Citrus Sinensis ID: 036249

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------
Protein Sequence
MPNVNNMKFLMNVVKSTEEYYYASEWNEEEKQKGLHQGSLRFAENSRSERGRRIASAPTPPNTTPAHV
Secondary Structure (PSIPRED)
cccccccccccccccccHHHHHHHcccHHHHHHcHHHHHHHHHHHHHHcccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccEEccccccccHHHHHHHHccHHHHHccccHHHHHHHHHcccccccEccccccccccccccc
Coil and Loop (DISEMBL)
MPNVNNMKFLMNVVKSTEEYYYAsewneeekqkglhqgslrfaensrsergrriasaptppnttpahv
Flexible Loop (DISEMBL)
mpnvnnmkFLMNVVKSTEEYYYASEWNEeekqkglhqgsLRFAEnsrsergrriasaptppnttpahv
Low Complexity Region (SEG)
MPNVNNMKFLMNVVKSTEEYYYASEWNEEEKQKGLHQGSLRFAENSRSERGRRIasaptppnttpaHV
Disordered region (IsUnstruct)
*******KFLMNVVKSTEEYYYASEW******************************************
Disordered Region (DISOPRED)
MPNVNNMKFLMNVVKSTEEYYYASEWNEEEKQKGLHQGS*****************************
Disordered Region (DISEMBL)
MPNVNNMKFLMNVVKSTEEYYYASEWNE************************RIASA***********
Disordered Region (DISPRO)
***V*NMKFLMNVVKSTEEYYYASEWNEEEKQKGLHQGSLRFAEN***********************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MPNVNNMKFLMNVVKSTEEYYYASEWNEEEKQKGLHQGSLRFAENSRSERGRRIASAPTPPNTTPAHV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	68	2.2.26 [Sep-21-2011]
Q9FJH8	527	High affinity nitrate tra	yes	no	0.764	0.098	0.727	1e-18
Q9FJH7	539	High affinity nitrate tra	no	no	0.794	0.100	0.696	1e-18
O82811	530	High-affinity nitrate tra	no	no	0.808	0.103	0.690	3e-18
Q9LXH0	542	High affinity nitrate tra	no	no	0.794	0.099	0.642	4e-16
Q9LPV5	502	High affinity nitrate tra	no	no	0.647	0.087	0.613	2e-09

>sp|Q9FJH8|NRT24_ARATH High affinity nitrate transporter 2.4 OS=Arabidopsis thaliana GN=NRT2.4 PE=2 SV=1

 Score = 92.0 bits (227), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 40/55 (72%), Positives = 46/55 (83%), Gaps = 3/55 (5%)

Query: 14  VKSTEEYYYASEWNEEEKQKGLHQGSLRFAENSRSERGRRIASAPTPPNTTPAHV 68
           VKSTEEYYY  EW E EK+KG+H+GSL+FA NSRSERGRR+ASAP+PP   P HV
Sbjct: 476 VKSTEEYYYMKEWTETEKRKGMHEGSLKFAVNSRSERGRRVASAPSPP---PEHV 527

Involved in high-affinity nitrate transport. Might be involved in the transfer of nitrate from stored pools to cytoplasm.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9FJH7|NRT23_ARATH High affinity nitrate transporter 2.3 OS=Arabidopsis thaliana GN=NRT2.3 PE=1 SV=1

 Score = 91.3 bits (225), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 39/56 (69%), Positives = 47/56 (83%), Gaps = 2/56 (3%)

Query: 15  KSTEEYYYASEWNEEEKQKGLHQGSLRFAENSRSERGRRIASA--PTPPNTTPAHV 68
           +S EEYYY SEW E EKQ+GLH+GS++FAENSRSERGR++A A  PTP N TP+HV
Sbjct: 484 RSQEEYYYGSEWTENEKQQGLHEGSIKFAENSRSERGRKVALANIPTPENGTPSHV 539

Involved in high-affinity nitrate transport. Acts as a dual component transporter with NTR3.1.

Arabidopsis thaliana (taxid: 3702)

>sp|O82811|NRT21_ARATH High-affinity nitrate transporter 2.1 OS=Arabidopsis thaliana GN=NRT2.1 PE=1 SV=1

 Score = 90.5 bits (223), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 38/55 (69%), Positives = 45/55 (81%)

Query: 14  VKSTEEYYYASEWNEEEKQKGLHQGSLRFAENSRSERGRRIASAPTPPNTTPAHV 68
           VK TE +YY SEWNE+EKQK +HQGSLRFAEN++SE GRR+ SA TPP  TP +V
Sbjct: 476 VKGTEAHYYGSEWNEQEKQKNMHQGSLRFAENAKSEGGRRVRSAATPPENTPNNV 530

Involved in nitrate transport, but does not seem to be able to mediate transport by its own. Acts as a dual component transporter with NTR3.1. Acts as a repressor of lateral root initiation under high sucrose/low nitrate conditions.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LXH0|NRT26_ARATH High affinity nitrate transporter 2.6 OS=Arabidopsis thaliana GN=NRT2.6 PE=1 SV=1

 Score = 83.2 bits (204), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 36/56 (64%), Positives = 44/56 (78%), Gaps = 2/56 (3%)

Query: 15  KSTEEYYYASEWNEEEKQKGLHQGSLRFAENSRSERGRR--IASAPTPPNTTPAHV 68
           KS EE+YY +EW EEEK  GLH+GS++FAENSRSERGR+  +A  PTP   +PAHV
Sbjct: 487 KSKEEHYYGAEWTEEEKSLGLHEGSIKFAENSRSERGRKAMLADIPTPETGSPAHV 542

Involved in high-affinity nitrate transport.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LPV5|NRT25_ARATH High affinity nitrate transporter 2.5 OS=Arabidopsis thaliana GN=NRT2.5 PE=2 SV=1

 Score = 60.8 bits (146), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 27/44 (61%), Positives = 32/44 (72%)

Query: 15  KSTEEYYYASEWNEEEKQKGLHQGSLRFAENSRSERGRRIASAP 58
           K TEE YY +EWN+EEK+K LH GS +FAE S SERGR   + P
Sbjct: 457 KVTEEDYYLAEWNDEEKEKNLHIGSQKFAETSISERGRATTTHP 500

Involved in high-affinity nitrate transport. Might be involved in the transfer of nitrate from stored pools to cytoplasm.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	68
148283315	530	nitrate transporter [Citrus sinensis x C	0.838	0.107	0.964	6e-27
39573544	530	high-affinity nitrate transporter [Prunu	0.838	0.107	0.877	8e-25
38636547	530	high-affinity nitrate transporter [Prunu	0.838	0.107	0.877	8e-25
225436528	530	PREDICTED: high affinity nitrate transpo	0.838	0.107	0.824	1e-23
147836989	523	hypothetical protein VITISV_002248 [Viti	0.838	0.108	0.807	1e-23
359479449	391	PREDICTED: LOW QUALITY PROTEIN: high aff	0.838	0.145	0.807	3e-23
297734937	541	unnamed protein product [Vitis vinifera]	0.823	0.103	0.821	4e-23
223712778	530	Rehd high-affinity nitrate transporter N	0.838	0.107	0.824	5e-23
351721519	530	NRT2 protein [Glycine max] gi|3005576|gb	0.838	0.107	0.824	7e-23
255565393	530	nitrate transporter, putative [Ricinus c	0.838	0.107	0.842	2e-22

>gi|148283315|gb|ABQ57241.1| nitrate transporter [Citrus sinensis x Citrus trifoliata]

 Score =  124 bits (311), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 55/57 (96%), Positives = 56/57 (98%)

Query: 12  NVVKSTEEYYYASEWNEEEKQKGLHQGSLRFAENSRSERGRRIASAPTPPNTTPAHV 68
           +VVKSTEEYYYASEWNEEEKQKGLHQGSLRFAENSRSERGRR ASAPTPPNTTPAHV
Sbjct: 474 DVVKSTEEYYYASEWNEEEKQKGLHQGSLRFAENSRSERGRRXASAPTPPNTTPAHV 530

Source: Citrus sinensis x Citrus trifoliata

Species: Citrus sinensis x Citrus trifoliata

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|39573544|dbj|BAD04063.1| high-affinity nitrate transporter [Prunus persica] gi|48675349|dbj|BAD22822.1| nitrate transporter [Prunus persica]

 Score =  117 bits (293), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 50/57 (87%), Positives = 55/57 (96%)

Query: 12  NVVKSTEEYYYASEWNEEEKQKGLHQGSLRFAENSRSERGRRIASAPTPPNTTPAHV 68
           +VVKSTEE+YY +EWNEEEKQKGLHQ SLRFAENSRSERGRR+ASAPTPPNTTP+HV
Sbjct: 474 DVVKSTEEFYYGAEWNEEEKQKGLHQQSLRFAENSRSERGRRVASAPTPPNTTPSHV 530

Source: Prunus persica

Species: Prunus persica

Genus: Prunus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|38636547|dbj|BAD02939.1| high-affinity nitrate transporter [Prunus persica] gi|48675347|dbj|BAD22821.1| nitrate transporter [Prunus persica]

 Score =  117 bits (293), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 50/57 (87%), Positives = 55/57 (96%)

Query: 12  NVVKSTEEYYYASEWNEEEKQKGLHQGSLRFAENSRSERGRRIASAPTPPNTTPAHV 68
           +VVKSTEE+YY +EWNEEEKQKGLHQ SLRFAENSRSERGRR+ASAPTPPNTTP+HV
Sbjct: 474 DVVKSTEEFYYGAEWNEEEKQKGLHQQSLRFAENSRSERGRRVASAPTPPNTTPSHV 530

Source: Prunus persica

Species: Prunus persica

Genus: Prunus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225436528|ref|XP_002277127.1| PREDICTED: high affinity nitrate transporter 2.4 [Vitis vinifera]

 Score =  113 bits (283), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 47/57 (82%), Positives = 55/57 (96%)

Query: 12  NVVKSTEEYYYASEWNEEEKQKGLHQGSLRFAENSRSERGRRIASAPTPPNTTPAHV 68
           +VVK TEE+YY SEWNEEEKQKG+HQGSL+FAENSRSERG+R+ASAPTPPN+TP+HV
Sbjct: 474 DVVKGTEEHYYESEWNEEEKQKGMHQGSLKFAENSRSERGQRVASAPTPPNSTPSHV 530

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147836989|emb|CAN77058.1| hypothetical protein VITISV_002248 [Vitis vinifera]

 Score =  113 bits (283), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 46/57 (80%), Positives = 55/57 (96%)

Query: 12  NVVKSTEEYYYASEWNEEEKQKGLHQGSLRFAENSRSERGRRIASAPTPPNTTPAHV 68
           +V+K TEE+YY SEWNEEEKQKG+HQGSL+FAENSRSERG+R+ASAPTPPN+TP+HV
Sbjct: 467 DVIKGTEEHYYESEWNEEEKQKGMHQGSLKFAENSRSERGKRVASAPTPPNSTPSHV 523

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359479449|ref|XP_002273889.2| PREDICTED: LOW QUALITY PROTEIN: high affinity nitrate transporter 2.4-like [Vitis vinifera]

 Score =  112 bits (279), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 46/57 (80%), Positives = 55/57 (96%)

Query: 12  NVVKSTEEYYYASEWNEEEKQKGLHQGSLRFAENSRSERGRRIASAPTPPNTTPAHV 68
           +V+K TEE+YY SEWNEEEKQKG+HQGSL+FAENSRSERG+R+ASAPTPPN+TP+HV
Sbjct: 335 DVIKGTEEHYYESEWNEEEKQKGMHQGSLKFAENSRSERGKRVASAPTPPNSTPSHV 391

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297734937|emb|CBI17171.3| unnamed protein product [Vitis vinifera]

 Score =  112 bits (279), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 46/56 (82%), Positives = 54/56 (96%)

Query: 12  NVVKSTEEYYYASEWNEEEKQKGLHQGSLRFAENSRSERGRRIASAPTPPNTTPAH 67
           +VVK TEE+YY SEWNEEEKQKG+HQGSL+FAENSRSERG+R+ASAPTPPN+TP+H
Sbjct: 449 DVVKGTEEHYYESEWNEEEKQKGMHQGSLKFAENSRSERGQRVASAPTPPNSTPSH 504

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|223712778|gb|ACN22072.1| Rehd high-affinity nitrate transporter NRT2.1 [Malus hupehensis]

 Score =  111 bits (278), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 47/57 (82%), Positives = 54/57 (94%)

Query: 12  NVVKSTEEYYYASEWNEEEKQKGLHQGSLRFAENSRSERGRRIASAPTPPNTTPAHV 68
           +V KSTEE+YYA+EW+E EKQKGLHQGSL+FAENSRSERGRR+AS PTPPNTTP+HV
Sbjct: 474 DVDKSTEEFYYAAEWSEAEKQKGLHQGSLKFAENSRSERGRRVASVPTPPNTTPSHV 530

Source: Malus hupehensis

Species: Malus hupehensis

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351721519|ref|NP_001236444.1| NRT2 protein [Glycine max] gi|3005576|gb|AAC09320.1| putative high affinity nitrate transporter [Glycine max]

 Score =  110 bits (276), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 47/57 (82%), Positives = 52/57 (91%)

Query: 12  NVVKSTEEYYYASEWNEEEKQKGLHQGSLRFAENSRSERGRRIASAPTPPNTTPAHV 68
           +V KSTEE+YY SEWNEEEKQKGLHQ SL+FAENSRSERG+R+ASAPTPPN TP HV
Sbjct: 474 DVSKSTEEFYYTSEWNEEEKQKGLHQQSLKFAENSRSERGKRVASAPTPPNATPTHV 530

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255565393|ref|XP_002523687.1| nitrate transporter, putative [Ricinus communis] gi|223536991|gb|EEF38627.1| nitrate transporter, putative [Ricinus communis]

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 48/57 (84%), Positives = 52/57 (91%)

Query: 12  NVVKSTEEYYYASEWNEEEKQKGLHQGSLRFAENSRSERGRRIASAPTPPNTTPAHV 68
           + +KSTEE+YYASEWNEEEKQKGLHQ SL+FAENSRSERG RIASAPTPPNTTP  V
Sbjct: 474 DAMKSTEEFYYASEWNEEEKQKGLHQQSLKFAENSRSERGNRIASAPTPPNTTPNRV 530

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	68
TAIR|locus:2159280	527	NRT2.4 "nitrate transporter 2.	0.602	0.077	0.756	2.3e-12
TAIR|locus:2205190	530	NRT2:1 "AT1G08090" [Arabidopsi	0.602	0.077	0.731	5e-12
TAIR|locus:2159290	539	NRT2.3 "AT5G60780" [Arabidopsi	0.588	0.074	0.725	5.1e-12
TAIR|locus:2075909	542	NRT2.6 "high affinity nitrate	0.573	0.071	0.717	8e-11
TAIR|locus:2010391	502	NRT2.5 "nitrate transporter2.5	0.558	0.075	0.684	3.5e-08

TAIR|locus:2159280 NRT2.4 "nitrate transporter 2.4" [Arabidopsis thaliana (taxid:3702)]

 Score = 174 (66.3 bits), Expect = 2.3e-12, P = 2.3e-12
 Identities = 31/41 (75%), Positives = 36/41 (87%)

Query:    14 VKSTEEYYYASEWNEEEKQKGLHQGSLRFAENSRSERGRRI 54
             VKSTEEYYY  EW E EK+KG+H+GSL+FA NSRSERGRR+
Sbjct:   476 VKSTEEYYYMKEWTETEKRKGMHEGSLKFAVNSRSERGRRV 516

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0015112 "nitrate transmembrane transporter activity" evidence=IGI;ISS

GO:0071249 "cellular response to nitrate" evidence=IGI

GO:0015706 "nitrate transport" evidence=RCA

TAIR|locus:2205190 NRT2:1 "AT1G08090" [Arabidopsis thaliana (taxid:3702)]

 Score = 171 (65.3 bits), Expect = 5.0e-12, P = 5.0e-12
 Identities = 30/41 (73%), Positives = 36/41 (87%)

Query:    14 VKSTEEYYYASEWNEEEKQKGLHQGSLRFAENSRSERGRRI 54
             VK TE +YY SEWNE+EKQK +HQGSLRFAEN++SE GRR+
Sbjct:   476 VKGTEAHYYGSEWNEQEKQKNMHQGSLRFAENAKSEGGRRV 516

GO:0015112 "nitrate transmembrane transporter activity" evidence=ISS;TAS

GO:0055085 "transmembrane transport" evidence=IEA

GO:0015706 "nitrate transport" evidence=RCA;IMP

GO:0016020 "membrane" evidence=ISS

GO:0048527 "lateral root development" evidence=IMP

GO:0010167 "response to nitrate" evidence=IEP

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:2159290 NRT2.3 "AT5G60780" [Arabidopsis thaliana (taxid:3702)]

 Score = 171 (65.3 bits), Expect = 5.1e-12, P = 5.1e-12
 Identities = 29/40 (72%), Positives = 36/40 (90%)

Query:    15 KSTEEYYYASEWNEEEKQKGLHQGSLRFAENSRSERGRRI 54
             +S EEYYY SEW E EKQ+GLH+GS++FAENSRSERGR++
Sbjct:   484 RSQEEYYYGSEWTENEKQQGLHEGSIKFAENSRSERGRKV 523

GO:0015112 "nitrate transmembrane transporter activity" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0015706 "nitrate transport" evidence=RCA

TAIR|locus:2075909 NRT2.6 "high affinity nitrate transporter 2.6" [Arabidopsis thaliana (taxid:3702)]

 Score = 160 (61.4 bits), Expect = 8.0e-11, P = 8.0e-11
 Identities = 28/39 (71%), Positives = 34/39 (87%)

Query:    15 KSTEEYYYASEWNEEEKQKGLHQGSLRFAENSRSERGRR 53
             KS EE+YY +EW EEEK  GLH+GS++FAENSRSERGR+
Sbjct:   487 KSKEEHYYGAEWTEEEKSLGLHEGSIKFAENSRSERGRK 525

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0015112 "nitrate transmembrane transporter activity" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0009507 "chloroplast" evidence=IDA

GO:0080167 "response to karrikin" evidence=IEP

GO:0015706 "nitrate transport" evidence=RCA

TAIR|locus:2010391 NRT2.5 "nitrate transporter2.5" [Arabidopsis thaliana (taxid:3702)]

 Score = 135 (52.6 bits), Expect = 3.5e-08, P = 3.5e-08
 Identities = 26/38 (68%), Positives = 30/38 (78%)

Query:    15 KSTEEYYYASEWNEEEKQKGLHQGSLRFAENSRSERGR 52
             K TEE YY +EWN+EEK+K LH GS +FAE S SERGR
Sbjct:   457 KVTEEDYYLAEWNDEEKEKNLHIGSQKFAETSISERGR 494


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.312   0.127   0.362    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0       68        56   0.00091  102 3  11 23  0.36    28
                                                     29  0.42    27


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  5
  No. of states in DFA:  469 (50 KB)
  Total size of DFA:  88 KB (2067 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  8.07u 0.18s 8.25t   Elapsed:  00:00:00
  Total cpu time:  8.08u 0.18s 8.26t   Elapsed:  00:00:00
  Start:  Sat May 11 06:47:29 2013   End:  Sat May 11 06:47:29 2013

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0015112 "nitrate transmembrane transporter activity" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9FJH8	NRT24_ARATH	No assigned EC number	0.7272	0.7647	0.0986	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00022199001 SubName- Full=Chromosome chr6 scaffold_25, whole genome shotgun sequence; (525 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	68
PLN00028	476	PLN00028, PLN00028, nitrate transmembrane transpor	3e-13

>gnl|CDD|177665 PLN00028, PLN00028, nitrate transmembrane transporter; Provisional

 Score = 61.9 bits (151), Expect = 3e-13
 Identities = 23/29 (79%), Positives = 26/29 (89%)

Query: 16  STEEYYYASEWNEEEKQKGLHQGSLRFAE 44
           + EE YYASEW EEEK+KGLHQGSL+FAE
Sbjct: 448 AVEEDYYASEWTEEEKEKGLHQGSLKFAE 476

Length = 476

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	68
PLN00028	476	nitrate transmembrane transporter; Provisional	98.81

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=98.81  E-value=1.2e-09  Score=81.27  Aligned_cols=43  Identities=60%  Similarity=0.931  Sum_probs=39.3

Q ss_pred             CCCcccceeccCCCCCcchhhhhhcccHHHHhhhccchhhhHHh
Q 036249            1 MPNVNNMKFLMNVVKSTEEYYYASEWNEEEKQKGLHQGSLRFAE   44 (68)
Q Consensus         1 fPqWGgM~~~p~~~~~teE~YY~sEwt~eE~~~Glh~~s~kFA~   44 (68)
                      ||+|+.|+. ....+..+||||.++|+++++.+|+|+.++||+|
T Consensus       434 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  476 (476)
T PLN00028        434 FPQWGGMFF-GPSKDAVEEDYYASEWTEEEKEKGLHQGSLKFAE  476 (476)
T ss_pred             ccchhhhhc-CCCcccchhhhhhcccchhhhhcccccccccccC
Confidence            699999998 5556688899999999999999999999999986

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00