86035.2, protein LPG0085, DUF785, legionella pneumophila pneumophila STR. philadelphia 1; 1.89A {Legionella pneumophila subsp} SCOP: b.50.1.3

Probab=97.77  E-value=3.9e-05  Score=58.31  Aligned_cols=94  Identities=15%  Similarity=0.114  Sum_probs=60.8

Q ss_pred             CEeEEEEEcCCCCccccCHHHHHHcC---cc--------------ee-c-ccceEEEEecCce--------Eeecceeee
Q 036248          197 NKPLSVLIDTGSTHNYLHPRLAHFLH---LA--------------IE-K-TMSFLVAVGNGER--------IRSEGHCSK  249 (301)
Q Consensus       197 ~~~v~~liDsGAs~~~i~~~~~~~~~---~~--------------~~-~-~~~~~v~~~~g~~--------~~~~~~~~~  249 (301)
                      |.++.|=|||||..+-|+..-++.+.   -+              .. + .....|+..+|..        ...... ..
T Consensus        17 g~~~~AKiDTGA~TSSLhA~dI~~Ferdg~~wVrF~~~~~~~~~~~e~pv~~~~~Ik~s~g~~~~~~~~~~~e~R~V-V~   95 (146)
T 2pma_A           17 NLTLSAKLDTGAKSASLHAVNITEIEKKGIPYLRFTVPTKTGDYSFEGEYVGKVKIKVRSSETNPGLLRTTPIKRPV-VL   95 (146)
T ss_dssp             TEEEEEEECTTCSSEEEECEEEEEEEETTEEEEEEEEEETTEEEEEEEEEEEEEEC---------------CCEEEE-EE
T ss_pred             CCEEEEEecCCcCcceecceeEEEeeeCCCcEEEEEEecCCCCceEEEEeEEEEEEecCCCccccccccCCcccccE-EE
Confidence            56789999999999988877554321   00              00 1 1223344444441        122222 36


Q ss_pred             EEEEEeceeEEEeEEEecCC--CCcEEecHHHHhhcCCeEeeccc
Q 036248          250 VKFEMQGVGFEADFHILDFS--RADAVLGVQWLEKLGKIITDHKA  292 (301)
Q Consensus       250 ~~~~~~~~~~~~~~~v~~~~--~~d~ILG~dwL~~~~~i~id~~~  292 (301)
                      +.+.+++....++|...+-+  .|+|+||+.||...+. .||=..
T Consensus        96 ~~i~lG~~~~~ie~tLtdRs~m~ypmLLGR~~L~~~~~-lVD~s~  139 (146)
T 2pma_A           96 LNIKLGDKVRTIKVNLTNRKRFLYPLLLGRDAIIDFNG-AVDPAL  139 (146)
T ss_dssp             EEEEETTEEEEEEEEEECCCCCSCSEEECHHHHHHTTE-EEETTC
T ss_pred             EEEEECCEEEEEEEEEcCCCcCCCCEEechhHHhhCCE-EECCch
Confidence            78899999999999999965  5999999999998884 788543

>3lhr_A Zinc finger protein 24; SCAN domain, protein structure initiative, center for eukary structural genomics, PSI-2, CESG, nucleus, phosphoprotein; 1.90A {Homo sapiens} SCOP: a.28.3.0

Probab=97.42  E-value=0.0011  Score=46.23  Aligned_cols=75  Identities=16%  Similarity=0.231  Sum_probs=62.8

Q ss_pred             hhHHHHHhcCcc--cccHHHHHHHHHHHHHHhh--c------CCHHHHHHHHHhcCCHHHHHhcccCCCCcHHHHHHHHH
Q 036248           33 INHRATLFKLTQ--TSSVEAYQSTFENICNRVT--N------LHPDAILDCFISGLKPTIQNELAIHKPSNLRDAIALAK  102 (301)
Q Consensus        33 ~~~~~~l~~lkQ--~~sv~~Y~~~f~~L~~~~~--~------~~e~~~~~~f~~GL~~~i~~~l~~~~p~tl~~~~~~A~  102 (301)
                      +..+.+|+...-  ..+..+.+.++++|++++-  +      +-|...+.+|+.-|+.+++.+|..+.|.+-++|+.++.
T Consensus         6 E~~rq~FR~f~y~e~~gp~eal~~L~eLc~~WLrPe~htKEQileLLVLEQFL~ilP~e~q~wv~~~~p~s~~eav~l~E   85 (93)
T 3lhr_A            6 EIFRQRFRQFGYQDSPGPREAVSQLRELCRLWLRPETHTKEQILELVVLEQFVAILPKELQTWVRDHHPENGEEAVTVLE   85 (93)
T ss_dssp             HHHHHHHHHCCGGGSSSHHHHHHHHHHHHHHHHCTTTSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTCCSSHHHHHHHHH
T ss_pred             HHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHhCCHHHHHHHHHhCCCCHHHHHHHHH
Confidence            346778888764  7789999999999999993  2      24456789999999999999999999999999999988


Q ss_pred             HHHHH
Q 036248          103 LIEDK  107 (301)
Q Consensus       103 ~~e~~  107 (301)
                      .+...
T Consensus        86 ~l~~~   90 (93)
T 3lhr_A           86 DLESE   90 (93)
T ss_dssp             HHHHH
T ss_pred             HHHhh
Confidence            76543

>3liy_A Protease; hydrolase, hydrolase-hydrolase inhibitor complex; HET: STA; 1.86A {Human t-lymphotropic virus 1} PDB: 2b7f_A* 3liq_A* 3lit_A* 3liv_A* 3lix_A* 3lin_A*

Probab=97.39  E-value=0.00086  Score=48.12  Aligned_cols=90  Identities=13%  Similarity=0.135  Sum_probs=56.6

Q ss_pred             EEEEEEc-----CEeEEEEEcCCCCccccCHHHHHHcCcceec-ccceEEEEecCceEeecceeeeEEEEEec----eeE
Q 036248          190 QLSAKIN-----NKPLSVLIDTGSTHNYLHPRLAHFLHLAIEK-TMSFLVAVGNGERIRSEGHCSKVKFEMQG----VGF  259 (301)
Q Consensus       190 ~i~~~v~-----~~~v~~liDsGAs~~~i~~~~~~~~~~~~~~-~~~~~v~~~~g~~~~~~~~~~~~~~~~~~----~~~  259 (301)
                      .+.++|+     |+.+.||+||||..+++..-     .++-.. ..+..+..+-|+.... .....+.+.+..    ...
T Consensus        12 lvtikI~~~~~~Gq~~eaLLDTGADdTVl~~~-----~lPg~Wkp~~tkiiGGiGg~~~~-~qs~~~pv~i~lpfr~~pv   85 (116)
T 3liy_A           12 VIKAQVDTQTSHPKTIEALLDTGADMTVIPIA-----LFSSNTPLKNTSVLGAGGQTQDH-FKLTSLPVLIRLPFRTTPI   85 (116)
T ss_dssp             EEEEEEECSSSCCEEEEEEECTTBSSCEEEGG-----GSCTTCCEEECCEEETTEEESSS-EEEESSCEEEECTTCCSCE
T ss_pred             eEEEEEccccCCCeEeEEEeccCCCccEEecc-----cCCCCCcccccceEeecccceee-eEecCCCeEEEeccCCcce
Confidence            6778999     99999999999999999843     333321 1111444444543322 233445555543    344


Q ss_pred             EEeEEEecCCCCcEEecHHHHhhcCC
Q 036248          260 EADFHILDFSRADAVLGVQWLEKLGK  285 (301)
Q Consensus       260 ~~~~~v~~~~~~d~ILG~dwL~~~~~  285 (301)
                      ....+.++..+-=-|||+|-|.+.+.
T Consensus        86 ~l~~~lv~~~~~w~iigRd~l~q~q~  111 (116)
T 3liy_A           86 VLTSCLVDTKNNWAIIGRDALQQCQG  111 (116)
T ss_dssp             EESSCEEETTSCCCEECHHHHHHTTC
T ss_pred             eeceEEEcCCCceeEechhHHhhhcc
Confidence            45555555554446899999999885

>2fi2_A Zinc finger protein 42; SCAN domain, ZNF-42, MZF-1, homodimer, transcription factor, structural genomics, PSI, protein structure initiative; NMR {Homo sapiens} SCOP: a.28.3.2

Probab=97.00  E-value=0.0045  Score=42.72  Aligned_cols=73  Identities=16%  Similarity=0.279  Sum_probs=61.1

Q ss_pred             hhHHHHHhcCcc--cccHHHHHHHHHHHHHHhh--c------CCHHHHHHHHHhcCCHHHHHhcccCCCCcHHHHHHHHH
Q 036248           33 INHRATLFKLTQ--TSSVEAYQSTFENICNRVT--N------LHPDAILDCFISGLKPTIQNELAIHKPSNLRDAIALAK  102 (301)
Q Consensus        33 ~~~~~~l~~lkQ--~~sv~~Y~~~f~~L~~~~~--~------~~e~~~~~~f~~GL~~~i~~~l~~~~p~tl~~~~~~A~  102 (301)
                      +..+.+|+...-  .....+=+.++++||.++-  .      +-|...+.+|+.-|+.+++.+|..+.|.+-++|+.++.
T Consensus         7 E~~rq~FR~f~y~e~~gPreaL~rLreLc~qWLrPe~hTKEQIlElLVLEQFL~iLP~eiq~wV~~~~P~s~eeav~lvE   86 (94)
T 2fi2_A            7 EAARLRFRCFHYEEATGPQEALAQLRELCRQWLRPEVRSKEQMLELLVLEQFLGALPPEIQARVQGQRPGSPEEAAALVD   86 (94)
T ss_dssp             HHHHHHHHSCCCCTTTCHHHHHHHHHHHHHHHHCTTTCCHHHHHHHHHHHHHHHHSCHHHHHHHHHHCCCSHHHHHHHHH
T ss_pred             hHHHHhcccCCCCCCCCHHHHHHHHHHHHHHHCCcccccHHHHHHHHHHHHHHHhCcHHHHHHHHhcCCCcHHHHHHHHH
Confidence            336778888765  6678899999999999993  2      24557789999999999999999999999999999987


Q ss_pred             HHH
Q 036248          103 LIE  105 (301)
Q Consensus       103 ~~e  105 (301)
                      .+.
T Consensus        87 dl~   89 (94)
T 2fi2_A           87 GLR   89 (94)
T ss_dssp             HHT
T ss_pred             HHH
Confidence            654

>4e6s_A Zinc finger and SCAN domain-containing protein 10; protein interaction, other scans, N-terminal PA finger transcription factor, transcription; 1.85A {Mus musculus}

Probab=96.86  E-value=0.0034  Score=43.66  Aligned_cols=71  Identities=13%  Similarity=0.108  Sum_probs=58.7

Q ss_pred             hhHHHHHhcCcc--cccHHHHHHHHHHHHHHhh--c------CCHHHHHHHHHhcCCHHHHHhcccCCCCcHHHHHHHHH
Q 036248           33 INHRATLFKLTQ--TSSVEAYQSTFENICNRVT--N------LHPDAILDCFISGLKPTIQNELAIHKPSNLRDAIALAK  102 (301)
Q Consensus        33 ~~~~~~l~~lkQ--~~sv~~Y~~~f~~L~~~~~--~------~~e~~~~~~f~~GL~~~i~~~l~~~~p~tl~~~~~~A~  102 (301)
                      +..+.+|+...-  ..+..+.+.++++|++++-  .      +-|...+.+|+.-|+.+++.+|..+.|.+-++|+. +.
T Consensus         6 E~~rq~Fr~f~y~e~~gPreal~~L~eLc~~WLrPe~htKEQIleLLVLEQFL~ilP~e~q~wv~~~~p~s~eeav~-~E   84 (93)
T 4e6s_A            6 EVAHQLFRCFQYQEDMGPRASLGRLRELCNHWLRPALHTKKQILELLVLEQFLSVLPPHVLSRLHGAPLRDGEEVAQ-LE   84 (93)
T ss_dssp             HHHHHHHHTCCCCTTTCHHHHHHHHHHHHHHHHCTTTCCHHHHHHHHHHHHHHHTSCHHHHGGGTTCCCSCHHHHHH-TT
T ss_pred             hHHHHHHhccCCCCCCCHHHHHHHHHHHHHHHcCcccCCHHHHHHHHHHHHHHHhCCHHHHHHHHHhCCCcHHHHHH-HH
Confidence            446788888765  7789999999999999993  2      24456789999999999999999999999999988 65


Q ss_pred             HH
Q 036248          103 LI  104 (301)
Q Consensus       103 ~~  104 (301)
                      .+
T Consensus        85 ~l   86 (93)
T 4e6s_A           85 GV   86 (93)
T ss_dssp             C-
T ss_pred             HH
Confidence            43

>1y7q_A AW-1, zinc finger protein 174; SCAN domain, retroviral capsid C-terminal domain, dimer, C2H2 zinc finger associated, transcription; NMR {Homo sapiens} SCOP: a.28.3.2

Probab=96.85  E-value=0.0057  Score=42.56  Aligned_cols=74  Identities=12%  Similarity=0.172  Sum_probs=61.7

Q ss_pred             hhHHHHHhcCcc--cccHHHHHHHHHHHHHHhh--c------CCHHHHHHHHHhcCCHHHHHhcccCCCCcHHHHHHHHH
Q 036248           33 INHRATLFKLTQ--TSSVEAYQSTFENICNRVT--N------LHPDAILDCFISGLKPTIQNELAIHKPSNLRDAIALAK  102 (301)
Q Consensus        33 ~~~~~~l~~lkQ--~~sv~~Y~~~f~~L~~~~~--~------~~e~~~~~~f~~GL~~~i~~~l~~~~p~tl~~~~~~A~  102 (301)
                      +..+.+|+...-  .....+=+.++++||.++-  .      +-|...+.+|+.-|+.+++.+|..+.|.+-++|+.++.
T Consensus         9 E~~rq~FR~f~y~e~~gPreaL~rLreLC~qWLrPe~hTKEQIlElLVLEQFL~iLP~eiq~wV~~~~P~s~eeav~lvE   88 (98)
T 1y7q_A            9 ELCRQSFRRFCYQEVSGPQEALSQLRQLCRQWLQPELHTKEQILELLVMEQFLTILPEEIQARVRHRCLMSSKEIVTLVE   88 (98)
T ss_dssp             THHHHHHHTCCSCSCCSSHHHHHHHHHHHHHHHCCSSCCHHHHHHHHHHHHHHHHSCTHHHHHHHTSCCCCHHHHHHHHH
T ss_pred             HHHHHHhccCCCCCCCCHHHHHHHHHHHHHHHCCcccccHHHHHHHHHHHHHHHhCCHHHHHHHhccCCCcHHHHHHHHH
Confidence            336788888764  6678899999999999993  2      34557789999999999999999999999999999987


Q ss_pred             HHHH
Q 036248          103 LIED  106 (301)
Q Consensus       103 ~~e~  106 (301)
                      .+..
T Consensus        89 dl~~   92 (98)
T 1y7q_A           89 DFHR   92 (98)
T ss_dssp             HHHT
T ss_pred             HHHH
Confidence            7553

>2jys_A Protease/reverse transcriptase; retroviral protease, hydrolase; NMR {Simian foamy virus type 1}

Probab=96.57  E-value=0.026  Score=38.54  Aligned_cols=86  Identities=22%  Similarity=0.277  Sum_probs=62.5

Q ss_pred             EEEEEcCEeEEEEEcCCCCccccCHHHHHHcCcceecccceEEEEecCceEeecceeeeEEEEEeceeEEEeEEEecCCC
Q 036248          191 LSAKINNKPLSVLIDTGSTHNYLHPRLAHFLHLAIEKTMSFLVAVGNGERIRSEGHCSKVKFEMQGVGFEADFHILDFSR  270 (301)
Q Consensus       191 i~~~v~~~~v~~liDsGAs~~~i~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  270 (301)
                      +.+.|.|..+.+.-||||+.+.|...|....    .|.....+.+..|....-   +-=++|.++|.....+++..+. +
T Consensus        10 L~vEiKg~kLkg~WDsGA~ITCiP~~fL~~E----~PI~~~~I~TIHG~k~q~---vYYl~fKv~GRKveaEVi~sp~-d   81 (107)
T 2jys_A           10 LEAEIKGTKLKAHWDSGATITCVPEAFLEDE----RPIQTMLIKTIHGEKQQD---VYYLTFKVQGRKVEAEVLASPY-D   81 (107)
T ss_dssp             EEEEETTEEEEEEECTTCSSEEEEGGGTTTC----CCSEEEEEECSSCEEEEE---EEEEEEEESSCEEEEEEEEESS-S
T ss_pred             eeEEEeCcEEEEEecCCCeEEEcchHHhccc----ccccceEEEEecCceece---EEEEEEEEcCeEEEEEEecCcc-c
Confidence            6688999999999999999999999875432    355677888888875322   2347889999988888776662 2


Q ss_pred             CcEEe--cHHHHhhcC
Q 036248          271 ADAVL--GVQWLEKLG  284 (301)
Q Consensus       271 ~d~IL--G~dwL~~~~  284 (301)
                      |-+|-  -.||+.+..
T Consensus        82 Yvli~P~DiPW~~~~p   97 (107)
T 2jys_A           82 YILLNPSDVPWLMKKP   97 (107)
T ss_dssp             SEEECTTTCHHHHSCC
T ss_pred             EEEEcCcCccccccCc
Confidence            32221  348887655

>1lya_B Cathepsin D; lysosomal aspartic protease; HET: NAG BMA MAN; 2.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 1lyb_B* 1lyw_B*

Probab=94.51  E-value=0.13  Score=42.29  Aligned_cols=93  Identities=18%  Similarity=0.249  Sum_probs=57.0

Q ss_pred             EEEEEcCCCCccccCHHHHHHcCcceecccceEEEEecCce-Eeecc--eeeeEEEEEeceeEEEe--------------
Q 036248          200 LSVLIDTGSTHNYLHPRLAHFLHLAIEKTMSFLVAVGNGER-IRSEG--HCSKVKFEMQGVGFEAD--------------  262 (301)
Q Consensus       200 v~~liDsGAs~~~i~~~~~~~~~~~~~~~~~~~v~~~~g~~-~~~~~--~~~~~~~~~~~~~~~~~--------------  262 (301)
                      ..++||||++..++..+.+..+.-..... .    ..+|.. +.|..  ..+.+.+.++|..+.+.              
T Consensus       121 ~~aiiDSGTt~~~lP~~~~~~l~~~~~~~-~----~~~g~~~~~C~~~~~~p~i~f~f~g~~~~l~~~~y~~~~~~~~~~  195 (241)
T 1lya_B          121 CEAIVDTGTSLMVGPVDEVRELQKAIGAV-P----LIQGEYMIPCEKVSTLPAITLKLGGKGYKLSPEDYTLKVSQAGKT  195 (241)
T ss_dssp             EEEEECTTCSSEEECHHHHHHHHHHHTCE-E----EETTEEEEEGGGGGGSCCEEEEETTEEEEECTTTSEEEETTTTSS
T ss_pred             CEEEEECCCccccCCHHHHHHHHHHhCCe-e----ccCCcEEEECCCCccCCeEEEEECCEEEEECHHHhEEEccCCCCC
Confidence            47999999999999999887763221100 0    012221 22211  12446666666554321              


Q ss_pred             -EE--EecC-----CCCcEEecHHHHhhcCCeEeeccceEEEEE
Q 036248          263 -FH--ILDF-----SRADAVLGVQWLEKLGKIITDHKALTMEFT  298 (301)
Q Consensus       263 -~~--v~~~-----~~~d~ILG~dwL~~~~~i~id~~~~~~~~~  298 (301)
                       |.  +.+.     .+-..|||..||+.+-. ..|+.+++|.|.
T Consensus       196 ~C~~~~~~~~~~~~~~~~~ilG~~fl~~~y~-vfD~~~~~igfA  238 (241)
T 1lya_B          196 LCLSGFMGMDIPPPSGPLWILGDVFIGRYYT-VFDRDNNRVGFA  238 (241)
T ss_dssp             EEEESEEECCCCTTTCCCEEECHHHHTTEEE-EEETTTTEEEEE
T ss_pred             eeEEEEEecccCCCCCCeEEechHHhcceEE-EEECCCCEEEEE
Confidence             11  2222     23568999999999994 899999999885

>1am5_A Pepsin, acid proteinase; aspartyl protease, hydrolase; 2.16A {Gadus morhua} SCOP: b.50.1.2

Probab=94.45  E-value=0.12  Score=44.75  Aligned_cols=99  Identities=15%  Similarity=0.171  Sum_probs=62.6

Q ss_pred             EEcCEe-----EEEEEcCCCCccccCHHHHHHcCcceecccceEEEEecCce-Eeecc--eeeeEEEEEeceeEEEe---
Q 036248          194 KINNKP-----LSVLIDTGSTHNYLHPRLAHFLHLAIEKTMSFLVAVGNGER-IRSEG--HCSKVKFEMQGVGFEAD---  262 (301)
Q Consensus       194 ~v~~~~-----v~~liDsGAs~~~i~~~~~~~~~~~~~~~~~~~v~~~~g~~-~~~~~--~~~~~~~~~~~~~~~~~---  262 (301)
                      .|+|+.     ..++||||++..++..+.+..+.-.....      ..+|.. +.+..  ..+.+.+.++|..+.+.   
T Consensus       198 ~v~~~~~~~~~~~aiiDSGTt~~~lp~~~~~~l~~~~~~~------~~~g~~~~~C~~~~~~P~i~f~f~g~~~~i~~~~  271 (324)
T 1am5_A          198 TVNGQTAACEGCQAIVDTGTSKIVAPVSALANIMKDIGAS------ENQGEMMGNCASVQSLPDITFTINGVKQPLPPSA  271 (324)
T ss_dssp             EETTEECCCCCEEEEECTTCSSEEECTTTHHHHHHHHTCE------ECCCCEECCTTSSSSSCCEEEEETTEEEEECHHH
T ss_pred             EECCceeeccCceEEEecCCccEECCHHHHHHHHHHhCCc------ccCCcEEEeCCCcccCCcEEEEECCEEEEECHHH
Confidence            566654     57999999999999988777653221110      112321 12211  23456777777665431   


Q ss_pred             --------EE--EecC-----CCCcEEecHHHHhhcCCeEeeccceEEEEEe
Q 036248          263 --------FH--ILDF-----SRADAVLGVQWLEKLGKIITDHKALTMEFTY  299 (301)
Q Consensus       263 --------~~--v~~~-----~~~d~ILG~dwL~~~~~i~id~~~~~~~~~~  299 (301)
                              +.  +.+.     .+-..|||..||+.+- +..|..+++|.|..
T Consensus       272 y~~~~~~~C~~~~~~~~~~~~~~~~~ilG~~fl~~~y-~vfD~~~~~igfa~  322 (324)
T 1am5_A          272 YIEGDQAFCTSGLGSSGVPSNTSELWIFGDVFLRNYY-TIYDRTNNKVGFAP  322 (324)
T ss_dssp             HEEESSSCEEECEEECCSCCSSSCEEEECHHHHHHEE-EEEETTTTEEEEEE
T ss_pred             hcccCCCeEEEEEEECccCCCCCCcEEEChHHhccEE-EEEECCCCEEEEEE
Confidence                    11  2222     1346899999999999 48999999998853

>3cms_A Chymosin B; hydrolase, acid proteinase; 2.00A {Bos taurus} SCOP: b.50.1.2 PDB: 4cms_A 1czi_E* 1cms_A

Probab=94.18  E-value=0.2  Score=43.25  Aligned_cols=101  Identities=17%  Similarity=0.168  Sum_probs=62.3

Q ss_pred             EEEcCEeE------EEEEcCCCCccccCHHHHHHcCcceecccceEEEEecCce-Eeec--ceeeeEEEEEeceeEEEe-
Q 036248          193 AKINNKPL------SVLIDTGSTHNYLHPRLAHFLHLAIEKTMSFLVAVGNGER-IRSE--GHCSKVKFEMQGVGFEAD-  262 (301)
Q Consensus       193 ~~v~~~~v------~~liDsGAs~~~i~~~~~~~~~~~~~~~~~~~v~~~~g~~-~~~~--~~~~~~~~~~~~~~~~~~-  262 (301)
                      +.|+|+.+      .++||||++..++..+.+..+.-..... .    ..+|.. +.+.  ...+.+.+.++|..+.+. 
T Consensus       198 i~v~~~~~~~~~~~~aiiDSGTt~~~lP~~~~~~l~~~~~~~-~----~~~g~~~~~C~~~~~~P~i~f~f~g~~~~i~~  272 (323)
T 3cms_A          198 VTISGVVVACEGGCQAILDTGTSKLVGPSSDILNIQQAIGAT-Q----NQYGEFDIDCDNLSYMPTVVFEINGKMYPLTP  272 (323)
T ss_dssp             EEETTEEEESTTCEEEEECTTCCSEEECHHHHHHHHHHHTCE-E----ETTTEEEECTTCTTTSCCEEEEETTEEEEECH
T ss_pred             EEECCEEeecCCCcEEEEecCCccEeCCHHHHHHHHHHhCCe-e----cCCCcEEEECCCCccCceEEEEECCEEEEECH
Confidence            36777654      6999999999999998877653222100 0    011211 1121  123456777777665432 


Q ss_pred             ----------EE--EecC-CCCcEEecHHHHhhcCCeEeeccceEEEEEe
Q 036248          263 ----------FH--ILDF-SRADAVLGVQWLEKLGKIITDHKALTMEFTY  299 (301)
Q Consensus       263 ----------~~--v~~~-~~~d~ILG~dwL~~~~~i~id~~~~~~~~~~  299 (301)
                                +.  +.+. .+-..|||..||+.+- +..|..+++|.|..
T Consensus       273 ~~y~~~~~~~C~~~i~~~~~~~~~iLG~~fl~~~y-~vfD~~~~~igfA~  321 (323)
T 3cms_A          273 SAYTSQDQGFCTSGFQSENHSQKWILGDVFIREYY-SVFDRANNLVGLAK  321 (323)
T ss_dssp             HHHEEEETTEEEESEEEC---CCEEECHHHHTTEE-EEEETTTTEEEEEE
T ss_pred             HHhccCCCCEEEEEEEeCCCCCcEEECHHHhhceE-EEEECCCCEEEEEE
Confidence                      11  2222 2356899999999999 48999999998853

>2apr_A Rhizopuspepsin; hydrolase (aspartic proteinase); 1.80A {Rhizopus microsporus var} SCOP: b.50.1.2 PDB: 3apr_E* 4apr_E* 5apr_E* 6apr_E* 1uh9_A 1uh8_A 1uh7_A

Probab=94.14  E-value=0.13  Score=44.46  Aligned_cols=92  Identities=14%  Similarity=0.152  Sum_probs=54.1

Q ss_pred             eEEEEEcCCCCccccCHH----HHHHcCcceecccceEEEEecCceEeecce-eeeEEEEEeceeEEEe-----------
Q 036248          199 PLSVLIDTGSTHNYLHPR----LAHFLHLAIEKTMSFLVAVGNGERIRSEGH-CSKVKFEMQGVGFEAD-----------  262 (301)
Q Consensus       199 ~v~~liDsGAs~~~i~~~----~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~-----------  262 (301)
                      ...++||||++..++..+    +++.+.-......        +-.+.+... .+.+.+.++|..+.+.           
T Consensus       212 ~~~~iiDSGTs~~~lP~~~~~~~~~~~~~~~~~~g--------~~~~~C~~~~~p~i~f~f~g~~~~ip~~~~~~~~~~~  283 (325)
T 2apr_A          212 SFDGILDTGTTLLILPNNIAASVARAYGASDNGDG--------TYTISCDTSAFKPLVFSINGASFQVSPDSLVFEEFQG  283 (325)
T ss_dssp             CEEEEECTTCSSEEEEHHHHHHHHHHHTCEECSSS--------CEEECSCGGGCCCEEEEETTEEEEECGGGGEEEEETT
T ss_pred             CceEEEecCCccEECCHHHHHHHHHHHhcccCCCC--------eEEEECCCCCCCcEEEEECCEEEEECHHHEEEcCCCC
Confidence            357999999999999999    6555543221100        011111111 2344445443332211           


Q ss_pred             -EE--EecCCCCcEEecHHHHhhcCCeEeeccceEEEEEe
Q 036248          263 -FH--ILDFSRADAVLGVQWLEKLGKIITDHKALTMEFTY  299 (301)
Q Consensus       263 -~~--v~~~~~~d~ILG~dwL~~~~~i~id~~~~~~~~~~  299 (301)
                       ++  +.....-..|||..||+.+- +..|+.+++|.|..
T Consensus       284 ~C~~~i~~~~~~~~iLG~~fl~~~y-~vfD~~~~~igfA~  322 (325)
T 2apr_A          284 QCIAGFGYGNWGFAIIGDTFLKNNY-VVFNQGVPEVQIAP  322 (325)
T ss_dssp             EEEESEEEESSSSEEECHHHHTTEE-EEEETTTTEEEEEE
T ss_pred             eEEEEEEcCCCCCEEECHHHhcceE-EEEECCCCEEEEEe
Confidence             11  11112345899999999999 48999999999853

>1yg9_A Aspartic protease BLA G 2; allegren, hydrolase, allergen; HET: NAG; 1.30A {Blattella germanica} PDB: 2nr6_A* 3liz_A*

Probab=94.11  E-value=0.2  Score=43.50  Aligned_cols=100  Identities=15%  Similarity=0.156  Sum_probs=64.5

Q ss_pred             EEEcCEe-----EEEEEcCCCCccccCHHHHHHcCcceecccceEEEEecC--c--eEeecc--eeeeEEEEEeceeEEE
Q 036248          193 AKINNKP-----LSVLIDTGSTHNYLHPRLAHFLHLAIEKTMSFLVAVGNG--E--RIRSEG--HCSKVKFEMQGVGFEA  261 (301)
Q Consensus       193 ~~v~~~~-----v~~liDsGAs~~~i~~~~~~~~~~~~~~~~~~~v~~~~g--~--~~~~~~--~~~~~~~~~~~~~~~~  261 (301)
                      +.|+|+.     ..++||||++..++..+.+..+.-.....     ...+|  .  .+.+..  ..+.+.+.++|..+.+
T Consensus       202 i~v~~~~~~~~~~~aiiDSGTs~~~lP~~~~~~l~~~~~~~-----~~~~g~~~~~~~~C~~~~~~p~i~f~fgg~~~~l  276 (330)
T 1yg9_A          202 VKIGDTTVAPAGTQAIIDTSKAIIVGPKAYVNPINEAIGCV-----VEKTTTRRICKLDCSKIPSLPDVTFVINGRNFNI  276 (330)
T ss_dssp             EEETTEEEECTTCEEEECTTCSSEEEEHHHHHHHHHHHTCE-----EEECSSCEEEEECGGGGGGSCCEEEEETTEEEEE
T ss_pred             EEECCEEEcCCCcEEEEecCCccccCCHHHHHHHHHHhCCc-----ccCCCceEEEEEECCCccccCcEEEEECCEEEEE
Confidence            3667654     46999999999999999887763322110     01123  1  122321  2356778888777654


Q ss_pred             e-----------EE--EecC-CCCcEEecHHHHhhcCCeEeeccceEEEEE
Q 036248          262 D-----------FH--ILDF-SRADAVLGVQWLEKLGKIITDHKALTMEFT  298 (301)
Q Consensus       262 ~-----------~~--v~~~-~~~d~ILG~dwL~~~~~i~id~~~~~~~~~  298 (301)
                      .           +.  +.+. .+-..|||..||+.+-. ..|+.+++|.|.
T Consensus       277 ~~~~y~~~~~~~C~~~i~~~~~~~~~ilG~~fl~~~y~-vfD~~~~riGfA  326 (330)
T 1yg9_A          277 SSQYYIQQNGNLCYSGFQPCGHSDHFFIGDFFVDHYYS-EFNWENKTMGFG  326 (330)
T ss_dssp             CHHHHEEEETTEEEESEEEETTCSSEEECHHHHTTEEE-EEETTTTEEEEE
T ss_pred             CHHHhcccCCCcEEEEEEeCCCCCeEEecHHHhhheEE-EEECCCCEEEEE
Confidence            2           11  1221 23468999999999994 899999999885

>4aa9_A Chymosin; hydrolase, aspartic peptidase, rennet; HET: NAG; 1.60A {Camelus dromedarius} PDB: 4aa8_A 1czi_E* 1cms_A 4cms_A 3cms_A

Probab=93.80  E-value=0.17  Score=43.51  Aligned_cols=99  Identities=17%  Similarity=0.206  Sum_probs=60.5

Q ss_pred             EEcCEe------EEEEEcCCCCccccCHHHHHHcCcceecccceEEEEecCce-Eeecc--eeeeEEEEEeceeEEEe--
Q 036248          194 KINNKP------LSVLIDTGSTHNYLHPRLAHFLHLAIEKTMSFLVAVGNGER-IRSEG--HCSKVKFEMQGVGFEAD--  262 (301)
Q Consensus       194 ~v~~~~------v~~liDsGAs~~~i~~~~~~~~~~~~~~~~~~~v~~~~g~~-~~~~~--~~~~~~~~~~~~~~~~~--  262 (301)
                      .|+|..      ..++||||++..++..+.+..+.-.....     ...+|.. +.+..  ..+.+.+.++|..+.+.  
T Consensus       196 ~v~~~~~~~~~~~~~iiDsGtt~~~lP~~~~~~i~~~~~~~-----~~~~g~~~~~C~~~~~~p~i~f~f~g~~~~l~~~  270 (320)
T 4aa9_A          196 TINGVAVACVGGCQAILDTGTSVLFGPSSDILKIQMAIGAT-----ENRYGEFDVNCGNLRSMPTVVFEINGRDYPLSPS  270 (320)
T ss_dssp             EETTEEEESTTCEEEEECTTCSSEEEEHHHHHHHHHHTTCE-----ECTTSCEEECGGGGGGCCCEEEEETTEEEEECHH
T ss_pred             EECCEEeccCCCcEEEEECCCCcEECCHHHHHHHHHHhCCc-----ccCCCcEEEeCCCCCcCceEEEEECCEEEEECHH
Confidence            566653      46999999999999998877753221100     0011211 11211  12456666666655432  


Q ss_pred             ---------EE--EecC-CCCcEEecHHHHhhcCCeEeeccceEEEEE
Q 036248          263 ---------FH--ILDF-SRADAVLGVQWLEKLGKIITDHKALTMEFT  298 (301)
Q Consensus       263 ---------~~--v~~~-~~~d~ILG~dwL~~~~~i~id~~~~~~~~~  298 (301)
                               +.  +.+. .+-..|||..||+.+- +..|+.+++|.|.
T Consensus       271 ~y~~~~~~~C~~~i~~~~~~~~~ilG~~fl~~~y-~vfD~~~~~igfA  317 (320)
T 4aa9_A          271 AYTSKDQGFCTSGFQGDNNSELWILGDVFIREYY-SVFDRANNRVGLA  317 (320)
T ss_dssp             HHEEEETTEEEESEEEETTCCCEEECHHHHTTEE-EEEETTTTEEEEE
T ss_pred             HhccCCCCeEEEEEEcCCCCCcEEEChHHhcceE-EEEECCCCEEEEE
Confidence                     11  1111 2245999999999999 4899999999885

>1tzs_A Cathepsin E; hydrolase, aspartic protease, activation intermediate; 2.35A {Homo sapiens}

Probab=93.76  E-value=0.33  Score=42.46  Aligned_cols=100  Identities=13%  Similarity=0.170  Sum_probs=58.6

Q ss_pred             EEcCEe------EEEEEcCCCCccccCHHHHHHcCcceecccceEEEEecCceEeecc--eeeeEEEEEeceeEEEe---
Q 036248          194 KINNKP------LSVLIDTGSTHNYLHPRLAHFLHLAIEKTMSFLVAVGNGERIRSEG--HCSKVKFEMQGVGFEAD---  262 (301)
Q Consensus       194 ~v~~~~------v~~liDsGAs~~~i~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~--~~~~~~~~~~~~~~~~~---  262 (301)
                      .|+|+.      ..++||||++..++..+.+..+.-..... ..    .+.-.+.+..  ..+.+.+.++|..+.+.   
T Consensus       211 ~v~~~~~~~~~~~~aiiDSGTs~~~lP~~~~~~l~~~~~~~-~~----~g~~~~~C~~~~~~P~i~f~f~g~~~~i~~~~  285 (351)
T 1tzs_A          211 QVGGTVMFCSEGCQAIVDTGTSLITGPSDKIKQLQNAIGAA-PV----DGEYAVECANLNVMPDVTFTINGVPYTLSPTA  285 (351)
T ss_dssp             EETTEEEECTTCEEEEECTTCSSEEECHHHHHHHHHHHTCE-EC----SSSEEECGGGGGGSCCEEEEETTEEEEECTTT
T ss_pred             EECCceEEcCCCceEEeccCCcceeCCHHHHHHHHHHhCCc-cc----CCeEEEeCCCCccCCcEEEEECCEEEEECHHH
Confidence            667765      36999999999999999877653211100 00    0000111111  12344555555443221   


Q ss_pred             ------------EE--EecC-----CCCcEEecHHHHhhcCCeEeeccceEEEEEe
Q 036248          263 ------------FH--ILDF-----SRADAVLGVQWLEKLGKIITDHKALTMEFTY  299 (301)
Q Consensus       263 ------------~~--v~~~-----~~~d~ILG~dwL~~~~~i~id~~~~~~~~~~  299 (301)
                                  +.  +.+.     ..-..|||..||+.+- +..|+.+++|.|..
T Consensus       286 yi~~~~~~~~~~C~~~~~~~~~~~~~~~~~iLG~~fl~~~y-~vfD~~~~rigfA~  340 (351)
T 1tzs_A          286 YTLLDFVDGMQFCSSGFQGLDIHPPAGPLWILGDVFIRQFY-SVFDRGNNRVGLAP  340 (351)
T ss_dssp             SEECC-----CCEEESEEECCCCTTTCSCEEECHHHHHHEE-EEEETTTTEEEEEE
T ss_pred             hEeeccCCCCCeEEEEEEECCCCCCCCCeEEEChHHhhheE-EEEECCCCEEEEEE
Confidence                        11  2221     2346899999999999 48999999999853

>1dpj_A Proteinase A; proteinase A, hydrolase-hydrolase inhibitor COM; HET: BMA MAN NAG; 1.80A {Saccharomyces cerevisiae} SCOP: b.50.1.2 PDB: 1dp5_A* 1fmu_A* 1fmx_A* 1fq5_A* 1fq4_A* 1fq6_A* 1fq7_A* 1fq8_A* 2jxr_A* 1g0v_A*

Probab=93.61  E-value=0.32  Score=42.06  Aligned_cols=100  Identities=19%  Similarity=0.229  Sum_probs=60.0

Q ss_pred             EEcCEe-----EEEEEcCCCCccccCHHHHHHcCcceecccceEEEEecCce-Eeecc--eeeeEEEEEeceeEEEe---
Q 036248          194 KINNKP-----LSVLIDTGSTHNYLHPRLAHFLHLAIEKTMSFLVAVGNGER-IRSEG--HCSKVKFEMQGVGFEAD---  262 (301)
Q Consensus       194 ~v~~~~-----v~~liDsGAs~~~i~~~~~~~~~~~~~~~~~~~v~~~~g~~-~~~~~--~~~~~~~~~~~~~~~~~---  262 (301)
                      .|++..     ..++||||++..++..+.++.+.-.....     ...+|.. +.+..  ..+.+.+.++|..+.+.   
T Consensus       202 ~v~~~~~~~~~~~aiiDSGTt~~~lP~~~~~~l~~~~~~~-----~~~~g~~~~~C~~~~~~P~i~f~f~g~~~~i~~~~  276 (329)
T 1dpj_A          202 GLGDEYAELESHGAAIDTGTSLITLPSGLAEMINAEIGAK-----KGWTGQYTLDCNTRDNLPDLIFNFNGYNFTIGPYD  276 (329)
T ss_dssp             EETTEEEECSSCEEEECTTCSCEEECHHHHHHHHHHHTCE-----ECTTSSEEECGGGGGGCCCEEEEETTEEEEECTTT
T ss_pred             EECCeEecCCCccEEeeCCCCcEECCHHHHHHHHHHhCCc-----cCCCCeEEEECCCCCcCCcEEEEECCEEEEECHHH
Confidence            566654     35999999999999999887763221100     0011211 11211  12345566665544321   


Q ss_pred             --------EE--EecC-----CCCcEEecHHHHhhcCCeEeeccceEEEEEe
Q 036248          263 --------FH--ILDF-----SRADAVLGVQWLEKLGKIITDHKALTMEFTY  299 (301)
Q Consensus       263 --------~~--v~~~-----~~~d~ILG~dwL~~~~~i~id~~~~~~~~~~  299 (301)
                              +.  +.+.     .+-..|||..||+.+- +..|+.+++|.|..
T Consensus       277 y~~~~~~~C~~~~~~~~~~~~~~~~~iLG~~fl~~~y-~vfD~~~~~igfA~  327 (329)
T 1dpj_A          277 YTLEVSGSCISAITPMDFPEPVGPLAIVGDAFLRKYY-SIYDLGNNAVGLAK  327 (329)
T ss_dssp             SEEEETTEEEECEEECCCCTTTCSEEEECHHHHTTEE-EEEETTTTEEEEEE
T ss_pred             hEecCCCEEEEEEEecccCCCCCCcEEEChHHhcceE-EEEECCCCEEEEEE
Confidence                    11  1222     2346899999999999 48999999998853

>3fv3_A SAPP1P-secreted aspartic protease 1; secreted aspartic protease, virulence factor, H; HET: STA; 1.85A {Candida parapsilosis} SCOP: b.50.1.0 PDB: 3tne_A*

Probab=93.49  E-value=0.46  Score=41.19  Aligned_cols=103  Identities=17%  Similarity=0.247  Sum_probs=58.6

Q ss_pred             EEcCEeE----EEEEcCCCCccccCHHHHHHcCcceecccceEEEEecCc-eEeecc-eeeeEEEEE-eceeEEEeE--E
Q 036248          194 KINNKPL----SVLIDTGSTHNYLHPRLAHFLHLAIEKTMSFLVAVGNGE-RIRSEG-HCSKVKFEM-QGVGFEADF--H  264 (301)
Q Consensus       194 ~v~~~~v----~~liDsGAs~~~i~~~~~~~~~~~~~~~~~~~v~~~~g~-~~~~~~-~~~~~~~~~-~~~~~~~~~--~  264 (301)
                      .|+|+.+    .++||||.+..++..+.+..+.-....... ......|. .+.+.. ..+.+.+.+ +|..+.+..  +
T Consensus       205 ~v~g~~~~~~~~~iiDSGtt~~~lP~~~~~~i~~~~~~~~~-~~~~~~~~~~~~C~~~~~p~i~f~f~~g~~~~v~~~~~  283 (339)
T 3fv3_A          205 NLKGSSFSFGDGALLDSGTTLTYFPSDFAAQLADKAGARLV-QVARDQYLYFIDCNTDTSGTTVFNFGNGAKITVPNTEY  283 (339)
T ss_dssp             EESSCEEEEEEEEEECTTBSSEEECHHHHHHHHHHHTCEEE-EEETTEEEEEECTTCCCCSEEEEEETTSCEEEEEGGGG
T ss_pred             EECCEeecCCccEEEeCCCCCEecCHHHHHHHHHHcCCEEc-cccccCceEEEecCCCCCCcEEEEECCCCEEEECHHHh
Confidence            5677544    599999999999999988776322210000 00000010 111111 123466666 355443321  1


Q ss_pred             EecCC----------CCcEEecHHHHhhcCCeEeeccceEEEEE
Q 036248          265 ILDFS----------RADAVLGVQWLEKLGKIITDHKALTMEFT  298 (301)
Q Consensus       265 v~~~~----------~~d~ILG~dwL~~~~~i~id~~~~~~~~~  298 (301)
                      +++..          .-..|||..||+.+- +..|+.+++|.|.
T Consensus       284 ~~~~~~~~C~~~i~~~~~~ilG~~fl~~~y-~vfD~~~~~igfA  326 (339)
T 3fv3_A          284 VYQNGDGTCLWGIQPSDDTILGDNFLRHAY-LLYNLDANTISIA  326 (339)
T ss_dssp             EEECSSSCEEESEEECSSCEECHHHHTTEE-EEEETTTTEEEEE
T ss_pred             eeeCCCCeEEEEEEeCCcEEeChHHHhCEE-EEEECCCCEEEEE
Confidence            11100          124799999999999 5899999999985

>3qvc_A Histo-aspartic protease; HAP, plasmepsin, zymogen, hydrolase; 2.10A {Plasmodium falciparum} PDB: 3qvi_A* 3fns_A 3fnt_A* 3fnu_A*

Probab=93.47  E-value=0.16  Score=46.20  Aligned_cols=101  Identities=11%  Similarity=0.095  Sum_probs=63.3

Q ss_pred             EEEcCE---eEEEEEcCCCCccccCHHHHHHcCcceecccceEEEEecCc-eEeec-ceeeeEEEEEeceeEEEeE---E
Q 036248          193 AKINNK---PLSVLIDTGSTHNYLHPRLAHFLHLAIEKTMSFLVAVGNGE-RIRSE-GHCSKVKFEMQGVGFEADF---H  264 (301)
Q Consensus       193 ~~v~~~---~v~~liDsGAs~~~i~~~~~~~~~~~~~~~~~~~v~~~~g~-~~~~~-~~~~~~~~~~~~~~~~~~~---~  264 (301)
                      +.|+|.   ...++||||++..++..+.+..+.-.....    ..-..|. .+.+. ...+.+.+.++|..+.+..   +
T Consensus       322 I~Vgg~~~~~~~aiiDSGTt~i~lP~~~~~~i~~~i~a~----~~~~~g~y~v~C~~~~~P~itf~fgg~~i~lp~~~yi  397 (451)
T 3qvc_A          322 VHFGNVSSKKANVILDSATSVITVPTEFFNQFVESASVF----KVPFLSLYVTTCGNTKLPTLEYRSPNKVYTLEPKQYL  397 (451)
T ss_dssp             EEETTEEEEEEEEEECTTBSSEEECHHHHHHHHTTTTCE----ECTTSSCEEEETTCTTCCCEEEEETTEEEEECHHHHE
T ss_pred             EEECCccCCCceEEEeCCCccccCCHHHHHHHHHHcCCe----ecCCCCeEEeeCCcCcCCcEEEEECCEEEEEcHHHhe
Confidence            455653   457999999999999999888764322100    0000121 12222 2234677777776665421   1


Q ss_pred             --------------EecCC--CCcEEecHHHHhhcCCeEeeccceEEEEE
Q 036248          265 --------------ILDFS--RADAVLGVQWLEKLGKIITDHKALTMEFT  298 (301)
Q Consensus       265 --------------v~~~~--~~d~ILG~dwL~~~~~i~id~~~~~~~~~  298 (301)
                                    +.+..  +-..|||..||+.+-. ..|+.+++|.|.
T Consensus       398 ~~~~~~~~~~C~~~i~~~~~~~~~~ILG~~FLr~~Yv-VfD~~n~rIGfA  446 (451)
T 3qvc_A          398 EPLENIFSALCMLNIVPIDLEKNTFVLGDPFMRKYFT-VYDYDNHTVGFA  446 (451)
T ss_dssp             EECTTTSTTEEEECEEECCCSTTEEEECHHHHHHEEE-EEETTTTEEEEE
T ss_pred             eecccCCCCeEEEEEEeCCCCCCCEEECHHHhhcEEE-EEECCCCEEEEE
Confidence                          12222  3458999999999995 899999999884

>2x0b_A Renin; hydrolase-hormone complex, hydrolase hormone complex, vasoconstrictor, glycoprotein, hypertension, serpins; 4.33A {Homo sapiens}

Probab=93.38  E-value=0.25  Score=43.83  Aligned_cols=98  Identities=14%  Similarity=0.173  Sum_probs=62.5

Q ss_pred             EEcCEe------EEEEEcCCCCccccCHHHHHHcCcceecccceEEEEecCce-Eeecc--eeeeEEEEEeceeEEEe--
Q 036248          194 KINNKP------LSVLIDTGSTHNYLHPRLAHFLHLAIEKTMSFLVAVGNGER-IRSEG--HCSKVKFEMQGVGFEAD--  262 (301)
Q Consensus       194 ~v~~~~------v~~liDsGAs~~~i~~~~~~~~~~~~~~~~~~~v~~~~g~~-~~~~~--~~~~~~~~~~~~~~~~~--  262 (301)
                      .|+|+.      ..++||||.+..++..+.+..+.-....   ..   .+|.. +.+..  ..+.+.+.++|..+.+.  
T Consensus       252 ~v~~~~~~~~~~~~aiiDTGTs~~~lP~~~~~~i~~~i~a---~~---~~g~~~v~C~~~~~~P~i~f~~~g~~~~l~~~  325 (383)
T 2x0b_A          252 SVGSSTLLCEDGCLALVDTGASYISGSTSSIEKLMEALGA---KK---RLFDYVVKCNEGPTLPDISFHLGGKEYTLTSA  325 (383)
T ss_dssp             EESSCCCBSTTCEEEEECTTCSSEEECHHHHHHHHHHHTC---EE---CSSCEEEEGGGTTTCCCEEEEETTEEEEECHH
T ss_pred             EeCCceEEcCCCcEEEEcCCCceEEcCHHHHHHHHHHhCC---cc---cCCcEEEeccccccCceEEEEECCEEEEECHH
Confidence            566654      5799999999999999888776322210   00   22321 22221  23457777777666431  


Q ss_pred             -------------EE--EecC-----CCCcEEecHHHHhhcCCeEeeccceEEEEE
Q 036248          263 -------------FH--ILDF-----SRADAVLGVQWLEKLGKIITDHKALTMEFT  298 (301)
Q Consensus       263 -------------~~--v~~~-----~~~d~ILG~dwL~~~~~i~id~~~~~~~~~  298 (301)
                                   +.  +.+.     .+-..|||..||+.+-. ..|+.+++|.|.
T Consensus       326 ~yi~~~~~~~~~~C~~~~~~~~~~~~~~~~~ILGd~Fl~~~y~-vfD~~~~rIGfA  380 (383)
T 2x0b_A          326 DYVFQESYSSKKLCTLAIHAMDIPPPTGPTWALGATFIRKFYT-EFDRRNNRIGFA  380 (383)
T ss_dssp             HHBCCCCCCTTSEEEBSEEECCCCTTTCSCEEECHHHHTTEEE-EEETTTTEEEEE
T ss_pred             HhEeeccCCCCCeEEEEEEecccCCCCCCcEEEChHHhcceEE-EEECCCCEEeEE
Confidence                         11  1111     13468999999999995 899999999885

>3k1w_A Renin; protease, alternative splicing, aspartyl protease, cleavage on PAIR of basic residues, disease mutation, disulfide bond, glycoprotein; HET: BFX NDG HSQ; 1.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 3d91_A* 3g70_A* 3g6z_A* 3own_A* 2iko_A* 1bbs_A* 1rne_A* 2bkt_A* 2bks_A* 2iku_A* 2il2_A* 2ren_A* 2v0z_C* 2v10_C* 2v11_C* 2v12_C* 2v13_A* 2v16_C* 3g72_A* 3oot_A* ...

Probab=93.25  E-value=0.24  Score=43.03  Aligned_cols=99  Identities=14%  Similarity=0.139  Sum_probs=61.5

Q ss_pred             EEcCEe------EEEEEcCCCCccccCHHHHHHcCcceecccceEEEEecCceEeecc--eeeeEEEEEeceeEEEeE--
Q 036248          194 KINNKP------LSVLIDTGSTHNYLHPRLAHFLHLAIEKTMSFLVAVGNGERIRSEG--HCSKVKFEMQGVGFEADF--  263 (301)
Q Consensus       194 ~v~~~~------v~~liDsGAs~~~i~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~--~~~~~~~~~~~~~~~~~~--  263 (301)
                      .|++..      ..++||||.+..++..+.+..+.-.....    . ..+|-.+.+..  ..+.+.+.++|..+.+..  
T Consensus       209 ~v~~~~~~~~~~~~~iiDsGtt~~~lP~~~~~~i~~~~~~~----~-~~~g~~~~C~~~~~~p~i~f~f~g~~~~l~~~~  283 (341)
T 3k1w_A          209 SVGSSTLLCEDGCLALVDTGASYISGSTSSIEKLMEALGAK----K-RLFDYVVKCNEGPTLPDISFHLGGKEYTLTSAD  283 (341)
T ss_dssp             EETTEEEECTTCEEEEECTTCSSEEECHHHHHHHHHHHTCE----E-CSSCEEEEGGGGGGCCCEEEEETTEEEEECHHH
T ss_pred             EECCEEeecCCCCEEEEECCCChhcCCHHHHHHHHHHcCCe----e-cCCCeEEeCCCCCcCCcEEEEECCEEEEECHHH
Confidence            556653      47999999999999998877763221100    0 01121122221  224567777776654321  


Q ss_pred             -------------E--Eec-----CCCCcEEecHHHHhhcCCeEeeccceEEEEE
Q 036248          264 -------------H--ILD-----FSRADAVLGVQWLEKLGKIITDHKALTMEFT  298 (301)
Q Consensus       264 -------------~--v~~-----~~~~d~ILG~dwL~~~~~i~id~~~~~~~~~  298 (301)
                                   .  +..     ..+-..|||..||+.+-. ..|+.+++|.|.
T Consensus       284 ~~~~~~~~~~~~C~~~i~~~~~~~~~~~~~iLG~~fl~~~y~-vfD~~~~~igfA  337 (341)
T 3k1w_A          284 YVFQESYSSKKLCTLAIHAMDIPPPTGPTWALGATFIRKFYT-EFDRRNNRIGFA  337 (341)
T ss_dssp             HBCCSCCCTTSEEEBSEEECCCCTTTCSCEEECHHHHTTEEE-EEETTTTEEEEE
T ss_pred             heeEccCCCCCeEEeEEEecccCCCCCCeEEEChHHhcceEE-EEeCCCCEEEEE
Confidence                         1  111     113468999999999994 899999999885

>1wkr_A Polyporopepsin; hydrolase, hydrolase-hydrolase inhibitor complex; HET: STA; 1.30A {Irpex lacteus} SCOP: b.50.1.2

Probab=93.08  E-value=0.19  Score=43.78  Aligned_cols=102  Identities=17%  Similarity=0.268  Sum_probs=60.2

Q ss_pred             EEEcC-EeE----EEEEcCCCCccccCHHHHHHcCcceecccceEEEEecCc-eEeec--ceeeeEEEEEeceeEEEe--
Q 036248          193 AKINN-KPL----SVLIDTGSTHNYLHPRLAHFLHLAIEKTMSFLVAVGNGE-RIRSE--GHCSKVKFEMQGVGFEAD--  262 (301)
Q Consensus       193 ~~v~~-~~v----~~liDsGAs~~~i~~~~~~~~~~~~~~~~~~~v~~~~g~-~~~~~--~~~~~~~~~~~~~~~~~~--  262 (301)
                      +.|++ +.+    .++||||.+..++..+.+..+.-....    ......|. .+.+.  ...+.+.+.++|..+.+.  
T Consensus       195 i~v~~~~~l~~~~~aiiDSGTt~~~lP~~~~~~l~~~~~a----~~~~~~g~~~~~C~~~~~~p~i~f~f~g~~~~i~~~  270 (340)
T 1wkr_A          195 IRYGSSTSILSSTAGIVDTGTTLTLIASDAFAKYKKATGA----VADNNTGLLRLTTAQYANLQSLFFTIGGQTFELTAN  270 (340)
T ss_dssp             EEETTTEEEEEEEEEEECTTBCSEEECHHHHHHHHHHHTC----EECTTTSSEEECHHHHHTCCCEEEEETTEEEEECTG
T ss_pred             EEECCCeEccCCCeEEEeCCcccccCCHHHHHHHHHhhCC----EEcCCCCeEEeeccccccCCcEEEEECCEEEEEcHH
Confidence            45666 544    799999999999999988876211110    00000111 11111  112345566666554421  


Q ss_pred             ------------------E--EEecCC-----CCcEEecHHHHhhcCCeEeeccceEEEEEe
Q 036248          263 ------------------F--HILDFS-----RADAVLGVQWLEKLGKIITDHKALTMEFTY  299 (301)
Q Consensus       263 ------------------~--~v~~~~-----~~d~ILG~dwL~~~~~i~id~~~~~~~~~~  299 (301)
                                        +  .+.+..     +...|||..||+.+- +..|+.+++|.|..
T Consensus       271 ~yi~~~~~~~~~g~~~~~c~~~~~~~~~~~~~~~~~iLG~~fl~~~y-~vfD~~~~~igfA~  331 (340)
T 1wkr_A          271 AQIWPRNLNTAIGGSASSVYLIVGDLGSDSGEGLDFINGLTFLERFY-SVYDTTNKRLGLAT  331 (340)
T ss_dssp             GGBCCGGGGGGGTCCSSCEEBCEEECSSCTTSSCCEEECHHHHTSEE-EEEETTTTEEEEEE
T ss_pred             HhccccccccccCCCCceEEEEEecCCCCCCCCcceEeChHhhhheE-EEEeCCCCeEEEEe
Confidence                              1  112211     235899999999999 48999999999853

>1j71_A Candidapepsin, aspartic proteinase; candida tropicalis aspartic protease, SAPT1, hydrolase; 1.80A {Candida tropicalis} SCOP: b.50.1.2

Probab=92.85  E-value=0.24  Score=42.94  Aligned_cols=97  Identities=19%  Similarity=0.282  Sum_probs=56.9

Q ss_pred             EEEcCEeE----EEEEcCCCCccccCHHHHHHcCcceecccceEEEEecC-ce--EeecceeeeEEEEE-eceeEEEe--
Q 036248          193 AKINNKPL----SVLIDTGSTHNYLHPRLAHFLHLAIEKTMSFLVAVGNG-ER--IRSEGHCSKVKFEM-QGVGFEAD--  262 (301)
Q Consensus       193 ~~v~~~~v----~~liDsGAs~~~i~~~~~~~~~~~~~~~~~~~v~~~~g-~~--~~~~~~~~~~~~~~-~~~~~~~~--  262 (301)
                      +.|+|+.+    .++||||++..++..+.+..+.-.....    .. ..+ ..  +.+. ..+.+.+.+ +|..+.+.  
T Consensus       202 i~v~g~~~~~~~~~iiDSGTt~~~lP~~~~~~l~~~~~~~----~~-~~~~~~~~~~C~-~~p~i~f~f~~g~~~~i~~~  275 (334)
T 1j71_A          202 INFDGTSVSTNADVVLDSGTTITYFSQSTADKFARIVGAT----WD-SRNEIYRLPSCD-LSGDAVFNFDQGVKITVPLS  275 (334)
T ss_dssp             EEETTEEEEEEEEEEECTTCSSEEECHHHHHHHHHHHTCE----EE-TTTTEEECSSSC-CCSEEEEEESTTCEEEEEGG
T ss_pred             EEECCEeccCCccEEEeCCCCcEecCHHHHHHHHHHcCCc----cc-CCCceEEEEcCC-CCCceEEEEcCCcEEEECHH
Confidence            36777543    5899999999999999887753221100    00 111 10  1111 123444555 34433321  


Q ss_pred             -----------EE--EecCCCCcEEecHHHHhhcCCeEeeccceEEEEE
Q 036248          263 -----------FH--ILDFSRADAVLGVQWLEKLGKIITDHKALTMEFT  298 (301)
Q Consensus       263 -----------~~--v~~~~~~d~ILG~dwL~~~~~i~id~~~~~~~~~  298 (301)
                                 +.  +.+ . -..|||..||+.+- +..|+.+++|.|.
T Consensus       276 ~y~~~~~~~~~C~~~i~~-~-~~~iLG~~fl~~~y-~vfD~~~~~igfA  321 (334)
T 1j71_A          276 ELILKDSDSSICYFGISR-N-DANILGDNFLRRAY-IVYDLDDKTISLA  321 (334)
T ss_dssp             GGEEECSSSSCEEESEEE-C-TTCEECHHHHTTEE-EEEETTTTEEEEE
T ss_pred             HheeecCCCCeeEEEEeE-C-CCcEEChHhhccEE-EEEECCCCEEEEE
Confidence                       11  111 1 25799999999999 4899999999985

>1oew_A Endothiapepsin; hydrolase, aspartic proteinase mechanism, atomic resolution, succinimide, anisotropic refinement; HET: SUI; 0.9A {Cryphonectria parasitica} SCOP: b.50.1.2 PDB: 1gkt_A* 1gvt_A* 1gvv_A* 1gvw_A* 1gvx_A* 1gvu_A* 1oex_A* 2jji_A* 2jjj_A* 2vs2_A* 3uri_A* 3urj_A* 3url_A* 3pww_A* 1e80_E* 1e81_E* 1e82_E* 1e5o_E* 1eed_P* 1epl_E* ...

Probab=92.79  E-value=0.44  Score=41.22  Aligned_cols=102  Identities=13%  Similarity=0.129  Sum_probs=60.4

Q ss_pred             EEcCE-----eEEEEEcCCCCccccCHHHHHHcCcceecccceEEEEecCce-EeecceeeeEEEEEeceeEEEe-----
Q 036248          194 KINNK-----PLSVLIDTGSTHNYLHPRLAHFLHLAIEKTMSFLVAVGNGER-IRSEGHCSKVKFEMQGVGFEAD-----  262 (301)
Q Consensus       194 ~v~~~-----~v~~liDsGAs~~~i~~~~~~~~~~~~~~~~~~~v~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~-----  262 (301)
                      .|+|+     ...++||||.+..++..+.++.+.-....   ......+|.. +.+....+.+.+.++|..+.+.     
T Consensus       202 ~v~~~~~~~~~~~aiiDSGTt~~~lP~~~~~~l~~~i~~---a~~~~~~g~~~~~C~~~~P~i~f~fgg~~~~ip~~~~~  278 (329)
T 1oew_A          202 AVGSGTFKSTSIDGIADTGTTLLYLPATVVSAYWAQVSG---AKSSSSVGGYVFPCSATLPSFTFGVGSARIVIPGDYID  278 (329)
T ss_dssp             EETTSCCEEEEEEEEECTTCCSEEECHHHHHHHHTTSTT---CEEETTTTEEEEETTCCCCCEEEEETTEEEEECHHHHE
T ss_pred             EECCeeccCCCceEEEeCCCCCEECCHHHHHHHHHhCCC---cEEcCCCCEEEEECCCCCCcEEEEECCEEEEECHHHee
Confidence            55653     45799999999999999988776322110   0000011111 2222222445666665554321     


Q ss_pred             ----------EE--EecCC-CCcEEecHHHHhhcCCeEeec-cceEEEEEe
Q 036248          263 ----------FH--ILDFS-RADAVLGVQWLEKLGKIITDH-KALTMEFTY  299 (301)
Q Consensus       263 ----------~~--v~~~~-~~d~ILG~dwL~~~~~i~id~-~~~~~~~~~  299 (301)
                                +.  +.+.. .-..|||..||+.+- +..|+ .+++|.|..
T Consensus       279 ~~~~~~~~~~C~~~i~~~~~~~~~iLG~~fl~~~y-~vfD~~~~~riGfA~  328 (329)
T 1oew_A          279 FGPISTGSSSCFGGIQSSAGIGINIFGDVALKAAF-VVFNGATTPTLGFAS  328 (329)
T ss_dssp             EEESSTTCSEEEESEEESTTTSSEEECHHHHTTEE-EEEECSSSCEEEEEE
T ss_pred             eeecCCCCCeEEEEEEeCCCCCceEEChHHhcCEE-EEEECCCCceEEEec
Confidence                      11  11122 246899999999999 48999 999999864

>3pvk_A Candidapepsin-2; hydrolase; 1.27A {Candida albicans} SCOP: b.50.1.2 PDB: 1eag_A 3q70_A* 1zap_A* 2qzw_A 2h6t_A* 2h6s_A*

Probab=92.66  E-value=0.48  Score=41.06  Aligned_cols=98  Identities=21%  Similarity=0.344  Sum_probs=55.5

Q ss_pred             EEcCEe-----EEEEEcCCCCccccCHHHHHHcCcceecccceEEEEecCc---eEeecceeeeEEEEEe-ceeEEEe--
Q 036248          194 KINNKP-----LSVLIDTGSTHNYLHPRLAHFLHLAIEKTMSFLVAVGNGE---RIRSEGHCSKVKFEMQ-GVGFEAD--  262 (301)
Q Consensus       194 ~v~~~~-----v~~liDsGAs~~~i~~~~~~~~~~~~~~~~~~~v~~~~g~---~~~~~~~~~~~~~~~~-~~~~~~~--  262 (301)
                      .|+|+.     ..++||||.+..++..+.+..+.-.....   ......|.   .+.+. ..+.+.+.++ |..+.+.  
T Consensus       202 ~v~g~~~~~~~~~~iiDSGtt~~~lP~~~~~~i~~~~~~~---~~~~~~~~~~~~~~C~-~~p~i~f~f~~g~~~~vp~~  277 (342)
T 3pvk_A          202 EVSGKTINTDNVDVLLDSGTTITYLQQDLADQIIKAFNGK---LTQDSNGNSFYEVDCN-LSGDVVFNFSKNAKISVPAS  277 (342)
T ss_dssp             EETTEEEEEEEEEEEECTTCSSEEECHHHHHHHHHHTTCE---EEECTTSCEEEEECSC-CCSEEEEEESTTCEEEEEGG
T ss_pred             EECCEEecCCCceEEEeCCCCCeecCHHHHHHHHHHcCCe---ecccCCCceEEEEecC-CCCceEEEECCCCEEEEcHH
Confidence            567754     46999999999999999877753221100   00000010   01111 1133444443 3322221  


Q ss_pred             ------------------EEEecCCCCcEEecHHHHhhcCCeEeeccceEEEEE
Q 036248          263 ------------------FHILDFSRADAVLGVQWLEKLGKIITDHKALTMEFT  298 (301)
Q Consensus       263 ------------------~~v~~~~~~d~ILG~dwL~~~~~i~id~~~~~~~~~  298 (301)
                                        +.+.+  .-..|||..||+.+- +..|+.+++|.|.
T Consensus       278 ~~~~~~~~~~g~~~~~C~~~i~~--~~~~ilG~~fl~~~y-~vfD~~~~~igfA  328 (342)
T 3pvk_A          278 EFAASLQGDDGQPYDKCQLLFDV--NDANILGDNFLRSAY-IVYDLDDNEISLA  328 (342)
T ss_dssp             GGEEC----------CEEESEEE--CTTCEECHHHHTTEE-EEEETTTTEEEEE
T ss_pred             HheeeccccCCCcCCeeEEEEee--CCCeEeCHHHHhcEE-EEEECCCCEEEEE
Confidence                              11111  124699999999999 5899999999985

>1htr_B Gastricsin; aspartyl protease; 1.62A {Homo sapiens} SCOP: b.50.1.2 PDB: 1avf_A

Probab=92.62  E-value=0.2  Score=43.40  Aligned_cols=99  Identities=16%  Similarity=0.181  Sum_probs=61.0

Q ss_pred             EEcCEe-------EEEEEcCCCCccccCHHHHHHcCcceecccceEEEEecCce-Eeecc--eeeeEEEEEeceeEEEe-
Q 036248          194 KINNKP-------LSVLIDTGSTHNYLHPRLAHFLHLAIEKTMSFLVAVGNGER-IRSEG--HCSKVKFEMQGVGFEAD-  262 (301)
Q Consensus       194 ~v~~~~-------v~~liDsGAs~~~i~~~~~~~~~~~~~~~~~~~v~~~~g~~-~~~~~--~~~~~~~~~~~~~~~~~-  262 (301)
                      .|+|+.       ..++||||++..++..+.+..+.-......     ..+|.. +.+..  ..+.+.+.++|..+.+. 
T Consensus       199 ~v~~~~~~~~~~~~~aiiDSGTt~~~lp~~~~~~l~~~~~~~~-----~~~g~~~~~C~~~~~~P~i~f~f~g~~~~i~~  273 (329)
T 1htr_B          199 LIGGQASGWCSEGCQAIVDTGTSLLTVPQQYMSALLQATGAQE-----DEYGQFLVNCNSIQNLPSLTFIINGVEFPLPP  273 (329)
T ss_dssp             EETTEECCTTTTCEEEEECTTCCSEEEEGGGHHHHHHHHTCEE-----CTTSCEEECGGGGGGSCCEEEEETTEEEEECH
T ss_pred             EECCceeeecCCCceEEEecCCccEECCHHHHHHHHHHhCCee-----cCCCeEEEeCCCcccCCcEEEEECCEEEEECH
Confidence            667654       469999999999999988777632211000     012211 12221  23456667776655432 


Q ss_pred             ----------EE--EecC-----CCC-cEEecHHHHhhcCCeEeeccceEEEEE
Q 036248          263 ----------FH--ILDF-----SRA-DAVLGVQWLEKLGKIITDHKALTMEFT  298 (301)
Q Consensus       263 ----------~~--v~~~-----~~~-d~ILG~dwL~~~~~i~id~~~~~~~~~  298 (301)
                                +.  +.+.     .+- ..|||..||+.+- +..|+.+++|.|.
T Consensus       274 ~~y~~~~~g~C~~~~~~~~~~~~~~~~~~iLG~~fl~~~y-vvfD~~~~~igfa  326 (329)
T 1htr_B          274 SSYILSNNGYCTVGVEPTYLSSQNGQPLWILGDVFLRSYY-SVYDLGNNRVGFA  326 (329)
T ss_dssp             HHHEEECSSCEEESEEEECCCCTTSSCEEEECHHHHTTEE-EEEETTTTEEEEE
T ss_pred             HHhcccCCCEEEEEEEECCCCCCCCCceEEEChHHhccEE-EEEECCCCEEEEE
Confidence                      11  2221     122 5899999999999 4899999999885

>1bxo_A Protein (penicillopepsin); hydrolase, phosphonate inhibitors, macrocycle; HET: MAN PP7; 0.95A {Penicillium janthinellum} SCOP: b.50.1.2 PDB: 1apu_E* 1apv_E* 1apw_E* 1apt_E* 1bxq_A* 1ppk_E* 1ppl_E* 1ppm_E* 2wea_A* 2web_A* 2wec_A* 2wed_A* 3app_A

Probab=92.47  E-value=0.49  Score=40.76  Aligned_cols=102  Identities=14%  Similarity=0.104  Sum_probs=61.1

Q ss_pred             EEcC---EeEEEEEcCCCCccccCHHHHHHcCcceecccceEEEEecCce-EeecceeeeEEEEEeceeEEEe-------
Q 036248          194 KINN---KPLSVLIDTGSTHNYLHPRLAHFLHLAIEKTMSFLVAVGNGER-IRSEGHCSKVKFEMQGVGFEAD-------  262 (301)
Q Consensus       194 ~v~~---~~v~~liDsGAs~~~i~~~~~~~~~~~~~~~~~~~v~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~-------  262 (301)
                      .|+|   ....++||||.+..++..+.+..+.-....   ......+|.. +.+....+.+.+.++|..+.+.       
T Consensus       199 ~v~~~~~~~~~aiiDSGTs~~~lP~~~~~~l~~~i~~---a~~~~~~g~~~~~C~~~~P~i~f~fgg~~~~l~~~~~~~~  275 (323)
T 1bxo_A          199 TAGSQSGDGFSGIADTGTTLLLLDDSVVSQYYSQVSG---AQQDSNAGGYVFDCSTNLPDFSVSISGYTATVPGSLINYG  275 (323)
T ss_dssp             EETTEEEEEEEEEECTTCSSEEECHHHHHHHHTTSTT---CEEETTTTEEEECTTCCCCCEEEEETTEEEEECHHHHEEE
T ss_pred             EECCccCCCceEEEeCCCCceeCCHHHHHHHHHhCCC---ceEcCcCCEEEEECCCCCceEEEEECCEEEEECHHHeEEe
Confidence            4555   345799999999999999988776332210   0000011211 1222223456666666555431       


Q ss_pred             -------EE--EecCC-CCcEEecHHHHhhcCCeEeeccceEEEEEe
Q 036248          263 -------FH--ILDFS-RADAVLGVQWLEKLGKIITDHKALTMEFTY  299 (301)
Q Consensus       263 -------~~--v~~~~-~~d~ILG~dwL~~~~~i~id~~~~~~~~~~  299 (301)
                             +.  +.+.. .-..|||..||+.+-. ..|+.+++|.|..
T Consensus       276 ~~~~~~~C~~~i~~~~~~~~~ILG~~fl~~~y~-vfD~~~~riGfA~  321 (323)
T 1bxo_A          276 PSGDGSTCLGGIQSNSGIGFSIFGDIFLKSQYV-VFDSDGPQLGFAP  321 (323)
T ss_dssp             ECSSSSCEEESEEECTTCSSEEECHHHHTTEEE-EEETTTTEEEEEE
T ss_pred             ccCCCCeEEEEEECCCCCCcEEEChHHHcCEEE-EEECCCCEEEEec
Confidence                   11  11221 2458999999999994 8999999998853

>1ibq_A Aspergillopepsin; aspartic proteinase, hydrolase; HET: MAN; 2.14A {Aspergillus phoenicis} SCOP: b.50.1.2

Probab=92.47  E-value=0.23  Score=42.89  Aligned_cols=101  Identities=15%  Similarity=0.119  Sum_probs=59.8

Q ss_pred             EEcCE-----eEEEEEcCCCCccccCHHHHHHcCccee-cccceEEEEecCc-eEeecceeeeEEEEEeceeEEEe----
Q 036248          194 KINNK-----PLSVLIDTGSTHNYLHPRLAHFLHLAIE-KTMSFLVAVGNGE-RIRSEGHCSKVKFEMQGVGFEAD----  262 (301)
Q Consensus       194 ~v~~~-----~v~~liDsGAs~~~i~~~~~~~~~~~~~-~~~~~~v~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~----  262 (301)
                      .|+|+     ...++||||++..++..+.+..+.-... ....    ..+|. .+.+....+.+.+.++|..+.+.    
T Consensus       198 ~v~~~~~~~~~~~aiiDSGTt~~~lP~~~~~~i~~~i~~a~~~----~~~g~~~~~C~~~~P~i~f~fgg~~~~i~~~~~  273 (325)
T 1ibq_A          198 SIGDGSSSSSGFSAIADTGTTLILLDDEIVSAYYEQVSGAQES----YEAGGYVFSCSTDLPDFTVVIGDYKAVVPGKYI  273 (325)
T ss_dssp             EETTSCCBSCCEEEEECTTCCSEEECHHHHHHHHTTSTTCBCC----SSSSSCEEETTCCCCCEEEEETTEEEEECHHHH
T ss_pred             EECCeeccCCCceEEEeCCCCcEeCCHHHHHHHHHhCCCceEc----CcCCeEEEEcCCCCCcEEEEECCEEEEECHHHh
Confidence            55553     4579999999999999998887632221 0000    00111 12222222345555555544321    


Q ss_pred             -----------EE--EecCC-CCcEEecHHHHhhcCCeEeeccceEEEEEe
Q 036248          263 -----------FH--ILDFS-RADAVLGVQWLEKLGKIITDHKALTMEFTY  299 (301)
Q Consensus       263 -----------~~--v~~~~-~~d~ILG~dwL~~~~~i~id~~~~~~~~~~  299 (301)
                                 +.  +.+.. .-..|||..||+.+-. ..|+.+++|.|..
T Consensus       274 ~~~~~~~~~~~C~~~i~~~~~~~~~iLG~~fl~~~y~-vfD~~~~~igfA~  323 (325)
T 1ibq_A          274 NYAPVSTGSSTCYGGIQSNSGLGLSILGDVFLKSQYV-VFNSEGPKLGFAA  323 (325)
T ss_dssp             EEEESSTTCSEEEESEEECTTTCSEEECHHHHTTEEE-EEETTTTEEEEEE
T ss_pred             cccccCCCCCeEEEEEEcCCCCCceEEChHHhcCEEE-EEECCCCEEEeee
Confidence                       11  11222 2458999999999994 8999999998853

>1miq_A Plasmepsin; aspartic proteinase zymogen, domain opening, hydrolase; 2.50A {Plasmodium vivax} SCOP: b.50.1.2 PDB: 1ls5_A*

Probab=92.43  E-value=0.64  Score=41.02  Aligned_cols=101  Identities=11%  Similarity=0.161  Sum_probs=60.1

Q ss_pred             EEEcCE---eEEEEEcCCCCccccCHHHHHHcCcceecccceEEEEecCce-Eeecc-eeeeEEEEEeceeEEEe-----
Q 036248          193 AKINNK---PLSVLIDTGSTHNYLHPRLAHFLHLAIEKTMSFLVAVGNGER-IRSEG-HCSKVKFEMQGVGFEAD-----  262 (301)
Q Consensus       193 ~~v~~~---~v~~liDsGAs~~~i~~~~~~~~~~~~~~~~~~~v~~~~g~~-~~~~~-~~~~~~~~~~~~~~~~~-----  262 (301)
                      +.|+|+   ...++||||.+..++..+.+..+.-.....    ....+|.. +.+.. ..+.+.+.++|..+.+.     
T Consensus       247 i~v~g~~~~~~~aiiDSGTs~~~lP~~~~~~l~~~~~~~----~~~~~g~~~~~C~~~~~P~i~f~f~g~~~~l~~~~yi  322 (375)
T 1miq_A          247 VHFGKQTMEKANVIVDSGTTTITAPSEFLNKFFANLNVI----KVPFLPFYVTTCDNKEMPTLEFKSANNTYTLEPEYYM  322 (375)
T ss_dssp             EEETTEEEEEEEEEECTTBSSEEECHHHHHHHHHHHTCE----ECTTSSCEEEETTCTTCCCEEEECSSCEEEECGGGSE
T ss_pred             EEECCEEcccceEEecCCCccEEcCHHHHHHHHHHhCCc----ccCCCCeEEEECCCCCCCcEEEEECCEEEEECHHHhE
Confidence            667775   457999999999999999887653221100    00011111 11111 12345555555444321     


Q ss_pred             ----------E--EEecCC--CCcEEecHHHHhhcCCeEeeccceEEEEE
Q 036248          263 ----------F--HILDFS--RADAVLGVQWLEKLGKIITDHKALTMEFT  298 (301)
Q Consensus       263 ----------~--~v~~~~--~~d~ILG~dwL~~~~~i~id~~~~~~~~~  298 (301)
                                +  .+.+..  .-..|||..||+.+- +..|+.+++|.|.
T Consensus       323 ~~~~~~g~~~C~~~~~~~~~~~~~~ILG~~fl~~~y-vvfD~~~~riGfA  371 (375)
T 1miq_A          323 NPILEVDDTLCMITMLPVDIDSNTFILGDPFMRKYF-TVFDYDKESVGFA  371 (375)
T ss_dssp             EESSSSSCSEEEESEEECCSSSSEEEECHHHHHHEE-EEEETTTTEEEEE
T ss_pred             eeccCCCCCeEEEEEEECCCCCCcEEECHHHhccEE-EEEECCCCEEEEE
Confidence                      1  112222  246899999999999 4899999999985

>2bju_A Plasmepsin II; aspartic proteinase, drug design, malaria, aspartyl protease, glycoprotein, hydrolase, signal, zymogen; HET: IH4; 1.56A {Plasmodium falciparum} SCOP: b.50.1.2 PDB: 1pfz_A 1xdh_A* 1lf3_A 1w6h_A* 1w6i_A* 1lf4_A* 1lf2_A* 1lee_A* 1m43_A* 2igx_A* 1sme_A* 1me6_A* 1xe6_A* 1xe5_A* 2igy_A* 2r9b_A 3f9q_A 3qrv_A 3qs1_A* 2anl_A* ...

Probab=92.33  E-value=0.42  Score=43.41  Aligned_cols=100  Identities=11%  Similarity=0.157  Sum_probs=62.9

Q ss_pred             EEEcCE---eEEEEEcCCCCccccCHHHHHHcCcceecccceEEEEecC-c-eEeecc-eeeeEEEEEeceeEEEe----
Q 036248          193 AKINNK---PLSVLIDTGSTHNYLHPRLAHFLHLAIEKTMSFLVAVGNG-E-RIRSEG-HCSKVKFEMQGVGFEAD----  262 (301)
Q Consensus       193 ~~v~~~---~v~~liDsGAs~~~i~~~~~~~~~~~~~~~~~~~v~~~~g-~-~~~~~~-~~~~~~~~~~~~~~~~~----  262 (301)
                      +.|+|.   ...++||||++..++..+.+..+.-.....     ...+| . .+.+.. ..+.+.+.++|..+.+.    
T Consensus       323 I~Vgg~~~~~~~aIiDSGTsl~~lP~~~~~~l~~~i~~~-----~~~~g~~~~v~C~~~~~P~itf~fgg~~~~l~~~~y  397 (453)
T 2bju_A          323 AHVGNIMLEKANCIVDSGTSAITVPTDFLNKMLQNLDVI-----KVPFLPFYVTLCNNSKLPTFEFTSENGKYTLEPEYY  397 (453)
T ss_dssp             EEETTEEEEEEEEEECTTCCSEEECHHHHHHHTTTSSCE-----ECTTSSCEEEETTCTTCCCEEEECSSCEEEECHHHH
T ss_pred             EEECcEEeccccEEEcCCCCeEecCHHHHHHHHHHhCCc-----ccCCCceEEEecCCCCCCcEEEEECCEEEEECHHHh
Confidence            445662   257999999999999999998875433210     01122 1 122221 23456677776655431    


Q ss_pred             -----------EE--EecCC--CCcEEecHHHHhhcCCeEeeccceEEEEE
Q 036248          263 -----------FH--ILDFS--RADAVLGVQWLEKLGKIITDHKALTMEFT  298 (301)
Q Consensus       263 -----------~~--v~~~~--~~d~ILG~dwL~~~~~i~id~~~~~~~~~  298 (301)
                                 |.  +.+..  .-..|||..||+.+-. ..|..+++|.|.
T Consensus       398 i~~~~~~g~~~C~~~~~~~~~~~~~~ILGd~Flr~~yv-VFD~~n~rIGfA  447 (453)
T 2bju_A          398 LQHIEDVGPGLCMLNIIGLDFPVPTFILGDPFMRKYFT-VFDYDNHSVGIA  447 (453)
T ss_dssp             EEECTTTSTTEEEECEEECCCSSCEEEECHHHHHHEEE-EEETTTTEEEEE
T ss_pred             EeecccCCCceEEEEEEeCCCCCCCEEECHHHhhcEEE-EEECCCCEEEEE
Confidence                       11  22222  2368999999999994 899999999985

>1mpp_A Pepsin; hydrolase(acid proteinase); 2.00A {Rhizomucor pusillus} SCOP: b.50.1.2 PDB: 2asi_A* 2rmp_A*

Probab=92.32  E-value=0.24  Score=43.42  Aligned_cols=101  Identities=13%  Similarity=0.122  Sum_probs=58.8

Q ss_pred             EEcCEeE------EEE-EcCCCCccccCHHHHHHcCcceecccceEEEEecCce-Eeecc--ee-eeEEEEE--e-----
Q 036248          194 KINNKPL------SVL-IDTGSTHNYLHPRLAHFLHLAIEKTMSFLVAVGNGER-IRSEG--HC-SKVKFEM--Q-----  255 (301)
Q Consensus       194 ~v~~~~v------~~l-iDsGAs~~~i~~~~~~~~~~~~~~~~~~~v~~~~g~~-~~~~~--~~-~~~~~~~--~-----  255 (301)
                      .|+|+.+      .++ ||||++..++..+.+..+.-.....  .  ...+|.. +.+..  .. +.+.+.+  +     
T Consensus       219 ~v~~~~~~~~~~~~ai~iDSGTt~~~lP~~~~~~l~~~~~~~--~--~~~~g~~~~~C~~~~~~~p~i~f~f~~g~~~~~  294 (361)
T 1mpp_A          219 KIDGSDAVSFDGAQAFTIDTGTNFFIAPSSFAEKVVKAALPD--A--TESQQGYTVPCSKYQDSKTTFSLVLQKSGSSSD  294 (361)
T ss_dssp             EETTEEEEEEEEEEEEEEETTCCSEEEEHHHHHHHHHHHCTT--C--EEETTEEEEEHHHHTTCCCEEEEEEECTTCSSC
T ss_pred             EECCeeeccCCCCEEEEECCCCCceeCCHHHHHHHHHHhCCc--c--cCCCCcEEEECCCcccCCCcEEEEEEcCCcCCC
Confidence            5677543      589 9999999999998887653221110  0  0111211 11111  12 3455555  4     


Q ss_pred             ceeEEEe--------------E--EEecCCCCcEEecHHHHhhcCCeEeeccceEEEEEe
Q 036248          256 GVGFEAD--------------F--HILDFSRADAVLGVQWLEKLGKIITDHKALTMEFTY  299 (301)
Q Consensus       256 ~~~~~~~--------------~--~v~~~~~~d~ILG~dwL~~~~~i~id~~~~~~~~~~  299 (301)
                      +..+.+.              +  .+.+..+-..|||..||+.+- +..|+.+++|.|..
T Consensus       295 g~~~~i~~~~y~~~~~~~~~~C~~~i~~~~~~~~iLG~~fl~~~y-vvfD~~~~~igfa~  353 (361)
T 1mpp_A          295 TIDVSVPISKMLLPVDKSGETCMFIVLPDGGNQFIVGNLFLRFFV-NVYDFGKNRIGFAP  353 (361)
T ss_dssp             EEEEEEEGGGGEEECSSSSCEEEESEEEESSSCCEEEHHHHTTEE-EEEETTTTEEEEEE
T ss_pred             CeEEEECHHHhEEecCCCCCeeEEEEEeCCCCCEEEChHHhccEE-EEEECCCCEEEEEE
Confidence            4433321              1  112222346899999999999 48999999999853

>3aup_A SBG7S, BG, basic 7S globulin; pepsin-like fold, plant protein; 1.91A {Glycine max}

Probab=92.28  E-value=0.39  Score=42.86  Aligned_cols=95  Identities=19%  Similarity=0.223  Sum_probs=52.2

Q ss_pred             EEEcCCCCccccCHHHHHHcCcceecc-cce-EEE-Eec-CceEeecc--eeeeEEEEEece---eEEEe----------
Q 036248          202 VLIDTGSTHNYLHPRLAHFLHLAIEKT-MSF-LVA-VGN-GERIRSEG--HCSKVKFEMQGV---GFEAD----------  262 (301)
Q Consensus       202 ~liDsGAs~~~i~~~~~~~~~~~~~~~-~~~-~v~-~~~-g~~~~~~~--~~~~~~~~~~~~---~~~~~----------  262 (301)
                      ++||||.+..++..+.+..+.-..... ... .+. ... +-...+..  ..+.+.+.++|.   .+.+.          
T Consensus       262 aiiDSGTt~~~lp~~~~~~l~~~i~~~~~~~~~~~~~~~~~~c~~c~~~~~~P~i~f~f~g~~~~~~~l~~~~y~~~~~~  341 (403)
T 3aup_A          262 TMISTSTPHMVLQQSVYQAFTQVFAQQLPKQAQVKSVAPFGLCFNSNKINAYPSVDLVMDKPNGPVWRISGEDLMVQAQP  341 (403)
T ss_dssp             EEECSSCSSEEECHHHHHHHHHHHHHTSCGGGEECCCTTCSCEECGGGCCCCCCEEEEESSTTCCEEEECHHHHEEEC--
T ss_pred             EEEECCCccEEeCHHHHHHHHHHHHHHhccccccCCCCCCCceEECCCcCcCCcEEEEEcCCCceEEEEcccceEEEcCC
Confidence            999999999999998877653222100 000 000 000 00111111  123455555442   33211          


Q ss_pred             ---E-EEecCC---CCcEEecHHHHhhcCCeEeeccceEEEE
Q 036248          263 ---F-HILDFS---RADAVLGVQWLEKLGKIITDHKALTMEF  297 (301)
Q Consensus       263 ---~-~v~~~~---~~d~ILG~dwL~~~~~i~id~~~~~~~~  297 (301)
                         + .+++..   .-..|||..||+.+- +..|..+++|.|
T Consensus       342 ~~~C~~~~~~~~~~~~~~ILG~~fl~~~y-vvfD~~~~rIGf  382 (403)
T 3aup_A          342 GVTCLGVMNGGMQPRAEITLGARQLEENL-VVFDLARSRVGF  382 (403)
T ss_dssp             -CEEECEEECCSCCSSSEEECHHHHTTSC-EEEETTTTEEEE
T ss_pred             CeEEEEEEcCCCCCCCcEEEChHHhcCeE-EEEECCCCEEEE
Confidence               1 122222   135899999999999 589999999998

>3c9x_A Trichoderma reesei aspartic protease; aspartic proteinase, aspartyl protease, hydrolase; 1.70A {Trichoderma reesei} PDB: 3c9y_A* 3emy_A*

Probab=92.24  E-value=0.4  Score=41.48  Aligned_cols=97  Identities=10%  Similarity=0.071  Sum_probs=57.1

Q ss_pred             eEEEEEcCCCCccccCHHHHHHcCcceecccceEEEEecCce-EeecceeeeEEEEEeceeEEEe---------------
Q 036248          199 PLSVLIDTGSTHNYLHPRLAHFLHLAIEKTMSFLVAVGNGER-IRSEGHCSKVKFEMQGVGFEAD---------------  262 (301)
Q Consensus       199 ~v~~liDsGAs~~~i~~~~~~~~~~~~~~~~~~~v~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~---------------  262 (301)
                      ...++||||.+..++..+.+..+.-....   ......+|.. +.+....+.+.+.++|..+.+.               
T Consensus       213 ~~~aiiDSGTt~~~lp~~~~~~i~~~i~~---a~~~~~~~~~~~~C~~~~P~i~f~f~g~~~~ip~~~~~~~~~~~~~~~  289 (329)
T 3c9x_A          213 SIDGIADTGTTLLLLDDNVVDAYYANVQS---AQYDNQQEGVVFDCDEDLPSFSFGVGSSTITIPGDLLNLTPLEEGSST  289 (329)
T ss_dssp             CEEEEECTTCCSEEECHHHHHHHHTTCTT---CEEETTTTEEEEETTCCCCCEEEEETTEEEEECGGGGEEEESSTTCSE
T ss_pred             CceEEEECCCCcEeCCHHHHHHHHHhCCC---cEEcCCCCEEEEECCCCCCcEEEEECCEEEEECHHHeeeeccCCCCCe
Confidence            45799999999999999988776322210   0000001111 1222222345555555444321               


Q ss_pred             EE--EecCC-CCcEEecHHHHhhcCCeEeeccceEEEEEe
Q 036248          263 FH--ILDFS-RADAVLGVQWLEKLGKIITDHKALTMEFTY  299 (301)
Q Consensus       263 ~~--v~~~~-~~d~ILG~dwL~~~~~i~id~~~~~~~~~~  299 (301)
                      ++  +.+.. .-..|||..||+.+- +..|..+++|.|..
T Consensus       290 C~~~i~~~~~~~~~ILG~~fl~~~y-~vfD~~~~riGfA~  328 (329)
T 3c9x_A          290 CFGGLQSSSGIGINIFGDVALKAAL-VVFDLGNERLGWAQ  328 (329)
T ss_dssp             EEESEEECTTTTSEEECHHHHTTEE-EEEETTTTEEEEEE
T ss_pred             EEEEEEcCCCCCcEEEChHHhccEE-EEEECCCCEEeEec
Confidence            11  12222 245899999999999 48999999999864

>2qzx_A Candidapepsin-5; aspartic proteinase, aspartyl protease, CL PAIR of basic residues, glycoprotein, protease, secreted; HET: STA; 2.50A {Candida albicans}

Probab=92.19  E-value=0.19  Score=43.81  Aligned_cols=103  Identities=14%  Similarity=0.296  Sum_probs=58.7

Q ss_pred             EEEcCEeE----EEEEcCCCCccccCHHHHHHcCcceecccceEEEEecC-c-eEeecceeeeEEEEE-eceeEEEe---
Q 036248          193 AKINNKPL----SVLIDTGSTHNYLHPRLAHFLHLAIEKTMSFLVAVGNG-E-RIRSEGHCSKVKFEM-QGVGFEAD---  262 (301)
Q Consensus       193 ~~v~~~~v----~~liDsGAs~~~i~~~~~~~~~~~~~~~~~~~v~~~~g-~-~~~~~~~~~~~~~~~-~~~~~~~~---  262 (301)
                      +.|+|+.+    .++||||++..++..+.+..+.-.....  ....-..+ . .+.+. ..+.+.+.+ +|..+.+.   
T Consensus       202 i~v~g~~~~~~~~aiiDSGTt~~~lP~~~~~~l~~~~~~~--~~~~~~~~~~~~~~C~-~~p~i~f~f~~g~~~~i~~~~  278 (342)
T 2qzx_A          202 VNVRGRNVDANTNVLLDSGTTISYFTRSIVRNILYAIGAQ--MKFDSAGNKVYVADCK-TSGTIDFQFGNNLKISVPVSE  278 (342)
T ss_dssp             EEETTEEEEEEEEEEECTTCSSEEECHHHHHHHHHHHTCE--EEECTTSCEEEEECTT-CCCEEEEEETTTEEEEEEGGG
T ss_pred             EEECCEecCCCcCEEEeCCCCCEEcCHHHHHHHHHHhCCe--eeeccCCCcEEEEECC-CCCcEEEEECCCcEEEEcHHH
Confidence            36777644    5899999999999999887763221100  00000001 0 11111 124455565 45444331   


Q ss_pred             EEEe--------------cC-CCCcEEecHHHHhhcCCeEeeccceEEEEEe
Q 036248          263 FHIL--------------DF-SRADAVLGVQWLEKLGKIITDHKALTMEFTY  299 (301)
Q Consensus       263 ~~v~--------------~~-~~~d~ILG~dwL~~~~~i~id~~~~~~~~~~  299 (301)
                      +++-              .. ..-..|||..||+.+- +..|+.+++|.|..
T Consensus       279 ~~~~~~~~~~~~~~~C~~~i~~~~~~iLG~~fl~~~y-~vfD~~~~~igfA~  329 (342)
T 2qzx_A          279 FLFQTYYTSGKPFPKCEVRIRESEDNILGDNFLRSAY-VVYNLDDKKISMAP  329 (342)
T ss_dssp             GEECCBCTTSCBCSSEEESEEECSSCEECHHHHTTEE-EEEETTTTEEEEEE
T ss_pred             hcccccccCCCCCCccEEEEecCCCcEeChHhhhcEE-EEEECCCCEEEEEe
Confidence            1110              00 0125799999999999 58999999999853

>1izd_A Aspartic proteinase; sugar binding, acid protease, hydrolase; HET: MAN; 1.90A {Aspergillus oryzae} SCOP: b.50.1.2 PDB: 1ize_A*

Probab=91.58  E-value=0.69  Score=39.83  Aligned_cols=96  Identities=14%  Similarity=0.110  Sum_probs=58.5

Q ss_pred             eEEEEEcCCCCccccCHHHHHHcCcceecccceEEEEecCc-eEeecceeeeEEEEEeceeEEEe-------------EE
Q 036248          199 PLSVLIDTGSTHNYLHPRLAHFLHLAIEKTMSFLVAVGNGE-RIRSEGHCSKVKFEMQGVGFEAD-------------FH  264 (301)
Q Consensus       199 ~v~~liDsGAs~~~i~~~~~~~~~~~~~~~~~~~v~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~-------------~~  264 (301)
                      ...++||||.+..++..+.+..+.-....   ......+|. .+.+....+.+.+.++|..+.+.             +.
T Consensus       208 ~~~aiiDSGTs~~~lp~~~~~~i~~~i~g---a~~~~~~g~~~~~C~~~~P~i~f~fgg~~~~i~~~~~~~~~~~~~~C~  284 (323)
T 1izd_A          208 SITGIADTGTTLLLLDDSIVDAYYEQVNG---ASYDSSQGGYVFPSSASLPDFSVTIGDYTATVPGEYISFADVGNGQTF  284 (323)
T ss_dssp             CEEEEECTTCCSEEECHHHHHHHHTTSTT---CEEETTTTEEEEETTCCCCCEEEEETTEEEEECHHHHEEEECSTTEEE
T ss_pred             CceEEEeCCCcceeCCHHHHHHHHHhCCC---cEEcCcCCEEEEECCCCCceEEEEECCEEEecCHHHeEEecCCCCeEE
Confidence            45799999999999999988876322210   000001111 11222223456666666555431             11


Q ss_pred             --EecCC-CCcEEecHHHHhhcCCeEeeccceEEEEE
Q 036248          265 --ILDFS-RADAVLGVQWLEKLGKIITDHKALTMEFT  298 (301)
Q Consensus       265 --v~~~~-~~d~ILG~dwL~~~~~i~id~~~~~~~~~  298 (301)
                        +.+.. .-..|||..||+.+-. ..|+.+++|.|.
T Consensus       285 ~~i~~~~~~~~~IlG~~fl~~~y~-vfD~~~~riGfA  320 (323)
T 1izd_A          285 GGIQSNSGIGFSIFGDVFLKSQYV-VFDASGPRLGFA  320 (323)
T ss_dssp             ESEEECTTTSSEEECHHHHTTEEE-EEETTTTEEEEE
T ss_pred             EEEEcCCCCCcEEEChHHhcCEEE-EEECCCCEEEEe
Confidence              22222 2468999999999994 899999999885

>1t6e_X Xylanase inhibitor; two beta-barrel domain structure, hydrolase inhibitor; 1.70A {Triticum aestivum} SCOP: b.50.1.2 PDB: 1t6g_A 2b42_A 3hd8_A

Probab=90.37  E-value=0.89  Score=40.14  Aligned_cols=27  Identities=19%  Similarity=0.252  Sum_probs=24.0

Q ss_pred             cEEecHHHHhhcCCeEeeccceEEEEEe
Q 036248          272 DAVLGVQWLEKLGKIITDHKALTMEFTY  299 (301)
Q Consensus       272 d~ILG~dwL~~~~~i~id~~~~~~~~~~  299 (301)
                      -.|||..||+.+- +..|..+++|.|..
T Consensus       345 ~~ILGd~fl~~~y-vvfD~~~~riGfA~  371 (381)
T 1t6e_X          345 AVILGGAQMEDFV-LDFDMEKKRLGFSR  371 (381)
T ss_dssp             SEEECHHHHTTEE-EEEETTTTEEEEEE
T ss_pred             eEEEChHHhCCcE-EEEECCCCEEEEec
Confidence            4899999999999 58999999999853

>3lpj_A Beta-secretase 1; alzheimer'S, aspartyl protease, hydrolase; HET: TLA Z75; 1.79A {Homo sapiens} PDB: 3lpi_A* 3lpk_A* 3ohf_A* 3ohh_A* 3r2f_A* 3skf_A* 3skg_A* 4fse_A* 2hiz_A* 2p83_A* 2va7_A* 2va5_A* 2va6_A*

Probab=90.32  E-value=0.19  Score=45.71  Aligned_cols=27  Identities=19%  Similarity=0.365  Sum_probs=24.3

Q ss_pred             CcEEecHHHHhhcCCeEeeccceEEEEE
Q 036248          271 ADAVLGVQWLEKLGKIITDHKALTMEFT  298 (301)
Q Consensus       271 ~d~ILG~dwL~~~~~i~id~~~~~~~~~  298 (301)
                      -..|||..||+.+- +..|+.+++|.|.
T Consensus       391 ~~~ILG~~fl~~~y-vvfD~~~~rIGfA  417 (455)
T 3lpj_A          391 TGTVMGAVIMEGFY-VVFDRARKRIGFA  417 (455)
T ss_dssp             SCEEECHHHHTTEE-EEEETTTTEEEEE
T ss_pred             CcEEEChHHhCCeE-EEEECCCCEEEEE
Confidence            45899999999999 5899999999985

>3psg_A Pepsinogen; hydrolase(acid proteinase zymogen); 1.65A {Sus scrofa} SCOP: b.50.1.2 PDB: 2psg_A 4pep_A* 3pep_A* 1f34_A* 1psa_A* 1yx9_A 5pep_A 1flh_A 1qrp_E* 1psn_A* 1pso_E* 3utl_A

Probab=90.26  E-value=0.5  Score=41.65  Aligned_cols=93  Identities=16%  Similarity=0.251  Sum_probs=57.0

Q ss_pred             EEEEEcCCCCccccCHHHHHHcCcceecccceEEEEecCce-Eeecc--eeeeEEEEEeceeEEEe--------------
Q 036248          200 LSVLIDTGSTHNYLHPRLAHFLHLAIEKTMSFLVAVGNGER-IRSEG--HCSKVKFEMQGVGFEAD--------------  262 (301)
Q Consensus       200 v~~liDsGAs~~~i~~~~~~~~~~~~~~~~~~~v~~~~g~~-~~~~~--~~~~~~~~~~~~~~~~~--------------  262 (301)
                      ..++||||.+..++..+.+..+.-.....     ...+|.. +.+..  ..+.+.+.++|..+.+.              
T Consensus       254 ~~aiiDTGTs~~~lP~~~~~~i~~~i~a~-----~~~~g~~~v~C~~~~~lP~i~f~~~g~~~~l~~~~yi~~~~~~C~~  328 (370)
T 3psg_A          254 CQAIVDTGTSLLTGPTSAIANIQSDIGAS-----ENSDGEMVISCSSIDSLPDIVFTIDGVQYPLSPSAYILQDDDSCTS  328 (370)
T ss_dssp             EEEEECTTCCSEEEEHHHHHHHHHHTTCE-----ECTTCCEECCGGGGGGCCCEEEEETTEEEEECHHHHEEECSSCEEE
T ss_pred             ceEEEcCCCCcEECCHHHHHHHHHHhCCc-----ccCCCcEEEECCCcccCCcEEEEECCEEEEECHHHhcccCCCEEEE
Confidence            46999999999999988877763221100     0112211 12211  22456677777665432              


Q ss_pred             -EEEecCC--CC-cEEecHHHHhhcCCeEeeccceEEEEE
Q 036248          263 -FHILDFS--RA-DAVLGVQWLEKLGKIITDHKALTMEFT  298 (301)
Q Consensus       263 -~~v~~~~--~~-d~ILG~dwL~~~~~i~id~~~~~~~~~  298 (301)
                       |...+..  .- -.|||..||+.+-. ..|+.+++|.|.
T Consensus       329 ~~~~~~~~~~~~~~~ILG~~Fl~~~y~-vfD~~~~riGfA  367 (370)
T 3psg_A          329 GFEGMDVPTSSGELWILGDVFIRQYYT-VFDRANNKVGLA  367 (370)
T ss_dssp             SEEEECCCTTSCCEEEECHHHHTTEEE-EEETTTTEEEEE
T ss_pred             EEEeCCCCCCCCCcEEeChHHhcceEE-EEECCCCEEEEE
Confidence             1111111  12 38999999999995 899999999885

>3vf3_A Beta-secretase 1; structure-based drug design, hydrolase-hydrolase inhibitor C; HET: 0GS; 1.48A {Homo sapiens} PDB: 2f3e_A* 2f3f_A* 1ym2_A* 3dv1_A* 3dv5_A* 3k5c_A* 3k5f_A* 3k5g_A* 3pi5_A* 3qbh_A* 3duy_A* 3veu_A* 3vg1_A* 4d83_A* 4d88_A* 4d89_A* 4d8c_A* 3msk_A* 3k5d_A* 1ym4_A* ...

Probab=90.13  E-value=0.19  Score=44.85  Aligned_cols=27  Identities=19%  Similarity=0.365  Sum_probs=24.3

Q ss_pred             CcEEecHHHHhhcCCeEeeccceEEEEE
Q 036248          271 ADAVLGVQWLEKLGKIITDHKALTMEFT  298 (301)
Q Consensus       271 ~d~ILG~dwL~~~~~i~id~~~~~~~~~  298 (301)
                      -..|||..||+.+- +..|+.+++|.|.
T Consensus       345 ~~~ILG~~fl~~~y-vvfD~~~~rIGfA  371 (402)
T 3vf3_A          345 TGTVMGAVIMEGFY-VVFDRARKRIGFA  371 (402)
T ss_dssp             SCEEECHHHHTTEE-EEEEGGGTEEEEE
T ss_pred             CcEEEChHHhCCeE-EEEECCCCEEEEE
Confidence            45899999999999 5899999999985

>2jyl_A Capsid protein P24 (Ca); HIV-1, carboxy-terminal, dimerization domain, CTD, 3D- NMR, capsid protein (Ca), double mutant; NMR {Human immunodeficiency virus 1} PDB: 2k1c_A* 2l6e_A*

Probab=89.48  E-value=1  Score=31.88  Aligned_cols=67  Identities=10%  Similarity=0.184  Sum_probs=47.8

Q ss_pred             HHHhcCcc--cccHHHHHHHHHHHHHHhhc---CCHHHHHHHHHhcCCHHHHHhcccC-CCCcHHHHHHHHHH
Q 036248           37 ATLFKLTQ--TSSVEAYQSTFENICNRVTN---LHPDAILDCFISGLKPTIQNELAIH-KPSNLRDAIALAKL  103 (301)
Q Consensus        37 ~~l~~lkQ--~~sv~~Y~~~f~~L~~~~~~---~~e~~~~~~f~~GL~~~i~~~l~~~-~p~tl~~~~~~A~~  103 (301)
                      -.+..++|  .|+..+|++||-..++....   ..........++.-+++.+..++.. .-.+|++-+..+..
T Consensus        22 ~si~~IkQGpKEPf~dyVdR~~k~l~ae~~~~~vK~~mt~tL~~qNANpdCk~ilk~lg~~~tlee~~~acqg   94 (105)
T 2jyl_A           22 TSILDIRQGPKEPFRDYVDRFYKTLRAEQASQEVKNAATETLLVQNANPDCKTILKALGPGATLEEMMTACQG   94 (105)
T ss_dssp             CCGGGCCCCSSSCHHHHHHHHHHHHHHHCCCTTTTTSCHHHHHHHTSCHHHHHHHHHHCTTCCHHHHHHHHHH
T ss_pred             cchhhhhcCCCCcHHHHHHHHHHHHHHhhcchhhHHHhhhhhhHhhcCcchhhHHHccCCCCCHHHHHHHccc
Confidence            34678899  89999999999988776532   1222344556788899999888754 34688887766544

>3g1g_A GAG polyprotein, capsid protein; alpha-helical bundle, virion, viral protein, retrovirus; 2.01A {Rous sarcoma virus}

Probab=88.12  E-value=2  Score=28.86  Aligned_cols=66  Identities=15%  Similarity=0.197  Sum_probs=49.0

Q ss_pred             HhcCcc--cccHHHHHHHHHHHHHHhh--c-CCHHHHHHHHHhcCCHHHHHhcccC-CCCcH-HHHHHHHHHH
Q 036248           39 LFKLTQ--TSSVEAYQSTFENICNRVT--N-LHPDAILDCFISGLKPTIQNELAIH-KPSNL-RDAIALAKLI  104 (301)
Q Consensus        39 l~~lkQ--~~sv~~Y~~~f~~L~~~~~--~-~~e~~~~~~f~~GL~~~i~~~l~~~-~p~tl-~~~~~~A~~~  104 (301)
                      |..++|  .|+..+|+.||..-...-.  . ..+..+....++.=+++.|..++.- .-.++ +|++...+.-
T Consensus         3 ~tdI~QGPkEPF~dfVdRl~kal~~eq~~~~vK~~m~~tLlvQNANpdCk~Il~~~~~~~~~~~e~Ik~~l~~   75 (87)
T 3g1g_A            3 WADIMQGPSESFVDFANRLIKAVEGSDLPPSARAPVIIDCFRQKSQPDIQQLIRTAPSTLTTPGEIIKYVLDR   75 (87)
T ss_dssp             TTTCCCCTTCCHHHHHHHHHHHHHHSSSCGGGHHHHHHHHHHHHSCHHHHHHHHTSCTTCCSHHHHHHHHHHH
T ss_pred             ccccccCCCCcHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhcCHHHHHHHHhCCCCCCChHHHHHHHHHH
Confidence            567899  8999999999999776632  1 3555677788889999999988753 33344 8888776653

>3ds4_A HIV-1 capsid protein; HIV, mutant, polyprotein, complex(viral protein/peptide), mainly alpha; 1.12A {Human immunodeficiency virus 1} PDB: 3dph_A 1a43_A 2xt1_A 2buo_A 3lry_A 2kod_A 3ds1_A 3dtj_A 3ds0_A 3ds5_A 3ds2_A 3ds3_A 2jo0_A 2jyg_A 2xxm_A 2xv6_A 2ont_A 1aum_A 1a8o_A 4arg_B ...

Probab=87.98  E-value=1.7  Score=29.56  Aligned_cols=64  Identities=8%  Similarity=0.114  Sum_probs=45.6

Q ss_pred             HhcCcc--cccHHHHHHHHHHHHHHhhcC---CHHHHHHHHHhcCCHHHHHhccc-CCCCcHHHHHHHHH
Q 036248           39 LFKLTQ--TSSVEAYQSTFENICNRVTNL---HPDAILDCFISGLKPTIQNELAI-HKPSNLRDAIALAK  102 (301)
Q Consensus        39 l~~lkQ--~~sv~~Y~~~f~~L~~~~~~~---~e~~~~~~f~~GL~~~i~~~l~~-~~p~tl~~~~~~A~  102 (301)
                      |..++|  .|+..+|+.+|......-..-   .........++.-+++.+..++. ..-.+|++.+..+.
T Consensus         5 ~~~i~QGpkEpf~dfv~rl~k~l~~e~~~~~vK~~m~~tL~~qNAnp~Ck~il~~l~~~~~lee~~~aC~   74 (86)
T 3ds4_A            5 ILDIRQGPKEPFRDYVDRFYKTLRAEQASQEVKNWMTETLLVQNANPDCKTILKALGPGATSEEMMTACQ   74 (86)
T ss_dssp             GGGCCCCTTSCHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHTSCHHHHHHHHHHCTTCCHHHHHHHHT
T ss_pred             hhccccCCCCcHHHHHHHHHHHHHHhccchhHHHHHHHhHHHHhccHHHHHHHHccCCCCCHHHHHHHcc
Confidence            567899  899999999999987654321   22344556677779999887764 45567888776553

>2ewy_A Beta-secretase 2; BACE2, aspartic protease, hydrolase; HET: DBO; 3.10A {Homo sapiens}

Probab=87.87  E-value=0.63  Score=41.06  Aligned_cols=28  Identities=21%  Similarity=0.303  Sum_probs=24.6

Q ss_pred             CcEEecHHHHhhcCCeEeeccceEEEEEe
Q 036248          271 ADAVLGVQWLEKLGKIITDHKALTMEFTY  299 (301)
Q Consensus       271 ~d~ILG~dwL~~~~~i~id~~~~~~~~~~  299 (301)
                      -..|||..||+.+- +..|+.+++|.|..
T Consensus       326 ~~~ILG~~fl~~~y-vvfD~~~~rIGfA~  353 (383)
T 2ewy_A          326 NALVIGATVMEGFY-VIFDRAQKRVGFAA  353 (383)
T ss_dssp             SCEEECHHHHTTEE-EEEETTTTEEEEEE
T ss_pred             CcEEEChHHhCCee-EEEECCCCeEEEEe
Confidence            45899999999999 48999999999853

>2bju_A Plasmepsin II; aspartic proteinase, drug design, malaria, aspartyl protease, glycoprotein, hydrolase, signal, zymogen; HET: IH4; 1.56A {Plasmodium falciparum} SCOP: b.50.1.2 PDB: 1pfz_A 1xdh_A* 1lf3_A 1w6h_A* 1w6i_A* 1lf4_A* 1lf2_A* 1lee_A* 1m43_A* 2igx_A* 1sme_A* 1me6_A* 1xe6_A* 1xe5_A* 2igy_A* 2r9b_A 3f9q_A 3qrv_A 3qs1_A* 2anl_A* ...

Probab=87.60  E-value=1.8  Score=39.20  Aligned_cols=87  Identities=21%  Similarity=0.313  Sum_probs=52.3

Q ss_pred             EEEEEEc--CEeEEEEEcCCCCccccCHHHHH-----HcC-cceec-------ccceEEEEecCceEeecceeeeEEEEE
Q 036248          190 QLSAKIN--NKPLSVLIDTGSTHNYLHPRLAH-----FLH-LAIEK-------TMSFLVAVGNGERIRSEGHCSKVKFEM  254 (301)
Q Consensus       190 ~i~~~v~--~~~v~~liDsGAs~~~i~~~~~~-----~~~-~~~~~-------~~~~~v~~~~g~~~~~~~~~~~~~~~~  254 (301)
                      .+.+.|.  .+++.+++||||+...|...-+.     ..+ .....       ..+..+..++|. .  .+....=.+.+
T Consensus       141 ~~~I~IGTP~Q~~~vi~DTGSs~lWV~~~~C~~~~C~~~~~ydps~SsT~~~~~~~~~i~YgdGs-~--~G~~~~Dtv~i  217 (453)
T 2bju_A          141 YGDAEVGDNQQPFTFILDTGSANLWVPSVKCTTAGCLTKHLYDSSKSRTYEKDGTKVEMNYVSGT-V--SGFFSKDLVTV  217 (453)
T ss_dssp             EEEEEETTTTEEEEEEEETTCCCEEEEBTTCCSTTGGGSCCBCGGGCTTCEEEEEEEEEECSSSE-E--EEEEEEEEEEE
T ss_pred             EEEEEECCCCeEEEEEEECCCcceEEeccCCCccccCCCCcCCCccCCceeECCcEEEEEcCCCC-e--EEEEEEEEEEE
Confidence            5556676  78999999999999887543221     111 11111       124566667776 3  34434445677


Q ss_pred             eceeEEEeEEEecC----------CCCcEEecHHH
Q 036248          255 QGVGFEADFHILDF----------SRADAVLGVQW  279 (301)
Q Consensus       255 ~~~~~~~~~~v~~~----------~~~d~ILG~dw  279 (301)
                      ++......|.+...          ..+|.|||+-+
T Consensus       218 g~~~v~~~Fg~a~~~~~~g~~f~~~~~dGIlGLg~  252 (453)
T 2bju_A          218 GNLSLPYKFIEVIDTNGFEPTYTASTFDGILGLGW  252 (453)
T ss_dssp             TTEEEEEEEEEEEECGGGTTHHHHSSCCEEEECSC
T ss_pred             eCcEEEEEEEEEEEecccCccccccCCceeEeccC
Confidence            77766555555442          24799999854

>3qvc_A Histo-aspartic protease; HAP, plasmepsin, zymogen, hydrolase; 2.10A {Plasmodium falciparum} PDB: 3qvi_A* 3fns_A 3fnt_A* 3fnu_A*

Probab=87.46  E-value=1.6  Score=39.55  Aligned_cols=87  Identities=18%  Similarity=0.240  Sum_probs=52.4

Q ss_pred             EEEEEEc--CEeEEEEEcCCCCccccCHHHH-----HHcC-ccee-------cccceEEEEecCceEeecceeeeEEEEE
Q 036248          190 QLSAKIN--NKPLSVLIDTGSTHNYLHPRLA-----HFLH-LAIE-------KTMSFLVAVGNGERIRSEGHCSKVKFEM  254 (301)
Q Consensus       190 ~i~~~v~--~~~v~~liDsGAs~~~i~~~~~-----~~~~-~~~~-------~~~~~~v~~~~g~~~~~~~~~~~~~~~~  254 (301)
                      .+.+.|.  .+++.+++||||+...|...-+     ...+ ....       ...+..+..++|. .  .+....=.+.+
T Consensus       140 ~~~I~IGTPpQ~~~vi~DTGSs~lWV~s~~C~s~~C~~~~~ydps~SsT~~~~~~~f~i~YgdGs-~--~G~~~~Dtv~i  216 (451)
T 3qvc_A          140 FGEAKLGDNGQKFNFLFHTASSNVWVPSIKCTSESCESKNHYDSSKSKTYEKDDTPVKLTSKAGT-I--SGIFSKDLVTI  216 (451)
T ss_dssp             EEEEEETTTTEEEEEEEESSBCSEEEEBTTCCSGGGTTSCCBCGGGCTTCEEEEEEEEEECSSEE-E--EEEEEEEEEEE
T ss_pred             EEEEEECCCCcEEEEEEcCCCccEEEecCCCCccccCCCCCCCCCCCcccccCCCEEEEEECCCE-E--EEEEEEEEEEE
Confidence            4455666  6899999999999988865322     1111 1111       1134556666665 2  33333445677


Q ss_pred             eceeEEEeEEEecC----------CCCcEEecHHH
Q 036248          255 QGVGFEADFHILDF----------SRADAVLGVQW  279 (301)
Q Consensus       255 ~~~~~~~~~~v~~~----------~~~d~ILG~dw  279 (301)
                      ++......|.+...          ..+|.|||+-+
T Consensus       217 gg~~v~~~Fg~a~~t~~~~~~f~~~~~dGILGLg~  251 (451)
T 3qvc_A          217 GKLSVPYKFIEMTEIVGFEPFYSESDVDGVFGLGW  251 (451)
T ss_dssp             TTEEEEEEEEEEEEEEECTTHHHHSCCCEEEECSS
T ss_pred             CCEEEEEEEEEEEeccccCCCccCCCCCEEEecCC
Confidence            88776656655543          34799999854

>1eoq_A GAG polyprotein capsid protein P27; virus/viral protein; NMR {Rous sarcoma virus - prague C} SCOP: a.28.3.1

Probab=87.43  E-value=1.2  Score=30.54  Aligned_cols=64  Identities=16%  Similarity=0.209  Sum_probs=47.7

Q ss_pred             cCcc--cccHHHHHHHHHHHHHHhhc---CCHHHHHHHHHhcCCHHHHHhcccC--CCCcHHHHHHHHHHH
Q 036248           41 KLTQ--TSSVEAYQSTFENICNRVTN---LHPDAILDCFISGLKPTIQNELAIH--KPSNLRDAIALAKLI  104 (301)
Q Consensus        41 ~lkQ--~~sv~~Y~~~f~~L~~~~~~---~~e~~~~~~f~~GL~~~i~~~l~~~--~p~tl~~~~~~A~~~  104 (301)
                      .+||  .|+..+|++||-.-.+.-..   ..-.......++.-+++.+..|+..  .-.|+++++...+..
T Consensus         2 dIkQGPkEPFrDyVdRf~kalraeqa~~~vK~wmt~tLlvQNANPdCk~iLkal~g~~~tl~em~~yi~~~   72 (96)
T 1eoq_A            2 DIMQGPSESFVDFANRLIKAVEGSDLPPSARAPVIIDCFRQKSQPDIQQLIRTAPSTLTTPGEIIKYVLDR   72 (96)
T ss_dssp             CCCCCTTCCHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHSCHHHHHHHHHCCSCCCSHHHHHHHHHHH
T ss_pred             CcccCCCCcHHHHHHHHHHHHHHhhccHhHhhhhHHHHHHHhcCHHHHHHHHccCCCCCCHHHHHHHHHHH
Confidence            5788  89999999999887776321   1223445677788899999999864  457889988877663

>2x0b_A Renin; hydrolase-hormone complex, hydrolase hormone complex, vasoconstrictor, glycoprotein, hypertension, serpins; 4.33A {Homo sapiens}

Probab=87.32  E-value=3  Score=36.85  Aligned_cols=87  Identities=16%  Similarity=0.242  Sum_probs=51.3

Q ss_pred             EEEEEEc--CEeEEEEEcCCCCccccCHH--------HHHHcCcceec-------ccceEEEEecCceEeecceeeeEEE
Q 036248          190 QLSAKIN--NKPLSVLIDTGSTHNYLHPR--------LAHFLHLAIEK-------TMSFLVAVGNGERIRSEGHCSKVKF  252 (301)
Q Consensus       190 ~i~~~v~--~~~v~~liDsGAs~~~i~~~--------~~~~~~~~~~~-------~~~~~v~~~~g~~~~~~~~~~~~~~  252 (301)
                      .+.+.|.  .+++.+++||||+...|...        |...-......       ..+..+..++|. +  .+....=.|
T Consensus        64 ~~~I~IGTP~Q~f~vi~DTGSs~lWV~s~~C~~~~~~C~~~~~y~~~~SsT~~~~~~~~~i~Yg~Gs-~--~G~~~~Dtv  140 (383)
T 2x0b_A           64 YGEIGIGTPPQTFKVVFDTGSSNVWVPSSKCSRLYTACVYHKLFDASDSSSYKHNGTELTLRYSTGT-V--SGFLSQDII  140 (383)
T ss_dssp             EEEEEETTTTEEEEEEEETTCCCEEEEBTTSCTTSHHHHTSCCBCGGGCTTCEEEEEEEEEECSSCE-E--EEEEEEEEE
T ss_pred             EEEEEECCCCcEEEEEEeCCCCCeEEeccCCCCCcccccCCCCCCCCCCCcEEECCcEEEEEcCCcc-E--EEEEEeeEE
Confidence            4445665  58999999999999887543        22211121111       124566677775 3  333334456


Q ss_pred             EEeceeEEEeEEEecC--------CCCcEEecHHH
Q 036248          253 EMQGVGFEADFHILDF--------SRADAVLGVQW  279 (301)
Q Consensus       253 ~~~~~~~~~~~~v~~~--------~~~d~ILG~dw  279 (301)
                      .+++......|.+...        ..+|.|||+-|
T Consensus       141 ~ig~~~v~~~Fg~a~~~~g~~f~~~~~dGIlGLg~  175 (383)
T 2x0b_A          141 TVGGITVTQMFGEVTEMPALPFMLAEFDGVVGMGF  175 (383)
T ss_dssp             EETTEEEEEEEEEEEECCHHHHTTCSSSEEEECSC
T ss_pred             EEcCceEEEEEEEEEecCCcccccCCCceEeccCC
Confidence            7777665555544432        25899999854

>3g21_A GAG polyprotein, capsid protein; alpha-helical bundle, virion, viral protein, retrovirus; 0.90A {Rous sarcoma virus} PDB: 3g1i_A 3g28_A 3g29_A 3g26_A 3g0v_A

Probab=87.05  E-value=1.6  Score=28.67  Aligned_cols=64  Identities=16%  Similarity=0.226  Sum_probs=44.8

Q ss_pred             HhcCcc--cccHHHHHHHHHHHHHHhhc---CCHHHHHHHHHhcCCHHHHHhcccC-CCCcH-HHHHHHHH
Q 036248           39 LFKLTQ--TSSVEAYQSTFENICNRVTN---LHPDAILDCFISGLKPTIQNELAIH-KPSNL-RDAIALAK  102 (301)
Q Consensus        39 l~~lkQ--~~sv~~Y~~~f~~L~~~~~~---~~e~~~~~~f~~GL~~~i~~~l~~~-~p~tl-~~~~~~A~  102 (301)
                      |..++|  .|+..+|+.||..-...-..   ..+..+....++.=+++.|..++.. .-.++ +|++...+
T Consensus         4 ~tdI~QGPkEPF~dfVdRl~kal~~e~~~~~vk~~m~~tLl~QNANpdCk~ilk~l~~~~~~~~e~ik~~~   74 (77)
T 3g21_A            4 WADIMQGPSESFVDFANRLIKAVEGSDLPPSARAPVIIDCFRQKSQPDIQQLIRTAPSTLTTPGEIIKYVL   74 (77)
T ss_dssp             GGGCCCCTTCCHHHHHHHHHHHHHTSSSCHHHHHHHHHHHHHHHSCHHHHHHHTTSCTTCCSHHHHHHHHH
T ss_pred             ccccccCCCccHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHhcCHHHHHHHHhCCCCCCCHHHHHHHHH
Confidence            567899  89999999999987664321   2344556677788899999888753 33344 77776543

>3vla_A EDGP; extracellular, inhibitor, plant protein; HET: NAG; 0.95A {Daucus carota} PDB: 3vlb_A

Probab=85.73  E-value=2  Score=38.37  Aligned_cols=26  Identities=23%  Similarity=0.225  Sum_probs=23.4

Q ss_pred             cEEecHHHHhhcCCeEeeccceEEEEE
Q 036248          272 DAVLGVQWLEKLGKIITDHKALTMEFT  298 (301)
Q Consensus       272 d~ILG~dwL~~~~~i~id~~~~~~~~~  298 (301)
                      -.|||..||+.+- +..|..+++|.|.
T Consensus       371 ~~IlGd~fl~~~~-vvfD~~~~riGfa  396 (413)
T 3vla_A          371 SIVIGGHQLEDNL-VQFDLATSRVGFS  396 (413)
T ss_dssp             SEEECHHHHTTEE-EEEETTTTEEEEE
T ss_pred             ceeEehhhhcCeE-EEEECCCCEEEEE
Confidence            3699999999999 5899999999985

>2qp8_A Beta-secretase 1; BACE1, protease, alternative splicing, aspartyl protease, glycoprotein, hydrolase, membrane, transmembrane, zymogen; HET: TAR SC7; 1.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 2qk5_A* 2qmf_A* 2qmg_A* 2qmd_A* 4djx_A* 3l59_A* 3l5b_A* 3l5c_A* 3l58_A* 3l5d_A* 3l5f_A* 4dju_A* 4djv_A* 4djw_A* 3l5e_A* 4djy_A* 2zhv_A 2zhs_A 2zhr_A 2zhu_A ...

Probab=85.71  E-value=3.7  Score=36.23  Aligned_cols=28  Identities=18%  Similarity=0.339  Sum_probs=24.6

Q ss_pred             CcEEecHHHHhhcCCeEeeccceEEEEEe
Q 036248          271 ADAVLGVQWLEKLGKIITDHKALTMEFTY  299 (301)
Q Consensus       271 ~d~ILG~dwL~~~~~i~id~~~~~~~~~~  299 (301)
                      -..|||..||+.+- +..|..+++|.|..
T Consensus       338 ~~~ILG~~fl~~~y-vvfD~~~~rIGfA~  365 (395)
T 2qp8_A          338 TGTVMGAVIMEGFY-VVFDRARKRIGFAV  365 (395)
T ss_dssp             SCEEECHHHHTTEE-EEEETTTTEEEEEE
T ss_pred             CcEEEChHHhCCee-EEEECCCCEEEEEe
Confidence            45899999999999 48999999999853

>1bxo_A Protein (penicillopepsin); hydrolase, phosphonate inhibitors, macrocycle; HET: MAN PP7; 0.95A {Penicillium janthinellum} SCOP: b.50.1.2 PDB: 1apu_E* 1apv_E* 1apw_E* 1apt_E* 1bxq_A* 1ppk_E* 1ppl_E* 1ppm_E* 2wea_A* 2web_A* 2wec_A* 2wed_A* 3app_A

Probab=85.39  E-value=3.5  Score=35.33  Aligned_cols=88  Identities=16%  Similarity=0.267  Sum_probs=51.1

Q ss_pred             EEEEEEcCEeEEEEEcCCCCccccCHHHHHH---cCcce-e--------cccceEEEEecCceEeecceeeeEEEEEece
Q 036248          190 QLSAKINNKPLSVLIDTGSTHNYLHPRLAHF---LHLAI-E--------KTMSFLVAVGNGERIRSEGHCSKVKFEMQGV  257 (301)
Q Consensus       190 ~i~~~v~~~~v~~liDsGAs~~~i~~~~~~~---~~~~~-~--------~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~  257 (301)
                      .+.+.|..+++.+++||||+...|...-+..   .+.+. .        ...+..+..++|....  +....=.|.+++.
T Consensus        18 ~~~i~iG~Q~~~v~~DTGSs~lWv~~~~C~~~~c~~~~~y~~~~Ss~~~~~~~~~i~Yg~Gs~~~--G~~~~D~v~ig~~   95 (323)
T 1bxo_A           18 ITPVTIGGTTLNLNFDTGSADLWVFSTELPASQQSGHSVYNPSATGKELSGYTWSISYGDGSSAS--GNVFTDSVTVGGV   95 (323)
T ss_dssp             EEEEEETTEEEEEEEETTCCCEEECBTTSCHHHHTTSCCBCHHHHCEEEEEEEEEEECTTSCEEE--EEEEEEEEEETTE
T ss_pred             EEEEEECCEEEEEEEeCCCcceEEecCCCCchhccCCCCCCcccCCcccCCCeEEEEeCCCCeEE--EEEEEEEEEECCE
Confidence            5667788899999999999998876432111   11111 1        1234566666776432  2222334566665


Q ss_pred             eEE-EeEEEecC--------CCCcEEecHHH
Q 036248          258 GFE-ADFHILDF--------SRADAVLGVQW  279 (301)
Q Consensus       258 ~~~-~~~~v~~~--------~~~d~ILG~dw  279 (301)
                      ... ..|.+...        ...|.|||+-+
T Consensus        96 ~v~~~~fg~~~~~~~~~~~~~~~~GilGLg~  126 (323)
T 1bxo_A           96 TAHGQAVQAAQQISAQFQQDTNNDGLLGLAF  126 (323)
T ss_dssp             EEEEEEEEEEEEECHHHHTCTTCSEEEECSC
T ss_pred             EECcEEEEEEEecCcccccCCCCceEEEeCc
Confidence            543 24444331        35899999865

>1wkr_A Polyporopepsin; hydrolase, hydrolase-hydrolase inhibitor complex; HET: STA; 1.30A {Irpex lacteus} SCOP: b.50.1.2

Probab=85.34  E-value=4.1  Score=35.11  Aligned_cols=85  Identities=19%  Similarity=0.298  Sum_probs=49.7

Q ss_pred             EEEEEEc--CEeEEEEEcCCCCccccCHHHHHHcCcce---ecccceEEEEecCceEeecceeeeEEEEEeceeEE-EeE
Q 036248          190 QLSAKIN--NKPLSVLIDTGSTHNYLHPRLAHFLHLAI---EKTMSFLVAVGNGERIRSEGHCSKVKFEMQGVGFE-ADF  263 (301)
Q Consensus       190 ~i~~~v~--~~~v~~liDsGAs~~~i~~~~~~~~~~~~---~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~-~~~  263 (301)
                      .+.+.|.  .+++.+++||||+...|...  ....-..   ....+..+..++|. +  .+....=.|.+++.... ..|
T Consensus        15 ~~~i~iGTP~q~~~v~~DTGSs~lWv~~~--~~y~~s~Ss~~~~~~~~i~Yg~Gs-~--~G~~~~Dtv~~g~~~v~~~~f   89 (340)
T 1wkr_A           15 VVNVGVGSPATTYSLLVDTGSSNTWLGAD--KSYVKTSTSSATSDKVSVTYGSGS-F--SGTEYTDTVTLGSLTIPKQSI   89 (340)
T ss_dssp             EEEEEETTTTEEEEEEEETTCCCCEECSS--SCCCCCTTCEEEEEEEEEECSSCE-E--EEEEEEEEEEETTEEEEEEEE
T ss_pred             EEEEEECCCCcEEEEEEeCCChhheecCC--CccCCcCCccccCceEEEEECCcE-E--EEEEEEEEEEECCEEEcceEE
Confidence            5566776  78999999999999988643  1111000   11235666777776 3  23333445566665443 234


Q ss_pred             EEec----CCCCcEEecHHH
Q 036248          264 HILD----FSRADAVLGVQW  279 (301)
Q Consensus       264 ~v~~----~~~~d~ILG~dw  279 (301)
                      .+..    ....|.|||+-+
T Consensus        90 g~~~~~~~~~~~~GilGLg~  109 (340)
T 1wkr_A           90 GVASRDSGFDGVDGILGVGP  109 (340)
T ss_dssp             EEEEEEESCTTCSEEEECSC
T ss_pred             EEEEccCCCcCCCcEEECCc
Confidence            3332    235899999854

>1ibq_A Aspergillopepsin; aspartic proteinase, hydrolase; HET: MAN; 2.14A {Aspergillus phoenicis} SCOP: b.50.1.2

Probab=84.54  E-value=2.3  Score=36.52  Aligned_cols=88  Identities=15%  Similarity=0.201  Sum_probs=51.4

Q ss_pred             EEEEEEcCEeEEEEEcCCCCccccCHHHHH-----Hc-Cccee------cccceEEEEecCceEeecceeeeEEEEEece
Q 036248          190 QLSAKINNKPLSVLIDTGSTHNYLHPRLAH-----FL-HLAIE------KTMSFLVAVGNGERIRSEGHCSKVKFEMQGV  257 (301)
Q Consensus       190 ~i~~~v~~~~v~~liDsGAs~~~i~~~~~~-----~~-~~~~~------~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~  257 (301)
                      .+.+.|..+++.+++||||+...|...-+.     .. .....      ...+..+..++|....-  ....=.+.+++.
T Consensus        17 ~~~i~iG~Q~~~v~~DTGSs~lWv~~~~C~~~~c~~~~~y~~~~Ss~~~~~~~~~i~Yg~Gs~~~G--~~~~D~v~ig~~   94 (325)
T 1ibq_A           17 LTPVTVGKSTLHLDFDTGSADLWVFSDELPSSEQTGHDLYTPSSSATKLSGYSWDISYGDGSSASG--DVYRDTVTVGGV   94 (325)
T ss_dssp             EEEEEEBTEEEEEEEETTCCCEEEECTTSCHHHHTTSCCCBCCSSCEECTTCBEEEECSSSCEEEE--EEEEEEEEETTE
T ss_pred             EEEEEECCEEEEEEEeCCCccceEeeCCCCccccCCCCCCCchhcCCccCCCEEEEEeCCCCEEEE--EEEEeEEEECCE
Confidence            566678889999999999999887543211     11 11111      12356667777764322  222334566665


Q ss_pred             eEE-EeEEEecC--------CCCcEEecHHH
Q 036248          258 GFE-ADFHILDF--------SRADAVLGVQW  279 (301)
Q Consensus       258 ~~~-~~~~v~~~--------~~~d~ILG~dw  279 (301)
                      ... ..|.+...        ..+|.|||+-+
T Consensus        95 ~v~~~~fg~~~~~~~~~~~~~~~~GilGLg~  125 (325)
T 1ibq_A           95 TTNKQAVEAASKISSEFVQDTANDGLLGLAF  125 (325)
T ss_dssp             EEEEEEEEEEEEECHHHHTSTTCCEEEECSC
T ss_pred             EEcceEEEEEEecCccccccCCCceEEEeCc
Confidence            543 23444331        36899999855

>3cms_A Chymosin B; hydrolase, acid proteinase; 2.00A {Bos taurus} SCOP: b.50.1.2 PDB: 4cms_A 1czi_E* 1cms_A

Probab=84.42  E-value=5.7  Score=33.89  Aligned_cols=87  Identities=15%  Similarity=0.207  Sum_probs=49.4

Q ss_pred             EEEEEEc--CEeEEEEEcCCCCccccCHHH-----HHHcC-cceec-------ccceEEEEecCceEeecceeeeEEEEE
Q 036248          190 QLSAKIN--NKPLSVLIDTGSTHNYLHPRL-----AHFLH-LAIEK-------TMSFLVAVGNGERIRSEGHCSKVKFEM  254 (301)
Q Consensus       190 ~i~~~v~--~~~v~~liDsGAs~~~i~~~~-----~~~~~-~~~~~-------~~~~~v~~~~g~~~~~~~~~~~~~~~~  254 (301)
                      .+.+.|.  .+++.+++||||+...|...-     +...+ .....       ..+..+..++|. .  .+....=.+.+
T Consensus        17 ~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~C~~~~C~~~~~y~~~~SsT~~~~~~~~~i~Yg~Gs-~--~G~~~~D~v~i   93 (323)
T 3cms_A           17 FGKIYLGTPPQEFTVLFDTGSSDFWVPSIYCKSNACKNHQRFDPRKSSTFQNLGKPLSIHYGTGS-M--QGILGYDTVTV   93 (323)
T ss_dssp             EEEEEETTTTEEEEEEEETTCCCEEEEBTTCCSHHHHTSCCBCGGGCTTCEEEEEEEEEEETTEE-E--EEEEEEEEEEE
T ss_pred             EEEEEECCCCeEEEEEEeCCccceEEcCCCCCcccccCCCCCCCccCCCeEECCcEEEEEeCCCC-e--EEEEEEEEEEE
Confidence            4555666  589999999999998875321     22221 11111       124566666665 2  33333445666


Q ss_pred             eceeEE-EeEEEecC--------CCCcEEecHHH
Q 036248          255 QGVGFE-ADFHILDF--------SRADAVLGVQW  279 (301)
Q Consensus       255 ~~~~~~-~~~~v~~~--------~~~d~ILG~dw  279 (301)
                      ++.... ..|.+...        ...|.|||+-+
T Consensus        94 g~~~~~~~~fg~~~~~~~~~~~~~~~~GilGLg~  127 (323)
T 3cms_A           94 SNIVDIQQTVGLSTQEPGDFFTYAEFDGILGMAY  127 (323)
T ss_dssp             TTEEEEEEEEEEEEECCSHHHHHSSCSEEEECSC
T ss_pred             CCeEEeccEEEEEEecccccccccCCceEEecCc
Confidence            776544 34444332        24799999744

>1izd_A Aspartic proteinase; sugar binding, acid protease, hydrolase; HET: MAN; 1.90A {Aspergillus oryzae} SCOP: b.50.1.2 PDB: 1ize_A*

Probab=84.22  E-value=2.3  Score=36.51  Aligned_cols=88  Identities=17%  Similarity=0.307  Sum_probs=50.8

Q ss_pred             EEEEEEcCEeEEEEEcCCCCccccCHHHHHH---cCcce-ec--------ccceEEEEecCceEeecceeeeEEEEEece
Q 036248          190 QLSAKINNKPLSVLIDTGSTHNYLHPRLAHF---LHLAI-EK--------TMSFLVAVGNGERIRSEGHCSKVKFEMQGV  257 (301)
Q Consensus       190 ~i~~~v~~~~v~~liDsGAs~~~i~~~~~~~---~~~~~-~~--------~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~  257 (301)
                      .+.+.|..+++.+++||||+...|...-+..   .+.+. .+        ..+..+..++|....  +....=.|.+++.
T Consensus        18 ~~~i~iG~q~~~v~~DTGSs~lWv~~~~C~~~~c~~~~~y~~~~Ss~~~~~~~~~i~Yg~Gs~~~--G~~~~D~v~ig~~   95 (323)
T 1izd_A           18 ITQVTVGDDTLGLDFDTGSADLWVFSSQTPSSERSGHDYYTPGSSAQKIDGATWSISYGDGSSAS--GDVYKDKVTVGGV   95 (323)
T ss_dssp             EEEEEETTEEEEEEEETTCCCEEECBTTSCHHHHTTCCCBCCCTTCEEEEEEEEEEECTTSCEEE--EEEEEEEEEETTE
T ss_pred             EEEEEECCEEEEEEEcCCCcceEEecCCCCcccccCCCCCCccccCCccCCCeEEEEcCCCCeEE--EEEEEEEEEECCE
Confidence            5667788899999999999998886542211   11111 11        124455556666332  2222334566666


Q ss_pred             eEE-EeEEEecC--------CCCcEEecHHH
Q 036248          258 GFE-ADFHILDF--------SRADAVLGVQW  279 (301)
Q Consensus       258 ~~~-~~~~v~~~--------~~~d~ILG~dw  279 (301)
                      ... ..|.+...        ..+|.|||+-+
T Consensus        96 ~v~~~~fg~~~~~~~~~~~~~~~~GilGLg~  126 (323)
T 1izd_A           96 SYDSQAVESAEKVSSEFTQDTANDGLLGLAF  126 (323)
T ss_dssp             EEEEEEEEEEEEECHHHHHCTTCCEEEECSC
T ss_pred             EECceEEEEEEeccccccccCCCceEEecCc
Confidence            554 34444432        35899999765

>1miq_A Plasmepsin; aspartic proteinase zymogen, domain opening, hydrolase; 2.50A {Plasmodium vivax} SCOP: b.50.1.2 PDB: 1ls5_A*

Probab=82.39  E-value=2.1  Score=37.71  Aligned_cols=84  Identities=18%  Similarity=0.351  Sum_probs=49.0

Q ss_pred             EEEc--CEeEEEEEcCCCCccccCHHHHH-----Hc-Ccceec-------ccceEEEEecCceEeecceeeeEEEEEece
Q 036248          193 AKIN--NKPLSVLIDTGSTHNYLHPRLAH-----FL-HLAIEK-------TMSFLVAVGNGERIRSEGHCSKVKFEMQGV  257 (301)
Q Consensus       193 ~~v~--~~~v~~liDsGAs~~~i~~~~~~-----~~-~~~~~~-------~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~  257 (301)
                      +.|.  .+++.+++||||+...|...-+.     .. ......       ..+..+..++|. +  .+....=.|.+++.
T Consensus        68 i~iGTP~Q~~~v~~DTGSs~lWv~~~~C~~~~C~~~~~y~~~~SsT~~~~~~~~~i~Yg~Gs-~--~G~~~~Dtv~ig~~  144 (375)
T 1miq_A           68 GEVGDNHQKFMLIFDTGSANLWVPSKKCNSSGCSIKNLYDSSKSKSYEKDGTKVDITYGSGT-V--KGFFSKDLVTLGHL  144 (375)
T ss_dssp             CEETTTTEECCEEEETTCCCEEEEBTTCCSSGGGGSCCBCGGGCTTCEEEEEEEEEEETTEE-E--EEEEEEEEEEETTE
T ss_pred             EEECCCCeEEEEEEeCCCcceEEccCCCCcccccCCCcCCCccCCceEECCcEEEEEeCCCe-E--EEEEEEEEEEEcCc
Confidence            3555  58899999999999887543221     11 111111       124556666665 2  33333445677776


Q ss_pred             eEEEeEEEecC----------CCCcEEecHHH
Q 036248          258 GFEADFHILDF----------SRADAVLGVQW  279 (301)
Q Consensus       258 ~~~~~~~v~~~----------~~~d~ILG~dw  279 (301)
                      .....|.+...          ..+|.|||+-+
T Consensus       145 ~v~~~Fg~~~~~~~~~~~f~~~~~dGilGLg~  176 (375)
T 1miq_A          145 SMPYKFIEVTDTDDLEPIYSSVEFDGILGLGW  176 (375)
T ss_dssp             EEEEEEEEEEECGGGTTHHHHSCCCEEEECSS
T ss_pred             eECcEEEEEEeccccccccccCCCceEEeCCC
Confidence            65545554443          35899999865

>1baj_A GAG polyprotein; capsid, HIV-1 assembly protein, viral protein; 2.60A {Human immunodeficiency virus 1} SCOP: a.28.3.1

Probab=82.27  E-value=2.2  Score=29.95  Aligned_cols=66  Identities=9%  Similarity=0.185  Sum_probs=45.4

Q ss_pred             HHhcCcc--cccHHHHHHHHHHHHHHhhcCCHH----HHHHHHHhcCCHHHHHhcccC-CCCcHHHHHHHHHHH
Q 036248           38 TLFKLTQ--TSSVEAYQSTFENICNRVTNLHPD----AILDCFISGLKPTIQNELAIH-KPSNLRDAIALAKLI  104 (301)
Q Consensus        38 ~l~~lkQ--~~sv~~Y~~~f~~L~~~~~~~~e~----~~~~~f~~GL~~~i~~~l~~~-~p~tl~~~~~~A~~~  104 (301)
                      .+..++|  .|+..+|++||-...+... .+.+    ......++.-+++.+..++.. .-.+|++-+..+...
T Consensus         5 s~~~ikQGpkepf~d~v~R~~k~l~~e~-~~~~vK~~~~~tL~~qnanp~Ck~~lk~l~~~~~l~e~~~ac~~v   77 (101)
T 1baj_A            5 SILDIRQGPKEPFRDYVDRFYKTLRAEQ-ASQEVKNWMTETLLVQNANPDCKTILKALGPGATLEEMMTACQGV   77 (101)
T ss_dssp             GGGGCCCCSSCCHHHHHHHHHHHHHHTT-CCHHHHHHHHHTHHHHTSCHHHHHHHHHHCSSCCHHHHHHHC---
T ss_pred             chhhhhcCCCCcHHHHHHHHHHHHHHhh-ccHHHHHHHhhhHHHHhhchhhhHHHHccCCCCCHHHHHHhcccc
Confidence            3667899  8999999999988877653 3333    333455677789988887754 446888877766553

>3k1w_A Renin; protease, alternative splicing, aspartyl protease, cleavage on PAIR of basic residues, disease mutation, disulfide bond, glycoprotein; HET: BFX NDG HSQ; 1.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 3d91_A* 3g70_A* 3g6z_A* 3own_A* 2iko_A* 1bbs_A* 1rne_A* 2bkt_A* 2bks_A* 2iku_A* 2il2_A* 2ren_A* 2v0z_C* 2v10_C* 2v11_C* 2v12_C* 2v13_A* 2v16_C* 3g72_A* 3oot_A* ...

Probab=81.81  E-value=9.3  Score=32.73  Aligned_cols=87  Identities=16%  Similarity=0.242  Sum_probs=50.8

Q ss_pred             EEEEEEc--CEeEEEEEcCCCCccccCH--------HHHHHcCccee-------cccceEEEEecCceEeecceeeeEEE
Q 036248          190 QLSAKIN--NKPLSVLIDTGSTHNYLHP--------RLAHFLHLAIE-------KTMSFLVAVGNGERIRSEGHCSKVKF  252 (301)
Q Consensus       190 ~i~~~v~--~~~v~~liDsGAs~~~i~~--------~~~~~~~~~~~-------~~~~~~v~~~~g~~~~~~~~~~~~~~  252 (301)
                      .+.+.|.  .+++.+++||||+...|..        .|...-.....       ......+..++|. .  .+....=.+
T Consensus        21 ~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~C~~~~~~C~~~~~y~~~~SsT~~~~~~~~~i~Yg~gs-~--~G~~~~D~v   97 (341)
T 3k1w_A           21 YGEIGIGTPPQTFKVVFDTGSSNVWVPSSKCSRLYTACVYHKLFDASDSSSYKHNGTELTLRYSTGT-V--SGFLSQDII   97 (341)
T ss_dssp             EEEEEETTTTEEEEEEEETTCCCEEEEBTTSCTTCHHHHTSCCBCGGGCTTCEEEEEEEEEEETTEE-E--EEEEEEEEE
T ss_pred             EEEEEEcCCCcEEEEEEeCCCcceEEccCCCCCCCCcccCCCCCCCCcCcCeeECCCEEEEEECCcE-E--EEEEEEEEE
Confidence            4455666  5899999999999988853        23211111111       1124566666665 2  344344456


Q ss_pred             EEeceeEEEeEEEecC--------CCCcEEecHHH
Q 036248          253 EMQGVGFEADFHILDF--------SRADAVLGVQW  279 (301)
Q Consensus       253 ~~~~~~~~~~~~v~~~--------~~~d~ILG~dw  279 (301)
                      .+++......|.+...        ..+|.|||+-+
T Consensus        98 ~ig~~~v~~~fg~~~~~~~~~~~~~~~~GilGLg~  132 (341)
T 3k1w_A           98 TVGGITVTQMFGEVTEMPALPFMLAEFDGVVGMGF  132 (341)
T ss_dssp             EETTEEEEEEEEEEEECCHHHHTTCSSSEEEECSC
T ss_pred             EECCceeeEEEEEEEEccccccccCCcceEEECCc
Confidence            7777766445555432        23699999854

>4aa9_A Chymosin; hydrolase, aspartic peptidase, rennet; HET: NAG; 1.60A {Camelus dromedarius} PDB: 4aa8_A 1czi_E* 1cms_A 4cms_A 3cms_A

Probab=81.74  E-value=7.2  Score=33.12  Aligned_cols=87  Identities=17%  Similarity=0.229  Sum_probs=50.8

Q ss_pred             EEEEEEc--CEeEEEEEcCCCCccccCHH------HHHHcCcceec-------ccceEEEEecCceEeecceeeeEEEEE
Q 036248          190 QLSAKIN--NKPLSVLIDTGSTHNYLHPR------LAHFLHLAIEK-------TMSFLVAVGNGERIRSEGHCSKVKFEM  254 (301)
Q Consensus       190 ~i~~~v~--~~~v~~liDsGAs~~~i~~~------~~~~~~~~~~~-------~~~~~v~~~~g~~~~~~~~~~~~~~~~  254 (301)
                      .+.+.|.  .+++.+++||||+...|...      +...-......       .....+..++|. .  .+....=.+.+
T Consensus        14 ~~~i~iGtP~Q~~~v~~DTGSs~~Wv~~~~C~~~~C~~~~~y~~~~SsT~~~~~~~~~i~Yg~gs-~--~G~~~~D~v~i   90 (320)
T 4aa9_A           14 FGKIYIGTPPQEFTVVFDTGSSDLWVPSIYCKSNVCKNHHRFDPRKSSTFRNLGKPLSIHYGTGS-M--EGFLGYDTVTV   90 (320)
T ss_dssp             EEEEEETTTTEEEEEEEETTCCCEEEEBTTCCSHHHHTSCCBCGGGCTTCEEEEEEEEEEETTEE-E--EEEEEEEEEEE
T ss_pred             EEEEEECCCCeEEEEEEeCCCCceEEcCCCCCccccCCCCCCCCCCCcCeEcCCcEEEEEECCcE-E--EEEEEEEEEEE
Confidence            5556776  58999999999999888542      22111111111       124566666665 2  34434445677


Q ss_pred             eceeEE-EeEEEecC--------CCCcEEecHHH
Q 036248          255 QGVGFE-ADFHILDF--------SRADAVLGVQW  279 (301)
Q Consensus       255 ~~~~~~-~~~~v~~~--------~~~d~ILG~dw  279 (301)
                      ++.... ..|.+...        ..+|.|||+-+
T Consensus        91 g~~~v~~~~fg~~~~~~~~~~~~~~~~GilGLg~  124 (320)
T 4aa9_A           91 SNIVDPNQTVGLSTEQPGEVFTYSEFDGILGLAY  124 (320)
T ss_dssp             TTEEEEEEEEEEEEECCSHHHHSCCCSEEEECSC
T ss_pred             CCEeecCeEEEEEEEcccccccccCcccEEecCc
Confidence            776654 34544432        23699999853

>3psg_A Pepsinogen; hydrolase(acid proteinase zymogen); 1.65A {Sus scrofa} SCOP: b.50.1.2 PDB: 2psg_A 4pep_A* 3pep_A* 1f34_A* 1psa_A* 1yx9_A 5pep_A 1flh_A 1qrp_E* 1psn_A* 1pso_E* 3utl_A

Probab=81.19  E-value=6.1  Score=34.59  Aligned_cols=87  Identities=16%  Similarity=0.286  Sum_probs=50.7

Q ss_pred             EEEEEEc--CEeEEEEEcCCCCccccCHHHHH-----Hc-Cccee-------cccceEEEEecCceEeecceeeeEEEEE
Q 036248          190 QLSAKIN--NKPLSVLIDTGSTHNYLHPRLAH-----FL-HLAIE-------KTMSFLVAVGNGERIRSEGHCSKVKFEM  254 (301)
Q Consensus       190 ~i~~~v~--~~~v~~liDsGAs~~~i~~~~~~-----~~-~~~~~-------~~~~~~v~~~~g~~~~~~~~~~~~~~~~  254 (301)
                      .+.+.|.  .+++.+++||||+...|....+.     .. .....       ......+..++|. +  .+....=.|.+
T Consensus        59 ~~~i~iGTPpQ~~~v~~DTGSs~lWV~s~~C~~~~C~~~~~y~~~~SsT~~~~~~~~~i~Yg~Gs-~--~G~~~~Dtv~i  135 (370)
T 3psg_A           59 FGTIGIGTPAQDFTVIFDTGSSNLWVPSVYCSSLACSDHNQFNPDDSSTFEATSQELSITYGTGS-M--TGILGYDTVQV  135 (370)
T ss_dssp             EEEEEETTTTEEEEEEEETTCCCEEEEBTTCCSGGGTTSCCBCGGGCTTCEEEEEEEEEESSSCE-E--EEEEEEEEEEE
T ss_pred             EEEEEEcCCCCEEEEEEeCCCCccEEECCCCCCcccCCCCCCCCccCcCcEECCcEEEEEeCCce-E--EEEEEEEEEee
Confidence            3445565  48999999999999888643221     11 11111       1134566666776 2  33333445677


Q ss_pred             eceeEE-EeEEEecCC--------CCcEEecHHH
Q 036248          255 QGVGFE-ADFHILDFS--------RADAVLGVQW  279 (301)
Q Consensus       255 ~~~~~~-~~~~v~~~~--------~~d~ILG~dw  279 (301)
                      ++.... ..|.+....        .+|.|||+-+
T Consensus       136 g~~~v~~~~Fg~a~~~~~~~~~~~~~dGIlGLg~  169 (370)
T 3psg_A          136 GGISDTNQIFGLSETEPGSFLYYAPFDGILGLAY  169 (370)
T ss_dssp             TTEEEEEEEEEEECSCCCGGGGGCSCSEEEECSC
T ss_pred             CCcccCCeEEEEEEeecccccccCCccceeccCC
Confidence            777665 455554432        3799999853

>3c9x_A Trichoderma reesei aspartic protease; aspartic proteinase, aspartyl protease, hydrolase; 1.70A {Trichoderma reesei} PDB: 3c9y_A* 3emy_A*

Probab=81.09  E-value=6.8  Score=33.56  Aligned_cols=88  Identities=16%  Similarity=0.220  Sum_probs=50.7

Q ss_pred             EEEEEEc--CEeEEEEEcCCCCccccCHHHHHH-----c-Cccee--------cccceEEEEecCceEeecceeeeEEEE
Q 036248          190 QLSAKIN--NKPLSVLIDTGSTHNYLHPRLAHF-----L-HLAIE--------KTMSFLVAVGNGERIRSEGHCSKVKFE  253 (301)
Q Consensus       190 ~i~~~v~--~~~v~~liDsGAs~~~i~~~~~~~-----~-~~~~~--------~~~~~~v~~~~g~~~~~~~~~~~~~~~  253 (301)
                      .+.+.|.  .+++.+++||||+...|...-+..     . .....        ...+..+..++|....  +....=.|.
T Consensus        18 ~~~i~iGTP~Q~~~v~~DTGSs~lWv~~~~C~~~~~~~~~~y~~~~SsT~~~~~~~~~~i~Yg~Gs~~~--G~~~~D~v~   95 (329)
T 3c9x_A           18 ITSVSIGTPAQVLPLDFDTGSSDLWVFSSETPKSSATGHAIYTPSKSSTSKKVSGASWSISYGDGSSSS--GDVYTDKVT   95 (329)
T ss_dssp             EEEEEETTTTEEEEEEEETTCCCEEECBTTSCHHHHTTSCCBCGGGCTTCEECTTCBEEEECTTSCEEE--EEEEEEEEE
T ss_pred             EEEEEECCCCeEEEEEEcCCCCCeEEecCCCCccccCCCCcCCcccCcCceEcCCCeEEEEeCCCCcEE--EEEEEEEEE
Confidence            5556777  799999999999998886532111     1 11110        1234666777776432  222333456


Q ss_pred             EeceeEE-EeEEEecC--------CCCcEEecHHH
Q 036248          254 MQGVGFE-ADFHILDF--------SRADAVLGVQW  279 (301)
Q Consensus       254 ~~~~~~~-~~~~v~~~--------~~~d~ILG~dw  279 (301)
                      +++.... ..|.+...        ..+|.|||+-+
T Consensus        96 ig~~~v~~~~fg~~~~~~~~~~~~~~~~GilGLg~  130 (329)
T 3c9x_A           96 IGGFSVNTQGVESATRVSTEFVQDTVISGLVGLAF  130 (329)
T ss_dssp             ETTEEEEEEEEEEEEEECHHHHHCTTCCEEEECSC
T ss_pred             ECCEEEcceEEEEEEecCccccccCCCceeEEeCc
Confidence            6665543 23443331        36899999865

>1oew_A Endothiapepsin; hydrolase, aspartic proteinase mechanism, atomic resolution, succinimide, anisotropic refinement; HET: SUI; 0.9A {Cryphonectria parasitica} SCOP: b.50.1.2 PDB: 1gkt_A* 1gvt_A* 1gvv_A* 1gvw_A* 1gvx_A* 1gvu_A* 1oex_A* 2jji_A* 2jjj_A* 2vs2_A* 3uri_A* 3urj_A* 3url_A* 3pww_A* 1e80_E* 1e81_E* 1e82_E* 1e5o_E* 1eed_P* 1epl_E* ...

Probab=80.75  E-value=6.5  Score=33.67  Aligned_cols=88  Identities=16%  Similarity=0.247  Sum_probs=50.1

Q ss_pred             EEEEEEc--CEeEEEEEcCCCCccccCHHHHHHc-----Cccee--------cccceEEEEecCceEeecceeeeEEEEE
Q 036248          190 QLSAKIN--NKPLSVLIDTGSTHNYLHPRLAHFL-----HLAIE--------KTMSFLVAVGNGERIRSEGHCSKVKFEM  254 (301)
Q Consensus       190 ~i~~~v~--~~~v~~liDsGAs~~~i~~~~~~~~-----~~~~~--------~~~~~~v~~~~g~~~~~~~~~~~~~~~~  254 (301)
                      .+.+.|.  .+++.+++||||+...|...-+...     .....        ......+..++|....  +....=.|.+
T Consensus        18 ~~~i~iGTP~Q~~~v~~DTGSs~lWv~~~~C~~~~~~~~~y~~~~SsT~~~~~~~~~~i~Yg~Gs~~~--G~~~~D~v~~   95 (329)
T 1oew_A           18 ITPVQIGTPAQTLNLDFDTGSSDLWVFSSETTASEVXQTIYTPSKSTTAKLLSGATWSISYGDGSSSS--GDVYTDTVSV   95 (329)
T ss_dssp             EEEEEETTTTEEEEEEEETTCCCEEECBTTSCGGGC-CCCBCGGGCTTCEEEEEEEEEEECTTSCEEE--EEEEEEEEEE
T ss_pred             EEEEEECCCCeEEEEEECCCCCCeEEecCCCCccccccCccCCccCccceecCCCeEEEEeCCCCcEE--EEEEEEEEEE
Confidence            5556777  7999999999999988865322211     11111        0123455566676332  2323335566


Q ss_pred             eceeEE-EeEEEecC--------CCCcEEecHHH
Q 036248          255 QGVGFE-ADFHILDF--------SRADAVLGVQW  279 (301)
Q Consensus       255 ~~~~~~-~~~~v~~~--------~~~d~ILG~dw  279 (301)
                      ++.... ..|.+...        ...|.|||+-+
T Consensus        96 g~~~v~~~~fg~~~~~~~~~~~~~~~~GilGLg~  129 (329)
T 1oew_A           96 GGLTVTGQAVESAKKVSSSFTEDSTIDGLLGLAF  129 (329)
T ss_dssp             TTEEEEEEEEEEEEEECHHHHHCTTCCEEEECSC
T ss_pred             CCEEEeeeEEEEEEecCccccccCCCceEEEecc
Confidence            666543 24444331        35899999855

>1yg9_A Aspartic protease BLA G 2; allegren, hydrolase, allergen; HET: NAG; 1.30A {Blattella germanica} PDB: 2nr6_A* 3liz_A*

Probab=80.10  E-value=3.6  Score=35.34  Aligned_cols=87  Identities=18%  Similarity=0.140  Sum_probs=48.5

Q ss_pred             EEEEEEcCEeEEEEEcCCCCccccCHHHHHH-----cCcce-ecc--------cceEEEEecCceEeecceeeeEEEEEe
Q 036248          190 QLSAKINNKPLSVLIDTGSTHNYLHPRLAHF-----LHLAI-EKT--------MSFLVAVGNGERIRSEGHCSKVKFEMQ  255 (301)
Q Consensus       190 ~i~~~v~~~~v~~liDsGAs~~~i~~~~~~~-----~~~~~-~~~--------~~~~v~~~~g~~~~~~~~~~~~~~~~~  255 (301)
                      .+.+.|..+++.+++||||+...|...-+..     ..... .+.        .+..+..++|..   .+....=.+.++
T Consensus        20 ~~~i~iG~Q~~~v~~DTGSs~lWv~~~~C~~~~C~~~~~~~y~~~~ST~~~~~~~~~i~Yg~Gs~---~G~~~~Dtv~ig   96 (330)
T 1yg9_A           20 AGITKIGNQNFLTVFDSTSCNVVVASQECVGGACVCPNLQKYEKLKPKYISDGNVQVKFFDTGSA---VGRGIEDSLTIS   96 (330)
T ss_dssp             EEEEEETTEEEEEEEETTCCCEEEECTTCCSGGGGSTTCCCCCCSSCEEEEEEEEEEEETTTEEE---EEEEEEEEEEET
T ss_pred             EEEEEECCEEEEEEEeCCCcceEEecCCCCCccCcccccCccCCCCCceEECCCEEEEEECCceE---EEEEEEEEEEEC
Confidence            5667888899999999999998876432210     00011 111        133444445542   233333456666


Q ss_pred             ceeEE-EeEEEecC-------CCCcEEecHHH
Q 036248          256 GVGFE-ADFHILDF-------SRADAVLGVQW  279 (301)
Q Consensus       256 ~~~~~-~~~~v~~~-------~~~d~ILG~dw  279 (301)
                      +.... ..|.+...       ..+|.|||+-+
T Consensus        97 ~~~~~~~~fg~~~~~~~~f~~~~~~GilGLg~  128 (330)
T 1yg9_A           97 QLTTSQQDIVLADELSQEVCILSADVVVGIAA  128 (330)
T ss_dssp             TEEEEEEEEEEEEEECTHHHHTTCSEEEECSC
T ss_pred             CEEEcCeEEEEEEEcccccccccCceEEEcCc
Confidence            66544 34443332       24799999865

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	301
d2fmba_	104	EIAV protease {Equine infectious anemia virus [Tax	99.12
d4fiva_	113	Feline immunodeficiency virus (FIV) protease {Feli	98.53
d1nsoa_	107	Mason-Pfizer monkey virus protease {Simian retrovi	98.5
d2nmza1	99	Human immunodeficiency virus type 1 protease {Huma	98.19
d1hvca_	203	Human immunodeficiency virus type 1 protease {Huma	98.09
d3ecga1	99	Human immunodeficiency virus type 2 (HIV-2) protea	98.03
d1y7qa1	96	Zinc finger protein 174 {Human (Homo sapiens) [Tax	97.99
d2fi2a1	92	Zinc finger protein 42 {Human (Homo sapiens) [TaxI	97.99
d2rspa_	124	Rous sarcoma virus protease {Rous sarcoma virus, s	97.8
d2pmaa1	141	Uncharacterized protein LPG0085 {Legionella pneumo	97.53
d1hvca_	203	Human immunodeficiency virus type 1 protease {Huma	96.88
d1bxoa_	323	Acid protease {Fungus (Penicillium janthinellum),	95.3
d1wkra_	340	Acid protease {Irpex lacteus (Polyporus tulipifera	95.1
d1izea_	323	Acid protease {Fungus (Aspergillus oryzae) [TaxId:	95.03
d1qrjb1	84	HTLV-I capsid protein {Human T-cell leukemia virus	95.02
d1eaga_	342	Acid protease {Yeast (Candida albicans) [TaxId: 54	94.7
d1am5a_	324	Pepsin(ogen) {Atlantic cod (Gadus morhua) [TaxId:	94.43
d2bjua1	329	Plasmepsin (a hemoglobin-degrading enzyme) {Plasmo	94.37
d3cmsa_	323	Chymosin (synonym: renin) {Cow (Bos taurus) [TaxId	94.21
d1oewa_	330	Endothiapepsin {Chestnut blight fungus (Endothia p	94.07
d1miqa_	373	Plasmepsin (a hemoglobin-degrading enzyme) {Plasmo	93.97
d1j71a_	334	Acid protease {Yeast (Candida tropicalis) [TaxId:	93.93
d1a8oa_	70	HIV capsid protein, dimerisation domain {Human imm	93.61
d2eiaa1	75	EIAV capsid protein p26 {Equine infectious anemia	93.08
d1t6ex_	381	Xylanase inhibitor TAXI-I {Wheat (Triticum aestivu	92.95
d1smra_	335	Chymosin (synonym: renin) {Mouse (Mus musculus) [T	92.94
d1dpja_	329	Acid protease {Baker's yeast (Saccharomyces cerevi	92.61
g1htr.1	372	Pepsin(ogen) {Human (Homo sapiens), progastricsin	92.07
d1d1da1	80	RSV capsid protein {Rous sarcoma virus [TaxId: 118	92.02
d3psga_	370	Pepsin(ogen) {Pig (Sus scrofa) [TaxId: 9823]}	91.93
d2apra_	325	Acid protease {Bread mold (Rhizopus chinensis) [Ta	91.73
d1hrna_	337	Chymosin (synonym: renin) {Human (Homo sapiens) [T	91.57
d1qdma2	337	Plant acid proteinase, phytepsin {Barley (Hordeum	91.45
g1lya.1	338	Cathepsin D {Human (Homo sapiens) [TaxId: 9606]}	90.17
d1mppa_	357	Pepsin {Mucor pusillus [TaxId: 4840]}	88.98
d2qp8a1	387	beta-secretase (memapsin) {Human (Homo sapiens) [T	86.01
g1b5f.1	326	Plant acid proteinase, phytepsin {Cynara carduncul	81.47

>d2fmba_ b.50.1.1 (A:) EIAV protease {Equine infectious anemia virus [TaxId: 11665]}

class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Retroviral protease (retropepsin)
domain: EIAV protease
species: Equine infectious anemia virus [TaxId: 11665]

Probab=99.12  E-value=3.5e-10  Score=79.93  Aligned_cols=91  Identities=24%  Similarity=0.324  Sum_probs=68.0

Q ss_pred             EEEEEEcCEeEEEEEcCCCCccccCHHHHHHcCcceecccceEEEEecCceEeecceeeeEEEEEeceeEEEeEEEecCC
Q 036248          190 QLSAKINNKPLSVLIDTGSTHNYLHPRLAHFLHLAIEKTMSFLVAVGNGERIRSEGHCSKVKFEMQGVGFEADFHILDFS  269 (301)
Q Consensus       190 ~i~~~v~~~~v~~liDsGAs~~~i~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  269 (301)
                      .+...|+|+++.+|+||||.+++|+..-............+..+ .+.|..+...  ...+.+.+.|......++|.| .
T Consensus        10 ~~~i~I~Gq~v~~LLDTGAD~TVI~~~~~p~~~~~~~~~~~~~i-gg~g~~~~~~--~~~v~i~~~g~~~~~~~lV~p-~   85 (104)
T d2fmba_          10 TTIVLINDTPLNVLLDTGADTSVLTTAHYNRLKYRGRKYQGTGI-GGVGGNVETF--STPVTIKKKGRHIKTRMLVAD-I   85 (104)
T ss_dssp             EEEEEETTEEEEEEECTTCSSCEEEHHHHHHCSSCCCCEECCCE-EETTEEECCE--EEEEEEEETTEEEEEEEEEES-C
T ss_pred             EEEEEECCEEEEEEEeCCCCeEEEcccccCccCCCCCCcceeEE-EEecceEEEE--EEEEEEEECCeEEEEEEEECC-C
Confidence            77889999999999999999999999988876443333333333 3445544332  235788888988888888888 3


Q ss_pred             CCcEEecHHHHhhcCC
Q 036248          270 RADAVLGVQWLEKLGK  285 (301)
Q Consensus       270 ~~d~ILG~dwL~~~~~  285 (301)
                      +++ |||+|.|.+++.
T Consensus        86 Pvn-LlGRdlL~qlG~  100 (104)
T d2fmba_          86 PVT-ILGRDILQDLGA  100 (104)
T ss_dssp             SSC-EECHHHHHHHTC
T ss_pred             Ccc-eecHHHHHHhCC
Confidence            444 999999999984

>d4fiva_ b.50.1.1 (A:) Feline immunodeficiency virus (FIV) protease {Feline immunodeficiency virus [TaxId: 11673]}

class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Retroviral protease (retropepsin)
domain: Feline immunodeficiency virus (FIV) protease
species: Feline immunodeficiency virus [TaxId: 11673]

Probab=98.53  E-value=9.8e-08  Score=67.78  Aligned_cols=92  Identities=17%  Similarity=0.217  Sum_probs=60.4

Q ss_pred             EEEEEEcCEeEEEEEcCCCCccccCHHHHHHcCcceecccceEEEEecCceEeecceeeeEEEEEeceeEE-----EeEE
Q 036248          190 QLSAKINNKPLSVLIDTGSTHNYLHPRLAHFLHLAIEKTMSFLVAVGNGERIRSEGHCSKVKFEMQGVGFE-----ADFH  264 (301)
Q Consensus       190 ~i~~~v~~~~v~~liDsGAs~~~i~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~-----~~~~  264 (301)
                      .+.++|+|+++.+|+||||.+++|+..-+....-.  +..+..+... |+.+.... ..++.+.+.+....     -.+.
T Consensus        12 ~v~v~I~Gq~v~~LLDTGAD~TVi~~~d~p~~~~~--~~~~~~~~GI-GG~~~v~~-~~~v~i~~~~~~~~gtvl~g~~p   87 (113)
T d4fiva_          12 EILIFVNGYPIKFLLDTGADITILNRRDFQVKNSI--ENGRQNMIGV-GGGKRGTN-YINVHLEIRDENYKTQCIFGNVC   87 (113)
T ss_dssp             EEEEEETTEEEEEEECTTCSSCEEEGGGCCCTTCE--EEEEEEEECS-SCEEEEEE-EEEEEEEECCTTSCCCEEEEEEE
T ss_pred             eEEEEECCEEEEEEEcCCCCcEEEeccccCCCCCC--CCCCCeEEec-CeEEeeeE-EceEEEEEcCCeEeEEEEEcccc
Confidence            78899999999999999999999998743332211  1122344433 44444433 34677887765533     3445


Q ss_pred             EecCCCCc-EEecHHHHhhcCC
Q 036248          265 ILDFSRAD-AVLGVQWLEKLGK  285 (301)
Q Consensus       265 v~~~~~~d-~ILG~dwL~~~~~  285 (301)
                      |++..+++ =|||+|.|.+++.
T Consensus        88 vlp~~~~p~nllGRd~LtqlG~  109 (113)
T d4fiva_          88 VLEDNSLIQPLLGRDNMIKFNI  109 (113)
T ss_dssp             EETTCCCSSCEECHHHHHHTTC
T ss_pred             ccCCCCCcCCEEChhhhHHhCC
Confidence            55544443 3899999999984

>d1nsoa_ b.50.1.1 (A:) Mason-Pfizer monkey virus protease {Simian retrovirus 1, SRV-1 [TaxId: 11942]}

class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Retroviral protease (retropepsin)
domain: Mason-Pfizer monkey virus protease
species: Simian retrovirus 1, SRV-1 [TaxId: 11942]

Probab=98.50  E-value=2e-07  Score=65.76  Aligned_cols=91  Identities=13%  Similarity=0.022  Sum_probs=55.4

Q ss_pred             EEEEEEcCEeEEEEEcCCCCccccCHHHHHHcCcceecccceEEEEecCceEeecceeeeEEEEEece--eEEEeEEEec
Q 036248          190 QLSAKINNKPLSVLIDTGSTHNYLHPRLAHFLHLAIEKTMSFLVAVGNGERIRSEGHCSKVKFEMQGV--GFEADFHILD  267 (301)
Q Consensus       190 ~i~~~v~~~~v~~liDsGAs~~~i~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~--~~~~~~~v~~  267 (301)
                      .+.+.|+|+++.+|+||||.+++|+..-+.. .++.. ..+..+... |+....... ..+.....+.  ......+|++
T Consensus        11 ~~~v~I~G~~v~~LLDTGAD~TVI~~~~~p~-~wp~~-~~~~~~~Gi-Gg~~~~~~~-~~~l~~~~~~~~~~~~~p~vv~   86 (107)
T d1nsoa_          11 SLTLWLDDKMFTGLINTGADVTIIKLEDWPP-NWPIT-DTLTNLRGI-GQSNNPKQS-SKYLTWRDKENNSGLIKPFVIP   86 (107)
T ss_dssp             CEEEEETTEEEEECCCSSCSSCBCCGGGSCT-TSCCC-CCEEEECSS-SEEEECCCB-CCCEEEEETTTEEEEECCBBCT
T ss_pred             EEEEEECCEEEEeeecCCCCcEEEeccccCC-CCCcC-cCccEEEEe-cCeeeEEEe-eeeEEEEeCCCceEEEcceECC
Confidence            6778999999999999999999998875432 22211 112233322 444333322 2333333333  3333334666


Q ss_pred             CCCCcEEecHHHHhhcCC
Q 036248          268 FSRADAVLGVQWLEKLGK  285 (301)
Q Consensus       268 ~~~~d~ILG~dwL~~~~~  285 (301)
                      ..+++ |||+|.|.+++.
T Consensus        87 ~~Pvn-llGRd~L~qlg~  103 (107)
T d1nsoa_          87 NLPVN-LWGRDLLSQMKI  103 (107)
T ss_dssp             TCCCC-BCCHHHHHHHHT
T ss_pred             CCCcC-cccHHHHHHhCC
Confidence            55666 999999999874

>d2nmza1 b.50.1.1 (A:1-99) Human immunodeficiency virus type 1 protease {Human immunodeficiency virus type 1 [TaxId: 11676]}

class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Retroviral protease (retropepsin)
domain: Human immunodeficiency virus type 1 protease
species: Human immunodeficiency virus type 1 [TaxId: 11676]

Probab=98.19  E-value=2e-05  Score=52.82  Aligned_cols=90  Identities=17%  Similarity=0.235  Sum_probs=67.8

Q ss_pred             EEEEEEcCEeEEEEEcCCCCccccCHHHHHHcCcceecccceEEEEecCceEeecceeeeEEEEEeceeEEEeEEEecCC
Q 036248          190 QLSAKINNKPLSVLIDTGSTHNYLHPRLAHFLHLAIEKTMSFLVAVGNGERIRSEGHCSKVKFEMQGVGFEADFHILDFS  269 (301)
Q Consensus       190 ~i~~~v~~~~v~~liDsGAs~~~i~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  269 (301)
                      .+.++|.|+.+.||+||||..+++..     ..++-.. +|..+..- |+.+++.. ...+.+.+.|+.....++|-|. 
T Consensus        10 ~vtvkIgGq~~eaLLDTGADdTVlee-----i~lpg~W-kPk~IgGI-GGfikVrq-Yd~i~iei~g~k~~gtVLVgpT-   80 (99)
T d2nmza1          10 LVTIKIGGQLKEALLDTGADDTVIEE-----MSLPGRW-KPKMIGGI-GGFIKVRQ-YDQIIIEIAGHKAIGTVLVGPT-   80 (99)
T ss_dssp             EEEEEETTEEEEEEECTTCSSCEEES-----CCCCSCC-EEEEEEET-TEEEEEEE-EEEEEEEETTEEEEEEEEEESC-
T ss_pred             eEEEEECCEEEEEeeccCCCceEEec-----ccCCCCC-CceEEEec-cceEEEEE-eCceEEEECCcEEEEEEEECCC-
Confidence            67889999999999999999999843     4554322 23334433 55566543 3579999999999999999884 


Q ss_pred             CCcEEecHHHHhhcCCeEeec
Q 036248          270 RADAVLGVQWLEKLGKIITDH  290 (301)
Q Consensus       270 ~~d~ILG~dwL~~~~~i~id~  290 (301)
                      +.+ |+|++.|.+.+. .+||
T Consensus        81 PvN-IiGRN~Ltq~Gc-tLnf   99 (99)
T d2nmza1          81 PAN-IIGRNLLTQIGA-TLNF   99 (99)
T ss_dssp             SSC-EECHHHHTTTTC-EEEC
T ss_pred             Ccc-EEcccchhhcCc-eecC
Confidence            444 679999999995 8876

>d1hvca_ b.50.1.1 (A:) Human immunodeficiency virus type 1 protease {Human immunodeficiency virus type 1 [TaxId: 11676]}

class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Retroviral protease (retropepsin)
domain: Human immunodeficiency virus type 1 protease
species: Human immunodeficiency virus type 1 [TaxId: 11676]

Probab=98.09  E-value=1.4e-05  Score=60.42  Aligned_cols=90  Identities=16%  Similarity=0.215  Sum_probs=68.4

Q ss_pred             EEEEEEcCEeEEEEEcCCCCccccCHHHHHHcCcceecccceEEEEecCceEeecceeeeEEEEEeceeEEEeEEEecCC
Q 036248          190 QLSAKINNKPLSVLIDTGSTHNYLHPRLAHFLHLAIEKTMSFLVAVGNGERIRSEGHCSKVKFEMQGVGFEADFHILDFS  269 (301)
Q Consensus       190 ~i~~~v~~~~v~~liDsGAs~~~i~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  269 (301)
                      .+.++|+|+.+.||+||||..+++.     ..+++-. ..|..+... |+.+++..- ..+.+.+.++.....++|-| .
T Consensus        10 ~VtVkIgGQ~~eaLLDTGADDTVLe-----~inLpG~-WkPkiIGGI-GGfIkVrqY-~~V~IeI~gkk~~gTVLVgP-T   80 (203)
T d1hvca_          10 LVTIRIGGQLKEALLDTGADDTVLE-----EMNLPGK-WKPKMIGGI-GGFIKVRQY-DQILIEICGHKAIGTVLVGP-T   80 (203)
T ss_dssp             EEEEESSSCEEEEEECTTCSSEEEE-----CCCCSSC-EEEEEEEET-TEEEEEEEE-EEEEEEETTEEEEEEEEEES-C
T ss_pred             eEEEEECCEEEEEEecCCCCceEEe-----cccCCCC-CcccEEEec-CceEEEEEe-CCEEEEECCcEEEEEEEECC-C
Confidence            6788999999999999999999984     2444422 233344444 555555433 57899999999999999998 3


Q ss_pred             CCcEEecHHHHhhcCCeEeec
Q 036248          270 RADAVLGVQWLEKLGKIITDH  290 (301)
Q Consensus       270 ~~d~ILG~dwL~~~~~i~id~  290 (301)
                      +++ |||++.|.+.+. .++|
T Consensus        81 PvN-IIGRNlLtqlG~-tLnF   99 (203)
T d1hvca_          81 PVN-IIGRNLLTQIGC-TLNF   99 (203)
T ss_dssp             SSC-EECHHHHGGGTC-EEEC
T ss_pred             Ccc-ccchhhhhhhhh-eeec
Confidence            444 689999999995 8887

>d3ecga1 b.50.1.1 (A:1-99) Human immunodeficiency virus type 2 (HIV-2) protease {Human immunodeficiency virus type 2 [TaxId: 11709]}

class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Retroviral protease (retropepsin)
domain: Human immunodeficiency virus type 2 (HIV-2) protease
species: Human immunodeficiency virus type 2 [TaxId: 11709]

Probab=98.03  E-value=6.5e-05  Score=50.14  Aligned_cols=89  Identities=22%  Similarity=0.284  Sum_probs=65.5

Q ss_pred             EEEEEEcCEeEEEEEcCCCCccccCHHHHHHcCcceecccceEEEEecCceEeecceeeeEEEEEeceeEEEeEEEecCC
Q 036248          190 QLSAKINNKPLSVLIDTGSTHNYLHPRLAHFLHLAIEKTMSFLVAVGNGERIRSEGHCSKVKFEMQGVGFEADFHILDFS  269 (301)
Q Consensus       190 ~i~~~v~~~~v~~liDsGAs~~~i~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  269 (301)
                      .+.++|+|+.+.||+||||..+++.     ...++-. .+|..+... |+-+++.. ...+.+.+.|+.....++|-|. 
T Consensus        10 ~vtvkIgGq~~eaLLDTGADdTVle-----~i~lpg~-WkPk~iGGI-GGfikVrq-Yd~i~Ieicg~k~~gtVLvgpT-   80 (99)
T d3ecga1          10 VVTAYIEGQPVEVLLDTGADDSIVA-----GIELGNN-YSPKIVGGI-GGFINTKE-YKNVEIEVLNKKVRATIMTGDT-   80 (99)
T ss_dssp             EEEEEETTEEEEEEECTTCSSCEEC-----SCCCCSC-CEEEEEEET-TEEEEEEE-EEEEEEEETTEEEEEEEEEECC-
T ss_pred             eEEEEECCEEeeeecccCCCceeee-----ccCCCCC-CcceEEEEe-eeeEEEEE-eCcEEEEECCcEEEEEEEeCCC-
Confidence            6788999999999999999999984     3455432 234444444 55565543 3579999999999988888663 


Q ss_pred             CCcEEecHHHHhhcCCeEee
Q 036248          270 RADAVLGVQWLEKLGKIITD  289 (301)
Q Consensus       270 ~~d~ILG~dwL~~~~~i~id  289 (301)
                      +.+ |+|++.|.+.+. ..|
T Consensus        81 PvN-IiGRNlLtqlGc-tLn   98 (99)
T d3ecga1          81 PIN-IFGRNILTALGM-SLN   98 (99)
T ss_dssp             SSC-EECHHHHHHTTC-EEE
T ss_pred             Cce-EEccchhhhhCc-ccC
Confidence            333 689999999995 665

>d1y7qa1 a.28.3.2 (A:37-132) Zinc finger protein 174 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Acyl carrier protein-like
superfamily: Retrovirus capsid dimerization domain-like
family: SCAN domain
domain: Zinc finger protein 174
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.99  E-value=1.3e-05  Score=54.48  Aligned_cols=75  Identities=12%  Similarity=0.156  Sum_probs=64.0

Q ss_pred             hhhHHHHHhcCcc--cccHHHHHHHHHHHHHHhh--c------CCHHHHHHHHHhcCCHHHHHhcccCCCCcHHHHHHHH
Q 036248           32 YINHRATLFKLTQ--TSSVEAYQSTFENICNRVT--N------LHPDAILDCFISGLKPTIQNELAIHKPSNLRDAIALA  101 (301)
Q Consensus        32 ~~~~~~~l~~lkQ--~~sv~~Y~~~f~~L~~~~~--~------~~e~~~~~~f~~GL~~~i~~~l~~~~p~tl~~~~~~A  101 (301)
                      .+..+.+|+..+-  +.+..+++.++++|+.++-  .      +-|...+.+|+..|+.+++.+|..+.|.|.++|+.+|
T Consensus         6 pE~~rqrFR~f~~~e~~~P~eal~rL~eLc~~WLrPe~~tKEqilelLVLEQFl~~lP~e~q~wV~e~~p~s~eeav~L~   85 (96)
T d1y7qa1           6 PELCRQSFRRFCYQEVSGPQEALSQLRQLCRQWLQPELHTKEQILELLVMEQFLTILPEEIQARVRHRCLMSSKEIVTLV   85 (96)
T ss_dssp             TTHHHHHHHTCCSCSCCSSHHHHHHHHHHHHHHHCCSSCCHHHHHHHHHHHHHHHHSCTHHHHHHHTSCCCCHHHHHHHH
T ss_pred             hhHHHHHhcCCCcccCCCHHHHHHHHHHHHHHHcCccccCHHHHHHHHHHHHHHHHCCHHHHHHHHHhCCCCHHHHHHHH
Confidence            3446788888865  7789999999999999994  2      2455788999999999999999999999999999999


Q ss_pred             HHHHH
Q 036248          102 KLIED  106 (301)
Q Consensus       102 ~~~e~  106 (301)
                      ..+..
T Consensus        86 Edl~~   90 (96)
T d1y7qa1          86 EDFHR   90 (96)
T ss_dssp             HHHHT
T ss_pred             HHHHH
Confidence            87654

>d2fi2a1 a.28.3.2 (A:37-128) Zinc finger protein 42 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Acyl carrier protein-like
superfamily: Retrovirus capsid dimerization domain-like
family: SCAN domain
domain: Zinc finger protein 42
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.99  E-value=1.2e-05  Score=54.29  Aligned_cols=72  Identities=17%  Similarity=0.278  Sum_probs=62.4

Q ss_pred             hhHHHHHhcCcc--cccHHHHHHHHHHHHHHhhc--------CCHHHHHHHHHhcCCHHHHHhcccCCCCcHHHHHHHHH
Q 036248           33 INHRATLFKLTQ--TSSVEAYQSTFENICNRVTN--------LHPDAILDCFISGLKPTIQNELAIHKPSNLRDAIALAK  102 (301)
Q Consensus        33 ~~~~~~l~~lkQ--~~sv~~Y~~~f~~L~~~~~~--------~~e~~~~~~f~~GL~~~i~~~l~~~~p~tl~~~~~~A~  102 (301)
                      +..+.+|+..+-  .++..+++.++++|+.++-.        +-|...+.+|+..|+++++.+|..+.|.|.++|+.+|.
T Consensus         5 E~~rq~FR~f~y~e~~~p~e~l~rL~eLc~~WL~pe~~tkeqilelLVLEQFl~~lP~e~~~~V~e~~p~s~~eav~L~E   84 (92)
T d2fi2a1           5 EAARLRFRCFHYEEATGPQEALAQLRELCRQWLRPEVRSKEQMLELLVLEQFLGALPPEIQARVQGQRPGSPEEAAALVD   84 (92)
T ss_dssp             HHHHHHHHSCCCCTTTCHHHHHHHHHHHHHHHHCTTTCCHHHHHHHHHHHHHHHHSCHHHHHHHHHHCCCSHHHHHHHHH
T ss_pred             HHHHHHHhcCCCcccCCHHHHHHHHHHHHHHHcCCcccCHHHHHHHHHHHHHHHHCCHHHHHHHHHhCCCCHHHHHHHHH
Confidence            446788888764  88999999999999999932        24568899999999999999999999999999999998


Q ss_pred             HH
Q 036248          103 LI  104 (301)
Q Consensus       103 ~~  104 (301)
                      .+
T Consensus        85 dl   86 (92)
T d2fi2a1          85 GL   86 (92)
T ss_dssp             HH
T ss_pred             HH
Confidence            53

>d2rspa_ b.50.1.1 (A:) Rous sarcoma virus protease {Rous sarcoma virus, strain pr-C [TaxId: 11886]}

class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Retroviral protease (retropepsin)
domain: Rous sarcoma virus protease
species: Rous sarcoma virus, strain pr-C [TaxId: 11886]

Probab=97.80  E-value=1.9e-05  Score=56.45  Aligned_cols=92  Identities=13%  Similarity=0.081  Sum_probs=48.8

Q ss_pred             EEcCEeEEEEEcCCCCccccCHHHHHHcCcceecccceEEEEecCce-EeecceeeeEEEEEe----ceeEEEeEEEecC
Q 036248          194 KINNKPLSVLIDTGSTHNYLHPRLAHFLHLAIEKTMSFLVAVGNGER-IRSEGHCSKVKFEMQ----GVGFEADFHILDF  268 (301)
Q Consensus       194 ~v~~~~v~~liDsGAs~~~i~~~~~~~~~~~~~~~~~~~v~~~~g~~-~~~~~~~~~~~~~~~----~~~~~~~~~v~~~  268 (301)
                      +++|+.+.+|+||||..++|+..-+.. .++..+..+..+...+|.. +..+.....+.+...    +..+....+|.++
T Consensus        26 k~~g~~i~~LLDTGAD~TVI~~~dwp~-~Wp~~~~~~~~i~GIGg~~~v~~~~~~~~~~~~~~~~~~~~~~~~~p~V~~t  104 (124)
T d2rspa_          26 KQRSVYITALLDSGADITIISEEDWPT-DWPVMEAANPQIHGIGGGIPMRKSRDMIELGVINRDGSLERPLLLFPAVAMV  104 (124)
T ss_dssp             SCSEEEEEEEECTTCSSCEEETTTSCT-TSCEEECC---------CCCEEEESSCEEEEEECTTSCBCCCEEECCEEESC
T ss_pred             eeCCEEEEEEEcCCCCeEEEcCCccCC-CCccCCCCCCEEEEcCCceeeEEeeeeEEEeeEecCCceeeeEEEecCCCCC
Confidence            457788999999999999998875433 3344433444454444432 222222222333321    2333444444432


Q ss_pred             CCCcEEecHHHHhhcCCeEee
Q 036248          269 SRADAVLGVQWLEKLGKIITD  289 (301)
Q Consensus       269 ~~~d~ILG~dwL~~~~~i~id  289 (301)
                       .+ =|+|+|.|.+++. .+.
T Consensus       105 -Pv-ni~GRdiL~qlG~-tLt  122 (124)
T d2rspa_         105 -RG-SILGRDCLQGLGL-RLT  122 (124)
T ss_dssp             -SS-EEECHHHHHHTTC-EEE
T ss_pred             -cc-cEECHhHHHHhCC-EEe
Confidence             22 4899999999995 553

>d2pmaa1 b.50.1.3 (A:26-166) Uncharacterized protein LPG0085 {Legionella pneumophila [TaxId: 446]}

class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: LPG0085-like
domain: Uncharacterized protein LPG0085
species: Legionella pneumophila [TaxId: 446]

Probab=97.53  E-value=0.00014  Score=53.49  Aligned_cols=44  Identities=7%  Similarity=-0.003  Sum_probs=37.3

Q ss_pred             eeeEEEEEeceeEEEeEEEecCC--CCcEEecHHHHhhcCCeEeecc
Q 036248          247 CSKVKFEMQGVGFEADFHILDFS--RADAVLGVQWLEKLGKIITDHK  291 (301)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~v~~~~--~~d~ILG~dwL~~~~~i~id~~  291 (301)
                      +..+.+.+++..+.++|...+-+  .|+|+||+.||...+ +.||=.
T Consensus        90 vV~~~i~ig~~~~~ie~tL~dR~~m~yp~LiGR~~L~~~~-~~VD~s  135 (141)
T d2pmaa1          90 VVLLNIKLGDKVRTIKVNLTNRKRFLYPLLLGRDAIIDFN-GAVDPA  135 (141)
T ss_dssp             EEEEEEEETTEEEEEEEEEECCCCCSCSEEECHHHHHHTT-EEEETT
T ss_pred             EEEEEEEECCEEEEEEEEECCCCCCCCCEEECHHHHhcCC-EEECCc
Confidence            34678899999999999999965  599999999999998 478844

>d1hvca_ b.50.1.1 (A:) Human immunodeficiency virus type 1 protease {Human immunodeficiency virus type 1 [TaxId: 11676]}

class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Retroviral protease (retropepsin)
domain: Human immunodeficiency virus type 1 protease
species: Human immunodeficiency virus type 1 [TaxId: 11676]

Probab=96.88  E-value=0.0082  Score=45.06  Aligned_cols=90  Identities=17%  Similarity=0.202  Sum_probs=66.6

Q ss_pred             EEEEEEcCEeEEEEEcCCCCccccCHHHHHHcCcceecccceEEEEecCceEeecceeeeEEEEEeceeEEEeEEEecCC
Q 036248          190 QLSAKINNKPLSVLIDTGSTHNYLHPRLAHFLHLAIEKTMSFLVAVGNGERIRSEGHCSKVKFEMQGVGFEADFHILDFS  269 (301)
Q Consensus       190 ~i~~~v~~~~v~~liDsGAs~~~i~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  269 (301)
                      .+.++|.|+...||+||||.-+++.     ...|+-. .+|..+..- |+-+++.. ...+.+.+.|+.....++|-|. 
T Consensus       114 ~vt~ki~gq~~ealldtgaddtv~e-----~~~lpgr-wkpk~iggi-ggfikvrq-y~~v~iei~g~k~~gtvlvgpt-  184 (203)
T d1hvca_         114 LVTIKIGGQLKEALLDTGADDTVLE-----EMSLPGR-WKPKMIGGI-GGFIKVRQ-YDQILIEICGHKAIGTVLVGPT-  184 (203)
T ss_dssp             EEEEEETTEEEEEEECTTCSSCEEE-----SCCCSSC-CEEEEEEET-TEEEEEEE-EEEEEEEETTEEEEEEEEEECC-
T ss_pred             eEEEecchhHHHHHhcccCCceEEe-----cccCCCC-CcceEEEEe-ccccceee-EccEEEEECCCEEEEEEEECCC-
Confidence            7888999999999999999999873     3455422 233444433 55555543 3579999999999999988883 


Q ss_pred             CCcEEecHHHHhhcCCeEeec
Q 036248          270 RADAVLGVQWLEKLGKIITDH  290 (301)
Q Consensus       270 ~~d~ILG~dwL~~~~~i~id~  290 (301)
                      +.+ |+|++.|.+.+. ..||
T Consensus       185 p~n-iigrn~ltq~g~-tlnf  203 (203)
T d1hvca_         185 PVN-IIGRNLLTQIGC-TLNF  203 (203)
T ss_dssp             SSC-EECHHHHTTTTC-EEEC
T ss_pred             Cce-EEcccchhhcCc-cccC
Confidence            333 689999999995 7775

>d1bxoa_ b.50.1.2 (A:) Acid protease {Fungus (Penicillium janthinellum), penicillopepsin [TaxId: 5079]}

class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Pepsin-like
domain: Acid protease
species: Fungus (Penicillium janthinellum), penicillopepsin [TaxId: 5079]

Probab=95.30  E-value=0.016  Score=47.86  Aligned_cols=100  Identities=15%  Similarity=0.135  Sum_probs=58.8

Q ss_pred             EEcCE---eEEEEEcCCCCccccCHHHHHHcCcceecccceEEEEec-Cce-EeecceeeeEEEEEeceeEEEe------
Q 036248          194 KINNK---PLSVLIDTGSTHNYLHPRLAHFLHLAIEKTMSFLVAVGN-GER-IRSEGHCSKVKFEMQGVGFEAD------  262 (301)
Q Consensus       194 ~v~~~---~v~~liDsGAs~~~i~~~~~~~~~~~~~~~~~~~v~~~~-g~~-~~~~~~~~~~~~~~~~~~~~~~------  262 (301)
                      .|++.   ...++||||.+...+..+.+.++--....   . ....+ +.. ..+....+.+.+.++|..+.+.      
T Consensus       199 ~v~~~~~~~~~aiiDSGTs~~~lp~~~~~~l~~~i~~---~-~~~~~~~~~~~~c~~~~p~itf~f~g~~~~i~~~~~~~  274 (323)
T d1bxoa_         199 TAGSQSGDGFSGIADTGTTLLLLDDSVVSQYYSQVSG---A-QQDSNAGGYVFDCSTNLPDFSVSISGYTATVPGSLINY  274 (323)
T ss_dssp             EETTEEEEEEEEEECTTCSSEEECHHHHHHHHTTSTT---C-EEETTTTEEEECTTCCCCCEEEEETTEEEEECHHHHEE
T ss_pred             EECCEecCCcceEEecccccccCCHHHHHHHHHHhCC---c-cccCCCCcEEEeccCCCCcEEEEECCEEEEEChHHeEE
Confidence            45543   45799999999999999999887321110   0 00000 100 0111122345555555544321      


Q ss_pred             ----------EEEecCCCCc-EEecHHHHhhcCCeEeeccceEEEEE
Q 036248          263 ----------FHILDFSRAD-AVLGVQWLEKLGKIITDHKALTMEFT  298 (301)
Q Consensus       263 ----------~~v~~~~~~d-~ILG~dwL~~~~~i~id~~~~~~~~~  298 (301)
                                +.+.+..+.+ .|||.+||+.+-. ..|+.+++|.|.
T Consensus       275 ~~~~~~~~C~~~i~~~~~~~~~ILG~~flr~~y~-vfD~~~~~IGfA  320 (323)
T d1bxoa_         275 GPSGDGSTCLGGIQSNSGIGFSIFGDIFLKSQYV-VFDSDGPQLGFA  320 (323)
T ss_dssp             EECSSSSCEEESEEECTTCSSEEECHHHHTTEEE-EEETTTTEEEEE
T ss_pred             EEcCCCCEEEEEEECCCCCCcEEECHHHhCCEEE-EEECCCCEEeEE
Confidence                      1122333334 6999999999995 899999999885

>d1wkra_ b.50.1.2 (A:) Acid protease {Irpex lacteus (Polyporus tulipiferae), Polyporopepsin [TaxId: 5319]}

class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Pepsin-like
domain: Acid protease
species: Irpex lacteus (Polyporus tulipiferae), Polyporopepsin [TaxId: 5319]

Probab=95.10  E-value=0.02  Score=47.73  Aligned_cols=94  Identities=17%  Similarity=0.213  Sum_probs=57.5

Q ss_pred             EEEEEcCCCCccccCHHHHHHcCcceecccceEEEEecCce-Eeec--ceeeeEEEEEeceeEEEeE-------------
Q 036248          200 LSVLIDTGSTHNYLHPRLAHFLHLAIEKTMSFLVAVGNGER-IRSE--GHCSKVKFEMQGVGFEADF-------------  263 (301)
Q Consensus       200 v~~liDsGAs~~~i~~~~~~~~~~~~~~~~~~~v~~~~g~~-~~~~--~~~~~~~~~~~~~~~~~~~-------------  263 (301)
                      ..|+||||++..++..+++..+.-...    ......+|.. +.+.  ...+.+.+.++|..+.+..             
T Consensus       207 ~~aiiDSGtt~~~lP~~~~~~l~~~~~----~~~~~~~~~~~~~c~~~~~~P~i~f~f~g~~~~i~~~~yi~~~~~~~~~  282 (340)
T d1wkra_         207 TAGIVDTGTTLTLIASDAFAKYKKATG----AVADNNTGLLRLTTAQYANLQSLFFTIGGQTFELTANAQIWPRNLNTAI  282 (340)
T ss_dssp             EEEEECTTBCSEEECHHHHHHHHHHHT----CEECTTTSSEEECHHHHHTCCCEEEEETTEEEEECTGGGBCCGGGGGGG
T ss_pred             cceEEecCCccEeccHHHHHHHHHHhC----ccccCCceEEEEeccccCCCCceEEEECCEEEEEChHHeEeeccCceee
Confidence            458999999999999988877642211    0000011111 1111  1224577777777665431             


Q ss_pred             -----------EEecC---CCCcEEecHHHHhhcCCeEeeccceEEEEE
Q 036248          264 -----------HILDF---SRADAVLGVQWLEKLGKIITDHKALTMEFT  298 (301)
Q Consensus       264 -----------~v~~~---~~~d~ILG~dwL~~~~~i~id~~~~~~~~~  298 (301)
                                 .....   ....+|||..||+.+-. ..|..+++|.|.
T Consensus       283 ~~~~~~~~~~~~~~~~~~~~~~~~ILG~~fl~~~yv-vfD~~~~~iGfA  330 (340)
T d1wkra_         283 GGSASSVYLIVGDLGSDSGEGLDFINGLTFLERFYS-VYDTTNKRLGLA  330 (340)
T ss_dssp             TCCSSCEEBCEEECSSCTTSSCCEEECHHHHTSEEE-EEETTTTEEEEE
T ss_pred             cCccceEEEEEecccCCCCCCCCEEechHHhCCEEE-EEECCCCEEEEE
Confidence                       11111   12467999999999994 799999999984

>d1izea_ b.50.1.2 (A:) Acid protease {Fungus (Aspergillus oryzae) [TaxId: 5062]}

class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Pepsin-like
domain: Acid protease
species: Fungus (Aspergillus oryzae) [TaxId: 5062]

Probab=95.03  E-value=0.031  Score=46.02  Aligned_cols=101  Identities=14%  Similarity=0.121  Sum_probs=59.2

Q ss_pred             EEcCE----eEEEEEcCCCCccccCHHHHHHcCcceecccceEEEEecCce-EeecceeeeEEEEEeceeEEEe------
Q 036248          194 KINNK----PLSVLIDTGSTHNYLHPRLAHFLHLAIEKTMSFLVAVGNGER-IRSEGHCSKVKFEMQGVGFEAD------  262 (301)
Q Consensus       194 ~v~~~----~v~~liDsGAs~~~i~~~~~~~~~~~~~~~~~~~v~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~------  262 (301)
                      .|++.    ...++||||.+..++..+.+..+--...   ........+.. ..+....+.+.+.++|..+.+.      
T Consensus       199 ~v~~~~~~~~~~~ivDSGts~~~lp~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~p~i~f~f~g~~~~ip~~~~~~  275 (323)
T d1izea_         199 SIGSDSSSDSITGIADTGTTLLLLDDSIVDAYYEQVN---GASYDSSQGGYVFPSSASLPDFSVTIGDYTATVPGEYISF  275 (323)
T ss_dssp             EETTEEECCCEEEEECTTCCSEEECHHHHHHHHTTST---TCEEETTTTEEEEETTCCCCCEEEEETTEEEEECHHHHEE
T ss_pred             EECCCccccCceEEeccCCccccCCHHHHHHHHHHcC---CccccCCCCcEEeecccCCceEEEEECCEEEEcChHHEEE
Confidence            55554    4579999999999999998887632211   01111111111 1111122345555555544321      


Q ss_pred             ---------EEEecCCC-CcEEecHHHHhhcCCeEeeccceEEEEE
Q 036248          263 ---------FHILDFSR-ADAVLGVQWLEKLGKIITDHKALTMEFT  298 (301)
Q Consensus       263 ---------~~v~~~~~-~d~ILG~dwL~~~~~i~id~~~~~~~~~  298 (301)
                               +.+.+..+ -..|||.+||+.+-. ..|+.+++|.|.
T Consensus       276 ~~~~~~~C~~~i~~~~~~~~~iLG~~flr~~y~-vfD~~~~~IGfA  320 (323)
T d1izea_         276 ADVGNGQTFGGIQSNSGIGFSIFGDVFLKSQYV-VFDASGPRLGFA  320 (323)
T ss_dssp             EECSTTEEEESEEECTTTSSEEECHHHHTTEEE-EEETTTTEEEEE
T ss_pred             EeCCCCEEEEEEECCCCCCCEEECHHHhCCEEE-EEECCCCEEEEc
Confidence                     11222223 336999999999995 899999999885

>d1qrjb1 a.28.3.1 (B:131-214) HTLV-I capsid protein {Human T-cell leukemia virus type 1 [TaxId: 11908]}

class: All alpha proteins
fold: Acyl carrier protein-like
superfamily: Retrovirus capsid dimerization domain-like
family: Retrovirus capsid protein C-terminal domain
domain: HTLV-I capsid protein
species: Human T-cell leukemia virus type 1 [TaxId: 11908]

Probab=95.02  E-value=0.041  Score=35.81  Aligned_cols=64  Identities=13%  Similarity=0.053  Sum_probs=51.2

Q ss_pred             HhcCcc--cccHHHHHHHHHHHHHHhhc---CCHHHHHHHHHhcCCHHHHHhcccC--CCCcHHHHHHHHH
Q 036248           39 LFKLTQ--TSSVEAYQSTFENICNRVTN---LHPDAILDCFISGLKPTIQNELAIH--KPSNLRDAIALAK  102 (301)
Q Consensus        39 l~~lkQ--~~sv~~Y~~~f~~L~~~~~~---~~e~~~~~~f~~GL~~~i~~~l~~~--~p~tl~~~~~~A~  102 (301)
                      |..++|  .|+..+|++||.+-+.+...   .....+....++.=+++.|..|+..  ...+|++.+..+.
T Consensus         3 ~~~IkQGpkEpf~dfVdRl~~a~~~~~~~~~~k~~l~~~L~~qNANpdCk~~lr~l~~~~~tlee~~~aC~   73 (84)
T d1qrjb1           3 WASILQGLEEPYHAFVERLNIALDNGLPEGTPKDPILRSLAYSNANKECQKLLQARGHTNSPLGDMLRACQ   73 (84)
T ss_dssp             GGGCCBCTTSCHHHHHHHHHHHHHTTCCTTSCCHHHHHHHHTTTBCHHHHHHHHHTTCSSSCHHHHHHHHT
T ss_pred             cccCccCCCCcHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHcccHHHHHHHHhcCCCCCCHHHHHHHhc
Confidence            568999  89999999999998887643   4666788888888999999999743  3567999876654

>d1eaga_ b.50.1.2 (A:) Acid protease {Yeast (Candida albicans) [TaxId: 5476]}

class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Pepsin-like
domain: Acid protease
species: Yeast (Candida albicans) [TaxId: 5476]

Probab=94.70  E-value=0.019  Score=47.96  Aligned_cols=24  Identities=17%  Similarity=0.261  Sum_probs=22.1

Q ss_pred             EecHHHHhhcCCeEeeccceEEEEE
Q 036248          274 VLGVQWLEKLGKIITDHKALTMEFT  298 (301)
Q Consensus       274 ILG~dwL~~~~~i~id~~~~~~~~~  298 (301)
                      |||.+||+.+-. ..|+.+++|.|.
T Consensus       305 ILG~~fl~~~y~-vfD~~~~~iGfA  328 (342)
T d1eaga_         305 ILGDNFLRSAYI-VYDLDDNEISLA  328 (342)
T ss_dssp             EECHHHHTTEEE-EEETTTTEEEEE
T ss_pred             EECHHhhCcEEE-EEECCCCEEEEE
Confidence            899999999995 899999999984

>d1am5a_ b.50.1.2 (A:) Pepsin(ogen) {Atlantic cod (Gadus morhua) [TaxId: 8049]}

class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Pepsin-like
domain: Pepsin(ogen)
species: Atlantic cod (Gadus morhua) [TaxId: 8049]

Probab=94.43  E-value=0.037  Score=45.56  Aligned_cols=96  Identities=14%  Similarity=0.094  Sum_probs=55.4

Q ss_pred             EeEEEEEcCCCCccccCHHHHHHcCcceec-ccceEEEEecCceEeecceeeeEEEEEeceeEEEe--------------
Q 036248          198 KPLSVLIDTGSTHNYLHPRLAHFLHLAIEK-TMSFLVAVGNGERIRSEGHCSKVKFEMQGVGFEAD--------------  262 (301)
Q Consensus       198 ~~v~~liDsGAs~~~i~~~~~~~~~~~~~~-~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~--------------  262 (301)
                      ....++||||++...+..+.+..+--.... ...........    .....+.+.+.++|..+.+.              
T Consensus       207 ~~~~~iiDsGts~~~lp~~~~~~l~~~i~~~~~~~~~~~~~~----~~~~~P~i~f~f~g~~~~l~~~~y~~~~~~~c~~  282 (324)
T d1am5a_         207 EGCQAIVDTGTSKIVAPVSALANIMKDIGASENQGEMMGNCA----SVQSLPDITFTINGVKQPLPPSAYIEGDQAFCTS  282 (324)
T ss_dssp             CCEEEEECTTCSSEEECTTTHHHHHHHHTCEECCCCEECCTT----SSSSSCCEEEEETTEEEEECHHHHEEESSSCEEE
T ss_pred             CCcceeeccCcccccCCHHHHHHHHHHhCCcccCCccccccc----ccccCCceEEEECCEEEEECHHHhEecCCCeEEE
Confidence            345799999999999999987765211100 00000000000    01123445566666554332              


Q ss_pred             -EEEecC--C-CCcEEecHHHHhhcCCeEeeccceEEEEE
Q 036248          263 -FHILDF--S-RADAVLGVQWLEKLGKIITDHKALTMEFT  298 (301)
Q Consensus       263 -~~v~~~--~-~~d~ILG~dwL~~~~~i~id~~~~~~~~~  298 (301)
                       +...+.  . ..-.|||.+||+.+-. ..|..+++|.|.
T Consensus       283 ~i~~~~~~~~~~~~~ILG~~fl~~~y~-vfD~~~~~igfA  321 (324)
T d1am5a_         283 GLGSSGVPSNTSELWIFGDVFLRNYYT-IYDRTNNKVGFA  321 (324)
T ss_dssp             CEEECCSCCSSSCEEEECHHHHHHEEE-EEETTTTEEEEE
T ss_pred             EEEecCcCCCCCCCEEECHHhhcCEEE-EEECCCCEEEEE
Confidence             122221  1 2335899999999995 899999999885

>d2bjua1 b.50.1.2 (A:1-329) Plasmepsin (a hemoglobin-degrading enzyme) {Plasmodium falciparum, plasmepsin II [TaxId: 5833]}

class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Pepsin-like
domain: Plasmepsin (a hemoglobin-degrading enzyme)
species: Plasmodium falciparum, plasmepsin II [TaxId: 5833]

Probab=94.37  E-value=0.099  Score=42.77  Aligned_cols=94  Identities=14%  Similarity=0.260  Sum_probs=56.9

Q ss_pred             EeEEEEEcCCCCccccCHHHHHHcCccee----cccceEEEEecCceEeecceeeeEEEEEeceeEEE------------
Q 036248          198 KPLSVLIDTGSTHNYLHPRLAHFLHLAIE----KTMSFLVAVGNGERIRSEGHCSKVKFEMQGVGFEA------------  261 (301)
Q Consensus       198 ~~v~~liDsGAs~~~i~~~~~~~~~~~~~----~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~------------  261 (301)
                      ....++||||++..++..+.++++--...    .....-+...+-      ...+.+.+.+++..+..            
T Consensus       207 ~~~~~~iDSGt~~~~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~------~~~p~~~f~~~g~~~~i~p~~y~~~~~~~  280 (329)
T d2bjua1         207 EKANCIVDSGTSAITVPTDFLNKMLQNLDVIKVPFLPFYVTLCNN------SKLPTFEFTSENGKYTLEPEYYLQHIEDV  280 (329)
T ss_dssp             EEEEEEECTTCCSEEECHHHHHHHTTTSSCEECTTSSCEEEETTC------TTCCCEEEECSSCEEEECHHHHEEECTTT
T ss_pred             cCCcccccccccceeCCHHHHHHHHHHhCCeecCCCCeeEeeccc------CCCCceeEEeCCEEEEECHHHhEEEeecC
Confidence            35679999999999999999998743321    111111111110      11223444444443332            


Q ss_pred             -------eEEEecCCCCcEEecHHHHhhcCCeEeeccceEEEEE
Q 036248          262 -------DFHILDFSRADAVLGVQWLEKLGKIITDHKALTMEFT  298 (301)
Q Consensus       262 -------~~~v~~~~~~d~ILG~dwL~~~~~i~id~~~~~~~~~  298 (301)
                             .+...+......|||.+||+.+- +..|+.+++|.|.
T Consensus       281 ~~~~C~~~i~~~~~~~~~~IlG~~fl~~~y-~vfD~~~~~iGfA  323 (329)
T d2bjua1         281 GPGLCMLNIIGLDFPVPTFILGDPFMRKYF-TVFDYDNHSVGIA  323 (329)
T ss_dssp             STTEEEECEEECCCSSCEEEECHHHHHHEE-EEEETTTTEEEEE
T ss_pred             CCCEEEEEEEECCCCCCCEEEchHhhCcEE-EEEECCCCEEEEE
Confidence                   11122223345699999999999 5899999999984

>d3cmsa_ b.50.1.2 (A:) Chymosin (synonym: renin) {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Pepsin-like
domain: Chymosin (synonym: renin)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=94.21  E-value=0.031  Score=45.83  Aligned_cols=95  Identities=13%  Similarity=0.087  Sum_probs=55.7

Q ss_pred             eEEEEEcCCCCccccCHHHHHHcCcceec--ccceEEEEecCceEeecceeeeEEEEEeceeEEEe-------------E
Q 036248          199 PLSVLIDTGSTHNYLHPRLAHFLHLAIEK--TMSFLVAVGNGERIRSEGHCSKVKFEMQGVGFEAD-------------F  263 (301)
Q Consensus       199 ~v~~liDsGAs~~~i~~~~~~~~~~~~~~--~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-------------~  263 (301)
                      ...++||||.+..++..+.++.+--....  ......... ..   .....+.+.+.++|..+...             +
T Consensus       210 ~~~~iiDSGtt~~~lp~~~~~~l~~~~~~~~~~~~~~~~~-~~---~~~~~p~i~f~f~g~~~~l~~~~y~~~~~~~c~~  285 (323)
T d3cmsa_         210 GCQAILDTGTSKLVGPSSDILNIQQAIGATQNQYGEFDID-CD---NLSYMPTVVFEINGKMYPLTPSAYTSQDQGFCTS  285 (323)
T ss_dssp             CEEEEECTTCCSEEECHHHHHHHHHHHTCEEETTTEEEEC-TT---CTTTSCCEEEEETTEEEEECHHHHEEEETTEEEE
T ss_pred             CeeEEEecCcceEEecHHHHHHHHHHhCceeccCCceeEe-cc---ccCCCCeEEEEECCEEEEECHHHeEEcCCCEEEE
Confidence            35799999999999999988876322210  000000000 00   00112345555555544321             1


Q ss_pred             EEecCCC-CcEEecHHHHhhcCCeEeeccceEEEEE
Q 036248          264 HILDFSR-ADAVLGVQWLEKLGKIITDHKALTMEFT  298 (301)
Q Consensus       264 ~v~~~~~-~d~ILG~dwL~~~~~i~id~~~~~~~~~  298 (301)
                      .+.+..+ ...|||..||+.+- +..|+.+.+|.|.
T Consensus       286 ~i~~~~~~~~~iLG~~~l~~~y-vvfD~~~~~igfa  320 (323)
T d3cmsa_         286 GFQSENHSQKWILGDVFIREYY-SVFDRANNLVGLA  320 (323)
T ss_dssp             SEEEC---CCEEECHHHHTTEE-EEEETTTTEEEEE
T ss_pred             EEEeCCCCCCEEEcHHhhCcEE-EEEECCCCEEEEE
Confidence            2222333 34799999999999 5899999999884

>d1oewa_ b.50.1.2 (A:) Endothiapepsin {Chestnut blight fungus (Endothia parasitica) [TaxId: 5116]}

class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Pepsin-like
domain: Endothiapepsin
species: Chestnut blight fungus (Endothia parasitica) [TaxId: 5116]

Probab=94.07  E-value=0.062  Score=44.46  Aligned_cols=102  Identities=13%  Similarity=0.121  Sum_probs=58.0

Q ss_pred             EEcCE-----eEEEEEcCCCCccccCHHHHHHcCcceecccceEEEEecCc-eEeecceeeeEEEEEeceeEEEe-----
Q 036248          194 KINNK-----PLSVLIDTGSTHNYLHPRLAHFLHLAIEKTMSFLVAVGNGE-RIRSEGHCSKVKFEMQGVGFEAD-----  262 (301)
Q Consensus       194 ~v~~~-----~v~~liDsGAs~~~i~~~~~~~~~~~~~~~~~~~v~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~-----  262 (301)
                      .|+++     ...++||||++..++..+.++.+--....   .....-.|. .+.+....+.+.+.++|..+.+.     
T Consensus       203 ~v~~~~~~~~~~~~iiDSGts~~~lp~~~~~~i~~~~~~---~~~~~~~~~~~~~C~~~~P~i~f~f~g~~~~lp~~~~~  279 (330)
T d1oewa_         203 AVGSGTFKSTSIDGIADTGTTLLYLPATVVSAYWAQVSG---AKSSSSVGGYVFPCSATLPSFTFGVGSARIVIPGDYID  279 (330)
T ss_dssp             EETTSCCEEEEEEEEECTTCCSEEECHHHHHHHHTTSTT---CEEETTTTEEEEETTCCCCCEEEEETTEEEEECHHHHE
T ss_pred             EEEeeeeecCCcceeeccccccccCCHHHHHHHHHHccC---cccCcccceEEecccCCCCcEEEEECCEEEecCHHHee
Confidence            55553     35689999999999999988887322100   000000011 11122222345666666555431     


Q ss_pred             ----------E--EEecCCCCc-EEecHHHHhhcCCeEeec-cceEEEEEe
Q 036248          263 ----------F--HILDFSRAD-AVLGVQWLEKLGKIITDH-KALTMEFTY  299 (301)
Q Consensus       263 ----------~--~v~~~~~~d-~ILG~dwL~~~~~i~id~-~~~~~~~~~  299 (301)
                                +  .+....+.+ .|||.+||+.+-. ..|+ .+.+|.|..
T Consensus       280 ~~~~~~~~~~C~~~i~~~~~~~~~ILG~~flr~~y~-vfD~~~~~~IGfA~  329 (330)
T d1oewa_         280 FGPISTGSSSCFGGIQSSAGIGINIFGDVALKAAFV-VFNGATTPTLGFAS  329 (330)
T ss_dssp             EEESSTTCSEEEESEEESTTTSSEEECHHHHTTEEE-EEECSSSCEEEEEE
T ss_pred             EEEecCCCCEEEEEEECCCCCCCEEECHHHhCCEEE-EEECCCCCEEEEec
Confidence                      1  011222223 6899999999995 7998 455798864

>d1miqa_ b.50.1.2 (A:) Plasmepsin (a hemoglobin-degrading enzyme) {Plasmodium vivax [TaxId: 5855]}

class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Pepsin-like
domain: Plasmepsin (a hemoglobin-degrading enzyme)
species: Plasmodium vivax [TaxId: 5855]

Probab=93.97  E-value=0.11  Score=43.47  Aligned_cols=93  Identities=14%  Similarity=0.250  Sum_probs=55.1

Q ss_pred             eEEEEEcCCCCccccCHHHHHHcC----cceecccceEEEEecCceEeecceeeeEEEEEeceeEEEe------------
Q 036248          199 PLSVLIDTGSTHNYLHPRLAHFLH----LAIEKTMSFLVAVGNGERIRSEGHCSKVKFEMQGVGFEAD------------  262 (301)
Q Consensus       199 ~v~~liDsGAs~~~i~~~~~~~~~----~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~------------  262 (301)
                      ...++||||++..++..+.++.+.    .........-+...+      ....+.+.+.++|..+.+.            
T Consensus       254 ~~~~iiDTGTs~~~lP~~~~~~l~~~i~~~~~~~~~~~~~~~~------~~~~P~itf~f~g~~~~l~p~~y~~~~~~~~  327 (373)
T d1miqa_         254 KANVIVDSGTTTITAPSEFLNKFFANLNVIKVPFLPFYVTTCD------NKEMPTLEFKSANNTYTLEPEYYMNPILEVD  327 (373)
T ss_dssp             EEEEEECTTBSSEEECHHHHHHHHHHHTCEECTTSSCEEEETT------CTTCCCEEEECSSCEEEECGGGSEEESSSSS
T ss_pred             CcceEeccCCceeccCHHHHHHHHHHhCCeeccCCCeeEeccc------cCCCceEEEEECCEEEEECHHHeeEEEEeCC
Confidence            456999999999999998877752    211111111111110      0112345555555544321            


Q ss_pred             -------EEEecCCCCcEEecHHHHhhcCCeEeeccceEEEEE
Q 036248          263 -------FHILDFSRADAVLGVQWLEKLGKIITDHKALTMEFT  298 (301)
Q Consensus       263 -------~~v~~~~~~d~ILG~dwL~~~~~i~id~~~~~~~~~  298 (301)
                             |...+...--.|||.+||+.+-. ..|..+.+|.|.
T Consensus       328 ~~~C~~~~~~~~~~~~~~ILG~~fl~~~y~-vfD~~~~rIGfA  369 (373)
T d1miqa_         328 DTLCMITMLPVDIDSNTFILGDPFMRKYFT-VFDYDKESVGFA  369 (373)
T ss_dssp             CSEEEESEEECCSSSSEEEECHHHHHHEEE-EEETTTTEEEEE
T ss_pred             CCEEEEEEEECCCCCCCEEEcHHhhCcEEE-EEECCCCEEEEE
Confidence                   11222222346999999999995 799999999885

>d1j71a_ b.50.1.2 (A:) Acid protease {Yeast (Candida tropicalis) [TaxId: 5482]}

class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Pepsin-like
domain: Acid protease
species: Yeast (Candida tropicalis) [TaxId: 5482]

Probab=93.93  E-value=0.14  Score=42.30  Aligned_cols=99  Identities=15%  Similarity=0.245  Sum_probs=54.8

Q ss_pred             EEcCEeE----EEEEcCCCCccccCHHHHHHcC----ccee------------cccceEEEEecCceEeecceeeeEEEE
Q 036248          194 KINNKPL----SVLIDTGSTHNYLHPRLAHFLH----LAIE------------KTMSFLVAVGNGERIRSEGHCSKVKFE  253 (301)
Q Consensus       194 ~v~~~~v----~~liDsGAs~~~i~~~~~~~~~----~~~~------------~~~~~~v~~~~g~~~~~~~~~~~~~~~  253 (301)
                      .|+|..+    .|+||||++..++..+.++++-    ....            ....+.+.+.+|..+.+...  ..-+.
T Consensus       203 ~v~g~~~~~~~~aiiDSGt~~~~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~p~i~f~f~~g~~~~i~~~--~y~~~  280 (334)
T d1j71a_         203 NFDGTSVSTNADVVLDSGTTITYFSQSTADKFARIVGATWDSRNEIYRLPSCDLSGDAVFNFDQGVKITVPLS--ELILK  280 (334)
T ss_dssp             EETTEEEEEEEEEEECTTCSSEEECHHHHHHHHHHHTCEEETTTTEEECSSSCCCSEEEEEESTTCEEEEEGG--GGEEE
T ss_pred             EECCEEecccccccccCCCcceeccHHHHHHHHHHhCCEEcCCCCeeeccccccCCCceEEeCCCEEEEEChH--HeEEe
Confidence            6777644    5999999999999999888762    1110            11122333333322222211  01011


Q ss_pred             EeceeEEEeEEEecCCCCcEEecHHHHhhcCCeEeeccceEEEEE
Q 036248          254 MQGVGFEADFHILDFSRADAVLGVQWLEKLGKIITDHKALTMEFT  298 (301)
Q Consensus       254 ~~~~~~~~~~~v~~~~~~d~ILG~dwL~~~~~i~id~~~~~~~~~  298 (301)
                      ..+... .-+.+.. .+ ..|||.+||+.+-. ..|+.+++|.|.
T Consensus       281 ~~~~~~-C~~~i~~-~~-~~ILG~~fl~~~y~-vfD~~n~~iGfA  321 (334)
T d1j71a_         281 DSDSSI-CYFGISR-ND-ANILGDNFLRRAYI-VYDLDDKTISLA  321 (334)
T ss_dssp             CSSSSC-EEESEEE-CT-TCEECHHHHTTEEE-EEETTTTEEEEE
T ss_pred             cCCCCE-EEEEecC-CC-CcEECHHhhCcEEE-EEECCCCEEEEE
Confidence            111000 0011111 11 35899999999995 899999999984

>d1a8oa_ a.28.3.1 (A:) HIV capsid protein, dimerisation domain {Human immunodeficiency virus type 1 [TaxId: 11676]}

class: All alpha proteins
fold: Acyl carrier protein-like
superfamily: Retrovirus capsid dimerization domain-like
family: Retrovirus capsid protein C-terminal domain
domain: HIV capsid protein, dimerisation domain
species: Human immunodeficiency virus type 1 [TaxId: 11676]

Probab=93.61  E-value=0.057  Score=33.84  Aligned_cols=61  Identities=11%  Similarity=0.163  Sum_probs=46.3

Q ss_pred             cCcc--cccHHHHHHHHHHHHHHhhcC---CHHHHHHHHHhcCCHHHHHhcccCCC-CcHHHHHHHH
Q 036248           41 KLTQ--TSSVEAYQSTFENICNRVTNL---HPDAILDCFISGLKPTIQNELAIHKP-SNLRDAIALA  101 (301)
Q Consensus        41 ~lkQ--~~sv~~Y~~~f~~L~~~~~~~---~e~~~~~~f~~GL~~~i~~~l~~~~p-~tl~~~~~~A  101 (301)
                      .+||  .|+..+|++||...+.....-   .........+..-+++.+..++.-.| .||++.+..+
T Consensus         2 dIkQgpkEpf~dfV~Rl~~~~~~~~~~~~~k~~~~~~l~~~nANpdCk~ilr~l~~~~tLeemm~aC   68 (70)
T d1a8oa_           2 DIRQGPKEPFRDYVDRFYKTLRAEQASQEVKNWMTETLLVQNANPDCKTILKALGPGATLEEMMTAC   68 (70)
T ss_dssp             CCCCCTTSCHHHHHHHHHHHHHTTTCCHHHHHHHHHTHHHHTSCHHHHHHHHTTCTTCCHHHHHHHT
T ss_pred             CCccCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHhhCCHHHHHHHHccCCCCCHHHHHHhc
Confidence            5789  899999999999988887532   23355667778889999999876544 5798877654

>d2eiaa1 a.28.3.1 (A:148-222) EIAV capsid protein p26 {Equine infectious anemia virus [TaxId: 11665]}

class: All alpha proteins
fold: Acyl carrier protein-like
superfamily: Retrovirus capsid dimerization domain-like
family: Retrovirus capsid protein C-terminal domain
domain: EIAV capsid protein p26
species: Equine infectious anemia virus [TaxId: 11665]

Probab=93.08  E-value=0.06  Score=34.22  Aligned_cols=63  Identities=6%  Similarity=-0.018  Sum_probs=48.4

Q ss_pred             HhcCcc--cccHHHHHHHHHHHHHHhhcC---CHHHHHHHHHhcCCHHHHHhcccC-CCCcHHHHHHHH
Q 036248           39 LFKLTQ--TSSVEAYQSTFENICNRVTNL---HPDAILDCFISGLKPTIQNELAIH-KPSNLRDAIALA  101 (301)
Q Consensus        39 l~~lkQ--~~sv~~Y~~~f~~L~~~~~~~---~e~~~~~~f~~GL~~~i~~~l~~~-~p~tl~~~~~~A  101 (301)
                      +..+||  .|+..+|++||..-+......   .........+..-+++.|..|+.- ...||++.+..+
T Consensus         3 ~~dIkQGpkEpf~dfVdRl~~a~~~~~~~~~~k~~~~~~L~~qNANpdCk~iLr~l~~~~tLeemm~aC   71 (75)
T d2eiaa1           3 AQNIRQGAKEPYPEFVDRLLSQIKSEGHPQEISKFLTDTLTIQNANEECRNAMRHLRPEDTLEEKMYAC   71 (75)
T ss_dssp             STTCCCCTTCCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTSCTTTTTTTTTCCTTSCHHHHHHHT
T ss_pred             ccccccCCCCCHHHHHHHHHHHHHhhcCcHhHHHHHHHHHhHhcCCHHHHHHHHhcCCCCCHHHHHHHh
Confidence            457899  899999999999988887532   344556667778899999988763 567899888654

>d1t6ex_ b.50.1.2 (X:) Xylanase inhibitor TAXI-I {Wheat (Triticum aestivum) [TaxId: 4565]}

class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Pepsin-like
domain: Xylanase inhibitor TAXI-I
species: Wheat (Triticum aestivum) [TaxId: 4565]

Probab=92.95  E-value=0.21  Score=41.77  Aligned_cols=27  Identities=19%  Similarity=0.218  Sum_probs=24.3

Q ss_pred             CcEEecHHHHhhcCCeEeeccceEEEEE
Q 036248          271 ADAVLGVQWLEKLGKIITDHKALTMEFT  298 (301)
Q Consensus       271 ~d~ILG~dwL~~~~~i~id~~~~~~~~~  298 (301)
                      ...|||..||+.+-. ..|..+++|.|.
T Consensus       344 ~~~ILG~~flr~~y~-vfD~~~~~IGfA  370 (381)
T d1t6ex_         344 PAVILGGAQMEDFVL-DFDMEKKRLGFS  370 (381)
T ss_dssp             CSEEECHHHHTTEEE-EEETTTTEEEEE
T ss_pred             CcEEECHHHhCcEEE-EEECCCCEEEEE
Confidence            568999999999995 799999999885

>d1smra_ b.50.1.2 (A:) Chymosin (synonym: renin) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Pepsin-like
domain: Chymosin (synonym: renin)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.94  E-value=0.098  Score=43.08  Aligned_cols=93  Identities=18%  Similarity=0.301  Sum_probs=55.2

Q ss_pred             eEEEEEcCCCCccccCHHHHHHcCcce----ecccceEEEEecCceEeecceeeeEEEEEeceeEEEeE-----------
Q 036248          199 PLSVLIDTGSTHNYLHPRLAHFLHLAI----EKTMSFLVAVGNGERIRSEGHCSKVKFEMQGVGFEADF-----------  263 (301)
Q Consensus       199 ~v~~liDsGAs~~~i~~~~~~~~~~~~----~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~-----------  263 (301)
                      ...++||||++..++..+.++.+.-..    .......+.   ..   .....+.+.+.++|..+.+..           
T Consensus       214 ~~~~iiDSGtt~~~lp~~~~~~l~~~~~~~~~~~~~~~~~---c~---~~~~~P~i~f~f~g~~~~l~~~~y~~~~~~~~  287 (335)
T d1smra_         214 GCEVVVDTGSSFISAPTSSLKLIMQALGAKEKRLHEYVVS---CS---QVPTLPDISFNLGGRAYTLSSTDYVLQYPNRR  287 (335)
T ss_dssp             CEEEEECTTBSSEEECHHHHHHHHHHHTCEEEETTEEEEE---GG---GGGGSCCEEEEETTEEEEECHHHHBTT----C
T ss_pred             CceEEEeCCCCcccCCHHHHHHHHHHhCCeeccCCceeec---cc---ccCCCCccEEEECCeEEEEChHHeEEEeccCC
Confidence            357999999999999999888873211    100000000   00   001123455555655544321           


Q ss_pred             --------EEecC---CCCcEEecHHHHhhcCCeEeeccceEEEEE
Q 036248          264 --------HILDF---SRADAVLGVQWLEKLGKIITDHKALTMEFT  298 (301)
Q Consensus       264 --------~v~~~---~~~d~ILG~dwL~~~~~i~id~~~~~~~~~  298 (301)
                              ...+.   .+--.|||..||+.+-. ..|+.+.+|.|.
T Consensus       288 ~~~C~~~~~~~~~~~~~~~~~ILG~~fl~~~yv-vfD~~~~~iGfA  332 (335)
T d1smra_         288 DKLCTVALHAMDIPPPTGPVWVLGATFIRKFYT-EFDRHNNRIGFA  332 (335)
T ss_dssp             CCEEEBSEEECCCCTTTCSCEEECHHHHTTEEE-EEETTTTEEEEE
T ss_pred             CCEEEEEEEecCcCCCCCCcEEECHHHhCcEEE-EEECCCCEEEEE
Confidence                    11111   11236999999999994 799999999885

>d1dpja_ b.50.1.2 (A:) Acid protease {Baker's yeast (Saccharomyces cerevisiae), proteinase A [TaxId: 4932]}

class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Pepsin-like
domain: Acid protease
species: Baker's yeast (Saccharomyces cerevisiae), proteinase A [TaxId: 4932]

Probab=92.61  E-value=0.21  Score=40.72  Aligned_cols=98  Identities=20%  Similarity=0.291  Sum_probs=57.3

Q ss_pred             EEcCEe-----EEEEEcCCCCccccCHHHHHHcCccee----cccceEEEEecCceEeecceeeeEEEEEeceeEEEe--
Q 036248          194 KINNKP-----LSVLIDTGSTHNYLHPRLAHFLHLAIE----KTMSFLVAVGNGERIRSEGHCSKVKFEMQGVGFEAD--  262 (301)
Q Consensus       194 ~v~~~~-----v~~liDsGAs~~~i~~~~~~~~~~~~~----~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~--  262 (301)
                      .|+++.     ..++||||++..++..+.++.+.-...    ......+.   ..   .....+.+.+.++|..+...  
T Consensus       202 ~v~~~~~~~~~~~~iiDSGts~~~lp~~~~~~l~~~~~~~~~~~~~~~~~---c~---~~~~~P~i~f~f~g~~~~l~p~  275 (329)
T d1dpja_         202 GLGDEYAELESHGAAIDTGTSLITLPSGLAEMINAEIGAKKGWTGQYTLD---CN---TRDNLPDLIFNFNGYNFTIGPY  275 (329)
T ss_dssp             EETTEEEECSSCEEEECTTCSCEEECHHHHHHHHHHHTCEECTTSSEEEC---GG---GGGGCCCEEEEETTEEEEECTT
T ss_pred             EECCeEeeeeecccccCcccceeeCCHHHHHHHHHHhCCccccceeEEEe---cc---ccCccceEEEEECCEEEEECHH
Confidence            556543     358999999999999998888632221    00111110   00   00112345555555544321  


Q ss_pred             -------------EEEecCC--C-CcEEecHHHHhhcCCeEeeccceEEEEE
Q 036248          263 -------------FHILDFS--R-ADAVLGVQWLEKLGKIITDHKALTMEFT  298 (301)
Q Consensus       263 -------------~~v~~~~--~-~d~ILG~dwL~~~~~i~id~~~~~~~~~  298 (301)
                                   |...+..  . --.|||..||+.+-. ..|+.+++|.|.
T Consensus       276 ~y~~~~~~~c~~~~~~~~~~~~~~~~~iLG~~fl~~~y~-vfD~~~~~igfA  326 (329)
T d1dpja_         276 DYTLEVSGSCISAITPMDFPEPVGPLAIVGDAFLRKYYS-IYDLGNNAVGLA  326 (329)
T ss_dssp             TSEEEETTEEEECEEECCCCTTTCSEEEECHHHHTTEEE-EEETTTTEEEEE
T ss_pred             HeEEecCCcEEEEEEECccCCCCCCcEEEcHHhhCcEEE-EEECCCCEEEEE
Confidence                         1222211  1 226999999999995 899999999884

>d1d1da1 a.28.3.1 (A:151-230) RSV capsid protein {Rous sarcoma virus [TaxId: 11886]}

class: All alpha proteins
fold: Acyl carrier protein-like
superfamily: Retrovirus capsid dimerization domain-like
family: Retrovirus capsid protein C-terminal domain
domain: RSV capsid protein
species: Rous sarcoma virus [TaxId: 11886]

Probab=92.02  E-value=0.24  Score=31.66  Aligned_cols=67  Identities=16%  Similarity=0.208  Sum_probs=51.6

Q ss_pred             HhcCcc--cccHHHHHHHHHHHHHHhhc---CCHHHHHHHHHhcCCHHHHHhcccC--CCCcHHHHHHHHHHHH
Q 036248           39 LFKLTQ--TSSVEAYQSTFENICNRVTN---LHPDAILDCFISGLKPTIQNELAIH--KPSNLRDAIALAKLIE  105 (301)
Q Consensus        39 l~~lkQ--~~sv~~Y~~~f~~L~~~~~~---~~e~~~~~~f~~GL~~~i~~~l~~~--~p~tl~~~~~~A~~~e  105 (301)
                      +..++|  .|+..+|++||..-+..-..   .....+....++.-+++.+..|+.-  ..+++.+.+....+.+
T Consensus         3 ~t~IkQGpkEpf~dfVdRl~~al~~~~~~~~~k~~~~~~L~~qNANpdCk~iLral~~~~tl~~emi~~~~~~~   76 (80)
T d1d1da1           3 WADITQGPSESFVDFANRLIKAVEGSDLPPSARAPVIIDCFRQKSQPDIQQLIRAAPSTLTTPGEIIKYVLDRQ   76 (80)
T ss_dssp             TTSCCCCSSSCHHHHHHHHHHHHHTSSCCTTTTTHHHHHHHTTSSCHHHHHHHHTSCTTCCSTTHHHHHHHHHH
T ss_pred             ccccccCCCccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCHHHHHHHHhCCCCCCcHHHHHHHHHHHh
Confidence            457899  89999999999998877532   3566888889999999999998753  3344468887776644

>d3psga_ b.50.1.2 (A:) Pepsin(ogen) {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Pepsin-like
domain: Pepsin(ogen)
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=91.93  E-value=0.15  Score=42.74  Aligned_cols=93  Identities=15%  Similarity=0.242  Sum_probs=58.4

Q ss_pred             EEEEEcCCCCccccCHHHHHHcCcceecccceEEEEecCceE-eec--ceeeeEEEEEeceeEEEe--------------
Q 036248          200 LSVLIDTGSTHNYLHPRLAHFLHLAIEKTMSFLVAVGNGERI-RSE--GHCSKVKFEMQGVGFEAD--------------  262 (301)
Q Consensus       200 v~~liDsGAs~~~i~~~~~~~~~~~~~~~~~~~v~~~~g~~~-~~~--~~~~~~~~~~~~~~~~~~--------------  262 (301)
                      ..++||||++..++..+.+..+.-.....     ...+|... .+.  ...+++.+.++|..+.+.              
T Consensus       254 ~~aiiDSGTs~~~lp~~~~~~i~~~l~~~-----~~~~~~~~~~C~~~~~~P~l~f~f~g~~~~l~~~~yi~~~~~~c~~  328 (370)
T d3psga_         254 CQAIVDTGTSLLTGPTSAIANIQSDIGAS-----ENSDGEMVISCSSIDSLPDIVFTIDGVQYPLSPSAYILQDDDSCTS  328 (370)
T ss_dssp             EEEEECTTCCSEEEEHHHHHHHHHHTTCE-----ECTTCCEECCGGGGGGCCCEEEEETTEEEEECHHHHEEECSSCEEE
T ss_pred             ccEEEecCCceEeCCHHHHHHHHHHhCCe-----eecCCcEEEeccccCCCceEEEEECCEEEEEChHHeEEEcCCeEEE
Confidence            47999999999999999888863222100     00112211 111  123456777777766432              


Q ss_pred             -EEEecCC---CCcEEecHHHHhhcCCeEeeccceEEEEE
Q 036248          263 -FHILDFS---RADAVLGVQWLEKLGKIITDHKALTMEFT  298 (301)
Q Consensus       263 -~~v~~~~---~~d~ILG~dwL~~~~~i~id~~~~~~~~~  298 (301)
                       |..++..   +--.|||..||+.+-. ..|..+.+|.|.
T Consensus       329 ~~~~~~~~~~~~~~~ILG~~flr~~y~-vfD~~~~~IGfA  367 (370)
T d3psga_         329 GFEGMDVPTSSGELWILGDVFIRQYYT-VFDRANNKVGLA  367 (370)
T ss_dssp             SEEEECCCTTSCCEEEECHHHHTTEEE-EEETTTTEEEEE
T ss_pred             EEEEcccCCCCCCcEEECHHhhcCEEE-EEECCCCEEEEE
Confidence             2222221   2237999999999995 899999999884

>d2apra_ b.50.1.2 (A:) Acid protease {Bread mold (Rhizopus chinensis) [TaxId: 4843]}

class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Pepsin-like
domain: Acid protease
species: Bread mold (Rhizopus chinensis) [TaxId: 4843]

Probab=91.73  E-value=0.14  Score=42.04  Aligned_cols=96  Identities=14%  Similarity=0.200  Sum_probs=55.1

Q ss_pred             EEcCEe----EEEEEcCCCCccccCHHHHHHcCcce----ecccceEEEEecCceEeec-ceeeeEEEEEeceeEEEe--
Q 036248          194 KINNKP----LSVLIDTGSTHNYLHPRLAHFLHLAI----EKTMSFLVAVGNGERIRSE-GHCSKVKFEMQGVGFEAD--  262 (301)
Q Consensus       194 ~v~~~~----v~~liDsGAs~~~i~~~~~~~~~~~~----~~~~~~~v~~~~g~~~~~~-~~~~~~~~~~~~~~~~~~--  262 (301)
                      .+++..    ..++||||++..++..++++++.-..    .......+        .+. ...+.+.+.++|..+.+.  
T Consensus       203 ~i~~~~~~~~~~~iiDSGt~~~~lp~~~~~~l~~~~~~~~~~~~~~~~--------~C~~~~~p~i~f~f~g~~~~i~~~  274 (325)
T d2apra_         203 TVGTSTVASSFDGILDTGTTLLILPNNIAASVARAYGASDNGDGTYTI--------SCDTSAFKPLVFSINGASFQVSPD  274 (325)
T ss_dssp             EETTEEEECCEEEEECTTCSSEEEEHHHHHHHHHHHTCEECSSSCEEE--------CSCGGGCCCEEEEETTEEEEECGG
T ss_pred             EECCEeecceeeeeccCCCccccCCHHHHHHHHHHhCCcccCCCceee--------cccCCCCCcEEEEECCEEEEEChH
Confidence            455544    46999999999999998877762111    11000011        000 011223344444433221  


Q ss_pred             ------------EEEecCCCCcEEecHHHHhhcCCeEeeccceEEEEE
Q 036248          263 ------------FHILDFSRADAVLGVQWLEKLGKIITDHKALTMEFT  298 (301)
Q Consensus       263 ------------~~v~~~~~~d~ILG~dwL~~~~~i~id~~~~~~~~~  298 (301)
                                  +.+.+...--.|||.+||+.+-. ..|..+++|.|.
T Consensus       275 ~y~~~~~~~~C~~~i~~~~~~~~iLG~~flr~~y~-vfD~~~~~IGfA  321 (325)
T d2apra_         275 SLVFEEFQGQCIAGFGYGNWGFAIIGDTFLKNNYV-VFNQGVPEVQIA  321 (325)
T ss_dssp             GGEEEEETTEEEESEEEESSSSEEECHHHHTTEEE-EEETTTTEEEEE
T ss_pred             HeEEecCCCEEEEEEccCCCCCEEECHHHhCcEEE-EEECCCCEEeEE
Confidence                        11122222347999999999994 799999999884

>d1hrna_ b.50.1.2 (A:) Chymosin (synonym: renin) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Pepsin-like
domain: Chymosin (synonym: renin)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.57  E-value=0.14  Score=42.04  Aligned_cols=93  Identities=16%  Similarity=0.159  Sum_probs=56.4

Q ss_pred             EEEEEcCCCCccccCHHHHHHcCcceecccceEEEEecCceEeec--ceeeeEEEEEeceeEEEeE---E----------
Q 036248          200 LSVLIDTGSTHNYLHPRLAHFLHLAIEKTMSFLVAVGNGERIRSE--GHCSKVKFEMQGVGFEADF---H----------  264 (301)
Q Consensus       200 v~~liDsGAs~~~i~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~--~~~~~~~~~~~~~~~~~~~---~----------  264 (301)
                      ..++||||++..++....++.+--......     ...+-...+.  ...+.+.+.++|..+.+..   +          
T Consensus       218 ~~~iiDSGtt~~~lp~~~~~~l~~~~~~~~-----~~~~~~~~c~~~~~~P~l~f~f~g~~~~l~p~~yl~~~~~~~~~~  292 (337)
T d1hrna_         218 CLALVDTGASYISGSTSSIEKLMEALGAKK-----RLFDYVVKCNEGPTLPDISFHLGGKEYTLTSADYVFQESYSSKKL  292 (337)
T ss_dssp             EEEEECTTCSSEEECHHHHHHHHHHHTCEE-----CSSCEEEETTTGGGCCCEEEEETTEEEEECHHHHBCCCCCCTTSE
T ss_pred             cceEEeCCCcceeccHHHHHHHHHHhCCcc-----cccceeeeccccCCCCceeEEECCEEEEEChHHeEEEecCCCCCE
Confidence            469999999999999998887632221000     0001111111  1235567777777665421   1          


Q ss_pred             ----Ee--cC---CCCcEEecHHHHhhcCCeEeeccceEEEEE
Q 036248          265 ----IL--DF---SRADAVLGVQWLEKLGKIITDHKALTMEFT  298 (301)
Q Consensus       265 ----v~--~~---~~~d~ILG~dwL~~~~~i~id~~~~~~~~~  298 (301)
                          +.  +.   .+--.|||..||+.+-. ..|..+++|.|.
T Consensus       293 C~~~i~~~~~~~~~~~~~ILG~~fl~~~y~-vfD~~~~~IGfA  334 (337)
T d1hrna_         293 CTLAIHAMDIPPPTGPTWALGATFIRKFYT-EFDRRNNRIGFA  334 (337)
T ss_dssp             EEBSEEECCCCTTTCSCEEECHHHHTTEEE-EEETTTTEEEEE
T ss_pred             EEEEEEcCCcCCCCCCCEEECHHhhCCEEE-EEECCCCEEEEE
Confidence                11  10   11225999999999994 899999999884

>d1qdma2 b.50.1.2 (A:2-247,A:248-338) Plant acid proteinase, phytepsin {Barley (Hordeum vulgare) [TaxId: 4513]}

class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Pepsin-like
domain: Plant acid proteinase, phytepsin
species: Barley (Hordeum vulgare) [TaxId: 4513]

Probab=91.45  E-value=0.081  Score=43.37  Aligned_cols=93  Identities=16%  Similarity=0.159  Sum_probs=55.6

Q ss_pred             eEEEEEcCCCCccccCHHHHHHcCcce----ecccceEEEEecCceEeecceeeeEEEEEeceeEEEeE-----------
Q 036248          199 PLSVLIDTGSTHNYLHPRLAHFLHLAI----EKTMSFLVAVGNGERIRSEGHCSKVKFEMQGVGFEADF-----------  263 (301)
Q Consensus       199 ~v~~liDsGAs~~~i~~~~~~~~~~~~----~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~-----------  263 (301)
                      ...++||||.+.+.+....+..+--..    .......+..  .    .....+.+.+.++|..+.+..           
T Consensus       216 ~~~~iiDtgt~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~--~----~~~~~p~itf~f~g~~~~l~~~~~~~~~~~~~  289 (337)
T d1qdma2         216 GCAAIADSGTSLLAGPTAIITEINEKIGAAGSPMGESAVDC--G----SLGSMPDIEFTIGGKKFALKPEEYILKVGEGA  289 (337)
T ss_dssp             CEEEEECSSCCSEEECHHHHHHHHHHHTCCCCSSSCCEECG--G----GGTTCCCEEEEETTEEEEECHHHHEEECSCGG
T ss_pred             CceEEeeccCcceecchHHHHHHHHHhccccccCCcccccc--c----ccCCCCceEEEECCEEEEEChHHeEEEeccCC
Confidence            457999999999999999877753221    1111111100  0    011123455555555544311           


Q ss_pred             ----E--Eec-----CCCCcEEecHHHHhhcCCeEeeccceEEEEE
Q 036248          264 ----H--ILD-----FSRADAVLGVQWLEKLGKIITDHKALTMEFT  298 (301)
Q Consensus       264 ----~--v~~-----~~~~d~ILG~dwL~~~~~i~id~~~~~~~~~  298 (301)
                          +  +..     ..+...|||..||+.+- +..|..+++|.|.
T Consensus       290 ~~~C~~~i~~~~~~~~~~~~~IlG~~fl~~~y-~vfD~~~~~igfA  334 (337)
T d1qdma2         290 AAQCISGFTAMDIPPPRGPLWILGDVFMGPYH-TVFDYGKLRIGFA  334 (337)
T ss_dssp             GCCEEESEEECCCCTTSCSEEEECHHHHTTEE-EEEETTTTEEEEE
T ss_pred             CCEEEEEEEecCcCCCCCCcEEEhHHhhcCEE-EEEECCCCEEEEE
Confidence                1  111     12345899999999999 5899999999885

>d1mppa_ b.50.1.2 (A:) Pepsin {Mucor pusillus [TaxId: 4840]}

class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Pepsin-like
domain: Pepsin
species: Mucor pusillus [TaxId: 4840]

Probab=88.98  E-value=0.15  Score=42.35  Aligned_cols=33  Identities=15%  Similarity=0.187  Sum_probs=26.3

Q ss_pred             EecCCCCcEEecHHHHhhcCCeEeeccceEEEEE
Q 036248          265 ILDFSRADAVLGVQWLEKLGKIITDHKALTMEFT  298 (301)
Q Consensus       265 v~~~~~~d~ILG~dwL~~~~~i~id~~~~~~~~~  298 (301)
                      +.+..+-..|||.+||+.+- +..|+.+++|.|.
T Consensus       316 ~~~~~~~~~ILG~~fl~~~y-vvfD~~~~~iGfA  348 (357)
T d1mppa_         316 VLPDGGNQFIVGNLFLRFFV-NVYDFGKNRIGFA  348 (357)
T ss_dssp             EEEESSSCCEEEHHHHTTEE-EEEETTTTEEEEE
T ss_pred             EcCCCCCCEEechHHhCCEE-EEEECCCCEEEEE
Confidence            34434455699999999999 4799999999984

>d2qp8a1 b.50.1.2 (A:60-446) beta-secretase (memapsin) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Pepsin-like
domain: beta-secretase (memapsin)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.01  E-value=0.87  Score=37.94  Aligned_cols=28  Identities=18%  Similarity=0.293  Sum_probs=24.7

Q ss_pred             CCcEEecHHHHhhcCCeEeeccceEEEEE
Q 036248          270 RADAVLGVQWLEKLGKIITDHKALTMEFT  298 (301)
Q Consensus       270 ~~d~ILG~dwL~~~~~i~id~~~~~~~~~  298 (301)
                      +...|||.+||+.+-. ..|+.+++|.|.
T Consensus       330 ~~~~ILG~~Flr~~y~-vfD~~~~~IGfA  357 (387)
T d2qp8a1         330 STGTVMGAVIMEGFYV-VFDRARKRIGFA  357 (387)
T ss_dssp             SSCEEECHHHHTTEEE-EEETTTTEEEEE
T ss_pred             CCCEEEhHHhhCcEEE-EEECCCCEEEEE
Confidence            4567999999999995 799999999985