Citrus Sinensis ID: 036275

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-
Protein Sequence
MKKPQCTTCDLCVAQRAPHSWNFNYLPYPSHFMLINFLLLQHTPNLFVFIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKDMKTALPIYFNLYGEKGVARSNLGQYIGN
Secondary Structure (PSIPRED)
ccccccccHHHHHHcccccHHHHccccccHHHHHHHHHHccccccHHHHHHHccHHHHHHHHHHHHHccccccHHHHHHHHHHHHccccHHHHHHHHHHHHHcccccccccHHHHHHHHHccccHHHHHHHHHHHHHccccccHHHHHHHHHHHHccccHHHHHHHHHHHHHccccccHHHHHHHHHHHHccccHHHHHHHHHHHHHccccccHHHHHHHHHHHHccccHHHHHHHHHHHHHcccccHHHHHHHHHHHcHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
cccccEEEHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHccccccEEEEEccccHHHHHHHHHHHHHccccccEEEHHHHHHHHHHcccHHHHHHHHHHHHHccccccEEEHHHHHHHHHHcccHHHHHHHHHHHHHccccccEEEHHHHHHHHHHcccHHHHHHHHHHHHHccccccEEEHHHHHHHHHHcccHHHHHHHHHHHHHccccccEEHHHHHHHHHHHcccHHHHHHHHHHHHHccccccEEEHHHHHccccHHHHHHHHHcc
Coil and Loop (DISEMBL)
mkkpqcttcdlcvaqraphswnfnylpypshFMLINFLLLQHTPNLFVFIFSIYFSDAHAVFEEMKrlgitptmKSHMLLLTAYSKTGNVAKCEGVINQmhksglkpdTFVINSMLNLYGRLGQFEKMEEVLTAMEkgsyaadiSTYNILINIYGRGGFIEKMEGLfqslpakrlkpdvVTWTSRLAAYSRKKLYRRCLEIFEEMidagcypdggTAKVLISACSSEDQIEQVTTLVRTMHKDMKTALPIYFnlygekgvarsnlgqyign
Flexible Loop (DISEMBL)
MKKPQCTTCDLCVAQRAPHSWNFNYLPYPSHFMLINFLLLQHTPNLFVFIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSlpakrlkpdvvtwtsrlaaysrkkLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKDMKTALPIYFNLYGEKGVARSNLGQYIGN
Low Complexity Region (SEG)
MKKPQCTTCDLCVAQRAPHSWNFNYLPYPSHFMLINFLLLQHTPNLFVFIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKDMKTALPIYFNLYGEKGVARSNLGQYIGN
Disordered region (IsUnstruct)
*****CTTCDLCVAQRAPHSWNFNYLPYPSHFMLINFLLLQHTPNLFVFIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKDMKTALPIYFNLYGEKGVARSN*******
Disordered Region (DISOPRED)
*KKPQCTTCDLCVAQRAPHSWNFNYLPYPSHFMLINFLLLQHTPNLFVFIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKDMKTALPIYFNLYGEKGVARSNLGQYIGN
Disordered Region (DISEMBL)
MKKPQCTTCDLCVAQRAPHSWNFNYLPYPSHFMLINFLLLQHTPNLFVFIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKDMKTALPIYFNLYGEKGVARSNLGQYIGN
Disordered Region (DISPRO)
*KKPQCTTCDLCVAQRAPHSWNFNYLPYPSHFMLINFLLLQHTPNLFVFIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKDMKTALPIYFNLYGEKGVARSNLGQYIGN
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MKKPQCTTCDLCVAQRAPHSWNFNYLPYPSHFMLINFLLLQHTPNLFVFIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKDMKTALPIYFNLYGEKGVARSNLGQYIGN
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	271	2.2.26 [Sep-21-2011]
O82178	591	Pentatricopeptide repeat-	yes	no	0.675	0.309	0.716	4e-79
Q9LYZ9	819	Pentatricopeptide repeat-	no	no	0.675	0.223	0.324	4e-21
Q9S7Q2	862	Pentatricopeptide repeat-	no	no	0.642	0.201	0.273	8e-19
Q5G1S8	1440	Pentatricopeptide repeat-	no	no	0.715	0.134	0.295	1e-17
Q9LFC5	729	Pentatricopeptide repeat-	no	no	0.645	0.240	0.284	3e-17
Q3EDF8	598	Pentatricopeptide repeat-	no	no	0.712	0.322	0.234	3e-17
Q9LYT2	583	Pentatricopeptide repeat-	no	no	0.494	0.229	0.269	3e-17
Q9FGR7	723	Pentatricopeptide repeat-	no	no	0.634	0.237	0.264	4e-17
Q9SV96	563	Pentatricopeptide repeat-	no	no	0.424	0.204	0.3	7e-17
Q9SIC9	918	Pentatricopeptide repeat-	no	no	0.583	0.172	0.278	1e-16

>sp|O82178|PP186_ARATH Pentatricopeptide repeat-containing protein At2g35130 OS=Arabidopsis thaliana GN=At2g35130 PE=2 SV=1

 Score =  294 bits (753), Expect = 4e-79,   Method: Compositional matrix adjust.
 Identities = 134/187 (71%), Positives = 161/187 (86%)

Query: 56  SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
           SDA AVFEEMKRLGI PTMKSHMLLL+AYSK  +V KCE ++ +M ++G++PDTFV+NSM
Sbjct: 386 SDAEAVFEEMKRLGIAPTMKSHMLLLSAYSKARDVTKCEAIVKEMSENGVEPDTFVLNSM 445

Query: 116 LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL 175
           LNLYGRLGQF KME++L  ME G   ADISTYNILINIYG+ GF+E++E LF  L  K  
Sbjct: 446 LNLYGRLGQFTKMEKILAEMENGPCTADISTYNILINIYGKAGFLERIEELFVELKEKNF 505

Query: 176 KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTT 235
           +PDVVTWTSR+ AYSRKKLY +CLE+FEEMID+GC PDGGTAKVL+SACSSE+Q+EQVT+
Sbjct: 506 RPDVVTWTSRIGAYSRKKLYVKCLEVFEEMIDSGCAPDGGTAKVLLSACSSEEQVEQVTS 565

Query: 236 LVRTMHK 242
           ++RTMHK
Sbjct: 566 VLRTMHK 572

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LYZ9|PP362_ARATH Pentatricopeptide repeat-containing protein At5g02860 OS=Arabidopsis thaliana GN=At5g02860 PE=2 SV=1

 Score =  102 bits (253), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 60/185 (32%), Positives = 95/185 (51%), Gaps = 2/185 (1%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +A  V  EM   G +P++ ++  L++AY++ G + +   + NQM + G KPD F   ++L
Sbjct: 332 EAMKVLNEMVLNGFSPSIVTYNSLISAYARDGMLDEAMELKNQMAEKGTKPDVFTYTTLL 391

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYG-RGGFIEKMEGLFQSLPAKRL 175
           + + R G+ E    +   M       +I T+N  I +YG RG F E M+ +F  +    L
Sbjct: 392 SGFERAGKVESAMSIFEEMRNAGCKPNICTFNAFIKMYGNRGKFTEMMK-IFDEINVCGL 450

Query: 176 KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTT 235
            PD+VTW + LA + +  +      +F+EM  AG  P+  T   LISA S     EQ  T
Sbjct: 451 SPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERETFNTLISAYSRCGSFEQAMT 510

Query: 236 LVRTM 240
           + R M
Sbjct: 511 VYRRM 515

Arabidopsis thaliana (taxid: 3702)

>sp|Q9S7Q2|PP124_ARATH Pentatricopeptide repeat-containing protein At1g74850, chloroplastic OS=Arabidopsis thaliana GN=PTAC2 PE=2 SV=1

 Score = 94.4 bits (233), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 49/179 (27%), Positives = 93/179 (51%)

Query: 64  EMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLG 123
           EM   G  P + S+ +LL AY+K+G++ +  GV +QM  +G  P+    + +LNL+G+ G
Sbjct: 307 EMASGGSLPDITSYNVLLEAYAKSGSIKEAMGVFHQMQAAGCTPNANTYSVLLNLFGQSG 366

Query: 124 QFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWT 183
           +++ + ++   M+  +   D +TYNILI ++G GG+ +++  LF  +  + ++PD+ T+ 
Sbjct: 367 RYDDVRQLFLEMKSSNTDPDAATYNILIEVFGEGGYFKEVVTLFHDMVEENIEPDMETYE 426

Query: 184 SRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHK 242
             + A  +  L+    +I + M      P       +I A       E+      TMH+
Sbjct: 427 GIIFACGKGGLHEDARKILQYMTANDIVPSSKAYTGVIEAFGQAALYEEALVAFNTMHE 485

Involved in plastid gene expression.

Arabidopsis thaliana (taxid: 3702)

>sp|Q5G1S8|PP241_ARATH Pentatricopeptide repeat-containing protein At3g18110, chloroplastic OS=Arabidopsis thaliana GN=EMB1270 PE=2 SV=2

 Score = 90.5 bits (223), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 59/200 (29%), Positives = 98/200 (49%), Gaps = 6/200 (3%)

Query: 48  VFIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGV--INQMHKSGL 105
           V+  S  FS A  + + M++ G  P + S   L+ A  K+G +     V  ++ +  SGL
Sbjct: 234 VYSRSGKFSKAQELVDAMRQRGCVPDLISFNTLINARLKSGGLTPNLAVELLDMVRNSGL 293

Query: 106 KPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEG 165
           +PD    N++L+   R    +   +V   ME      D+ TYN +I++YGR G   + E 
Sbjct: 294 RPDAITYNTLLSACSRDSNLDGAVKVFEDMEAHRCQPDLWTYNAMISVYGRCGLAAEAER 353

Query: 166 LFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACS 225
           LF  L  K   PD VT+ S L A++R++   +  E++++M   G   D  T   +I    
Sbjct: 354 LFMELELKGFFPDAVTYNSLLYAFARERNTEKVKEVYQQMQKMGFGKDEMTYNTIIHMYG 413

Query: 226 SEDQIEQVTTLVRTMHKDMK 245
            + Q++    L   ++KDMK
Sbjct: 414 KQGQLD----LALQLYKDMK 429

May play a role in embryogenesis.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LFC5|PP360_ARATH Pentatricopeptide repeat-containing protein At5g01110 OS=Arabidopsis thaliana GN=At5g01110 PE=2 SV=1

 Score = 89.0 bits (219), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 50/176 (28%), Positives = 90/176 (51%), Gaps = 1/176 (0%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +AH  F  ++  G T ++ +   L+ +  + G V    GV  ++ +SG+  + + +N M+
Sbjct: 183 EAHEAFTLLRSKGFTVSIDACNALIGSLVRIGWVELAWGVYQEISRSGVGINVYTLNIMV 242

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
           N   + G+ EK+   L+ +++     DI TYN LI+ Y   G +E+   L  ++P K   
Sbjct: 243 NALCKDGKMEKVGTFLSQVQEKGVYPDIVTYNTLISAYSSKGLMEEAFELMNAMPGKGFS 302

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAK-VLISACSSEDQIE 231
           P V T+ + +    +   Y R  E+F EM+ +G  PD  T + +L+ AC   D +E
Sbjct: 303 PGVYTYNTVINGLCKHGKYERAKEVFAEMLRSGLSPDSTTYRSLLMEACKKGDVVE 358

Arabidopsis thaliana (taxid: 3702)

>sp|Q3EDF8|PPR28_ARATH Pentatricopeptide repeat-containing protein At1g09900 OS=Arabidopsis thaliana GN=At1g09900 PE=2 SV=1

 Score = 89.0 bits (219), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 46/196 (23%), Positives = 96/196 (48%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  + +EM+  G TP + ++ +L+    K G + +    +N M  SG +P+    N +L 
Sbjct: 258 AMKLLDEMRDRGCTPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSSGCQPNVITHNIILR 317

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
                G++   E++L  M +  ++  + T+NILIN   R G + +   + + +P    +P
Sbjct: 318 SMCSTGRWMDAEKLLADMLRKGFSPSVVTFNILINFLCRKGLLGRAIDILEKMPQHGCQP 377

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
           + +++   L  + ++K   R +E  E M+  GCYPD  T   +++A   + ++E    ++
Sbjct: 378 NSLSYNPLLHGFCKEKKMDRAIEYLERMVSRGCYPDIVTYNTMLTALCKDGKVEDAVEIL 437

Query: 238 RTMHKDMKTALPIYFN 253
             +     + + I +N
Sbjct: 438 NQLSSKGCSPVLITYN 453

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LYT2|PP287_ARATH Pentatricopeptide repeat-containing protein At3g59040 OS=Arabidopsis thaliana GN=At3g59040 PE=2 SV=2

 Score = 89.0 bits (219), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 55/204 (26%), Positives = 100/204 (49%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +A +VFEEM   G+ PT K++ +LL A++ +G V + + V   M +  + PD +   +ML
Sbjct: 332 EALSVFEEMLDAGVRPTHKAYNILLDAFAISGMVEQAKTVFKSMRRDRIFPDLWSYTTML 391

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
           + Y      E  E+    ++   +  +I TY  LI  Y +   +EKM  +++ +    +K
Sbjct: 392 SAYVNASDMEGAEKFFKRIKVDGFEPNIVTYGTLIKGYAKANDVEKMMEVYEKMRLSGIK 451

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
            +    T+ + A  R K +   L  ++EM   G  PD     VL+S  S++D++E+   L
Sbjct: 452 ANQTILTTIMDASGRCKNFGSALGWYKEMESCGVPPDQKAKNVLLSLASTQDELEEAKEL 511

Query: 237 VRTMHKDMKTALPIYFNLYGEKGV 260
               ++       +Y +   E+GV
Sbjct: 512 TGIRNETATIIARVYGSDDDEEGV 535

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FGR7|PP426_ARATH Pentatricopeptide repeat-containing protein At5g50280, chloroplastic OS=Arabidopsis thaliana GN=EMB1006 PE=2 SV=1

 Score = 89.0 bits (219), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 46/174 (26%), Positives = 94/174 (54%), Gaps = 2/174 (1%)

Query: 42  HTPNLFVFIFSI--YFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQ 99
           H+    +  +S+  +   A+A FEEM + GI P+++++  +L A+ ++G+  K   +   
Sbjct: 486 HSYTALIHAYSVSGWHEKAYASFEEMCKEGIKPSVETYTSVLDAFRRSGDTGKLMEIWKL 545

Query: 100 MHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGF 159
           M +  +K      N++L+ + + G + +  +V++   K      + TYN+L+N Y RGG 
Sbjct: 546 MLREKIKGTRITYNTLLDGFAKQGLYIEARDVVSEFSKMGLQPSVMTYNMLMNAYARGGQ 605

Query: 160 IEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPD 213
             K+  L + + A  LKPD +T+++ + A+ R + ++R     + M+ +G  PD
Sbjct: 606 DAKLPQLLKEMAALNLKPDSITYSTMIYAFVRVRDFKRAFFYHKMMVKSGQVPD 659

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SV96|PP358_ARATH Pentatricopeptide repeat-containing protein At4g39620, chloroplastic OS=Arabidopsis thaliana GN=EMB2453 PE=2 SV=1

 Score = 87.8 bits (216), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 45/150 (30%), Positives = 82/150 (54%)

Query: 72  PTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEV 131
           P + ++ +LL A++++G V +   +   +  S + PD +  N +++ YG+ G  ++ME V
Sbjct: 206 PNVVTYNILLRAFAQSGKVDQVNALFKDLDMSPVSPDVYTFNGVMDAYGKNGMIKEMEAV 265

Query: 132 LTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSR 191
           LT M       DI T+N+LI+ YG+    EKME  F+SL   + KP + T+ S +  Y +
Sbjct: 266 LTRMRSNECKPDIITFNVLIDSYGKKQEFEKMEQTFKSLMRSKEKPTLPTFNSMIINYGK 325

Query: 192 KKLYRRCLEIFEEMIDAGCYPDGGTAKVLI 221
            ++  +   +F++M D    P   T + +I
Sbjct: 326 ARMIDKAEWVFKKMNDMNYIPSFITYECMI 355

May play a role in embryogenesis.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SIC9|PP178_ARATH Pentatricopeptide repeat-containing protein At2g31400, chloroplastic OS=Arabidopsis thaliana GN=At2g31400 PE=2 SV=1

 Score = 87.0 bits (214), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 47/169 (27%), Positives = 91/169 (53%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
           F +A  +F EM+ LGI     S+  LL+ Y+K G   +   ++ +M   G+K D    N+
Sbjct: 425 FDEALNLFGEMRYLGIALDRVSYNTLLSIYTKVGRSEEALDILREMASVGIKKDVVTYNA 484

Query: 115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
           +L  YG+ G+++++++V T M++     ++ TY+ LI+ Y +GG  ++   +F+   +  
Sbjct: 485 LLGGYGKQGKYDEVKKVFTEMKREHVLPNLLTYSTLIDGYSKGGLYKEAMEIFREFKSAG 544

Query: 175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA 223
           L+ DVV +++ + A  +  L    + + +EM   G  P+  T   +I A
Sbjct: 545 LRADVVLYSALIDALCKNGLVGSAVSLIDEMTKEGISPNVVTYNSIIDA 593

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	271
255574497	569	pentatricopeptide repeat-containing prot	0.693	0.330	0.829	1e-92
449530353	312	PREDICTED: pentatricopeptide repeat-cont	0.693	0.602	0.798	3e-90
449455399	576	PREDICTED: pentatricopeptide repeat-cont	0.701	0.329	0.798	8e-90
225423724	587	PREDICTED: pentatricopeptide repeat-cont	0.686	0.316	0.807	1e-89
297737955	625	unnamed protein product [Vitis vinifera]	0.686	0.297	0.807	1e-89
356575482	576	PREDICTED: pentatricopeptide repeat-cont	0.697	0.328	0.779	2e-86
297826989	589	pentatricopeptide repeat-containing prot	0.619	0.285	0.703	1e-77
15226907	591	pentatricopeptide repeat-containing prot	0.675	0.309	0.716	3e-77
334184699	613	pentatricopeptide repeat-containing prot	0.675	0.298	0.716	4e-77
147779268	838	hypothetical protein VITISV_038171 [Viti	0.575	0.186	0.827	7e-76

>gi|255574497|ref|XP_002528160.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] gi|223532417|gb|EEF34211.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis]

 Score =  345 bits (885), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 161/194 (82%), Positives = 179/194 (92%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           DA AVFEEMKRLGITPTMKSHMLLL+AYSK G+VAKCE ++N++H+SGL+PDTFV+NSML
Sbjct: 376 DAQAVFEEMKRLGITPTMKSHMLLLSAYSKAGDVAKCEDIVNELHESGLEPDTFVLNSML 435

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
           NLYGRLGQF KMEEVLTAME G YA DISTYNILINIYGR GF EKMEGLFQSL AK LK
Sbjct: 436 NLYGRLGQFGKMEEVLTAMESGPYATDISTYNILINIYGRAGFFEKMEGLFQSLAAKNLK 495

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
           PDVVTWTSRL AYSRKKLY +CLEIFEEMIDAGC+PDG TAKVL+S+CSSEDQIEQVTT+
Sbjct: 496 PDVVTWTSRLGAYSRKKLYTKCLEIFEEMIDAGCHPDGRTAKVLLSSCSSEDQIEQVTTV 555

Query: 237 VRTMHKDMKTALPI 250
           +RTMHK+M+T LP+
Sbjct: 556 IRTMHKNMETVLPV 569

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449530353|ref|XP_004172160.1| PREDICTED: pentatricopeptide repeat-containing protein At2g35130-like, partial [Cucumis sativus]

 Score =  337 bits (865), Expect = 3e-90,   Method: Compositional matrix adjust.
 Identities = 155/194 (79%), Positives = 176/194 (90%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           DA AVFEEMKR+GITPTMKSHMLLL+AYS  GNVAKCE +I QMHKSGLKPDTFV+NSML
Sbjct: 119 DAQAVFEEMKRIGITPTMKSHMLLLSAYSSAGNVAKCEDIIGQMHKSGLKPDTFVMNSML 178

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
           NLYGRLGQF KME++ + M+KG   ADISTYNILIN+YGR GF+E+ME LFQ LPAK L+
Sbjct: 179 NLYGRLGQFGKMEDLFSTMQKGPCRADISTYNILINVYGRAGFVERMEELFQLLPAKNLE 238

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
           PDVVTWTSR+ AYSRKKLY+RCLE+FE+MIDAGCYPDGGTAKVL+SACSSE+QIEQVT +
Sbjct: 239 PDVVTWTSRIGAYSRKKLYKRCLELFEKMIDAGCYPDGGTAKVLLSACSSEEQIEQVTNV 298

Query: 237 VRTMHKDMKTALPI 250
           VRTMHKD+KT LP+
Sbjct: 299 VRTMHKDLKTLLPV 312

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449455399|ref|XP_004145440.1| PREDICTED: pentatricopeptide repeat-containing protein At2g35130-like [Cucumis sativus]

 Score =  336 bits (861), Expect = 8e-90,   Method: Compositional matrix adjust.
 Identities = 155/194 (79%), Positives = 176/194 (90%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           DA AVFEEMKR+GITPTMKSHMLLL+AYS  GNVAKCE +I QMHKSGLKPDTFV+NSML
Sbjct: 383 DAQAVFEEMKRIGITPTMKSHMLLLSAYSSAGNVAKCEDIIGQMHKSGLKPDTFVMNSML 442

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
           NLYGRLGQF KME++ + M+KG   ADISTYNILIN+YGR GF+E+ME LFQ LPAK L+
Sbjct: 443 NLYGRLGQFGKMEDLFSTMQKGPCRADISTYNILINVYGRAGFVERMEELFQLLPAKNLE 502

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
           PDVVTWTSR+ AYSRKKLY+RCLE+FE+MIDAGCYPDGGTAKVL+SACSSE+QIEQVT +
Sbjct: 503 PDVVTWTSRIGAYSRKKLYKRCLELFEKMIDAGCYPDGGTAKVLLSACSSEEQIEQVTNV 562

Query: 237 VRTMHKDMKTALPI 250
           VRTMHKD+KT LP+
Sbjct: 563 VRTMHKDLKTLLPV 576

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225423724|ref|XP_002276864.1| PREDICTED: pentatricopeptide repeat-containing protein At2g35130-like [Vitis vinifera]

 Score =  335 bits (859), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 155/192 (80%), Positives = 175/192 (91%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           DA AVFE MKRLGITPTMKSHMLLL+AYS+ G VAKCE ++NQMHKSG+KPDTFV+NSML
Sbjct: 396 DAQAVFEVMKRLGITPTMKSHMLLLSAYSRAGKVAKCEEIVNQMHKSGIKPDTFVLNSML 455

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
           NLYGRLGQFEKMEEVLTAMEKG Y ADISTYNILINIYGR GF  +ME LF+SLPA+ L 
Sbjct: 456 NLYGRLGQFEKMEEVLTAMEKGPYPADISTYNILINIYGRAGFFARMEELFRSLPARNLI 515

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
           PDVVTWTSR+ AYSR+K Y RCLE+FEEMIDAGCYPDGGTAKVL+SACS+ DQI++VTT+
Sbjct: 516 PDVVTWTSRIGAYSRRKQYNRCLEVFEEMIDAGCYPDGGTAKVLLSACSNGDQIQEVTTV 575

Query: 237 VRTMHKDMKTAL 248
           +RTMHKDM+T+L
Sbjct: 576 IRTMHKDMRTSL 587

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297737955|emb|CBI27156.3| unnamed protein product [Vitis vinifera]

 Score =  335 bits (859), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 155/192 (80%), Positives = 175/192 (91%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           DA AVFE MKRLGITPTMKSHMLLL+AYS+ G VAKCE ++NQMHKSG+KPDTFV+NSML
Sbjct: 434 DAQAVFEVMKRLGITPTMKSHMLLLSAYSRAGKVAKCEEIVNQMHKSGIKPDTFVLNSML 493

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
           NLYGRLGQFEKMEEVLTAMEKG Y ADISTYNILINIYGR GF  +ME LF+SLPA+ L 
Sbjct: 494 NLYGRLGQFEKMEEVLTAMEKGPYPADISTYNILINIYGRAGFFARMEELFRSLPARNLI 553

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
           PDVVTWTSR+ AYSR+K Y RCLE+FEEMIDAGCYPDGGTAKVL+SACS+ DQI++VTT+
Sbjct: 554 PDVVTWTSRIGAYSRRKQYNRCLEVFEEMIDAGCYPDGGTAKVLLSACSNGDQIQEVTTV 613

Query: 237 VRTMHKDMKTAL 248
           +RTMHKDM+T+L
Sbjct: 614 IRTMHKDMRTSL 625

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356575482|ref|XP_003555869.1| PREDICTED: pentatricopeptide repeat-containing protein At2g35130-like [Glycine max]

 Score =  324 bits (830), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 152/195 (77%), Positives = 174/195 (89%)

Query: 56  SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
            DA AVF++MKR+GITPTMKSHM+LL+AYSK G+V KCE ++NQM KSGLK DT+V+NSM
Sbjct: 382 DDAEAVFKDMKRVGITPTMKSHMVLLSAYSKMGSVNKCEEILNQMCKSGLKLDTYVLNSM 441

Query: 116 LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL 175
           LNLYGRLGQF KMEEVL  MEKGSY ADISTYNILIN YG+ GFIE+ME LFQ LP+K L
Sbjct: 442 LNLYGRLGQFGKMEEVLRVMEKGSYVADISTYNILINRYGQAGFIERMEDLFQLLPSKGL 501

Query: 176 KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTT 235
           KPDVVTWTSR+ AYS+KKLY +CLEIFEEMID GCYPDGGTAKVL++ACS+EDQ EQVTT
Sbjct: 502 KPDVVTWTSRIGAYSKKKLYLKCLEIFEEMIDDGCYPDGGTAKVLLAACSNEDQTEQVTT 561

Query: 236 LVRTMHKDMKTALPI 250
           ++RTMHKDMKT LP+
Sbjct: 562 VIRTMHKDMKTVLPV 576

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297826989|ref|XP_002881377.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297327216|gb|EFH57636.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata]

 Score =  295 bits (756), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 135/192 (70%), Positives = 163/192 (84%)

Query: 56  SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
           SDA AVFEEMKRLGI PTMKSHMLLL+AYS+  +V KCE ++ +M ++G++PDTFV+NSM
Sbjct: 384 SDAEAVFEEMKRLGIAPTMKSHMLLLSAYSRARDVTKCEAIVKEMSENGVEPDTFVLNSM 443

Query: 116 LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL 175
           LNLYGRLGQF KME++L  ME G   ADISTYNILINIYG+ GF+E++E LF  L  +  
Sbjct: 444 LNLYGRLGQFTKMEKILAEMENGPCTADISTYNILINIYGKAGFLERIEELFVELKERNF 503

Query: 176 KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTT 235
           KPDVVTWTSR+ AYSRKKLY +CLEIFEEMID+GC PDGGTAKVL+SACSSEDQ+EQVT+
Sbjct: 504 KPDVVTWTSRIGAYSRKKLYVKCLEIFEEMIDSGCAPDGGTAKVLLSACSSEDQVEQVTS 563

Query: 236 LVRTMHKDMKTA 247
           ++RTMHK +  +
Sbjct: 564 VLRTMHKGVSVS 575

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15226907|ref|NP_181058.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] gi|75100538|sp|O82178.1|PP186_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g35130 gi|3668091|gb|AAC61823.1| hypothetical protein [Arabidopsis thaliana] gi|330253974|gb|AEC09068.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]

 Score =  294 bits (753), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 134/187 (71%), Positives = 161/187 (86%)

Query: 56  SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
           SDA AVFEEMKRLGI PTMKSHMLLL+AYSK  +V KCE ++ +M ++G++PDTFV+NSM
Sbjct: 386 SDAEAVFEEMKRLGIAPTMKSHMLLLSAYSKARDVTKCEAIVKEMSENGVEPDTFVLNSM 445

Query: 116 LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL 175
           LNLYGRLGQF KME++L  ME G   ADISTYNILINIYG+ GF+E++E LF  L  K  
Sbjct: 446 LNLYGRLGQFTKMEKILAEMENGPCTADISTYNILINIYGKAGFLERIEELFVELKEKNF 505

Query: 176 KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTT 235
           +PDVVTWTSR+ AYSRKKLY +CLE+FEEMID+GC PDGGTAKVL+SACSSE+Q+EQVT+
Sbjct: 506 RPDVVTWTSRIGAYSRKKLYVKCLEVFEEMIDSGCAPDGGTAKVLLSACSSEEQVEQVTS 565

Query: 236 LVRTMHK 242
           ++RTMHK
Sbjct: 566 VLRTMHK 572

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|334184699|ref|NP_001189682.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] gi|330253975|gb|AEC09069.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]

 Score =  293 bits (751), Expect = 4e-77,   Method: Compositional matrix adjust.
 Identities = 134/187 (71%), Positives = 161/187 (86%)

Query: 56  SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM 115
           SDA AVFEEMKRLGI PTMKSHMLLL+AYSK  +V KCE ++ +M ++G++PDTFV+NSM
Sbjct: 408 SDAEAVFEEMKRLGIAPTMKSHMLLLSAYSKARDVTKCEAIVKEMSENGVEPDTFVLNSM 467

Query: 116 LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL 175
           LNLYGRLGQF KME++L  ME G   ADISTYNILINIYG+ GF+E++E LF  L  K  
Sbjct: 468 LNLYGRLGQFTKMEKILAEMENGPCTADISTYNILINIYGKAGFLERIEELFVELKEKNF 527

Query: 176 KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTT 235
           +PDVVTWTSR+ AYSRKKLY +CLE+FEEMID+GC PDGGTAKVL+SACSSE+Q+EQVT+
Sbjct: 528 RPDVVTWTSRIGAYSRKKLYVKCLEVFEEMIDSGCAPDGGTAKVLLSACSSEEQVEQVTS 587

Query: 236 LVRTMHK 242
           ++RTMHK
Sbjct: 588 VLRTMHK 594

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147779268|emb|CAN70089.1| hypothetical protein VITISV_038171 [Vitis vinifera]

 Score =  289 bits (740), Expect = 7e-76,   Method: Compositional matrix adjust.
 Identities = 134/162 (82%), Positives = 146/162 (90%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           DA AVFE MKRLGITPTMKSHMLLL+AYS+ G VAKCE ++NQMHKSG+KPDTFV+NSML
Sbjct: 326 DAQAVFEVMKRLGITPTMKSHMLLLSAYSRAGKVAKCEEIVNQMHKSGIKPDTFVLNSML 385

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
           NLYGRLGQFEKMEEVLTAMEKG Y ADISTYNILINIYGR GF  +ME LF+SLPA+ L 
Sbjct: 386 NLYGRLGQFEKMEEVLTAMEKGPYPADISTYNILINIYGRAGFFARMEELFRSLPARNLI 445

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAK 218
           PDVVTWTSR+ AYSR+K Y RCLE+FEEMIDAGCYPDGGTAK
Sbjct: 446 PDVVTWTSRIGAYSRRKQYNRCLEVFEEMIDAGCYPDGGTAK 487

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	271
TAIR|locus:2151281	819	AT5G02860 [Arabidopsis thalian	0.675	0.223	0.324	1.3e-20
TAIR|locus:2027166	862	PTAC2 "plastid transcriptional	0.660	0.207	0.273	1.5e-18
TAIR|locus:2122561	563	EMB2453 "EMBRYO DEFECTIVE 2453	0.697	0.335	0.269	1.1e-17
TAIR|locus:2077735	590	AT3G59040 "AT3G59040" [Arabido	0.752	0.345	0.269	1.5e-17
TAIR|locus:2150024	729	AT5G01110 [Arabidopsis thalian	0.642	0.238	0.305	2.8e-17
TAIR|locus:2157607	709	AT5G42310 [Arabidopsis thalian	0.789	0.301	0.271	3.7e-17
TAIR|locus:2157732	723	EMB1006 "embryo defective 1006	0.634	0.237	0.264	7.5e-17
TAIR|locus:2024296	598	AT1G09900 "AT1G09900" [Arabido	0.752	0.341	0.236	1.1e-16
TAIR|locus:504956171	650	ABO5 "ABA Overly-Sensitive 5"	0.627	0.261	0.257	1.7e-16
TAIR|locus:2061310	918	GUN1 "AT2G31400" [Arabidopsis	0.623	0.184	0.278	1.8e-16

TAIR|locus:2151281 AT5G02860 [Arabidopsis thaliana (taxid:3702)]

 Score = 254 (94.5 bits), Expect = 1.3e-20, P = 1.3e-20
 Identities = 60/185 (32%), Positives = 95/185 (51%)

Query:    57 DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
             +A  V  EM   G +P++ ++  L++AY++ G + +   + NQM + G KPD F   ++L
Sbjct:   332 EAMKVLNEMVLNGFSPSIVTYNSLISAYARDGMLDEAMELKNQMAEKGTKPDVFTYTTLL 391

Query:   117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYG-RGGFIEKMEGLFQSLPAKRL 175
             + + R G+ E    +   M       +I T+N  I +YG RG F E M+ +F  +    L
Sbjct:   392 SGFERAGKVESAMSIFEEMRNAGCKPNICTFNAFIKMYGNRGKFTEMMK-IFDEINVCGL 450

Query:   176 KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTT 235
              PD+VTW + LA + +  +      +F+EM  AG  P+  T   LISA S     EQ  T
Sbjct:   451 SPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERETFNTLISAYSRCGSFEQAMT 510

Query:   236 LVRTM 240
             + R M
Sbjct:   511 VYRRM 515

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2027166 PTAC2 "plastid transcriptionally active 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 235 (87.8 bits), Expect = 1.5e-18, P = 1.5e-18
 Identities = 49/179 (27%), Positives = 93/179 (51%)

Query:    64 EMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLG 123
             EM   G  P + S+ +LL AY+K+G++ +  GV +QM  +G  P+    + +LNL+G+ G
Sbjct:   307 EMASGGSLPDITSYNVLLEAYAKSGSIKEAMGVFHQMQAAGCTPNANTYSVLLNLFGQSG 366

Query:   124 QFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWT 183
             +++ + ++   M+  +   D +TYNILI ++G GG+ +++  LF  +  + ++PD+ T+ 
Sbjct:   367 RYDDVRQLFLEMKSSNTDPDAATYNILIEVFGEGGYFKEVVTLFHDMVEENIEPDMETYE 426

Query:   184 SRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHK 242
               + A  +  L+    +I + M      P       +I A       E+      TMH+
Sbjct:   427 GIIFACGKGGLHEDARKILQYMTANDIVPSSKAYTGVIEAFGQAALYEEALVAFNTMHE 485

GO:0009507 "chloroplast" evidence=IDA

GO:0009295 "nucleoid" evidence=IDA

GO:0009508 "plastid chromosome" evidence=IDA

GO:0042793 "transcription from plastid promoter" evidence=RCA;IMP

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA;IMP

GO:0006364 "rRNA processing" evidence=RCA

GO:0006399 "tRNA metabolic process" evidence=RCA

GO:0009658 "chloroplast organization" evidence=RCA

GO:0009902 "chloroplast relocation" evidence=RCA

GO:0009965 "leaf morphogenesis" evidence=RCA

GO:0010027 "thylakoid membrane organization" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0010207 "photosystem II assembly" evidence=RCA

GO:0030154 "cell differentiation" evidence=RCA

GO:0034660 "ncRNA metabolic process" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=RCA

GO:0045036 "protein targeting to chloroplast" evidence=RCA

TAIR|locus:2122561 EMB2453 "EMBRYO DEFECTIVE 2453" [Arabidopsis thaliana (taxid:3702)]

 Score = 224 (83.9 bits), Expect = 1.1e-17, P = 1.1e-17
 Identities = 52/193 (26%), Positives = 97/193 (50%)

Query:    72 PTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEV 131
             P + ++ +LL A++++G V +   +   +  S + PD +  N +++ YG+ G  ++ME V
Sbjct:   206 PNVVTYNILLRAFAQSGKVDQVNALFKDLDMSPVSPDVYTFNGVMDAYGKNGMIKEMEAV 265

Query:   132 LTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSR 191
             LT M       DI T+N+LI+ YG+    EKME  F+SL   + KP + T+ S +  Y +
Sbjct:   266 LTRMRSNECKPDIITFNVLIDSYGKKQEFEKMEQTFKSLMRSKEKPTLPTFNSMIINYGK 325

Query:   192 KKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA---CSSEDQIEQVTTLVRTMHKDMKTA- 247
              ++  +   +F++M D    P   T + +I     C S  +  ++   V    + +K + 
Sbjct:   326 ARMIDKAEWVFKKMNDMNYIPSFITYECMIMMYGYCGSVSRAREIFEEVGESDRVLKAST 385

Query:   248 LPIYFNLYGEKGV 260
             L     +Y   G+
Sbjct:   386 LNAMLEVYCRNGL 398

GO:0009507 "chloroplast" evidence=ISM

GO:0009793 "embryo development ending in seed dormancy" evidence=IMP;NAS

TAIR|locus:2077735 AT3G59040 "AT3G59040" [Arabidopsis thaliana (taxid:3702)]

 Score = 223 (83.6 bits), Expect = 1.5e-17, P = 1.5e-17
 Identities = 55/204 (26%), Positives = 100/204 (49%)

Query:    57 DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
             +A +VFEEM   G+ PT K++ +LL A++ +G V + + V   M +  + PD +   +ML
Sbjct:   339 EALSVFEEMLDAGVRPTHKAYNILLDAFAISGMVEQAKTVFKSMRRDRIFPDLWSYTTML 398

Query:   117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
             + Y      E  E+    ++   +  +I TY  LI  Y +   +EKM  +++ +    +K
Sbjct:   399 SAYVNASDMEGAEKFFKRIKVDGFEPNIVTYGTLIKGYAKANDVEKMMEVYEKMRLSGIK 458

Query:   177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
              +    T+ + A  R K +   L  ++EM   G  PD     VL+S  S++D++E+   L
Sbjct:   459 ANQTILTTIMDASGRCKNFGSALGWYKEMESCGVPPDQKAKNVLLSLASTQDELEEAKEL 518

Query:   237 VRTMHKDMKTALPIYFNLYGEKGV 260
                 ++       +Y +   E+GV
Sbjct:   519 TGIRNETATIIARVYGSDDDEEGV 542

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0006098 "pentose-phosphate shunt" evidence=RCA

GO:0006364 "rRNA processing" evidence=RCA

GO:0006399 "tRNA metabolic process" evidence=RCA

GO:0009658 "chloroplast organization" evidence=RCA

TAIR|locus:2150024 AT5G01110 [Arabidopsis thaliana (taxid:3702)]

 Score = 222 (83.2 bits), Expect = 2.8e-17, P = 2.8e-17
 Identities = 54/177 (30%), Positives = 92/177 (51%)

Query:    57 DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
             +AH  F  ++  G T ++ +   L+ +  + G V    GV  ++ +SG+  + + +N M+
Sbjct:   183 EAHEAFTLLRSKGFTVSIDACNALIGSLVRIGWVELAWGVYQEISRSGVGINVYTLNIMV 242

Query:   117 NLYGRLGQFEKMEEVLTAM-EKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL 175
             N   + G+ EK+   L+ + EKG Y  DI TYN LI+ Y   G +E+   L  ++P K  
Sbjct:   243 NALCKDGKMEKVGTFLSQVQEKGVYP-DIVTYNTLISAYSSKGLMEEAFELMNAMPGKGF 301

Query:   176 KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAK-VLISACSSEDQIE 231
              P V T+ + +    +   Y R  E+F EM+ +G  PD  T + +L+ AC   D +E
Sbjct:   302 SPGVYTYNTVINGLCKHGKYERAKEVFAEMLRSGLSPDSTTYRSLLMEACKKGDVVE 358

GO:0005739 "mitochondrion" evidence=ISM

TAIR|locus:2157607 AT5G42310 [Arabidopsis thaliana (taxid:3702)]

 Score = 208 (78.3 bits), Expect = 3.7e-17, Sum P(2) = 3.7e-17
 Identities = 61/225 (27%), Positives = 103/225 (45%)

Query:    44 PNLFVFIFSIY-FSD------AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGV 96
             PN FVF   +  F D         V +EMK +G+ P  + + +++  + K   +      
Sbjct:   407 PNSFVFSRLLAGFRDRGEWQKTFQVLKEMKSIGVKPDRQFYNVVIDTFGKFNCLDHAMTT 466

Query:    97 INQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGR 156
              ++M   G++PD    N++++ + + G+    EE+  AME+       +TYNI+IN YG 
Sbjct:   467 FDRMLSEGIEPDRVTWNTLIDCHCKHGRHIVAEEMFEAMERRGCLPCATTYNIMINSYGD 526

Query:   157 GGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGT 216
                 + M+ L   + ++ + P+VVT T+ +  Y +   +   +E  EEM   G  P    
Sbjct:   527 QERWDDMKRLLGKMKSQGILPNVVTHTTLVDVYGKSGRFNDAIECLEEMKSVGLKPSSTM 586

Query:   217 AKVLISACSSEDQIEQVTTLVRTMHKD-MKT---ALPIYFNLYGE 257
                LI+A +     EQ     R M  D +K    AL    N +GE
Sbjct:   587 YNALINAYAQRGLSEQAVNAFRVMTSDGLKPSLLALNSLINAFGE 631

GO:0005739 "mitochondrion" evidence=ISM

GO:0009507 "chloroplast" evidence=IDA

TAIR|locus:2157732 EMB1006 "embryo defective 1006" [Arabidopsis thaliana (taxid:3702)]

 Score = 218 (81.8 bits), Expect = 7.5e-17, P = 7.5e-17
 Identities = 46/174 (26%), Positives = 94/174 (54%)

Query:    42 HTPNLFVFIFSI--YFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQ 99
             H+    +  +S+  +   A+A FEEM + GI P+++++  +L A+ ++G+  K   +   
Sbjct:   486 HSYTALIHAYSVSGWHEKAYASFEEMCKEGIKPSVETYTSVLDAFRRSGDTGKLMEIWKL 545

Query:   100 MHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGF 159
             M +  +K      N++L+ + + G + +  +V++   K      + TYN+L+N Y RGG 
Sbjct:   546 MLREKIKGTRITYNTLLDGFAKQGLYIEARDVVSEFSKMGLQPSVMTYNMLMNAYARGGQ 605

Query:   160 IEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPD 213
               K+  L + + A  LKPD +T+++ + A+ R + ++R     + M+ +G  PD
Sbjct:   606 DAKLPQLLKEMAALNLKPDSITYSTMIYAFVRVRDFKRAFFYHKMMVKSGQVPD 659

GO:0009507 "chloroplast" evidence=ISM

GO:0009793 "embryo development ending in seed dormancy" evidence=NAS

TAIR|locus:2024296 AT1G09900 "AT1G09900" [Arabidopsis thaliana (taxid:3702)]

 Score = 215 (80.7 bits), Expect = 1.1e-16, P = 1.1e-16
 Identities = 49/207 (23%), Positives = 103/207 (49%)

Query:    59 HAV--FEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
             HA+   +EM+  G TP + ++ +L+    K G + +    +N M  SG +P+    N +L
Sbjct:   257 HAMKLLDEMRDRGCTPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSSGCQPNVITHNIIL 316

Query:   117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
                   G++   E++L  M +  ++  + T+NILIN   R G + +   + + +P    +
Sbjct:   317 RSMCSTGRWMDAEKLLADMLRKGFSPSVVTFNILINFLCRKGLLGRAIDILEKMPQHGCQ 376

Query:   177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
             P+ +++   L  + ++K   R +E  E M+  GCYPD  T   +++A   + ++E    +
Sbjct:   377 PNSLSYNPLLHGFCKEKKMDRAIEYLERMVSRGCYPDIVTYNTMLTALCKDGKVEDAVEI 436

Query:   237 VRTMHKDMKTALPIYFNLYGEKGVARS 263
             +  +     + + I +N   + G+A++
Sbjct:   437 LNQLSSKGCSPVLITYNTVID-GLAKA 462

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0016020 "membrane" evidence=IDA

TAIR|locus:504956171 ABO5 "ABA Overly-Sensitive 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 214 (80.4 bits), Expect = 1.7e-16, P = 1.7e-16
 Identities = 44/171 (25%), Positives = 83/171 (48%)

Query:    70 ITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKME 129
             +T TM  +  + +A  K   ++    +  +M K G  PD F  N ++  +GR+G+ ++  
Sbjct:   439 VTDTMM-YNTVFSALGKLKQISHIHDLFEKMKKDGPSPDIFTYNILIASFGRVGEVDEAI 497

Query:   130 EVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAY 189
              +   +E+     DI +YN LIN  G+ G +++    F+ +  K L PDVVT+++ +  +
Sbjct:   498 NIFEELERSDCKPDIISYNSLINCLGKNGDVDEAHVRFKEMQEKGLNPDVVTYSTLMECF 557

Query:   190 SRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM 240
              + +       +FEEM+  GC P+  T  +L+       +  +   L   M
Sbjct:   558 GKTERVEMAYSLFEEMLVKGCQPNIVTYNILLDCLEKNGRTAEAVDLYSKM 608

GO:0005739 "mitochondrion" evidence=ISM;IDA

GO:0008380 "RNA splicing" evidence=IMP

GO:0009737 "response to abscisic acid stimulus" evidence=IMP

TAIR|locus:2061310 GUN1 "AT2G31400" [Arabidopsis thaliana (taxid:3702)]

 Score = 216 (81.1 bits), Expect = 1.8e-16, P = 1.8e-16
 Identities = 47/169 (27%), Positives = 91/169 (53%)

Query:    55 FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS 114
             F +A  +F EM+ LGI     S+  LL+ Y+K G   +   ++ +M   G+K D    N+
Sbjct:   425 FDEALNLFGEMRYLGIALDRVSYNTLLSIYTKVGRSEEALDILREMASVGIKKDVVTYNA 484

Query:   115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR 174
             +L  YG+ G+++++++V T M++     ++ TY+ LI+ Y +GG  ++   +F+   +  
Sbjct:   485 LLGGYGKQGKYDEVKKVFTEMKREHVLPNLLTYSTLIDGYSKGGLYKEAMEIFREFKSAG 544

Query:   175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA 223
             L+ DVV +++ + A  +  L    + + +EM   G  P+  T   +I A
Sbjct:   545 LRADVVLYSALIDALCKNGLVGSAVSLIDEMTKEGISPNVVTYNSIIDA 593

GO:0003677 "DNA binding" evidence=IDA

GO:0009507 "chloroplast" evidence=IDA

GO:0031930 "mitochondria-nucleus signaling pathway" evidence=IMP

GO:0010019 "chloroplast-nucleus signaling pathway" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
O82178	PP186_ARATH	No assigned EC number	0.7165	0.6752	0.3096	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: scaffold_402109.1 annotation not avaliable (589 aa) (Arabidopsis lyrata)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	271
PLN03081	697	PLN03081, PLN03081, pentatricopeptide (PPR) repeat	3e-13
PLN03218	1060	PLN03218, PLN03218, maturation of RBCL 1; Provisio	2e-11
PLN03218	1060	PLN03218, PLN03218, maturation of RBCL 1; Provisio	1e-10
PLN03077	857	PLN03077, PLN03077, Protein ECB2; Provisional	1e-08
PLN03077	857	PLN03077, PLN03077, Protein ECB2; Provisional	2e-08
PLN03077	857	PLN03077, PLN03077, Protein ECB2; Provisional	6e-08
PLN03218	1060	PLN03218, PLN03218, maturation of RBCL 1; Provisio	7e-08
PLN03218	1060	PLN03218, PLN03218, maturation of RBCL 1; Provisio	8e-08
pfam13041	50	pfam13041, PPR_2, PPR repeat family	1e-07
pfam13041	50	pfam13041, PPR_2, PPR repeat family	1e-06
PLN03077	857	PLN03077, PLN03077, Protein ECB2; Provisional	2e-06
pfam13041	50	pfam13041, PPR_2, PPR repeat family	6e-06
PLN03077	857	PLN03077, PLN03077, Protein ECB2; Provisional	8e-05
PLN03077	857	PLN03077, PLN03077, Protein ECB2; Provisional	8e-05
TIGR00756	35	TIGR00756, PPR, pentatricopeptide repeat domain (P	1e-04
TIGR00756	35	TIGR00756, PPR, pentatricopeptide repeat domain (P	2e-04
pfam13041	50	pfam13041, PPR_2, PPR repeat family	3e-04
pfam01535	31	pfam01535, PPR, PPR repeat	4e-04
pfam13812	34	pfam13812, PPR_3, Pentatricopeptide repeat domain	0.003
PLN03081	697	PLN03081, PLN03081, pentatricopeptide (PPR) repeat	0.004

>gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional

 Score = 69.1 bits (169), Expect = 3e-13
 Identities = 44/190 (23%), Positives = 86/190 (45%), Gaps = 8/190 (4%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           DA  VF+ M       T  +   +L  Y+  G   +   +  +M  SG+  D F  + M+
Sbjct: 277 DARCVFDGMPE----KTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMI 332

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
            ++ RL   E  ++    + +  +  DI     L+++Y + G +E    +F  +P K   
Sbjct: 333 RIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRK--- 389

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL 236
            ++++W + +A Y       + +E+FE MI  G  P+  T   ++SAC      EQ   +
Sbjct: 390 -NLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEI 448

Query: 237 VRTMHKDMKT 246
            ++M ++ + 
Sbjct: 449 FQSMSENHRI 458

Length = 697

>gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional

 Score = 63.7 bits (155), Expect = 2e-11
 Identities = 42/188 (22%), Positives = 92/188 (48%), Gaps = 11/188 (5%)

Query: 71  TPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEE 130
            PT+ +  +L++  + + ++     V+  + ++GLK D  +  ++++   + G+ + M E
Sbjct: 434 NPTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFE 493

Query: 131 VLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYS 190
           V   M      A++ T+  LI+   R G + K  G +  + +K +KPD V + + ++A  
Sbjct: 494 VFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACG 553

Query: 191 RKKLYRRCLEIFEEM------IDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHK-D 243
           +     R  ++  EM      ID    PD  T   L+ AC++  Q+++   + + +H+ +
Sbjct: 554 QSGAVDRAFDVLAEMKAETHPID----PDHITVGALMKACANAGQVDRAKEVYQMIHEYN 609

Query: 244 MKTALPIY 251
           +K    +Y
Sbjct: 610 IKGTPEVY 617

Length = 1060

>gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional

 Score = 61.0 bits (148), Expect = 1e-10
 Identities = 39/186 (20%), Positives = 81/186 (43%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A  V++ +    I  T + + + + + S+ G+      + + M K G+KPD    +++++
Sbjct: 598 AKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVD 657

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
           + G  G  +K  E+L    K        +Y+ L+         +K   L++ + + +L+P
Sbjct: 658 VAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRP 717

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV 237
            V T  + + A        + LE+  EM   G  P+  T  +L+ A   +D  +    L+
Sbjct: 718 TVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLL 777

Query: 238 RTMHKD 243
               +D
Sbjct: 778 SQAKED 783

Length = 1060

>gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional

 Score = 55.2 bits (133), Expect = 1e-08
 Identities = 39/144 (27%), Positives = 68/144 (47%), Gaps = 6/144 (4%)

Query: 62  FEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGR 121
           F +M  L + P   + +  L+A ++ G +   + +   + ++G+  D F+ N++L+LY R
Sbjct: 478 FRQML-LTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVR 536

Query: 122 LGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVT 181
            G+         + EK     D+ ++NIL+  Y   G       LF  +    + PD VT
Sbjct: 537 CGRMNYAWNQFNSHEK-----DVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVT 591

Query: 182 WTSRLAAYSRKKLYRRCLEIFEEM 205
           + S L A SR  +  + LE F  M
Sbjct: 592 FISLLCACSRSGMVTQGLEYFHSM 615

Length = 857

>gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional

 Score = 54.5 bits (131), Expect = 2e-08
 Identities = 35/127 (27%), Positives = 58/127 (45%), Gaps = 4/127 (3%)

Query: 100 MHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGF 159
           M +  + PD   I S+++    LG      E+   + K  +A D+S  N LI +Y   G 
Sbjct: 279 MRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGS 338

Query: 160 IEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKV 219
             + E +F  +  K    D V+WT+ ++ Y +  L  + LE +  M      PD  T   
Sbjct: 339 WGEAEKVFSRMETK----DAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIAS 394

Query: 220 LISACSS 226
           ++SAC+ 
Sbjct: 395 VLSACAC 401

Length = 857

>gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional

 Score = 53.3 bits (128), Expect = 6e-08
 Identities = 44/172 (25%), Positives = 74/172 (43%), Gaps = 15/172 (8%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
           +A  VF  M+         S   +++ Y K G   K       M +  + PD   I S+L
Sbjct: 341 EAEKVFSRMETKDAV----SWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVL 396

Query: 117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK 176
           +    LG  +   ++    E+    + +   N LI +Y +   I+K   +F ++P K   
Sbjct: 397 SACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEK--- 453

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLE---IFEEMIDAGCYPDGGTAKVLISACS 225
            DV++WTS +A     +L  RC E    F +M+     P+  T    +SAC+
Sbjct: 454 -DVISWTSIIAGL---RLNNRCFEALIFFRQML-LTLKPNSVTLIAALSACA 500

Length = 857

>gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional

 Score = 53.0 bits (127), Expect = 7e-08
 Identities = 33/167 (19%), Positives = 69/167 (41%)

Query: 58  AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           A +++++MK+ G+ P       L+      G++ K   ++    K G+K  T   +S++ 
Sbjct: 633 ALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMG 692

Query: 118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP 177
                  ++K  E+   ++       +ST N LI     G  + K   +   +    L P
Sbjct: 693 ACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCP 752

Query: 178 DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISAC 224
           + +T++  L A  RK      L++  +  + G  P+    + +   C
Sbjct: 753 NTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLC 799

Length = 1060

>gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional

 Score = 52.6 bits (126), Expect = 8e-08
 Identities = 41/165 (24%), Positives = 74/165 (44%), Gaps = 6/165 (3%)

Query: 61  VFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYG 120
           VF EM   G+   + +   L+   ++ G VAK  G    M    +KPD  V N++++  G
Sbjct: 494 VFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACG 553

Query: 121 RLGQFEKMEEVLTAM--EKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPD 178
           + G  ++  +VL  M  E      D  T   L+      G +++ + ++Q +    +K  
Sbjct: 554 QSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGT 613

Query: 179 VVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA 223
              +T  + + S+K  +   L I+++M   G  PD    +V  SA
Sbjct: 614 PEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPD----EVFFSA 654

Length = 1060

>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family

 Score = 47.4 bits (114), Expect = 1e-07
 Identities = 16/48 (33%), Positives = 24/48 (50%)

Query: 177 PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISAC 224
           PDVVT+ + +  Y +K      L++F EM   G  P+  T  +LI   
Sbjct: 1   PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48

This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50

>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family

 Score = 44.3 bits (106), Expect = 1e-06
 Identities = 13/46 (28%), Positives = 27/46 (58%)

Query: 107 PDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILIN 152
           PD    N++++ Y + G+ E+  ++   M+K     ++ TY+ILI+
Sbjct: 1   PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILID 46

This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50

>gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional

 Score = 48.3 bits (115), Expect = 2e-06
 Identities = 34/146 (23%), Positives = 66/146 (45%), Gaps = 4/146 (2%)

Query: 79  LLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKG 138
           +L+  Y+K G   +   + ++M  +G++PD +    +L   G +    +  EV   + + 
Sbjct: 157 VLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRF 216

Query: 139 SYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRC 198
            +  D+   N LI +Y + G +     +F  +P +    D ++W + ++ Y         
Sbjct: 217 GFELDVDVVNALITMYVKCGDVVSARLVFDRMPRR----DCISWNAMISGYFENGECLEG 272

Query: 199 LEIFEEMIDAGCYPDGGTAKVLISAC 224
           LE+F  M +    PD  T   +ISAC
Sbjct: 273 LELFFTMRELSVDPDLMTITSVISAC 298

Length = 857

>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family

 Score = 42.4 bits (101), Expect = 6e-06
 Identities = 15/49 (30%), Positives = 28/49 (57%)

Query: 143 DISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSR 191
           D+ TYN LI+ Y + G +E+   LF  +  + +KP+V T++  +    +
Sbjct: 2   DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50

This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50

>gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional

 Score = 43.3 bits (102), Expect = 8e-05
 Identities = 30/111 (27%), Positives = 50/111 (45%), Gaps = 4/111 (3%)

Query: 79  LLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAME-K 137
           +LLT Y   G  +    + N+M +SG+ PD     S+L    R G   +  E   +ME K
Sbjct: 559 ILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEK 618

Query: 138 GSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAA 188
            S   ++  Y  ++++ GR G + +       +P   + PD   W + L A
Sbjct: 619 YSITPNLKHYACVVDLLGRAGKLTEAYNFINKMP---ITPDPAVWGALLNA 666

Length = 857

>gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional

 Score = 43.3 bits (102), Expect = 8e-05
 Identities = 34/139 (24%), Positives = 59/139 (42%), Gaps = 5/139 (3%)

Query: 105 LKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKME 164
           LKP++  + + L+   R+G     +E+   + +     D    N L+++Y R G +    
Sbjct: 485 LKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAW 544

Query: 165 GLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISAC 224
             F S      + DVV+W   L  Y         +E+F  M+++G  PD  T   L+ AC
Sbjct: 545 NQFNSH-----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCAC 599

Query: 225 SSEDQIEQVTTLVRTMHKD 243
           S    + Q      +M + 
Sbjct: 600 SRSGMVTQGLEYFHSMEEK 618

Length = 857

>gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif)

 Score = 38.6 bits (91), Expect = 1e-04
 Identities = 12/34 (35%), Positives = 21/34 (61%)

Query: 146 TYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDV 179
           TYN LI+   + G +E+   LF+ +  + ++PDV
Sbjct: 2   TYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35

This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35

>gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif)

 Score = 37.8 bits (89), Expect = 2e-04
 Identities = 10/34 (29%), Positives = 17/34 (50%)

Query: 180 VTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPD 213
           VT+ + +    +       LE+F+EM + G  PD
Sbjct: 1   VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34

This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35

>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family

 Score = 37.4 bits (88), Expect = 3e-04
 Identities = 11/38 (28%), Positives = 22/38 (57%)

Query: 80  LLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN 117
           L+  Y K G V +   + N+M K G+KP+ +  + +++
Sbjct: 9   LIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILID 46

This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50

>gnl|CDD|144943 pfam01535, PPR, PPR repeat

 Score = 36.7 bits (86), Expect = 4e-04
 Identities = 10/31 (32%), Positives = 17/31 (54%)

Query: 180 VTWTSRLAAYSRKKLYRRCLEIFEEMIDAGC 210
           VT+ S ++ Y +       LE+F+EM + G 
Sbjct: 1   VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31

This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31

>gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain

 Score = 34.1 bits (79), Expect = 0.003
 Identities = 12/34 (35%), Positives = 20/34 (58%)

Query: 74  MKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKP 107
           ++++  LL A +K G+      V+ +M  SGLKP
Sbjct: 1   LETYNALLLALAKAGDPDLALAVLEEMKASGLKP 34

This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34

>gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional

 Score = 38.3 bits (89), Expect = 0.004
 Identities = 42/198 (21%), Positives = 77/198 (38%), Gaps = 46/198 (23%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKS-GLKPDTFVINSM 115
            A  +FE M   G+ P   + + +L+A   +G   +   +   M ++  +KP       M
Sbjct: 409 KAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACM 468

Query: 116 LNLYGRLGQFEKM----------------EEVLTA------MEKGSYAAD---------I 144
           + L GR G  ++                   +LTA      +E G  AA+         +
Sbjct: 469 IELLGREGLLDEAYAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKL 528

Query: 145 STYNILINIYGRGGFIEKMEGLFQSLPAKRLK-PDVVTWTS------------RLAAYSR 191
           + Y +L+N+Y   G   +   + ++L  K L      TW              RL   SR
Sbjct: 529 NNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHPACTWIEVKKQDHSFFSGDRLHPQSR 588

Query: 192 KKLYRRCLEIFEEMIDAG 209
            ++Y++  E+ +E+ + G
Sbjct: 589 -EIYQKLDELMKEISEYG 605

Length = 697

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	271
PLN03218	1060	maturation of RBCL 1; Provisional	100.0
PLN03218	1060	maturation of RBCL 1; Provisional	100.0
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	100.0
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	100.0
PLN03077	857	Protein ECB2; Provisional	100.0
PLN03077	857	Protein ECB2; Provisional	100.0
PRK11788	389	tetratricopeptide repeat protein; Provisional	99.8
PRK11788	389	tetratricopeptide repeat protein; Provisional	99.79
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	99.72
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	99.71
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	99.6
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	99.59
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	99.59
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	99.56
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	99.53
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	99.53
KOG4422	625	consensus Uncharacterized conserved protein [Funct	99.51
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	99.51
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	99.5
PF13041	50	PPR_2: PPR repeat family	99.49
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	99.49
PF13041	50	PPR_2: PPR repeat family	99.49
KOG4422	625	consensus Uncharacterized conserved protein [Funct	99.47
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	99.46
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	99.44
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	99.43
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	99.43
PRK12370	553	invasion protein regulator; Provisional	99.42
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	99.42
KOG1126	638	consensus DNA-binding cell division cycle control	99.41
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	99.4
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	99.4
PRK12370	553	invasion protein regulator; Provisional	99.35
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	99.31
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	99.3
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	99.3
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	99.29
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	99.26
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	99.25
KOG1126	638	consensus DNA-binding cell division cycle control	99.25
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	99.24
PRK11189	296	lipoprotein NlpI; Provisional	99.22
PRK11189	296	lipoprotein NlpI; Provisional	99.22
PRK14574	822	hmsH outer membrane protein; Provisional	99.17
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	99.15
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	99.12
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	99.1
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	99.09
KOG1129	478	consensus TPR repeat-containing protein [General f	99.08
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	99.07
KOG2076	895	consensus RNA polymerase III transcription factor	99.06
KOG4318	1088	consensus Bicoid mRNA stability factor [RNA proces	99.06
KOG2003	840	consensus TPR repeat-containing protein [General f	99.05
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	99.05
PRK14574	822	hmsH outer membrane protein; Provisional	99.05
KOG2003	840	consensus TPR repeat-containing protein [General f	99.03
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	99.02
PF12854	34	PPR_1: PPR repeat	99.0
KOG0547	606	consensus Translocase of outer mitochondrial membr	98.99
KOG4318	1088	consensus Bicoid mRNA stability factor [RNA proces	98.98
KOG0547	606	consensus Translocase of outer mitochondrial membr	98.98
KOG1129	478	consensus TPR repeat-containing protein [General f	98.96
PF12854	34	PPR_1: PPR repeat	98.94
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	98.91
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	98.88
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	98.87
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	98.86
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	98.82
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	98.82
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	98.81
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	98.75
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	98.72
PRK10370	198	formate-dependent nitrite reductase complex subuni	98.69
PRK10370	198	formate-dependent nitrite reductase complex subuni	98.67
KOG0495	913	consensus HAT repeat protein [RNA processing and m	98.67
COG4783	484	Putative Zn-dependent protease, contains TPR repea	98.66
PRK15359	144	type III secretion system chaperone protein SscB;	98.65
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	98.63
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	98.63
TIGR02552	135	LcrH_SycD type III secretion low calcium response	98.62
PLN02789	320	farnesyltranstransferase	98.62
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	98.62
KOG0495	913	consensus HAT repeat protein [RNA processing and m	98.61
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	98.6
KOG1125	579	consensus TPR repeat-containing protein [General f	98.6
KOG3081	299	consensus Vesicle coat complex COPI, epsilon subun	98.59
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	98.59
PRK15359	144	type III secretion system chaperone protein SscB;	98.58
PF10037	429	MRP-S27: Mitochondrial 28S ribosomal protein S27;	98.58
KOG3060	289	consensus Uncharacterized conserved protein [Funct	98.58
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	98.57
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	98.56
KOG1128	777	consensus Uncharacterized conserved protein, conta	98.52
KOG1128	777	consensus Uncharacterized conserved protein, conta	98.51
TIGR02552	135	LcrH_SycD type III secretion low calcium response	98.5
PRK14720	906	transcript cleavage factor/unknown domain fusion p	98.5
KOG1070	1710	consensus rRNA processing protein Rrp5 [RNA proces	98.5
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	98.49
COG4783	484	Putative Zn-dependent protease, contains TPR repea	98.49
TIGR00756	35	PPR pentatricopeptide repeat domain (PPR motif). T	98.46
TIGR00756	35	PPR pentatricopeptide repeat domain (PPR motif). T	98.45
KOG3081	299	consensus Vesicle coat complex COPI, epsilon subun	98.41
PF10037	429	MRP-S27: Mitochondrial 28S ribosomal protein S27;	98.41
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	98.41
KOG2076	895	consensus RNA polymerase III transcription factor	98.41
KOG1070	1710	consensus rRNA processing protein Rrp5 [RNA proces	98.4
PF13812	34	PPR_3: Pentatricopeptide repeat domain	98.4
PF13812	34	PPR_3: Pentatricopeptide repeat domain	98.39
PF08579	120	RPM2: Mitochondrial ribonuclease P subunit (RPM2);	98.36
KOG2053	932	consensus Mitochondrial inheritance and actin cyto	98.35
KOG1915	677	consensus Cell cycle control protein (crooked neck	98.35
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	98.35
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	98.35
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	98.34
KOG1125	579	consensus TPR repeat-containing protein [General f	98.32
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	98.29
KOG1914	656	consensus mRNA cleavage and polyadenylation factor	98.28
KOG1915	677	consensus Cell cycle control protein (crooked neck	98.26
KOG3060	289	consensus Uncharacterized conserved protein [Funct	98.26
PLN02789	320	farnesyltranstransferase	98.25
PF08579	120	RPM2: Mitochondrial ribonuclease P subunit (RPM2);	98.25
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	98.2
KOG4340	459	consensus Uncharacterized conserved protein [Funct	98.19
PF01535	31	PPR: PPR repeat; InterPro: IPR002885 This entry re	98.18
KOG3785	557	consensus Uncharacterized conserved protein [Funct	98.16
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	98.13
PF01535	31	PPR: PPR repeat; InterPro: IPR002885 This entry re	98.13
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	98.12
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	98.12
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	98.1
KOG2047	835	consensus mRNA splicing factor [RNA processing and	98.09
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	98.09
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	98.08
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	98.08
PRK14720	906	transcript cleavage factor/unknown domain fusion p	98.07
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	98.06
PF06239	228	ECSIT: Evolutionarily conserved signalling interme	98.06
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	98.05
KOG4340	459	consensus Uncharacterized conserved protein [Funct	98.05
PF06239	228	ECSIT: Evolutionarily conserved signalling interme	98.04
KOG2376	652	consensus Signal recognition particle, subunit Srp	98.03
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	98.01
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	98.0
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	97.99
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	97.98
PRK04841	903	transcriptional regulator MalT; Provisional	97.98
PRK04841	903	transcriptional regulator MalT; Provisional	97.98
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	97.97
KOG3616	1636	consensus Selective LIM binding factor [Transcript	97.94
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	97.93
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	97.93
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	97.91
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	97.88
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	97.86
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	97.86
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	97.82
KOG3616	1636	consensus Selective LIM binding factor [Transcript	97.81
PF12688	120	TPR_5: Tetratrico peptide repeat	97.8
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	97.79
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	97.79
PF04840	319	Vps16_C: Vps16, C-terminal region; InterPro: IPR00	97.79
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	97.76
KOG2047	835	consensus mRNA splicing factor [RNA processing and	97.76
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	97.73
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	97.68
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	97.67
KOG2053	932	consensus Mitochondrial inheritance and actin cyto	97.66
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	97.66
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	97.66
KOG2796	366	consensus Uncharacterized conserved protein [Funct	97.65
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	97.63
KOG2796	366	consensus Uncharacterized conserved protein [Funct	97.61
KOG0985	1666	consensus Vesicle coat protein clathrin, heavy cha	97.59
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	97.57
KOG0553	304	consensus TPR repeat-containing protein [General f	97.53
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	97.5
KOG2376	652	consensus Signal recognition particle, subunit Srp	97.5
KOG0985	1666	consensus Vesicle coat protein clathrin, heavy cha	97.49
PF03704	146	BTAD: Bacterial transcriptional activator domain;	97.49
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	97.49
KOG1914	656	consensus mRNA cleavage and polyadenylation factor	97.48
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	97.45
PF03704	146	BTAD: Bacterial transcriptional activator domain;	97.45
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	97.44
PF12921	126	ATP13: Mitochondrial ATPase expression; InterPro:	97.43
PF12688	120	TPR_5: Tetratrico peptide repeat	97.43
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	97.42
PRK10803	263	tol-pal system protein YbgF; Provisional	97.41
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	97.4
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	97.38
KOG0553	304	consensus TPR repeat-containing protein [General f	97.38
PRK15331	165	chaperone protein SicA; Provisional	97.36
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	97.33
PRK10803	263	tol-pal system protein YbgF; Provisional	97.32
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	97.32
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	97.31
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	97.3
COG4700	251	Uncharacterized protein conserved in bacteria cont	97.23
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	97.23
PF12921	126	ATP13: Mitochondrial ATPase expression; InterPro:	97.18
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	97.18
COG4700	251	Uncharacterized protein conserved in bacteria cont	97.17
KOG2041	1189	consensus WD40 repeat protein [General function pr	97.14
PF13371	73	TPR_9: Tetratricopeptide repeat	97.14
PF04840	319	Vps16_C: Vps16, C-terminal region; InterPro: IPR00	97.04
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	97.03
PF13371	73	TPR_9: Tetratricopeptide repeat	96.97
KOG3941	406	consensus Intermediate in Toll signal transduction	96.93
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	96.9
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	96.89
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	96.84
COG4105	254	ComL DNA uptake lipoprotein [General function pred	96.8
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	96.77
COG5107	660	RNA14 Pre-mRNA 3'-end processing (cleavage and pol	96.75
COG3898	531	Uncharacterized membrane-bound protein [Function u	96.75
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	96.7
KOG3785	557	consensus Uncharacterized conserved protein [Funct	96.61
KOG3941	406	consensus Intermediate in Toll signal transduction	96.61
PF13170	297	DUF4003: Protein of unknown function (DUF4003)	96.55
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	96.51
COG4105	254	ComL DNA uptake lipoprotein [General function pred	96.49
smart00299	140	CLH Clathrin heavy chain repeat homology.	96.45
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	96.43
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	96.42
KOG2610	491	consensus Uncharacterized conserved protein [Funct	96.3
PF13512	142	TPR_18: Tetratricopeptide repeat	96.28
PF07035	167	Mic1: Colon cancer-associated protein Mic1-like; I	96.24
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	96.17
smart00299	140	CLH Clathrin heavy chain repeat homology.	96.17
PRK15331	165	chaperone protein SicA; Provisional	96.15
COG5107	660	RNA14 Pre-mRNA 3'-end processing (cleavage and pol	96.05
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	96.03
PF07035	167	Mic1: Colon cancer-associated protein Mic1-like; I	96.01
PF13170	297	DUF4003: Protein of unknown function (DUF4003)	95.89
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	95.8
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	95.76
COG3898	531	Uncharacterized membrane-bound protein [Function u	95.7
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	95.68
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	95.66
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	95.64
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	95.64
KOG2041	1189	consensus WD40 repeat protein [General function pr	95.58
PF13512	142	TPR_18: Tetratricopeptide repeat	95.58
PF09205	161	DUF1955: Domain of unknown function (DUF1955); Int	95.58
PF13929	292	mRNA_stabil: mRNA stabilisation	95.58
COG3629	280	DnrI DNA-binding transcriptional activator of the	95.57
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	95.53
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	95.52
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	95.46
PF09205	161	DUF1955: Domain of unknown function (DUF1955); Int	95.33
KOG4555	175	consensus TPR repeat-containing protein [Function	95.32
COG4649	221	Uncharacterized protein conserved in bacteria [Fun	95.28
KOG1941	518	consensus Acetylcholine receptor-associated protei	95.14
COG3118	304	Thioredoxin domain-containing protein [Posttransla	95.1
COG3629	280	DnrI DNA-binding transcriptional activator of the	95.0
PF09613	160	HrpB1_HrpK: Bacterial type III secretion protein (	94.98
PRK11906	458	transcriptional regulator; Provisional	94.97
COG1747	711	Uncharacterized N-terminal domain of the transcrip	94.96
KOG4555	175	consensus TPR repeat-containing protein [Function	94.93
KOG2610	491	consensus Uncharacterized conserved protein [Funct	94.91
PF13428	44	TPR_14: Tetratricopeptide repeat	94.81
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	94.78
COG0457	291	NrfG FOG: TPR repeat [General function prediction	94.61
PF13428	44	TPR_14: Tetratricopeptide repeat	94.58
KOG4570	418	consensus Uncharacterized conserved protein [Funct	94.53
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	94.43
PF09613	160	HrpB1_HrpK: Bacterial type III secretion protein (	94.17
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	94.11
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	94.03
COG0457	291	NrfG FOG: TPR repeat [General function prediction	93.81
KOG4570	418	consensus Uncharacterized conserved protein [Funct	93.71
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	93.7
PF11207	203	DUF2989: Protein of unknown function (DUF2989); In	93.65
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	93.64
PF07079	549	DUF1347: Protein of unknown function (DUF1347); In	93.59
PRK15180	831	Vi polysaccharide biosynthesis protein TviD; Provi	93.43
PF02284	108	COX5A: Cytochrome c oxidase subunit Va; InterPro:	93.42
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	93.33
PRK11906	458	transcriptional regulator; Provisional	93.33
PF02259	352	FAT: FAT domain; InterPro: IPR003151 The FAT domai	93.31
PF00637	143	Clathrin: Region in Clathrin and VPS; InterPro: IP	93.25
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	93.17
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	93.04
COG3118	304	Thioredoxin domain-containing protein [Posttransla	93.03
PF13929	292	mRNA_stabil: mRNA stabilisation	92.96
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	92.96
cd00923	103	Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va.	92.92
PF13431	34	TPR_17: Tetratricopeptide repeat	92.89
PF02284	108	COX5A: Cytochrome c oxidase subunit Va; InterPro:	92.74
COG4785	297	NlpI Lipoprotein NlpI, contains TPR repeats [Gener	92.73
TIGR02561	153	HrpB1_HrpK type III secretion protein HrpB1/HrpK.	92.61
COG1747	711	Uncharacterized N-terminal domain of the transcrip	92.36
PF13431	34	TPR_17: Tetratricopeptide repeat	91.76
KOG4077	149	consensus Cytochrome c oxidase, subunit Va/COX6 [E	91.41
PF13762	145	MNE1: Mitochondrial splicing apparatus component	91.35
KOG1585	308	consensus Protein required for fusion of vesicles	91.15
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	90.93
KOG1550	552	consensus Extracellular protein SEL-1 and related	90.91
cd08819	88	CARD_MDA5_2 Caspase activation and recruitment dom	90.87
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	90.54
cd00923	103	Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va.	90.53
PF00637	143	Clathrin: Region in Clathrin and VPS; InterPro: IP	90.47
PF13934	226	ELYS: Nuclear pore complex assembly	90.37
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	90.17
KOG1550	552	consensus Extracellular protein SEL-1 and related	89.93
PF07079	549	DUF1347: Protein of unknown function (DUF1347); In	89.76
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	89.72
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	89.42
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	88.73
PRK15180	831	Vi polysaccharide biosynthesis protein TviD; Provi	88.14
COG2976	207	Uncharacterized protein conserved in bacteria [Fun	87.68
COG4455	273	ImpE Protein of avirulence locus involved in tempe	87.35
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	87.32
PF06552	186	TOM20_plant: Plant specific mitochondrial import r	87.23
PF13762	145	MNE1: Mitochondrial splicing apparatus component	87.07
TIGR02508	115	type_III_yscG type III secretion protein, YscG fam	86.94
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	86.6
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	86.5
KOG1130	639	consensus Predicted G-alpha GTPase interaction pro	86.49
PF07721	26	TPR_4: Tetratricopeptide repeat; InterPro: IPR0117	86.35
KOG0991	333	consensus Replication factor C, subunit RFC2 [Repl	85.64
COG4785	297	NlpI Lipoprotein NlpI, contains TPR repeats [Gener	85.46
KOG1586	288	consensus Protein required for fusion of vesicles	85.44
KOG4077	149	consensus Cytochrome c oxidase, subunit Va/COX6 [E	85.33
COG4649	221	Uncharacterized protein conserved in bacteria [Fun	85.1
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	85.06
COG2909	894	MalT ATP-dependent transcriptional regulator [Tran	85.01
COG4455	273	ImpE Protein of avirulence locus involved in tempe	84.66
TIGR03504	44	FimV_Cterm FimV C-terminal domain. This protein is	84.54
TIGR02561	153	HrpB1_HrpK type III secretion protein HrpB1/HrpK.	84.14
KOG4234	271	consensus TPR repeat-containing protein [General f	84.13
COG3947	361	Response regulator containing CheY-like receiver a	83.9
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	83.77
PF11848	48	DUF3368: Domain of unknown function (DUF3368); Int	83.66
COG0735	145	Fur Fe2+/Zn2+ uptake regulation proteins [Inorgani	83.31
KOG1130	639	consensus Predicted G-alpha GTPase interaction pro	83.3
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	82.84
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	82.65
KOG0687	393	consensus 26S proteasome regulatory complex, subun	82.57
TIGR03504	44	FimV_Cterm FimV C-terminal domain. This protein is	82.4
COG2976	207	Uncharacterized protein conserved in bacteria [Fun	81.78
PF09670	379	Cas_Cas02710: CRISPR-associated protein (Cas_Cas02	81.54
KOG1585	308	consensus Protein required for fusion of vesicles	81.16
PF11207	203	DUF2989: Protein of unknown function (DUF2989); In	81.15
PF09477	116	Type_III_YscG: Bacterial type II secretion system	80.99
PF11848	48	DUF3368: Domain of unknown function (DUF3368); Int	80.98
COG0735	145	Fur Fe2+/Zn2+ uptake regulation proteins [Inorgani	80.6
KOG4648	536	consensus Uncharacterized conserved protein, conta	80.21
PF02259	352	FAT: FAT domain; InterPro: IPR003151 The FAT domai	80.11
PF11846	193	DUF3366: Domain of unknown function (DUF3366); Int	80.03

>PLN03218 maturation of RBCL 1; Provisional

Probab=100.00  E-value=5.6e-41  Score=304.74  Aligned_cols=253  Identities=14%  Similarity=0.203  Sum_probs=152.2

Q ss_pred             CCCCcccccccCCchh----hHHHHHHHhhcC--------chHHHHHH--hcCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 036275           16 RAPHSWNFNYLPYPSH----FMLINFLLLQHT--------PNLFVFIF--SIYFSDAHAVFEEMKRLGITPTMKSHMLLL   81 (271)
Q Consensus        16 ~~~~~~~~~~~~~~~~----~~~~~f~~~~~~--------y~~ll~~~--~g~~~~A~~~~~~~~~~~~~~~~~~~~~li   81 (271)
                      ++...|+.++..+...    .+..+|+.|...        |+.+|.+|  .|++++|.++|++|.+.|+.||..+|+.+|
T Consensus       470 pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI  549 (1060)
T PLN03218        470 ADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALI  549 (1060)
T ss_pred             CCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence            3444555555554444    255566666532        66666666  666666666666666666666666666666


Q ss_pred             HHHHhcCChHHHHHHHHHHHH--CCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCC
Q 036275           82 TAYSKTGNVAKCEGVINQMHK--SGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGF  159 (271)
Q Consensus        82 ~~~~~~~~~~~a~~~~~~m~~--~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~  159 (271)
                      .+|++.|++++|.++|++|..  .|+.||..+|+++|.+|++.|++++|.++|++|.+.|++|+..+|+.+|.+|++.|+
T Consensus       550 ~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~  629 (1060)
T PLN03218        550 SACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGD  629 (1060)
T ss_pred             HHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCC
Confidence            666666666666666666654  355666666666666666666666666666666666666666666666666666666


Q ss_pred             HHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHH
Q 036275          160 IEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRT  239 (271)
Q Consensus       160 ~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~  239 (271)
                      +++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.+++++|.+.|+.||..+|+.+|.+|++.|++++|.++|++
T Consensus       630 ~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~e  709 (1060)
T PLN03218        630 WDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYED  709 (1060)
T ss_pred             HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence            66666666666666666666666666666666666666666666666666666666666666666666666666666666


Q ss_pred             HHhcc----cchhHHHHHHHhhccccccchhhh
Q 036275          240 MHKDM----KTALPIYFNLYGEKGVARSNLGQY  268 (271)
Q Consensus       240 ~~~~~----~~~~~~~~~~~~~~G~~~~a~~~~  268 (271)
                      |.+.+    ...++.++.+|++.|+.++|++.|
T Consensus       710 M~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf  742 (1060)
T PLN03218        710 IKSIKLRPTVSTMNALITALCEGNQLPKALEVL  742 (1060)
T ss_pred             HHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence            65432    223455566666666666665554

>PLN03218 maturation of RBCL 1; Provisional

Probab=100.00  E-value=6.2e-41  Score=304.48  Aligned_cols=254  Identities=19%  Similarity=0.272  Sum_probs=227.7

Q ss_pred             CCCCcccccccCCchh----hHHHHHHHhhcC--------chHHHHHH--hcCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 036275           16 RAPHSWNFNYLPYPSH----FMLINFLLLQHT--------PNLFVFIF--SIYFSDAHAVFEEMKRLGITPTMKSHMLLL   81 (271)
Q Consensus        16 ~~~~~~~~~~~~~~~~----~~~~~f~~~~~~--------y~~ll~~~--~g~~~~A~~~~~~~~~~~~~~~~~~~~~li   81 (271)
                      ++...|+.++..+...    .+..+|+.|...        ||.+|.+|  .|++++|.++|++|.+.|+.||..+|+.+|
T Consensus       435 pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI  514 (1060)
T PLN03218        435 PTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALI  514 (1060)
T ss_pred             CCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence            4555666666655544    477888888764        99999999  999999999999999999999999999999


Q ss_pred             HHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHh--CCCCCChhhHHHHHHHHHcCCC
Q 036275           82 TAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEK--GSYAADISTYNILINIYGRGGF  159 (271)
Q Consensus        82 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~--~~~~~~~~~~~~li~~~~~~g~  159 (271)
                      .+|++.|++++|+++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+  .|+.||..+|+++|.+|++.|+
T Consensus       515 ~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~  594 (1060)
T PLN03218        515 DGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQ  594 (1060)
T ss_pred             HHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCC
Confidence            99999999999999999999999999999999999999999999999999999976  5788999999999999999999


Q ss_pred             HHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHH
Q 036275          160 IEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRT  239 (271)
Q Consensus       160 ~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~  239 (271)
                      +++|.++|++|.+.|+.|+..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|.+.|++++|.+++++
T Consensus       595 ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~e  674 (1060)
T PLN03218        595 VDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQD  674 (1060)
T ss_pred             HHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhcccc----hhHHHHHHHhhccccccchhhhh
Q 036275          240 MHKDMKT----ALPIYFNLYGEKGVARSNLGQYI  269 (271)
Q Consensus       240 ~~~~~~~----~~~~~~~~~~~~G~~~~a~~~~~  269 (271)
                      |.+.+..    .+..++++|++.|+.++|.+.|-
T Consensus       675 M~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~  708 (1060)
T PLN03218        675 ARKQGIKLGTVSYSSLMGACSNAKNWKKALELYE  708 (1060)
T ss_pred             HHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence            9987654    46778899999999999988763

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=100.00  E-value=2e-38  Score=283.90  Aligned_cols=249  Identities=16%  Similarity=0.201  Sum_probs=211.6

Q ss_pred             hcCCCCcccccccCCchh----hHHHHHHHhhcC----chHHHHHH--hcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 036275           14 AQRAPHSWNFNYLPYPSH----FMLINFLLLQHT----PNLFVFIF--SIYFSDAHAVFEEMKRLGITPTMKSHMLLLTA   83 (271)
Q Consensus        14 ~~~~~~~~~~~~~~~~~~----~~~~~f~~~~~~----y~~ll~~~--~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~   83 (271)
                      ...+...|+.++..|...    .|..+|+.|+..    ||++|.+|  .|++++|+++|++|.+.|+.||..||+.++.+
T Consensus       255 ~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a  334 (697)
T PLN03081        255 VVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRI  334 (697)
T ss_pred             CCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence            445667777777777755    488899999876    99999999  99999999999999999999999999999999


Q ss_pred             HHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHH
Q 036275           84 YSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKM  163 (271)
Q Consensus        84 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a  163 (271)
                      |++.|++++|.+++..|.+.|+.||..+|++||++|++.|++++|.++|++|.+    ||..+||+||.+|++.|+.++|
T Consensus       335 ~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~----~d~~t~n~lI~~y~~~G~~~~A  410 (697)
T PLN03081        335 FSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR----KNLISWNALIAGYGNHGRGTKA  410 (697)
T ss_pred             HHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC----CCeeeHHHHHHHHHHcCCHHHH
Confidence            999999999999999999999999999999999999999999999999998854    6888999999999999999999


Q ss_pred             HHHHHhchhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHh
Q 036275          164 EGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMID-AGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHK  242 (271)
Q Consensus       164 ~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~  242 (271)
                      .++|++|.+.|+.||..||+.+|.+|++.|+.++|.++|+.|.+ .|+.|+..+|+.++.++.+.|++++|.+++++|..
T Consensus       411 ~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~~~  490 (697)
T PLN03081        411 VEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPF  490 (697)
T ss_pred             HHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHCCC
Confidence            99999999999999999999999999999999999999999976 68889988899999999888999988888887742


Q ss_pred             -cccchhHHHHHHHhhccccccchh
Q 036275          243 -DMKTALPIYFNLYGEKGVARSNLG  266 (271)
Q Consensus       243 -~~~~~~~~~~~~~~~~G~~~~a~~  266 (271)
                       .+...+..++.+|...|+.+.|..
T Consensus       491 ~p~~~~~~~Ll~a~~~~g~~~~a~~  515 (697)
T PLN03081        491 KPTVNMWAALLTACRIHKNLELGRL  515 (697)
T ss_pred             CCCHHHHHHHHHHHHHcCCcHHHHH
Confidence             223345555555555555554433

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=100.00  E-value=2.4e-38  Score=283.41  Aligned_cols=253  Identities=17%  Similarity=0.202  Sum_probs=229.1

Q ss_pred             hhcCCCCcccccccCCchh----hHHHHHHHhhcC----chHHHHHH--hcCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 036275           13 VAQRAPHSWNFNYLPYPSH----FMLINFLLLQHT----PNLFVFIF--SIYFSDAHAVFEEMKRLGITPTMKSHMLLLT   82 (271)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~----~~~~~f~~~~~~----y~~ll~~~--~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~   82 (271)
                      +..++...|+.++..|...    .|+.+|+.|+..    ||++|.+|  .|++++|+++|++|.+.|+.|+..+|+.++.
T Consensus       153 g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~  232 (697)
T PLN03081        153 GFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLR  232 (697)
T ss_pred             CCCcchHHHHHHHHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHH
Confidence            3456777788888777765    488999999986    99999999  9999999999999999999999999999999


Q ss_pred             HHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHH
Q 036275           83 AYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEK  162 (271)
Q Consensus        83 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~  162 (271)
                      +|++.|..+.+.+++..+.+.|+.||..+|++||++|++.|++++|.++|++|.+    +|..+||++|.+|++.|+.++
T Consensus       233 a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~~~vt~n~li~~y~~~g~~~e  308 (697)
T PLN03081        233 ASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE----KTTVAWNSMLAGYALHGYSEE  308 (697)
T ss_pred             HHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCC----CChhHHHHHHHHHHhCCCHHH
Confidence            9999999999999999999999999999999999999999999999999998854    588899999999999999999


Q ss_pred             HHHHHHhchhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHh
Q 036275          163 MEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHK  242 (271)
Q Consensus       163 a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~  242 (271)
                      |.++|++|.+.|+.||..||+.++.+|++.|++++|.+++..|.+.|+.||..+|+.|+.+|++.|++++|.++|++|.+
T Consensus       309 A~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~  388 (697)
T PLN03081        309 ALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR  388 (697)
T ss_pred             HHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999988


Q ss_pred             cccchhHHHHHHHhhccccccchhhhh
Q 036275          243 DMKTALPIYFNLYGEKGVARSNLGQYI  269 (271)
Q Consensus       243 ~~~~~~~~~~~~~~~~G~~~~a~~~~~  269 (271)
                      .+...++.++.+|++.|+.++|++.|-
T Consensus       389 ~d~~t~n~lI~~y~~~G~~~~A~~lf~  415 (697)
T PLN03081        389 KNLISWNALIAGYGNHGRGTKAVEMFE  415 (697)
T ss_pred             CCeeeHHHHHHHHHHcCCHHHHHHHHH
Confidence            888889999999999999999988763

>PLN03077 Protein ECB2; Provisional

Probab=100.00  E-value=7.9e-38  Score=285.96  Aligned_cols=253  Identities=17%  Similarity=0.159  Sum_probs=240.6

Q ss_pred             hhcCCCCcccccccCCchh----hHHHHHHHhhcC----chHHHHHH--hcCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 036275           13 VAQRAPHSWNFNYLPYPSH----FMLINFLLLQHT----PNLFVFIF--SIYFSDAHAVFEEMKRLGITPTMKSHMLLLT   82 (271)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~----~~~~~f~~~~~~----y~~ll~~~--~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~   82 (271)
                      +..++...++.++..+...    .|..+|++|+..    ||++|.+|  .|++++|+++|++|.+.|+.||..||+.++.
T Consensus       217 g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~  296 (857)
T PLN03077        217 GFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVIS  296 (857)
T ss_pred             CCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHH
Confidence            3456777788888877655    588999999886    99999999  9999999999999999999999999999999


Q ss_pred             HHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHH
Q 036275           83 AYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEK  162 (271)
Q Consensus        83 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~  162 (271)
                      +|++.|+.+.+.+++..|.+.|+.||..+|++||.+|++.|++++|.++|++|.    .||..+|+++|.+|++.|++++
T Consensus       297 a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~d~~s~n~li~~~~~~g~~~~  372 (857)
T PLN03077        297 ACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRME----TKDAVSWTAMISGYEKNGLPDK  372 (857)
T ss_pred             HHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCC----CCCeeeHHHHHHHHHhCCCHHH
Confidence            999999999999999999999999999999999999999999999999999995    4789999999999999999999


Q ss_pred             HHHHHHhchhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHh
Q 036275          163 MEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHK  242 (271)
Q Consensus       163 a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~  242 (271)
                      |.++|++|.+.|+.||..||+.++.+|++.|++++|.++++.|.+.|+.|+..+|+.|+.+|.+.|++++|.++|++|.+
T Consensus       373 A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~  452 (857)
T PLN03077        373 ALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPE  452 (857)
T ss_pred             HHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccchhHHHHHHHhhccccccchhhhh
Q 036275          243 DMKTALPIYFNLYGEKGVARSNLGQYI  269 (271)
Q Consensus       243 ~~~~~~~~~~~~~~~~G~~~~a~~~~~  269 (271)
                      .+...++.++..|.+.|+.++|++.|.
T Consensus       453 ~d~vs~~~mi~~~~~~g~~~eA~~lf~  479 (857)
T PLN03077        453 KDVISWTSIIAGLRLNNRCFEALIFFR  479 (857)
T ss_pred             CCeeeHHHHHHHHHHCCCHHHHHHHHH
Confidence            999999999999999999999998773

>PLN03077 Protein ECB2; Provisional

Probab=100.00  E-value=8.2e-37  Score=279.29  Aligned_cols=249  Identities=18%  Similarity=0.220  Sum_probs=234.5

Q ss_pred             CCCcccccccCCchh----hHHHHHHHhhcC----chHHHHHH--hcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 036275           17 APHSWNFNYLPYPSH----FMLINFLLLQHT----PNLFVFIF--SIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSK   86 (271)
Q Consensus        17 ~~~~~~~~~~~~~~~----~~~~~f~~~~~~----y~~ll~~~--~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~   86 (271)
                      +...++.++..+...    .+..+|+.|+..    ||++|.+|  .|++++|+++|++|...|+.||..||+.++.+|+.
T Consensus       120 ~~~~~n~li~~~~~~g~~~~A~~~f~~m~~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~  199 (857)
T PLN03077        120 GVRLGNAMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGG  199 (857)
T ss_pred             CchHHHHHHHHHHhCCChHHHHHHHhcCCCCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCC
Confidence            344455666555443    488999999986    99999999  99999999999999999999999999999999999


Q ss_pred             cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHH
Q 036275           87 TGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGL  166 (271)
Q Consensus        87 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~  166 (271)
                      .+++..+.+++..|.+.|+.||..+++++|.+|++.|++++|.++|++|.+    ||..+||++|.+|++.|+.++|.++
T Consensus       200 ~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~----~d~~s~n~li~~~~~~g~~~eAl~l  275 (857)
T PLN03077        200 IPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPR----RDCISWNAMISGYFENGECLEGLEL  275 (857)
T ss_pred             ccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCC----CCcchhHHHHHHHHhCCCHHHHHHH
Confidence            999999999999999999999999999999999999999999999999964    6889999999999999999999999


Q ss_pred             HHhchhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhcccc
Q 036275          167 FQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKDMKT  246 (271)
Q Consensus       167 ~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~  246 (271)
                      |++|...|+.||..||+.+|.+|++.|+.+.|.+++..|.+.|+.||..+|+.++.+|.+.|++++|.++|++|.+.+..
T Consensus       276 f~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~  355 (857)
T PLN03077        276 FFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAV  355 (857)
T ss_pred             HHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCee
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHhhccccccchhhhh
Q 036275          247 ALPIYFNLYGEKGVARSNLGQYI  269 (271)
Q Consensus       247 ~~~~~~~~~~~~G~~~~a~~~~~  269 (271)
                      .++.++.+|.+.|+.++|++.|.
T Consensus       356 s~n~li~~~~~~g~~~~A~~lf~  378 (857)
T PLN03077        356 SWTAMISGYEKNGLPDKALETYA  378 (857)
T ss_pred             eHHHHHHHHHhCCCHHHHHHHHH
Confidence            99999999999999999998874

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=99.80  E-value=6.8e-17  Score=136.07  Aligned_cols=221  Identities=12%  Similarity=0.076  Sum_probs=150.4

Q ss_pred             chHHHHHH--hcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH----HHHHHHHH
Q 036275           44 PNLFVFIF--SIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDT----FVINSMLN  117 (271)
Q Consensus        44 y~~ll~~~--~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~----~~~~~li~  117 (271)
                      |..+...|  .|++++|.++|+++.+.. +.+..++..++..+.+.|++++|.+.++++.+.+..++.    ..+..+..
T Consensus       110 ~~~La~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~  188 (389)
T PRK11788        110 LQELGQDYLKAGLLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQ  188 (389)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHH
Confidence            34445555  778888888888877653 456677777888888888888888888877766433221    23455666


Q ss_pred             HHHccCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 036275          118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRR  197 (271)
Q Consensus       118 ~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~  197 (271)
                      .+.+.|++++|...++++.+.. +.+...+..+...+.+.|++++|.++|+++...+......+++.++.+|...|++++
T Consensus       189 ~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~  267 (389)
T PRK11788        189 QALARGDLDAARALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAE  267 (389)
T ss_pred             HHHhCCCHHHHHHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHH
Confidence            7777888888888888877653 334566777778888888888888888887765322224567777788888888888


Q ss_pred             HHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhcccchhH--HHHHHHhh---ccccccchhhh
Q 036275          198 CLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKDMKTALP--IYFNLYGE---KGVARSNLGQY  268 (271)
Q Consensus       198 a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~~~~~---~G~~~~a~~~~  268 (271)
                      |...++++.+.  .|+...+..+...+.+.|++++|..+++++.+..+....  .++..+..   .|..+++++.+
T Consensus       268 A~~~l~~~~~~--~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~  341 (389)
T PRK11788        268 GLEFLRRALEE--YPGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHRLLDYHLAEAEEGRAKESLLLL  341 (389)
T ss_pred             HHHHHHHHHHh--CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHHHHHhhhccCCccchhHHHHH
Confidence            88888887765  356666677777788888888888888877766544332  23444332   44666666544

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=99.79  E-value=1.5e-16  Score=133.99  Aligned_cols=223  Identities=13%  Similarity=0.052  Sum_probs=131.7

Q ss_pred             chHHHHHH--hcCHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 036275           44 PNLFVFIF--SIYFSDAHAVFEEMKRLGITPT---MKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNL  118 (271)
Q Consensus        44 y~~ll~~~--~g~~~~A~~~~~~~~~~~~~~~---~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~  118 (271)
                      |..+...+  .|++++|..+++.+.+....++   ...+..+...|.+.|++++|..+|+++.+.. +.+..++..++..
T Consensus        72 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~  150 (389)
T PRK11788         72 HLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLDRAEELFLQLVDEG-DFAEGALQQLLEI  150 (389)
T ss_pred             HHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCC-cchHHHHHHHHHH
Confidence            44444444  6677777777766665431111   2345666666666677777777776666542 2345566666677


Q ss_pred             HHccCCHhHHHHHHHHHHhCCCCCC----hhhHHHHHHHHHcCCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCC
Q 036275          119 YGRLGQFEKMEEVLTAMEKGSYAAD----ISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKL  194 (271)
Q Consensus       119 ~~~~g~~~~a~~~~~~m~~~~~~~~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~  194 (271)
                      +.+.|++++|.+.++.+.+.+-.+.    ...+..+...+.+.|++++|.+.|+++.+.. +.+...+..+...+.+.|+
T Consensus       151 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~  229 (389)
T PRK11788        151 YQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAAD-PQCVRASILLGDLALAQGD  229 (389)
T ss_pred             HHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHC-cCCHHHHHHHHHHHHHCCC
Confidence            7777777777777776665432111    1134455566666777777777777666542 1234456666666777777


Q ss_pred             HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhcccch--hHHHHHHHhhccccccchhhh
Q 036275          195 YRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKDMKTA--LPIYFNLYGEKGVARSNLGQY  268 (271)
Q Consensus       195 ~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~~~~~G~~~~a~~~~  268 (271)
                      +++|.+.++++.+.+......++..+..++...|++++|...++++.+..+..  ...+..+|.+.|+.++|+..+
T Consensus       230 ~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~la~~~~~~g~~~~A~~~l  305 (389)
T PRK11788        230 YAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEYPGADLLLALAQLLEEQEGPEAAQALL  305 (389)
T ss_pred             HHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhCCHHHHHHHH
Confidence            77777777776654312123455666666777777777777777766543322  233455566777777766654

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=99.72  E-value=1e-14  Score=134.73  Aligned_cols=187  Identities=13%  Similarity=0.092  Sum_probs=87.4

Q ss_pred             hcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHhHHHHH
Q 036275           52 SIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEV  131 (271)
Q Consensus        52 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~  131 (271)
                      .|++++|.+.|+++.+.+ +.+...+..+..++.+.|++++|..+|+++.+.. +.+..++..+...+...|++++|.++
T Consensus       614 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~  691 (899)
T TIGR02917       614 AGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKI  691 (899)
T ss_pred             cCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence            444444444444444432 2334444444444444444444444444444432 12334444444444444444444444


Q ss_pred             HHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 036275          132 LTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCY  211 (271)
Q Consensus       132 ~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~  211 (271)
                      ++.+.+.. +.+...+..+...+...|++++|.+.|+.+...  .|+..++..+...+...|++++|.+.++.+.+.. +
T Consensus       692 ~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-~  767 (899)
T TIGR02917       692 AKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKR--APSSQNAIKLHRALLASGNTAEAVKTLEAWLKTH-P  767 (899)
T ss_pred             HHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-C
Confidence            44444432 333444444555555555555555555554443  2333444444455555555555555555544432 3


Q ss_pred             CCHHHHHHHHHHHhccCcHHHHHHHHHHHHhcc
Q 036275          212 PDGGTAKVLISACSSEDQIEQVTTLVRTMHKDM  244 (271)
Q Consensus       212 p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~  244 (271)
                      .+...+..+...+...|+.++|.++|+++.+..
T Consensus       768 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~  800 (899)
T TIGR02917       768 NDAVLRTALAELYLAQKDYDKAIKHYRTVVKKA  800 (899)
T ss_pred             CCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC
Confidence            344444455555555555555555555554443

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=99.71  E-value=1.9e-14  Score=132.94  Aligned_cols=217  Identities=12%  Similarity=0.135  Sum_probs=127.6

Q ss_pred             HHHHHH--hcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC
Q 036275           46 LFVFIF--SIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLG  123 (271)
Q Consensus        46 ~ll~~~--~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g  123 (271)
                      .+...|  .|++++|.++++.+.+.. +.+...|..+..++...|++++|...|+++.+.. +.+...+..+...+...|
T Consensus       572 ~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~  649 (899)
T TIGR02917       572 ALAQYYLGKGQLKKALAILNEAADAA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMK  649 (899)
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcC
Confidence            344444  555666666665555433 4455556666666666666666666666655543 224445555666666666


Q ss_pred             CHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 036275          124 QFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFE  203 (271)
Q Consensus       124 ~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~  203 (271)
                      ++++|..+++++.+.. +.+..++..++..+...|++++|.++++.+...+ +.+...+..+...+...|++++|.+.++
T Consensus       650 ~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~  727 (899)
T TIGR02917       650 NYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYR  727 (899)
T ss_pred             CHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHH
Confidence            6666666666655542 3345566666666666666666666666665543 2345556666666666777777777776


Q ss_pred             HHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhcccchh---HHHHHHHhhccccccchhhh
Q 036275          204 EMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKDMKTAL---PIYFNLYGEKGVARSNLGQY  268 (271)
Q Consensus       204 ~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~~~~~G~~~~a~~~~  268 (271)
                      .+.+.+  |+..++..+..++...|++++|.+.++++.+..+...   ..+..+|...|+.++|++.|
T Consensus       728 ~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~  793 (899)
T TIGR02917       728 KALKRA--PSSQNAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHY  793 (899)
T ss_pred             HHHhhC--CCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHH
Confidence            666543  4445566666666777777777777776665544332   23345566777777776655

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=99.60  E-value=2e-12  Score=115.27  Aligned_cols=151  Identities=7%  Similarity=-0.006  Sum_probs=86.6

Q ss_pred             HHHHHHccCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHH----HHHHHHhchhCCCCCCHHHHHHHHHHHH
Q 036275          115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEK----MEGLFQSLPAKRLKPDVVTWTSRLAAYS  190 (271)
Q Consensus       115 li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~----a~~~~~~m~~~g~~~~~~~~~~li~~~~  190 (271)
                      +...+...|++++|+..+++..+.. +.+...+..+...+...|++++    |...|++..... +.+...+..+...+.
T Consensus       218 l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~  295 (656)
T PRK15174        218 AVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFN-SDNVRIVTLYADALI  295 (656)
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHH
Confidence            3444455555555555555555442 3344555556666666666654    566666655542 123456666666666


Q ss_pred             hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhcccchhHH---HHHHHhhccccccchhh
Q 036275          191 RKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKDMKTALPI---YFNLYGEKGVARSNLGQ  267 (271)
Q Consensus       191 ~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~---~~~~~~~~G~~~~a~~~  267 (271)
                      ..|++++|...+++..+.. +-+...+..+..++...|++++|...++++.+..+.....   ...++...|+.++|++.
T Consensus       296 ~~g~~~eA~~~l~~al~l~-P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~  374 (656)
T PRK15174        296 RTGQNEKAIPLLQQSLATH-PDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESV  374 (656)
T ss_pred             HCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHH
Confidence            7777777777777666542 2234455556666667777777777777666554443222   23446677777777665


Q ss_pred             h
Q 036275          268 Y  268 (271)
Q Consensus       268 ~  268 (271)
                      |
T Consensus       375 l  375 (656)
T PRK15174        375 F  375 (656)
T ss_pred             H
Confidence            5

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=99.59  E-value=2.3e-12  Score=114.72  Aligned_cols=221  Identities=12%  Similarity=-0.015  Sum_probs=174.1

Q ss_pred             chHHHHHH--hcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 036275           44 PNLFVFIF--SIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGR  121 (271)
Q Consensus        44 y~~ll~~~--~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~  121 (271)
                      |+.+-..+  .|++++|+..|++..+.. +-....|..+...+...|++++|...|++..+.. +-+...|..+...+..
T Consensus       334 ~~~lg~~~~~~g~~~eA~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~  411 (615)
T TIGR00990       334 LNLRGTFKCLKGKHLEALADLSKSIELD-PRVTQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFI  411 (615)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence            44444444  899999999999998765 4457788899999999999999999999998874 3357788899999999


Q ss_pred             cCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 036275          122 LGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEI  201 (271)
Q Consensus       122 ~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~  201 (271)
                      .|++++|...|++..+.. +.+...+..+..++.+.|++++|+..|++..... +-+...|+.+...+...|++++|.+.
T Consensus       412 ~g~~~~A~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~  489 (615)
T TIGR00990       412 KGEFAQAGKDYQKSIDLD-PDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNF-PEAPDVYNYYGELLLDQNKFDEAIEK  489 (615)
T ss_pred             cCCHHHHHHHHHHHHHcC-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHH
Confidence            999999999999998863 4567788889999999999999999999988652 23577899999999999999999999


Q ss_pred             HHHHHHCCCCCCH------HHHHHHHHHHhccCcHHHHHHHHHHHHhcccchh---HHHHHHHhhccccccchhhh
Q 036275          202 FEEMIDAGCYPDG------GTAKVLISACSSEDQIEQVTTLVRTMHKDMKTAL---PIYFNLYGEKGVARSNLGQY  268 (271)
Q Consensus       202 ~~~m~~~~~~p~~------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~~~~~G~~~~a~~~~  268 (271)
                      |++..+..-..+.      ..+......+...|++++|.+++++..+..+...   ..+..+|...|+.++|+..|
T Consensus       490 ~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~  565 (615)
T TIGR00990       490 FDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLF  565 (615)
T ss_pred             HHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHH
Confidence            9998775311111      1112222234456999999999999876655443   44567799999999998876

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=99.59  E-value=3.1e-12  Score=114.09  Aligned_cols=212  Identities=9%  Similarity=-0.009  Sum_probs=117.1

Q ss_pred             hcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHhHHHHH
Q 036275           52 SIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEV  131 (271)
Q Consensus        52 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~  131 (271)
                      .|++++|.+.++++.+.. +.+...+..+...+...|++++|...++++...... +...+..+ ..+...|++++|...
T Consensus       123 ~g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~-~~~a~~~~-~~l~~~g~~~eA~~~  199 (656)
T PRK15174        123 SKQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPP-RGDMIATC-LSFLNKSRLPEDHDL  199 (656)
T ss_pred             cCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCC-CHHHHHHH-HHHHHcCCHHHHHHH
Confidence            555555555555554432 333444445555555555555555555544433221 11122122 224455555555555


Q ss_pred             HHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCCHHH----HHHHHHHHHH
Q 036275          132 LTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRR----CLEIFEEMID  207 (271)
Q Consensus       132 ~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~----a~~~~~~m~~  207 (271)
                      ++.+.+..-.++......+..++.+.|++++|...+++..... +.+...+..+...+...|++++    |...+++..+
T Consensus       200 ~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~  278 (656)
T PRK15174        200 ARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQ  278 (656)
T ss_pred             HHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHh
Confidence            5555443211223333444555666666666666666665542 2235556666677777777764    6777777666


Q ss_pred             CCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhcccchh---HHHHHHHhhccccccchhhh
Q 036275          208 AGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKDMKTAL---PIYFNLYGEKGVARSNLGQY  268 (271)
Q Consensus       208 ~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~~~~~G~~~~a~~~~  268 (271)
                      .. +.+...+..+...+...|++++|...+++..+..+...   ..+..+|.+.|+.++|++.|
T Consensus       279 l~-P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l  341 (656)
T PRK15174        279 FN-SDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEF  341 (656)
T ss_pred             hC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence            42 33456677777777777888888888777776554433   33455677788888877765

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=99.56  E-value=8.3e-12  Score=97.05  Aligned_cols=196  Identities=9%  Similarity=0.045  Sum_probs=161.3

Q ss_pred             chHHHHHH--hcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 036275           44 PNLFVFIF--SIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGR  121 (271)
Q Consensus        44 y~~ll~~~--~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~  121 (271)
                      +..+...+  .|++++|.+.+++..+.. +.+...+..+...+...|++++|.+.+++..+... .+...+..+...+..
T Consensus        34 ~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~~~~~~~~  111 (234)
T TIGR02521        34 RVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLNP-NNGDVLNNYGTFLCQ  111 (234)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHH
Confidence            44555555  999999999999998765 55688888999999999999999999999988753 356678888899999


Q ss_pred             cCCHhHHHHHHHHHHhCCC-CCChhhHHHHHHHHHcCCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 036275          122 LGQFEKMEEVLTAMEKGSY-AADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLE  200 (271)
Q Consensus       122 ~g~~~~a~~~~~~m~~~~~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~  200 (271)
                      .|++++|.+.+++..+... +.....+..+...+...|++++|.+.+++..... +.+...+..+...+...|++++|..
T Consensus       112 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~  190 (234)
T TIGR02521       112 QGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRGQYKDARA  190 (234)
T ss_pred             cccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcCCHHHHHH
Confidence            9999999999999887532 2345667778899999999999999999988753 2246678888999999999999999


Q ss_pred             HHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhc
Q 036275          201 IFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKD  243 (271)
Q Consensus       201 ~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~  243 (271)
                      .+++..+. .+.+...+..+...+...|+.++|..+.+.+.+.
T Consensus       191 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~  232 (234)
T TIGR02521       191 YLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQKL  232 (234)
T ss_pred             HHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence            99998876 3456677777888888999999999998887654

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=99.53  E-value=7.8e-14  Score=112.22  Aligned_cols=218  Identities=16%  Similarity=0.132  Sum_probs=107.9

Q ss_pred             chHHHHHH--hcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 036275           44 PNLFVFIF--SIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGR  121 (271)
Q Consensus        44 y~~ll~~~--~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~  121 (271)
                      |..+....  .++++.|.+.++++.+.+ +-++..+..++.. ...+++++|.+++.+..+.  .++...+..++..+..
T Consensus        47 ~~~~a~La~~~~~~~~A~~ay~~l~~~~-~~~~~~~~~l~~l-~~~~~~~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~  122 (280)
T PF13429_consen   47 WRLLADLAWSLGDYDEAIEAYEKLLASD-KANPQDYERLIQL-LQDGDPEEALKLAEKAYER--DGDPRYLLSALQLYYR  122 (280)
T ss_dssp             ---------------------------------------------------------------------------H-HHH
T ss_pred             cccccccccccccccccccccccccccc-ccccccccccccc-ccccccccccccccccccc--ccccchhhHHHHHHHH
Confidence            44444444  899999999999998876 3367778788877 7889999999998877665  3566777888899999


Q ss_pred             cCCHhHHHHHHHHHHhCC-CCCChhhHHHHHHHHHcCCCHHHHHHHHHhchhCCCCC-CHHHHHHHHHHHHhcCCHHHHH
Q 036275          122 LGQFEKMEEVLTAMEKGS-YAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP-DVVTWTSRLAAYSRKKLYRRCL  199 (271)
Q Consensus       122 ~g~~~~a~~~~~~m~~~~-~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~-~~~~~~~li~~~~~~g~~~~a~  199 (271)
                      .++++++.++++.+.+.. .+.+...|..+...+.+.|+.++|.+.+++..+.  .| |......++..+...|+.+++.
T Consensus       123 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~--~P~~~~~~~~l~~~li~~~~~~~~~  200 (280)
T PF13429_consen  123 LGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALEL--DPDDPDARNALAWLLIDMGDYDEAR  200 (280)
T ss_dssp             TT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH---TT-HHHHHHHHHHHCTTCHHHHHH
T ss_pred             HhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHCCChHHHH
Confidence            999999999999977542 3467788889999999999999999999999886  45 4778888999999999999999


Q ss_pred             HHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhcccchh---HHHHHHHhhccccccchhhh
Q 036275          200 EIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKDMKTAL---PIYFNLYGEKGVARSNLGQY  268 (271)
Q Consensus       200 ~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~~~~~G~~~~a~~~~  268 (271)
                      ++++...... +.|...+..+..++...|+.++|..++++..+..+..+   ..+.+++...|+.++|.+.+
T Consensus       201 ~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~~~A~~~~  271 (280)
T PF13429_consen  201 EALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPLWLLAYADALEQAGRKDEALRLR  271 (280)
T ss_dssp             HHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT------------
T ss_pred             HHHHHHHHHC-cCHHHHHHHHHHHhccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            9998887653 45556778889999999999999999999988665544   44667799999999998764

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=99.53  E-value=7.9e-12  Score=111.33  Aligned_cols=213  Identities=12%  Similarity=-0.019  Sum_probs=172.4

Q ss_pred             hcCHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHhHHH
Q 036275           52 SIYFSDAHAVFEEMKRLG--ITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKME  129 (271)
Q Consensus        52 ~g~~~~A~~~~~~~~~~~--~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~  129 (271)
                      .+++++|.+.|++..+.+  .+.....|..+...+...|++++|+..+++..+.. +-....|..+...+...|++++|.
T Consensus       307 ~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~  385 (615)
T TIGR00990       307 DESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD-PRVTQSYIKRASMNLELGDPDKAE  385 (615)
T ss_pred             hhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHCCCHHHHH
Confidence            468999999999998765  23456778888899999999999999999998873 224567888899999999999999


Q ss_pred             HHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 036275          130 EVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAG  209 (271)
Q Consensus       130 ~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~  209 (271)
                      ..|+...+.. +.+..+|..+...+...|++++|.+.|++..... +.+...+..+...+.+.|++++|...+++.....
T Consensus       386 ~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~  463 (615)
T TIGR00990       386 EDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNF  463 (615)
T ss_pred             HHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence            9999998863 4568899999999999999999999999988763 2246678888899999999999999999988752


Q ss_pred             CCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhcccchhHH----------HHHHHhhccccccchhhh
Q 036275          210 CYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKDMKTALPI----------YFNLYGEKGVARSNLGQY  268 (271)
Q Consensus       210 ~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~----------~~~~~~~~G~~~~a~~~~  268 (271)
                       +-+...+..+...+...|++++|.+.|++..+..+.....          ....|...|++++|++.+
T Consensus       464 -P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~  531 (615)
T TIGR00990       464 -PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLC  531 (615)
T ss_pred             -CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence             4457788889999999999999999999987654322111          112344468888887765

>KOG4422 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.51  E-value=7.9e-12  Score=100.92  Aligned_cols=209  Identities=17%  Similarity=0.277  Sum_probs=152.3

Q ss_pred             hHHHHHHHhhcC---chHHHHHH--hcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCC
Q 036275           32 FMLINFLLLQHT---PNLFVFIF--SIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLK  106 (271)
Q Consensus        32 ~~~~~f~~~~~~---y~~ll~~~--~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~  106 (271)
                      .|..+|+..|+.   |.++|.+.  --..++|.+++++-....++.+..+||.+|.+-+-..+    .++..+|......
T Consensus       195 vAdL~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~----K~Lv~EMisqkm~  270 (625)
T KOG4422|consen  195 VADLLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVG----KKLVAEMISQKMT  270 (625)
T ss_pred             HHHHHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhcc----HHHHHHHHHhhcC
Confidence            466788888886   99999998  77899999999999888778899999999987665433    6788899999999


Q ss_pred             CCHHHHHHHHHHHHccCCHhH----HHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHH-HHHHHHhc----hhCCCCC
Q 036275          107 PDTFVINSMLNLYGRLGQFEK----MEEVLTAMEKGSYAADISTYNILINIYGRGGFIEK-MEGLFQSL----PAKRLKP  177 (271)
Q Consensus       107 ~~~~~~~~li~~~~~~g~~~~----a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~-a~~~~~~m----~~~g~~~  177 (271)
                      ||..|+|+++.+..+.|+++.    |.+++.+|++.|+.|+..+|..+|..+++.++..+ +..++.++    ..+.++|
T Consensus       271 Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp  350 (625)
T KOG4422|consen  271 PNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKP  350 (625)
T ss_pred             CchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccC
Confidence            999999999999999998765    45778889999999999999999999998888754 33333332    2222222


Q ss_pred             ----CHHHHHHHHHHHHhcCCHH------------------------------------------HHHHHHHHHHHCCCC
Q 036275          178 ----DVVTWTSRLAAYSRKKLYR------------------------------------------RCLEIFEEMIDAGCY  211 (271)
Q Consensus       178 ----~~~~~~~li~~~~~~g~~~------------------------------------------~a~~~~~~m~~~~~~  211 (271)
                          +..-|...+..|.+..|.+                                          .....++.|+-.-+-
T Consensus       351 ~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~  430 (625)
T KOG4422|consen  351 ITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYF  430 (625)
T ss_pred             CCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceec
Confidence                1223344444444444444                                          444444444444445


Q ss_pred             CCHHHHHHHHHHHhccCcHHHHHHHHHHHHhcc
Q 036275          212 PDGGTAKVLISACSSEDQIEQVTTLVRTMHKDM  244 (271)
Q Consensus       212 p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~  244 (271)
                      |+..+...++++....|.++-.-+++.++..-|
T Consensus       431 p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~g  463 (625)
T KOG4422|consen  431 PHSQTMIHLLRALDVANRLEVIPRIWKDSKEYG  463 (625)
T ss_pred             CCchhHHHHHHHHhhcCcchhHHHHHHHHHHhh
Confidence            777777778888777788877777777776655

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=99.51  E-value=2.5e-11  Score=111.52  Aligned_cols=217  Identities=11%  Similarity=0.007  Sum_probs=136.9

Q ss_pred             chHHHHHH-hcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc
Q 036275           44 PNLFVFIF-SIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRL  122 (271)
Q Consensus        44 y~~ll~~~-~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~  122 (271)
                      |..+-.++ .+++++|+..|.+.....  |+......+...+...|++++|...|+++...  +|+...+..+..++.+.
T Consensus       480 ~~~LG~~l~~~~~~eAi~a~~~Al~~~--Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~  555 (987)
T PRK09782        480 WNRLAKCYRDTLPGVALYAWLQAEQRQ--PDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAA  555 (987)
T ss_pred             HHHHHHHHHhCCcHHHHHHHHHHHHhC--CchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHC
Confidence            44455555 667777777776666543  44443333444445677777777777776544  34444455566667777


Q ss_pred             CCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 036275          123 GQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIF  202 (271)
Q Consensus       123 g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~  202 (271)
                      |+.++|...++...+.. +.+...+..+.....+.|++++|...+++..+.  .|+...|..+...+.+.|++++|...+
T Consensus       556 Gd~~eA~~~l~qAL~l~-P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~lG~~deA~~~l  632 (987)
T PRK09782        556 GNGAARDRWLQQAEQRG-LGDNALYWWLHAQRYIPGQPELALNDLTRSLNI--APSANAYVARATIYRQRHNVPAAVSDL  632 (987)
T ss_pred             CCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence            77777777777776653 233333333344444557777777777777665  456667777777777777777777777


Q ss_pred             HHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhcccchhHH---HHHHHhhccccccchhhh
Q 036275          203 EEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKDMKTALPI---YFNLYGEKGVARSNLGQY  268 (271)
Q Consensus       203 ~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~---~~~~~~~~G~~~~a~~~~  268 (271)
                      ++..+.. +-+...+..+..++...|+.++|...+++..+..+.....   +-.+|...|+.++|+..|
T Consensus       633 ~~AL~l~-Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l  700 (987)
T PRK09782        633 RAALELE-PNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYA  700 (987)
T ss_pred             HHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence            7777653 3345556666666777777777777777776655544333   344577777777776654

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=99.50  E-value=2e-13  Score=109.80  Aligned_cols=212  Identities=12%  Similarity=0.066  Sum_probs=92.6

Q ss_pred             hcCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHhHHHH
Q 036275           52 SIYFSDAHAVFEEMKRLG-ITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEE  130 (271)
Q Consensus        52 ~g~~~~A~~~~~~~~~~~-~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~  130 (271)
                      .|++++|+++++...... .+.+...|..+.......++++.|...++++...+.. ++..+..++.. ...+++++|.+
T Consensus        21 ~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~~~~~~A~~   98 (280)
T PF13429_consen   21 RGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQDGDPEEALK   98 (280)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccccccccccc
Confidence            999999999997655443 2446666667777788899999999999999987644 66677778877 79999999999


Q ss_pred             HHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHhchhCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 036275          131 VLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR-LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAG  209 (271)
Q Consensus       131 ~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g-~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~  209 (271)
                      +++...+.  .++...+..++..+.+.++++++.++++.+.... .+.+...|..+...+.+.|+.++|.+.+++.++..
T Consensus        99 ~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~  176 (280)
T PF13429_consen   99 LAEKAYER--DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALELD  176 (280)
T ss_dssp             ---------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-
T ss_pred             cccccccc--ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence            99887665  3567778889999999999999999999977532 34577788889999999999999999999999863


Q ss_pred             CCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhc---ccchhHHHHHHHhhccccccchhhh
Q 036275          210 CYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKD---MKTALPIYFNLYGEKGVARSNLGQY  268 (271)
Q Consensus       210 ~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~~~~~~~~~G~~~~a~~~~  268 (271)
                       +-|......++..+...|+.+++.++++...+.   ++..+..+..+|...|+.++|+..|
T Consensus       177 -P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~  237 (280)
T PF13429_consen  177 -PDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYL  237 (280)
T ss_dssp             -TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHH
T ss_pred             -CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccccccccccccc
Confidence             335777888999999999999988888887665   3555677888999999999999876

>PF13041 PPR_2: PPR repeat family

Probab=99.49  E-value=1.1e-13  Score=80.57  Aligned_cols=47  Identities=26%  Similarity=0.515  Sum_probs=18.2

Q ss_pred             CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 036275           73 TMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLY  119 (271)
Q Consensus        73 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~  119 (271)
                      |..+||.+|.+|++.|++++|.++|++|.+.|+.||..||+.+|++|
T Consensus         2 ~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~   48 (50)
T PF13041_consen    2 DVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGL   48 (50)
T ss_pred             chHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence            33333333333333333333333333333333333333333333333

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=99.49  E-value=1.8e-11  Score=95.40  Aligned_cols=228  Identities=13%  Similarity=0.100  Sum_probs=180.0

Q ss_pred             HHhhcCchHHHHHH-hcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH---HHHH
Q 036275           38 LLLQHTPNLFVFIF-SIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDT---FVIN  113 (271)
Q Consensus        38 ~~~~~~y~~ll~~~-~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~---~~~~  113 (271)
                      ++++.+|-.=+..+ +++.++|.+.|-+|.+.+ +-+..+--+|.+.|-+.|..|.|+.+.+.+.++.--+..   ...-
T Consensus        33 ~~lsr~Yv~GlNfLLs~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~  111 (389)
T COG2956          33 NRLSRDYVKGLNFLLSNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQ  111 (389)
T ss_pred             hhccHHHHhHHHHHhhcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHH
Confidence            34555577777777 999999999999998864 556677778999999999999999999999886322221   2345


Q ss_pred             HHHHHHHccCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHhchhCCCCCCH----HHHHHHHHHH
Q 036275          114 SMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDV----VTWTSRLAAY  189 (271)
Q Consensus       114 ~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~----~~~~~li~~~  189 (271)
                      .|.+-|...|-+|.|+++|..+.+.+ ..-......|+..|-...+|++|+++-+++.+.+-.+..    ..|.-+...+
T Consensus       112 qL~~Dym~aGl~DRAE~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~  190 (389)
T COG2956         112 QLGRDYMAAGLLDRAEDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQA  190 (389)
T ss_pred             HHHHHHHHhhhhhHHHHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHH
Confidence            57778889999999999999998865 345677889999999999999999999998887655443    3466777777


Q ss_pred             HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhcccch----hHHHHHHHhhccccccch
Q 036275          190 SRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKDMKTA----LPIYFNLYGEKGVARSNL  265 (271)
Q Consensus       190 ~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~----~~~~~~~~~~~G~~~~a~  265 (271)
                      ....+.+.|..++.+..+.+ +-....-..+.+.....|++++|.+.++.+.+.++.-    .+.+..+|...|+.++.+
T Consensus       191 ~~~~~~d~A~~~l~kAlqa~-~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~  269 (389)
T COG2956         191 LASSDVDRARELLKKALQAD-KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGL  269 (389)
T ss_pred             hhhhhHHHHHHHHHHHHhhC-ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHH
Confidence            78899999999999988764 2334444556677889999999999999999887654    455777899999988776


Q ss_pred             hhh
Q 036275          266 GQY  268 (271)
Q Consensus       266 ~~~  268 (271)
                      ...
T Consensus       270 ~fL  272 (389)
T COG2956         270 NFL  272 (389)
T ss_pred             HHH
Confidence            543

>PF13041 PPR_2: PPR repeat family

Probab=99.49  E-value=1.3e-13  Score=80.22  Aligned_cols=50  Identities=34%  Similarity=0.549  Sum_probs=48.5

Q ss_pred             CCHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHc
Q 036275          107 PDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGR  156 (271)
Q Consensus       107 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~  156 (271)
                      ||..+||++|++|++.|++++|.++|++|.+.|+.||..||+.+|++|++
T Consensus         1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k   50 (50)
T PF13041_consen    1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK   50 (50)
T ss_pred             CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence            79999999999999999999999999999999999999999999999985

>KOG4422 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.47  E-value=8.9e-12  Score=100.63  Aligned_cols=194  Identities=15%  Similarity=0.214  Sum_probs=154.1

Q ss_pred             chHHHHHH-hcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh--cCChHHH-HHHHHHHHHC----------------
Q 036275           44 PNLFVFIF-SIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSK--TGNVAKC-EGVINQMHKS----------------  103 (271)
Q Consensus        44 y~~ll~~~-~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~--~~~~~~a-~~~~~~m~~~----------------  103 (271)
                      =|.|+... +|.+.++.-+|+.|++.|++.+...--.|+...+-  ..++.-+ .+.|-.|...                
T Consensus       119 E~nL~kmIS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G~vAdL  198 (625)
T KOG4422|consen  119 ENNLLKMISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSGAVADL  198 (625)
T ss_pred             hhHHHHHHhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccccccccccccHHHH
Confidence            67788888 99999999999999999988888777666655432  2222211 1112222211                


Q ss_pred             ---CCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHhchhCCCCCCHH
Q 036275          104 ---GLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVV  180 (271)
Q Consensus       104 ---~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~  180 (271)
                         -.+-+..|+.++|.+.|+--..+.|.+++++-.......+..+||.+|.+-+-...    .+++.+|....++||..
T Consensus       199 ~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~----K~Lv~EMisqkm~Pnl~  274 (625)
T KOG4422|consen  199 LFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVG----KKLVAEMISQKMTPNLF  274 (625)
T ss_pred             HHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhcc----HHHHHHHHHhhcCCchH
Confidence               13557789999999999999999999999999988778999999999987654433    78899999999999999


Q ss_pred             HHHHHHHHHHhcCCHHH----HHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHH-HHHHHHHHH
Q 036275          181 TWTSRLAAYSRKKLYRR----CLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQ-VTTLVRTMH  241 (271)
Q Consensus       181 ~~~~li~~~~~~g~~~~----a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~-a~~~~~~~~  241 (271)
                      |+|+++.+..+.|+++.    |.+++.+|.+-|+.|...+|..+|..+.+.++..+ +..++.++.
T Consensus       275 TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~  340 (625)
T KOG4422|consen  275 TFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQ  340 (625)
T ss_pred             hHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHH
Confidence            99999999999998874    57788999999999999999999999988888754 445555554

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.46  E-value=1.1e-11  Score=104.35  Aligned_cols=210  Identities=13%  Similarity=0.146  Sum_probs=152.8

Q ss_pred             hcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHccCCHhHHHH
Q 036275           52 SIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPD-TFVINSMLNLYGRLGQFEKMEE  130 (271)
Q Consensus        52 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~  130 (271)
                      .+.+++|+..|.+..... +.....+..+...|...|..+.|+..|++.++.  +|+ ...|+.|..++-..|+.++|.+
T Consensus       265 ~~~~d~Avs~Y~rAl~lr-pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~--~P~F~~Ay~NlanALkd~G~V~ea~~  341 (966)
T KOG4626|consen  265 ARIFDRAVSCYLRALNLR-PNHAVAHGNLACIYYEQGLLDLAIDTYKRALEL--QPNFPDAYNNLANALKDKGSVTEAVD  341 (966)
T ss_pred             HhcchHHHHHHHHHHhcC-CcchhhccceEEEEeccccHHHHHHHHHHHHhc--CCCchHHHhHHHHHHHhccchHHHHH
Confidence            556666666665554442 334555666666666777777777777777665  333 4568888888888888888888


Q ss_pred             HHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHhchhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 036275          131 VLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPD-VVTWTSRLAAYSRKKLYRRCLEIFEEMIDAG  209 (271)
Q Consensus       131 ~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~  209 (271)
                      .+....... +....+.+.|..+|...|.+++|..+|....+-  .|. ...++.|...|-++|++++|...+++...- 
T Consensus       342 cYnkaL~l~-p~hadam~NLgni~~E~~~~e~A~~ly~~al~v--~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI-  417 (966)
T KOG4626|consen  342 CYNKALRLC-PNHADAMNNLGNIYREQGKIEEATRLYLKALEV--FPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRI-  417 (966)
T ss_pred             HHHHHHHhC-CccHHHHHHHHHHHHHhccchHHHHHHHHHHhh--ChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhc-
Confidence            888777652 334677788888888888888888888877654  344 356788888888888888888888887763 


Q ss_pred             CCCC-HHHHHHHHHHHhccCcHHHHHHHHHHHHhcccchh---HHHHHHHhhccccccchhhhh
Q 036275          210 CYPD-GGTAKVLISACSSEDQIEQVTTLVRTMHKDMKTAL---PIYFNLYGEKGVARSNLGQYI  269 (271)
Q Consensus       210 ~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~~~~~G~~~~a~~~~~  269 (271)
                       .|+ ...|+.+-..|...|+.+.|.+.+.+....++..-   ..+..+|..+|...+|++.|-
T Consensus       418 -~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~  480 (966)
T KOG4626|consen  418 -KPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYR  480 (966)
T ss_pred             -CchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHH
Confidence             565 46788888888888888888888888877776543   446667999999999988763

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=99.44  E-value=1.8e-10  Score=89.50  Aligned_cols=194  Identities=10%  Similarity=0.082  Sum_probs=157.9

Q ss_pred             CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChhhHHHH
Q 036275           71 TPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNIL  150 (271)
Q Consensus        71 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l  150 (271)
                      ......+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|.+.+++..+.. +.+...+..+
T Consensus        28 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~  105 (234)
T TIGR02521        28 NKAAKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNY  105 (234)
T ss_pred             CcHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHH
Confidence            3456778889999999999999999999998764 3356778889999999999999999999998864 4566788889


Q ss_pred             HHHHHcCCCHHHHHHHHHhchhCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCc
Q 036275          151 INIYGRGGFIEKMEGLFQSLPAKRLK-PDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQ  229 (271)
Q Consensus       151 i~~~~~~g~~~~a~~~~~~m~~~g~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~  229 (271)
                      ...+...|++++|.+.+++....... .....+..+...+...|++++|...+.+..+.. +.+...+..+...+...|+
T Consensus       106 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~  184 (234)
T TIGR02521       106 GTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRGQ  184 (234)
T ss_pred             HHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcCC
Confidence            99999999999999999998764322 234567778889999999999999999988763 3356778888899999999


Q ss_pred             HHHHHHHHHHHHhcccch---hHHHHHHHhhccccccchhh
Q 036275          230 IEQVTTLVRTMHKDMKTA---LPIYFNLYGEKGVARSNLGQ  267 (271)
Q Consensus       230 ~~~a~~~~~~~~~~~~~~---~~~~~~~~~~~G~~~~a~~~  267 (271)
                      +++|..++++..+..+..   ......++...|+.++|...
T Consensus       185 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~  225 (234)
T TIGR02521       185 YKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRY  225 (234)
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHH
Confidence            999999999987653322   23345667888888887654

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=99.43  E-value=9.3e-11  Score=98.85  Aligned_cols=210  Identities=8%  Similarity=-0.023  Sum_probs=139.2

Q ss_pred             hcCHHHHHHHHHHHHHcCCCCCHHHHH--HHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHhHHH
Q 036275           52 SIYFSDAHAVFEEMKRLGITPTMKSHM--LLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKME  129 (271)
Q Consensus        52 ~g~~~~A~~~~~~~~~~~~~~~~~~~~--~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~  129 (271)
                      .|+++.|.+.|.++.+.  .|+.....  .....+...|+++.|...++++.+... -+......+...|.+.|++++|.
T Consensus       131 ~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P-~~~~al~ll~~~~~~~gdw~~a~  207 (398)
T PRK10747        131 RGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVAP-RHPEVLRLAEQAYIRTGAWSSLL  207 (398)
T ss_pred             CCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHHhHHHHH
Confidence            56666666666665543  23332222  223455555666666666666655542 24445555556666666666666


Q ss_pred             HHHHHHHhCCC-----------------------------------------CCChhhHHHHHHHHHcCCCHHHHHHHHH
Q 036275          130 EVLTAMEKGSY-----------------------------------------AADISTYNILINIYGRGGFIEKMEGLFQ  168 (271)
Q Consensus       130 ~~~~~m~~~~~-----------------------------------------~~~~~~~~~li~~~~~~g~~~~a~~~~~  168 (271)
                      +++..+.+.+.                                         +.++.....+...+...|+.++|.++++
T Consensus       208 ~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~  287 (398)
T PRK10747        208 DILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIIL  287 (398)
T ss_pred             HHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence            55555544321                                         2345556677888889999999999998


Q ss_pred             hchhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhcccchh
Q 036275          169 SLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKDMKTAL  248 (271)
Q Consensus       169 ~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~  248 (271)
                      +..+.  .|+...  .++.+....++.+++.+..+...+.. +-|...+..+.+.|...+++++|.+.|+...+..+...
T Consensus       288 ~~l~~--~~~~~l--~~l~~~l~~~~~~~al~~~e~~lk~~-P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~  362 (398)
T PRK10747        288 DGLKR--QYDERL--VLLIPRLKTNNPEQLEKVLRQQIKQH-GDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAY  362 (398)
T ss_pred             HHHhc--CCCHHH--HHHHhhccCCChHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHH
Confidence            88774  455422  23344456689999999999888763 34556677889999999999999999999988766654


Q ss_pred             H--HHHHHHhhccccccchhhhh
Q 036275          249 P--IYFNLYGEKGVARSNLGQYI  269 (271)
Q Consensus       249 ~--~~~~~~~~~G~~~~a~~~~~  269 (271)
                      .  .+..++.+.|+.++|.+.|-
T Consensus       363 ~~~~La~~~~~~g~~~~A~~~~~  385 (398)
T PRK10747        363 DYAWLADALDRLHKPEEAAAMRR  385 (398)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHH
Confidence            4  57788999999999988763

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.43  E-value=1.5e-11  Score=103.50  Aligned_cols=217  Identities=12%  Similarity=0.119  Sum_probs=184.8

Q ss_pred             chHHHHHH--hcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 036275           44 PNLFVFIF--SIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGR  121 (271)
Q Consensus        44 y~~ll~~~--~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~  121 (271)
                      |+.|--.+  .|+..+|+.-|++..+.+ |.=...|-.|...|...+.+++|+..|.+..... +-....+..+...|..
T Consensus       221 wsnLg~~f~~~Gei~~aiq~y~eAvkld-P~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lr-pn~A~a~gNla~iYye  298 (966)
T KOG4626|consen  221 WSNLGCVFNAQGEIWLAIQHYEEAVKLD-PNFLDAYINLGNVYKEARIFDRAVSCYLRALNLR-PNHAVAHGNLACIYYE  298 (966)
T ss_pred             ehhcchHHhhcchHHHHHHHHHHhhcCC-CcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcC-CcchhhccceEEEEec
Confidence            77777777  999999999999998875 4457889999999999999999999998887763 2345678889999999


Q ss_pred             cCCHhHHHHHHHHHHhCCCCCC-hhhHHHHHHHHHcCCCHHHHHHHHHhchhCCCCCC-HHHHHHHHHHHHhcCCHHHHH
Q 036275          122 LGQFEKMEEVLTAMEKGSYAAD-ISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPD-VVTWTSRLAAYSRKKLYRRCL  199 (271)
Q Consensus       122 ~g~~~~a~~~~~~m~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~-~~~~~~li~~~~~~g~~~~a~  199 (271)
                      .|.+|.|++.+++..+.  .|+ ...|+.|..++-..|+..+|++.+......  .|+ ....+.|...|.+.|.+++|.
T Consensus       299 qG~ldlAI~~Ykral~~--~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l--~p~hadam~NLgni~~E~~~~e~A~  374 (966)
T KOG4626|consen  299 QGLLDLAIDTYKRALEL--QPNFPDAYNNLANALKDKGSVTEAVDCYNKALRL--CPNHADAMNNLGNIYREQGKIEEAT  374 (966)
T ss_pred             cccHHHHHHHHHHHHhc--CCCchHHHhHHHHHHHhccchHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHhccchHHH
Confidence            99999999999999886  454 789999999999999999999999998876  343 578999999999999999999


Q ss_pred             HHHHHHHHCCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHHHhcccchhHHHHH---HHhhccccccchhhh
Q 036275          200 EIFEEMIDAGCYPD-GGTAKVLISACSSEDQIEQVTTLVRTMHKDMKTALPIYFN---LYGEKGVARSNLGQY  268 (271)
Q Consensus       200 ~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~---~~~~~G~~~~a~~~~  268 (271)
                      ++|....+-  .|. ...++.|...|.++|++++|...+++..+-.+..-.++.+   .|...|+...|++-|
T Consensus       375 ~ly~~al~v--~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~A~q~y  445 (966)
T KOG4626|consen  375 RLYLKALEV--FPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSAAIQCY  445 (966)
T ss_pred             HHHHHHHhh--ChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHHHHHHH
Confidence            999998774  344 5678899999999999999999999998877766555554   488899998888765

>PRK12370 invasion protein regulator; Provisional

Probab=99.42  E-value=1.6e-10  Score=101.45  Aligned_cols=203  Identities=8%  Similarity=-0.005  Sum_probs=149.6

Q ss_pred             hcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh---------cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc
Q 036275           52 SIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSK---------TGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRL  122 (271)
Q Consensus        52 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~---------~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~  122 (271)
                      .+.+++|.+.|++..+.. |-+...|..+..++..         .+++++|...+++..+... -+...+..+...+...
T Consensus       274 ~~~~~~A~~~~~~Al~ld-P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP-~~~~a~~~lg~~~~~~  351 (553)
T PRK12370        274 PYSLQQALKLLTQCVNMS-PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDH-NNPQALGLLGLINTIH  351 (553)
T ss_pred             HHHHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHc
Confidence            455788999999988775 4456667666655542         2447899999999888753 3667788888888899


Q ss_pred             CCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHhchhCCCCCCH-HHHHHHHHHHHhcCCHHHHHHH
Q 036275          123 GQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDV-VTWTSRLAAYSRKKLYRRCLEI  201 (271)
Q Consensus       123 g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~-~~~~~li~~~~~~g~~~~a~~~  201 (271)
                      |++++|...+++..+.+ +.+...+..+..++...|++++|...+++..+..  |+. ..+..++..+...|++++|...
T Consensus       352 g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~--P~~~~~~~~~~~~~~~~g~~eeA~~~  428 (553)
T PRK12370        352 SEYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLKLD--PTRAAAGITKLWITYYHTGIDDAIRL  428 (553)
T ss_pred             cCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCChhhHHHHHHHHHhccCHHHHHHH
Confidence            99999999999998874 4557788888999999999999999999988763  442 2334445556678899999999


Q ss_pred             HHHHHHCCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHHHhcccchhHH---HHHHHhhccc
Q 036275          202 FEEMIDAGCYPD-GGTAKVLISACSSEDQIEQVTTLVRTMHKDMKTALPI---YFNLYGEKGV  260 (271)
Q Consensus       202 ~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~---~~~~~~~~G~  260 (271)
                      +++..+.. .|+ ...+..+..++...|+.++|...+.++....+.....   +...|...|+
T Consensus       429 ~~~~l~~~-~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~  490 (553)
T PRK12370        429 GDELRSQH-LQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNSE  490 (553)
T ss_pred             HHHHHHhc-cccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccHH
Confidence            98887653 343 4446667777888999999999999887665544333   3444566663

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=99.42  E-value=1.4e-10  Score=110.02  Aligned_cols=219  Identities=7%  Similarity=0.018  Sum_probs=159.1

Q ss_pred             HHHHH--hcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCC
Q 036275           47 FVFIF--SIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQ  124 (271)
Q Consensus        47 ll~~~--~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~  124 (271)
                      +...+  .|++++|++.|++..+.. |-+...+..+...|.+.|++++|...++++.+.... +...+..+...+...++
T Consensus       467 ~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~-~~~~~~a~al~l~~~~~  544 (1157)
T PRK11447        467 QAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPN-DPEQVYAYGLYLSGSDR  544 (1157)
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHhCCC
Confidence            44445  899999999999998875 557778888999999999999999999998875322 33333333333334444


Q ss_pred             HhHHHHHHHHHHhC---------------------------------------CCCCChhhHHHHHHHHHcCCCHHHHHH
Q 036275          125 FEKMEEVLTAMEKG---------------------------------------SYAADISTYNILINIYGRGGFIEKMEG  165 (271)
Q Consensus       125 ~~~a~~~~~~m~~~---------------------------------------~~~~~~~~~~~li~~~~~~g~~~~a~~  165 (271)
                      .++|...++.+...                                       ..+.+...+..+...+.+.|++++|++
T Consensus       545 ~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~~p~~~~~~~~La~~~~~~g~~~~A~~  624 (1157)
T PRK11447        545 DRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQQPPSTRIDLTLADWAQQRGDYAAARA  624 (1157)
T ss_pred             HHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHH
Confidence            44444443332110                                       124556677788899999999999999


Q ss_pred             HHHhchhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhccc
Q 036275          166 LFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKDMK  245 (271)
Q Consensus       166 ~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~  245 (271)
                      .|++..+.. +.+...+..+...+...|++++|.+.++...+.. +.+..+...+..++...|++++|.++++++.+..+
T Consensus       625 ~y~~al~~~-P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~-p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~  702 (1157)
T PRK11447        625 AYQRVLTRE-PGNADARLGLIEVDIAQGDLAAARAQLAKLPATA-NDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAK  702 (1157)
T ss_pred             HHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccC-CCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCc
Confidence            999988763 3357889999999999999999999999877652 23455667777888899999999999999876543


Q ss_pred             ch---------hHHHHHHHhhccccccchhhhh
Q 036275          246 TA---------LPIYFNLYGEKGVARSNLGQYI  269 (271)
Q Consensus       246 ~~---------~~~~~~~~~~~G~~~~a~~~~~  269 (271)
                      ..         ......++...|+.++|++.|-
T Consensus       703 ~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~  735 (1157)
T PRK11447        703 SQPPSMESALVLRDAARFEAQTGQPQQALETYK  735 (1157)
T ss_pred             cCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            21         1223567889999999988763

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=99.41  E-value=2.8e-11  Score=102.47  Aligned_cols=234  Identities=13%  Similarity=0.047  Sum_probs=174.5

Q ss_pred             hHHHHHHHhhcC-chH------HHHHH--hcCHHHHHHHHHHHHHcC---------------------------------
Q 036275           32 FMLINFLLLQHT-PNL------FVFIF--SIYFSDAHAVFEEMKRLG---------------------------------   69 (271)
Q Consensus        32 ~~~~~f~~~~~~-y~~------ll~~~--~g~~~~A~~~~~~~~~~~---------------------------------   69 (271)
                      .|...|..+|+. ||+      +-.+|  .+++++|.++|+.+++..                                 
T Consensus       337 ~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~Li~~  416 (638)
T KOG1126|consen  337 EALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQDLIDT  416 (638)
T ss_pred             HHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHHHHhh
Confidence            455566666554 332      33444  778888888888776542                                 


Q ss_pred             CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChhhHH
Q 036275           70 ITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKP-DTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYN  148 (271)
Q Consensus        70 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~  148 (271)
                      -+..+.+|.++.++|+-+++.+.|++.|++..+.  .| ...+|+.+..-+....++|.|...|....... +.+-..|-
T Consensus       417 ~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQl--dp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~-~rhYnAwY  493 (638)
T KOG1126|consen  417 DPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQL--DPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVD-PRHYNAWY  493 (638)
T ss_pred             CCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhcc--CCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCC-chhhHHHH
Confidence            1345677888888888888899999999888876  34 66788888888888888899988888876642 23345666


Q ss_pred             HHHHHHHcCCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC
Q 036275          149 ILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSED  228 (271)
Q Consensus       149 ~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g  228 (271)
                      .|.-.|.+.++++.|+-.|+...+.+ +-+.+....+...+-+.|+.++|++++++..... +-|...--.-...+...+
T Consensus       494 GlG~vy~Kqek~e~Ae~~fqkA~~IN-P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld-~kn~l~~~~~~~il~~~~  571 (638)
T KOG1126|consen  494 GLGTVYLKQEKLEFAEFHFQKAVEIN-PSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLD-PKNPLCKYHRASILFSLG  571 (638)
T ss_pred             hhhhheeccchhhHHHHHHHhhhcCC-ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcC-CCCchhHHHHHHHHHhhc
Confidence            77888999999999999999888764 2256677778888889999999999999987754 334544445566677789


Q ss_pred             cHHHHHHHHHHHHhcccchh---HHHHHHHhhccccccchhhhhc
Q 036275          229 QIEQVTTLVRTMHKDMKTAL---PIYFNLYGEKGVARSNLGQYIG  270 (271)
Q Consensus       229 ~~~~a~~~~~~~~~~~~~~~---~~~~~~~~~~G~~~~a~~~~~~  270 (271)
                      +.++|.+.++++.+--+...   ..+-..|.+.|+.+.|+..|.|
T Consensus       572 ~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~  616 (638)
T KOG1126|consen  572 RYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSW  616 (638)
T ss_pred             chHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHH
Confidence            99999999999987665544   4455679999999999887754

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=99.40  E-value=5.1e-10  Score=103.07  Aligned_cols=203  Identities=12%  Similarity=-0.002  Sum_probs=162.9

Q ss_pred             HHHhhcCchHHHHHH----hcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHH
Q 036275           37 FLLLQHTPNLFVFIF----SIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVI  112 (271)
Q Consensus        37 f~~~~~~y~~ll~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~  112 (271)
                      ....|..++.+..++    .|++++|...|+++...  +|+...+..+...+.+.|+.++|...+++..+.. +.+...+
T Consensus       503 l~~~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~-P~~~~l~  579 (987)
T PRK09782        503 EQRQPDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG-LGDNALY  579 (987)
T ss_pred             HHhCCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CccHHHH
Confidence            334454455543333    99999999999998654  5555667778888999999999999999998875 2233334


Q ss_pred             HHHHHHHHccCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhc
Q 036275          113 NSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRK  192 (271)
Q Consensus       113 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~  192 (271)
                      ..+.......|++++|...+++..+.  .|+...+..+..++.+.|+.++|+..+++..... +-+...+..+..++...
T Consensus       580 ~~La~~l~~~Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~-Pd~~~a~~nLG~aL~~~  656 (987)
T PRK09782        580 WWLHAQRYIPGQPELALNDLTRSLNI--APSANAYVARATIYRQRHNVPAAVSDLRAALELE-PNNSNYQAALGYALWDS  656 (987)
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHC
Confidence            44444555679999999999999886  4678899999999999999999999999998873 22466788888899999


Q ss_pred             CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhcccc
Q 036275          193 KLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKDMKT  246 (271)
Q Consensus       193 g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~  246 (271)
                      |++++|...+++..+.. +-+...+..+..++...|++++|...+++..+..+.
T Consensus       657 G~~eeAi~~l~~AL~l~-P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~  709 (987)
T PRK09782        657 GDIAQSREMLERAHKGL-PDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDN  709 (987)
T ss_pred             CCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence            99999999999998863 446678889999999999999999999999776543

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=99.40  E-value=6.6e-10  Score=105.57  Aligned_cols=221  Identities=8%  Similarity=0.041  Sum_probs=132.0

Q ss_pred             chHHHHHH--hcCHHHHHHHHHHHHHcCCCCCHHHHHHHHH---------------------------------------
Q 036275           44 PNLFVFIF--SIYFSDAHAVFEEMKRLGITPTMKSHMLLLT---------------------------------------   82 (271)
Q Consensus        44 y~~ll~~~--~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~---------------------------------------   82 (271)
                      +..+-..+  .|++++|++.|++..+.. +.+...+..+..                                       
T Consensus       388 ~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~  466 (1157)
T PRK11447        388 VLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNAVRGLANLYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQ  466 (1157)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHH
Confidence            33444455  778888888888777654 333433333322                                       


Q ss_pred             ---HHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCC
Q 036275           83 ---AYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGF  159 (271)
Q Consensus        83 ---~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~  159 (271)
                         .+...|++++|++.|++..+.... +...+..+...|.+.|++++|...++++.+.. +.+...+..+...+...|+
T Consensus       467 ~a~~~~~~g~~~eA~~~~~~Al~~~P~-~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~-P~~~~~~~a~al~l~~~~~  544 (1157)
T PRK11447        467 QAEALENQGKWAQAAELQRQRLALDPG-SVWLTYRLAQDLRQAGQRSQADALMRRLAQQK-PNDPEQVYAYGLYLSGSDR  544 (1157)
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHhCCC
Confidence               233456777777777776665322 44556667777777777777777777766542 2233333333333444444


Q ss_pred             HHHHHHHHHhchhCC---------------------------------------CCCCHHHHHHHHHHHHhcCCHHHHHH
Q 036275          160 IEKMEGLFQSLPAKR---------------------------------------LKPDVVTWTSRLAAYSRKKLYRRCLE  200 (271)
Q Consensus       160 ~~~a~~~~~~m~~~g---------------------------------------~~~~~~~~~~li~~~~~~g~~~~a~~  200 (271)
                      .++|...++.+....                                       .+.+...+..+...+.+.|++++|..
T Consensus       545 ~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~~p~~~~~~~~La~~~~~~g~~~~A~~  624 (1157)
T PRK11447        545 DRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQQPPSTRIDLTLADWAQQRGDYAAARA  624 (1157)
T ss_pred             HHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHH
Confidence            444444444332110                                       12233445556666777788888888


Q ss_pred             HHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhcccchh---HHHHHHHhhccccccchhhh
Q 036275          201 IFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKDMKTAL---PIYFNLYGEKGVARSNLGQY  268 (271)
Q Consensus       201 ~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~~~~~G~~~~a~~~~  268 (271)
                      .|++..+.. +.+...+..+...+...|+.++|.+.++.+.+..+...   ..+..++...|+.++|++.|
T Consensus       625 ~y~~al~~~-P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~  694 (1157)
T PRK11447        625 AYQRVLTRE-PGNADARLGLIEVDIAQGDLAAARAQLAKLPATANDSLNTQRRVALAWAALGDTAAAQRTF  694 (1157)
T ss_pred             HHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHhCCCHHHHHHHH
Confidence            888777653 34566777777788888888888888887766543332   23445677788887777655

>PRK12370 invasion protein regulator; Provisional

Probab=99.35  E-value=7.6e-10  Score=97.27  Aligned_cols=204  Identities=11%  Similarity=-0.043  Sum_probs=151.4

Q ss_pred             cCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHhHHHHHH
Q 036275           53 IYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVL  132 (271)
Q Consensus        53 g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~  132 (271)
                      +++++|...+++..+.+ |-+...+..+...+...|++++|...|++..+.+ +.+...+..+...+...|++++|...+
T Consensus       318 ~~~~~A~~~~~~Al~ld-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~  395 (553)
T PRK12370        318 NAMIKAKEHAIKATELD-HNNPQALGLLGLINTIHSEYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTI  395 (553)
T ss_pred             hHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence            44899999999999886 6688899999999999999999999999999885 335667888899999999999999999


Q ss_pred             HHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHhchhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 036275          133 TAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP-DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCY  211 (271)
Q Consensus       133 ~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~  211 (271)
                      ++..+.. +.+...+..++..+...|++++|.+.++++.... .| ++..+..+..++...|+.++|...+.++...  .
T Consensus       396 ~~Al~l~-P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~-~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~--~  471 (553)
T PRK12370        396 NECLKLD-PTRAAAGITKLWITYYHTGIDDAIRLGDELRSQH-LQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ--E  471 (553)
T ss_pred             HHHHhcC-CCChhhHHHHHHHHHhccCHHHHHHHHHHHHHhc-cccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc--c
Confidence            9998873 2233344445556777899999999999987653 24 4556777888889999999999999987655  4


Q ss_pred             CCHHH-HHHHHHHHhccCcHHHHHHHHHHHHhcc---cchhHHHHHHHhhccccccc
Q 036275          212 PDGGT-AKVLISACSSEDQIEQVTTLVRTMHKDM---KTALPIYFNLYGEKGVARSN  264 (271)
Q Consensus       212 p~~~~-~~~l~~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~~~~~~~~~G~~~~a  264 (271)
                      |+..+ ...+...+...|  +++...++.+.+..   ..........|.-.|+.+.+
T Consensus       472 ~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~~~~~~~~~~~~~~~g~~~~~  526 (553)
T PRK12370        472 ITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQRIDNNPGLLPLVLVAHGEAIAE  526 (553)
T ss_pred             chhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHhhcCchHHHHHHHHHhhhHHH
Confidence            44443 444555567767  47777777775432   22223344445555544433

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=99.31  E-value=3e-09  Score=96.98  Aligned_cols=220  Identities=12%  Similarity=0.114  Sum_probs=155.5

Q ss_pred             chHHHHHH--hcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 036275           44 PNLFVFIF--SIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGR  121 (271)
Q Consensus        44 y~~ll~~~--~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~  121 (271)
                      +..+..++  .|++++|.++|++..+.. |.+...+..+...+...|+.++|+..+++..+.. +.+.. +..+..++..
T Consensus        52 ~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~  128 (765)
T PRK10049         52 YAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGLILTLADAGQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKR  128 (765)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHH
Confidence            55555566  999999999999988775 5677788888899999999999999999998873 33455 8888888999


Q ss_pred             cCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHhchh-----------------------------
Q 036275          122 LGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPA-----------------------------  172 (271)
Q Consensus       122 ~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-----------------------------  172 (271)
                      .|+.++|+..++++.+.. +.+...+..+..++...|..++|++.++....                             
T Consensus       129 ~g~~~~Al~~l~~al~~~-P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~~~~~~  207 (765)
T PRK10049        129 AGRHWDELRAMTQALPRA-PQTQQYPTEYVQALRNNRLSAPALGAIDDANLTPAEKRDLEADAAAELVRLSFMPTRSEKE  207 (765)
T ss_pred             CCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCChHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcccccChhH
Confidence            999999999999998863 44566667777777777777766655553221                             


Q ss_pred             -----------------C-CCCCCHH-HHH----HHHHHHHhcCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHhccC
Q 036275          173 -----------------K-RLKPDVV-TWT----SRLAAYSRKKLYRRCLEIFEEMIDAGCY-PDGGTAKVLISACSSED  228 (271)
Q Consensus       173 -----------------~-g~~~~~~-~~~----~li~~~~~~g~~~~a~~~~~~m~~~~~~-p~~~~~~~l~~~~~~~g  228 (271)
                                       . ...|+.. .+.    ..+.++...|++++|...|+.+.+.+-. |+. ....+..++...|
T Consensus       208 r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g  286 (765)
T PRK10049        208 RYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLH  286 (765)
T ss_pred             HHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcC
Confidence                             1 0111111 111    1133456778889999999998876522 332 2223466788889


Q ss_pred             cHHHHHHHHHHHHhcccch-------hHHHHHHHhhccccccchhhh
Q 036275          229 QIEQVTTLVRTMHKDMKTA-------LPIYFNLYGEKGVARSNLGQY  268 (271)
Q Consensus       229 ~~~~a~~~~~~~~~~~~~~-------~~~~~~~~~~~G~~~~a~~~~  268 (271)
                      ++++|..+++++.+..+..       ...++.++.+.|+.++|++.+
T Consensus       287 ~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l  333 (765)
T PRK10049        287 QPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVT  333 (765)
T ss_pred             CcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHH
Confidence            9999999999887654322       233455678889998887764

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=99.30  E-value=3e-09  Score=89.80  Aligned_cols=216  Identities=9%  Similarity=0.020  Sum_probs=148.9

Q ss_pred             chHHHHHH----hcCHHHHHHHHHHHHHcCCCCCHHHHHHH-HHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHH--HHH
Q 036275           44 PNLFVFIF----SIYFSDAHAVFEEMKRLGITPTMKSHMLL-LTAYSKTGNVAKCEGVINQMHKSGLKPDTFVIN--SML  116 (271)
Q Consensus        44 y~~ll~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l-i~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~--~li  116 (271)
                      +..+..+.    .|+++.|.+.+....+..  +++..+..+ ..+..+.|+.+.|...+.++.+.  .|+.....  ...
T Consensus        85 ~~~~~~gl~a~~eGd~~~A~k~l~~~~~~~--~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a  160 (398)
T PRK10747         85 RKQTEQALLKLAEGDYQQVEKLMTRNADHA--EQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRV  160 (398)
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHhcc--cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHH
Confidence            44444444    899999998888766542  233334333 44447889999999999999876  55554332  346


Q ss_pred             HHHHccCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHhchhCCCCC-------------------
Q 036275          117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP-------------------  177 (271)
Q Consensus       117 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~-------------------  177 (271)
                      ..+...|++++|...++++.+.. |-+......+...|.+.|++++|.+++..+.+.+..+                   
T Consensus       161 ~l~l~~g~~~~Al~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~  239 (398)
T PRK10747        161 RIQLARNENHAARHGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQA  239 (398)
T ss_pred             HHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH
Confidence            78899999999999999998874 5568889999999999999999999999888654332                   


Q ss_pred             ----------------------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHH
Q 036275          178 ----------------------DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTT  235 (271)
Q Consensus       178 ----------------------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~  235 (271)
                                            ++.....+..++...|+.++|.+++++..+.  .|+....  ++.+....++.+++.+
T Consensus       240 ~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~--~l~~~l~~~~~~~al~  315 (398)
T PRK10747        240 MADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLV--LLIPRLKTNNPEQLEK  315 (398)
T ss_pred             HHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH--HHHhhccCCChHHHHH
Confidence                                  2223334455566677777777777776653  4444222  2333334577777777


Q ss_pred             HHHHHHhcccchhH---HHHHHHhhccccccchhhh
Q 036275          236 LVRTMHKDMKTALP---IYFNLYGEKGVARSNLGQY  268 (271)
Q Consensus       236 ~~~~~~~~~~~~~~---~~~~~~~~~G~~~~a~~~~  268 (271)
                      ..++..+..+....   .+-.++.+.|++++|.+.|
T Consensus       316 ~~e~~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~l  351 (398)
T PRK10747        316 VLRQQIKQHGDTPLLWSTLGQLLMKHGEWQEASLAF  351 (398)
T ss_pred             HHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence            77777666555443   2345677777777777665

>TIGR00540 hemY_coli hemY protein

Probab=99.30  E-value=5.7e-09  Score=88.49  Aligned_cols=119  Identities=7%  Similarity=0.077  Sum_probs=65.4

Q ss_pred             hcCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHhHHHH
Q 036275           52 SIYFSDAHAVFEEMKRLGITPTM-KSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEE  130 (271)
Q Consensus        52 ~g~~~~A~~~~~~~~~~~~~~~~-~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~  130 (271)
                      .|+++.|.+.+.+..+..  |+. ..+-....+..+.|+.+.|.+.+.+..+....+.....-.....+...|+++.|..
T Consensus        97 ~g~~~~A~~~l~~~~~~~--~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~  174 (409)
T TIGR00540        97 EGDYAKAEKLIAKNADHA--AEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARH  174 (409)
T ss_pred             CCCHHHHHHHHHHHhhcC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHH
Confidence            667777776666655442  332 22233344555566666666666666544222222222333555566666666666


Q ss_pred             HHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHhchhC
Q 036275          131 VLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAK  173 (271)
Q Consensus       131 ~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~  173 (271)
                      .++.+.+.. |-+..+...+...+...|++++|.+.+..+.+.
T Consensus       175 ~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~  216 (409)
T TIGR00540       175 GVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKA  216 (409)
T ss_pred             HHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHc
Confidence            666666653 334555666666666666666666666655543

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>TIGR00540 hemY_coli hemY protein

Probab=99.29  E-value=1.4e-09  Score=92.17  Aligned_cols=213  Identities=11%  Similarity=0.008  Sum_probs=135.5

Q ss_pred             hcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH---HccCCHhHH
Q 036275           52 SIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLY---GRLGQFEKM  128 (271)
Q Consensus        52 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~---~~~g~~~~a  128 (271)
                      .|+++.|.+.++.+.+.. |-++..+..+...+.+.|++++|.+.+.++.+.++.++......-..++   ...+..++.
T Consensus       166 ~~~~~~Al~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~  244 (409)
T TIGR00540       166 QNELHAARHGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEG  244 (409)
T ss_pred             CCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            677777777777777665 4466667777777777777777777777777765432222211111111   222222222


Q ss_pred             HHHHHHHHhCC---CCCChhhHHHHHHHHHcCCCHHHHHHHHHhchhCCCCCCHHH---HHHHHHHHHhcCCHHHHHHHH
Q 036275          129 EEVLTAMEKGS---YAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVT---WTSRLAAYSRKKLYRRCLEIF  202 (271)
Q Consensus       129 ~~~~~~m~~~~---~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~---~~~li~~~~~~g~~~~a~~~~  202 (271)
                      .+.+..+.+..   .+.+...+..+...+...|+.++|.+++++..+.  .|+...   ...........++.+.+.+.+
T Consensus       245 ~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~--~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~  322 (409)
T TIGR00540       245 IDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK--LGDDRAISLPLCLPIPRLKPEDNEKLEKLI  322 (409)
T ss_pred             HHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh--CCCcccchhHHHHHhhhcCCCChHHHHHHH
Confidence            33333333321   1136777788888899999999999999998876  344332   111222233457788888888


Q ss_pred             HHHHHCCCCCCH---HHHHHHHHHHhccCcHHHHHHHHHH--HHhccc--chhHHHHHHHhhccccccchhhhh
Q 036275          203 EEMIDAGCYPDG---GTAKVLISACSSEDQIEQVTTLVRT--MHKDMK--TALPIYFNLYGEKGVARSNLGQYI  269 (271)
Q Consensus       203 ~~m~~~~~~p~~---~~~~~l~~~~~~~g~~~~a~~~~~~--~~~~~~--~~~~~~~~~~~~~G~~~~a~~~~~  269 (271)
                      +...+.  .|+.   ....++...+.+.|++++|.+.|+.  ..+..+  .....+..++.+.|+.++|.+.|.
T Consensus       323 e~~lk~--~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~  394 (409)
T TIGR00540       323 EKQAKN--VDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQ  394 (409)
T ss_pred             HHHHHh--CCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            887764  3444   4556788889999999999999994  443333  334567788999999999887763

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.26  E-value=2.3e-09  Score=87.65  Aligned_cols=212  Identities=15%  Similarity=0.092  Sum_probs=127.4

Q ss_pred             CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCC--CC-----------------------
Q 036275           54 YFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLK--PD-----------------------  108 (271)
Q Consensus        54 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~--~~-----------------------  108 (271)
                      +.+++..-.......|.+.+...-+....+.....+++.|+.+|+++.+...-  -|                       
T Consensus       242 q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~LA~~  321 (559)
T KOG1155|consen  242 QHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYLAQN  321 (559)
T ss_pred             HHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHHHHH
Confidence            44555555555555554433333333334444455556666666555544210  01                       


Q ss_pred             --------HHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHhchhCCCCCCHH
Q 036275          109 --------TFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVV  180 (271)
Q Consensus       109 --------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~  180 (271)
                              +.|+..+.+-|.-.++.++|..+|++..+.+ +-....|+.+.+-|...++...|.+.+++..+-. +.|-.
T Consensus       322 v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~-p~DyR  399 (559)
T KOG1155|consen  322 VSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDIN-PRDYR  399 (559)
T ss_pred             HHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcC-chhHH
Confidence                    2233334444444556777777777777653 3345677777777777777777777777776652 33556


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhcccchhHH---HHHHHhh
Q 036275          181 TWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKDMKTALPI---YFNLYGE  257 (271)
Q Consensus       181 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~---~~~~~~~  257 (271)
                      .|..|.++|.-.+.+.=|+-.|++..+.. +-|...|.+|.++|.+.++.++|.+.|++...-+......   +.++|.+
T Consensus       400 AWYGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~  478 (559)
T KOG1155|consen  400 AWYGLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEE  478 (559)
T ss_pred             HHhhhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHH
Confidence            77777777777777777777777766653 4466777777777777777777777777776655443333   4455666


Q ss_pred             ccccccchhhh
Q 036275          258 KGVARSNLGQY  268 (271)
Q Consensus       258 ~G~~~~a~~~~  268 (271)
                      .++..+|...|
T Consensus       479 l~d~~eAa~~y  489 (559)
T KOG1155|consen  479 LKDLNEAAQYY  489 (559)
T ss_pred             HHhHHHHHHHH
Confidence            66666666554

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=99.25  E-value=1.3e-08  Score=76.27  Aligned_cols=198  Identities=9%  Similarity=0.002  Sum_probs=168.1

Q ss_pred             HHHHHH--hcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC
Q 036275           46 LFVFIF--SIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLG  123 (271)
Q Consensus        46 ~ll~~~--~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g  123 (271)
                      .|--.|  .|++..|.+-+++..+++ |-+..+|..+...|-+.|..+.|.+-|++..+.... +-...|.....+|..|
T Consensus        40 qLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~-~GdVLNNYG~FLC~qg  117 (250)
T COG3063          40 QLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPN-NGDVLNNYGAFLCAQG  117 (250)
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCC-ccchhhhhhHHHHhCC
Confidence            344445  999999999999999987 668889999999999999999999999999987533 5567888899999999


Q ss_pred             CHhHHHHHHHHHHhCCCC-CChhhHHHHHHHHHcCCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 036275          124 QFEKMEEVLTAMEKGSYA-ADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIF  202 (271)
Q Consensus       124 ~~~~a~~~~~~m~~~~~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~  202 (271)
                      ++++|...|++......- .-..+|..+.-+..+.|+.+.|.+.|++..+... -.+.+.-.+.+.....|++..|...+
T Consensus       118 ~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp-~~~~~~l~~a~~~~~~~~y~~Ar~~~  196 (250)
T COG3063         118 RPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDP-QFPPALLELARLHYKAGDYAPARLYL  196 (250)
T ss_pred             ChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCc-CCChHHHHHHHHHHhcccchHHHHHH
Confidence            999999999998876332 3467899999999999999999999999887632 23567888889999999999999999


Q ss_pred             HHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhcccch
Q 036275          203 EEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKDMKTA  247 (271)
Q Consensus       203 ~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~  247 (271)
                      +.....+. ++.......|+.-...|+.+.+.++=..+.+..+.+
T Consensus       197 ~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~s  240 (250)
T COG3063         197 ERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPYS  240 (250)
T ss_pred             HHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCc
Confidence            99888764 899999999999999999999999888887766543

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=99.25  E-value=6.1e-10  Score=94.49  Aligned_cols=212  Identities=11%  Similarity=-0.049  Sum_probs=172.2

Q ss_pred             HHHHHHHhhcC---chHHHHHH--hcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC
Q 036275           33 MLINFLLLQHT---PNLFVFIF--SIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKP  107 (271)
Q Consensus        33 ~~~~f~~~~~~---y~~ll~~~--~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~  107 (271)
                      +-.+.+.+|.+   |-++-..|  +++.+.|++.|++..+.+ +-...+|+.+..-+.....+|.|...|+..+..... 
T Consensus       410 aq~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQld-p~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~r-  487 (638)
T KOG1126|consen  410 AQDLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLD-PRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPR-  487 (638)
T ss_pred             HHHHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccC-CccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCch-
Confidence            44555555554   88888889  999999999999998876 447899999999999999999999999988754211 


Q ss_pred             CHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHhchhCCCCCCHHHHHHHHH
Q 036275          108 DTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLA  187 (271)
Q Consensus       108 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~  187 (271)
                      .-..|--+...|.+.++++.|+-.|+...+.+ |.+.+....+...+-+.|+.++|++++++......+ |+..--..+.
T Consensus       488 hYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN-P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~k-n~l~~~~~~~  565 (638)
T KOG1126|consen  488 HYNAWYGLGTVYLKQEKLEFAEFHFQKAVEIN-PSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPK-NPLCKYHRAS  565 (638)
T ss_pred             hhHHHHhhhhheeccchhhHHHHHHHhhhcCC-ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCC-CchhHHHHHH
Confidence            22344557888999999999999999999874 556788888999999999999999999998876432 5555566677


Q ss_pred             HHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHHHhcccchhHH
Q 036275          188 AYSRKKLYRRCLEIFEEMIDAGCYPD-GGTAKVLISACSSEDQIEQVTTLVRTMHKDMKTALPI  250 (271)
Q Consensus       188 ~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~  250 (271)
                      .+...++.++|+..++++++.  .|+ ...|..+.+.|.+.|+.+.|..-|.-+.+-.+.....
T Consensus       566 il~~~~~~~eal~~LEeLk~~--vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg~~i  627 (638)
T KOG1126|consen  566 ILFSLGRYVEALQELEELKEL--VPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKGAQI  627 (638)
T ss_pred             HHHhhcchHHHHHHHHHHHHh--CcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCccchh
Confidence            778889999999999999986  565 4567788889999999999999999887766555443

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=99.24  E-value=9.7e-09  Score=93.69  Aligned_cols=193  Identities=8%  Similarity=0.005  Sum_probs=152.3

Q ss_pred             hcCHHHHHHHHHHHHHcCCC-C-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHccCCHh
Q 036275           52 SIYFSDAHAVFEEMKRLGIT-P-TMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKP---DTFVINSMLNLYGRLGQFE  126 (271)
Q Consensus        52 ~g~~~~A~~~~~~~~~~~~~-~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~---~~~~~~~li~~~~~~g~~~  126 (271)
                      .|++++|++.|+.+.+.+.+ | +...+  +...|...|++++|+.+|+++.+.....   .......+..++...|+++
T Consensus       250 ~g~~~eA~~~~~~ll~~~~~~P~~a~~~--la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~  327 (765)
T PRK10049        250 RDRYKDVISEYQRLKAEGQIIPPWAQRW--VASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYP  327 (765)
T ss_pred             hhhHHHHHHHHHHhhccCCCCCHHHHHH--HHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHH
Confidence            89999999999999887622 2 22333  5778999999999999999988653211   1345666777889999999


Q ss_pred             HHHHHHHHHHhCC-----------CCCC---hhhHHHHHHHHHcCCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhc
Q 036275          127 KMEEVLTAMEKGS-----------YAAD---ISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRK  192 (271)
Q Consensus       127 ~a~~~~~~m~~~~-----------~~~~---~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~  192 (271)
                      +|.++++.+.+..           -.|+   ...+..+...+...|++++|+++++++.... +-+...+..+...+...
T Consensus       328 eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~-P~n~~l~~~lA~l~~~~  406 (765)
T PRK10049        328 GALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNA-PGNQGLRIDYASVLQAR  406 (765)
T ss_pred             HHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhc
Confidence            9999999998752           0122   2345678889999999999999999998763 34577889999999999


Q ss_pred             CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhcccchh
Q 036275          193 KLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKDMKTAL  248 (271)
Q Consensus       193 g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~  248 (271)
                      |++++|.+.+++..+.. +-+...+......+...|++++|..+++++.+..+...
T Consensus       407 g~~~~A~~~l~~al~l~-Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~  461 (765)
T PRK10049        407 GWPRAAENELKKAEVLE-PRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQDP  461 (765)
T ss_pred             CCHHHHHHHHHHHHhhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCH
Confidence            99999999999988863 33356666777788999999999999999988765544

>PRK11189 lipoprotein NlpI; Provisional

Probab=99.22  E-value=1.2e-08  Score=82.73  Aligned_cols=198  Identities=9%  Similarity=-0.047  Sum_probs=142.4

Q ss_pred             chHHHHHH--hcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 036275           44 PNLFVFIF--SIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGR  121 (271)
Q Consensus        44 y~~ll~~~--~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~  121 (271)
                      |..+-..|  .|++++|...|++..+.+ |.++..|+.+...+...|++++|...|++..+.... +..++..+..++..
T Consensus        67 ~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~l~~  144 (296)
T PRK11189         67 HYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPT-YNYAYLNRGIALYY  144 (296)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHH
Confidence            44444455  899999999999998876 668899999999999999999999999999987422 46678888888999


Q ss_pred             cCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 036275          122 LGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEI  201 (271)
Q Consensus       122 ~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~  201 (271)
                      .|++++|.+.++...+.  .|+..............++.++|...|.+..... .|+  .|.. .......|+..++ ..
T Consensus       145 ~g~~~eA~~~~~~al~~--~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~-~~~--~~~~-~~~~~~lg~~~~~-~~  217 (296)
T PRK11189        145 GGRYELAQDDLLAFYQD--DPNDPYRALWLYLAESKLDPKQAKENLKQRYEKL-DKE--QWGW-NIVEFYLGKISEE-TL  217 (296)
T ss_pred             CCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhC-Ccc--ccHH-HHHHHHccCCCHH-HH
Confidence            99999999999999886  3443222222233456788999999997755332 233  2321 2233345555444 34


Q ss_pred             HHHHHHC---CC--C-CCHHHHHHHHHHHhccCcHHHHHHHHHHHHhcccchhHH
Q 036275          202 FEEMIDA---GC--Y-PDGGTAKVLISACSSEDQIEQVTTLVRTMHKDMKTALPI  250 (271)
Q Consensus       202 ~~~m~~~---~~--~-p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~  250 (271)
                      +..+.+.   ..  . .....|..+...+...|+.++|...|++..+.+++....
T Consensus       218 ~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~~~e  272 (296)
T PRK11189        218 MERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVYNFVE  272 (296)
T ss_pred             HHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCchHHH
Confidence            4444421   11  1 123578889999999999999999999999887655443

>PRK11189 lipoprotein NlpI; Provisional

Probab=99.22  E-value=1.5e-08  Score=82.06  Aligned_cols=209  Identities=11%  Similarity=-0.019  Sum_probs=147.0

Q ss_pred             hcCHHHHHHHHHHHHHcC-CCC--CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHhHH
Q 036275           52 SIYFSDAHAVFEEMKRLG-ITP--TMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKM  128 (271)
Q Consensus        52 ~g~~~~A~~~~~~~~~~~-~~~--~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a  128 (271)
                      .+..+.++.-+.++.... ..|  ....|..+...+...|+.++|...|++..+... .+...|+.+...+...|++++|
T Consensus        39 ~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P-~~~~a~~~lg~~~~~~g~~~~A  117 (296)
T PRK11189         39 TLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRP-DMADAYNYLGIYLTQAGNFDAA  117 (296)
T ss_pred             chHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHCCCHHHH
Confidence            566778888888887543 112  256688888899999999999999999998753 3678899999999999999999


Q ss_pred             HHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 036275          129 EEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDA  208 (271)
Q Consensus       129 ~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~  208 (271)
                      ...|+...+.. +.+..++..+..++...|++++|.+.|+...+.  .|+..........+...++.++|...+.+....
T Consensus       118 ~~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~--~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~  194 (296)
T PRK11189        118 YEAFDSVLELD-PTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD--DPNDPYRALWLYLAESKLDPKQAKENLKQRYEK  194 (296)
T ss_pred             HHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhh
Confidence            99999999863 345778889999999999999999999998876  454332222223344577899999999776543


Q ss_pred             CCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhc---cc-------chhHHHHHHHhhccccccchhhhh
Q 036275          209 GCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKD---MK-------TALPIYFNLYGEKGVARSNLGQYI  269 (271)
Q Consensus       209 ~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~-------~~~~~~~~~~~~~G~~~~a~~~~~  269 (271)
                      . .|+...+ .+...  ..|+.+.+ +.+..+.+.   .+       ..+..+-..|.+.|+.++|+..|.
T Consensus       195 ~-~~~~~~~-~~~~~--~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~  260 (296)
T PRK11189        195 L-DKEQWGW-NIVEF--YLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFK  260 (296)
T ss_pred             C-CccccHH-HHHHH--HccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence            2 3332222 22322  23444433 244444321   11       123334566899999999998773

>PRK14574 hmsH outer membrane protein; Provisional

Probab=99.17  E-value=2.2e-08  Score=90.69  Aligned_cols=191  Identities=10%  Similarity=0.027  Sum_probs=152.0

Q ss_pred             chHHHHHH-hcCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 036275           44 PNLFVFIF-SIYFSDAHAVFEEMKRLGITPT-MKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGR  121 (271)
Q Consensus        44 y~~ll~~~-~g~~~~A~~~~~~~~~~~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~  121 (271)
                      |...|..+ .|+++.|++.|.+..+.. |-+ ...+ .++..+...|+.++|+.++++.... -.........+...+..
T Consensus        38 y~~aii~~r~Gd~~~Al~~L~qaL~~~-P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p-~n~~~~~llalA~ly~~  114 (822)
T PRK14574         38 YDSLIIRARAGDTAPVLDYLQEESKAG-PLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSS-MNISSRGLASAARAYRN  114 (822)
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHHHhhC-ccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccC-CCCCHHHHHHHHHHHHH
Confidence            88888888 999999999999998875 323 2344 8888899999999999999999822 12233444445668889


Q ss_pred             cCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 036275          122 LGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEI  201 (271)
Q Consensus       122 ~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~  201 (271)
                      .|++++|+++++++.+.. +.+...+..++..+...++.++|++.++++...  .|+...+..++..+...++..+|.+.
T Consensus       115 ~gdyd~Aiely~kaL~~d-P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~  191 (822)
T PRK14574        115 EKRWDQALALWQSSLKKD-PTNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQA  191 (822)
T ss_pred             cCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHH
Confidence            999999999999999874 455778888899999999999999999999876  56666664444444456677679999


Q ss_pred             HHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHH
Q 036275          202 FEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMH  241 (271)
Q Consensus       202 ~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~  241 (271)
                      ++++.+.. +-+...+..++.++.+.|-...|.++.++-.
T Consensus       192 ~ekll~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p  230 (822)
T PRK14574        192 SSEAVRLA-PTSEEVLKNHLEILQRNRIVEPALRLAKENP  230 (822)
T ss_pred             HHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCc
Confidence            99999874 4467778888999999999999988877543

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.15  E-value=1.2e-08  Score=83.53  Aligned_cols=166  Identities=12%  Similarity=0.057  Sum_probs=94.9

Q ss_pred             CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChhhHHHHHH
Q 036275           73 TMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILIN  152 (271)
Q Consensus        73 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~  152 (271)
                      -+.|...+.+-|+-.++.++|..+|++..+.+.. ....|+.+..-|....+...|++-+....+.. |.|-..|-.|..
T Consensus       329 R~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~-~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~-p~DyRAWYGLGQ  406 (559)
T KOG1155|consen  329 RPETCCIIANYYSLRSEHEKAVMYFKRALKLNPK-YLSAWTLMGHEYVEMKNTHAAIESYRRAVDIN-PRDYRAWYGLGQ  406 (559)
T ss_pred             CccceeeehhHHHHHHhHHHHHHHHHHHHhcCcc-hhHHHHHhhHHHHHhcccHHHHHHHHHHHhcC-chhHHHHhhhhH
Confidence            3455555566666666666666666666555322 34455556666666666666666666665543 445556666666


Q ss_pred             HHHcCCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHH
Q 036275          153 IYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQ  232 (271)
Q Consensus       153 ~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~  232 (271)
                      +|.-.+...-|+-.|++..... +-|+..|.+|...|.+.++.++|.+.|+.....| ..+...+..|.+.+.+.++..+
T Consensus       407 aYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~-dte~~~l~~LakLye~l~d~~e  484 (559)
T KOG1155|consen  407 AYEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLG-DTEGSALVRLAKLYEELKDLNE  484 (559)
T ss_pred             HHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHHHHhHHH
Confidence            6666666666666666555441 2245566666666666666666666666655544 2344555666666666666666


Q ss_pred             HHHHHHHHHh
Q 036275          233 VTTLVRTMHK  242 (271)
Q Consensus       233 a~~~~~~~~~  242 (271)
                      |.+.+++..+
T Consensus       485 Aa~~yek~v~  494 (559)
T KOG1155|consen  485 AAQYYEKYVE  494 (559)
T ss_pred             HHHHHHHHHH
Confidence            6666555443

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=99.12  E-value=2.8e-07  Score=74.33  Aligned_cols=215  Identities=11%  Similarity=0.037  Sum_probs=149.0

Q ss_pred             hcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHhHHHHH
Q 036275           52 SIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEV  131 (271)
Q Consensus        52 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~  131 (271)
                      .|+|..|++...+-.+.+ +.....|-.-..+.-+.|+.+.+-.++.+..+.-..++....-+..+.....|+.+.|..-
T Consensus        97 eG~~~qAEkl~~rnae~~-e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~  175 (400)
T COG3071          97 EGDFQQAEKLLRRNAEHG-EQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN  175 (400)
T ss_pred             cCcHHHHHHHHHHhhhcC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence            899999999998887776 3344456666677777888888888888887764455555566666777777777777777


Q ss_pred             HHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHhchhCCC------------------------------------
Q 036275          132 LTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL------------------------------------  175 (271)
Q Consensus       132 ~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~------------------------------------  175 (271)
                      .+++.+.+ +..+........+|.+.|++.....++..+.+.|.                                    
T Consensus       176 v~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~  254 (400)
T COG3071         176 VDQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKN  254 (400)
T ss_pred             HHHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHh
Confidence            77777764 45566777777788888888777777777766544                                    


Q ss_pred             -----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC------------------------------CCHHHHHHH
Q 036275          176 -----KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCY------------------------------PDGGTAKVL  220 (271)
Q Consensus       176 -----~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~------------------------------p~~~~~~~l  220 (271)
                           +-++..-..++.-+.+.|+.++|.++..+..+++..                              -+...+.+|
T Consensus       255 ~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~~~~~~l~~~d~~~l~k~~e~~l~~h~~~p~L~~tL  334 (400)
T COG3071         255 QPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLCRLIPRLRPGDPEPLIKAAEKWLKQHPEDPLLLSTL  334 (400)
T ss_pred             ccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHHHHHhhcCCCCchHHHHHHHHHHHhCCCChhHHHHH
Confidence                 112333444455556677777777776665544321                              233567778


Q ss_pred             HHHHhccCcHHHHHHHHHHHHhcccc--hhHHHHHHHhhccccccchhhh
Q 036275          221 ISACSSEDQIEQVTTLVRTMHKDMKT--ALPIYFNLYGEKGVARSNLGQY  268 (271)
Q Consensus       221 ~~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~~~~~~G~~~~a~~~~  268 (271)
                      -..|.+.+.+.+|...|+...+..+.  .+..+-++|.+.|+..+|-+.+
T Consensus       335 G~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~~~g~~~~A~~~r  384 (400)
T COG3071         335 GRLALKNKLWGKASEALEAALKLRPSASDYAELADALDQLGEPEEAEQVR  384 (400)
T ss_pred             HHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHcCChHHHHHHH
Confidence            88888888888888888877655443  4455677788888887776543

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=99.10  E-value=1.7e-08  Score=85.90  Aligned_cols=224  Identities=15%  Similarity=0.156  Sum_probs=162.3

Q ss_pred             chHHHHHH--hcCHHHHHHHHHHHHHc-----C-CCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHHC-----CC-CC-
Q 036275           44 PNLFVFIF--SIYFSDAHAVFEEMKRL-----G-ITPTM-KSHMLLLTAYSKTGNVAKCEGVINQMHKS-----GL-KP-  107 (271)
Q Consensus        44 y~~ll~~~--~g~~~~A~~~~~~~~~~-----~-~~~~~-~~~~~li~~~~~~~~~~~a~~~~~~m~~~-----~~-~~-  107 (271)
                      ...+...|  .|+++.|+.++....+.     | .-|.. ...+.+...|...+++.+|..+|+++...     |- .| 
T Consensus       202 ~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~  281 (508)
T KOG1840|consen  202 LRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPA  281 (508)
T ss_pred             HHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHH
Confidence            44477777  99999999999988665     1 12232 33345777888999999999999988653     21 22 


Q ss_pred             CHHHHHHHHHHHHccCCHhHHHHHHHHHHhC-----CC-CCC-hhhHHHHHHHHHcCCCHHHHHHHHHhchhC---CCCC
Q 036275          108 DTFVINSMLNLYGRLGQFEKMEEVLTAMEKG-----SY-AAD-ISTYNILINIYGRGGFIEKMEGLFQSLPAK---RLKP  177 (271)
Q Consensus       108 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-----~~-~~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~---g~~~  177 (271)
                      -..+++.|..+|.+.|++++|..++++..+-     |. .|. ...++.++..++..+++++|..+++...+.   -+.+
T Consensus       282 va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~  361 (508)
T KOG1840|consen  282 VAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGE  361 (508)
T ss_pred             HHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccc
Confidence            2356788888999999999999888876531     11 233 345677888999999999999999875431   1122


Q ss_pred             C----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-----C-CCCC-HHHHHHHHHHHhccCcHHHHHHHHHHHHhc---
Q 036275          178 D----VVTWTSRLAAYSRKKLYRRCLEIFEEMIDA-----G-CYPD-GGTAKVLISACSSEDQIEQVTTLVRTMHKD---  243 (271)
Q Consensus       178 ~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-----~-~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---  243 (271)
                      +    ..+++.|...|...|++++|.+++++.+..     | ..+. ...++.+...|.+.+...+|.++|.+...-   
T Consensus       362 ~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~  441 (508)
T KOG1840|consen  362 DNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKL  441 (508)
T ss_pred             cchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHH
Confidence            2    358999999999999999999999987642     1 1222 456778888899999999999998875431   


Q ss_pred             -ccc------hhHHHHHHHhhccccccchhh
Q 036275          244 -MKT------ALPIYFNLYGEKGVARSNLGQ  267 (271)
Q Consensus       244 -~~~------~~~~~~~~~~~~G~~~~a~~~  267 (271)
                       ++.      +...+...|...|+.++|++.
T Consensus       442 ~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~  472 (508)
T KOG1840|consen  442 CGPDHPDVTYTYLNLAALYRAQGNYEAAEEL  472 (508)
T ss_pred             hCCCCCchHHHHHHHHHHHHHcccHHHHHHH
Confidence             211      233456679999999999874

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=99.09  E-value=8.5e-08  Score=71.94  Aligned_cols=174  Identities=10%  Similarity=0.020  Sum_probs=146.6

Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHH
Q 036275           75 KSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIY  154 (271)
Q Consensus        75 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~  154 (271)
                      .+...|.-.|.+.|+...|..-+++.++... -+..+|..+...|-+.|+.+.|.+.|+...... +-+..+.|.....+
T Consensus        36 ~arlqLal~YL~~gd~~~A~~nlekAL~~DP-s~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FL  113 (250)
T COG3063          36 KARLQLALGYLQQGDYAQAKKNLEKALEHDP-SYYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFL  113 (250)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHH
Confidence            3455677889999999999999999999853 356789999999999999999999999998863 45678899999999


Q ss_pred             HcCCCHHHHHHHHHhchhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHH
Q 036275          155 GRGGFIEKMEGLFQSLPAKRLKPD-VVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQV  233 (271)
Q Consensus       155 ~~~g~~~~a~~~~~~m~~~g~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a  233 (271)
                      |..|++++|...|++....-.-+. ..+|..+.-+..+.|+++.|...|++-++.. +-...+...+.+...+.|++..|
T Consensus       114 C~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d-p~~~~~~l~~a~~~~~~~~y~~A  192 (250)
T COG3063         114 CAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELD-PQFPPALLELARLHYKAGDYAPA  192 (250)
T ss_pred             HhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC-cCCChHHHHHHHHHHhcccchHH
Confidence            999999999999999887532222 4589999999999999999999999998864 33456778889999999999999


Q ss_pred             HHHHHHHHhcccchhHHH
Q 036275          234 TTLVRTMHKDMKTALPIY  251 (271)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~  251 (271)
                      ..+++.....+...-..+
T Consensus       193 r~~~~~~~~~~~~~A~sL  210 (250)
T COG3063         193 RLYLERYQQRGGAQAESL  210 (250)
T ss_pred             HHHHHHHHhcccccHHHH
Confidence            999999988776554443

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.08  E-value=1.8e-08  Score=79.18  Aligned_cols=218  Identities=10%  Similarity=-0.017  Sum_probs=174.5

Q ss_pred             hHHHHHH--hcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHH-HHHHHHHHc
Q 036275           45 NLFVFIF--SIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVI-NSMLNLYGR  121 (271)
Q Consensus        45 ~~ll~~~--~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~-~~li~~~~~  121 (271)
                      +.+-++|  .|.+.+|.+.|+...+.  .|-+.||-.|-++|.+..+...|+.++.+-.+.  .|-.+|| .-+.+.+-.
T Consensus       227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~--fP~~VT~l~g~ARi~ea  302 (478)
T KOG1129|consen  227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS--FPFDVTYLLGQARIHEA  302 (478)
T ss_pred             HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc--CCchhhhhhhhHHHHHH
Confidence            3455566  99999999999988776  467788999999999999999999999888876  4555554 457778888


Q ss_pred             cCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 036275          122 LGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEI  201 (271)
Q Consensus       122 ~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~  201 (271)
                      .++.++|.++++...+.. +.++.....+...|.-.++.+-|++.++++.+-|+. ++..|+.+.-+|.-.++++-++..
T Consensus       303 m~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~s  380 (478)
T KOG1129|consen  303 MEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPS  380 (478)
T ss_pred             HHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHH
Confidence            899999999999988873 567778888888899999999999999999998865 788999999999999999999988


Q ss_pred             HHHHHHCCCCCCH--HHHHHHHHHHhccCcHHHHHHHHHHHHhcccchhHHHHHH---Hhhccccccchhhh
Q 036275          202 FEEMIDAGCYPDG--GTAKVLISACSSEDQIEQVTTLVRTMHKDMKTALPIYFNL---YGEKGVARSNLGQY  268 (271)
Q Consensus       202 ~~~m~~~~~~p~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~---~~~~G~~~~a~~~~  268 (271)
                      |.+.+..--.|+.  ..|-.+-......||+..|.+.|+-....+......+.++   =.+.|+.+.|...+
T Consensus       381 f~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll  452 (478)
T KOG1129|consen  381 FQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLL  452 (478)
T ss_pred             HHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHH
Confidence            8887764333443  3566677777888999999999998887776666555443   45678777776554

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=99.07  E-value=1.2e-07  Score=74.50  Aligned_cols=195  Identities=13%  Similarity=0.102  Sum_probs=115.2

Q ss_pred             HHHHHH--hcCHHHHHHHHHHHHHcC-CCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 036275           46 LFVFIF--SIYFSDAHAVFEEMKRLG-ITPT--MKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYG  120 (271)
Q Consensus        46 ~ll~~~--~g~~~~A~~~~~~~~~~~-~~~~--~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~  120 (271)
                      +|-+.|  .|..|+|+++-..+.++- .+-.  ......|..-|...|-+|.|+.+|..+.+.+ ..-......|+..|-
T Consensus        74 tLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE~~f~~L~de~-efa~~AlqqLl~IYQ  152 (389)
T COG2956          74 TLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRAEDIFNQLVDEG-EFAEGALQQLLNIYQ  152 (389)
T ss_pred             HHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhcch-hhhHHHHHHHHHHHH
Confidence            455555  777777777777766542 1111  2233455666667777777777777776654 224445566777777


Q ss_pred             ccCCHhHHHHHHHHHHhCCCCCC----hhhHHHHHHHHHcCCCHHHHHHHHHhchhCCCCCCH-HHHHHHHHHHHhcCCH
Q 036275          121 RLGQFEKMEEVLTAMEKGSYAAD----ISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDV-VTWTSRLAAYSRKKLY  195 (271)
Q Consensus       121 ~~g~~~~a~~~~~~m~~~~~~~~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~-~~~~~li~~~~~~g~~  195 (271)
                      ...+|++|+++-+++.+.+-.+.    ...|--|...+.-..+.+.|..++.+..+..  |+. ..--.+.+.....|++
T Consensus       153 ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~--~~cvRAsi~lG~v~~~~g~y  230 (389)
T COG2956         153 ATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQAD--KKCVRASIILGRVELAKGDY  230 (389)
T ss_pred             HhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhC--ccceehhhhhhHHHHhccch
Confidence            77777777777766665542221    1234555666666666666666666665542  222 2223334556666677


Q ss_pred             HHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhc
Q 036275          196 RRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKD  243 (271)
Q Consensus       196 ~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~  243 (271)
                      ..|.+.++...+.+...-..+...|..+|...|+.++....+.++.+.
T Consensus       231 ~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~  278 (389)
T COG2956         231 QKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMET  278 (389)
T ss_pred             HHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHc
Confidence            777666666666554444455666666666667766666666665543

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=99.06  E-value=2e-07  Score=82.12  Aligned_cols=89  Identities=12%  Similarity=0.107  Sum_probs=72.0

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhcccchh---HHHHHHHh
Q 036275          180 VTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKDMKTAL---PIYFNLYG  256 (271)
Q Consensus       180 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~~~  256 (271)
                      ..|..+..++.+.|++.+|+.+|..+......-+...|..+.+++...|..++|.+.+++.....+...   ..+..+|-
T Consensus       415 dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~  494 (895)
T KOG2076|consen  415 DLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILAPDNLDARITLASLYQ  494 (895)
T ss_pred             HHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCCchhhhhhHHHHHH
Confidence            347777888888999999999999988765555677888889999999999999999999887665554   34566799


Q ss_pred             hccccccchhhh
Q 036275          257 EKGVARSNLGQY  268 (271)
Q Consensus       257 ~~G~~~~a~~~~  268 (271)
                      +.|+.++|++..
T Consensus       495 ~~g~~EkalEtL  506 (895)
T KOG2076|consen  495 QLGNHEKALETL  506 (895)
T ss_pred             hcCCHHHHHHHH
Confidence            999999988754

>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]

Probab=99.06  E-value=2.9e-09  Score=93.19  Aligned_cols=70  Identities=13%  Similarity=0.006  Sum_probs=56.4

Q ss_pred             CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhcccchh
Q 036275          176 KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKDMKTAL  248 (271)
Q Consensus       176 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~  248 (271)
                      .|++.+|..++..-..+|+.+.|..++.+|.+.|++.+.+-|..|+-+   .++...+..+++.|.+.|+.+.
T Consensus       201 ~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~  270 (1088)
T KOG4318|consen  201 APTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPG  270 (1088)
T ss_pred             CCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCC
Confidence            578888888888888889999999999999988888888877777654   6778888888888887765543

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.05  E-value=7.5e-08  Score=78.99  Aligned_cols=189  Identities=13%  Similarity=0.158  Sum_probs=107.5

Q ss_pred             hcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHhHHHHH
Q 036275           52 SIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEV  131 (271)
Q Consensus        52 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~  131 (271)
                      .|+++.|.+.|++....+.. -......+.-.+-..|++++|++.|-++...- .-+......+.+.|-...+...|+++
T Consensus       503 ngd~dka~~~ykeal~ndas-c~ealfniglt~e~~~~ldeald~f~klh~il-~nn~evl~qianiye~led~aqaie~  580 (840)
T KOG2003|consen  503 NGDLDKAAEFYKEALNNDAS-CTEALFNIGLTAEALGNLDEALDCFLKLHAIL-LNNAEVLVQIANIYELLEDPAQAIEL  580 (840)
T ss_pred             cCcHHHHHHHHHHHHcCchH-HHHHHHHhcccHHHhcCHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHhhCHHHHHHH
Confidence            67777777777777655422 22222233334556677777777765554321 12444555566666666666666666


Q ss_pred             HHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 036275          132 LTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCY  211 (271)
Q Consensus       132 ~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~  211 (271)
                      +.+.... ++.|+...+.|...|-+.|+-..|.+.+-+-..- ++-+..|...|..-|....-++++...|++..-  +.
T Consensus       581 ~~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaal--iq  656 (840)
T KOG2003|consen  581 LMQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--IQ  656 (840)
T ss_pred             HHHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cC
Confidence            6555443 4455666666666666666666666655443322 233455555555556666666666666665432  35


Q ss_pred             CCHHHHHHHHHHH-hccCcHHHHHHHHHHHHhcccc
Q 036275          212 PDGGTAKVLISAC-SSEDQIEQVTTLVRTMHKDMKT  246 (271)
Q Consensus       212 p~~~~~~~l~~~~-~~~g~~~~a~~~~~~~~~~~~~  246 (271)
                      |+..-|..++..| .+.|++++|.++++...+..+.
T Consensus       657 p~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpe  692 (840)
T KOG2003|consen  657 PNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPE  692 (840)
T ss_pred             ccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCcc
Confidence            6666666665554 3456666666666666655443

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=99.05  E-value=2.3e-07  Score=79.87  Aligned_cols=121  Identities=14%  Similarity=0.104  Sum_probs=87.2

Q ss_pred             hHHHHHHHHHcCCCHHHHHHHHHhchhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 036275          146 TYNILINIYGRGGFIEKMEGLFQSLPAKRLKPD-VVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISAC  224 (271)
Q Consensus       146 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~  224 (271)
                      ++..+...|-..|++++|++.+++....  .|+ +..|..-.+.+-+.|++.+|.+.++..+... .-|...=+..+..+
T Consensus       196 ~~~~lAqhyd~~g~~~~Al~~Id~aI~h--tPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD-~~DRyiNsK~aKy~  272 (517)
T PF12569_consen  196 TLYFLAQHYDYLGDYEKALEYIDKAIEH--TPTLVELYMTKARILKHAGDLKEAAEAMDEARELD-LADRYINSKCAKYL  272 (517)
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCC-hhhHHHHHHHHHHH
Confidence            4456667777888888888888887776  455 5677777788888888888888888887765 33556666667777


Q ss_pred             hccCcHHHHHHHHHHHHhcccchhHH------------HHHHHhhccccccchhhhh
Q 036275          225 SSEDQIEQVTTLVRTMHKDMKTALPI------------YFNLYGEKGVARSNLGQYI  269 (271)
Q Consensus       225 ~~~g~~~~a~~~~~~~~~~~~~~~~~------------~~~~~~~~G~~~~a~~~~~  269 (271)
                      .+.|+.++|.+++....+.+..+...            .-.+|.+.|+...|++.|.
T Consensus       273 LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~  329 (517)
T PF12569_consen  273 LRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFH  329 (517)
T ss_pred             HHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence            88888888888888887665322211            2345888888888887763

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>PRK14574 hmsH outer membrane protein; Provisional

Probab=99.05  E-value=1.8e-07  Score=84.87  Aligned_cols=200  Identities=10%  Similarity=0.047  Sum_probs=160.9

Q ss_pred             HHHHHH-hcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCC-----CCCCHHHHHHHHHHH
Q 036275           46 LFVFIF-SIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSG-----LKPDTFVINSMLNLY  119 (271)
Q Consensus        46 ~ll~~~-~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~-----~~~~~~~~~~li~~~  119 (271)
                      .++... .|++.+|++.|+.+...+.+....+-..+.++|...++.++|+.+|+++....     ..++......|.-++
T Consensus       298 rl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~  377 (822)
T PRK14574        298 RLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSL  377 (822)
T ss_pred             HHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHH
Confidence            334444 99999999999999998876666788899999999999999999999997653     233444467899999


Q ss_pred             HccCCHhHHHHHHHHHHhCCC-------------CCC-hhhHHHHHHHHHcCCCHHHHHHHHHhchhCCCCCCHHHHHHH
Q 036275          120 GRLGQFEKMEEVLTAMEKGSY-------------AAD-ISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSR  185 (271)
Q Consensus       120 ~~~g~~~~a~~~~~~m~~~~~-------------~~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l  185 (271)
                      ...+++++|..+++.+.+..-             .|| ...+..++..+...|++.+|++.++++.... +-|......+
T Consensus       378 ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~a-P~n~~l~~~~  456 (822)
T PRK14574        378 NESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTA-PANQNLRIAL  456 (822)
T ss_pred             HhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence            999999999999999987310             122 2344567888999999999999999997763 4578889999


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhcccch
Q 036275          186 LAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKDMKTA  247 (271)
Q Consensus       186 i~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~  247 (271)
                      ...+...|.+.+|.+.++...... +-+..+......++...+++++|..+.+.+.+..+..
T Consensus       457 A~v~~~Rg~p~~A~~~~k~a~~l~-P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~Pe~  517 (822)
T PRK14574        457 ASIYLARDLPRKAEQELKAVESLA-PRSLILERAQAETAMALQEWHQMELLTDDVISRSPED  517 (822)
T ss_pred             HHHHHhcCCHHHHHHHHHHHhhhC-CccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhCCCc
Confidence            999999999999999997776652 3356677788888899999999999998887655443

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.03  E-value=9.5e-08  Score=78.43  Aligned_cols=181  Identities=14%  Similarity=0.210  Sum_probs=152.0

Q ss_pred             chHHHHHH-hcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc
Q 036275           44 PNLFVFIF-SIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRL  122 (271)
Q Consensus        44 y~~ll~~~-~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~  122 (271)
                      ||+=+.+- .|++++|++.|-++... +..++.+.-.+.+.|-...+...|++++-+.... ++.|+.....|.+.|-+.
T Consensus       528 fniglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~~sl-ip~dp~ilskl~dlydqe  605 (840)
T KOG2003|consen  528 FNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQANSL-IPNDPAILSKLADLYDQE  605 (840)
T ss_pred             HHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCHHHHHHHHHHhhcc
Confidence            66655555 99999999999888654 2347788888999999999999999999776654 456788899999999999


Q ss_pred             CCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHH-hcCCHHHHHHH
Q 036275          123 GQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYS-RKKLYRRCLEI  201 (271)
Q Consensus       123 g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~-~~g~~~~a~~~  201 (271)
                      |+-..|.+.+-+-.+. ++-+..+...|...|....-++++...|++...  ++|+.+-|..+|..|. +.|++.+|+.+
T Consensus       606 gdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaal--iqp~~~kwqlmiasc~rrsgnyqka~d~  682 (840)
T KOG2003|consen  606 GDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--IQPNQSKWQLMIASCFRRSGNYQKAFDL  682 (840)
T ss_pred             cchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cCccHHHHHHHHHHHHHhcccHHHHHHH
Confidence            9999999988666554 566788999999999999999999999998765  4899999999997765 68999999999


Q ss_pred             HHHHHHCCCCCCHHHHHHHHHHHhccCcH
Q 036275          202 FEEMIDAGCYPDGGTAKVLISACSSEDQI  230 (271)
Q Consensus       202 ~~~m~~~~~~p~~~~~~~l~~~~~~~g~~  230 (271)
                      ++..... ++-|......|++.|...|.-
T Consensus       683 yk~~hrk-fpedldclkflvri~~dlgl~  710 (840)
T KOG2003|consen  683 YKDIHRK-FPEDLDCLKFLVRIAGDLGLK  710 (840)
T ss_pred             HHHHHHh-CccchHHHHHHHHHhccccch
Confidence            9998765 677888999999999887743

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=99.02  E-value=2e-07  Score=75.16  Aligned_cols=187  Identities=14%  Similarity=0.124  Sum_probs=119.6

Q ss_pred             hcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHhHHHHH
Q 036275           52 SIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEV  131 (271)
Q Consensus        52 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~  131 (271)
                      .|+.+.+-+.+.+..+.--.++...+-.........|+.+.|..-.+++.+.+.. .+.......++|.+.|++..+..+
T Consensus       131 rgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v~~ll~~~pr-~~~vlrLa~r~y~~~g~~~~ll~~  209 (400)
T COG3071         131 RGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENVDQLLEMTPR-HPEVLRLALRAYIRLGAWQALLAI  209 (400)
T ss_pred             cccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHHHHHHHhCcC-ChHHHHHHHHHHHHhccHHHHHHH
Confidence            5555555555555544422334444444444444555555555555555544322 333444455555555555555555


Q ss_pred             HHHHHhCCC-----------------------------------------CCChhhHHHHHHHHHcCCCHHHHHHHHHhc
Q 036275          132 LTAMEKGSY-----------------------------------------AADISTYNILINIYGRGGFIEKMEGLFQSL  170 (271)
Q Consensus       132 ~~~m~~~~~-----------------------------------------~~~~~~~~~li~~~~~~g~~~~a~~~~~~m  170 (271)
                      +..+.+.|.                                         ..++..-.+++.-+.++|+.++|.++.++.
T Consensus       210 l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~  289 (400)
T COG3071         210 LPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDA  289 (400)
T ss_pred             HHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHH
Confidence            544444322                                         223444455666677777888887777766


Q ss_pred             hhCCC------------------------------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 036275          171 PAKRL------------------------------KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVL  220 (271)
Q Consensus       171 ~~~g~------------------------------~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l  220 (271)
                      .+.+.                              +-++..+.+|...|.+.+.|.+|...|+.....  .|+..+|..+
T Consensus       290 Lk~~~D~~L~~~~~~l~~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~--~~s~~~~~~l  367 (400)
T COG3071         290 LKRQWDPRLCRLIPRLRPGDPEPLIKAAEKWLKQHPEDPLLLSTLGRLALKNKLWGKASEALEAALKL--RPSASDYAEL  367 (400)
T ss_pred             HHhccChhHHHHHhhcCCCCchHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhc--CCChhhHHHH
Confidence            54432                              224467899999999999999999999976665  7999999999


Q ss_pred             HHHHhccCcHHHHHHHHHHHH
Q 036275          221 ISACSSEDQIEQVTTLVRTMH  241 (271)
Q Consensus       221 ~~~~~~~g~~~~a~~~~~~~~  241 (271)
                      ..++.+.|+..+|.++.++..
T Consensus       368 a~~~~~~g~~~~A~~~r~e~L  388 (400)
T COG3071         368 ADALDQLGEPEEAEQVRREAL  388 (400)
T ss_pred             HHHHHHcCChHHHHHHHHHHH
Confidence            999999999999999998865

>PF12854 PPR_1: PPR repeat

Probab=99.00  E-value=7.7e-10  Score=58.16  Aligned_cols=32  Identities=31%  Similarity=0.575  Sum_probs=14.7

Q ss_pred             CCCCChhhHHHHHHHHHcCCCHHHHHHHHHhc
Q 036275          139 SYAADISTYNILINIYGRGGFIEKMEGLFQSL  170 (271)
Q Consensus       139 ~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m  170 (271)
                      |+.||..+|++||++|++.|++++|.++|++|
T Consensus         2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M   33 (34)
T PF12854_consen    2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM   33 (34)
T ss_pred             CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence            34444444444444444444444444444444

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.99  E-value=9.3e-08  Score=78.98  Aligned_cols=212  Identities=12%  Similarity=0.051  Sum_probs=121.0

Q ss_pred             hcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHhHHHHH
Q 036275           52 SIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEV  131 (271)
Q Consensus        52 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~  131 (271)
                      .|+.-.|..-|+...+..-. +...|--+...|....+.++....|++..+.+.. ++.+|..-.....-.+++++|..=
T Consensus       339 ~g~~~~a~~d~~~~I~l~~~-~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~-n~dvYyHRgQm~flL~q~e~A~aD  416 (606)
T KOG0547|consen  339 KGDSLGAQEDFDAAIKLDPA-FNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPE-NPDVYYHRGQMRFLLQQYEEAIAD  416 (606)
T ss_pred             cCCchhhhhhHHHHHhcCcc-cchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCC-CCchhHhHHHHHHHHHHHHHHHHH
Confidence            66666777777776665422 2333555666666667777777777666665432 444555555555566666666666


Q ss_pred             HHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC---
Q 036275          132 LTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDA---  208 (271)
Q Consensus       132 ~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~---  208 (271)
                      |++.+... +.+...|-.+.-+..+.+.+++++..|++..++ ++-.+..|+.....+...+++++|.+-|+...+.   
T Consensus       417 F~Kai~L~-pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~  494 (606)
T KOG0547|consen  417 FQKAISLD-PENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPR  494 (606)
T ss_pred             HHHHhhcC-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccc
Confidence            66666542 334555556666666666677777777766654 3333556666666666677777777666665542   


Q ss_pred             --CCCCCHHHH--HHHHHHHhccCcHHHHHHHHHHHHhcccchhHH---HHHHHhhccccccchhhh
Q 036275          209 --GCYPDGGTA--KVLISACSSEDQIEQVTTLVRTMHKDMKTALPI---YFNLYGEKGVARSNLGQY  268 (271)
Q Consensus       209 --~~~p~~~~~--~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~---~~~~~~~~G~~~~a~~~~  268 (271)
                        ++..+..++  ..++.. .-.+++..|.+++++..+-++....+   +-.+-.+.|+.++|++.|
T Consensus       495 ~~~~~v~~~plV~Ka~l~~-qwk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielF  560 (606)
T KOG0547|consen  495 EHLIIVNAAPLVHKALLVL-QWKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELF  560 (606)
T ss_pred             cccccccchhhhhhhHhhh-chhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence              111122111  111111 12366666666666666655554333   334456666666666655

>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]

Probab=98.98  E-value=5e-09  Score=91.76  Aligned_cols=88  Identities=14%  Similarity=0.096  Sum_probs=78.8

Q ss_pred             CCChhhHHHHHHHHHcCCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 036275          141 AADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVL  220 (271)
Q Consensus       141 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l  220 (271)
                      .|+..+|.+++..-..+|+.+.|..++.+|++.|+..+.+-|..|+-+   .++..-+..+++.|.+.|+.|+..|+.-.
T Consensus       201 ~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~ady  277 (1088)
T KOG4318|consen  201 APTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADY  277 (1088)
T ss_pred             CCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHH
Confidence            489999999999999999999999999999999999999888888877   78888899999999999999999999988


Q ss_pred             HHHHhccCcHH
Q 036275          221 ISACSSEDQIE  231 (271)
Q Consensus       221 ~~~~~~~g~~~  231 (271)
                      +-.+.++|...
T Consensus       278 vip~l~N~~t~  288 (1088)
T KOG4318|consen  278 VIPQLSNGQTK  288 (1088)
T ss_pred             HHhhhcchhhh
Confidence            88877755533

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.98  E-value=1.4e-07  Score=78.02  Aligned_cols=192  Identities=7%  Similarity=0.010  Sum_probs=153.1

Q ss_pred             HHHHHH--hcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC
Q 036275           46 LFVFIF--SIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLG  123 (271)
Q Consensus        46 ~ll~~~--~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g  123 (271)
                      -+-.+|  ..+.++-++.|++....+ +-++.+|..-.....-.+++++|..=|++.++.... +...|-.+.-+..+.+
T Consensus       365 ~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe-~~~~~iQl~~a~Yr~~  442 (606)
T KOG0547|consen  365 KRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPE-NAYAYIQLCCALYRQH  442 (606)
T ss_pred             HHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChh-hhHHHHHHHHHHHHHH
Confidence            344455  888999999999998887 668899998888888899999999999999887422 5566777777778899


Q ss_pred             CHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHhchhCC-----CCCCHHHH-HHHHHHHHhcCCHHH
Q 036275          124 QFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR-----LKPDVVTW-TSRLAAYSRKKLYRR  197 (271)
Q Consensus       124 ~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g-----~~~~~~~~-~~li~~~~~~g~~~~  197 (271)
                      .+++++..|++.+++ +|..+..|+....++...+++++|.+.|+...+..     +-.+..++ +.-+-.+--.+++..
T Consensus       443 k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~qwk~d~~~  521 (606)
T KOG0547|consen  443 KIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQWKEDINQ  521 (606)
T ss_pred             HHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhhchhhhHHH
Confidence            999999999999987 67778999999999999999999999999876542     11121111 111112224589999


Q ss_pred             HHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHH
Q 036275          198 CLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMH  241 (271)
Q Consensus       198 a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~  241 (271)
                      |..++++..+.. +-....|..|...-.+.|+.++|.++|++-.
T Consensus       522 a~~Ll~KA~e~D-pkce~A~~tlaq~~lQ~~~i~eAielFEksa  564 (606)
T KOG0547|consen  522 AENLLRKAIELD-PKCEQAYETLAQFELQRGKIDEAIELFEKSA  564 (606)
T ss_pred             HHHHHHHHHccC-chHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            999999998865 3456789999999999999999999999864

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.96  E-value=2.2e-08  Score=78.79  Aligned_cols=201  Identities=9%  Similarity=-0.071  Sum_probs=167.8

Q ss_pred             chHHHHHH--hcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 036275           44 PNLFVFIF--SIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGR  121 (271)
Q Consensus        44 y~~ll~~~--~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~  121 (271)
                      |-.|-+.|  ..+++.|+.+|.+-...- |-++.....+.+.+-..++.++|.++|+...+.. +.++....++...|.-
T Consensus       259 fllLskvY~ridQP~~AL~~~~~gld~f-P~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY  336 (478)
T KOG1129|consen  259 FLLLSKVYQRIDQPERALLVIGEGLDSF-PFDVTYLLGQARIHEAMEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFY  336 (478)
T ss_pred             HHHHHHHHHHhccHHHHHHHHhhhhhcC-CchhhhhhhhHHHHHHHHhHHHHHHHHHHHHhcC-Cccceeeeeeeecccc
Confidence            77888888  899999999999887653 5566555667788888899999999999998875 3366677778888889


Q ss_pred             cCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHhchhCCCCCC--HHHHHHHHHHHHhcCCHHHHH
Q 036275          122 LGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPD--VVTWTSRLAAYSRKKLYRRCL  199 (271)
Q Consensus       122 ~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~--~~~~~~li~~~~~~g~~~~a~  199 (271)
                      .++++-|+.++.++.+.|+ .+...|+.+.-+|.-.++++-++-.|++....--.|+  ...|..+-...+..||+..|.
T Consensus       337 ~~~PE~AlryYRRiLqmG~-~speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~  415 (478)
T KOG1129|consen  337 DNNPEMALRYYRRILQMGA-QSPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAK  415 (478)
T ss_pred             CCChHHHHHHHHHHHHhcC-CChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHH
Confidence            9999999999999999985 6788999999999999999999999998776543444  347888888889999999999


Q ss_pred             HHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhcccchh
Q 036275          200 EIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKDMKTAL  248 (271)
Q Consensus       200 ~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~  248 (271)
                      +.|+-.+..+ .-+...++.|.-.-.+.|++++|..++.......+...
T Consensus       416 rcfrlaL~~d-~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~P~m~  463 (478)
T KOG1129|consen  416 RCFRLALTSD-AQHGEALNNLAVLAARSGDILGARSLLNAAKSVMPDMA  463 (478)
T ss_pred             HHHHHHhccC-cchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhCcccc
Confidence            9999988765 44678899988888999999999999998876655443

>PF12854 PPR_1: PPR repeat

Probab=98.94  E-value=1.5e-09  Score=57.08  Aligned_cols=32  Identities=25%  Similarity=0.555  Sum_probs=19.8

Q ss_pred             CCCCCHHHHHHHHHHHHccCCHhHHHHHHHHH
Q 036275          104 GLKPDTFVINSMLNLYGRLGQFEKMEEVLTAM  135 (271)
Q Consensus       104 ~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m  135 (271)
                      |+.||..||++||++|++.|++++|.++|++|
T Consensus         2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M   33 (34)
T PF12854_consen    2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM   33 (34)
T ss_pred             CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence            55566666666666666666666666666655

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=98.91  E-value=4.7e-07  Score=70.92  Aligned_cols=168  Identities=9%  Similarity=0.024  Sum_probs=93.7

Q ss_pred             HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCC-C-CHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChh---hHH
Q 036275           74 MKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLK-P-DTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADIS---TYN  148 (271)
Q Consensus        74 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~-~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~---~~~  148 (271)
                      ...+..+...+...|+++.|...|+++...... | ....+..+..++.+.|++++|...++++.+.. +.+..   ++.
T Consensus        33 ~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~a~~  111 (235)
T TIGR03302        33 AEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLH-PNHPDADYAYY  111 (235)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC-cCCCchHHHHH
Confidence            444445555555555555555555555543211 0 01234445555555555555555555555431 11111   233


Q ss_pred             HHHHHHHcC--------CCHHHHHHHHHhchhCCCCCCHH-H-----------------HHHHHHHHHhcCCHHHHHHHH
Q 036275          149 ILINIYGRG--------GFIEKMEGLFQSLPAKRLKPDVV-T-----------------WTSRLAAYSRKKLYRRCLEIF  202 (271)
Q Consensus       149 ~li~~~~~~--------g~~~~a~~~~~~m~~~g~~~~~~-~-----------------~~~li~~~~~~g~~~~a~~~~  202 (271)
                      .+..++...        |+.++|.+.|+.+...  .|+.. .                 ...+...+.+.|++.+|...+
T Consensus       112 ~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~  189 (235)
T TIGR03302       112 LRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAINRF  189 (235)
T ss_pred             HHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHH
Confidence            333334332        4555555555555443  12211 1                 123445677889999999999


Q ss_pred             HHHHHCC--CCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhcc
Q 036275          203 EEMIDAG--CYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKDM  244 (271)
Q Consensus       203 ~~m~~~~--~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~  244 (271)
                      +...+..  -+.....+..+..++...|+.++|..+++.+..+.
T Consensus       190 ~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~  233 (235)
T TIGR03302       190 ETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANY  233 (235)
T ss_pred             HHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence            8887642  12235677888888999999999999888887654

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.88  E-value=7e-08  Score=77.47  Aligned_cols=147  Identities=13%  Similarity=0.134  Sum_probs=71.2

Q ss_pred             hcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHH----cCCCHH
Q 036275           86 KTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYG----RGGFIE  161 (271)
Q Consensus        86 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~----~~g~~~  161 (271)
                      ..|++++|++++++-      .+.......+..+.+.++++.|.+.++.|.+.  ..|.. ...+..++.    ..+.++
T Consensus       114 ~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~--~eD~~-l~qLa~awv~l~~g~e~~~  184 (290)
T PF04733_consen  114 HEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQI--DEDSI-LTQLAEAWVNLATGGEKYQ  184 (290)
T ss_dssp             CCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCC--SCCHH-HHHHHHHHHHHHHTTTCCC
T ss_pred             HcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcHH-HHHHHHHHHHHHhCchhHH
Confidence            445555555555331      23444445555666666666666666666553  22222 222222222    223456


Q ss_pred             HHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcH-HHHHHHHHHH
Q 036275          162 KMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQI-EQVTTLVRTM  240 (271)
Q Consensus       162 ~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~-~~a~~~~~~~  240 (271)
                      +|.-+|+++... ..+++.+.+.+..++...|++++|.+++.+..+.+ +-+..+...++-+....|+. +.+.+++.++
T Consensus       185 ~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~-~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL  262 (290)
T PF04733_consen  185 DAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKD-PNDPDTLANLIVCSLHLGKPTEAAERYLSQL  262 (290)
T ss_dssp             HHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC--CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHC
T ss_pred             HHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc-cCCHHHHHHHHHHHHHhCCChhHHHHHHHHH
Confidence            666666665443 34455555666666666666666666666554432 22344555555555555555 4455555555


Q ss_pred             Hhc
Q 036275          241 HKD  243 (271)
Q Consensus       241 ~~~  243 (271)
                      ...
T Consensus       263 ~~~  265 (290)
T PF04733_consen  263 KQS  265 (290)
T ss_dssp             HHH
T ss_pred             HHh
Confidence            443

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=98.87  E-value=6.6e-07  Score=76.45  Aligned_cols=196  Identities=18%  Similarity=0.224  Sum_probs=145.8

Q ss_pred             HHHHHH--hcCHHHHHHHHHHHHHc-----C--CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC-----CCC-CCHH
Q 036275           46 LFVFIF--SIYFSDAHAVFEEMKRL-----G--ITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKS-----GLK-PDTF  110 (271)
Q Consensus        46 ~ll~~~--~g~~~~A~~~~~~~~~~-----~--~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-----~~~-~~~~  110 (271)
                      .+-..|  .+++++|..+|.++...     |  .+.-..+++.|..+|.+.|++++|...+++..+.     |.. |.+.
T Consensus       246 ~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~  325 (508)
T KOG1840|consen  246 ILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVA  325 (508)
T ss_pred             HHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHH
Confidence            344455  89999999999988543     2  2334566778888999999999998888766432     222 2222


Q ss_pred             -HHHHHHHHHHccCCHhHHHHHHHHHHhC---CCCC----ChhhHHHHHHHHHcCCCHHHHHHHHHhchhC----CC--C
Q 036275          111 -VINSMLNLYGRLGQFEKMEEVLTAMEKG---SYAA----DISTYNILINIYGRGGFIEKMEGLFQSLPAK----RL--K  176 (271)
Q Consensus       111 -~~~~li~~~~~~g~~~~a~~~~~~m~~~---~~~~----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~--~  176 (271)
                       .++.+...+...+++++|..++....+.   -+.+    -..+++.|...|...|++++|++++++....    +-  .
T Consensus       326 ~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~  405 (508)
T KOG1840|consen  326 AQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKD  405 (508)
T ss_pred             HHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcC
Confidence             3677888899999999999998866532   1112    2468999999999999999999999987642    11  2


Q ss_pred             CC-HHHHHHHHHHHHhcCCHHHHHHHHHHHH----HCCC-CCC-HHHHHHHHHHHhccCcHHHHHHHHHHHH
Q 036275          177 PD-VVTWTSRLAAYSRKKLYRRCLEIFEEMI----DAGC-YPD-GGTAKVLISACSSEDQIEQVTTLVRTMH  241 (271)
Q Consensus       177 ~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~----~~~~-~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~  241 (271)
                      +. -..++.|...|.+.++..+|.++|.+-.    ..|. .|+ ..+|..|..+|...|+++.|.++.+.+.
T Consensus       406 ~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~  477 (508)
T KOG1840|consen  406 YGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL  477 (508)
T ss_pred             hhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence            22 3467888899999999999999887643    3332 233 4689999999999999999999998875

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.86  E-value=6.4e-08  Score=77.70  Aligned_cols=210  Identities=12%  Similarity=0.112  Sum_probs=140.1

Q ss_pred             HHHHHH--hcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHH-HHHHHHHcc
Q 036275           46 LFVFIF--SIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVIN-SMLNLYGRL  122 (271)
Q Consensus        46 ~ll~~~--~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~-~li~~~~~~  122 (271)
                      .+.++|  .|+++.++   .++.... .|.......+...+....+-+.++.-+++.......++..++. .....+...
T Consensus        40 ~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~~~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~  115 (290)
T PF04733_consen   40 YQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSSPSDKESALEELKELLADQAGESNEIVQLLAATILFHE  115 (290)
T ss_dssp             HHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCTSTTHHCHHHHHHHCCCTS---CHHHHHHHHHHHHCCC
T ss_pred             HHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhCccchHHHHHHHHHHHHhccccccHHHHHHHHHHHHHc
Confidence            445566  78877544   4444444 6777777666555554455666666655554444333333333 334556778


Q ss_pred             CCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHH----hcCCHHHH
Q 036275          123 GQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYS----RKKLYRRC  198 (271)
Q Consensus       123 g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~----~~g~~~~a  198 (271)
                      |++++|++++...      .+.......+..|.+.++++.|.+.++.|.+..   +..+...+..++.    ..+.+.+|
T Consensus       116 ~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~---eD~~l~qLa~awv~l~~g~e~~~~A  186 (290)
T PF04733_consen  116 GDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQID---EDSILTQLAEAWVNLATGGEKYQDA  186 (290)
T ss_dssp             CHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCS---CCHHHHHHHHHHHHHHHTTTCCCHH
T ss_pred             CCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcC---CcHHHHHHHHHHHHHHhCchhHHHH
Confidence            9999999887542      356777888999999999999999999998753   3345555555544    23468999


Q ss_pred             HHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhcccchhHHHHHH---Hhhccccccchhhhh
Q 036275          199 LEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKDMKTALPIYFNL---YGEKGVARSNLGQYI  269 (271)
Q Consensus       199 ~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~---~~~~G~~~~a~~~~~  269 (271)
                      ..+|+++.+. ..++..+.+.+..+....|++++|.+++.+..+.++....++.+.   ....|+..++.++|+
T Consensus       187 ~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l  259 (290)
T PF04733_consen  187 FYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYL  259 (290)
T ss_dssp             HHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHH
T ss_pred             HHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHH
Confidence            9999998765 568888999999999999999999999999887777666666554   566787777776665

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=98.82  E-value=4.3e-07  Score=80.75  Aligned_cols=220  Identities=11%  Similarity=0.134  Sum_probs=171.4

Q ss_pred             hHHHHHHHhhcCchHHHHHH---------hcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 036275           32 FMLINFLLLQHTPNLFVFIF---------SIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHK  102 (271)
Q Consensus        32 ~~~~~f~~~~~~y~~ll~~~---------~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~  102 (271)
                      .|.+.+..+.+.|-..|.+|         .+...+|...+.+....+ ..++..+..+...+.+...+..|.+-|..+.+
T Consensus       514 ~A~e~Yk~Ilkehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d-~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~  592 (1018)
T KOG2002|consen  514 VAEEMYKSILKEHPGYIDAYLRLGCMARDKNNLYEASLLLKDALNID-SSNPNARSLLGNLHLKKSEWKPAKKKFETILK  592 (1018)
T ss_pred             HHHHHHHHHHHHCchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcc-cCCcHHHHHHHHHHHhhhhhcccccHHHHHHh
Confidence            46666777777666666666         367788999998887765 45677777788888888889888888877766


Q ss_pred             CC-CCCCHHHHHHHHHHHHc------------cCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHh
Q 036275          103 SG-LKPDTFVINSMLNLYGR------------LGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQS  169 (271)
Q Consensus       103 ~~-~~~~~~~~~~li~~~~~------------~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~  169 (271)
                      .- ..+|+...-+|.+.|.+            .+..++|+++|.+..+.. |.+...-|-+.-.++..|++.+|..+|.+
T Consensus       593 ~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~d-pkN~yAANGIgiVLA~kg~~~~A~dIFsq  671 (1018)
T KOG2002|consen  593 KTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRND-PKNMYAANGIGIVLAEKGRFSEARDIFSQ  671 (1018)
T ss_pred             hhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcC-cchhhhccchhhhhhhccCchHHHHHHHH
Confidence            52 23566666666665553            245678999999888873 66888889999999999999999999999


Q ss_pred             chhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhcccchh
Q 036275          170 LPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMID-AGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKDMKTAL  248 (271)
Q Consensus       170 m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~  248 (271)
                      +++... -...+|-.+...|...|++..|.++|+.... ..-.-+..+...|.+++...|.+.+|.+.........+..+
T Consensus       672 VrEa~~-~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~  750 (1018)
T KOG2002|consen  672 VREATS-DFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNT  750 (1018)
T ss_pred             HHHHHh-hCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccc
Confidence            998743 1345799999999999999999999998664 44455788899999999999999999999888877766666


Q ss_pred             HHHHHH
Q 036275          249 PIYFNL  254 (271)
Q Consensus       249 ~~~~~~  254 (271)
                      ...++.
T Consensus       751 ~v~FN~  756 (1018)
T KOG2002|consen  751 SVKFNL  756 (1018)
T ss_pred             hHHhHH
Confidence            555554

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=98.82  E-value=4.1e-06  Score=64.23  Aligned_cols=165  Identities=10%  Similarity=0.032  Sum_probs=134.3

Q ss_pred             CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChhhHHHHHH
Q 036275           73 TMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILIN  152 (271)
Q Consensus        73 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~  152 (271)
                      |... ..+-..+...|+-+....+..+..... .-|....+..+....+.|++.+|...+.+..... ++|...|+.+.-
T Consensus        66 d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~-~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lga  142 (257)
T COG5010          66 DLSI-AKLATALYLRGDADSSLAVLQKSAIAY-PKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGA  142 (257)
T ss_pred             hHHH-HHHHHHHHhcccccchHHHHhhhhccC-cccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHH
Confidence            4455 566777778888888888877655443 3355667778999999999999999999998764 788999999999


Q ss_pred             HHHcCCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHH
Q 036275          153 IYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQ  232 (271)
Q Consensus       153 ~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~  232 (271)
                      +|.+.|+.++|..-|.+..+.. .-++..++.+...+.-.|+.+.|..++......+ .-|...-..+..+....|++++
T Consensus       143 aldq~Gr~~~Ar~ay~qAl~L~-~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~-~ad~~v~~NLAl~~~~~g~~~~  220 (257)
T COG5010         143 ALDQLGRFDEARRAYRQALELA-PNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSP-AADSRVRQNLALVVGLQGDFRE  220 (257)
T ss_pred             HHHHccChhHHHHHHHHHHHhc-cCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC-CCchHHHHHHHHHHhhcCChHH
Confidence            9999999999999999988763 2256788999999999999999999999988775 3477777888888899999999


Q ss_pred             HHHHHHHHHh
Q 036275          233 VTTLVRTMHK  242 (271)
Q Consensus       233 a~~~~~~~~~  242 (271)
                      |..+...-..
T Consensus       221 A~~i~~~e~~  230 (257)
T COG5010         221 AEDIAVQELL  230 (257)
T ss_pred             HHhhcccccc
Confidence            9998775543

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=98.81  E-value=1.5e-06  Score=68.05  Aligned_cols=163  Identities=10%  Similarity=-0.001  Sum_probs=120.9

Q ss_pred             chHHHHHH-hcCHHHHHHHHHHHHHcCCCCCH---HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH--HHHHHHHH
Q 036275           44 PNLFVFIF-SIYFSDAHAVFEEMKRLGITPTM---KSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDT--FVINSMLN  117 (271)
Q Consensus        44 y~~ll~~~-~g~~~~A~~~~~~~~~~~~~~~~---~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~--~~~~~li~  117 (271)
                      |+.....+ .|++++|...|+++.+.. +.+.   ..+..+..++.+.|++++|...++++.+.......  .++..+..
T Consensus        37 ~~~g~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~g~  115 (235)
T TIGR03302        37 YEEAKEALDSGDYTEAIKYFEALESRY-PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYYLRGL  115 (235)
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHHHHHH
Confidence            44444445 999999999999998764 3232   46778889999999999999999999876432111  24445555


Q ss_pred             HHHcc--------CCHhHHHHHHHHHHhCCCCCChhhH-----------------HHHHHHHHcCCCHHHHHHHHHhchh
Q 036275          118 LYGRL--------GQFEKMEEVLTAMEKGSYAADISTY-----------------NILINIYGRGGFIEKMEGLFQSLPA  172 (271)
Q Consensus       118 ~~~~~--------g~~~~a~~~~~~m~~~~~~~~~~~~-----------------~~li~~~~~~g~~~~a~~~~~~m~~  172 (271)
                      ++...        |+.++|.+.++.+.+.. +.+...+                 ..+...+.+.|++++|...+++...
T Consensus       116 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~  194 (235)
T TIGR03302       116 SNYNQIDRVDRDQTAAREAFEAFQELIRRY-PNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAINRFETVVE  194 (235)
T ss_pred             HHHHhcccccCCHHHHHHHHHHHHHHHHHC-CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence            55544        78899999999998762 2222222                 1345678899999999999999876


Q ss_pred             CCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 036275          173 KRL--KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDA  208 (271)
Q Consensus       173 ~g~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~  208 (271)
                      ...  +.....+..+..++...|++++|...++.+...
T Consensus       195 ~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~  232 (235)
T TIGR03302       195 NYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN  232 (235)
T ss_pred             HCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            521  223578999999999999999999999888764

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=98.75  E-value=9.6e-06  Score=67.57  Aligned_cols=152  Identities=14%  Similarity=0.134  Sum_probs=109.3

Q ss_pred             hcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHccCCHh
Q 036275           52 SIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSK----TGNVAKCEGVINQMHKSGLKPDT-FVINSMLNLYGRLGQFE  126 (271)
Q Consensus        52 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~~~~~~~-~~~~~li~~~~~~g~~~  126 (271)
                      .|++++|.+.+++..+.. |.+...+.. ...+..    .+..+.+.+.+..  .....|+. .....+...+...|+++
T Consensus        56 ~g~~~~A~~~~~~~l~~~-P~~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~a~~~~~~G~~~  131 (355)
T cd05804          56 AGDLPKALALLEQLLDDY-PRDLLALKL-HLGAFGLGDFSGMRDHVARVLPL--WAPENPDYWYLLGMLAFGLEEAGQYD  131 (355)
T ss_pred             cCCHHHHHHHHHHHHHHC-CCcHHHHHH-hHHHHHhcccccCchhHHHHHhc--cCcCCCCcHHHHHHHHHHHHHcCCHH
Confidence            999999999999988764 555555553 222222    3445555555544  11223333 34456667888999999


Q ss_pred             HHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHhchhCCC-CCCH--HHHHHHHHHHHhcCCHHHHHHHHH
Q 036275          127 KMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL-KPDV--VTWTSRLAAYSRKKLYRRCLEIFE  203 (271)
Q Consensus       127 ~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~-~~~~--~~~~~li~~~~~~g~~~~a~~~~~  203 (271)
                      +|...+++..+.. +.+...+..+..++...|++++|...+++...... .|+.  ..|..+...+...|++++|..+++
T Consensus       132 ~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~  210 (355)
T cd05804         132 RAEEAARRALELN-PDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYD  210 (355)
T ss_pred             HHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence            9999999998874 55677888899999999999999999998776422 1222  345678888999999999999999


Q ss_pred             HHHHC
Q 036275          204 EMIDA  208 (271)
Q Consensus       204 ~m~~~  208 (271)
                      +....
T Consensus       211 ~~~~~  215 (355)
T cd05804         211 THIAP  215 (355)
T ss_pred             HHhcc
Confidence            98643

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.72  E-value=3.6e-06  Score=70.96  Aligned_cols=197  Identities=9%  Similarity=-0.048  Sum_probs=154.4

Q ss_pred             chHHHHHH--hcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 036275           44 PNLFVFIF--SIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGR  121 (271)
Q Consensus        44 y~~ll~~~--~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~  121 (271)
                      |-++--.|  .|+.++|.+.|.+....+ +.=...|-.....|+-.|..+.|+..|...-+.=.. ...-+--+.--|.+
T Consensus       315 W~aVg~YYl~i~k~seARry~SKat~lD-~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G-~hlP~LYlgmey~~  392 (611)
T KOG1173|consen  315 WFAVGCYYLMIGKYSEARRYFSKATTLD-PTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPG-CHLPSLYLGMEYMR  392 (611)
T ss_pred             hhhHHHHHHHhcCcHHHHHHHHHHhhcC-ccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccC-CcchHHHHHHHHHH
Confidence            66666556  999999999999887665 234567888999999999999999998776654110 11112234455778


Q ss_pred             cCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHhchhC--C----CCCCHHHHHHHHHHHHhcCCH
Q 036275          122 LGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAK--R----LKPDVVTWTSRLAAYSRKKLY  195 (271)
Q Consensus       122 ~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--g----~~~~~~~~~~li~~~~~~g~~  195 (271)
                      .++.+.|.++|.+.... .|.|+...+-+.-.....+.+.+|...|+.....  .    ......+++.|..+|.+.+.+
T Consensus       393 t~n~kLAe~Ff~~A~ai-~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~  471 (611)
T KOG1173|consen  393 TNNLKLAEKFFKQALAI-APSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKY  471 (611)
T ss_pred             hccHHHHHHHHHHHHhc-CCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhH
Confidence            99999999999988876 3567888888888888899999999999986621  0    112445789999999999999


Q ss_pred             HHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhcc
Q 036275          196 RRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKDM  244 (271)
Q Consensus       196 ~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~  244 (271)
                      ++|...++..+... +-|..++.++.-.+...|+++.|.+.|.+..--.
T Consensus       472 ~eAI~~~q~aL~l~-~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~  519 (611)
T KOG1173|consen  472 EEAIDYYQKALLLS-PKDASTHASIGYIYHLLGNLDKAIDHFHKALALK  519 (611)
T ss_pred             HHHHHHHHHHHHcC-CCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcC
Confidence            99999999988764 6688899999999999999999999999876443

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=98.69  E-value=2.7e-06  Score=64.58  Aligned_cols=155  Identities=8%  Similarity=0.126  Sum_probs=115.2

Q ss_pred             hcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHhHHHHH
Q 036275           52 SIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEV  131 (271)
Q Consensus        52 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~  131 (271)
                      .|+++.+......+.    .|.        ..+...++.+++...+++..+.. +.+...|..+...|...|++++|...
T Consensus        29 ~g~~~~v~~~~~~~~----~~~--------~~~~~~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~~a   95 (198)
T PRK10370         29 SPKWQAVRAEYQRLA----DPL--------HQFASQQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNALLA   95 (198)
T ss_pred             cchHHHHHHHHHHHh----Ccc--------ccccCchhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence            888888654442221    111        01223666788888887777765 44788899999999999999999999


Q ss_pred             HHHHHhCCCCCChhhHHHHHHHH-HcCCC--HHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 036275          132 LTAMEKGSYAADISTYNILINIY-GRGGF--IEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDA  208 (271)
Q Consensus       132 ~~~m~~~~~~~~~~~~~~li~~~-~~~g~--~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~  208 (271)
                      +++..+.. +.+...+..+..++ ...|+  .++|.+++++..+.+. -+..++..+...+.+.|++++|...|+++.+.
T Consensus        96 ~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP-~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l  173 (198)
T PRK10370         96 YRQALQLR-GENAELYAALATVLYYQAGQHMTPQTREMIDKALALDA-NEVTALMLLASDAFMQADYAQAIELWQKVLDL  173 (198)
T ss_pred             HHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCC-CChhHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            99998874 55778888888864 67777  5999999999988742 25678888889999999999999999999886


Q ss_pred             CCCCCHHHHHHHHHH
Q 036275          209 GCYPDGGTAKVLISA  223 (271)
Q Consensus       209 ~~~p~~~~~~~l~~~  223 (271)
                      . +|+..-+..+ ++
T Consensus       174 ~-~~~~~r~~~i-~~  186 (198)
T PRK10370        174 N-SPRVNRTQLV-ES  186 (198)
T ss_pred             C-CCCccHHHHH-HH
Confidence            4 5565544433 54

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=98.67  E-value=8.7e-06  Score=61.84  Aligned_cols=154  Identities=8%  Similarity=0.038  Sum_probs=117.9

Q ss_pred             HHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCC
Q 036275           80 LLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGF  159 (271)
Q Consensus        80 li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~  159 (271)
                      -+..|...|+++.+....+.+..    |. .       .+...++.+++...++...+.. +.+...|..+...|...|+
T Consensus        22 ~~~~Y~~~g~~~~v~~~~~~~~~----~~-~-------~~~~~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~   88 (198)
T PRK10370         22 CVGSYLLSPKWQAVRAEYQRLAD----PL-H-------QFASQQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRND   88 (198)
T ss_pred             HHHHHHHcchHHHHHHHHHHHhC----cc-c-------cccCchhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCC
Confidence            34567788998887555433321    11 0       1223667788888888877764 6789999999999999999


Q ss_pred             HHHHHHHHHhchhCCCCCCHHHHHHHHHHH-HhcCC--HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHH
Q 036275          160 IEKMEGLFQSLPAKRLKPDVVTWTSRLAAY-SRKKL--YRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL  236 (271)
Q Consensus       160 ~~~a~~~~~~m~~~g~~~~~~~~~~li~~~-~~~g~--~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~  236 (271)
                      +++|...|++..... +-+...+..+..++ ...|+  .++|.+++++..+.+ +-+...+..+...+...|++++|...
T Consensus        89 ~~~A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~d-P~~~~al~~LA~~~~~~g~~~~Ai~~  166 (198)
T PRK10370         89 YDNALLAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQTREMIDKALALD-ANEVTALMLLASDAFMQADYAQAIEL  166 (198)
T ss_pred             HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHcCCHHHHHHH
Confidence            999999999988864 22567788877764 67777  599999999999875 44677888888889999999999999


Q ss_pred             HHHHHhcccchh
Q 036275          237 VRTMHKDMKTAL  248 (271)
Q Consensus       237 ~~~~~~~~~~~~  248 (271)
                      ++++.+..++..
T Consensus       167 ~~~aL~l~~~~~  178 (198)
T PRK10370        167 WQKVLDLNSPRV  178 (198)
T ss_pred             HHHHHhhCCCCc
Confidence            999987665543

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=98.67  E-value=2.3e-05  Score=67.52  Aligned_cols=229  Identities=13%  Similarity=0.110  Sum_probs=158.5

Q ss_pred             HHHHHHhhcC---chHHHHHH--hcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC
Q 036275           34 LINFLLLQHT---PNLFVFIF--SIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPD  108 (271)
Q Consensus        34 ~~~f~~~~~~---y~~ll~~~--~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~  108 (271)
                      ...|+-.|++   |-+.+..-  +.++++|..+|.+....  .|+...|.--+..-.-.++.++|.+++++..+.  .|+
T Consensus       608 ~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~--fp~  683 (913)
T KOG0495|consen  608 DQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEALRLLEEALKS--FPD  683 (913)
T ss_pred             HHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh--CCc
Confidence            3456666665   33333333  77777787777776654  456666666666666667777777777777665  344


Q ss_pred             H-HHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHhchhCCCCCCHHHHHHHHH
Q 036275          109 T-FVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLA  187 (271)
Q Consensus       109 ~-~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~  187 (271)
                      - ..|-.+...+-+.++.+.|.+.|..-.+. .|-.+..|-.|...=-+.|.+-.|..++++.+.++ +-+...|-..|+
T Consensus       684 f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~~ipLWllLakleEk~~~~~rAR~ildrarlkN-Pk~~~lwle~Ir  761 (913)
T KOG0495|consen  684 FHKLWLMLGQIEEQMENIEMAREAYLQGTKK-CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN-PKNALLWLESIR  761 (913)
T ss_pred             hHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC-CCcchhHHHHHH
Confidence            3 34556666666777777777766555443 34456677777777778888888888888887764 236778999999


Q ss_pred             HHHhcCCHHHHHHHHHHHHHC-----------------------------CCCCCHHHHHHHHHHHhccCcHHHHHHHHH
Q 036275          188 AYSRKKLYRRCLEIFEEMIDA-----------------------------GCYPDGGTAKVLISACSSEDQIEQVTTLVR  238 (271)
Q Consensus       188 ~~~~~g~~~~a~~~~~~m~~~-----------------------------~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~  238 (271)
                      .=.+.|+.+.|..++.+.++.                             .+..|.+....+...+-...++++|.+.|.
T Consensus       762 ~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DALkkce~dphVllaia~lfw~e~k~~kar~Wf~  841 (913)
T KOG0495|consen  762 MELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVLLAIAKLFWSEKKIEKAREWFE  841 (913)
T ss_pred             HHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999888777665542                             123566667777777888889999999999


Q ss_pred             HHHhccc---chhHHHHHHHhhccccccchhhh
Q 036275          239 TMHKDMK---TALPIYFNLYGEKGVARSNLGQY  268 (271)
Q Consensus       239 ~~~~~~~---~~~~~~~~~~~~~G~~~~a~~~~  268 (271)
                      +..+.++   ..+..++..+..+|.-++-.+.|
T Consensus       842 Ravk~d~d~GD~wa~fykfel~hG~eed~kev~  874 (913)
T KOG0495|consen  842 RAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVL  874 (913)
T ss_pred             HHHccCCccchHHHHHHHHHHHhCCHHHHHHHH
Confidence            9887654   45666778888888666655544

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=98.66  E-value=7.2e-06  Score=68.13  Aligned_cols=143  Identities=7%  Similarity=0.011  Sum_probs=85.2

Q ss_pred             chHHHHHH-hcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHc
Q 036275           44 PNLFVFIF-SIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPD-TFVINSMLNLYGR  121 (271)
Q Consensus        44 y~~ll~~~-~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~li~~~~~  121 (271)
                      |..-+..| .|++++|+..++.+.+.. |-|+..+......+.+.++..+|.+.++++...  .|+ ....-.+..++.+
T Consensus       310 YG~A~~~~~~~~~d~A~~~l~~L~~~~-P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all~  386 (484)
T COG4783         310 YGRALQTYLAGQYDEALKLLQPLIAAQ-PDNPYYLELAGDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALLK  386 (484)
T ss_pred             HHHHHHHHHhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHh
Confidence            55666666 666666666666665542 445555555566666666666666666666665  333 3444455666666


Q ss_pred             cCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 036275          122 LGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEI  201 (271)
Q Consensus       122 ~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~  201 (271)
                      .|++.+|+.+++..... .+.|+..|..|..+|...|+..++.....+.                  +...|+++.|...
T Consensus       387 ~g~~~eai~~L~~~~~~-~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~------------------~~~~G~~~~A~~~  447 (484)
T COG4783         387 GGKPQEAIRILNRYLFN-DPEDPNGWDLLAQAYAELGNRAEALLARAEG------------------YALAGRLEQAIIF  447 (484)
T ss_pred             cCChHHHHHHHHHHhhc-CCCCchHHHHHHHHHHHhCchHHHHHHHHHH------------------HHhCCCHHHHHHH
Confidence            66666666666666555 2556666666666666666666555444332                  3445666666666


Q ss_pred             HHHHHHC
Q 036275          202 FEEMIDA  208 (271)
Q Consensus       202 ~~~m~~~  208 (271)
                      +....+.
T Consensus       448 l~~A~~~  454 (484)
T COG4783         448 LMRASQQ  454 (484)
T ss_pred             HHHHHHh
Confidence            6555543

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=98.65  E-value=3.4e-06  Score=60.66  Aligned_cols=95  Identities=7%  Similarity=-0.168  Sum_probs=62.5

Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHc
Q 036275           77 HMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGR  156 (271)
Q Consensus        77 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~  156 (271)
                      +..+...+...|++++|...|++..... +.+...|..+..++...|++++|...|+...... +.+...+..+..++..
T Consensus        27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~-p~~~~a~~~lg~~l~~  104 (144)
T PRK15359         27 VYASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD-ASHPEPVYQTGVCLKM  104 (144)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHH
Confidence            4445566666777777777777766654 2355666666777777777777777777776653 4456666667777777


Q ss_pred             CCCHHHHHHHHHhchhC
Q 036275          157 GGFIEKMEGLFQSLPAK  173 (271)
Q Consensus       157 ~g~~~~a~~~~~~m~~~  173 (271)
                      .|++++|...|+.....
T Consensus       105 ~g~~~eAi~~~~~Al~~  121 (144)
T PRK15359        105 MGEPGLAREAFQTAIKM  121 (144)
T ss_pred             cCCHHHHHHHHHHHHHh
Confidence            77777777777766654

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=98.63  E-value=2.3e-05  Score=65.26  Aligned_cols=189  Identities=10%  Similarity=-0.065  Sum_probs=128.0

Q ss_pred             hcCHHHHHHHHHHHHHcCC-CCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH----ccCCH
Q 036275           52 SIYFSDAHAVFEEMKRLGI-TPTM-KSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYG----RLGQF  125 (271)
Q Consensus        52 ~g~~~~A~~~~~~~~~~~~-~~~~-~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~----~~g~~  125 (271)
                      .|+.+.+.+.+....+... .++. .........+...|++++|.+.+++..+.. +.+...+.. ...+.    ..+..
T Consensus        19 ~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~-~~~~~~~~~~~~~~   96 (355)
T cd05804          19 GGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDY-PRDLLALKL-HLGAFGLGDFSGMR   96 (355)
T ss_pred             cCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHH-hHHHHHhcccccCc
Confidence            6778887777777655431 1222 222233445667899999999999988773 224444442 22222    34555


Q ss_pred             hHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 036275          126 EKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEM  205 (271)
Q Consensus       126 ~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m  205 (271)
                      +.+.+.++.. ....+........+...+...|++++|.+.+++..+.. +.+...+..+...+...|++++|...+++.
T Consensus        97 ~~~~~~l~~~-~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g~~~eA~~~l~~~  174 (355)
T cd05804          97 DHVARVLPLW-APENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQGRFKEGIAFMESW  174 (355)
T ss_pred             hhHHHHHhcc-CcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHhh
Confidence            5555555541 11222234455567778999999999999999998863 334567888889999999999999999998


Q ss_pred             HHCCC-CCCH--HHHHHHHHHHhccCcHHHHHHHHHHHHhcc
Q 036275          206 IDAGC-YPDG--GTAKVLISACSSEDQIEQVTTLVRTMHKDM  244 (271)
Q Consensus       206 ~~~~~-~p~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~  244 (271)
                      ....- .|+.  ..|..+...+...|+.++|..++++.....
T Consensus       175 l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~  216 (355)
T cd05804         175 RDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPS  216 (355)
T ss_pred             hhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccc
Confidence            76421 2333  345577888999999999999999986443

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.63  E-value=1.8e-05  Score=66.87  Aligned_cols=211  Identities=10%  Similarity=0.057  Sum_probs=132.0

Q ss_pred             hcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHhHHHHH
Q 036275           52 SIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEV  131 (271)
Q Consensus        52 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~  131 (271)
                      .+++.+..++++...+.. |+....+..=|.++.+.|+..+-+.+=.++.+.- +-...+|-++.-.|...|+..+|.++
T Consensus       257 ~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y-P~~a~sW~aVg~YYl~i~k~seARry  334 (611)
T KOG1173|consen  257 GCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY-PSKALSWFAVGCYYLMIGKYSEARRY  334 (611)
T ss_pred             cChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCCcchhhHHHHHHHhcCcHHHHHH
Confidence            666666666666666554 5555556555666666666666666666666552 22445566666666666666666666


Q ss_pred             HHHHHhCCCCCC-hhhHHHHHHHHHcC----------------------------------CCHHHHHHHHHhchhCCCC
Q 036275          132 LTAMEKGSYAAD-ISTYNILINIYGRG----------------------------------GFIEKMEGLFQSLPAKRLK  176 (271)
Q Consensus       132 ~~~m~~~~~~~~-~~~~~~li~~~~~~----------------------------------g~~~~a~~~~~~m~~~g~~  176 (271)
                      |.....-  .|+ ...|-....+|+-.                                  ++.+-|.+.|.+....  .
T Consensus       335 ~SKat~l--D~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai--~  410 (611)
T KOG1173|consen  335 FSKATTL--DPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLAEKFFKQALAI--A  410 (611)
T ss_pred             HHHHhhc--CccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHHHHHHHHHHHhc--C
Confidence            6655432  121 23444444445444                                  4455555555544432  3


Q ss_pred             C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC------CCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhcccchhH
Q 036275          177 P-DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDA------GCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKDMKTALP  249 (271)
Q Consensus       177 ~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~------~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~  249 (271)
                      | |+...+-+.-.....+.+.+|...|+..++.      ....-..+++.|..++.+.+.+++|...+++...-.+..+.
T Consensus       411 P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~  490 (611)
T KOG1173|consen  411 PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDAS  490 (611)
T ss_pred             CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCchh
Confidence            3 4455666655556678888888888876521      11124456888888999999999999999988766555444


Q ss_pred             H---HHHHHhhccccccchhhh
Q 036275          250 I---YFNLYGEKGVARSNLGQY  268 (271)
Q Consensus       250 ~---~~~~~~~~G~~~~a~~~~  268 (271)
                      .   +--.|...|+++.|++.|
T Consensus       491 ~~asig~iy~llgnld~Aid~f  512 (611)
T KOG1173|consen  491 THASIGYIYHLLGNLDKAIDHF  512 (611)
T ss_pred             HHHHHHHHHHHhcChHHHHHHH
Confidence            4   445588899999998876

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=98.62  E-value=3.1e-06  Score=60.12  Aligned_cols=97  Identities=8%  Similarity=-0.049  Sum_probs=48.4

Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHH
Q 036275           75 KSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIY  154 (271)
Q Consensus        75 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~  154 (271)
                      .....+...+...|++++|.+.++++...+ +.+...+..+...+...|++++|..+++...+.+ +.+...+..+...+
T Consensus        18 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~   95 (135)
T TIGR02552        18 EQIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAAECL   95 (135)
T ss_pred             HHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHHHH
Confidence            334444445555555555555555554443 2244444555555555555555555555554442 33344444455555


Q ss_pred             HcCCCHHHHHHHHHhchhC
Q 036275          155 GRGGFIEKMEGLFQSLPAK  173 (271)
Q Consensus       155 ~~~g~~~~a~~~~~~m~~~  173 (271)
                      ...|++++|.+.|+...+.
T Consensus        96 ~~~g~~~~A~~~~~~al~~  114 (135)
T TIGR02552        96 LALGEPESALKALDLAIEI  114 (135)
T ss_pred             HHcCCHHHHHHHHHHHHHh
Confidence            5555555555555554443

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>PLN02789 farnesyltranstransferase

Probab=98.62  E-value=4.1e-05  Score=62.48  Aligned_cols=210  Identities=11%  Similarity=0.056  Sum_probs=150.6

Q ss_pred             chHHHHHH--hcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC-ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 036275           44 PNLFVFIF--SIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTG-NVAKCEGVINQMHKSGLKPDTFVINSMLNLYG  120 (271)
Q Consensus        44 y~~ll~~~--~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~-~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~  120 (271)
                      ++.+-..+  .++.++|+.+.+++.+.+ |-+..+|+.--.++...| ++++++..++++.+...+ +..+|+..-..+.
T Consensus        40 ~~~~ra~l~~~e~serAL~lt~~aI~ln-P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npk-nyqaW~~R~~~l~  117 (320)
T PLN02789         40 MDYFRAVYASDERSPRALDLTADVIRLN-PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPK-NYQIWHHRRWLAE  117 (320)
T ss_pred             HHHHHHHHHcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCc-chHHhHHHHHHHH
Confidence            34444445  789999999999999876 556777877777777777 579999999999987543 5556766555555


Q ss_pred             ccCCH--hHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhc---CCH
Q 036275          121 RLGQF--EKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRK---KLY  195 (271)
Q Consensus       121 ~~g~~--~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~---g~~  195 (271)
                      +.|+.  +++..+++.+.+.. +-+..+|+...-++...|+++++++.++++.+.+.. |...|+.....+.+.   |..
T Consensus       118 ~l~~~~~~~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~l~~~  195 (320)
T PLN02789        118 KLGPDAANKELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSPLLGGL  195 (320)
T ss_pred             HcCchhhHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhccccccc
Confidence            66653  67888888888764 567889999999999999999999999999887543 566777776665554   222


Q ss_pred             ----HHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc----CcHHHHHHHHHHHHhcccchh---HHHHHHHhhc
Q 036275          196 ----RRCLEIFEEMIDAGCYPDGGTAKVLISACSSE----DQIEQVTTLVRTMHKDMKTAL---PIYFNLYGEK  258 (271)
Q Consensus       196 ----~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~----g~~~~a~~~~~~~~~~~~~~~---~~~~~~~~~~  258 (271)
                          ++............ +-|...|..+...+...    +...+|...+.+..+.++...   ..+.++|...
T Consensus       196 ~~~~e~el~y~~~aI~~~-P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~  268 (320)
T PLN02789        196 EAMRDSELKYTIDAILAN-PRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCEG  268 (320)
T ss_pred             cccHHHHHHHHHHHHHhC-CCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHHhh
Confidence                45666666666653 44667788777777662    344568888888766554433   3467777753

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=98.62  E-value=5.4e-06  Score=63.56  Aligned_cols=152  Identities=13%  Similarity=0.014  Sum_probs=126.5

Q ss_pred             hcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHhHHHHH
Q 036275           52 SIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEV  131 (271)
Q Consensus        52 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~  131 (271)
                      .|+-+.+..+........ +-|....+..+....+.|++..|+..+++..... ++|..+|+.+.-+|.+.|++++|..-
T Consensus        79 ~G~a~~~l~~~~~~~~~~-~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq~Gr~~~Ar~a  156 (257)
T COG5010          79 RGDADSSLAVLQKSAIAY-PKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQLGRFDEARRA  156 (257)
T ss_pred             cccccchHHHHhhhhccC-cccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHHccChhHHHHH
Confidence            677777777666654332 4466677779999999999999999999998765 67899999999999999999999999


Q ss_pred             HHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 036275          132 LTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMID  207 (271)
Q Consensus       132 ~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  207 (271)
                      |.+..+-. +-+....+.+.-.+.-.|+.+.|..++......+. -|...-..+.......|++++|..+...-+.
T Consensus       157 y~qAl~L~-~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~-ad~~v~~NLAl~~~~~g~~~~A~~i~~~e~~  230 (257)
T COG5010         157 YRQALELA-PNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPA-ADSRVRQNLALVVGLQGDFREAEDIAVQELL  230 (257)
T ss_pred             HHHHHHhc-cCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCC-CchHHHHHHHHHHhhcCChHHHHhhcccccc
Confidence            99988862 44677889999999999999999999999987743 3667788888888999999999998876544

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=98.61  E-value=3e-05  Score=66.83  Aligned_cols=190  Identities=11%  Similarity=0.026  Sum_probs=125.9

Q ss_pred             hcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHhHHHHH
Q 036275           52 SIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEV  131 (271)
Q Consensus        52 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~  131 (271)
                      .|++..|..++....+.+ +.+...|-.-+..-.....++.|..+|.+....  .|+...|..-+..-.-.++.++|.++
T Consensus       597 agdv~~ar~il~~af~~~-pnseeiwlaavKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~rl  673 (913)
T KOG0495|consen  597 AGDVPAARVILDQAFEAN-PNSEEIWLAAVKLEFENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEALRL  673 (913)
T ss_pred             cCCcHHHHHHHHHHHHhC-CCcHHHHHHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHH
Confidence            677777777777766654 446666766677777777777777777666654  45666665555555666777777777


Q ss_pred             HHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 036275          132 LTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCY  211 (271)
Q Consensus       132 ~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~  211 (271)
                      +++..+. ++.-...|-.+...+-+.++++.|.+.|..=.+. ++-....|-.|.+.=-+.|.+-.|..++++.+-.+ +
T Consensus       674 lEe~lk~-fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~~ipLWllLakleEk~~~~~rAR~ildrarlkN-P  750 (913)
T KOG0495|consen  674 LEEALKS-FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK-CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN-P  750 (913)
T ss_pred             HHHHHHh-CCchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC-C
Confidence            7776665 3334566666777777777777777776654433 22234456666666666777777878887776654 4


Q ss_pred             CCHHHHHHHHHHHhccCcHHHHHHHHHHHHhcccch
Q 036275          212 PDGGTAKVLISACSSEDQIEQVTTLVRTMHKDMKTA  247 (271)
Q Consensus       212 p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~  247 (271)
                      -|...|...|+.-.+.|..+.|..++.+..+..+..
T Consensus       751 k~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~s  786 (913)
T KOG0495|consen  751 KNALLWLESIRMELRAGNKEQAELLMAKALQECPSS  786 (913)
T ss_pred             CcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcc
Confidence            466777777888778888888887777776655443

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=98.60  E-value=1.6e-05  Score=71.30  Aligned_cols=161  Identities=13%  Similarity=0.097  Sum_probs=104.2

Q ss_pred             CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChhhHH
Q 036275           70 ITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDT-FVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYN  148 (271)
Q Consensus        70 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~-~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~  148 (271)
                      .+.++..+..|.....+.|+.++|..+++...+.  .|+. .....+...+.+.+++++|...+++..... +.+.....
T Consensus        82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~--~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~-p~~~~~~~  158 (694)
T PRK15179         82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQR--FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGG-SSSAREIL  158 (694)
T ss_pred             ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC-CCCHHHHH
Confidence            3555777777777777777777777777777766  3443 445666777777777777777777777663 34556666


Q ss_pred             HHHHHHHcCCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC
Q 036275          149 ILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSED  228 (271)
Q Consensus       149 ~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g  228 (271)
                      .+..++...|++++|..+|+++...+ .-+..++..+..++...|+.++|...|+...+.- .|....|+..+      +
T Consensus       159 ~~a~~l~~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~-~~~~~~~~~~~------~  230 (694)
T PRK15179        159 LEAKSWDEIGQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLDAI-GDGARKLTRRL------V  230 (694)
T ss_pred             HHHHHHHHhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh-CcchHHHHHHH------H
Confidence            77777777777777777777777632 2235677777777777777777777777766542 34444444433      3


Q ss_pred             cHHHHHHHHHHHH
Q 036275          229 QIEQVTTLVRTMH  241 (271)
Q Consensus       229 ~~~~a~~~~~~~~  241 (271)
                      ++..-...++++.
T Consensus       231 ~~~~~~~~~~~~~  243 (694)
T PRK15179        231 DLNADLAALRRLG  243 (694)
T ss_pred             HHHHHHHHHHHcC
Confidence            3444455555554

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.60  E-value=1.7e-05  Score=67.23  Aligned_cols=183  Identities=12%  Similarity=0.108  Sum_probs=135.4

Q ss_pred             hcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHhHHHHH
Q 036275           52 SIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEV  131 (271)
Q Consensus        52 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~  131 (271)
                      .|++.+|.-.|+...+.+ |-+...|..|...-...++-..|+..+++..+.... +....-.|.-.|...|.-..|.+.
T Consensus       298 nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~-NleaLmaLAVSytNeg~q~~Al~~  375 (579)
T KOG1125|consen  298 NGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELDPT-NLEALMALAVSYTNEGLQNQALKM  375 (579)
T ss_pred             cCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCc-cHHHHHHHHHHHhhhhhHHHHHHH
Confidence            888999999999888876 668889999988888888888899888888877422 445566666667766666666666


Q ss_pred             HHHHHh------------------------------------------CCCCCChhhHHHHHHHHHcCCCHHHHHHHHHh
Q 036275          132 LTAMEK------------------------------------------GSYAADISTYNILINIYGRGGFIEKMEGLFQS  169 (271)
Q Consensus       132 ~~~m~~------------------------------------------~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~  169 (271)
                      ++....                                          .+..+|+.+...|.-.|--.|++++|.+.|+.
T Consensus       376 L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~  455 (579)
T KOG1125|consen  376 LDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEA  455 (579)
T ss_pred             HHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHH
Confidence            555432                                          22235667777777778888888888888888


Q ss_pred             chhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHH
Q 036275          170 LPAKRLKP-DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPD-GGTAKVLISACSSEDQIEQVTTLVRTM  240 (271)
Q Consensus       170 m~~~g~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~  240 (271)
                      ....  +| |..+||.|..++....+.++|...|.+.++.  .|+ ++....|.-+|...|.+++|...|-..
T Consensus       456 AL~v--~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqL--qP~yVR~RyNlgIS~mNlG~ykEA~~hlL~A  524 (579)
T KOG1125|consen  456 ALQV--KPNDYLLWNRLGATLANGNRSEEAISAYNRALQL--QPGYVRVRYNLGISCMNLGAYKEAVKHLLEA  524 (579)
T ss_pred             HHhc--CCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhc--CCCeeeeehhhhhhhhhhhhHHHHHHHHHHH
Confidence            7765  44 4567888888888888888888888888775  454 345555666778888888888877764

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.59  E-value=2.7e-05  Score=60.02  Aligned_cols=154  Identities=15%  Similarity=0.146  Sum_probs=93.7

Q ss_pred             HHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHH---
Q 036275           79 LLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYG---  155 (271)
Q Consensus        79 ~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~---  155 (271)
                      .-...|+..+++++|++.....    .  +......=+..+.+..+++.|.+.++.|.+..   +..|.+.|..++.   
T Consensus       113 ~aa~i~~~~~~~deAl~~~~~~----~--~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~id---ed~tLtQLA~awv~la  183 (299)
T KOG3081|consen  113 LAAIIYMHDGDFDEALKALHLG----E--NLEAAALNVQILLKMHRFDLAEKELKKMQQID---EDATLTQLAQAWVKLA  183 (299)
T ss_pred             HhhHHhhcCCChHHHHHHHhcc----c--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc---hHHHHHHHHHHHHHHh
Confidence            3344566777778777776551    1  22222222344556677777888777777642   3444554544443   


Q ss_pred             -cCCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHH-HH
Q 036275          156 -RGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIE-QV  233 (271)
Q Consensus       156 -~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~-~a  233 (271)
                       ..+.+.+|.-+|++|.++ ..|++.+.+-...++...|++++|..++++.+.+. .-+..+...++-.-...|... ..
T Consensus       184 ~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd-~~dpetL~Nliv~a~~~Gkd~~~~  261 (299)
T KOG3081|consen  184 TGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKD-AKDPETLANLIVLALHLGKDAEVT  261 (299)
T ss_pred             ccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhcc-CCCHHHHHHHHHHHHHhCCChHHH
Confidence             345677788888887764 46777777777777778888888888888777654 335556665555555555443 34


Q ss_pred             HHHHHHHHhc
Q 036275          234 TTLVRTMHKD  243 (271)
Q Consensus       234 ~~~~~~~~~~  243 (271)
                      .+.+.++...
T Consensus       262 ~r~l~QLk~~  271 (299)
T KOG3081|consen  262 ERNLSQLKLS  271 (299)
T ss_pred             HHHHHHHHhc
Confidence            4455555443

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=98.59  E-value=2.5e-05  Score=67.52  Aligned_cols=181  Identities=14%  Similarity=0.110  Sum_probs=133.1

Q ss_pred             HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC----C----------CCCCHH--HHHHHHHHHHc
Q 036275           58 AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKS----G----------LKPDTF--VINSMLNLYGR  121 (271)
Q Consensus        58 A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----~----------~~~~~~--~~~~li~~~~~  121 (271)
                      +...+..+...|||   .+|+.|-..|....+.+-..+++......    +          -+|+..  ++..+...|-.
T Consensus       130 ~~~yl~~~l~KgvP---slF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~  206 (517)
T PF12569_consen  130 LDEYLRPQLRKGVP---SLFSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDY  206 (517)
T ss_pred             HHHHHHHHHhcCCc---hHHHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHH
Confidence            44555666777765   45666666666565555566666555432    1          134443  44666778889


Q ss_pred             cCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 036275          122 LGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEI  201 (271)
Q Consensus       122 ~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~  201 (271)
                      .|+.++|++++++..+.. |..+..|..-...+-..|++++|.+.++..+..... |...=+..+..+.++|+.++|.++
T Consensus       207 ~g~~~~Al~~Id~aI~ht-Pt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~-DRyiNsK~aKy~LRa~~~e~A~~~  284 (517)
T PF12569_consen  207 LGDYEKALEYIDKAIEHT-PTLVELYMTKARILKHAGDLKEAAEAMDEARELDLA-DRYINSKCAKYLLRAGRIEEAEKT  284 (517)
T ss_pred             hCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChh-hHHHHHHHHHHHHHCCCHHHHHHH
Confidence            999999999999999873 344789999999999999999999999999987532 666777778889999999999999


Q ss_pred             HHHHHHCCCCCCHHH------H--HHHHHHHhccCcHHHHHHHHHHHHhc
Q 036275          202 FEEMIDAGCYPDGGT------A--KVLISACSSEDQIEQVTTLVRTMHKD  243 (271)
Q Consensus       202 ~~~m~~~~~~p~~~~------~--~~l~~~~~~~g~~~~a~~~~~~~~~~  243 (271)
                      +......+..|-...      |  .....+|.+.|++..|++.|..+.+.
T Consensus       285 ~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~  334 (517)
T PF12569_consen  285 ASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLKH  334 (517)
T ss_pred             HHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence            999887664443322      1  33456788999999999888777653

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=98.58  E-value=3.4e-06  Score=60.65  Aligned_cols=108  Identities=6%  Similarity=-0.056  Sum_probs=79.3

Q ss_pred             HHHHHHHHCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHhchhCC
Q 036275           95 GVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR  174 (271)
Q Consensus        95 ~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g  174 (271)
                      .++++..+.  .|+  .+..+...+...|++++|...|+...... +.+...|..+..++.+.|++++|...|++.....
T Consensus        14 ~~~~~al~~--~p~--~~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~   88 (144)
T PRK15359         14 DILKQLLSV--DPE--TVYASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD   88 (144)
T ss_pred             HHHHHHHHc--CHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence            455555544  333  34456677778888888888888887763 4567788888888888888888888888887653


Q ss_pred             CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 036275          175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDA  208 (271)
Q Consensus       175 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~  208 (271)
                       +.+..++..+..++...|++++|...|+...+.
T Consensus        89 -p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~  121 (144)
T PRK15359         89 -ASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKM  121 (144)
T ss_pred             -CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence             335677888888888888888888888887765

>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=98.58  E-value=1.1e-06  Score=73.40  Aligned_cols=124  Identities=10%  Similarity=0.068  Sum_probs=100.4

Q ss_pred             CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChhh
Q 036275           69 GITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKS--GLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADIST  146 (271)
Q Consensus        69 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~--~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~  146 (271)
                      +.+.++.....+++.+....+++.+..++-+....  ....-..|.+++|+.|.+.|..+.+..++..=...|+.||..+
T Consensus        61 ~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s  140 (429)
T PF10037_consen   61 KKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFS  140 (429)
T ss_pred             CCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhh
Confidence            45667888888888888888888998888888776  3333344556899999999999999999988888899999999


Q ss_pred             HHHHHHHHHcCCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhc
Q 036275          147 YNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRK  192 (271)
Q Consensus       147 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~  192 (271)
                      +|.|++.+.+.|++..|.++...|...+...++.|+...+.+|.+-
T Consensus       141 ~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~  186 (429)
T PF10037_consen  141 FNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY  186 (429)
T ss_pred             HHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence            9999999999999999999998888777666777777777666554

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.58  E-value=0.00011  Score=56.31  Aligned_cols=202  Identities=13%  Similarity=0.061  Sum_probs=115.5

Q ss_pred             hcCHHHHHHHHHHHHHc---C-CCCCHH-HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHh
Q 036275           52 SIYFSDAHAVFEEMKRL---G-ITPTMK-SHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFE  126 (271)
Q Consensus        52 ~g~~~~A~~~~~~~~~~---~-~~~~~~-~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~  126 (271)
                      ..+.++.++++..+...   | ..++.. .|..++-+..-.|+.+.|...++++...- +-+...-..-...+-..|+++
T Consensus        25 ~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f-p~S~RV~~lkam~lEa~~~~~  103 (289)
T KOG3060|consen   25 VRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF-PGSKRVGKLKAMLLEATGNYK  103 (289)
T ss_pred             ccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhchh
Confidence            66677777777666432   2 223322 23334444455677777777777776653 112221111122234467777


Q ss_pred             HHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 036275          127 KMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMI  206 (271)
Q Consensus       127 ~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~  206 (271)
                      +|+++++.+.+.. |.|.+++---+.+.-..|+.-+|++-+....+. +..|...|..+-..|...|++++|.-.+++++
T Consensus       104 ~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~l  181 (289)
T KOG3060|consen  104 EAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELL  181 (289)
T ss_pred             hHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHH
Confidence            7777777777664 555666665566666666666666666655543 34567777777777777777777777777776


Q ss_pred             HCCCCCCHHHHHHHHHHHhc---cCcHHHHHHHHHHHHhcccchhHHHHHHHhh
Q 036275          207 DAGCYPDGGTAKVLISACSS---EDQIEQVTTLVRTMHKDMKTALPIYFNLYGE  257 (271)
Q Consensus       207 ~~~~~p~~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~  257 (271)
                      -.. +.+..-+..+...+..   ..+...+.+++.+..+.++.....++.+|..
T Consensus       182 l~~-P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~~ral~GI~lc  234 (289)
T KOG3060|consen  182 LIQ-PFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPKNLRALFGIYLC  234 (289)
T ss_pred             HcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHhHHHHHHHHHH
Confidence            542 3333334444444322   2344566677777766666555555555443

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=98.57  E-value=5.9e-06  Score=59.57  Aligned_cols=123  Identities=13%  Similarity=0.145  Sum_probs=65.1

Q ss_pred             chHHHHHH-hcCHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH--HHHHHHHH
Q 036275           44 PNLFVFIF-SIYFSDAHAVFEEMKRLGITPT---MKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDT--FVINSMLN  117 (271)
Q Consensus        44 y~~ll~~~-~g~~~~A~~~~~~~~~~~~~~~---~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~--~~~~~li~  117 (271)
                      |..++..+ .++...+.+.++.+.+.. +.+   ....-.+...+...|++++|...|+........++.  ...-.+..
T Consensus        15 y~~~~~~~~~~~~~~~~~~~~~l~~~~-~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~   93 (145)
T PF09976_consen   15 YEQALQALQAGDPAKAEAAAEQLAKDY-PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLAR   93 (145)
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHH
Confidence            55555666 666666666666665543 222   222223445555666666666666666665422221  12233455


Q ss_pred             HHHccCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHh
Q 036275          118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQS  169 (271)
Q Consensus       118 ~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~  169 (271)
                      .+...|++++|+..++.....  ......+....++|.+.|+.++|...|+.
T Consensus        94 ~~~~~~~~d~Al~~L~~~~~~--~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~  143 (145)
T PF09976_consen   94 ILLQQGQYDEALATLQQIPDE--AFKALAAELLGDIYLAQGDYDEARAAYQK  143 (145)
T ss_pred             HHHHcCCHHHHHHHHHhccCc--chHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence            556666666666666553322  22344455566666666666666666654

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=98.56  E-value=7.6e-05  Score=66.97  Aligned_cols=125  Identities=15%  Similarity=0.160  Sum_probs=71.5

Q ss_pred             chHHHHHH--hcCHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH--HHHHHHHH
Q 036275           44 PNLFVFIF--SIYFSDAHAVFEEMKRLG--ITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDT--FVINSMLN  117 (271)
Q Consensus        44 y~~ll~~~--~g~~~~A~~~~~~~~~~~--~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~--~~~~~li~  117 (271)
                      -+.|...|  .|+++.++.+...+....  -..-+..|--+.++|...|++++|..+|.+..+.  .++.  ..+--|..
T Consensus       273 l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~--~~d~~~l~~~GlgQ  350 (1018)
T KOG2002|consen  273 LNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKA--DNDNFVLPLVGLGQ  350 (1018)
T ss_pred             HHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHcc--CCCCccccccchhH
Confidence            44444444  777777777776665542  1123445666777777777777777777665554  2332  22344666


Q ss_pred             HHHccCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCC----CHHHHHHHHHhch
Q 036275          118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGG----FIEKMEGLFQSLP  171 (271)
Q Consensus       118 ~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g----~~~~a~~~~~~m~  171 (271)
                      .+.+.|+++.+...|+...+. .+.+..+..+|...|...+    ..++|..++.+..
T Consensus       351 m~i~~~dle~s~~~fEkv~k~-~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~  407 (1018)
T KOG2002|consen  351 MYIKRGDLEESKFCFEKVLKQ-LPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVL  407 (1018)
T ss_pred             HHHHhchHHHHHHHHHHHHHh-CcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHH
Confidence            777777777777777776665 2344555555655555543    2344444444433

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=98.52  E-value=4.1e-06  Score=72.61  Aligned_cols=196  Identities=14%  Similarity=0.087  Sum_probs=136.8

Q ss_pred             HHHHHHHhhcCchHHHHHH--hcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH
Q 036275           33 MLINFLLLQHTPNLFVFIF--SIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTF  110 (271)
Q Consensus        33 ~~~~f~~~~~~y~~ll~~~--~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~  110 (271)
                      |..+|+++.- |.-+|..|  .|+-..|..+..+..++  +||+..|..+.+.....--++.|.++.+..-.+       
T Consensus       417 Al~I~Erlem-w~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGDv~~d~s~yEkawElsn~~sar-------  486 (777)
T KOG1128|consen  417 ALVIFERLEM-WDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGDVLHDPSLYEKAWELSNYISAR-------  486 (777)
T ss_pred             HHHHHHhHHH-HHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhhhccChHHHHHHHHHhhhhhHH-------
Confidence            3344554433 77777777  77778887777776663  677888877777766666667777766554332       


Q ss_pred             HHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHhchhCCCCCC-HHHHHHHHHHH
Q 036275          111 VINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPD-VVTWTSRLAAY  189 (271)
Q Consensus       111 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~-~~~~~~li~~~  189 (271)
                      .-..+.....+.++++++.+.|+.-.+.. +....+|-.+..+..+.++++.|.+.|......  .|+ ...||.+-.+|
T Consensus       487 A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~q~av~aF~rcvtL--~Pd~~eaWnNls~ay  563 (777)
T KOG1128|consen  487 AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTL--EPDNAEAWNNLSTAY  563 (777)
T ss_pred             HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhhHHHHHHHHHHhhc--CCCchhhhhhhhHHH
Confidence            11222222334677888888887666653 456777888888888888888888888887765  454 56788888888


Q ss_pred             HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHh
Q 036275          190 SRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHK  242 (271)
Q Consensus       190 ~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~  242 (271)
                      .+.++-.+|...+.+..+.+ .-+...|...+-...+.|.+++|.+.+.++..
T Consensus       564 i~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rll~  615 (777)
T KOG1128|consen  564 IRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRLLD  615 (777)
T ss_pred             HHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHHHH
Confidence            88888888888888888766 44555666666667788888888888887753

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=98.51  E-value=7.6e-06  Score=71.04  Aligned_cols=198  Identities=12%  Similarity=0.058  Sum_probs=156.6

Q ss_pred             hcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHhHHHHH
Q 036275           52 SIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEV  131 (271)
Q Consensus        52 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~  131 (271)
                      .|-...|..+|+++         ..|..+|.+|...|+..+|..+..+..+.  +||+..|..+.+.....--+++|.++
T Consensus       411 lGitksAl~I~Erl---------emw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGDv~~d~s~yEkawEl  479 (777)
T KOG1128|consen  411 LGITKSALVIFERL---------EMWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGDVLHDPSLYEKAWEL  479 (777)
T ss_pred             cchHHHHHHHHHhH---------HHHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhhhccChHHHHHHHHH
Confidence            77788888888765         35778899999999999999988887774  78888998888888777778888888


Q ss_pred             HHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 036275          132 LTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCY  211 (271)
Q Consensus       132 ~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~  211 (271)
                      .+....+       .-..+.....+.++++++.+.|+.-.+.. .....+|-.+-.+..+.+++..|.+.|...+... +
T Consensus       480 sn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~-P  550 (777)
T KOG1128|consen  480 SNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLE-P  550 (777)
T ss_pred             hhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcC-C
Confidence            8765432       11222233344799999999999766542 3356789999999999999999999999988763 3


Q ss_pred             CCHHHHHHHHHHHhccCcHHHHHHHHHHHHhcc---cchhHHHHHHHhhccccccchhhhh
Q 036275          212 PDGGTAKVLISACSSEDQIEQVTTLVRTMHKDM---KTALPIYFNLYGEKGVARSNLGQYI  269 (271)
Q Consensus       212 p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~~~~~~~~~G~~~~a~~~~~  269 (271)
                      -+...|+.+-.++.+.++-.+|...+++..+-+   ...+..++-.-.+.|..++|++.|-
T Consensus       551 d~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~  611 (777)
T KOG1128|consen  551 DNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYH  611 (777)
T ss_pred             CchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHH
Confidence            356889999999999999999999999998765   3445667778899999999988764

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=98.50  E-value=9.2e-06  Score=57.68  Aligned_cols=120  Identities=8%  Similarity=-0.019  Sum_probs=83.3

Q ss_pred             HHHHHHHCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHhchhCCC
Q 036275           96 VINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL  175 (271)
Q Consensus        96 ~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~  175 (271)
                      .+++....... +......+...+...|+.++|.+.++.....+ +.+...+..+...+...|++++|...+++....+ 
T Consensus         5 ~~~~~l~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-   81 (135)
T TIGR02552         5 TLKDLLGLDSE-QLEQIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-   81 (135)
T ss_pred             hHHHHHcCChh-hHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-
Confidence            34455544211 33445666777778888888888888877753 4567777788888888888888888888776653 


Q ss_pred             CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 036275          176 KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVL  220 (271)
Q Consensus       176 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l  220 (271)
                      +.+...+..+...+...|++++|...|+...+.  .|+...+..+
T Consensus        82 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~  124 (135)
T TIGR02552        82 PDDPRPYFHAAECLLALGEPESALKALDLAIEI--CGENPEYSEL  124 (135)
T ss_pred             CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--ccccchHHHH
Confidence            335667777777888888888888888887775  3555444433

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=98.50  E-value=3.5e-05  Score=70.18  Aligned_cols=198  Identities=9%  Similarity=0.065  Sum_probs=131.3

Q ss_pred             chHHHHHH--hcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCC----------------
Q 036275           44 PNLFVFIF--SIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGL----------------  105 (271)
Q Consensus        44 y~~ll~~~--~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~----------------  105 (271)
                      |..|+..|  .+++++|.++.+...+.. |-....|-.+...+.+.++.+.+..+  .+...-.                
T Consensus        34 ~~~Li~~~~~~~~~deai~i~~~~l~~~-P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~~~ve~~~~~i~  110 (906)
T PRK14720         34 LDDLIDAYKSENLTDEAKDICEEHLKEH-KKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKWAIVEHICDKIL  110 (906)
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHhC-CcceehHHHHHHHHHhhcchhhhhhh--hhhhhcccccchhHHHHHHHHHH
Confidence            77888888  999999999999776653 33444455555566677766666555  3322210                


Q ss_pred             --CCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHhchhCCCCCCHHHHH
Q 036275          106 --KPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWT  183 (271)
Q Consensus       106 --~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~  183 (271)
                        .-+...+..+..+|-+.|+.+++..+++++.+.. +-++.+.|.+...|+.. ++++|.+++.+....-+  +..-|+
T Consensus       111 ~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~~i--~~kq~~  186 (906)
T PRK14720        111 LYGENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYLKKAIYRFI--KKKQYV  186 (906)
T ss_pred             hhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHH--hhhcch
Confidence              1122456678888888899999999999999986 66789999999999999 99999999988765411  111111


Q ss_pred             HHHH---HH--HhcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhcccchh
Q 036275          184 SRLA---AY--SRKKLYRRCLEIFEEMIDA-GCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKDMKTAL  248 (271)
Q Consensus       184 ~li~---~~--~~~g~~~~a~~~~~~m~~~-~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~  248 (271)
                      .+..   -+  ....+.+.-..+.+.+... |..--..++.-+...|...++++++..+++.+.+..+...
T Consensus       187 ~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~  257 (906)
T PRK14720        187 GIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNN  257 (906)
T ss_pred             HHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcch
Confidence            1111   11  1122333444444444432 3333345566666778888999999999999987655543

>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]

Probab=98.50  E-value=2.9e-05  Score=72.01  Aligned_cols=190  Identities=14%  Similarity=0.099  Sum_probs=150.9

Q ss_pred             hcCHHHHHHHHHHHHHc-CCCCC---HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHccCCHh
Q 036275           52 SIYFSDAHAVFEEMKRL-GITPT---MKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDT-FVINSMLNLYGRLGQFE  126 (271)
Q Consensus        52 ~g~~~~A~~~~~~~~~~-~~~~~---~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~-~~~~~li~~~~~~g~~~  126 (271)
                      .++.+.|.+++++.... ++.-.   .-.|.++++.-...|.-+...++|++..+..   |+ ..|..|...|.+.+..+
T Consensus      1471 lsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc---d~~~V~~~L~~iy~k~ek~~ 1547 (1710)
T KOG1070|consen 1471 LSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC---DAYTVHLKLLGIYEKSEKND 1547 (1710)
T ss_pred             hhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc---chHHHHHHHHHHHHHhhcch
Confidence            89999999999998764 33322   3346666666667788888999999998863   43 34788999999999999


Q ss_pred             HHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHhchhCCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHH
Q 036275          127 KMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPD---VVTWTSRLAAYSRKKLYRRCLEIFE  203 (271)
Q Consensus       127 ~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~---~~~~~~li~~~~~~g~~~~a~~~~~  203 (271)
                      +|.++++.|.+. +......|...+..+.+.++-++|..++.+..+.  -|.   .......+..=.+.|+.+.+..+|+
T Consensus      1548 ~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~--lPk~eHv~~IskfAqLEFk~GDaeRGRtlfE 1624 (1710)
T KOG1070|consen 1548 EADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKS--LPKQEHVEFISKFAQLEFKYGDAERGRTLFE 1624 (1710)
T ss_pred             hHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhh--cchhhhHHHHHHHHHHHhhcCCchhhHHHHH
Confidence            999999999886 3467889999999999999999999999998765  343   3344555555668899999999999


Q ss_pred             HHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhcccchh
Q 036275          204 EMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKDMKTAL  248 (271)
Q Consensus       204 ~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~  248 (271)
                      ..+..- +--...|+..++.-.++|+.+.++.+|++....+..+.
T Consensus      1625 gll~ay-PKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~k 1668 (1710)
T KOG1070|consen 1625 GLLSAY-PKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIK 1668 (1710)
T ss_pred             HHHhhC-ccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChh
Confidence            988752 33456799999999999999999999999988776554

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=98.49  E-value=3.3e-05  Score=69.28  Aligned_cols=136  Identities=4%  Similarity=-0.065  Sum_probs=90.3

Q ss_pred             CCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHhchhCCCCCC-HHHHHH
Q 036275          106 KPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPD-VVTWTS  184 (271)
Q Consensus       106 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~-~~~~~~  184 (271)
                      ..+...+..|.....+.|..++|..+++...+.. |.+......++.++.+.+++++|...+++....  .|+ ......
T Consensus        83 ~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~-Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~--~p~~~~~~~~  159 (694)
T PRK15179         83 PHTELFQVLVARALEAAHRSDEGLAVWRGIHQRF-PDSSEAFILMLRGVKRQQGIEAGRAEIELYFSG--GSSSAREILL  159 (694)
T ss_pred             cccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhc--CCCCHHHHHH
Confidence            3346667777777777777777777777777652 333556667777777777777777777777665  333 445555


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhccc
Q 036275          185 RLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKDMK  245 (271)
Q Consensus       185 li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~  245 (271)
                      +..++.+.|++++|..+|++....+ +-+..++..+..++...|+.++|...|++..+...
T Consensus       160 ~a~~l~~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~  219 (694)
T PRK15179        160 EAKSWDEIGQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIG  219 (694)
T ss_pred             HHHHHHHhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhC
Confidence            6666677777777777777777632 23356677777777777777777777777655433

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=98.49  E-value=0.0001  Score=61.45  Aligned_cols=208  Identities=10%  Similarity=0.008  Sum_probs=131.7

Q ss_pred             CCchhhHHHHHHHhhcC--ch----HHHHHH---hcCHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHhcCChHHHHH
Q 036275           27 PYPSHFMLINFLLLQHT--PN----LFVFIF---SIYFSDAHAVFEEMKRLG--ITPTMKSHMLLLTAYSKTGNVAKCEG   95 (271)
Q Consensus        27 ~~~~~~~~~~f~~~~~~--y~----~ll~~~---~g~~~~A~~~~~~~~~~~--~~~~~~~~~~li~~~~~~~~~~~a~~   95 (271)
                      .|..+.+.+.|+++...  |.    ..+...   ..++.++...-+.+...+  -.|+...+...+.+......-..+-.
T Consensus       216 Gydp~gM~~ff~rl~~~~~~~~~~p~yl~THPlp~~RIa~lr~ra~q~p~~~~~d~~~~~~~~~r~~~~~~~~~~~~~~~  295 (484)
T COG4783         216 GYDPQGMPEFFERLADQLRYGGQPPEYLLTHPLPEERIADLRNRAEQSPPYNKLDSPDFQLARARIRAKYEALPNQQAAD  295 (484)
T ss_pred             CCCchhHHHHHHHHHHHHhcCCCCChHHhcCCCchhHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHhccccccchHH
Confidence            45566677778877752  11    122222   555666666666664432  34566666666665554433333333


Q ss_pred             HHHHHHHCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHhchhCCC
Q 036275           96 VINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL  175 (271)
Q Consensus        96 ~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~  175 (271)
                      ++.+-.+.  .-...-|..-+. +...|+.++|+..++.+... .|-|+..+....+.+.+.|+.++|.+.++.+...  
T Consensus       296 ~~~~~~~~--~~~aa~YG~A~~-~~~~~~~d~A~~~l~~L~~~-~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--  369 (484)
T COG4783         296 LLAKRSKR--GGLAAQYGRALQ-TYLAGQYDEALKLLQPLIAA-QPDNPYYLELAGDILLEANKAKEAIERLKKALAL--  369 (484)
T ss_pred             HHHHHhCc--cchHHHHHHHHH-HHHhcccchHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--
Confidence            33222221  112233444443 44677888888888887776 3556677777788888888888888888888775  


Q ss_pred             CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHH
Q 036275          176 KPD-VVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMH  241 (271)
Q Consensus       176 ~~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~  241 (271)
                      .|+ ....-.+..++.+.|++.+|..+++...... +-|...|..|.++|...|+..++..-..+..
T Consensus       370 ~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~-p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~  435 (484)
T COG4783         370 DPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFND-PEDPNGWDLLAQAYAELGNRAEALLARAEGY  435 (484)
T ss_pred             CCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcC-CCCchHHHHHHHHHHHhCchHHHHHHHHHHH
Confidence            455 5566677788888888888888888876653 5567788888888888887777766655543

>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif)

Probab=98.46  E-value=4.4e-07  Score=47.97  Aligned_cols=33  Identities=27%  Similarity=0.558  Sum_probs=22.2

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 036275          181 TWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPD  213 (271)
Q Consensus       181 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~  213 (271)
                      +|+.+|.+|++.|++++|.++|++|.+.|+.||
T Consensus         2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~   34 (35)
T TIGR00756         2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD   34 (35)
T ss_pred             cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence            566666666666666666666666666666665

This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.

>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif)

Probab=98.45  E-value=2.9e-07  Score=48.68  Aligned_cols=33  Identities=33%  Similarity=0.592  Sum_probs=21.4

Q ss_pred             hHHHHHHHHHcCCCHHHHHHHHHhchhCCCCCC
Q 036275          146 TYNILINIYGRGGFIEKMEGLFQSLPAKRLKPD  178 (271)
Q Consensus       146 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~  178 (271)
                      +|+++|.+|++.|++++|.++|++|.+.|+.||
T Consensus         2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~   34 (35)
T TIGR00756         2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD   34 (35)
T ss_pred             cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence            466666666666666666666666666666665

This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.41  E-value=0.00011  Score=56.79  Aligned_cols=163  Identities=12%  Similarity=0.065  Sum_probs=121.2

Q ss_pred             HHHHHHCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHhchhCCCC
Q 036275           97 INQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK  176 (271)
Q Consensus        97 ~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~  176 (271)
                      .+.+.......+......-...|+..|++++|++.....      .+......=+..+.+..+.+-|.+.+++|.+..  
T Consensus        96 ~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~------~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~id--  167 (299)
T KOG3081|consen   96 YELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLG------ENLEAAALNVQILLKMHRFDLAEKELKKMQQID--  167 (299)
T ss_pred             HHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhcc------chHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc--
Confidence            344444433433333344455688999999999887652      133444444566778889999999999999763  


Q ss_pred             CCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhcccchhHHHH
Q 036275          177 PDVVTWTSRLAAYSR----KKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKDMKTALPIYF  252 (271)
Q Consensus       177 ~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~  252 (271)
                       +..|.+.|..++..    .+...+|.-+|++|.++ ..|+..+.+-..-++...|++++|..++++...+....+.++.
T Consensus       168 -ed~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~  245 (299)
T KOG3081|consen  168 -EDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLA  245 (299)
T ss_pred             -hHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHH
Confidence             66788878777754    45688999999999875 5899999999999999999999999999999988877777776


Q ss_pred             HH---Hhhccccccchhhhh
Q 036275          253 NL---YGEKGVARSNLGQYI  269 (271)
Q Consensus       253 ~~---~~~~G~~~~a~~~~~  269 (271)
                      ++   -...|...++..+++
T Consensus       246 Nliv~a~~~Gkd~~~~~r~l  265 (299)
T KOG3081|consen  246 NLIVLALHLGKDAEVTERNL  265 (299)
T ss_pred             HHHHHHHHhCCChHHHHHHH
Confidence            65   345677777776665

>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=98.41  E-value=9.6e-06  Score=67.94  Aligned_cols=125  Identities=14%  Similarity=0.169  Sum_probs=106.4

Q ss_pred             CCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhC--CCCCChhhHHHHHHHHHcCCCHHHHHHHHHhchhCCCCCCHH
Q 036275          103 SGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKG--SYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVV  180 (271)
Q Consensus       103 ~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~  180 (271)
                      .+.+.+......+++.+....+.+++..++-+....  ....-..|..++|+.|.+.|..++++.++..=...|+-||..
T Consensus        60 ~~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~  139 (429)
T PF10037_consen   60 RKKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNF  139 (429)
T ss_pred             cCCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChh
Confidence            345667888888999999999999999999888766  233345566799999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc
Q 036275          181 TWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSE  227 (271)
Q Consensus       181 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~  227 (271)
                      +++.||..+.+.|++..|.++..+|...+.-.+..|+..-+.+|.+-
T Consensus       140 s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~  186 (429)
T PF10037_consen  140 SFNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY  186 (429)
T ss_pred             hHHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence            99999999999999999999999988766667777777777776554

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=98.41  E-value=1.8e-05  Score=65.90  Aligned_cols=121  Identities=13%  Similarity=0.113  Sum_probs=90.0

Q ss_pred             HHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHcC
Q 036275           78 MLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRG  157 (271)
Q Consensus        78 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~  157 (271)
                      ..|+..+...++++.|..+++++.+..  |+.  ...+++.+...++-.+|.+++.+..+. .+.+......-...+.+.
T Consensus       173 ~~Ll~~l~~t~~~~~ai~lle~L~~~~--pev--~~~LA~v~l~~~~E~~AI~ll~~aL~~-~p~d~~LL~~Qa~fLl~k  247 (395)
T PF09295_consen  173 DTLLKYLSLTQRYDEAIELLEKLRERD--PEV--AVLLARVYLLMNEEVEAIRLLNEALKE-NPQDSELLNLQAEFLLSK  247 (395)
T ss_pred             HHHHHHHhhcccHHHHHHHHHHHHhcC--CcH--HHHHHHHHHhcCcHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHhc
Confidence            345556666788888888888888773  443  335777777778888888888877765 245667777777778888


Q ss_pred             CCHHHHHHHHHhchhCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHH
Q 036275          158 GFIEKMEGLFQSLPAKRLKPDV-VTWTSRLAAYSRKKLYRRCLEIFEEM  205 (271)
Q Consensus       158 g~~~~a~~~~~~m~~~g~~~~~-~~~~~li~~~~~~g~~~~a~~~~~~m  205 (271)
                      ++.+.|.++.+++...  .|+. .+|..|..+|...|+++.|+..++.+
T Consensus       248 ~~~~lAL~iAk~av~l--sP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~  294 (395)
T PF09295_consen  248 KKYELALEIAKKAVEL--SPSEFETWYQLAECYIQLGDFENALLALNSC  294 (395)
T ss_pred             CCHHHHHHHHHHHHHh--CchhHHHHHHHHHHHHhcCCHHHHHHHHhcC
Confidence            8888888888888776  4554 58888888888888888888777654

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=98.41  E-value=0.00013  Score=65.01  Aligned_cols=189  Identities=10%  Similarity=0.070  Sum_probs=152.9

Q ss_pred             hcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHhHHHHH
Q 036275           52 SIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEV  131 (271)
Q Consensus        52 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~  131 (271)
                      .|++++|.+++.+..+.. +.....|..|...|-+.|+.+++...+-...... +-|...|..+-....+.|+++.|.-+
T Consensus       152 rg~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~ladls~~~~~i~qA~~c  229 (895)
T KOG2076|consen  152 RGDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLADLSEQLGNINQARYC  229 (895)
T ss_pred             hCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHhcccHHHHHHH
Confidence            899999999999999886 6788999999999999999999988876555554 33678899999999999999999999


Q ss_pred             HHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHhchhCCCCCCHH----HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 036275          132 LTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVV----TWTSRLAAYSRKKLYRRCLEIFEEMID  207 (271)
Q Consensus       132 ~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~----~~~~li~~~~~~g~~~~a~~~~~~m~~  207 (271)
                      |.+..+.. +++...+---+..|-+.|+...|.+.|.++.....+.|-.    +...+++.+...++.+.|.+.+.....
T Consensus       230 y~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s  308 (895)
T KOG2076|consen  230 YSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALS  308 (895)
T ss_pred             HHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence            99999884 6677777777889999999999999999998863222222    334445667778888899998888765


Q ss_pred             -CCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhc
Q 036275          208 -AGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKD  243 (271)
Q Consensus       208 -~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~  243 (271)
                       .+-..+...++.++..+.+...++.+...+..+...
T Consensus       309 ~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r  345 (895)
T KOG2076|consen  309 KEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNR  345 (895)
T ss_pred             hccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhcc
Confidence             222455667888888889999999999988888763

>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]

Probab=98.40  E-value=0.00018  Score=67.01  Aligned_cols=200  Identities=15%  Similarity=0.045  Sum_probs=158.1

Q ss_pred             hHHHHHHHhhcC------------chHHHHHH--hcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHH
Q 036275           32 FMLINFLLLQHT------------PNLFVFIF--SIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVI   97 (271)
Q Consensus        32 ~~~~~f~~~~~~------------y~~ll~~~--~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~   97 (271)
                      .|++++++--..            |-+++..-  -|.-+...++|+++.+..-  .-..|..|...|.+.+.+++|-+++
T Consensus      1476 kAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqycd--~~~V~~~L~~iy~k~ek~~~A~ell 1553 (1710)
T KOG1070|consen 1476 KARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYCD--AYTVHLKLLGIYEKSEKNDEADELL 1553 (1710)
T ss_pred             HHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhcc--hHHHHHHHHHHHHHhhcchhHHHHH
Confidence            366666655443            66666655  7888899999999988642  3456888999999999999999999


Q ss_pred             HHHHHCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCC--ChhhHHHHHHHHHcCCCHHHHHHHHHhchhCCC
Q 036275           98 NQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAA--DISTYNILINIYGRGGFIEKMEGLFQSLPAKRL  175 (271)
Q Consensus        98 ~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~  175 (271)
                      +.|.+.-- -....|...+..+.+..+-+.|..++.+..+. +|-  ......-.+..-.+.|+.+.+..+|+.....- 
T Consensus      1554 ~~m~KKF~-q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~-lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ay- 1630 (1710)
T KOG1070|consen 1554 RLMLKKFG-QTRKVWIMYADFLLRQNEAEAARELLKRALKS-LPKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAY- 1630 (1710)
T ss_pred             HHHHHHhc-chhhHHHHHHHHHhcccHHHHHHHHHHHHHhh-cchhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhC-
Confidence            99988732 47788999999999999999999999998876 222  34555666677789999999999999988652 


Q ss_pred             CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHhccCcHHHHHHH
Q 036275          176 KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDG--GTAKVLISACSSEDQIEQVTTL  236 (271)
Q Consensus       176 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~--~~~~~l~~~~~~~g~~~~a~~~  236 (271)
                      +--...|+..|+.=.++|+.+.+..+|++....++.|-.  ..|.-.+..-...|+-..++.+
T Consensus      1631 PKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~vE~V 1693 (1710)
T KOG1070|consen 1631 PKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEKNVEYV 1693 (1710)
T ss_pred             ccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchhhHHHH
Confidence            123568999999999999999999999999999888765  4567777777777776655544

>PF13812 PPR_3: Pentatricopeptide repeat domain

Probab=98.40  E-value=4.3e-07  Score=47.76  Aligned_cols=31  Identities=26%  Similarity=0.400  Sum_probs=12.6

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 036275          181 TWTSRLAAYSRKKLYRRCLEIFEEMIDAGCY  211 (271)
Q Consensus       181 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~  211 (271)
                      +|+.+|.+|++.|+++.|.++|++|.+.|++
T Consensus         3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~   33 (34)
T PF13812_consen    3 TYNALLRACAKAGDPDAALQLFDEMKEQGVK   33 (34)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC
Confidence            3444444444444444444444444443333

>PF13812 PPR_3: Pentatricopeptide repeat domain

Probab=98.39  E-value=7.5e-07  Score=46.79  Aligned_cols=33  Identities=27%  Similarity=0.479  Sum_probs=29.2

Q ss_pred             hhHHHHHHHHHcCCCHHHHHHHHHhchhCCCCC
Q 036275          145 STYNILINIYGRGGFIEKMEGLFQSLPAKRLKP  177 (271)
Q Consensus       145 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~  177 (271)
                      .+|+.+|.+|++.|+++.|.++|++|.+.|++|
T Consensus         2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P   34 (34)
T PF13812_consen    2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP   34 (34)
T ss_pred             cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence            578999999999999999999999999888877

>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends

Probab=98.36  E-value=7.4e-06  Score=54.67  Aligned_cols=77  Identities=18%  Similarity=0.253  Sum_probs=50.7

Q ss_pred             hHHHHHH-hcCHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHhcC--------ChHHHHHHHHHHHHCCCCCCHHHHHH
Q 036275           45 NLFVFIF-SIYFSDAHAVFEEMKRLGI-TPTMKSHMLLLTAYSKTG--------NVAKCEGVINQMHKSGLKPDTFVINS  114 (271)
Q Consensus        45 ~~ll~~~-~g~~~~A~~~~~~~~~~~~-~~~~~~~~~li~~~~~~~--------~~~~a~~~~~~m~~~~~~~~~~~~~~  114 (271)
                      +.+..+| .+++...-.+|..+++.|+ .|+..+|+.++.+.++..        ++-..+.+|+.|...+++|+..||+.
T Consensus        30 ~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYni  109 (120)
T PF08579_consen   30 DNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNI  109 (120)
T ss_pred             HHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHH
Confidence            4445555 7777777777777777777 677777777777766542        23345666667776667777777777


Q ss_pred             HHHHHHc
Q 036275          115 MLNLYGR  121 (271)
Q Consensus       115 li~~~~~  121 (271)
                      ++..+.+
T Consensus       110 vl~~Llk  116 (120)
T PF08579_consen  110 VLGSLLK  116 (120)
T ss_pred             HHHHHHH
Confidence            6665543

Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].

>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]

Probab=98.35  E-value=0.00056  Score=61.15  Aligned_cols=214  Identities=12%  Similarity=0.099  Sum_probs=145.1

Q ss_pred             HHHhhcC-chHHHHHH----hcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHH
Q 036275           37 FLLLQHT-PNLFVFIF----SIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFV  111 (271)
Q Consensus        37 f~~~~~~-y~~ll~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~  111 (271)
                      ...-|.. |..++.++    .|+.++|..+++.....+.. |..|...+-.+|...++.++|..+|++....  .|+..-
T Consensus        36 lkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~--~P~eel  112 (932)
T KOG2053|consen   36 LKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDEAVHLYERANQK--YPSEEL  112 (932)
T ss_pred             HHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhHHHHHHHHHHhh--CCcHHH
Confidence            3333433 77778887    89999999888877666533 8888888989999999999999999988876  677777


Q ss_pred             HHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCC----------HHHHHHHHHhchhCC-CCCCHH
Q 036275          112 INSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGF----------IEKMEGLFQSLPAKR-LKPDVV  180 (271)
Q Consensus       112 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~----------~~~a~~~~~~m~~~g-~~~~~~  180 (271)
                      ...+..+|.+.+++.+-.+.--++.+. ++-....+-.+++.....-.          ..-|.+.++.+.+.+ -.-+..
T Consensus       113 l~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~a  191 (932)
T KOG2053|consen  113 LYHLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPILLALAEKMVQKLLEKKGKIESEA  191 (932)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccchhHHHHHHHHHHHhccCCccchHH
Confidence            778888888888887766665555553 34455555555555543221          234667777766654 222233


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHH-HHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhcccchhHHHHHH
Q 036275          181 TWTSRLAAYSRKKLYRRCLEIFE-EMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKDMKTALPIYFNL  254 (271)
Q Consensus       181 ~~~~li~~~~~~g~~~~a~~~~~-~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~  254 (271)
                      -...-...+...|.+++|+.++. ...+.-..-+...-+.-+..+...+.+++..++-.++...+...+..+++.
T Consensus       192 E~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~~Ddy~~~~~s  266 (932)
T KOG2053|consen  192 EIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKGNDDYKIYTDS  266 (932)
T ss_pred             HHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhCCcchHHHHHH
Confidence            33333445567888999999984 444443334444445566777888899999999888888777765554443

>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]

Probab=98.35  E-value=0.001  Score=55.69  Aligned_cols=80  Identities=9%  Similarity=0.118  Sum_probs=50.0

Q ss_pred             hcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHhHHHHH
Q 036275           52 SIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEV  131 (271)
Q Consensus        52 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~  131 (271)
                      .|++..|.++|....+-  .|+...|.+.|+.=.+-+.++.|..+|++..-.  .|++.+|--..+.-.+.|+...+..+
T Consensus       154 LgNi~gaRqiferW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~~aR~V  229 (677)
T KOG1915|consen  154 LGNIAGARQIFERWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVALARSV  229 (677)
T ss_pred             hcccHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHHHHHHH
Confidence            67777777777776553  677777777777777777777777777666544  35555555545444555555444444


Q ss_pred             HHHH
Q 036275          132 LTAM  135 (271)
Q Consensus       132 ~~~m  135 (271)
                      |+..
T Consensus       230 yerA  233 (677)
T KOG1915|consen  230 YERA  233 (677)
T ss_pred             HHHH
Confidence            4433

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=98.35  E-value=3.4e-05  Score=64.37  Aligned_cols=116  Identities=17%  Similarity=0.203  Sum_probs=98.9

Q ss_pred             hcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHhHHHHH
Q 036275           52 SIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEV  131 (271)
Q Consensus        52 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~  131 (271)
                      .++++.|..+|+++.+..  |+  ....+...+...++-.+|.+++++..+.. +.+......-.+.+.+.++.+.|.++
T Consensus       182 t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~k~~~~lAL~i  256 (395)
T PF09295_consen  182 TQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLSKKKYELALEI  256 (395)
T ss_pred             cccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHH
Confidence            889999999999998875  44  44558888888899999999999988764 34677777788889999999999999


Q ss_pred             HHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHhchhC
Q 036275          132 LTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAK  173 (271)
Q Consensus       132 ~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~  173 (271)
                      .+++.+.. |-+-.+|..|..+|...|+++.|+-.+..+...
T Consensus       257 Ak~av~ls-P~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm~  297 (395)
T PF09295_consen  257 AKKAVELS-PSEFETWYQLAECYIQLGDFENALLALNSCPML  297 (395)
T ss_pred             HHHHHHhC-chhHHHHHHHHHHHHhcCCHHHHHHHHhcCcCC
Confidence            99999973 445679999999999999999999999988743

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=98.35  E-value=9.7e-05  Score=53.20  Aligned_cols=126  Identities=13%  Similarity=0.111  Sum_probs=67.7

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCC--hhhHHHHH
Q 036275           76 SHMLLLTAYSKTGNVAKCEGVINQMHKSGLKP--DTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAAD--ISTYNILI  151 (271)
Q Consensus        76 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~--~~~~~~li  151 (271)
                      .|..++..+ ..++...+...++.+.+....-  .....-.+...+...|++++|...|+........++  ....-.|.
T Consensus        14 ~y~~~~~~~-~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA   92 (145)
T PF09976_consen   14 LYEQALQAL-QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLA   92 (145)
T ss_pred             HHHHHHHHH-HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHH
Confidence            344444444 3566666666666666653221  012222344556666777777777776666542221  12333455


Q ss_pred             HHHHcCCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 036275          152 NIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEE  204 (271)
Q Consensus       152 ~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~  204 (271)
                      ..+...|++++|+..++......  .....+......+...|+.++|...|+.
T Consensus        93 ~~~~~~~~~d~Al~~L~~~~~~~--~~~~~~~~~Gdi~~~~g~~~~A~~~y~~  143 (145)
T PF09976_consen   93 RILLQQGQYDEALATLQQIPDEA--FKALAAELLGDIYLAQGDYDEARAAYQK  143 (145)
T ss_pred             HHHHHcCCHHHHHHHHHhccCcc--hHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence            66666677777777765543332  2334455555666667777776666654

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.34  E-value=0.00028  Score=57.94  Aligned_cols=206  Identities=7%  Similarity=-0.007  Sum_probs=112.5

Q ss_pred             hcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHhHHHHH
Q 036275           52 SIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEV  131 (271)
Q Consensus        52 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~  131 (271)
                      .|+.++...+.+.+.... ..+...|..-.......+++..|+.+-++.++.. +.+...+-.=.+.+...|+.++|.-.
T Consensus       279 eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~~R~~~A~Ia  356 (564)
T KOG1174|consen  279 EGGCEQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIALERHTQAVIA  356 (564)
T ss_pred             ccCHhhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhccchHHHHHH
Confidence            455555555444443321 2233334333444444444555555544444432 11222332223334444555555444


Q ss_pred             HHHHHhCCCCCChhhHHHHHHHHHcCCCHHH------------------------------------HHHHHHhchhCCC
Q 036275          132 LTAMEKGSYAADISTYNILINIYGRGGFIEK------------------------------------MEGLFQSLPAKRL  175 (271)
Q Consensus       132 ~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~------------------------------------a~~~~~~m~~~g~  175 (271)
                      |....... |-+...|..|+..|...|.+.+                                    |.++++.-...  
T Consensus       357 FR~Aq~La-p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~--  433 (564)
T KOG1174|consen  357 FRTAQMLA-PYRLEIYRGLFHSYLAQKRFKEANALANWTIRLFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKI--  433 (564)
T ss_pred             HHHHHhcc-hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhcc--
Confidence            44444321 2234445555555555544444                                    44444443332  


Q ss_pred             CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhcccchhHHH--H
Q 036275          176 KPD-VVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKDMKTALPIY--F  252 (271)
Q Consensus       176 ~~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~--~  252 (271)
                      .|+ ....+.+...+...|..+.+..+++..+..  .||....+.|.+.+...+.++++.+.|....+.++..-..+  +
T Consensus       434 ~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~--~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~sl~Gl  511 (564)
T KOG1174|consen  434 NPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLII--FPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSKRTLRGL  511 (564)
T ss_pred             CCccHHHHHHHHHHHHhhCccchHHHHHHHHHhh--ccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccchHHHHHH
Confidence            344 234566667778888888999998887664  68888889999999999999999999988877776655443  3


Q ss_pred             HHHhhccccccc
Q 036275          253 NLYGEKGVARSN  264 (271)
Q Consensus       253 ~~~~~~G~~~~a  264 (271)
                      +.+.|.-...+|
T Consensus       512 ~~lEK~~~~~DA  523 (564)
T KOG1174|consen  512 RLLEKSDDESDA  523 (564)
T ss_pred             HHHHhccCCCCc
Confidence            334444443333

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.32  E-value=5.2e-05  Score=64.35  Aligned_cols=184  Identities=9%  Similarity=0.016  Sum_probs=144.1

Q ss_pred             HHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHH
Q 036275           83 AYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEK  162 (271)
Q Consensus        83 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~  162 (271)
                      -+.+.|++.+|.-.|+...+.... +...|..|...-...++-..|+..+.+..+.. +.+....-.|.-.|...|.-..
T Consensus       294 ~lm~nG~L~~A~LafEAAVkqdP~-haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~q~~  371 (579)
T KOG1125|consen  294 NLMKNGDLSEAALAFEAAVKQDPQ-HAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGLQNQ  371 (579)
T ss_pred             HHHhcCCchHHHHHHHHHHhhChH-HHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhhHHH
Confidence            356788999999999988887533 66789999999999999999999999988863 4457777788878877776666


Q ss_pred             HHHHHHhch------------------------------------------hCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 036275          163 MEGLFQSLP------------------------------------------AKRLKPDVVTWTSRLAAYSRKKLYRRCLE  200 (271)
Q Consensus       163 a~~~~~~m~------------------------------------------~~g~~~~~~~~~~li~~~~~~g~~~~a~~  200 (271)
                      |.+.++.=.                                          ..+..+|+.....|.-.|.-.|++++|..
T Consensus       372 Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiD  451 (579)
T KOG1125|consen  372 ALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVD  451 (579)
T ss_pred             HHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHH
Confidence            666655421                                          11223566777788888888999999999


Q ss_pred             HHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhcccchhHH---HHHHHhhccccccchhhhh
Q 036275          201 IFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKDMKTALPI---YFNLYGEKGVARSNLGQYI  269 (271)
Q Consensus       201 ~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~---~~~~~~~~G~~~~a~~~~~  269 (271)
                      .|+..+... +-|..+|+.|-.+++...+..+|+.-|++..+-.+.-..+   +--.|...|.+++|++.|+
T Consensus       452 cf~~AL~v~-Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL  522 (579)
T KOG1125|consen  452 CFEAALQVK-PNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLL  522 (579)
T ss_pred             HHHHHHhcC-CchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHH
Confidence            999988763 4467889999999999999999999999998765544433   4445889999999999886

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=98.29  E-value=0.0008  Score=58.19  Aligned_cols=118  Identities=11%  Similarity=0.104  Sum_probs=73.9

Q ss_pred             HHHHHHHHcCCCHHHHHHHHHhchhCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc
Q 036275          148 NILINIYGRGGFIEKMEGLFQSLPAKRLKPDV-VTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSS  226 (271)
Q Consensus       148 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~-~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~  226 (271)
                      -.++..|-+.|+++.|...++....+  .|+. ..|..=.+.+...|++++|...+++.++.. .||...=..-.....+
T Consensus       375 y~laqh~D~~g~~~~A~~yId~AIdH--TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD-~aDR~INsKcAKYmLr  451 (700)
T KOG1156|consen  375 YFLAQHYDKLGDYEVALEYIDLAIDH--TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD-TADRAINSKCAKYMLR  451 (700)
T ss_pred             HHHHHHHHHcccHHHHHHHHHHHhcc--CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-chhHHHHHHHHHHHHH
Confidence            34556666777777777777766654  5553 344455577777788888888877777654 3444443344555566


Q ss_pred             cCcHHHHHHHHHHHHhcccchhHHH------------HHHHhhccccccchhhh
Q 036275          227 EDQIEQVTTLVRTMHKDMKTALPIY------------FNLYGEKGVARSNLGQY  268 (271)
Q Consensus       227 ~g~~~~a~~~~~~~~~~~~~~~~~~------------~~~~~~~G~~~~a~~~~  268 (271)
                      .++.++|.++.....+.+......+            -.+|.+.|++..|++.|
T Consensus       452 An~i~eA~~~~skFTr~~~~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkf  505 (700)
T KOG1156|consen  452 ANEIEEAEEVLSKFTREGFGAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKF  505 (700)
T ss_pred             ccccHHHHHHHHHhhhcccchhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHH
Confidence            6777888877777776664222111            23477777777777665

>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]

Probab=98.28  E-value=0.00023  Score=60.27  Aligned_cols=203  Identities=11%  Similarity=0.095  Sum_probs=140.6

Q ss_pred             HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC---ChHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHccCCHhHHHH
Q 036275           55 FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTG---NVAKCEGVINQMHKS-GLKPDTFVINSMLNLYGRLGQFEKMEE  130 (271)
Q Consensus        55 ~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~---~~~~a~~~~~~m~~~-~~~~~~~~~~~li~~~~~~g~~~~a~~  130 (271)
                      -+++..+++.....-..-+..+|..+...=-..-   ..+.....++++... ..+|+ .+|-.+|+.-.+..-+..|..
T Consensus       309 t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~t-Lv~~~~mn~irR~eGlkaaR~  387 (656)
T KOG1914|consen  309 TDEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLT-LVYCQYMNFIRRAEGLKAARK  387 (656)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCc-eehhHHHHHHHHhhhHHHHHH
Confidence            4556666665544322224444443332222222   256667777777665 33444 357778888888888999999


Q ss_pred             HHHHHHhCCCCC-ChhhHHHHHHHHHcCCCHHHHHHHHHh-chhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 036275          131 VLTAMEKGSYAA-DISTYNILINIYGRGGFIEKMEGLFQS-LPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDA  208 (271)
Q Consensus       131 ~~~~m~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~-m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~  208 (271)
                      +|.+..+.+..+ ++.+.++++..||. ++.+-|.++|+. ++..|  -++.--...+.-+...++-..|..+|++.+..
T Consensus       388 iF~kaR~~~r~~hhVfVa~A~mEy~cs-kD~~~AfrIFeLGLkkf~--d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s  464 (656)
T KOG1914|consen  388 IFKKAREDKRTRHHVFVAAALMEYYCS-KDKETAFRIFELGLKKFG--DSPEYVLKYLDFLSHLNDDNNARALFERVLTS  464 (656)
T ss_pred             HHHHHhhccCCcchhhHHHHHHHHHhc-CChhHHHHHHHHHHHhcC--CChHHHHHHHHHHHHhCcchhHHHHHHHHHhc
Confidence            999999987777 67788888888775 778899999997 44443  23444567777788889999999999999988


Q ss_pred             CCCCCH--HHHHHHHHHHhccCcHHHHHHHHHHHHhccc-------chhHHHHHHHhhcccc
Q 036275          209 GCYPDG--GTAKVLISACSSEDQIEQVTTLVRTMHKDMK-------TALPIYFNLYGEKGVA  261 (271)
Q Consensus       209 ~~~p~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-------~~~~~~~~~~~~~G~~  261 (271)
                      ++.|+.  .+|..++..-+.-|++..+.++-+++....+       .....+++.|.-.+..
T Consensus       465 ~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~~~qe~~~~~~~~~v~RY~~~d~~  526 (656)
T KOG1914|consen  465 VLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFPADQEYEGNETALFVDRYGILDLY  526 (656)
T ss_pred             cCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcchhhcCCCChHHHHHHHHhhcccc
Confidence            766664  7899999999999999999999888765443       3334455555444443

>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]

Probab=98.26  E-value=0.00033  Score=58.48  Aligned_cols=189  Identities=12%  Similarity=0.099  Sum_probs=149.9

Q ss_pred             hcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHhHHHHH
Q 036275           52 SIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEV  131 (271)
Q Consensus        52 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~  131 (271)
                      .+++..|..+|+.....+ .-+...|---+.+=.+.+.+..|..+|++....=...| ..|-..+.+--..|+...|.++
T Consensus        86 q~e~~RARSv~ERALdvd-~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVd-qlWyKY~ymEE~LgNi~gaRqi  163 (677)
T KOG1915|consen   86 QKEIQRARSVFERALDVD-YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVD-QLWYKYIYMEEMLGNIAGARQI  163 (677)
T ss_pred             HHHHHHHHHHHHHHHhcc-cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHH-HHHHHHHHHHHHhcccHHHHHH
Confidence            778889999999998765 44777787888888899999999999999987632322 3455666667788999999999


Q ss_pred             HHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CC
Q 036275          132 LTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDA-GC  210 (271)
Q Consensus       132 ~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-~~  210 (271)
                      |++-.+-  .|+...|.+.|+.-.+.+.++.|..++++....  .|++.+|-...+-=.+.|+...|..++....+. |-
T Consensus       164 ferW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~  239 (677)
T KOG1915|consen  164 FERWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGD  239 (677)
T ss_pred             HHHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhh
Confidence            9998885  799999999999999999999999999998875  589999999988888999999999999987763 21


Q ss_pred             -CCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhcccc
Q 036275          211 -YPDGGTAKVLISACSSEDQIEQVTTLVRTMHKDMKT  246 (271)
Q Consensus       211 -~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~  246 (271)
                       .-+...+.++..--..+..++.|.-+|+-..+.-+.
T Consensus       240 d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk  276 (677)
T KOG1915|consen  240 DEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPK  276 (677)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence             112334444444445677888888888877665433

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.26  E-value=0.00059  Score=52.48  Aligned_cols=158  Identities=11%  Similarity=0.110  Sum_probs=123.0

Q ss_pred             cCChHHHHHHHHHHHHC---C-CCCCHHH-HHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHH
Q 036275           87 TGNVAKCEGVINQMHKS---G-LKPDTFV-INSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIE  161 (271)
Q Consensus        87 ~~~~~~a~~~~~~m~~~---~-~~~~~~~-~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~  161 (271)
                      ..+.++..+++.++...   | ..++..+ |..++-+....|+.+.|...++.+... ++-+..+-..-.--+-..|+++
T Consensus        25 ~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~-fp~S~RV~~lkam~lEa~~~~~  103 (289)
T KOG3060|consen   25 VRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDR-FPGSKRVGKLKAMLLEATGNYK  103 (289)
T ss_pred             ccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHh-CCCChhHHHHHHHHHHHhhchh
Confidence            35677888888777543   4 5556544 666777778899999999999999876 3444444333334456689999


Q ss_pred             HHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHH
Q 036275          162 KMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMH  241 (271)
Q Consensus       162 ~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~  241 (271)
                      +|+++++.+.+.. +.|.+++-.=+...-..|...+|.+-+..-.+. +..|...|..+...|...|++++|.-.++++.
T Consensus       104 ~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~l  181 (289)
T KOG3060|consen  104 EAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELL  181 (289)
T ss_pred             hHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHH
Confidence            9999999999885 446778887787888888888998888887775 67899999999999999999999999999987


Q ss_pred             hcccch
Q 036275          242 KDMKTA  247 (271)
Q Consensus       242 ~~~~~~  247 (271)
                      =..|..
T Consensus       182 l~~P~n  187 (289)
T KOG3060|consen  182 LIQPFN  187 (289)
T ss_pred             HcCCCc
Confidence            655544

>PLN02789 farnesyltranstransferase

Probab=98.25  E-value=0.0016  Score=53.29  Aligned_cols=185  Identities=9%  Similarity=-0.018  Sum_probs=135.6

Q ss_pred             hc-CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCh--HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHhHH
Q 036275           52 SI-YFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNV--AKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKM  128 (271)
Q Consensus        52 ~g-~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~--~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a  128 (271)
                      .| +++++++.++++.+.+ +-+..+|+...-.+.+.|+.  ++++.+++++.+...+ +.+.|+....++...|+++++
T Consensus        84 L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~dpk-Ny~AW~~R~w~l~~l~~~~ee  161 (320)
T PLN02789         84 LDADLEEELDFAEDVAEDN-PKNYQIWHHRRWLAEKLGPDAANKELEFTRKILSLDAK-NYHAWSHRQWVLRTLGGWEDE  161 (320)
T ss_pred             cchhHHHHHHHHHHHHHHC-CcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHhhhHHHH
Confidence            44 6899999999998876 55777888776666666653  6788899999887643 788899988889999999999


Q ss_pred             HHHHHHHHhCCCCCChhhHHHHHHHHHcC---CCH----HHHHHHHHhchhCCCCCCHHHHHHHHHHHHhc----CCHHH
Q 036275          129 EEVLTAMEKGSYAADISTYNILINIYGRG---GFI----EKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRK----KLYRR  197 (271)
Q Consensus       129 ~~~~~~m~~~~~~~~~~~~~~li~~~~~~---g~~----~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~----g~~~~  197 (271)
                      ++.++++.+.+ +.+..+|+.....+.+.   |..    ++..+...++.... +-|...|+.+...+...    ++..+
T Consensus       162 L~~~~~~I~~d-~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~-P~N~SaW~Yl~~ll~~~~~~l~~~~~  239 (320)
T PLN02789        162 LEYCHQLLEED-VRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILAN-PRNESPWRYLRGLFKDDKEALVSDPE  239 (320)
T ss_pred             HHHHHHHHHHC-CCchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhC-CCCcCHHHHHHHHHhcCCcccccchh
Confidence            99999999875 45677787777666554   222    45666665655542 23567888888887763    34466


Q ss_pred             HHHHHHHHHHCCCCCCHHHHHHHHHHHhccC------------------cHHHHHHHHHHHH
Q 036275          198 CLEIFEEMIDAGCYPDGGTAKVLISACSSED------------------QIEQVTTLVRTMH  241 (271)
Q Consensus       198 a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g------------------~~~~a~~~~~~~~  241 (271)
                      |.+.+.+....+ +.+......|+..+....                  ..++|.+++..+.
T Consensus       240 ~~~~~~~~~~~~-~~s~~al~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~l~  300 (320)
T PLN02789        240 VSSVCLEVLSKD-SNHVFALSDLLDLLCEGLQPTAEFRDTVDTLAEELSDSTLAQAVCSELE  300 (320)
T ss_pred             HHHHHHHhhccc-CCcHHHHHHHHHHHHhhhccchhhhhhhhccccccccHHHHHHHHHHHH
Confidence            888888876654 446778888888887532                  3467888888884

>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends

Probab=98.25  E-value=3e-05  Score=51.85  Aligned_cols=79  Identities=15%  Similarity=0.237  Sum_probs=57.6

Q ss_pred             HHHHHHHHcCCCHHHHHHHHHhchhCCC-CCCHHHHHHHHHHHHhcC--------CHHHHHHHHHHHHHCCCCCCHHHHH
Q 036275          148 NILINIYGRGGFIEKMEGLFQSLPAKRL-KPDVVTWTSRLAAYSRKK--------LYRRCLEIFEEMIDAGCYPDGGTAK  218 (271)
Q Consensus       148 ~~li~~~~~~g~~~~a~~~~~~m~~~g~-~~~~~~~~~li~~~~~~g--------~~~~a~~~~~~m~~~~~~p~~~~~~  218 (271)
                      ...|..+...+++...-.+|+.+++.|+ .|+..+|+.++.+..+..        ..-+.+.+++.|...+++|+..||+
T Consensus        29 i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYn  108 (120)
T PF08579_consen   29 IDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYN  108 (120)
T ss_pred             HHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHH
Confidence            3445555566777777777777777777 777777877777766532        2335677888888888889999998


Q ss_pred             HHHHHHhc
Q 036275          219 VLISACSS  226 (271)
Q Consensus       219 ~l~~~~~~  226 (271)
                      .++..+.+
T Consensus       109 ivl~~Llk  116 (120)
T PF08579_consen  109 IVLGSLLK  116 (120)
T ss_pred             HHHHHHHH
Confidence            88887654

Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=98.20  E-value=0.00043  Score=59.80  Aligned_cols=220  Identities=10%  Similarity=0.036  Sum_probs=111.9

Q ss_pred             chHHHHHH-hcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc
Q 036275           44 PNLFVFIF-SIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRL  122 (271)
Q Consensus        44 y~~ll~~~-~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~  122 (271)
                      |..++..| .+++...++..+.+.+. .+--..+.....-.+...|+.++|......-....+. +.+.|+.+.-.+...
T Consensus        11 F~~~lk~yE~kQYkkgLK~~~~iL~k-~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~-S~vCwHv~gl~~R~d   88 (700)
T KOG1156|consen   11 FRRALKCYETKQYKKGLKLIKQILKK-FPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLK-SHVCWHVLGLLQRSD   88 (700)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHh-CCccchhHHhccchhhcccchHHHHHHHHHHhccCcc-cchhHHHHHHHHhhh
Confidence            44556666 66666666666665552 2222333333333445556666666665555543322 455566666666666


Q ss_pred             CCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHhchhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHH
Q 036275          123 GQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP-DVVTWTSRLAAYSRKKLYRRCLEI  201 (271)
Q Consensus       123 g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~-~~~~~~~li~~~~~~g~~~~a~~~  201 (271)
                      .++++|++.|......+ +.|...+.-+.-.-+..|+++.......+..+.  .| ....|..+..++--.|+...|..+
T Consensus        89 K~Y~eaiKcy~nAl~~~-~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql--~~~~ra~w~~~Avs~~L~g~y~~A~~i  165 (700)
T KOG1156|consen   89 KKYDEAIKCYRNALKIE-KDNLQILRDLSLLQIQMRDYEGYLETRNQLLQL--RPSQRASWIGFAVAQHLLGEYKMALEI  165 (700)
T ss_pred             hhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHh--hhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            66666666666666543 344555555555555555665555555555443  22 234555555666666666666666


Q ss_pred             HHHHHHCC-CCCCHHHHHHHHH------HHhccCcHHHHHHHHHHHHhccc---chhHHHHHHHhhccccccchhhh
Q 036275          202 FEEMIDAG-CYPDGGTAKVLIS------ACSSEDQIEQVTTLVRTMHKDMK---TALPIYFNLYGEKGVARSNLGQY  268 (271)
Q Consensus       202 ~~~m~~~~-~~p~~~~~~~l~~------~~~~~g~~~~a~~~~~~~~~~~~---~~~~~~~~~~~~~G~~~~a~~~~  268 (271)
                      +++..... -.|+...|.....      .....|.++.|.+.+.+..+.-.   ..-..-.+++.+.|+.++|+..|
T Consensus       166 l~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y  242 (700)
T KOG1156|consen  166 LEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVDKLAFEETKADLLMKLGQLEEAVKVY  242 (700)
T ss_pred             HHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhhHHhHHHHH
Confidence            66555432 1344433332211      12344555555554444433211   11222334455555555555544

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.19  E-value=0.00017  Score=56.69  Aligned_cols=193  Identities=11%  Similarity=0.087  Sum_probs=139.4

Q ss_pred             chHHHHHH--hcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHH-HHHHH
Q 036275           44 PNLFVFIF--SIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM-LNLYG  120 (271)
Q Consensus        44 y~~ll~~~--~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l-i~~~~  120 (271)
                      +++.+..+  ..++++|++++..-.++. +.+....+.|..+|....++..|-..|+++-..  -|...-|... ...+.
T Consensus        13 ftaviy~lI~d~ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSLY   89 (459)
T KOG4340|consen   13 FTAVVYRLIRDARYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSLY   89 (459)
T ss_pred             hHHHHHHHHHHhhHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHHH
Confidence            66777766  888999999998877765 447888889999999999999999999999876  4555555432 45667


Q ss_pred             ccCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 036275          121 RLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLE  200 (271)
Q Consensus       121 ~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~  200 (271)
                      +.+.+..|.++...|.... ..-......-.......+++..+..++++....|   +..+.+...-...+.|++++|.+
T Consensus        90 ~A~i~ADALrV~~~~~D~~-~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqyEaAvq  165 (459)
T KOG4340|consen   90 KACIYADALRVAFLLLDNP-ALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQYEAAVQ  165 (459)
T ss_pred             HhcccHHHHHHHHHhcCCH-HHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccccHHHHHH
Confidence            8888999999998886641 1112222222333456788889999998887543   44445555555568899999999


Q ss_pred             HHHHHHH-CCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhccc
Q 036275          201 IFEEMID-AGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKDMK  245 (271)
Q Consensus       201 ~~~~m~~-~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~  245 (271)
                      -|....+ .|..| ...|+..+.- .+.|+.+.|.++..++.++|.
T Consensus       166 kFqaAlqvsGyqp-llAYniALaH-y~~~qyasALk~iSEIieRG~  209 (459)
T KOG4340|consen  166 KFQAALQVSGYQP-LLAYNLALAH-YSSRQYASALKHISEIIERGI  209 (459)
T ss_pred             HHHHHHhhcCCCc-hhHHHHHHHH-HhhhhHHHHHHHHHHHHHhhh
Confidence            9998877 55554 4567765544 456899999999999877663

>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat

Probab=98.18  E-value=2.2e-06  Score=43.86  Aligned_cols=25  Identities=32%  Similarity=0.488  Sum_probs=9.4

Q ss_pred             HHHHHHHHHcCCCHHHHHHHHHhch
Q 036275          147 YNILINIYGRGGFIEKMEGLFQSLP  171 (271)
Q Consensus       147 ~~~li~~~~~~g~~~~a~~~~~~m~  171 (271)
                      |+++|++|++.|++++|.++|++|.
T Consensus         3 y~~li~~~~~~~~~~~a~~~~~~M~   27 (31)
T PF01535_consen    3 YNSLISGYCKMGQFEEALEVFDEMR   27 (31)
T ss_pred             HHHHHHHHHccchHHHHHHHHHHHh
Confidence            3333333333333333333333333

Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.16  E-value=0.00011  Score=59.09  Aligned_cols=195  Identities=15%  Similarity=0.143  Sum_probs=129.2

Q ss_pred             chHHHHHH-hcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC-------hHHHHHHHHHHHHCCCCCCHH-HHHH
Q 036275           44 PNLFVFIF-SIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGN-------VAKCEGVINQMHKSGLKPDTF-VINS  114 (271)
Q Consensus        44 y~~ll~~~-~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~-------~~~a~~~~~~m~~~~~~~~~~-~~~~  114 (271)
                      .|.+|..+ .+++.+|..+.+++.    |.++.-|-.-.-.+...|+       ..-|.+.|+-.-+++..-|.. .-.+
T Consensus       289 lNL~iYyL~q~dVqeA~~L~Kdl~----PttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQs  364 (557)
T KOG3785|consen  289 LNLIIYYLNQNDVQEAISLCKDLD----PTTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQS  364 (557)
T ss_pred             hhheeeecccccHHHHHHHHhhcC----CCChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHH
Confidence            66666656 999999998877652    3344444222222333332       445666666555555544433 2445


Q ss_pred             HHHHHHccCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHhchhCCCCCCHHHHHHH-HHHHHhcC
Q 036275          115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSR-LAAYSRKK  193 (271)
Q Consensus       115 li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l-i~~~~~~g  193 (271)
                      +...+.-..++|+++.++..+..-=...|...+ .+..+++..|++.+|+++|-++....++ |..+|..+ .++|.+.+
T Consensus       365 mAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~-N~AQAk~atgny~eaEelf~~is~~~ik-n~~~Y~s~LArCyi~nk  442 (557)
T KOG3785|consen  365 MASYFFLSFQFDDVLTYLNSIESYFTNDDDFNL-NLAQAKLATGNYVEAEELFIRISGPEIK-NKILYKSMLARCYIRNK  442 (557)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhh-HHHHHHHHhcChHHHHHHHhhhcChhhh-hhHHHHHHHHHHHHhcC
Confidence            666666777899999999888876333344444 5889999999999999999888765444 56677555 57889999


Q ss_pred             CHHHHHHHHHHHHHCCCCCCHHHHH-HHHHHHhccCcHHHHHHHHHHHHhcccch
Q 036275          194 LYRRCLEIFEEMIDAGCYPDGGTAK-VLISACSSEDQIEQVTTLVRTMHKDMKTA  247 (271)
Q Consensus       194 ~~~~a~~~~~~m~~~~~~p~~~~~~-~l~~~~~~~g~~~~a~~~~~~~~~~~~~~  247 (271)
                      .+..|+.++-.+..   +.+..+.. .+..-|-+.+++--|-+.|+.++..++.+
T Consensus       443 kP~lAW~~~lk~~t---~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP~p  494 (557)
T KOG3785|consen  443 KPQLAWDMMLKTNT---PSERFSLLQLIANDCYKANEFYYAAKAFDELEILDPTP  494 (557)
T ss_pred             CchHHHHHHHhcCC---chhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCCCc
Confidence            99999887655432   22333333 34455889999999999999887765543

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=98.13  E-value=0.00018  Score=57.83  Aligned_cols=142  Identities=9%  Similarity=0.105  Sum_probs=93.2

Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc-cCCHhHHHHHHHHHHhCCCCCChhhHHHHHHH
Q 036275           75 KSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGR-LGQFEKMEEVLTAMEKGSYAADISTYNILINI  153 (271)
Q Consensus        75 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~-~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~  153 (271)
                      .+|..+|+..-+.+..+.|..+|.+..+.+ ..+...|-.....-.. .++.+.|.++|+...+. ++.+...|...++.
T Consensus         2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~   79 (280)
T PF05843_consen    2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDF   79 (280)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHH
Confidence            467777777777777888888888887543 2234445444444233 45666688888887776 56677778888888


Q ss_pred             HHcCCCHHHHHHHHHhchhCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 036275          154 YGRGGFIEKMEGLFQSLPAKRLKPDV----VTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLIS  222 (271)
Q Consensus       154 ~~~~g~~~~a~~~~~~m~~~g~~~~~----~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~  222 (271)
                      +.+.|+.+.|..+|++....  .|..    ..|...+.-=.+.|+.+.+.++.+++.+.  .|+......++.
T Consensus        80 l~~~~d~~~aR~lfer~i~~--l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~--~~~~~~~~~f~~  148 (280)
T PF05843_consen   80 LIKLNDINNARALFERAISS--LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL--FPEDNSLELFSD  148 (280)
T ss_dssp             HHHTT-HHHHHHHHHHHCCT--SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH--TTTS-HHHHHHC
T ss_pred             HHHhCcHHHHHHHHHHHHHh--cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--hhhhhHHHHHHH
Confidence            88888888888888887654  2333    47788887777888888888888777764  334333333333

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat

Probab=98.13  E-value=3.2e-06  Score=43.23  Aligned_cols=30  Identities=30%  Similarity=0.644  Sum_probs=23.6

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 036275          181 TWTSRLAAYSRKKLYRRCLEIFEEMIDAGC  210 (271)
Q Consensus       181 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~  210 (271)
                      +|+.+|++|++.|++++|.++|++|.+.|+
T Consensus         2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g~   31 (31)
T PF01535_consen    2 TYNSLISGYCKMGQFEEALEVFDEMRERGI   31 (31)
T ss_pred             cHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence            678888888888888888888888877664

Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=98.12  E-value=0.00018  Score=49.49  Aligned_cols=95  Identities=12%  Similarity=0.000  Sum_probs=39.7

Q ss_pred             HHHHHHHccCCHhHHHHHHHHHHhCCC--CCChhhHHHHHHHHHcCCCHHHHHHHHHhchhCCCC--CCHHHHHHHHHHH
Q 036275          114 SMLNLYGRLGQFEKMEEVLTAMEKGSY--AADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK--PDVVTWTSRLAAY  189 (271)
Q Consensus       114 ~li~~~~~~g~~~~a~~~~~~m~~~~~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~--~~~~~~~~li~~~  189 (271)
                      .+...+.+.|++++|.+.++.+.+..-  +.....+..+..++.+.|++++|.+.|+.+......  .....+..+..++
T Consensus         7 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~   86 (119)
T TIGR02795         7 DAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMSL   86 (119)
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHHH
Confidence            334444444455555554444443210  001223333444444555555555555544432100  1123344444444


Q ss_pred             HhcCCHHHHHHHHHHHHHC
Q 036275          190 SRKKLYRRCLEIFEEMIDA  208 (271)
Q Consensus       190 ~~~g~~~~a~~~~~~m~~~  208 (271)
                      ...|+.++|...++++.+.
T Consensus        87 ~~~~~~~~A~~~~~~~~~~  105 (119)
T TIGR02795        87 QELGDKEKAKATLQQVIKR  105 (119)
T ss_pred             HHhCChHHHHHHHHHHHHH
Confidence            4455555555555544443

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=98.12  E-value=0.002  Score=56.84  Aligned_cols=121  Identities=7%  Similarity=-0.028  Sum_probs=89.9

Q ss_pred             HHHHHHHHHcCCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc
Q 036275          147 YNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSS  226 (271)
Q Consensus       147 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~  226 (271)
                      |......+.+.++.++|...+.+..... ......|......+...|.+++|.+.|...+..+ +-+....+++...+..
T Consensus       653 wllaa~~~~~~~~~~~a~~CL~Ea~~~~-~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ld-P~hv~s~~Ala~~lle  730 (799)
T KOG4162|consen  653 WLLAADLFLLSGNDDEARSCLLEASKID-PLSASVYYLRGLLLEVKGQLEEAKEAFLVALALD-PDHVPSMTALAELLLE  730 (799)
T ss_pred             HHHHHHHHHhcCCchHHHHHHHHHHhcc-hhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHH
Confidence            4455667778888888887777776542 3345567777777888899999999998877653 3345677888888889


Q ss_pred             cCcHHHHHH--HHHHHHhcccchhHH---HHHHHhhccccccchhhhh
Q 036275          227 EDQIEQVTT--LVRTMHKDMKTALPI---YFNLYGEKGVARSNLGQYI  269 (271)
Q Consensus       227 ~g~~~~a~~--~~~~~~~~~~~~~~~---~~~~~~~~G~~~~a~~~~~  269 (271)
                      .|+..-+..  ++.++.+-++.....   +-..+.+.|+.+.|.+=|.
T Consensus       731 ~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~  778 (799)
T KOG4162|consen  731 LGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQ  778 (799)
T ss_pred             hCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHH
Confidence            898887777  888888877666554   4556899999998877653

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.10  E-value=0.0013  Score=54.22  Aligned_cols=144  Identities=8%  Similarity=0.070  Sum_probs=88.0

Q ss_pred             cCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHhchhCCCCC-CHHHHHHHHHHHHhcCCHHHHHH
Q 036275          122 LGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP-DVVTWTSRLAAYSRKKLYRRCLE  200 (271)
Q Consensus       122 ~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~-~~~~~~~li~~~~~~g~~~~a~~  200 (271)
                      .+++..|..+-+...+.. +.++..+-.-...+...|+.++|.-.|+.....  .| +...|.-|+.+|...|.+.+|.-
T Consensus       313 ~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~L--ap~rL~~Y~GL~hsYLA~~~~kEA~~  389 (564)
T KOG1174|consen  313 EKKFERALNFVEKCIDSE-PRNHEALILKGRLLIALERHTQAVIAFRTAQML--APYRLEIYRGLFHSYLAQKRFKEANA  389 (564)
T ss_pred             hhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhccchHHHHHHHHHHHhc--chhhHHHHHHHHHHHHhhchHHHHHH
Confidence            344445555544444432 334555555566778889999999999987654  33 56899999999999999888765


Q ss_pred             HHHHHHHC----------------------------------CCCCCH-HHHHHHHHHHhccCcHHHHHHHHHHHHhccc
Q 036275          201 IFEEMIDA----------------------------------GCYPDG-GTAKVLISACSSEDQIEQVTTLVRTMHKDMK  245 (271)
Q Consensus       201 ~~~~m~~~----------------------------------~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~  245 (271)
                      +-++....                                  .+.|+. .....+...|...|....+..++++......
T Consensus       390 ~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~  469 (564)
T KOG1174|consen  390 LANWTIRLFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFP  469 (564)
T ss_pred             HHHHHHHHhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhcc
Confidence            54432211                                  112332 2344455556666666666666666655443


Q ss_pred             ch--hHHHHHHHhhccccccchhhh
Q 036275          246 TA--LPIYFNLYGEKGVARSNLGQY  268 (271)
Q Consensus       246 ~~--~~~~~~~~~~~G~~~~a~~~~  268 (271)
                      ..  ...+-+.+.-...+++|.+.|
T Consensus       470 D~~LH~~Lgd~~~A~Ne~Q~am~~y  494 (564)
T KOG1174|consen  470 DVNLHNHLGDIMRAQNEPQKAMEYY  494 (564)
T ss_pred             ccHHHHHHHHHHHHhhhHHHHHHHH
Confidence            33  344555666666666666655

>KOG2047 consensus mRNA splicing factor [RNA processing and modification]

Probab=98.09  E-value=0.004  Score=54.17  Aligned_cols=220  Identities=12%  Similarity=0.108  Sum_probs=141.3

Q ss_pred             chHHHHHH--hcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC----------------------ChHHHHHHHHH
Q 036275           44 PNLFVFIF--SIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTG----------------------NVAKCEGVINQ   99 (271)
Q Consensus        44 y~~ll~~~--~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~----------------------~~~~a~~~~~~   99 (271)
                      |.+|...|  .|.++.|.++|++..+.  ..+...|..+.++|++-.                      +++..+.-|+.
T Consensus       251 w~SLAdYYIr~g~~ekarDvyeeai~~--v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~  328 (835)
T KOG2047|consen  251 WCSLADYYIRSGLFEKARDVYEEAIQT--VMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFES  328 (835)
T ss_pred             HHHHHHHHHHhhhhHHHHHHHHHHHHh--heehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHH
Confidence            99999999  99999999999998775  346666777777765321                      12233344444


Q ss_pred             HHHCC-----------CCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCC------ChhhHHHHHHHHHcCCCHHH
Q 036275          100 MHKSG-----------LKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAA------DISTYNILINIYGRGGFIEK  162 (271)
Q Consensus       100 m~~~~-----------~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~------~~~~~~~li~~~~~~g~~~~  162 (271)
                      +...+           -+-++..|..-+..  ..|+..+....+.+..+. +.|      -...|..+...|-..|+++.
T Consensus       329 lm~rr~~~lNsVlLRQn~~nV~eW~kRV~l--~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~  405 (835)
T KOG2047|consen  329 LMNRRPLLLNSVLLRQNPHNVEEWHKRVKL--YEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDD  405 (835)
T ss_pred             HHhccchHHHHHHHhcCCccHHHHHhhhhh--hcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHH
Confidence            44331           11133444444333  456677778888887764 233      23567788889999999999


Q ss_pred             HHHHHHhchhCCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-----------------CCHHHHHHHHH
Q 036275          163 MEGLFQSLPAKRLKPD---VVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCY-----------------PDGGTAKVLIS  222 (271)
Q Consensus       163 a~~~~~~m~~~g~~~~---~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~-----------------p~~~~~~~l~~  222 (271)
                      |..+|++..+-..+--   ..+|......=.+..+++.|.++++......-.                 -+...|...++
T Consensus       406 aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~D  485 (835)
T KOG2047|consen  406 ARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYAD  485 (835)
T ss_pred             HHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHH
Confidence            9999999887543221   245555556666788888898888765432111                 12234555566


Q ss_pred             HHhccCcHHHHHHHHHHHHhcccchhHHHHH---HHhhccccccchhhh
Q 036275          223 ACSSEDQIEQVTTLVRTMHKDMKTALPIYFN---LYGEKGVARSNLGQY  268 (271)
Q Consensus       223 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~---~~~~~G~~~~a~~~~  268 (271)
                      .-...|-++....+++++.+-...++...++   .+..+..+.++.+.|
T Consensus       486 leEs~gtfestk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~Y  534 (835)
T KOG2047|consen  486 LEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAY  534 (835)
T ss_pred             HHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHH
Confidence            6666788888889999888776666555444   244555555555544

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=98.09  E-value=9.1e-05  Score=48.10  Aligned_cols=91  Identities=19%  Similarity=0.242  Sum_probs=43.0

Q ss_pred             HHHHHHHccCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcC
Q 036275          114 SMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKK  193 (271)
Q Consensus       114 ~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g  193 (271)
                      .+...+...|++++|...+++..+.. +.+...+..+...+...|++++|.+.++...... +.+..++..+...+...|
T Consensus         5 ~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~   82 (100)
T cd00189           5 NLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYYKLG   82 (100)
T ss_pred             HHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHHHH
Confidence            34444455555555555555554432 2223444445555555555555555555544332 112234444444555555


Q ss_pred             CHHHHHHHHHHHH
Q 036275          194 LYRRCLEIFEEMI  206 (271)
Q Consensus       194 ~~~~a~~~~~~m~  206 (271)
                      +.++|...+....
T Consensus        83 ~~~~a~~~~~~~~   95 (100)
T cd00189          83 KYEEALEAYEKAL   95 (100)
T ss_pred             hHHHHHHHHHHHH
Confidence            5555555554443

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=98.08  E-value=0.00017  Score=49.72  Aligned_cols=104  Identities=12%  Similarity=-0.015  Sum_probs=82.0

Q ss_pred             hhHHHHHHHHHcCCCHHHHHHHHHhchhCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC--CCCCHHHHHHH
Q 036275          145 STYNILINIYGRGGFIEKMEGLFQSLPAKRL--KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAG--CYPDGGTAKVL  220 (271)
Q Consensus       145 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~--~~p~~~~~~~l  220 (271)
                      .++..+...+.+.|++++|.+.|..+.....  ......+..+..++...|++++|...++.+....  .......+..+
T Consensus         3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~   82 (119)
T TIGR02795         3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKL   82 (119)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHH
Confidence            4566788889999999999999999986521  1124567778999999999999999999988642  11124567777


Q ss_pred             HHHHhccCcHHHHHHHHHHHHhcccchh
Q 036275          221 ISACSSEDQIEQVTTLVRTMHKDMKTAL  248 (271)
Q Consensus       221 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~  248 (271)
                      ..++...|+.++|...++++.+..+...
T Consensus        83 ~~~~~~~~~~~~A~~~~~~~~~~~p~~~  110 (119)
T TIGR02795        83 GMSLQELGDKEKAKATLQQVIKRYPGSS  110 (119)
T ss_pred             HHHHHHhCChHHHHHHHHHHHHHCcCCh
Confidence            8889999999999999999988766543

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=98.08  E-value=9.4e-05  Score=48.03  Aligned_cols=94  Identities=15%  Similarity=0.112  Sum_probs=54.7

Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHc
Q 036275           77 HMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGR  156 (271)
Q Consensus        77 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~  156 (271)
                      +..+...+...|++++|..++++..+.. +.+...+..+...+...+++++|.+.++...+.. +.+..++..+...+..
T Consensus         3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~   80 (100)
T cd00189           3 LLNLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYYK   80 (100)
T ss_pred             HHHHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHH
Confidence            3445555556666666666666665543 1233445556666666666666666666665542 3334455666666666


Q ss_pred             CCCHHHHHHHHHhchh
Q 036275          157 GGFIEKMEGLFQSLPA  172 (271)
Q Consensus       157 ~g~~~~a~~~~~~m~~  172 (271)
                      .|++++|...+.....
T Consensus        81 ~~~~~~a~~~~~~~~~   96 (100)
T cd00189          81 LGKYEEALEAYEKALE   96 (100)
T ss_pred             HHhHHHHHHHHHHHHc
Confidence            6666666666665543

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=98.07  E-value=0.00049  Score=62.95  Aligned_cols=190  Identities=9%  Similarity=0.031  Sum_probs=124.4

Q ss_pred             CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHccCCHhHHHHH------------------
Q 036275           71 TPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTF-VINSMLNLYGRLGQFEKMEEV------------------  131 (271)
Q Consensus        71 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~-~~~~li~~~~~~g~~~~a~~~------------------  131 (271)
                      +.+...+..|+..+...+++++|.++.+...+.  .|+.. .|-.+...+.+.++.+.+..+                  
T Consensus        28 p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~--~P~~i~~yy~~G~l~~q~~~~~~~~lv~~l~~~~~~~~~~~ve~~  105 (906)
T PRK14720         28 LSKFKELDDLIDAYKSENLTDEAKDICEEHLKE--HKKSISALYISGILSLSRRPLNDSNLLNLIDSFSQNLKWAIVEHI  105 (906)
T ss_pred             cchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCcceehHHHHHHHHHhhcchhhhhhhhhhhhcccccchhHHHHH
Confidence            346788899999999999999999999877765  33332 233333356666655555444                  


Q ss_pred             HHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 036275          132 LTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCY  211 (271)
Q Consensus       132 ~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~  211 (271)
                      ...|.+.  .-+...+..+..+|-+.|+.++|..+++++.+.. .-|..+.|.+...|... +.++|.+++.+.+..-+ 
T Consensus       106 ~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~~i-  180 (906)
T PRK14720        106 CDKILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYLKKAIYRFI-  180 (906)
T ss_pred             HHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHH-
Confidence            2222221  1233577788889999999999999999999876 34678899999999999 99999999988765411 


Q ss_pred             CCHHHHHHHHH----HH-hccCcHHHHHHHHHHHHhcc-----cchhHHHHHHHhhccccccchhhh
Q 036275          212 PDGGTAKVLIS----AC-SSEDQIEQVTTLVRTMHKDM-----KTALPIYFNLYGEKGVARSNLGQY  268 (271)
Q Consensus       212 p~~~~~~~l~~----~~-~~~g~~~~a~~~~~~~~~~~-----~~~~~~~~~~~~~~G~~~~a~~~~  268 (271)
                       +..-|+.+..    .| ....+++...++.+.+...-     .....-+++.|.+..+++++++.+
T Consensus       181 -~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iL  246 (906)
T PRK14720        181 -KKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYIL  246 (906)
T ss_pred             -hhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHH
Confidence             1111221111    11 23344555555655555431     223344567788888787777655

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=98.06  E-value=0.00038  Score=51.66  Aligned_cols=91  Identities=15%  Similarity=0.109  Sum_probs=63.3

Q ss_pred             CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChhhHHHH
Q 036275           73 TMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPD--TFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNIL  150 (271)
Q Consensus        73 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l  150 (271)
                      ....+..+...+...|++++|...|++..+....+.  ...+..+...+.+.|++++|...+++..+.. +.+...+..+
T Consensus        34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l  112 (172)
T PRK02603         34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-PKQPSALNNI  112 (172)
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHH
Confidence            445566777777788888888888888776543322  3567777888888888888888888877752 3346666677


Q ss_pred             HHHHHcCCCHHHHH
Q 036275          151 INIYGRGGFIEKME  164 (271)
Q Consensus       151 i~~~~~~g~~~~a~  164 (271)
                      ...+...|+...+.
T Consensus       113 g~~~~~~g~~~~a~  126 (172)
T PRK02603        113 AVIYHKRGEKAEEA  126 (172)
T ss_pred             HHHHHHcCChHhHh
Confidence            77777777654433

>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses

Probab=98.06  E-value=0.00018  Score=54.09  Aligned_cols=87  Identities=22%  Similarity=0.358  Sum_probs=48.5

Q ss_pred             CHHHHHHHHHHHHhc-----CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc----------------CCHhHHHHH
Q 036275           73 TMKSHMLLLTAYSKT-----GNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRL----------------GQFEKMEEV  131 (271)
Q Consensus        73 ~~~~~~~li~~~~~~-----~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~----------------g~~~~a~~~  131 (271)
                      +-.+|..++..|.+.     |.++-....++.|.+-|+.-|..+|+.|++.+=+.                .+.+-|+++
T Consensus        46 ~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i~l  125 (228)
T PF06239_consen   46 DKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAIDL  125 (228)
T ss_pred             cHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHHHH
Confidence            444455555544432     44555555555566666666666666666554431                123456666


Q ss_pred             HHHHHhCCCCCChhhHHHHHHHHHcCCC
Q 036275          132 LTAMEKGSYAADISTYNILINIYGRGGF  159 (271)
Q Consensus       132 ~~~m~~~~~~~~~~~~~~li~~~~~~g~  159 (271)
                      +++|...|+-||..++..+++.|++.+.
T Consensus       126 L~qME~~gV~Pd~Et~~~ll~iFG~~s~  153 (228)
T PF06239_consen  126 LEQMENNGVMPDKETEQMLLNIFGRKSH  153 (228)
T ss_pred             HHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence            6666666666666666666666665554

ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=98.05  E-value=0.0021  Score=50.52  Aligned_cols=178  Identities=10%  Similarity=0.048  Sum_probs=98.4

Q ss_pred             chHHHHHH-hcCHHHHHHHHHHHHHcCCCCCHHHH---HHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 036275           44 PNLFVFIF-SIYFSDAHAVFEEMKRLGITPTMKSH---MLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLY  119 (271)
Q Consensus        44 y~~ll~~~-~g~~~~A~~~~~~~~~~~~~~~~~~~---~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~  119 (271)
                      |..-...+ .|++++|.+.|+.+.... |-+...-   -.+..++.+.+++++|...+++..+....-...-+...+.+.
T Consensus        36 Y~~A~~~~~~g~y~~Ai~~f~~l~~~y-P~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~  114 (243)
T PRK10866         36 YATAQQKLQDGNWKQAITQLEALDNRY-PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGL  114 (243)
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHH
Confidence            55555666 778888888887776653 2222222   345566677777888888877777663221122232333332


Q ss_pred             Hc--cC---------------CH---hHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHhchhCCCCCCH
Q 036275          120 GR--LG---------------QF---EKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDV  179 (271)
Q Consensus       120 ~~--~g---------------~~---~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~  179 (271)
                      +.  .+               |.   .+|+..|+.+.+               -|=.+.-..+|..-+..+...    =.
T Consensus       115 ~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~---------------~yP~S~ya~~A~~rl~~l~~~----la  175 (243)
T PRK10866        115 TNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVR---------------GYPNSQYTTDATKRLVFLKDR----LA  175 (243)
T ss_pred             hhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHH---------------HCcCChhHHHHHHHHHHHHHH----HH
Confidence            21  11               11   123333333333               333333344454444444321    01


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHH
Q 036275          180 VTWTSRLAAYSRKKLYRRCLEIFEEMIDA--GCYPDGGTAKVLISACSSEDQIEQVTTLVRTMH  241 (271)
Q Consensus       180 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~--~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~  241 (271)
                      ..--.+.+-|.+.|.+..|..-++.+++.  +.+........++.++...|..++|..+...+.
T Consensus       176 ~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~  239 (243)
T PRK10866        176 KYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA  239 (243)
T ss_pred             HHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence            11124455577888888888888888763  333445667777888888888888888776554

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.05  E-value=0.00012  Score=57.63  Aligned_cols=161  Identities=11%  Similarity=0.051  Sum_probs=95.2

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCC-------------
Q 036275           76 SHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAA-------------  142 (271)
Q Consensus        76 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~-------------  142 (271)
                      +.+...-...+.|+.+.|.+-|+...+-+.-.....|+..+.. .+.|+.+.|.++..++.++|+..             
T Consensus       146 ~~in~gCllykegqyEaAvqkFqaAlqvsGyqpllAYniALaH-y~~~qyasALk~iSEIieRG~r~HPElgIGm~tegi  224 (459)
T KOG4340|consen  146 GQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLALAH-YSSRQYASALKHISEIIERGIRQHPELGIGMTTEGI  224 (459)
T ss_pred             hhccchheeeccccHHHHHHHHHHHHhhcCCCchhHHHHHHHH-HhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccC
Confidence            3333333445678888888888777765444355567665544 46677888888888887766421             


Q ss_pred             Ch---------------hhHHHHHHHHHcCCCHHHHHHHHHhchhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 036275          143 DI---------------STYNILINIYGRGGFIEKMEGLFQSLPAK-RLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMI  206 (271)
Q Consensus       143 ~~---------------~~~~~li~~~~~~g~~~~a~~~~~~m~~~-g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~  206 (271)
                      |+               ..+|.-...+.+.|+++.|.+.+..|.-. ....|++|...+.-.- -.+++.+..+-+.-++
T Consensus       225 DvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL  303 (459)
T KOG4340|consen  225 DVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLL  303 (459)
T ss_pred             chhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHH
Confidence            11               11233333456778888888888887632 2345666666554332 2234444444444444


Q ss_pred             HCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHH
Q 036275          207 DAGCYPDGGTAKVLISACSSEDQIEQVTTLVRT  239 (271)
Q Consensus       207 ~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~  239 (271)
                      +.+ +....||..++-.|++..-++.|-+++-+
T Consensus       304 ~~n-PfP~ETFANlLllyCKNeyf~lAADvLAE  335 (459)
T KOG4340|consen  304 QQN-PFPPETFANLLLLYCKNEYFDLAADVLAE  335 (459)
T ss_pred             hcC-CCChHHHHHHHHHHhhhHHHhHHHHHHhh
Confidence            443 23456777777777777777766665543

>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses

Probab=98.04  E-value=0.00019  Score=54.02  Aligned_cols=105  Identities=17%  Similarity=0.396  Sum_probs=67.8

Q ss_pred             CCCHHHHHHHHHHHHcc-----CCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHhchhCCCCCCHH
Q 036275          106 KPDTFVINSMLNLYGRL-----GQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVV  180 (271)
Q Consensus       106 ~~~~~~~~~li~~~~~~-----g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~  180 (271)
                      ..|..+|..+++.|.+.     |..+-....+..|.+-|+..|..+|+.|++.+=+ |.+-               |. .
T Consensus        44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv---------------p~-n  106 (228)
T PF06239_consen   44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV---------------PR-N  106 (228)
T ss_pred             cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc---------------cc-c
Confidence            55888899999988754     6777778888899999999999999999998765 3221               11 1


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCc
Q 036275          181 TWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQ  229 (271)
Q Consensus       181 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~  229 (271)
                      .+..+...|-  .+-+-|.+++++|...|+-||.+|+..+++.+.+.+.
T Consensus       107 ~fQ~~F~hyp--~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~  153 (228)
T PF06239_consen  107 FFQAEFMHYP--RQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH  153 (228)
T ss_pred             HHHHHhccCc--HHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence            1111111111  2334556666666666666666666666666655443

ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.03  E-value=0.001  Score=56.92  Aligned_cols=112  Identities=10%  Similarity=0.052  Sum_probs=79.6

Q ss_pred             hcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH--HccCCHhHHH
Q 036275           52 SIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLY--GRLGQFEKME  129 (271)
Q Consensus        52 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~--~~~g~~~~a~  129 (271)
                      .|++++|++...++...+ +-+...+..=+-+.++.+++++|+.+.+.-...  ..+...+  +=.+|  .+.+..|+|.
T Consensus        25 ~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~--~~~~~~~--fEKAYc~Yrlnk~Deal   99 (652)
T KOG2376|consen   25 NGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKNGAL--LVINSFF--FEKAYCEYRLNKLDEAL   99 (652)
T ss_pred             chHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchh--hhcchhh--HHHHHHHHHcccHHHHH
Confidence            899999999999998776 667778888888889999999998554332210  1111111  23333  4788999999


Q ss_pred             HHHHHHHhCCCCC-ChhhHHHHHHHHHcCCCHHHHHHHHHhchhC
Q 036275          130 EVLTAMEKGSYAA-DISTYNILINIYGRGGFIEKMEGLFQSLPAK  173 (271)
Q Consensus       130 ~~~~~m~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~  173 (271)
                      ..++     |..+ |..+...-...+.+.|++++|.++++.+.+.
T Consensus       100 k~~~-----~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn  139 (652)
T KOG2376|consen  100 KTLK-----GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKN  139 (652)
T ss_pred             HHHh-----cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence            8887     2333 3446666777888999999999999988655

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=98.01  E-value=0.00025  Score=57.01  Aligned_cols=133  Identities=16%  Similarity=0.166  Sum_probs=103.1

Q ss_pred             HHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChhhHHHHHHH-HHcCCCHHHHHHHHHhchhCCCCCCHHHHHHHHHH
Q 036275          110 FVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINI-YGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAA  188 (271)
Q Consensus       110 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~-~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~  188 (271)
                      .+|..+++..-+.+..+.|..+|.+..+.+ ..+..+|-..... |...++.+.|.++|+...+. ...+...|...+.-
T Consensus         2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~   79 (280)
T PF05843_consen    2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDF   79 (280)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHH
Confidence            468888999999999999999999998653 3345556555555 33367777799999998765 45577889999999


Q ss_pred             HHhcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHhccCcHHHHHHHHHHHHhcccc
Q 036275          189 YSRKKLYRRCLEIFEEMIDAGCYPDG----GTAKVLISACSSEDQIEQVTTLVRTMHKDMKT  246 (271)
Q Consensus       189 ~~~~g~~~~a~~~~~~m~~~~~~p~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~  246 (271)
                      +...++.+.|..+|++....  .|..    ..|...++.-.+.|+++.+..+.+++.+..+.
T Consensus        80 l~~~~d~~~aR~lfer~i~~--l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~  139 (280)
T PF05843_consen   80 LIKLNDINNARALFERAISS--LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPE  139 (280)
T ss_dssp             HHHTT-HHHHHHHHHHHCCT--SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTT
T ss_pred             HHHhCcHHHHHHHHHHHHHh--cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhh
Confidence            99999999999999998875  3333    48999999999999999999999998775433

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=98.00  E-value=0.00025  Score=50.84  Aligned_cols=83  Identities=8%  Similarity=-0.032  Sum_probs=38.1

Q ss_pred             hcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHhHHHHH
Q 036275           52 SIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEV  131 (271)
Q Consensus        52 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~  131 (271)
                      .|++++|.++|+.+...+ +-+..-|-.|..++-..|++++|+..|.......+ -|+..+-.+..++...|+.+.|.+.
T Consensus        48 ~G~l~~A~~~f~~L~~~D-p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~-ddp~~~~~ag~c~L~lG~~~~A~~a  125 (157)
T PRK15363         48 VKEFAGAARLFQLLTIYD-AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKI-DAPQAPWAAAECYLACDNVCYAIKA  125 (157)
T ss_pred             CCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCchHHHHHHHHHHHcCCHHHHHHH
Confidence            455555555554444443 23444444444444444555555555544444432 1334444444444444555554444


Q ss_pred             HHHHH
Q 036275          132 LTAME  136 (271)
Q Consensus       132 ~~~m~  136 (271)
                      |+...
T Consensus       126 F~~Ai  130 (157)
T PRK15363        126 LKAVV  130 (157)
T ss_pred             HHHHH
Confidence            44433

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=97.99  E-value=0.0003  Score=58.62  Aligned_cols=89  Identities=12%  Similarity=-0.019  Sum_probs=78.6

Q ss_pred             HHHH-hcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHh
Q 036275           48 VFIF-SIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFE  126 (271)
Q Consensus        48 l~~~-~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~  126 (271)
                      ..++ .|++++|++.|++..+.+ +.+...|..+..++.+.|++++|+..+++..+... .+...|..+..+|...|+++
T Consensus        10 ~~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P-~~~~a~~~lg~~~~~lg~~~   87 (356)
T PLN03088         10 KEAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIELDP-SLAKAYLRKGTACMKLEEYQ   87 (356)
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHhCCHH
Confidence            4555 999999999999999876 56888999999999999999999999999998752 36677888999999999999


Q ss_pred             HHHHHHHHHHhC
Q 036275          127 KMEEVLTAMEKG  138 (271)
Q Consensus       127 ~a~~~~~~m~~~  138 (271)
                      +|+..|++..+.
T Consensus        88 eA~~~~~~al~l   99 (356)
T PLN03088         88 TAKAALEKGASL   99 (356)
T ss_pred             HHHHHHHHHHHh
Confidence            999999999886

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=97.98  E-value=0.00062  Score=50.56  Aligned_cols=128  Identities=10%  Similarity=-0.035  Sum_probs=76.4

Q ss_pred             HHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCC--ChhhHHHHHHHHHcCCCHHHHHHHHHhchhCCCCCCHHHHHHHHH
Q 036275          110 FVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAA--DISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLA  187 (271)
Q Consensus       110 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~  187 (271)
                      ..+..+...+...|++++|...|++..+....+  ....+..+...+.+.|++++|...+++..... +-+...+..+..
T Consensus        36 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~  114 (172)
T PRK02603         36 FVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-PKQPSALNNIAV  114 (172)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHH
Confidence            446667777778888888888888877643222  13567777788888888888888888776642 113455666666


Q ss_pred             HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhcccchhHHHHHHHhhcc
Q 036275          188 AYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKDMKTALPIYFNLYGEKG  259 (271)
Q Consensus       188 ~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~G  259 (271)
                      .+...|+...+..-++...                     ..+++|.+++++..+.++.........+...|
T Consensus       115 ~~~~~g~~~~a~~~~~~A~---------------------~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~  165 (172)
T PRK02603        115 IYHKRGEKAEEAGDQDEAE---------------------ALFDKAAEYWKQAIRLAPNNYIEAQNWLKTTG  165 (172)
T ss_pred             HHHHcCChHhHhhCHHHHH---------------------HHHHHHHHHHHHHHhhCchhHHHHHHHHHhcC
Confidence            6666666444332222211                     11455556666655555554444444444444

>PRK04841 transcriptional regulator MalT; Provisional

Probab=97.98  E-value=0.0019  Score=60.83  Aligned_cols=156  Identities=7%  Similarity=-0.069  Sum_probs=97.6

Q ss_pred             hcCHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCC---CCC--HHHHHHHHHHHHcc
Q 036275           52 SIYFSDAHAVFEEMKRLGITPT----MKSHMLLLTAYSKTGNVAKCEGVINQMHKSGL---KPD--TFVINSMLNLYGRL  122 (271)
Q Consensus        52 ~g~~~~A~~~~~~~~~~~~~~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~---~~~--~~~~~~li~~~~~~  122 (271)
                      .|++++|...+++..+..-..+    ....+.+...+...|++++|...+++.....-   .+.  ......+...+...
T Consensus       465 ~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~  544 (903)
T PRK04841        465 DGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQ  544 (903)
T ss_pred             CCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHC
Confidence            8889999888888765311112    12345566667778899988888877764311   111  23445566677788


Q ss_pred             CCHhHHHHHHHHHHhC----CCC--C-ChhhHHHHHHHHHcCCCHHHHHHHHHhchhC--CCCC--CHHHHHHHHHHHHh
Q 036275          123 GQFEKMEEVLTAMEKG----SYA--A-DISTYNILINIYGRGGFIEKMEGLFQSLPAK--RLKP--DVVTWTSRLAAYSR  191 (271)
Q Consensus       123 g~~~~a~~~~~~m~~~----~~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--g~~~--~~~~~~~li~~~~~  191 (271)
                      |++++|...+++....    +..  + ....+..+...+...|++++|...+++....  ...+  ....+..+...+..
T Consensus       545 G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~  624 (903)
T PRK04841        545 GFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLA  624 (903)
T ss_pred             CCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHH
Confidence            9999888887775542    211  1 1233445566677778998888888876542  1112  12344445566778


Q ss_pred             cCCHHHHHHHHHHHHH
Q 036275          192 KKLYRRCLEIFEEMID  207 (271)
Q Consensus       192 ~g~~~~a~~~~~~m~~  207 (271)
                      .|++++|...+.....
T Consensus       625 ~G~~~~A~~~l~~a~~  640 (903)
T PRK04841        625 RGDLDNARRYLNRLEN  640 (903)
T ss_pred             cCCHHHHHHHHHHHHH
Confidence            8888888888777643

>PRK04841 transcriptional regulator MalT; Provisional

Probab=97.98  E-value=0.002  Score=60.71  Aligned_cols=217  Identities=11%  Similarity=0.092  Sum_probs=136.3

Q ss_pred             hcCHHHHHHHHHHHHHcCC---CC--CHHHHHHHHHHHHhcCChHHHHHHHHHHHHC----CCC--C-CHHHHHHHHHHH
Q 036275           52 SIYFSDAHAVFEEMKRLGI---TP--TMKSHMLLLTAYSKTGNVAKCEGVINQMHKS----GLK--P-DTFVINSMLNLY  119 (271)
Q Consensus        52 ~g~~~~A~~~~~~~~~~~~---~~--~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----~~~--~-~~~~~~~li~~~  119 (271)
                      .|++++|...+.+.....-   .+  ...++..+...+...|+++.|...+++....    +..  + ....+..+...+
T Consensus       504 ~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~  583 (903)
T PRK04841        504 KGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLL  583 (903)
T ss_pred             cCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHH
Confidence            9999999999988764311   11  1234556667788899999999998776542    221  1 223345566667


Q ss_pred             HccCCHhHHHHHHHHHHhC--CCCC--ChhhHHHHHHHHHcCCCHHHHHHHHHhchhCC--CCCCHH--HH--HHHHHHH
Q 036275          120 GRLGQFEKMEEVLTAMEKG--SYAA--DISTYNILINIYGRGGFIEKMEGLFQSLPAKR--LKPDVV--TW--TSRLAAY  189 (271)
Q Consensus       120 ~~~g~~~~a~~~~~~m~~~--~~~~--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g--~~~~~~--~~--~~li~~~  189 (271)
                      ...|++++|...+++....  ...+  ....+..+...+...|+.++|.+.+++.....  ......  ..  ...+..+
T Consensus       584 ~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~  663 (903)
T PRK04841        584 WEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYW  663 (903)
T ss_pred             HHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHH
Confidence            7889999999998876542  1112  23445556778889999999999988875321  111110  11  1122444


Q ss_pred             HhcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHhccCcHHHHHHHHHHHHhcc----cch-----hHHHHHHHhh
Q 036275          190 SRKKLYRRCLEIFEEMIDAGCYPD---GGTAKVLISACSSEDQIEQVTTLVRTMHKDM----KTA-----LPIYFNLYGE  257 (271)
Q Consensus       190 ~~~g~~~~a~~~~~~m~~~~~~p~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~----~~~-----~~~~~~~~~~  257 (271)
                      ...|+.+.|...+...........   ......+..++...|+.++|..++.+.....    ...     ...+-.+|..
T Consensus       664 ~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~  743 (903)
T PRK04841        664 QMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQ  743 (903)
T ss_pred             HHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHH
Confidence            567889998888777554221111   1113456667888899999999998876432    111     1223455788


Q ss_pred             ccccccchhhh
Q 036275          258 KGVARSNLGQY  268 (271)
Q Consensus       258 ~G~~~~a~~~~  268 (271)
                      .|+.++|...+
T Consensus       744 ~G~~~~A~~~L  754 (903)
T PRK04841        744 QGRKSEAQRVL  754 (903)
T ss_pred             cCCHHHHHHHH
Confidence            89888887654

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=97.97  E-value=0.00053  Score=50.67  Aligned_cols=63  Identities=8%  Similarity=-0.121  Sum_probs=32.0

Q ss_pred             HHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCC--ChhhHHHHHHHHHcCCCHHHHHHHHHhchh
Q 036275          110 FVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAA--DISTYNILINIYGRGGFIEKMEGLFQSLPA  172 (271)
Q Consensus       110 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  172 (271)
                      ..+..+...+...|++++|...|+......-.+  ...++..+...+...|++++|.+.+++...
T Consensus        36 ~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~  100 (168)
T CHL00033         36 FTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALE  100 (168)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            334455555555566666666555554431111  123455555555555555555555555544

>KOG3616 consensus Selective LIM binding factor [Transcription]

Probab=97.94  E-value=0.00057  Score=60.19  Aligned_cols=185  Identities=14%  Similarity=0.208  Sum_probs=89.9

Q ss_pred             hcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHhHHHHH
Q 036275           52 SIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEV  131 (271)
Q Consensus        52 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~  131 (271)
                      ..+|.+|+.+++.+..+.+  -+.-|..+...|+..|+++.|.++|-+.         ..++-.|.+|.+.|+|+.|.++
T Consensus       745 akew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe~ae~lf~e~---------~~~~dai~my~k~~kw~da~kl  813 (1636)
T KOG3616|consen  745 AKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFEIAEELFTEA---------DLFKDAIDMYGKAGKWEDAFKL  813 (1636)
T ss_pred             hhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHHHHHHHHHhc---------chhHHHHHHHhccccHHHHHHH
Confidence            4445555555555544321  2233444555555555555555554321         1233445555555555555555


Q ss_pred             HHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 036275          132 LTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCY  211 (271)
Q Consensus       132 ~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~  211 (271)
                      -++...  -..+.+.|-+-..-.-+.|++.+|++++-.+-    .|+     ..|..|-+.|..+...++..+..-   .
T Consensus       814 a~e~~~--~e~t~~~yiakaedldehgkf~eaeqlyiti~----~p~-----~aiqmydk~~~~ddmirlv~k~h~---d  879 (1636)
T KOG3616|consen  814 AEECHG--PEATISLYIAKAEDLDEHGKFAEAEQLYITIG----EPD-----KAIQMYDKHGLDDDMIRLVEKHHG---D  879 (1636)
T ss_pred             HHHhcC--chhHHHHHHHhHHhHHhhcchhhhhheeEEcc----Cch-----HHHHHHHhhCcchHHHHHHHHhCh---h
Confidence            433322  12334444444444445555555555443322    122     234455555555555554443221   1


Q ss_pred             CCHHHHHHHHHHHhccCcHHHHHHHHHHHHhcccchhHHHHHHHhhccccccchh
Q 036275          212 PDGGTAKVLISACSSEDQIEQVTTLVRTMHKDMKTALPIYFNLYGEKGVARSNLG  266 (271)
Q Consensus       212 p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~a~~  266 (271)
                      .-..|...+..-+...|++..|...|-+..     .+...+++|..+|.+.+|.+
T Consensus       880 ~l~dt~~~f~~e~e~~g~lkaae~~flea~-----d~kaavnmyk~s~lw~dayr  929 (1636)
T KOG3616|consen  880 HLHDTHKHFAKELEAEGDLKAAEEHFLEAG-----DFKAAVNMYKASELWEDAYR  929 (1636)
T ss_pred             hhhHHHHHHHHHHHhccChhHHHHHHHhhh-----hHHHHHHHhhhhhhHHHHHH
Confidence            112345556666667777777776665542     23455666666666666554

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=97.93  E-value=0.00023  Score=52.61  Aligned_cols=113  Identities=12%  Similarity=0.037  Sum_probs=73.3

Q ss_pred             HHHHHHHHHHHH-HcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHccCCHhHHHHH
Q 036275           55 FSDAHAVFEEMK-RLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKP--DTFVINSMLNLYGRLGQFEKMEEV  131 (271)
Q Consensus        55 ~~~A~~~~~~~~-~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~--~~~~~~~li~~~~~~g~~~~a~~~  131 (271)
                      +..+.+.+..+. ..+..-....|..+...+...|++++|+..|++.......+  ...++..+...+...|++++|++.
T Consensus        15 ~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~   94 (168)
T CHL00033         15 FTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEY   94 (168)
T ss_pred             cccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHH
Confidence            334444444443 22222235566777777888899999999998887663322  234678888888899999999999


Q ss_pred             HHHHHhCCCCCChhhHHHHHHHHH-------cCCCHHHHHHHHH
Q 036275          132 LTAMEKGSYAADISTYNILINIYG-------RGGFIEKMEGLFQ  168 (271)
Q Consensus       132 ~~~m~~~~~~~~~~~~~~li~~~~-------~~g~~~~a~~~~~  168 (271)
                      ++...... +....++..+...+.       ..|+++.|...++
T Consensus        95 ~~~Al~~~-~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~  137 (168)
T CHL00033         95 YFQALERN-PFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFD  137 (168)
T ss_pred             HHHHHHhC-cCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHH
Confidence            98887652 334556666666666       5556554444443

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=97.93  E-value=0.00049  Score=57.32  Aligned_cols=102  Identities=8%  Similarity=-0.054  Sum_probs=75.5

Q ss_pred             HHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCH
Q 036275           81 LTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFI  160 (271)
Q Consensus        81 i~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~  160 (271)
                      ...+...|++++|++.|++.++... -+...|..+..++.+.|++++|+..+++..+.. +.+...|..+..+|...|++
T Consensus         9 a~~a~~~~~~~~Ai~~~~~Al~~~P-~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg~~   86 (356)
T PLN03088          9 AKEAFVDDDFALAVDLYTQAIDLDP-NNAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLEEY   86 (356)
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCCH
Confidence            4456677888888888888887653 356677778888888888888888888887763 44567788888888888888


Q ss_pred             HHHHHHHHhchhCCCCCCHHHHHHHH
Q 036275          161 EKMEGLFQSLPAKRLKPDVVTWTSRL  186 (271)
Q Consensus       161 ~~a~~~~~~m~~~g~~~~~~~~~~li  186 (271)
                      ++|...|++..+.  .|+......++
T Consensus        87 ~eA~~~~~~al~l--~P~~~~~~~~l  110 (356)
T PLN03088         87 QTAKAALEKGASL--APGDSRFTKLI  110 (356)
T ss_pred             HHHHHHHHHHHHh--CCCCHHHHHHH
Confidence            8888888887765  34544444443

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=97.91  E-value=3.3e-05  Score=49.94  Aligned_cols=80  Identities=16%  Similarity=0.212  Sum_probs=39.9

Q ss_pred             cCHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHhHHHHH
Q 036275           53 IYFSDAHAVFEEMKRLGIT-PTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEV  131 (271)
Q Consensus        53 g~~~~A~~~~~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~  131 (271)
                      |+++.|+.+++++.+.... ++...+..+..++.+.|++++|..++++ .+.+. .+....-.+..++.+.|++++|+++
T Consensus         3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~-~~~~~~~l~a~~~~~l~~y~eAi~~   80 (84)
T PF12895_consen    3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDP-SNPDIHYLLARCLLKLGKYEEAIKA   80 (84)
T ss_dssp             T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHH-CHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred             ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCC-CCHHHHHHHHHHHHHhCCHHHHHHH
Confidence            5566666666666554311 1333344456666666666666666655 22111 1222333445556666666666666


Q ss_pred             HHH
Q 036275          132 LTA  134 (271)
Q Consensus       132 ~~~  134 (271)
                      +++
T Consensus        81 l~~   83 (84)
T PF12895_consen   81 LEK   83 (84)
T ss_dssp             HHH
T ss_pred             Hhc
Confidence            553

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=97.88  E-value=2.9e-05  Score=50.24  Aligned_cols=78  Identities=14%  Similarity=0.104  Sum_probs=32.7

Q ss_pred             CCHhHHHHHHHHHHhCCC-CCChhhHHHHHHHHHcCCCHHHHHHHHHhchhCCCCCC-HHHHHHHHHHHHhcCCHHHHHH
Q 036275          123 GQFEKMEEVLTAMEKGSY-AADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPD-VVTWTSRLAAYSRKKLYRRCLE  200 (271)
Q Consensus       123 g~~~~a~~~~~~m~~~~~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~-~~~~~~li~~~~~~g~~~~a~~  200 (271)
                      |+++.|+.+++++.+..- .++...+-.+..+|.+.|++++|..+++. ...  .|+ ......+.+++.+.|++++|.+
T Consensus         3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~--~~~~~~~~~l~a~~~~~l~~y~eAi~   79 (84)
T PF12895_consen    3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKL--DPSNPDIHYLLARCLLKLGKYEEAIK   79 (84)
T ss_dssp             T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTH--HHCHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred             ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCC--CCCCHHHHHHHHHHHHHhCCHHHHHH
Confidence            445555555555544321 01222333345555555555555555554 111  111 1222233444555555555555


Q ss_pred             HHH
Q 036275          201 IFE  203 (271)
Q Consensus       201 ~~~  203 (271)
                      +++
T Consensus        80 ~l~   82 (84)
T PF12895_consen   80 ALE   82 (84)
T ss_dssp             HHH
T ss_pred             HHh
Confidence            544

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=97.86  E-value=0.0018  Score=46.50  Aligned_cols=94  Identities=4%  Similarity=-0.058  Sum_probs=59.4

Q ss_pred             HHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHh
Q 036275          112 INSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSR  191 (271)
Q Consensus       112 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~  191 (271)
                      .-.+...+...|++++|.++|+-+.... +-+..-|-.|..++-..|++++|...|........ -|+..+-.+..++..
T Consensus        38 lY~~A~~ly~~G~l~~A~~~f~~L~~~D-p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~-ddp~~~~~ag~c~L~  115 (157)
T PRK15363         38 LYRYAMQLMEVKEFAGAARLFQLLTIYD-AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKI-DAPQAPWAAAECYLA  115 (157)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCchHHHHHHHHHHH
Confidence            3344455556677777777777666543 33455566666667777777777777776665542 355666666677777


Q ss_pred             cCCHHHHHHHHHHHHH
Q 036275          192 KKLYRRCLEIFEEMID  207 (271)
Q Consensus       192 ~g~~~~a~~~~~~m~~  207 (271)
                      .|+.+.|.+.|+....
T Consensus       116 lG~~~~A~~aF~~Ai~  131 (157)
T PRK15363        116 CDNVCYAIKALKAVVR  131 (157)
T ss_pred             cCCHHHHHHHHHHHHH
Confidence            7777777777766554

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=97.86  E-value=0.0012  Score=53.31  Aligned_cols=198  Identities=13%  Similarity=0.120  Sum_probs=124.3

Q ss_pred             chHHHHHH--hcCHHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHH----CCCCCCH--H
Q 036275           44 PNLFVFIF--SIYFSDAHAVFEEMKRL----GITP-TMKSHMLLLTAYSKTGNVAKCEGVINQMHK----SGLKPDT--F  110 (271)
Q Consensus        44 y~~ll~~~--~g~~~~A~~~~~~~~~~----~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~----~~~~~~~--~  110 (271)
                      |+.....|  .|++++|.+.|.+....    +-+. -...|.....+|.+ .++++|...+++..+    .| .|+.  .
T Consensus        38 y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~-~~~~~Ai~~~~~A~~~y~~~G-~~~~aA~  115 (282)
T PF14938_consen   38 YEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKK-GDPDEAIECYEKAIEIYREAG-RFSQAAK  115 (282)
T ss_dssp             HHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH-TTHHHHHHHHHHHHHHHHHCT--HHHHHH
T ss_pred             HHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh-hCHHHHHHHHHHHHHHHHhcC-cHHHHHH
Confidence            66677777  89999999988887432    2111 23345555555544 489999999987754    34 3333  4


Q ss_pred             HHHHHHHHHHcc-CCHhHHHHHHHHHHhC----CCCC-ChhhHHHHHHHHHcCCCHHHHHHHHHhchhCCC-----CCCH
Q 036275          111 VINSMLNLYGRL-GQFEKMEEVLTAMEKG----SYAA-DISTYNILINIYGRGGFIEKMEGLFQSLPAKRL-----KPDV  179 (271)
Q Consensus       111 ~~~~li~~~~~~-g~~~~a~~~~~~m~~~----~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~-----~~~~  179 (271)
                      .+..+...|-.. |++++|.+.|++..+.    +.+. -...+..+...+.+.|++++|.++|+++...-.     +.+.
T Consensus       116 ~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~  195 (282)
T PF14938_consen  116 CLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSA  195 (282)
T ss_dssp             HHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhH
Confidence            577888888888 9999999999887642    3111 145667788899999999999999998765422     2222


Q ss_pred             H-HHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCC--HHHHHHHHHHHhc--cCcHHHHHHHHHHHHhc
Q 036275          180 V-TWTSRLAAYSRKKLYRRCLEIFEEMIDA--GCYPD--GGTAKVLISACSS--EDQIEQVTTLVRTMHKD  243 (271)
Q Consensus       180 ~-~~~~li~~~~~~g~~~~a~~~~~~m~~~--~~~p~--~~~~~~l~~~~~~--~g~~~~a~~~~~~~~~~  243 (271)
                      . .|-..+-.+...||...|.+.+++....  ++..+  ......|+.++-.  ...++.+..-|+.+.+-
T Consensus       196 ~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D~e~f~~av~~~d~~~~l  266 (282)
T PF14938_consen  196 KEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEEGDVEAFTEAVAEYDSISRL  266 (282)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT-CCCHHHHCHHHTTSS--
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHcccCcc
Confidence            2 3344455677789999999999998754  33333  3456677777654  23344555555544433

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=97.82  E-value=0.00015  Score=44.68  Aligned_cols=62  Identities=18%  Similarity=0.312  Sum_probs=36.8

Q ss_pred             ccCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHhchhCCCCCCHHHHHHH
Q 036275          121 RLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSR  185 (271)
Q Consensus       121 ~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l  185 (271)
                      +.|++++|+++|+.+.+.. |-+...+..+..+|.+.|++++|.++++++...  .|+...|..+
T Consensus         3 ~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~--~~~~~~~~~l   64 (68)
T PF14559_consen    3 KQGDYDEAIELLEKALQRN-PDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ--DPDNPEYQQL   64 (68)
T ss_dssp             HTTHHHHHHHHHHHHHHHT-TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG--GTTHHHHHHH
T ss_pred             hccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCHHHHHHH
Confidence            4566666666666666552 335556666666666777777777777666655  3454444433

...

>KOG3616 consensus Selective LIM binding factor [Transcription]

Probab=97.81  E-value=0.0018  Score=57.17  Aligned_cols=79  Identities=15%  Similarity=0.270  Sum_probs=42.8

Q ss_pred             HHHHHccCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCCH
Q 036275          116 LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLY  195 (271)
Q Consensus       116 i~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~  195 (271)
                      +.+......|.+|+.+++.+...+  ....-|..+.+-|+..|+++.|+++|.+.-         .++..|..|.+.|+|
T Consensus       739 ieaai~akew~kai~ildniqdqk--~~s~yy~~iadhyan~~dfe~ae~lf~e~~---------~~~dai~my~k~~kw  807 (1636)
T KOG3616|consen  739 IEAAIGAKEWKKAISILDNIQDQK--TASGYYGEIADHYANKGDFEIAEELFTEAD---------LFKDAIDMYGKAGKW  807 (1636)
T ss_pred             HHHHhhhhhhhhhHhHHHHhhhhc--cccccchHHHHHhccchhHHHHHHHHHhcc---------hhHHHHHHHhccccH
Confidence            334445555666666666555542  233445555566666666666666665332         244455566666666


Q ss_pred             HHHHHHHHHH
Q 036275          196 RRCLEIFEEM  205 (271)
Q Consensus       196 ~~a~~~~~~m  205 (271)
                      +.|.++-.+.
T Consensus       808 ~da~kla~e~  817 (1636)
T KOG3616|consen  808 EDAFKLAEEC  817 (1636)
T ss_pred             HHHHHHHHHh
Confidence            6665554443

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=97.80  E-value=0.0024  Score=44.07  Aligned_cols=104  Identities=11%  Similarity=0.070  Sum_probs=51.4

Q ss_pred             HHHHHhcCChHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCC---ChhhHHHHHHHHH
Q 036275           81 LTAYSKTGNVAKCEGVINQMHKSGLKPDT--FVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAA---DISTYNILINIYG  155 (271)
Q Consensus        81 i~~~~~~~~~~~a~~~~~~m~~~~~~~~~--~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~---~~~~~~~li~~~~  155 (271)
                      ..++-..|+.++|+.+|++....|...+.  ..+-.+...+...|++++|..++++..... +.   +......+..++.
T Consensus         8 A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~-p~~~~~~~l~~f~Al~L~   86 (120)
T PF12688_consen    8 AWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEF-PDDELNAALRVFLALALY   86 (120)
T ss_pred             HHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCccccHHHHHHHHHHHH
Confidence            33444556666666666666665544331  233344555556666666666666555431 11   1122222333455


Q ss_pred             cCCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHH
Q 036275          156 RGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAY  189 (271)
Q Consensus       156 ~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~  189 (271)
                      ..|+.++|.+.+-.....    +...|..-|..|
T Consensus        87 ~~gr~~eAl~~~l~~la~----~~~~y~ra~~~y  116 (120)
T PF12688_consen   87 NLGRPKEALEWLLEALAE----TLPRYRRAIRFY  116 (120)
T ss_pred             HCCCHHHHHHHHHHHHHH----HHHHHHHHHHHH
Confidence            566666666665544432    333444444444

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=97.79  E-value=0.013  Score=47.43  Aligned_cols=196  Identities=10%  Similarity=-0.010  Sum_probs=143.8

Q ss_pred             chHHHHHH-hcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc
Q 036275           44 PNLFVFIF-SIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRL  122 (271)
Q Consensus        44 y~~ll~~~-~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~  122 (271)
                      -..++.++ .|+...|+.....+.+.. +-|+..|..-..+|...|++..|+.=++...+..-. +..++--+-..+...
T Consensus       159 ~~ql~s~~~~GD~~~ai~~i~~llEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~D-nTe~~ykis~L~Y~v  236 (504)
T KOG0624|consen  159 VQQLKSASGSGDCQNAIEMITHLLEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQD-NTEGHYKISQLLYTV  236 (504)
T ss_pred             HHHHHHHhcCCchhhHHHHHHHHHhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccc-chHHHHHHHHHHHhh
Confidence            34556666 999999999999998875 569999999999999999999998877777665433 555666777788899


Q ss_pred             CCHhHHHHHHHHHHhCCCCCChhhHHHH-------------HHHHHcCCCHHHHHHHHHhchhCCCCCCHH---HHHHHH
Q 036275          123 GQFEKMEEVLTAMEKGSYAADISTYNIL-------------INIYGRGGFIEKMEGLFQSLPAKRLKPDVV---TWTSRL  186 (271)
Q Consensus       123 g~~~~a~~~~~~m~~~~~~~~~~~~~~l-------------i~~~~~~g~~~~a~~~~~~m~~~g~~~~~~---~~~~li  186 (271)
                      |+.+.++....+-.+.  .||...+-..             +....+.++|.++.+..+...+........   .+..+-
T Consensus       237 gd~~~sL~~iRECLKl--dpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c  314 (504)
T KOG0624|consen  237 GDAENSLKEIRECLKL--DPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLC  314 (504)
T ss_pred             hhHHHHHHHHHHHHcc--CcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheee
Confidence            9999999888887774  5665432111             223456677777777777766653221122   344555


Q ss_pred             HHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHHHhccc
Q 036275          187 AAYSRKKLYRRCLEIFEEMIDAGCYPD-GGTAKVLISACSSEDQIEQVTTLVRTMHKDMK  245 (271)
Q Consensus       187 ~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~  245 (271)
                      .++...+++.+|.+...+.++.  .|| ..++.--..+|.-..++|.|..=|+...+-+.
T Consensus       315 ~C~~~d~~~~eAiqqC~evL~~--d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~  372 (504)
T KOG0624|consen  315 TCYREDEQFGEAIQQCKEVLDI--DPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNE  372 (504)
T ss_pred             ecccccCCHHHHHHHHHHHHhc--CchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCc
Confidence            6777889999999999988875  455 77777778888888888888888887765443

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=97.79  E-value=0.013  Score=47.43  Aligned_cols=211  Identities=14%  Similarity=0.130  Sum_probs=151.6

Q ss_pred             hcCHHHHHHHHHHHHHcCCCC--CHHHH------------HHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 036275           52 SIYFSDAHAVFEEMKRLGITP--TMKSH------------MLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN  117 (271)
Q Consensus        52 ~g~~~~A~~~~~~~~~~~~~~--~~~~~------------~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~  117 (271)
                      .|.+++|..=|+...++....  ....+            ...+..+...|+...|++....+++.. +.|...|..-..
T Consensus       119 ~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~-~Wda~l~~~Rak  197 (504)
T KOG0624|consen  119 QGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQ-PWDASLRQARAK  197 (504)
T ss_pred             cccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcC-cchhHHHHHHHH
Confidence            899999999999998775211  11111            233445667799999999999999875 557788888899


Q ss_pred             HHHccCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHhchhCCCCCCHHH----HHHH--------
Q 036275          118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVT----WTSR--------  185 (271)
Q Consensus       118 ~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~----~~~l--------  185 (271)
                      +|...|++..|+.=+....+.. ..++.++--+-..+..-|+.+.++...++..+.  .||...    |..|        
T Consensus       198 c~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKl--dpdHK~Cf~~YKklkKv~K~le  274 (504)
T KOG0624|consen  198 CYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECLKL--DPDHKLCFPFYKKLKKVVKSLE  274 (504)
T ss_pred             HHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHcc--CcchhhHHHHHHHHHHHHHHHH
Confidence            9999999999987777666553 345666777888889999999999999988775  455432    2222        


Q ss_pred             -HHHHHhcCCHHHHHHHHHHHHHCCCCCC-----HHHHHHHHHHHhccCcHHHHHHHHHHHHhcccchhHHH---HHHHh
Q 036275          186 -LAAYSRKKLYRRCLEIFEEMIDAGCYPD-----GGTAKVLISACSSEDQIEQVTTLVRTMHKDMKTALPIY---FNLYG  256 (271)
Q Consensus       186 -i~~~~~~g~~~~a~~~~~~m~~~~~~p~-----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~---~~~~~  256 (271)
                       +....+.++|.++.+..+...+..  |.     ...+..+-.++...+++.+|++...+..+..+....++   .++|.
T Consensus       275 s~e~~ie~~~~t~cle~ge~vlk~e--p~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l  352 (504)
T KOG0624|consen  275 SAEQAIEEKHWTECLEAGEKVLKNE--PEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYL  352 (504)
T ss_pred             HHHHHHhhhhHHHHHHHHHHHHhcC--CcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHh
Confidence             223456788888888888777653  33     23455566677888999999999999988777655554   34566


Q ss_pred             hccccccchhhh
Q 036275          257 EKGVARSNLGQY  268 (271)
Q Consensus       257 ~~G~~~~a~~~~  268 (271)
                      ---.+++|+.-|
T Consensus       353 ~dE~YD~AI~dy  364 (504)
T KOG0624|consen  353 GDEMYDDAIHDY  364 (504)
T ss_pred             hhHHHHHHHHHH
Confidence            666666666554

>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=97.79  E-value=0.012  Score=48.20  Aligned_cols=107  Identities=13%  Similarity=0.103  Sum_probs=86.1

Q ss_pred             hhHHHHHHHHHcCCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 036275          145 STYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISAC  224 (271)
Q Consensus       145 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~  224 (271)
                      .+.+..|.-+...|+...|.++-.+..    .|+..-|...+++++..++|++..++...   .. .  +.-|..++.+|
T Consensus       178 ~Sl~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s---kK-s--PIGyepFv~~~  247 (319)
T PF04840_consen  178 LSLNDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS---KK-S--PIGYEPFVEAC  247 (319)
T ss_pred             CCHHHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC---CC-C--CCChHHHHHHH
Confidence            355666777888999999999987775    36889999999999999999988776432   22 2  35688899999


Q ss_pred             hccCcHHHHHHHHHHHHhcccchhHHHHHHHhhccccccchhh
Q 036275          225 SSEDQIEQVTTLVRTMHKDMKTALPIYFNLYGEKGVARSNLGQ  267 (271)
Q Consensus       225 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~a~~~  267 (271)
                      .+.|...+|..++.+      .+...-+.+|.++|.+.+|.+.
T Consensus       248 ~~~~~~~eA~~yI~k------~~~~~rv~~y~~~~~~~~A~~~  284 (319)
T PF04840_consen  248 LKYGNKKEASKYIPK------IPDEERVEMYLKCGDYKEAAQE  284 (319)
T ss_pred             HHCCCHHHHHHHHHh------CChHHHHHHHHHCCCHHHHHHH
Confidence            999999999999888      2337788999999999998765

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=97.76  E-value=0.0046  Score=47.23  Aligned_cols=179  Identities=14%  Similarity=0.112  Sum_probs=84.3

Q ss_pred             chHHHHHH-hcCHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 036275           44 PNLFVFIF-SIYFSDAHAVFEEMKRLG--ITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYG  120 (271)
Q Consensus        44 y~~ll~~~-~g~~~~A~~~~~~~~~~~--~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~  120 (271)
                      |..-...+ .|++++|.+.|+.+....  .+-.....-.++.++.+.|+++.|...+++..+....-...-+...+.+.+
T Consensus         9 Y~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~   88 (203)
T PF13525_consen    9 YQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLS   88 (203)
T ss_dssp             HHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHH
Confidence            66666677 888888888888887652  222344555677777788888888888887776522111111222222221


Q ss_pred             ccCCHhHHHHHHHHHHhCCC---CCChhhHHHHHHHHHcCCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 036275          121 RLGQFEKMEEVLTAMEKGSY---AADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRR  197 (271)
Q Consensus       121 ~~g~~~~a~~~~~~m~~~~~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~  197 (271)
                      .........     ......   ..-...+..++.-|=.+....+|...+..+...    =...--.+.+-|.+.|.+..
T Consensus        89 ~~~~~~~~~-----~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~----la~~e~~ia~~Y~~~~~y~a  159 (203)
T PF13525_consen   89 YYKQIPGIL-----RSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNR----LAEHELYIARFYYKRGKYKA  159 (203)
T ss_dssp             HHHHHHHHH------TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHH----HHHHHHHHHHHHHCTT-HHH
T ss_pred             HHHhCccch-----hcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHcccHHH
Confidence            111111110     000000   001223344444444455555555555444432    01111223455666667777


Q ss_pred             HHHHHHHHHHCCCCCCH----HHHHHHHHHHhccCcHHHH
Q 036275          198 CLEIFEEMIDAGCYPDG----GTAKVLISACSSEDQIEQV  233 (271)
Q Consensus       198 a~~~~~~m~~~~~~p~~----~~~~~l~~~~~~~g~~~~a  233 (271)
                      |..-++.+++.  -|+.    .....++.++.+.|..+.+
T Consensus       160 A~~r~~~v~~~--yp~t~~~~~al~~l~~~y~~l~~~~~a  197 (203)
T PF13525_consen  160 AIIRFQYVIEN--YPDTPAAEEALARLAEAYYKLGLKQAA  197 (203)
T ss_dssp             HHHHHHHHHHH--STTSHHHHHHHHHHHHHHHHTT-HHHH
T ss_pred             HHHHHHHHHHH--CCCCchHHHHHHHHHHHHHHhCChHHH
Confidence            76666666653  2222    3345556666666665533

>KOG2047 consensus mRNA splicing factor [RNA processing and modification]

Probab=97.76  E-value=0.024  Score=49.62  Aligned_cols=198  Identities=14%  Similarity=0.168  Sum_probs=128.4

Q ss_pred             chHHHHHH--hcCHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCC-----------CC
Q 036275           44 PNLFVFIF--SIYFSDAHAVFEEMKRLGITPT---MKSHMLLLTAYSKTGNVAKCEGVINQMHKSGL-----------KP  107 (271)
Q Consensus        44 y~~ll~~~--~g~~~~A~~~~~~~~~~~~~~~---~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~-----------~~  107 (271)
                      |-.+...|  .|+++.|..+|++..+...+--   ..+|......=.++.+++.|+++.++....--           ++
T Consensus       390 w~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pv  469 (835)
T KOG2047|consen  390 WVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPV  469 (835)
T ss_pred             HHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcH
Confidence            77777888  9999999999999887654432   45565556666677888889888877653211           11


Q ss_pred             ------CHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHhchhCCCCCCH-H
Q 036275          108 ------DTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDV-V  180 (271)
Q Consensus       108 ------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~-~  180 (271)
                            +...|...++.--..|-++....+++.+.+..+. ++...-.....+-...-++++.+++++=...=-.|+. .
T Consensus       470 Q~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLria-TPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~d  548 (835)
T KOG2047|consen  470 QARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIA-TPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYD  548 (835)
T ss_pred             HHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHH
Confidence                  2344556666666778888888899988876542 3333333444455666788888888875443223443 3


Q ss_pred             HHHHHHHHHHh---cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH--HhccCcHHHHHHHHHHHHhc
Q 036275          181 TWTSRLAAYSR---KKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA--CSSEDQIEQVTTLVRTMHKD  243 (271)
Q Consensus       181 ~~~~li~~~~~---~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~--~~~~g~~~~a~~~~~~~~~~  243 (271)
                      .|+..+.-+.+   ...++.|..+|++.++ |++|...-+..|+-+  -...|....|..++++....
T Consensus       549 iW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~  615 (835)
T KOG2047|consen  549 IWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSA  615 (835)
T ss_pred             HHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhc
Confidence            55555544432   3467889999999888 677665433333322  23457788888888886543

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=97.73  E-value=0.0042  Score=54.27  Aligned_cols=143  Identities=13%  Similarity=0.069  Sum_probs=84.8

Q ss_pred             CCCCCHHHHHHHHHHHHhc-----CChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHccC--------CHhHHHHHHHH
Q 036275           69 GITPTMKSHMLLLTAYSKT-----GNVAKCEGVINQMHKSGLKPDT-FVINSMLNLYGRLG--------QFEKMEEVLTA  134 (271)
Q Consensus        69 ~~~~~~~~~~~li~~~~~~-----~~~~~a~~~~~~m~~~~~~~~~-~~~~~li~~~~~~g--------~~~~a~~~~~~  134 (271)
                      ..+.+...|...+.+....     +..+.|..+|++..+.  .|+- ..|..+..++....        +...+.+..+.
T Consensus       332 ~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l--dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~  409 (517)
T PRK10153        332 GLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKS--EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDN  409 (517)
T ss_pred             cCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHH
Confidence            4466778888877775543     2266788888888876  4443 33443333332211        12223333333


Q ss_pred             HHhC-CCCCChhhHHHHHHHHHcCCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 036275          135 MEKG-SYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPD  213 (271)
Q Consensus       135 m~~~-~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~  213 (271)
                      .... ..+.+...|.++.-.....|++++|...+++....  .|+...|..+...+...|+.++|...+++....  .|.
T Consensus       410 a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L--~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L--~P~  485 (517)
T PRK10153        410 IVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDL--EMSWLNYVLLGKVYELKGDNRLAADAYSTAFNL--RPG  485 (517)
T ss_pred             hhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCC
Confidence            2221 12334566666666666677888888888877766  356777777777778888888888877776654  344


Q ss_pred             HHHH
Q 036275          214 GGTA  217 (271)
Q Consensus       214 ~~~~  217 (271)
                      ..||
T Consensus       486 ~pt~  489 (517)
T PRK10153        486 ENTL  489 (517)
T ss_pred             CchH
Confidence            4443

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=97.68  E-value=0.00022  Score=43.90  Aligned_cols=51  Identities=18%  Similarity=0.315  Sum_probs=27.6

Q ss_pred             hcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 036275           52 SIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKS  103 (271)
Q Consensus        52 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~  103 (271)
                      .|++++|++.|+.+.+.. |-+...+..+..+|.+.|++++|..+++++...
T Consensus         4 ~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~   54 (68)
T PF14559_consen    4 QGDYDEAIELLEKALQRN-PDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ   54 (68)
T ss_dssp             TTHHHHHHHHHHHHHHHT-TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred             ccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            455555555555555543 335555555555555555555555555555554

...

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=97.67  E-value=0.0072  Score=52.87  Aligned_cols=141  Identities=10%  Similarity=-0.046  Sum_probs=101.9

Q ss_pred             CCCCCHHHHHHHHHHHHccC-----CHhHHHHHHHHHHhCCCCCC-hhhHHHHHHHHHcC--------CCHHHHHHHHHh
Q 036275          104 GLKPDTFVINSMLNLYGRLG-----QFEKMEEVLTAMEKGSYAAD-ISTYNILINIYGRG--------GFIEKMEGLFQS  169 (271)
Q Consensus       104 ~~~~~~~~~~~li~~~~~~g-----~~~~a~~~~~~m~~~~~~~~-~~~~~~li~~~~~~--------g~~~~a~~~~~~  169 (271)
                      +.+.+...|...+++.....     +.+.|..+|++..+.  .|+ ...|..+..++...        +++..+.+...+
T Consensus       332 ~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l--dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~  409 (517)
T PRK10153        332 GLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKS--EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDN  409 (517)
T ss_pred             cCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHH
Confidence            44567788999888855432     367899999999987  454 55665554444322        123344555554


Q ss_pred             chhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhcccchh
Q 036275          170 LPAK-RLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKDMKTAL  248 (271)
Q Consensus       170 m~~~-g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~  248 (271)
                      .... ....++..|..+.-.....|++++|...+++..+.+  |+...|..+...+...|+.++|.+.+++...-++...
T Consensus       410 a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~p  487 (517)
T PRK10153        410 IVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGEN  487 (517)
T ss_pred             hhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCc
Confidence            3332 123455778888777778899999999999999875  7888999999999999999999999999887665544

>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]

Probab=97.66  E-value=0.041  Score=49.86  Aligned_cols=211  Identities=10%  Similarity=0.094  Sum_probs=135.9

Q ss_pred             HHHHH-hcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH--HhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC
Q 036275           47 FVFIF-SIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAY--SKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLG  123 (271)
Q Consensus        47 ll~~~-~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~--~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g  123 (271)
                      +-... .+++..|++....+.+..  |+. .|..++.++  .+.|+.++|..+++.....+.. |..|...+-..|...+
T Consensus        16 i~d~ld~~qfkkal~~~~kllkk~--Pn~-~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~   91 (932)
T KOG2053|consen   16 IYDLLDSSQFKKALAKLGKLLKKH--PNA-LYAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLG   91 (932)
T ss_pred             HHHHhhhHHHHHHHHHHHHHHHHC--CCc-HHHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHh
Confidence            34455 889999999999987763  343 344555554  4789999999998888877655 8899999999999999


Q ss_pred             CHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCC---------
Q 036275          124 QFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKL---------  194 (271)
Q Consensus       124 ~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~---------  194 (271)
                      +.++|..+|++..+.  .|+......+..+|.|-+++.+..++--++.+. .+-++..+-.++....+...         
T Consensus        92 ~~d~~~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i  168 (932)
T KOG2053|consen   92 KLDEAVHLYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPI  168 (932)
T ss_pred             hhhHHHHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccch
Confidence            999999999999886  577777788888999999887655544444332 12234444445544433211         


Q ss_pred             -HHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHhccCcHHHHHHHHH-HHHhcccchhH----HHHHHHhhccccccc
Q 036275          195 -YRRCLEIFEEMIDAG-CYPDGGTAKVLISACSSEDQIEQVTTLVR-TMHKDMKTALP----IYFNLYGEKGVARSN  264 (271)
Q Consensus       195 -~~~a~~~~~~m~~~~-~~p~~~~~~~l~~~~~~~g~~~~a~~~~~-~~~~~~~~~~~----~~~~~~~~~G~~~~a  264 (271)
                       ..-|.+.++.+.+.+ -.-+..-...-...+...|++++|.+++. ...+.......    .-++.+.+.+++++-
T Consensus       169 ~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l  245 (932)
T KOG2053|consen  169 LLALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQEL  245 (932)
T ss_pred             hHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHH
Confidence             124556666666543 11122222222334567788999999984 34333222222    234455555555443

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=97.66  E-value=0.013  Score=49.90  Aligned_cols=210  Identities=10%  Similarity=0.009  Sum_probs=137.8

Q ss_pred             chHHHHHH--hcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH----
Q 036275           44 PNLFVFIF--SIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN----  117 (271)
Q Consensus        44 y~~ll~~~--~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~----  117 (271)
                      +..+..+.  ..+++.|++-++...+..  -+..-++....+|...|...++...-.+..+.|.+ ...-|+.|-.    
T Consensus       227 ek~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r  303 (539)
T KOG0548|consen  227 EKELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALAR  303 (539)
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHH
Confidence            44444444  888899999988887775  46666677778888888888888777777666543 2233333333    


Q ss_pred             ---HHHccCCHhHHHHHHHHHHhCCCCCChhh-------------------------HHHHHHHHHcCCCHHHHHHHHHh
Q 036275          118 ---LYGRLGQFEKMEEVLTAMEKGSYAADIST-------------------------YNILINIYGRGGFIEKMEGLFQS  169 (271)
Q Consensus       118 ---~~~~~g~~~~a~~~~~~m~~~~~~~~~~~-------------------------~~~li~~~~~~g~~~~a~~~~~~  169 (271)
                         +|.+.++.+.++..|.+....-..|+...                         ...-...+.+.|++..|.+.+.+
T Consensus       304 ~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~Yte  383 (539)
T KOG0548|consen  304 LGNAYTKREDYEGAIKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTE  383 (539)
T ss_pred             hhhhhhhHHhHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHH
Confidence               45556778888888877654322222211                         11124556778888888888888


Q ss_pred             chhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhcccchhH
Q 036275          170 LPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKDMKTALP  249 (271)
Q Consensus       170 m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~  249 (271)
                      +.... +-|...|....-+|.+.|.+..|.+=.+...+.. ++....|..=..++....++++|.+.|.+..+.++. ..
T Consensus       384 AIkr~-P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~-p~~~kgy~RKg~al~~mk~ydkAleay~eale~dp~-~~  460 (539)
T KOG0548|consen  384 AIKRD-PEDARLYSNRAACYLKLGEYPEALKDAKKCIELD-PNFIKAYLRKGAALRAMKEYDKALEAYQEALELDPS-NA  460 (539)
T ss_pred             HHhcC-CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCch-hH
Confidence            87764 3356788888888888888888888777777663 334455555555566667888888888887776633 33


Q ss_pred             HHHHHHhhcc
Q 036275          250 IYFNLYGEKG  259 (271)
Q Consensus       250 ~~~~~~~~~G  259 (271)
                      .+++.|.++.
T Consensus       461 e~~~~~~rc~  470 (539)
T KOG0548|consen  461 EAIDGYRRCV  470 (539)
T ss_pred             HHHHHHHHHH
Confidence            3444444443

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=97.66  E-value=0.007  Score=54.30  Aligned_cols=143  Identities=13%  Similarity=0.086  Sum_probs=72.8

Q ss_pred             hcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHhHHHHH
Q 036275           52 SIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEV  131 (271)
Q Consensus        52 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~  131 (271)
                      .|.+++|+.+|++-++.+         .|=..|-..|.|++|+++-+.-....+.   .||.....-+-..++.+.|+++
T Consensus       813 LgMlEeA~~lYr~ckR~D---------LlNKlyQs~g~w~eA~eiAE~~DRiHLr---~Tyy~yA~~Lear~Di~~Aley  880 (1416)
T KOG3617|consen  813 LGMLEEALILYRQCKRYD---------LLNKLYQSQGMWSEAFEIAETKDRIHLR---NTYYNYAKYLEARRDIEAALEY  880 (1416)
T ss_pred             HhhHHHHHHHHHHHHHHH---------HHHHHHHhcccHHHHHHHHhhccceehh---hhHHHHHHHHHhhccHHHHHHH
Confidence            667777777776665432         3334445566667666665433332222   2333333334444445555444


Q ss_pred             HHHH-----------HhC--------CCCCChhhHHHHHHHHHcCCCHHHHHHHHHhchhC----------C--------
Q 036275          132 LTAM-----------EKG--------SYAADISTYNILINIYGRGGFIEKMEGLFQSLPAK----------R--------  174 (271)
Q Consensus       132 ~~~m-----------~~~--------~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----------g--------  174 (271)
                      |+..           .+.        .-..|...|..-....-..|+.+.|+.++...+..          |        
T Consensus       881 yEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D~fs~VrI~C~qGk~~kAa~i  960 (1416)
T KOG3617|consen  881 YEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKDYFSMVRIKCIQGKTDKAARI  960 (1416)
T ss_pred             HHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhhhhhheeeEeeccCchHHHHH
Confidence            4432           110        00123344444444455566666666666544321          0        


Q ss_pred             --CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 036275          175 --LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMI  206 (271)
Q Consensus       175 --~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~  206 (271)
                        -.-|......|.+.|-..|++.+|..+|.+.+
T Consensus       961 A~esgd~AAcYhlaR~YEn~g~v~~Av~FfTrAq  994 (1416)
T KOG3617|consen  961 AEESGDKAACYHLARMYENDGDVVKAVKFFTRAQ  994 (1416)
T ss_pred             HHhcccHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence              01255566677777777777777777766543

>KOG2796 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.65  E-value=0.018  Score=44.96  Aligned_cols=139  Identities=9%  Similarity=0.052  Sum_probs=99.7

Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChhhHHHH-----H
Q 036275           77 HMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNIL-----I  151 (271)
Q Consensus        77 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l-----i  151 (271)
                      .+.++.+..-.|.+.-.+..+++.++...+.++.....|++.-.+.||.+.|..+|++..+..-..|..+++.+     .
T Consensus       180 my~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a  259 (366)
T KOG2796|consen  180 MYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSA  259 (366)
T ss_pred             HHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhh
Confidence            34566666677888888888999888877778888889999999999999999999977765334444444443     3


Q ss_pred             HHHHcCCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 036275          152 NIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAK  218 (271)
Q Consensus       152 ~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~  218 (271)
                      ..|.-++++..|...+.++.... .-|.+..|.-.-...-.|+...|.+.++.|++.  .|...+-.
T Consensus       260 ~i~lg~nn~a~a~r~~~~i~~~D-~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~--~P~~~l~e  323 (366)
T KOG2796|consen  260 FLHLGQNNFAEAHRFFTEILRMD-PRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ--DPRHYLHE  323 (366)
T ss_pred             hheecccchHHHHHHHhhccccC-CCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc--CCccchhh
Confidence            45667788888888888877653 224555555555556678889999999998876  45444433

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=97.63  E-value=0.0057  Score=54.83  Aligned_cols=199  Identities=12%  Similarity=0.088  Sum_probs=137.5

Q ss_pred             hcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC-C--------CCCCHHHHHHHHHHHHcc
Q 036275           52 SIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKS-G--------LKPDTFVINSMLNLYGRL  122 (271)
Q Consensus        52 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-~--------~~~~~~~~~~li~~~~~~  122 (271)
                      .|+.+.|.+-.+.++.      ...|..+.+.|.+.++++-|.-.+..|... |        -.++ .+=....-.....
T Consensus       741 iG~MD~AfksI~~IkS------~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~-e~eakvAvLAieL  813 (1416)
T KOG3617|consen  741 IGSMDAAFKSIQFIKS------DSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE-EDEAKVAVLAIEL  813 (1416)
T ss_pred             eccHHHHHHHHHHHhh------hHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-chhhHHHHHHHHH
Confidence            8999999888776653      368999999999999998887777666532 1        1222 2222333445688


Q ss_pred             CCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 036275          123 GQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIF  202 (271)
Q Consensus       123 g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~  202 (271)
                      |.+++|..+|.+-++         |..|=..|...|.+++|.++-+.=-...   -..||.....-+-..+|.+.|++.|
T Consensus       814 gMlEeA~~lYr~ckR---------~DLlNKlyQs~g~w~eA~eiAE~~DRiH---Lr~Tyy~yA~~Lear~Di~~Aleyy  881 (1416)
T KOG3617|consen  814 GMLEEALILYRQCKR---------YDLLNKLYQSQGMWSEAFEIAETKDRIH---LRNTYYNYAKYLEARRDIEAALEYY  881 (1416)
T ss_pred             hhHHHHHHHHHHHHH---------HHHHHHHHHhcccHHHHHHHHhhcccee---hhhhHHHHHHHHHhhccHHHHHHHH
Confidence            999999999988766         3456667888999999999877433221   2347777777777778887777665


Q ss_pred             HH-----------HHHC--------CCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhcc----------c--------
Q 036275          203 EE-----------MIDA--------GCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKDM----------K--------  245 (271)
Q Consensus       203 ~~-----------m~~~--------~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~----------~--------  245 (271)
                      ++           +.+.        .-..|...|..........|+.|.|+.++...+.-.          .        
T Consensus       882 EK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D~fs~VrI~C~qGk~~kAa~iA  961 (1416)
T KOG3617|consen  882 EKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKDYFSMVRIKCIQGKTDKAARIA  961 (1416)
T ss_pred             HhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhhhhhheeeEeeccCchHHHHHH
Confidence            43           2221        012456677778888888999999999888775421          1        


Q ss_pred             ------chhHHHHHHHhhccccccchhhhh
Q 036275          246 ------TALPIYFNLYGEKGVARSNLGQYI  269 (271)
Q Consensus       246 ------~~~~~~~~~~~~~G~~~~a~~~~~  269 (271)
                            ...-.+...|...|++.+|+.-|+
T Consensus       962 ~esgd~AAcYhlaR~YEn~g~v~~Av~FfT  991 (1416)
T KOG3617|consen  962 EESGDKAACYHLARMYENDGDVVKAVKFFT  991 (1416)
T ss_pred             HhcccHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence                  112335667888888888887664

>KOG2796 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.61  E-value=0.019  Score=44.81  Aligned_cols=159  Identities=12%  Similarity=0.048  Sum_probs=114.3

Q ss_pred             HHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHhchhCCCCCCHHHHHHHH----
Q 036275          111 VINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRL----  186 (271)
Q Consensus       111 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li----  186 (271)
                      ..+.++......|.+.-....+.+..+..-+.++.....|.+.-...|+.+.|...|++..+..-+.|..+.+.++    
T Consensus       179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~  258 (366)
T KOG2796|consen  179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS  258 (366)
T ss_pred             HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence            4567788888888999999999999987656788889999999999999999999999887654445555555544    


Q ss_pred             -HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhcccchhH---HH------HH-HH
Q 036275          187 -AAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKDMKTALP---IY------FN-LY  255 (271)
Q Consensus       187 -~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~~------~~-~~  255 (271)
                       ..|..++++.+|...+.+..... .-|....+.=.-+..-.|+...|.+.++.|.+..+.+..   .+      .+ .|
T Consensus       259 a~i~lg~nn~a~a~r~~~~i~~~D-~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~~l~es~~~nL~tmyEL~Y  337 (366)
T KOG2796|consen  259 AFLHLGQNNFAEAHRFFTEILRMD-PRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRHYLHESVLFNLTTMYELEY  337 (366)
T ss_pred             hhheecccchHHHHHHHhhccccC-CCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCccchhhhHHHHHHHHHHHHh
Confidence             34567889999999999887754 234444343333344568999999999999887655421   12      22 26


Q ss_pred             hhccccccchhhhhc
Q 036275          256 GEKGVARSNLGQYIG  270 (271)
Q Consensus       256 ~~~G~~~~a~~~~~~  270 (271)
                      ..+-+.+.++..+|.
T Consensus       338 s~~~~~k~~l~~~ia  352 (366)
T KOG2796|consen  338 SRSMQKKQALLEAVA  352 (366)
T ss_pred             hhhhhHHHHHHHHHh
Confidence            666666666666553

>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.59  E-value=0.0057  Score=56.00  Aligned_cols=110  Identities=15%  Similarity=0.115  Sum_probs=74.4

Q ss_pred             chHHHHHH---hcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 036275           44 PNLFVFIF---SIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYG  120 (271)
Q Consensus        44 y~~ll~~~---~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~  120 (271)
                      +...+..+   .+..++|.+.-++..      .+..|+.+..+-.+.|.+.+|++-|-+.      -|+..|..+++.+.
T Consensus      1077 n~~A~~VLie~i~~ldRA~efAe~~n------~p~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~ 1144 (1666)
T KOG0985|consen 1077 NVSAIQVLIENIGSLDRAYEFAERCN------EPAVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVAS 1144 (1666)
T ss_pred             cHHHHHHHHHHhhhHHHHHHHHHhhC------ChHHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHH
Confidence            44555555   677777776554332      4467888888888888777777665332      25566777888888


Q ss_pred             ccCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHH
Q 036275          121 RLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLF  167 (271)
Q Consensus       121 ~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~  167 (271)
                      +.|.+++-.+++....+....|.+.  +.||-+|++.+++.+.++++
T Consensus      1145 ~~~~~edLv~yL~MaRkk~~E~~id--~eLi~AyAkt~rl~elE~fi 1189 (1666)
T KOG0985|consen 1145 RTGKYEDLVKYLLMARKKVREPYID--SELIFAYAKTNRLTELEEFI 1189 (1666)
T ss_pred             hcCcHHHHHHHHHHHHHhhcCccch--HHHHHHHHHhchHHHHHHHh
Confidence            8888888888777776665555555  46777788877777766654

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=97.57  E-value=0.0054  Score=52.09  Aligned_cols=185  Identities=14%  Similarity=0.123  Sum_probs=132.3

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChhhHHHH-----
Q 036275           76 SHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNIL-----  150 (271)
Q Consensus        76 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l-----  150 (271)
                      -...+.++..+..+++.|++-+....+..  -+..-++..-.+|...|...++...-+...+.|. .....|+.+     
T Consensus       226 ~ek~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gr-e~rad~klIak~~~  302 (539)
T KOG0548|consen  226 KEKELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGR-ELRADYKLIAKALA  302 (539)
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhH-HHHHHHHHHHHHHH
Confidence            35578888889999999999999988875  3566677788889999999888888777776653 222333333     


Q ss_pred             --HHHHHcCCCHHHHHHHHHhchhCCCCCCHHH-------------------------HHHHHHHHHhcCCHHHHHHHHH
Q 036275          151 --INIYGRGGFIEKMEGLFQSLPAKRLKPDVVT-------------------------WTSRLAAYSRKKLYRRCLEIFE  203 (271)
Q Consensus       151 --i~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~-------------------------~~~li~~~~~~g~~~~a~~~~~  203 (271)
                        ..+|.+.++++.+...|.+....-..|+..+                         ...-...+.+.|++..|.+.|.
T Consensus       303 r~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~Yt  382 (539)
T KOG0548|consen  303 RLGNAYTKREDYEGAIKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYT  382 (539)
T ss_pred             HhhhhhhhHHhHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHH
Confidence              3456667888999999988765544443322                         1111334567899999999999


Q ss_pred             HHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhcccchhHHHHHHHhhccccccchhhh
Q 036275          204 EMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKDMKTALPIYFNLYGEKGVARSNLGQY  268 (271)
Q Consensus       204 ~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~a~~~~  268 (271)
                      +++... +-|...|..-.-+|.+.|.+..|..=.+...+.+    +..+.+|.+.|....+.+.|
T Consensus       383 eAIkr~-P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~----p~~~kgy~RKg~al~~mk~y  442 (539)
T KOG0548|consen  383 EAIKRD-PEDARLYSNRAACYLKLGEYPEALKDAKKCIELD----PNFIKAYLRKGAALRAMKEY  442 (539)
T ss_pred             HHHhcC-CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC----chHHHHHHHHHHHHHHHHHH
Confidence            999875 5567889999999999999999988777766653    44556666666555555544

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=97.53  E-value=0.0015  Score=51.59  Aligned_cols=101  Identities=14%  Similarity=0.109  Sum_probs=63.1

Q ss_pred             HHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHH
Q 036275           83 AYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEK  162 (271)
Q Consensus        83 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~  162 (271)
                      -..+.+++++|+..|.+.++.. +-|.+-|..-..+|.+.|..+.|++=.+...... +-...+|..|..+|...|++++
T Consensus        90 ~~m~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iD-p~yskay~RLG~A~~~~gk~~~  167 (304)
T KOG0553|consen   90 KLMKNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSID-PHYSKAYGRLGLAYLALGKYEE  167 (304)
T ss_pred             HHHHhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcC-hHHHHHHHHHHHHHHccCcHHH
Confidence            3556667777777777777653 2255556666677777777777766666665542 2235667777777777777777


Q ss_pred             HHHHHHhchhCCCCCCHHHHHHHHH
Q 036275          163 MEGLFQSLPAKRLKPDVVTWTSRLA  187 (271)
Q Consensus       163 a~~~~~~m~~~g~~~~~~~~~~li~  187 (271)
                      |.+.|++..+.  .|+-.+|-.=+.
T Consensus       168 A~~aykKaLel--dP~Ne~~K~nL~  190 (304)
T KOG0553|consen  168 AIEAYKKALEL--DPDNESYKSNLK  190 (304)
T ss_pred             HHHHHHhhhcc--CCCcHHHHHHHH
Confidence            77777766554  556555544333

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=97.50  E-value=0.065  Score=47.83  Aligned_cols=125  Identities=14%  Similarity=0.044  Sum_probs=99.1

Q ss_pred             HHHHHHHccCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHhchhCCCCCC-HHHHHHHHHHHHhc
Q 036275          114 SMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPD-VVTWTSRLAAYSRK  192 (271)
Q Consensus       114 ~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~-~~~~~~li~~~~~~  192 (271)
                      .....+.+.++.++|...+.+..+. .+..+..|......+...|.+++|.+.|......  .|+ +.....+...+.+.
T Consensus       655 laa~~~~~~~~~~~a~~CL~Ea~~~-~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~l--dP~hv~s~~Ala~~lle~  731 (799)
T KOG4162|consen  655 LAADLFLLSGNDDEARSCLLEASKI-DPLSASVYYLRGLLLEVKGQLEEAKEAFLVALAL--DPDHVPSMTALAELLLEL  731 (799)
T ss_pred             HHHHHHHhcCCchHHHHHHHHHHhc-chhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhc--CCCCcHHHHHHHHHHHHh
Confidence            3444555566666666666666554 2456777788888888899999999999988765  454 56788999999999


Q ss_pred             CCHHHHHH--HHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHh
Q 036275          193 KLYRRCLE--IFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHK  242 (271)
Q Consensus       193 g~~~~a~~--~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~  242 (271)
                      |+...|..  ++..+++.+ +.+...|-.+...+.+.|+.+.|.+.|.-..+
T Consensus       732 G~~~la~~~~~L~dalr~d-p~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~q  782 (799)
T KOG4162|consen  732 GSPRLAEKRSLLSDALRLD-PLNHEAWYYLGEVFKKLGDSKQAAECFQAALQ  782 (799)
T ss_pred             CCcchHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHccchHHHHHHHHHHHh
Confidence            99888888  999999886 66788999999999999999999999997643

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.50  E-value=0.029  Score=48.53  Aligned_cols=188  Identities=13%  Similarity=0.121  Sum_probs=125.7

Q ss_pred             HHHHHhcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc--CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCC
Q 036275           47 FVFIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKT--GNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQ  124 (271)
Q Consensus        47 ll~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~--~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~  124 (271)
                      ++..|.+.-+.+.++-......  .|. ..+.+++..+.+.  .....+.+++...-+....-+...--.++......|+
T Consensus       315 lL~l~tnk~~q~r~~~a~lp~~--~p~-~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn  391 (652)
T KOG2376|consen  315 LLALFTNKMDQVRELSASLPGM--SPE-SLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGN  391 (652)
T ss_pred             HHHHHhhhHHHHHHHHHhCCcc--Cch-HHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCC
Confidence            3333366666666655444321  222 3344455444332  2467777787777766433334556667778889999


Q ss_pred             HhHHHHHHH--------HHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHhchhC--CCCCCH----HHHHHHHHHHH
Q 036275          125 FEKMEEVLT--------AMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAK--RLKPDV----VTWTSRLAAYS  190 (271)
Q Consensus       125 ~~~a~~~~~--------~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--g~~~~~----~~~~~li~~~~  190 (271)
                      ++.|.+++.        .+.+.+..|  .+..++...+.+.++.+.|..++.+....  .-.+..    .++..+..--.
T Consensus       392 ~~~A~~il~~~~~~~~ss~~~~~~~P--~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~l  469 (652)
T KOG2376|consen  392 PEVALEILSLFLESWKSSILEAKHLP--GTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKL  469 (652)
T ss_pred             HHHHHHHHHHHhhhhhhhhhhhccCh--hHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHH
Confidence            999999999        666665544  44467788888888888888887776431  001122    23444444445


Q ss_pred             hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHH
Q 036275          191 RKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMH  241 (271)
Q Consensus       191 ~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~  241 (271)
                      +.|+.++|..+++++.+.+ ++|..+...++.+|++. |.+.|..+-+.+.
T Consensus       470 r~G~~~ea~s~leel~k~n-~~d~~~l~~lV~a~~~~-d~eka~~l~k~L~  518 (652)
T KOG2376|consen  470 RHGNEEEASSLLEELVKFN-PNDTDLLVQLVTAYARL-DPEKAESLSKKLP  518 (652)
T ss_pred             hcCchHHHHHHHHHHHHhC-CchHHHHHHHHHHHHhc-CHHHHHHHhhcCC
Confidence            7899999999999999864 78999999999999885 7888888877664

>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.49  E-value=0.023  Score=52.23  Aligned_cols=128  Identities=16%  Similarity=0.212  Sum_probs=83.3

Q ss_pred             hcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHhHHHHH
Q 036275           52 SIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEV  131 (271)
Q Consensus        52 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~  131 (271)
                      .+-+++|..+|++.-     .+....+.|+.-   -+.++.|.++-++..      .+..|..+..+-.+.|...+|++-
T Consensus      1061 ~~LyEEAF~ifkkf~-----~n~~A~~VLie~---i~~ldRA~efAe~~n------~p~vWsqlakAQL~~~~v~dAieS 1126 (1666)
T KOG0985|consen 1061 NQLYEEAFAIFKKFD-----MNVSAIQVLIEN---IGSLDRAYEFAERCN------EPAVWSQLAKAQLQGGLVKDAIES 1126 (1666)
T ss_pred             hhHHHHHHHHHHHhc-----ccHHHHHHHHHH---hhhHHHHHHHHHhhC------ChHHHHHHHHHHHhcCchHHHHHH
Confidence            667788888777542     244455555543   355666666655433      445677888888888887777765


Q ss_pred             HHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 036275          132 LTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEI  201 (271)
Q Consensus       132 ~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~  201 (271)
                      |-+.      .|+..|...++...+.|.+++-.+.+...+++...|..  =+.||-+|++.++..+..++
T Consensus      1127 yika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~i--d~eLi~AyAkt~rl~elE~f 1188 (1666)
T KOG0985|consen 1127 YIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYI--DSELIFAYAKTNRLTELEEF 1188 (1666)
T ss_pred             HHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccc--hHHHHHHHHHhchHHHHHHH
Confidence            5322      36677788888888888888888888777776555543  35677777777766655443

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=97.49  E-value=0.0041  Score=44.71  Aligned_cols=69  Identities=19%  Similarity=0.150  Sum_probs=32.3

Q ss_pred             HHHHHHHHHcCCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-----HCCCCCCHHH
Q 036275          147 YNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMI-----DAGCYPDGGT  216 (271)
Q Consensus       147 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~-----~~~~~p~~~~  216 (271)
                      ...++..+...|++++|.++.+.+.... +.+...|..+|.+|...|+..+|.++|+.+.     +.|+.|+..+
T Consensus        65 ~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~  138 (146)
T PF03704_consen   65 LERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET  138 (146)
T ss_dssp             HHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred             HHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence            3445555555555555555555555432 2244555555555555555555555555442     2355555544

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=97.49  E-value=0.0056  Score=55.84  Aligned_cols=82  Identities=11%  Similarity=0.076  Sum_probs=38.5

Q ss_pred             HccCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHhchhCCCCCCHHHHHHHHHH--HHhcCCHHH
Q 036275          120 GRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAA--YSRKKLYRR  197 (271)
Q Consensus       120 ~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~--~~~~g~~~~  197 (271)
                      .+.++..++..-|+...+.. |.|...|..+..+|.++|++..|.++|.+....  +|+ .+|...-.+  -+..|.+++
T Consensus       573 Lea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~L--rP~-s~y~~fk~A~~ecd~GkYke  648 (1238)
T KOG1127|consen  573 LEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLL--RPL-SKYGRFKEAVMECDNGKYKE  648 (1238)
T ss_pred             cCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhc--CcH-hHHHHHHHHHHHHHhhhHHH
Confidence            34444444444444444332 334555556666666666666666666555443  232 223222222  234555555


Q ss_pred             HHHHHHHH
Q 036275          198 CLEIFEEM  205 (271)
Q Consensus       198 a~~~~~~m  205 (271)
                      |...+...
T Consensus       649 ald~l~~i  656 (1238)
T KOG1127|consen  649 ALDALGLI  656 (1238)
T ss_pred             HHHHHHHH
Confidence            55555443

>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]

Probab=97.48  E-value=0.028  Score=48.14  Aligned_cols=175  Identities=11%  Similarity=0.123  Sum_probs=131.5

Q ss_pred             HHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCCHhHHHHHH
Q 036275           55 FSDAHAVFEEMKRLG-ITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKP-DTFVINSMLNLYGRLGQFEKMEEVL  132 (271)
Q Consensus        55 ~~~A~~~~~~~~~~~-~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~  132 (271)
                      .+.....++++...- +.|+ -+|...|+..-+..-+..|..+|.+..+.+..+ .+...+++|..+|. ++..-|.++|
T Consensus       347 ~~~~~~~~~~ll~~~~~~~t-Lv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cs-kD~~~AfrIF  424 (656)
T KOG1914|consen  347 EKKVHEIYNKLLKIEDIDLT-LVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCS-KDKETAFRIF  424 (656)
T ss_pred             hhhhHHHHHHHHhhhccCCc-eehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhc-CChhHHHHHH
Confidence            566667777776543 3444 468888999889888999999999999998877 66778888888765 5678899999


Q ss_pred             HHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHhchhCCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHC-C
Q 036275          133 TAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDV--VTWTSRLAAYSRKKLYRRCLEIFEEMIDA-G  209 (271)
Q Consensus       133 ~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~--~~~~~li~~~~~~g~~~~a~~~~~~m~~~-~  209 (271)
                      +--.+. +..++.--...++.+...++-..+..+|++....++.|+.  ..|..+|.-=+.-|+...+.++-+++... .
T Consensus       425 eLGLkk-f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~  503 (656)
T KOG1914|consen  425 ELGLKK-FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFP  503 (656)
T ss_pred             HHHHHh-cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcc
Confidence            876654 3344555578899999999999999999999988666654  68999999999999999999998887643 1


Q ss_pred             --CCCCHHHHHHHHHHHhccCcHHH
Q 036275          210 --CYPDGGTAKVLISACSSEDQIEQ  232 (271)
Q Consensus       210 --~~p~~~~~~~l~~~~~~~g~~~~  232 (271)
                        ..+...+-..+++-|.-.+...-
T Consensus       504 ~~qe~~~~~~~~~v~RY~~~d~~~c  528 (656)
T KOG1914|consen  504 ADQEYEGNETALFVDRYGILDLYPC  528 (656)
T ss_pred             hhhcCCCChHHHHHHHHhhcccccc
Confidence              22333344455555555554443

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=97.45  E-value=0.00064  Score=41.38  Aligned_cols=54  Identities=9%  Similarity=0.074  Sum_probs=24.2

Q ss_pred             HHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHh
Q 036275           83 AYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEK  137 (271)
Q Consensus        83 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  137 (271)
                      .+.+.|++++|...|+++.+... -+...+..+..++...|++++|...|+++.+
T Consensus         6 ~~~~~g~~~~A~~~~~~~l~~~P-~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~   59 (65)
T PF13432_consen    6 ALYQQGDYDEAIAAFEQALKQDP-DNPEAWYLLGRILYQQGRYDEALAYYERALE   59 (65)
T ss_dssp             HHHHCTHHHHHHHHHHHHHCCST-THHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            34444445555555544444431 1333444444444445555555544444443

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=97.45  E-value=0.019  Score=41.18  Aligned_cols=131  Identities=14%  Similarity=0.146  Sum_probs=82.8

Q ss_pred             CHHHHHHHHHH---HHccCCHhHHHHHHHHHHhC--C-CCCChhhHHHHHHHHHcCCCHHHHHHHHHhchhCCCCCCHHH
Q 036275          108 DTFVINSMLNL---YGRLGQFEKMEEVLTAMEKG--S-YAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVT  181 (271)
Q Consensus       108 ~~~~~~~li~~---~~~~g~~~~a~~~~~~m~~~--~-~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~  181 (271)
                      |...|..++..   ....++.+.+...++++...  | +-++...          .........-++.+.       ..+
T Consensus         2 D~~~F~~~~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~----------~~W~~~~r~~l~~~~-------~~~   64 (146)
T PF03704_consen    2 DVDRFEALVREARAAARAGDPEEAIELLEEALALYRGDFLPDLDD----------EEWVEPERERLRELY-------LDA   64 (146)
T ss_dssp             HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTT----------STTHHHHHHHHHHHH-------HHH
T ss_pred             CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCc----------cHHHHHHHHHHHHHH-------HHH
Confidence            34445555332   34567777888777777653  2 1222221          222233333333332       236


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHh-----cccchhHHHHHHHh
Q 036275          182 WTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHK-----DMKTALPIYFNLYG  256 (271)
Q Consensus       182 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~~~~~~~~~~~~~  256 (271)
                      ...++..+...|++++|..+.+.+.... +.|...|..+++++...|+...|.++|+++.+     -|..|.+.+-.+|.
T Consensus        65 ~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~~l~~  143 (146)
T PF03704_consen   65 LERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETRALYR  143 (146)
T ss_dssp             HHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHHHHHH
T ss_pred             HHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHHHHHH
Confidence            7778888899999999999999999864 66889999999999999999999999998853     36666666666554

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=97.44  E-value=0.008  Score=48.47  Aligned_cols=168  Identities=13%  Similarity=0.084  Sum_probs=107.5

Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHHccCCHhHHHHHHHHHHh----CCCCCC-h
Q 036275           75 KSHMLLLTAYSKTGNVAKCEGVINQMHKS----GLKPD-TFVINSMLNLYGRLGQFEKMEEVLTAMEK----GSYAAD-I  144 (271)
Q Consensus        75 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~----~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~----~~~~~~-~  144 (271)
                      ..|......|-..|++++|.+.|.+..+.    +-... ...|......|.+. ++++|.+.+++..+    .|-+.. .
T Consensus        36 ~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G~~~~aA  114 (282)
T PF14938_consen   36 DLYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREAGRFSQAA  114 (282)
T ss_dssp             HHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT-HHHHH
T ss_pred             HHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence            34555666677788888888888766432    21111 13355555555444 88888888887653    342222 4


Q ss_pred             hhHHHHHHHHHcC-CCHHHHHHHHHhchh----CCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-----C
Q 036275          145 STYNILINIYGRG-GFIEKMEGLFQSLPA----KRLKPD--VVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCY-----P  212 (271)
Q Consensus       145 ~~~~~li~~~~~~-g~~~~a~~~~~~m~~----~g~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~-----p  212 (271)
                      ..+..+...|-.. |++++|.+.|++...    .| .+.  ..++..+...+.+.|++++|.++|++....-..     +
T Consensus       115 ~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~  193 (282)
T PF14938_consen  115 KCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKY  193 (282)
T ss_dssp             HHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccch
Confidence            5677888888888 999999999998653    23 221  346777888899999999999999998764322     2


Q ss_pred             CHH-HHHHHHHHHhccCcHHHHHHHHHHHHhcc
Q 036275          213 DGG-TAKVLISACSSEDQIEQVTTLVRTMHKDM  244 (271)
Q Consensus       213 ~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~  244 (271)
                      +.. .+...+-++...||...|.+.+++.....
T Consensus       194 ~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~  226 (282)
T PF14938_consen  194 SAKEYFLKAILCHLAMGDYVAARKALERYCSQD  226 (282)
T ss_dssp             HHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTS
T ss_pred             hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence            222 23333445667799999999999987654

>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase

Probab=97.43  E-value=0.0047  Score=43.07  Aligned_cols=97  Identities=10%  Similarity=0.066  Sum_probs=58.6

Q ss_pred             HHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHhchhCCCCCCHHHHHHHHHH
Q 036275          109 TFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAA  188 (271)
Q Consensus       109 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~  188 (271)
                      ..++.++|.++++.|+.+....+++..-.-.+......           +.         .-....+.|+..+..+++.+
T Consensus         2 e~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~-----------~~---------~~~~spl~Pt~~lL~AIv~s   61 (126)
T PF12921_consen    2 EELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKE-----------GD---------YPPSSPLYPTSRLLIAIVHS   61 (126)
T ss_pred             hHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCcccc-----------Cc---------cCCCCCCCCCHHHHHHHHHH
Confidence            44566666666666666666666654432211110000           00         11233456777888888888


Q ss_pred             HHhcCCHHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHh
Q 036275          189 YSRKKLYRRCLEIFEEMID-AGCYPDGGTAKVLISACS  225 (271)
Q Consensus       189 ~~~~g~~~~a~~~~~~m~~-~~~~p~~~~~~~l~~~~~  225 (271)
                      |+.+|++..|.++++...+ .+++.+..+|..|++-+.
T Consensus        62 f~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~   99 (126)
T PF12921_consen   62 FGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAY   99 (126)
T ss_pred             HHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence            8888888888888877654 667777777777777643

The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=97.43  E-value=0.014  Score=40.30  Aligned_cols=89  Identities=13%  Similarity=0.018  Sum_probs=48.1

Q ss_pred             HHHHHccCCHhHHHHHHHHHHhCCCCCC--hhhHHHHHHHHHcCCCHHHHHHHHHhchhCCCCCC---H-HHHHHHHHHH
Q 036275          116 LNLYGRLGQFEKMEEVLTAMEKGSYAAD--ISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPD---V-VTWTSRLAAY  189 (271)
Q Consensus       116 i~~~~~~g~~~~a~~~~~~m~~~~~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~---~-~~~~~li~~~  189 (271)
                      ..++-..|+.++|+.+|++....|....  ...+-.+...+...|++++|..+|++....  .|+   . .....+.-++
T Consensus         8 A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~--~p~~~~~~~l~~f~Al~L   85 (120)
T PF12688_consen    8 AWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEE--FPDDELNAALRVFLALAL   85 (120)
T ss_pred             HHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCccccHHHHHHHHHHH
Confidence            3445556666666666666666654433  234445556666666666666666665543  122   1 1122222345


Q ss_pred             HhcCCHHHHHHHHHHHH
Q 036275          190 SRKKLYRRCLEIFEEMI  206 (271)
Q Consensus       190 ~~~g~~~~a~~~~~~m~  206 (271)
                      ...|+.++|.+.+-...
T Consensus        86 ~~~gr~~eAl~~~l~~l  102 (120)
T PF12688_consen   86 YNLGRPKEALEWLLEAL  102 (120)
T ss_pred             HHCCCHHHHHHHHHHHH
Confidence            55666666666554433

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=97.42  E-value=0.015  Score=53.28  Aligned_cols=190  Identities=12%  Similarity=0.073  Sum_probs=140.3

Q ss_pred             HHHHH-hcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCH
Q 036275           47 FVFIF-SIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQF  125 (271)
Q Consensus        47 ll~~~-~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~  125 (271)
                      .+..+ ..+...|...|-+..+.+ +.-...|..|...|....+...|.+-|++..+.. ..+......+.+.|++..++
T Consensus       465 ~a~~~~rK~~~~al~ali~alrld-~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~w  542 (1238)
T KOG1127|consen  465 VALGCMRKNSALALHALIRALRLD-VSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTW  542 (1238)
T ss_pred             HHHHHhhhhHHHHHHHHHHHHhcc-cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccH
Confidence            34444 666778888887777665 3346688999999998889999999999998774 33666788899999999999


Q ss_pred             hHHHHHHHHHHhCC-CCCChhhHHHHHHHHHcCCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 036275          126 EKMEEVLTAMEKGS-YAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEE  204 (271)
Q Consensus       126 ~~a~~~~~~m~~~~-~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~  204 (271)
                      +.|..+.-..-+.. ...-..-|-...-.|.+.++..+|..-|+...... +-|...|..+..+|.+.|++..|.++|.+
T Consensus       543 e~a~~I~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~k  621 (1238)
T KOG1127|consen  543 EEAFEICLRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTK  621 (1238)
T ss_pred             HHHHHHHHHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhh
Confidence            99999843332221 11122233345556788999999999999887763 23677899999999999999999999998


Q ss_pred             HHHCCCCCCHHHHHHHHHH--HhccCcHHHHHHHHHHHHh
Q 036275          205 MIDAGCYPDGGTAKVLISA--CSSEDQIEQVTTLVRTMHK  242 (271)
Q Consensus       205 m~~~~~~p~~~~~~~l~~~--~~~~g~~~~a~~~~~~~~~  242 (271)
                      ....  +|+. +|.....+  ....|.+.++...+..+..
T Consensus       622 As~L--rP~s-~y~~fk~A~~ecd~GkYkeald~l~~ii~  658 (1238)
T KOG1127|consen  622 ASLL--RPLS-KYGRFKEAVMECDNGKYKEALDALGLIIY  658 (1238)
T ss_pred             hHhc--CcHh-HHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence            7765  4544 45444443  4567899999988887754

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=97.41  E-value=0.0049  Score=48.94  Aligned_cols=102  Identities=11%  Similarity=-0.006  Sum_probs=64.9

Q ss_pred             hhHHHHHHHHHcCCCHHHHHHHHHhchhCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC--CCCCHHHHH
Q 036275          145 STYNILINIYGRGGFIEKMEGLFQSLPAKRLKPD----VVTWTSRLAAYSRKKLYRRCLEIFEEMIDAG--CYPDGGTAK  218 (271)
Q Consensus       145 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~--~~p~~~~~~  218 (271)
                      ..|...+..+.+.|++++|...|+.+...  -|+    +..+..+..+|...|++++|...|+.+...-  -+.....+.
T Consensus       144 ~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~--yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~  221 (263)
T PRK10803        144 TDYNAAIALVQDKSRQDDAIVAFQNFVKK--YPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMF  221 (263)
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHH
Confidence            44555555556667788887777777664  233    2466677777777888888888887777531  111233444


Q ss_pred             HHHHHHhccCcHHHHHHHHHHHHhcccchh
Q 036275          219 VLISACSSEDQIEQVTTLVRTMHKDMKTAL  248 (271)
Q Consensus       219 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~  248 (271)
                      .+...+...|+.++|..+++++.+..+...
T Consensus       222 klg~~~~~~g~~~~A~~~~~~vi~~yP~s~  251 (263)
T PRK10803        222 KVGVIMQDKGDTAKAKAVYQQVIKKYPGTD  251 (263)
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHCcCCH
Confidence            455566677888888888887777665443

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=97.40  E-value=0.0013  Score=40.00  Aligned_cols=55  Identities=11%  Similarity=0.164  Sum_probs=25.8

Q ss_pred             HHHHcCCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 036275          152 NIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMID  207 (271)
Q Consensus       152 ~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  207 (271)
                      ..+...|++++|.+.|+++.+.. +-+...+..+..++...|++++|...|++.++
T Consensus         5 ~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~   59 (65)
T PF13432_consen    5 RALYQQGDYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQGRYDEALAYYERALE   59 (65)
T ss_dssp             HHHHHCTHHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            34445555555555555554442 11334444444555555555555555555443

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=97.38  E-value=0.043  Score=43.15  Aligned_cols=188  Identities=8%  Similarity=0.040  Sum_probs=100.9

Q ss_pred             CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHH---HHHHHHHHccCCHhHHHHHHHHHHhCCC-CCChhhHH
Q 036275           73 TMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVI---NSMLNLYGRLGQFEKMEEVLTAMEKGSY-AADISTYN  148 (271)
Q Consensus        73 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~---~~li~~~~~~g~~~~a~~~~~~m~~~~~-~~~~~~~~  148 (271)
                      +...+-.....+.+.|++++|.+.|+++....... ....   -.+..++.+.+++++|...+++..+.-- .|+ ..+.
T Consensus        31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s-~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~-~~~a  108 (243)
T PRK10866         31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFG-PYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPN-IDYV  108 (243)
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC-hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCc-hHHH
Confidence            33334345555567788888888888887763322 2222   3456677788888888888888776521 122 2222


Q ss_pred             HHHHHHHcCCCHHHHHHHHHhchhCCCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 036275          149 ILINIYGRGGFIEKMEGLFQSLPAKRLKPD-----VVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA  223 (271)
Q Consensus       149 ~li~~~~~~g~~~~a~~~~~~m~~~g~~~~-----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~  223 (271)
                      ..+.+.+....-...+.-+.........++     ..++..+|+-|=...-..+|...+..+...   .-.. --.+.+-
T Consensus       109 ~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~---la~~-e~~ia~~  184 (243)
T PRK10866        109 LYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDR---LAKY-ELSVAEY  184 (243)
T ss_pred             HHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHH---HHHH-HHHHHHH
Confidence            333332210000000000000000000000     023344444444444455665555554432   1111 1245666


Q ss_pred             HhccCcHHHHHHHHHHHHhcccchh------HHHHHHHhhccccccchh
Q 036275          224 CSSEDQIEQVTTLVRTMHKDMKTAL------PIYFNLYGEKGVARSNLG  266 (271)
Q Consensus       224 ~~~~g~~~~a~~~~~~~~~~~~~~~------~~~~~~~~~~G~~~~a~~  266 (271)
                      |.+.|.+..|..-++.+.++.+.+.      ..+.++|.+.|..++|..
T Consensus       185 Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~  233 (243)
T PRK10866        185 YTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADK  233 (243)
T ss_pred             HHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHH
Confidence            8889999999999999998776543      335688999999888765

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=97.38  E-value=0.0042  Score=49.08  Aligned_cols=100  Identities=14%  Similarity=0.135  Sum_probs=64.1

Q ss_pred             HHccCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHhchhCCCCCC-HHHHHHHHHHHHhcCCHHH
Q 036275          119 YGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPD-VVTWTSRLAAYSRKKLYRR  197 (271)
Q Consensus       119 ~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~-~~~~~~li~~~~~~g~~~~  197 (271)
                      ..+.+++.+|...|.+.++.. +.|.+-|..-..+|++.|.++.|++=.+.....  .|. ..+|..|-.+|...|++++
T Consensus        91 ~m~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~i--Dp~yskay~RLG~A~~~~gk~~~  167 (304)
T KOG0553|consen   91 LMKNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSI--DPHYSKAYGRLGLAYLALGKYEE  167 (304)
T ss_pred             HHHhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhc--ChHHHHHHHHHHHHHHccCcHHH
Confidence            446677777777777776652 455666667777777777777777666665554  222 3567777777777777777


Q ss_pred             HHHHHHHHHHCCCCCCHHHHHHHHHH
Q 036275          198 CLEIFEEMIDAGCYPDGGTAKVLISA  223 (271)
Q Consensus       198 a~~~~~~m~~~~~~p~~~~~~~l~~~  223 (271)
                      |.+.|++.++.  .|+-.+|..=++.
T Consensus       168 A~~aykKaLel--dP~Ne~~K~nL~~  191 (304)
T KOG0553|consen  168 AIEAYKKALEL--DPDNESYKSNLKI  191 (304)
T ss_pred             HHHHHHhhhcc--CCCcHHHHHHHHH
Confidence            77777666553  5665565554444

>PRK15331 chaperone protein SicA; Provisional

Probab=97.36  E-value=0.0031  Score=45.59  Aligned_cols=92  Identities=8%  Similarity=-0.100  Sum_probs=55.0

Q ss_pred             chHHHHHH-hcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc
Q 036275           44 PNLFVFIF-SIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRL  122 (271)
Q Consensus        44 y~~ll~~~-~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~  122 (271)
                      |..--..| .|++++|..+|.-+...+ +-+..-|..|..++-..+++++|+..|......+.. |+..+--...++...
T Consensus        41 Y~~Ay~~y~~Gk~~eA~~~F~~L~~~d-~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~-dp~p~f~agqC~l~l  118 (165)
T PRK15331         41 YAHAYEFYNQGRLDEAETFFRFLCIYD-FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKN-DYRPVFFTGQCQLLM  118 (165)
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccC-CCCccchHHHHHHHh
Confidence            55555555 777777777777666554 335555566666666667777777776655444321 333333455566666


Q ss_pred             CCHhHHHHHHHHHHh
Q 036275          123 GQFEKMEEVLTAMEK  137 (271)
Q Consensus       123 g~~~~a~~~~~~m~~  137 (271)
                      |+.+.|...|+...+
T Consensus       119 ~~~~~A~~~f~~a~~  133 (165)
T PRK15331        119 RKAAKARQCFELVNE  133 (165)
T ss_pred             CCHHHHHHHHHHHHh
Confidence            777777776666655

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=97.33  E-value=0.0019  Score=39.75  Aligned_cols=61  Identities=16%  Similarity=0.138  Sum_probs=27.8

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC-cHHHHHHHHHHHH
Q 036275          180 VTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSED-QIEQVTTLVRTMH  241 (271)
Q Consensus       180 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~  241 (271)
                      .+|..+...+...|++++|...|++..+.. +-+...+..+..++...| ++++|.+.+++..
T Consensus         4 ~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al   65 (69)
T PF13414_consen    4 EAWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKAL   65 (69)
T ss_dssp             HHHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHH
Confidence            344444444445555555555555444432 223334444444444444 4455555444443

...

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=97.32  E-value=0.0063  Score=48.34  Aligned_cols=103  Identities=12%  Similarity=0.051  Sum_probs=79.8

Q ss_pred             HHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCC----hhhHHHHHHHHHcCCCHHHHHHHHHhchhCC--CCCCHHHH
Q 036275          109 TFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAAD----ISTYNILINIYGRGGFIEKMEGLFQSLPAKR--LKPDVVTW  182 (271)
Q Consensus       109 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g--~~~~~~~~  182 (271)
                      ...|...+....+.|++++|...|+.+.+.  .|+    ...+-.+...|...|++++|...|+.+...-  -......+
T Consensus       143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~--yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl  220 (263)
T PRK10803        143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKK--YPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAM  220 (263)
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHH
Confidence            345777777667789999999999999886  233    3577789999999999999999999998641  11124566


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 036275          183 TSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGG  215 (271)
Q Consensus       183 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~  215 (271)
                      -.+...+...|+.++|.++|+.+.+.  .|+..
T Consensus       221 ~klg~~~~~~g~~~~A~~~~~~vi~~--yP~s~  251 (263)
T PRK10803        221 FKVGVIMQDKGDTAKAKAVYQQVIKK--YPGTD  251 (263)
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHH--CcCCH
Confidence            66777888999999999999998876  45543

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=97.32  E-value=0.04  Score=42.09  Aligned_cols=178  Identities=6%  Similarity=0.022  Sum_probs=105.6

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCCh--hhHHHHH
Q 036275           76 SHMLLLTAYSKTGNVAKCEGVINQMHKSGL--KPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADI--STYNILI  151 (271)
Q Consensus        76 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~--~~~~~li  151 (271)
                      .+-.....+...|++++|...|+++.....  +......-.++.++.+.|+++.|...+++..+.  -|+.  ..+...+
T Consensus         7 ~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~--yP~~~~~~~A~Y~   84 (203)
T PF13525_consen    7 ALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL--YPNSPKADYALYM   84 (203)
T ss_dssp             HHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH---TT-TTHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCcchhhHHHH
Confidence            344555667788999999999999987622  222344556788899999999999999998765  2321  2222333


Q ss_pred             HHHHcCCCHHHHHHHHHhchhCCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC
Q 036275          152 NIYGRGGFIEKMEGLFQSLPAKRLKP---DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSED  228 (271)
Q Consensus       152 ~~~~~~g~~~~a~~~~~~m~~~g~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g  228 (271)
                      .+.+..+......     ........   -...+..++.-|=.+.-..+|...+..+.+.   . ...--.+.+.|.+.|
T Consensus        85 ~g~~~~~~~~~~~-----~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~---l-a~~e~~ia~~Y~~~~  155 (203)
T PF13525_consen   85 LGLSYYKQIPGIL-----RSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNR---L-AEHELYIARFYYKRG  155 (203)
T ss_dssp             HHHHHHHHHHHHH------TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHH---H-HHHHHHHHHHHHCTT
T ss_pred             HHHHHHHhCccch-----hcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHH---H-HHHHHHHHHHHHHcc
Confidence            3332211111111     00000000   1235666677777777777787777666542   1 112233567799999


Q ss_pred             cHHHHHHHHHHHHhcccchh------HHHHHHHhhccccccc
Q 036275          229 QIEQVTTLVRTMHKDMKTAL------PIYFNLYGEKGVARSN  264 (271)
Q Consensus       229 ~~~~a~~~~~~~~~~~~~~~------~~~~~~~~~~G~~~~a  264 (271)
                      .+..|..-++.+.+..+.+.      ..+..+|.+.|..+.+
T Consensus       156 ~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a  197 (203)
T PF13525_consen  156 KYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAA  197 (203)
T ss_dssp             -HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHH
T ss_pred             cHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHH
Confidence            99999999999998876654      3367778888887744

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=97.31  E-value=0.0011  Score=40.79  Aligned_cols=21  Identities=19%  Similarity=0.346  Sum_probs=7.8

Q ss_pred             HHHHHHccCCHhHHHHHHHHH
Q 036275          115 MLNLYGRLGQFEKMEEVLTAM  135 (271)
Q Consensus       115 li~~~~~~g~~~~a~~~~~~m  135 (271)
                      +...+...|++++|+..|++.
T Consensus         9 ~g~~~~~~~~~~~A~~~~~~a   29 (69)
T PF13414_consen    9 LGQIYFQQGDYEEAIEYFEKA   29 (69)
T ss_dssp             HHHHHHHTTHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHH
Confidence            333333333333333333333

...

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=97.30  E-value=0.018  Score=45.68  Aligned_cols=113  Identities=12%  Similarity=0.029  Sum_probs=79.7

Q ss_pred             CCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCC---CHHHHHHHHHhchhCCCCCCHHHH
Q 036275          106 KPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGG---FIEKMEGLFQSLPAKRLKPDVVTW  182 (271)
Q Consensus       106 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g---~~~~a~~~~~~m~~~g~~~~~~~~  182 (271)
                      +-|...|-.|...|...|+.+.|..-|....+.- +++...+..+..++..+.   ...++.++|+++.... .-|..+.
T Consensus       153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D-~~~iral  230 (287)
T COG4235         153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQALALD-PANIRAL  230 (287)
T ss_pred             CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcC-CccHHHH
Confidence            4477788888888888888888888888887752 456666666666655433   3567888888888763 2245566


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 036275          183 TSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLIS  222 (271)
Q Consensus       183 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~  222 (271)
                      ..|...+...|++.+|...|+.|.+.. +|+. ....+|+
T Consensus       231 ~lLA~~afe~g~~~~A~~~Wq~lL~~l-p~~~-~rr~~ie  268 (287)
T COG4235         231 SLLAFAAFEQGDYAEAAAAWQMLLDLL-PADD-PRRSLIE  268 (287)
T ss_pred             HHHHHHHHHcccHHHHHHHHHHHHhcC-CCCC-chHHHHH
Confidence            667778888888888888888888763 3333 3344443

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=97.23  E-value=0.047  Score=40.41  Aligned_cols=155  Identities=13%  Similarity=0.091  Sum_probs=88.6

Q ss_pred             HHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCC
Q 036275           79 LLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGG  158 (271)
Q Consensus        79 ~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g  158 (271)
                      .+..+..+.=+.+....-..+-.  ..-|+...--.|..+....|+..+|...|++....-+.-|....-.+.++....+
T Consensus        61 ~~~~a~~q~ldP~R~~Rea~~~~--~~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~  138 (251)
T COG4700          61 TLLMALQQKLDPERHLREATEEL--AIAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQ  138 (251)
T ss_pred             HHHHHHHHhcChhHHHHHHHHHH--hhchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhc
Confidence            33444444444444333222222  2256666666677777777777777777777666544456666666777777777


Q ss_pred             CHHHHHHHHHhchhCC---CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHH
Q 036275          159 FIEKMEGLFQSLPAKR---LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTT  235 (271)
Q Consensus       159 ~~~~a~~~~~~m~~~g---~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~  235 (271)
                      ++..|...++.+-+..   -.||  +.-.+.+++...|.++.|...|+.....  .|+...-......+.++|..+++..
T Consensus       139 ~~A~a~~tLe~l~e~~pa~r~pd--~~Ll~aR~laa~g~~a~Aesafe~a~~~--ypg~~ar~~Y~e~La~qgr~~ea~a  214 (251)
T COG4700         139 EFAAAQQTLEDLMEYNPAFRSPD--GHLLFARTLAAQGKYADAESAFEVAISY--YPGPQARIYYAEMLAKQGRLREANA  214 (251)
T ss_pred             cHHHHHHHHHHHhhcCCccCCCC--chHHHHHHHHhcCCchhHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcchhHHHH
Confidence            7777777777665432   2233  4445566677777777777777776664  4444443333444555565555444


Q ss_pred             HHHH
Q 036275          236 LVRT  239 (271)
Q Consensus       236 ~~~~  239 (271)
                      -+..
T Consensus       215 q~~~  218 (251)
T COG4700         215 QYVA  218 (251)
T ss_pred             HHHH
Confidence            3333

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=97.23  E-value=0.05  Score=47.18  Aligned_cols=159  Identities=13%  Similarity=0.086  Sum_probs=107.9

Q ss_pred             HHHHHHhcCChHHHHHHHHHHHHCC-CCCC-----HHHHHHHHHHHHc----cCCHhHHHHHHHHHHhCCCCCChhhHH-
Q 036275           80 LLTAYSKTGNVAKCEGVINQMHKSG-LKPD-----TFVINSMLNLYGR----LGQFEKMEEVLTAMEKGSYAADISTYN-  148 (271)
Q Consensus        80 li~~~~~~~~~~~a~~~~~~m~~~~-~~~~-----~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~~~~~~~~~~-  148 (271)
                      +++...-.|+-+.+++.+.+-.+.+ +.-.     .-+|+.++..++.    ..+.+.|.++++.+.+.  -|+...|. 
T Consensus       194 ll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--yP~s~lfl~  271 (468)
T PF10300_consen  194 LLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--YPNSALFLF  271 (468)
T ss_pred             HHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--CCCcHHHHH
Confidence            3333445688888888887766543 2211     1335555555444    45678899999999887  46655443 


Q ss_pred             HHHHHHHcCCCHHHHHHHHHhchhCC---CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH-
Q 036275          149 ILINIYGRGGFIEKMEGLFQSLPAKR---LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISAC-  224 (271)
Q Consensus       149 ~li~~~~~~g~~~~a~~~~~~m~~~g---~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~-  224 (271)
                      .-.+.+...|++++|.+.|++.....   .+.....+--+.-.+.-.+++++|...|..+.+.. .-+..+|..+..+| 
T Consensus       272 ~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s-~WSka~Y~Y~~a~c~  350 (468)
T PF10300_consen  272 FEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES-KWSKAFYAYLAAACL  350 (468)
T ss_pred             HHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc-ccHHHHHHHHHHHHH
Confidence            44567788999999999999755311   11233455666677888999999999999999864 44566677666654 


Q ss_pred             hccCcH-------HHHHHHHHHHH
Q 036275          225 SSEDQI-------EQVTTLVRTMH  241 (271)
Q Consensus       225 ~~~g~~-------~~a~~~~~~~~  241 (271)
                      ...|+.       ++|.++|.+..
T Consensus       351 ~~l~~~~~~~~~~~~a~~l~~~vp  374 (468)
T PF10300_consen  351 LMLGREEEAKEHKKEAEELFRKVP  374 (468)
T ss_pred             HhhccchhhhhhHHHHHHHHHHHH
Confidence            457777       88888888874

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase

Probab=97.18  E-value=0.01  Score=41.39  Aligned_cols=97  Identities=10%  Similarity=0.076  Sum_probs=57.3

Q ss_pred             CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChhhHHHHHH
Q 036275           73 TMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILIN  152 (271)
Q Consensus        73 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~  152 (271)
                      |..++..+|.++++.|+++....+.+..-..++......           +.         .-......|+..+..+++.
T Consensus         1 de~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~-----------~~---------~~~~spl~Pt~~lL~AIv~   60 (126)
T PF12921_consen    1 DEELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKE-----------GD---------YPPSSPLYPTSRLLIAIVH   60 (126)
T ss_pred             ChHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCcccc-----------Cc---------cCCCCCCCCCHHHHHHHHH
Confidence            457888999999999999999888876543221110000           00         1222334566666666666


Q ss_pred             HHHcCCCHHHHHHHHHhchh-CCCCCCHHHHHHHHHHH
Q 036275          153 IYGRGGFIEKMEGLFQSLPA-KRLKPDVVTWTSRLAAY  189 (271)
Q Consensus       153 ~~~~~g~~~~a~~~~~~m~~-~g~~~~~~~~~~li~~~  189 (271)
                      +|+.+|++..|.++++...+ -+++.+..+|..|++-.
T Consensus        61 sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~   98 (126)
T PF12921_consen   61 SFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWA   98 (126)
T ss_pred             HHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence            66666666666666665442 34555566666666543

The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=97.18  E-value=0.027  Score=44.70  Aligned_cols=105  Identities=7%  Similarity=0.021  Sum_probs=85.6

Q ss_pred             CCChhhHHHHHHHHHcCCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHCCCCCCHHHH
Q 036275          141 AADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRK---KLYRRCLEIFEEMIDAGCYPDGGTA  217 (271)
Q Consensus       141 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~---g~~~~a~~~~~~m~~~~~~p~~~~~  217 (271)
                      +-|...|-.|..+|...|+.+.|...|....+.. .+++..+..+..++...   .+..++..+|++++... +-|..+.
T Consensus       153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D-~~~iral  230 (287)
T COG4235         153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQALALD-PANIRAL  230 (287)
T ss_pred             CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcC-CccHHHH
Confidence            6689999999999999999999999999987752 34666777777665543   34568999999999875 4567777


Q ss_pred             HHHHHHHhccCcHHHHHHHHHHHHhcccch
Q 036275          218 KVLISACSSEDQIEQVTTLVRTMHKDMKTA  247 (271)
Q Consensus       218 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~  247 (271)
                      ..|...+...|++.+|...|+.|.+..++.
T Consensus       231 ~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~  260 (287)
T COG4235         231 SLLAFAAFEQGDYAEAAAAWQMLLDLLPAD  260 (287)
T ss_pred             HHHHHHHHHcccHHHHHHHHHHHHhcCCCC
Confidence            778888999999999999999999877654

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=97.17  E-value=0.056  Score=40.06  Aligned_cols=134  Identities=11%  Similarity=0.088  Sum_probs=96.6

Q ss_pred             CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCC-CCChhhHH
Q 036275           70 ITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSY-AADISTYN  148 (271)
Q Consensus        70 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~-~~~~~~~~  148 (271)
                      +.|+...--.|..+..+.|+..+|...|++...--+--|....-.+.++....+++..|...++.+.+..- ..++.+.-
T Consensus        85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~L  164 (251)
T COG4700          85 IAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHL  164 (251)
T ss_pred             hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchH
Confidence            46788877888888999999999999998887655566777777888888888999999999888877531 01344556


Q ss_pred             HHHHHHHcCCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 036275          149 ILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEM  205 (271)
Q Consensus       149 ~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m  205 (271)
                      .+.+.+...|...+|+..|+.....  -|+...-......+...|+.+++..-+..+
T Consensus       165 l~aR~laa~g~~a~Aesafe~a~~~--ypg~~ar~~Y~e~La~qgr~~ea~aq~~~v  219 (251)
T COG4700         165 LFARTLAAQGKYADAESAFEVAISY--YPGPQARIYYAEMLAKQGRLREANAQYVAV  219 (251)
T ss_pred             HHHHHHHhcCCchhHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcchhHHHHHHHHH
Confidence            6778888899999999999888775  455544333344455566666555444443

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=97.14  E-value=0.0099  Score=52.36  Aligned_cols=186  Identities=13%  Similarity=0.165  Sum_probs=116.1

Q ss_pred             HHHHhcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHccC
Q 036275           48 VFIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPD----TFVINSMLNLYGRLG  123 (271)
Q Consensus        48 l~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~----~~~~~~li~~~~~~g  123 (271)
                      +.+|-|++++|+++|-++-+++         ..|..+.+.|+|-.+.++++.   -|...|    ...|+.+...++...
T Consensus       743 i~~~~g~feeaek~yld~drrD---------LAielr~klgDwfrV~qL~r~---g~~d~dD~~~e~A~r~ig~~fa~~~  810 (1189)
T KOG2041|consen  743 ISAFYGEFEEAEKLYLDADRRD---------LAIELRKKLGDWFRVYQLIRN---GGSDDDDEGKEDAFRNIGETFAEMM  810 (1189)
T ss_pred             HhhhhcchhHhhhhhhccchhh---------hhHHHHHhhhhHHHHHHHHHc---cCCCcchHHHHHHHHHHHHHHHHHH
Confidence            4555788888888888776654         345566677777766655432   221212    356788888888888


Q ss_pred             CHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 036275          124 QFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFE  203 (271)
Q Consensus       124 ~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~  203 (271)
                      .|++|.+++..-...         ...+.++.+..++++-+.+...+.+     +......+..++...|.-++|.+.+-
T Consensus       811 ~We~A~~yY~~~~~~---------e~~~ecly~le~f~~LE~la~~Lpe-----~s~llp~~a~mf~svGMC~qAV~a~L  876 (1189)
T KOG2041|consen  811 EWEEAAKYYSYCGDT---------ENQIECLYRLELFGELEVLARTLPE-----DSELLPVMADMFTSVGMCDQAVEAYL  876 (1189)
T ss_pred             HHHHHHHHHHhccch---------HhHHHHHHHHHhhhhHHHHHHhcCc-----ccchHHHHHHHHHhhchHHHHHHHHH
Confidence            888888877654221         3466777777777777776666654     44566777788888888888777664


Q ss_pred             HHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhcccch--------------hHHHHHHHhhccccccchhhh
Q 036275          204 EMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKDMKTA--------------LPIYFNLYGEKGVARSNLGQY  268 (271)
Q Consensus       204 ~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~--------------~~~~~~~~~~~G~~~~a~~~~  268 (271)
                      +.   + .|     ...+.+|...+++.+|.++-++..-.....              ...-+..+.++|+.-+|.+.+
T Consensus       877 r~---s-~p-----kaAv~tCv~LnQW~~avelaq~~~l~qv~tliak~aaqll~~~~~~eaIe~~Rka~~~~daarll  946 (1189)
T KOG2041|consen  877 RR---S-LP-----KAAVHTCVELNQWGEAVELAQRFQLPQVQTLIAKQAAQLLADANHMEAIEKDRKAGRHLDAARLL  946 (1189)
T ss_pred             hc---c-Cc-----HHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhcchHHHHHHhhhcccchhHHHHH
Confidence            32   2 12     223556777778888777766543221111              111245577777777666543

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=97.14  E-value=0.0034  Score=39.05  Aligned_cols=51  Identities=14%  Similarity=-0.039  Sum_probs=19.7

Q ss_pred             HccCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHhch
Q 036275          120 GRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLP  171 (271)
Q Consensus       120 ~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~  171 (271)
                      .+.+++++|.++++.+.... |.++..+.....++.+.|++++|.+.|+...
T Consensus         6 ~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l   56 (73)
T PF13371_consen    6 LQQEDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLERAL   56 (73)
T ss_pred             HhCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHHHH
Confidence            33344444444444443331 2233333333344444444444444444333

>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=97.04  E-value=0.059  Score=44.15  Aligned_cols=109  Identities=9%  Similarity=0.078  Sum_probs=81.9

Q ss_pred             HHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHH
Q 036275          111 VINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYS  190 (271)
Q Consensus       111 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~  190 (271)
                      +.+..|.-+...|+...|.++-.+.   + .|+..-|...+.+++..++|++-.++...  +    -++.-|..++.+|.
T Consensus       179 Sl~~Ti~~li~~~~~k~A~kl~k~F---k-v~dkrfw~lki~aLa~~~~w~eL~~fa~s--k----KsPIGyepFv~~~~  248 (319)
T PF04840_consen  179 SLNDTIRKLIEMGQEKQAEKLKKEF---K-VPDKRFWWLKIKALAENKDWDELEKFAKS--K----KSPIGYEPFVEACL  248 (319)
T ss_pred             CHHHHHHHHHHCCCHHHHHHHHHHc---C-CcHHHHHHHHHHHHHhcCCHHHHHHHHhC--C----CCCCChHHHHHHHH
Confidence            4555677778889988888775555   3 37888899999999999999988887543  1    25678999999999


Q ss_pred             hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHH
Q 036275          191 RKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRT  239 (271)
Q Consensus       191 ~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~  239 (271)
                      ..|+..+|..++..     +. +    ..-+..|.+.|++.+|.+.-.+
T Consensus       249 ~~~~~~eA~~yI~k-----~~-~----~~rv~~y~~~~~~~~A~~~A~~  287 (319)
T PF04840_consen  249 KYGNKKEASKYIPK-----IP-D----EERVEMYLKCGDYKEAAQEAFK  287 (319)
T ss_pred             HCCCHHHHHHHHHh-----CC-h----HHHHHHHHHCCCHHHHHHHHHH
Confidence            99999999988877     22 2    3345566777888777765444

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.03  E-value=0.026  Score=44.28  Aligned_cols=95  Identities=16%  Similarity=0.105  Sum_probs=74.6

Q ss_pred             chHHHHHH-hcCHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCC--CCCHHHHHHHHHH
Q 036275           44 PNLFVFIF-SIYFSDAHAVFEEMKRLG--ITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGL--KPDTFVINSMLNL  118 (271)
Q Consensus        44 y~~ll~~~-~g~~~~A~~~~~~~~~~~--~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~--~~~~~~~~~li~~  118 (271)
                      |+.-+..| .|++..|...|....+..  -+-....+.-|..++...|++++|..+|..+.+.-.  +--+..+--|...
T Consensus       145 Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~  224 (262)
T COG1729         145 YNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVS  224 (262)
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHH
Confidence            99999999 999999999999988763  122344455589999999999999999988877521  1223666677888


Q ss_pred             HHccCCHhHHHHHHHHHHhC
Q 036275          119 YGRLGQFEKMEEVLTAMEKG  138 (271)
Q Consensus       119 ~~~~g~~~~a~~~~~~m~~~  138 (271)
                      ..+.|+.++|..+|+++.+.
T Consensus       225 ~~~l~~~d~A~atl~qv~k~  244 (262)
T COG1729         225 LGRLGNTDEACATLQQVIKR  244 (262)
T ss_pred             HHHhcCHHHHHHHHHHHHHH
Confidence            88999999999999998886

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=96.97  E-value=0.0075  Score=37.46  Aligned_cols=55  Identities=15%  Similarity=0.089  Sum_probs=27.6

Q ss_pred             HHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhC
Q 036275           83 AYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKG  138 (271)
Q Consensus        83 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~  138 (271)
                      .|.+.+++++|.++++++...+.. +...+.....++.+.|++++|.+.++...+.
T Consensus         4 ~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~   58 (73)
T PF13371_consen    4 IYLQQEDYEEALEVLERALELDPD-DPELWLQRARCLFQLGRYEEALEDLERALEL   58 (73)
T ss_pred             HHHhCCCHHHHHHHHHHHHHhCcc-cchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence            344555555555555555554322 3344444555555555555555555555543

>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]

Probab=96.93  E-value=0.026  Score=44.49  Aligned_cols=46  Identities=28%  Similarity=0.395  Sum_probs=29.7

Q ss_pred             hHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCH-HHHHHHHHhch
Q 036275          126 EKMEEVLTAMEKGSYAADISTYNILINIYGRGGFI-EKMEGLFQSLP  171 (271)
Q Consensus       126 ~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~-~~a~~~~~~m~  171 (271)
                      +-+++++++|...|+-||..+-..|+++|.+.+.. .+..++.-.|.
T Consensus       140 ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWmP  186 (406)
T KOG3941|consen  140 NCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWMP  186 (406)
T ss_pred             hHHHHHHHHHHHcCCCCchHHHHHHHHHhccccccHHHHHHHHHhhh
Confidence            34667777777777777777777777777776652 33444444443

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=96.90  E-value=0.13  Score=44.67  Aligned_cols=169  Identities=14%  Similarity=0.038  Sum_probs=116.9

Q ss_pred             HHHHHhhcCchHHHHHH--hcCHHHHHHHHHHHHHcC-CCCC-----HHHHHHHHHHHHh----cCChHHHHHHHHHHHH
Q 036275           35 INFLLLQHTPNLFVFIF--SIYFSDAHAVFEEMKRLG-ITPT-----MKSHMLLLTAYSK----TGNVAKCEGVINQMHK  102 (271)
Q Consensus        35 ~~f~~~~~~y~~ll~~~--~g~~~~A~~~~~~~~~~~-~~~~-----~~~~~~li~~~~~----~~~~~~a~~~~~~m~~  102 (271)
                      -++..+|.....++...  .|+-+..++.+.+..+.+ +.-.     .-.|+..+..++.    ....+.|.++++.+.+
T Consensus       182 L~lSlLPp~~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~  261 (468)
T PF10300_consen  182 LVLSLLPPKVLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLK  261 (468)
T ss_pred             HHHHhCCHHHHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHH
Confidence            34667777788888888  999999999999876643 2211     1234444444433    4567889999999998


Q ss_pred             CCCCCCHHHHHHH-HHHHHccCCHhHHHHHHHHHHhC--CC-CCChhhHHHHHHHHHcCCCHHHHHHHHHhchhCCCCCC
Q 036275          103 SGLKPDTFVINSM-LNLYGRLGQFEKMEEVLTAMEKG--SY-AADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPD  178 (271)
Q Consensus       103 ~~~~~~~~~~~~l-i~~~~~~g~~~~a~~~~~~m~~~--~~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~  178 (271)
                      +  .|+...|... .+.+...|++++|++.|+.....  .. ......+--+.-.+...+++++|.+.|..+.+.. .-+
T Consensus       262 ~--yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s-~WS  338 (468)
T PF10300_consen  262 R--YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES-KWS  338 (468)
T ss_pred             h--CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc-ccH
Confidence            7  6777666443 56677889999999999976542  11 1234445566777889999999999999999763 223


Q ss_pred             HHHHHHHHHHH-HhcCCH-------HHHHHHHHHHH
Q 036275          179 VVTWTSRLAAY-SRKKLY-------RRCLEIFEEMI  206 (271)
Q Consensus       179 ~~~~~~li~~~-~~~g~~-------~~a~~~~~~m~  206 (271)
                      ..+|.-+..+| ...|+.       ++|.++|++.-
T Consensus       339 ka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp  374 (468)
T PF10300_consen  339 KAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVP  374 (468)
T ss_pred             HHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHH
Confidence            44555444433 356777       78888887653

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=96.89  E-value=0.01  Score=49.93  Aligned_cols=65  Identities=5%  Similarity=-0.168  Sum_probs=49.7

Q ss_pred             CCHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCCh----hhHHHHHHHHHcCCCHHHHHHHHHhchhC
Q 036275          107 PDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADI----STYNILINIYGRGGFIEKMEGLFQSLPAK  173 (271)
Q Consensus       107 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~----~~~~~li~~~~~~g~~~~a~~~~~~m~~~  173 (271)
                      .+...++.+..+|.+.|++++|+..|++..+.  .|+.    .+|..+..+|...|+.++|.+.+++..+.
T Consensus        73 ~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL--~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel  141 (453)
T PLN03098         73 KTAEDAVNLGLSLFSKGRVKDALAQFETALEL--NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD  141 (453)
T ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            34567788888888888888888888887775  3442    34778888888888888888888887764

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=96.84  E-value=0.052  Score=46.54  Aligned_cols=154  Identities=16%  Similarity=0.124  Sum_probs=103.2

Q ss_pred             hcCHHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHhHHHH
Q 036275           52 SIYFSDAHAVFEEMKR-LGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEE  130 (271)
Q Consensus        52 ~g~~~~A~~~~~~~~~-~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~  130 (271)
                      .++++.+.++...-.- ..+|  ..-.+.++..+-+.|..+.|+++-.         |+.+   -.+...+.|+++.|.+
T Consensus       274 ~~d~~~v~~~i~~~~ll~~i~--~~~~~~i~~fL~~~G~~e~AL~~~~---------D~~~---rFeLAl~lg~L~~A~~  339 (443)
T PF04053_consen  274 RGDFEEVLRMIAASNLLPNIP--KDQGQSIARFLEKKGYPELALQFVT---------DPDH---RFELALQLGNLDIALE  339 (443)
T ss_dssp             TT-HHH-----HHHHTGGG----HHHHHHHHHHHHHTT-HHHHHHHSS----------HHH---HHHHHHHCT-HHHHHH
T ss_pred             cCChhhhhhhhhhhhhcccCC--hhHHHHHHHHHHHCCCHHHHHhhcC---------ChHH---HhHHHHhcCCHHHHHH
Confidence            8888887777752111 1222  4557888888889999999888743         3322   3566778999999987


Q ss_pred             HHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 036275          131 VLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGC  210 (271)
Q Consensus       131 ~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~  210 (271)
                      +.++.      .+...|..|.+...++|+++-|++.|++...         |..|+-.|.-.|+.+...++.+.....| 
T Consensus       340 ~a~~~------~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~~-  403 (443)
T PF04053_consen  340 IAKEL------DDPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEERG-  403 (443)
T ss_dssp             HCCCC------STHHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-
T ss_pred             HHHhc------CcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHcc-
Confidence            65333      4677999999999999999999999998763         7778888888899888888887777665 


Q ss_pred             CCCHHHHHHHHHHHhccCcHHHHHHHHHHH
Q 036275          211 YPDGGTAKVLISACSSEDQIEQVTTLVRTM  240 (271)
Q Consensus       211 ~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~  240 (271)
                      .     ++..+.++...|+.++..+++.+-
T Consensus       404 ~-----~n~af~~~~~lgd~~~cv~lL~~~  428 (443)
T PF04053_consen  404 D-----INIAFQAALLLGDVEECVDLLIET  428 (443)
T ss_dssp             ------HHHHHHHHHHHT-HHHHHHHHHHT
T ss_pred             C-----HHHHHHHHHHcCCHHHHHHHHHHc
Confidence            1     445555566668888888777654

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=96.80  E-value=0.17  Score=39.51  Aligned_cols=178  Identities=12%  Similarity=0.137  Sum_probs=94.3

Q ss_pred             chHHHHHH-hcCHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCC-CCCHHHHHHHHHHH
Q 036275           44 PNLFVFIF-SIYFSDAHAVFEEMKRLG--ITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGL-KPDTFVINSMLNLY  119 (271)
Q Consensus        44 y~~ll~~~-~g~~~~A~~~~~~~~~~~--~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~-~~~~~~~~~li~~~  119 (271)
                      |+..+.-+ .|++++|.+.|+.+..+.  .+-...+--.++-++.+.++.+.|+...++...... .||. -|-.-|.+.
T Consensus        38 Y~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~-dY~~YlkgL  116 (254)
T COG4105          38 YNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNA-DYAYYLKGL  116 (254)
T ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCh-hHHHHHHHH
Confidence            77777777 888888888888887652  233455566677777788888888888877776532 3332 233344444


Q ss_pred             Hcc-------CCHhHHHHH---HHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHhchhCCCCCCHHH-H-HHHHH
Q 036275          120 GRL-------GQFEKMEEV---LTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVT-W-TSRLA  187 (271)
Q Consensus       120 ~~~-------g~~~~a~~~---~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~-~-~~li~  187 (271)
                      +.-       .|...+..-   |++...+ + |+             +.-...|..-+..+.      |... + ..+.+
T Consensus       117 s~~~~i~~~~rDq~~~~~A~~~f~~~i~r-y-Pn-------------S~Ya~dA~~~i~~~~------d~LA~~Em~Iar  175 (254)
T COG4105         117 SYFFQIDDVTRDQSAARAAFAAFKELVQR-Y-PN-------------SRYAPDAKARIVKLN------DALAGHEMAIAR  175 (254)
T ss_pred             HHhccCCccccCHHHHHHHHHHHHHHHHH-C-CC-------------CcchhhHHHHHHHHH------HHHHHHHHHHHH
Confidence            321       122222222   2222222 1 11             111111111111111      0001 1 12234


Q ss_pred             HHHhcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHhccCcHHHHHHHHHHHHhcc
Q 036275          188 AYSRKKLYRRCLEIFEEMIDAGCYPD---GGTAKVLISACSSEDQIEQVTTLVRTMHKDM  244 (271)
Q Consensus       188 ~~~~~g~~~~a~~~~~~m~~~~~~p~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~  244 (271)
                      -|.+.|.+..|..-+++|++. .+-+   ...+-.+..+|...|-.++|...-.-+..+.
T Consensus       176 yY~kr~~~~AA~nR~~~v~e~-y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N~  234 (254)
T COG4105         176 YYLKRGAYVAAINRFEEVLEN-YPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGANY  234 (254)
T ss_pred             HHHHhcChHHHHHHHHHHHhc-cccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhcC
Confidence            567777777777777777765 1211   2345556666777777777777655554443

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=96.77  E-value=0.0053  Score=38.77  Aligned_cols=61  Identities=21%  Similarity=0.286  Sum_probs=29.1

Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHHHHC----CC-CCC-HHHHHHHHHHHHccCCHhHHHHHHHHH
Q 036275           75 KSHMLLLTAYSKTGNVAKCEGVINQMHKS----GL-KPD-TFVINSMLNLYGRLGQFEKMEEVLTAM  135 (271)
Q Consensus        75 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~----~~-~~~-~~~~~~li~~~~~~g~~~~a~~~~~~m  135 (271)
                      .+|+.+...|...|++++|+..|++..+.    |- .|+ ..++..+...+...|++++|++++++.
T Consensus         6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~a   72 (78)
T PF13424_consen    6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKA   72 (78)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            34555555555555555555555544422    11 111 233455555555555555555555543

...

>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]

Probab=96.75  E-value=0.091  Score=44.29  Aligned_cols=145  Identities=10%  Similarity=0.106  Sum_probs=88.2

Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChhhHHHHHHH
Q 036275           75 KSHMLLLTAYSKTGNVAKCEGVINQMHKSG-LKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINI  153 (271)
Q Consensus        75 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~-~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~  153 (271)
                      .+|...|+...+..-++.|..+|-+..+.| +.+++..++++|..++ .|+..-|..+|+--... ++.+..--+-.+..
T Consensus       398 ~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~-f~d~~~y~~kyl~f  475 (660)
T COG5107         398 FVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK-FPDSTLYKEKYLLF  475 (660)
T ss_pred             hHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh-CCCchHHHHHHHHH
Confidence            445566666666666777777777777776 4566666777777654 45566677777654443 22223333456666


Q ss_pred             HHcCCCHHHHHHHHHhchhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 036275          154 YGRGGFIEKMEGLFQSLPAKRLKPD--VVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISAC  224 (271)
Q Consensus       154 ~~~~g~~~~a~~~~~~m~~~g~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~  224 (271)
                      +.+.++-+.|..+|+..... +.-+  ...|..+|.-=+.-|+...+..+=+.|.+.  .|-..+...+..-|
T Consensus       476 Li~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~--~pQen~~evF~Sry  545 (660)
T COG5107         476 LIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFREL--VPQENLIEVFTSRY  545 (660)
T ss_pred             HHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHH--cCcHhHHHHHHHHH
Confidence            77777777777777744322 1112  346777777777777777777766666654  45554444444443

>COG3898 Uncharacterized membrane-bound protein [Function unknown]

Probab=96.75  E-value=0.26  Score=40.93  Aligned_cols=222  Identities=14%  Similarity=0.037  Sum_probs=144.3

Q ss_pred             HHHHHHHhhcC--chHHHHHH----hcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH--HhcCChHHHHHHHHHHHHCC
Q 036275           33 MLINFLLLQHT--PNLFVFIF----SIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAY--SKTGNVAKCEGVINQMHKSG  104 (271)
Q Consensus        33 ~~~~f~~~~~~--y~~ll~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~--~~~~~~~~a~~~~~~m~~~~  104 (271)
                      +...|..-..+  |.+|-.++    .|+-..|.++-.+..+. +..|....-.++.+-  .-.|+.+.|.+-|+.|... 
T Consensus        72 ~~Ryfr~rKRdrgyqALStGliAagAGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d-  149 (531)
T COG3898          72 ARRYFRERKRDRGYQALSTGLIAAGAGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD-  149 (531)
T ss_pred             HHHHHHHHHhhhHHHHHhhhhhhhccCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC-
Confidence            34455555544  99988888    89999998887765432 233444454555443  3469999999999999863 


Q ss_pred             CCCCHH--HHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHhchhCC-CCCCHH-
Q 036275          105 LKPDTF--VINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR-LKPDVV-  180 (271)
Q Consensus       105 ~~~~~~--~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g-~~~~~~-  180 (271)
                        |...  -...|.-..-+.|+.+.|..+-+..-+.- +.-...+...+...+..|+++.|+++++.-+... +.++.. 
T Consensus       150 --PEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~ae  226 (531)
T COG3898         150 --PETRLLGLRGLYLEAQRLGAREAARHYAERAAEKA-PQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAE  226 (531)
T ss_pred             --hHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHH
Confidence              2222  23344444457899999999988877652 3346788999999999999999999999866532 334432 


Q ss_pred             -HHHHHHHHHH---hcCCHHHHHHHHHHHHHCCCCCCHHH-HHHHHHHHhccCcHHHHHHHHHHHHhcccchhHHHHHHH
Q 036275          181 -TWTSRLAAYS---RKKLYRRCLEIFEEMIDAGCYPDGGT-AKVLISACSSEDQIEQVTTLVRTMHKDMKTALPIYFNLY  255 (271)
Q Consensus       181 -~~~~li~~~~---~~g~~~~a~~~~~~m~~~~~~p~~~~-~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~  255 (271)
                       .--.|+.+-.   -.-+...|...-.+..+  +.||... -..-.+++.+.|+..++-.+++.+-+..+.+.....-.+
T Consensus       227 R~rAvLLtAkA~s~ldadp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~ia~lY~~  304 (531)
T COG3898         227 RSRAVLLTAKAMSLLDADPASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDIALLYVR  304 (531)
T ss_pred             HHHHHHHHHHHHHHhcCChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHHHHHHHH
Confidence             1222332211   12344455554444333  3555433 233456688899999999999999888877766665555


Q ss_pred             hhcccc
Q 036275          256 GEKGVA  261 (271)
Q Consensus       256 ~~~G~~  261 (271)
                      .+.|+.
T Consensus       305 ar~gdt  310 (531)
T COG3898         305 ARSGDT  310 (531)
T ss_pred             hcCCCc
Confidence            666643

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=96.70  E-value=0.29  Score=40.81  Aligned_cols=195  Identities=13%  Similarity=0.071  Sum_probs=120.0

Q ss_pred             hcCHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCC---CCCCHHHHHHHHHHHHc---c
Q 036275           52 SIYFSDAHAVFEEMKRLGITP---TMKSHMLLLTAYSKTGNVAKCEGVINQMHKSG---LKPDTFVINSMLNLYGR---L  122 (271)
Q Consensus        52 ~g~~~~A~~~~~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~---~~~~~~~~~~li~~~~~---~  122 (271)
                      .|.-++..+.+.++.++=..|   ++.+-..++-+|-...+++..+++.+.+....   +.-+...-....-++.+   .
T Consensus       116 ~g~~~~l~~~L~~i~~rLd~~~~ls~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~  195 (374)
T PF13281_consen  116 SGARKELAKELRRIRQRLDDPELLSPDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKP  195 (374)
T ss_pred             hhHHHHHHHHHHHHHHhhCCHhhcChhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccC
Confidence            333344455555565542122   33444456667888899999999999998762   11122222234445556   8


Q ss_pred             CCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHc---------CCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcC
Q 036275          123 GQFEKMEEVLTAMEKGSYAADISTYNILINIYGR---------GGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKK  193 (271)
Q Consensus       123 g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~---------~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g  193 (271)
                      |+.++|.+++..+....-.+++.+|..+...|..         ....++|...+.+.-+.  .||..+--.+...+...|
T Consensus       196 gdre~Al~il~~~l~~~~~~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~--~~~~Y~GIN~AtLL~~~g  273 (374)
T PF13281_consen  196 GDREKALQILLPVLESDENPDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEI--EPDYYSGINAATLLMLAG  273 (374)
T ss_pred             CCHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcC--CccccchHHHHHHHHHcC
Confidence            9999999999996666667889999999887742         22367788888765544  344322112222222233


Q ss_pred             C-HH---HHHHHH---HH-HHHCCC---CCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhcccchh
Q 036275          194 L-YR---RCLEIF---EE-MIDAGC---YPDGGTAKVLISACSSEDQIEQVTTLVRTMHKDMKTAL  248 (271)
Q Consensus       194 ~-~~---~a~~~~---~~-m~~~~~---~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~  248 (271)
                      . .+   +..++-   .. ..+.|.   ..|--.+.+++.++.-.|+.++|.+..++|.+..++.|
T Consensus       274 ~~~~~~~el~~i~~~l~~llg~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~W  339 (374)
T PF13281_consen  274 HDFETSEELRKIGVKLSSLLGRKGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPAW  339 (374)
T ss_pred             CcccchHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcch
Confidence            2 21   222222   22 223332   34555677889999999999999999999998776665

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.61  E-value=0.3  Score=40.00  Aligned_cols=143  Identities=9%  Similarity=0.151  Sum_probs=65.4

Q ss_pred             hcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHhHHHHH
Q 036275           52 SIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEV  131 (271)
Q Consensus        52 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~  131 (271)
                      .|++++|..++..+.+.. .++...+-.|.-++.-.|.+.+|..+-.+.     +-++.--..++....+.++-++-..+
T Consensus        70 LgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka-----~k~pL~~RLlfhlahklndEk~~~~f  143 (557)
T KOG3785|consen   70 LGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQYIEAKSIAEKA-----PKTPLCIRLLFHLAHKLNDEKRILTF  143 (557)
T ss_pred             hccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHHHHHHHHHHhhC-----CCChHHHHHHHHHHHHhCcHHHHHHH
Confidence            555555555555554433 344444444444444445555554443221     11222333444444555555555444


Q ss_pred             HHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHhchhCCCCCCHHHHHHHHH-HHHhcCCHHHHHHHHHHHHH
Q 036275          132 LTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLA-AYSRKKLYRRCLEIFEEMID  207 (271)
Q Consensus       132 ~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~-~~~~~g~~~~a~~~~~~m~~  207 (271)
                      .+.+...     ...--.|.......-.+++|.+++.++...  .|+-...|.-+. +|.+..-++-+.++++--++
T Consensus       144 h~~LqD~-----~EdqLSLAsvhYmR~HYQeAIdvYkrvL~d--n~ey~alNVy~ALCyyKlDYydvsqevl~vYL~  213 (557)
T KOG3785|consen  144 HSSLQDT-----LEDQLSLASVHYMRMHYQEAIDVYKRVLQD--NPEYIALNVYMALCYYKLDYYDVSQEVLKVYLR  213 (557)
T ss_pred             HHHHhhh-----HHHHHhHHHHHHHHHHHHHHHHHHHHHHhc--ChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHH
Confidence            4444332     111122333333333456666666666654  334444444443 33444555555555555443

>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]

Probab=96.61  E-value=0.023  Score=44.82  Aligned_cols=72  Identities=17%  Similarity=0.214  Sum_probs=43.8

Q ss_pred             CHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCC----------------CHHHHHHHHHhchhCCCCCCHHHHHHHHH
Q 036275          124 QFEKMEEVLTAMEKGSYAADISTYNILINIYGRGG----------------FIEKMEGLFQSLPAKRLKPDVVTWTSRLA  187 (271)
Q Consensus       124 ~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g----------------~~~~a~~~~~~m~~~g~~~~~~~~~~li~  187 (271)
                      ..+-....+..|.+-|+..|..+|+.|++.+=+..                +-+-+.+++++|.-.|+.||..+-..|+.
T Consensus        87 HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn  166 (406)
T KOG3941|consen   87 HVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVN  166 (406)
T ss_pred             hHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHHHHHHHHHHHcCCCCchHHHHHHHH
Confidence            33444444455555555555555555555443322                12346777888888888888888888888


Q ss_pred             HHHhcCCH
Q 036275          188 AYSRKKLY  195 (271)
Q Consensus       188 ~~~~~g~~  195 (271)
                      ++.+.+-.
T Consensus       167 ~FGr~~~p  174 (406)
T KOG3941|consen  167 AFGRWNFP  174 (406)
T ss_pred             Hhcccccc
Confidence            88776654

>PF13170 DUF4003: Protein of unknown function (DUF4003)

Probab=96.55  E-value=0.32  Score=39.47  Aligned_cols=133  Identities=11%  Similarity=0.254  Sum_probs=86.0

Q ss_pred             HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh--cC----ChHHHHHHHHHHHHCCC---CCCHHHHHHHHHHHHccCCH
Q 036275           55 FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSK--TG----NVAKCEGVINQMHKSGL---KPDTFVINSMLNLYGRLGQF  125 (271)
Q Consensus        55 ~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~--~~----~~~~a~~~~~~m~~~~~---~~~~~~~~~li~~~~~~g~~  125 (271)
                      +++...+++.|.+.|..-+..+|-+.......  ..    ....|..+|+.|++...   .++...+..++..  ..++.
T Consensus        78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~  155 (297)
T PF13170_consen   78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV  155 (297)
T ss_pred             HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence            56677888999999988777666553333322  22    25678999999998753   3344555555544  44443


Q ss_pred             ----hHHHHHHHHHHhCCCCCCh--hhHHHHHHHHHcCCC--HHHHHHHHHhchhCCCCCCHHHHHHHHHHH
Q 036275          126 ----EKMEEVLTAMEKGSYAADI--STYNILINIYGRGGF--IEKMEGLFQSLPAKRLKPDVVTWTSRLAAY  189 (271)
Q Consensus       126 ----~~a~~~~~~m~~~~~~~~~--~~~~~li~~~~~~g~--~~~a~~~~~~m~~~g~~~~~~~~~~li~~~  189 (271)
                          +.++.+|+.+.+.|+..+-  ...+.++........  ...+.++++.+.+.|+++....|..+.-..
T Consensus       156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGlLa  227 (297)
T PF13170_consen  156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGLLA  227 (297)
T ss_pred             HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHHHH
Confidence                4567788888887876543  344444443333332  347888899999999998887776665433

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=96.51  E-value=0.1  Score=44.14  Aligned_cols=66  Identities=11%  Similarity=0.025  Sum_probs=58.9

Q ss_pred             CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHccCCHhHHHHHHHHHHhC
Q 036275           71 TPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDT----FVINSMLNLYGRLGQFEKMEEVLTAMEKG  138 (271)
Q Consensus        71 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~----~~~~~li~~~~~~g~~~~a~~~~~~m~~~  138 (271)
                      +.+...++.+..+|.+.|++++|+..|++..+.  .|+.    .+|..+..+|...|+.++|++.+++..+.
T Consensus        72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL--~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel  141 (453)
T PLN03098         72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALEL--NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD  141 (453)
T ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            557889999999999999999999999999887  4553    35899999999999999999999999885

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=96.49  E-value=0.29  Score=38.26  Aligned_cols=146  Identities=11%  Similarity=0.110  Sum_probs=77.8

Q ss_pred             HccCCHhHHHHHHHHHHhCC--CCCChhhHHHHHHHHHcCCCHHHHHHHHHhchhC-CCCCCHHHHHHHHHHHHh-----
Q 036275          120 GRLGQFEKMEEVLTAMEKGS--YAADISTYNILINIYGRGGFIEKMEGLFQSLPAK-RLKPDVVTWTSRLAAYSR-----  191 (271)
Q Consensus       120 ~~~g~~~~a~~~~~~m~~~~--~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-g~~~~~~~~~~li~~~~~-----  191 (271)
                      .+.|++++|.+.|+.+...-  -+-...+.-.++-++.+.+++++|...+++.... +-.|| .-|-..|.+.+.     
T Consensus        45 L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n-~dY~~YlkgLs~~~~i~  123 (254)
T COG4105          45 LQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPN-ADYAYYLKGLSYFFQID  123 (254)
T ss_pred             HhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCC-hhHHHHHHHHHHhccCC
Confidence            35566666666666665431  1112344445555566666666666666664432 22222 223333333321     


Q ss_pred             --cCCHHH---HHHHHHHHHHC----CCCCCHHH------------HHHHHHHHhccCcHHHHHHHHHHHHhcccch---
Q 036275          192 --KKLYRR---CLEIFEEMIDA----GCYPDGGT------------AKVLISACSSEDQIEQVTTLVRTMHKDMKTA---  247 (271)
Q Consensus       192 --~g~~~~---a~~~~~~m~~~----~~~p~~~~------------~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~---  247 (271)
                        .+|...   |..-|+++++.    ...||...            =..+.+.|.+.|.+-.|..-+++|.++....   
T Consensus       124 ~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~  203 (254)
T COG4105         124 DVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAINRFEEVLENYPDTSAV  203 (254)
T ss_pred             ccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHhccccccch
Confidence              222322   33333333332    11122211            1234566888999999999999998875443   


Q ss_pred             ---hHHHHHHHhhccccccchh
Q 036275          248 ---LPIYFNLYGEKGVARSNLG  266 (271)
Q Consensus       248 ---~~~~~~~~~~~G~~~~a~~  266 (271)
                         ...+.++|...|..++|-.
T Consensus       204 ~eaL~~l~eaY~~lgl~~~a~~  225 (254)
T COG4105         204 REALARLEEAYYALGLTDEAKK  225 (254)
T ss_pred             HHHHHHHHHHHHHhCChHHHHH
Confidence               3446778988998887753

>smart00299 CLH Clathrin heavy chain repeat homology

Probab=96.45  E-value=0.19  Score=35.73  Aligned_cols=124  Identities=10%  Similarity=0.136  Sum_probs=63.0

Q ss_pred             HHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCC
Q 036275           79 LLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGG  158 (271)
Q Consensus        79 ~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g  158 (271)
                      .++..+...+.......+++.+...+. .+...++.++..|++.+ ..+..+.+..   .   .+......++..|.+.+
T Consensus        12 ~vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~~~-~~~ll~~l~~---~---~~~yd~~~~~~~c~~~~   83 (140)
T smart00299       12 EVVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAKYD-PQKEIERLDN---K---SNHYDIEKVGKLCEKAK   83 (140)
T ss_pred             HHHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHHHC-HHHHHHHHHh---c---cccCCHHHHHHHHHHcC
Confidence            455555555666666666666666552 45556666666666543 2333333331   1   12233344566666666


Q ss_pred             CHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh
Q 036275          159 FIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRK-KLYRRCLEIFEEMIDAGCYPDGGTAKVLISACS  225 (271)
Q Consensus       159 ~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~-g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~  225 (271)
                      .++++.-++.++..         |...+..+... ++++.|.+.+.+      .-+...|..++..+.
T Consensus        84 l~~~~~~l~~k~~~---------~~~Al~~~l~~~~d~~~a~~~~~~------~~~~~lw~~~~~~~l  136 (140)
T smart00299       84 LYEEAVELYKKDGN---------FKDAIVTLIEHLGNYEKAIEYFVK------QNNPELWAEVLKALL  136 (140)
T ss_pred             cHHHHHHHHHhhcC---------HHHHHHHHHHcccCHHHHHHHHHh------CCCHHHHHHHHHHHH
Confidence            66666666655432         22233333333 556666555544      113445555555443

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=96.43  E-value=0.057  Score=46.30  Aligned_cols=138  Identities=14%  Similarity=0.076  Sum_probs=97.6

Q ss_pred             HHHHHHhhcC-chHHHHHH--hcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH
Q 036275           34 LINFLLLQHT-PNLFVFIF--SIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTF  110 (271)
Q Consensus        34 ~~~f~~~~~~-y~~ll~~~--~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~  110 (271)
                      ..+++.+|++ .+.++..+  .|..+.|+++-.+-.            .-.....+.|+++.|.++.++      ..+..
T Consensus       287 ~~ll~~i~~~~~~~i~~fL~~~G~~e~AL~~~~D~~------------~rFeLAl~lg~L~~A~~~a~~------~~~~~  348 (443)
T PF04053_consen  287 SNLLPNIPKDQGQSIARFLEKKGYPELALQFVTDPD------------HRFELALQLGNLDIALEIAKE------LDDPE  348 (443)
T ss_dssp             HHTGGG--HHHHHHHHHHHHHTT-HHHHHHHSS-HH------------HHHHHHHHCT-HHHHHHHCCC------CSTHH
T ss_pred             hhhcccCChhHHHHHHHHHHHCCCHHHHHhhcCChH------------HHhHHHHhcCCHHHHHHHHHh------cCcHH
Confidence            3455556655 44455544  899999988764332            234456688999999876544      34788


Q ss_pred             HHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHH
Q 036275          111 VINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYS  190 (271)
Q Consensus       111 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~  190 (271)
                      .|..|.+.+.+.|+++-|++.|.+...         +..|+-.|.-.|+.++..++.+.....|      -++....++.
T Consensus       349 ~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~~------~~n~af~~~~  413 (443)
T PF04053_consen  349 KWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEERG------DINIAFQAAL  413 (443)
T ss_dssp             HHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-------HHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHcc------CHHHHHHHHH
Confidence            999999999999999999999887644         5678888899999999999988887765      2677777777


Q ss_pred             hcCCHHHHHHHHHH
Q 036275          191 RKKLYRRCLEIFEE  204 (271)
Q Consensus       191 ~~g~~~~a~~~~~~  204 (271)
                      ..|+.++..+++.+
T Consensus       414 ~lgd~~~cv~lL~~  427 (443)
T PF04053_consen  414 LLGDVEECVDLLIE  427 (443)
T ss_dssp             HHT-HHHHHHHHHH
T ss_pred             HcCCHHHHHHHHHH
Confidence            88988888877654

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=96.42  E-value=0.015  Score=36.71  Aligned_cols=61  Identities=18%  Similarity=0.255  Sum_probs=30.4

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHC----CC-CCC-HHHHHHHHHHHhccCcHHHHHHHHHHHH
Q 036275          181 TWTSRLAAYSRKKLYRRCLEIFEEMIDA----GC-YPD-GGTAKVLISACSSEDQIEQVTTLVRTMH  241 (271)
Q Consensus       181 ~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~-~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~  241 (271)
                      +|+.+...|...|++++|...+++..+.    |- .|+ ..++..+..++...|++++|.+++++..
T Consensus         7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al   73 (78)
T PF13424_consen    7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL   73 (78)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            4555555555555555555555554421    10 111 2345555555666666666666665543

...

>KOG2610 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.30  E-value=0.21  Score=40.61  Aligned_cols=151  Identities=10%  Similarity=0.029  Sum_probs=102.9

Q ss_pred             hcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC---CCCCCHHHHHHHHHHHHccCCHhHH
Q 036275           52 SIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKS---GLKPDTFVINSMLNLYGRLGQFEKM  128 (271)
Q Consensus        52 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~---~~~~~~~~~~~li~~~~~~g~~~~a  128 (271)
                      .|++.+|-..|+++.+. .|.|...++..=.+|.-.|+.+.-...++++...   +++........+.-++...|-+++|
T Consensus       116 ~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~dA  194 (491)
T KOG2610|consen  116 RGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYDDA  194 (491)
T ss_pred             cccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccchhH
Confidence            67777888888888765 3667778888888888888888888888777654   2332233334444455678888888


Q ss_pred             HHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHhchhC---CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 036275          129 EEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAK---RLKPDVVTWTSRLAAYSRKKLYRRCLEIFEE  204 (271)
Q Consensus       129 ~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~---g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~  204 (271)
                      ++.-++..+.+ +.|...-.+....+-..|++.++.++..+-...   +.-.-...|-...-.+...+.++.|+++|+.
T Consensus       195 Ek~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD~  272 (491)
T KOG2610|consen  195 EKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYDR  272 (491)
T ss_pred             HHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHHH
Confidence            88888887764 556777778888888888888888887765432   1011112233333344566888888888875

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=96.28  E-value=0.12  Score=36.71  Aligned_cols=78  Identities=9%  Similarity=-0.023  Sum_probs=56.2

Q ss_pred             chHHHHHH-hcCHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 036275           44 PNLFVFIF-SIYFSDAHAVFEEMKRLG--ITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYG  120 (271)
Q Consensus        44 y~~ll~~~-~g~~~~A~~~~~~~~~~~--~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~  120 (271)
                      |+.-..++ .|++++|.+.|+.+..+-  .+-...+--.++.+|.+.+++++|...+++.++....-...-|...+.+++
T Consensus        14 y~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~   93 (142)
T PF13512_consen   14 YQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLS   93 (142)
T ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHH
Confidence            77777888 999999999999987762  233456666788899999999999999999888754322233444455443


Q ss_pred             c
Q 036275          121 R  121 (271)
Q Consensus       121 ~  121 (271)
                      .
T Consensus        94 ~   94 (142)
T PF13512_consen   94 Y   94 (142)
T ss_pred             H
Confidence            3

>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1

Probab=96.24  E-value=0.3  Score=35.80  Aligned_cols=29  Identities=17%  Similarity=0.331  Sum_probs=14.4

Q ss_pred             HHHHHCCCCCCHHHHHHHHHHHHccCCHh
Q 036275           98 NQMHKSGLKPDTFVINSMLNLYGRLGQFE  126 (271)
Q Consensus        98 ~~m~~~~~~~~~~~~~~li~~~~~~g~~~  126 (271)
                      +.+.+.+++|+...+..+++.+.+.|++.
T Consensus        18 rSl~~~~i~~~~~L~~lli~lLi~~~~~~   46 (167)
T PF07035_consen   18 RSLNQHNIPVQHELYELLIDLLIRNGQFS   46 (167)
T ss_pred             HHHHHcCCCCCHHHHHHHHHHHHHcCCHH
Confidence            33444455555555555555555555443

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.17  E-value=0.37  Score=43.19  Aligned_cols=98  Identities=13%  Similarity=0.095  Sum_probs=54.4

Q ss_pred             HcCCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHH
Q 036275          155 GRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT  234 (271)
Q Consensus       155 ~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~  234 (271)
                      ...|+..+|.++-.+.+    .||...|-.=+.+++..+++++.+++-+.+..      ..-|.-++.+|.+.|+.++|.
T Consensus       695 i~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAkskks------PIGy~PFVe~c~~~~n~~EA~  764 (829)
T KOG2280|consen  695 ILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSKKS------PIGYLPFVEACLKQGNKDEAK  764 (829)
T ss_pred             HHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhccCC------CCCchhHHHHHHhcccHHHHh
Confidence            33344444444444443    34555566666666666666655544433321      223555666677777777776


Q ss_pred             HHHHHHHhcccchhHHHHHHHhhccccccchhh
Q 036275          235 TLVRTMHKDMKTALPIYFNLYGEKGVARSNLGQ  267 (271)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~G~~~~a~~~  267 (271)
                      +++.+....     +....+|...|.+.+|.+.
T Consensus       765 KYiprv~~l-----~ekv~ay~~~~~~~eAad~  792 (829)
T KOG2280|consen  765 KYIPRVGGL-----QEKVKAYLRVGDVKEAADL  792 (829)
T ss_pred             hhhhccCCh-----HHHHHHHHHhccHHHHHHH
Confidence            666554222     1566777777877777654

>smart00299 CLH Clathrin heavy chain repeat homology

Probab=96.17  E-value=0.28  Score=34.82  Aligned_cols=125  Identities=16%  Similarity=0.137  Sum_probs=88.8

Q ss_pred             chHHHHHH--hcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 036275           44 PNLFVFIF--SIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGR  121 (271)
Q Consensus        44 y~~ll~~~--~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~  121 (271)
                      ...++..+  .+.+......++.+...+ +.+...++.++..|++.+ ....++.++.   .   .+......+++.|.+
T Consensus        10 ~~~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~-~~~ll~~l~~---~---~~~yd~~~~~~~c~~   81 (140)
T smart00299       10 VSEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYD-PQKEIERLDN---K---SNHYDIEKVGKLCEK   81 (140)
T ss_pred             HHHHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHC-HHHHHHHHHh---c---cccCCHHHHHHHHHH
Confidence            45677888  688999999999998887 478889999999999875 3444455442   1   233334558888999


Q ss_pred             cCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHcC-CCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHh
Q 036275          122 LGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRG-GFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSR  191 (271)
Q Consensus       122 ~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~-g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~  191 (271)
                      .+-++++.-++..+..     .    ...+..+... ++.+.|.+++.+-.      ++..|..++..+..
T Consensus        82 ~~l~~~~~~l~~k~~~-----~----~~Al~~~l~~~~d~~~a~~~~~~~~------~~~lw~~~~~~~l~  137 (140)
T smart00299       82 AKLYEEAVELYKKDGN-----F----KDAIVTLIEHLGNYEKAIEYFVKQN------NPELWAEVLKALLD  137 (140)
T ss_pred             cCcHHHHHHHHHhhcC-----H----HHHHHHHHHcccCHHHHHHHHHhCC------CHHHHHHHHHHHHc
Confidence            9999999888877633     2    2233333334 88999999888632      66788888877654

>PRK15331 chaperone protein SicA; Provisional

Probab=96.15  E-value=0.2  Score=36.46  Aligned_cols=88  Identities=9%  Similarity=-0.023  Sum_probs=54.1

Q ss_pred             HHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHH
Q 036275           83 AYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEK  162 (271)
Q Consensus        83 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~  162 (271)
                      -+...|++++|..+|.-+...+.. +..-+..|..++-..+++++|+..|......+ .-|+..+-....+|...|+.+.
T Consensus        46 ~~y~~Gk~~eA~~~F~~L~~~d~~-n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~-~~dp~p~f~agqC~l~l~~~~~  123 (165)
T PRK15331         46 EFYNQGRLDEAETFFRFLCIYDFY-NPDYTMGLAAVCQLKKQFQKACDLYAVAFTLL-KNDYRPVFFTGQCQLLMRKAAK  123 (165)
T ss_pred             HHHHCCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-cCCCCccchHHHHHHHhCCHHH
Confidence            344667777777777766665422 44445556666666677777777776655443 2344444456667777777777


Q ss_pred             HHHHHHhchh
Q 036275          163 MEGLFQSLPA  172 (271)
Q Consensus       163 a~~~~~~m~~  172 (271)
                      |...|+....
T Consensus       124 A~~~f~~a~~  133 (165)
T PRK15331        124 ARQCFELVNE  133 (165)
T ss_pred             HHHHHHHHHh
Confidence            7777776665

>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]

Probab=96.05  E-value=0.21  Score=42.18  Aligned_cols=133  Identities=17%  Similarity=0.168  Sum_probs=101.4

Q ss_pred             HHHHHHHHHHHccCCHhHHHHHHHHHHhCC-CCCChhhHHHHHHHHHcCCCHHHHHHHHHhchhCCCCCCHHHH-HHHHH
Q 036275          110 FVINSMLNLYGRLGQFEKMEEVLTAMEKGS-YAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTW-TSRLA  187 (271)
Q Consensus       110 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~-~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~-~~li~  187 (271)
                      ..|...|+.-.+..-++.|..+|-+..+.| +.+++..++++|..++. |+..-|.++|+.=...  -||...| +..+.
T Consensus       398 ~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~-~d~~ta~~ifelGl~~--f~d~~~y~~kyl~  474 (660)
T COG5107         398 FVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYAT-GDRATAYNIFELGLLK--FPDSTLYKEKYLL  474 (660)
T ss_pred             hHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHhc-CCcchHHHHHHHHHHh--CCCchHHHHHHHH
Confidence            345667777777777899999999999988 56788899999988775 7788899999864333  3455444 56666


Q ss_pred             HHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHhccCcHHHHHHHHHHHHhcccc
Q 036275          188 AYSRKKLYRRCLEIFEEMIDAGCYPD--GGTAKVLISACSSEDQIEQVTTLVRTMHKDMKT  246 (271)
Q Consensus       188 ~~~~~g~~~~a~~~~~~m~~~~~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~  246 (271)
                      -+..-++-+.|..+|+..+++ +.-+  ..+|..+|..-..-|++..+..+=+++.+..+.
T Consensus       475 fLi~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~pQ  534 (660)
T COG5107         475 FLIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVPQ  534 (660)
T ss_pred             HHHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcCc
Confidence            777889999999999976653 2333  568999999999999999888888887765443

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=96.03  E-value=0.34  Score=42.91  Aligned_cols=209  Identities=12%  Similarity=0.060  Sum_probs=96.6

Q ss_pred             chHHHHHH----hcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCC----CCHHHHHHH
Q 036275           44 PNLFVFIF----SIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLK----PDTFVINSM  115 (271)
Q Consensus        44 y~~ll~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~----~~~~~~~~l  115 (271)
                      ++..-.+|    .-.+-+.+.-+++++++|-.|+...   +...++-.|++.+|-++|.+--..+..    .|...| -.
T Consensus       601 f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P~~iL---lA~~~Ay~gKF~EAAklFk~~G~enRAlEmyTDlRMF-D~  676 (1081)
T KOG1538|consen  601 FETARKAYIRVRDLRYLELISELEERKKRGETPNDLL---LADVFAYQGKFHEAAKLFKRSGHENRALEMYTDLRMF-DY  676 (1081)
T ss_pred             hHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCchHHH---HHHHHHhhhhHHHHHHHHHHcCchhhHHHHHHHHHHH-HH
Confidence            56666666    3334444555677777786677653   334455567777777766543211100    011111 11


Q ss_pred             HHHHHccCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHh------chhCCCCC---CHHHHHHHH
Q 036275          116 LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQS------LPAKRLKP---DVVTWTSRL  186 (271)
Q Consensus       116 i~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~------m~~~g~~~---~~~~~~~li  186 (271)
                      ..-+...|..++-..+...--+-  ..++.-=.+....+...|+.++|..+.-+      +...+.+.   +..+...+.
T Consensus       677 aQE~~~~g~~~eKKmL~RKRA~W--Ar~~kePkaAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~l~~~a  754 (1081)
T KOG1538|consen  677 AQEFLGSGDPKEKKMLIRKRADW--ARNIKEPKAAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPLLLCA  754 (1081)
T ss_pred             HHHHhhcCChHHHHHHHHHHHHH--hhhcCCcHHHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhHHHHHH
Confidence            22233334333332222211110  00110012333444555666665554321      11111111   233444444


Q ss_pred             HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhcccchhH-------------HHHH
Q 036275          187 AAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKDMKTALP-------------IYFN  253 (271)
Q Consensus       187 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-------------~~~~  253 (271)
                      ..+.+...+-.|.++|..|-+         ...+++.....+++++|..+-++..+--..++-             .--.
T Consensus       755 ~ylk~l~~~gLAaeIF~k~gD---------~ksiVqlHve~~~W~eAFalAe~hPe~~~dVy~pyaqwLAE~DrFeEAqk  825 (1081)
T KOG1538|consen  755 TYLKKLDSPGLAAEIFLKMGD---------LKSLVQLHVETQRWDEAFALAEKHPEFKDDVYMPYAQWLAENDRFEEAQK  825 (1081)
T ss_pred             HHHhhccccchHHHHHHHhcc---------HHHHhhheeecccchHhHhhhhhCccccccccchHHHHhhhhhhHHHHHH
Confidence            444555566666677766542         234556666777777777777666543322211             1223


Q ss_pred             HHhhccccccchhh
Q 036275          254 LYGEKGVARSNLGQ  267 (271)
Q Consensus       254 ~~~~~G~~~~a~~~  267 (271)
                      +|-++|+.++|.+.
T Consensus       826 AfhkAGr~~EA~~v  839 (1081)
T KOG1538|consen  826 AFHKAGRQREAVQV  839 (1081)
T ss_pred             HHHHhcchHHHHHH
Confidence            46666666666543

>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1

Probab=96.01  E-value=0.4  Score=35.18  Aligned_cols=136  Identities=15%  Similarity=0.132  Sum_probs=91.8

Q ss_pred             HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhC
Q 036275           59 HAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKG  138 (271)
Q Consensus        59 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~  138 (271)
                      .+..+-+.+.+++|+...|..+++.+.+.|++..    +.++...++-+|.......+-.+..  ....+.++=-+|.++
T Consensus        14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~----L~qllq~~Vi~DSk~lA~~LLs~~~--~~~~~~Ql~lDMLkR   87 (167)
T PF07035_consen   14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQ----LHQLLQYHVIPDSKPLACQLLSLGN--QYPPAYQLGLDMLKR   87 (167)
T ss_pred             HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHH----HHHHHhhcccCCcHHHHHHHHHhHc--cChHHHHHHHHHHHH
Confidence            4556666778999999999999999999998654    4566677777776665554433332  223444444444443


Q ss_pred             CCCCChhhHHHHHHHHHcCCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 036275          139 SYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDA  208 (271)
Q Consensus       139 ~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~  208 (271)
                          -...+..+++.+...|++-+|.++.+.....    +......++.+....+|...-..+++-..+.
T Consensus        88 ----L~~~~~~iievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~~  149 (167)
T PF07035_consen   88 ----LGTAYEEIIEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSNDDQLFYAVFRFFEER  149 (167)
T ss_pred             ----hhhhHHHHHHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence                0113567888899999999999999876432    2233466777877888877766666666554

>PF13170 DUF4003: Protein of unknown function (DUF4003)

Probab=95.89  E-value=0.75  Score=37.35  Aligned_cols=151  Identities=15%  Similarity=0.225  Sum_probs=93.4

Q ss_pred             hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc--cCC----HhHHHHHHHHHHhCCC---CCChhhHHHHHHHHHcCCC-
Q 036275           90 VAKCEGVINQMHKSGLKPDTFVINSMLNLYGR--LGQ----FEKMEEVLTAMEKGSY---AADISTYNILINIYGRGGF-  159 (271)
Q Consensus        90 ~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~--~g~----~~~a~~~~~~m~~~~~---~~~~~~~~~li~~~~~~g~-  159 (271)
                      +++.+.+++.|.+.|+.-+..+|-+..-....  ..+    ...+..+++.|++.-.   .++...+..++..  ..++ 
T Consensus        78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~  155 (297)
T PF13170_consen   78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV  155 (297)
T ss_pred             HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence            55678889999999998888777553333322  222    4568899999998622   1334455555444  3444 


Q ss_pred             ---HHHHHHHHHhchhCCCCCCH--HHHHHHHHHHHhcCC--HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCc---
Q 036275          160 ---IEKMEGLFQSLPAKRLKPDV--VTWTSRLAAYSRKKL--YRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQ---  229 (271)
Q Consensus       160 ---~~~a~~~~~~m~~~g~~~~~--~~~~~li~~~~~~g~--~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~---  229 (271)
                         .+.++.+|+.+...|+..+.  .....++........  ...+.++++.+.+.|+++....|..+.-...-.+.   
T Consensus       156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGlLall~~~~~~  235 (297)
T PF13170_consen  156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGLLALLEDPEEK  235 (297)
T ss_pred             HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHHHHhcCCchHH
Confidence               35678888888887876653  333444433332222  44788889999999999888777765444333233   


Q ss_pred             -HHHHHHHHHHHHh
Q 036275          230 -IEQVTTLVRTMHK  242 (271)
Q Consensus       230 -~~~a~~~~~~~~~  242 (271)
                       .+...++.+.+.+
T Consensus       236 ~~~~i~ev~~~L~~  249 (297)
T PF13170_consen  236 IVEEIKEVIDELKE  249 (297)
T ss_pred             HHHHHHHHHHHHhh
Confidence             3344444445443

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=95.80  E-value=0.31  Score=36.31  Aligned_cols=97  Identities=10%  Similarity=0.027  Sum_probs=59.4

Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChhhHHHHHH
Q 036275           75 KSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDT--FVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILIN  152 (271)
Q Consensus        75 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~--~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~  152 (271)
                      ..+..+...|++.|+.+.|++.|.++.+....+..  ..+-.+|+.....+++..+...+.+....--.........-+.
T Consensus        37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk  116 (177)
T PF10602_consen   37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK  116 (177)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence            45667788888888888888888888777554443  3466777888888888888877776654311111111111111


Q ss_pred             -----HHHcCCCHHHHHHHHHhch
Q 036275          153 -----IYGRGGFIEKMEGLFQSLP  171 (271)
Q Consensus       153 -----~~~~~g~~~~a~~~~~~m~  171 (271)
                           .+...+++.+|-+.|-+..
T Consensus       117 ~~~gL~~l~~r~f~~AA~~fl~~~  140 (177)
T PF10602_consen  117 VYEGLANLAQRDFKEAAELFLDSL  140 (177)
T ss_pred             HHHHHHHHHhchHHHHHHHHHccC
Confidence                 2234566777666666554

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=95.76  E-value=0.99  Score=37.75  Aligned_cols=164  Identities=15%  Similarity=0.133  Sum_probs=104.0

Q ss_pred             HHHHH--hcCHHHHHHHHHHHHHcC---CCCCHHHHHHHHHHHHh---cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 036275           47 FVFIF--SIYFSDAHAVFEEMKRLG---ITPTMKSHMLLLTAYSK---TGNVAKCEGVINQMHKSGLKPDTFVINSMLNL  118 (271)
Q Consensus        47 ll~~~--~g~~~~A~~~~~~~~~~~---~~~~~~~~~~li~~~~~---~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~  118 (271)
                      ++-+|  ..+++..+++.+.+...-   +.-+...-....-++.+   .|+.++|++++..+......+++.+|..+.+.
T Consensus       147 lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GRI  226 (374)
T PF13281_consen  147 LLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGRI  226 (374)
T ss_pred             HHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHHH
Confidence            33356  899999999999997751   22233333344555666   89999999999997766668899999888887


Q ss_pred             HHcc---------CCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCC-HH---HHHHHH---Hh-chhCCC---CCC
Q 036275          119 YGRL---------GQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGF-IE---KMEGLF---QS-LPAKRL---KPD  178 (271)
Q Consensus       119 ~~~~---------g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~-~~---~a~~~~---~~-m~~~g~---~~~  178 (271)
                      |-..         ..+++|+..|.+.-+.  .||...--.+...+...|. .+   +..++-   .. +.++|.   ..+
T Consensus       227 yKD~~~~s~~~d~~~ldkAi~~Y~kgFe~--~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~~d  304 (374)
T PF13281_consen  227 YKDLFLESNFTDRESLDKAIEWYRKGFEI--EPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKMQD  304 (374)
T ss_pred             HHHHHHHcCccchHHHHHHHHHHHHHHcC--CccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhcccccccc
Confidence            7532         2366777777766554  2443322222222333332 22   222222   11 222332   234


Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 036275          179 VVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPD  213 (271)
Q Consensus       179 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~  213 (271)
                      --.+.+++.++.-.|+.++|.+..+.|.... +|.
T Consensus       305 YWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~-~~~  338 (374)
T PF13281_consen  305 YWDVATLLEASVLAGDYEKAIQAAEKAFKLK-PPA  338 (374)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHhhcC-Ccc
Confidence            4567888999999999999999999999763 443

>COG3898 Uncharacterized membrane-bound protein [Function unknown]

Probab=95.70  E-value=1  Score=37.54  Aligned_cols=182  Identities=12%  Similarity=0.017  Sum_probs=89.9

Q ss_pred             hcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCC-CCCC----------------------
Q 036275           52 SIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSG-LKPD----------------------  108 (271)
Q Consensus        52 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~-~~~~----------------------  108 (271)
                      .|..+.|...-.+..... +.-...+...+...+..|+|+.|+++.+.-++.. +.++                      
T Consensus       167 ~GareaAr~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp  245 (531)
T COG3898         167 LGAREAARHYAERAAEKA-PQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADP  245 (531)
T ss_pred             cccHHHHHHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCCh
Confidence            555555555555544332 3344556677777777777777777776544321 1111                      


Q ss_pred             ----------------HHH-HHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHhch
Q 036275          109 ----------------TFV-INSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLP  171 (271)
Q Consensus       109 ----------------~~~-~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~  171 (271)
                                      ..- --.-.+++.+.|+..++-.+++.+-+.  .|.+..+.  +..+.+.|+.  +..-+++..
T Consensus       246 ~~Ar~~A~~a~KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~--ePHP~ia~--lY~~ar~gdt--a~dRlkRa~  319 (531)
T COG3898         246 ASARDDALEANKLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKA--EPHPDIAL--LYVRARSGDT--ALDRLKRAK  319 (531)
T ss_pred             HHHHHHHHHHhhcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhc--CCChHHHH--HHHHhcCCCc--HHHHHHHHH
Confidence                            111 111223344445555555555555444  23333222  1222333332  111111111


Q ss_pred             h-CCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH-hccCcHHHHHHHHHHHHh
Q 036275          172 A-KRLKP-DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISAC-SSEDQIEQVTTLVRTMHK  242 (271)
Q Consensus       172 ~-~g~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~-~~~g~~~~a~~~~~~~~~  242 (271)
                      . ..++| +...--.+.++....|++..|..--+....  ..|....|..|.+.- ...||-.++.+.+-+..+
T Consensus       320 ~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r--~~pres~~lLlAdIeeAetGDqg~vR~wlAqav~  391 (531)
T COG3898         320 KLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAR--EAPRESAYLLLADIEEAETGDQGKVRQWLAQAVK  391 (531)
T ss_pred             HHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhh--hCchhhHHHHHHHHHhhccCchHHHHHHHHHHhc
Confidence            1 01122 234445555566666666665554444333  257777787777764 345888888888777654

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=95.68  E-value=0.88  Score=36.64  Aligned_cols=194  Identities=12%  Similarity=0.077  Sum_probs=112.6

Q ss_pred             chHHHHHH-hc-CHHHHHHHHHHHHHc--------CCCCC-----HHHHHHHHHHHHhcCChH---HHHHHHHHHHHCCC
Q 036275           44 PNLFVFIF-SI-YFSDAHAVFEEMKRL--------GITPT-----MKSHMLLLTAYSKTGNVA---KCEGVINQMHKSGL  105 (271)
Q Consensus        44 y~~ll~~~-~g-~~~~A~~~~~~~~~~--------~~~~~-----~~~~~~li~~~~~~~~~~---~a~~~~~~m~~~~~  105 (271)
                      ||.-...+ .+ +++.|...+++..+.        ...|+     ..++..++.+|...+..+   +|..+++.+.....
T Consensus        39 yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~  118 (278)
T PF08631_consen   39 YNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRLSILRLLANAYLEWDTYESVEKALNALRLLESEYG  118 (278)
T ss_pred             HHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCC
Confidence            88888888 88 999888887776443        12223     345566777887776644   56666666655532


Q ss_pred             CCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHH---HcCCCHHHHHHHHHhchhCCCCCCHH-H
Q 036275          106 KPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIY---GRGGFIEKMEGLFQSLPAKRLKPDVV-T  181 (271)
Q Consensus       106 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~---~~~g~~~~a~~~~~~m~~~g~~~~~~-~  181 (271)
                      . .+..+-.-++.+.+.++.+.+.+++.+|... +......+..++..+   ... ....+...++.+....+.|+.. .
T Consensus       119 ~-~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~-~~~~e~~~~~~l~~i~~l~~~-~~~~a~~~ld~~l~~r~~~~~~~~  195 (278)
T PF08631_consen  119 N-KPEVFLLKLEILLKSFDEEEYEEILMRMIRS-VDHSESNFDSILHHIKQLAEK-SPELAAFCLDYLLLNRFKSSEDQW  195 (278)
T ss_pred             C-CcHHHHHHHHHHhccCChhHHHHHHHHHHHh-cccccchHHHHHHHHHHHHhh-CcHHHHHHHHHHHHHHhCCChhHH
Confidence            2 2445556677777789999999999999886 232445555555555   333 3345666666665554555553 1


Q ss_pred             HHHHHHH--H--HhcCC------HHHHHHHHHHHHH-CCCCCCHHHHHHH---H----HHHhccCcHHHHHHHHHHH
Q 036275          182 WTSRLAA--Y--SRKKL------YRRCLEIFEEMID-AGCYPDGGTAKVL---I----SACSSEDQIEQVTTLVRTM  240 (271)
Q Consensus       182 ~~~li~~--~--~~~g~------~~~a~~~~~~m~~-~~~~p~~~~~~~l---~----~~~~~~g~~~~a~~~~~~~  240 (271)
                      ...++-.  +  .+.++      .+.+..+++...+ .+.+.+..+-..+   +    ..+.+.++++.|.++|+-.
T Consensus       196 ~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~~~ls~~~~~a~~~LLW~~~~~~~~~k~y~~A~~w~~~a  272 (278)
T PF08631_consen  196 LEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEHSLGKQLSAEAASAIHTLLWNKGKKHYKAKNYDEAIEWYELA  272 (278)
T ss_pred             HHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHH
Confidence            1111111  1  11111      4444455553332 3334444443322   2    2356778999999988753

It is also involved in sporulation [].

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=95.66  E-value=0.31  Score=40.56  Aligned_cols=91  Identities=9%  Similarity=-0.021  Sum_probs=45.6

Q ss_pred             HHHHHhcCChHHHHHHHHHHHHC-----CCCC---------CHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChhh
Q 036275           81 LTAYSKTGNVAKCEGVINQMHKS-----GLKP---------DTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADIST  146 (271)
Q Consensus        81 i~~~~~~~~~~~a~~~~~~m~~~-----~~~~---------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~  146 (271)
                      .+.+.+.|++..|..-|++....     +.++         -...+..|.-++.+.+++..|++.-+.....+ +.++-.
T Consensus       215 Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KA  293 (397)
T KOG0543|consen  215 GNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKA  293 (397)
T ss_pred             hhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhH
Confidence            34577788888888887775432     1111         11223444444445555555555544444443 334444


Q ss_pred             HHHHHHHHHcCCCHHHHHHHHHhchh
Q 036275          147 YNILINIYGRGGFIEKMEGLFQSLPA  172 (271)
Q Consensus       147 ~~~li~~~~~~g~~~~a~~~~~~m~~  172 (271)
                      .---..++...|+++.|+..|+.+.+
T Consensus       294 LyRrG~A~l~~~e~~~A~~df~ka~k  319 (397)
T KOG0543|consen  294 LYRRGQALLALGEYDLARDDFQKALK  319 (397)
T ss_pred             HHHHHHHHHhhccHHHHHHHHHHHHH
Confidence            44444455555555555555555444

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=95.64  E-value=0.59  Score=39.10  Aligned_cols=131  Identities=12%  Similarity=0.056  Sum_probs=69.9

Q ss_pred             HHHHHH-HHHHHccCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHhchhCCCCCCHHHH------
Q 036275          110 FVINSM-LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTW------  182 (271)
Q Consensus       110 ~~~~~l-i~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~------  182 (271)
                      .++..+ ..++...|+.++|..+--..++.. ..+....-.-..++...++.+.+...|++....+  |+...-      
T Consensus       169 ~~a~~lka~cl~~~~~~~~a~~ea~~ilkld-~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ld--pdh~~sk~~~~~  245 (486)
T KOG0550|consen  169 FKAKLLKAECLAFLGDYDEAQSEAIDILKLD-ATNAEALYVRGLCLYYNDNADKAINHFQQALRLD--PDHQKSKSASMM  245 (486)
T ss_pred             hHHHHhhhhhhhhcccchhHHHHHHHHHhcc-cchhHHHHhcccccccccchHHHHHHHhhhhccC--hhhhhHHhHhhh
Confidence            444433 223445566677666655554432 1122222222233445566677777777665542  332211      


Q ss_pred             -------HHHHHHHHhcCCHHHHHHHHHHHHH---CCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhc
Q 036275          183 -------TSRLAAYSRKKLYRRCLEIFEEMID---AGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKD  243 (271)
Q Consensus       183 -------~~li~~~~~~g~~~~a~~~~~~m~~---~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~  243 (271)
                             ..-..-..+.|++..|.+.+.+.+.   .++.|+...|.....+..+.|+..+|..-.++..+-
T Consensus       246 ~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~i  316 (486)
T KOG0550|consen  246 PKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKI  316 (486)
T ss_pred             HHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhc
Confidence                   1112223456777777777777654   344556666666666677777777777766665543

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=95.64  E-value=0.34  Score=40.28  Aligned_cols=125  Identities=13%  Similarity=0.033  Sum_probs=91.3

Q ss_pred             HHHHHHccCCHhHHHHHHHHHHhC-----CC---------CCChhhHHHHHHHHHcCCCHHHHHHHHHhchhCCCCCCHH
Q 036275          115 MLNLYGRLGQFEKMEEVLTAMEKG-----SY---------AADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVV  180 (271)
Q Consensus       115 li~~~~~~g~~~~a~~~~~~m~~~-----~~---------~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~  180 (271)
                      -.+.+.+.|++..|..-|++....     +.         ..-..+++.|..+|.+.+++.+|++.-.+....+ ++|..
T Consensus       214 ~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~K  292 (397)
T KOG0543|consen  214 RGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVK  292 (397)
T ss_pred             hhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchh
Confidence            345677889999998888775432     11         1234457788889999999999999999988775 45778


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh-ccC-cHHHHHHHHHHHHh
Q 036275          181 TWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACS-SED-QIEQVTTLVRTMHK  242 (271)
Q Consensus       181 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~-~~g-~~~~a~~~~~~~~~  242 (271)
                      ....-.+++...|+++.|...|+++++.  .|+......=+..|. +.. ..++..++|..|..
T Consensus       293 ALyRrG~A~l~~~e~~~A~~df~ka~k~--~P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF~  354 (397)
T KOG0543|consen  293 ALYRRGQALLALGEYDLARDDFQKALKL--EPSNKAARAELIKLKQKIREYEEKEKKMYANMFA  354 (397)
T ss_pred             HHHHHHHHHHhhccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            8888889999999999999999999986  566555554444443 333 33445778888754

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=95.58  E-value=0.28  Score=43.75  Aligned_cols=177  Identities=13%  Similarity=0.156  Sum_probs=103.2

Q ss_pred             CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC-CCCCC--------HHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCC
Q 036275           71 TPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKS-GLKPD--------TFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYA  141 (271)
Q Consensus        71 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-~~~~~--------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~  141 (271)
                      .|-+..|..+.......-.++.|+..|-+.... |++.-        ...-.+=+.+  --|++++|++++-+|.++   
T Consensus       689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~--~~g~feeaek~yld~drr---  763 (1189)
T KOG2041|consen  689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISA--FYGEFEEAEKLYLDADRR---  763 (1189)
T ss_pred             CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhh--hhcchhHhhhhhhccchh---
Confidence            477888988888888887888888777665543 33211        1111111222  347888888888777655   


Q ss_pred             CChhhHHHHHHHHHcCCCHHHHHHHHHhchhCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 036275          142 ADISTYNILINIYGRGGFIEKMEGLFQSLPAKR-LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVL  220 (271)
Q Consensus       142 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g-~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l  220 (271)
                            ...|..+.+.|++-...++++.=-... -..-...|+.+...+.....|++|.+.+.....      .   ...
T Consensus       764 ------DLAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~------~---e~~  828 (1189)
T KOG2041|consen  764 ------DLAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGD------T---ENQ  828 (1189)
T ss_pred             ------hhhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc------h---HhH
Confidence                  345677778888877776665321110 001134677777777777778887777765321      1   223


Q ss_pred             HHHHhccCcHHHHHHHHHHHHhcccchhHHHHHHHhhccccccchhhh
Q 036275          221 ISACSSEDQIEQVTTLVRTMHKDMKTALPIYFNLYGEKGVARSNLGQY  268 (271)
Q Consensus       221 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~a~~~~  268 (271)
                      +.++.+..++++.+.+.+.+.++ ....+.+.+++.+.|..++|++.|
T Consensus       829 ~ecly~le~f~~LE~la~~Lpe~-s~llp~~a~mf~svGMC~qAV~a~  875 (1189)
T KOG2041|consen  829 IECLYRLELFGELEVLARTLPED-SELLPVMADMFTSVGMCDQAVEAY  875 (1189)
T ss_pred             HHHHHHHHhhhhHHHHHHhcCcc-cchHHHHHHHHHhhchHHHHHHHH
Confidence            45555555555555555444433 333445555666666666665554

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=95.58  E-value=0.51  Score=33.50  Aligned_cols=53  Identities=17%  Similarity=0.164  Sum_probs=26.5

Q ss_pred             HccCCHhHHHHHHHHHHhCCCC---CChhhHHHHHHHHHcCCCHHHHHHHHHhchhC
Q 036275          120 GRLGQFEKMEEVLTAMEKGSYA---ADISTYNILINIYGRGGFIEKMEGLFQSLPAK  173 (271)
Q Consensus       120 ~~~g~~~~a~~~~~~m~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~  173 (271)
                      .+.|++++|.+.|+.+..+ ++   -...+--.|+.+|.+.|++++|...+++..+.
T Consensus        21 l~~~~Y~~A~~~le~L~~r-yP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirL   76 (142)
T PF13512_consen   21 LQKGNYEEAIKQLEALDTR-YPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRL   76 (142)
T ss_pred             HHhCCHHHHHHHHHHHHhc-CCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence            3455555555555555543 11   12233344555555555555555555555443

>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus

Probab=95.58  E-value=0.5  Score=33.05  Aligned_cols=137  Identities=11%  Similarity=0.143  Sum_probs=74.0

Q ss_pred             hcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHhHHHHH
Q 036275           52 SIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEV  131 (271)
Q Consensus        52 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~  131 (271)
                      .|.+++-.++..+...+.   +..-||-+|--....-+-+-..++++.+-+.   -|..          .+|++..+...
T Consensus        15 dG~V~qGveii~k~v~Ss---ni~E~NWvICNiiDaa~C~yvv~~LdsIGki---FDis----------~C~NlKrVi~C   78 (161)
T PF09205_consen   15 DGDVKQGVEIIEKTVNSS---NIKEYNWVICNIIDAADCDYVVETLDSIGKI---FDIS----------KCGNLKRVIEC   78 (161)
T ss_dssp             TT-HHHHHHHHHHHHHHS----HHHHTHHHHHHHHH--HHHHHHHHHHHGGG---S-GG----------G-S-THHHHHH
T ss_pred             hchHHHHHHHHHHHcCcC---CccccceeeeecchhhchhHHHHHHHHHhhh---cCch----------hhcchHHHHHH
Confidence            777888888887776643   4455555555554444444445554444321   1221          23333333333


Q ss_pred             HHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 036275          132 LTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGC  210 (271)
Q Consensus       132 ~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~  210 (271)
                      +-.+     ..+....+..+++....|+-+.-.++..++.+. -.+++...-.+..+|.+.|+..++.+++++.-+.|+
T Consensus        79 ~~~~-----n~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~  151 (161)
T PF09205_consen   79 YAKR-----NKLSEYVDLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACEKGL  151 (161)
T ss_dssp             HHHT-----T---HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred             HHHh-----cchHHHHHHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence            3221     123444566777777788888888888777642 356777777778888888888888888888777774

Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.

>PF13929 mRNA_stabil: mRNA stabilisation

Probab=95.58  E-value=0.94  Score=36.21  Aligned_cols=135  Identities=10%  Similarity=0.034  Sum_probs=81.0

Q ss_pred             HHHHHHHHHHH-CCCCCCHHHHHHHHHHHHc-cC-CHhHHHHHHHHHHhC-CCCCChhhHHHHHHHHHcCCCHHHHHHHH
Q 036275           92 KCEGVINQMHK-SGLKPDTFVINSMLNLYGR-LG-QFEKMEEVLTAMEKG-SYAADISTYNILINIYGRGGFIEKMEGLF  167 (271)
Q Consensus        92 ~a~~~~~~m~~-~~~~~~~~~~~~li~~~~~-~g-~~~~a~~~~~~m~~~-~~~~~~~~~~~li~~~~~~g~~~~a~~~~  167 (271)
                      +|+.+|+.... ..+--|..+...+++.... .+ ....-.++.+.+... |-.++..+...+|..+++.+++.+-.+++
T Consensus       146 ~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~~fW  225 (292)
T PF13929_consen  146 EALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLFQFW  225 (292)
T ss_pred             HHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHHHHH
Confidence            34455542221 2344466666666666654 21 222333333333322 33566777777888888888888888888


Q ss_pred             HhchhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH-----HHCCCCCCHHHHHHHHHHHhc
Q 036275          168 QSLPAK-RLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEM-----IDAGCYPDGGTAKVLISACSS  226 (271)
Q Consensus       168 ~~m~~~-g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m-----~~~~~~p~~~~~~~l~~~~~~  226 (271)
                      +..... +..-|...|..+|+.-...|+..-..++..+-     .+.|+..+...-..+-+.+.+
T Consensus       226 ~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~GhLLwikR~~V~v~~~L~~~L~~LF~~  290 (292)
T PF13929_consen  226 EQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDDGHLLWIKRNNVDVTDELRSQLSELFKK  290 (292)
T ss_pred             HHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhCCCeEEeeecCCcCCHHHHHHHHHHHHh
Confidence            765543 44556677888888888888887777776652     355666676666665555443

>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]

Probab=95.57  E-value=0.2  Score=39.98  Aligned_cols=78  Identities=10%  Similarity=0.066  Sum_probs=41.1

Q ss_pred             hhHHHHHHHHHcCCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCCCCCHHHHHH
Q 036275          145 STYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMID-----AGCYPDGGTAKV  219 (271)
Q Consensus       145 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-----~~~~p~~~~~~~  219 (271)
                      .++..++..+...|+.+.+...++++.... +-+...|..++.+|.+.|+...|...|+.+..     .|+.|...+...
T Consensus       154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~  232 (280)
T COG3629         154 KALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRAL  232 (280)
T ss_pred             HHHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHH
Confidence            344555555555555555555555555442 23445555555555555555555555554432     455555555444


Q ss_pred             HHHH
Q 036275          220 LISA  223 (271)
Q Consensus       220 l~~~  223 (271)
                      ..+.
T Consensus       233 y~~~  236 (280)
T COG3629         233 YEEI  236 (280)
T ss_pred             HHHH
Confidence            4444

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.53  E-value=1.5  Score=39.50  Aligned_cols=81  Identities=9%  Similarity=0.029  Sum_probs=40.5

Q ss_pred             CChhhHHHHHHHHHcCCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 036275          142 ADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLI  221 (271)
Q Consensus       142 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~  221 (271)
                      ||...|-.-+.+++..+++++-+++-+..+      ++.-|...+.+|.+.|+.++|.+.+-+.-.     ..    -..
T Consensus       713 pdKr~~wLk~~aLa~~~kweeLekfAkskk------sPIGy~PFVe~c~~~~n~~EA~KYiprv~~-----l~----ekv  777 (829)
T KOG2280|consen  713 PDKRLWWLKLTALADIKKWEELEKFAKSKK------SPIGYLPFVEACLKQGNKDEAKKYIPRVGG-----LQ----EKV  777 (829)
T ss_pred             cchhhHHHHHHHHHhhhhHHHHHHHHhccC------CCCCchhHHHHHHhcccHHHHhhhhhccCC-----hH----HHH
Confidence            455555555555555555555555444433      233455555556666666666555544211     11    334


Q ss_pred             HHHhccCcHHHHHHHH
Q 036275          222 SACSSEDQIEQVTTLV  237 (271)
Q Consensus       222 ~~~~~~g~~~~a~~~~  237 (271)
                      .+|.+.|++.+|.++-
T Consensus       778 ~ay~~~~~~~eAad~A  793 (829)
T KOG2280|consen  778 KAYLRVGDVKEAADLA  793 (829)
T ss_pred             HHHHHhccHHHHHHHH
Confidence            4455555555555443

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=95.52  E-value=0.38  Score=37.91  Aligned_cols=104  Identities=13%  Similarity=0.116  Sum_probs=61.8

Q ss_pred             hHHHHHHHHHcCCCHHHHHHHHHhchhCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCC-HHHHHHHH
Q 036275          146 TYNILINIYGRGGFIEKMEGLFQSLPAKRL--KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDA-GCYPD-GGTAKVLI  221 (271)
Q Consensus       146 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-~~~p~-~~~~~~l~  221 (271)
                      .|+.-+..+ +.|++.+|...|....+...  .-....+..|..++...|+++.|..+|..+... +-.|- ..++--|.
T Consensus       144 ~Y~~A~~~~-ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg  222 (262)
T COG1729         144 LYNAALDLY-KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG  222 (262)
T ss_pred             HHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence            465554443 44557777777777665421  112335666777777777777777777766542 22222 24455556


Q ss_pred             HHHhccCcHHHHHHHHHHHHhcccchhHH
Q 036275          222 SACSSEDQIEQVTTLVRTMHKDMKTALPI  250 (271)
Q Consensus       222 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~  250 (271)
                      .+....|+.++|...|+++.+..+....+
T Consensus       223 ~~~~~l~~~d~A~atl~qv~k~YP~t~aA  251 (262)
T COG1729         223 VSLGRLGNTDEACATLQQVIKRYPGTDAA  251 (262)
T ss_pred             HHHHHhcCHHHHHHHHHHHHHHCCCCHHH
Confidence            66667777777777777777766655443

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=95.46  E-value=1.5  Score=37.80  Aligned_cols=58  Identities=10%  Similarity=0.071  Sum_probs=35.7

Q ss_pred             HHHHHHHcCCCHHHHHHHHHhchhCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 036275          149 ILINIYGRGGFIEKMEGLFQSLPAKRLK-PDVVTWTSRLAAYSRKKLYRRCLEIFEEMI  206 (271)
Q Consensus       149 ~li~~~~~~g~~~~a~~~~~~m~~~g~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~m~  206 (271)
                      .+..++-+.|+.++|.+.|++|.+.... -+......|+.++...+.+.++..++.+--
T Consensus       264 RLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYd  322 (539)
T PF04184_consen  264 RLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYD  322 (539)
T ss_pred             HHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhc
Confidence            3455555667777777777776643211 123356667777777777777777776643

The molecular function of this protein is uncertain.

>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus

Probab=95.33  E-value=0.62  Score=32.60  Aligned_cols=139  Identities=12%  Similarity=0.058  Sum_probs=78.5

Q ss_pred             hcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHH
Q 036275           86 KTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEG  165 (271)
Q Consensus        86 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~  165 (271)
                      -.|.+++..++..+...+.   +..-+|-+|---...-+=+-..++++.+-+.   .|...          +|++.....
T Consensus        14 ldG~V~qGveii~k~v~Ss---ni~E~NWvICNiiDaa~C~yvv~~LdsIGki---FDis~----------C~NlKrVi~   77 (161)
T PF09205_consen   14 LDGDVKQGVEIIEKTVNSS---NIKEYNWVICNIIDAADCDYVVETLDSIGKI---FDISK----------CGNLKRVIE   77 (161)
T ss_dssp             HTT-HHHHHHHHHHHHHHS----HHHHTHHHHHHHHH--HHHHHHHHHHHGGG---S-GGG-----------S-THHHHH
T ss_pred             HhchHHHHHHHHHHHcCcC---CccccceeeeecchhhchhHHHHHHHHHhhh---cCchh----------hcchHHHHH
Confidence            3466666666666665531   3334444444444444444445555544332   23322          233333333


Q ss_pred             HHHhchhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhccc
Q 036275          166 LFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKDMK  245 (271)
Q Consensus       166 ~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~  245 (271)
                      .+-.+-     .+.......+......|.-+...+++.++...+ .++......+..+|.+.|+..++.+++++.-+.|.
T Consensus        78 C~~~~n-----~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~-~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~  151 (161)
T PF09205_consen   78 CYAKRN-----KLSEYVDLALDILVKQGKKDQLDKIYNELKKNE-EINPEFLVKIANAYKKLGNTREANELLKEACEKGL  151 (161)
T ss_dssp             HHHHTT--------HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred             HHHHhc-----chHHHHHHHHHHHHHhccHHHHHHHHHHHhhcc-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence            322221     144566777888899999999999999987644 78888999999999999999999999999988775


Q ss_pred             c
Q 036275          246 T  246 (271)
Q Consensus       246 ~  246 (271)
                      .
T Consensus       152 k  152 (161)
T PF09205_consen  152 K  152 (161)
T ss_dssp             H
T ss_pred             H
Confidence            4

Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=95.32  E-value=0.62  Score=32.54  Aligned_cols=91  Identities=13%  Similarity=-0.009  Sum_probs=54.9

Q ss_pred             HHHccCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHhchhCCCCCCHHH---HHHHHHHHHhcCC
Q 036275          118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVT---WTSRLAAYSRKKL  194 (271)
Q Consensus       118 ~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~---~~~li~~~~~~g~  194 (271)
                      +.+..|+++.|++.|.+.... .+.....||.-..++--+|+.++|++=+++..+..-.-+...   |-.-...|...|+
T Consensus        52 alaE~g~Ld~AlE~F~qal~l-~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~  130 (175)
T KOG4555|consen   52 ALAEAGDLDGALELFGQALCL-APERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGN  130 (175)
T ss_pred             HHHhccchHHHHHHHHHHHHh-cccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCc
Confidence            345667777777777776664 245567777777777777777777777776655321112222   2222334556677


Q ss_pred             HHHHHHHHHHHHHCC
Q 036275          195 YRRCLEIFEEMIDAG  209 (271)
Q Consensus       195 ~~~a~~~~~~m~~~~  209 (271)
                      .+.|..=|...-+.|
T Consensus       131 dd~AR~DFe~AA~LG  145 (175)
T KOG4555|consen  131 DDAARADFEAAAQLG  145 (175)
T ss_pred             hHHHHHhHHHHHHhC
Confidence            777766666655555

>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=95.28  E-value=0.81  Score=33.68  Aligned_cols=53  Identities=8%  Similarity=0.020  Sum_probs=23.0

Q ss_pred             HcCCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 036275          155 GRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMID  207 (271)
Q Consensus       155 ~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  207 (271)
                      ...|-+++...-.+.+...+-+.-...-..|.-+-.+.|++..|.+.|..+..
T Consensus       143 vD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~  195 (221)
T COG4649         143 VDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN  195 (221)
T ss_pred             hccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence            34444555444444444333222222333344444445555555555554443

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=95.14  E-value=1.3  Score=36.64  Aligned_cols=221  Identities=13%  Similarity=0.011  Sum_probs=98.4

Q ss_pred             HHHH-hcCHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHhcCChHHHHHHHH-HH---HHCC-CCCCHHHHHHHHHHH
Q 036275           48 VFIF-SIYFSDAHAVFEEMKRL--GITPTMKSHMLLLTAYSKTGNVAKCEGVIN-QM---HKSG-LKPDTFVINSMLNLY  119 (271)
Q Consensus        48 l~~~-~g~~~~A~~~~~~~~~~--~~~~~~~~~~~li~~~~~~~~~~~a~~~~~-~m---~~~~-~~~~~~~~~~li~~~  119 (271)
                      +..| ..+.++|+..|.....+  +..---.+|..+..+.++.|.+++++..-- +|   .+.. -..--..|..|.+++
T Consensus        14 ~~Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~   93 (518)
T KOG1941|consen   14 LQLYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSN   93 (518)
T ss_pred             HhHhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3445 66666666666655432  111122344555555666665555443321 11   1100 001112344444555


Q ss_pred             HccCCHhHHHHHHHHHHhC-CCCC---ChhhHHHHHHHHHcCCCHHHHHHHHHhchhCC-----CCCCHHHHHHHHHHHH
Q 036275          120 GRLGQFEKMEEVLTAMEKG-SYAA---DISTYNILINIYGRGGFIEKMEGLFQSLPAKR-----LKPDVVTWTSRLAAYS  190 (271)
Q Consensus       120 ~~~g~~~~a~~~~~~m~~~-~~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g-----~~~~~~~~~~li~~~~  190 (271)
                      -+..++.+++.+-..-... |..|   .-...-++..++...+.++++++.|+.....-     .......|-.|-.-|.
T Consensus        94 e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~  173 (518)
T KOG1941|consen   94 EKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFA  173 (518)
T ss_pred             HHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHH
Confidence            5555555555444332221 1111   11222335555555666666666666544210     1112235556666666


Q ss_pred             hcCCHHHHHHHHHHHHH----CCCCCCHHHH-----HHHHHHHhccCcHHHHHHHHHHHHh----cccch-----hHHHH
Q 036275          191 RKKLYRRCLEIFEEMID----AGCYPDGGTA-----KVLISACSSEDQIEQVTTLVRTMHK----DMKTA-----LPIYF  252 (271)
Q Consensus       191 ~~g~~~~a~~~~~~m~~----~~~~p~~~~~-----~~l~~~~~~~g~~~~a~~~~~~~~~----~~~~~-----~~~~~  252 (271)
                      +..|+++|.-+.....+    .++.--..-|     -.+.-++...|.+-.|.+..++..+    .|...     ...+.
T Consensus       174 ~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~a  253 (518)
T KOG1941|consen  174 QLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFA  253 (518)
T ss_pred             HHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHH
Confidence            66666666554443322    2211101111     1223334555666556555555432    22222     12345


Q ss_pred             HHHhhccccccchhhh
Q 036275          253 NLYGEKGVARSNLGQY  268 (271)
Q Consensus       253 ~~~~~~G~~~~a~~~~  268 (271)
                      ++|...|+.+.|..+|
T Consensus       254 DIyR~~gd~e~af~rY  269 (518)
T KOG1941|consen  254 DIYRSRGDLERAFRRY  269 (518)
T ss_pred             HHHHhcccHhHHHHHH
Confidence            6666666666666555

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=95.10  E-value=1.4  Score=35.33  Aligned_cols=142  Identities=13%  Similarity=0.151  Sum_probs=75.9

Q ss_pred             HHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHH
Q 036275           82 TAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIE  161 (271)
Q Consensus        82 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~  161 (271)
                      ......|++.+|...|+........ +...--.+..+|...|+.+.|..++..+...--.........-|..+.+.....
T Consensus       142 ~~~~~~e~~~~a~~~~~~al~~~~~-~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~  220 (304)
T COG3118         142 KELIEAEDFGEAAPLLKQALQAAPE-NSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATP  220 (304)
T ss_pred             hhhhhccchhhHHHHHHHHHHhCcc-cchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCC
Confidence            3445667777777777666655322 233444566677777777777777766654311111222223344444444444


Q ss_pred             HHHHHHHhchhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--CCCCCCHHHHHHHHHHHhccC
Q 036275          162 KMEGLFQSLPAKRLKP-DVVTWTSRLAAYSRKKLYRRCLEIFEEMID--AGCYPDGGTAKVLISACSSED  228 (271)
Q Consensus       162 ~a~~~~~~m~~~g~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~--~~~~p~~~~~~~l~~~~~~~g  228 (271)
                      +...+-.+....   | |...-..+...+...|+.++|.+.+-.+..  .|. -|...-..++..+.-.|
T Consensus       221 ~~~~l~~~~aad---Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~-~d~~~Rk~lle~f~~~g  286 (304)
T COG3118         221 EIQDLQRRLAAD---PDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGF-EDGEARKTLLELFEAFG  286 (304)
T ss_pred             CHHHHHHHHHhC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccc-cCcHHHHHHHHHHHhcC
Confidence            444444444432   3 455555666666777777777666555543  232 23444455555554444

>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]

Probab=95.00  E-value=0.53  Score=37.60  Aligned_cols=81  Identities=12%  Similarity=0.063  Sum_probs=67.4

Q ss_pred             HHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHhchh-----CCCCCCHHHHH
Q 036275          109 TFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPA-----KRLKPDVVTWT  183 (271)
Q Consensus       109 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-----~g~~~~~~~~~  183 (271)
                      ..++..++..+...|+.+.+...++++.... +-+...|..++.+|.+.|+...|++.++++..     .|+.|...+..
T Consensus       153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~  231 (280)
T COG3629         153 IKALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRA  231 (280)
T ss_pred             HHHHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHH
Confidence            3467888999999999999999999988873 56788899999999999999999999888764     68889888877


Q ss_pred             HHHHHHH
Q 036275          184 SRLAAYS  190 (271)
Q Consensus       184 ~li~~~~  190 (271)
                      .......
T Consensus       232 ~y~~~~~  238 (280)
T COG3629         232 LYEEILR  238 (280)
T ss_pred             HHHHHhc
Confidence            7777743

>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia

Probab=94.98  E-value=0.95  Score=32.84  Aligned_cols=54  Identities=17%  Similarity=0.092  Sum_probs=31.4

Q ss_pred             HHHccCCHhHHHHHHHHHHhCCCCCChhhH-HHHHHHHHcCCCHHHHHHHHHhchhC
Q 036275          118 LYGRLGQFEKMEEVLTAMEKGSYAADISTY-NILINIYGRGGFIEKMEGLFQSLPAK  173 (271)
Q Consensus       118 ~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~-~~li~~~~~~g~~~~a~~~~~~m~~~  173 (271)
                      .-.+.++.+++..+++-+.--  .|..... ..-...+...|++.+|.++|+++...
T Consensus        19 ~al~~~~~~D~e~lL~ALrvL--RP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~   73 (160)
T PF09613_consen   19 VALRLGDPDDAEALLDALRVL--RPEFPELDLFDGWLHIVRGDWDDALRLLRELEER   73 (160)
T ss_pred             HHHccCChHHHHHHHHHHHHh--CCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhcc
Confidence            344566777777777776653  2332211 12233356677777777777776654

>PRK11906 transcriptional regulator; Provisional

Probab=94.97  E-value=2.1  Score=36.69  Aligned_cols=78  Identities=14%  Similarity=0.008  Sum_probs=37.3

Q ss_pred             HHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHhch
Q 036275           92 KCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLP  171 (271)
Q Consensus        92 ~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~  171 (271)
                      +|.++-++..+.+ .-|......+..+..-.++++.|...|++....+ |-...+|........-+|+.++|.+.+++..
T Consensus       322 ~a~~~A~rAveld-~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~-Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~al  399 (458)
T PRK11906        322 KALELLDYVSDIT-TVDGKILAIMGLITGLSGQAKVSHILFEQAKIHS-TDIASLYYYRALVHFHNEKIEEARICIDKSL  399 (458)
T ss_pred             HHHHHHHHHHhcC-CCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcC-CccHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence            4444444444443 2244444444444445555555555555555542 2223444444444445555555555555533

>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]

Probab=94.96  E-value=2.2  Score=36.97  Aligned_cols=164  Identities=11%  Similarity=0.110  Sum_probs=102.0

Q ss_pred             CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChhhHHHHH
Q 036275           72 PTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILI  151 (271)
Q Consensus        72 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li  151 (271)
                      .|....-+++..+.....++-++.+..+|...|  -+...|..++..|... ..+.-..+|+++.+..+ .|++.-..|.
T Consensus        64 l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~df-nDvv~~ReLa  139 (711)
T COG1747          64 LDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDF-NDVVIGRELA  139 (711)
T ss_pred             ccchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcc-hhHHHHHHHH
Confidence            344455677777888878888888888888765  3666777888888777 45667778887777643 2333334444


Q ss_pred             HHHHcCCCHHHHHHHHHhchhCCCCC------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-CCCCCCHHHHHHHHHHH
Q 036275          152 NIYGRGGFIEKMEGLFQSLPAKRLKP------DVVTWTSRLAAYSRKKLYRRCLEIFEEMID-AGCYPDGGTAKVLISAC  224 (271)
Q Consensus       152 ~~~~~~g~~~~a~~~~~~m~~~g~~~------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-~~~~p~~~~~~~l~~~~  224 (271)
                      ..|-+ ++.+++...|..+... +.|      =...|..++..-  ..+.+....+...... .|...-...+.-+..-|
T Consensus       140 ~~yEk-ik~sk~a~~f~Ka~yr-fI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Y  215 (711)
T COG1747         140 DKYEK-IKKSKAAEFFGKALYR-FIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKY  215 (711)
T ss_pred             HHHHH-hchhhHHHHHHHHHHH-hcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHh
Confidence            44444 7777777777765533 111      112444444321  3455666666666554 44444555666666777


Q ss_pred             hccCcHHHHHHHHHHHHhc
Q 036275          225 SSEDQIEQVTTLVRTMHKD  243 (271)
Q Consensus       225 ~~~g~~~~a~~~~~~~~~~  243 (271)
                      ....++++|.++++.+.+.
T Consensus       216 s~~eN~~eai~Ilk~il~~  234 (711)
T COG1747         216 SENENWTEAIRILKHILEH  234 (711)
T ss_pred             ccccCHHHHHHHHHHHhhh
Confidence            7777777777777766543

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=94.93  E-value=0.64  Score=32.49  Aligned_cols=94  Identities=9%  Similarity=-0.039  Sum_probs=71.8

Q ss_pred             HHHHHcCCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-CCCCCCHHH---HHHHHHHHhc
Q 036275          151 INIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMID-AGCYPDGGT---AKVLISACSS  226 (271)
Q Consensus       151 i~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-~~~~p~~~~---~~~l~~~~~~  226 (271)
                      .-+.+..|+++.|++.|.+.... .+-....||.-.+++.-.|+.++|+.=+++.++ .|-. +...   |..-...|..
T Consensus        50 ~valaE~g~Ld~AlE~F~qal~l-~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~-trtacqa~vQRg~lyRl  127 (175)
T KOG4555|consen   50 AIALAEAGDLDGALELFGQALCL-APERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQ-TRTACQAFVQRGLLYRL  127 (175)
T ss_pred             HHHHHhccchHHHHHHHHHHHHh-cccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHHH
Confidence            34678899999999999998765 233678999999999999999999999999887 3422 3322   2222334778


Q ss_pred             cCcHHHHHHHHHHHHhcccc
Q 036275          227 EDQIEQVTTLVRTMHKDMKT  246 (271)
Q Consensus       227 ~g~~~~a~~~~~~~~~~~~~  246 (271)
                      .|+.+.|..=|+...+-|.+
T Consensus       128 ~g~dd~AR~DFe~AA~LGS~  147 (175)
T KOG4555|consen  128 LGNDDAARADFEAAAQLGSK  147 (175)
T ss_pred             hCchHHHHHhHHHHHHhCCH
Confidence            89999999999988766644

>KOG2610 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.91  E-value=1.4  Score=36.09  Aligned_cols=153  Identities=7%  Similarity=-0.065  Sum_probs=107.7

Q ss_pred             HHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCCh----hhHHHHHHHHHcCCC
Q 036275           84 YSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADI----STYNILINIYGRGGF  159 (271)
Q Consensus        84 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~----~~~~~li~~~~~~g~  159 (271)
                      ....|++.+|-..|+++.+.- +.|...++..=++|.-.|+.+.....++++...- .+|.    ..-..+.-++...|-
T Consensus       113 ~~~~g~~h~a~~~wdklL~d~-PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~w-n~dlp~~sYv~GmyaFgL~E~g~  190 (491)
T KOG2610|consen  113 LWGRGKHHEAAIEWDKLLDDY-PTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKW-NADLPCYSYVHGMYAFGLEECGI  190 (491)
T ss_pred             hhccccccHHHHHHHHHHHhC-chhhhhhhhhhhHHHhccchhhhhhHHHHhcccc-CCCCcHHHHHHHHHHhhHHHhcc
Confidence            345678888888899988863 5577778888889999999999999998887651 3343    333344445668999


Q ss_pred             HHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC---CCCCCHHHHHHHHHHHhccCcHHHHHHH
Q 036275          160 IEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDA---GCYPDGGTAKVLISACSSEDQIEQVTTL  236 (271)
Q Consensus       160 ~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~---~~~p~~~~~~~l~~~~~~~g~~~~a~~~  236 (271)
                      +++|++.-++..+.+ +.|.-.-.+....+--.|++.++.++..+-...   +--.-.+.|-...-.+...+.++.|+++
T Consensus       191 y~dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleI  269 (491)
T KOG2610|consen  191 YDDAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEI  269 (491)
T ss_pred             chhHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHH
Confidence            999999999887764 345556667777777889999998887654321   1111223344444456667899999999


Q ss_pred             HHH
Q 036275          237 VRT  239 (271)
Q Consensus       237 ~~~  239 (271)
                      |+.
T Consensus       270 yD~  272 (491)
T KOG2610|consen  270 YDR  272 (491)
T ss_pred             HHH
Confidence            884

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=94.81  E-value=0.12  Score=28.40  Aligned_cols=24  Identities=29%  Similarity=0.433  Sum_probs=10.1

Q ss_pred             HHHHHHHccCCHhHHHHHHHHHHh
Q 036275          114 SMLNLYGRLGQFEKMEEVLTAMEK  137 (271)
Q Consensus       114 ~li~~~~~~g~~~~a~~~~~~m~~  137 (271)
                      .+...|...|++++|+++|++..+
T Consensus         6 ~la~~~~~~G~~~~A~~~~~~~l~   29 (44)
T PF13428_consen    6 ALARAYRRLGQPDEAERLLRRALA   29 (44)
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHH
Confidence            334444444444444444444443

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=94.78  E-value=1.8  Score=34.92  Aligned_cols=161  Identities=12%  Similarity=0.068  Sum_probs=100.9

Q ss_pred             hcCHHHHHHHHHHHHHcCCCCCHHHHHHHH-------HHHHhcC-ChHHHHHHHHHHHHC--------CCCCCH-----H
Q 036275           52 SIYFSDAHAVFEEMKRLGITPTMKSHMLLL-------TAYSKTG-NVAKCEGVINQMHKS--------GLKPDT-----F  110 (271)
Q Consensus        52 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li-------~~~~~~~-~~~~a~~~~~~m~~~--------~~~~~~-----~  110 (271)
                      .|+++.|..++.+........++.....+.       ....+.+ +++.|..++++..+.        ...|+.     .
T Consensus         6 ~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~~   85 (278)
T PF08631_consen    6 QGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRLS   85 (278)
T ss_pred             hCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHHH
Confidence            789999999999986643122333222222       2233455 888887777665432        123333     4


Q ss_pred             HHHHHHHHHHccCCHhH---HHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHhchhCCCCCCHHHHHHHHH
Q 036275          111 VINSMLNLYGRLGQFEK---MEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLA  187 (271)
Q Consensus       111 ~~~~li~~~~~~g~~~~---a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~  187 (271)
                      +...++.+|...+..+.   |..+++.+... ++..+.++-.-+..+.+.++.+++.+++.+|...- ......+...+.
T Consensus        86 iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e-~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~-~~~e~~~~~~l~  163 (278)
T PF08631_consen   86 ILRLLANAYLEWDTYESVEKALNALRLLESE-YGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSV-DHSESNFDSILH  163 (278)
T ss_pred             HHHHHHHHHHcCCChHHHHHHHHHHHHHHHh-CCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhc-ccccchHHHHHH
Confidence            56778888888887654   55566666443 33346667677888888999999999999998762 213445666555


Q ss_pred             HH---HhcCCHHHHHHHHHHHHHCCCCCCHH
Q 036275          188 AY---SRKKLYRRCLEIFEEMIDAGCYPDGG  215 (271)
Q Consensus       188 ~~---~~~g~~~~a~~~~~~m~~~~~~p~~~  215 (271)
                      .+   .. .....|...+..+....+.|...
T Consensus       164 ~i~~l~~-~~~~~a~~~ld~~l~~r~~~~~~  193 (278)
T PF08631_consen  164 HIKQLAE-KSPELAAFCLDYLLLNRFKSSED  193 (278)
T ss_pred             HHHHHHh-hCcHHHHHHHHHHHHHHhCCChh
Confidence            55   33 33456777777766554555553

It is also involved in sporulation [].

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=94.61  E-value=1.4  Score=33.05  Aligned_cols=191  Identities=13%  Similarity=0.055  Sum_probs=100.3

Q ss_pred             hcCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH-HHHccCCHhHHH
Q 036275           52 SIYFSDAHAVFEEMKRL-GITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN-LYGRLGQFEKME  129 (271)
Q Consensus        52 ~g~~~~A~~~~~~~~~~-~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~-~~~~~g~~~~a~  129 (271)
                      .+.+..+...+...... ........+......+...++...+...+.........+ ......... .+...|+++.+.
T Consensus        72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~  150 (291)
T COG0457          72 LGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDP-DLAEALLALGALYELGDYEEAL  150 (291)
T ss_pred             cccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCc-chHHHHHHHHHHHHcCCHHHHH
Confidence            55666666666655442 223445555555566666666666666666666543332 111112222 566667777777


Q ss_pred             HHHHHHHhCCC--CCChhhHHHHHHHHHcCCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 036275          130 EVLTAMEKGSY--AADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMID  207 (271)
Q Consensus       130 ~~~~~m~~~~~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  207 (271)
                      ..+++.....-  ......+......+...++.+.+...+..............+..+...+...++.+.+...+.....
T Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~  230 (291)
T COG0457         151 ELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALE  230 (291)
T ss_pred             HHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHh
Confidence            77766644210  0123333334444556666677776666665542111245566666666666666666666666655


Q ss_pred             CCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHHHhccc
Q 036275          208 AGCYPD-GGTAKVLISACSSEDQIEQVTTLVRTMHKDMK  245 (271)
Q Consensus       208 ~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~  245 (271)
                      ..  |+ ...+..+...+...+..+.+...+.+..+..+
T Consensus       231 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (291)
T COG0457         231 LD--PDNAEALYNLALLLLELGRYEEALEALEKALELDP  267 (291)
T ss_pred             hC--cccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCc
Confidence            42  22 23333333333355556666666666554443

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=94.58  E-value=0.19  Score=27.62  Aligned_cols=30  Identities=17%  Similarity=0.295  Sum_probs=21.7

Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 036275           75 KSHMLLLTAYSKTGNVAKCEGVINQMHKSG  104 (271)
Q Consensus        75 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~  104 (271)
                      .++..+...|...|++++|.++|++..+..
T Consensus         2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~   31 (44)
T PF13428_consen    2 AAWLALARAYRRLGQPDEAERLLRRALALD   31 (44)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence            356667777777777777777777777763

>KOG4570 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.53  E-value=0.53  Score=37.97  Aligned_cols=102  Identities=13%  Similarity=0.177  Sum_probs=60.0

Q ss_pred             CCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhC---CCCCChhhHHHHHHHHHcCCCHHHHHHHHHhchhCCCCCCHH
Q 036275          104 GLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKG---SYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVV  180 (271)
Q Consensus       104 ~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~---~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~  180 (271)
                      |.+.+..+...++..--...+++.++.++-.+...   ...|+...+ +.++.+. .-+.++++-++..=.+-|+-||..
T Consensus        59 g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~-~~irlll-ky~pq~~i~~l~npIqYGiF~dqf  136 (418)
T KOG4570|consen   59 GLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIH-TWIRLLL-KYDPQKAIYTLVNPIQYGIFPDQF  136 (418)
T ss_pred             CCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHH-HHHHHHH-ccChHHHHHHHhCcchhccccchh
Confidence            44445555555665555566677777776666543   112222222 2222222 234556777766666777777777


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 036275          181 TWTSRLAAYSRKKLYRRCLEIFEEMID  207 (271)
Q Consensus       181 ~~~~li~~~~~~g~~~~a~~~~~~m~~  207 (271)
                      +++.+|..+.+.+++.+|.++.-.|..
T Consensus       137 ~~c~l~D~flk~~n~~~aa~vvt~~~~  163 (418)
T KOG4570|consen  137 TFCLLMDSFLKKENYKDAASVVTEVMM  163 (418)
T ss_pred             hHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence            777777777777777777776666554

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=94.43  E-value=0.74  Score=34.29  Aligned_cols=97  Identities=11%  Similarity=0.121  Sum_probs=57.2

Q ss_pred             HHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCC--hhhHHHHHHHHHcCCCHHHHHHHHHhchhCCCCCC-HHHHH--H
Q 036275          110 FVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAAD--ISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPD-VVTWT--S  184 (271)
Q Consensus       110 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~-~~~~~--~  184 (271)
                      ..+..+.+.|++.|+.+.|.+.+.++.+....+.  ...+-.+|....-.+++..+...+.+....--.+. ...-+  .
T Consensus        37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk  116 (177)
T PF10602_consen   37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK  116 (177)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence            3466777778888888888888887776644433  34556677777777787777777766553211111 11111  1


Q ss_pred             HHH--HHHhcCCHHHHHHHHHHHH
Q 036275          185 RLA--AYSRKKLYRRCLEIFEEMI  206 (271)
Q Consensus       185 li~--~~~~~g~~~~a~~~~~~m~  206 (271)
                      ...  .+...+++.+|-+.|-...
T Consensus       117 ~~~gL~~l~~r~f~~AA~~fl~~~  140 (177)
T PF10602_consen  117 VYEGLANLAQRDFKEAAELFLDSL  140 (177)
T ss_pred             HHHHHHHHHhchHHHHHHHHHccC
Confidence            111  1234567777766665543

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia

Probab=94.17  E-value=1.5  Score=31.78  Aligned_cols=50  Identities=12%  Similarity=0.068  Sum_probs=24.9

Q ss_pred             hcCHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 036275           52 SIYFSDAHAVFEEMKRLGI-TPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKS  103 (271)
Q Consensus        52 ~g~~~~A~~~~~~~~~~~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~  103 (271)
                      .++.+++..+++-+.-..- .+...++..  ..+...|+|.+|..+|+++.+.
T Consensus        23 ~~~~~D~e~lL~ALrvLRP~~~e~~~~~~--~l~i~r~~w~dA~rlLr~l~~~   73 (160)
T PF09613_consen   23 LGDPDDAEALLDALRVLRPEFPELDLFDG--WLHIVRGDWDDALRLLRELEER   73 (160)
T ss_pred             cCChHHHHHHHHHHHHhCCCchHHHHHHH--HHHHHhCCHHHHHHHHHHHhcc
Confidence            5566666666666554320 112222222  2245566666666666665544

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=94.11  E-value=2.7  Score=40.10  Aligned_cols=90  Identities=12%  Similarity=0.078  Sum_probs=60.9

Q ss_pred             CCCHHHHHHHH----HHHHccCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHhchhCCCCCCH--
Q 036275          106 KPDTFVINSML----NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDV--  179 (271)
Q Consensus       106 ~~~~~~~~~li----~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~--  179 (271)
                      .|+...+..+.    +.+...+.+++|.-.|+..-+.         .-.+.+|..+|+|.+|+.+..++....   +.  
T Consensus       932 ~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gkl---------ekAl~a~~~~~dWr~~l~~a~ql~~~~---de~~  999 (1265)
T KOG1920|consen  932 KPDSEKQKVIYEAYADHLREELMSDEAALMYERCGKL---------EKALKAYKECGDWREALSLAAQLSEGK---DELV  999 (1265)
T ss_pred             ccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhccH---------HHHHHHHHHhccHHHHHHHHHhhcCCH---HHHH
Confidence            45655544444    4445567777777777655332         356778888899999988888776431   22  


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 036275          180 VTWTSRLAAYSRKKLYRRCLEIFEEMID  207 (271)
Q Consensus       180 ~~~~~li~~~~~~g~~~~a~~~~~~m~~  207 (271)
                      .+-..|+.-+...+++-+|-++..+-..
T Consensus      1000 ~~a~~L~s~L~e~~kh~eAa~il~e~~s 1027 (1265)
T KOG1920|consen 1000 ILAEELVSRLVEQRKHYEAAKILLEYLS 1027 (1265)
T ss_pred             HHHHHHHHHHHHcccchhHHHHHHHHhc
Confidence            2236777888889999888888877654

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=94.03  E-value=3.3  Score=34.95  Aligned_cols=164  Identities=10%  Similarity=-0.024  Sum_probs=100.2

Q ss_pred             HHHHHHHH-HHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH--HHHccCCHhHHHHHHHHHHhCCCCCChhhH---
Q 036275           74 MKSHMLLL-TAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN--LYGRLGQFEKMEEVLTAMEKGSYAADISTY---  147 (271)
Q Consensus        74 ~~~~~~li-~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~--~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~---  147 (271)
                      -.+|..+- .++.-.|+.++|..+--..++..- .+.  +...++  ++.-.++.+.+...|++....+  |+...-   
T Consensus       168 c~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~-~n~--~al~vrg~~~yy~~~~~ka~~hf~qal~ld--pdh~~sk~~  242 (486)
T KOG0550|consen  168 CFKAKLLKAECLAFLGDYDEAQSEAIDILKLDA-TNA--EALYVRGLCLYYNDNADKAINHFQQALRLD--PDHQKSKSA  242 (486)
T ss_pred             hhHHHHhhhhhhhhcccchhHHHHHHHHHhccc-chh--HHHHhcccccccccchHHHHHHHhhhhccC--hhhhhHHhH
Confidence            34444333 334456888888887766665531 122  233333  3445677888888888777653  443322   


Q ss_pred             ----------HHHHHHHHcCCCHHHHHHHHHhchhC---CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 036275          148 ----------NILINIYGRGGFIEKMEGLFQSLPAK---RLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDG  214 (271)
Q Consensus       148 ----------~~li~~~~~~g~~~~a~~~~~~m~~~---g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~  214 (271)
                                ..-.+-..+.|++.+|.+.+.+....   ...|+...|........+.|+..+|..--++.....   +.
T Consensus       243 ~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD---~s  319 (486)
T KOG0550|consen  243 SMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKID---SS  319 (486)
T ss_pred             hhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcC---HH
Confidence                      12233456788888898888887653   345566677777777888888888888777766432   12


Q ss_pred             HHHHHHH--HHHhccCcHHHHHHHHHHHHhccc
Q 036275          215 GTAKVLI--SACSSEDQIEQVTTLVRTMHKDMK  245 (271)
Q Consensus       215 ~~~~~l~--~~~~~~g~~~~a~~~~~~~~~~~~  245 (271)
                      .+...+.  .++...+++++|.+-+++..+...
T Consensus       320 yikall~ra~c~l~le~~e~AV~d~~~a~q~~~  352 (486)
T KOG0550|consen  320 YIKALLRRANCHLALEKWEEAVEDYEKAMQLEK  352 (486)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence            2222333  335667888888888887765443

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=93.81  E-value=2.1  Score=32.05  Aligned_cols=212  Identities=16%  Similarity=0.018  Sum_probs=148.0

Q ss_pred             cCHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHccCCHhHHHH
Q 036275           53 IYFSDAHAVFEEMKRLGIT-PTMKSHMLLLTAYSKTGNVAKCEGVINQMHKS-GLKPDTFVINSMLNLYGRLGQFEKMEE  130 (271)
Q Consensus        53 g~~~~A~~~~~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-~~~~~~~~~~~li~~~~~~g~~~~a~~  130 (271)
                      +....+...+......... .....+......+...+.+..+...+...... ........+..+...+...++...+.+
T Consensus        37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  116 (291)
T COG0457          37 GELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALE  116 (291)
T ss_pred             hhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHH
Confidence            5566666666666555422 13677888888899999999999998887753 234456677778888888899999999


Q ss_pred             HHHHHHhCCCCCChhhHHHHHH-HHHcCCCHHHHHHHHHhchhCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 036275          131 VLTAMEKGSYAADISTYNILIN-IYGRGGFIEKMEGLFQSLPAKRL--KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMID  207 (271)
Q Consensus       131 ~~~~m~~~~~~~~~~~~~~li~-~~~~~g~~~~a~~~~~~m~~~g~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  207 (271)
                      .+.........+ ......... .+...|+++.|...+.+......  ......+......+...++.+.+...+.....
T Consensus       117 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~  195 (291)
T COG0457         117 LLEKALALDPDP-DLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALK  195 (291)
T ss_pred             HHHHHHcCCCCc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHh
Confidence            999988764322 222333333 79999999999999999855321  12334455555557788999999999999887


Q ss_pred             CCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHHHhcccc---hhHHHHHHHhhccccccchh
Q 036275          208 AGCYP-DGGTAKVLISACSSEDQIEQVTTLVRTMHKDMKT---ALPIYFNLYGEKGVARSNLG  266 (271)
Q Consensus       208 ~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~---~~~~~~~~~~~~G~~~~a~~  266 (271)
                      .. .. ....+..+...+...++.+.+...+.......+.   ........+...|..+++..
T Consensus       196 ~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  257 (291)
T COG0457         196 LN-PDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALE  257 (291)
T ss_pred             hC-cccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHH
Confidence            63 33 4677888888888889999999999998876654   22222333335554554443

>KOG4570 consensus Uncharacterized conserved protein [Function unknown]

Probab=93.71  E-value=2  Score=34.80  Aligned_cols=103  Identities=11%  Similarity=0.078  Sum_probs=77.8

Q ss_pred             CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCC---CCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChh
Q 036275           69 GITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSG---LKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADIS  145 (271)
Q Consensus        69 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~---~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~  145 (271)
                      |.+.++.+-..++..-....+.+.++..+-+++.+-   ..|+... .++++.+.+ -++++++.++..-.+.|+.||..
T Consensus        59 g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~-~~~irlllk-y~pq~~i~~l~npIqYGiF~dqf  136 (418)
T KOG4570|consen   59 GLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTI-HTWIRLLLK-YDPQKAIYTLVNPIQYGIFPDQF  136 (418)
T ss_pred             CCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccH-HHHHHHHHc-cChHHHHHHHhCcchhccccchh
Confidence            455666666677777777788999999888887651   2222222 234454443 45779999999889999999999


Q ss_pred             hHHHHHHHHHcCCCHHHHHHHHHhchhC
Q 036275          146 TYNILINIYGRGGFIEKMEGLFQSLPAK  173 (271)
Q Consensus       146 ~~~~li~~~~~~g~~~~a~~~~~~m~~~  173 (271)
                      +++.+|+.+.+.+++.+|.++...|...
T Consensus       137 ~~c~l~D~flk~~n~~~aa~vvt~~~~q  164 (418)
T KOG4570|consen  137 TFCLLMDSFLKKENYKDAASVVTEVMMQ  164 (418)
T ss_pred             hHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence            9999999999999999999988887654

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=93.70  E-value=4.3  Score=35.18  Aligned_cols=145  Identities=12%  Similarity=0.134  Sum_probs=88.7

Q ss_pred             chHHHHHH-hcCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHCC-----------------
Q 036275           44 PNLFVFIF-SIYFSDAHAVFEEMKRLGITPT-MKSHMLLLTAYSKTGNVAKCEGVINQMHKSG-----------------  104 (271)
Q Consensus        44 y~~ll~~~-~g~~~~A~~~~~~~~~~~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~-----------------  104 (271)
                      +..+-.+. ..+...-++.-++..+..  |+ +..|..|.  --......+++++|++..+.|                 
T Consensus       172 q~IMq~AWRERnp~aRIkaA~eALei~--pdCAdAYILLA--EEeA~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~  247 (539)
T PF04184_consen  172 QEIMQKAWRERNPQARIKAAKEALEIN--PDCADAYILLA--EEEASTIVEAEELLRQAVKAGEASLGKSQFLQHHGHFW  247 (539)
T ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHhh--hhhhHHHhhcc--cccccCHHHHHHHHHHHHHHHHHhhchhhhhhcccchh
Confidence            66667777 666666666666665543  33 23332222  223344677777777665321                 


Q ss_pred             -------CCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhCC-CCCChhhHHHHHHHHHcCCCHHHHHHHHHhchhCCCC
Q 036275          105 -------LKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGS-YAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK  176 (271)
Q Consensus       105 -------~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~-~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~  176 (271)
                             ..|-..+-..+..++.+.|+.++|++.+.+|.+.. ..........|+.++...+.+.++..++.+-.....+
T Consensus       248 e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lp  327 (539)
T PF04184_consen  248 EAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLP  327 (539)
T ss_pred             hhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCC
Confidence                   01112222346666778899999999999997642 1123457778999999999999999999987544332


Q ss_pred             CC-HHHHHHHHHHHHhc
Q 036275          177 PD-VVTWTSRLAAYSRK  192 (271)
Q Consensus       177 ~~-~~~~~~li~~~~~~  192 (271)
                      .+ ...|+..+-.+...
T Consensus       328 kSAti~YTaALLkaRav  344 (539)
T PF04184_consen  328 KSATICYTAALLKARAV  344 (539)
T ss_pred             chHHHHHHHHHHHHHhh
Confidence            22 34677666443333

The molecular function of this protein is uncertain.

>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed

Probab=93.65  E-value=1  Score=34.03  Aligned_cols=79  Identities=11%  Similarity=-0.053  Sum_probs=59.4

Q ss_pred             HhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhC---CCCCChhhHHHHHHHHHcCCCHH
Q 036275           85 SKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKG---SYAADISTYNILINIYGRGGFIE  161 (271)
Q Consensus        85 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~---~~~~~~~~~~~li~~~~~~g~~~  161 (271)
                      .....-+.|...|-++...+.--|+..-..|...|. ..+.++++.++-...+.   +-.+|+..+..|+..|.+.|+++
T Consensus       117 Wsr~~d~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e  195 (203)
T PF11207_consen  117 WSRFGDQEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYE  195 (203)
T ss_pred             hhccCcHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchh
Confidence            334345788888888888876656666666655555 67789999998877653   33578999999999999999998


Q ss_pred             HHH
Q 036275          162 KME  164 (271)
Q Consensus       162 ~a~  164 (271)
                      .|.
T Consensus       196 ~AY  198 (203)
T PF11207_consen  196 QAY  198 (203)
T ss_pred             hhh
Confidence            874

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=93.64  E-value=0.21  Score=26.09  Aligned_cols=23  Identities=22%  Similarity=0.151  Sum_probs=11.2

Q ss_pred             HHHHHHHHHhcCChHHHHHHHHH
Q 036275           77 HMLLLTAYSKTGNVAKCEGVINQ   99 (271)
Q Consensus        77 ~~~li~~~~~~~~~~~a~~~~~~   99 (271)
                      |..|...|.+.|++++|+++|++
T Consensus         2 l~~Lg~~~~~~g~~~~Ai~~y~~   24 (36)
T PF13176_consen    2 LNNLGRIYRQQGDYEKAIEYYEQ   24 (36)
T ss_dssp             HHHHHHHHHHCT-HHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHH
Confidence            34445555555555555555544

>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length

Probab=93.59  E-value=4.2  Score=34.78  Aligned_cols=110  Identities=13%  Similarity=0.106  Sum_probs=58.3

Q ss_pred             chHHHHHH-hcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH--HHhcCChHHHHHHHHHHHHC--CCCC-----------
Q 036275           44 PNLFVFIF-SIYFSDAHAVFEEMKRLGITPTMKSHMLLLTA--YSKTGNVAKCEGVINQMHKS--GLKP-----------  107 (271)
Q Consensus        44 y~~ll~~~-~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~--~~~~~~~~~a~~~~~~m~~~--~~~~-----------  107 (271)
                      -+.++.+| .++.+.....+....+..  | ...|-.+..+  +.+.+.+.+|.+.+..-.+.  +..|           
T Consensus        49 ~grilnAffl~nld~Me~~l~~l~~~~--~-~s~~l~LF~~L~~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~  125 (549)
T PF07079_consen   49 GGRILNAFFLNNLDLMEKQLMELRQQF--G-KSAYLPLFKALVAYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLF  125 (549)
T ss_pred             hhHHHHHHHHhhHHHHHHHHHHHHHhc--C-CchHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHh
Confidence            45566666 666666666666665542  1 1223333332  33556666666666554443  2111           


Q ss_pred             -CHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCC----CChhhHHHHHHHHHc
Q 036275          108 -DTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYA----ADISTYNILINIYGR  156 (271)
Q Consensus       108 -~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~----~~~~~~~~li~~~~~  156 (271)
                       |-..=+..+..+...|++.++..+++++.+.=++    -+..+|+-++-.+++
T Consensus       126 ~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~~vlmlsr  179 (549)
T PF07079_consen  126 SDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDRAVLMLSR  179 (549)
T ss_pred             hHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHhH
Confidence             1111244455666677777777776666654222    466666666655554

Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.

>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional

Probab=93.43  E-value=0.98  Score=38.73  Aligned_cols=125  Identities=12%  Similarity=0.084  Sum_probs=85.2

Q ss_pred             HccCCHhHHHH-HHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 036275          120 GRLGQFEKMEE-VLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRC  198 (271)
Q Consensus       120 ~~~g~~~~a~~-~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a  198 (271)
                      ...|+.-.|.+ ++.-+...  +-+++........+...|+++.+...+...... +.....+...+++.....|++++|
T Consensus       300 ~~~gd~~aas~~~~~~lr~~--~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r~~~a  376 (831)
T PRK15180        300 LADGDIIAASQQLFAALRNQ--QQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLARWREA  376 (831)
T ss_pred             hhccCHHHHHHHHHHHHHhC--CCCchhhHHHHHHHHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhhHHHH
Confidence            34455554443 44444433  334444444555678889999999998877643 334667889999999999999999


Q ss_pred             HHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhcccchh
Q 036275          199 LEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKDMKTAL  248 (271)
Q Consensus       199 ~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~  248 (271)
                      ..+-..|+...++ +.+......-.....|-+|++.-.|+++..-+++..
T Consensus       377 ~s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~~  425 (831)
T PRK15180        377 LSTAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPETQ  425 (831)
T ss_pred             HHHHHHHhccccC-ChhheeeecccHHHHhHHHHHHHHHHHHhccCChhc
Confidence            9999999877655 444444434445567889999999999876554443

>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1

Probab=93.42  E-value=1.3  Score=29.32  Aligned_cols=40  Identities=20%  Similarity=0.236  Sum_probs=15.3

Q ss_pred             HHhchhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 036275          167 FQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMI  206 (271)
Q Consensus       167 ~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~  206 (271)
                      +..+....+.|++....+.+++|.+.+++..|.++|+-.+
T Consensus        33 lN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK   72 (108)
T PF02284_consen   33 LNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIK   72 (108)
T ss_dssp             HHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred             HHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence            3333333344444444444444444444444444444333

9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=93.33  E-value=2.7  Score=38.53  Aligned_cols=139  Identities=12%  Similarity=0.146  Sum_probs=82.5

Q ss_pred             HhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHH
Q 036275           85 SKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKME  164 (271)
Q Consensus        85 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~  164 (271)
                      .+.|++++|...|-+-... ++|+     .+|.-|........-..+++.+.+.|+. +...-..|+.+|.+.++.++-.
T Consensus       379 y~Kgdf~~A~~qYI~tI~~-le~s-----~Vi~kfLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~  451 (933)
T KOG2114|consen  379 YGKGDFDEATDQYIETIGF-LEPS-----EVIKKFLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLT  451 (933)
T ss_pred             HhcCCHHHHHHHHHHHccc-CChH-----HHHHHhcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHH
Confidence            3567777777776554432 1222     2455556666666667777777777753 3444467788888888888877


Q ss_pred             HHHHhchhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHH
Q 036275          165 GLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMH  241 (271)
Q Consensus       165 ~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~  241 (271)
                      ++.+... .|...  .-....+..+.+.+-.++|..+-.....     +......++   ...+++++|.+++..+.
T Consensus       452 efI~~~~-~g~~~--fd~e~al~Ilr~snyl~~a~~LA~k~~~-----he~vl~ill---e~~~ny~eAl~yi~slp  517 (933)
T KOG2114|consen  452 EFISKCD-KGEWF--FDVETALEILRKSNYLDEAELLATKFKK-----HEWVLDILL---EDLHNYEEALRYISSLP  517 (933)
T ss_pred             HHHhcCC-Cccee--eeHHHHHHHHHHhChHHHHHHHHHHhcc-----CHHHHHHHH---HHhcCHHHHHHHHhcCC
Confidence            7777666 33221  1234555566666666666655444321     233333333   44577888888887764

>PRK11906 transcriptional regulator; Provisional

Probab=93.33  E-value=4.8  Score=34.60  Aligned_cols=162  Identities=10%  Similarity=0.021  Sum_probs=107.1

Q ss_pred             HHH--HHHHHHHHhc-----CChHHHHHHHHHHHH-CCCCCCH-HHHHHHHHHHHc---------cCCHhHHHHHHHHHH
Q 036275           75 KSH--MLLLTAYSKT-----GNVAKCEGVINQMHK-SGLKPDT-FVINSMLNLYGR---------LGQFEKMEEVLTAME  136 (271)
Q Consensus        75 ~~~--~~li~~~~~~-----~~~~~a~~~~~~m~~-~~~~~~~-~~~~~li~~~~~---------~g~~~~a~~~~~~m~  136 (271)
                      ..|  ...+.+....     ...+.|+.+|.+... +...|+- ..|..+..++..         ..+..+|.++-+...
T Consensus       252 ~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAv  331 (458)
T PRK11906        252 NHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVS  331 (458)
T ss_pred             cchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence            456  5556555442     235678888888872 2335553 334333332221         234556777777777


Q ss_pred             hCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHhchhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCH
Q 036275          137 KGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPD-VVTWTSRLAAYSRKKLYRRCLEIFEEMIDA-GCYPDG  214 (271)
Q Consensus       137 ~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-~~~p~~  214 (271)
                      +.+ +.|......+..+..-.++++.|...|++....  .|| ..+|......+.-.|+.++|.+.+++..+. ..+.-.
T Consensus       332 eld-~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L--~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~  408 (458)
T PRK11906        332 DIT-TVDGKILAIMGLITGLSGQAKVSHILFEQAKIH--STDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKA  408 (458)
T ss_pred             hcC-CCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhc--CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHH
Confidence            775 567888888888888899999999999998876  565 456666666777899999999999996654 222334


Q ss_pred             HHHHHHHHHHhccCcHHHHHHHHHHH
Q 036275          215 GTAKVLISACSSEDQIEQVTTLVRTM  240 (271)
Q Consensus       215 ~~~~~l~~~~~~~g~~~~a~~~~~~~  240 (271)
                      .+....+..|...+ ++.+..++-+-
T Consensus       409 ~~~~~~~~~~~~~~-~~~~~~~~~~~  433 (458)
T PRK11906        409 VVIKECVDMYVPNP-LKNNIKLYYKE  433 (458)
T ss_pred             HHHHHHHHHHcCCc-hhhhHHHHhhc
Confidence            45555566777654 66677666543

>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases

Probab=93.31  E-value=3.1  Score=34.42  Aligned_cols=186  Identities=10%  Similarity=0.044  Sum_probs=94.8

Q ss_pred             hcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCC---C-CCCHHHHHHHHHHHHccCCHhH
Q 036275           52 SIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSG---L-KPDTFVINSMLNLYGRLGQFEK  127 (271)
Q Consensus        52 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~---~-~~~~~~~~~li~~~~~~g~~~~  127 (271)
                      .|+|+...+........  .++...|..+...  ..++.+++....++....-   + ......|........+...+.+
T Consensus        11 l~~Wd~l~~~~~~~~~~--~~~~~~~~al~~l--~~~~~~~~~~~i~~~r~~~~~~l~~~~~~s~~~~y~~l~~lq~L~E   86 (352)
T PF02259_consen   11 LGDWDLLEEYLSQSNED--SPEYSFYRALLAL--RQGDYDEAKKYIEKARQLLLDELSALSSESYQRAYPSLVKLQQLVE   86 (352)
T ss_pred             cCChhhHHHHHhhccCC--ChhHHHHHHHHHH--hCccHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhHHHH
Confidence            78888755544444322  2345555554433  7788888888877665431   1 1122233333333334434444


Q ss_pred             HHHHHHHHHhCCCCCChhhHHHHHHHHH-----cCCCHHHHHHHHH---hchh--CCCCCCHHHHHHHHHHHHhcCCHHH
Q 036275          128 MEEVLTAMEKGSYAADISTYNILINIYG-----RGGFIEKMEGLFQ---SLPA--KRLKPDVVTWTSRLAAYSRKKLYRR  197 (271)
Q Consensus       128 a~~~~~~m~~~~~~~~~~~~~~li~~~~-----~~g~~~~a~~~~~---~m~~--~g~~~~~~~~~~li~~~~~~g~~~~  197 (271)
                      ..++.+-.....  .+......++....     ..++++.-..++.   .+..  ........+|..+.+.+.+.|+++.
T Consensus        87 lee~~~~~~~~~--~~~~~~~~l~~~W~~Rl~~~~~~~~~~~~il~~R~~~l~~~~~~~~~~~~~l~~a~~aRk~g~~~~  164 (352)
T PF02259_consen   87 LEEIIELKSNLS--QNPQDLKSLLKRWRSRLPNMQDDFSVWEPILSLRRLVLSLILLPEELAETWLKFAKLARKAGNFQL  164 (352)
T ss_pred             HHHHHHHHHhhc--ccHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHCCCcHH
Confidence            444433332110  00111122221111     0222222222221   1111  1112344678888888899999999


Q ss_pred             HHHHHHHHHHCCCCC---CHHHHHHHHHHHhccCcHHHHHHHHHHHHhc
Q 036275          198 CLEIFEEMIDAGCYP---DGGTAKVLISACSSEDQIEQVTTLVRTMHKD  243 (271)
Q Consensus       198 a~~~~~~m~~~~~~p---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~  243 (271)
                      |...+..+...+...   +......-.+..-..|+..+|...+++..+.
T Consensus       165 A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~  213 (352)
T PF02259_consen  165 ALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKC  213 (352)
T ss_pred             HHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            999888887643211   2334444456667778888898888887763

Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding

>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=93.25  E-value=0.077  Score=37.86  Aligned_cols=85  Identities=15%  Similarity=0.268  Sum_probs=50.7

Q ss_pred             HHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCC
Q 036275           80 LLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGF  159 (271)
Q Consensus        80 li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~  159 (271)
                      ++..+.+.+.......+++.+...+...+....+.++..|++.++.++..++++..       +..-...++..|.+.|.
T Consensus        13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~-------~~yd~~~~~~~c~~~~l   85 (143)
T PF00637_consen   13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTS-------NNYDLDKALRLCEKHGL   85 (143)
T ss_dssp             CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSS-------SSS-CTHHHHHHHTTTS
T ss_pred             HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccc-------cccCHHHHHHHHHhcch
Confidence            45556666777777777777776655556777777777777777666666666511       11222345555566666


Q ss_pred             HHHHHHHHHhch
Q 036275          160 IEKMEGLFQSLP  171 (271)
Q Consensus       160 ~~~a~~~~~~m~  171 (271)
                      ++++.-++.++.
T Consensus        86 ~~~a~~Ly~~~~   97 (143)
T PF00637_consen   86 YEEAVYLYSKLG   97 (143)
T ss_dssp             HHHHHHHHHCCT
T ss_pred             HHHHHHHHHHcc
Confidence            666666555543

These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=93.17  E-value=1.6  Score=40.00  Aligned_cols=135  Identities=18%  Similarity=0.302  Sum_probs=84.0

Q ss_pred             hcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHhHHHHH
Q 036275           52 SIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEV  131 (271)
Q Consensus        52 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~  131 (271)
                      .|++++|...|-+-... +.|     ..+|.-|....+...-..+++.+.+.|+. +...-+.|+.+|.+.++.++-.++
T Consensus       381 Kgdf~~A~~qYI~tI~~-le~-----s~Vi~kfLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~ef  453 (933)
T KOG2114|consen  381 KGDFDEATDQYIETIGF-LEP-----SEVIKKFLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEF  453 (933)
T ss_pred             cCCHHHHHHHHHHHccc-CCh-----HHHHHHhcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHH
Confidence            88888888877655432 121     13566666777777778888999999876 666668899999999998887777


Q ss_pred             HHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 036275          132 LTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEE  204 (271)
Q Consensus       132 ~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~  204 (271)
                      .+.-.+.....|   ....+..+.+.+-.++|..+-.....     +......++   -..+++++|.+.+..
T Consensus       454 I~~~~~g~~~fd---~e~al~Ilr~snyl~~a~~LA~k~~~-----he~vl~ill---e~~~ny~eAl~yi~s  515 (933)
T KOG2114|consen  454 ISKCDKGEWFFD---VETALEILRKSNYLDEAELLATKFKK-----HEWVLDILL---EDLHNYEEALRYISS  515 (933)
T ss_pred             HhcCCCcceeee---HHHHHHHHHHhChHHHHHHHHHHhcc-----CHHHHHHHH---HHhcCHHHHHHHHhc
Confidence            665542111112   34566666666767776666554433     222222222   234556666555543

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=93.04  E-value=6.5  Score=35.34  Aligned_cols=184  Identities=9%  Similarity=0.051  Sum_probs=95.6

Q ss_pred             chHHHHHH----hcCHHHHHHHHHHHHHcCCCC-CHHHHH-----HHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHH
Q 036275           44 PNLFVFIF----SIYFSDAHAVFEEMKRLGITP-TMKSHM-----LLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVIN  113 (271)
Q Consensus        44 y~~ll~~~----~g~~~~A~~~~~~~~~~~~~~-~~~~~~-----~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~  113 (271)
                      .+.++.+-    .|++.+|-++|.+-   |... -.+.|+     -...-+...|..++-..+.++-.+-  ..+..--.
T Consensus       633 P~~iLlA~~~Ay~gKF~EAAklFk~~---G~enRAlEmyTDlRMFD~aQE~~~~g~~~eKKmL~RKRA~W--Ar~~kePk  707 (1081)
T KOG1538|consen  633 PNDLLLADVFAYQGKFHEAAKLFKRS---GHENRALEMYTDLRMFDYAQEFLGSGDPKEKKMLIRKRADW--ARNIKEPK  707 (1081)
T ss_pred             chHHHHHHHHHhhhhHHHHHHHHHHc---CchhhHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHH--hhhcCCcH
Confidence            55554443    88999988888753   3211 111121     1223333444444333333222111  11111112


Q ss_pred             HHHHHHHccCCHhHHHHHHHH------HHhCCCC---CChhhHHHHHHHHHcCCCHHHHHHHHHhchhCCCCCCHHHHHH
Q 036275          114 SMLNLYGRLGQFEKMEEVLTA------MEKGSYA---ADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTS  184 (271)
Q Consensus       114 ~li~~~~~~g~~~~a~~~~~~------m~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~  184 (271)
                      +....+...|+.++|..+..+      +.+.+.+   .+..+...+..-+.+...+.-|-++|..|-.         ...
T Consensus       708 aAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD---------~ks  778 (1081)
T KOG1538|consen  708 AAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPLLLCATYLKKLDSPGLAAEIFLKMGD---------LKS  778 (1081)
T ss_pred             HHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhHHHHHHHHHhhccccchHHHHHHHhcc---------HHH
Confidence            344556677887777765321      1111111   2344555555556666777778888877642         234


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH-----------HHHHHHHHHhccCcHHHHHHHHHHHHhc
Q 036275          185 RLAAYSRKKLYRRCLEIFEEMIDAGCYPDGG-----------TAKVLISACSSEDQIEQVTTLVRTMHKD  243 (271)
Q Consensus       185 li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~-----------~~~~l~~~~~~~g~~~~a~~~~~~~~~~  243 (271)
                      +++.+...++|.+|..+-+..-+.  .||..           -|...-++|.+.|+-.+|.++++++...
T Consensus       779 iVqlHve~~~W~eAFalAe~hPe~--~~dVy~pyaqwLAE~DrFeEAqkAfhkAGr~~EA~~vLeQLtnn  846 (1081)
T KOG1538|consen  779 LVQLHVETQRWDEAFALAEKHPEF--KDDVYMPYAQWLAENDRFEEAQKAFHKAGRQREAVQVLEQLTNN  846 (1081)
T ss_pred             HhhheeecccchHhHhhhhhCccc--cccccchHHHHhhhhhhHHHHHHHHHHhcchHHHHHHHHHhhhh
Confidence            566677788888888877665432  23321           1333345567777777777777776543

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=93.03  E-value=4  Score=32.85  Aligned_cols=165  Identities=9%  Similarity=0.074  Sum_probs=108.5

Q ss_pred             CCchhhHHHHHHHhhcC-----chHHHHHH-hcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 036275           27 PYPSHFMLINFLLLQHT-----PNLFVFIF-SIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQM  100 (271)
Q Consensus        27 ~~~~~~~~~~f~~~~~~-----y~~ll~~~-~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m  100 (271)
                      ..|....++..++....     +....... .|++.+|...|+...... +-+...--.+..+|...|+.+.|..++..+
T Consensus       116 ~qPesqlr~~ld~~~~~~~e~~~~~~~~~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~l  194 (304)
T COG3118         116 AQPESQLRQFLDKVLPAEEEEALAEAKELIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAAL  194 (304)
T ss_pred             CCcHHHHHHHHHHhcChHHHHHHHHhhhhhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhC
Confidence            33444444555544433     33333444 999999999999998775 445677778999999999999999999988


Q ss_pred             HHCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHhchhCCC-CCCH
Q 036275          101 HKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL-KPDV  179 (271)
Q Consensus       101 ~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~-~~~~  179 (271)
                      ...--.........-|..+.+.....+...+-.+.-..  +-|...--.+...+...|+.++|.+.+-.+..... .-|.
T Consensus       195 P~~~~~~~~~~l~a~i~ll~qaa~~~~~~~l~~~~aad--Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~  272 (304)
T COG3118         195 PLQAQDKAAHGLQAQIELLEQAAATPEIQDLQRRLAAD--PDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDG  272 (304)
T ss_pred             cccchhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCc
Confidence            66532222233333455566666655555555555443  44777777888999999999999888777665421 1234


Q ss_pred             HHHHHHHHHHHhcCC
Q 036275          180 VTWTSRLAAYSRKKL  194 (271)
Q Consensus       180 ~~~~~li~~~~~~g~  194 (271)
                      ..-..++..+.--|.
T Consensus       273 ~~Rk~lle~f~~~g~  287 (304)
T COG3118         273 EARKTLLELFEAFGP  287 (304)
T ss_pred             HHHHHHHHHHHhcCC
Confidence            455566666555553

>PF13929 mRNA_stabil: mRNA stabilisation

Probab=92.96  E-value=4  Score=32.74  Aligned_cols=115  Identities=10%  Similarity=0.042  Sum_probs=79.5

Q ss_pred             HhHHHHHHHHHHh-CCCCCChhhHHHHHHHHHc-CC-CHHHHHHHHHhch-hCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 036275          125 FEKMEEVLTAMEK-GSYAADISTYNILINIYGR-GG-FIEKMEGLFQSLP-AKRLKPDVVTWTSRLAAYSRKKLYRRCLE  200 (271)
Q Consensus       125 ~~~a~~~~~~m~~-~~~~~~~~~~~~li~~~~~-~g-~~~~a~~~~~~m~-~~g~~~~~~~~~~li~~~~~~g~~~~a~~  200 (271)
                      ..+|..+|+...- ..+-.|..+...+++.... .+ ....-.++.+-+. ..|-.++..+...+|..+++.+++.+.++
T Consensus       144 Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~~  223 (292)
T PF13929_consen  144 VVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLFQ  223 (292)
T ss_pred             HHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHHH
Confidence            4456666653221 2244566666677766665 22 2222233333332 23356788899999999999999999999


Q ss_pred             HHHHHHHC-CCCCCHHHHHHHHHHHhccCcHHHHHHHHHH
Q 036275          201 IFEEMIDA-GCYPDGGTAKVLISACSSEDQIEQVTTLVRT  239 (271)
Q Consensus       201 ~~~~m~~~-~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~  239 (271)
                      +++..... +..-|...|..+|+.-...||..-...++.+
T Consensus       224 fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~  263 (292)
T PF13929_consen  224 FWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDD  263 (292)
T ss_pred             HHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhC
Confidence            99987764 5566889999999999999999888888775

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=92.96  E-value=0.33  Score=25.30  Aligned_cols=23  Identities=17%  Similarity=0.374  Sum_probs=10.9

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHH
Q 036275          182 WTSRLAAYSRKKLYRRCLEIFEE  204 (271)
Q Consensus       182 ~~~li~~~~~~g~~~~a~~~~~~  204 (271)
                      |..|...|.+.|++++|..++++
T Consensus         2 l~~Lg~~~~~~g~~~~Ai~~y~~   24 (36)
T PF13176_consen    2 LNNLGRIYRQQGDYEKAIEYYEQ   24 (36)
T ss_dssp             HHHHHHHHHHCT-HHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHH
Confidence            34444455555555555555544

>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va

Probab=92.92  E-value=1.1  Score=29.35  Aligned_cols=45  Identities=11%  Similarity=0.169  Sum_probs=26.4

Q ss_pred             HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 036275           57 DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMH  101 (271)
Q Consensus        57 ~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~  101 (271)
                      ++.+-++.+...+..|++....+.+++|-+.+++..|.++++-.+
T Consensus        25 e~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK   69 (103)
T cd00923          25 ELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIK   69 (103)
T ss_pred             HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence            444455555555556666666666666666666666666665555

Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=92.89  E-value=0.22  Score=25.68  Aligned_cols=31  Identities=13%  Similarity=0.148  Sum_probs=19.6

Q ss_pred             HHHHHcCCCCCHHHHHHHHHHHHhcCChHHHH
Q 036275           63 EEMKRLGITPTMKSHMLLLTAYSKTGNVAKCE   94 (271)
Q Consensus        63 ~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~   94 (271)
                      ++..+.+ |-++.+|+.+...|...|++++|+
T Consensus         3 ~kAie~~-P~n~~a~~nla~~~~~~g~~~~A~   33 (34)
T PF13431_consen    3 KKAIELN-PNNAEAYNNLANLYLNQGDYEEAI   33 (34)
T ss_pred             HHHHHHC-CCCHHHHHHHHHHHHHCcCHHhhc
Confidence            3444444 556777777777777777777664

>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1

Probab=92.74  E-value=2  Score=28.57  Aligned_cols=65  Identities=8%  Similarity=0.175  Sum_probs=46.1

Q ss_pred             HHHHHHHHHHHhcCCH--HHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhcc
Q 036275          180 VTWTSRLAAYSRKKLY--RRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKDM  244 (271)
Q Consensus       180 ~~~~~li~~~~~~g~~--~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~  244 (271)
                      .-|+.--..|....+.  -+..+-+..+....+.|+..+..+.+++|.+.+|+..|.++++-+..+.
T Consensus         9 eeF~ary~~~F~~~~iD~we~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~   75 (108)
T PF02284_consen    9 EEFDARYEKYFNRPDIDGWELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKC   75 (108)
T ss_dssp             HHHHHHHHHHHH-TT--HHHHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHhCCccccHHHHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHc
Confidence            3444444455444443  3677778888888999999999999999999999999999999987543

9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]

Probab=92.73  E-value=3.6  Score=31.63  Aligned_cols=187  Identities=12%  Similarity=0.018  Sum_probs=98.9

Q ss_pred             hcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHhHHHHH
Q 036275           52 SIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEV  131 (271)
Q Consensus        52 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~  131 (271)
                      .|-+..|.-=|.+..... |.-+.+||.+.--+...|+++.|.+.|+...+....-+-...|--|.. .-.|++..|.+=
T Consensus        78 lGL~~LAR~DftQaLai~-P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~-YY~gR~~LAq~d  155 (297)
T COG4785          78 LGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIAL-YYGGRYKLAQDD  155 (297)
T ss_pred             hhHHHHHhhhhhhhhhcC-CCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceee-eecCchHhhHHH
Confidence            344444444444444433 334677888888888888888888888888876543333333333333 346777777776


Q ss_pred             HHHHHhCCCCCChhhHHHHHHHHH-cCCCHHHHHH-HHHhchhCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHC
Q 036275          132 LTAMEKGSYAADISTYNILINIYG-RGGFIEKMEG-LFQSLPAKRLKPDVVTWTSRLAAYSRKK-LYRRCLEIFEEMIDA  208 (271)
Q Consensus       132 ~~~m~~~~~~~~~~~~~~li~~~~-~~g~~~~a~~-~~~~m~~~g~~~~~~~~~~li~~~~~~g-~~~~a~~~~~~m~~~  208 (271)
                      +...-+.. +.|+  |.+|---.. ..-+..+|.. +.++....    |..-|...|-.+.--. ..+.+.+-.....+.
T Consensus       156 ~~~fYQ~D-~~DP--fR~LWLYl~E~k~dP~~A~tnL~qR~~~~----d~e~WG~~iV~~yLgkiS~e~l~~~~~a~a~~  228 (297)
T COG4785         156 LLAFYQDD-PNDP--FRSLWLYLNEQKLDPKQAKTNLKQRAEKS----DKEQWGWNIVEFYLGKISEETLMERLKADATD  228 (297)
T ss_pred             HHHHHhcC-CCCh--HHHHHHHHHHhhCCHHHHHHHHHHHHHhc----cHhhhhHHHHHHHHhhccHHHHHHHHHhhccc
Confidence            66555542 1122  222211111 2234445543 33333332    5555655554433221 122222222111111


Q ss_pred             CC---CCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhcccch
Q 036275          209 GC---YPDGGTAKVLISACSSEDQIEQVTTLVRTMHKDMKTA  247 (271)
Q Consensus       209 ~~---~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~  247 (271)
                      +-   ..-..||-.+.+-+...|+.++|..+|+-....++..
T Consensus       229 n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaiannVyn  270 (297)
T COG4785         229 NTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVANNVYN  270 (297)
T ss_pred             hHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhHHH
Confidence            00   1123577788888888888888888888777665544

>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK

Probab=92.61  E-value=2.8  Score=30.04  Aligned_cols=51  Identities=18%  Similarity=0.186  Sum_probs=28.5

Q ss_pred             hcCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 036275           52 SIYFSDAHAVFEEMKRLG-ITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSG  104 (271)
Q Consensus        52 ~g~~~~A~~~~~~~~~~~-~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~  104 (271)
                      .++++++..+++.|.-.. -.+...++...+  +...|+|++|..+|+++.+.+
T Consensus        23 ~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l--~i~rg~w~eA~rvlr~l~~~~   74 (153)
T TIGR02561        23 SADPYDAQAMLDALRVLRPNLKELDMFDGWL--LIARGNYDEAARILRELLSSA   74 (153)
T ss_pred             cCCHHHHHHHHHHHHHhCCCccccchhHHHH--HHHcCCHHHHHHHHHhhhccC
Confidence            666666666666665432 012233333333  556667777777777666653

This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.

>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]

Probab=92.36  E-value=7.1  Score=34.08  Aligned_cols=173  Identities=12%  Similarity=0.107  Sum_probs=121.6

Q ss_pred             chHHHHHH--hcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 036275           44 PNLFVFIF--SIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGR  121 (271)
Q Consensus        44 y~~ll~~~--~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~  121 (271)
                      .-+++..+  +.++.-++.+..+|...|  -+-..|-.++.+|... .-+.-..+|+++.+..+. |.+.-..|...|-+
T Consensus        69 l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReLa~~yEk  144 (711)
T COG1747          69 LVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGRELADKYEK  144 (711)
T ss_pred             HHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHHHHHHHH
Confidence            34455555  666777788888888875  4778888999999998 567788999999998765 56655666666655


Q ss_pred             cCCHhHHHHHHHHHHhCCCCC-----ChhhHHHHHHHHHcCCCHHHHHHHHHhchh-CCCCCCHHHHHHHHHHHHhcCCH
Q 036275          122 LGQFEKMEEVLTAMEKGSYAA-----DISTYNILINIYGRGGFIEKMEGLFQSLPA-KRLKPDVVTWTSRLAAYSRKKLY  195 (271)
Q Consensus       122 ~g~~~~a~~~~~~m~~~~~~~-----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-~g~~~~~~~~~~li~~~~~~g~~  195 (271)
                       ++.+.+..+|.....+=++.     =...|.-|+..-  ..+.+....+...+.. .|...-.+.+..+-.-|....++
T Consensus       145 -ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~~eN~  221 (711)
T COG1747         145 -IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSENENW  221 (711)
T ss_pred             -hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhccccCH
Confidence             88889999998887653321     123455554321  3566777777776654 34445567788888899999999


Q ss_pred             HHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 036275          196 RRCLEIFEEMIDAGCYPDGGTAKVLISAC  224 (271)
Q Consensus       196 ~~a~~~~~~m~~~~~~p~~~~~~~l~~~~  224 (271)
                      ++|.+++...++.. .-|.-.-..++.-+
T Consensus       222 ~eai~Ilk~il~~d-~k~~~ar~~~i~~l  249 (711)
T COG1747         222 TEAIRILKHILEHD-EKDVWARKEIIENL  249 (711)
T ss_pred             HHHHHHHHHHhhhc-chhhhHHHHHHHHH
Confidence            99999999888764 33554545555543

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=91.76  E-value=0.23  Score=25.64  Aligned_cols=22  Identities=32%  Similarity=0.400  Sum_probs=11.5

Q ss_pred             ChhhHHHHHHHHHcCCCHHHHH
Q 036275          143 DISTYNILINIYGRGGFIEKME  164 (271)
Q Consensus       143 ~~~~~~~li~~~~~~g~~~~a~  164 (271)
                      +...|+.+...|...|++++|+
T Consensus        12 n~~a~~nla~~~~~~g~~~~A~   33 (34)
T PF13431_consen   12 NAEAYNNLANLYLNQGDYEEAI   33 (34)
T ss_pred             CHHHHHHHHHHHHHCcCHHhhc
Confidence            4455555555555555555543

>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]

Probab=91.41  E-value=2  Score=29.79  Aligned_cols=46  Identities=9%  Similarity=0.252  Sum_probs=24.1

Q ss_pred             HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHh
Q 036275          197 RCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHK  242 (271)
Q Consensus       197 ~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~  242 (271)
                      +..+.+..+....+.|+......-+++|.+-+|+..|.++|+-+..
T Consensus        67 EvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~  112 (149)
T KOG4077|consen   67 EVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKD  112 (149)
T ss_pred             HHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence            3344444444555555555555555555555555555555555543

>PF13762 MNE1: Mitochondrial splicing apparatus component

Probab=91.35  E-value=4  Score=29.17  Aligned_cols=92  Identities=17%  Similarity=0.175  Sum_probs=47.2

Q ss_pred             HHHCCCCCCHH--HHHHHHHHHHccCCHhHHHHHHHHHHhCC-----CCCChhhHHHHHHHHHcCCC-HHHHHHHHHhch
Q 036275          100 MHKSGLKPDTF--VINSMLNLYGRLGQFEKMEEVLTAMEKGS-----YAADISTYNILINIYGRGGF-IEKMEGLFQSLP  171 (271)
Q Consensus       100 m~~~~~~~~~~--~~~~li~~~~~~g~~~~a~~~~~~m~~~~-----~~~~~~~~~~li~~~~~~g~-~~~a~~~~~~m~  171 (271)
                      |.+.+..++..  ..++++.-....+++.....+++.+..-.     -..+...|.+++.+.++..- .--+..+|.-++
T Consensus        28 ~~~~~~~~~~k~~fiN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk  107 (145)
T PF13762_consen   28 MQEENASQSTKTIFINCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLK  107 (145)
T ss_pred             hhhcccChhHHHHHHHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHH
Confidence            34444444443  35666666667777777777776663210     01234445555555544443 233444555555


Q ss_pred             hCCCCCCHHHHHHHHHHHHh
Q 036275          172 AKRLKPDVVTWTSRLAAYSR  191 (271)
Q Consensus       172 ~~g~~~~~~~~~~li~~~~~  191 (271)
                      +.+.++++.-|..+|.++.+
T Consensus       108 ~~~~~~t~~dy~~li~~~l~  127 (145)
T PF13762_consen  108 KNDIEFTPSDYSCLIKAALR  127 (145)
T ss_pred             HcCCCCCHHHHHHHHHHHHc
Confidence            44455555555555555444

>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=91.15  E-value=6.2  Score=30.98  Aligned_cols=191  Identities=10%  Similarity=0.069  Sum_probs=107.7

Q ss_pred             chHHHHHH--hcCHHHHHHHHHHHHHcCCCCCH------HHHHHHHHHHHhcCChHHHHHHHHHHH----HCCCCCCHHH
Q 036275           44 PNLFVFIF--SIYFSDAHAVFEEMKRLGITPTM------KSHMLLLTAYSKTGNVAKCEGVINQMH----KSGLKPDTFV  111 (271)
Q Consensus        44 y~~ll~~~--~g~~~~A~~~~~~~~~~~~~~~~------~~~~~li~~~~~~~~~~~a~~~~~~m~----~~~~~~~~~~  111 (271)
                      |.....+|  ..+++.|...+.+..+- ...+.      ..|...+...-+...+.++..++++..    +.| .|++..
T Consensus        34 yekAAvafRnAk~feKakdcLlkA~~~-yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~G-spdtAA  111 (308)
T KOG1585|consen   34 YEKAAVAFRNAKKFEKAKDCLLKASKG-YENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVECG-SPDTAA  111 (308)
T ss_pred             HHHHHHHHHhhccHHHHHHHHHHHHHH-HHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhC-CcchHH
Confidence            55555666  88899988888777532 12222      223333333334455667777776553    233 445433


Q ss_pred             HHHHHHH--HHccCCHhHHHHHHHHHHhC---C--CCCChhhHHHHHHHHHcCCCHHHHHHHHHhchh----CCCCCCH-
Q 036275          112 INSMLNL--YGRLGQFEKMEEVLTAMEKG---S--YAADISTYNILINIYGRGGFIEKMEGLFQSLPA----KRLKPDV-  179 (271)
Q Consensus       112 ~~~li~~--~~~~g~~~~a~~~~~~m~~~---~--~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~----~g~~~~~-  179 (271)
                      . +|-++  ....-++++|++++++....   +  ...-...+...-+.+.+...+++|-..|.+-..    ..--++. 
T Consensus       112 m-aleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~  190 (308)
T KOG1585|consen  112 M-ALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQC  190 (308)
T ss_pred             H-HHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHH
Confidence            2 11111  23455677788777765432   1  011223445556667777777776655554221    1111222 


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-C--CCCHHHHHHHHHHHhccCcHHHHHHHHH
Q 036275          180 VTWTSRLAAYSRKKLYRRCLEIFEEMIDAG-C--YPDGGTAKVLISACSSEDQIEQVTTLVR  238 (271)
Q Consensus       180 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~-~--~p~~~~~~~l~~~~~~~g~~~~a~~~~~  238 (271)
                      ..|-..|-.+....++..|.++++.--+-+ +  .-+..+...|+.+|- .||.+++..++.
T Consensus       191 k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ayd-~gD~E~~~kvl~  251 (308)
T KOG1585|consen  191 KAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAYD-EGDIEEIKKVLS  251 (308)
T ss_pred             HHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHhc-cCCHHHHHHHHc
Confidence            235556666777889999999998855421 1  235577888888875 488888777654

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=90.93  E-value=9.5  Score=33.99  Aligned_cols=148  Identities=11%  Similarity=0.035  Sum_probs=75.8

Q ss_pred             hcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHhHHHHH
Q 036275           52 SIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEV  131 (271)
Q Consensus        52 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~  131 (271)
                      .|+++.|..++-.+.       ...-+.+...+.+.|-.++|+++         .+|....   .....+.|+++.|.++
T Consensus       599 rrd~~~a~~vLp~I~-------k~~rt~va~Fle~~g~~e~AL~~---------s~D~d~r---Felal~lgrl~iA~~l  659 (794)
T KOG0276|consen  599 RRDLEVADGVLPTIP-------KEIRTKVAHFLESQGMKEQALEL---------STDPDQR---FELALKLGRLDIAFDL  659 (794)
T ss_pred             hccccccccccccCc-------hhhhhhHHhHhhhccchHhhhhc---------CCChhhh---hhhhhhcCcHHHHHHH
Confidence            566666655444332       12334455555566655555443         2233221   2333466677766665


Q ss_pred             HHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 036275          132 LTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCY  211 (271)
Q Consensus       132 ~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~  211 (271)
                      ..+.      .+..-|..|.++..+.|++..|.+.|.+...         |..|+-.+...|+.+....+-....+.| .
T Consensus       660 a~e~------~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~~~~~g-~  723 (794)
T KOG0276|consen  660 AVEA------NSEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASLAKKQG-K  723 (794)
T ss_pred             HHhh------cchHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHHHHhhc-c
Confidence            4333      2455667777777777777777777765542         4445555555555554444444444444 2


Q ss_pred             CCHHHHHHHHHHHhccCcHHHHHHHHHH
Q 036275          212 PDGGTAKVLISACSSEDQIEQVTTLVRT  239 (271)
Q Consensus       212 p~~~~~~~l~~~~~~~g~~~~a~~~~~~  239 (271)
                      .|     ...-++...|+++++.+++.+
T Consensus       724 ~N-----~AF~~~~l~g~~~~C~~lLi~  746 (794)
T KOG0276|consen  724 NN-----LAFLAYFLSGDYEECLELLIS  746 (794)
T ss_pred             cc-----hHHHHHHHcCCHHHHHHHHHh
Confidence            12     122233444566655555443

>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=90.91  E-value=11  Score=33.65  Aligned_cols=180  Identities=11%  Similarity=0.073  Sum_probs=105.3

Q ss_pred             HHHHHHHHHHHHHcCCCCCHHHHHHHHHH---HHhcCChHHHHHHHHHHHH-------CCCCCCHHHHHHHHHHHHccC-
Q 036275           55 FSDAHAVFEEMKRLGITPTMKSHMLLLTA---YSKTGNVAKCEGVINQMHK-------SGLKPDTFVINSMLNLYGRLG-  123 (271)
Q Consensus        55 ~~~A~~~~~~~~~~~~~~~~~~~~~li~~---~~~~~~~~~a~~~~~~m~~-------~~~~~~~~~~~~li~~~~~~g-  123 (271)
                      ...|.+.++...+.|. ......-.++-.   +....+.+.|+.+|+...+       .|   ......-+..+|.+.. 
T Consensus       228 ~~~a~~~~~~~a~~g~-~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~~  303 (552)
T KOG1550|consen  228 LSEAFKYYREAAKLGH-SEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGLG  303 (552)
T ss_pred             hhHHHHHHHHHHhhcc-hHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCCC
Confidence            5678888888888772 122222222222   3355789999999988876       44   2234555666666643 


Q ss_pred             ----CHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHc-CCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHH----hcCC
Q 036275          124 ----QFEKMEEVLTAMEKGSYAADISTYNILINIYGR-GGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYS----RKKL  194 (271)
Q Consensus       124 ----~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~-~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~----~~g~  194 (271)
                          +.+.|..++...-+.|. |+....-..+..... ..+...|.++|......|.   ...+-.+...|.    ...+
T Consensus       304 ~~~~d~~~A~~~~~~aA~~g~-~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~---~~A~~~la~~y~~G~gv~r~  379 (552)
T KOG1550|consen  304 VEKIDYEKALKLYTKAAELGN-PDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGH---ILAIYRLALCYELGLGVERN  379 (552)
T ss_pred             CccccHHHHHHHHHHHHhcCC-chHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCC---hHHHHHHHHHHHhCCCcCCC
Confidence                56778999988888773 444433333222222 2467889999999888874   223333333322    3457


Q ss_pred             HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhcc
Q 036275          195 YRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKDM  244 (271)
Q Consensus       195 ~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~  244 (271)
                      .+.|...+++..+.| .|...--...+..+.. +..+.+.-.+..+.+-+
T Consensus       380 ~~~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g  427 (552)
T KOG1550|consen  380 LELAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAELG  427 (552)
T ss_pred             HHHHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhh
Confidence            788888888888887 3332222222333333 66666655555554443

>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat

Probab=90.87  E-value=2.7  Score=27.00  Aligned_cols=66  Identities=6%  Similarity=0.119  Sum_probs=50.7

Q ss_pred             HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhcccchhHHHHHHHhhccccccc
Q 036275          197 RCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKDMKTALPIYFNLYGEKGVARSN  264 (271)
Q Consensus       197 ~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~a  264 (271)
                      .+.++++.+.+.|+ .+......+-.+-...|+.+.|.+++..+. .++.-++.+++++.+.|..+=|
T Consensus        20 ~~~~v~d~ll~~~i-lT~~d~e~I~aa~~~~g~~~~ar~LL~~L~-rg~~aF~~Fl~aLreT~~~~LA   85 (88)
T cd08819          20 KTRDVCDKCLEQGL-LTEEDRNRIEAATENHGNESGARELLKRIV-QKEGWFSKFLQALRETEHHELA   85 (88)
T ss_pred             hHHHHHHHHHhcCC-CCHHHHHHHHHhccccCcHHHHHHHHHHhc-cCCcHHHHHHHHHHHcCchhhh
Confidence            45678888888884 455565655554456789999999999999 8888899999999888875544

Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=90.54  E-value=0.87  Score=24.14  Aligned_cols=25  Identities=16%  Similarity=0.232  Sum_probs=12.0

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHH
Q 036275           76 SHMLLLTAYSKTGNVAKCEGVINQM  100 (271)
Q Consensus        76 ~~~~li~~~~~~~~~~~a~~~~~~m  100 (271)
                      +++.+...|...|++++|..++++.
T Consensus         4 ~~~~la~~~~~~g~~~~A~~~~~~a   28 (42)
T PF13374_consen    4 ALNNLANAYRAQGRYEEALELLEEA   28 (42)
T ss_dssp             HHHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhhhcchhhHHHHHH
Confidence            4444555555555555555555444

>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va

Probab=90.53  E-value=3.5  Score=27.11  Aligned_cols=43  Identities=19%  Similarity=0.230  Sum_probs=19.0

Q ss_pred             HHHHHHhchhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 036275          163 MEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEM  205 (271)
Q Consensus       163 a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m  205 (271)
                      +.+-+..+....+.|++....+.+++|.+.+|+..|.++|+-.
T Consensus        26 ~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~v   68 (103)
T cd00923          26 LRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAI   68 (103)
T ss_pred             HHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence            3333333333344444444444444444444444444444433

Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.

>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=90.47  E-value=0.099  Score=37.30  Aligned_cols=84  Identities=15%  Similarity=0.260  Sum_probs=58.0

Q ss_pred             HHHHHHccCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCC
Q 036275          115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKL  194 (271)
Q Consensus       115 li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~  194 (271)
                      ++..+.+.+.++....+++.+...+...+....+.++..|++.++.++..++++....       .-...+++.|.+.|.
T Consensus        13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~-------yd~~~~~~~c~~~~l   85 (143)
T PF00637_consen   13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN-------YDLDKALRLCEKHGL   85 (143)
T ss_dssp             CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS-------S-CTHHHHHHHTTTS
T ss_pred             HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc-------cCHHHHHHHHHhcch
Confidence            5667777888888888999888766556788889999999999888888888883322       122445555566666


Q ss_pred             HHHHHHHHHHH
Q 036275          195 YRRCLEIFEEM  205 (271)
Q Consensus       195 ~~~a~~~~~~m  205 (271)
                      +++|..++.++
T Consensus        86 ~~~a~~Ly~~~   96 (143)
T PF00637_consen   86 YEEAVYLYSKL   96 (143)
T ss_dssp             HHHHHHHHHCC
T ss_pred             HHHHHHHHHHc
Confidence            66666655543

These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.

>PF13934 ELYS: Nuclear pore complex assembly

Probab=90.37  E-value=4.6  Score=31.42  Aligned_cols=110  Identities=13%  Similarity=0.149  Sum_probs=69.5

Q ss_pred             HcCCCCCHHHHHHHHHHHHhc--CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCCh
Q 036275           67 RLGITPTMKSHMLLLTAYSKT--GNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADI  144 (271)
Q Consensus        67 ~~~~~~~~~~~~~li~~~~~~--~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~  144 (271)
                      ..+++   ..|...+.++...  +++++|.+.+-.   -.+.|+  .-.-++.++...|+.+.|..++..+.-..  .+.
T Consensus        72 ~f~ip---~~~~~~~~g~W~LD~~~~~~A~~~L~~---ps~~~~--~~~~Il~~L~~~~~~~lAL~y~~~~~p~l--~s~  141 (226)
T PF13934_consen   72 AFGIP---PKYIKFIQGFWLLDHGDFEEALELLSH---PSLIPW--FPDKILQALLRRGDPKLALRYLRAVGPPL--SSP  141 (226)
T ss_pred             HhCCC---HHHHHHHHHHHHhChHhHHHHHHHhCC---CCCCcc--cHHHHHHHHHHCCChhHHHHHHHhcCCCC--CCH
Confidence            34555   3466677777654  667777776622   222222  22357888888899999999987764432  233


Q ss_pred             hhHHHHHHHHHcCCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHH
Q 036275          145 STYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYS  190 (271)
Q Consensus       145 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~  190 (271)
                      .....++.. ..++.+.+|..+-+......   ....+..++..+.
T Consensus       142 ~~~~~~~~~-La~~~v~EAf~~~R~~~~~~---~~~l~e~l~~~~~  183 (226)
T PF13934_consen  142 EALTLYFVA-LANGLVTEAFSFQRSYPDEL---RRRLFEQLLEHCL  183 (226)
T ss_pred             HHHHHHHHH-HHcCCHHHHHHHHHhCchhh---hHHHHHHHHHHHH
Confidence            334444444 66789999999888877631   2556777777766

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=90.17  E-value=0.96  Score=22.87  Aligned_cols=27  Identities=15%  Similarity=0.103  Sum_probs=12.1

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHH
Q 036275           76 SHMLLLTAYSKTGNVAKCEGVINQMHK  102 (271)
Q Consensus        76 ~~~~li~~~~~~~~~~~a~~~~~~m~~  102 (271)
                      +|..+..++...|++++|+..|++..+
T Consensus         3 ~~~~~g~~~~~~~~~~~A~~~~~~al~   29 (34)
T PF00515_consen    3 AYYNLGNAYFQLGDYEEALEYYQRALE   29 (34)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence            344444444444444444444444443

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=89.93  E-value=14  Score=33.11  Aligned_cols=169  Identities=17%  Similarity=0.113  Sum_probs=105.2

Q ss_pred             hHHHHHHHHHHHHCCCCCCHHHHHHHHH--H-HHccCCHhHHHHHHHHHHh-------CCCCCChhhHHHHHHHHHcCC-
Q 036275           90 VAKCEGVINQMHKSGLKPDTFVINSMLN--L-YGRLGQFEKMEEVLTAMEK-------GSYAADISTYNILINIYGRGG-  158 (271)
Q Consensus        90 ~~~a~~~~~~m~~~~~~~~~~~~~~li~--~-~~~~g~~~~a~~~~~~m~~-------~~~~~~~~~~~~li~~~~~~g-  158 (271)
                      ...+..+++...+.|.. .....-.++.  + +....|.+.|+.+|+.+.+       .|   .+.....+..+|.+.. 
T Consensus       228 ~~~a~~~~~~~a~~g~~-~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~~  303 (552)
T KOG1550|consen  228 LSEAFKYYREAAKLGHS-EAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGLG  303 (552)
T ss_pred             hhHHHHHHHHHHhhcch-HHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCCC
Confidence            46788999888887633 2222222222  2 4466799999999998877       55   3345667777777743 


Q ss_pred             ----CHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH--HhccCcHH
Q 036275          159 ----FIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSR-KKLYRRCLEIFEEMIDAGCYPDGGTAKVLISA--CSSEDQIE  231 (271)
Q Consensus       159 ----~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~-~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~--~~~~g~~~  231 (271)
                          +.+.|..++......|. |+....-..+.-... ..+...|.+.|...-..|.. ...-+..+.-.  .....+..
T Consensus       304 ~~~~d~~~A~~~~~~aA~~g~-~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~-~A~~~la~~y~~G~gv~r~~~  381 (552)
T KOG1550|consen  304 VEKIDYEKALKLYTKAAELGN-PDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHI-LAIYRLALCYELGLGVERNLE  381 (552)
T ss_pred             CccccHHHHHHHHHHHHhcCC-chHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCCh-HHHHHHHHHHHhCCCcCCCHH
Confidence                67789999999988873 444333322222222 35678999999999988843 33222222222  22456888


Q ss_pred             HHHHHHHHHHhcccchhHHHH---HHHhhccccccch
Q 036275          232 QVTTLVRTMHKDMKTALPIYF---NLYGEKGVARSNL  265 (271)
Q Consensus       232 ~a~~~~~~~~~~~~~~~~~~~---~~~~~~G~~~~a~  265 (271)
                      .|..++++..+.+.+.....+   ..+.. |..+.++
T Consensus       382 ~A~~~~k~aA~~g~~~A~~~~~~~~~~g~-~~~~~~~  417 (552)
T KOG1550|consen  382 LAFAYYKKAAEKGNPSAAYLLGAFYEYGV-GRYDTAL  417 (552)
T ss_pred             HHHHHHHHHHHccChhhHHHHHHHHHHcc-ccccHHH
Confidence            999999999888854433333   33333 4444443

>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length

Probab=89.76  E-value=12  Score=32.15  Aligned_cols=71  Identities=11%  Similarity=0.131  Sum_probs=48.2

Q ss_pred             hcCHHHHHHHHHHHHHc--CCCCC------------HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCC----CCCHHHHH
Q 036275           52 SIYFSDAHAVFEEMKRL--GITPT------------MKSHMLLLTAYSKTGNVAKCEGVINQMHKSGL----KPDTFVIN  113 (271)
Q Consensus        52 ~g~~~~A~~~~~~~~~~--~~~~~------------~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~----~~~~~~~~  113 (271)
                      .++++.|++.+.....+  +..+.            -..=+..+.++...|++.++..+++++...=+    ..+..+|+
T Consensus        92 ~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd  171 (549)
T PF07079_consen   92 QKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYD  171 (549)
T ss_pred             hhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHH
Confidence            88888888888877655  32221            11123566777788999998888888776533    37788888


Q ss_pred             HHHHHHHcc
Q 036275          114 SMLNLYGRL  122 (271)
Q Consensus       114 ~li~~~~~~  122 (271)
                      .++-.+.+.
T Consensus       172 ~~vlmlsrS  180 (549)
T PF07079_consen  172 RAVLMLSRS  180 (549)
T ss_pred             HHHHHHhHH
Confidence            877666543

Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=89.72  E-value=1.1  Score=23.78  Aligned_cols=25  Identities=28%  Similarity=0.307  Sum_probs=11.6

Q ss_pred             hHHHHHHHHHcCCCHHHHHHHHHhc
Q 036275          146 TYNILINIYGRGGFIEKMEGLFQSL  170 (271)
Q Consensus       146 ~~~~li~~~~~~g~~~~a~~~~~~m  170 (271)
                      +++.|...|...|++++|..++++.
T Consensus         4 ~~~~la~~~~~~g~~~~A~~~~~~a   28 (42)
T PF13374_consen    4 ALNNLANAYRAQGRYEEALELLEEA   28 (42)
T ss_dssp             HHHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhhhcchhhHHHHHH
Confidence            3444444455555555555544443

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=89.42  E-value=1.2  Score=22.38  Aligned_cols=26  Identities=19%  Similarity=0.201  Sum_probs=11.8

Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHHH
Q 036275           77 HMLLLTAYSKTGNVAKCEGVINQMHK  102 (271)
Q Consensus        77 ~~~li~~~~~~~~~~~a~~~~~~m~~  102 (271)
                      |..+...+.+.|++++|++.|++..+
T Consensus         4 ~~~lg~~~~~~~~~~~A~~~~~~al~   29 (34)
T PF07719_consen    4 WYYLGQAYYQLGNYEEAIEYFEKALE   29 (34)
T ss_dssp             HHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence            34444444455555555555544443

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=88.73  E-value=1.6  Score=21.97  Aligned_cols=25  Identities=20%  Similarity=0.311  Sum_probs=10.4

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHH
Q 036275          182 WTSRLAAYSRKKLYRRCLEIFEEMI  206 (271)
Q Consensus       182 ~~~li~~~~~~g~~~~a~~~~~~m~  206 (271)
                      |..+..+|...|++++|...|++.+
T Consensus         4 ~~~~g~~~~~~~~~~~A~~~~~~al   28 (34)
T PF00515_consen    4 YYNLGNAYFQLGDYEEALEYYQRAL   28 (34)
T ss_dssp             HHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCchHHHHHHHHHH
Confidence            3344444444444444444444433

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional

Probab=88.14  E-value=17  Score=31.65  Aligned_cols=123  Identities=10%  Similarity=0.087  Sum_probs=79.2

Q ss_pred             HHHHH-hcCHHHHHH-HHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCC
Q 036275           47 FVFIF-SIYFSDAHA-VFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQ  124 (271)
Q Consensus        47 ll~~~-~g~~~~A~~-~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~  124 (271)
                      +-..+ .|++..|-+ +++.++...-.|+.....+.|  +...|+++.+.+.+...... +..+..+..++++...+.|+
T Consensus       296 i~k~~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i--~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r  372 (831)
T PRK15180        296 ITKQLADGDIIAASQQLFAALRNQQQDPVLIQLRSVI--FSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLAR  372 (831)
T ss_pred             HHHHhhccCHHHHHHHHHHHHHhCCCCchhhHHHHHH--HHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhh
Confidence            34455 777777654 445454443345544444433  56778899888887655443 23355677888999999999


Q ss_pred             HhHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHhchhC
Q 036275          125 FEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAK  173 (271)
Q Consensus       125 ~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~  173 (271)
                      +++|..+-+.|....++ +...........-..|-++++.-.|+++...
T Consensus       373 ~~~a~s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~  420 (831)
T PRK15180        373 WREALSTAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLLL  420 (831)
T ss_pred             HHHHHHHHHHHhccccC-ChhheeeecccHHHHhHHHHHHHHHHHHhcc
Confidence            99999998888877553 3333333333344557788888888887654

>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=87.68  E-value=10  Score=28.65  Aligned_cols=133  Identities=8%  Similarity=-0.007  Sum_probs=77.7

Q ss_pred             CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHH--HHHHHHccCCHhHHHHHHHHHHhCCCCCC--hhhHH
Q 036275           73 TMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINS--MLNLYGRLGQFEKMEEVLTAMEKGSYAAD--ISTYN  148 (271)
Q Consensus        73 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~--li~~~~~~g~~~~a~~~~~~m~~~~~~~~--~~~~~  148 (271)
                      -+..|..++..... +.. +.....+++........-.++.+  +...+...|++++|+.-++.........+  ..+--
T Consensus        53 AS~~Y~~~i~~~~a-k~~-~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~l  130 (207)
T COG2976          53 ASAQYQNAIKAVQA-KKP-KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAAL  130 (207)
T ss_pred             HHHHHHHHHHHHhc-CCc-hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHH
Confidence            44556666665542 222 55555566665532212222332  34556778888888888877665421111  11222


Q ss_pred             HHHHHHHcCCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 036275          149 ILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAG  209 (271)
Q Consensus       149 ~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~  209 (271)
                      -|.+.....|.+++|+.+++.....+.  .......-...+...|+-++|..-|...++.+
T Consensus       131 RLArvq~q~~k~D~AL~~L~t~~~~~w--~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~  189 (207)
T COG2976         131 RLARVQLQQKKADAALKTLDTIKEESW--AAIVAELRGDILLAKGDKQEARAAYEKALESD  189 (207)
T ss_pred             HHHHHHHHhhhHHHHHHHHhccccccH--HHHHHHHhhhHHHHcCchHHHHHHHHHHHHcc
Confidence            345567778888888888887776532  12223334467788888888888888877764

>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]

Probab=87.35  E-value=5.9  Score=30.55  Aligned_cols=55  Identities=15%  Similarity=0.123  Sum_probs=26.5

Q ss_pred             HHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHhHHHHHHH
Q 036275           78 MLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLT  133 (271)
Q Consensus        78 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~  133 (271)
                      +..++.+.+.+.+++++...++-.+.. +.|..+-..++..++-.|++++|..-++
T Consensus         5 ~~t~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~   59 (273)
T COG4455           5 RDTISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLN   59 (273)
T ss_pred             HHHHHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHH
Confidence            334444555555555555554444432 2233444455555555555555544443

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=87.32  E-value=2.2  Score=21.30  Aligned_cols=22  Identities=27%  Similarity=0.316  Sum_probs=8.7

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHH
Q 036275          184 SRLAAYSRKKLYRRCLEIFEEM  205 (271)
Q Consensus       184 ~li~~~~~~g~~~~a~~~~~~m  205 (271)
                      .+...+...|++++|.+.|++.
T Consensus         6 ~lg~~~~~~~~~~~A~~~~~~a   27 (34)
T PF07719_consen    6 YLGQAYYQLGNYEEAIEYFEKA   27 (34)
T ss_dssp             HHHHHHHHTT-HHHHHHHHHHH
T ss_pred             HHHHHHHHhCCHHHHHHHHHHH
Confidence            3333444444444444444443

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins

Probab=87.23  E-value=5.7  Score=29.54  Aligned_cols=98  Identities=14%  Similarity=0.123  Sum_probs=47.1

Q ss_pred             HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc---CChHHHHHHHHHHHHC-----CCCCCH-HHHHHHHHHHHccC--
Q 036275           55 FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKT---GNVAKCEGVINQMHKS-----GLKPDT-FVINSMLNLYGRLG--  123 (271)
Q Consensus        55 ~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~---~~~~~a~~~~~~m~~~-----~~~~~~-~~~~~li~~~~~~g--  123 (271)
                      |+.|.+.++.-...+ |.|+..++....++...   ....++.+++++..+.     .+.|+. .++..+..++...+  
T Consensus         7 FE~ark~aea~y~~n-P~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l   85 (186)
T PF06552_consen    7 FEHARKKAEAAYAKN-PLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFL   85 (186)
T ss_dssp             HHHHHHHHHHHHHH--TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhC-cHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhh
Confidence            455666666655554 66777666555555433   3333444444333221     235554 45656666655433  


Q ss_pred             --C-------HhHHHHHHHHHHhCCCCCChhhHHHHHHHHH
Q 036275          124 --Q-------FEKMEEVLTAMEKGSYAADISTYNILINIYG  155 (271)
Q Consensus       124 --~-------~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~  155 (271)
                        +       +++|.+.|+.....  .|+..+|+.-+....
T Consensus        86 ~~d~~~A~~~F~kA~~~FqkAv~~--~P~ne~Y~ksLe~~~  124 (186)
T PF06552_consen   86 TPDTAEAEEYFEKATEYFQKAVDE--DPNNELYRKSLEMAA  124 (186)
T ss_dssp             ---HHHHHHHHHHHHHHHHHHHHH---TT-HHHHHHHHHHH
T ss_pred             cCChHHHHHHHHHHHHHHHHHHhc--CCCcHHHHHHHHHHH
Confidence              2       34444455554443  577777777766653

Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.

>PF13762 MNE1: Mitochondrial splicing apparatus component

Probab=87.07  E-value=9.1  Score=27.41  Aligned_cols=97  Identities=14%  Similarity=0.111  Sum_probs=68.0

Q ss_pred             HHHHcCCCCCHHH--HHHHHHHHHhcCChHHHHHHHHHHHHCC-----CCCCHHHHHHHHHHHHccCC-HhHHHHHHHHH
Q 036275           64 EMKRLGITPTMKS--HMLLLTAYSKTGNVAKCEGVINQMHKSG-----LKPDTFVINSMLNLYGRLGQ-FEKMEEVLTAM  135 (271)
Q Consensus        64 ~~~~~~~~~~~~~--~~~li~~~~~~~~~~~a~~~~~~m~~~~-----~~~~~~~~~~li~~~~~~g~-~~~a~~~~~~m  135 (271)
                      .|.+.+..++..+  .+.++......+++...+.+++.+....     -..+...|++++.+..+..- .--+..+|..|
T Consensus        27 y~~~~~~~~~~k~~fiN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~L  106 (145)
T PF13762_consen   27 YMQEENASQSTKTIFINCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFL  106 (145)
T ss_pred             HhhhcccChhHHHHHHHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHH
Confidence            3444454544433  4667777777788888888887774321     13456678999998866655 45577888999


Q ss_pred             HhCCCCCChhhHHHHHHHHHcCCCH
Q 036275          136 EKGSYAADISTYNILINIYGRGGFI  160 (271)
Q Consensus       136 ~~~~~~~~~~~~~~li~~~~~~g~~  160 (271)
                      ++.+.++++..|..+|.++.+....
T Consensus       107 k~~~~~~t~~dy~~li~~~l~g~~~  131 (145)
T PF13762_consen  107 KKNDIEFTPSDYSCLIKAALRGYFH  131 (145)
T ss_pred             HHcCCCCCHHHHHHHHHHHHcCCCC
Confidence            9888889999999999988876433

>TIGR02508 type_III_yscG type III secretion protein, YscG family

Probab=86.94  E-value=7  Score=25.98  Aligned_cols=86  Identities=14%  Similarity=0.072  Sum_probs=41.9

Q ss_pred             HhHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 036275          125 FEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEE  204 (271)
Q Consensus       125 ~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~  204 (271)
                      .++|..+-+.+...+-. ...+--+-+..+...|++++|..+.+.+    ..||...|-.|-..  +.|..+++..-+.+
T Consensus        21 HqEA~tIAdwL~~~~~~-~E~v~lIRlsSLmNrG~Yq~Al~l~~~~----~~pdlepw~ALce~--rlGl~s~l~~rl~r   93 (115)
T TIGR02508        21 HQEANTIADWLHLKGES-EEAVQLIRLSSLMNRGDYQSALQLGNKL----CYPDLEPWLALCEW--RLGLGSALESRLNR   93 (115)
T ss_pred             HHHHHHHHHHHhcCCch-HHHHHHHHHHHHHccchHHHHHHhcCCC----CCchHHHHHHHHHH--hhccHHHHHHHHHH
Confidence            45565555555544311 2222223344556666666666666555    24555555544332  34444555555555


Q ss_pred             HHHCCCCCCHHHHH
Q 036275          205 MIDAGCYPDGGTAK  218 (271)
Q Consensus       205 m~~~~~~p~~~~~~  218 (271)
                      |...| .|....|.
T Consensus        94 la~sg-~p~lq~Fa  106 (115)
T TIGR02508        94 LAASG-DPRLQTFV  106 (115)
T ss_pred             HHhCC-CHHHHHHH
Confidence            55554 44444443

YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=86.60  E-value=12  Score=33.44  Aligned_cols=137  Identities=12%  Similarity=0.073  Sum_probs=91.4

Q ss_pred             HHHHHhhcC-chHHHHHH--hcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHH
Q 036275           35 INFLLLQHT-PNLFVFIF--SIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFV  111 (271)
Q Consensus        35 ~~f~~~~~~-y~~ll~~~--~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~  111 (271)
                      .++..+|+. -+.+.+-+  .|-.++|+++         .+|+.-   -.....+.|+++.|.++..+..      +..-
T Consensus       607 ~vLp~I~k~~rt~va~Fle~~g~~e~AL~~---------s~D~d~---rFelal~lgrl~iA~~la~e~~------s~~K  668 (794)
T KOG0276|consen  607 GVLPTIPKEIRTKVAHFLESQGMKEQALEL---------STDPDQ---RFELALKLGRLDIAFDLAVEAN------SEVK  668 (794)
T ss_pred             cccccCchhhhhhHHhHhhhccchHhhhhc---------CCChhh---hhhhhhhcCcHHHHHHHHHhhc------chHH
Confidence            445555544 33333333  5656655543         233322   2233457788898888765533      5667


Q ss_pred             HHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHh
Q 036275          112 INSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSR  191 (271)
Q Consensus       112 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~  191 (271)
                      |..|.++..+.+++..|.+.|.....         |..|+-.+...|+.+....+-...++.|.      .|...-+|..
T Consensus       669 w~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~~~~~g~------~N~AF~~~~l  733 (794)
T KOG0276|consen  669 WRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASLAKKQGK------NNLAFLAYFL  733 (794)
T ss_pred             HHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHHHHhhcc------cchHHHHHHH
Confidence            99999999999999999999876654         45677778888888877777777776653      3444556677


Q ss_pred             cCCHHHHHHHHHH
Q 036275          192 KKLYRRCLEIFEE  204 (271)
Q Consensus       192 ~g~~~~a~~~~~~  204 (271)
                      .|+++++.+++.+
T Consensus       734 ~g~~~~C~~lLi~  746 (794)
T KOG0276|consen  734 SGDYEECLELLIS  746 (794)
T ss_pred             cCCHHHHHHHHHh
Confidence            8999998887755

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=86.50  E-value=1.6  Score=21.59  Aligned_cols=22  Identities=5%  Similarity=0.066  Sum_probs=10.3

Q ss_pred             HHHhccCcHHHHHHHHHHHHhc
Q 036275          222 SACSSEDQIEQVTTLVRTMHKD  243 (271)
Q Consensus       222 ~~~~~~g~~~~a~~~~~~~~~~  243 (271)
                      .++.+.|+.++|.+.|+++.+.
T Consensus         8 ~~~~~~g~~~~A~~~~~~~~~~   29 (33)
T PF13174_consen    8 RCYYKLGDYDEAIEYFQRLIKR   29 (33)
T ss_dssp             HHHHHHCHHHHHHHHHHHHHHH
T ss_pred             HHHHHccCHHHHHHHHHHHHHH
Confidence            3344444555555555544443

>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]

Probab=86.49  E-value=1.5  Score=36.97  Aligned_cols=133  Identities=16%  Similarity=-0.000  Sum_probs=86.4

Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHHH----HCCCC-CCHHHHHHHHHHHHccCCHhHHHHHHHHHH----hCCC-CCCh
Q 036275           75 KSHMLLLTAYSKTGNVAKCEGVINQMH----KSGLK-PDTFVINSMLNLYGRLGQFEKMEEVLTAME----KGSY-AADI  144 (271)
Q Consensus        75 ~~~~~li~~~~~~~~~~~a~~~~~~m~----~~~~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~m~----~~~~-~~~~  144 (271)
                      ..|..|.+.|.-.|+++.|+...+.-.    +-|-. .-...+..|.++++-.|+++.|.+.|+...    +.|- ....
T Consensus       196 Ra~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEA  275 (639)
T KOG1130|consen  196 RAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEA  275 (639)
T ss_pred             chhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHH
Confidence            446666666777788888877764432    22321 123457778888888888888888877543    2221 1234


Q ss_pred             hhHHHHHHHHHcCCCHHHHHHHHHhchh----C-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 036275          145 STYNILINIYGRGGFIEKMEGLFQSLPA----K-RLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMID  207 (271)
Q Consensus       145 ~~~~~li~~~~~~g~~~~a~~~~~~m~~----~-g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  207 (271)
                      .++-.|.+.|.-..++++|+..+.+-..    . ...-....|-.|..+|...|..++|+.+....++
T Consensus       276 QscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~  343 (639)
T KOG1130|consen  276 QSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR  343 (639)
T ss_pred             HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence            5566788888888888888888775332    1 1122345777888888888888888777665443

>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models

Probab=86.35  E-value=1.5  Score=20.81  Aligned_cols=16  Identities=19%  Similarity=0.044  Sum_probs=6.4

Q ss_pred             HHHHHcCCCHHHHHHH
Q 036275          151 INIYGRGGFIEKMEGL  166 (271)
Q Consensus       151 i~~~~~~g~~~~a~~~  166 (271)
                      ..++...|++++|..+
T Consensus         8 a~~~~~~G~~~eA~~~   23 (26)
T PF07721_consen    8 ARALLAQGDPDEAERL   23 (26)
T ss_pred             HHHHHHcCCHHHHHHH
Confidence            3333444444444433

The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding

>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]

Probab=85.64  E-value=16  Score=28.73  Aligned_cols=111  Identities=16%  Similarity=0.217  Sum_probs=74.9

Q ss_pred             HHccCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHhchhC-C-----------CCCCHHHHHHHH
Q 036275          119 YGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAK-R-----------LKPDVVTWTSRL  186 (271)
Q Consensus       119 ~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-g-----------~~~~~~~~~~li  186 (271)
                      |.+..+.+--.++.+-.+..+++-+.....+++  +...|+...|+.-++.-... |           -.|.+.....++
T Consensus       169 ysklsd~qiL~Rl~~v~k~Ekv~yt~dgLeaii--fta~GDMRQalNnLQst~~g~g~Vn~enVfKv~d~PhP~~v~~ml  246 (333)
T KOG0991|consen  169 YSKLSDQQILKRLLEVAKAEKVNYTDDGLEAII--FTAQGDMRQALNNLQSTVNGFGLVNQENVFKVCDEPHPLLVKKML  246 (333)
T ss_pred             hcccCHHHHHHHHHHHHHHhCCCCCcchHHHhh--hhccchHHHHHHHHHHHhccccccchhhhhhccCCCChHHHHHHH
Confidence            445555444445555555556666666665554  66789999998888764421 1           167888888888


Q ss_pred             HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHH
Q 036275          187 AAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVT  234 (271)
Q Consensus       187 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~  234 (271)
                      ..|. .+++++|.+++.++-+.|+.|.. ..+.+++.+-... ..+-.
T Consensus       247 ~~~~-~~~~~~A~~il~~lw~lgysp~D-ii~~~FRv~K~~~-~~E~~  291 (333)
T KOG0991|consen  247 QACL-KRNIDEALKILAELWKLGYSPED-IITTLFRVVKNMD-VAESL  291 (333)
T ss_pred             HHHH-hccHHHHHHHHHHHHHcCCCHHH-HHHHHHHHHHhcc-HHHHH
Confidence            8754 57899999999999999988765 4566777765543 44333

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]

Probab=85.46  E-value=15  Score=28.42  Aligned_cols=28  Identities=11%  Similarity=0.013  Sum_probs=14.5

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 036275          181 TWTSRLAAYSRKKLYRRCLEIFEEMIDA  208 (271)
Q Consensus       181 ~~~~li~~~~~~g~~~~a~~~~~~m~~~  208 (271)
                      ||--+.+-+...|+.++|..+|+-....
T Consensus       239 tyFYL~K~~l~~G~~~~A~~LfKLaian  266 (297)
T COG4785         239 TYFYLGKYYLSLGDLDEATALFKLAVAN  266 (297)
T ss_pred             HHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence            4444455555555555555555554443

>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=85.44  E-value=16  Score=28.63  Aligned_cols=21  Identities=5%  Similarity=0.154  Sum_probs=13.0

Q ss_pred             HhccCcHHHHHHHHHHHHhcc
Q 036275          224 CSSEDQIEQVTTLVRTMHKDM  244 (271)
Q Consensus       224 ~~~~g~~~~a~~~~~~~~~~~  244 (271)
                      -...+++.+|.++|+++.+..
T Consensus       164 aa~leqY~~Ai~iyeqva~~s  184 (288)
T KOG1586|consen  164 AAQLEQYSKAIDIYEQVARSS  184 (288)
T ss_pred             HHHHHHHHHHHHHHHHHHHHh
Confidence            445566677777777665543

>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]

Probab=85.33  E-value=8.3  Score=26.83  Aligned_cols=46  Identities=20%  Similarity=0.214  Sum_probs=29.5

Q ss_pred             HHHHHHhchhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 036275          163 MEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDA  208 (271)
Q Consensus       163 a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~  208 (271)
                      ..+-+..+..-.+.|++......++++.+.+|+..|.++|+-+..+
T Consensus        68 vrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K  113 (149)
T KOG4077|consen   68 VRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK  113 (149)
T ss_pred             HHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence            3444445555556677777777777777777777777777666543

>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=85.10  E-value=14  Score=27.56  Aligned_cols=139  Identities=12%  Similarity=0.083  Sum_probs=84.5

Q ss_pred             CHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChhh-HHHHHHHHHcCCCHHHHHHHHHhchhCCCCCCHH-HHHHH
Q 036275          108 DTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADIST-YNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVV-TWTSR  185 (271)
Q Consensus       108 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~-~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~-~~~~l  185 (271)
                      +-..|..-++. ++.+..++|+.-|.++.+.|..--++. ---........|+...|...|+++-.....|-.. -.-.|
T Consensus        58 sgd~flaAL~l-A~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARl  136 (221)
T COG4649          58 SGDAFLAALKL-AQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARL  136 (221)
T ss_pred             chHHHHHHHHH-HHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHH
Confidence            44566665554 456667888888888887765432221 1223344667788888888888877653333322 11111


Q ss_pred             --HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhcccch
Q 036275          186 --LAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKDMKTA  247 (271)
Q Consensus       186 --i~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~  247 (271)
                        .-.+..+|.++......+-+-..+-+.-...-..|--+-.+.|++.+|...|..+......+
T Consensus       137 raa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~Da~ap  200 (221)
T COG4649         137 RAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIANDAQAP  200 (221)
T ss_pred             HHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHccccCc
Confidence              12345678888877777766655433333444556666678888888888888887654433

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=85.06  E-value=3.4  Score=20.67  Aligned_cols=25  Identities=12%  Similarity=0.098  Sum_probs=11.9

Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHH
Q 036275           77 HMLLLTAYSKTGNVAKCEGVINQMH  101 (271)
Q Consensus        77 ~~~li~~~~~~~~~~~a~~~~~~m~  101 (271)
                      |..+...|.+.|++++|...|++..
T Consensus         4 ~~~lg~~y~~~~~~~~A~~~~~~a~   28 (34)
T PF13181_consen    4 YYNLGKIYEQLGDYEEALEYFEKAL   28 (34)
T ss_dssp             HHHHHHHHHHTTSHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            4444444444555555555544443

...

>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]

Probab=85.01  E-value=34  Score=32.11  Aligned_cols=191  Identities=10%  Similarity=0.062  Sum_probs=107.0

Q ss_pred             hcCHHHHHHHHHHHHHcCCCCCH----H---HHHHHHHH-HHhcCChHHHHHHHHHHHHC----CCCCCHHHHHHHHHHH
Q 036275           52 SIYFSDAHAVFEEMKRLGITPTM----K---SHMLLLTA-YSKTGNVAKCEGVINQMHKS----GLKPDTFVINSMLNLY  119 (271)
Q Consensus        52 ~g~~~~A~~~~~~~~~~~~~~~~----~---~~~~li~~-~~~~~~~~~a~~~~~~m~~~----~~~~~~~~~~~li~~~  119 (271)
                      .+++++|..+..++...-..|+.    .   .++.+-.. ....|+++.|.++-+.....    -..+....+..+..+.
T Consensus       428 ~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~a~  507 (894)
T COG2909         428 QHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGEAA  507 (894)
T ss_pred             ccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhHHH
Confidence            89999999999988665322221    1   23333222 23568889998888766654    2334556677778888


Q ss_pred             HccCCHhHHHHHHHHHHhCCCCCChhh---HHHH--HHHHHcCCC--HHHHHHHHHhchhC-----CC-CCCHHHHHHHH
Q 036275          120 GRLGQFEKMEEVLTAMEKGSYAADIST---YNIL--INIYGRGGF--IEKMEGLFQSLPAK-----RL-KPDVVTWTSRL  186 (271)
Q Consensus       120 ~~~g~~~~a~~~~~~m~~~~~~~~~~~---~~~l--i~~~~~~g~--~~~a~~~~~~m~~~-----g~-~~~~~~~~~li  186 (271)
                      .-.|++++|..+..+..+.--.-+...   |..+  ...+..+|+  ..+.+..|......     ++ .+-.-++..+.
T Consensus       508 ~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ll  587 (894)
T COG2909         508 HIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQLL  587 (894)
T ss_pred             HHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHH
Confidence            889999999988877655421223222   2222  334556673  33334444433321     10 11223555556


Q ss_pred             HHHHhc-CCHHHHHHHHHHHHHCCCCCCHHHHH--HHHHHHhccCcHHHHHHHHHHHHh
Q 036275          187 AAYSRK-KLYRRCLEIFEEMIDAGCYPDGGTAK--VLISACSSEDQIEQVTTLVRTMHK  242 (271)
Q Consensus       187 ~~~~~~-g~~~~a~~~~~~m~~~~~~p~~~~~~--~l~~~~~~~g~~~~a~~~~~~~~~  242 (271)
                      .++.+. +...++..-++........|-..-..  .|.+.....|+.++|...+.++..
T Consensus       588 ~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~  646 (894)
T COG2909         588 RAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELER  646 (894)
T ss_pred             HHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence            665551 12222222233322232222222222  567778889999999999998865

>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]

Probab=84.66  E-value=10  Score=29.35  Aligned_cols=66  Identities=9%  Similarity=0.070  Sum_probs=38.0

Q ss_pred             hcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCC--CCCCHHHHHHHHHH
Q 036275           52 SIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSG--LKPDTFVINSMLNL  118 (271)
Q Consensus        52 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~--~~~~~~~~~~li~~  118 (271)
                      .+++.+++....+=.+.+ |.|...-..++..++-.|+|++|..-++-.-...  ..+-..+|..+|++
T Consensus        14 ~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~   81 (273)
T COG4455          14 DNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC   81 (273)
T ss_pred             hccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence            566666666666555543 4455566666777777777777766555444331  22334455555554

>TIGR03504 FimV_Cterm FimV C-terminal domain

Probab=84.54  E-value=2.5  Score=23.30  Aligned_cols=21  Identities=24%  Similarity=0.387  Sum_probs=9.6

Q ss_pred             HHHHHccCCHhHHHHHHHHHH
Q 036275          116 LNLYGRLGQFEKMEEVLTAME  136 (271)
Q Consensus       116 i~~~~~~g~~~~a~~~~~~m~  136 (271)
                      ..+|...|+.+.|.+++++..
T Consensus         6 A~ayie~Gd~e~Ar~lL~evl   26 (44)
T TIGR03504         6 ARAYIEMGDLEGARELLEEVI   26 (44)
T ss_pred             HHHHHHcCChHHHHHHHHHHH
Confidence            344444444444444444444

This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.

>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK

Probab=84.14  E-value=13  Score=26.70  Aligned_cols=51  Identities=10%  Similarity=0.111  Sum_probs=25.9

Q ss_pred             ccCCHhHHHHHHHHHHhCC-CCCChhhHHHHHHHHHcCCCHHHHHHHHHhchhC
Q 036275          121 RLGQFEKMEEVLTAMEKGS-YAADISTYNILINIYGRGGFIEKMEGLFQSLPAK  173 (271)
Q Consensus       121 ~~g~~~~a~~~~~~m~~~~-~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~  173 (271)
                      ..++.+++..+++.|.--. -.+...++..  ..+...|++++|.++|+++...
T Consensus        22 ~~~d~~D~e~lLdALrvLrP~~~e~d~~dg--~l~i~rg~w~eA~rvlr~l~~~   73 (153)
T TIGR02561        22 RSADPYDAQAMLDALRVLRPNLKELDMFDG--WLLIARGNYDEAARILRELLSS   73 (153)
T ss_pred             hcCCHHHHHHHHHHHHHhCCCccccchhHH--HHHHHcCCHHHHHHHHHhhhcc
Confidence            3566666666666655421 0112223322  2345566666666666666654

This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.

>KOG4234 consensus TPR repeat-containing protein [General function prediction only]

Probab=84.13  E-value=17  Score=27.81  Aligned_cols=89  Identities=13%  Similarity=0.122  Sum_probs=58.5

Q ss_pred             HHHHccCCHhHHHHHHHHHHhCCCCCC-----hhhHHHHHHHHHcCCCHHHHHHHHHhchhCCCCCC-HHHHHHHHHHHH
Q 036275          117 NLYGRLGQFEKMEEVLTAMEKGSYAAD-----ISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPD-VVTWTSRLAAYS  190 (271)
Q Consensus       117 ~~~~~~g~~~~a~~~~~~m~~~~~~~~-----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~-~~~~~~li~~~~  190 (271)
                      +-+.+.|++++|..-|.+..+. .++.     ...|..-..++.+.+.++.|++--....+.+  |+ ......-..+|.
T Consensus       103 N~~F~ngdyeeA~skY~~Ale~-cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~--pty~kAl~RRAeaye  179 (271)
T KOG4234|consen  103 NELFKNGDYEEANSKYQEALES-CPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELN--PTYEKALERRAEAYE  179 (271)
T ss_pred             HHhhhcccHHHHHHHHHHHHHh-CccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcC--chhHHHHHHHHHHHH
Confidence            3466788888888888888776 2332     2345555667778888888877777766653  32 122222234677


Q ss_pred             hcCCHHHHHHHHHHHHHC
Q 036275          191 RKKLYRRCLEIFEEMIDA  208 (271)
Q Consensus       191 ~~g~~~~a~~~~~~m~~~  208 (271)
                      +...+++|+.=|+.+++.
T Consensus       180 k~ek~eealeDyKki~E~  197 (271)
T KOG4234|consen  180 KMEKYEEALEDYKKILES  197 (271)
T ss_pred             hhhhHHHHHHHHHHHHHh
Confidence            777888888888888776

>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]

Probab=83.90  E-value=21  Score=28.89  Aligned_cols=183  Identities=9%  Similarity=0.032  Sum_probs=110.9

Q ss_pred             HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc------CC-----hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCC
Q 036275           56 SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKT------GN-----VAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQ  124 (271)
Q Consensus        56 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~------~~-----~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~  124 (271)
                      +.-.+..++..+...+....+|...+.++...      |.     ..+|+++|.-+.+...+  ..+-..++.++....+
T Consensus       104 ekLnraIdr~~k~ve~~~eee~~~~iscfgg~ev~~rqg~~vkWis~KA~ELFayLv~hkgk--~v~~~~~ie~lwpe~D  181 (361)
T COG3947         104 EKLNRAIDRRLKRVELTAEEESGTQISCFGGTEVVLRQGQQVKWISRKALELFAYLVEHKGK--EVTSWEAIEALWPEKD  181 (361)
T ss_pred             HHHHHHHHHHhccccccchhccCeeeEeccceeeeccCCceeeehhhHHHHHHHHHHHhcCC--cccHhHHHHHHccccc
Confidence            33334444444444444566777777776621      11     35778888777665222  2333456677777777


Q ss_pred             HhHHHHHHHHHH-------h-------------------CCCCCChhhHHHHHHHHHcC-CCHHHHHHHHHhchhCCCCC
Q 036275          125 FEKMEEVLTAME-------K-------------------GSYAADISTYNILINIYGRG-GFIEKMEGLFQSLPAKRLKP  177 (271)
Q Consensus       125 ~~~a~~~~~~m~-------~-------------------~~~~~~~~~~~~li~~~~~~-g~~~~a~~~~~~m~~~g~~~  177 (271)
                      ..+|...+....       .                   .+..-|+.-|-..+....+- -.++++.++....+.. .-|
T Consensus       182 ~kka~s~lhTtvyqlRKaLs~L~~ne~vts~d~~Ykld~~~~k~Dv~e~es~~rqi~~inltide~kelv~~ykgd-yl~  260 (361)
T COG3947         182 EKKASSLLHTTVYQLRKALSRLNANEAVTSQDRKYKLDAGLPKYDVQEYESLARQIEAINLTIDELKELVGQYKGD-YLP  260 (361)
T ss_pred             hhhHHHHHHHHHHHHHHHhchhccCceEEEcCCceEEecCCccccHHHHHHHhhhhhccccCHHHHHHHHHHhcCC-cCC
Confidence            766665543221       1                   12234555555555544332 3356666665554211 111


Q ss_pred             -----------------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHH
Q 036275          178 -----------------DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM  240 (271)
Q Consensus       178 -----------------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~  240 (271)
                                       -..+++...+.|..+|.+.+|.++-+..+... +.+...+..+++.+...||--.+..-++++
T Consensus       261 e~~y~Waedererle~ly~kllgkva~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyery  339 (361)
T COG3947         261 EADYPWAEDERERLEQLYMKLLGKVARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERY  339 (361)
T ss_pred             ccccccccchHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHH
Confidence                             11234455578899999999999999988875 778888999999999999988888877776


Q ss_pred             Hh
Q 036275          241 HK  242 (271)
Q Consensus       241 ~~  242 (271)
                      .+
T Consensus       340 a~  341 (361)
T COG3947         340 AE  341 (361)
T ss_pred             HH
Confidence            43

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=83.77  E-value=45  Score=32.50  Aligned_cols=145  Identities=13%  Similarity=0.162  Sum_probs=77.2

Q ss_pred             hcCChHHHHHHHHHHHHC-----CCCCCH--HHHHHHHHHHHccC--CHhHHHHHHHHH------HhCCCCCChhhHHHH
Q 036275           86 KTGNVAKCEGVINQMHKS-----GLKPDT--FVINSMLNLYGRLG--QFEKMEEVLTAM------EKGSYAADISTYNIL  150 (271)
Q Consensus        86 ~~~~~~~a~~~~~~m~~~-----~~~~~~--~~~~~li~~~~~~g--~~~~a~~~~~~m------~~~~~~~~~~~~~~l  150 (271)
                      .+.+..+-+-+++++++.     .+..|.  .-|...+......|  .+++++.+.++=      ..- +.|+...+..+
T Consensus       863 SqkDPkEyLP~L~el~~m~~~~rkF~ID~~L~ry~~AL~hLs~~~~~~~~e~~n~I~kh~Ly~~aL~l-y~~~~e~~k~i  941 (1265)
T KOG1920|consen  863 SQKDPKEYLPFLNELKKMETLLRKFKIDDYLKRYEDALSHLSECGETYFPECKNYIKKHGLYDEALAL-YKPDSEKQKVI  941 (1265)
T ss_pred             hccChHHHHHHHHHHhhchhhhhheeHHHHHHHHHHHHHHHHHcCccccHHHHHHHHhcccchhhhhe-eccCHHHHHHH
Confidence            456666666666666632     112222  12444444444444  455555443321      111 24555544444


Q ss_pred             H----HHHHcCCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH--HHHHHHHH
Q 036275          151 I----NIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGT--AKVLISAC  224 (271)
Q Consensus       151 i----~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~--~~~l~~~~  224 (271)
                      .    +-+...+.+++|--+|+..-+         ....+.+|...|+|.+|+.+..++....   +...  -..|+.-+
T Consensus       942 ~~~ya~hL~~~~~~~~Aal~Ye~~Gk---------lekAl~a~~~~~dWr~~l~~a~ql~~~~---de~~~~a~~L~s~L 1009 (1265)
T KOG1920|consen  942 YEAYADHLREELMSDEAALMYERCGK---------LEKALKAYKECGDWREALSLAAQLSEGK---DELVILAEELVSRL 1009 (1265)
T ss_pred             HHHHHHHHHHhccccHHHHHHHHhcc---------HHHHHHHHHHhccHHHHHHHHHhhcCCH---HHHHHHHHHHHHHH
Confidence            4    444456667777666664432         2345677778888888888777665321   2211  14566667


Q ss_pred             hccCcHHHHHHHHHHHHhc
Q 036275          225 SSEDQIEQVTTLVRTMHKD  243 (271)
Q Consensus       225 ~~~g~~~~a~~~~~~~~~~  243 (271)
                      ...++.-+|-++..+...+
T Consensus      1010 ~e~~kh~eAa~il~e~~sd 1028 (1265)
T KOG1920|consen 1010 VEQRKHYEAAKILLEYLSD 1028 (1265)
T ss_pred             HHcccchhHHHHHHHHhcC
Confidence            7777777777776665433

>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised

Probab=83.66  E-value=5.9  Score=22.24  Aligned_cols=33  Identities=12%  Similarity=0.216  Sum_probs=20.4

Q ss_pred             HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 036275          190 SRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLIS  222 (271)
Q Consensus       190 ~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~  222 (271)
                      .+.|-..++..++++|.+.|+..+...+..+++
T Consensus        13 k~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~   45 (48)
T PF11848_consen   13 KRRGLISEVKPLLDRLQQAGFRISPKLIEEILR   45 (48)
T ss_pred             HHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence            455666666666666666666666666665554

This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.

>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]

Probab=83.31  E-value=11  Score=27.00  Aligned_cols=60  Identities=17%  Similarity=0.254  Sum_probs=29.0

Q ss_pred             HHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC
Q 036275           63 EEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLG  123 (271)
Q Consensus        63 ~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g  123 (271)
                      ..+++.|++++.. -..++..+.+.++.-.|.++|+++.+.+...+..|--.-++.+...|
T Consensus        10 ~~lk~~glr~T~q-R~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~G   69 (145)
T COG0735          10 ERLKEAGLRLTPQ-RLAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAG   69 (145)
T ss_pred             HHHHHcCCCcCHH-HHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCC
Confidence            3344455544443 22445555555555555566666655555444444333344444444

>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]

Probab=83.30  E-value=3.8  Score=34.67  Aligned_cols=131  Identities=11%  Similarity=-0.029  Sum_probs=93.8

Q ss_pred             HHHHHHHHHccCCHhHHHHHHHHHH----hCCCC-CChhhHHHHHHHHHcCCCHHHHHHHHHhch----hCC-CCCCHHH
Q 036275          112 INSMLNLYGRLGQFEKMEEVLTAME----KGSYA-ADISTYNILINIYGRGGFIEKMEGLFQSLP----AKR-LKPDVVT  181 (271)
Q Consensus       112 ~~~li~~~~~~g~~~~a~~~~~~m~----~~~~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~m~----~~g-~~~~~~~  181 (271)
                      |..|.+.|.-.|+++.|+...+.-.    +-|-. .....+..|.+++.-.|+++.|.+.++...    +.| .......
T Consensus       198 ~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQs  277 (639)
T KOG1130|consen  198 YGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQS  277 (639)
T ss_pred             hcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHH
Confidence            5556666666789999987765432    22322 234678889999999999999999988643    222 1234467


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHH----C-CCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHh
Q 036275          182 WTSRLAAYSRKKLYRRCLEIFEEMID----A-GCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHK  242 (271)
Q Consensus       182 ~~~li~~~~~~g~~~~a~~~~~~m~~----~-~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~  242 (271)
                      ...|..+|.-..++.+|+..+.+.+.    . ...-....+.+|..++...|..++|..+.+.-.+
T Consensus       278 cYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~  343 (639)
T KOG1130|consen  278 CYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR  343 (639)
T ss_pred             HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence            78888999888999999888766442    1 1223567888999999999999999988776543

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=82.84  E-value=4.4  Score=20.21  Aligned_cols=26  Identities=23%  Similarity=0.388  Sum_probs=13.3

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHH
Q 036275          182 WTSRLAAYSRKKLYRRCLEIFEEMID  207 (271)
Q Consensus       182 ~~~li~~~~~~g~~~~a~~~~~~m~~  207 (271)
                      |..+...|...|++++|...|++..+
T Consensus         4 ~~~lg~~y~~~~~~~~A~~~~~~a~~   29 (34)
T PF13181_consen    4 YYNLGKIYEQLGDYEEALEYFEKALE   29 (34)
T ss_dssp             HHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            44444555555555555555555443

...

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=82.65  E-value=17  Score=33.44  Aligned_cols=21  Identities=19%  Similarity=0.232  Sum_probs=16.2

Q ss_pred             HHHHHHHhhccccccchhhhh
Q 036275          249 PIYFNLYGEKGVARSNLGQYI  269 (271)
Q Consensus       249 ~~~~~~~~~~G~~~~a~~~~~  269 (271)
                      ..+..+|...|++.+|+..|.
T Consensus       509 e~La~LYl~d~~Y~~Al~~yl  529 (846)
T KOG2066|consen  509 EVLAHLYLYDNKYEKALPIYL  529 (846)
T ss_pred             HHHHHHHHHccChHHHHHHHH
Confidence            337788888888888888764

>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]

Probab=82.57  E-value=26  Score=28.87  Aligned_cols=21  Identities=14%  Similarity=-0.043  Sum_probs=9.5

Q ss_pred             HHHHHHHHcCCCHHHHHHHHH
Q 036275          148 NILINIYGRGGFIEKMEGLFQ  168 (271)
Q Consensus       148 ~~li~~~~~~g~~~~a~~~~~  168 (271)
                      -.....||+-|+.+.|++.+.
T Consensus       108 ~~kaeYycqigDkena~~~~~  128 (393)
T KOG0687|consen  108 LRKAEYYCQIGDKENALEALR  128 (393)
T ss_pred             HHHHHHHHHhccHHHHHHHHH
Confidence            334444444444444444443

>TIGR03504 FimV_Cterm FimV C-terminal domain

Probab=82.40  E-value=4.2  Score=22.38  Aligned_cols=20  Identities=30%  Similarity=0.345  Sum_probs=8.1

Q ss_pred             HHHHhcCCHHHHHHHHHHHH
Q 036275          187 AAYSRKKLYRRCLEIFEEMI  206 (271)
Q Consensus       187 ~~~~~~g~~~~a~~~~~~m~  206 (271)
                      ++|...|+.+.|.+++++..
T Consensus         7 ~ayie~Gd~e~Ar~lL~evl   26 (44)
T TIGR03504         7 RAYIEMGDLEGARELLEEVI   26 (44)
T ss_pred             HHHHHcCChHHHHHHHHHHH
Confidence            33444444444444444433

This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.

>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=81.78  E-value=20  Score=27.11  Aligned_cols=130  Identities=6%  Similarity=-0.040  Sum_probs=86.5

Q ss_pred             CHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChhhHH--HHHHHHHcCCCHHHHHHHHHhchhCCCCCCHHHHHHH
Q 036275          108 DTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYN--ILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSR  185 (271)
Q Consensus       108 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~--~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l  185 (271)
                      -...|..++...- .+.. +.....+.+....-.....++.  .+...+...|++++|+.-++.....   |....+..+
T Consensus        53 AS~~Y~~~i~~~~-ak~~-~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~---t~De~lk~l  127 (207)
T COG2976          53 ASAQYQNAIKAVQ-AKKP-KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQ---TKDENLKAL  127 (207)
T ss_pred             HHHHHHHHHHHHh-cCCc-hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHcc---chhHHHHHH
Confidence            3445777776654 3444 5556666666652111112222  3356788999999999999987653   334444444


Q ss_pred             -----HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhcc
Q 036275          186 -----LAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKDM  244 (271)
Q Consensus       186 -----i~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~  244 (271)
                           .+.....|.+++|+.+++...+.+..  ......--+.+...|+-++|+.-|++..+.+
T Consensus       128 ~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~--~~~~elrGDill~kg~k~~Ar~ay~kAl~~~  189 (207)
T COG2976         128 AALRLARVQLQQKKADAALKTLDTIKEESWA--AIVAELRGDILLAKGDKQEARAAYEKALESD  189 (207)
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHhccccccHH--HHHHHHhhhHHHHcCchHHHHHHHHHHHHcc
Confidence                 45677899999999999988766532  2233344566889999999999999988775

>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)

Probab=81.54  E-value=26  Score=29.72  Aligned_cols=59  Identities=14%  Similarity=0.097  Sum_probs=45.7

Q ss_pred             chHHHHHH-hcCHHHHHHHHHHHHHcCCCCCHH--HHHHHHHHHHh--cCChHHHHHHHHHHHHC
Q 036275           44 PNLFVFIF-SIYFSDAHAVFEEMKRLGITPTMK--SHMLLLTAYSK--TGNVAKCEGVINQMHKS  103 (271)
Q Consensus        44 y~~ll~~~-~g~~~~A~~~~~~~~~~~~~~~~~--~~~~li~~~~~--~~~~~~a~~~~~~m~~~  103 (271)
                      +......| .+++..|.++|+.+..+ ++++..  .+..+..+|..  .-++.+|.+.++.....
T Consensus       135 ~~~a~~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~  198 (379)
T PF09670_consen  135 WRRAKELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR  198 (379)
T ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence            67778888 99999999999999987 665554  55566666654  45678899999887765

>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=81.16  E-value=25  Score=27.77  Aligned_cols=149  Identities=11%  Similarity=0.062  Sum_probs=84.9

Q ss_pred             hcCHHHHHHHHHHHH----HcCCCCCHHHHHHHHH--HHHhcCChHHHHHHHHHHHHC---C--CCCCHHHHHHHHHHHH
Q 036275           52 SIYFSDAHAVFEEMK----RLGITPTMKSHMLLLT--AYSKTGNVAKCEGVINQMHKS---G--LKPDTFVINSMLNLYG  120 (271)
Q Consensus        52 ~g~~~~A~~~~~~~~----~~~~~~~~~~~~~li~--~~~~~~~~~~a~~~~~~m~~~---~--~~~~~~~~~~li~~~~  120 (271)
                      ...+.+|..++++..    +.| .|++... .|-.  -..+..++++|+++|++....   +  ...-...+..+-+.+.
T Consensus        84 ~~klsEvvdl~eKAs~lY~E~G-spdtAAm-aleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lV  161 (308)
T KOG1585|consen   84 LSKLSEVVDLYEKASELYVECG-SPDTAAM-ALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLV  161 (308)
T ss_pred             HHHhHHHHHHHHHHHHHHHHhC-CcchHHH-HHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhh
Confidence            445555666665542    334 3443322 1111  123445677777777765432   1  1112234566667777


Q ss_pred             ccCCHhHHHHHHHHHHhC----CCCCC-hhhHHHHHHHHHcCCCHHHHHHHHHhchhCCC---CCCHHHHHHHHHHHHhc
Q 036275          121 RLGQFEKMEEVLTAMEKG----SYAAD-ISTYNILINIYGRGGFIEKMEGLFQSLPAKRL---KPDVVTWTSRLAAYSRK  192 (271)
Q Consensus       121 ~~g~~~~a~~~~~~m~~~----~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~---~~~~~~~~~li~~~~~~  192 (271)
                      +...+++|-..+..-...    .--++ -..|-..|-.+.-..++..|.+.++.--+.+-   .-+..+...|+.+| ..
T Consensus       162 rl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~  240 (308)
T KOG1585|consen  162 RLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DE  240 (308)
T ss_pred             hhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-cc
Confidence            777787776665433211    11122 23456667777788899999999998544321   22456788888886 55


Q ss_pred             CCHHHHHHHHH
Q 036275          193 KLYRRCLEIFE  203 (271)
Q Consensus       193 g~~~~a~~~~~  203 (271)
                      |+.+++.+++.
T Consensus       241 gD~E~~~kvl~  251 (308)
T KOG1585|consen  241 GDIEEIKKVLS  251 (308)
T ss_pred             CCHHHHHHHHc
Confidence            88888777654

>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed

Probab=81.15  E-value=22  Score=27.07  Aligned_cols=79  Identities=15%  Similarity=0.100  Sum_probs=61.7

Q ss_pred             HHccCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHhchh---CCCCCCHHHHHHHHHHHHhcCCH
Q 036275          119 YGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPA---KRLKPDVVTWTSRLAAYSRKKLY  195 (271)
Q Consensus       119 ~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~---~g~~~~~~~~~~li~~~~~~g~~  195 (271)
                      ..+.|+ +.|.+.|-.+...+.-.++.....|...|. ..+.+++..++.+..+   .+-.+|+..+..|...+.+.|++
T Consensus       117 Wsr~~d-~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~  194 (203)
T PF11207_consen  117 WSRFGD-QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNY  194 (203)
T ss_pred             hhccCc-HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcch
Confidence            445565 678889988988876666666666655555 7889999999998764   23377899999999999999999


Q ss_pred             HHHH
Q 036275          196 RRCL  199 (271)
Q Consensus       196 ~~a~  199 (271)
                      +.|.
T Consensus       195 e~AY  198 (203)
T PF11207_consen  195 EQAY  198 (203)
T ss_pred             hhhh
Confidence            9886

>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion)

Probab=80.99  E-value=14  Score=24.86  Aligned_cols=41  Identities=12%  Similarity=0.111  Sum_probs=16.8

Q ss_pred             CCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhcccchhHHHHH
Q 036275          211 YPDGGTAKVLISACSSEDQIEQVTTLVRTMHKDMKTALPIYFN  253 (271)
Q Consensus       211 ~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~  253 (271)
                      .||...|..|-  -.+.|..+++...+.++..++.+....+..
T Consensus        68 ~pdL~p~~AL~--a~klGL~~~~e~~l~rla~~g~~~~q~Fa~  108 (116)
T PF09477_consen   68 YPDLEPWAALC--AWKLGLASALESRLTRLASSGSPELQAFAA  108 (116)
T ss_dssp             -GGGHHHHHHH--HHHCT-HHHHHHHHHHHCT-SSHHHHHHHH
T ss_pred             CccHHHHHHHH--HHhhccHHHHHHHHHHHHhCCCHHHHHHHH
Confidence            34444443332  224445555555555554444444444433

The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.

>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised

Probab=80.98  E-value=7.5  Score=21.81  Aligned_cols=25  Identities=8%  Similarity=0.288  Sum_probs=9.8

Q ss_pred             CCHhHHHHHHHHHHhCCCCCChhhH
Q 036275          123 GQFEKMEEVLTAMEKGSYAADISTY  147 (271)
Q Consensus       123 g~~~~a~~~~~~m~~~~~~~~~~~~  147 (271)
                      |-.+++..++++|.+.|+..+...+
T Consensus        16 GlI~~~~~~l~~l~~~g~~is~~l~   40 (48)
T PF11848_consen   16 GLISEVKPLLDRLQQAGFRISPKLI   40 (48)
T ss_pred             CChhhHHHHHHHHHHcCcccCHHHH
Confidence            3333344444444444433333333

This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.

>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]

Probab=80.60  E-value=11  Score=26.99  Aligned_cols=58  Identities=9%  Similarity=0.034  Sum_probs=25.7

Q ss_pred             HHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHh
Q 036275          133 TAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSR  191 (271)
Q Consensus       133 ~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~  191 (271)
                      +.+.+.|+.++..= ..++..+...++.-.|.++++++.+.+...+..|-..-+..+..
T Consensus        10 ~~lk~~glr~T~qR-~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e   67 (145)
T COG0735          10 ERLKEAGLRLTPQR-LAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEE   67 (145)
T ss_pred             HHHHHcCCCcCHHH-HHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHH
Confidence            33444444444331 23444444444445555555555554444444443333333333

>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]

Probab=80.21  E-value=14  Score=30.55  Aligned_cols=95  Identities=14%  Similarity=0.023  Sum_probs=61.7

Q ss_pred             HHHHHccCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCCH
Q 036275          116 LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLY  195 (271)
Q Consensus       116 i~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~  195 (271)
                      .+-|.+.|.+++|++.|....... +-+.+++..-..+|.+...+..|+.=-......+ ..-...|+.-..+--..|+.
T Consensus       104 GN~yFKQgKy~EAIDCYs~~ia~~-P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd-~~Y~KAYSRR~~AR~~Lg~~  181 (536)
T KOG4648|consen  104 GNTYFKQGKYEEAIDCYSTAIAVY-PHNPVYHINRALAYLKQKSFAQAEEDCEAAIALD-KLYVKAYSRRMQARESLGNN  181 (536)
T ss_pred             hhhhhhccchhHHHHHhhhhhccC-CCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhh-HHHHHHHHHHHHHHHHHhhH
Confidence            345778899999999998776652 3388888888999999888887766555544331 01123444444554555666


Q ss_pred             HHHHHHHHHHHHCCCCCCH
Q 036275          196 RRCLEIFEEMIDAGCYPDG  214 (271)
Q Consensus       196 ~~a~~~~~~m~~~~~~p~~  214 (271)
                      .+|.+=++..++.  .|+.
T Consensus       182 ~EAKkD~E~vL~L--EP~~  198 (536)
T KOG4648|consen  182 MEAKKDCETVLAL--EPKN  198 (536)
T ss_pred             HHHHHhHHHHHhh--Cccc
Confidence            6666666666554  5654

>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases

Probab=80.11  E-value=32  Score=28.37  Aligned_cols=158  Identities=10%  Similarity=0.059  Sum_probs=86.8

Q ss_pred             hcCHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc-----c
Q 036275           52 SIYFSDAHAVFEEMKRLGI----TPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGR-----L  122 (271)
Q Consensus        52 ~g~~~~A~~~~~~~~~~~~----~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~-----~  122 (271)
                      .++++++....+.....-.    ......|........+...+.+..++.+-.....  .+......++.....     .
T Consensus        42 ~~~~~~~~~~i~~~r~~~~~~l~~~~~~s~~~~y~~l~~lq~L~Elee~~~~~~~~~--~~~~~~~~l~~~W~~Rl~~~~  119 (352)
T PF02259_consen   42 QGDYDEAKKYIEKARQLLLDELSALSSESYQRAYPSLVKLQQLVELEEIIELKSNLS--QNPQDLKSLLKRWRSRLPNMQ  119 (352)
T ss_pred             CccHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhHHHHHHHHHHHHHhhc--ccHHHHHHHHHHHHHHHHHhc
Confidence            8999998888887765411    1123344444444444444444444433332211  012222233332221     2


Q ss_pred             CCHhHHHHHH---HHHHh--CCCCCChhhHHHHHHHHHcCCCHHHHHHHHHhchhCCCCC---CHHHHHHHHHHHHhcCC
Q 036275          123 GQFEKMEEVL---TAMEK--GSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP---DVVTWTSRLAAYSRKKL  194 (271)
Q Consensus       123 g~~~~a~~~~---~~m~~--~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~---~~~~~~~li~~~~~~g~  194 (271)
                      .+++.-..++   ..+.+  ........+|..++..+.+.|+++.|...+.++...+...   .+...-.-.+..-..|+
T Consensus       120 ~~~~~~~~il~~R~~~l~~~~~~~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~  199 (352)
T PF02259_consen  120 DDFSVWEPILSLRRLVLSLILLPEELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGE  199 (352)
T ss_pred             cchHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCC
Confidence            2232222222   22222  1122446788889999999999999999999888753211   33445555666677888


Q ss_pred             HHHHHHHHHHHHHCCCC
Q 036275          195 YRRCLEIFEEMIDAGCY  211 (271)
Q Consensus       195 ~~~a~~~~~~m~~~~~~  211 (271)
                      ..+|...++......+.
T Consensus       200 ~~~Ai~~L~~~~~~~~~  216 (352)
T PF02259_consen  200 QEEAIQKLRELLKCRLS  216 (352)
T ss_pred             HHHHHHHHHHHHHHHhh
Confidence            89999999888774333

Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding

>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised

Probab=80.03  E-value=12  Score=28.14  Aligned_cols=32  Identities=9%  Similarity=-0.001  Sum_probs=16.5

Q ss_pred             CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 036275          176 KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMID  207 (271)
Q Consensus       176 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  207 (271)
                      .|++.+|..++.++...|+.++|.+...++..
T Consensus       141 ~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~  172 (193)
T PF11846_consen  141 RPDPNVYQRYALALALLGDPEEARQWLARARR  172 (193)
T ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            44555555555555555555555555555444

This domain is found in bacteria. This presumed domain is about 200 amino acids in length.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	271
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	2e-16
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	4e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-05

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134

 Score = 78.3 bits (191), Expect = 2e-16
 Identities = 27/201 (13%), Positives = 66/201 (32%), Gaps = 4/201 (1%)

Query: 57  DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSML 116
            A  + +  ++   +P  +    LL       ++   +    Q  ++ L      + +  
Sbjct: 75  MAGCLEDCTRQAPESPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFF 134

Query: 117 NLYGRLGQFEKMEEVLTA---MEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAK 173
                  Q      +L       +      +  YN ++  + R G  +++  +   +   
Sbjct: 135 KCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDA 194

Query: 174 RLKPDVVTWTSRLAAYSRKKLYRRCLE-IFEEMIDAGCYPDGGTAKVLISACSSEDQIEQ 232
            L PD++++ + L    R+      +E   E+M   G         VL+S       ++ 
Sbjct: 195 GLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKA 254

Query: 233 VTTLVRTMHKDMKTALPIYFN 253
           V  +  T     +   P+  +
Sbjct: 255 VHKVKPTFSLPPQLPPPVNTS 275

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134

 Score = 43.7 bits (101), Expect = 4e-05
 Identities = 19/99 (19%), Positives = 34/99 (34%), Gaps = 1/99 (1%)

Query: 55  FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKC-EGVINQMHKSGLKPDTFVIN 113
           F +   V   +K  G+TP + S+   L    +    A   E  + QM + GLK       
Sbjct: 181 FKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTA 240

Query: 114 SMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILIN 152
            +L+   R    + + +V                + L+ 
Sbjct: 241 VLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLR 279

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 42.9 bits (100), Expect = 7e-05
 Identities = 33/226 (14%), Positives = 75/226 (33%), Gaps = 56/226 (24%)

Query: 32  FMLINFLLLQHTPNLFVFIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLT--------- 82
             L   LL +    +  F+  +   +   +   +K     P+M + M +           
Sbjct: 65  LRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQ 124

Query: 83  AYSKTGNVAKCEGVIN-QMHKSGLKPDTFVINSMLNLYGRLGQFEKM---------EEVL 132
            ++K  NV++ +  +  +     L+P   V+     + G LG   K           +V 
Sbjct: 125 VFAK-YNVSRLQPYLKLRQALLELRPAKNVL-----IDGVLG-SGKTWVALDVCLSYKVQ 177

Query: 133 TAMEKGSYAADISTYN-------ILINIYGRGGFIEKMEGLFQSLP--AKRLKPDVVTWT 183
             M+   +  ++   N       +L  +  +      ++  + S    +  +K  + +  
Sbjct: 178 CKMDFKIFWLNLKNCNSPETVLEMLQKLLYQ------IDPNWTSRSDHSSNIKLRIHSIQ 231

Query: 184 SRLAAYSRKKLYRRCLEIF-----EEMIDA---GCYPDGGTAKVLI 221
           + L    + K Y  CL +       +  +A    C       K+L+
Sbjct: 232 AELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSC-------KILL 270

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	271
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	100.0
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	100.0
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	99.9
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	99.9
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	99.86
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	99.85
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	99.82
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	99.8
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.79
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.79
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.77
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.75
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	99.75
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	99.74
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	99.74
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.73
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.73
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	99.72
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.72
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.72
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	99.71
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.71
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.71
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	99.7
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	99.7
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.7
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	99.69
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.69
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.67
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.65
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.65
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	99.64
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.64
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	99.64
2gw1_A	514	Mitochondrial precursor proteins import receptor;	99.64
2gw1_A	514	Mitochondrial precursor proteins import receptor;	99.63
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.63
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.6
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.59
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.59
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	99.58
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	99.58
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.57
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.56
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.55
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	99.54
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	99.53
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	99.53
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.52
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	99.5
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.5
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	99.49
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.48
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.47
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	99.45
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.44
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	99.43
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	99.43
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.43
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.4
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	99.37
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	99.36
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	99.35
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	99.35
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	99.34
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	99.33
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	99.3
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	99.3
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	99.28
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	99.28
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	99.28
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	99.27
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	99.27
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	99.27
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	99.27
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	99.27
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	99.27
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	99.25
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	99.25
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	99.24
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	99.23
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	99.23
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	99.23
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	99.23
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	99.23
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	99.21
4g1t_A	472	Interferon-induced protein with tetratricopeptide	99.17
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	99.17
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	99.15
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	99.13
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	99.13
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	99.13
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	99.12
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	99.11
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	99.09
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	99.08
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	99.07
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	99.07
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	99.06
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	99.05
4g1t_A	472	Interferon-induced protein with tetratricopeptide	99.03
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	99.03
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	99.03
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	99.02
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	98.98
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	98.98
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	98.95
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	98.95
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	98.92
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	98.92
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	98.91
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	98.91
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	98.89
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	98.89
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	98.88
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	98.88
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	98.87
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	98.86
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	98.86
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	98.86
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	98.84
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	98.84
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	98.81
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	98.81
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	98.81
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	98.8
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	98.8
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	98.8
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	98.8
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	98.79
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	98.77
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	98.76
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	98.75
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	98.74
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	98.73
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	98.73
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	98.73
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	98.7
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	98.69
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	98.68
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	98.66
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	98.65
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	98.65
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	98.63
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	98.62
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	98.62
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	98.62
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	98.61
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	98.61
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	98.6
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	98.6
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	98.6
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	98.59
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	98.59
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	98.59
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	98.58
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	98.57
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	98.53
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	98.53
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	98.53
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	98.52
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	98.52
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	98.52
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	98.52
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	98.5
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	98.48
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	98.42
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	98.39
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	98.38
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	98.37
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	98.36
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	98.35
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	98.34
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	98.32
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	98.32
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	98.29
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	98.28
3k9i_A	117	BH0479 protein; putative protein binding protein,	98.28
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	98.27
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	98.26
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	98.24
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	98.24
3k9i_A	117	BH0479 protein; putative protein binding protein,	98.23
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	98.23
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	98.22
1klx_A	138	Cysteine rich protein B; structural genomics, heli	98.22
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	98.21
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	98.18
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	98.17
1klx_A	138	Cysteine rich protein B; structural genomics, heli	98.16
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	98.16
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	98.13
2l6j_A	111	TPR repeat-containing protein associated with HSP;	98.08
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	98.07
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	98.07
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	97.96
2l6j_A	111	TPR repeat-containing protein associated with HSP;	97.91
2kat_A	115	Uncharacterized protein; NESG, structure, structur	97.86
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	97.86
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	97.85
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	97.85
2kat_A	115	Uncharacterized protein; NESG, structure, structur	97.84
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	97.77
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	97.74
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	97.61
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	97.59
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	97.52
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	97.52
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	97.5
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	97.5
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	97.3
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	97.29
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	97.2
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	97.2
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	97.17
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	97.17
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	97.1
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	97.09
3mkq_B	177	Coatomer subunit alpha; beta-propeller, alpha-sole	96.89
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	96.75
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	96.68
3mkq_B	177	Coatomer subunit alpha; beta-propeller, alpha-sole	96.59
1pc2_A	152	Mitochondria fission protein; unknown function; NM	96.52
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	96.4
1pc2_A	152	Mitochondria fission protein; unknown function; NM	96.38
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	96.17
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	95.76
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	95.65
1wy6_A	172	Hypothetical protein ST1625; helical repeat protei	95.62
1wy6_A	172	Hypothetical protein ST1625; helical repeat protei	95.56
4h7y_A	161	Dual specificity protein kinase TTK; mitotic check	95.0
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	94.8
1v54_E	109	Cytochrome C oxidase polypeptide VA; oxidoreductas	94.57
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	94.52
4b4t_P	445	26S proteasome regulatory subunit RPN5; hydrolase,	94.5
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	94.46
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	94.38
4h7y_A	161	Dual specificity protein kinase TTK; mitotic check	94.37
1v54_E	109	Cytochrome C oxidase polypeptide VA; oxidoreductas	94.07
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	94.06
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	93.85
2y69_E	152	Cytochrome C oxidase subunit 5A; electron transpor	92.98
2y69_E	152	Cytochrome C oxidase subunit 5A; electron transpor	91.93
4b4t_P	445	26S proteasome regulatory subunit RPN5; hydrolase,	90.85
2p58_C	116	Putative type III secretion protein YSCG; type III	90.33
2uwj_G	115	Type III export protein PSCG; virulence, chaperone	89.28
4fhn_B	1139	Nucleoporin NUP120; protein complex,structural pro	89.17
4fhn_B	1139	Nucleoporin NUP120; protein complex,structural pro	89.05
3txn_A	394	26S proteasome regulatory complex subunit P42B; PC	89.0
4b4t_R	429	RPN7, 26S proteasome regulatory subunit RPN7; hydr	87.2
3lvg_A	624	Clathrin heavy chain 1; SELF assembly, coated PIT,	87.12
4b4t_R	429	RPN7, 26S proteasome regulatory subunit RPN7; hydr	85.98
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	85.43
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	83.89
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	83.5
3eiq_C	358	Programmed cell death protein 4; PDCD4, anti-oncog	82.95
3lvg_A	624	Clathrin heavy chain 1; SELF assembly, coated PIT,	81.56
2ion_A	152	PDCD4, programmed cell death 4, PDCD4; alpha-helic	81.28
1zbp_A	273	Hypothetical protein VPA1032; alpha-beta protein,	81.18
1zbp_A	273	Hypothetical protein VPA1032; alpha-beta protein,	80.93
2nsz_A	129	Programmed cell death protein 4; PDCD4, tumor supp	80.22

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=100.00  E-value=7.6e-36  Score=255.98  Aligned_cols=184  Identities=13%  Similarity=0.077  Sum_probs=178.0

Q ss_pred             chHHHHHH--hcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC---------hHHHHHHHHHHHHCCCCCCHHHH
Q 036275           44 PNLFVFIF--SIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGN---------VAKCEGVINQMHKSGLKPDTFVI  112 (271)
Q Consensus        44 y~~ll~~~--~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~---------~~~a~~~~~~m~~~~~~~~~~~~  112 (271)
                      ++.+|.+|  .|++++|+++|++|.+.|++||..+|+.||.+|++.+.         +++|.++|++|.+.|+.||..||
T Consensus        29 l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~ty  108 (501)
T 4g26_A           29 LKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEATF  108 (501)
T ss_dssp             HHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHHH
Confidence            78889999  99999999999999999999999999999999997665         68899999999999999999999


Q ss_pred             HHHHHHHHccCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhc
Q 036275          113 NSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRK  192 (271)
Q Consensus       113 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~  192 (271)
                      +++|.+|++.|++++|.++|++|.+.|+.||..+|+++|.+|++.|++++|.++|++|.+.|+.||..||+.||.+|++.
T Consensus       109 n~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~  188 (501)
T 4g26_A          109 TNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDT  188 (501)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc
Q 036275          193 KLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSE  227 (271)
Q Consensus       193 g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~  227 (271)
                      |+.++|.+++++|.+.|+.|+..||+.++..|...
T Consensus       189 g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~  223 (501)
T 4g26_A          189 KNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE  223 (501)
T ss_dssp             TCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred             CCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence            99999999999999999999999999999998764

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=100.00  E-value=2.1e-35  Score=253.26  Aligned_cols=204  Identities=12%  Similarity=0.160  Sum_probs=174.0

Q ss_pred             HHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCC---------H
Q 036275           56 SDAHAVFEEMKRLGITPTMK-SHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQ---------F  125 (271)
Q Consensus        56 ~~A~~~~~~~~~~~~~~~~~-~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~---------~  125 (271)
                      ..+..+.+++.+.++.+++. .++.+|.+|++.|++++|+++|++|.+.|+.||..|||+||.+|++.+.         +
T Consensus         7 s~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l   86 (501)
T 4g26_A            7 SPSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGL   86 (501)
T ss_dssp             -----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHH
T ss_pred             chHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchH
Confidence            34556667787777766554 5889999999999999999999999999999999999999999987765         6


Q ss_pred             hHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 036275          126 EKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEM  205 (271)
Q Consensus       126 ~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m  205 (271)
                      ++|.++|++|.+.|+.||..||+++|.+|++.|++++|.++|++|.+.|+.||..||+.+|.+|++.|++++|.++|++|
T Consensus        87 ~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M  166 (501)
T 4g26_A           87 SRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHM  166 (501)
T ss_dssp             HHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHH
Confidence            88999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhcccchhHH----HHHHHhhcc
Q 036275          206 IDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKDMKTALPI----YFNLYGEKG  259 (271)
Q Consensus       206 ~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~----~~~~~~~~G  259 (271)
                      .+.|+.||..||+.||.+|++.|++++|.+++++|.+.+..+...    +...|...+
T Consensus       167 ~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~~  224 (501)
T 4g26_A          167 VESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSEV  224 (501)
T ss_dssp             HHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSHH
T ss_pred             HhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcCc
Confidence            999999999999999999999999999999999999887665544    444555543

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=99.90  E-value=9.3e-22  Score=172.59  Aligned_cols=213  Identities=9%  Similarity=-0.061  Sum_probs=142.3

Q ss_pred             hcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHhHHHHH
Q 036275           52 SIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEV  131 (271)
Q Consensus        52 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~  131 (271)
                      .|++++|.++|+++.+.. +.+..+|+.++..|.+.|++++|.++|+++.+.. +.+..+|+.++.+|.+.|++++|.++
T Consensus       352 ~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~  429 (597)
T 2xpi_A          352 SGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISA  429 (597)
T ss_dssp             HTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred             hCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence            444444444444443332 3456667777777777777777777777776643 23566777777777777777777777


Q ss_pred             HHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC---
Q 036275          132 LTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDA---  208 (271)
Q Consensus       132 ~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~---  208 (271)
                      |+++.+.+ +.+..+|+.++.+|.+.|++++|.++|+++.+.. +.+..+|+.++..|.+.|++++|.++|+++.+.   
T Consensus       430 ~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~  507 (597)
T 2xpi_A          430 YTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKK  507 (597)
T ss_dssp             HHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhc
Confidence            77776653 4466777777777777777777777777776543 235677777777777777777777777777654   


Q ss_pred             -CCCCC--HHHHHHHHHHHhccCcHHHHHHHHHHHHhcccc---hhHHHHHHHhhccccccchhhh
Q 036275          209 -GCYPD--GGTAKVLISACSSEDQIEQVTTLVRTMHKDMKT---ALPIYFNLYGEKGVARSNLGQY  268 (271)
Q Consensus       209 -~~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~---~~~~~~~~~~~~G~~~~a~~~~  268 (271)
                       +..|+  ..+|..+..+|.+.|++++|.++++++.+.++.   .+..+..+|.+.|+.++|++.|
T Consensus       508 ~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~  573 (597)
T 2xpi_A          508 TQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHL  573 (597)
T ss_dssp             SCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             cccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHH
Confidence             55666  667777777777777777777777777665433   3444566677777777777665

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=99.90  E-value=1.4e-21  Score=171.39  Aligned_cols=233  Identities=6%  Similarity=-0.075  Sum_probs=204.6

Q ss_pred             hHHHHHHHhhcC------chHHHHHH--hcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 036275           32 FMLINFLLLQHT------PNLFVFIF--SIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKS  103 (271)
Q Consensus        32 ~~~~~f~~~~~~------y~~ll~~~--~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~  103 (271)
                      .+..+|+.+...      |+.++.+|  .|++++|.++|+++.+.+ +.+..++..++.++.+.|++++|..+++++.+.
T Consensus       290 ~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  368 (597)
T 2xpi_A          290 RAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDR  368 (597)
T ss_dssp             HHHHHHHTSTTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhhcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhh
Confidence            477888877652      88888888  999999999999999876 558889999999999999999999999999866


Q ss_pred             CCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHhchhCCCCCCHHHHH
Q 036275          104 GLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWT  183 (271)
Q Consensus       104 ~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~  183 (271)
                      . +.+..+++.++..|.+.|++++|.++|+++.+.. +.+..+|+.++.+|.+.|++++|.++|+++...+ +.+..+|.
T Consensus       369 ~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~  445 (597)
T 2xpi_A          369 H-PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYL  445 (597)
T ss_dssp             C-TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHH
T ss_pred             C-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHH
Confidence            4 4578899999999999999999999999998863 4568899999999999999999999999998764 34788999


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhcc------c----chhHHHHH
Q 036275          184 SRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKDM------K----TALPIYFN  253 (271)
Q Consensus       184 ~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~------~----~~~~~~~~  253 (271)
                      .++.+|.+.|++++|.++|+++.+.. +.+..+|..++..+.+.|++++|.++|+++.+..      +    ..+..+..
T Consensus       446 ~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~  524 (597)
T 2xpi_A          446 FLGMQHMQLGNILLANEYLQSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGH  524 (597)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHH
Confidence            99999999999999999999999864 4578999999999999999999999999997652      2    23456778


Q ss_pred             HHhhccccccchhhhh
Q 036275          254 LYGEKGVARSNLGQYI  269 (271)
Q Consensus       254 ~~~~~G~~~~a~~~~~  269 (271)
                      +|.+.|+.++|++.|.
T Consensus       525 ~~~~~g~~~~A~~~~~  540 (597)
T 2xpi_A          525 AYRKLKMYDAAIDALN  540 (597)
T ss_dssp             HHHHTTCHHHHHHHHH
T ss_pred             HHHHhcCHHHHHHHHH
Confidence            8999999999998763

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}

Probab=99.86  E-value=5.6e-22  Score=176.62  Aligned_cols=147  Identities=14%  Similarity=0.189  Sum_probs=115.7

Q ss_pred             HHHHHHHHHHHHccCCHhHHHHHHHHHHh---CCCCCChhhHHHHHHHHHcCCCHHHHHHHHHhchhCCCCCCHHHHHHH
Q 036275          109 TFVINSMLNLYGRLGQFEKMEEVLTAMEK---GSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSR  185 (271)
Q Consensus       109 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~---~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l  185 (271)
                      ..||++||++|++.|++++|.++|++|.+   .|+.||+.|||+||++|++.|++++|.++|++|.+.|+.||.+||+.+
T Consensus       127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntL  206 (1134)
T 3spa_A          127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAA  206 (1134)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence            46899999999999999999999988764   478899999999999999999999999999999999999999999999


Q ss_pred             HHHHHhcCCH-HHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhcccc---------hhHHHHHHH
Q 036275          186 LAAYSRKKLY-RRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKDMKT---------ALPIYFNLY  255 (271)
Q Consensus       186 i~~~~~~g~~-~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~---------~~~~~~~~~  255 (271)
                      |.++++.|+. ++|.++|++|.+.|+.||..+|+.++..+.+    +.+.+.++++.....+         ..+.+.++|
T Consensus       207 I~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR----~~vL~~Vrkv~P~f~p~~~~~~~~~t~~LL~dl~  282 (1134)
T 3spa_A          207 LQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDR----ATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVY  282 (1134)
T ss_dssp             HHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHH----HHHHHHHGGGCCCCCCCCCCCCCCCCCTTTHHHH
T ss_pred             HHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhH----HHHHHHHHHhCcccCCCCCCcccccchHHHHHHH
Confidence            9999998874 7888999999999999999999988765544    3444444444322221         234466666


Q ss_pred             hhcc
Q 036275          256 GEKG  259 (271)
Q Consensus       256 ~~~G  259 (271)
                      .+.|
T Consensus       283 s~d~  286 (1134)
T 3spa_A          283 AKDG  286 (1134)
T ss_dssp             CCCS
T ss_pred             ccCC
Confidence            6655

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}

Probab=99.85  E-value=9.2e-22  Score=175.28  Aligned_cols=151  Identities=14%  Similarity=0.177  Sum_probs=123.8

Q ss_pred             CHHHHHHHHHHHHhcCChHHHHHHHHHHHH---CCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChhhHHH
Q 036275           73 TMKSHMLLLTAYSKTGNVAKCEGVINQMHK---SGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNI  149 (271)
Q Consensus        73 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~  149 (271)
                      -..+|+++|++|++.|++++|.++|++|.+   .|+.||..|||+||++|++.|++++|.++|++|.+.|+.||..|||+
T Consensus       126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYnt  205 (1134)
T 3spa_A          126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAA  205 (1134)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence            356899999999999999999999988764   48899999999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCC-HHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC------HHHHHHHHH
Q 036275          150 LINIYGRGGF-IEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPD------GGTAKVLIS  222 (271)
Q Consensus       150 li~~~~~~g~-~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~------~~~~~~l~~  222 (271)
                      +|.++++.|+ .++|.++|++|...|+.||..+|+.++.+..+.    .+++.++++ ..++.|+      ..+...|.+
T Consensus       206 LI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~----~vL~~Vrkv-~P~f~p~~~~~~~~~t~~LL~d  280 (1134)
T 3spa_A          206 ALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA----TVLKAVHKV-KPTFSLPPQLPPPVNTSKLLRD  280 (1134)
T ss_dssp             HHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHH----HHHHHHGGG-CCCCCCCCCCCCCCCCCTTTHH
T ss_pred             HHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHH----HHHHHHHHh-CcccCCCCCCcccccchHHHHH
Confidence            9999999998 478999999999999999999999998766554    333444444 3344444      344445555


Q ss_pred             HHhccC
Q 036275          223 ACSSED  228 (271)
Q Consensus       223 ~~~~~g  228 (271)
                      .+.+.+
T Consensus       281 l~s~d~  286 (1134)
T 3spa_A          281 VYAKDG  286 (1134)
T ss_dssp             HHCCCS
T ss_pred             HHccCC
Confidence            566544

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=99.82  E-value=2e-17  Score=137.63  Aligned_cols=220  Identities=10%  Similarity=0.018  Sum_probs=168.1

Q ss_pred             chHHHHHH--hcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 036275           44 PNLFVFIF--SIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGR  121 (271)
Q Consensus        44 y~~ll~~~--~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~  121 (271)
                      +..+...+  .|++++|.+.|+++.+.. |.+..+|..+...+...|++++|...|+++.+.+ +.+...+..+...+..
T Consensus       138 ~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~  215 (388)
T 1w3b_A          138 RSDLGNLLKALGRLEEAKACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKE  215 (388)
T ss_dssp             HHHHHHHHHTTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHH
Confidence            33344444  677777777777777654 4466777777777777777777777777777654 2245667777777777


Q ss_pred             cCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 036275          122 LGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEI  201 (271)
Q Consensus       122 ~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~  201 (271)
                      .|++++|...+++..+.. +.+..++..+..++.+.|++++|.+.|+++.+.. +.+..+|..+...+.+.|++++|...
T Consensus       216 ~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~  293 (388)
T 1w3b_A          216 ARIFDRAVAAYLRALSLS-PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDC  293 (388)
T ss_dssp             TTCTTHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHhhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence            888888888877776652 3457788888899999999999999999888763 22567888899999999999999999


Q ss_pred             HHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhcccch---hHHHHHHHhhccccccchhhh
Q 036275          202 FEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKDMKTA---LPIYFNLYGEKGVARSNLGQY  268 (271)
Q Consensus       202 ~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~~~~~~~~~G~~~~a~~~~  268 (271)
                      ++++.+.. +.+..++..+...+...|++++|...++++.+..+..   ...+..+|.+.|+.++|++.|
T Consensus       294 ~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~  362 (388)
T 1w3b_A          294 YNTALRLC-PTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHY  362 (388)
T ss_dssp             HHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHH
T ss_pred             HHHHHhhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            99988763 5678888889999999999999999999988765543   344667789999999988776

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=99.80  E-value=5e-17  Score=135.26  Aligned_cols=221  Identities=14%  Similarity=0.099  Sum_probs=134.3

Q ss_pred             chHHHHHH--hcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 036275           44 PNLFVFIF--SIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGR  121 (271)
Q Consensus        44 y~~ll~~~--~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~  121 (271)
                      |..+...|  .|++++|++.|+++.+.. |.+..+|..+..++.+.|++++|...|+++.+... -+...+..+...+..
T Consensus        70 ~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~  147 (388)
T 1w3b_A           70 YSNLGNVYKERGQLQEAIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNP-DLYCVRSDLGNLLKA  147 (388)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCT-TCTHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHH
Confidence            55555555  666777777666666553 34455566666666666666666666666555421 123344445555555


Q ss_pred             cCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHhchhCC---------------------------
Q 036275          122 LGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR---------------------------  174 (271)
Q Consensus       122 ~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g---------------------------  174 (271)
                      .|++++|.+.|+++.+.. +.+..+|..+...+.+.|++++|.+.|+++.+.+                           
T Consensus       148 ~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~  226 (388)
T 1w3b_A          148 LGRLEEAKACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAY  226 (388)
T ss_dssp             TSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHH
T ss_pred             ccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            555555555555555432 2234455555555555555555555555443321                           


Q ss_pred             -----CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhcccch-
Q 036275          175 -----LKP-DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKDMKTA-  247 (271)
Q Consensus       175 -----~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-  247 (271)
                           ..| +..++..+...+...|++++|...++++.+.+ +.+..++..+..++.+.|++++|.+.++++.+..+.. 
T Consensus       227 ~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~  305 (388)
T 1w3b_A          227 LRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHA  305 (388)
T ss_dssp             HHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCH
T ss_pred             HHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccH
Confidence                 123 35667777777788888888888888877753 3356677777777888888888888888877655433 


Q ss_pred             --hHHHHHHHhhccccccchhhh
Q 036275          248 --LPIYFNLYGEKGVARSNLGQY  268 (271)
Q Consensus       248 --~~~~~~~~~~~G~~~~a~~~~  268 (271)
                        ...+..+|.+.|+.++|++.|
T Consensus       306 ~~~~~l~~~~~~~g~~~~A~~~~  328 (388)
T 1w3b_A          306 DSLNNLANIKREQGNIEEAVRLY  328 (388)
T ss_dssp             HHHHHHHHHHHTTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHH
Confidence              334556677888888777655

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.79  E-value=2.6e-17  Score=139.32  Aligned_cols=221  Identities=10%  Similarity=-0.033  Sum_probs=187.9

Q ss_pred             chHHHHHH--hcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 036275           44 PNLFVFIF--SIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGR  121 (271)
Q Consensus        44 y~~ll~~~--~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~  121 (271)
                      |..+...+  .|++++|+++|+++.+.. +.+..+|..+..++...|++++|+..|+++.+.+ +.+...+..+..+|.+
T Consensus        29 ~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~  106 (450)
T 2y4t_A           29 HLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRGHLLLK  106 (450)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHH
Confidence            66677777  999999999999998875 6689999999999999999999999999999875 3367889999999999


Q ss_pred             cCCHhHHHHHHHHHHhCCCCCCh---hhHHHH------------HHHHHcCCCHHHHHHHHHhchhCCCCCCHHHHHHHH
Q 036275          122 LGQFEKMEEVLTAMEKGSYAADI---STYNIL------------INIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRL  186 (271)
Q Consensus       122 ~g~~~~a~~~~~~m~~~~~~~~~---~~~~~l------------i~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li  186 (271)
                      .|++++|.+.|+++.+.. +.+.   ..+..+            ...+...|++++|.+.|+++.... +.+..++..+.
T Consensus       107 ~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~  184 (450)
T 2y4t_A          107 QGKLDEAEDDFKKVLKSN-PSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVC-VWDAELRELRA  184 (450)
T ss_dssp             TTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHhcC-CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHH
Confidence            999999999999999863 3344   566655            444899999999999999998753 34678899999


Q ss_pred             HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhcccchhHH---H------------
Q 036275          187 AAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKDMKTALPI---Y------------  251 (271)
Q Consensus       187 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~---~------------  251 (271)
                      ..|...|++++|...++++.+.. +.+..++..+...+...|++++|...++++.+..+.....   +            
T Consensus       185 ~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~  263 (450)
T 2y4t_A          185 ECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIES  263 (450)
T ss_dssp             HHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999998753 4578899999999999999999999999998765544332   2            


Q ss_pred             HHHHhhccccccchhhhh
Q 036275          252 FNLYGEKGVARSNLGQYI  269 (271)
Q Consensus       252 ~~~~~~~G~~~~a~~~~~  269 (271)
                      ..+|.+.|+.++|++.|.
T Consensus       264 ~~~~~~~g~~~~A~~~~~  281 (450)
T 2y4t_A          264 AEELIRDGRYTDATSKYE  281 (450)
T ss_dssp             HHHHHHHTCHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHH
Confidence            677899999999988763

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.79  E-value=7.7e-17  Score=136.45  Aligned_cols=220  Identities=8%  Similarity=-0.015  Sum_probs=154.3

Q ss_pred             chHHHHHH--hcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH---HHHHHH---
Q 036275           44 PNLFVFIF--SIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDT---FVINSM---  115 (271)
Q Consensus        44 y~~ll~~~--~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~---~~~~~l---  115 (271)
                      |..+..+|  .|++++|.+.|+++.+.+ +.+..++..+..+|.+.|++++|...|+++.+.... +.   ..+..+   
T Consensus        63 ~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~l~~~  140 (450)
T 2y4t_A           63 YYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPS-ENEEKEAQSQLIKS  140 (450)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCC-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-ChhhHHHHHHHHHH
Confidence            56666666  888999999998888876 557888888888888899999999998888876321 23   444444   


Q ss_pred             ---------HHHHHccCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHhchhCCCCCCHHHHHHHH
Q 036275          116 ---------LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRL  186 (271)
Q Consensus       116 ---------i~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li  186 (271)
                               ...+...|++++|...++++.+.. +.+..++..+..+|.+.|++++|.+.|+++.... +.+..++..+.
T Consensus       141 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~  218 (450)
T 2y4t_A          141 DEMQRLRSQALNAFGSGDYTAAIAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKIS  218 (450)
T ss_dssp             HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence                     334777888888888888877653 4567777788888888888888888888776542 23567777777


Q ss_pred             HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH------------HHHHhccCcHHHHHHHHHHHHhcccch-------
Q 036275          187 AAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVL------------ISACSSEDQIEQVTTLVRTMHKDMKTA-------  247 (271)
Q Consensus       187 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l------------~~~~~~~g~~~~a~~~~~~~~~~~~~~-------  247 (271)
                      ..+...|++++|...++++.+.. +.+...+..+            ...+...|++++|..+++++.+..+..       
T Consensus       219 ~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~  297 (450)
T 2y4t_A          219 TLYYQLGDHELSLSEVRECLKLD-QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRS  297 (450)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhC-CChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHH
Confidence            77888888888888887776542 2233333333            566777777777777777776654432       


Q ss_pred             hHHHHHHHhhccccccchhhh
Q 036275          248 LPIYFNLYGEKGVARSNLGQY  268 (271)
Q Consensus       248 ~~~~~~~~~~~G~~~~a~~~~  268 (271)
                      ...+..+|.+.|+.++|++.+
T Consensus       298 ~~~l~~~~~~~g~~~~A~~~~  318 (450)
T 2y4t_A          298 KERICHCFSKDEKPVEAIRVC  318 (450)
T ss_dssp             HHHHHHHHHTTTCHHHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHH
Confidence            233445577777777776654

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.77  E-value=6.9e-17  Score=133.26  Aligned_cols=222  Identities=9%  Similarity=-0.052  Sum_probs=179.5

Q ss_pred             chHHHHHH--hcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 036275           44 PNLFVFIF--SIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGR  121 (271)
Q Consensus        44 y~~ll~~~--~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~  121 (271)
                      |..+...+  .|++++|++.|+++.+.. +.+..+|..+...+...|++++|+..|++..+.. +.+..++..+...|..
T Consensus        68 ~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~  145 (365)
T 4eqf_A           68 AFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAVSYTN  145 (365)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHc
Confidence            44444445  999999999999999876 6689999999999999999999999999998875 3367889999999999


Q ss_pred             cCCHhHHHHHHHHHHhCCCCCChh----------hHHHHHHHHHcCCCHHHHHHHHHhchhCCCC-CCHHHHHHHHHHHH
Q 036275          122 LGQFEKMEEVLTAMEKGSYAADIS----------TYNILINIYGRGGFIEKMEGLFQSLPAKRLK-PDVVTWTSRLAAYS  190 (271)
Q Consensus       122 ~g~~~~a~~~~~~m~~~~~~~~~~----------~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~-~~~~~~~~li~~~~  190 (271)
                      .|++++|.+.++++.+.. +.+..          .+..+...+...|++++|.+.++++...... ++..++..+...+.
T Consensus       146 ~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~  224 (365)
T 4eqf_A          146 TSHQQDACEALKNWIKQN-PKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFH  224 (365)
T ss_dssp             TTCHHHHHHHHHHHHHHC-HHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHH
T ss_pred             cccHHHHHHHHHHHHHhC-ccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHH
Confidence            999999999999998752 11222          3344588999999999999999999876322 25889999999999


Q ss_pred             hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhcccch---hHHHHHHHhhccccccchhh
Q 036275          191 RKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKDMKTA---LPIYFNLYGEKGVARSNLGQ  267 (271)
Q Consensus       191 ~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~~~~~~~~~G~~~~a~~~  267 (271)
                      ..|++++|...+++..+.. +.+..++..+..++...|++++|...+++..+..+..   ...+..+|.+.|+.++|++.
T Consensus       225 ~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~  303 (365)
T 4eqf_A          225 LSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAVSN  303 (365)
T ss_dssp             HHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHH
T ss_pred             HCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHH
Confidence            9999999999999998863 4568899999999999999999999999998766554   34456679999999999887


Q ss_pred             hh
Q 036275          268 YI  269 (271)
Q Consensus       268 ~~  269 (271)
                      |.
T Consensus       304 ~~  305 (365)
T 4eqf_A          304 FL  305 (365)
T ss_dssp             HH
T ss_pred             HH
Confidence            63

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.75  E-value=2.8e-16  Score=120.53  Aligned_cols=192  Identities=14%  Similarity=0.019  Sum_probs=137.4

Q ss_pred             chHHHHHH--hcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 036275           44 PNLFVFIF--SIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGR  121 (271)
Q Consensus        44 y~~ll~~~--~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~  121 (271)
                      |..+-..+  .|++++|...|++..+.+ |.+...+..+...+.+.|++++|+..+++..+.. +.+...+..+...+..
T Consensus         8 ~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~   85 (217)
T 2pl2_A            8 PLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLSEAYVA   85 (217)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHH
Confidence            33444444  888888888888887765 5678888888888888888888888888887764 2356677788888888


Q ss_pred             c-----------CCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHH
Q 036275          122 L-----------GQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYS  190 (271)
Q Consensus       122 ~-----------g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~  190 (271)
                      .           |++++|+..+++..+.. |.+...+..+..++...|++++|...|++..+..  .+...+..+..++.
T Consensus        86 ~~~~~~~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la~~~~  162 (217)
T 2pl2_A           86 LYRQAEDRERGKGYLEQALSVLKDAERVN-PRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSALAELYL  162 (217)
T ss_dssp             HHHTCSSHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHH
T ss_pred             hhhhhhhhcccccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHHHHHH
Confidence            8           88888888888887753 4457778888888888888888888888887765  57778888888888


Q ss_pred             hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHH
Q 036275          191 RKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMH  241 (271)
Q Consensus       191 ~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~  241 (271)
                      ..|++++|...+++..+.. +-+...+..+..++...|++++|...+++..
T Consensus       163 ~~g~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~  212 (217)
T 2pl2_A          163 SMGRLDEALAQYAKALEQA-PKDLDLRVRYASALLLKGKAEEAARAAALEH  212 (217)
T ss_dssp             HHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTC---------------
T ss_pred             HcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence            8888888888888887753 3456777778888888888888888877653

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=99.75  E-value=1e-15  Score=123.86  Aligned_cols=222  Identities=7%  Similarity=-0.062  Sum_probs=174.7

Q ss_pred             chHHHHHH--hcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC-ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 036275           44 PNLFVFIF--SIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTG-NVAKCEGVINQMHKSGLKPDTFVINSMLNLYG  120 (271)
Q Consensus        44 y~~ll~~~--~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~-~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~  120 (271)
                      +..+...+  .|++++|...++++.+.. +.+...|..+...+...| ++++|...|++..+.. +.+...+..+...+.
T Consensus        59 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~  136 (330)
T 3hym_B           59 LPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFA  136 (330)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHH
Confidence            33344555  899999999999988765 557788888888888998 8999999999888765 235667888888999


Q ss_pred             ccCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 036275          121 RLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLE  200 (271)
Q Consensus       121 ~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~  200 (271)
                      ..|++++|.+.+++..+.. +.+...+..+...|...|++++|.+.++++.+.. +.+..++..+...+...|++++|..
T Consensus       137 ~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~  214 (330)
T 3hym_B          137 VESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEK  214 (330)
T ss_dssp             HHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHH
Confidence            9999999999999888763 4456777778888999999999999999887763 3357788888899999999999999


Q ss_pred             HHHHHHHCC--------CCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhcccc---hhHHHHHHHhhccccccchhhhh
Q 036275          201 IFEEMIDAG--------CYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKDMKT---ALPIYFNLYGEKGVARSNLGQYI  269 (271)
Q Consensus       201 ~~~~m~~~~--------~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~---~~~~~~~~~~~~G~~~~a~~~~~  269 (271)
                      .+++..+..        .+.+..++..+..++...|++++|...+++..+..+.   ....+..+|.+.|+.++|++.|.
T Consensus       215 ~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~  294 (330)
T 3hym_B          215 WFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFH  294 (330)
T ss_dssp             HHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred             HHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHH
Confidence            998877531        1234567888888899999999999999988765543   34445667888999988887763

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=99.74  E-value=3.8e-15  Score=122.62  Aligned_cols=219  Identities=9%  Similarity=-0.008  Sum_probs=160.0

Q ss_pred             HHHHHH--hcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC
Q 036275           46 LFVFIF--SIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLG  123 (271)
Q Consensus        46 ~ll~~~--~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g  123 (271)
                      .+...+  .|++++|...|+++.+.. +.+..+|..+..++...|++++|...|+++.+.. +.+..++..+...+...|
T Consensus        69 ~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g  146 (368)
T 1fch_A           69 EEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFTNES  146 (368)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcC
Confidence            344444  777777777777777664 5567777777777777777777777777777654 335667777777777777


Q ss_pred             CHhHHHHHHHHHHhCCC-----------------------------------------------CC---ChhhHHHHHHH
Q 036275          124 QFEKMEEVLTAMEKGSY-----------------------------------------------AA---DISTYNILINI  153 (271)
Q Consensus       124 ~~~~a~~~~~~m~~~~~-----------------------------------------------~~---~~~~~~~li~~  153 (271)
                      ++++|.+.++++.+..-                                               .|   +..++..+...
T Consensus       147 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~  226 (368)
T 1fch_A          147 LQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVL  226 (368)
T ss_dssp             CHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHH
Confidence            77777777776654310                                               12   46777888888


Q ss_pred             HHcCCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHH
Q 036275          154 YGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQV  233 (271)
Q Consensus       154 ~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a  233 (271)
                      +.+.|++++|.+.|+++.... +.+..++..+...+...|++++|...+++..+.. +.+..++..+..++...|++++|
T Consensus       227 ~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A  304 (368)
T 1fch_A          227 FNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQ-PGYIRSRYNLGISCINLGAHREA  304 (368)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHH
Confidence            888899999999888877652 2356788888888888999999999888887753 44577888888888888999999


Q ss_pred             HHHHHHHHhccc--------------chhHHHHHHHhhccccccchhhh
Q 036275          234 TTLVRTMHKDMK--------------TALPIYFNLYGEKGVARSNLGQY  268 (271)
Q Consensus       234 ~~~~~~~~~~~~--------------~~~~~~~~~~~~~G~~~~a~~~~  268 (271)
                      ...+++..+..+              ..+..+..+|...|+.++|...+
T Consensus       305 ~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~  353 (368)
T 1fch_A          305 VEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAAD  353 (368)
T ss_dssp             HHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHH
T ss_pred             HHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhH
Confidence            998888765433              23445667788888888887654

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=99.74  E-value=1.6e-15  Score=122.81  Aligned_cols=221  Identities=5%  Similarity=-0.097  Sum_probs=186.9

Q ss_pred             chHHHHHH--hcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 036275           44 PNLFVFIF--SIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGR  121 (271)
Q Consensus        44 y~~ll~~~--~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~  121 (271)
                      +..+...+  .|++++|.++|+++.+.. +.+...+..++.++...|++++|..+++++.+.. +.+...+..+...+..
T Consensus        25 ~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~  102 (330)
T 3hym_B           25 VVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVGCYYLM  102 (330)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHH
Confidence            44445555  999999999999998876 5677788888999999999999999999998864 3367788899999999


Q ss_pred             cC-CHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 036275          122 LG-QFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLE  200 (271)
Q Consensus       122 ~g-~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~  200 (271)
                      .| ++++|.+.+++..+.. +.+...+..+...+...|++++|.+.++++.... +.+...+..+...+...|++++|..
T Consensus       103 ~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~  180 (330)
T 3hym_B          103 VGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTNNSKLAER  180 (330)
T ss_dssp             SCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTTCHHHHHH
T ss_pred             hhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHhhHHHHHH
Confidence            99 9999999999998874 4567889999999999999999999999988763 2245677789999999999999999


Q ss_pred             HHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhcc------------cchhHHHHHHHhhccccccchhhh
Q 036275          201 IFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKDM------------KTALPIYFNLYGEKGVARSNLGQY  268 (271)
Q Consensus       201 ~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~------------~~~~~~~~~~~~~~G~~~~a~~~~  268 (271)
                      .+++..+.. +.+...+..+...+...|++++|...+++..+..            ......+..+|.+.|+.++|++.|
T Consensus       181 ~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~  259 (330)
T 3hym_B          181 FFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYH  259 (330)
T ss_dssp             HHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence            999998864 5567889999999999999999999999987643            123455677899999999998876


Q ss_pred             h
Q 036275          269 I  269 (271)
Q Consensus       269 ~  269 (271)
                      .
T Consensus       260 ~  260 (330)
T 3hym_B          260 R  260 (330)
T ss_dssp             H
T ss_pred             H
Confidence            3

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.73  E-value=5.6e-16  Score=127.80  Aligned_cols=229  Identities=10%  Similarity=0.025  Sum_probs=180.8

Q ss_pred             HHHHHHHhhc----C---chHHHHHH--hcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 036275           33 MLINFLLLQH----T---PNLFVFIF--SIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKS  103 (271)
Q Consensus        33 ~~~~f~~~~~----~---y~~ll~~~--~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~  103 (271)
                      +...|+....    .   |..+...|  .|++++|++.|+++.+.. +.+..+|..+..+|...|++++|...++++.+.
T Consensus        84 A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~  162 (365)
T 4eqf_A           84 TILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAVSYTNTSHQQDACEALKNWIKQ  162 (365)
T ss_dssp             HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHccccHHHHHHHHHHHHHh
Confidence            4555555433    2   77777777  999999999999999876 567999999999999999999999999999875


Q ss_pred             CCCCC-----------HHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCC--ChhhHHHHHHHHHcCCCHHHHHHHHHhc
Q 036275          104 GLKPD-----------TFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAA--DISTYNILINIYGRGGFIEKMEGLFQSL  170 (271)
Q Consensus       104 ~~~~~-----------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~--~~~~~~~li~~~~~~g~~~~a~~~~~~m  170 (271)
                      .  |+           ...+..+...+...|++++|.++++++.+.. +.  +..++..+...|...|++++|.+.|+++
T Consensus       163 ~--p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a  239 (365)
T 4eqf_A          163 N--PKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQN-GDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAA  239 (365)
T ss_dssp             C--HHHHCC-------------------CCHHHHHHHHHHHHHHHHS-CSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             C--ccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhC-cCccCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            3  22           2334456888999999999999999998874 33  6889999999999999999999999998


Q ss_pred             hhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhccc-----
Q 036275          171 PAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKDMK-----  245 (271)
Q Consensus       171 ~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-----  245 (271)
                      .+.. +.+..+|..+..+|...|++++|...+++..+.. +.+..++..+..++...|++++|...+++..+..+     
T Consensus       240 l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~  317 (365)
T 4eqf_A          240 LTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQ-PGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQ  317 (365)
T ss_dssp             HHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC---
T ss_pred             HHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCC
Confidence            8763 3468899999999999999999999999998863 44588899999999999999999999999876442     


Q ss_pred             ----------chhHHHHHHHhhccccccchhh
Q 036275          246 ----------TALPIYFNLYGEKGVARSNLGQ  267 (271)
Q Consensus       246 ----------~~~~~~~~~~~~~G~~~~a~~~  267 (271)
                                ..+..+-.++...|+.+.+.+.
T Consensus       318 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~  349 (365)
T 4eqf_A          318 QQVPHPAISGNIWAALRIALSLMDQPELFQAA  349 (365)
T ss_dssp             ---------CHHHHHHHHHHHHHTCHHHHHHH
T ss_pred             cccchhhhHHHHHHHHHHHHHHcCcHHHHHHH
Confidence                      2345566677888887766544

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.73  E-value=1.2e-15  Score=123.44  Aligned_cols=221  Identities=10%  Similarity=0.002  Sum_probs=162.6

Q ss_pred             chHHHHHH--hcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHH------
Q 036275           44 PNLFVFIF--SIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM------  115 (271)
Q Consensus        44 y~~ll~~~--~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l------  115 (271)
                      |..+...+  .|++++|.+.|+++.+.. +.+..++..+...+...|++++|...++++.+.... +...+..+      
T Consensus        58 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~  135 (327)
T 3cv0_A           58 WRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQ-YEQLGSVNLQADVD  135 (327)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTT-TTTC----------
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc-cHHHHHHHhHHHHH
Confidence            44455555  777777777777777664 456777777777777777777777777777765321 11222222      


Q ss_pred             --------HH-HHHccCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHhchhCCCCCCHHHHHHHH
Q 036275          116 --------LN-LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRL  186 (271)
Q Consensus       116 --------i~-~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li  186 (271)
                              .. .+...|++++|.++++++.+.. +.+..++..+...+...|++++|.+.++++.... +.+..++..+.
T Consensus       136 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~  213 (327)
T 3cv0_A          136 IDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLHASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLG  213 (327)
T ss_dssp             ----------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred             HHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHH
Confidence                    22 2566677777777777777653 4467888899999999999999999999988763 33578899999


Q ss_pred             HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhcccc---------------hhHHH
Q 036275          187 AAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKDMKT---------------ALPIY  251 (271)
Q Consensus       187 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~---------------~~~~~  251 (271)
                      ..+...|++++|...+++..+.. +.+..++..+...+...|++++|.+.+++..+..+.               .+..+
T Consensus       214 ~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l  292 (327)
T 3cv0_A          214 ATLANGNRPQEALDAYNRALDIN-PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFF  292 (327)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHH
Confidence            99999999999999999988753 446788889999999999999999999988765544               23445


Q ss_pred             HHHHhhccccccchhhhh
Q 036275          252 FNLYGEKGVARSNLGQYI  269 (271)
Q Consensus       252 ~~~~~~~G~~~~a~~~~~  269 (271)
                      ..+|.+.|+.++|.+.+.
T Consensus       293 ~~~~~~~g~~~~A~~~~~  310 (327)
T 3cv0_A          293 RMLLNVMNRPDLVELTYA  310 (327)
T ss_dssp             HHHHHHTTCHHHHHHHTT
T ss_pred             HHHHHhcCCHHHHHHHHH
Confidence            677899999998887653

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=99.72  E-value=5.5e-15  Score=120.81  Aligned_cols=220  Identities=10%  Similarity=-0.055  Sum_probs=184.7

Q ss_pred             hHHHHHH--hcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc
Q 036275           45 NLFVFIF--SIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRL  122 (271)
Q Consensus        45 ~~ll~~~--~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~  122 (271)
                      ..+...+  .|++++|+..|+++.+.. +.+..++..+...+...|++++|...++++.+.. +-+...+..+...+...
T Consensus         7 ~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~   84 (359)
T 3ieg_A            7 LELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGHLLLKQ   84 (359)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHHHHHHc
Confidence            3444445  999999999999998876 6688999999999999999999999999998874 33678899999999999


Q ss_pred             CCHhHHHHHHHHHHhCCCC---CChhhHHHH------------HHHHHcCCCHHHHHHHHHhchhCCCCCCHHHHHHHHH
Q 036275          123 GQFEKMEEVLTAMEKGSYA---ADISTYNIL------------INIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLA  187 (271)
Q Consensus       123 g~~~~a~~~~~~m~~~~~~---~~~~~~~~l------------i~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~  187 (271)
                      |++++|...+++..+.. +   .+...+..+            ...+...|++++|.+.++++.... +.+...+..+..
T Consensus        85 ~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~  162 (359)
T 3ieg_A           85 GKLDEAEDDFKKVLKSN-PSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVC-VWDAELRELRAE  162 (359)
T ss_dssp             TCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred             CChHHHHHHHHHHHhcC-CcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCchHHHHHHHH
Confidence            99999999999998863 3   345555555            588999999999999999988763 346788999999


Q ss_pred             HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhcccchhHH---------------HH
Q 036275          188 AYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKDMKTALPI---------------YF  252 (271)
Q Consensus       188 ~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~---------------~~  252 (271)
                      .+...|++++|...+++..+.. +.+..++..+...+...|++++|...+++..+..+.....               ..
T Consensus       163 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~a  241 (359)
T 3ieg_A          163 CFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESA  241 (359)
T ss_dssp             HHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999998864 5578899999999999999999999999998766554432               24


Q ss_pred             HHHhhccccccchhhhh
Q 036275          253 NLYGEKGVARSNLGQYI  269 (271)
Q Consensus       253 ~~~~~~G~~~~a~~~~~  269 (271)
                      ..+.+.|+.++|++.|.
T Consensus       242 ~~~~~~~~~~~A~~~~~  258 (359)
T 3ieg_A          242 EELIRDGRYTDATSKYE  258 (359)
T ss_dssp             HHHHHTTCHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHH
Confidence            55888999999987663

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.72  E-value=5.8e-15  Score=115.23  Aligned_cols=201  Identities=7%  Similarity=0.019  Sum_probs=173.4

Q ss_pred             chHHHHHH--hcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 036275           44 PNLFVFIF--SIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGR  121 (271)
Q Consensus        44 y~~ll~~~--~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~  121 (271)
                      |..+...+  .|++++|.+.|+++.+.. +.+...+..+...+...|++++|.+.++++.+.. +.+...+..+...+..
T Consensus        40 ~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~  117 (252)
T 2ho1_A           40 YIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFLYE  117 (252)
T ss_dssp             HHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHH
Confidence            55666666  999999999999998875 5688999999999999999999999999998875 3367889999999999


Q ss_pred             cCCHhHHHHHHHHHHhCCCCC-ChhhHHHHHHHHHcCCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 036275          122 LGQFEKMEEVLTAMEKGSYAA-DISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLE  200 (271)
Q Consensus       122 ~g~~~~a~~~~~~m~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~  200 (271)
                      .|++++|.++++++.+.+..| +...+..+...+...|++++|.+.++++.... +.+...+..+...+...|++++|..
T Consensus       118 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~  196 (252)
T 2ho1_A          118 QKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKEREYVPARQ  196 (252)
T ss_dssp             TTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCHHHHHH
Confidence            999999999999998833344 56788899999999999999999999988763 2357889999999999999999999


Q ss_pred             HHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhcccchh
Q 036275          201 IFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKDMKTAL  248 (271)
Q Consensus       201 ~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~  248 (271)
                      .+++..+.. +.+...+..+...+...|+.++|.++++++.+..+...
T Consensus       197 ~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~  243 (252)
T 2ho1_A          197 YYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSL  243 (252)
T ss_dssp             HHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSH
T ss_pred             HHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCH
Confidence            999988764 45777888889999999999999999999988765543

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.72  E-value=1.6e-15  Score=116.31  Aligned_cols=194  Identities=11%  Similarity=0.050  Sum_probs=158.9

Q ss_pred             CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChhhHHHH
Q 036275           71 TPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNIL  150 (271)
Q Consensus        71 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l  150 (271)
                      |+++..+..+...+.+.|++++|...|++..+.. +.+...+..+...+.+.|++++|+..+++..+.. |.+...+..+
T Consensus         2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~l   79 (217)
T 2pl2_A            2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVL   79 (217)
T ss_dssp             --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred             CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHH
Confidence            6778899999999999999999999999999875 3377889999999999999999999999998874 5567899999


Q ss_pred             HHHHHcC-----------CCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 036275          151 INIYGRG-----------GFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKV  219 (271)
Q Consensus       151 i~~~~~~-----------g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~  219 (271)
                      ..++...           |++++|...|++..+.. +-+...+..+...+...|++++|...|++..+..  .+...+..
T Consensus        80 g~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~  156 (217)
T 2pl2_A           80 SEAYVALYRQAEDRERGKGYLEQALSVLKDAERVN-PRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSA  156 (217)
T ss_dssp             HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHH
T ss_pred             HHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHH
Confidence            9999999           99999999999988763 2257789999999999999999999999999876  68889999


Q ss_pred             HHHHHhccCcHHHHHHHHHHHHhcccchhH---HHHHHHhhccccccchhhhh
Q 036275          220 LISACSSEDQIEQVTTLVRTMHKDMKTALP---IYFNLYGEKGVARSNLGQYI  269 (271)
Q Consensus       220 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~~~~~G~~~~a~~~~~  269 (271)
                      +..++...|++++|...+++..+..+....   .+..++...|+.++|++.|-
T Consensus       157 la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~  209 (217)
T 2pl2_A          157 LAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAA  209 (217)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC------------
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHH
Confidence            999999999999999999999887665544   35567999999999988763

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=99.71  E-value=5.8e-18  Score=140.34  Aligned_cols=206  Identities=10%  Similarity=0.064  Sum_probs=88.0

Q ss_pred             hHHHHHHHhhcC--chHHHHHH--hcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC
Q 036275           32 FMLINFLLLQHT--PNLFVFIF--SIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKP  107 (271)
Q Consensus        32 ~~~~~f~~~~~~--y~~ll~~~--~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~  107 (271)
                      .|.+.++++++.  |..+..++  .|++++|++.|.+.      +|..+|..++.++...|++++|+.+++..++.  .+
T Consensus        21 ~A~~fae~~~~~~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~--~~   92 (449)
T 1b89_A           21 RAYEFAERCNEPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKK--AR   92 (449)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHhCCChHHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--Cc
Confidence            466677777665  99999999  99999999999652      57779999999999999999999988777664  45


Q ss_pred             CHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHhchhCCCCCCHHHHHHHHH
Q 036275          108 DTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLA  187 (271)
Q Consensus       108 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~  187 (271)
                      ++.+.+.++.+|.+.|+++++.++++       .|+..+|+.+...|...|++++|...|..+         ..|..++.
T Consensus        93 ~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n~~~LA~  156 (449)
T 1b89_A           93 ESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLAS  156 (449)
T ss_dssp             ----------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT---------TCHHHHHH
T ss_pred             cchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------hhHHHHHH
Confidence            67788899999999999999988874       367779999999999999999999999977         36999999


Q ss_pred             HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhcccchhHHHHHHHhhccccccchhh
Q 036275          188 AYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKDMKTALPIYFNLYGEKGVARSNLGQ  267 (271)
Q Consensus       188 ~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~a~~~  267 (271)
                      ++.+.|++++|.+.++++      .+..+|..++.+|...|+++.|......+. ..+.....+++.|.+.|++++|+..
T Consensus       157 ~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-~~ad~l~~lv~~Yek~G~~eEai~l  229 (449)
T 1b89_A          157 TLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-VHADELEELINYYQDRGYFEELITM  229 (449)
T ss_dssp             HHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-TCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-hCHhhHHHHHHHHHHCCCHHHHHHH
Confidence            999999999999999987      378899999999999999999977666544 3333445678889999999999776


Q ss_pred             h
Q 036275          268 Y  268 (271)
Q Consensus       268 ~  268 (271)
                      +
T Consensus       230 L  230 (449)
T 1b89_A          230 L  230 (449)
T ss_dssp             H
T ss_pred             H
Confidence            5

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.71  E-value=3.3e-15  Score=120.77  Aligned_cols=219  Identities=8%  Similarity=-0.062  Sum_probs=180.0

Q ss_pred             hHHHHHH--hcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc
Q 036275           45 NLFVFIF--SIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRL  122 (271)
Q Consensus        45 ~~ll~~~--~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~  122 (271)
                      -.+...+  .|++++|..+|+++.+.. +.+...+..+..++...|++++|...++++.+.. +.+..++..+...+...
T Consensus        25 ~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~  102 (327)
T 3cv0_A           25 MEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNE  102 (327)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHHHHc
Confidence            3344444  999999999999998875 5688999999999999999999999999998874 34778899999999999


Q ss_pred             CCHhHHHHHHHHHHhCCCCCChhhHHHH--------------HH-HHHcCCCHHHHHHHHHhchhCCCCCCHHHHHHHHH
Q 036275          123 GQFEKMEEVLTAMEKGSYAADISTYNIL--------------IN-IYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLA  187 (271)
Q Consensus       123 g~~~~a~~~~~~m~~~~~~~~~~~~~~l--------------i~-~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~  187 (271)
                      |++++|.+.++++.+.. +.+...+..+              .. .+...|++++|.+.++++.... +.+..++..+..
T Consensus       103 ~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~  180 (327)
T 3cv0_A          103 HNANAALASLRAWLLSQ-PQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLHASLGV  180 (327)
T ss_dssp             TCHHHHHHHHHHHHHTS-TTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhC-CccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHHHHHHH
Confidence            99999999999998863 3334444443              33 4788899999999999988763 336789999999


Q ss_pred             HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhcccch---hHHHHHHHhhccccccc
Q 036275          188 AYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKDMKTA---LPIYFNLYGEKGVARSN  264 (271)
Q Consensus       188 ~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~~~~~~~~~G~~~~a  264 (271)
                      .+...|++++|...+++..+.. +.+..++..+...+...|++++|...+++..+..+..   ...+..+|.+.|+.++|
T Consensus       181 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A  259 (327)
T 3cv0_A          181 LYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLA  259 (327)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccHHHH
Confidence            9999999999999999998764 4567889999999999999999999999988765543   44456679999999999


Q ss_pred             hhhh
Q 036275          265 LGQY  268 (271)
Q Consensus       265 ~~~~  268 (271)
                      ++.|
T Consensus       260 ~~~~  263 (327)
T 3cv0_A          260 AKQL  263 (327)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            8876

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.71  E-value=2.6e-14  Score=109.21  Aligned_cols=201  Identities=5%  Similarity=-0.086  Sum_probs=170.8

Q ss_pred             chHHHHHH--hcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 036275           44 PNLFVFIF--SIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGR  121 (271)
Q Consensus        44 y~~ll~~~--~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~  121 (271)
                      |..+...+  .|++++|.+.|+++.+.. +.+...+..+...+...|++++|...+++..+.. +.+..++..+...+..
T Consensus        11 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~   88 (225)
T 2vq2_A           11 KTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWFLCG   88 (225)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHHHHH
Confidence            55566666  999999999999998875 5678899999999999999999999999998864 3367889999999999


Q ss_pred             c-CCHhHHHHHHHHHHhCCCCC-ChhhHHHHHHHHHcCCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 036275          122 L-GQFEKMEEVLTAMEKGSYAA-DISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCL  199 (271)
Q Consensus       122 ~-g~~~~a~~~~~~m~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~  199 (271)
                      . |++++|...++++.+.+..| +...+..+..++...|++++|.+.++++.+.. +.+...+..+...+...|++++|.
T Consensus        89 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~  167 (225)
T 2vq2_A           89 RLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLAGQLGDAD  167 (225)
T ss_dssp             TTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred             hcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHcCCHHHHH
Confidence            9 99999999999998843333 36788999999999999999999999988763 235788999999999999999999


Q ss_pred             HHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhcccch
Q 036275          200 EIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKDMKTA  247 (271)
Q Consensus       200 ~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~  247 (271)
                      ..+++..+.....+...+..+...+...|+.+.+..+++.+.+..+..
T Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~  215 (225)
T 2vq2_A          168 YYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANFPYS  215 (225)
T ss_dssp             HHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCC
Confidence            999998875411567778888888899999999999999987665443

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=99.70  E-value=2.9e-14  Score=116.46  Aligned_cols=221  Identities=8%  Similarity=-0.036  Sum_probs=140.9

Q ss_pred             chHHHHHH--hcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCC--CCHHHHHHH----
Q 036275           44 PNLFVFIF--SIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLK--PDTFVINSM----  115 (271)
Q Consensus        44 y~~ll~~~--~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~--~~~~~~~~l----  115 (271)
                      |..+...+  .|++++|.+.|+++.+.. +.+...|..+...+...|++++|...+++..+....  .+...+..+    
T Consensus        40 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~  118 (359)
T 3ieg_A           40 YYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKAD  118 (359)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHHHHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHH
Confidence            44455555  788888888888877664 446677777778888888888888888777765320  133334333    


Q ss_pred             --------HHHHHccCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHhchhCCCCCCHHHHHHHHH
Q 036275          116 --------LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLA  187 (271)
Q Consensus       116 --------i~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~  187 (271)
                              ...+...|++++|.++++++.+.. +.+...+..+...+...|++++|.+.++++.... +.+..++..+..
T Consensus       119 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~  196 (359)
T 3ieg_A          119 EMQRLRSQALDAFDGADYTAAITFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKIST  196 (359)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence                    466777777777777777776653 4456677777777777777777777777776652 335667777777


Q ss_pred             HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH------------HHHHHHhccCcHHHHHHHHHHHHhcccchhH------
Q 036275          188 AYSRKKLYRRCLEIFEEMIDAGCYPDGGTAK------------VLISACSSEDQIEQVTTLVRTMHKDMKTALP------  249 (271)
Q Consensus       188 ~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~------------~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~------  249 (271)
                      .+...|++++|...+++..+.. +.+...+.            .+...+...|++++|...+++..+..+....      
T Consensus       197 ~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~  275 (359)
T 3ieg_A          197 LYYQLGDHELSLSEVRECLKLD-QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSK  275 (359)
T ss_dssp             HHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHhhC-ccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHH
Confidence            7777777777777777766542 22222222            1244466667777777777766654443221      


Q ss_pred             -HHHHHHhhccccccchhhh
Q 036275          250 -IYFNLYGEKGVARSNLGQY  268 (271)
Q Consensus       250 -~~~~~~~~~G~~~~a~~~~  268 (271)
                       .+..+|.+.|+.++|++.|
T Consensus       276 ~~la~~~~~~~~~~~A~~~~  295 (359)
T 3ieg_A          276 ERICHCFSKDEKPVEAIRIC  295 (359)
T ss_dssp             HHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHccCHHHHHHHH
Confidence             1334566666666666554

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=99.70  E-value=4.7e-15  Score=118.86  Aligned_cols=206  Identities=10%  Similarity=0.112  Sum_probs=100.4

Q ss_pred             hcCHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHhHHHH
Q 036275           52 SIYFSDAHAVFEEMKRLGI-TPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEE  130 (271)
Q Consensus        52 ~g~~~~A~~~~~~~~~~~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~  130 (271)
                      .++.++|++.++++...+. |-+...+..+...+...|++++|++.+++      +.+...+..++..+.+.|++++|.+
T Consensus        78 ~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~  151 (291)
T 3mkr_A           78 HSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARK  151 (291)
T ss_dssp             STTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             CCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHH
Confidence            4455555555555554432 22344444444555555555555555544      2344455555555555555555555


Q ss_pred             HHHHHHhCCCCCChhhH---HHHHHHHHcCCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 036275          131 VLTAMEKGSYAADISTY---NILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMID  207 (271)
Q Consensus       131 ~~~~m~~~~~~~~~~~~---~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  207 (271)
                      .++.+.+..  |+....   ...+..+...|++++|..+|+++... .+.+...++.+..++.+.|++++|...+++..+
T Consensus       152 ~l~~~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~-~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~  228 (291)
T 3mkr_A          152 ELKKMQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK-CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALD  228 (291)
T ss_dssp             HHHHHHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH-SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            555555442  322111   11223333345555555555555544 123445555555555555555555555555554


Q ss_pred             CCCCCCHHHHHHHHHHHhccCcHHH-HHHHHHHHHhcccchhHHHHHHHhhccccccchhhh
Q 036275          208 AGCYPDGGTAKVLISACSSEDQIEQ-VTTLVRTMHKDMKTALPIYFNLYGEKGVARSNLGQY  268 (271)
Q Consensus       208 ~~~~p~~~~~~~l~~~~~~~g~~~~-a~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~a~~~~  268 (271)
                      .. +-+..++..++..+...|+.++ +.++++++.+..+. .+.+.+...+.+.++++...|
T Consensus       229 ~~-p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~-~~~~~d~~~~~~~fd~~~~~~  288 (291)
T 3mkr_A          229 KD-SGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRS-HPFIKEYRAKENDFDRLVLQY  288 (291)
T ss_dssp             HC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHH
T ss_pred             hC-CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHHHHHHHc
Confidence            32 2244455555555555555543 34555555443322 223444555555555555544

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.70  E-value=3.7e-15  Score=115.49  Aligned_cols=203  Identities=5%  Similarity=-0.034  Sum_probs=165.5

Q ss_pred             chHHHHHH--hcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 036275           44 PNLFVFIF--SIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGR  121 (271)
Q Consensus        44 y~~ll~~~--~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~  121 (271)
                      |..+...+  .|++++|...|+++.+.. +.+...+..+...+...|++++|+..+++..+.. +.+...+..+...+..
T Consensus        26 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~  103 (243)
T 2q7f_A           26 GGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGNVYVV  103 (243)
T ss_dssp             ----------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHHHHHH
Confidence            55555556  999999999999998865 5688999999999999999999999999998874 3367889999999999


Q ss_pred             cCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 036275          122 LGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEI  201 (271)
Q Consensus       122 ~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~  201 (271)
                      .|++++|.+.++++.+.. +.+...+..+...+.+.|++++|.+.++++.... +.+...+..+...+...|++++|...
T Consensus       104 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~  181 (243)
T 2q7f_A          104 KEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANEGMLDEALSQ  181 (243)
T ss_dssp             TTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHHHHHH
T ss_pred             hccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcCCHHHHHHH
Confidence            999999999999998864 5578889999999999999999999999988753 33678899999999999999999999


Q ss_pred             HHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhcccchhHHH
Q 036275          202 FEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKDMKTALPIY  251 (271)
Q Consensus       202 ~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~  251 (271)
                      +++..+.. +.+..++..+..++...|++++|.+.++++.+..+......
T Consensus       182 ~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~  230 (243)
T 2q7f_A          182 FAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLAL  230 (243)
T ss_dssp             HHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCHHHH
T ss_pred             HHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcchHHHH
Confidence            99988763 45678899999999999999999999999988766655443

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=99.69  E-value=1.1e-14  Score=116.75  Aligned_cols=210  Identities=9%  Similarity=0.070  Sum_probs=170.8

Q ss_pred             HHHHHH--hcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHcc
Q 036275           46 LFVFIF--SIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKP-DTFVINSMLNLYGRL  122 (271)
Q Consensus        46 ~ll~~~--~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~-~~~~~~~li~~~~~~  122 (271)
                      .+..+|  .|+++.|+..++.   . -+|+..++..+...+...++.++|++.++++...+..| +...+..+...+...
T Consensus        39 ~l~r~yi~~g~~~~al~~~~~---~-~~~~~~a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~  114 (291)
T 3mkr_A           39 FLYRAYLAQRKYGVVLDEIKP---S-SAPELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYD  114 (291)
T ss_dssp             HHHHHHHHTTCHHHHHHHSCT---T-SCHHHHHHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHCCCHHHHHHHhcc---c-CChhHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHC
Confidence            355677  9999999987754   2 36788899999999999999999999999999887545 455677777899999


Q ss_pred             CCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHhchhCCCCCCHHHH---HHHHHHHHhcCCHHHHH
Q 036275          123 GQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTW---TSRLAAYSRKKLYRRCL  199 (271)
Q Consensus       123 g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~---~~li~~~~~~g~~~~a~  199 (271)
                      |++++|++.+++      +.+...+..++..+.+.|++++|.+.|+++.+..  |+....   ..++..+...|++++|.
T Consensus       115 g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~  186 (291)
T 3mkr_A          115 QNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKKMQDQD--EDATLTQLATAWVSLAAGGEKLQDAY  186 (291)
T ss_dssp             TCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHH
T ss_pred             CCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--cCcHHHHHHHHHHHHHhCchHHHHHH
Confidence            999999999987      4678899999999999999999999999998763  553211   22334445569999999


Q ss_pred             HHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhcccchhHH---HHHHHhhccccccchhhh
Q 036275          200 EIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKDMKTALPI---YFNLYGEKGVARSNLGQY  268 (271)
Q Consensus       200 ~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~---~~~~~~~~G~~~~a~~~~  268 (271)
                      .+|+++.+. .+.+...+..+..++...|++++|...+++..+..+.....   +..++...|+.+++...+
T Consensus       187 ~~~~~~l~~-~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~~~eaa~~~  257 (291)
T 3mkr_A          187 YIFQEMADK-CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRY  257 (291)
T ss_dssp             HHHHHHHHH-SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred             HHHHHHHHh-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCHHHHHHH
Confidence            999999987 36688899999999999999999999999998876655544   455688899987765433

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.69  E-value=1.3e-14  Score=113.28  Aligned_cols=197  Identities=11%  Similarity=0.046  Sum_probs=144.8

Q ss_pred             chHHHHHH--hcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCC--CCC----HHHHHHH
Q 036275           44 PNLFVFIF--SIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGL--KPD----TFVINSM  115 (271)
Q Consensus        44 y~~ll~~~--~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~--~~~----~~~~~~l  115 (271)
                      |..+...+  .|++++|.+.|++..+..  .+...|..+..++...|++++|+..+++..+...  .++    ...+..+
T Consensus         8 ~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l   85 (258)
T 3uq3_A            8 EKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARI   85 (258)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHH
Confidence            45555566  999999999999998887  7888999999999999999999999998877531  112    5778899


Q ss_pred             HHHHHccCCHhHHHHHHHHHHhCC-------------------------CCCChhhHHHHHHHHHcCCCHHHHHHHHHhc
Q 036275          116 LNLYGRLGQFEKMEEVLTAMEKGS-------------------------YAADISTYNILINIYGRGGFIEKMEGLFQSL  170 (271)
Q Consensus       116 i~~~~~~g~~~~a~~~~~~m~~~~-------------------------~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m  170 (271)
                      ...+...|++++|.+.+++..+..                         .+.+...+..+...+...|++++|.+.++++
T Consensus        86 ~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a  165 (258)
T 3uq3_A           86 GNAYHKLGDLKKTIEYYQKSLTEHRTADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEM  165 (258)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHcccHHHHHHHHHHHHhcCchhHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence            999999999999999999988732                         1223455666667777777777777777776


Q ss_pred             hhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhcc
Q 036275          171 PAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKDM  244 (271)
Q Consensus       171 ~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~  244 (271)
                      .... +.+..++..+...+...|++++|...+++..+.. +.+...+..+..++...|++++|...+++..+..
T Consensus       166 ~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~  237 (258)
T 3uq3_A          166 IKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAVKEYASALETLDAARTKD  237 (258)
T ss_dssp             HHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC
Confidence            6542 2245666777777777777777777777766643 3345666666777777777777777777665544

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.67  E-value=3.5e-15  Score=117.80  Aligned_cols=219  Identities=8%  Similarity=-0.046  Sum_probs=172.4

Q ss_pred             chHHHHHH--hcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 036275           44 PNLFVFIF--SIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGR  121 (271)
Q Consensus        44 y~~ll~~~--~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~  121 (271)
                      |..+...+  .|++++|.+.|+++.+.+ +.+..+|..+...+...|++++|...|++..+.. +.+...+..+...+..
T Consensus        46 ~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~  123 (275)
T 1xnf_A           46 LYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELD-PTYNYAHLNRGIALYY  123 (275)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-ccccHHHHHHHHHHHH
Confidence            55666666  999999999999998876 5678999999999999999999999999998864 2356788899999999


Q ss_pred             cCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 036275          122 LGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEI  201 (271)
Q Consensus       122 ~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~  201 (271)
                      .|++++|.+.++++.+.  .|+.......+..+...|++++|...+++..... +++...+ .++..+...++.++|...
T Consensus       124 ~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~a~~~  199 (275)
T 1xnf_A          124 GGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKS-DKEQWGW-NIVEFYLGNISEQTLMER  199 (275)
T ss_dssp             TTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHS-CCCSTHH-HHHHHHTTSSCHHHHHHH
T ss_pred             hccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CcchHHH-HHHHHHHHhcCHHHHHHH
Confidence            99999999999999885  3554444555566677799999999998776642 2333333 467777888888999999


Q ss_pred             HHHHHHCCCC--C-CHHHHHHHHHHHhccCcHHHHHHHHHHHHhcccchhHHHHHHHhhccccccchhhh
Q 036275          202 FEEMIDAGCY--P-DGGTAKVLISACSSEDQIEQVTTLVRTMHKDMKTALPIYFNLYGEKGVARSNLGQY  268 (271)
Q Consensus       202 ~~~m~~~~~~--p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~a~~~~  268 (271)
                      ++...+....  | +..++..+...+...|++++|...+++..+..+..+.....++...|+.++|++.+
T Consensus       200 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~l~~~~~a~~~~  269 (275)
T 1xnf_A          200 LKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVEHRYALLELSLLGQDQDDL  269 (275)
T ss_dssp             HHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCHHHHHHHHHHHHHHHC----
T ss_pred             HHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHhhHHHH
Confidence            9887654211  1 14678888999999999999999999999988877777788889999999998765

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.65  E-value=7.8e-14  Score=108.76  Aligned_cols=192  Identities=8%  Similarity=-0.037  Sum_probs=164.6

Q ss_pred             HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChhhHHHHHHH
Q 036275           74 MKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINI  153 (271)
Q Consensus        74 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~  153 (271)
                      ...|..+...+...|++++|...|+++.+.. +.+...+..+...+...|++++|.+.++++.+.. +.+...+..+...
T Consensus        37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~  114 (252)
T 2ho1_A           37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGF  114 (252)
T ss_dssp             HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHH
Confidence            5778889999999999999999999998874 3467889999999999999999999999998863 4578889999999


Q ss_pred             HHcCCCHHHHHHHHHhchhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHH
Q 036275          154 YGRGGFIEKMEGLFQSLPAKRLKP-DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQ  232 (271)
Q Consensus       154 ~~~~g~~~~a~~~~~~m~~~g~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~  232 (271)
                      |...|++++|.+.++++...+..| +...+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++
T Consensus       115 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~  193 (252)
T 2ho1_A          115 LYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKEREYVP  193 (252)
T ss_dssp             HHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCHHH
Confidence            999999999999999988743445 45678889999999999999999999988764 4467889999999999999999


Q ss_pred             HHHHHHHHHhcccchh---HHHHHHHhhccccccchhhh
Q 036275          233 VTTLVRTMHKDMKTAL---PIYFNLYGEKGVARSNLGQY  268 (271)
Q Consensus       233 a~~~~~~~~~~~~~~~---~~~~~~~~~~G~~~~a~~~~  268 (271)
                      |..+++++.+..+...   ..+..+|.+.|+.++|.+.+
T Consensus       194 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~  232 (252)
T 2ho1_A          194 ARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYG  232 (252)
T ss_dssp             HHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHH
Confidence            9999999987655443   44566789999999998765

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.65  E-value=1.3e-13  Score=108.61  Aligned_cols=214  Identities=9%  Similarity=-0.027  Sum_probs=172.4

Q ss_pred             hcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHccCCHhHHH
Q 036275           52 SIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKP--DTFVINSMLNLYGRLGQFEKME  129 (271)
Q Consensus        52 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~--~~~~~~~li~~~~~~g~~~~a~  129 (271)
                      .|++++|++.|++..+.. +.+...+..+..++...|++++|+..+++..+.+..+  ....|..+...+...|++++|+
T Consensus        16 ~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~   94 (272)
T 3u4t_A           16 NNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKKGQDSLAI   94 (272)
T ss_dssp             TTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             hcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHcccHHHHH
Confidence            999999999999998875 4567789999999999999999999999998853222  2345889999999999999999


Q ss_pred             HHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 036275          130 EVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAG  209 (271)
Q Consensus       130 ~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~  209 (271)
                      +.+++..+.. +.+..++..+...|...|++++|.+.|++..+.. +.+...+..+...+...+++++|...+++..+..
T Consensus        95 ~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~  172 (272)
T 3u4t_A           95 QQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYNKEYVKADSSFVKVLELK  172 (272)
T ss_dssp             HHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            9999998863 4567899999999999999999999999998762 3356777777734555669999999999998863


Q ss_pred             CCCCHHHHHHHHHHHhccCc---HHHHHHHHHHHHhcc---cc--------hhHHHHHHHhhccccccchhhhh
Q 036275          210 CYPDGGTAKVLISACSSEDQ---IEQVTTLVRTMHKDM---KT--------ALPIYFNLYGEKGVARSNLGQYI  269 (271)
Q Consensus       210 ~~p~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~---~~--------~~~~~~~~~~~~G~~~~a~~~~~  269 (271)
                       +.+...+..+..++...|+   .++|...+++..+..   +.        ....+-..|.+.|+.++|++.|.
T Consensus       173 -p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~  245 (272)
T 3u4t_A          173 -PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWK  245 (272)
T ss_dssp             -TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             -ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence             3446777778888888787   777888888876542   22        22335566889999999988763

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.64  E-value=1e-12  Score=103.89  Aligned_cols=210  Identities=12%  Similarity=-0.017  Sum_probs=178.8

Q ss_pred             chHHHHHH--hcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 036275           44 PNLFVFIF--SIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSK----TGNVAKCEGVINQMHKSGLKPDTFVINSMLN  117 (271)
Q Consensus        44 y~~ll~~~--~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~  117 (271)
                      +..+-..|  .|++++|.+.|++..+.   .+...+..+...+..    .+++++|+..|++..+.+   +...+..+..
T Consensus         9 ~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~   82 (273)
T 1ouv_A            9 LVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHLLGN   82 (273)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHHHHHH
Confidence            33444445  89999999999999884   366788889999999    999999999999999886   7788888999


Q ss_pred             HHHc----cCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHc----CCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHH
Q 036275          118 LYGR----LGQFEKMEEVLTAMEKGSYAADISTYNILINIYGR----GGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAY  189 (271)
Q Consensus       118 ~~~~----~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~  189 (271)
                      .|..    .+++++|++.|++..+.+   +...+..+...|..    .+++++|.+.|++..+.+   +...+..+...|
T Consensus        83 ~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~  156 (273)
T 1ouv_A           83 LYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILGSLY  156 (273)
T ss_dssp             HHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHH
T ss_pred             HHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHHHHHH
Confidence            9999    999999999999999875   77888999999999    999999999999998875   677888888888


Q ss_pred             Hh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc----cCcHHHHHHHHHHHHhcccch-hHHHHHHHhh---
Q 036275          190 SR----KKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSS----EDQIEQVTTLVRTMHKDMKTA-LPIYFNLYGE---  257 (271)
Q Consensus       190 ~~----~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~-~~~~~~~~~~---  257 (271)
                      ..    .+++++|...+++..+.+   +...+..+...+..    .+++++|...+++..+.+... ...+-.+|.+   
T Consensus       157 ~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~l~~~~~~g~~  233 (273)
T 1ouv_A          157 DAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELENGGGCFNLGAMQYNGEG  233 (273)
T ss_dssp             HHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSS
T ss_pred             HcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCC
Confidence            88    999999999999998875   46777888888888    999999999999988776532 3345566877   


Q ss_pred             -ccccccchhhh
Q 036275          258 -KGVARSNLGQY  268 (271)
Q Consensus       258 -~G~~~~a~~~~  268 (271)
                       .|+.++|++.|
T Consensus       234 ~~~~~~~A~~~~  245 (273)
T 1ouv_A          234 VTRNEKQAIENF  245 (273)
T ss_dssp             SSCCSTTHHHHH
T ss_pred             cccCHHHHHHHH
Confidence             89999998776

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.64  E-value=1.6e-14  Score=113.94  Aligned_cols=212  Identities=10%  Similarity=-0.052  Sum_probs=172.5

Q ss_pred             hcCHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHhHH
Q 036275           52 SIYFSDAHAVFEEMKRLGI---TPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKM  128 (271)
Q Consensus        52 ~g~~~~A~~~~~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a  128 (271)
                      .|++++|++.|+++.+...   +.+..+|..+...+...|++++|...|++..+.. +.+...+..+...+...|++++|
T Consensus        18 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A   96 (275)
T 1xnf_A           18 TLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAA   96 (275)
T ss_dssp             CHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHH
T ss_pred             cchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHHH
Confidence            7899999999999988631   2257788999999999999999999999998875 33688899999999999999999


Q ss_pred             HHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 036275          129 EEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDA  208 (271)
Q Consensus       129 ~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~  208 (271)
                      .+.+++..+.. +.+..++..+...|.+.|++++|.+.|+++...  .|+.......+..+...|++++|...+++....
T Consensus        97 ~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~  173 (275)
T 1xnf_A           97 YEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK  173 (275)
T ss_dssp             HHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence            99999999863 456889999999999999999999999999875  455555555556667789999999999887765


Q ss_pred             CCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhccc-------chhHHHHHHHhhccccccchhhhh
Q 036275          209 GCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKDMK-------TALPIYFNLYGEKGVARSNLGQYI  269 (271)
Q Consensus       209 ~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-------~~~~~~~~~~~~~G~~~~a~~~~~  269 (271)
                      . +++...+ .+...+...++.++|...+++..+..+       .....+..+|.+.|+.++|++.|.
T Consensus       174 ~-~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~  239 (275)
T 1xnf_A          174 S-DKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFK  239 (275)
T ss_dssp             S-CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             C-CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            3 3444444 466777888889999999998876544       233446677999999999998763

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=99.64  E-value=4.5e-14  Score=116.16  Aligned_cols=214  Identities=7%  Similarity=-0.044  Sum_probs=164.8

Q ss_pred             hcCHHHHHH-HHHHHHHcC---CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHhH
Q 036275           52 SIYFSDAHA-VFEEMKRLG---ITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEK  127 (271)
Q Consensus        52 ~g~~~~A~~-~~~~~~~~~---~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~  127 (271)
                      .|++++|.+ .|++..+..   ...+...+..+...+.+.|++++|...|+++.+.. +.+...+..+..++...|++++
T Consensus        38 ~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~  116 (368)
T 1fch_A           38 LSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELL  116 (368)
T ss_dssp             --------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHH
Confidence            788899988 887655432   11135678889999999999999999999999875 3477889999999999999999


Q ss_pred             HHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHhchhCCC--------------------------------
Q 036275          128 MEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL--------------------------------  175 (271)
Q Consensus       128 a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~--------------------------------  175 (271)
                      |.+.++++.+.. +.+..++..+...+...|++++|.+.++++.....                                
T Consensus       117 A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  195 (368)
T 1fch_A          117 AISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDS  195 (368)
T ss_dssp             HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHH
T ss_pred             HHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHhhcc
Confidence            999999998874 55788999999999999999999999998765321                                


Q ss_pred             ---------------CC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHH
Q 036275          176 ---------------KP---DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLV  237 (271)
Q Consensus       176 ---------------~~---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~  237 (271)
                                     .|   +..++..+...+...|++++|...+++..+.. +.+..++..+...+...|++++|...+
T Consensus       196 ~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~  274 (368)
T 1fch_A          196 LFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAAY  274 (368)
T ss_dssp             HHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence                           12   46778888888888899999999888887753 445778888888888889999999998


Q ss_pred             HHHHhcccch---hHHHHHHHhhccccccchhhh
Q 036275          238 RTMHKDMKTA---LPIYFNLYGEKGVARSNLGQY  268 (271)
Q Consensus       238 ~~~~~~~~~~---~~~~~~~~~~~G~~~~a~~~~  268 (271)
                      +++.+..+..   ...+..+|.+.|+.++|++.|
T Consensus       275 ~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~  308 (368)
T 1fch_A          275 RRALELQPGYIRSRYNLGISCINLGAHREAVEHF  308 (368)
T ss_dssp             HHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred             HHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHH
Confidence            8887655443   344566788888888888765

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=99.64  E-value=2.4e-14  Score=122.89  Aligned_cols=221  Identities=10%  Similarity=0.003  Sum_probs=185.8

Q ss_pred             chHHHHHH--hcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 036275           44 PNLFVFIF--SIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGR  121 (271)
Q Consensus        44 y~~ll~~~--~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~  121 (271)
                      |..+...+  .|++++|.+.|+++.+.+  |+...+..+...+...|++++|...++++.+.. +.+...+..+...+..
T Consensus       240 ~~~~~~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~  316 (514)
T 2gw1_A          240 LEHTGIFKFLKNDPLGAHEDIKKAIELF--PRVNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFI  316 (514)
T ss_dssp             HHHHHHHHHHSSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHhhC--ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHH
Confidence            55566666  999999999999998876  338899999999999999999999999998875 3366788999999999


Q ss_pred             cCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 036275          122 LGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEI  201 (271)
Q Consensus       122 ~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~  201 (271)
                      .|++++|...+++..+.. +.+..++..+...+...|++++|.+.++++.... +.+..++..+...+...|++++|...
T Consensus       317 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~  394 (514)
T 2gw1_A          317 LQNYDQAGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQ  394 (514)
T ss_dssp             TTCTTHHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             hCCHHHHHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHH
Confidence            999999999999998874 4567889999999999999999999999988753 23567899999999999999999999


Q ss_pred             HHHHHHCCC-CCC----HHHHHHHHHHHhc---cCcHHHHHHHHHHHHhcccch---hHHHHHHHhhccccccchhhhh
Q 036275          202 FEEMIDAGC-YPD----GGTAKVLISACSS---EDQIEQVTTLVRTMHKDMKTA---LPIYFNLYGEKGVARSNLGQYI  269 (271)
Q Consensus       202 ~~~m~~~~~-~p~----~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~~~~~~---~~~~~~~~~~~G~~~~a~~~~~  269 (271)
                      ++++.+..- .++    ...+..+...+..   .|++++|...+++..+..+..   ...+..+|.+.|+.++|++.|.
T Consensus       395 ~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~  473 (514)
T 2gw1_A          395 YDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFE  473 (514)
T ss_dssp             HHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence            999876321 122    3478888999999   999999999999988765543   3446677999999999988763

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=99.63  E-value=8.5e-14  Score=119.47  Aligned_cols=154  Identities=10%  Similarity=0.012  Sum_probs=96.4

Q ss_pred             HHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHH
Q 036275          111 VINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYS  190 (271)
Q Consensus       111 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~  190 (271)
                      ++..+...+...|++++|...++++.+..  |+..++..+..++...|++++|.+.++++.... +.+..++..+...+.
T Consensus       239 ~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~  315 (514)
T 2gw1_A          239 SLEHTGIFKFLKNDPLGAHEDIKKAIELF--PRVNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNF  315 (514)
T ss_dssp             HHHHHHHHHHHSSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHhhC--ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHH
Confidence            34445555556666666666666655542  225556666666666666666666666655542 224556667777777


Q ss_pred             hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhcccc---hhHHHHHHHhhccccccchhh
Q 036275          191 RKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKDMKT---ALPIYFNLYGEKGVARSNLGQ  267 (271)
Q Consensus       191 ~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~---~~~~~~~~~~~~G~~~~a~~~  267 (271)
                      ..|++++|...+++..+.. +.+...+..+...+...|++++|..+++++.+..+.   ....+..+|.+.|+.++|++.
T Consensus       316 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~  394 (514)
T 2gw1_A          316 ILQNYDQAGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQ  394 (514)
T ss_dssp             HTTCTTHHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HhCCHHHHHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCHHHHHHH
Confidence            7777777777777776653 334566777777777777777777777777654433   233345567777777777765


Q ss_pred             h
Q 036275          268 Y  268 (271)
Q Consensus       268 ~  268 (271)
                      |
T Consensus       395 ~  395 (514)
T 2gw1_A          395 Y  395 (514)
T ss_dssp             H
T ss_pred             H
Confidence            5

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.63  E-value=1.8e-13  Score=104.51  Aligned_cols=195  Identities=10%  Similarity=0.020  Sum_probs=163.2

Q ss_pred             CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChhhHHHH
Q 036275           71 TPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNIL  150 (271)
Q Consensus        71 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l  150 (271)
                      +.++..+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|.+.+++..+.. +.+..++..+
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l   82 (225)
T 2vq2_A            5 NQVSNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNY   82 (225)
T ss_dssp             CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred             cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHH
Confidence            3467788899999999999999999999998864 3367889999999999999999999999998863 5578889999


Q ss_pred             HHHHHcC-CCHHHHHHHHHhchhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC
Q 036275          151 INIYGRG-GFIEKMEGLFQSLPAKRLKPD-VVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSED  228 (271)
Q Consensus       151 i~~~~~~-g~~~~a~~~~~~m~~~g~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g  228 (271)
                      ...+... |++++|.+.++++...+..|+ ...+..+...+...|++++|...++++.+.. +.+...+..+...+...|
T Consensus        83 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~  161 (225)
T 2vq2_A           83 GWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLAG  161 (225)
T ss_dssp             HHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHT
T ss_pred             HHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHcC
Confidence            9999999 999999999999987433444 5788899999999999999999999998763 345788899999999999


Q ss_pred             cHHHHHHHHHHHHhccc-chh---HHHHHHHhhccccccchhhh
Q 036275          229 QIEQVTTLVRTMHKDMK-TAL---PIYFNLYGEKGVARSNLGQY  268 (271)
Q Consensus       229 ~~~~a~~~~~~~~~~~~-~~~---~~~~~~~~~~G~~~~a~~~~  268 (271)
                      ++++|..++++..+..+ ...   ......+...|+.+++...+
T Consensus       162 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~  205 (225)
T 2vq2_A          162 QLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYE  205 (225)
T ss_dssp             CHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHH
Confidence            99999999999887655 333   33445577888887776543

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.60  E-value=6.5e-14  Score=108.38  Aligned_cols=194  Identities=9%  Similarity=0.027  Sum_probs=148.7

Q ss_pred             CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChhhHHHHH
Q 036275           72 PTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILI  151 (271)
Q Consensus        72 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li  151 (271)
                      .++..|..+...+...|++++|...|+++.+.. +.+...+..+...+...|++++|.+.++++.+.. +.+..++..+.
T Consensus        21 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la   98 (243)
T 2q7f_A           21 MASMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAG   98 (243)
T ss_dssp             ---------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHH
Confidence            456778888899999999999999999999864 3467889999999999999999999999998863 45788899999


Q ss_pred             HHHHcCCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHH
Q 036275          152 NIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIE  231 (271)
Q Consensus       152 ~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~  231 (271)
                      ..+...|++++|.+.++++.+.. +.+...+..+...+...|++++|...+++..+.. +.+...+..+...+...|+++
T Consensus        99 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~  176 (243)
T 2q7f_A           99 NVYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANEGMLD  176 (243)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCH
T ss_pred             HHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcCCHH
Confidence            99999999999999999988763 3467889999999999999999999999988763 456788899999999999999


Q ss_pred             HHHHHHHHHHhcccch---hHHHHHHHhhccccccchhhhh
Q 036275          232 QVTTLVRTMHKDMKTA---LPIYFNLYGEKGVARSNLGQYI  269 (271)
Q Consensus       232 ~a~~~~~~~~~~~~~~---~~~~~~~~~~~G~~~~a~~~~~  269 (271)
                      +|...+++..+..+..   ...+..+|.+.|+.++|++.|.
T Consensus       177 ~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~  217 (243)
T 2q7f_A          177 EALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLD  217 (243)
T ss_dssp             HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHH
T ss_pred             HHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHH
Confidence            9999999988765543   3445677999999999988763

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.59  E-value=1.2e-13  Score=107.71  Aligned_cols=194  Identities=12%  Similarity=0.035  Sum_probs=163.1

Q ss_pred             CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhCC--CCCC----hhh
Q 036275           73 TMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGS--YAAD----IST  146 (271)
Q Consensus        73 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~--~~~~----~~~  146 (271)
                      ....|..+...+...|++++|+..|++..+..  .+...+..+..++...|++++|.+.+++..+..  ..++    ..+
T Consensus         4 ~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~   81 (258)
T 3uq3_A            4 MADKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKS   81 (258)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHH
Confidence            35678889999999999999999999999887  688899999999999999999999999987642  1112    588


Q ss_pred             HHHHHHHHHcCCCHHHHHHHHHhchhCC------------------------CCC-CHHHHHHHHHHHHhcCCHHHHHHH
Q 036275          147 YNILINIYGRGGFIEKMEGLFQSLPAKR------------------------LKP-DVVTWTSRLAAYSRKKLYRRCLEI  201 (271)
Q Consensus       147 ~~~li~~~~~~g~~~~a~~~~~~m~~~g------------------------~~~-~~~~~~~li~~~~~~g~~~~a~~~  201 (271)
                      +..+...+...|++++|.+.|++.....                        ..| +...+..+...+...|++++|...
T Consensus        82 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~  161 (258)
T 3uq3_A           82 FARIGNAYHKLGDLKKTIEYYQKSLTEHRTADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKA  161 (258)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHcccHHHHHHHHHHHHhcCchhHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCHHHHHHH
Confidence            9999999999999999999999988732                        122 345788888999999999999999


Q ss_pred             HHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhcccchhH---HHHHHHhhccccccchhhhh
Q 036275          202 FEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKDMKTALP---IYFNLYGEKGVARSNLGQYI  269 (271)
Q Consensus       202 ~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~~~~~G~~~~a~~~~~  269 (271)
                      +++..+.. +.+..++..+..++...|++++|...+++..+..+....   .+..+|.+.|+.++|++.|.
T Consensus       162 ~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~  231 (258)
T 3uq3_A          162 YTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLD  231 (258)
T ss_dssp             HHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence            99998864 456888999999999999999999999999876655443   45567999999999988763

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.59  E-value=7.2e-13  Score=98.40  Aligned_cols=169  Identities=11%  Similarity=-0.018  Sum_probs=121.0

Q ss_pred             CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChhhHHHHHH
Q 036275           73 TMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILIN  152 (271)
Q Consensus        73 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~  152 (271)
                      ++..|..+...+.+.|++++|++.|++..+... -+...+..+..++.+.|++++|...+....... +.+...+..+..
T Consensus         4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~   81 (184)
T 3vtx_A            4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADP-NNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGS   81 (184)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHH
Confidence            566777777777777888888888877776642 256667777777777788888877777776653 445666777777


Q ss_pred             HHHcCCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHH
Q 036275          153 IYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQ  232 (271)
Q Consensus       153 ~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~  232 (271)
                      .+...++++.|.+.+.+..... +-+...+..+...+...|++++|.+.|++..+.. +-+..++..+..++...|++++
T Consensus        82 ~~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~~~~~~g~~~~  159 (184)
T 3vtx_A           82 ANFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIRAYQSIGLAYEGKGLRDE  159 (184)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhhHHHHHHHHHHHCCCHHH
Confidence            7777788888877777766542 2346677777777777888888888877777653 3456677777777777888888


Q ss_pred             HHHHHHHHHhccc
Q 036275          233 VTTLVRTMHKDMK  245 (271)
Q Consensus       233 a~~~~~~~~~~~~  245 (271)
                      |.+.|++..+..+
T Consensus       160 A~~~~~~al~~~p  172 (184)
T 3vtx_A          160 AVKYFKKALEKEE  172 (184)
T ss_dssp             HHHHHHHHHHTTH
T ss_pred             HHHHHHHHHhCCc
Confidence            8888877766543

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=99.58  E-value=9.5e-13  Score=113.69  Aligned_cols=220  Identities=9%  Similarity=0.011  Sum_probs=164.1

Q ss_pred             chHHHHHH--hcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC------------------
Q 036275           44 PNLFVFIF--SIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKS------------------  103 (271)
Q Consensus        44 y~~ll~~~--~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~------------------  103 (271)
                      |..+..+|  .|++++|++.|+++.+.+ |.+..++..+..++...|++++|...|+.+...                  
T Consensus        62 ~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (537)
T 3fp2_A           62 YSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASANESLGNFTDAMFDLSVLSLNGDFDGASIEPMLERNLNK  140 (537)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHC-----------CHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHH
Confidence            66666666  899999999999988876 567888888888888888888888776432100                  


Q ss_pred             --------------------------------------------------------------------------------
Q 036275          104 --------------------------------------------------------------------------------  103 (271)
Q Consensus       104 --------------------------------------------------------------------------------  103 (271)
                                                                                                      
T Consensus       141 ~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~  220 (537)
T 3fp2_A          141 QAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTK  220 (537)
T ss_dssp             HHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHH
Confidence                                                                                            


Q ss_pred             ---------CCCCC--------HHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHH
Q 036275          104 ---------GLKPD--------TFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGL  166 (271)
Q Consensus       104 ---------~~~~~--------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~  166 (271)
                               ...|+        ..++..+...+...|++++|...+++..+.  .|+..++..+...+...|++++|.+.
T Consensus       221 A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~  298 (537)
T 3fp2_A          221 STDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKF  298 (537)
T ss_dssp             HHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHH
T ss_pred             HHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHH
Confidence                     01111        123555556677788888888888888775  45577888888888888888888888


Q ss_pred             HHhchhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhcccc
Q 036275          167 FQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKDMKT  246 (271)
Q Consensus       167 ~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~  246 (271)
                      ++++.... +.+..++..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|..+++++.+..+.
T Consensus       299 ~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~  376 (537)
T 3fp2_A          299 FQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPT  376 (537)
T ss_dssp             HHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             HHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence            88877653 2357788888888888899999999888887753 334567888888888889999999998888766544


Q ss_pred             h---hHHHHHHHhhccccccchhhh
Q 036275          247 A---LPIYFNLYGEKGVARSNLGQY  268 (271)
Q Consensus       247 ~---~~~~~~~~~~~G~~~~a~~~~  268 (271)
                      .   ...+..+|...|+.++|++.|
T Consensus       377 ~~~~~~~l~~~~~~~g~~~~A~~~~  401 (537)
T 3fp2_A          377 LPEVPTFFAEILTDRGDFDTAIKQY  401 (537)
T ss_dssp             CTHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             ChHHHHHHHHHHHHhCCHHHHHHHH
Confidence            3   344566788888888888765

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=99.58  E-value=5.2e-13  Score=115.31  Aligned_cols=213  Identities=10%  Similarity=0.027  Sum_probs=175.6

Q ss_pred             hcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHhHHHHH
Q 036275           52 SIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEV  131 (271)
Q Consensus        52 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~  131 (271)
                      .|++++|.+.|+++.+..  |+...+..+...+...|++++|...+++..+.. +.+..++..+...+...|++++|.+.
T Consensus       256 ~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~  332 (537)
T 3fp2_A          256 KNNLLDAQVLLQESINLH--PTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKED  332 (537)
T ss_dssp             TTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             cccHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHH
Confidence            899999999999998874  558889999999999999999999999998875 33678899999999999999999999


Q ss_pred             HHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC--
Q 036275          132 LTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAG--  209 (271)
Q Consensus       132 ~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~--  209 (271)
                      +++..+.. +.+...+..+...+...|++++|.+.++++.+.. +.+...+..+...+...|++++|...+++..+..  
T Consensus       333 ~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~  410 (537)
T 3fp2_A          333 FQKAQSLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEV  410 (537)
T ss_dssp             HHHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCc
Confidence            99998864 4467889999999999999999999999988763 3356789999999999999999999999987532  


Q ss_pred             ---CCCCHHHHHHHHHHHhcc----------CcHHHHHHHHHHHHhcccch---hHHHHHHHhhccccccchhhhh
Q 036275          210 ---CYPDGGTAKVLISACSSE----------DQIEQVTTLVRTMHKDMKTA---LPIYFNLYGEKGVARSNLGQYI  269 (271)
Q Consensus       210 ---~~p~~~~~~~l~~~~~~~----------g~~~~a~~~~~~~~~~~~~~---~~~~~~~~~~~G~~~~a~~~~~  269 (271)
                         .......+......+...          |++++|...+++..+..+..   ...+..+|.+.|+.++|++.|.
T Consensus       411 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~  486 (537)
T 3fp2_A          411 QEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFE  486 (537)
T ss_dssp             CSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             chhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHH
Confidence               111222344445566666          99999999999998765544   3445677999999999988763

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.57  E-value=2.3e-13  Score=116.35  Aligned_cols=209  Identities=11%  Similarity=-0.022  Sum_probs=175.1

Q ss_pred             CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCh-HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHhHHHHHH
Q 036275           54 YFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNV-AKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVL  132 (271)
Q Consensus        54 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~-~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~  132 (271)
                      .++++++.+++..... +.+...+..+...+...|++ ++|++.|++..+.. +-+...|..+...|...|++++|.+.|
T Consensus        83 ~~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~  160 (474)
T 4abn_A           83 EMEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCF  160 (474)
T ss_dssp             HHHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            4667777777665543 45888999999999999999 99999999998874 235788999999999999999999999


Q ss_pred             HHHHhCCCCCChhhHHHHHHHHHcC---------CCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhc--------CCH
Q 036275          133 TAMEKGSYAADISTYNILINIYGRG---------GFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRK--------KLY  195 (271)
Q Consensus       133 ~~m~~~~~~~~~~~~~~li~~~~~~---------g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~--------g~~  195 (271)
                      ++..+.  .|+...+..+...+...         |++++|.+.|++..+.. +-+...|..+..+|...        |++
T Consensus       161 ~~al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g~~  237 (474)
T 4abn_A          161 SGALTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNPKIS  237 (474)
T ss_dssp             HHHHTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCHHHH
T ss_pred             HHHHhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhccccchH
Confidence            999986  47788999999999999         99999999999988763 23578899999999988        999


Q ss_pred             HHHHHHHHHHHHCCCC---CCHHHHHHHHHHHhccCcHHHHHHHHHHHHhcccchh---HHHHHHHhhccccccchhhh
Q 036275          196 RRCLEIFEEMIDAGCY---PDGGTAKVLISACSSEDQIEQVTTLVRTMHKDMKTAL---PIYFNLYGEKGVARSNLGQY  268 (271)
Q Consensus       196 ~~a~~~~~~m~~~~~~---p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~~~~~G~~~~a~~~~  268 (271)
                      ++|...|++..+.. +   -+...+..+..++...|++++|.+.|++..+..+...   ..+..++...|+.++|++.+
T Consensus       238 ~~A~~~~~~al~~~-p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~  315 (474)
T 4abn_A          238 QQALSAYAQAEKVD-RKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESK  315 (474)
T ss_dssp             HHHHHHHHHHHHHC-GGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHhC-CCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            99999999988853 2   4788899999999999999999999999887665543   44556788888888888754

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.56  E-value=4.8e-13  Score=111.00  Aligned_cols=219  Identities=10%  Similarity=0.064  Sum_probs=180.2

Q ss_pred             chHHHHHH--hcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC-hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 036275           44 PNLFVFIF--SIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGN-VAKCEGVINQMHKSGLKPDTFVINSMLNLYG  120 (271)
Q Consensus        44 y~~ll~~~--~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~-~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~  120 (271)
                      |+.+-..+  .|++++|++.|++..+.+ +-+...|+.+..++...|+ +++|+..|++..+.... +...|..+..++.
T Consensus       100 ~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~-~~~a~~~~g~~~~  177 (382)
T 2h6f_A          100 YDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK-NYQVWHHRRVLVE  177 (382)
T ss_dssp             HHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHH
Confidence            66666666  899999999999999886 6689999999999999997 99999999999987533 7788999999999


Q ss_pred             ccCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHh-cCCHHHH-
Q 036275          121 RLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSR-KKLYRRC-  198 (271)
Q Consensus       121 ~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~-~g~~~~a-  198 (271)
                      ..|++++|+..|+++.+.. +.+...|..+..++.+.|++++|++.|+++.+... -+...|+.+..++.. .|..++| 
T Consensus       178 ~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P-~~~~a~~~lg~~l~~l~~~~~eA~  255 (382)
T 2h6f_A          178 WLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDV-RNNSVWNQRYFVISNTTGYNDRAV  255 (382)
T ss_dssp             HHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCSCSHHH
T ss_pred             HccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhcCcchHHH
Confidence            9999999999999999874 55789999999999999999999999999988642 367899999999999 6665777 


Q ss_pred             ----HHHHHHHHHCCCCCCHHHHHHHHHHHhccC--cHHHHHHHHHHHHhcccch---hHHHHHHHhhcc---------c
Q 036275          199 ----LEIFEEMIDAGCYPDGGTAKVLISACSSED--QIEQVTTLVRTMHKDMKTA---LPIYFNLYGEKG---------V  260 (271)
Q Consensus       199 ----~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g--~~~~a~~~~~~~~~~~~~~---~~~~~~~~~~~G---------~  260 (271)
                          ...+++.++.. +-+...|..+...+...|  ++++|.+.+.++ +..+..   ...+..+|.+.|         .
T Consensus       256 ~~~el~~~~~Al~l~-P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~~~~~~~  333 (382)
T 2h6f_A          256 LEREVQYTLEMIKLV-PHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLENQCDNKEDI  333 (382)
T ss_dssp             HHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTCSSHHHH
T ss_pred             HHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhcccccchHHH
Confidence                47888887753 346778888888888888  689999999988 444433   334566787775         2


Q ss_pred             cccchhhh
Q 036275          261 ARSNLGQY  268 (271)
Q Consensus       261 ~~~a~~~~  268 (271)
                      .++|++.|
T Consensus       334 ~~~A~~~~  341 (382)
T 2h6f_A          334 LNKALELC  341 (382)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            36666654

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.55  E-value=2e-12  Score=95.93  Aligned_cols=165  Identities=10%  Similarity=0.018  Sum_probs=144.9

Q ss_pred             chHHHHHH--hcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 036275           44 PNLFVFIF--SIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGR  121 (271)
Q Consensus        44 y~~ll~~~--~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~  121 (271)
                      |..+-..|  .|++++|++.|++..+.+ |-++.+|..+..++.+.|++++|...+.+....... +...+..+...+..
T Consensus         8 y~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~   85 (184)
T 3vtx_A            8 YMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTT-SAEAYYILGSANFM   85 (184)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCch-hHHHHHHHHHHHHH
Confidence            77777778  999999999999999886 668999999999999999999999999999887533 66778888899999


Q ss_pred             cCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 036275          122 LGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEI  201 (271)
Q Consensus       122 ~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~  201 (271)
                      .++++.+.+.+.+..+.. +.+...+..+..+|.+.|++++|++.|++..+.. +-+..+|..+..+|...|++++|.+.
T Consensus        86 ~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~  163 (184)
T 3vtx_A           86 IDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIRAYQSIGLAYEGKGLRDEAVKY  163 (184)
T ss_dssp             TTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhhHHHHHHHHHHHCCCHHHHHHH
Confidence            999999999999988763 5568899999999999999999999999988763 33678899999999999999999999


Q ss_pred             HHHHHHCCCCCCH
Q 036275          202 FEEMIDAGCYPDG  214 (271)
Q Consensus       202 ~~~m~~~~~~p~~  214 (271)
                      |++.++.  .|+.
T Consensus       164 ~~~al~~--~p~~  174 (184)
T 3vtx_A          164 FKKALEK--EEKK  174 (184)
T ss_dssp             HHHHHHT--THHH
T ss_pred             HHHHHhC--CccC
Confidence            9998875  4544

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=99.54  E-value=1.8e-15  Score=125.46  Aligned_cols=184  Identities=12%  Similarity=0.036  Sum_probs=65.9

Q ss_pred             hcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHhHHHHH
Q 036275           52 SIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEV  131 (271)
Q Consensus        52 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~  131 (271)
                      .|++++|.++++++.      .+.+|..++.++.+.|++++|++.|.+      .+|..+|..++..+...|++++|+.+
T Consensus        16 ~~~ld~A~~fae~~~------~~~vWs~La~A~l~~g~~~eAIdsfik------a~D~~~y~~V~~~ae~~g~~EeAi~y   83 (449)
T 1b89_A           16 IGNLDRAYEFAERCN------EPAVWSQLAKAQLQKGMVKEAIDSYIK------ADDPSSYMEVVQAANTSGNWEELVKY   83 (449)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ccCHHHHHHHHHhCC------ChHHHHHHHHHHHHcCCHHHHHHHHHc------CCCHHHHHHHHHHHHhCCCHHHHHHH
Confidence            688999999999882      335999999999999999999999965      35777999999999999999999998


Q ss_pred             HHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 036275          132 LTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCY  211 (271)
Q Consensus       132 ~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~  211 (271)
                      ++...+.  .+++.+.+.++.+|.+.|+++++.++++       .|+..+|..+...|...|++++|...|..+      
T Consensus        84 l~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a------  148 (449)
T 1b89_A           84 LQMARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV------  148 (449)
T ss_dssp             ---------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT------
T ss_pred             HHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh------
Confidence            8877774  4567888999999999999999998885       367789999999999999999999999976      


Q ss_pred             CCHHHHHHHHHHHhccCcHHHHHHHHHHHHhcccchhHHHHHHHhhccccccchhh
Q 036275          212 PDGGTAKVLISACSSEDQIEQVTTLVRTMHKDMKTALPIYFNLYGEKGVARSNLGQ  267 (271)
Q Consensus       212 p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~a~~~  267 (271)
                         ..|..+..++.+.|++++|.+.++++  ..+.+|.....++...|+++.|...
T Consensus       149 ---~n~~~LA~~L~~Lg~yq~AVea~~KA--~~~~~Wk~v~~aCv~~~ef~lA~~~  199 (449)
T 1b89_A          149 ---SNFGRLASTLVHLGEYQAAVDGARKA--NSTRTWKEVCFACVDGKEFRLAQMC  199 (449)
T ss_dssp             ---TCHHHHHHHHHTTTCHHHHHHHHHHH--TCHHHHHHHHHHHHHTTCHHHHHHT
T ss_pred             ---hhHHHHHHHHHHhccHHHHHHHHHHc--CCchhHHHHHHHHHHcCcHHHHHHH
Confidence               36999999999999999999999999  3677788899999999999888543

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=99.53  E-value=5.5e-12  Score=101.71  Aligned_cols=187  Identities=9%  Similarity=0.018  Sum_probs=144.1

Q ss_pred             HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HH-HHHHHHHHHHccCCHhHHHHHHH
Q 036275           56 SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPD-TF-VINSMLNLYGRLGQFEKMEEVLT  133 (271)
Q Consensus        56 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~-~~~~li~~~~~~g~~~~a~~~~~  133 (271)
                      ++|..+|++..+.-.+-+...|..++..+.+.|++++|..+|++..+.  .|+ .. .|..+...+.+.|++++|..+|+
T Consensus        81 ~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~  158 (308)
T 2ond_A           81 DEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFK  158 (308)
T ss_dssp             HHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHH
Confidence            889999998887312446778888888888999999999999998875  343 33 78888888888999999999999


Q ss_pred             HHHhCCCCCChhhHHHHHHHHH-cCCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CC
Q 036275          134 AMEKGSYAADISTYNILINIYG-RGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAG-CY  211 (271)
Q Consensus       134 ~m~~~~~~~~~~~~~~li~~~~-~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~-~~  211 (271)
                      +..+.. +.+...|........ ..|+.++|.++|++..+.. +-+...|..++..+.+.|++++|..+|++..+.. +.
T Consensus       159 ~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~  236 (308)
T 2ond_A          159 KAREDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLP  236 (308)
T ss_dssp             HHHTST-TCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSC
T ss_pred             HHHhcC-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCC
Confidence            888764 344555544443322 3689999999999887652 2357788888888888999999999999988853 35


Q ss_pred             C--CHHHHHHHHHHHhccCcHHHHHHHHHHHHhcccc
Q 036275          212 P--DGGTAKVLISACSSEDQIEQVTTLVRTMHKDMKT  246 (271)
Q Consensus       212 p--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~  246 (271)
                      |  ....|..++......|+.+.|..+++++.+..+.
T Consensus       237 p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~~p~  273 (308)
T 2ond_A          237 PEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFRE  273 (308)
T ss_dssp             GGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTT
T ss_pred             HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccc
Confidence            4  4667888888888889999999999988876654

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=99.53  E-value=7.7e-13  Score=105.99  Aligned_cols=164  Identities=13%  Similarity=0.156  Sum_probs=132.6

Q ss_pred             chHHHHHH--hcCHHHHHHHHHHHHHc-------CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC------CC-CC
Q 036275           44 PNLFVFIF--SIYFSDAHAVFEEMKRL-------GITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKS------GL-KP  107 (271)
Q Consensus        44 y~~ll~~~--~g~~~~A~~~~~~~~~~-------~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~------~~-~~  107 (271)
                      |..+...+  .|++++|..+|+++.+.       ..+.....+..+...+...|++++|...+++..+.      +- +.
T Consensus        30 ~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  109 (311)
T 3nf1_A           30 LHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPA  109 (311)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChH
Confidence            56666666  99999999999998773       33446778889999999999999999999988764      22 22


Q ss_pred             CHHHHHHHHHHHHccCCHhHHHHHHHHHHhC------CCCC-ChhhHHHHHHHHHcCCCHHHHHHHHHhchhC------C
Q 036275          108 DTFVINSMLNLYGRLGQFEKMEEVLTAMEKG------SYAA-DISTYNILINIYGRGGFIEKMEGLFQSLPAK------R  174 (271)
Q Consensus       108 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~------~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~------g  174 (271)
                      ....+..+...+...|++++|.+.+++..+.      +-.| ...++..+...+...|++++|.+.++++...      +
T Consensus       110 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~  189 (311)
T 3nf1_A          110 VAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGP  189 (311)
T ss_dssp             HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCT
T ss_pred             HHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCC
Confidence            3567888999999999999999999988764      2223 4567889999999999999999999988753      2


Q ss_pred             CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 036275          175 LKPD-VVTWTSRLAAYSRKKLYRRCLEIFEEMID  207 (271)
Q Consensus       175 ~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~  207 (271)
                      ..|+ ..++..+...+...|++++|...+++..+
T Consensus       190 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  223 (311)
T 3nf1_A          190 DDPNVAKTKNNLASCYLKQGKFKQAETLYKEILT  223 (311)
T ss_dssp             TCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            1222 45788889999999999999999998875

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.52  E-value=6.4e-13  Score=113.64  Aligned_cols=192  Identities=10%  Similarity=0.025  Sum_probs=166.6

Q ss_pred             chHHHHHH--hcCH-HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 036275           44 PNLFVFIF--SIYF-SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYG  120 (271)
Q Consensus        44 y~~ll~~~--~g~~-~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~  120 (271)
                      |..+-..|  .|++ ++|++.|++..+.+ +.+...|..+..+|.+.|++++|...|++..+.  .|+...+..+...+.
T Consensus       105 ~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~lg~~~~  181 (474)
T 4abn_A          105 LMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCFSGALTH--CKNKVSLQNLSMVLR  181 (474)
T ss_dssp             HHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--CCCHHHHHHHHHHHT
T ss_pred             HHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCHHHHHHHHHHHH
Confidence            55555555  9999 99999999998876 567999999999999999999999999999987  467788999999999


Q ss_pred             cc---------CCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHcC--------CCHHHHHHHHHhchhCCCC--CCHHH
Q 036275          121 RL---------GQFEKMEEVLTAMEKGSYAADISTYNILINIYGRG--------GFIEKMEGLFQSLPAKRLK--PDVVT  181 (271)
Q Consensus       121 ~~---------g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~--------g~~~~a~~~~~~m~~~g~~--~~~~~  181 (271)
                      ..         |++++|++.+++..+.. +.+...|..+..+|...        |++++|.+.|++..+....  -+...
T Consensus       182 ~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~  260 (474)
T 4abn_A          182 QLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDL  260 (474)
T ss_dssp             TCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGCHHH
T ss_pred             HhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCcccCHHH
Confidence            99         99999999999998873 55688999999999998        9999999999999875210  37889


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHH
Q 036275          182 WTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM  240 (271)
Q Consensus       182 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~  240 (271)
                      |..+..+|...|++++|...|++..+.. +-+...+..+..++...|++++|.+.+.++
T Consensus       261 ~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~a~~~l~~~~~~lg~~~eAi~~~~~~  318 (474)
T 4abn_A          261 HLNRATLHKYEESYGEALEGFSQAAALD-PAWPEPQQREQQLLEFLSRLTSLLESKGKT  318 (474)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            9999999999999999999999998764 445677888889999999999998876655

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=99.50  E-value=1.6e-11  Score=98.92  Aligned_cols=193  Identities=10%  Similarity=0.017  Sum_probs=139.2

Q ss_pred             CCHHHHHHHHHHHH-------hcCCh-------HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHh
Q 036275           72 PTMKSHMLLLTAYS-------KTGNV-------AKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEK  137 (271)
Q Consensus        72 ~~~~~~~~li~~~~-------~~~~~-------~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  137 (271)
                      .++..|..++..+.       +.|++       ++|..+|++..+.-.+-+...|..++..+.+.|++++|.++|++..+
T Consensus        48 ~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~  127 (308)
T 2ond_A           48 HHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLA  127 (308)
T ss_dssp             TCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred             CCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Confidence            34455555554443       35765       88999999988731133566788889999999999999999999888


Q ss_pred             CCCCCC-hh-hHHHHHHHHHcCCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHCCCCCCH
Q 036275          138 GSYAAD-IS-TYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYS-RKKLYRRCLEIFEEMIDAGCYPDG  214 (271)
Q Consensus       138 ~~~~~~-~~-~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~-~~g~~~~a~~~~~~m~~~~~~p~~  214 (271)
                      .  .|+ .. +|..++..+.+.|++++|.++|++..+.. +.+...|........ ..|+.++|..+|++..+.. +-+.
T Consensus       128 ~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~-p~~~  203 (308)
T 2ond_A          128 I--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIP  203 (308)
T ss_dssp             S--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH-TTCH
T ss_pred             c--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcH
Confidence            5  443 44 78888899999999999999999988763 234445543333322 3689999999999887752 3467


Q ss_pred             HHHHHHHHHHhccCcHHHHHHHHHHHHhcc--c-----chhHHHHHHHhhccccccchhhh
Q 036275          215 GTAKVLISACSSEDQIEQVTTLVRTMHKDM--K-----TALPIYFNLYGEKGVARSNLGQY  268 (271)
Q Consensus       215 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--~-----~~~~~~~~~~~~~G~~~~a~~~~  268 (271)
                      ..|..++..+.+.|+.++|..+|++..+..  .     ..+..++..+.+.|+.++|...+
T Consensus       204 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~  264 (308)
T 2ond_A          204 EYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVE  264 (308)
T ss_dssp             HHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            788888888889999999999999988742  1     13444566777888888776554

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.50  E-value=4.1e-12  Score=93.67  Aligned_cols=167  Identities=10%  Similarity=0.027  Sum_probs=121.0

Q ss_pred             HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChhhHHHHHHH
Q 036275           74 MKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINI  153 (271)
Q Consensus        74 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~  153 (271)
                      ...|..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|.+.++++.+.. +.+...+..+...
T Consensus         8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~   85 (186)
T 3as5_A            8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLT   85 (186)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHH
Confidence            3456666777777788888888777776653 2356667777777778888888888887777652 4456777777778


Q ss_pred             HHcCCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHH
Q 036275          154 YGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQV  233 (271)
Q Consensus       154 ~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a  233 (271)
                      +...|++++|.+.++++.... +.+...+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|
T Consensus        86 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A  163 (186)
T 3as5_A           86 YVQVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEEA  163 (186)
T ss_dssp             HHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHHH
Confidence            888888888888888776652 3356677777778888888888888888877653 34567777777788888888888


Q ss_pred             HHHHHHHHhcc
Q 036275          234 TTLVRTMHKDM  244 (271)
Q Consensus       234 ~~~~~~~~~~~  244 (271)
                      ...+++..+..
T Consensus       164 ~~~~~~~~~~~  174 (186)
T 3as5_A          164 LPHFKKANELD  174 (186)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHcC
Confidence            88888776543

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.49  E-value=4.1e-11  Score=94.63  Aligned_cols=184  Identities=15%  Similarity=0.069  Sum_probs=162.6

Q ss_pred             hcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc----cC
Q 036275           52 SIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSK----TGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGR----LG  123 (271)
Q Consensus        52 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~----~g  123 (271)
                      .+++++|.+.|++..+.+   ++..+..+...|..    .+++++|+..|++..+.+   +...+..+...|..    .+
T Consensus        55 ~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~  128 (273)
T 1ouv_A           55 EKNLKKAASFYAKACDLN---YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTR  128 (273)
T ss_dssp             CCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCC
T ss_pred             CCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCccc
Confidence            579999999999999876   78889999999999    999999999999999875   77888899999999    99


Q ss_pred             CHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHc----CCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHh----cCCH
Q 036275          124 QFEKMEEVLTAMEKGSYAADISTYNILINIYGR----GGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSR----KKLY  195 (271)
Q Consensus       124 ~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~----~g~~  195 (271)
                      ++++|++.+++..+.+   +...+..+...|..    .+++++|.+.|++..+.+   +...+..+...|..    .+++
T Consensus       129 ~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~  202 (273)
T 1ouv_A          129 DFKKAVEYFTKACDLN---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNF  202 (273)
T ss_dssp             CHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCH
T ss_pred             CHHHHHHHHHHHHhcC---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccH
Confidence            9999999999999875   56778888888988    999999999999988874   57788899999999    9999


Q ss_pred             HHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc----cCcHHHHHHHHHHHHhcccchhHH
Q 036275          196 RRCLEIFEEMIDAGCYPDGGTAKVLISACSS----EDQIEQVTTLVRTMHKDMKTALPI  250 (271)
Q Consensus       196 ~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~  250 (271)
                      ++|...+++..+.+   +...+..+...+..    .++.++|.+.+++..+.++.....
T Consensus       203 ~~A~~~~~~a~~~~---~~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~  258 (273)
T 1ouv_A          203 KEALARYSKACELE---NGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAKGACD  258 (273)
T ss_dssp             HHHHHHHHHHHHTT---CHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCHHHHH
T ss_pred             HHHHHHHHHHHhCC---CHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcCCHHHHH
Confidence            99999999998875   36677888888888    999999999999998887655443

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.48  E-value=9.4e-12  Score=97.94  Aligned_cols=203  Identities=8%  Similarity=-0.041  Sum_probs=161.3

Q ss_pred             chHHHHHH--hcCHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 036275           44 PNLFVFIF--SIYFSDAHAVFEEMKRLGITP--TMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLY  119 (271)
Q Consensus        44 y~~ll~~~--~g~~~~A~~~~~~~~~~~~~~--~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~  119 (271)
                      |..+...|  .|++++|++.|++..+....+  ....|..+...+...|++++|+..|++..+... .+...+..+...+
T Consensus        40 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~  118 (272)
T 3u4t_A           40 YNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDT-TRLDMYGQIGSYF  118 (272)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCc-ccHHHHHHHHHHH
Confidence            56666666  999999999999998843111  244588999999999999999999999988753 3567899999999


Q ss_pred             HccCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCC---HH
Q 036275          120 GRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKL---YR  196 (271)
Q Consensus       120 ~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~---~~  196 (271)
                      ...|++++|.+.+++..+.. +.+...+..+...+...+++++|.+.|+++.+.. +.+...+..+...+...|+   ++
T Consensus       119 ~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~  196 (272)
T 3u4t_A          119 YNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYNKEYVKADSSFVKVLELK-PNIYIGYLWRARANAAQDPDTKQG  196 (272)
T ss_dssp             HHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSC
T ss_pred             HHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCcchhhH
Confidence            99999999999999998872 4567788888734444569999999999988763 2246788888888888888   88


Q ss_pred             HHHHHHHHHHHCC-CCCC------HHHHHHHHHHHhccCcHHHHHHHHHHHHhcccchhH
Q 036275          197 RCLEIFEEMIDAG-CYPD------GGTAKVLISACSSEDQIEQVTTLVRTMHKDMKTALP  249 (271)
Q Consensus       197 ~a~~~~~~m~~~~-~~p~------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~  249 (271)
                      +|...+++..+.. -.|+      ..+|..+...+...|++++|.+.+++..+..+....
T Consensus       197 ~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~  256 (272)
T 3u4t_A          197 LAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNKK  256 (272)
T ss_dssp             TTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred             HHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccHHH
Confidence            8888888876531 1233      257788888999999999999999999887665443

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.47  E-value=7.9e-12  Score=92.13  Aligned_cols=161  Identities=12%  Similarity=0.078  Sum_probs=139.5

Q ss_pred             chHHHHHH--hcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 036275           44 PNLFVFIF--SIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGR  121 (271)
Q Consensus        44 y~~ll~~~--~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~  121 (271)
                      |..+...+  .|++++|.+.|+++.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+...+..
T Consensus        11 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~   88 (186)
T 3as5_A           11 YRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTYVQ   88 (186)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHH
Confidence            44455555  999999999999987664 5578899999999999999999999999998774 3467888999999999


Q ss_pred             cCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 036275          122 LGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEI  201 (271)
Q Consensus       122 ~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~  201 (271)
                      .|++++|.+.++++.+.. +.+...+..+...+...|++++|.+.++++.... +.+..++..+...+...|++++|...
T Consensus        89 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~  166 (186)
T 3as5_A           89 VQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEEALPH  166 (186)
T ss_dssp             HTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             hcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHHHHHH
Confidence            999999999999998863 5678889999999999999999999999988763 34678899999999999999999999


Q ss_pred             HHHHHHC
Q 036275          202 FEEMIDA  208 (271)
Q Consensus       202 ~~~m~~~  208 (271)
                      +++..+.
T Consensus       167 ~~~~~~~  173 (186)
T 3as5_A          167 FKKANEL  173 (186)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHc
Confidence            9998764

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=99.45  E-value=2.2e-12  Score=103.32  Aligned_cols=172  Identities=15%  Similarity=0.162  Sum_probs=138.9

Q ss_pred             CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC-------CCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhC-----
Q 036275           71 TPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKS-------GLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKG-----  138 (271)
Q Consensus        71 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-------~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-----  138 (271)
                      +.+..++..+...+...|++++|..+++++.+.       ..+.....+..+...+...|++++|...+++..+.     
T Consensus        24 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  103 (311)
T 3nf1_A           24 PARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTL  103 (311)
T ss_dssp             CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHh
Confidence            345778889999999999999999999998873       22334567888999999999999999999988754     


Q ss_pred             -CC-CCChhhHHHHHHHHHcCCCHHHHHHHHHhchhC------CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-
Q 036275          139 -SY-AADISTYNILINIYGRGGFIEKMEGLFQSLPAK------RLKP-DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDA-  208 (271)
Q Consensus       139 -~~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~------g~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-  208 (271)
                       +- +....++..+...|...|++++|.+.++++...      +-.| ...++..+...+...|++++|...+++..+. 
T Consensus       104 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~  183 (311)
T 3nf1_A          104 GKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIY  183 (311)
T ss_dssp             CTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred             CCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence             22 234678889999999999999999999988754      2222 3457888899999999999999999998763 


Q ss_pred             -----CCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHHHh
Q 036275          209 -----GCYP-DGGTAKVLISACSSEDQIEQVTTLVRTMHK  242 (271)
Q Consensus       209 -----~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~  242 (271)
                           +..| ...++..+...+...|++++|..+++++.+
T Consensus       184 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  223 (311)
T 3nf1_A          184 QTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILT  223 (311)
T ss_dssp             HHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence                 2123 345678888899999999999999999875

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.44  E-value=3.4e-11  Score=99.84  Aligned_cols=197  Identities=5%  Similarity=0.005  Sum_probs=163.8

Q ss_pred             chHHHHHH--hcC-HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 036275           44 PNLFVFIF--SIY-FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYG  120 (271)
Q Consensus        44 y~~ll~~~--~g~-~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~  120 (271)
                      |+.+-.++  .|+ +++|++.|++..+.+ +-+...|..+..++...|++++|+..|+++.+... -+...|..+..++.
T Consensus       134 ~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP-~~~~a~~~lg~~~~  211 (382)
T 2h6f_A          134 WHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDA-KNYHAWQHRQWVIQ  211 (382)
T ss_dssp             HHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCT-TCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCc-cCHHHHHHHHHHHH
Confidence            66666666  886 999999999999987 66899999999999999999999999999998753 37788999999999


Q ss_pred             ccCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHc-CCCHHHH-----HHHHHhchhCCCCCCHHHHHHHHHHHHhcC-
Q 036275          121 RLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGR-GGFIEKM-----EGLFQSLPAKRLKPDVVTWTSRLAAYSRKK-  193 (271)
Q Consensus       121 ~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~-~g~~~~a-----~~~~~~m~~~g~~~~~~~~~~li~~~~~~g-  193 (271)
                      ..|++++|+..++++.+.. +.+...|+.+..++.+ .|..++|     ++.|++..... +-+...|..+...+...| 
T Consensus       212 ~~g~~~eAl~~~~~al~l~-P~~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~-P~~~~a~~~l~~ll~~~g~  289 (382)
T 2h6f_A          212 EFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLV-PHNESAWNYLKGILQDRGL  289 (382)
T ss_dssp             HHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTTTCG
T ss_pred             HcCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHccCc
Confidence            9999999999999999874 5578999999999999 6665777     58888877653 225678988888888888 


Q ss_pred             -CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC---------cHHHHHHHHHHH-Hhcccc
Q 036275          194 -LYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSED---------QIEQVTTLVRTM-HKDMKT  246 (271)
Q Consensus       194 -~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g---------~~~~a~~~~~~~-~~~~~~  246 (271)
                       ++++|.+.+.++ +. .+.+...+..+...+.+.|         ..++|.++++++ .+.++.
T Consensus       290 ~~~~~a~~~~~~~-~~-~p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~~DP~  351 (382)
T 2h6f_A          290 SKYPNLLNQLLDL-QP-SHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKEKDTI  351 (382)
T ss_dssp             GGCHHHHHHHHHH-TT-TCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHTTCGG
T ss_pred             cchHHHHHHHHHh-cc-CCCCHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHhCch
Confidence             689999999888 43 2456778888888888764         358999999999 665544

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=99.43  E-value=1.8e-12  Score=102.18  Aligned_cols=136  Identities=15%  Similarity=0.197  Sum_probs=90.2

Q ss_pred             CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC------CCCC-CHHHHHHHHHHHHccCCHhHHHHHHHHHHhC------
Q 036275           72 PTMKSHMLLLTAYSKTGNVAKCEGVINQMHKS------GLKP-DTFVINSMLNLYGRLGQFEKMEEVLTAMEKG------  138 (271)
Q Consensus        72 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~------~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~------  138 (271)
                      ....++..+...+...|++++|+..+++..+.      +-.| ...++..+...+...|++++|.+.+++..+.      
T Consensus        41 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~  120 (283)
T 3edt_B           41 DVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLG  120 (283)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcC
Confidence            34666777777777778888887777776643      1122 2345777777777778888877777776543      


Q ss_pred             C-CCCChhhHHHHHHHHHcCCCHHHHHHHHHhchhC------CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 036275          139 S-YAADISTYNILINIYGRGGFIEKMEGLFQSLPAK------RLKP-DVVTWTSRLAAYSRKKLYRRCLEIFEEMID  207 (271)
Q Consensus       139 ~-~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~------g~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  207 (271)
                      . .+....++..+...|...|++++|.+.+++....      +-.| ...++..+...+...|++++|...+++..+
T Consensus       121 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~  197 (283)
T 3edt_B          121 KFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILT  197 (283)
T ss_dssp             TTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             CCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            1 1223566777777777888888887777776543      1122 234667777777777888887777777654

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=99.43  E-value=4e-11  Score=92.05  Aligned_cols=186  Identities=8%  Similarity=-0.000  Sum_probs=136.9

Q ss_pred             hcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHhHHHHH
Q 036275           52 SIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEV  131 (271)
Q Consensus        52 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~  131 (271)
                      .|++++|++.|++..+..-+++...+..+..++...|++++|+..+++..+.... +...+..+...+...|++++|.+.
T Consensus        20 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~   98 (228)
T 4i17_A           20 AKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYN-LANAYIGKSAAYRDMKNNQEYIAT   98 (228)
T ss_dssp             TTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCS-HHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             ccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcc-hHHHHHHHHHHHHHcccHHHHHHH
Confidence            8999999999998888763377788888888888999999999999888877422 556788888889999999999999


Q ss_pred             HHHHHhCCCCCCh-------hhHHHHHHHHHcCCCHHHHHHHHHhchhCCCCCC---HHHHHHHHHHHHhcCCHHHHHHH
Q 036275          132 LTAMEKGSYAADI-------STYNILINIYGRGGFIEKMEGLFQSLPAKRLKPD---VVTWTSRLAAYSRKKLYRRCLEI  201 (271)
Q Consensus       132 ~~~m~~~~~~~~~-------~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~---~~~~~~li~~~~~~g~~~~a~~~  201 (271)
                      +++..+.. +.+.       ..|..+...+...|++++|.+.|++..+.  .|+   ...|..+...+...|+     ..
T Consensus        99 ~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~l~~~~~~~~~-----~~  170 (228)
T 4i17_A           99 LTEGIKAV-PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV--TSKKWKTDALYSLGVLFYNNGA-----DV  170 (228)
T ss_dssp             HHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--SCHHHHHHHHHHHHHHHHHHHH-----HH
T ss_pred             HHHHHHHC-CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc--CCCcccHHHHHHHHHHHHHHHH-----HH
Confidence            98888753 3344       45777888888899999999999988775  454   4566777777765443     34


Q ss_pred             HHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhcccchhH
Q 036275          202 FEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKDMKTALP  249 (271)
Q Consensus       202 ~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~  249 (271)
                      ++++...+ ..+...|.....  ...+.+++|...+++..+..+....
T Consensus       171 ~~~a~~~~-~~~~~~~~~~~~--~~~~~~~~A~~~~~~a~~l~p~~~~  215 (228)
T 4i17_A          171 LRKATPLA-SSNKEKYASEKA--KADAAFKKAVDYLGEAVTLSPNRTE  215 (228)
T ss_dssp             HHHHGGGT-TTCHHHHHHHHH--HHHHHHHHHHHHHHHHHHHCTTCHH
T ss_pred             HHHHHhcc-cCCHHHHHHHHH--HHHHHHHHHHHHHHHHhhcCCCCHH
Confidence            45555443 334444544432  3456789999999999887665443

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.43  E-value=8.4e-12  Score=111.44  Aligned_cols=166  Identities=5%  Similarity=-0.071  Sum_probs=112.4

Q ss_pred             CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChhhHHHHHH
Q 036275           73 TMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILIN  152 (271)
Q Consensus        73 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~  152 (271)
                      ++.+|+.+...+.+.|++++|++.|++..+... -+...+..+..+|.+.|++++|++.|++..+.. +.+...|..+..
T Consensus         8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P-~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~nLg~   85 (723)
T 4gyw_A            8 HADSLNNLANIKREQGNIEEAVRLYRKALEVFP-EFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMGN   85 (723)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence            456677777777777777777777777766532 245667777777777777777777777776652 334667777777


Q ss_pred             HHHcCCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHH
Q 036275          153 IYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQ  232 (271)
Q Consensus       153 ~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~  232 (271)
                      +|...|++++|++.|++..+.. +-+..+|..+..+|...|++++|.+.|++.++.. +-+...+..+..++...|++++
T Consensus        86 ~l~~~g~~~~A~~~~~kAl~l~-P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~-P~~~~a~~~L~~~l~~~g~~~~  163 (723)
T 4gyw_A           86 TLKEMQDVQGALQCYTRAIQIN-PAFADAHSNLASIHKDSGNIPEAIASYRTALKLK-PDFPDAYCNLAHCLQIVCDWTD  163 (723)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCCTT
T ss_pred             HHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHhhhhhHHHhcccHHH
Confidence            7777777777777777766542 1245667777777777777777777777766643 2345667777777777777777


Q ss_pred             HHHHHHHHHh
Q 036275          233 VTTLVRTMHK  242 (271)
Q Consensus       233 a~~~~~~~~~  242 (271)
                      |.+.+++..+
T Consensus       164 A~~~~~kal~  173 (723)
T 4gyw_A          164 YDERMKKLVS  173 (723)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            7777666543

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.40  E-value=2.4e-11  Score=108.48  Aligned_cols=159  Identities=11%  Similarity=0.012  Sum_probs=141.7

Q ss_pred             chHHHHHH--hcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 036275           44 PNLFVFIF--SIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGR  121 (271)
Q Consensus        44 y~~ll~~~--~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~  121 (271)
                      |+.+-..|  .|++++|++.|++..+.. +-+..+|..+..+|.+.|++++|++.|++..+... -+...|..+..++..
T Consensus        12 l~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P-~~~~a~~nLg~~l~~   89 (723)
T 4gyw_A           12 LNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISP-TFADAYSNMGNTLKE   89 (723)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHH
Confidence            77777777  999999999999999886 55789999999999999999999999999998753 267889999999999


Q ss_pred             cCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHhchhCCCCC-CHHHHHHHHHHHHhcCCHHHHHH
Q 036275          122 LGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP-DVVTWTSRLAAYSRKKLYRRCLE  200 (271)
Q Consensus       122 ~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~-~~~~~~~li~~~~~~g~~~~a~~  200 (271)
                      .|++++|++.|++..+.. +-+...|+.+..+|...|++++|++.|++..+.  .| +...+..+..++...|++++|.+
T Consensus        90 ~g~~~~A~~~~~kAl~l~-P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l--~P~~~~a~~~L~~~l~~~g~~~~A~~  166 (723)
T 4gyw_A           90 MQDVQGALQCYTRAIQIN-PAFADAHSNLASIHKDSGNIPEAIASYRTALKL--KPDFPDAYCNLAHCLQIVCDWTDYDE  166 (723)
T ss_dssp             TTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCCTTHHH
T ss_pred             cCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHhhhhhHHHhcccHHHHHH
Confidence            999999999999998863 456889999999999999999999999998876  34 47889999999999999999998


Q ss_pred             HHHHHHH
Q 036275          201 IFEEMID  207 (271)
Q Consensus       201 ~~~~m~~  207 (271)
                      .+++..+
T Consensus       167 ~~~kal~  173 (723)
T 4gyw_A          167 RMKKLVS  173 (723)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            8887654

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=99.37  E-value=6.3e-12  Score=104.96  Aligned_cols=216  Identities=12%  Similarity=-0.006  Sum_probs=151.8

Q ss_pred             hcCHHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHhcCChHHHHHHHHHHHHC----CC-CCCHHHHHHHHHHHHcc
Q 036275           52 SIYFSDAHAVFEEMKRLGITPTM----KSHMLLLTAYSKTGNVAKCEGVINQMHKS----GL-KPDTFVINSMLNLYGRL  122 (271)
Q Consensus        52 ~g~~~~A~~~~~~~~~~~~~~~~----~~~~~li~~~~~~~~~~~a~~~~~~m~~~----~~-~~~~~~~~~li~~~~~~  122 (271)
                      .|++++|++.|+++.+.+ +.+.    ..|..+...+...|++++|+..+++..+.    +. ......+..+...|...
T Consensus        61 ~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~  139 (411)
T 4a1s_A           61 AGDCRAGVAFFQAAIQAG-TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVM  139 (411)
T ss_dssp             TTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred             hCcHHHHHHHHHHHHHhc-ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHC
Confidence            899999999999988874 3343    46788888888999999999988877653    21 22345677888888899


Q ss_pred             CCHhHHHHHHHHHHhC----CC-CCChhhHHHHHHHHHcCCC-----------------HHHHHHHHHhchhC----CCC
Q 036275          123 GQFEKMEEVLTAMEKG----SY-AADISTYNILINIYGRGGF-----------------IEKMEGLFQSLPAK----RLK  176 (271)
Q Consensus       123 g~~~~a~~~~~~m~~~----~~-~~~~~~~~~li~~~~~~g~-----------------~~~a~~~~~~m~~~----g~~  176 (271)
                      |++++|...+++..+.    +- +....++..+...|...|+                 +++|.+.+++....    +-.
T Consensus       140 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~  219 (411)
T 4a1s_A          140 GRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDR  219 (411)
T ss_dssp             TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCH
T ss_pred             CCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCH
Confidence            9999999888876643    11 1234577788888888888                 88888888775432    111


Q ss_pred             C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHhccCcHHHHHHHHHHHHhccc-----
Q 036275          177 P-DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGC-YPD----GGTAKVLISACSSEDQIEQVTTLVRTMHKDMK-----  245 (271)
Q Consensus       177 ~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~-~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-----  245 (271)
                      + ...++..+...+...|++++|...+++..+..- .++    ..++..+...+...|++++|...+++..+...     
T Consensus       220 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  299 (411)
T 4a1s_A          220 GAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGER  299 (411)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCH
Confidence            1 124677778888888888888888887764210 112    23667777788888888888888887754322     


Q ss_pred             ----chhHHHHHHHhhccccccchhhh
Q 036275          246 ----TALPIYFNLYGEKGVARSNLGQY  268 (271)
Q Consensus       246 ----~~~~~~~~~~~~~G~~~~a~~~~  268 (271)
                          .....+..+|...|+.++|++.|
T Consensus       300 ~~~~~~~~~la~~~~~~g~~~~A~~~~  326 (411)
T 4a1s_A          300 EVEAQSCYSLGNTYTLLHEFNTAIEYH  326 (411)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence                12333556678888888887665

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=99.36  E-value=8.5e-12  Score=104.19  Aligned_cols=226  Identities=11%  Similarity=-0.070  Sum_probs=170.0

Q ss_pred             chHHHHHH--hcCHHHHHHHHHHHHHc----C-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC----CC-CCCHHH
Q 036275           44 PNLFVFIF--SIYFSDAHAVFEEMKRL----G-ITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKS----GL-KPDTFV  111 (271)
Q Consensus        44 y~~ll~~~--~g~~~~A~~~~~~~~~~----~-~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----~~-~~~~~~  111 (271)
                      |..+...|  .|++++|.+.|++..+.    + .+.....+..+...|...|++++|...+++..+.    +- .....+
T Consensus        89 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~  168 (411)
T 4a1s_A           89 YSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRA  168 (411)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHH
Confidence            44555555  99999999999988654    1 1335677888999999999999999999887654    11 223456


Q ss_pred             HHHHHHHHHccCC-----------------HhHHHHHHHHHHhC----CCCC-ChhhHHHHHHHHHcCCCHHHHHHHHHh
Q 036275          112 INSMLNLYGRLGQ-----------------FEKMEEVLTAMEKG----SYAA-DISTYNILINIYGRGGFIEKMEGLFQS  169 (271)
Q Consensus       112 ~~~li~~~~~~g~-----------------~~~a~~~~~~m~~~----~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~  169 (271)
                      +..+...|...|+                 +++|.+.+++..+.    +..+ ...++..+...|...|++++|.+.+++
T Consensus       169 ~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  248 (411)
T 4a1s_A          169 LYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQE  248 (411)
T ss_dssp             HHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence            8888999999999                 99999998876542    2112 345788899999999999999999998


Q ss_pred             chhCCC-CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC----C-CCHHHHHHHHHHHhccCcHHHHHHHHHH
Q 036275          170 LPAKRL-KPD----VVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGC----Y-PDGGTAKVLISACSSEDQIEQVTTLVRT  239 (271)
Q Consensus       170 m~~~g~-~~~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~----~-p~~~~~~~l~~~~~~~g~~~~a~~~~~~  239 (271)
                      ...... .++    ..++..+...+...|++++|...+++..+..-    . ....++..+...+...|++++|..++++
T Consensus       249 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  328 (411)
T 4a1s_A          249 RLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNR  328 (411)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            765310 012    23788889999999999999999998765311    0 1146778888899999999999999998


Q ss_pred             HHhcccc---------hhHHHHHHHhhccccccchhhhh
Q 036275          240 MHKDMKT---------ALPIYFNLYGEKGVARSNLGQYI  269 (271)
Q Consensus       240 ~~~~~~~---------~~~~~~~~~~~~G~~~~a~~~~~  269 (271)
                      ..+....         ....+..+|.+.|+.++|++.|.
T Consensus       329 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~  367 (411)
T 4a1s_A          329 HLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAE  367 (411)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence            8653221         33445677999999999988763

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=99.35  E-value=4.2e-10  Score=86.28  Aligned_cols=155  Identities=6%  Similarity=-0.083  Sum_probs=110.2

Q ss_pred             CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChhhHHHHH
Q 036275           72 PTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILI  151 (271)
Q Consensus        72 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li  151 (271)
                      .|+..+......+...|++++|+..|++..+...+++...+..+..++...|++++|++.+++..+.. +.+...+..+.
T Consensus         5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~   83 (228)
T 4i17_A            5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYIGKS   83 (228)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHHHHH
Confidence            35677777777888888888888888877776543566666667777888888888888888877753 33566777788


Q ss_pred             HHHHcCCCHHHHHHHHHhchhCCCCCCH-------HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHH
Q 036275          152 NIYGRGGFIEKMEGLFQSLPAKRLKPDV-------VTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPD---GGTAKVLI  221 (271)
Q Consensus       152 ~~~~~~g~~~~a~~~~~~m~~~g~~~~~-------~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~---~~~~~~l~  221 (271)
                      .+|...|++++|.+.+++..+.. +.+.       ..|..+...+...|++++|...+++..+.  .|+   ...+..+.
T Consensus        84 ~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~l~  160 (228)
T 4i17_A           84 AAYRDMKNNQEYIATLTEGIKAV-PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV--TSKKWKTDALYSLG  160 (228)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--SCHHHHHHHHHHHH
T ss_pred             HHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc--CCCcccHHHHHHHH
Confidence            88888888888888888777642 1133       45777777778888888888888887765  344   45566666


Q ss_pred             HHHhccCcH
Q 036275          222 SACSSEDQI  230 (271)
Q Consensus       222 ~~~~~~g~~  230 (271)
                      .++...|+.
T Consensus       161 ~~~~~~~~~  169 (228)
T 4i17_A          161 VLFYNNGAD  169 (228)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            666655554

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=99.35  E-value=3.4e-11  Score=99.92  Aligned_cols=218  Identities=9%  Similarity=-0.095  Sum_probs=163.9

Q ss_pred             hcCHHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCC--C----CCCHHHHHHHHHHHH
Q 036275           52 SIYFSDAHAVFEEMKRL----GITP-TMKSHMLLLTAYSKTGNVAKCEGVINQMHKSG--L----KPDTFVINSMLNLYG  120 (271)
Q Consensus        52 ~g~~~~A~~~~~~~~~~----~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~--~----~~~~~~~~~li~~~~  120 (271)
                      .|++++|.+.|++..+.    +-++ ...+|..+...|...|++++|+..+++..+..  .    .....+++.+...|.
T Consensus       116 ~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~  195 (383)
T 3ulq_A          116 QREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFL  195 (383)
T ss_dssp             TTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHH
T ss_pred             hcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHH
Confidence            89999999999999764    1111 35678899999999999999999998876531  1    112356888999999


Q ss_pred             ccCCHhHHHHHHHHHHhC----CCCC-ChhhHHHHHHHHHcCCCHHHHHHHHHhchhC----CC-CCCHHHHHHHHHHHH
Q 036275          121 RLGQFEKMEEVLTAMEKG----SYAA-DISTYNILINIYGRGGFIEKMEGLFQSLPAK----RL-KPDVVTWTSRLAAYS  190 (271)
Q Consensus       121 ~~g~~~~a~~~~~~m~~~----~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~-~~~~~~~~~li~~~~  190 (271)
                      ..|++++|.+.+++..+.    +-++ ...++..+...|...|++++|.+.+++....    +. +....++..+...+.
T Consensus       196 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~  275 (383)
T 3ulq_A          196 DLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHY  275 (383)
T ss_dssp             HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHH
T ss_pred             HhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHH
Confidence            999999999999887643    1111 1357889999999999999999999988762    22 223567899999999


Q ss_pred             hcCCHHHHHHHHHHHHHC----CCCCCHHHHHHHHHHHhccCc---HHHHHHHHHHHHhcc--cchhHHHHHHHhhcccc
Q 036275          191 RKKLYRRCLEIFEEMIDA----GCYPDGGTAKVLISACSSEDQ---IEQVTTLVRTMHKDM--KTALPIYFNLYGEKGVA  261 (271)
Q Consensus       191 ~~g~~~~a~~~~~~m~~~----~~~p~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~--~~~~~~~~~~~~~~G~~  261 (271)
                      ..|++++|...+++..+.    +-+.....+..+...+...|+   .++|..++++.....  ......+..+|.+.|+.
T Consensus       276 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~y~~~g~~  355 (383)
T 3ulq_A          276 KLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKMLYADLEDFAIDVAKYYHERKNF  355 (383)
T ss_dssp             HTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred             HCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHCCCH
Confidence            999999999999987652    111222345667777888998   778888877763211  12234466789999999


Q ss_pred             ccchhhhh
Q 036275          262 RSNLGQYI  269 (271)
Q Consensus       262 ~~a~~~~~  269 (271)
                      ++|++.|.
T Consensus       356 ~~A~~~~~  363 (383)
T 3ulq_A          356 QKASAYFL  363 (383)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99988763

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=99.34  E-value=4.2e-10  Score=97.46  Aligned_cols=207  Identities=10%  Similarity=0.021  Sum_probs=151.0

Q ss_pred             HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh-------cCChH-------HHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 036275           56 SDAHAVFEEMKRLGITPTMKSHMLLLTAYSK-------TGNVA-------KCEGVINQMHKSGLKPDTFVINSMLNLYGR  121 (271)
Q Consensus        56 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~-------~~~~~-------~a~~~~~~m~~~~~~~~~~~~~~li~~~~~  121 (271)
                      ++|..+|++..... |.++..|...+..+.+       .|+++       +|..+|++..+.-.+-+...|..++..+.+
T Consensus       255 ~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~  333 (530)
T 2ooe_A          255 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES  333 (530)
T ss_dssp             HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence            36777888877764 5678888888888775       68876       888999888863223457788888888889


Q ss_pred             cCCHhHHHHHHHHHHhCCCCCC-h-hhHHHHHHHHHcCCCHHHHHHHHHhchhCCCCCCHHHHHHHHH-HHHhcCCHHHH
Q 036275          122 LGQFEKMEEVLTAMEKGSYAAD-I-STYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLA-AYSRKKLYRRC  198 (271)
Q Consensus       122 ~g~~~~a~~~~~~m~~~~~~~~-~-~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~-~~~~~g~~~~a  198 (271)
                      .|++++|..+|+++.+.  +|+ . ..|..++..+.+.|++++|.++|++..+... .+...|..... .+...|+.++|
T Consensus       334 ~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~-~~~~~~~~~a~~~~~~~~~~~~A  410 (530)
T 2ooe_A          334 RMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDAR-TRHHVYVTAALMEYYCSKDKSVA  410 (530)
T ss_dssp             TTCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTT-CCTHHHHHHHHHHHHHTCCHHHH
T ss_pred             cCCHHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccC-CchHHHHHHHHHHHHHcCChhHH
Confidence            99999999999998885  443 3 4788888888889999999999998877521 12233332222 23468899999


Q ss_pred             HHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhcccc-------hhHHHHHHHhhccccccchhh
Q 036275          199 LEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKDMKT-------ALPIYFNLYGEKGVARSNLGQ  267 (271)
Q Consensus       199 ~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-------~~~~~~~~~~~~G~~~~a~~~  267 (271)
                      ..+|+...+.. +-+...+..++..+.+.|+.++|..+|++....++.       .+..++....+.|+.+.+...
T Consensus       411 ~~~~e~al~~~-p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~  485 (530)
T 2ooe_A          411 FKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKV  485 (530)
T ss_dssp             HHHHHHHHHHH-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHH
T ss_pred             HHHHHHHHHHC-CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence            99999887752 335778888888888899999999999998775422       233445556667877766543

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=99.33  E-value=1e-10  Score=93.04  Aligned_cols=204  Identities=10%  Similarity=-0.050  Sum_probs=149.2

Q ss_pred             HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHccCCHhHHHHHHHHHH
Q 036275           58 AHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGL-KPDTFVINSMLNLYGRLGQFEKMEEVLTAME  136 (271)
Q Consensus        58 A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~  136 (271)
                      |+..|+++.+.+ +++..++..+..++...|++++|++++.+.+..+. .-+...+..++..+.+.|+.+.|.+.++.|.
T Consensus        85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~  163 (310)
T 3mv2_B           85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT  163 (310)
T ss_dssp             CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            677777776655 56666777888999999999999999999877654 2356678888999999999999999999998


Q ss_pred             hCCCCC-----ChhhHHHHHHH--HHc--CCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 036275          137 KGSYAA-----DISTYNILINI--YGR--GGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMID  207 (271)
Q Consensus       137 ~~~~~~-----~~~~~~~li~~--~~~--~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  207 (271)
                      +.  .|     +..+...|+.+  ...  .++.++|..+|+++...  .|+..+-..++.++.+.|++++|.+.++.+.+
T Consensus       164 ~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~  239 (310)
T 3mv2_B          164 NA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLS  239 (310)
T ss_dssp             HH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHS
T ss_pred             hc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            86  56     24555556655  332  34899999999998765  45544445555588999999999999987654


Q ss_pred             C-----CC----CCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhcccchhHHHHHHHhhccccccchhhhh
Q 036275          208 A-----GC----YPDGGTAKVLISACSSEDQIEQVTTLVRTMHKDMKTALPIYFNLYGEKGVARSNLGQYI  269 (271)
Q Consensus       208 ~-----~~----~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~a~~~~~  269 (271)
                      .     +.    +-|..+...+|......|+  +|.+++.++.+.. +..+.+.+.-.+...++++...|.
T Consensus       240 ~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~-P~hp~i~d~~~k~~~Fd~~~~ky~  307 (310)
T 3mv2_B          240 DYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLD-HEHAFIKHHQEIDAKFDELVRKYD  307 (310)
T ss_dssp             HHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTT-CCCHHHHHHHHHHHHHHHHHHTCC
T ss_pred             hcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhC-CCChHHHHHHHHHHHHHHHHHHhc
Confidence            2     11    3356667677766666776  8889999988776 344455666666666666666553

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=99.30  E-value=8.9e-11  Score=93.90  Aligned_cols=202  Identities=9%  Similarity=-0.013  Sum_probs=147.6

Q ss_pred             chHHHHHH--hcCHHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCC---CCC--HHH
Q 036275           44 PNLFVFIF--SIYFSDAHAVFEEMKRL----GITP-TMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGL---KPD--TFV  111 (271)
Q Consensus        44 y~~ll~~~--~g~~~~A~~~~~~~~~~----~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~---~~~--~~~  111 (271)
                      |+.....|  .|++++|.+.|.+..+.    |-++ ...+|+.+..+|.+.|++++|+..|++..+...   .+.  ..+
T Consensus        40 ~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~  119 (292)
T 1qqe_A           40 CVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANF  119 (292)
T ss_dssp             HHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence            55556667  99999999999988654    3222 257899999999999999999999988765411   111  357


Q ss_pred             HHHHHHHHHcc-CCHhHHHHHHHHHHhCC----CCCC-hhhHHHHHHHHHcCCCHHHHHHHHHhchhCCCCCCH------
Q 036275          112 INSMLNLYGRL-GQFEKMEEVLTAMEKGS----YAAD-ISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDV------  179 (271)
Q Consensus       112 ~~~li~~~~~~-g~~~~a~~~~~~m~~~~----~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~------  179 (271)
                      ++.+...|... |++++|+..|++..+..    -.+. ..++..+...+.+.|++++|...|++..........      
T Consensus       120 ~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~  199 (292)
T 1qqe_A          120 KFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLK  199 (292)
T ss_dssp             HHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHH
T ss_pred             HHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHH
Confidence            88899999996 99999999999887631    1011 356888999999999999999999998875332221      


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH------HHHHHHHHHHh--ccCcHHHHHHHHHHHHhcccch
Q 036275          180 VTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDG------GTAKVLISACS--SEDQIEQVTTLVRTMHKDMKTA  247 (271)
Q Consensus       180 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~------~~~~~l~~~~~--~~g~~~~a~~~~~~~~~~~~~~  247 (271)
                      .+|..+..++...|++++|...+++..+.  .|+.      ..+..++.++.  ..+++++|...|+++.+..+..
T Consensus       200 ~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~~~  273 (292)
T 1qqe_A          200 DYFLKKGLCQLAATDAVAAARTLQEGQSE--DPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWK  273 (292)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHGGGCC-----------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHHHH
Confidence            25777888899999999999999998763  2332      13445566664  5677888888887776554433

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=99.30  E-value=4.8e-09  Score=89.93  Aligned_cols=177  Identities=11%  Similarity=0.008  Sum_probs=109.8

Q ss_pred             cCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc----cCC
Q 036275           53 IYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSK----TGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGR----LGQ  124 (271)
Q Consensus        53 g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~----~g~  124 (271)
                      +++++|.+.|++..+.|   ++..+..|...|..    .++.++|...|++..+.|   +...+..|...|..    .++
T Consensus        57 ~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~  130 (490)
T 2xm6_A           57 KDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LPQAQQNLGVMYHEGNGVKVD  130 (490)
T ss_dssp             CCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCC
T ss_pred             cCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCC
Confidence            56777777777776654   45666666666766    677777777777776654   44555556666665    567


Q ss_pred             HhHHHHHHHHHHhCCCCCChhhHHHHHHHHHc----CCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHh----cCCHH
Q 036275          125 FEKMEEVLTAMEKGSYAADISTYNILINIYGR----GGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSR----KKLYR  196 (271)
Q Consensus       125 ~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~----~g~~~  196 (271)
                      +++|.+.|++..+.|   +...+..|...|..    .++.++|.+.|++..+.|   +...+..+...|..    .++.+
T Consensus       131 ~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~  204 (490)
T 2xm6_A          131 KAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWSCNQLGYMYSRGLGVERNDA  204 (490)
T ss_dssp             HHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHH
T ss_pred             HHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCCCcCHH
Confidence            777777777766654   45555666666665    566777777776666553   45566666666665    56666


Q ss_pred             HHHHHHHHHHHCCCCCCHHHHHHHHHHHhc----cCcHHHHHHHHHHHHhcc
Q 036275          197 RCLEIFEEMIDAGCYPDGGTAKVLISACSS----EDQIEQVTTLVRTMHKDM  244 (271)
Q Consensus       197 ~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~  244 (271)
                      +|.+.|++..+.|   +...+..+...+..    .++.++|..++++..+.+
T Consensus       205 ~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~  253 (490)
T 2xm6_A          205 ISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG  253 (490)
T ss_dssp             HHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT
T ss_pred             HHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC
Confidence            6666666665543   33444445544443    556666666666555443

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=99.28  E-value=3.4e-10  Score=78.58  Aligned_cols=129  Identities=15%  Similarity=0.181  Sum_probs=81.7

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHH
Q 036275           76 SHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYG  155 (271)
Q Consensus        76 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~  155 (271)
                      .|..+...+...|++++|..+++++.+.+ +.+...+..+...+...|++++|..+++++.+.+ +.+...+..+...+.
T Consensus         3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~   80 (136)
T 2fo7_A            3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYY   80 (136)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHH
Confidence            45566666777777777777777766553 2245566666666777777777777777666543 344556666666666


Q ss_pred             cCCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 036275          156 RGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMID  207 (271)
Q Consensus       156 ~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  207 (271)
                      ..|++++|.+.++++.... +.+..++..+...+...|++++|...++++.+
T Consensus        81 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~  131 (136)
T 2fo7_A           81 KQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE  131 (136)
T ss_dssp             TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred             HhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHHc
Confidence            7777777777766665542 22455566666666666666666666666554

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=99.28  E-value=4.2e-10  Score=78.08  Aligned_cols=127  Identities=13%  Similarity=0.089  Sum_probs=110.3

Q ss_pred             chHHHHHH--hcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 036275           44 PNLFVFIF--SIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGR  121 (271)
Q Consensus        44 y~~ll~~~--~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~  121 (271)
                      |..+...+  .|++++|.++|+++.+.+ +.+...+..+...+...|++++|..+++++.+.+ +.+...+..+...+..
T Consensus         4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~   81 (136)
T 2fo7_A            4 WYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYK   81 (136)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHHH
Confidence            44555666  999999999999998875 5578889999999999999999999999998875 3467788899999999


Q ss_pred             cCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHhchhC
Q 036275          122 LGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAK  173 (271)
Q Consensus       122 ~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~  173 (271)
                      .|++++|.+.++++.+.. +.+..++..+...+.+.|++++|.+.++++...
T Consensus        82 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~  132 (136)
T 2fo7_A           82 QGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL  132 (136)
T ss_dssp             TTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred             hcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence            999999999999998863 456788899999999999999999999988764

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=99.28  E-value=5.4e-11  Score=95.86  Aligned_cols=225  Identities=12%  Similarity=-0.034  Sum_probs=167.2

Q ss_pred             chHHHHHH--hcCHHHHHHHHHHHHHc----CC-CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCC-CCC----HHH
Q 036275           44 PNLFVFIF--SIYFSDAHAVFEEMKRL----GI-TPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGL-KPD----TFV  111 (271)
Q Consensus        44 y~~ll~~~--~g~~~~A~~~~~~~~~~----~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~-~~~----~~~  111 (271)
                      |..+...|  .|++++|.+.+++..+.    +. +....++..+...+...|++++|...+++..+... .++    ..+
T Consensus        46 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~  125 (338)
T 3ro2_A           46 YSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARA  125 (338)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHH
Confidence            55556666  99999999999987543    21 22366788899999999999999999988765311 112    347


Q ss_pred             HHHHHHHHHccCC--------------------HhHHHHHHHHHHhC----CCCC-ChhhHHHHHHHHHcCCCHHHHHHH
Q 036275          112 INSMLNLYGRLGQ--------------------FEKMEEVLTAMEKG----SYAA-DISTYNILINIYGRGGFIEKMEGL  166 (271)
Q Consensus       112 ~~~li~~~~~~g~--------------------~~~a~~~~~~m~~~----~~~~-~~~~~~~li~~~~~~g~~~~a~~~  166 (271)
                      +..+...+...|+                    +++|.+.+++..+.    +..+ ...++..+...+...|++++|.+.
T Consensus       126 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~  205 (338)
T 3ro2_A          126 LYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIA  205 (338)
T ss_dssp             HHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred             HHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence            8888899999999                    99999998876532    2111 245788889999999999999999


Q ss_pred             HHhchhCCC-CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHhccCcHHHHHHH
Q 036275          167 FQSLPAKRL-KPD----VVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGC-YPD----GGTAKVLISACSSEDQIEQVTTL  236 (271)
Q Consensus       167 ~~~m~~~g~-~~~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~-~p~----~~~~~~l~~~~~~~g~~~~a~~~  236 (271)
                      +++...... .++    ..++..+...+...|++++|...+++..+... .++    ..++..+...+...|++++|...
T Consensus       206 ~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~  285 (338)
T 3ro2_A          206 HEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDY  285 (338)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence            998764210 012    23788888999999999999999998764210 112    45677888889999999999999


Q ss_pred             HHHHHhcccc---------hhHHHHHHHhhccccccchhhh
Q 036275          237 VRTMHKDMKT---------ALPIYFNLYGEKGVARSNLGQY  268 (271)
Q Consensus       237 ~~~~~~~~~~---------~~~~~~~~~~~~G~~~~a~~~~  268 (271)
                      +++..+....         ....+..+|.+.|+.++|++.|
T Consensus       286 ~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~  326 (338)
T 3ro2_A          286 HLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFA  326 (338)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred             HHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHH
Confidence            9987653221         2344667799999999998876

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=99.27  E-value=9.5e-11  Score=97.30  Aligned_cols=216  Identities=13%  Similarity=-0.005  Sum_probs=112.5

Q ss_pred             hcCHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHHcc
Q 036275           52 SIYFSDAHAVFEEMKRLGITPT----MKSHMLLLTAYSKTGNVAKCEGVINQMHKS----GLKPD-TFVINSMLNLYGRL  122 (271)
Q Consensus        52 ~g~~~~A~~~~~~~~~~~~~~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----~~~~~-~~~~~~li~~~~~~  122 (271)
                      .|++++|...|++..+.+ +.+    ...|..+...+...|++++|...+++....    +..|. ...+..+...+...
T Consensus        22 ~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~  100 (406)
T 3sf4_A           22 SGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVL  100 (406)
T ss_dssp             TTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred             hccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHc
Confidence            666666666666666553 223    245556666666666666666666654332    11111 23455566666666


Q ss_pred             CCHhHHHHHHHHHHhC----CCC-CChhhHHHHHHHHHcCCC--------------------HHHHHHHHHhchhC----
Q 036275          123 GQFEKMEEVLTAMEKG----SYA-ADISTYNILINIYGRGGF--------------------IEKMEGLFQSLPAK----  173 (271)
Q Consensus       123 g~~~~a~~~~~~m~~~----~~~-~~~~~~~~li~~~~~~g~--------------------~~~a~~~~~~m~~~----  173 (271)
                      |++++|...+++..+.    +-+ ....++..+...|...|+                    +++|.+.+++....    
T Consensus       101 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~  180 (406)
T 3sf4_A          101 GNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTAL  180 (406)
T ss_dssp             TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             CCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhc
Confidence            6666666666655432    100 013355566666666666                    66666666554321    


Q ss_pred             CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCC----HHHHHHHHHHHhccCcHHHHHHHHHHHHhccc--
Q 036275          174 RLKP-DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAG-CYPD----GGTAKVLISACSSEDQIEQVTTLVRTMHKDMK--  245 (271)
Q Consensus       174 g~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~-~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~--  245 (271)
                      +-.| ...++..+...+...|++++|...+++..+.. -.++    ..++..+...+...|++++|...+++..+...  
T Consensus       181 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  260 (406)
T 3sf4_A          181 GDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQL  260 (406)
T ss_dssp             TCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred             cCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhC
Confidence            1111 12345555566666666666666666554310 0111    12455555566666666666666665543211  


Q ss_pred             -------chhHHHHHHHhhccccccchhhh
Q 036275          246 -------TALPIYFNLYGEKGVARSNLGQY  268 (271)
Q Consensus       246 -------~~~~~~~~~~~~~G~~~~a~~~~  268 (271)
                             .....+..+|...|+.++|++.|
T Consensus       261 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~  290 (406)
T 3sf4_A          261 KDRAVEAQSCYSLGNTYTLLQDYEKAIDYH  290 (406)
T ss_dssp             TCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             cCchHHHHHHHHHHHHHHHhCcHHHHHHHH
Confidence                   11222344456666666665544

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=99.27  E-value=1.2e-09  Score=101.43  Aligned_cols=194  Identities=10%  Similarity=0.092  Sum_probs=103.6

Q ss_pred             chHHHHHH--hcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 036275           44 PNLFVFIF--SIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGR  121 (271)
Q Consensus        44 y~~ll~~~--~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~  121 (271)
                      |..+-.++  .|++++|++.|.+.      -|...|..++.++.+.|++++|.++|...++..  ++....+.++.+|++
T Consensus      1108 WsqLAKAql~~G~~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAK 1179 (1630)
T 1xi4_A         1108 WSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAK 1179 (1630)
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHh
Confidence            55555555  55666666655332      244555556666666666666666665544432  222222235555555


Q ss_pred             cCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 036275          122 LGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEI  201 (271)
Q Consensus       122 ~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~  201 (271)
                      .+++++...+.    +   .++...|..+...|...|++++|..+|...         ..|..+..++.+.|++++|.+.
T Consensus      1180 l~rleele~fI----~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEa 1243 (1630)
T 1xi4_A         1180 TNRLAELEEFI----N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDG 1243 (1630)
T ss_pred             hcCHHHHHHHH----h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHH
Confidence            55555332221    1   234444555666666666666666666653         2566666666666666666666


Q ss_pred             HHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhcccchhHHHHHHHhhccccccchhhh
Q 036275          202 FEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKDMKTALPIYFNLYGEKGVARSNLGQY  268 (271)
Q Consensus       202 ~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~a~~~~  268 (271)
                      +++.      .+..+|..+-.+|...|++..|...... ....+.....+...|.+.|.+++|+..+
T Consensus      1244 arKA------~n~~aWkev~~acve~~Ef~LA~~cgl~-Iiv~~deLeeli~yYe~~G~feEAI~Ll 1303 (1630)
T 1xi4_A         1244 ARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLH-IVVHADELEELINYYQDRGYFEELITML 1303 (1630)
T ss_pred             HHHh------CCHHHHHHHHHHHhhhhHHHHHHHHHHh-hhcCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            6553      2345555555555555555555554443 1122223345566677777777777654

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=99.27  E-value=4.9e-11  Score=96.10  Aligned_cols=216  Identities=13%  Similarity=0.001  Sum_probs=163.7

Q ss_pred             hcCHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHcc
Q 036275           52 SIYFSDAHAVFEEMKRLGITPT----MKSHMLLLTAYSKTGNVAKCEGVINQMHKS----GLKP-DTFVINSMLNLYGRL  122 (271)
Q Consensus        52 ~g~~~~A~~~~~~~~~~~~~~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----~~~~-~~~~~~~li~~~~~~  122 (271)
                      .|++++|...|+++.+.. +.+    ...+..+...+...|++++|...+++..+.    +..| ....+..+...+...
T Consensus        18 ~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~   96 (338)
T 3ro2_A           18 SGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVL   96 (338)
T ss_dssp             TTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT
T ss_pred             hccHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHc
Confidence            999999999999998874 334    467888999999999999999999887543    2222 245688889999999


Q ss_pred             CCHhHHHHHHHHHHhC----CCCC-ChhhHHHHHHHHHcCCC--------------------HHHHHHHHHhchhC----
Q 036275          123 GQFEKMEEVLTAMEKG----SYAA-DISTYNILINIYGRGGF--------------------IEKMEGLFQSLPAK----  173 (271)
Q Consensus       123 g~~~~a~~~~~~m~~~----~~~~-~~~~~~~li~~~~~~g~--------------------~~~a~~~~~~m~~~----  173 (271)
                      |++++|...+++..+.    +-++ ...++..+...+...|+                    +++|.+.+++....    
T Consensus        97 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~  176 (338)
T 3ro2_A           97 GNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTAL  176 (338)
T ss_dssp             TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhc
Confidence            9999999999887653    1111 13478889999999999                    99999999876532    


Q ss_pred             CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHhccCcHHHHHHHHHHHHhcccc-
Q 036275          174 RLKP-DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGC-YPD----GGTAKVLISACSSEDQIEQVTTLVRTMHKDMKT-  246 (271)
Q Consensus       174 g~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~-~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-  246 (271)
                      +..+ ...++..+...+...|++++|...+++..+... .++    ..++..+...+...|++++|..++++..+.... 
T Consensus       177 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~  256 (338)
T 3ro2_A          177 GDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQL  256 (338)
T ss_dssp             TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT
T ss_pred             CCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh
Confidence            1111 134688888899999999999999998764210 112    237778888899999999999999987643221 


Q ss_pred             --------hhHHHHHHHhhccccccchhhh
Q 036275          247 --------ALPIYFNLYGEKGVARSNLGQY  268 (271)
Q Consensus       247 --------~~~~~~~~~~~~G~~~~a~~~~  268 (271)
                              ....+..+|...|+.++|++.|
T Consensus       257 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~  286 (338)
T 3ro2_A          257 KDRAVEAQSCYSLGNTYTLLQDYEKAIDYH  286 (338)
T ss_dssp             TCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             cchhHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence                    2334566789999999998765

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=99.27  E-value=7.4e-09  Score=88.72  Aligned_cols=202  Identities=12%  Similarity=0.068  Sum_probs=136.3

Q ss_pred             hcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc----cC
Q 036275           52 SIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSK----TGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGR----LG  123 (271)
Q Consensus        52 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~----~g  123 (271)
                      .+++++|.+.|++..+.|   ++..+..|...|..    .+++++|+..|++..+.|   +...+..|...|..    .+
T Consensus        92 ~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~  165 (490)
T 2xm6_A           92 PQDYAQAVIWYKKAALKG---LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTR  165 (490)
T ss_dssp             CCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCC
T ss_pred             CCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCC
Confidence            357888888888887765   55667777777777    678888888888887765   45566667777766    67


Q ss_pred             CHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHc----CCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHh----cCCH
Q 036275          124 QFEKMEEVLTAMEKGSYAADISTYNILINIYGR----GGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSR----KKLY  195 (271)
Q Consensus       124 ~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~----~g~~  195 (271)
                      +.++|.+.|++..+.|   +...+..+...|..    .++.++|.+.|++..+.|   +...+..+...|..    .+++
T Consensus       166 d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~  239 (490)
T 2xm6_A          166 DYVMAREWYSKAAEQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDY  239 (490)
T ss_dssp             CHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCH
T ss_pred             CHHHHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCH
Confidence            7888888888877764   56677777777776    777888888888777654   55666666666665    6777


Q ss_pred             HHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc----cCcHHHHHHHHHHHHhcccch-hHHHHHHHhhc-----cccccch
Q 036275          196 RRCLEIFEEMIDAGCYPDGGTAKVLISACSS----EDQIEQVTTLVRTMHKDMKTA-LPIYFNLYGEK-----GVARSNL  265 (271)
Q Consensus       196 ~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~-~~~~~~~~~~~-----G~~~~a~  265 (271)
                      ++|...|++..+.|   +...+..+...+..    .++.++|..++++..+.+.+. ...+-.+|...     ++.++|+
T Consensus       240 ~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~~~~g~~~~~~~A~  316 (490)
T 2xm6_A          240 TQSRVLFSQSAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQGNSDGQYYLAHLYDKGAEGVAKNREQAI  316 (490)
T ss_dssp             HHHHHHHHHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHCBTTBCCCHHHHH
T ss_pred             HHHHHHHHHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCCcCCHHHHH
Confidence            77777777766654   34455555555555    677777777777766544322 22333445444     5555555


Q ss_pred             hhh
Q 036275          266 GQY  268 (271)
Q Consensus       266 ~~~  268 (271)
                      ..|
T Consensus       317 ~~~  319 (490)
T 2xm6_A          317 SWY  319 (490)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            543

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=99.27  E-value=1.8e-10  Score=102.81  Aligned_cols=188  Identities=9%  Similarity=-0.012  Sum_probs=152.2

Q ss_pred             HHHHH-hcCHHHHHHHHHHHH--------HcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 036275           47 FVFIF-SIYFSDAHAVFEEMK--------RLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLN  117 (271)
Q Consensus        47 ll~~~-~g~~~~A~~~~~~~~--------~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~  117 (271)
                      ++.++ .|++++|++.+++..        +.. +.+...+..+..++.+.|++++|+..|++..+.. +-+...|..+..
T Consensus       398 ~~~a~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~  475 (681)
T 2pzi_A          398 VLQATVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAV  475 (681)
T ss_dssp             HHHHTTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHH
T ss_pred             HhhcccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHH
Confidence            34446 999999999999998        443 5678889999999999999999999999998874 336788999999


Q ss_pred             HHHccCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 036275          118 LYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRR  197 (271)
Q Consensus       118 ~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~  197 (271)
                      ++...|++++|++.|++..+.. +.+...+..+..++.+.|++++ .+.|++..+.. +-+...|..+..++...|++++
T Consensus       476 ~~~~~g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~  552 (681)
T 2pzi_A          476 AELLTGDYDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTVWSTN-DGVISAAFGLARARSAEGDRVG  552 (681)
T ss_dssp             HHHHHTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-CchHHHHHHHHHHHHHcCCHHH
Confidence            9999999999999999998863 4567889999999999999999 99999988763 2357889999999999999999


Q ss_pred             HHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCc--------HHHHHHHHHHHH
Q 036275          198 CLEIFEEMIDAGCYPD-GGTAKVLISACSSEDQ--------IEQVTTLVRTMH  241 (271)
Q Consensus       198 a~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~--------~~~a~~~~~~~~  241 (271)
                      |...|++..+.  .|+ ...+..+..++...++        +++|.+.+..+.
T Consensus       553 A~~~~~~al~l--~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~  603 (681)
T 2pzi_A          553 AVRTLDEVPPT--SRHFTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVEALP  603 (681)
T ss_dssp             HHHHHHTSCTT--STTHHHHHHHHHHHTC-------CCHHHHHHHHHHHHTSC
T ss_pred             HHHHHHhhccc--CcccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHhhCC
Confidence            99999998775  455 5667777777766444        555555555443

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=99.27  E-value=4.5e-09  Score=79.88  Aligned_cols=186  Identities=10%  Similarity=0.049  Sum_probs=150.4

Q ss_pred             HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC----CHhHHHHH
Q 036275           56 SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLG----QFEKMEEV  131 (271)
Q Consensus        56 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g----~~~~a~~~  131 (271)
                      .+|.+.|++..+.|   ++..+..+...|...+++++|+..|++..+.|   +...+..|...|.. +    +.++|.+.
T Consensus         3 ~eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~   75 (212)
T 3rjv_A            3 TEPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQL   75 (212)
T ss_dssp             -CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHH
T ss_pred             chHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHH
Confidence            35778888888876   77889999999999999999999999999875   56777788888887 6    89999999


Q ss_pred             HHHHHhCCCCCChhhHHHHHHHHHc----CCCHHHHHHHHHhchhCCCC-CCHHHHHHHHHHHHh----cCCHHHHHHHH
Q 036275          132 LTAMEKGSYAADISTYNILINIYGR----GGFIEKMEGLFQSLPAKRLK-PDVVTWTSRLAAYSR----KKLYRRCLEIF  202 (271)
Q Consensus       132 ~~~m~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~g~~-~~~~~~~~li~~~~~----~g~~~~a~~~~  202 (271)
                      |++..+.|   +...+..|...|..    .+++++|.+.|++..+.|.. .+...+..|...|..    .+++++|...|
T Consensus        76 ~~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~  152 (212)
T 3rjv_A           76 AEKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYF  152 (212)
T ss_dssp             HHHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHH
T ss_pred             HHHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHH
Confidence            99998875   67788888888987    89999999999999887521 026788899999988    88999999999


Q ss_pred             HHHHHCCCCCCHHHHHHHHHHHhcc-C-----cHHHHHHHHHHHHhcccchhHHHHH
Q 036275          203 EEMIDAGCYPDGGTAKVLISACSSE-D-----QIEQVTTLVRTMHKDMKTALPIYFN  253 (271)
Q Consensus       203 ~~m~~~~~~p~~~~~~~l~~~~~~~-g-----~~~~a~~~~~~~~~~~~~~~~~~~~  253 (271)
                      ++..+.  ..+...+..|...|... |     +.++|..++++..+.+.......+.
T Consensus       153 ~~A~~~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~~~A~~~l~  207 (212)
T 3rjv_A          153 KGSSSL--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGFDTGCEEFD  207 (212)
T ss_dssp             HHHHHT--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred             HHHHHc--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            999886  23444566666666542 3     8999999999998887665544443

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=99.25  E-value=5.6e-10  Score=92.45  Aligned_cols=217  Identities=11%  Similarity=0.010  Sum_probs=162.5

Q ss_pred             hcCHHHHHHHHHHHHHcC-CCC----CHHHHHHHHHHHHhcCChHHHHHHHHHHHHC----CC-CC-CHHHHHHHHHHHH
Q 036275           52 SIYFSDAHAVFEEMKRLG-ITP----TMKSHMLLLTAYSKTGNVAKCEGVINQMHKS----GL-KP-DTFVINSMLNLYG  120 (271)
Q Consensus        52 ~g~~~~A~~~~~~~~~~~-~~~----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----~~-~~-~~~~~~~li~~~~  120 (271)
                      .|++++|+..|++..+.. -.+    ...++..+...|...|+++.|...+++..+.    +. .+ ...+++.+...|.
T Consensus       114 ~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~  193 (378)
T 3q15_A          114 QKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYD  193 (378)
T ss_dssp             TTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHH
T ss_pred             HCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHH
Confidence            999999999999987642 112    3567888999999999999999999887653    11 11 2456888999999


Q ss_pred             ccCCHhHHHHHHHHHHhC----CCCC-ChhhHHHHHHHHHcCCCHHHHHHHHHhchh-----CCCCCCHHHHHHHHHHHH
Q 036275          121 RLGQFEKMEEVLTAMEKG----SYAA-DISTYNILINIYGRGGFIEKMEGLFQSLPA-----KRLKPDVVTWTSRLAAYS  190 (271)
Q Consensus       121 ~~g~~~~a~~~~~~m~~~----~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-----~g~~~~~~~~~~li~~~~  190 (271)
                      ..|++++|.+.+++..+.    +-++ ...++..+...|...|++++|.+.+++...     .. +....++..+...+.
T Consensus       194 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~la~~~~  272 (378)
T 3q15_A          194 DFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVP-DLLPKVLFGLSWTLC  272 (378)
T ss_dssp             HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCG-GGHHHHHHHHHHHHH
T ss_pred             HhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCC-hhHHHHHHHHHHHHH
Confidence            999999999999887652    2111 245788899999999999999999999876     32 223678889999999


Q ss_pred             hcCCHHHHHHHHHHHHHC----CCCCCHHHHHHHHHHHhccCc---HHHHHHHHHHHHhcc--cchhHHHHHHHhhcccc
Q 036275          191 RKKLYRRCLEIFEEMIDA----GCYPDGGTAKVLISACSSEDQ---IEQVTTLVRTMHKDM--KTALPIYFNLYGEKGVA  261 (271)
Q Consensus       191 ~~g~~~~a~~~~~~m~~~----~~~p~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~--~~~~~~~~~~~~~~G~~  261 (271)
                      ..|++++|...+++..+.    +-+.....+..+...+...++   +.+|..++++.....  ......+...|.+.|+.
T Consensus       273 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~y~~~g~~  352 (378)
T 3q15_A          273 KAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKNLHAYIEACARSAAAVFESSCHF  352 (378)
T ss_dssp             HTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred             HCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHCCCH
Confidence            999999999999998763    112223455666666778888   777777777632211  11234467789999999


Q ss_pred             ccchhhhh
Q 036275          262 RSNLGQYI  269 (271)
Q Consensus       262 ~~a~~~~~  269 (271)
                      ++|++.|.
T Consensus       353 ~~A~~~~~  360 (378)
T 3q15_A          353 EQAAAFYR  360 (378)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99998763

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=99.25  E-value=3e-11  Score=100.35  Aligned_cols=225  Identities=11%  Similarity=-0.052  Sum_probs=165.1

Q ss_pred             chHHHHHH--hcCHHHHHHHHHHHHHc----CCC-CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCC-CCC----HHH
Q 036275           44 PNLFVFIF--SIYFSDAHAVFEEMKRL----GIT-PTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGL-KPD----TFV  111 (271)
Q Consensus        44 y~~ll~~~--~g~~~~A~~~~~~~~~~----~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~-~~~----~~~  111 (271)
                      |..+...|  .|++++|...|++..+.    +.+ ....++..+...+...|++++|...+++..+... .++    ..+
T Consensus        50 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~  129 (406)
T 3sf4_A           50 YSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARA  129 (406)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHH
Confidence            44555566  99999999999987543    211 2356788888999999999999999988765411 011    347


Q ss_pred             HHHHHHHHHccCC--------------------HhHHHHHHHHHHhC----CCCC-ChhhHHHHHHHHHcCCCHHHHHHH
Q 036275          112 INSMLNLYGRLGQ--------------------FEKMEEVLTAMEKG----SYAA-DISTYNILINIYGRGGFIEKMEGL  166 (271)
Q Consensus       112 ~~~li~~~~~~g~--------------------~~~a~~~~~~m~~~----~~~~-~~~~~~~li~~~~~~g~~~~a~~~  166 (271)
                      +..+...+...|+                    +++|.+.+++..+.    +..+ ...++..+...|...|++++|.+.
T Consensus       130 ~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~  209 (406)
T 3sf4_A          130 LYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIA  209 (406)
T ss_dssp             HHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHH
T ss_pred             HHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHH
Confidence            8888899999999                    99999998876542    2112 245788889999999999999999


Q ss_pred             HHhchhCCC-CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHhccCcHHHHHHH
Q 036275          167 FQSLPAKRL-KPD----VVTWTSRLAAYSRKKLYRRCLEIFEEMIDA----GCYPD-GGTAKVLISACSSEDQIEQVTTL  236 (271)
Q Consensus       167 ~~~m~~~g~-~~~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~p~-~~~~~~l~~~~~~~g~~~~a~~~  236 (271)
                      +++...... .++    ..++..+...+...|++++|...+++..+.    +..+. ..++..+...+...|++++|...
T Consensus       210 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~  289 (406)
T 3sf4_A          210 HEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDY  289 (406)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHH
Confidence            998764210 112    237888889999999999999999887642    11111 45777888889999999999999


Q ss_pred             HHHHHhccc---------chhHHHHHHHhhccccccchhhh
Q 036275          237 VRTMHKDMK---------TALPIYFNLYGEKGVARSNLGQY  268 (271)
Q Consensus       237 ~~~~~~~~~---------~~~~~~~~~~~~~G~~~~a~~~~  268 (271)
                      +++..+...         .....+..+|...|+.++|++.|
T Consensus       290 ~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~  330 (406)
T 3sf4_A          290 HLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFA  330 (406)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred             HHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            998765321         12334566788999999998776

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=99.24  E-value=4.2e-10  Score=89.94  Aligned_cols=200  Identities=7%  Similarity=-0.050  Sum_probs=145.4

Q ss_pred             CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHHccCCHhHH
Q 036275           54 YFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKS----GLKPD-TFVINSMLNLYGRLGQFEKM  128 (271)
Q Consensus        54 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----~~~~~-~~~~~~li~~~~~~g~~~~a  128 (271)
                      ++++|...|.+.               ...|...|++++|...|++..+.    |-.++ ..+|+.+..+|...|++++|
T Consensus        32 ~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A   96 (292)
T 1qqe_A           32 KFEEAADLCVQA---------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNA   96 (292)
T ss_dssp             HHHHHHHHHHHH---------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             cHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHH
Confidence            366777766655               45677899999999999887653    32222 46789999999999999999


Q ss_pred             HHHHHHHHhC----CCCC-ChhhHHHHHHHHHcC-CCHHHHHHHHHhchhCCCC-CC----HHHHHHHHHHHHhcCCHHH
Q 036275          129 EEVLTAMEKG----SYAA-DISTYNILINIYGRG-GFIEKMEGLFQSLPAKRLK-PD----VVTWTSRLAAYSRKKLYRR  197 (271)
Q Consensus       129 ~~~~~~m~~~----~~~~-~~~~~~~li~~~~~~-g~~~~a~~~~~~m~~~g~~-~~----~~~~~~li~~~~~~g~~~~  197 (271)
                      +..+++..+.    |-.. ...+++.+..+|... |++++|...|++....... .+    ..++..+...+...|++++
T Consensus        97 ~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~  176 (292)
T 1qqe_A           97 VDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIE  176 (292)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHH
Confidence            9999887653    2111 145788999999996 9999999999987653110 01    3568889999999999999


Q ss_pred             HHHHHHHHHHCCCCCCH------HHHHHHHHHHhccCcHHHHHHHHHHHHhcccchh--------HHHHHHHh--hcccc
Q 036275          198 CLEIFEEMIDAGCYPDG------GTAKVLISACSSEDQIEQVTTLVRTMHKDMKTAL--------PIYFNLYG--EKGVA  261 (271)
Q Consensus       198 a~~~~~~m~~~~~~p~~------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~--------~~~~~~~~--~~G~~  261 (271)
                      |...+++..+.......      ..+..+..++...|++++|...+++..+..+...        ..+...|.  ..+++
T Consensus       177 A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~  256 (292)
T 1qqe_A          177 ASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQL  256 (292)
T ss_dssp             HHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTH
T ss_pred             HHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHH
Confidence            99999999885432221      2567777888999999999999999876444321        12334443  45667


Q ss_pred             ccchhhh
Q 036275          262 RSNLGQY  268 (271)
Q Consensus       262 ~~a~~~~  268 (271)
                      ++|+..|
T Consensus       257 ~~A~~~~  263 (292)
T 1qqe_A          257 SEHCKEF  263 (292)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHh
Confidence            7777766

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=99.23  E-value=1.8e-09  Score=93.54  Aligned_cols=189  Identities=10%  Similarity=0.039  Sum_probs=151.5

Q ss_pred             cCHH-------HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-H-HHHHHHHHHHHccC
Q 036275           53 IYFS-------DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPD-T-FVINSMLNLYGRLG  123 (271)
Q Consensus        53 g~~~-------~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~-~-~~~~~li~~~~~~g  123 (271)
                      |+++       +|.++|++..+.-.|.+...|..++..+.+.|++++|..+|+++.+.  .|+ . ..|..++..+.+.|
T Consensus       293 g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~  370 (530)
T 2ooe_A          293 GDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAE  370 (530)
T ss_dssp             TCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHH
T ss_pred             cchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHhc
Confidence            7876       89999999986323557899999999999999999999999999986  443 3 57889999999999


Q ss_pred             CHhHHHHHHHHHHhCCCCCChhhHHHHHHH-HHcCCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 036275          124 QFEKMEEVLTAMEKGSYAADISTYNILINI-YGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIF  202 (271)
Q Consensus       124 ~~~~a~~~~~~m~~~~~~~~~~~~~~li~~-~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~  202 (271)
                      +.++|.++|++..+.. +.+...|...+.. +...|+.++|..+|++..+.. +-+...|..++..+.+.|+.++|..+|
T Consensus       371 ~~~~A~~~~~~Al~~~-~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~-p~~~~~~~~~~~~~~~~g~~~~Ar~~~  448 (530)
T 2ooe_A          371 GIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLF  448 (530)
T ss_dssp             HHHHHHHHHHHHHTCT-TCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHTTTTCHHHHHHHH
T ss_pred             CHHHHHHHHHHHHhcc-CCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhCCCHhhHHHHH
Confidence            9999999999998862 2233333332222 346899999999999987752 235788999999999999999999999


Q ss_pred             HHHHHCC-CCCC--HHHHHHHHHHHhccCcHHHHHHHHHHHHhccc
Q 036275          203 EEMIDAG-CYPD--GGTAKVLISACSSEDQIEQVTTLVRTMHKDMK  245 (271)
Q Consensus       203 ~~m~~~~-~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~  245 (271)
                      ++....+ ..|+  ...|...+......|+.+.+..+.+++.+..+
T Consensus       449 ~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~~p  494 (530)
T 2ooe_A          449 ERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFR  494 (530)
T ss_dssp             HHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHTH
T ss_pred             HHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence            9998863 2332  45788888888889999999999999876554

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=99.23  E-value=1.4e-10  Score=91.27  Aligned_cols=199  Identities=14%  Similarity=0.149  Sum_probs=139.2

Q ss_pred             chHHHHHH--hcCHHHHHHHHHHHHHc------C-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC------CC-CC
Q 036275           44 PNLFVFIF--SIYFSDAHAVFEEMKRL------G-ITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKS------GL-KP  107 (271)
Q Consensus        44 y~~ll~~~--~g~~~~A~~~~~~~~~~------~-~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~------~~-~~  107 (271)
                      |..+...|  .|++++|++.|++..+.      + .+....++..+...+...|++++|...+++..+.      .. +.
T Consensus        46 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  125 (283)
T 3edt_B           46 LNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPD  125 (283)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHH
T ss_pred             HHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChH
Confidence            66666666  99999999999998764      2 2335678899999999999999999999988764      11 22


Q ss_pred             CHHHHHHHHHHHHccCCHhHHHHHHHHHHhC------CCCC-ChhhHHHHHHHHHcCCCHHHHHHHHHhchhC-------
Q 036275          108 DTFVINSMLNLYGRLGQFEKMEEVLTAMEKG------SYAA-DISTYNILINIYGRGGFIEKMEGLFQSLPAK-------  173 (271)
Q Consensus       108 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~------~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-------  173 (271)
                      ...++..+...+...|++++|..++++..+.      +-.| ...++..+...|...|++++|.+.+++....       
T Consensus       126 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~  205 (283)
T 3edt_B          126 VAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFG  205 (283)
T ss_dssp             HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSS
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCC
Confidence            3567888999999999999999999988764      1122 3578889999999999999999999987753       


Q ss_pred             CCCCCH-HHHHHHHHHHHhcCCHH------HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhc
Q 036275          174 RLKPDV-VTWTSRLAAYSRKKLYR------RCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKD  243 (271)
Q Consensus       174 g~~~~~-~~~~~li~~~~~~g~~~------~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~  243 (271)
                      ...+.. ..|..+...+...+...      .+...++.... ..+....++..+...+...|++++|..++++..+.
T Consensus       206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  281 (283)
T 3edt_B          206 SVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKV-DSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRN  281 (283)
T ss_dssp             SCCSSCCCHHHHHHHHHHTTCCCCC------------CCCC-CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred             CcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            112222 23333333333322222      22222221111 11223457788889999999999999999987653

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=99.23  E-value=9.1e-10  Score=83.46  Aligned_cols=162  Identities=14%  Similarity=0.082  Sum_probs=105.8

Q ss_pred             hcCHHHHHHHHHHHHHcCCCCCHHHHHH----------------HHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 036275           52 SIYFSDAHAVFEEMKRLGITPTMKSHML----------------LLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSM  115 (271)
Q Consensus        52 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~----------------li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l  115 (271)
                      .|++++|+..|++..+.+ |-+...|..                +..++.+.|++++|+..|++..+... -+...+..+
T Consensus        17 ~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l   94 (208)
T 3urz_A           17 AGQNGQAVSYFRQTIALN-IDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKAP-NNVDCLEAC   94 (208)
T ss_dssp             TTCHHHHHHHHHHHHHHC-HHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHhC-CCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC-CCHHHHHHH
Confidence            889999999998887764 335556666                77777788888888888877777642 256677777


Q ss_pred             HHHHHccCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCC--HHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcC
Q 036275          116 LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGF--IEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKK  193 (271)
Q Consensus       116 i~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~--~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g  193 (271)
                      ..++...|++++|+..|++..+.. |.+..++..+..+|...|+  .+.+...+.....  ..|....+.....++...|
T Consensus        95 g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~a~~~~g~~~~~~~  171 (208)
T 3urz_A           95 AEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSS--PTKMQYARYRDGLSKLFTT  171 (208)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---C--CCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhC--CCchhHHHHHHHHHHHHcc
Confidence            777888888888888888777753 4456777777777665543  3344555555432  1222223444455566677


Q ss_pred             CHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 036275          194 LYRRCLEIFEEMIDAGCYPDGGTAKVL  220 (271)
Q Consensus       194 ~~~~a~~~~~~m~~~~~~p~~~~~~~l  220 (271)
                      ++++|...|++.++.  .|+......+
T Consensus       172 ~~~~A~~~~~~al~l--~P~~~~~~~l  196 (208)
T 3urz_A          172 RYEKARNSLQKVILR--FPSTEAQKTL  196 (208)
T ss_dssp             THHHHHHHHHHHTTT--SCCHHHHHHH
T ss_pred             CHHHHHHHHHHHHHh--CCCHHHHHHH
Confidence            788888888777664  5665444333

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=99.23  E-value=1e-09  Score=85.97  Aligned_cols=172  Identities=10%  Similarity=0.048  Sum_probs=89.2

Q ss_pred             CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHccCCHhHHHHHHHHHHhCC--CCCChhhH
Q 036275           73 TMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPD---TFVINSMLNLYGRLGQFEKMEEVLTAMEKGS--YAADISTY  147 (271)
Q Consensus        73 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~---~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~--~~~~~~~~  147 (271)
                      +...+..+...+.+.|++++|+..|+++.+.... +   ...+..+..++.+.|++++|...|+...+..  -+.....+
T Consensus        14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~   92 (261)
T 3qky_A           14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRT-HEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAE   92 (261)
T ss_dssp             SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSC-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHH
T ss_pred             CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC-CcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHH
Confidence            3444444555555555555555555555544211 1   3344445555555555555555555554431  00112334


Q ss_pred             HHHHHHHHc--------CCCHHHHHHHHHhchhCCCCCC-HHH-----------------HHHHHHHHHhcCCHHHHHHH
Q 036275          148 NILINIYGR--------GGFIEKMEGLFQSLPAKRLKPD-VVT-----------------WTSRLAAYSRKKLYRRCLEI  201 (271)
Q Consensus       148 ~~li~~~~~--------~g~~~~a~~~~~~m~~~g~~~~-~~~-----------------~~~li~~~~~~g~~~~a~~~  201 (271)
                      ..+..++..        .|++++|...|+++....  |+ ...                 +..+...|...|++++|...
T Consensus        93 ~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~  170 (261)
T 3qky_A           93 YERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY--PNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVT  170 (261)
T ss_dssp             HHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC--TTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHhcccccccchhHHHHHHHHHHHHHHC--cCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHH
Confidence            444445544        555555555555544431  11 111                 24456667777777777777


Q ss_pred             HHHHHHCCCC-C-CHHHHHHHHHHHhcc----------CcHHHHHHHHHHHHhcccch
Q 036275          202 FEEMIDAGCY-P-DGGTAKVLISACSSE----------DQIEQVTTLVRTMHKDMKTA  247 (271)
Q Consensus       202 ~~~m~~~~~~-p-~~~~~~~l~~~~~~~----------g~~~~a~~~~~~~~~~~~~~  247 (271)
                      |++.++..-. + ....+..+..++...          |++++|...++++.+..+..
T Consensus       171 ~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~  228 (261)
T 3qky_A          171 YEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDS  228 (261)
T ss_dssp             HHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTC
T ss_pred             HHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCC
Confidence            7777654211 1 234555666666544          77777777777777655443

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=99.23  E-value=6.7e-10  Score=87.07  Aligned_cols=163  Identities=13%  Similarity=0.122  Sum_probs=129.5

Q ss_pred             chHHHHHH-hcCHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCC-CC-CHHHHHHHHH
Q 036275           44 PNLFVFIF-SIYFSDAHAVFEEMKRLGITPT---MKSHMLLLTAYSKTGNVAKCEGVINQMHKSGL-KP-DTFVINSMLN  117 (271)
Q Consensus        44 y~~ll~~~-~g~~~~A~~~~~~~~~~~~~~~---~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~-~~-~~~~~~~li~  117 (271)
                      |+.-...+ .|++++|++.|+++.+.. |.+   ...+..+..++.+.|++++|+..|++..+... .| ....+..+..
T Consensus        19 ~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~   97 (261)
T 3qky_A           19 FERAMEFYNQGKYDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYERAM   97 (261)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHHHHH
Confidence            55555555 999999999999998874 334   77888999999999999999999999988632 22 2456777888


Q ss_pred             HHHc--------cCCHhHHHHHHHHHHhCCCCCChhhH-----------------HHHHHHHHcCCCHHHHHHHHHhchh
Q 036275          118 LYGR--------LGQFEKMEEVLTAMEKGSYAADISTY-----------------NILINIYGRGGFIEKMEGLFQSLPA  172 (271)
Q Consensus       118 ~~~~--------~g~~~~a~~~~~~m~~~~~~~~~~~~-----------------~~li~~~~~~g~~~~a~~~~~~m~~  172 (271)
                      ++..        .|++++|+..|++..+.. +.+....                 ..+...|.+.|++++|...|+++..
T Consensus        98 ~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~  176 (261)
T 3qky_A           98 CYYKLSPPYELDQTDTRKAIEAFQLFIDRY-PNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYEAVFD  176 (261)
T ss_dssp             HHHHHCCCTTSCCHHHHHHHHHHHHHHHHC-TTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHhcccccccchhHHHHHHHHHHHHHHC-cCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence            8888        999999999999998762 3333444                 4568889999999999999999887


Q ss_pred             CCCC-C-CHHHHHHHHHHHHhc----------CCHHHHHHHHHHHHHC
Q 036275          173 KRLK-P-DVVTWTSRLAAYSRK----------KLYRRCLEIFEEMIDA  208 (271)
Q Consensus       173 ~g~~-~-~~~~~~~li~~~~~~----------g~~~~a~~~~~~m~~~  208 (271)
                      .... + ....+..+..+|...          |++++|...+++..+.
T Consensus       177 ~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~  224 (261)
T 3qky_A          177 AYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQI  224 (261)
T ss_dssp             HCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHH
T ss_pred             HCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHH
Confidence            5211 1 245778888888866          8999999999998875

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=99.21  E-value=3.4e-10  Score=93.82  Aligned_cols=189  Identities=7%  Similarity=-0.101  Sum_probs=141.1

Q ss_pred             HHHHHHhcCChHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHccCCHhHHHHHHHHHHhC--CC----CCChhhHH
Q 036275           80 LLTAYSKTGNVAKCEGVINQMHKS----GLKP-DTFVINSMLNLYGRLGQFEKMEEVLTAMEKG--SY----AADISTYN  148 (271)
Q Consensus        80 li~~~~~~~~~~~a~~~~~~m~~~----~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--~~----~~~~~~~~  148 (271)
                      ....+...|++++|...+++..+.    +-.+ ...++..+...|...|++++|...+++..+.  ..    +....+++
T Consensus       109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  188 (383)
T 3ulq_A          109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS  188 (383)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred             HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence            566778899999999999998764    2111 2357888999999999999999999987653  11    11246788


Q ss_pred             HHHHHHHcCCCHHHHHHHHHhchhCCC-CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CC-CCCHHHHH
Q 036275          149 ILINIYGRGGFIEKMEGLFQSLPAKRL-KPD----VVTWTSRLAAYSRKKLYRRCLEIFEEMIDA----GC-YPDGGTAK  218 (271)
Q Consensus       149 ~li~~~~~~g~~~~a~~~~~~m~~~g~-~~~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~-~p~~~~~~  218 (271)
                      .+...|...|++++|.+.|++...... .++    ..++..+...|...|++++|...+++..+.    +. +....++.
T Consensus       189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  268 (383)
T 3ulq_A          189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF  268 (383)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred             HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence            899999999999999999998764210 112    247888999999999999999999988761    32 33466788


Q ss_pred             HHHHHHhccCcHHHHHHHHHHHHhcc----cch----hHHHHHHHhhccc---cccchhhh
Q 036275          219 VLISACSSEDQIEQVTTLVRTMHKDM----KTA----LPIYFNLYGEKGV---ARSNLGQY  268 (271)
Q Consensus       219 ~l~~~~~~~g~~~~a~~~~~~~~~~~----~~~----~~~~~~~~~~~G~---~~~a~~~~  268 (271)
                      .+...+...|++++|...+++..+..    .+.    ...+-.+|...|+   .++|+..+
T Consensus       269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~  329 (383)
T 3ulq_A          269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFL  329 (383)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence            89999999999999999999876532    111    2335566777887   55555543

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=99.17  E-value=3.2e-08  Score=84.01  Aligned_cols=204  Identities=6%  Similarity=-0.054  Sum_probs=149.5

Q ss_pred             chHHHHHH--hcCHHHHHHHHHHHHHc--------CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC-----C-C-C
Q 036275           44 PNLFVFIF--SIYFSDAHAVFEEMKRL--------GITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKS-----G-L-K  106 (271)
Q Consensus        44 y~~ll~~~--~g~~~~A~~~~~~~~~~--------~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-----~-~-~  106 (271)
                      ||.+-..+  .|++++|++.|++..+.        ..+....+|+.+..+|...|++++|...+++..+.     + . .
T Consensus        54 yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~  133 (472)
T 4g1t_A           54 CNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRI  133 (472)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCC
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccch
Confidence            88887777  99999999999987542        12345778999999999999999999999887642     1 1 1


Q ss_pred             CCHHHHHHHHHHHHc--cCCHhHHHHHHHHHHhCCCCCChhhHHHHHHH---HHcCCCHHHHHHHHHhchhCCCCCCHHH
Q 036275          107 PDTFVINSMLNLYGR--LGQFEKMEEVLTAMEKGSYAADISTYNILINI---YGRGGFIEKMEGLFQSLPAKRLKPDVVT  181 (271)
Q Consensus       107 ~~~~~~~~li~~~~~--~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~---~~~~g~~~~a~~~~~~m~~~g~~~~~~~  181 (271)
                      ....++..+..++..  .+++++|++.|++..+.. |.++..+..+..+   +...++.++|++.+++..+.. +.+..+
T Consensus       134 ~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~-p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-p~~~~~  211 (472)
T 4g1t_A          134 ESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK-PKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-PDNQYL  211 (472)
T ss_dssp             CCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-SSCHHH
T ss_pred             hhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-CcchHH
Confidence            234566666555544  457999999999998863 3445666655555   445678889999999877653 234566


Q ss_pred             HHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhcccchhHH
Q 036275          182 WTSRLAAYSR----KKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKDMKTALPI  250 (271)
Q Consensus       182 ~~~li~~~~~----~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~  250 (271)
                      +..+...+..    .|+.++|.+.+++..... +.+..++..+...+...|++++|...+++..+..+.....
T Consensus       212 ~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~  283 (472)
T 4g1t_A          212 KVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYL  283 (472)
T ss_dssp             HHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHH
T ss_pred             HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHHH
Confidence            6666555544    467789999999988754 5567888899999999999999999999998876655443

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=99.17  E-value=1.1e-09  Score=95.67  Aligned_cols=154  Identities=8%  Similarity=-0.033  Sum_probs=118.8

Q ss_pred             hcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHhHHHHH
Q 036275           52 SIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEV  131 (271)
Q Consensus        52 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~  131 (271)
                      .|++++|.+.|++..+.. +.+...|..+...+.+.|++++|.+.|++..+.. +-+...+..+...+...|++++|.+.
T Consensus         2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~   79 (568)
T 2vsy_A            2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVL   79 (568)
T ss_dssp             --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence            478899999999988765 5578899999999999999999999999999875 33678899999999999999999999


Q ss_pred             HHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHC
Q 036275          132 LTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRK---KLYRRCLEIFEEMIDA  208 (271)
Q Consensus       132 ~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~---g~~~~a~~~~~~m~~~  208 (271)
                      +++..+.. +.+...+..+..+|.+.|++++|.+.+++..+.. +-+...+..+...+...   |+.++|.+.+++..+.
T Consensus        80 ~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~  157 (568)
T 2vsy_A           80 LQQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ  157 (568)
T ss_dssp             HHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred             HHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence            99998863 4567899999999999999999999999988763 23577889999999999   9999999999998875


Q ss_pred             C
Q 036275          209 G  209 (271)
Q Consensus       209 ~  209 (271)
                      +
T Consensus       158 ~  158 (568)
T 2vsy_A          158 G  158 (568)
T ss_dssp             T
T ss_pred             C
Confidence            4

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=99.15  E-value=5.7e-09  Score=86.00  Aligned_cols=192  Identities=9%  Similarity=0.064  Sum_probs=81.4

Q ss_pred             hcCHHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHHC----CCC--CC-HHHHHHHHHHH
Q 036275           52 SIYFSDAHAVFEEMKRLGI-TPT----MKSHMLLLTAYSKTGNVAKCEGVINQMHKS----GLK--PD-TFVINSMLNLY  119 (271)
Q Consensus        52 ~g~~~~A~~~~~~~~~~~~-~~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----~~~--~~-~~~~~~li~~~  119 (271)
                      .|++++|.+.+++..+..- ..+    ..++..+...+...|++++|...+++..+.    +..  |. ...+..+...+
T Consensus        66 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~  145 (373)
T 1hz4_A           66 KGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLL  145 (373)
T ss_dssp             HTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHH
T ss_pred             cCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHH
Confidence            5555555555555433210 011    112334444455555555555555544332    111  11 22334444555


Q ss_pred             HccCCHhHHHHHHHHHHhCCCC--C--ChhhHHHHHHHHHcCCCHHHHHHHHHhchhCCCCCC-HHHHH-----HHHHHH
Q 036275          120 GRLGQFEKMEEVLTAMEKGSYA--A--DISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPD-VVTWT-----SRLAAY  189 (271)
Q Consensus       120 ~~~g~~~~a~~~~~~m~~~~~~--~--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~-~~~~~-----~li~~~  189 (271)
                      ...|++++|...+++.....-.  +  ...++..+...+...|++++|...+++.......++ ...+.     ..+..+
T Consensus       146 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~  225 (373)
T 1hz4_A          146 WAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYW  225 (373)
T ss_dssp             HHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHH
T ss_pred             HHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHH
Confidence            5555555555555554432110  0  123344455555555555555555555432210111 01111     112224


Q ss_pred             HhcCCHHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHhccCcHHHHHHHHHHHHhc
Q 036275          190 SRKKLYRRCLEIFEEMIDAGCYP---DGGTAKVLISACSSEDQIEQVTTLVRTMHKD  243 (271)
Q Consensus       190 ~~~g~~~~a~~~~~~m~~~~~~p---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~  243 (271)
                      ...|++++|...+++.......+   ....+..+...+...|++++|...+++....
T Consensus       226 ~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~  282 (373)
T 1hz4_A          226 QMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNEN  282 (373)
T ss_dssp             HHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            45555555555555544321110   1123344444555555555555555555443

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=99.13  E-value=3.9e-09  Score=86.96  Aligned_cols=216  Identities=6%  Similarity=-0.124  Sum_probs=108.6

Q ss_pred             hcCHHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHhcCChHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHcc
Q 036275           52 SIYFSDAHAVFEEMKRLGITPTM----KSHMLLLTAYSKTGNVAKCEGVINQMHKSGL-KPD----TFVINSMLNLYGRL  122 (271)
Q Consensus        52 ~g~~~~A~~~~~~~~~~~~~~~~----~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~-~~~----~~~~~~li~~~~~~  122 (271)
                      .|++++|...+++.....-..+.    ..++.+...+...|++++|...+++...... ..+    ..++..+...+...
T Consensus        27 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~  106 (373)
T 1hz4_A           27 DGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQ  106 (373)
T ss_dssp             TTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred             CCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHC
Confidence            66666666666665554322222    2566666666666666666666665543210 011    12244555566666


Q ss_pred             CCHhHHHHHHHHHHhC----CCC--C-ChhhHHHHHHHHHcCCCHHHHHHHHHhchhCCCC----CCHHHHHHHHHHHHh
Q 036275          123 GQFEKMEEVLTAMEKG----SYA--A-DISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK----PDVVTWTSRLAAYSR  191 (271)
Q Consensus       123 g~~~~a~~~~~~m~~~----~~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~----~~~~~~~~li~~~~~  191 (271)
                      |++++|...+++..+.    +.+  | ....+..+...+...|++++|...+++.......    ....++..+...+..
T Consensus       107 G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~  186 (373)
T 1hz4_A          107 GFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLA  186 (373)
T ss_dssp             TCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHH
Confidence            6666666666655432    111  2 1234455566666666666666666655432111    112345556666666


Q ss_pred             cCCHHHHHHHHHHHHHCCCCCC--HHHHH----HHHHHHhccCcHHHHHHHHHHHHhcccch-------hHHHHHHHhhc
Q 036275          192 KKLYRRCLEIFEEMIDAGCYPD--GGTAK----VLISACSSEDQIEQVTTLVRTMHKDMKTA-------LPIYFNLYGEK  258 (271)
Q Consensus       192 ~g~~~~a~~~~~~m~~~~~~p~--~~~~~----~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-------~~~~~~~~~~~  258 (271)
                      .|++++|...+++.....-.++  .....    ..+..+...|++++|..++++..+.....       ...+..++...
T Consensus       187 ~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~  266 (373)
T 1hz4_A          187 RGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILL  266 (373)
T ss_dssp             HTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHT
T ss_pred             cCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHc
Confidence            6666666666666543210111  11111    12223456666666666666654432211       12334455666


Q ss_pred             cccccchhh
Q 036275          259 GVARSNLGQ  267 (271)
Q Consensus       259 G~~~~a~~~  267 (271)
                      |+.++|++.
T Consensus       267 g~~~~A~~~  275 (373)
T 1hz4_A          267 GEFEPAEIV  275 (373)
T ss_dssp             TCHHHHHHH
T ss_pred             CCHHHHHHH
Confidence            666665544

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=99.13  E-value=5.7e-09  Score=79.99  Aligned_cols=182  Identities=13%  Similarity=0.108  Sum_probs=106.6

Q ss_pred             chHHHHHH-hcCHHHHHHHHHHHHHcCCC-C-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCC-CCH-HHHHHHHHH
Q 036275           44 PNLFVFIF-SIYFSDAHAVFEEMKRLGIT-P-TMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLK-PDT-FVINSMLNL  118 (271)
Q Consensus        44 y~~ll~~~-~g~~~~A~~~~~~~~~~~~~-~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~-~~~-~~~~~li~~  118 (271)
                      |+.....+ .|++++|+..|+++.+.... | ....+..+..++.+.|++++|+..|+++.+.... +.. ..+..+..+
T Consensus         8 ~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~g~~   87 (225)
T 2yhc_A            8 YATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLT   87 (225)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHHHHH
Confidence            33334444 78888888888887765311 1 1356667777788888888888888777765322 111 133334444


Q ss_pred             HHc------------------cCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHhchhCCCCCCHH
Q 036275          119 YGR------------------LGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVV  180 (271)
Q Consensus       119 ~~~------------------~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~  180 (271)
                      +..                  .|+.++|...|+++.+.. |-+...+......-          .+...+        ..
T Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-P~~~~a~~a~~~l~----------~~~~~~--------~~  148 (225)
T 2yhc_A           88 NMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGY-PNSQYTTDATKRLV----------FLKDRL--------AK  148 (225)
T ss_dssp             HHHHHC--------------CCHHHHHHHHHHHHHHTTC-TTCTTHHHHHHHHH----------HHHHHH--------HH
T ss_pred             HHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHC-cCChhHHHHHHHHH----------HHHHHH--------HH
Confidence            433                  345555655555555541 22222222111000          000000        00


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHhccCcHHHHHHHHHHHHhcccc
Q 036275          181 TWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPD----GGTAKVLISACSSEDQIEQVTTLVRTMHKDMKT  246 (271)
Q Consensus       181 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~  246 (271)
                      ....+...+.+.|++++|...|+++.+.  .|+    ...+..+..++.+.|+.++|.+.++.+...++.
T Consensus       149 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~  216 (225)
T 2yhc_A          149 YEYSVAEYYTERGAWVAVVNRVEGMLRD--YPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSN  216 (225)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHH--STTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSC
T ss_pred             HHHHHHHHHHHcCcHHHHHHHHHHHHHH--CcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCC
Confidence            1134556778889999999999998875  233    246777888899999999999999988776654

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=99.13  E-value=2.5e-09  Score=80.96  Aligned_cols=169  Identities=5%  Similarity=-0.034  Sum_probs=126.7

Q ss_pred             CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHH----------------HHHHHHccCCHhHHHHHHHHH
Q 036275           73 TMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKP-DTFVINS----------------MLNLYGRLGQFEKMEEVLTAM  135 (271)
Q Consensus        73 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~-~~~~~~~----------------li~~~~~~g~~~~a~~~~~~m  135 (271)
                      ++..+......+...|++++|+..|++..+.  .| +...+..                +..++.+.|++++|+..|++.
T Consensus         3 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a   80 (208)
T 3urz_A            3 SVDEMLQKVSAAIEAGQNGQAVSYFRQTIAL--NIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKEL   80 (208)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            3444555666788999999999999999886  34 3445666                889999999999999999999


Q ss_pred             HhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCC--HHHHHHHHHHHHHCCCCCC
Q 036275          136 EKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKL--YRRCLEIFEEMIDAGCYPD  213 (271)
Q Consensus       136 ~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~--~~~a~~~~~~m~~~~~~p~  213 (271)
                      .+.. |.+...+..+..++...|++++|...|++..+.. +-+..++..+...|...|+  .+.+...++....  ..|.
T Consensus        81 l~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~--~~~~  156 (208)
T 3urz_A           81 LQKA-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSS--PTKM  156 (208)
T ss_dssp             HHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---C--CCHH
T ss_pred             HHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhC--CCch
Confidence            8874 5578899999999999999999999999998863 2357788888888876654  3445555555432  1222


Q ss_pred             HHHHHHHHHHHhccCcHHHHHHHHHHHHhcccch
Q 036275          214 GGTAKVLISACSSEDQIEQVTTLVRTMHKDMKTA  247 (271)
Q Consensus       214 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~  247 (271)
                      ...+.....++...|++++|...|++..+..+..
T Consensus       157 ~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~  190 (208)
T 3urz_A          157 QYARYRDGLSKLFTTRYEKARNSLQKVILRFPST  190 (208)
T ss_dssp             HHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCH
T ss_pred             hHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCH
Confidence            3333444555667899999999999998877653

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=99.12  E-value=2.6e-09  Score=93.28  Aligned_cols=158  Identities=8%  Similarity=-0.120  Sum_probs=121.1

Q ss_pred             cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHH
Q 036275           87 TGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGL  166 (271)
Q Consensus        87 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~  166 (271)
                      .|++++|++.+++..+.. +-+...+..+...+...|++++|.+.+++..+.. +.+...+..+..+|...|++++|.+.
T Consensus         2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~   79 (568)
T 2vsy_A            2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVL   79 (568)
T ss_dssp             --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence            478899999999988764 2357889999999999999999999999999873 45688999999999999999999999


Q ss_pred             HHhchhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc---CcHHHHHHHHHHHHhc
Q 036275          167 FQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSE---DQIEQVTTLVRTMHKD  243 (271)
Q Consensus       167 ~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~---g~~~~a~~~~~~~~~~  243 (271)
                      +++..+.. +-+...+..+...+...|++++|.+.+++..+.. +-+...+..+..++...   |+.++|.+.+++..+.
T Consensus        80 ~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~  157 (568)
T 2vsy_A           80 LQQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ  157 (568)
T ss_dssp             HHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred             HHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence            99988763 2357889999999999999999999999988864 44678888999999999   9999999999999877


Q ss_pred             ccchh
Q 036275          244 MKTAL  248 (271)
Q Consensus       244 ~~~~~  248 (271)
                      ++...
T Consensus       158 ~p~~~  162 (568)
T 2vsy_A          158 GVGAV  162 (568)
T ss_dssp             TCCCS
T ss_pred             CCccc
Confidence            66543

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=99.11  E-value=5.3e-09  Score=83.32  Aligned_cols=159  Identities=10%  Similarity=0.005  Sum_probs=117.5

Q ss_pred             CCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHhchhCCCCCCHHHHHHH
Q 036275          106 KPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSR  185 (271)
Q Consensus       106 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l  185 (271)
                      +.+...+..+...+...|++++|...|++..+.. +.+...+..+...+.+.|++++|...++++...  .|+.......
T Consensus       114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~~  190 (287)
T 3qou_A          114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ--DQDTRYQGLV  190 (287)
T ss_dssp             CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG--GCSHHHHHHH
T ss_pred             CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh--hcchHHHHHH
Confidence            3445566777778888888889988888887763 446778888888888889999999888888765  3554433222


Q ss_pred             -HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhcccch-----hHHHHHHHhhcc
Q 036275          186 -LAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKDMKTA-----LPIYFNLYGEKG  259 (271)
Q Consensus       186 -i~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-----~~~~~~~~~~~G  259 (271)
                       ...+...++.++|...+++..+.. +.+...+..+...+...|++++|...+.++.+..+..     ...+..+|...|
T Consensus       191 ~~~~l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g  269 (287)
T 3qou_A          191 AQIELLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALG  269 (287)
T ss_dssp             HHHHHHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHC
T ss_pred             HHHHHHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcC
Confidence             233566777778888888877753 4467778888888888889999988888887755433     455677788888


Q ss_pred             ccccchhhh
Q 036275          260 VARSNLGQY  268 (271)
Q Consensus       260 ~~~~a~~~~  268 (271)
                      +.++|+..|
T Consensus       270 ~~~~a~~~~  278 (287)
T 3qou_A          270 TGDALASXY  278 (287)
T ss_dssp             TTCHHHHHH
T ss_pred             CCCcHHHHH
Confidence            888887765

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=99.09  E-value=3.2e-08  Score=92.15  Aligned_cols=165  Identities=12%  Similarity=0.059  Sum_probs=86.2

Q ss_pred             HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChhhHHHHHHH
Q 036275           74 MKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINI  153 (271)
Q Consensus        74 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~  153 (271)
                      +.+|..+..++...|++++|+..|.+.      -|...|..++.++.+.|++++|.+++....+..  ++....+.++.+
T Consensus      1105 p~vWsqLAKAql~~G~~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~Lafa 1176 (1630)
T 1xi4_A         1105 PAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFA 1176 (1630)
T ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHH
Confidence            455556666666666666666665432      244455556666666666666666665554432  222222335556


Q ss_pred             HHcCCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHH
Q 036275          154 YGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQV  233 (271)
Q Consensus       154 ~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a  233 (271)
                      |++.+++++...+..       .++...|..+...|...|++++|..+|...         ..|..+..++.+.|++++|
T Consensus      1177 YAKl~rleele~fI~-------~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~A 1240 (1630)
T 1xi4_A         1177 LAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAA 1240 (1630)
T ss_pred             HHhhcCHHHHHHHHh-------CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHH
Confidence            666665554333321       234445555556666666666666666552         2566666666666666666


Q ss_pred             HHHHHHHHhcccchhHHHHHHHhhccccccc
Q 036275          234 TTLVRTMHKDMKTALPIYFNLYGEKGVARSN  264 (271)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~a  264 (271)
                      .+.+++.  .+...|...-.++...|.++.|
T Consensus      1241 IEaarKA--~n~~aWkev~~acve~~Ef~LA 1269 (1630)
T 1xi4_A         1241 VDGARKA--NSTRTWKEVCFACVDGKEFRLA 1269 (1630)
T ss_pred             HHHHHHh--CCHHHHHHHHHHHhhhhHHHHH
Confidence            6666655  2223333333334444443333

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=99.08  E-value=1.7e-09  Score=79.59  Aligned_cols=151  Identities=9%  Similarity=-0.032  Sum_probs=86.9

Q ss_pred             hcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHccCCHhHHHH
Q 036275           52 SIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNL-YGRLGQFEKMEE  130 (271)
Q Consensus        52 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~-~~~~g~~~~a~~  130 (271)
                      .|++++|...|++..+.. |.+...+..+...+.+.|++++|+..+++..+..  |+...+..+... +...+...+|..
T Consensus        19 ~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~~~~~~~~~a~~   95 (176)
T 2r5s_A           19 QGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLIAKLELHQQAAESPELK   95 (176)
T ss_dssp             TTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHHHHHHHHHHTSCHHHH
T ss_pred             cCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHHHHHHHhhcccchHHH
Confidence            677777777777665543 4456666777777777777777777776665542  233332222111 112222234566


Q ss_pred             HHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHhchhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 036275          131 VLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP-DVVTWTSRLAAYSRKKLYRRCLEIFEEMI  206 (271)
Q Consensus       131 ~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~  206 (271)
                      .+++..+.. +.+...+..+..++...|++++|...|+++.+....+ +...+..+...+...|+.++|...|++..
T Consensus        96 ~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~al  171 (176)
T 2r5s_A           96 RLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYRRQL  171 (176)
T ss_dssp             HHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHHH
T ss_pred             HHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHHHHH
Confidence            666665542 3345666666666777777777777776666553221 23456666666666666666666666543

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=99.07  E-value=6.1e-09  Score=86.16  Aligned_cols=196  Identities=13%  Similarity=-0.013  Sum_probs=146.6

Q ss_pred             chHHHHHH--hcCHHHHHHHHHHHHHcC--CC----CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC----CCCC-CHH
Q 036275           44 PNLFVFIF--SIYFSDAHAVFEEMKRLG--IT----PTMKSHMLLLTAYSKTGNVAKCEGVINQMHKS----GLKP-DTF  110 (271)
Q Consensus        44 y~~ll~~~--~g~~~~A~~~~~~~~~~~--~~----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----~~~~-~~~  110 (271)
                      |..+-..|  .|+++.|...+.+..+..  ..    ....+++.+...|...|++++|.+.+++..+.    +..+ ...
T Consensus       144 ~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~  223 (378)
T 3q15_A          144 HFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAI  223 (378)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence            55566666  999999999999886531  11    13567888999999999999999999887653    2111 234


Q ss_pred             HHHHHHHHHHccCCHhHHHHHHHHHHh-----CCCCCChhhHHHHHHHHHcCCCHHHHHHHHHhchhCC----CCCCHHH
Q 036275          111 VINSMLNLYGRLGQFEKMEEVLTAMEK-----GSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR----LKPDVVT  181 (271)
Q Consensus       111 ~~~~li~~~~~~g~~~~a~~~~~~m~~-----~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g----~~~~~~~  181 (271)
                      ++..+...|...|++++|.+.+++..+     . .+....++..+...+.+.|++++|...+++.....    -+.....
T Consensus       224 ~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~  302 (378)
T 3q15_A          224 SLLNIANSYDRSGDDQMAVEHFQKAAKVSREKV-PDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKEL  302 (378)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHC-GGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhC-ChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence            688899999999999999999998876     3 23347788899999999999999999999876531    1222345


Q ss_pred             HHHHHHHHHhcCC---HHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHHHhc
Q 036275          182 WTSRLAAYSRKKL---YRRCLEIFEEMIDAGCYPD-GGTAKVLISACSSEDQIEQVTTLVRTMHKD  243 (271)
Q Consensus       182 ~~~li~~~~~~g~---~~~a~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~  243 (271)
                      +..+...+...++   ..+|...+++   .+..|+ ...+..+...+...|++++|...+++..+.
T Consensus       303 ~~~l~~ly~~~~~~~~~~~al~~~~~---~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~  365 (378)
T 3q15_A          303 FLFLQAVYKETVDERKIHDLLSYFEK---KNLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLKA  365 (378)
T ss_dssp             HHHHHHHHSSSCCHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCCcHHHHHHHHHHHHh---CCChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence            5666666777788   6667666665   332333 345667888899999999999999988653

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=99.07  E-value=2.4e-08  Score=76.42  Aligned_cols=143  Identities=8%  Similarity=0.078  Sum_probs=93.0

Q ss_pred             chHHHHHH--hcCHHHHHHHHHHHHHcCCCCCH---HHHHHHHHHHHh------------------cCChHHHHHHHHHH
Q 036275           44 PNLFVFIF--SIYFSDAHAVFEEMKRLGITPTM---KSHMLLLTAYSK------------------TGNVAKCEGVINQM  100 (271)
Q Consensus        44 y~~ll~~~--~g~~~~A~~~~~~~~~~~~~~~~---~~~~~li~~~~~------------------~~~~~~a~~~~~~m  100 (271)
                      +..+..+|  .|++++|++.|+++.+.. |-+.   ..+..+..++.+                  .|+.++|+..|+++
T Consensus        44 ~~~lg~~~~~~~~~~~A~~~~~~~l~~~-P~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~  122 (225)
T 2yhc_A           44 QLDLIYAYYKNADLPLAQAAIDRFIRLN-PTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKL  122 (225)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTHHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHHC-cCCCcHHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHH
Confidence            33344555  999999999999998874 2222   245555555554                  57899999999999


Q ss_pred             HHCCCCCCH-HHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHhchhCCCCCC-
Q 036275          101 HKSGLKPDT-FVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPD-  178 (271)
Q Consensus       101 ~~~~~~~~~-~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~-  178 (271)
                      .+..  |+. ..+......          ..+...+.        .....+...|.+.|++++|...|+++.+.  .|+ 
T Consensus       123 l~~~--P~~~~a~~a~~~l----------~~~~~~~~--------~~~~~~a~~~~~~~~~~~A~~~~~~~l~~--~p~~  180 (225)
T 2yhc_A          123 VRGY--PNSQYTTDATKRL----------VFLKDRLA--------KYEYSVAEYYTERGAWVAVVNRVEGMLRD--YPDT  180 (225)
T ss_dssp             HTTC--TTCTTHHHHHHHH----------HHHHHHHH--------HHHHHHHHHHHHHTCHHHHHHHHHHHHHH--STTS
T ss_pred             HHHC--cCChhHHHHHHHH----------HHHHHHHH--------HHHHHHHHHHHHcCcHHHHHHHHHHHHHH--CcCC
Confidence            9873  332 222221110          00111110        11234567788888888888888887765  233 


Q ss_pred             ---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 036275          179 ---VVTWTSRLAAYSRKKLYRRCLEIFEEMIDAG  209 (271)
Q Consensus       179 ---~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~  209 (271)
                         ...+..+..++.+.|+.++|.+.++.+...+
T Consensus       181 ~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~  214 (225)
T 2yhc_A          181 QATRDALPLMENAYRQMQMNAQAEKVAKIIAANS  214 (225)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCC
T ss_pred             CccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC
Confidence               2467778888888888888888888877763

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=99.06  E-value=5.2e-09  Score=83.40  Aligned_cols=167  Identities=10%  Similarity=-0.043  Sum_probs=131.3

Q ss_pred             CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChhhH-HH
Q 036275           71 TPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTY-NI  149 (271)
Q Consensus        71 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~-~~  149 (271)
                      +.+...+..+...+.+.|++++|...|++..+... -+...+..+...+...|++++|...++++...  .|+.... ..
T Consensus       114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~~  190 (287)
T 3qou_A          114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLSN-QNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ--DQDTRYQGLV  190 (287)
T ss_dssp             CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT-SCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG--GCSHHHHHHH
T ss_pred             CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCC-cchhHHHHHHHHHHHCCCHHHHHHHHHhCchh--hcchHHHHHH
Confidence            55667788888889999999999999999888742 36677888999999999999999999988765  3454333 23


Q ss_pred             HHHHHHcCCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHhccC
Q 036275          150 LINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCY-PDGGTAKVLISACSSED  228 (271)
Q Consensus       150 li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~-p~~~~~~~l~~~~~~~g  228 (271)
                      ....+...++.++|.+.+++..... +.+...+..+...+...|++++|...+.+..+..-. .+...+..+...+...|
T Consensus       191 ~~~~l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g  269 (287)
T 3qou_A          191 AQIELLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALG  269 (287)
T ss_dssp             HHHHHHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHC
T ss_pred             HHHHHHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcC
Confidence            3334667788888999998887763 335788899999999999999999999998875311 12667888999999999


Q ss_pred             cHHHHHHHHHHHH
Q 036275          229 QIEQVTTLVRTMH  241 (271)
Q Consensus       229 ~~~~a~~~~~~~~  241 (271)
                      +.++|...+++..
T Consensus       270 ~~~~a~~~~r~al  282 (287)
T 3qou_A          270 TGDALASXYRRQL  282 (287)
T ss_dssp             TTCHHHHHHHHHH
T ss_pred             CCCcHHHHHHHHH
Confidence            9999888887654

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=99.05  E-value=1.5e-09  Score=77.81  Aligned_cols=118  Identities=7%  Similarity=-0.060  Sum_probs=59.7

Q ss_pred             hcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHhHHHHH
Q 036275           52 SIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEV  131 (271)
Q Consensus        52 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~  131 (271)
                      .|++++|++.+....... +-+...+..+...|.+.|++++|++.|++..+... -+...|..+..++.+.|++++|+..
T Consensus        10 ~~~~e~ai~~~~~a~~~~-p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~~~~~~A~~~   87 (150)
T 4ga2_A           10 KADVERYIASVQGSTPSP-RQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQE-RDPKAHRFLGLLYELEENTDKAVEC   87 (150)
T ss_dssp             HHHHHHHHHHHHHHSCSH-HHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             cChHHHHHHHHHHhcccC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCchHHHHHH
Confidence            455555555555543321 12233444455555555666666655555555431 2445555555555555555555555


Q ss_pred             HHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHH-HHhchh
Q 036275          132 LTAMEKGSYAADISTYNILINIYGRGGFIEKMEGL-FQSLPA  172 (271)
Q Consensus       132 ~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~-~~~m~~  172 (271)
                      |++..+.. +.+..++..+...|.+.|++++|.+. +++..+
T Consensus        88 ~~~al~~~-p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~  128 (150)
T 4ga2_A           88 YRRSVELN-PTQKDLVLKIAELLCKNDVTDGRAKYWVERAAK  128 (150)
T ss_dssp             HHHHHHHC-TTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHH
T ss_pred             HHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence            55555542 23345555555555555555444333 344443

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=99.03  E-value=5.2e-09  Score=88.88  Aligned_cols=213  Identities=11%  Similarity=-0.028  Sum_probs=129.1

Q ss_pred             hcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHhH
Q 036275           52 SIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSK----TGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEK  127 (271)
Q Consensus        52 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~  127 (271)
                      .++.++|++.+++..+.+ +.+..++..+...+..    .++.++|.+.+++..... +.+...+..+...|...|++++
T Consensus       188 ~~~~~~al~~~~~al~l~-p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~  265 (472)
T 4g1t_A          188 WPPSQNAIDPLRQAIRLN-PDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDK  265 (472)
T ss_dssp             SCCCCCTHHHHHHHHHHC-SSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHH
T ss_pred             chHHHHHHHHHHHHhhcC-CcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHH
Confidence            677777888887777765 4566666666555544    356677888887776654 3356667777888888888888


Q ss_pred             HHHHHHHHHhCCCCCChhhHHHHHHHHHcC-------------------CCHHHHHHHHHhchhCCCCCCHHHHHHHHHH
Q 036275          128 MEEVLTAMEKGSYAADISTYNILINIYGRG-------------------GFIEKMEGLFQSLPAKRLKPDVVTWTSRLAA  188 (271)
Q Consensus       128 a~~~~~~m~~~~~~~~~~~~~~li~~~~~~-------------------g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~  188 (271)
                      |.+.+++..+.. |.+..++..+...|...                   +..++|...+++..... +.+..++..+...
T Consensus       266 A~~~~~~al~~~-p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~  343 (472)
T 4g1t_A          266 AIELLKKALEYI-PNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASL  343 (472)
T ss_dssp             HHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHH
T ss_pred             HHHHHHHHHHhC-CChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHH
Confidence            888888777652 34456666665555322                   23566777777766542 2234567777777


Q ss_pred             HHhcCCHHHHHHHHHHHHHCCCCCCHH--HHHHHHH-HHhccCcHHHHHHHHHHHHhc----------------------
Q 036275          189 YSRKKLYRRCLEIFEEMIDAGCYPDGG--TAKVLIS-ACSSEDQIEQVTTLVRTMHKD----------------------  243 (271)
Q Consensus       189 ~~~~g~~~~a~~~~~~m~~~~~~p~~~--~~~~l~~-~~~~~g~~~~a~~~~~~~~~~----------------------  243 (271)
                      +...|++++|...|++..+....+...  .+..+.. .....|+.++|...+++..+-                      
T Consensus       344 ~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~~~~~l~~~~~~~l  423 (472)
T 4g1t_A          344 HALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKMKDKLQKIAKMRL  423 (472)
T ss_dssp             HHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHH
Confidence            888888888888888777654222221  1222222 234567777777777665432                      


Q ss_pred             --c---cchhHHHHHHHhhccccccchhhh
Q 036275          244 --M---KTALPIYFNLYGEKGVARSNLGQY  268 (271)
Q Consensus       244 --~---~~~~~~~~~~~~~~G~~~~a~~~~  268 (271)
                        +   ...+..+-.+|...|+.++|++.|
T Consensus       424 ~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y  453 (472)
T 4g1t_A          424 SKNGADSEALHVLAFLQELNEKMQQADEDS  453 (472)
T ss_dssp             HHCC-CTTHHHHHHHHHHHHHHCC------
T ss_pred             HhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence              1   223445666789999999998876

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=99.03  E-value=2.3e-08  Score=79.62  Aligned_cols=146  Identities=12%  Similarity=0.117  Sum_probs=112.4

Q ss_pred             HHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCC-CCChhhHHHHHHHHHcCCCHHHHHHHHHhch
Q 036275           93 CEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSY-AADISTYNILINIYGRGGFIEKMEGLFQSLP  171 (271)
Q Consensus        93 a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~  171 (271)
                      |+..+++..+.+ .++..++..+..++...|+.++|++++.+....+- .-+...+..++..+.+.|+.+.|.+.+++|.
T Consensus        85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~  163 (310)
T 3mv2_B           85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT  163 (310)
T ss_dssp             CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            444555555544 45666667888999999999999999999877652 1367888899999999999999999999998


Q ss_pred             hCCCCC-----CHHHHHHHHHHH--HhcC--CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHh
Q 036275          172 AKRLKP-----DVVTWTSRLAAY--SRKK--LYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHK  242 (271)
Q Consensus       172 ~~g~~~-----~~~~~~~li~~~--~~~g--~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~  242 (271)
                      +.  .|     +..+...+..++  ...|  +..+|..+|+++.+.  .|+..+-..++.++.+.|++++|.+.++.+.+
T Consensus       164 ~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~  239 (310)
T 3mv2_B          164 NA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLS  239 (310)
T ss_dssp             HH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHS
T ss_pred             hc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            76  55     356677777663  3334  899999999998765  46644444555588999999999999998765


Q ss_pred             c
Q 036275          243 D  243 (271)
Q Consensus       243 ~  243 (271)
                      .
T Consensus       240 ~  240 (310)
T 3mv2_B          240 D  240 (310)
T ss_dssp             H
T ss_pred             h
Confidence            4

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=99.03  E-value=3.4e-09  Score=94.52  Aligned_cols=171  Identities=7%  Similarity=-0.116  Sum_probs=140.3

Q ss_pred             HhcCChHHHHHHHHHHH--------HCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHc
Q 036275           85 SKTGNVAKCEGVINQMH--------KSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGR  156 (271)
Q Consensus        85 ~~~~~~~~a~~~~~~m~--------~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~  156 (271)
                      ...|++++|++.+++..        +.. +.+...+..+...+...|++++|++.+++..+.. +.+...|..+..++..
T Consensus       402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~  479 (681)
T 2pzi_A          402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELL  479 (681)
T ss_dssp             TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHH
T ss_pred             ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHH
Confidence            67899999999999998        432 3356778889999999999999999999998863 5578899999999999


Q ss_pred             CCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHH
Q 036275          157 GGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTL  236 (271)
Q Consensus       157 ~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~  236 (271)
                      .|++++|.+.|++..+.. +-+...|..+..++.+.|++++ ...|++..+.+ +-+...+..+..++...|++++|.+.
T Consensus       480 ~g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~  556 (681)
T 2pzi_A          480 TGDYDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTVWSTN-DGVISAAFGLARARSAEGDRVGAVRT  556 (681)
T ss_dssp             HTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-CchHHHHHHHHHHHHHcCCHHHHHHH
Confidence            999999999999988763 2256789999999999999999 99999988864 44678899999999999999999999


Q ss_pred             HHHHHhcccchhHHH---HHHHhhccc
Q 036275          237 VRTMHKDMKTALPIY---FNLYGEKGV  260 (271)
Q Consensus       237 ~~~~~~~~~~~~~~~---~~~~~~~G~  260 (271)
                      +++..+.++......   ..+|...|.
T Consensus       557 ~~~al~l~P~~~~a~~~~~~~~~~~~~  583 (681)
T 2pzi_A          557 LDEVPPTSRHFTTARLTSAVTLLSGRS  583 (681)
T ss_dssp             HHTSCTTSTTHHHHHHHHHHHTC----
T ss_pred             HHhhcccCcccHHHHHHHHHHHHccCC
Confidence            999988776654444   334555444

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=99.02  E-value=1.1e-09  Score=78.44  Aligned_cols=144  Identities=8%  Similarity=-0.029  Sum_probs=96.6

Q ss_pred             HHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCC
Q 036275           81 LTAYSKTGNVAKCEGVINQMHKSGLKPD-TFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGF  159 (271)
Q Consensus        81 i~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~  159 (271)
                      ...+...|++++|+..+++....  .|+ ...+-.+...|.+.|++++|++.|++..+.. +.+..+|..+..+|.+.|+
T Consensus         4 G~~~~~~~~~e~ai~~~~~a~~~--~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~   80 (150)
T 4ga2_A            4 GSMRRSKADVERYIASVQGSTPS--PRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ-ERDPKAHRFLGLLYELEEN   80 (150)
T ss_dssp             ---CCCHHHHHHHHHHHHHHSCS--HHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHcChHHHHHHHHHHhccc--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCc
Confidence            34445567778888877776654  232 2345567778888888888888888887763 4467788888888888888


Q ss_pred             HHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH-HHHHHHCCCCCCHHHHHHHHHHHhccCc
Q 036275          160 IEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEI-FEEMIDAGCYPDGGTAKVLISACSSEDQ  229 (271)
Q Consensus       160 ~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~-~~~m~~~~~~p~~~~~~~l~~~~~~~g~  229 (271)
                      +++|...|++..+.. +-+..+|..+...|.+.|++++|.+. +++..+.. +-+..+|....+.+...|+
T Consensus        81 ~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~-P~~~~~~~l~~~ll~~~G~  149 (150)
T 4ga2_A           81 TDKAVECYRRSVELN-PTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLF-PGSPAVYKLKEQLLDCEGE  149 (150)
T ss_dssp             HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTCCC
T ss_pred             hHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCc
Confidence            888888888877652 12466778888888888887765554 46666542 3345566655555555553

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=98.98  E-value=1.5e-08  Score=81.44  Aligned_cols=162  Identities=8%  Similarity=-0.014  Sum_probs=80.5

Q ss_pred             chHHHHHH--hcCHHHHHHHHHHHHHcC----CC-CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCC---CCCC--HHH
Q 036275           44 PNLFVFIF--SIYFSDAHAVFEEMKRLG----IT-PTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSG---LKPD--TFV  111 (271)
Q Consensus        44 y~~ll~~~--~g~~~~A~~~~~~~~~~~----~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~---~~~~--~~~  111 (271)
                      |+.....|  .|++++|.+.|.+..+..    -+ .-..+|+.+...|...|++++|+..|++..+..   -.+.  ..+
T Consensus        39 ~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~  118 (307)
T 2ifu_A           39 YAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMA  118 (307)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence            33444444  566666666666554321    00 013355555566666666666666665544320   0111  234


Q ss_pred             HHHHHHHHHccCCHhHHHHHHHHHHhC----CCCC-ChhhHHHHHHHHHcCCCHHHHHHHHHhchhC----CCCCC-HHH
Q 036275          112 INSMLNLYGRLGQFEKMEEVLTAMEKG----SYAA-DISTYNILINIYGRGGFIEKMEGLFQSLPAK----RLKPD-VVT  181 (271)
Q Consensus       112 ~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~~~-~~~  181 (271)
                      +..+...|.. |++++|++.+++..+.    +... ...++..+...|.+.|++++|...|++....    +..++ ..+
T Consensus       119 ~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~  197 (307)
T 2ifu_A          119 LDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKK  197 (307)
T ss_dssp             HHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHH
Confidence            5555555555 6666666666655432    1000 1345555666666666666666666655431    11111 124


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHH
Q 036275          182 WTSRLAAYSRKKLYRRCLEIFEEMI  206 (271)
Q Consensus       182 ~~~li~~~~~~g~~~~a~~~~~~m~  206 (271)
                      +..+...+...|++++|...|++..
T Consensus       198 ~~~~g~~~~~~g~~~~A~~~~~~al  222 (307)
T 2ifu_A          198 CIAQVLVQLHRADYVAAQKCVRESY  222 (307)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHh
Confidence            4444455555566666666666655

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=98.98  E-value=1.2e-08  Score=75.05  Aligned_cols=161  Identities=14%  Similarity=0.107  Sum_probs=95.7

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChhhHHHHHHH-H
Q 036275           76 SHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINI-Y  154 (271)
Q Consensus        76 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~-~  154 (271)
                      .+..+...+.+.|++++|...|++..+.. +-+...+..+...+...|++++|+..++...+..  |+...+..+... +
T Consensus         8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~   84 (176)
T 2r5s_A            8 QLLKQVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLIAKLEL   84 (176)
T ss_dssp             THHHHHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHHHHHH
Confidence            34455666677777777777777665542 2245566677777777777777777777665542  233333222211 1


Q ss_pred             HcCCCHHHHHHHHHhchhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCcHHH
Q 036275          155 GRGGFIEKMEGLFQSLPAKRLKP-DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYP-DGGTAKVLISACSSEDQIEQ  232 (271)
Q Consensus       155 ~~~g~~~~a~~~~~~m~~~g~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~  232 (271)
                      ...+...+|...+++..+.  .| +...+..+...+...|++++|...|++..+..-.+ +...+..+...+...|+.++
T Consensus        85 ~~~~~~~~a~~~~~~al~~--~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~  162 (176)
T 2r5s_A           85 HQQAAESPELKRLEQELAA--NPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNA  162 (176)
T ss_dssp             HHHHTSCHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCH
T ss_pred             HhhcccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCc
Confidence            1222233456666666554  23 45667777777777777777777777766653221 24466666677777777777


Q ss_pred             HHHHHHHHH
Q 036275          233 VTTLVRTMH  241 (271)
Q Consensus       233 a~~~~~~~~  241 (271)
                      |...|++..
T Consensus       163 A~~~y~~al  171 (176)
T 2r5s_A          163 IASKYRRQL  171 (176)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            777766543

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=98.95  E-value=9.3e-08  Score=72.11  Aligned_cols=124  Identities=9%  Similarity=0.001  Sum_probs=58.3

Q ss_pred             HHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCC
Q 036275           80 LLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGF  159 (271)
Q Consensus        80 li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~  159 (271)
                      +...+...|++++|...|++..    .|+...+..+...+...|++++|.+.+++..+.. +.+...+..+..+|...|+
T Consensus        12 ~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~   86 (213)
T 1hh8_A           12 EGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEK   86 (213)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHccc
Confidence            3344444455555554444432    3344444445555555555555555554444432 2334444445555555555


Q ss_pred             HHHHHHHHHhchhCCC--------------CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 036275          160 IEKMEGLFQSLPAKRL--------------KP-DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDA  208 (271)
Q Consensus       160 ~~~a~~~~~~m~~~g~--------------~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~  208 (271)
                      +++|.+.|++..+...              .| ....+..+..++...|++++|...+++..+.
T Consensus        87 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~  150 (213)
T 1hh8_A           87 YDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM  150 (213)
T ss_dssp             HHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHc
Confidence            5555555554443210              01 1144555555555555555555555555543

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=98.95  E-value=1.3e-07  Score=75.38  Aligned_cols=163  Identities=12%  Similarity=0.050  Sum_probs=122.8

Q ss_pred             HHHHHHhcCChHHHHHHHHHHHHCCC-CCCH----HHHHHHHHHHHccCCHhHHHHHHHHHHhCCCC-CC----hhhHHH
Q 036275           80 LLTAYSKTGNVAKCEGVINQMHKSGL-KPDT----FVINSMLNLYGRLGQFEKMEEVLTAMEKGSYA-AD----ISTYNI  149 (271)
Q Consensus        80 li~~~~~~~~~~~a~~~~~~m~~~~~-~~~~----~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~-~~----~~~~~~  149 (271)
                      .+..+...|++++|..++++..+... .|+.    ..+..+...+...|++++|+..+++..+.... ++    ..+++.
T Consensus        81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~  160 (293)
T 3u3w_A           81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA  160 (293)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred             HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence            46778889999999999999887532 2332    23445777778888999999999999874222 22    236899


Q ss_pred             HHHHHHcCCCHHHHHHHHHhchh----C-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHH----CCCCCC-HHHHH
Q 036275          150 LINIYGRGGFIEKMEGLFQSLPA----K-RLKPD-VVTWTSRLAAYSRKKLYRRCLEIFEEMID----AGCYPD-GGTAK  218 (271)
Q Consensus       150 li~~~~~~g~~~~a~~~~~~m~~----~-g~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~----~~~~p~-~~~~~  218 (271)
                      +..+|...|++++|...|+++.+    . +..+. ..+|..+...|...|++++|...+++..+    .+..+. ..+|.
T Consensus       161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~  240 (293)
T 3u3w_A          161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY  240 (293)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence            99999999999999999998773    1 11222 24788899999999999999999988664    332333 56888


Q ss_pred             HHHHHHhccC-cHHHHHHHHHHHHh
Q 036275          219 VLISACSSED-QIEQVTTLVRTMHK  242 (271)
Q Consensus       219 ~l~~~~~~~g-~~~~a~~~~~~~~~  242 (271)
                      .+..++...| +.++|.+.+++...
T Consensus       241 ~lg~~~~~~g~~~~~A~~~~~~Al~  265 (293)
T 3u3w_A          241 QRGECLRKLEYEEAEIEDAYKKASF  265 (293)
T ss_dssp             HHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCcHHHHHHHHHHHHH
Confidence            8888999999 46999999988754

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=98.92  E-value=9.7e-08  Score=71.99  Aligned_cols=124  Identities=12%  Similarity=0.057  Sum_probs=105.6

Q ss_pred             hHHHHHH-hcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC
Q 036275           45 NLFVFIF-SIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLG  123 (271)
Q Consensus        45 ~~ll~~~-~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g  123 (271)
                      +.-...+ .|++++|.+.|++.    +.|+...|..+...+...|++++|+..|++..+.. +.+...+..+..++...|
T Consensus        11 ~~g~~~~~~~~~~~A~~~~~~a----~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~~   85 (213)
T 1hh8_A           11 NEGVLAADKKDWKGALDAFSAV----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTE   85 (213)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHTS----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHhCCHHHHHHHHHHH----cCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcc
Confidence            3333334 99999999999876    36788999999999999999999999999998875 346788999999999999


Q ss_pred             CHhHHHHHHHHHHhCCCCCC----------------hhhHHHHHHHHHcCCCHHHHHHHHHhchhCC
Q 036275          124 QFEKMEEVLTAMEKGSYAAD----------------ISTYNILINIYGRGGFIEKMEGLFQSLPAKR  174 (271)
Q Consensus       124 ~~~~a~~~~~~m~~~~~~~~----------------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g  174 (271)
                      ++++|.+.|++..+.. +.+                ...+..+..+|.+.|++++|.+.|++..+..
T Consensus        86 ~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~  151 (213)
T 1hh8_A           86 KYDLAIKDLKEALIQL-RGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK  151 (213)
T ss_dssp             CHHHHHHHHHHHHHTT-TTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred             cHHHHHHHHHHHHHhC-CCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcC
Confidence            9999999999998852 222                2788899999999999999999999988763

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=98.92  E-value=3.5e-07  Score=69.30  Aligned_cols=157  Identities=11%  Similarity=0.019  Sum_probs=129.2

Q ss_pred             chHHHHHH--hcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC----ChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 036275           44 PNLFVFIF--SIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTG----NVAKCEGVINQMHKSGLKPDTFVINSMLN  117 (271)
Q Consensus        44 y~~ll~~~--~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~----~~~~a~~~~~~m~~~~~~~~~~~~~~li~  117 (271)
                      +..+-..|  .+++++|.+.|++..+.|   ++..+..|...|.. +    +.++|+.+|++..+.|   +...+..|..
T Consensus        21 ~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~g---~~~a~~~Lg~   93 (212)
T 3rjv_A           21 QYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAVEAG---SKSGEIVLAR   93 (212)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHH
Confidence            44455555  999999999999998876   67788888888887 6    8999999999998875   6677888888


Q ss_pred             HHHc----cCCHhHHHHHHHHHHhCCCC-CChhhHHHHHHHHHc----CCCHHHHHHHHHhchhCCCCCCHHHHHHHHHH
Q 036275          118 LYGR----LGQFEKMEEVLTAMEKGSYA-ADISTYNILINIYGR----GGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAA  188 (271)
Q Consensus       118 ~~~~----~g~~~~a~~~~~~m~~~~~~-~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~  188 (271)
                      .|..    .+++++|.+.|++..+.|.. .++..+..|...|..    .+++++|...|++..+.  ..+...+..|...
T Consensus        94 ~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~--~~~~~a~~~Lg~~  171 (212)
T 3rjv_A           94 VLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL--SRTGYAEYWAGMM  171 (212)
T ss_dssp             HHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT--SCTTHHHHHHHHH
T ss_pred             HHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc--CCCHHHHHHHHHH
Confidence            8887    88999999999999987621 127888899999988    88999999999999876  2355577778777


Q ss_pred             HHhc-C-----CHHHHHHHHHHHHHCC
Q 036275          189 YSRK-K-----LYRRCLEIFEEMIDAG  209 (271)
Q Consensus       189 ~~~~-g-----~~~~a~~~~~~m~~~~  209 (271)
                      |... |     +.++|...|+...+.|
T Consensus       172 y~~g~gg~~~~d~~~A~~~~~~A~~~g  198 (212)
T 3rjv_A          172 FQQGEKGFIEPNKQKALHWLNVSCLEG  198 (212)
T ss_dssp             HHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred             HHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence            7653 3     8999999999988877

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=98.91  E-value=1.8e-06  Score=73.15  Aligned_cols=194  Identities=13%  Similarity=0.087  Sum_probs=128.6

Q ss_pred             chHHHHHH--hc---CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc----CChHHHHHHHHHHHHCCCCCCHHHHHH
Q 036275           44 PNLFVFIF--SI---YFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKT----GNVAKCEGVINQMHKSGLKPDTFVINS  114 (271)
Q Consensus        44 y~~ll~~~--~g---~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~----~~~~~a~~~~~~m~~~~~~~~~~~~~~  114 (271)
                      +..+-..|  .|   ++++|++.|++..+.| +++...+..+...|...    ++.++|+.+|++.. .|   +...+..
T Consensus       179 ~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-~g---~~~a~~~  253 (452)
T 3e4b_A          179 YVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA-PG---YPASWVS  253 (452)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-GG---STHHHHH
T ss_pred             HHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-CC---CHHHHHH
Confidence            44444455  66   7888888888887776 55666656666666554    67888888887776 32   4445555


Q ss_pred             HHHH-H--HccCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCC-----CHHHHHHHHHhchhCCCCCCHHHHHHHH
Q 036275          115 MLNL-Y--GRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGG-----FIEKMEGLFQSLPAKRLKPDVVTWTSRL  186 (271)
Q Consensus       115 li~~-~--~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g-----~~~~a~~~~~~m~~~g~~~~~~~~~~li  186 (271)
                      +... +  ...++.++|.+.|++..+.|   +...+..|...|. .|     ++++|.+.|++.. .|   +...+..|.
T Consensus       254 Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-~g---~~~A~~~Lg  325 (452)
T 3e4b_A          254 LAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-GR---EVAADYYLG  325 (452)
T ss_dssp             HHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-TT---CHHHHHHHH
T ss_pred             HHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-CC---CHHHHHHHH
Confidence            5555 3  45778888888888887766   5666667777776 44     7888888888777 33   566777777


Q ss_pred             HHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc----cCcHHHHHHHHHHHHhcccchhHHHHH
Q 036275          187 AAYSR----KKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSS----EDQIEQVTTLVRTMHKDMKTALPIYFN  253 (271)
Q Consensus       187 ~~~~~----~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~  253 (271)
                      ..|..    ..++++|...|++..+.|. |+  ....|...|..    ..+.++|..+++...+.+.......+.
T Consensus       326 ~~y~~G~g~~~d~~~A~~~~~~Aa~~g~-~~--A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~~~a~~~l~  397 (452)
T 3e4b_A          326 QIYRRGYLGKVYPQKALDHLLTAARNGQ-NS--ADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDTPEANDLAT  397 (452)
T ss_dssp             HHHHTTTTSSCCHHHHHHHHHHHHTTTC-TT--HHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred             HHHHCCCCCCcCHHHHHHHHHHHHhhCh-HH--HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence            66665    3478888888888777662 33  33344444442    457888888888877766554443333

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=98.91  E-value=4.2e-08  Score=78.81  Aligned_cols=177  Identities=7%  Similarity=0.000  Sum_probs=133.1

Q ss_pred             hcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHccCCHh
Q 036275           52 SIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKS----GLKP-DTFVINSMLNLYGRLGQFE  126 (271)
Q Consensus        52 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----~~~~-~~~~~~~li~~~~~~g~~~  126 (271)
                      .++++.|...|.+.               ...|...|++++|...|.+..+.    +-.+ -..+|+.+...|...|+++
T Consensus        29 ~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~   93 (307)
T 2ifu_A           29 KPDYDSAASEYAKA---------------AVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMP   93 (307)
T ss_dssp             SCCHHHHHHHHHHH---------------HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGG
T ss_pred             CCCHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHH
Confidence            57888888888765               45677889999999999887653    2111 1357888999999999999


Q ss_pred             HHHHHHHHHHhC----CCCC-ChhhHHHHHHHHHcCCCHHHHHHHHHhchhC----CCCC-CHHHHHHHHHHHHhcCCHH
Q 036275          127 KMEEVLTAMEKG----SYAA-DISTYNILINIYGRGGFIEKMEGLFQSLPAK----RLKP-DVVTWTSRLAAYSRKKLYR  196 (271)
Q Consensus       127 ~a~~~~~~m~~~----~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~~-~~~~~~~li~~~~~~g~~~  196 (271)
                      +|+..+++..+.    |-+. ...++..+...|.. |++++|++.|++....    |-.+ ...++..+...+...|+++
T Consensus        94 ~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~  172 (307)
T 2ifu_A           94 EAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFD  172 (307)
T ss_dssp             GGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHH
Confidence            999999886543    2111 24678889999988 9999999999987643    1111 1457889999999999999


Q ss_pred             HHHHHHHHHHHC----CCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHHHhccc
Q 036275          197 RCLEIFEEMIDA----GCYPD-GGTAKVLISACSSEDQIEQVTTLVRTMHKDMK  245 (271)
Q Consensus       197 ~a~~~~~~m~~~----~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~  245 (271)
                      +|...|++..+.    +..++ ...+..+..++...|++++|...+++.. ..+
T Consensus       173 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p  225 (307)
T 2ifu_A          173 EAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-SIP  225 (307)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TST
T ss_pred             HHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-CCC
Confidence            999999987752    22222 2356667777888899999999999987 443

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=98.89  E-value=1.4e-07  Score=67.85  Aligned_cols=95  Identities=9%  Similarity=-0.070  Sum_probs=47.6

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHH
Q 036275           76 SHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYG  155 (271)
Q Consensus        76 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~  155 (271)
                      .+..+...+...|++++|...|++..+.. +.+...+..+...+...|++++|.+.+++..+.. +.+...+..+..++.
T Consensus        15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~   92 (166)
T 1a17_A           15 ELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNM   92 (166)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHH
Confidence            34444455555555555555555554432 1234445555555555555555555555554432 233444555555555


Q ss_pred             cCCCHHHHHHHHHhchh
Q 036275          156 RGGFIEKMEGLFQSLPA  172 (271)
Q Consensus       156 ~~g~~~~a~~~~~~m~~  172 (271)
                      ..|++++|.+.|++...
T Consensus        93 ~~~~~~~A~~~~~~a~~  109 (166)
T 1a17_A           93 ALGKFRAALRDYETVVK  109 (166)
T ss_dssp             HTTCHHHHHHHHHHHHH
T ss_pred             HhccHHHHHHHHHHHHH
Confidence            55555555555555444

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=98.89  E-value=2.2e-08  Score=73.47  Aligned_cols=119  Identities=9%  Similarity=0.014  Sum_probs=86.3

Q ss_pred             hcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHccCCH--hHH
Q 036275           52 SIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNL-YGRLGQF--EKM  128 (271)
Q Consensus        52 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~-~~~~g~~--~~a  128 (271)
                      .|++++|...+++..+.. +.+...|..+...+...|++++|...|++..+.. +.+...+..+..+ +...|++  ++|
T Consensus        23 ~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~~~A  100 (177)
T 2e2e_A           23 QQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMTAQT  100 (177)
T ss_dssp             ----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCCHHH
T ss_pred             ccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcchHHH
Confidence            677788888888777665 5577788888888888888888888888877654 2256666677777 6677887  888


Q ss_pred             HHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHhchhC
Q 036275          129 EEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAK  173 (271)
Q Consensus       129 ~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~  173 (271)
                      ...+++..+.. +.+...+..+...|...|++++|...|+++...
T Consensus       101 ~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  144 (177)
T 2e2e_A          101 RAMIDKALALD-SNEITALMLLASDAFMQANYAQAIELWQKVMDL  144 (177)
T ss_dssp             HHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHhC-CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence            88888877753 345677777788888888888888888877765

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=98.88  E-value=1.5e-07  Score=67.75  Aligned_cols=131  Identities=11%  Similarity=0.024  Sum_probs=107.2

Q ss_pred             HHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHhchhCCCCCCHHHHHHHHHH
Q 036275          109 TFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAA  188 (271)
Q Consensus       109 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~  188 (271)
                      ...+..+...+...|++++|...+++..+.. +.+..++..+...+...|++++|.+.+++..... +.+...+..+...
T Consensus        13 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~   90 (166)
T 1a17_A           13 AEELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAAS   90 (166)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHH
Confidence            3457778888999999999999999988763 4578889999999999999999999999988763 3367889999999


Q ss_pred             HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH--HHHHHhccCcHHHHHHHHHHHHh
Q 036275          189 YSRKKLYRRCLEIFEEMIDAGCYPDGGTAKV--LISACSSEDQIEQVTTLVRTMHK  242 (271)
Q Consensus       189 ~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~--l~~~~~~~g~~~~a~~~~~~~~~  242 (271)
                      +...|++++|...+++..+.. +.+...+..  ....+...|++++|...+.+...
T Consensus        91 ~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~  145 (166)
T 1a17_A           91 NMALGKFRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS  145 (166)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence            999999999999999988753 334555533  33447788999999999887643

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=98.88  E-value=5.4e-07  Score=71.72  Aligned_cols=199  Identities=8%  Similarity=-0.046  Sum_probs=133.6

Q ss_pred             HHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHH---HHHHHHHHHccCCHhHHHHHHHHHHh
Q 036275           61 VFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFV---INSMLNLYGRLGQFEKMEEVLTAMEK  137 (271)
Q Consensus        61 ~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~---~~~li~~~~~~g~~~~a~~~~~~m~~  137 (271)
                      .+..+..-...|+..+...+...+.-.-         +.+.......+...   +...+..+...|++++|..++++..+
T Consensus        33 ~~s~~e~g~~~~~~~~l~~i~~~l~~~~---------~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~y~~a~~~~~~~l~  103 (293)
T 3u3w_A           33 EVSRIESGAVYPSMDILQGIAAKLQIPI---------IHFYEVLIYSDIERKKQFKDQVIMLCKQKRYKEIYNKVWNELK  103 (293)
T ss_dssp             HHHHHHTTSCCCCHHHHHHHHHHHTCCT---------HHHHHTTTSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred             HHHHHHCCCCCCCHHHHHHHHHHhCcCH---------HHHhCCCCCCcchhHHHHHHHHHHHHHHhhHHHHHHHHHHHhc
Confidence            4445544345677777766666553221         11222222223333   33347788899999999999999887


Q ss_pred             CCC-CCCh----hhHHHHHHHHHcCCCHHHHHHHHHhchhCCCC-CC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 036275          138 GSY-AADI----STYNILINIYGRGGFIEKMEGLFQSLPAKRLK-PD----VVTWTSRLAAYSRKKLYRRCLEIFEEMID  207 (271)
Q Consensus       138 ~~~-~~~~----~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~-~~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~  207 (271)
                      ... .|+.    ..+..+...+...|++++|.+.|++....... ++    ..+++.+...|...|++++|...+++..+
T Consensus       104 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~  183 (293)
T 3u3w_A          104 KEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILK  183 (293)
T ss_dssp             TCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             cccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            521 2221    23445777788889999999999998763222 22    23689999999999999999999999874


Q ss_pred             ----C-CCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHHHhccc---------chhHHHHHHHhhccc-cccchhhh
Q 036275          208 ----A-GCYPD-GGTAKVLISACSSEDQIEQVTTLVRTMHKDMK---------TALPIYFNLYGEKGV-ARSNLGQY  268 (271)
Q Consensus       208 ----~-~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~---------~~~~~~~~~~~~~G~-~~~a~~~~  268 (271)
                          . +..+. ..++..+...|...|++++|...+++..+...         .....+-.+|.+.|+ .++|++.|
T Consensus       184 ~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~  260 (293)
T 3u3w_A          184 QLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAY  260 (293)
T ss_dssp             HHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred             HHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHH
Confidence                1 21222 24778889999999999999999998764321         123335566888995 48888765

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=98.87  E-value=3.1e-07  Score=72.15  Aligned_cols=191  Identities=11%  Similarity=0.027  Sum_probs=145.0

Q ss_pred             hcCHHHHHHHHHHHHHcCCCCCHHHHHHH-------HHHHHhcCChHHHHHHHHHHHH------------CCCC----C-
Q 036275           52 SIYFSDAHAVFEEMKRLGITPTMKSHMLL-------LTAYSKTGNVAKCEGVINQMHK------------SGLK----P-  107 (271)
Q Consensus        52 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l-------i~~~~~~~~~~~a~~~~~~m~~------------~~~~----~-  107 (271)
                      .++...|.+.|.++.+.+ |-....|..+       ...+...++..+++..+.+-.+            .|.-    + 
T Consensus        19 ~~d~~~A~~~F~~a~~~d-P~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~~~   97 (282)
T 4f3v_A           19 PMSEARSLDLFTEITNYD-ESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDITYP   97 (282)
T ss_dssp             TTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCEEE
T ss_pred             CCCHHHHHHHHHHHHHhC-hhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCcccccccc
Confidence            899999999999999986 6678889888       5666666666666666655544            2210    0 


Q ss_pred             --C-HHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHhchhCCCCCC--HHHH
Q 036275          108 --D-TFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPD--VVTW  182 (271)
Q Consensus       108 --~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~--~~~~  182 (271)
                        + ....-.+...+...|++++|.++|+.+...+  |+......+...+.+.+++++|+..|+...... .|.  ...+
T Consensus        98 v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~a~  174 (282)
T 4f3v_A           98 VTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGAAG  174 (282)
T ss_dssp             CSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHHHH
T ss_pred             cCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHHHH
Confidence              0 2334456778889999999999999988754  544366677789999999999999999766542 111  2468


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHhccCcHHHHHHHHHHHHhcccc
Q 036275          183 TSRLAAYSRKKLYRRCLEIFEEMIDAGCYPD--GGTAKVLISACSSEDQIEQVTTLVRTMHKDMKT  246 (271)
Q Consensus       183 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~  246 (271)
                      ..+-.++...|++++|...|++.......|.  .........++.+.|+.++|..+|+++....+.
T Consensus       175 ~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~  240 (282)
T 4f3v_A          175 VAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE  240 (282)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc
Confidence            8888999999999999999999885543254  335566677788999999999999999987776

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=98.86  E-value=9.8e-07  Score=74.83  Aligned_cols=178  Identities=12%  Similarity=0.065  Sum_probs=133.7

Q ss_pred             CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC---ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc----CCHh
Q 036275           54 YFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTG---NVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRL----GQFE  126 (271)
Q Consensus        54 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~---~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~----g~~~  126 (271)
                      ..+.+..++.....    .++..+..+...|...|   +.++|+..|++..+.| .++...+..+...|...    ++.+
T Consensus       160 ~~~~a~~~~~~a~~----~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~~~d~~  234 (452)
T 3e4b_A          160 HLDDVERICKAALN----TTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDATLGTPDEK  234 (452)
T ss_dssp             GHHHHHHHHHHHTT----TCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGGGSSCCHH
T ss_pred             CHHHHHHHHHHHHc----CCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCCCCCHH
Confidence            34444444443322    23347888888898999   8999999999999987 44666666777777655    7899


Q ss_pred             HHHHHHHHHHhCCCCCChhhHHHHHHH-H--HcCCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcC-----CHHHH
Q 036275          127 KMEEVLTAMEKGSYAADISTYNILINI-Y--GRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKK-----LYRRC  198 (271)
Q Consensus       127 ~a~~~~~~m~~~~~~~~~~~~~~li~~-~--~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g-----~~~~a  198 (271)
                      +|.+.|+... .|   +...+..|... +  ...+++++|.+.|++..+.|   +...+..|...|. .|     ++++|
T Consensus       235 ~A~~~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A  306 (452)
T 3e4b_A          235 TAQALLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAA  306 (452)
T ss_dssp             HHHHHHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHH
T ss_pred             HHHHHHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHH
Confidence            9999999987 43   56667777776 4  56899999999999988876   6778888888877 55     99999


Q ss_pred             HHHHHHHHHCCCCCCHHHHHHHHHHHhc----cCcHHHHHHHHHHHHhcccchh
Q 036275          199 LEIFEEMIDAGCYPDGGTAKVLISACSS----EDQIEQVTTLVRTMHKDMKTAL  248 (271)
Q Consensus       199 ~~~~~~m~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~  248 (271)
                      .+.|++.. .|   +...+..+...|..    ..+.++|..+|++..+.+.+..
T Consensus       307 ~~~~~~Aa-~g---~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~~A  356 (452)
T 3e4b_A          307 EAHFEKAV-GR---EVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQNSA  356 (452)
T ss_dssp             HHHHHTTT-TT---CHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTCTTH
T ss_pred             HHHHHHHh-CC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhChHHH
Confidence            99998877 43   56666777766665    4499999999999887765443

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=98.86  E-value=9.4e-07  Score=70.71  Aligned_cols=209  Identities=11%  Similarity=0.009  Sum_probs=111.3

Q ss_pred             HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC--ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH----Hcc---CCH
Q 036275           55 FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTG--NVAKCEGVINQMHKSGLKPDTFVINSMLNLY----GRL---GQF  125 (271)
Q Consensus        55 ~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~--~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~----~~~---g~~  125 (271)
                      .++|++.++.+...+ |-....|+.--..+...+  +++++++.++.+.....+ +..+|+.--..+    ...   +++
T Consensus        49 s~~aL~~t~~~L~~n-P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk-~y~aW~~R~~iL~~~~~~l~~~~~~  126 (306)
T 3dra_A           49 SERALHITELGINEL-ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEK-NYQIWNYRQLIIGQIMELNNNDFDP  126 (306)
T ss_dssp             SHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTT-CCHHHHHHHHHHHHHHHHTTTCCCT
T ss_pred             CHHHHHHHHHHHHHC-cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcc-cHHHHHHHHHHHHHHHHhccccCCH
Confidence            356666666666655 445556666666666666  666666666666655322 333333322222    233   556


Q ss_pred             hHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHH--HHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCC------HHH
Q 036275          126 EKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIE--KMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKL------YRR  197 (271)
Q Consensus       126 ~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~--~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~------~~~  197 (271)
                      ++++++++.+.+.. +-+..+|+.-.-.+.+.|.++  ++++.++++.+... -|...|+.-.......+.      +++
T Consensus       127 ~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~-~N~sAW~~R~~ll~~l~~~~~~~~~~e  204 (306)
T 3dra_A          127 YREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDL-KNNSAWSHRFFLLFSKKHLATDNTIDE  204 (306)
T ss_dssp             HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHSSGGGCCHHHHHH
T ss_pred             HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhccccchhhhHHH
Confidence            66666666666542 445566666666666666665  66666666665432 245555555555555554      566


Q ss_pred             HHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHH-HHHHHHHHHHhcc---cch---hHHHHHHHhhccccccchhhh
Q 036275          198 CLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIE-QVTTLVRTMHKDM---KTA---LPIYFNLYGEKGVARSNLGQY  268 (271)
Q Consensus       198 a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~-~a~~~~~~~~~~~---~~~---~~~~~~~~~~~G~~~~a~~~~  268 (271)
                      +++.++.+.... +-|...|...-..+.+.|... .+..+..++.+.+   +..   ...+.++|.+.|+.++|++.|
T Consensus       205 El~~~~~aI~~~-p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~  281 (306)
T 3dra_A          205 ELNYVKDKIVKC-PQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVY  281 (306)
T ss_dssp             HHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHHhC-CCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Confidence            666666655543 335555555555555544422 2334444443322   111   233445566666666665544

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=98.86  E-value=5.2e-07  Score=71.81  Aligned_cols=167  Identities=13%  Similarity=0.019  Sum_probs=121.8

Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-----HHHHHHHHHHHccCCHhHHHHHHHHHHhCCC---CCC--h
Q 036275           75 KSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDT-----FVINSMLNLYGRLGQFEKMEEVLTAMEKGSY---AAD--I  144 (271)
Q Consensus        75 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~-----~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~---~~~--~  144 (271)
                      ..+...+..+...|++++|.+.+++..+.....+.     ..+..+...+...|++++|...+++..+...   .+.  .
T Consensus        76 ~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~  155 (293)
T 2qfc_A           76 KQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNL  155 (293)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHH
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHH
Confidence            34556677788899999999999888775432111     2244566677888999999999998875321   122  4


Q ss_pred             hhHHHHHHHHHcCCCHHHHHHHHHhchh---C-CCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCC-
Q 036275          145 STYNILINIYGRGGFIEKMEGLFQSLPA---K-RLKP--DVVTWTSRLAAYSRKKLYRRCLEIFEEMIDA----GCYPD-  213 (271)
Q Consensus       145 ~~~~~li~~~~~~g~~~~a~~~~~~m~~---~-g~~~--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~p~-  213 (271)
                      .+++.+...|...|++++|...|++...   . +-.+  ...++..+...|...|++++|...+++..+.    +.... 
T Consensus       156 ~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~  235 (293)
T 2qfc_A          156 YIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALI  235 (293)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHH
Confidence            5788899999999999999999998762   2 1111  1257888899999999999999999887642    21111 


Q ss_pred             HHHHHHHHHHHhccCcHHHH-HHHHHHHH
Q 036275          214 GGTAKVLISACSSEDQIEQV-TTLVRTMH  241 (271)
Q Consensus       214 ~~~~~~l~~~~~~~g~~~~a-~~~~~~~~  241 (271)
                      ..+|..+..++...|+.++| ...+++..
T Consensus       236 ~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al  264 (293)
T 2qfc_A          236 GQLYYQRGECLRKLEYEEAEIEDAYKKAS  264 (293)
T ss_dssp             HHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence            56788888899999999999 77777754

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=98.84  E-value=1.7e-07  Score=63.73  Aligned_cols=95  Identities=15%  Similarity=0.136  Sum_probs=40.5

Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHH
Q 036275           75 KSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIY  154 (271)
Q Consensus        75 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~  154 (271)
                      ..|..+...+...|++++|.+.++++.+.. +.+...+..+...+...|++++|..+++++.+.. +.+..++..+...+
T Consensus        10 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~   87 (125)
T 1na0_A           10 EAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAY   87 (125)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHH
Confidence            344444444444444444444444444332 1233344444444444444444444444444331 22333444444444


Q ss_pred             HcCCCHHHHHHHHHhch
Q 036275          155 GRGGFIEKMEGLFQSLP  171 (271)
Q Consensus       155 ~~~g~~~~a~~~~~~m~  171 (271)
                      ...|++++|...++++.
T Consensus        88 ~~~~~~~~A~~~~~~~~  104 (125)
T 1na0_A           88 YKQGDYDEAIEYYQKAL  104 (125)
T ss_dssp             HHTTCHHHHHHHHHHHH
T ss_pred             HHhcCHHHHHHHHHHHH
Confidence            44444444444444433

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=98.84  E-value=2.5e-07  Score=62.92  Aligned_cols=114  Identities=14%  Similarity=0.175  Sum_probs=80.6

Q ss_pred             HHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHhchhCCCCCCHHHHHHHHHH
Q 036275          109 TFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAA  188 (271)
Q Consensus       109 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~  188 (271)
                      ...+..+...+...|++++|.+.++++.+.. +.+..++..+...+.+.|++++|...++++.... +.+..++..+...
T Consensus         9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~   86 (125)
T 1na0_A            9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNA   86 (125)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHH
Confidence            4567777777888888888888888777653 4456777778888888888888888888776653 2356677777888


Q ss_pred             HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh
Q 036275          189 YSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACS  225 (271)
Q Consensus       189 ~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~  225 (271)
                      +...|++++|...++++.+.. +.+...+..+...+.
T Consensus        87 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~  122 (125)
T 1na0_A           87 YYKQGDYDEAIEYYQKALELD-PNNAEAKQNLGNAKQ  122 (125)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred             HHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHH
Confidence            888888888888888777643 334455555544443

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=98.81  E-value=1.4e-07  Score=65.37  Aligned_cols=94  Identities=11%  Similarity=0.013  Sum_probs=39.8

Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHc
Q 036275           77 HMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGR  156 (271)
Q Consensus        77 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~  156 (271)
                      +......+.+.|++++|++.|++..+.. +.+...|..+..++.+.|++++|++.+++..+.. +.+...|..+..++..
T Consensus        16 ~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~   93 (126)
T 4gco_A           16 EKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYIRKAACLVA   93 (126)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHHHHHHHHHH
Confidence            3344444444444444444444444332 1133344444444444444444444444444331 2233444444444444


Q ss_pred             CCCHHHHHHHHHhchh
Q 036275          157 GGFIEKMEGLFQSLPA  172 (271)
Q Consensus       157 ~g~~~~a~~~~~~m~~  172 (271)
                      .|++++|.+.|++..+
T Consensus        94 ~~~~~~A~~~~~~al~  109 (126)
T 4gco_A           94 MREWSKAQRAYEDALQ  109 (126)
T ss_dssp             TTCHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHH
Confidence            4444444444444433

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=98.81  E-value=5.5e-08  Score=72.62  Aligned_cols=154  Identities=5%  Similarity=-0.008  Sum_probs=81.9

Q ss_pred             hcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHccCCHh
Q 036275           52 SIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKS----GLKP-DTFVINSMLNLYGRLGQFE  126 (271)
Q Consensus        52 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----~~~~-~~~~~~~li~~~~~~g~~~  126 (271)
                      .|++++|.+.++.+.. ........+..+...+...|++++|...+++..+.    +..+ ....+..+...+...|+++
T Consensus         5 ~g~~~~A~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~   83 (203)
T 3gw4_A            5 AHDYALAERQAQALLA-HPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWD   83 (203)
T ss_dssp             --CHHHHHHHHHHHHT-STTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             cccHHHHHHHHHHhcC-ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence            5677777775444432 21234566666777777777777777777666541    1111 2234566666666777777


Q ss_pred             HHHHHHHHHHhC----CCCC--ChhhHHHHHHHHHcCCCHHHHHHHHHhchhCCC-CCC----HHHHHHHHHHHHhcCCH
Q 036275          127 KMEEVLTAMEKG----SYAA--DISTYNILINIYGRGGFIEKMEGLFQSLPAKRL-KPD----VVTWTSRLAAYSRKKLY  195 (271)
Q Consensus       127 ~a~~~~~~m~~~----~~~~--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~-~~~----~~~~~~li~~~~~~g~~  195 (271)
                      +|.+.+++..+.    +-.+  ....+..+...+...|++++|.+.+++...... ..+    ..++..+...+...|++
T Consensus        84 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~  163 (203)
T 3gw4_A           84 AARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNL  163 (203)
T ss_dssp             HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCH
Confidence            776666655432    1011  123455566666666666666666665442100 001    12344555555566666


Q ss_pred             HHHHHHHHHHH
Q 036275          196 RRCLEIFEEMI  206 (271)
Q Consensus       196 ~~a~~~~~~m~  206 (271)
                      ++|...+++..
T Consensus       164 ~~A~~~~~~al  174 (203)
T 3gw4_A          164 LEAQQHWLRAR  174 (203)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            66665555543

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=98.81  E-value=1.7e-07  Score=64.65  Aligned_cols=98  Identities=10%  Similarity=-0.042  Sum_probs=54.9

Q ss_pred             CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChhhHHHHHH
Q 036275           73 TMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILIN  152 (271)
Q Consensus        73 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~  152 (271)
                      +...|..+...+...|++++|...|++..+.. +.+...+..+...+...|++++|.+.+++..+.. +.+...+..+..
T Consensus        15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~   92 (133)
T 2lni_A           15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRKAA   92 (133)
T ss_dssp             HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHHHH
Confidence            44555555666666666666666666655543 1244555555555666666666666666555542 234455555555


Q ss_pred             HHHcCCCHHHHHHHHHhchh
Q 036275          153 IYGRGGFIEKMEGLFQSLPA  172 (271)
Q Consensus       153 ~~~~~g~~~~a~~~~~~m~~  172 (271)
                      ++.+.|++++|.+.|++...
T Consensus        93 ~~~~~~~~~~A~~~~~~~~~  112 (133)
T 2lni_A           93 ALEAMKDYTKAMDVYQKALD  112 (133)
T ss_dssp             HHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHhhHHHHHHHHHHHHH
Confidence            55666666666666555544

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=98.80  E-value=2.9e-07  Score=63.65  Aligned_cols=97  Identities=7%  Similarity=0.014  Sum_probs=74.3

Q ss_pred             HHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHH
Q 036275          110 FVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAY  189 (271)
Q Consensus       110 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~  189 (271)
                      ..+......|.+.|++++|++.|++..+.. +.+...|..+..+|.+.|++++|++.|++..+.. +.+...|..+..++
T Consensus        14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~   91 (126)
T 4gco_A           14 QEEKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYIRKAACL   91 (126)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHHHHHHHH
Confidence            456677778888888888888888877753 4567788888888888888888888888877653 23466788888888


Q ss_pred             HhcCCHHHHHHHHHHHHHC
Q 036275          190 SRKKLYRRCLEIFEEMIDA  208 (271)
Q Consensus       190 ~~~g~~~~a~~~~~~m~~~  208 (271)
                      ...|++++|.+.|++.++.
T Consensus        92 ~~~~~~~~A~~~~~~al~l  110 (126)
T 4gco_A           92 VAMREWSKAQRAYEDALQV  110 (126)
T ss_dssp             HHTTCHHHHHHHHHHHHHH
T ss_pred             HHCCCHHHHHHHHHHHHHH
Confidence            8888888888888887765

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=98.80  E-value=6.3e-08  Score=72.31  Aligned_cols=157  Identities=8%  Similarity=-0.032  Sum_probs=115.4

Q ss_pred             HhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHh----CCCCC-ChhhHHHHHHHHHcCCC
Q 036275           85 SKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEK----GSYAA-DISTYNILINIYGRGGF  159 (271)
Q Consensus        85 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~----~~~~~-~~~~~~~li~~~~~~g~  159 (271)
                      ...|++++|.++++.+... .......+..+...+...|++++|...+++..+    .+..+ ...++..+...+...|+
T Consensus         3 ~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~   81 (203)
T 3gw4_A            3 FEAHDYALAERQAQALLAH-PATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGN   81 (203)
T ss_dssp             ----CHHHHHHHHHHHHTS-TTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred             cccccHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCC
Confidence            4678999999966555442 223567788999999999999999999998775    22222 35678889999999999


Q ss_pred             HHHHHHHHHhchhC----CCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH----CCCCC-CHHHHHHHHHHHhccC
Q 036275          160 IEKMEGLFQSLPAK----RLKP--DVVTWTSRLAAYSRKKLYRRCLEIFEEMID----AGCYP-DGGTAKVLISACSSED  228 (271)
Q Consensus       160 ~~~a~~~~~~m~~~----g~~~--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~----~~~~p-~~~~~~~l~~~~~~~g  228 (271)
                      +++|.+.+++....    +-.|  ....+..+...+...|++++|...+++..+    .+..+ -..++..+...+...|
T Consensus        82 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g  161 (203)
T 3gw4_A           82 WDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEK  161 (203)
T ss_dssp             HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCc
Confidence            99999999986542    2111  234678888899999999999999988764    22111 1234577788899999


Q ss_pred             cHHHHHHHHHHHHh
Q 036275          229 QIEQVTTLVRTMHK  242 (271)
Q Consensus       229 ~~~~a~~~~~~~~~  242 (271)
                      ++++|.+.+++..+
T Consensus       162 ~~~~A~~~~~~al~  175 (203)
T 3gw4_A          162 NLLEAQQHWLRARD  175 (203)
T ss_dssp             CHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHH
Confidence            99999999998764

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=98.80  E-value=1.1e-07  Score=68.05  Aligned_cols=95  Identities=19%  Similarity=0.065  Sum_probs=48.3

Q ss_pred             HHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHH
Q 036275          111 VINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYS  190 (271)
Q Consensus       111 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~  190 (271)
                      .+..+...+.+.|++++|+..|+...+.. |.+...|..+..+|...|++++|.+.|++..... +-++..|..+..+|.
T Consensus        38 ~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~-P~~~~~~~~lg~~~~  115 (151)
T 3gyz_A           38 DIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG-KNDYTPVFHTGQCQL  115 (151)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SSCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHH
Confidence            34444455555555555555555555442 3344555555555555555555555555554432 112344555555555


Q ss_pred             hcCCHHHHHHHHHHHHH
Q 036275          191 RKKLYRRCLEIFEEMID  207 (271)
Q Consensus       191 ~~g~~~~a~~~~~~m~~  207 (271)
                      ..|++++|...|++..+
T Consensus       116 ~lg~~~eA~~~~~~al~  132 (151)
T 3gyz_A          116 RLKAPLKAKECFELVIQ  132 (151)
T ss_dssp             HTTCHHHHHHHHHHHHH
T ss_pred             HcCCHHHHHHHHHHHHH
Confidence            55555555555555554

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=98.80  E-value=9.9e-07  Score=70.18  Aligned_cols=162  Identities=8%  Similarity=-0.019  Sum_probs=120.6

Q ss_pred             chHHHHHH--hcCHHHHHHHHHHHHHcCCCCCH------HHHHHHHHHHHhcCChHHHHHHHHHHHHCCC---CCC--HH
Q 036275           44 PNLFVFIF--SIYFSDAHAVFEEMKRLGITPTM------KSHMLLLTAYSKTGNVAKCEGVINQMHKSGL---KPD--TF  110 (271)
Q Consensus        44 y~~ll~~~--~g~~~~A~~~~~~~~~~~~~~~~------~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~---~~~--~~  110 (271)
                      +...+..+  .|++++|.+.+.+..+.... ..      ..+..+...+...|++++|+..+++..+...   .+.  ..
T Consensus        78 l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~  156 (293)
T 2qfc_A           78 FKDQVIMLCKQKRYKEIYNKVWNELKKEEY-HPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY  156 (293)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHTCCC-CHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHhccccC-ChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence            33344444  99999999999988775422 22      2244566667788999999999999876421   222  45


Q ss_pred             HHHHHHHHHHccCCHhHHHHHHHHHHh---C-CCCC--ChhhHHHHHHHHHcCCCHHHHHHHHHhchhC----CCCCC-H
Q 036275          111 VINSMLNLYGRLGQFEKMEEVLTAMEK---G-SYAA--DISTYNILINIYGRGGFIEKMEGLFQSLPAK----RLKPD-V  179 (271)
Q Consensus       111 ~~~~li~~~~~~g~~~~a~~~~~~m~~---~-~~~~--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~~~-~  179 (271)
                      +++.+...|...|++++|...+++..+   . +-.+  ...++..+...|.+.|++++|.+.+++....    +.... .
T Consensus       157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~  236 (293)
T 2qfc_A          157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG  236 (293)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence            789999999999999999999998872   2 1111  1268899999999999999999999987642    11111 5


Q ss_pred             HHHHHHHHHHHhcCCHHHH-HHHHHHHH
Q 036275          180 VTWTSRLAAYSRKKLYRRC-LEIFEEMI  206 (271)
Q Consensus       180 ~~~~~li~~~~~~g~~~~a-~~~~~~m~  206 (271)
                      .+|..+...|...|++++| ...+++..
T Consensus       237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al  264 (293)
T 2qfc_A          237 QLYYQRGECLRKLEYEEAEIEDAYKKAS  264 (293)
T ss_dssp             HHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence            6889999999999999999 77677654

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=98.79  E-value=1.4e-07  Score=64.72  Aligned_cols=117  Identities=7%  Similarity=-0.072  Sum_probs=57.7

Q ss_pred             HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChhhHHHHHHH
Q 036275           74 MKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINI  153 (271)
Q Consensus        74 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~  153 (271)
                      ...+..+...+...|++++|...+++..... +.+...+..+...+...|++++|.+.++...+.. +.+...+..+...
T Consensus        12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~   89 (131)
T 2vyi_A           12 AERLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGLA   89 (131)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHHH
Confidence            3444455555555555555555555554432 1234445555555555555555555555555432 2334455555555


Q ss_pred             HHcCCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcC
Q 036275          154 YGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKK  193 (271)
Q Consensus       154 ~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g  193 (271)
                      +...|++++|.+.|++..... +.+...+..+...+...|
T Consensus        90 ~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~  128 (131)
T 2vyi_A           90 LSSLNKHVEAVAYYKKALELD-PDNETYKSNLKIAELKLR  128 (131)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHT
T ss_pred             HHHhCCHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHh
Confidence            555555555555555544431 113344444444444443

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=98.77  E-value=2.4e-07  Score=63.87  Aligned_cols=116  Identities=12%  Similarity=0.070  Sum_probs=76.3

Q ss_pred             CHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHhchhCCCCCCHHHHHHHHH
Q 036275          108 DTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLA  187 (271)
Q Consensus       108 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~  187 (271)
                      +...+..+...+...|++++|.+.+++..+.. +.+...+..+...+...|++++|.+.+++..... +.+...+..+..
T Consensus        15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~   92 (133)
T 2lni_A           15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRKAA   92 (133)
T ss_dssp             HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHHHH
Confidence            44567777777777788888887777777652 3456677777777777777777777777766542 224566777777


Q ss_pred             HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc
Q 036275          188 AYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSS  226 (271)
Q Consensus       188 ~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~  226 (271)
                      .+...|++++|.+.+++..+.. +-+...+..+..++..
T Consensus        93 ~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~  130 (133)
T 2lni_A           93 ALEAMKDYTKAMDVYQKALDLD-SSCKEAADGYQRCMMA  130 (133)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHC-GGGTHHHHHHHHHHHH
T ss_pred             HHHHHhhHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHH
Confidence            7777777777777777766542 2223444444444433

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=98.76  E-value=3.7e-07  Score=62.57  Aligned_cols=114  Identities=11%  Similarity=-0.119  Sum_probs=95.9

Q ss_pred             chHHHHHH--hcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 036275           44 PNLFVFIF--SIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGR  121 (271)
Q Consensus        44 y~~ll~~~--~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~  121 (271)
                      |..+...+  .|++++|.+.|++..+.. +.+...+..+...+...|++++|...+++..+.. +.+...+..+...+..
T Consensus        15 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~   92 (131)
T 2vyi_A           15 LKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGLALSS   92 (131)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHHHHHH
Confidence            44555555  999999999999998875 5578899999999999999999999999998864 3357788899999999


Q ss_pred             cCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCH
Q 036275          122 LGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFI  160 (271)
Q Consensus       122 ~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~  160 (271)
                      .|++++|...+++..+.. +.+...+..+..++.+.|++
T Consensus        93 ~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~  130 (131)
T 2vyi_A           93 LNKHVEAVAYYKKALELD-PDNETYKSNLKIAELKLREA  130 (131)
T ss_dssp             TTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTTC
T ss_pred             hCCHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHhcC
Confidence            999999999999998863 44677888888888877764

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=98.75  E-value=4e-07  Score=74.11  Aligned_cols=131  Identities=10%  Similarity=-0.115  Sum_probs=78.4

Q ss_pred             CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC--------------HHHHHHHHHHHHccCCHhHHHHHHHHHHhC
Q 036275           73 TMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPD--------------TFVINSMLNLYGRLGQFEKMEEVLTAMEKG  138 (271)
Q Consensus        73 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~--------------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~  138 (271)
                      +...|..+...+.+.|++++|+..|++..+......              ...|..+..++.+.|++++|+..+++..+.
T Consensus       146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~  225 (336)
T 1p5q_A          146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALEL  225 (336)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            345666667777777777777777777666532211              355666666666666666666666666654


Q ss_pred             CCCCChhhHHHHHHHHHcCCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCCHHHH-HHHHHHH
Q 036275          139 SYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRC-LEIFEEM  205 (271)
Q Consensus       139 ~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a-~~~~~~m  205 (271)
                      . +.+...+..+..+|...|++++|...|++..+.. +-+...+..+...+...|+.++| ...++.|
T Consensus       226 ~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~  291 (336)
T 1p5q_A          226 D-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY-PNNKAAKTQLAVCQQRIRRQLAREKKLYANM  291 (336)
T ss_dssp             C-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             C-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            2 3345666666666666666666666666665542 12345566666666666666655 3344444

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=98.74  E-value=4.8e-08  Score=69.69  Aligned_cols=95  Identities=8%  Similarity=-0.046  Sum_probs=44.1

Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHH
Q 036275           75 KSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIY  154 (271)
Q Consensus        75 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~  154 (271)
                      ..+..+...+...|++++|+..|++..... +.+...|..+..++...|++++|+..|++..... +.+...+..+..+|
T Consensus        22 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~   99 (148)
T 2vgx_A           22 EQLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD-IXEPRFPFHAAECL   99 (148)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHH
Confidence            334444444445555555555555444432 1234444444444555555555555555444432 22344444444455


Q ss_pred             HcCCCHHHHHHHHHhch
Q 036275          155 GRGGFIEKMEGLFQSLP  171 (271)
Q Consensus       155 ~~~g~~~~a~~~~~~m~  171 (271)
                      ...|++++|.+.|++..
T Consensus       100 ~~~g~~~~A~~~~~~al  116 (148)
T 2vgx_A          100 LQXGELAEAESGLFLAQ  116 (148)
T ss_dssp             HHTTCHHHHHHHHHHHH
T ss_pred             HHcCCHHHHHHHHHHHH
Confidence            55555555555554443

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=98.73  E-value=3.9e-07  Score=65.19  Aligned_cols=103  Identities=12%  Similarity=0.012  Sum_probs=77.7

Q ss_pred             CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChhhHHHHHH
Q 036275           73 TMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILIN  152 (271)
Q Consensus        73 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~  152 (271)
                      +...+..+...+.+.|++++|+..|++..+.. +-+...|..+..++...|++++|+..|++..+.. |.++..|..+..
T Consensus        35 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~-P~~~~~~~~lg~  112 (151)
T 3gyz_A           35 MMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG-KNDYTPVFHTGQ  112 (151)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SSCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-CCCcHHHHHHHH
Confidence            45567777777888888888888888887764 2366777788888888888888888888887763 445677778888


Q ss_pred             HHHcCCCHHHHHHHHHhchhCCCCCCH
Q 036275          153 IYGRGGFIEKMEGLFQSLPAKRLKPDV  179 (271)
Q Consensus       153 ~~~~~g~~~~a~~~~~~m~~~g~~~~~  179 (271)
                      +|...|++++|.+.|++..+.  .|+.
T Consensus       113 ~~~~lg~~~eA~~~~~~al~l--~~~~  137 (151)
T 3gyz_A          113 CQLRLKAPLKAKECFELVIQH--SNDE  137 (151)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHH--CCCH
T ss_pred             HHHHcCCHHHHHHHHHHHHHh--CCCH
Confidence            888888888888888887765  3554

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=98.73  E-value=5.8e-08  Score=77.06  Aligned_cols=186  Identities=8%  Similarity=-0.046  Sum_probs=119.5

Q ss_pred             HHHHHH--hcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC
Q 036275           46 LFVFIF--SIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLG  123 (271)
Q Consensus        46 ~ll~~~--~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g  123 (271)
                      .+...+  .|++++|++.|++..+.. +.+...|..+..++.+.|++++|+..+++..+.. +-+...+..+..++...|
T Consensus         9 ~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g   86 (281)
T 2c2l_A            9 EQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQCQLEME   86 (281)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcC
Confidence            344444  999999999999998875 5588889999999999999999999999988874 336678888999999999


Q ss_pred             CHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 036275          124 QFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFE  203 (271)
Q Consensus       124 ~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~  203 (271)
                      ++++|...|++..+.. +.+...+...+....+.........    ........+......+ ..+ ..|+.++|.+.++
T Consensus        87 ~~~~A~~~~~~al~l~-p~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~i~~~l-~~l-~~~~~~~A~~~~~  159 (281)
T 2c2l_A           87 SYDEAIANLQRAYSLA-KEQRLNFGDDIPSALRIAKKKRWNS----IEERRIHQESELHSYL-TRL-IAAERERELEECQ  159 (281)
T ss_dssp             CHHHHHHHHHHHHHHH-HHTTCCCCSHHHHHHHHHHHHHHHH----HHHTCCCCCCHHHHHH-HHH-HHHHHHHHHTTTS
T ss_pred             CHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHHHHHHHHHH----HHHHHHhhhHHHHHHH-HHH-HHHHHHHHHHHHH
Confidence            9999999998877642 1111111111221111111111111    1112223333333333 332 3688899998888


Q ss_pred             HHHHCCCCCCHHHHH-HHHHHHhcc-CcHHHHHHHHHHHHh
Q 036275          204 EMIDAGCYPDGGTAK-VLISACSSE-DQIEQVTTLVRTMHK  242 (271)
Q Consensus       204 ~m~~~~~~p~~~~~~-~l~~~~~~~-g~~~~a~~~~~~~~~  242 (271)
                      ...+.  .|+..... .+-..+... +.++++.++|.+..+
T Consensus       160 ~al~~--~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~  198 (281)
T 2c2l_A          160 RNHEG--HEDDGHIRAQQACIEAKHDKYMADMDELFSQVDE  198 (281)
T ss_dssp             GGGTT--TSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred             hhhcc--ccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence            87765  45554333 333334443 668889999988765

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=98.73  E-value=1.2e-07  Score=69.38  Aligned_cols=121  Identities=7%  Similarity=0.083  Sum_probs=93.4

Q ss_pred             HhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChhhHHHHHHH-HHcCCCH--H
Q 036275           85 SKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINI-YGRGGFI--E  161 (271)
Q Consensus        85 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~-~~~~g~~--~  161 (271)
                      ...|++++|+..+++..+.. +.+...+..+...+...|++++|...|++..+.. +.+...+..+..+ +...|++  +
T Consensus        21 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~~   98 (177)
T 2e2e_A           21 ASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMTA   98 (177)
T ss_dssp             C-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCCH
T ss_pred             hhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcchH
Confidence            45678888888888877764 3467788888899999999999999999887763 4467778888888 7788888  9


Q ss_pred             HHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 036275          162 KMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDA  208 (271)
Q Consensus       162 ~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~  208 (271)
                      +|...+++..... +-+...+..+...+...|++++|...+++..+.
T Consensus        99 ~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  144 (177)
T 2e2e_A           99 QTRAMIDKALALD-SNEITALMLLASDAFMQANYAQAIELWQKVMDL  144 (177)
T ss_dssp             HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence            9999999887753 234677888888899999999999999988875

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=98.70  E-value=1.4e-05  Score=63.90  Aligned_cols=201  Identities=10%  Similarity=-0.022  Sum_probs=156.8

Q ss_pred             chHHHHHH--hc--CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH----Hhc---CChHHHHHHHHHHHHCCCCCCHHHH
Q 036275           44 PNLFVFIF--SI--YFSDAHAVFEEMKRLGITPTMKSHMLLLTAY----SKT---GNVAKCEGVINQMHKSGLKPDTFVI  112 (271)
Q Consensus        44 y~~ll~~~--~g--~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~----~~~---~~~~~a~~~~~~m~~~~~~~~~~~~  112 (271)
                      ||.--..+  .|  +++++++.++.+...+ |-+..+|+.--..+    ...   +++++++.+++++.+... -+...|
T Consensus        70 Wn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~p-kny~aW  147 (306)
T 3dra_A           70 WIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSSDP-KNHHVW  147 (306)
T ss_dssp             HHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHCT-TCHHHH
T ss_pred             HHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHhCC-CCHHHH
Confidence            44444444  55  9999999999999887 55777887765555    555   789999999999998763 378888


Q ss_pred             HHHHHHHHccCCHh--HHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCC------HHHHHHHHHhchhCCCCCCHHHHHH
Q 036275          113 NSMLNLYGRLGQFE--KMEEVLTAMEKGSYAADISTYNILINIYGRGGF------IEKMEGLFQSLPAKRLKPDVVTWTS  184 (271)
Q Consensus       113 ~~li~~~~~~g~~~--~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~------~~~a~~~~~~m~~~g~~~~~~~~~~  184 (271)
                      +.-.-...+.|.++  +++++++.+.+.. +-+...|+.....+.+.|.      ++++++.++++.... +-|...|+.
T Consensus       148 ~~R~~vl~~l~~~~~~~EL~~~~~~i~~d-~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~-p~n~SaW~y  225 (306)
T 3dra_A          148 SYRKWLVDTFDLHNDAKELSFVDKVIDTD-LKNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKC-PQNPSTWNY  225 (306)
T ss_dssp             HHHHHHHHHTTCTTCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHC-SSCHHHHHH
T ss_pred             HHHHHHHHHhcccChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhC-CCCccHHHH
Confidence            88888888888888  9999999999874 5678888888888888887      899999999888764 337889999


Q ss_pred             HHHHHHhcCCHHH-HHHHHHHHHHCC--CCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhcccchh
Q 036275          185 RLAAYSRKKLYRR-CLEIFEEMIDAG--CYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKDMKTAL  248 (271)
Q Consensus       185 li~~~~~~g~~~~-a~~~~~~m~~~~--~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~  248 (271)
                      +-..+.+.|+..+ +..+..+..+.+  -..+...+..+..++.+.|+.++|.++++.+.+.-.+..
T Consensus       226 ~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~~~Dpir  292 (306)
T 3dra_A          226 LLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLKSKYNPIR  292 (306)
T ss_dssp             HHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGG
T ss_pred             HHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhccChHH
Confidence            8888888887544 555666655432  145778899999999999999999999999987533333

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=98.69  E-value=6e-07  Score=61.70  Aligned_cols=96  Identities=8%  Similarity=-0.060  Sum_probs=48.5

Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHH
Q 036275           75 KSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIY  154 (271)
Q Consensus        75 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~  154 (271)
                      ..|..+...+.+.|++++|+..|++..+.. +.+...|..+..++.+.|++++|+..+++..+.. +.+...+..+..++
T Consensus         5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~   82 (126)
T 3upv_A            5 EEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQ   82 (126)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHH
Confidence            344444555555555555555555555442 1234445555555555555555555555555432 23344555555555


Q ss_pred             HcCCCHHHHHHHHHhchh
Q 036275          155 GRGGFIEKMEGLFQSLPA  172 (271)
Q Consensus       155 ~~~g~~~~a~~~~~~m~~  172 (271)
                      ...|++++|.+.|++..+
T Consensus        83 ~~~~~~~~A~~~~~~al~  100 (126)
T 3upv_A           83 IAVKEYASALETLDAART  100 (126)
T ss_dssp             HHTTCHHHHHHHHHHHHH
T ss_pred             HHHhCHHHHHHHHHHHHH
Confidence            555555555555555443

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=98.68  E-value=6.8e-07  Score=72.76  Aligned_cols=150  Identities=7%  Similarity=-0.044  Sum_probs=119.4

Q ss_pred             CChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCC---------------hhhHHHHH
Q 036275           88 GNVAKCEGVINQMHKSGLKP-DTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAAD---------------ISTYNILI  151 (271)
Q Consensus        88 ~~~~~a~~~~~~m~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~---------------~~~~~~li  151 (271)
                      +++++|...|+...+.  .| +...+..+...+.+.|++++|+..|++..+.. +.+               ...|..+.
T Consensus       127 ~~~~~A~~~~~~a~~~--~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~-p~~~~~~~~~~~~~~~~~~~~~~nla  203 (336)
T 1p5q_A          127 KSFEKAKESWEMNSEE--KLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWL-EYESSFSNEEAQKAQALRLASHLNLA  203 (336)
T ss_dssp             EEEECCCCGGGCCHHH--HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCCCCCSHHHHHHHHHHHHHHHHHH
T ss_pred             eecccccchhcCCHHH--HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHh-hccccCChHHHHHHHHHHHHHHHHHH
Confidence            3445555555443332  22 45678889999999999999999999998863 223               48899999


Q ss_pred             HHHHcCCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHH
Q 036275          152 NIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIE  231 (271)
Q Consensus       152 ~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~  231 (271)
                      .+|.+.|++++|.+.+++..+.. +.+...|..+..+|...|++++|...|++..+.. +-+...+..+..++...|+.+
T Consensus       204 ~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~  281 (336)
T 1p5q_A          204 MCHLKLQAFSAAIESCNKALELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY-PNNKAAKTQLAVCQQRIRRQL  281 (336)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999998763 3367899999999999999999999999998864 446778888899999999999


Q ss_pred             HH-HHHHHHHHh
Q 036275          232 QV-TTLVRTMHK  242 (271)
Q Consensus       232 ~a-~~~~~~~~~  242 (271)
                      ++ ..++++|..
T Consensus       282 ~a~~~~~~~~~~  293 (336)
T 1p5q_A          282 AREKKLYANMFE  293 (336)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            88 456666643

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=98.66  E-value=1.1e-06  Score=77.83  Aligned_cols=193  Identities=12%  Similarity=-0.002  Sum_probs=146.0

Q ss_pred             hcCHHHHH-HHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCC---------CCC------------H
Q 036275           52 SIYFSDAH-AVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGL---------KPD------------T  109 (271)
Q Consensus        52 ~g~~~~A~-~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~---------~~~------------~  109 (271)
                      .|+.++|. ++|++.... .|.+...|-..+....+.|+++.|.++|+++.+...         .|+            .
T Consensus       356 ~~~~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~  434 (679)
T 4e6h_A          356 KNTDSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLT  434 (679)
T ss_dssp             HSCCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred             cCcHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchH
Confidence            77888896 999998865 466777788888888899999999999998876410         132            2


Q ss_pred             HHHHHHHHHHHccCCHhHHHHHHHHHHhC-CCCCChhhHHHHHHHHHcC-CCHHHHHHHHHhchhCCCCCCHHHHHHHHH
Q 036275          110 FVINSMLNLYGRLGQFEKMEEVLTAMEKG-SYAADISTYNILINIYGRG-GFIEKMEGLFQSLPAKRLKPDVVTWTSRLA  187 (271)
Q Consensus       110 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~-~~~~~~~~~~~li~~~~~~-g~~~~a~~~~~~m~~~g~~~~~~~~~~li~  187 (271)
                      ..|...++...+.|+.+.|..+|+...+. + ..+...|...+..-.+. ++.+.|.++|+...+. .+-+...|...+.
T Consensus       435 ~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~-~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~  512 (679)
T 4e6h_A          435 YVYCVYMNTMKRIQGLAASRKIFGKCRRLKK-LVTPDIYLENAYIEYHISKDTKTACKVLELGLKY-FATDGEYINKYLD  512 (679)
T ss_dssp             HHHHHHHHHHHHHHCHHHHHHHHHHHHHTGG-GSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH-HTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCchHHHHHHHH
Confidence            36788888888889999999999999876 2 12334444333333344 4589999999998775 3335667778888


Q ss_pred             HHHhcCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHhccCcHHHHHHHHHHHHhcccch
Q 036275          188 AYSRKKLYRRCLEIFEEMIDAGCYP--DGGTAKVLISACSSEDQIEQVTTLVRTMHKDMKTA  247 (271)
Q Consensus       188 ~~~~~g~~~~a~~~~~~m~~~~~~p--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~  247 (271)
                      -....|+.+.|..+|+..+.....+  ....|...++.-.+.|+.+.+..+.+++.+..+..
T Consensus       513 fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~~  574 (679)
T 4e6h_A          513 FLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPEV  574 (679)
T ss_dssp             HHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTTC
T ss_pred             HHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence            7788899999999999988764222  34578888888888999999999999998876653

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=98.65  E-value=1.8e-07  Score=74.14  Aligned_cols=165  Identities=6%  Similarity=-0.053  Sum_probs=115.6

Q ss_pred             CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChhhHHHHH
Q 036275           72 PTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILI  151 (271)
Q Consensus        72 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li  151 (271)
                      .+...+..+...+.+.|++++|+..|++..+.. +-+...|..+..++.+.|++++|...+++..+.. +.+...+..+.
T Consensus         2 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg   79 (281)
T 2c2l_A            2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLG   79 (281)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence            466788889999999999999999999998874 2377889999999999999999999999998863 45678899999


Q ss_pred             HHHHcCCCHHHHHHHHHhchhCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcH
Q 036275          152 NIYGRGGFIEKMEGLFQSLPAKRLKPDV-VTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQI  230 (271)
Q Consensus       152 ~~~~~~g~~~~a~~~~~~m~~~g~~~~~-~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~  230 (271)
                      .+|...|++++|.+.|++..+..  |+. ..+...+....+..   ++ .-+..........+......+ ..+. .|+.
T Consensus        80 ~~~~~~g~~~~A~~~~~~al~l~--p~~~~~~~~~~~~~~~~~---~~-~~~~~~~~~~~~~~~~i~~~l-~~l~-~~~~  151 (281)
T 2c2l_A           80 QCQLEMESYDEAIANLQRAYSLA--KEQRLNFGDDIPSALRIA---KK-KRWNSIEERRIHQESELHSYL-TRLI-AAER  151 (281)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHH--HHTTCCCCSHHHHHHHHH---HH-HHHHHHHHTCCCCCCHHHHHH-HHHH-HHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhC--ccchhhHHHHHHHHHHHH---HH-HHHHHHHHHHHhhhHHHHHHH-HHHH-HHHH
Confidence            99999999999999999877542  111 01111222211111   11 112223333334444444444 3332 6889


Q ss_pred             HHHHHHHHHHHhcccc
Q 036275          231 EQVTTLVRTMHKDMKT  246 (271)
Q Consensus       231 ~~a~~~~~~~~~~~~~  246 (271)
                      ++|.+.+++..+..+.
T Consensus       152 ~~A~~~~~~al~~~p~  167 (281)
T 2c2l_A          152 ERELEECQRNHEGHED  167 (281)
T ss_dssp             HHHHTTTSGGGTTTSC
T ss_pred             HHHHHHHHhhhccccc
Confidence            9999888887765543

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=98.65  E-value=2.9e-06  Score=75.19  Aligned_cols=209  Identities=9%  Similarity=0.008  Sum_probs=153.9

Q ss_pred             HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHH-HHHHHHHHCCCCCCHHHHHHHHHHHHccCCHhHHHHHHH
Q 036275           55 FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCE-GVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLT  133 (271)
Q Consensus        55 ~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~-~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~  133 (271)
                      .+++..+|++..... +-....|-..+..+...|+.++|. .+|++.... .+.+...|-..+...-+.|+++.|.++|+
T Consensus       325 ~~Rv~~~Ye~aL~~~-p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iye  402 (679)
T 4e6h_A          325 KARMTYVYMQAAQHV-CFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTIL  402 (679)
T ss_dssp             HHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence            345667888887763 668889999999889999999997 999999875 34566778888888999999999999999


Q ss_pred             HHHhCC---------CCCC------------hhhHHHHHHHHHcCCCHHHHHHHHHhchhC-CCCCCHHHHHHHHHHHHh
Q 036275          134 AMEKGS---------YAAD------------ISTYNILINIYGRGGFIEKMEGLFQSLPAK-RLKPDVVTWTSRLAAYSR  191 (271)
Q Consensus       134 ~m~~~~---------~~~~------------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-g~~~~~~~~~~li~~~~~  191 (271)
                      .+.+..         -.|+            ..+|...+....+.|..+.|.++|.+..+. +. .....|...+..-.+
T Consensus       403 k~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~-~~~~lyi~~A~lE~~  481 (679)
T 4e6h_A          403 SCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKL-VTPDIYLENAYIEYH  481 (679)
T ss_dssp             HHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGG-SCTHHHHHHHHHHHT
T ss_pred             HHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC-CChHHHHHHHHHHHH
Confidence            987641         0131            346888888888999999999999999875 21 223344333332223


Q ss_pred             c-CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhcccc------hhHHHHHHHhhccccccc
Q 036275          192 K-KLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKDMKT------ALPIYFNLYGEKGVARSN  264 (271)
Q Consensus       192 ~-g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~------~~~~~~~~~~~~G~~~~a  264 (271)
                      . ++.+.|.++|+..++. ++-+...+...++.....|+.+.|..+|++.....+.      .+..+++.=.+.|..+.+
T Consensus       482 ~~~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~  560 (679)
T 4e6h_A          482 ISKDTKTACKVLELGLKY-FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSV  560 (679)
T ss_dssp             TTSCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHH
T ss_pred             hCCCHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHH
Confidence            3 5589999999998875 3445666677788788889999999999999876652      344445555567776655


Q ss_pred             hhh
Q 036275          265 LGQ  267 (271)
Q Consensus       265 ~~~  267 (271)
                      ...
T Consensus       561 ~~v  563 (679)
T 4e6h_A          561 RTL  563 (679)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            443

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=98.63  E-value=7.4e-07  Score=59.32  Aligned_cols=98  Identities=7%  Similarity=-0.080  Sum_probs=51.9

Q ss_pred             HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCC--ChhhHHHHH
Q 036275           74 MKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAA--DISTYNILI  151 (271)
Q Consensus        74 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~--~~~~~~~li  151 (271)
                      ...+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|.+.+++..+.. +.  +...+..+.
T Consensus         6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l~   83 (112)
T 2kck_A            6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAKA   83 (112)
T ss_dssp             TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHHH
Confidence            3444455555555555666655555555443 2234445555555555555555555555555542 22  345555555


Q ss_pred             HHHHcC-CCHHHHHHHHHhchhC
Q 036275          152 NIYGRG-GFIEKMEGLFQSLPAK  173 (271)
Q Consensus       152 ~~~~~~-g~~~~a~~~~~~m~~~  173 (271)
                      .++... |++++|.+.+++....
T Consensus        84 ~~~~~~~~~~~~A~~~~~~~~~~  106 (112)
T 2kck_A           84 DALRYIEGKEVEAEIAEARAKLE  106 (112)
T ss_dssp             HHHTTCSSCSHHHHHHHHHHGGG
T ss_pred             HHHHHHhCCHHHHHHHHHHHhhc
Confidence            555555 5555555555555443

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=98.62  E-value=2.5e-06  Score=57.20  Aligned_cols=94  Identities=10%  Similarity=-0.037  Sum_probs=40.4

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHH
Q 036275           76 SHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYG  155 (271)
Q Consensus        76 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~  155 (271)
                      .+..+...+...|++++|...+++..... +.+...+..+...+...|++++|...+++..+.. +.+...+..+..++.
T Consensus         6 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~   83 (118)
T 1elw_A            6 ELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAALE   83 (118)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHHHHH
Confidence            34444444444444444444444444332 1133344444444444444444444444444331 223334444444444


Q ss_pred             cCCCHHHHHHHHHhch
Q 036275          156 RGGFIEKMEGLFQSLP  171 (271)
Q Consensus       156 ~~g~~~~a~~~~~~m~  171 (271)
                      ..|++++|.+.+++..
T Consensus        84 ~~~~~~~A~~~~~~~~   99 (118)
T 1elw_A           84 FLNRFEEAKRTYEEGL   99 (118)
T ss_dssp             HTTCHHHHHHHHHHHH
T ss_pred             HHhhHHHHHHHHHHHH
Confidence            4444444444444443

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=98.62  E-value=1.8e-07  Score=66.64  Aligned_cols=97  Identities=8%  Similarity=-0.150  Sum_probs=66.2

Q ss_pred             HHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHhchhCCCCCCHHHHHHHHHH
Q 036275          109 TFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAA  188 (271)
Q Consensus       109 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~  188 (271)
                      ...+..+...+...|++++|+..|+...... +.+...|..+..+|...|++++|.+.|++..... +-+...+..+..+
T Consensus        21 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~   98 (148)
T 2vgx_A           21 LEQLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD-IXEPRFPFHAAEC   98 (148)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHH
Confidence            3455666667777777777777777776653 4456677777777777777777777777766542 2245666777777


Q ss_pred             HHhcCCHHHHHHHHHHHHH
Q 036275          189 YSRKKLYRRCLEIFEEMID  207 (271)
Q Consensus       189 ~~~~g~~~~a~~~~~~m~~  207 (271)
                      +...|++++|...|+...+
T Consensus        99 ~~~~g~~~~A~~~~~~al~  117 (148)
T 2vgx_A           99 LLQXGELAEAESGLFLAQE  117 (148)
T ss_dssp             HHHTTCHHHHHHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHH
Confidence            7777777777777777665

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=98.62  E-value=7.4e-07  Score=59.30  Aligned_cols=100  Identities=9%  Similarity=0.022  Sum_probs=59.4

Q ss_pred             hhhHHHHHHHHHcCCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC--CHHHHHHHH
Q 036275          144 ISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYP--DGGTAKVLI  221 (271)
Q Consensus       144 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p--~~~~~~~l~  221 (271)
                      ...+..+...+...|++++|...|++..+.. +.+...+..+...+...|++++|...+++..+.. +.  +...+..+.
T Consensus         6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l~   83 (112)
T 2kck_A            6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAKA   83 (112)
T ss_dssp             TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHHH
Confidence            4455556666666666666666666655442 2245556666666666666666666666666542 22  355566666


Q ss_pred             HHHhcc-CcHHHHHHHHHHHHhccc
Q 036275          222 SACSSE-DQIEQVTTLVRTMHKDMK  245 (271)
Q Consensus       222 ~~~~~~-g~~~~a~~~~~~~~~~~~  245 (271)
                      .++... |++++|.+.+++..+..+
T Consensus        84 ~~~~~~~~~~~~A~~~~~~~~~~~p  108 (112)
T 2kck_A           84 DALRYIEGKEVEAEIAEARAKLEHH  108 (112)
T ss_dssp             HHHTTCSSCSHHHHHHHHHHGGGCC
T ss_pred             HHHHHHhCCHHHHHHHHHHHhhccc
Confidence            666666 666666666666655544

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=98.61  E-value=1.5e-06  Score=59.60  Aligned_cols=98  Identities=13%  Similarity=0.005  Sum_probs=67.8

Q ss_pred             HHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHhchhCCCCCCHHHHHHHHHH
Q 036275          109 TFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAA  188 (271)
Q Consensus       109 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~  188 (271)
                      ...+..+...+.+.|++++|+..|++..+.. +.+...|..+..++.+.|++++|.+.+++..+.. +-+...|..+..+
T Consensus         4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~   81 (126)
T 3upv_A            4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATA   81 (126)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHH
Confidence            3456666677777777777777777776653 4456777777777777777777777777766652 2245667777777


Q ss_pred             HHhcCCHHHHHHHHHHHHHC
Q 036275          189 YSRKKLYRRCLEIFEEMIDA  208 (271)
Q Consensus       189 ~~~~g~~~~a~~~~~~m~~~  208 (271)
                      +...|++++|...|++..+.
T Consensus        82 ~~~~~~~~~A~~~~~~al~~  101 (126)
T 3upv_A           82 QIAVKEYASALETLDAARTK  101 (126)
T ss_dssp             HHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHhCHHHHHHHHHHHHHh
Confidence            77777777777777776653

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=98.61  E-value=3.9e-06  Score=56.20  Aligned_cols=106  Identities=15%  Similarity=-0.060  Sum_probs=86.6

Q ss_pred             chHHHHHH--hcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 036275           44 PNLFVFIF--SIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGR  121 (271)
Q Consensus        44 y~~ll~~~--~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~  121 (271)
                      |..+...+  .|++++|.+.|++..+.. +.+...+..+...+...|++++|...+++..+.. +.+...+..+..++..
T Consensus         7 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~   84 (118)
T 1elw_A            7 LKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAALEF   84 (118)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHH
Confidence            34445555  999999999999998875 5588899999999999999999999999998874 3367788899999999


Q ss_pred             cCCHhHHHHHHHHHHhCCCCCChhhHHHHHH
Q 036275          122 LGQFEKMEEVLTAMEKGSYAADISTYNILIN  152 (271)
Q Consensus       122 ~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~  152 (271)
                      .|++++|.+.++...+.. +.+...+..+..
T Consensus        85 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~  114 (118)
T 1elw_A           85 LNRFEEAKRTYEEGLKHE-ANNPQLKEGLQN  114 (118)
T ss_dssp             TTCHHHHHHHHHHHHTTC-TTCHHHHHHHHH
T ss_pred             HhhHHHHHHHHHHHHHcC-CCCHHHHHHHHH
Confidence            999999999999998863 344555554443

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=98.60  E-value=8e-08  Score=71.87  Aligned_cols=88  Identities=9%  Similarity=-0.095  Sum_probs=45.6

Q ss_pred             hhHHHHHHHHHcCCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 036275          145 STYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISAC  224 (271)
Q Consensus       145 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~  224 (271)
                      ..+..+..+|.+.|++++|...+++..... +.+...+..+..++...|++++|...|++..+.. +-+...+..+..++
T Consensus        89 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~  166 (198)
T 2fbn_A           89 SCNLNLATCYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASLN-PNNLDIRNSYELCV  166 (198)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHH
Confidence            455555556666666666666666555432 2244555556666666666666666666655432 22344444444444


Q ss_pred             hccCcHHHHH
Q 036275          225 SSEDQIEQVT  234 (271)
Q Consensus       225 ~~~g~~~~a~  234 (271)
                      ...++.+++.
T Consensus       167 ~~~~~~~~~~  176 (198)
T 2fbn_A          167 NKLKEARKKD  176 (198)
T ss_dssp             HHHHHHHC--
T ss_pred             HHHHHHHHHH
Confidence            4444444433

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=98.60  E-value=2.8e-07  Score=65.04  Aligned_cols=92  Identities=11%  Similarity=-0.041  Sum_probs=40.6

Q ss_pred             HHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHcC
Q 036275           78 MLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRG  157 (271)
Q Consensus        78 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~  157 (271)
                      ..+...+.+.|++++|...|++..... +.+...|..+..++...|++++|...|+...+.. +.+...+..+..+|...
T Consensus        22 ~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~   99 (142)
T 2xcb_A           22 YALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMD-INEPRFPFHAAECHLQL   99 (142)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHHc
Confidence            334444444444444444444444432 1133444444444444444444444444444432 22334444444444444


Q ss_pred             CCHHHHHHHHHhch
Q 036275          158 GFIEKMEGLFQSLP  171 (271)
Q Consensus       158 g~~~~a~~~~~~m~  171 (271)
                      |++++|.+.|+...
T Consensus       100 g~~~~A~~~~~~al  113 (142)
T 2xcb_A          100 GDLDGAESGFYSAR  113 (142)
T ss_dssp             TCHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHH
Confidence            44444444444443

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=98.60  E-value=1e-06  Score=60.97  Aligned_cols=95  Identities=12%  Similarity=0.012  Sum_probs=44.2

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhCC--CCCC----hhhHHH
Q 036275           76 SHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGS--YAAD----ISTYNI  149 (271)
Q Consensus        76 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~--~~~~----~~~~~~  149 (271)
                      .+..+...+.+.|++++|+..|++..+.. +-+...|..+..+|.+.|++++|++.+++..+..  ..++    ..+|..
T Consensus        10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~   88 (127)
T 4gcn_A           10 AEKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSR   88 (127)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHH
Confidence            34445555555555555555555555442 1234445555555555555555555555444321  0000    123334


Q ss_pred             HHHHHHcCCCHHHHHHHHHhch
Q 036275          150 LINIYGRGGFIEKMEGLFQSLP  171 (271)
Q Consensus       150 li~~~~~~g~~~~a~~~~~~m~  171 (271)
                      +..++...|++++|.+.|++..
T Consensus        89 lg~~~~~~~~~~~A~~~~~kal  110 (127)
T 4gcn_A           89 AGNAFQKQNDLSLAVQWFHRSL  110 (127)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHH
Confidence            4444444445555555444443

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=98.59  E-value=5.5e-06  Score=69.34  Aligned_cols=191  Identities=9%  Similarity=-0.013  Sum_probs=139.0

Q ss_pred             hcCHHHHHHHHHHHHHcCCCCC----------------HHHHHHHHHHHHhcCChHHHHHHHHHHHHCC-CCCCH----H
Q 036275           52 SIYFSDAHAVFEEMKRLGITPT----------------MKSHMLLLTAYSKTGNVAKCEGVINQMHKSG-LKPDT----F  110 (271)
Q Consensus        52 ~g~~~~A~~~~~~~~~~~~~~~----------------~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~-~~~~~----~  110 (271)
                      .|++++|++.|..+.+..-...                ...+..+...|...|++++|.+++.++...- ..++.    .
T Consensus        17 ~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~   96 (434)
T 4b4t_Q           17 EKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKV   96 (434)
T ss_dssp             HTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHH
Confidence            8999999999999987642211                1247789999999999999999998876531 11122    2


Q ss_pred             HHHHHHHHHHccCCHhHHHHHHHHHHh----CCCCCC-hhhHHHHHHHHHcCCCHHHHHHHHHhchhC----CCCCC-HH
Q 036275          111 VINSMLNLYGRLGQFEKMEEVLTAMEK----GSYAAD-ISTYNILINIYGRGGFIEKMEGLFQSLPAK----RLKPD-VV  180 (271)
Q Consensus       111 ~~~~li~~~~~~g~~~~a~~~~~~m~~----~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~~~-~~  180 (271)
                      +.+.+-..+...|+.+++.++++....    .+..+. ..++..+...|...|++++|..+++++...    +-.+. ..
T Consensus        97 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~  176 (434)
T 4b4t_Q           97 LKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVD  176 (434)
T ss_dssp             HHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHH
T ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHH
Confidence            233444455567899999999887653    232333 567888999999999999999999986532    11222 45


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHH----CCCCCC--HHHHHHHHHHHhccCcHHHHHHHHHHHHh
Q 036275          181 TWTSRLAAYSRKKLYRRCLEIFEEMID----AGCYPD--GGTAKVLISACSSEDQIEQVTTLVRTMHK  242 (271)
Q Consensus       181 ~~~~li~~~~~~g~~~~a~~~~~~m~~----~~~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~  242 (271)
                      ++..+++.|...|++++|..++++...    .+.++.  ...+..+...+...|++++|...+.+..+
T Consensus       177 ~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~  244 (434)
T 4b4t_Q          177 VHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE  244 (434)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence            788899999999999999999988654    221111  24566777788899999999998887754

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=98.59  E-value=6.8e-07  Score=61.26  Aligned_cols=97  Identities=12%  Similarity=0.067  Sum_probs=46.6

Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCC--CCC----hhhHH
Q 036275           75 KSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSY--AAD----ISTYN  148 (271)
Q Consensus        75 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~--~~~----~~~~~  148 (271)
                      ..|..+...+...|++++|...|++..+.. +.+...+..+...+...|++++|...+++..+...  .++    ..++.
T Consensus         5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (131)
T 1elr_A            5 LKEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA   83 (131)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence            344445555555555555555555554432 22344455555555555555555555555443310  011    33444


Q ss_pred             HHHHHHHcCCCHHHHHHHHHhchh
Q 036275          149 ILINIYGRGGFIEKMEGLFQSLPA  172 (271)
Q Consensus       149 ~li~~~~~~g~~~~a~~~~~~m~~  172 (271)
                      .+..++...|++++|.+.|++...
T Consensus        84 ~la~~~~~~~~~~~A~~~~~~~~~  107 (131)
T 1elr_A           84 RIGNSYFKEEKYKDAIHFYNKSLA  107 (131)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhccHHHHHHHHHHHHH
Confidence            445555555555555555555444

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=98.59  E-value=1.4e-06  Score=60.27  Aligned_cols=107  Identities=12%  Similarity=0.105  Sum_probs=77.8

Q ss_pred             HHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHhchhCC--CCCC----HHHHH
Q 036275          110 FVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR--LKPD----VVTWT  183 (271)
Q Consensus       110 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g--~~~~----~~~~~  183 (271)
                      ..+..+...+.+.|++++|++.|++..+.. |.+...|..+..+|.+.|++++|++.+++..+..  ..++    ..+|.
T Consensus         9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~   87 (127)
T 4gcn_A            9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMS   87 (127)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHH
Confidence            456778888888889999998888888763 4567788888888888888888888888876531  1111    13566


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 036275          184 SRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKV  219 (271)
Q Consensus       184 ~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~  219 (271)
                      .+..++...|++++|.+.|++.++.  .||..+...
T Consensus        88 ~lg~~~~~~~~~~~A~~~~~kal~~--~~~~~~~~~  121 (127)
T 4gcn_A           88 RAGNAFQKQNDLSLAVQWFHRSLSE--FRDPELVKK  121 (127)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHH--SCCHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhh--CcCHHHHHH
Confidence            7777778888888888888887663  456554443

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=98.58  E-value=1.8e-06  Score=60.02  Aligned_cols=97  Identities=5%  Similarity=-0.159  Sum_probs=51.8

Q ss_pred             CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChhhHHHHHH
Q 036275           73 TMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILIN  152 (271)
Q Consensus        73 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~  152 (271)
                      ++..|..+...+...|++++|...|++..+.. +.+...+..+..++...|++++|...++...+.. +.+...+..+..
T Consensus         8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~   85 (137)
T 3q49_B            8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQ   85 (137)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHHHHHH
Confidence            45555555555555555666655555555443 1234455555555555555555555555555442 233445555555


Q ss_pred             HHHcCCCHHHHHHHHHhch
Q 036275          153 IYGRGGFIEKMEGLFQSLP  171 (271)
Q Consensus       153 ~~~~~g~~~~a~~~~~~m~  171 (271)
                      ++...|++++|...|++..
T Consensus        86 ~~~~~~~~~~A~~~~~~a~  104 (137)
T 3q49_B           86 CQLEMESYDEAIANLQRAY  104 (137)
T ss_dssp             HHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHhhHHHHHHHHHHHH
Confidence            5555555555555555544

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=98.57  E-value=1.9e-06  Score=64.26  Aligned_cols=153  Identities=9%  Similarity=0.011  Sum_probs=95.8

Q ss_pred             hcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC---------------HHHHHHHH
Q 036275           52 SIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPD---------------TFVINSML  116 (271)
Q Consensus        52 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~---------------~~~~~~li  116 (271)
                      .|.++.+.+.|+.-.... ......+..+...+...|++++|+..|++..+....-.               ...+..+.
T Consensus        17 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la   95 (198)
T 2fbn_A           17 LYFQGAKKSIYDYTDEEK-VQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLA   95 (198)
T ss_dssp             -----CCCSGGGCCHHHH-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhccccCchhhCCHHHH-HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHH
Confidence            455555555554322211 12345566677777778888888888877776532111               26777888


Q ss_pred             HHHHccCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCCHH
Q 036275          117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYR  196 (271)
Q Consensus       117 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~  196 (271)
                      .++...|++++|+..++...+.. +.+...+..+..+|...|++++|.+.|++..... +-+...+..+...+...++.+
T Consensus        96 ~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~  173 (198)
T 2fbn_A           96 TCYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASLN-PNNLDIRNSYELCVNKLKEAR  173 (198)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhcCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHHHHH
Confidence            88888899999988888887763 4567788888888888999999999888877652 224567777777777777666


Q ss_pred             HHH-HHHHHHHH
Q 036275          197 RCL-EIFEEMID  207 (271)
Q Consensus       197 ~a~-~~~~~m~~  207 (271)
                      ++. ..+..|..
T Consensus       174 ~~~~~~~~~~f~  185 (198)
T 2fbn_A          174 KKDKLTFGGMFD  185 (198)
T ss_dssp             C-----------
T ss_pred             HHHHHHHHHHhc
Confidence            665 44444443

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=98.53  E-value=8.3e-07  Score=60.83  Aligned_cols=111  Identities=9%  Similarity=0.085  Sum_probs=78.5

Q ss_pred             HHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHhchhCCC--CCC----HHHH
Q 036275          109 TFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL--KPD----VVTW  182 (271)
Q Consensus       109 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~--~~~----~~~~  182 (271)
                      ...+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|...+++......  .++    ..++
T Consensus         4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~   82 (131)
T 1elr_A            4 ALKEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAY   82 (131)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHH
Confidence            3456677778888888888888888877753 45677777888888888888888888887765421  112    5667


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 036275          183 TSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLIS  222 (271)
Q Consensus       183 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~  222 (271)
                      ..+...+...|++++|...+++..+.  .|+......+..
T Consensus        83 ~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~  120 (131)
T 1elr_A           83 ARIGNSYFKEEKYKDAIHFYNKSLAE--HRTPDVLKKCQQ  120 (131)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHH
T ss_pred             HHHHHHHHHhccHHHHHHHHHHHHHh--CCCHHHHHHHHH
Confidence            77777888888888888888887764  345554444433

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=98.53  E-value=1.3e-05  Score=65.01  Aligned_cols=172  Identities=11%  Similarity=-0.006  Sum_probs=108.9

Q ss_pred             hcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC-ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc-C-CHhHH
Q 036275           52 SIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTG-NVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRL-G-QFEKM  128 (271)
Q Consensus        52 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~-~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~-g-~~~~a  128 (271)
                      .+..++|+++++++...+ |-+..+|+.--..+...| .+++++.+++.+.....+ +..+|+.-...+... + +++++
T Consensus        67 ~e~se~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPK-ny~aW~hR~wlL~~l~~~~~~~E  144 (349)
T 3q7a_A           67 EEKSERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLK-SYQVWHHRLLLLDRISPQDPVSE  144 (349)
T ss_dssp             TCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCC-CHHHHHHHHHHHHHHCCSCCHHH
T ss_pred             CCCCHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHhcCCChHHH
Confidence            445567888888877776 556677777666666666 477888888777776533 555666655555554 5 67777


Q ss_pred             HHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHH--------HHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCC------
Q 036275          129 EEVLTAMEKGSYAADISTYNILINIYGRGGFIE--------KMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKL------  194 (271)
Q Consensus       129 ~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~--------~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~------  194 (271)
                      +++++.+.+.. +.+..+|+.-.-.+.+.|.++        ++++.++++.+... -|...|+.....+.+.+.      
T Consensus       145 L~~~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp-~N~SAW~~R~~lL~~l~~~~~~~~  222 (349)
T 3q7a_A          145 IEYIHGSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDG-RNNSAWGWRWYLRVSRPGAETSSR  222 (349)
T ss_dssp             HHHHHHHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHTTSTTCCCCHH
T ss_pred             HHHHHHHHHhC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhccccccchH
Confidence            77777777653 445666665555555555554        77777777766532 256677777666666654      


Q ss_pred             -HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC
Q 036275          195 -YRRCLEIFEEMIDAGCYPDGGTAKVLISACSSED  228 (271)
Q Consensus       195 -~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g  228 (271)
                       ++++++.+++..... +-|...|..+-..+.+.|
T Consensus       223 ~~~eELe~~~~aI~~~-P~n~SaW~Ylr~Ll~~~~  256 (349)
T 3q7a_A          223 SLQDELIYILKSIHLI-PHNVSAWNYLRGFLKHFS  256 (349)
T ss_dssp             HHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcC
Confidence             566777777666543 335566655444444433

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.53  E-value=8.5e-06  Score=57.10  Aligned_cols=96  Identities=11%  Similarity=-0.087  Sum_probs=45.0

Q ss_pred             HHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCC----hhhHHHHHHHHHcCCCHHHHHHHHHhchhCCCCCCHHHHHH
Q 036275          109 TFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAAD----ISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTS  184 (271)
Q Consensus       109 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~  184 (271)
                      ...+..+...+...|++++|.+.|++..+.  .|+    ...+..+..+|...|++++|.+.+++..... +.+...+..
T Consensus        28 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~  104 (148)
T 2dba_A           28 VEQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKALYR  104 (148)
T ss_dssp             HHHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHHHHH
Confidence            334444444444555555555555544443  222    3444444455555555555555555444331 113344444


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHH
Q 036275          185 RLAAYSRKKLYRRCLEIFEEMID  207 (271)
Q Consensus       185 li~~~~~~g~~~~a~~~~~~m~~  207 (271)
                      +..++...|++++|...|++..+
T Consensus       105 ~a~~~~~~~~~~~A~~~~~~al~  127 (148)
T 2dba_A          105 RSQALEKLGRLDQAVLDLQRCVS  127 (148)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHH
Confidence            55555555555555555555444

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.52  E-value=4.5e-06  Score=58.57  Aligned_cols=99  Identities=9%  Similarity=0.003  Sum_probs=71.5

Q ss_pred             CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChhhH
Q 036275           72 PTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPD----TFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTY  147 (271)
Q Consensus        72 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~  147 (271)
                      .+...+..+...+...|++++|...|++..+.  .|+    ...+..+...+...|++++|...+++..+.. +.+...+
T Consensus        26 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~  102 (148)
T 2dba_A           26 SSVEQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKAL  102 (148)
T ss_dssp             CCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHHH
T ss_pred             HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHHH
Confidence            35666777777777778888888888777765  344    4566777777777888888888877776652 3456677


Q ss_pred             HHHHHHHHcCCCHHHHHHHHHhchhC
Q 036275          148 NILINIYGRGGFIEKMEGLFQSLPAK  173 (271)
Q Consensus       148 ~~li~~~~~~g~~~~a~~~~~~m~~~  173 (271)
                      ..+..++...|++++|.+.|++....
T Consensus       103 ~~~a~~~~~~~~~~~A~~~~~~al~~  128 (148)
T 2dba_A          103 YRRSQALEKLGRLDQAVLDLQRCVSL  128 (148)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence            77777788888888888888777654

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=98.52  E-value=2.1e-06  Score=61.90  Aligned_cols=98  Identities=10%  Similarity=-0.066  Sum_probs=59.1

Q ss_pred             CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChhhHHHHHH
Q 036275           73 TMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILIN  152 (271)
Q Consensus        73 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~  152 (271)
                      +...|..+...+.+.|++++|+..|++..+.. +-+...|..+..+|...|++++|+..+++..+.. +.+...|..+..
T Consensus        10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~   87 (164)
T 3sz7_A           10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSRLGL   87 (164)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence            34555566666666666666666666666553 2245556666666666666666666666665542 334556666666


Q ss_pred             HHHcCCCHHHHHHHHHhchh
Q 036275          153 IYGRGGFIEKMEGLFQSLPA  172 (271)
Q Consensus       153 ~~~~~g~~~~a~~~~~~m~~  172 (271)
                      +|...|++++|.+.|++..+
T Consensus        88 ~~~~~g~~~~A~~~~~~al~  107 (164)
T 3sz7_A           88 ARFDMADYKGAKEAYEKGIE  107 (164)
T ss_dssp             HHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHccCHHHHHHHHHHHHH
Confidence            66666666666666666554

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=98.52  E-value=3.4e-06  Score=60.86  Aligned_cols=99  Identities=16%  Similarity=0.052  Sum_probs=84.9

Q ss_pred             CHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHhchhCCCCCCHHHHHHHHH
Q 036275          108 DTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLA  187 (271)
Q Consensus       108 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~  187 (271)
                      +...+..+...+...|++++|++.|++..+.. +.+...|..+..+|.+.|++++|...|++..+.. +-+...|..+..
T Consensus        10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~   87 (164)
T 3sz7_A           10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSRLGL   87 (164)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence            45678888889999999999999999988863 4578889999999999999999999999988763 235788999999


Q ss_pred             HHHhcCCHHHHHHHHHHHHHC
Q 036275          188 AYSRKKLYRRCLEIFEEMIDA  208 (271)
Q Consensus       188 ~~~~~g~~~~a~~~~~~m~~~  208 (271)
                      ++...|++++|...|++..+.
T Consensus        88 ~~~~~g~~~~A~~~~~~al~~  108 (164)
T 3sz7_A           88 ARFDMADYKGAKEAYEKGIEA  108 (164)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHccCHHHHHHHHHHHHHh
Confidence            999999999999999998764

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=98.52  E-value=2.5e-06  Score=72.83  Aligned_cols=114  Identities=11%  Similarity=-0.070  Sum_probs=94.7

Q ss_pred             hcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHhHHHHH
Q 036275           52 SIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEV  131 (271)
Q Consensus        52 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~  131 (271)
                      .|++++|++.|++..+.. +.+..+|..+..++.+.|++++|++.+++..+... -+...+..+..+|...|++++|.+.
T Consensus        19 ~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p-~~~~~~~~lg~~~~~~g~~~eA~~~   96 (477)
T 1wao_1           19 AKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDK-KYIKGYYRRAASNMALGKFRAALRD   96 (477)
T ss_dssp             TTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCT-TCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred             hCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHH
Confidence            899999999999998875 55799999999999999999999999999998853 3678899999999999999999999


Q ss_pred             HHHHHhCCCCCChhhHHHHHHH--HHcCCCHHHHHHHHH
Q 036275          132 LTAMEKGSYAADISTYNILINI--YGRGGFIEKMEGLFQ  168 (271)
Q Consensus       132 ~~~m~~~~~~~~~~~~~~li~~--~~~~g~~~~a~~~~~  168 (271)
                      +++..+.. +.+...+..+..+  +.+.|++++|.+.++
T Consensus        97 ~~~al~~~-p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~  134 (477)
T 1wao_1           97 YETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDE  134 (477)
T ss_dssp             HHHHHHHS-TTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred             HHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence            99988763 3345566666666  888999999999998

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=98.50  E-value=4.3e-06  Score=58.00  Aligned_cols=99  Identities=7%  Similarity=-0.104  Sum_probs=69.9

Q ss_pred             CCHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHhchhCCCCCCHHHHHHHH
Q 036275          107 PDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRL  186 (271)
Q Consensus       107 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li  186 (271)
                      .+...+..+...+...|++++|...|+...+.. +.+...+..+..++...|++++|...+++..... +.+...+..+.
T Consensus         7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~   84 (137)
T 3q49_B            7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLG   84 (137)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHHHHH
Confidence            356667777777777777777777777776653 4456677777777777777777777777776643 22456777777


Q ss_pred             HHHHhcCCHHHHHHHHHHHHH
Q 036275          187 AAYSRKKLYRRCLEIFEEMID  207 (271)
Q Consensus       187 ~~~~~~g~~~~a~~~~~~m~~  207 (271)
                      .++...|++++|...|++..+
T Consensus        85 ~~~~~~~~~~~A~~~~~~a~~  105 (137)
T 3q49_B           85 QCQLEMESYDEAIANLQRAYS  105 (137)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHhhHHHHHHHHHHHHH
Confidence            777777777777777777654

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=98.48  E-value=2.7e-06  Score=59.83  Aligned_cols=97  Identities=7%  Similarity=-0.135  Sum_probs=70.6

Q ss_pred             HHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHH
Q 036275          110 FVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAY  189 (271)
Q Consensus       110 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~  189 (271)
                      ..+..+...+.+.|++++|...|+...... +.+...|..+..++.+.|++++|...|++..... +-+...+..+..++
T Consensus        19 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~   96 (142)
T 2xcb_A           19 EQLYALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMD-INEPRFPFHAAECH   96 (142)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHH
Confidence            345556667778888888888888777653 4467777778888888888888888888777653 22456677777778


Q ss_pred             HhcCCHHHHHHHHHHHHHC
Q 036275          190 SRKKLYRRCLEIFEEMIDA  208 (271)
Q Consensus       190 ~~~g~~~~a~~~~~~m~~~  208 (271)
                      ...|++++|...|+...+.
T Consensus        97 ~~~g~~~~A~~~~~~al~~  115 (142)
T 2xcb_A           97 LQLGDLDGAESGFYSARAL  115 (142)
T ss_dssp             HHTTCHHHHHHHHHHHHHH
T ss_pred             HHcCCHHHHHHHHHHHHHh
Confidence            8888888888888777653

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=98.42  E-value=1.7e-06  Score=61.41  Aligned_cols=132  Identities=17%  Similarity=0.011  Sum_probs=65.7

Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCC-CC----HHHHHHHHHHHHccCCHhHHHHHHHHHHhC----CCCC-Ch
Q 036275           75 KSHMLLLTAYSKTGNVAKCEGVINQMHKSGLK-PD----TFVINSMLNLYGRLGQFEKMEEVLTAMEKG----SYAA-DI  144 (271)
Q Consensus        75 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~-~~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~~-~~  144 (271)
                      .++..+...+...|++++|+..+++..+.... ++    ...+..+...+...|++++|.+.+++..+.    +-++ ..
T Consensus        10 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~   89 (164)
T 3ro3_A           10 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEA   89 (164)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHH
Confidence            34555666666666666666666655432100 01    124555666666666666666666655432    1001 13


Q ss_pred             hhHHHHHHHHHcCCCHHHHHHHHHhchhC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 036275          145 STYNILINIYGRGGFIEKMEGLFQSLPAK----RLKP-DVVTWTSRLAAYSRKKLYRRCLEIFEEMI  206 (271)
Q Consensus       145 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~  206 (271)
                      ..+..+...+...|++++|.+.+++....    +..+ ...++..+...+...|++++|...+++..
T Consensus        90 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~  156 (164)
T 3ro3_A           90 QSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHL  156 (164)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence            34555555566666666666665554321    1000 01234444455555555555555555443

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=98.39  E-value=2.2e-05  Score=53.70  Aligned_cols=85  Identities=13%  Similarity=0.042  Sum_probs=44.3

Q ss_pred             hcCHHHHHHHHHHHHHcCCCCCH---HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHccCCH
Q 036275           52 SIYFSDAHAVFEEMKRLGITPTM---KSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPD---TFVINSMLNLYGRLGQF  125 (271)
Q Consensus        52 ~g~~~~A~~~~~~~~~~~~~~~~---~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~---~~~~~~li~~~~~~g~~  125 (271)
                      .|++++|.+.|+...+.. +.+.   ..+..+..++.+.|++++|...|++..+.... +   ...+..+..++...|++
T Consensus        15 ~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~la~~~~~~g~~   92 (129)
T 2xev_A           15 NGKYDDASQLFLSFLELY-PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPT-HDKAAGGLLKLGLSQYGEGKN   92 (129)
T ss_dssp             TTCHHHHHHHHHHHHHHC-SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-STTHHHHHHHHHHHHHHTTCH
T ss_pred             hCCHHHHHHHHHHHHHHC-CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCC-CcccHHHHHHHHHHHHHcCCH
Confidence            566666666666555543 2222   34555555555556666666665555544211 1   34444555555555555


Q ss_pred             hHHHHHHHHHHhC
Q 036275          126 EKMEEVLTAMEKG  138 (271)
Q Consensus       126 ~~a~~~~~~m~~~  138 (271)
                      ++|...|+.+.+.
T Consensus        93 ~~A~~~~~~~~~~  105 (129)
T 2xev_A           93 TEAQQTLQQVATQ  105 (129)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            5555555555543

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=98.38  E-value=3.2e-06  Score=57.84  Aligned_cols=22  Identities=5%  Similarity=0.010  Sum_probs=8.2

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHH
Q 036275          183 TSRLAAYSRKKLYRRCLEIFEE  204 (271)
Q Consensus       183 ~~li~~~~~~g~~~~a~~~~~~  204 (271)
                      ..+..++...|++++|...+++
T Consensus        89 ~~la~~~~~~g~~~~A~~~~~~  110 (121)
T 1hxi_A           89 AALAVSHTNEHNANAALASLRA  110 (121)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHH
Confidence            3333333333333333333333

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=98.37  E-value=5.5e-06  Score=65.09  Aligned_cols=139  Identities=11%  Similarity=0.010  Sum_probs=106.4

Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCC--hhhHHHHHHHH
Q 036275           77 HMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAAD--ISTYNILINIY  154 (271)
Q Consensus        77 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~--~~~~~~li~~~  154 (271)
                      +-.....+...|++++|.++|+.+...+  |+......+...+.+.+++++|+..|+...... .|.  ...+..+..++
T Consensus       105 ~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~a~~~LG~al  181 (282)
T 4f3v_A          105 TMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGAAGVAHGVAA  181 (282)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHHHHHHHHHHH
Confidence            3446677889999999999999888764  444455666678899999999999998654432 121  34678889999


Q ss_pred             HcCCCHHHHHHHHHhchhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 036275          155 GRGGFIEKMEGLFQSLPAKRLKPD--VVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVL  220 (271)
Q Consensus       155 ~~~g~~~~a~~~~~~m~~~g~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l  220 (271)
                      ...|++++|++.|++.......|.  .........++.+.|+.++|..+|+++...  .|+......|
T Consensus       182 ~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~--~P~~~~~~aL  247 (282)
T 4f3v_A          182 ANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT--HPEPKVAAAL  247 (282)
T ss_dssp             HHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--SCCHHHHHHH
T ss_pred             HHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcHHHHHHH
Confidence            999999999999999875433254  346777788889999999999999999986  4664444443

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=98.36  E-value=5.6e-06  Score=56.61  Aligned_cols=93  Identities=10%  Similarity=-0.120  Sum_probs=50.0

Q ss_pred             HHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHcC
Q 036275           78 MLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRG  157 (271)
Q Consensus        78 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~  157 (271)
                      ..+...+.+.|++++|+..|++..+.. +-+...|..+..++...|++++|+..+++..+.. +.+...+..+..++...
T Consensus        21 ~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~~~~~la~~~~~~   98 (121)
T 1hxi_A           21 MEEGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNE   98 (121)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHc
Confidence            344445555555666666555555542 1244455555555555566666666555555542 23445555555555555


Q ss_pred             CCHHHHHHHHHhchh
Q 036275          158 GFIEKMEGLFQSLPA  172 (271)
Q Consensus       158 g~~~~a~~~~~~m~~  172 (271)
                      |++++|...+++..+
T Consensus        99 g~~~~A~~~~~~al~  113 (121)
T 1hxi_A           99 HNANAALASLRAWLL  113 (121)
T ss_dssp             HHHHHHHHHHHHHHC
T ss_pred             CCHHHHHHHHHHHHH
Confidence            666666655555544

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=98.35  E-value=8.1e-06  Score=55.93  Aligned_cols=92  Identities=9%  Similarity=-0.034  Sum_probs=46.2

Q ss_pred             HHHHHHhcCChHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCC---hhhHHHHHHH
Q 036275           80 LLTAYSKTGNVAKCEGVINQMHKSGLKPDT---FVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAAD---ISTYNILINI  153 (271)
Q Consensus        80 li~~~~~~~~~~~a~~~~~~m~~~~~~~~~---~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~---~~~~~~li~~  153 (271)
                      +...+...|++++|...|++..+.... +.   ..+..+..++...|++++|...++...+.. +.+   ...+..+..+
T Consensus         8 ~a~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~la~~   85 (129)
T 2xev_A            8 VAFDALKNGKYDDASQLFLSFLELYPN-GVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY-PTHDKAAGGLLKLGLS   85 (129)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCSS-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTSTTHHHHHHHHHHH
T ss_pred             HHHHHHHhCCHHHHHHHHHHHHHHCCC-CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC-CCCcccHHHHHHHHHH
Confidence            344455555666666666555543211 11   344445555555555555555555555432 122   3444455555


Q ss_pred             HHcCCCHHHHHHHHHhchhC
Q 036275          154 YGRGGFIEKMEGLFQSLPAK  173 (271)
Q Consensus       154 ~~~~g~~~~a~~~~~~m~~~  173 (271)
                      +...|++++|.+.|+++...
T Consensus        86 ~~~~g~~~~A~~~~~~~~~~  105 (129)
T 2xev_A           86 QYGEGKNTEAQQTLQQVATQ  105 (129)
T ss_dssp             HHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHH
Confidence            55555555555555555443

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=98.34  E-value=3.7e-06  Score=59.68  Aligned_cols=134  Identities=13%  Similarity=0.043  Sum_probs=100.9

Q ss_pred             HHHHHHHHHHHccCCHhHHHHHHHHHHhCCCC-CC----hhhHHHHHHHHHcCCCHHHHHHHHHhchhC----CCCC-CH
Q 036275          110 FVINSMLNLYGRLGQFEKMEEVLTAMEKGSYA-AD----ISTYNILINIYGRGGFIEKMEGLFQSLPAK----RLKP-DV  179 (271)
Q Consensus       110 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~-~~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~~-~~  179 (271)
                      .++..+...+...|++++|.+.+++..+..-. .+    ..++..+...+...|++++|.+.+++....    +-.+ ..
T Consensus        10 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~   89 (164)
T 3ro3_A           10 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEA   89 (164)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHH
Confidence            46778888999999999999999887653100 11    247888999999999999999999986642    1111 13


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHHHhc
Q 036275          180 VTWTSRLAAYSRKKLYRRCLEIFEEMIDA----GCYP-DGGTAKVLISACSSEDQIEQVTTLVRTMHKD  243 (271)
Q Consensus       180 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~  243 (271)
                      ..+..+...+...|++++|...+++..+.    +..+ ...++..+...+...|++++|.+.+++..+.
T Consensus        90 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~  158 (164)
T 3ro3_A           90 QSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI  158 (164)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence            46778888899999999999999887642    2111 1346777888899999999999999987653

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=98.32  E-value=1.2e-05  Score=68.15  Aligned_cols=131  Identities=12%  Similarity=-0.035  Sum_probs=90.2

Q ss_pred             CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC--------------HHHHHHHHHHHHccCCHhHHHHHHHHHHhC
Q 036275           73 TMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPD--------------TFVINSMLNLYGRLGQFEKMEEVLTAMEKG  138 (271)
Q Consensus        73 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~--------------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~  138 (271)
                      ....|..+...+.+.|++++|+..|++..+......              ...|..+..+|.+.|++++|+..+++..+.
T Consensus       267 ~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~  346 (457)
T 1kt0_A          267 QAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGL  346 (457)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence            345677777888888888888888888776532211              466777777888888888888888877775


Q ss_pred             CCCCChhhHHHHHHHHHcCCCHHHHHHHHHhchhCCCCC-CHHHHHHHHHHHHhcCCHHHHHH-HHHHHH
Q 036275          139 SYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP-DVVTWTSRLAAYSRKKLYRRCLE-IFEEMI  206 (271)
Q Consensus       139 ~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~-~~~~~~~li~~~~~~g~~~~a~~-~~~~m~  206 (271)
                      . +.+...|..+..+|...|++++|...|++..+.  .| +...+..+..++...++.+++.+ .++.|.
T Consensus       347 ~-p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l--~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~f  413 (457)
T 1kt0_A          347 D-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV--NPQNKAARLQISMCQKKAKEHNERDRRIYANMF  413 (457)
T ss_dssp             S-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--C----CHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred             C-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3 445777777888888888888888888877765  33 34566777777777777766553 344443

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=98.32  E-value=0.00026  Score=57.36  Aligned_cols=203  Identities=7%  Similarity=-0.036  Sum_probs=148.0

Q ss_pred             chHHHHHH--hc-CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc-C-ChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 036275           44 PNLFVFIF--SI-YFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKT-G-NVAKCEGVINQMHKSGLKPDTFVINSMLNL  118 (271)
Q Consensus        44 y~~ll~~~--~g-~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~-~-~~~~a~~~~~~m~~~~~~~~~~~~~~li~~  118 (271)
                      ||.--..+  .| .++++++.++.+...+ +-+..+|+.-...+.+. + +.++++++++++.+.... +...|+.-.-.
T Consensus        91 Wn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~dpk-Ny~AW~~R~wv  168 (349)
T 3q7a_A           91 WQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDRISPQDPVSEIEYIHGSLLPDPK-NYHTWAYLHWL  168 (349)
T ss_dssp             HHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSSCTT-CHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCC-CHHHHHHHHHH
Confidence            44433344  55 6999999999999887 66888999888777776 7 889999999999987643 77777776666


Q ss_pred             HHccCCHh--------HHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCC-------HHHHHHHHHhchhCCCCCCHHHHH
Q 036275          119 YGRLGQFE--------KMEEVLTAMEKGSYAADISTYNILINIYGRGGF-------IEKMEGLFQSLPAKRLKPDVVTWT  183 (271)
Q Consensus       119 ~~~~g~~~--------~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~-------~~~a~~~~~~m~~~g~~~~~~~~~  183 (271)
                      ..+.|.++        ++++..+++.+.. +-|...|+.....+.+.+.       ++++++.+++..... +-|...|+
T Consensus       169 l~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~-P~n~SaW~  246 (349)
T 3q7a_A          169 YSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLI-PHNVSAWN  246 (349)
T ss_dssp             HHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred             HHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhC-CCCHHHHH
Confidence            65555565        8999999998874 5688899999888888886       688999998877653 33677888


Q ss_pred             HHHHHHHhcCCH--------------------HHHHHHHHHHHHCC-----CCCCHHHHHHHHHHHhccCcHHHHHHHHH
Q 036275          184 SRLAAYSRKKLY--------------------RRCLEIFEEMIDAG-----CYPDGGTAKVLISACSSEDQIEQVTTLVR  238 (271)
Q Consensus       184 ~li~~~~~~g~~--------------------~~a~~~~~~m~~~~-----~~p~~~~~~~l~~~~~~~g~~~~a~~~~~  238 (271)
                      .+-..+.+.|+.                    .+......++...+     -.++......++..|...|+.++|.++++
T Consensus       247 Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~  326 (349)
T 3q7a_A          247 YLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFE  326 (349)
T ss_dssp             HHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence            777777666653                    23333333333221     14678888999999999999999999999


Q ss_pred             HHHhcccchhHH
Q 036275          239 TMHKDMKTALPI  250 (271)
Q Consensus       239 ~~~~~~~~~~~~  250 (271)
                      .+.+...+.-..
T Consensus       327 ~l~~~~dpir~~  338 (349)
T 3q7a_A          327 KLSSEYDQMRAG  338 (349)
T ss_dssp             HHHHTTCGGGHH
T ss_pred             HHHhhhChHHHH
Confidence            997665544333

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=98.29  E-value=4.5e-05  Score=63.73  Aligned_cols=188  Identities=9%  Similarity=0.016  Sum_probs=131.8

Q ss_pred             HHHHHhcCChHHHHHHHHHHHHCCCCCC----------------HHHHHHHHHHHHccCCHhHHHHHHHHHHhC--CCCC
Q 036275           81 LTAYSKTGNVAKCEGVINQMHKSGLKPD----------------TFVINSMLNLYGRLGQFEKMEEVLTAMEKG--SYAA  142 (271)
Q Consensus        81 i~~~~~~~~~~~a~~~~~~m~~~~~~~~----------------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--~~~~  142 (271)
                      ...+.+.|++++|++.|.++.+.....+                ...+..+...|...|++++|.+++..+.+.  .+..
T Consensus        11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~   90 (434)
T 4b4t_Q           11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAK   90 (434)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccc
Confidence            4556788999999999999987632211                124678899999999999999999887642  1111


Q ss_pred             --C-hhhHHHHHHHHHcCCCHHHHHHHHHhchh----CCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHH--CCCC-
Q 036275          143 --D-ISTYNILINIYGRGGFIEKMEGLFQSLPA----KRLKPD-VVTWTSRLAAYSRKKLYRRCLEIFEEMID--AGCY-  211 (271)
Q Consensus       143 --~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~----~g~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~--~~~~-  211 (271)
                        . ..+.+.+...+...|+.++|.++++....    .+..+. ..++..+...+...|++++|..++++...  .+.. 
T Consensus        91 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~  170 (434)
T 4b4t_Q           91 SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDD  170 (434)
T ss_dssp             HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSC
T ss_pred             hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhccc
Confidence              1 12344455556678999999999887653    333333 45788899999999999999999998764  2211 


Q ss_pred             -C-CHHHHHHHHHHHhccCcHHHHHHHHHHHHhcc---cchhH-------HHHHHHhhccccccchhhh
Q 036275          212 -P-DGGTAKVLISACSSEDQIEQVTTLVRTMHKDM---KTALP-------IYFNLYGEKGVARSNLGQY  268 (271)
Q Consensus       212 -p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~---~~~~~-------~~~~~~~~~G~~~~a~~~~  268 (271)
                       + ...++..+.+.|...|++++|..++++.....   ..+..       .....+...|++++|...|
T Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~  239 (434)
T 4b4t_Q          171 KPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYF  239 (434)
T ss_dssp             STHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHH
T ss_pred             chhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence             1 24578888999999999999999999876432   11111       1233456677777776554

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=98.28  E-value=1.2e-05  Score=57.78  Aligned_cols=99  Identities=8%  Similarity=-0.010  Sum_probs=61.1

Q ss_pred             HHHHHHHHHHHHhcCChHHHHHHHHHHHHC-------CC----------CCCHHHHHHHHHHHHccCCHhHHHHHHHHHH
Q 036275           74 MKSHMLLLTAYSKTGNVAKCEGVINQMHKS-------GL----------KPDTFVINSMLNLYGRLGQFEKMEEVLTAME  136 (271)
Q Consensus        74 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-------~~----------~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~  136 (271)
                      +..+......+.+.|++++|+..|.+..+.       .-          +.+...|..+..+|.+.|++++|+..++...
T Consensus        11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al   90 (162)
T 3rkv_A           11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL   90 (162)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence            445666777777778888877777776653       00          1122455666666666666666666666666


Q ss_pred             hCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHhchhC
Q 036275          137 KGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAK  173 (271)
Q Consensus       137 ~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~  173 (271)
                      +.. +.+...|..+..+|...|++++|...|++....
T Consensus        91 ~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l  126 (162)
T 3rkv_A           91 KRE-ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN  126 (162)
T ss_dssp             HHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             hcC-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence            542 334556666666666666666666666665554

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=98.28  E-value=1.6e-06  Score=58.90  Aligned_cols=84  Identities=17%  Similarity=0.091  Sum_probs=40.1

Q ss_pred             cCHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHhHHHH
Q 036275           53 IYFSDAHAVFEEMKRLG--ITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEE  130 (271)
Q Consensus        53 g~~~~A~~~~~~~~~~~--~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~  130 (271)
                      |++++|+..|++..+.+  -+.+...+..+..++...|++++|+..|++..+.... +...+..+..++...|++++|..
T Consensus         4 g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~   82 (117)
T 3k9i_A            4 GLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPN-HQALRVFYAMVLYNLGRYEQGVE   82 (117)
T ss_dssp             ---CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHH
T ss_pred             CcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHcCCHHHHHH
Confidence            44555555555554432  1223444555555555555555555555555544321 34444555555555555555555


Q ss_pred             HHHHHHh
Q 036275          131 VLTAMEK  137 (271)
Q Consensus       131 ~~~~m~~  137 (271)
                      .+++..+
T Consensus        83 ~~~~al~   89 (117)
T 3k9i_A           83 LLLKIIA   89 (117)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            5555444

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=98.27  E-value=5.4e-06  Score=70.73  Aligned_cols=97  Identities=14%  Similarity=0.081  Sum_probs=45.6

Q ss_pred             HHHHHHHHHHccCCHhHHHHHHHHHHhC-----C-CCC-ChhhHHHHHHHHHcCCCHHHHHHHHHhchh-----CCCC-C
Q 036275          111 VINSMLNLYGRLGQFEKMEEVLTAMEKG-----S-YAA-DISTYNILINIYGRGGFIEKMEGLFQSLPA-----KRLK-P  177 (271)
Q Consensus       111 ~~~~li~~~~~~g~~~~a~~~~~~m~~~-----~-~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-----~g~~-~  177 (271)
                      +++.|..+|...|++++|+.++++..+.     | -.| ...+++.|...|...|++++|+.++++...     .|.. |
T Consensus       353 ~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp  432 (490)
T 3n71_A          353 LLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHP  432 (490)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSH
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCCh
Confidence            3455555555555555555555443321     1 011 234455555555555555555555554432     1211 1


Q ss_pred             C-HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 036275          178 D-VVTWTSRLAAYSRKKLYRRCLEIFEEMID  207 (271)
Q Consensus       178 ~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~  207 (271)
                      + ..+...+-.++...+.+++|..++..+++
T Consensus       433 ~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~  463 (490)
T 3n71_A          433 ITKDLEAMRMQTEMELRMFRQNEFMYHKMRE  463 (490)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            1 12334444555555556666666655554

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=98.26  E-value=1.7e-05  Score=65.31  Aligned_cols=96  Identities=3%  Similarity=-0.113  Sum_probs=47.9

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHHCC--------------C-CCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCC
Q 036275           76 SHMLLLTAYSKTGNVAKCEGVINQMHKSG--------------L-KPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSY  140 (271)
Q Consensus        76 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~--------------~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~  140 (271)
                      .+..+...+.+.|++++|+..|++..+.-              . +.+...|..+..+|.+.|++++|++.+++..+.. 
T Consensus       225 ~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~-  303 (370)
T 1ihg_A          225 DLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEID-  303 (370)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhC-
Confidence            35555566666666666666666655410              0 1122344444555555555555555555554432 


Q ss_pred             CCChhhHHHHHHHHHcCCCHHHHHHHHHhchh
Q 036275          141 AADISTYNILINIYGRGGFIEKMEGLFQSLPA  172 (271)
Q Consensus       141 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  172 (271)
                      +.+...+..+..+|...|++++|.+.|++..+
T Consensus       304 p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~  335 (370)
T 1ihg_A          304 PSNTKALYRRAQGWQGLKEYDQALADLKKAQE  335 (370)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence            22344444455555555555555555554443

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=98.24  E-value=3.3e-06  Score=72.12  Aligned_cols=120  Identities=11%  Similarity=-0.023  Sum_probs=63.1

Q ss_pred             HHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHH
Q 036275           82 TAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIE  161 (271)
Q Consensus        82 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~  161 (271)
                      ..+.+.|++++|++.|++..+.. +-+...+..+..++.+.|++++|++.+++..+.. +.+..++..+..+|...|+++
T Consensus        14 ~~~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~~~   91 (477)
T 1wao_1           14 NDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKFR   91 (477)
T ss_dssp             SSTTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHTCHH
T ss_pred             HHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHH
Confidence            34455666666666666665543 2245556666666666666666666666666542 334556666666666666666


Q ss_pred             HHHHHHHhchhCCCCCCHHHHHHHHHH--HHhcCCHHHHHHHHHH
Q 036275          162 KMEGLFQSLPAKRLKPDVVTWTSRLAA--YSRKKLYRRCLEIFEE  204 (271)
Q Consensus       162 ~a~~~~~~m~~~g~~~~~~~~~~li~~--~~~~g~~~~a~~~~~~  204 (271)
                      +|.+.|++..+... -+...+..+..+  +.+.|++++|.+.+++
T Consensus        92 eA~~~~~~al~~~p-~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~  135 (477)
T 1wao_1           92 AALRDYETVVKVKP-HDKDAKMKYQECNKIVKQKAFERAIAGDEH  135 (477)
T ss_dssp             HHHHHHHHHHHHST-TCTTHHHHHHHHHHHHHHHHHCCC------
T ss_pred             HHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence            66666666554321 122233333333  5555666666655544

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=98.24  E-value=0.00055  Score=55.15  Aligned_cols=199  Identities=7%  Similarity=-0.003  Sum_probs=146.1

Q ss_pred             chHHHHHH-----hcCH-HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC----------hHHHHHHHHHHHHCCCCC
Q 036275           44 PNLFVFIF-----SIYF-SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGN----------VAKCEGVINQMHKSGLKP  107 (271)
Q Consensus        44 y~~ll~~~-----~g~~-~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~----------~~~a~~~~~~m~~~~~~~  107 (271)
                      |..+....     .|.+ ++|++.++.+...+ |-+..+|+.--..+...+.          +++++.+++.+.....+ 
T Consensus        29 y~~~~~~~~~~~~~~e~s~eaL~~t~~~L~~n-P~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PK-  106 (331)
T 3dss_A           29 YQSATQAVFQKRQAGELDESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-  106 (331)
T ss_dssp             HHHHHHHHHHHHHTTCCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-
T ss_pred             HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCC-
Confidence            55555554     5554 48999999999876 5567777765444444333          67889999999887543 


Q ss_pred             CHHHHHHHHHHHHccC--CHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCC-HHHHHHHHHhchhCCCCCCHHHHHH
Q 036275          108 DTFVINSMLNLYGRLG--QFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGF-IEKMEGLFQSLPAKRLKPDVVTWTS  184 (271)
Q Consensus       108 ~~~~~~~li~~~~~~g--~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~-~~~a~~~~~~m~~~g~~~~~~~~~~  184 (271)
                      +..+|+.-...+...+  .+++++++++.+.+.. +.+..+|+.-.-.+...|. ++++++.++.+.+... -|...|+.
T Consensus       107 ny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p-~N~SAW~~  184 (331)
T 3dss_A          107 SYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNF-SNYSSWHY  184 (331)
T ss_dssp             CHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCS-CCHHHHHH
T ss_pred             CHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCC-CCHHHHHH
Confidence            7778877777777777  4899999999999874 5678888888888888888 6899999999887643 36778887


Q ss_pred             HHHHHHhc--------------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc-----------CcHHHHHHHHHH
Q 036275          185 RLAAYSRK--------------KLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSE-----------DQIEQVTTLVRT  239 (271)
Q Consensus       185 li~~~~~~--------------g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~-----------g~~~~a~~~~~~  239 (271)
                      ....+...              +.++++.+.+....... +-|...|..+-..+.+.           +.++++.+.+++
T Consensus       185 R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~-P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~e  263 (331)
T 3dss_A          185 RSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKE  263 (331)
T ss_dssp             HHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHH
Confidence            77766654              45788999999888753 44677776554444444           467889999999


Q ss_pred             HHhcccch
Q 036275          240 MHKDMKTA  247 (271)
Q Consensus       240 ~~~~~~~~  247 (271)
                      +.+..+..
T Consensus       264 lle~~pd~  271 (331)
T 3dss_A          264 LQELEPEN  271 (331)
T ss_dssp             HHHHCTTC
T ss_pred             HHhhCccc
Confidence            88766543

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=98.23  E-value=2.9e-06  Score=57.56  Aligned_cols=83  Identities=11%  Similarity=-0.022  Sum_probs=34.0

Q ss_pred             CCHhHHHHHHHHHHhCC--CCCChhhHHHHHHHHHcCCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 036275          123 GQFEKMEEVLTAMEKGS--YAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLE  200 (271)
Q Consensus       123 g~~~~a~~~~~~m~~~~--~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~  200 (271)
                      |++++|+..|++..+.+  -+.+...+..+..+|...|++++|.+.|++..+.. +-+..++..+..++...|++++|..
T Consensus         4 g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~   82 (117)
T 3k9i_A            4 GLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF-PNHQALRVFYAMVLYNLGRYEQGVE   82 (117)
T ss_dssp             ---CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred             CcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHcCCHHHHHH
Confidence            34444444444444432  11123344444444444444444444444444331 1123344444444444444444444


Q ss_pred             HHHHHH
Q 036275          201 IFEEMI  206 (271)
Q Consensus       201 ~~~~m~  206 (271)
                      .+++..
T Consensus        83 ~~~~al   88 (117)
T 3k9i_A           83 LLLKII   88 (117)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            444443

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=98.23  E-value=2e-05  Score=64.88  Aligned_cols=124  Identities=8%  Similarity=-0.049  Sum_probs=90.6

Q ss_pred             HHHHHHHHHHHccCCHhHHHHHHHHHHhC---------------CCCCChhhHHHHHHHHHcCCCHHHHHHHHHhchhCC
Q 036275          110 FVINSMLNLYGRLGQFEKMEEVLTAMEKG---------------SYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKR  174 (271)
Q Consensus       110 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~---------------~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g  174 (271)
                      ..+..+...+.+.|++++|++.|++..+.               --+.+..+|..+..+|.+.|++++|.+.+++..+..
T Consensus       224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~  303 (370)
T 1ihg_A          224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEID  303 (370)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhC
Confidence            34777888899999999999999988761               012345677888888888888888888888887653


Q ss_pred             CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHH
Q 036275          175 LKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTT  235 (271)
Q Consensus       175 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~  235 (271)
                       +-+...|..+..+|...|++++|...|++..+.. +-+...+..+..++...++.+++.+
T Consensus       304 -p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~-P~~~~~~~~l~~~~~~~~~~~~a~k  362 (370)
T 1ihg_A          304 -PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELLKVKQKIKAQKDKEK  362 (370)
T ss_dssp             -TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             -chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHH
Confidence             2256778888888888888888888888877753 2355566666666666666555543

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=98.22  E-value=2.2e-05  Score=66.60  Aligned_cols=126  Identities=6%  Similarity=-0.022  Sum_probs=101.3

Q ss_pred             chHHHHHH--hcCHHHHHHHHHHHHHcCCCCC---------------HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCC
Q 036275           44 PNLFVFIF--SIYFSDAHAVFEEMKRLGITPT---------------MKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLK  106 (271)
Q Consensus        44 y~~ll~~~--~g~~~~A~~~~~~~~~~~~~~~---------------~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~  106 (271)
                      |..+-..+  .|++++|+..|++..+.. +.+               ...|..+..+|.+.|++++|+..+++..+.. +
T Consensus       271 ~~~~G~~~~~~g~~~~A~~~y~~Al~~~-p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p  348 (457)
T 1kt0_A          271 VKEKGTVYFKGGKYMQAVIQYGKIVSWL-EMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD-S  348 (457)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHH-TTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-T
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHHHh-cccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-C
Confidence            55555555  999999999999998864 223               6889999999999999999999999999875 3


Q ss_pred             CCHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHH-HHHhchh
Q 036275          107 PDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEG-LFQSLPA  172 (271)
Q Consensus       107 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~-~~~~m~~  172 (271)
                      .+...|..+..+|...|++++|+..|++..+.. +.+...+..+..++.+.++.+++.+ ++..|..
T Consensus       349 ~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~f~  414 (457)
T 1kt0_A          349 ANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN-PQNKAARLQISMCQKKAKEHNERDRRIYANMFK  414 (457)
T ss_dssp             TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred             ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            367889999999999999999999999999863 4467888999999999999887764 4555543

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=98.22  E-value=7e-05  Score=52.36  Aligned_cols=111  Identities=10%  Similarity=-0.109  Sum_probs=61.5

Q ss_pred             cCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc----cCCHhHH
Q 036275           53 IYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGR----LGQFEKM  128 (271)
Q Consensus        53 g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~----~g~~~~a  128 (271)
                      +++++|.+.|++..+.| .+...    +...|...+.+++|+++|++..+.|   +...+..|...|..    .++.++|
T Consensus         9 ~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A   80 (138)
T 1klx_A            9 KDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKA   80 (138)
T ss_dssp             HHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred             cCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHH
Confidence            45566666666666655 22322    4444555555666666666666553   44455555555555    5566666


Q ss_pred             HHHHHHHHhCCCCCChhhHHHHHHHHHc----CCCHHHHHHHHHhchhCC
Q 036275          129 EEVLTAMEKGSYAADISTYNILINIYGR----GGFIEKMEGLFQSLPAKR  174 (271)
Q Consensus       129 ~~~~~~m~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~g  174 (271)
                      .+.|++..+.|   +...+..|...|..    .++.++|.+.|++..+.|
T Consensus        81 ~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g  127 (138)
T 1klx_A           81 AQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG  127 (138)
T ss_dssp             HHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence            66666665554   34445555555555    555666666665555543

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=98.21  E-value=8e-06  Score=66.45  Aligned_cols=61  Identities=5%  Similarity=-0.046  Sum_probs=32.1

Q ss_pred             HHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHhchh
Q 036275          111 VINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPA  172 (271)
Q Consensus       111 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  172 (271)
                      .|..+..++.+.|++++|+..++...+.. +.+...|..+..+|...|++++|.+.|++..+
T Consensus       232 ~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~  292 (338)
T 2if4_A          232 CHLNIAACLIKLKRYDEAIGHCNIVLTEE-EKNPKALFRRGKAKAELGQMDSARDDFRKAQK  292 (338)
T ss_dssp             HHHHHHHHHHTTTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            44455555555555555555555555432 23445555555555555555555555555544

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=98.18  E-value=2.8e-05  Score=55.78  Aligned_cols=99  Identities=9%  Similarity=-0.009  Sum_probs=60.2

Q ss_pred             HHHHHHHHHHHHccCCHhHHHHHHHHHHhC-------C----------CCCChhhHHHHHHHHHcCCCHHHHHHHHHhch
Q 036275          109 TFVINSMLNLYGRLGQFEKMEEVLTAMEKG-------S----------YAADISTYNILINIYGRGGFIEKMEGLFQSLP  171 (271)
Q Consensus       109 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-------~----------~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~  171 (271)
                      ...+......+.+.|++++|+..|.+..+.       .          -+.+...|..+..+|.+.|++++|...+++..
T Consensus        11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al   90 (162)
T 3rkv_A           11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL   90 (162)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence            345666777777788888888877776653       0          01123455666666666666666666666655


Q ss_pred             hCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 036275          172 AKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDA  208 (271)
Q Consensus       172 ~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~  208 (271)
                      ... +.+...|..+..++...|++++|...|++..+.
T Consensus        91 ~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l  126 (162)
T 3rkv_A           91 KRE-ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN  126 (162)
T ss_dssp             HHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             hcC-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence            542 223556666666666666666666666665554

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=98.17  E-value=0.0004  Score=60.50  Aligned_cols=173  Identities=8%  Similarity=0.012  Sum_probs=125.0

Q ss_pred             hcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC----------hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 036275           52 SIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGN----------VAKCEGVINQMHKSGLKPDTFVINSMLNLYGR  121 (271)
Q Consensus        52 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~----------~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~  121 (271)
                      ....++|++.++++.+.+ |-+..+|+.--.++...|+          ++++++.++++.+...+ +..+|+.-..++.+
T Consensus        42 ~~~~eeal~~~~~~l~~n-P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK-~y~aW~hR~w~l~~  119 (567)
T 1dce_A           42 GELDESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCWLLSR  119 (567)
T ss_dssp             TCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHT
T ss_pred             CCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHH
Confidence            444567889999988876 5577788777777766666          88888888888887544 67778777777778


Q ss_pred             cC--CHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCC-CHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhc------
Q 036275          122 LG--QFEKMEEVLTAMEKGSYAADISTYNILINIYGRGG-FIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRK------  192 (271)
Q Consensus       122 ~g--~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g-~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~------  192 (271)
                      .+  +++++++.++.+.+.. +.+..+|+.-...+.+.| .++++.+.++++.+... -+..+|+.....+...      
T Consensus       120 l~~~~~~~el~~~~k~l~~d-~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p-~n~saW~~r~~ll~~l~~~~~~  197 (567)
T 1dce_A          120 LPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNF-SNYSSWHYRSCLLPQLHPQPDS  197 (567)
T ss_dssp             CSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTC-CCHHHHHHHHHHHHHHSCCCCS
T ss_pred             cccccHHHHHHHHHHHHhhc-cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCC-CCccHHHHHHHHHHhhcccccc
Confidence            88  6688999998888864 557778888877788888 78888888888877643 2667787777766653      


Q ss_pred             --------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCc
Q 036275          193 --------KLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQ  229 (271)
Q Consensus       193 --------g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~  229 (271)
                              +.++++.+.+++..... +-|...|...-..+.+.+.
T Consensus       198 ~~~~~~~~~~~~eel~~~~~ai~~~-P~~~saW~y~~~ll~~~~~  241 (567)
T 1dce_A          198 GPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGRAEP  241 (567)
T ss_dssp             SSCCSSCHHHHHHHHHHHHHHHHHC-SSCSHHHHHHHHHHSCCCC
T ss_pred             cccccccHHHHHHHHHHHHHHHhhC-CCCccHHHHHHHHHhcCCC
Confidence                    44677777777766543 3355666665555555544

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=98.16  E-value=0.0001  Score=51.56  Aligned_cols=110  Identities=10%  Similarity=-0.035  Sum_probs=65.8

Q ss_pred             ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHc----CCCHHHHH
Q 036275           89 NVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGR----GGFIEKME  164 (271)
Q Consensus        89 ~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~----~g~~~~a~  164 (271)
                      +.++|++.|++..+.| .|+..    |...|...+..++|.+.|++..+.|   +...+..|...|..    .+++++|.
T Consensus        10 d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~   81 (138)
T 1klx_A           10 DLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAA   81 (138)
T ss_dssp             HHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred             CHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHH
Confidence            4566666666666665 22332    4555555556666666666666654   45555666666665    56666666


Q ss_pred             HHHHhchhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCC
Q 036275          165 GLFQSLPAKRLKPDVVTWTSRLAAYSR----KKLYRRCLEIFEEMIDAG  209 (271)
Q Consensus       165 ~~~~~m~~~g~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~  209 (271)
                      +.|++..+.|   +...+..|-..|..    .++.++|...|++..+.|
T Consensus        82 ~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g  127 (138)
T 1klx_A           82 QYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG  127 (138)
T ss_dssp             HHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence            6666666554   45556666666665    566666666666666554

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=98.16  E-value=2e-05  Score=67.19  Aligned_cols=127  Identities=6%  Similarity=-0.049  Sum_probs=89.5

Q ss_pred             HHHccCCHhHHHHHHHHHHhC---CCC---C-ChhhHHHHHHHHHcCCCHHHHHHHHHhchh-----CCC-CCC-HHHHH
Q 036275          118 LYGRLGQFEKMEEVLTAMEKG---SYA---A-DISTYNILINIYGRGGFIEKMEGLFQSLPA-----KRL-KPD-VVTWT  183 (271)
Q Consensus       118 ~~~~~g~~~~a~~~~~~m~~~---~~~---~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-----~g~-~~~-~~~~~  183 (271)
                      .+...|++++|+.++++..+.   -+.   | ...+++.|..+|...|++++|+.++++...     .|. -|+ ..+++
T Consensus       318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~  397 (490)
T 3n71_A          318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM  397 (490)
T ss_dssp             HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred             HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence            345778888888888776542   111   2 356788899999999999999998887653     221 222 35788


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHH-----CCC-CCC-HHHHHHHHHHHhccCcHHHHHHHHHHHHhcc
Q 036275          184 SRLAAYSRKKLYRRCLEIFEEMID-----AGC-YPD-GGTAKVLISACSSEDQIEQVTTLVRTMHKDM  244 (271)
Q Consensus       184 ~li~~~~~~g~~~~a~~~~~~m~~-----~~~-~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~  244 (271)
                      .|...|...|++++|..++++.++     .|- .|+ ..+...+-.++...+.+++|+.++.++++..
T Consensus       398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~  465 (490)
T 3n71_A          398 RAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAA  465 (490)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            888999999999999888887542     231 122 3345566667778888999999999887643

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=98.13  E-value=9.7e-06  Score=65.97  Aligned_cols=97  Identities=8%  Similarity=-0.008  Sum_probs=53.4

Q ss_pred             hHHHHHHHHHcCCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHH-
Q 036275          146 TYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPD-GGTAKVLISA-  223 (271)
Q Consensus       146 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~l~~~-  223 (271)
                      .|..+..+|.+.|++++|...+++..+.. +-+...|..+..+|...|++++|...|++..+.  .|+ ...+..+... 
T Consensus       232 ~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l--~p~~~~a~~~L~~l~  308 (338)
T 2if4_A          232 CHLNIAACLIKLKRYDEAIGHCNIVLTEE-EKNPKALFRRGKAKAELGQMDSARDDFRKAQKY--APDDKAIRRELRALA  308 (338)
T ss_dssp             HHHHHHHHHHTTTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC------------------
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHH
Confidence            78889999999999999999999988753 236788999999999999999999999998764  343 3444444444 


Q ss_pred             HhccCcHHHHHHHHHHHHhccc
Q 036275          224 CSSEDQIEQVTTLVRTMHKDMK  245 (271)
Q Consensus       224 ~~~~g~~~~a~~~~~~~~~~~~  245 (271)
                      ....+..+++..+|+++....+
T Consensus       309 ~~~~~~~~~a~~~~~~~l~~~p  330 (338)
T 2if4_A          309 EQEKALYQKQKEMYKGIFKGKD  330 (338)
T ss_dssp             ----------------------
T ss_pred             HHHHHHHHHHHHHHHHhhCCCC
Confidence            2345667788888888866544

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=98.08  E-value=6.4e-06  Score=54.76  Aligned_cols=95  Identities=9%  Similarity=-0.014  Sum_probs=57.2

Q ss_pred             CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCC-------hh
Q 036275           73 TMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAAD-------IS  145 (271)
Q Consensus        73 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~-------~~  145 (271)
                      +...+..+...+...|++++|+..|++..+.. +.+...+..+..++...|++++|++.+++..+.  .|+       ..
T Consensus         3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~   79 (111)
T 2l6j_A            3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRY--TSTAEHVAIRSK   79 (111)
T ss_dssp             HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--CSSTTSHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCccHHHHHHH
Confidence            34556666667777777777777777666653 225566666677777777777777777776664  233       34


Q ss_pred             hHHHHHHHHHcCCCHHHHHHHHHhc
Q 036275          146 TYNILINIYGRGGFIEKMEGLFQSL  170 (271)
Q Consensus       146 ~~~~li~~~~~~g~~~~a~~~~~~m  170 (271)
                      .+..+..++...|+.+.|.+.++++
T Consensus        80 ~~~~~~~~~~~~~~~~~a~~~~~~~  104 (111)
T 2l6j_A           80 LQYRLELAQGAVGSVQIPVVEVDEL  104 (111)
T ss_dssp             HHHHHHHHHHHHHCCCCCSSSSSSC
T ss_pred             HHHHHHHHHHHHHhHhhhHhHHHHh
Confidence            4445555555555555554444433

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=98.07  E-value=6.4e-05  Score=53.63  Aligned_cols=97  Identities=8%  Similarity=-0.018  Sum_probs=50.5

Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCC-C-----CH-----HHHHHHHHHHHccCCHhHHHHHHHHHHhC-----
Q 036275           75 KSHMLLLTAYSKTGNVAKCEGVINQMHKSGLK-P-----DT-----FVINSMLNLYGRLGQFEKMEEVLTAMEKG-----  138 (271)
Q Consensus        75 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~-~-----~~-----~~~~~li~~~~~~g~~~~a~~~~~~m~~~-----  138 (271)
                      ..+......+.+.|++++|+..|++..+.... |     +.     ..|..+..++.+.|++++|+..+++..+.     
T Consensus        12 ~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~   91 (159)
T 2hr2_A           12 YLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRG   91 (159)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccc
Confidence            34445556666667777777777766654211 0     11     25555555556666666666555555442     


Q ss_pred             CCCC-ChhhH----HHHHHHHHcCCCHHHHHHHHHhch
Q 036275          139 SYAA-DISTY----NILINIYGRGGFIEKMEGLFQSLP  171 (271)
Q Consensus       139 ~~~~-~~~~~----~~li~~~~~~g~~~~a~~~~~~m~  171 (271)
                      .+.| +...|    .....++...|++++|+..|++..
T Consensus        92 e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAl  129 (159)
T 2hr2_A           92 ELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVV  129 (159)
T ss_dssp             CTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             cCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHH
Confidence            0022 23344    445555555555555555555443

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=98.07  E-value=0.0018  Score=52.20  Aligned_cols=187  Identities=10%  Similarity=0.003  Sum_probs=139.1

Q ss_pred             HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC--ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCC-HhHHHHH
Q 036275           55 FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTG--NVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQ-FEKMEEV  131 (271)
Q Consensus        55 ~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~--~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~-~~~a~~~  131 (271)
                      +++++.+++.+...+ |-+..+|+.-.-.+...+  .+++++.+++++.+.... |...|+.-.-.....|. ++++++.
T Consensus        90 l~~EL~~~~~~L~~~-PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dpr-Ny~AW~~R~~vl~~l~~~~~eel~~  167 (331)
T 3dss_A           90 VKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAF  167 (331)
T ss_dssp             HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred             HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhCcCHHHHHHH
Confidence            688999999998876 668999998888888887  489999999999988644 78888887777778888 5899999


Q ss_pred             HHHHHhCCCCCChhhHHHHHHHHHcC--------------CCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhc-----
Q 036275          132 LTAMEKGSYAADISTYNILINIYGRG--------------GFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRK-----  192 (271)
Q Consensus       132 ~~~m~~~~~~~~~~~~~~li~~~~~~--------------g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~-----  192 (271)
                      ++.+.+.. +-|...|+.....+.+.              +.++++++.+....... +-|...|+.+-..+.+.     
T Consensus       168 ~~~~I~~~-p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~-P~d~SaW~Y~r~ll~~~~~~~~  245 (331)
T 3dss_A          168 TDSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGAGSGRCE  245 (331)
T ss_dssp             HHHHHHHC-SCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHSSSCGGG
T ss_pred             HHHHHHHC-CCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccCccc
Confidence            99999874 56778887776666554              45788999999887653 33677777555554444     


Q ss_pred             ------CCHHHHHHHHHHHHHCCCCCCHHHHHH-----HHHHHhccCcHHHHHHHHHHHHhcccchh
Q 036275          193 ------KLYRRCLEIFEEMIDAGCYPDGGTAKV-----LISACSSEDQIEQVTTLVRTMHKDMKTAL  248 (271)
Q Consensus       193 ------g~~~~a~~~~~~m~~~~~~p~~~~~~~-----l~~~~~~~g~~~~a~~~~~~~~~~~~~~~  248 (271)
                            +.++++.+.++++.+.  .||. .|..     +.......+..+++..++.++.+-++.-.
T Consensus       246 ~~~~~~~~l~~el~~~~elle~--~pd~-~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r~  309 (331)
T 3dss_A          246 LSVEKSTVLQSELESCKELQEL--EPEN-KWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRA  309 (331)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHH--CTTC-HHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGGGH
T ss_pred             cchHHHHHHHHHHHHHHHHHhh--Cccc-chHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcchh
Confidence                  4578899999999875  4554 2322     22222346778889999999887665443

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=97.96  E-value=0.00098  Score=58.04  Aligned_cols=172  Identities=9%  Similarity=-0.030  Sum_probs=131.5

Q ss_pred             CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCC----------HhHHHHHHHHHHhCCCCCChhhHHHHHHHHHcC
Q 036275           88 GNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQ----------FEKMEEVLTAMEKGSYAADISTYNILINIYGRG  157 (271)
Q Consensus        88 ~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~----------~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~  157 (271)
                      ..-++|++.++++...... +...|+.--.++...|+          ++++++.++.+.+.. +-+..+|+.-..++.+.
T Consensus        43 ~~~eeal~~~~~~l~~nP~-~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l  120 (567)
T 1dce_A           43 ELDESVLELTSQILGANPD-FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRL  120 (567)
T ss_dssp             CCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTC
T ss_pred             CCCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHc
Confidence            4457889999999987533 45567766666666666          899999999999874 56788999999999999


Q ss_pred             C--CHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc-------
Q 036275          158 G--FIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKK-LYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSE-------  227 (271)
Q Consensus       158 g--~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g-~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~-------  227 (271)
                      |  +++++.+.++++.+... -+..+|+.-.......| .++++.+.++++.+.. +-|...|......+.+.       
T Consensus       121 ~~~~~~~el~~~~k~l~~d~-~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~-p~n~saW~~r~~ll~~l~~~~~~~  198 (567)
T 1dce_A          121 PEPNWARELELCARFLEADE-RNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQPDSG  198 (567)
T ss_dssp             SSCCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT-CCCHHHHHHHHHHHHHHSCCCCSS
T ss_pred             ccccHHHHHHHHHHHHhhcc-ccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHC-CCCccHHHHHHHHHHhhccccccc
Confidence            9  77999999999998753 37888988888888888 8999999999998875 44777887766665542       


Q ss_pred             -------CcHHHHHHHHHHHHhcccch---hHHHHHHHhhcccccc
Q 036275          228 -------DQIEQVTTLVRTMHKDMKTA---LPIYFNLYGEKGVARS  263 (271)
Q Consensus       228 -------g~~~~a~~~~~~~~~~~~~~---~~~~~~~~~~~G~~~~  263 (271)
                             +.++++.+.+++..+..+..   +.-+-.++.+.|...+
T Consensus       199 ~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~  244 (567)
T 1dce_A          199 PQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDV  244 (567)
T ss_dssp             SCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSC
T ss_pred             ccccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccc
Confidence                   56889999999887765544   3334445666666444

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=97.91  E-value=0.0001  Score=48.67  Aligned_cols=65  Identities=9%  Similarity=0.139  Sum_probs=39.7

Q ss_pred             ChhhHHHHHHHHHcCCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 036275          143 DISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDA  208 (271)
Q Consensus       143 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~  208 (271)
                      +...+..+...+...|++++|.+.|++..... +.+...+..+..++...|++++|...+++..+.
T Consensus         3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~   67 (111)
T 2l6j_A            3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRY   67 (111)
T ss_dssp             HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence            34555666666666666666666666665542 224556666666666666666666666666554

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=97.86  E-value=9.3e-05  Score=49.61  Aligned_cols=61  Identities=13%  Similarity=0.016  Sum_probs=26.6

Q ss_pred             HHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHhc
Q 036275          109 TFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSL  170 (271)
Q Consensus       109 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m  170 (271)
                      ...+..+...+...|++++|+..+++..+.. +.+...|..+..+|...|++++|...|++.
T Consensus        19 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~a   79 (115)
T 2kat_A           19 MLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWESG   79 (115)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            3344444444444444444444444444331 223334444444444444444444444443

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=97.86  E-value=0.00018  Score=45.62  Aligned_cols=63  Identities=14%  Similarity=0.119  Sum_probs=31.5

Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhC
Q 036275           75 KSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKG  138 (271)
Q Consensus        75 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~  138 (271)
                      ..+..+...+...|++++|+..+++..+.. +.+...+..+..++...|++++|.+.+++..+.
T Consensus        10 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~   72 (91)
T 1na3_A           10 EAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL   72 (91)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence            344445555555555555555555554432 123444445555555555555555555555443

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=97.85  E-value=9e-05  Score=52.77  Aligned_cols=93  Identities=9%  Similarity=0.034  Sum_probs=61.3

Q ss_pred             hcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChH----------HHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 036275           52 SIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVA----------KCEGVINQMHKSGLKPDTFVINSMLNLYGR  121 (271)
Q Consensus        52 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~----------~a~~~~~~m~~~~~~~~~~~~~~li~~~~~  121 (271)
                      .+.+++|.+.++...+.+ |.+...|..+..++.+.++++          +|+..|++.++.... +...|..+..+|..
T Consensus        15 ~~~feeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~-~~~A~~~LG~ay~~   92 (158)
T 1zu2_A           15 ILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPK-KDEAVWCIGNAYTS   92 (158)
T ss_dssp             HHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHH
T ss_pred             HhHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHH
Confidence            456788888888888876 668888888888888877654          666666666665322 44566666666665


Q ss_pred             cC-----------CHhHHHHHHHHHHhCCCCCChhhHH
Q 036275          122 LG-----------QFEKMEEVLTAMEKGSYAADISTYN  148 (271)
Q Consensus       122 ~g-----------~~~~a~~~~~~m~~~~~~~~~~~~~  148 (271)
                      .|           ++++|++.|++..+.  .|+...|.
T Consensus        93 lg~l~P~~~~a~g~~~eA~~~~~kAl~l--~P~~~~y~  128 (158)
T 1zu2_A           93 FAFLTPDETEAKHNFDLATQFFQQAVDE--QPDNTHYL  128 (158)
T ss_dssp             HHHHCCCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHH
T ss_pred             hcccCcchhhhhccHHHHHHHHHHHHHh--CCCCHHHH
Confidence            53           566666666665553  34444333

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=97.85  E-value=0.00026  Score=50.46  Aligned_cols=96  Identities=11%  Similarity=0.001  Sum_probs=70.2

Q ss_pred             HHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCC--------h-----hhHHHHHHHHHcCCCHHHHHHHHHhchhC---
Q 036275          110 FVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAAD--------I-----STYNILINIYGRGGFIEKMEGLFQSLPAK---  173 (271)
Q Consensus       110 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~--------~-----~~~~~li~~~~~~g~~~~a~~~~~~m~~~---  173 (271)
                      ..+......+.+.|++++|++.|++..+..  |+        .     ..|..+..++.+.|++++|+..+++..+.   
T Consensus        12 ~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~--p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~   89 (159)
T 2hr2_A           12 YLALSDAQRQLVAGEYDEAAANCRRAMEIS--HTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNR   89 (159)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHH--TTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhc
Confidence            345667777888999999999999888752  32        2     27788888888888888888888877653   


Q ss_pred             --CCCCC-HHHH----HHHHHHHHhcCCHHHHHHHHHHHHH
Q 036275          174 --RLKPD-VVTW----TSRLAAYSRKKLYRRCLEIFEEMID  207 (271)
Q Consensus       174 --g~~~~-~~~~----~~li~~~~~~g~~~~a~~~~~~m~~  207 (271)
                        .+.|+ ...|    .....++...|++++|...|++..+
T Consensus        90 ~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle  130 (159)
T 2hr2_A           90 RGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE  130 (159)
T ss_dssp             HCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             cccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence              12454 3466    7777777888888888888877654

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=97.84  E-value=0.00027  Score=47.28  Aligned_cols=80  Identities=10%  Similarity=0.006  Sum_probs=68.4

Q ss_pred             HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHH
Q 036275           57 DAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAME  136 (271)
Q Consensus        57 ~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~  136 (271)
                      .|++.|++..+.. +.+...+..+...+...|++++|+..|++..+.. +.+...|..+..++...|++++|...|++..
T Consensus         3 ~a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al   80 (115)
T 2kat_A            3 AITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWESGL   80 (115)
T ss_dssp             CHHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            4677888887765 5688899999999999999999999999998875 3357788899999999999999999999887


Q ss_pred             hC
Q 036275          137 KG  138 (271)
Q Consensus       137 ~~  138 (271)
                      +.
T Consensus        81 ~~   82 (115)
T 2kat_A           81 AA   82 (115)
T ss_dssp             HH
T ss_pred             Hh
Confidence            64

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=97.77  E-value=0.0019  Score=55.21  Aligned_cols=196  Identities=10%  Similarity=-0.058  Sum_probs=112.8

Q ss_pred             HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHH
Q 036275           55 FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTA  134 (271)
Q Consensus        55 ~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~  134 (271)
                      .+.+..+|+++.... +.+...|...+..+.+.|+.+.|..+|++....  +.+...+..    |+...+.++.   ++.
T Consensus       195 ~~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~~----y~~~~e~~~~---~~~  264 (493)
T 2uy1_A          195 ESRMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSLY----YGLVMDEEAV---YGD  264 (493)
T ss_dssp             HHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHHH----HHHHTTCTHH---HHH
T ss_pred             HHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHHH----HHhhcchhHH---HHH
Confidence            345677888877654 667888888888888899999999999988877  334333322    2222111222   222


Q ss_pred             HHhCC---------C---CCChhhHHHHHHHHHcCCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHh-cCCHHHHHHH
Q 036275          135 MEKGS---------Y---AADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSR-KKLYRRCLEI  201 (271)
Q Consensus       135 m~~~~---------~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~-~g~~~~a~~~  201 (271)
                      +.+.-         .   ......|...+....+.+..+.|..+|++. ... ..+...|-.....-.. .++.+.|..+
T Consensus       265 l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~-~~~~~v~i~~A~lE~~~~~d~~~ar~i  342 (493)
T 2uy1_A          265 LKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNE-GVGPHVFIYCAFIEYYATGSRATPYNI  342 (493)
T ss_dssp             HHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTS-CCCHHHHHHHHHHHHHHHCCSHHHHHH
T ss_pred             HHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCC-CCChHHHHHHHHHHHHHCCChHHHHHH
Confidence            22210         0   011345666677776777888888888888 321 1234444322222112 2368888888


Q ss_pred             HHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhcccchhHHHHHHHhhccccccc
Q 036275          202 FEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKDMKTALPIYFNLYGEKGVARSN  264 (271)
Q Consensus       202 ~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~a  264 (271)
                      |+...+.- +-+...+...++...+.|+.+.|..+|+++.+ ....+..+++.=...|+.+.+
T Consensus       343 fe~al~~~-~~~~~~~~~yid~e~~~~~~~~aR~l~er~~k-~~~lw~~~~~fE~~~G~~~~~  403 (493)
T 2uy1_A          343 FSSGLLKH-PDSTLLKEEFFLFLLRIGDEENARALFKRLEK-TSRMWDSMIEYEFMVGSMELF  403 (493)
T ss_dssp             HHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHSCC-BHHHHHHHHHHHHHHSCHHHH
T ss_pred             HHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-HHHHHHHHHHHHHHCCCHHHH
Confidence            88877642 22234445556666777888888888888732 223333333333344544433

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=97.74  E-value=0.00042  Score=43.80  Aligned_cols=63  Identities=14%  Similarity=0.120  Sum_probs=36.3

Q ss_pred             HHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHhchhC
Q 036275          110 FVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAK  173 (271)
Q Consensus       110 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~  173 (271)
                      ..+..+...+...|++++|...+++..+.. +.+...+..+..++.+.|++++|.+.+++....
T Consensus        10 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~   72 (91)
T 1na3_A           10 EAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL   72 (91)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence            345555556666666666666666655542 334555555666666666666666666655543

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=97.61  E-value=0.0034  Score=51.02  Aligned_cols=169  Identities=8%  Similarity=0.002  Sum_probs=106.3

Q ss_pred             chHHHHHHhcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh--c---CChHHHHHHHHHHHHCCCCCC-HHHHHHHHH
Q 036275           44 PNLFVFIFSIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSK--T---GNVAKCEGVINQMHKSGLKPD-TFVINSMLN  117 (271)
Q Consensus        44 y~~ll~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~--~---~~~~~a~~~~~~m~~~~~~~~-~~~~~~li~  117 (271)
                      -..++.+....+..++.  +... .+.+.+...|...+.+...  .   ....+|..+|++..+.  .|+ ...|..+.-
T Consensus       167 ~~~I~~aL~~~l~~~e~--~r~~-~~~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~l--DP~~a~A~A~la~  241 (372)
T 3ly7_A          167 LESLSKALNQPWPQRMQ--ETLQ-KILPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQS--SPEFTYARAEKAL  241 (372)
T ss_dssp             HHHHHHHTTCCCCHHHH--HHHH-HHSCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred             HHHHHHHhCchhhHHHH--HHHh-ccCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh--CCCCHHHHHHHHH
Confidence            44566666333333221  1122 2236678888887766543  2   2357889999998887  454 233433333


Q ss_pred             HHHc---cC--CHhHHH---HHHHHHHh-CCCCCChhhHHHHHHHHHcCCCHHHHHHHHHhchhCCCCCCHHHHHHHHHH
Q 036275          118 LYGR---LG--QFEKME---EVLTAMEK-GSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAA  188 (271)
Q Consensus       118 ~~~~---~g--~~~~a~---~~~~~m~~-~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~  188 (271)
                      +|..   .+  ......   ..++.... ..-+.+..+|..+...+...|++++|...++++...+  |+...|..+...
T Consensus       242 a~~~~~~~~~~~~~~~~~l~~a~~a~~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~  319 (372)
T 3ly7_A          242 VDIVRHSQHPLDEKQLAALNTEIDNIVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKV  319 (372)
T ss_dssp             HHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHH
T ss_pred             HHHHHhccCCCchhhHHHHHHHHHHHHhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHH
Confidence            3321   11  111111   12222111 1125678888888887888899999999999999874  788788888888


Q ss_pred             HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 036275          189 YSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLI  221 (271)
Q Consensus       189 ~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~  221 (271)
                      +.-.|++++|.+.+++....  .|...||...-
T Consensus       320 ~~~~G~~~eA~e~~~~AlrL--~P~~~t~~~~~  350 (372)
T 3ly7_A          320 YEMKGMNREAADAYLTAFNL--RPGANTLYWIE  350 (372)
T ss_dssp             HHHTTCHHHHHHHHHHHHHH--SCSHHHHHHHH
T ss_pred             HHHCCCHHHHHHHHHHHHhc--CCCcChHHHHh
Confidence            99999999999999988775  57887766443

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=97.59  E-value=0.00011  Score=52.23  Aligned_cols=86  Identities=12%  Similarity=-0.027  Sum_probs=50.2

Q ss_pred             hcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCH----------hHHHHHHHHHHhCCCCCChhhHHHHHHHHH
Q 036275           86 KTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQF----------EKMEEVLTAMEKGSYAADISTYNILINIYG  155 (271)
Q Consensus        86 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~----------~~a~~~~~~m~~~~~~~~~~~~~~li~~~~  155 (271)
                      +.+.+++|.+.+++..+.. +-+...|..+..++...+++          ++|+..|++..+.. +.+..+|..+..+|.
T Consensus        14 r~~~feeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ld-P~~~~A~~~LG~ay~   91 (158)
T 1zu2_A           14 RILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID-PKKDEAVWCIGNAYT   91 (158)
T ss_dssp             HHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred             HHhHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHH
Confidence            3445667777777766654 23566666666666666554          36666666666642 334556666666666


Q ss_pred             cCC-----------CHHHHHHHHHhchhC
Q 036275          156 RGG-----------FIEKMEGLFQSLPAK  173 (271)
Q Consensus       156 ~~g-----------~~~~a~~~~~~m~~~  173 (271)
                      ..|           ++++|.+.|++..+.
T Consensus        92 ~lg~l~P~~~~a~g~~~eA~~~~~kAl~l  120 (158)
T 1zu2_A           92 SFAFLTPDETEAKHNFDLATQFFQQAVDE  120 (158)
T ss_dssp             HHHHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HhcccCcchhhhhccHHHHHHHHHHHHHh
Confidence            553           455555555555443

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=97.52  E-value=0.0007  Score=44.11  Aligned_cols=62  Identities=10%  Similarity=0.067  Sum_probs=29.6

Q ss_pred             HHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHhch
Q 036275          109 TFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLP  171 (271)
Q Consensus       109 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~  171 (271)
                      ...+..+...+...|++++|++.|++..+.. +.+...|..+..+|...|++++|.+.|++..
T Consensus         7 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al   68 (100)
T 3ma5_A            7 PFTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQGI   68 (100)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            3344444445555555555555555444432 2234444455555555555555555555443

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=97.52  E-value=0.00056  Score=44.61  Aligned_cols=63  Identities=11%  Similarity=0.078  Sum_probs=28.4

Q ss_pred             CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHH
Q 036275           73 TMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAME  136 (271)
Q Consensus        73 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~  136 (271)
                      +...+..+...+.+.|++++|+..|++..+.... +...|..+..+|...|++++|.+.+++..
T Consensus         6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al   68 (100)
T 3ma5_A            6 DPFTRYALAQEHLKHDNASRALALFEELVETDPD-YVGTYYHLGKLYERLDRTDDAIDTYAQGI   68 (100)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            3444444444444444444444444444443211 23344444444444444444444444433

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=97.50  E-value=0.013  Score=50.15  Aligned_cols=182  Identities=11%  Similarity=-0.004  Sum_probs=117.9

Q ss_pred             chHHHHHH--hcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCC---------C---CCCH
Q 036275           44 PNLFVFIF--SIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSG---------L---KPDT  109 (271)
Q Consensus        44 y~~ll~~~--~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~---------~---~~~~  109 (271)
                      |-..+..+  .|+++.|.++|.+....  |.+...|..    |....+.++.   ++.+.+.-         .   ....
T Consensus       216 W~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~~----y~~~~e~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~  286 (493)
T 2uy1_A          216 YFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSLY----YGLVMDEEAV---YGDLKRKYSMGEAESAEKVFSKELD  286 (493)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHHH----HHHHTTCTHH---HHHHHHHTC----------CHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHHH----HHhhcchhHH---HHHHHHHHHhhccchhhhhcccccH
Confidence            33334434  89999999999999987  445444332    2222122222   33332210         0   1112


Q ss_pred             HHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHc-CCCHHHHHHHHHhchhCCCCCCHHHHHHHHHH
Q 036275          110 FVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGR-GGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAA  188 (271)
Q Consensus       110 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~-~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~  188 (271)
                      ..|...++...+.++.+.|..+|+.. +.. ..+...|......-.. .++.+.|..+|+...+.- .-++..+...+.-
T Consensus       287 ~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~-~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~-~~~~~~~~~yid~  363 (493)
T 2uy1_A          287 LLRINHLNYVLKKRGLELFRKLFIEL-GNE-GVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKH-PDSTLLKEEFFLF  363 (493)
T ss_dssp             HHHHHHHHHHHHHHCHHHHHHHHHHH-TTS-CCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHh-hCC-CCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-CCCHHHHHHHHHH
Confidence            45677777777788899999999999 321 1233444322222222 236999999999987652 2235556667777


Q ss_pred             HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHh
Q 036275          189 YSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHK  242 (271)
Q Consensus       189 ~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~  242 (271)
                      ....|+.+.|..+|+...     .....|...+..-...|+.+.+..++++..+
T Consensus       364 e~~~~~~~~aR~l~er~~-----k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~  412 (493)
T 2uy1_A          364 LLRIGDEENARALFKRLE-----KTSRMWDSMIEYEFMVGSMELFRELVDQKMD  412 (493)
T ss_dssp             HHHHTCHHHHHHHHHHSC-----CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            788999999999999962     2567788888877788999999998888764

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=97.50  E-value=0.00042  Score=58.13  Aligned_cols=84  Identities=8%  Similarity=-0.010  Sum_probs=43.2

Q ss_pred             CChHHHHHHHHHHHHC---CCC---CC-HHHHHHHHHHHHccCCHhHHHHHHHHHHhC-----C-CCCC-hhhHHHHHHH
Q 036275           88 GNVAKCEGVINQMHKS---GLK---PD-TFVINSMLNLYGRLGQFEKMEEVLTAMEKG-----S-YAAD-ISTYNILINI  153 (271)
Q Consensus        88 ~~~~~a~~~~~~m~~~---~~~---~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-----~-~~~~-~~~~~~li~~  153 (271)
                      |++++|+.++++..+.   -+.   |+ ..+++.|..+|...|++++|+.++++..+.     | -.|+ ..+++.|...
T Consensus       312 g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~  391 (433)
T 3qww_A          312 KSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRL  391 (433)
T ss_dssp             SCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHH
Confidence            4555555555554331   111   11 234556666666666666666666554421     1 1122 3456666666


Q ss_pred             HHcCCCHHHHHHHHHhch
Q 036275          154 YGRGGFIEKMEGLFQSLP  171 (271)
Q Consensus       154 ~~~~g~~~~a~~~~~~m~  171 (271)
                      |...|++++|+.++++..
T Consensus       392 ~~~qg~~~eA~~~~~~Al  409 (433)
T 3qww_A          392 YMGLENKAAGEKALKKAI  409 (433)
T ss_dssp             HHHTTCHHHHHHHHHHHH
T ss_pred             HHhccCHHHHHHHHHHHH
Confidence            666666666666666544

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=97.30  E-value=0.0014  Score=54.98  Aligned_cols=90  Identities=9%  Similarity=-0.061  Sum_probs=46.3

Q ss_pred             HHHHhcCChHHHHHHHHHHHHCC---CCC----CHHHHHHHHHHHHccCCHhHHHHHHHHHHhC-----C-CCCC-hhhH
Q 036275           82 TAYSKTGNVAKCEGVINQMHKSG---LKP----DTFVINSMLNLYGRLGQFEKMEEVLTAMEKG-----S-YAAD-ISTY  147 (271)
Q Consensus        82 ~~~~~~~~~~~a~~~~~~m~~~~---~~~----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-----~-~~~~-~~~~  147 (271)
                      ..+.+.|++++|+.++++..+..   +.|    ...+++.|..+|...|++++|+.++++..+.     | ..|+ ..++
T Consensus       295 e~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l  374 (429)
T 3qwp_A          295 EELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQV  374 (429)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHH
T ss_pred             HHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHH
Confidence            33445556666666666555431   111    1234555666666666666666666554421     1 1122 3455


Q ss_pred             HHHHHHHHcCCCHHHHHHHHHhch
Q 036275          148 NILINIYGRGGFIEKMEGLFQSLP  171 (271)
Q Consensus       148 ~~li~~~~~~g~~~~a~~~~~~m~  171 (271)
                      +.|...|...|++++|+.++++..
T Consensus       375 ~nLa~~~~~~g~~~eA~~~~~~Al  398 (429)
T 3qwp_A          375 MKVGKLQLHQGMFPQAMKNLRLAF  398 (429)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCCHHHHHHHHHHHH
Confidence            566666666666666666655543

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=97.29  E-value=0.00064  Score=57.04  Aligned_cols=85  Identities=7%  Similarity=-0.058  Sum_probs=64.1

Q ss_pred             CCHhHHHHHHHHHHhC---CCC---C-ChhhHHHHHHHHHcCCCHHHHHHHHHhchh-----CC-CCCC-HHHHHHHHHH
Q 036275          123 GQFEKMEEVLTAMEKG---SYA---A-DISTYNILINIYGRGGFIEKMEGLFQSLPA-----KR-LKPD-VVTWTSRLAA  188 (271)
Q Consensus       123 g~~~~a~~~~~~m~~~---~~~---~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-----~g-~~~~-~~~~~~li~~  188 (271)
                      |++++|+.++++..+.   -+.   | ...+++.|..+|...|++++|+.++++...     .| --|+ ..+++.|...
T Consensus       312 g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~  391 (433)
T 3qww_A          312 KSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRL  391 (433)
T ss_dssp             SCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHH
Confidence            6788888888776542   122   2 247889999999999999999999998653     23 1233 3578999999


Q ss_pred             HHhcCCHHHHHHHHHHHHH
Q 036275          189 YSRKKLYRRCLEIFEEMID  207 (271)
Q Consensus       189 ~~~~g~~~~a~~~~~~m~~  207 (271)
                      |...|++++|..++++..+
T Consensus       392 ~~~qg~~~eA~~~~~~Al~  410 (433)
T 3qww_A          392 YMGLENKAAGEKALKKAIA  410 (433)
T ss_dssp             HHHTTCHHHHHHHHHHHHH
T ss_pred             HHhccCHHHHHHHHHHHHH
Confidence            9999999999999887653

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=97.20  E-value=0.0055  Score=55.39  Aligned_cols=150  Identities=11%  Similarity=0.011  Sum_probs=97.8

Q ss_pred             hcCHHHHHH-HHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHhHHHH
Q 036275           52 SIYFSDAHA-VFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEE  130 (271)
Q Consensus        52 ~g~~~~A~~-~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~  130 (271)
                      .+++++|.+ ++..     + ++......++..+.+.|..+.|+++.+         +..+   -.......|++++|.+
T Consensus       612 ~~~~~~a~~~~l~~-----i-~~~~~~~~~~~~l~~~~~~~~a~~~~~---------~~~~---~f~~~l~~~~~~~A~~  673 (814)
T 3mkq_A          612 RGEIEEAIENVLPN-----V-EGKDSLTKIARFLEGQEYYEEALNISP---------DQDQ---KFELALKVGQLTLARD  673 (814)
T ss_dssp             TTCHHHHHHHTGGG-----C-CCHHHHHHHHHHHHHTTCHHHHHHHCC---------CHHH---HHHHHHHHTCHHHHHH
T ss_pred             hCCHHHHHHHHHhc-----C-CchHHHHHHHHHHHhCCChHHheecCC---------Ccch---heehhhhcCCHHHHHH
Confidence            888888877 5522     1 112233778888888999999887663         2211   1344567899999988


Q ss_pred             HHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 036275          131 VLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGC  210 (271)
Q Consensus       131 ~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~  210 (271)
                      +.+.+      .+...|..+...+.+.|+++.|++.|.++..         |..+...+...|+.+...++.+.....|-
T Consensus       674 ~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~~~~  738 (814)
T 3mkq_A          674 LLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAETTGK  738 (814)
T ss_dssp             HHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred             HHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHHHcCc
Confidence            85433      4678899999999999999999999998753         44555555556666666665555554431


Q ss_pred             CCCHHHHHHHHHHHhccCcHHHHHHHHHHH
Q 036275          211 YPDGGTAKVLISACSSEDQIEQVTTLVRTM  240 (271)
Q Consensus       211 ~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~  240 (271)
                            +.....++.+.|++++|.+++.++
T Consensus       739 ------~~~A~~~~~~~g~~~~a~~~~~~~  762 (814)
T 3mkq_A          739 ------FNLAFNAYWIAGDIQGAKDLLIKS  762 (814)
T ss_dssp             ------HHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred             ------hHHHHHHHHHcCCHHHHHHHHHHc
Confidence                  122233344456666666665554

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=97.20  E-value=0.0084  Score=54.15  Aligned_cols=101  Identities=9%  Similarity=0.134  Sum_probs=74.2

Q ss_pred             HHHHhcCChHHHHH-HHHHHHHCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCH
Q 036275           82 TAYSKTGNVAKCEG-VINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFI  160 (271)
Q Consensus        82 ~~~~~~~~~~~a~~-~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~  160 (271)
                      ......+++++|.+ ++..      .++......++..+.+.|..++|.++.+..            ..-.......|++
T Consensus       607 ~~~~~~~~~~~a~~~~l~~------i~~~~~~~~~~~~l~~~~~~~~a~~~~~~~------------~~~f~~~l~~~~~  668 (814)
T 3mkq_A          607 QTLTLRGEIEEAIENVLPN------VEGKDSLTKIARFLEGQEYYEEALNISPDQ------------DQKFELALKVGQL  668 (814)
T ss_dssp             HHHHHTTCHHHHHHHTGGG------CCCHHHHHHHHHHHHHTTCHHHHHHHCCCH------------HHHHHHHHHHTCH
T ss_pred             hHHHHhCCHHHHHHHHHhc------CCchHHHHHHHHHHHhCCChHHheecCCCc------------chheehhhhcCCH
Confidence            33456788888876 4422      111333478888889999999998765321            1123445678999


Q ss_pred             HHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 036275          161 EKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMI  206 (271)
Q Consensus       161 ~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~  206 (271)
                      ++|.++.+.+.      +...|..+...+.+.|+++.|.++|..+.
T Consensus       669 ~~A~~~~~~~~------~~~~W~~la~~al~~~~~~~A~~~y~~~~  708 (814)
T 3mkq_A          669 TLARDLLTDES------AEMKWRALGDASLQRFNFKLAIEAFTNAH  708 (814)
T ss_dssp             HHHHHHHTTCC------CHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred             HHHHHHHHhhC------cHhHHHHHHHHHHHcCCHHHHHHHHHHcc
Confidence            99999987663      67899999999999999999999999875

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=97.17  E-value=0.012  Score=47.82  Aligned_cols=139  Identities=7%  Similarity=-0.025  Sum_probs=83.0

Q ss_pred             CCCHHHHHHHHHHHH--ccC---CHhHHHHHHHHHHhCCCCCC-hhhHHHHHHHHH----cCC----CHHHHHHHHHhch
Q 036275          106 KPDTFVINSMLNLYG--RLG---QFEKMEEVLTAMEKGSYAAD-ISTYNILINIYG----RGG----FIEKMEGLFQSLP  171 (271)
Q Consensus       106 ~~~~~~~~~li~~~~--~~g---~~~~a~~~~~~m~~~~~~~~-~~~~~~li~~~~----~~g----~~~~a~~~~~~m~  171 (271)
                      +.+...|...+++..  ..+   +..+|..+|++..+.  .|+ ...|..+.-+|.    ..+    ........++...
T Consensus       191 p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~l--DP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~  268 (372)
T 3ly7_A          191 PHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQS--SPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIV  268 (372)
T ss_dssp             CSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHH
Confidence            445556666665543  222   346788888888776  343 445544444332    111    1111111122111


Q ss_pred             h-CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhcccchh
Q 036275          172 A-KRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKDMKTAL  248 (271)
Q Consensus       172 ~-~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~  248 (271)
                      . .....+..+|..+...+...|++++|...+++..+.+  |+...|..+-..+...|++++|.+.+++...-++...
T Consensus       269 a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~  344 (372)
T 3ly7_A          269 TLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGAN  344 (372)
T ss_dssp             TCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHH
T ss_pred             hcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcC
Confidence            1 1114466777777777777788888888888888764  6777777777777888888888888888777665553

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=97.17  E-value=0.0016  Score=54.55  Aligned_cols=94  Identities=10%  Similarity=-0.016  Sum_probs=73.4

Q ss_pred             chHHHHHH-hcCHHHHHHHHHHHHHcC---CCC----CHHHHHHHHHHHHhcCChHHHHHHHHHHHHC-----C-CCCCH
Q 036275           44 PNLFVFIF-SIYFSDAHAVFEEMKRLG---ITP----TMKSHMLLLTAYSKTGNVAKCEGVINQMHKS-----G-LKPDT  109 (271)
Q Consensus        44 y~~ll~~~-~g~~~~A~~~~~~~~~~~---~~~----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-----~-~~~~~  109 (271)
                      .+.+-... .|++++|+.++++..+..   ..|    ...+++.+...|...|++++|+.++++..+.     | -.|+.
T Consensus       291 l~~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~  370 (429)
T 3qwp_A          291 LKKIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVR  370 (429)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHH
T ss_pred             HHHHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHH
Confidence            34445555 999999999999987542   222    3677899999999999999999999887643     2 23333


Q ss_pred             -HHHHHHHHHHHccCCHhHHHHHHHHHHh
Q 036275          110 -FVINSMLNLYGRLGQFEKMEEVLTAMEK  137 (271)
Q Consensus       110 -~~~~~li~~~~~~g~~~~a~~~~~~m~~  137 (271)
                       .+++.|...|...|++++|+.++++..+
T Consensus       371 a~~l~nLa~~~~~~g~~~eA~~~~~~Al~  399 (429)
T 3qwp_A          371 GVQVMKVGKLQLHQGMFPQAMKNLRLAFD  399 (429)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence             5689999999999999999999987754

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=97.10  E-value=0.0025  Score=40.93  Aligned_cols=58  Identities=14%  Similarity=0.116  Sum_probs=44.6

Q ss_pred             HHHHHHcCCCHHHHHHHHHhchhCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 036275          150 LINIYGRGGFIEKMEGLFQSLPAKRLKPDVV-TWTSRLAAYSRKKLYRRCLEIFEEMIDA  208 (271)
Q Consensus       150 li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~-~~~~li~~~~~~g~~~~a~~~~~~m~~~  208 (271)
                      ....+.+.|++++|.+.|++..+.. +.+.. .+..+..++...|++++|...|++..+.
T Consensus         6 ~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~   64 (99)
T 2kc7_A            6 TIKELINQGDIENALQALEEFLQTE-PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL   64 (99)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence            4566778888888888888877652 22456 7788888888888888888888888775

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=97.09  E-value=0.0025  Score=40.96  Aligned_cols=51  Identities=18%  Similarity=0.107  Sum_probs=25.8

Q ss_pred             hcCHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 036275           52 SIYFSDAHAVFEEMKRLGITPTMK-SHMLLLTAYSKTGNVAKCEGVINQMHKS  103 (271)
Q Consensus        52 ~g~~~~A~~~~~~~~~~~~~~~~~-~~~~li~~~~~~~~~~~a~~~~~~m~~~  103 (271)
                      .|++++|++.|++..+.. +.+.. .|..+..++...|++++|...|++..+.
T Consensus        13 ~~~~~~A~~~~~~al~~~-p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~   64 (99)
T 2kc7_A           13 QGDIENALQALEEFLQTE-PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL   64 (99)
T ss_dssp             HTCHHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence            555555555555554443 23344 4555555555555555555555555444

>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}

Probab=96.89  E-value=0.052  Score=39.15  Aligned_cols=131  Identities=12%  Similarity=0.154  Sum_probs=90.1

Q ss_pred             HHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCH
Q 036275           81 LTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFI  160 (271)
Q Consensus        81 i~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~  160 (271)
                      .....+.|+++.|.++.+++      -+...|..|.+.....|+++-|++.|.....         +..+.-.|...|+.
T Consensus        12 F~LAL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~   76 (177)
T 3mkq_B           12 FDLALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDV   76 (177)
T ss_dssp             HHHHHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCH
T ss_pred             HHHHHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCH
Confidence            34456778888888887665      3677888888888888998888888877643         34555667777888


Q ss_pred             HHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHH
Q 036275          161 EKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM  240 (271)
Q Consensus       161 ~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~  240 (271)
                      ++..++-+.....|      -++.....+...|+++++.++|.+   .|-.|....      .....|..+.|.++.+.+
T Consensus        77 e~L~kla~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~---~~r~~eA~~------~A~t~g~~~~a~~~~~~~  141 (177)
T 3mkq_B           77 NKLSKMQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAE---GGSLPLAYA------VAKANGDEAAASAFLEQA  141 (177)
T ss_dssp             HHHHHHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHH---TTCHHHHHH------HHHHTTCHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHH---CCChHHHHH------HHHHcCcHHHHHHHHHHh
Confidence            77777766655554      266667777788899988888754   332222111      122357778888887776


Q ss_pred             H
Q 036275          241 H  241 (271)
Q Consensus       241 ~  241 (271)
                      .
T Consensus       142 ~  142 (177)
T 3mkq_B          142 E  142 (177)
T ss_dssp             T
T ss_pred             C
Confidence            4

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=96.75  E-value=0.022  Score=37.22  Aligned_cols=67  Identities=10%  Similarity=-0.039  Sum_probs=41.0

Q ss_pred             CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCC------CCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhC
Q 036275           72 PTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSG------LKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKG  138 (271)
Q Consensus        72 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~------~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~  138 (271)
                      .++..+..+...+.+.|+++.|...|+...+.-      ..+....+..+..++.+.|+++.|..++++..+.
T Consensus         3 Lsa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l   75 (104)
T 2v5f_A            3 LTAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL   75 (104)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence            355556666677777777777777776655421      1224455666666666666666666666666654

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=96.68  E-value=0.038  Score=35.35  Aligned_cols=67  Identities=7%  Similarity=-0.083  Sum_probs=36.3

Q ss_pred             CCCHHHHHHHHHHHHhcCC---hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhC
Q 036275           71 TPTMKSHMLLLTAYSKTGN---VAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKG  138 (271)
Q Consensus        71 ~~~~~~~~~li~~~~~~~~---~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~  138 (271)
                      +.++..+..+..++...++   .++|..++++..+.... +......+...+.+.|++++|+..|+.+.+.
T Consensus         3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~-~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~   72 (93)
T 3bee_A            3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPY-NEAALSLIANDHFISFRFQEAIDTWVLLLDS   72 (93)
T ss_dssp             CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred             CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            3455555555555543333   45666666666554321 3444555555566666666666666666554

>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}

Probab=96.59  E-value=0.12  Score=37.29  Aligned_cols=124  Identities=10%  Similarity=0.056  Sum_probs=93.5

Q ss_pred             hcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHhHHHHH
Q 036275           52 SIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEV  131 (271)
Q Consensus        52 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~  131 (271)
                      .|+++.|.++.+.+      .+...|..|.....+.|+++-|.+.|.+...         +..+.-.|...|+.++..++
T Consensus        18 lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~kl   82 (177)
T 3mkq_B           18 YGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLSKM   82 (177)
T ss_dssp             TTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHHHH
T ss_pred             cCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHHHH
Confidence            89999999998766      3678999999999999999999999988763         45666677788998888777


Q ss_pred             HHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 036275          132 LTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEM  205 (271)
Q Consensus       132 ~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m  205 (271)
                      -+.....|      -++.....+...|+++++.++|.+.-..         ..........|..+.|.++..++
T Consensus        83 a~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~~~r~---------~eA~~~A~t~g~~~~a~~~~~~~  141 (177)
T 3mkq_B           83 QNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAEGGSL---------PLAYAVAKANGDEAAASAFLEQA  141 (177)
T ss_dssp             HHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHHTTCH---------HHHHHHHHHTTCHHHHHHHHHHT
T ss_pred             HHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHHCCCh---------HHHHHHHHHcCcHHHHHHHHHHh
Confidence            66666554      2566677778889999999999765431         12222223356777788887665

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=96.52  E-value=0.014  Score=41.11  Aligned_cols=81  Identities=11%  Similarity=0.106  Sum_probs=42.2

Q ss_pred             HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC---ChHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHccCCHhHHHH
Q 036275           56 SDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTG---NVAKCEGVINQMHKSGLKP--DTFVINSMLNLYGRLGQFEKMEE  130 (271)
Q Consensus        56 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~---~~~~a~~~~~~m~~~~~~~--~~~~~~~li~~~~~~g~~~~a~~  130 (271)
                      ..+.+-|.+..+.| +++..+...+.-++++.+   +.++++.++++..+.. .|  ....+-.+.-++.+.|++++|.+
T Consensus        15 ~~~~~~y~~e~~~~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~~   92 (152)
T 1pc2_A           15 LKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKALK   92 (152)
T ss_dssp             HHHHHHHHHHHHTT-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred             HHHHHHHHHHHccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHHH
Confidence            34444455444444 345555555555666655   4446666666655543 12  22333344445556666666666


Q ss_pred             HHHHHHhC
Q 036275          131 VLTAMEKG  138 (271)
Q Consensus       131 ~~~~m~~~  138 (271)
                      +++.+.+.
T Consensus        93 y~~~lL~i  100 (152)
T 1pc2_A           93 YVRGLLQT  100 (152)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHhc
Confidence            66666554

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=96.40  E-value=0.026  Score=36.11  Aligned_cols=65  Identities=6%  Similarity=-0.082  Sum_probs=31.8

Q ss_pred             CHHHHHHHHHHHHccCC---HhHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHhchhC
Q 036275          108 DTFVINSMLNLYGRLGQ---FEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAK  173 (271)
Q Consensus       108 ~~~~~~~li~~~~~~g~---~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~  173 (271)
                      +...+..+..++...++   .++|..++++..+.. +.++.....+...+.+.|++++|...|+++.+.
T Consensus         5 ~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~d-p~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~   72 (93)
T 3bee_A            5 TATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLE-PYNEAALSLIANDHFISFRFQEAIDTWVLLLDS   72 (93)
T ss_dssp             CHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred             CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            34444444444433322   355555555555542 233445555555555555555555555555543

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=96.38  E-value=0.048  Score=38.32  Aligned_cols=78  Identities=17%  Similarity=0.050  Sum_probs=35.4

Q ss_pred             HHHHHHHHHhCCCCCChhhHHHHHHHHHcCC---CHHHHHHHHHhchhCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHH
Q 036275          128 MEEVLTAMEKGSYAADISTYNILINIYGRGG---FIEKMEGLFQSLPAKRLKP--DVVTWTSRLAAYSRKKLYRRCLEIF  202 (271)
Q Consensus       128 a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g---~~~~a~~~~~~m~~~g~~~--~~~~~~~li~~~~~~g~~~~a~~~~  202 (271)
                      +.+-|.+..+.| +++..+...+..++++++   +.+++..+|++..+.. .|  ....+..+.-+|.+.|++++|.+.+
T Consensus        17 ~~~~y~~e~~~~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~   94 (152)
T 1pc2_A           17 FEKKFQSEKAAG-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKALKYV   94 (152)
T ss_dssp             HHHHHHHHHHTT-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHHHHH
T ss_pred             HHHHHHHHHccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHHHHH
Confidence            333343333333 244444444555555554   3335555555544432 12  1233444444445555555555555


Q ss_pred             HHHHH
Q 036275          203 EEMID  207 (271)
Q Consensus       203 ~~m~~  207 (271)
                      +.+++
T Consensus        95 ~~lL~   99 (152)
T 1pc2_A           95 RGLLQ   99 (152)
T ss_dssp             HHHHH
T ss_pred             HHHHh
Confidence            55554

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=96.17  E-value=0.079  Score=34.45  Aligned_cols=67  Identities=7%  Similarity=-0.091  Sum_probs=48.5

Q ss_pred             CChhhHHHHHHHHHcCCCHHHHHHHHHhchhC------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 036275          142 ADISTYNILINIYGRGGFIEKMEGLFQSLPAK------RLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDA  208 (271)
Q Consensus       142 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~------g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~  208 (271)
                      .+...+-.|...+.+.|+++.|...|+...+.      +-.+....+..+..++.+.|++++|...+++..+.
T Consensus         3 Lsa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l   75 (104)
T 2v5f_A            3 LTAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL   75 (104)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence            45666677888888888888888888876542      11234567777888888888888888888887764

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=95.76  E-value=0.1  Score=40.87  Aligned_cols=81  Identities=14%  Similarity=0.067  Sum_probs=37.7

Q ss_pred             HHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHhc-----CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc-CCHh
Q 036275           56 SDAHAVFEEMKRLGITPT---MKSHMLLLTAYSKT-----GNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRL-GQFE  126 (271)
Q Consensus        56 ~~A~~~~~~~~~~~~~~~---~~~~~~li~~~~~~-----~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~-g~~~  126 (271)
                      ..|...+++..+.+  |+   ...|..+...|.+.     |+.++|.+.|++..+.+..-+..++....+.++.. |+.+
T Consensus       180 ~~A~a~lerAleLD--P~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~  257 (301)
T 3u64_A          180 HAAVMMLERACDLW--PSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRA  257 (301)
T ss_dssp             HHHHHHHHHHHHHC--TTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHH
T ss_pred             HHHHHHHHHHHHhC--CCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHH
Confidence            34444444444432  22   33455555555552     55555555555555542211234444444444442 5555


Q ss_pred             HHHHHHHHHHhC
Q 036275          127 KMEEVLTAMEKG  138 (271)
Q Consensus       127 ~a~~~~~~m~~~  138 (271)
                      ++.+.+++....
T Consensus       258 ~a~~~L~kAL~a  269 (301)
T 3u64_A          258 GFDEALDRALAI  269 (301)
T ss_dssp             HHHHHHHHHHHC
T ss_pred             HHHHHHHHHHcC
Confidence            555555555544

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=95.65  E-value=0.12  Score=40.47  Aligned_cols=91  Identities=12%  Similarity=0.065  Sum_probs=63.8

Q ss_pred             HHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHcc-----CCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHcC-CCHH
Q 036275           91 AKCEGVINQMHKSGLKPD---TFVINSMLNLYGRL-----GQFEKMEEVLTAMEKGSYAADISTYNILINIYGRG-GFIE  161 (271)
Q Consensus        91 ~~a~~~~~~m~~~~~~~~---~~~~~~li~~~~~~-----g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~-g~~~  161 (271)
                      ..|...+++..+.  .|+   -..|..+...|.+.     |+.++|.+.|++..+.+-.-+..++......+++. |+.+
T Consensus       180 ~~A~a~lerAleL--DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~  257 (301)
T 3u64_A          180 HAAVMMLERACDL--WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRA  257 (301)
T ss_dssp             HHHHHHHHHHHHH--CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHH
T ss_pred             HHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHH
Confidence            4566666666665  455   34677888888884     88888888888888763111377777788888884 8888


Q ss_pred             HHHHHHHhchhCCCC--CCHHHHH
Q 036275          162 KMEGLFQSLPAKRLK--PDVVTWT  183 (271)
Q Consensus       162 ~a~~~~~~m~~~g~~--~~~~~~~  183 (271)
                      ++.+.+++.......  |+....+
T Consensus       258 ~a~~~L~kAL~a~p~~~P~~~lan  281 (301)
T 3u64_A          258 GFDEALDRALAIDPESVPHNKLLV  281 (301)
T ss_dssp             HHHHHHHHHHHCCGGGCSSCHHHH
T ss_pred             HHHHHHHHHHcCCCCCCCChhHHH
Confidence            888888888876555  5544333

>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1

Probab=95.62  E-value=0.32  Score=33.40  Aligned_cols=141  Identities=12%  Similarity=-0.021  Sum_probs=88.9

Q ss_pred             HhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHH
Q 036275           85 SKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKME  164 (271)
Q Consensus        85 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~  164 (271)
                      .-.|..++..++..+...+   .+..-||-+|--....-+=+-..++++.+-+.   .|..          .+|++....
T Consensus        18 ildG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGki---FDis----------~C~NlKrVi   81 (172)
T 1wy6_A           18 LLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSY---FDLD----------KCQNLKSVV   81 (172)
T ss_dssp             HHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG---SCGG----------GCSCTHHHH
T ss_pred             HHhhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhhh---cCcH----------hhhcHHHHH
Confidence            3456677777777666654   24445555555555555555566666555432   2222          233444444


Q ss_pred             HHHHhchhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhcc
Q 036275          165 GLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKDM  244 (271)
Q Consensus       165 ~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~  244 (271)
                      ..+-.+-.     +....+..+......|.-+...+++..+... .+|+......+..+|.+.|+..++.+++++.-+.|
T Consensus        82 ~C~~~~n~-----~se~vd~ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG  155 (172)
T 1wy6_A           82 ECGVINNT-----LNEHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKKG  155 (172)
T ss_dssp             HHHHHTTC-----CCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHhcc-----hHHHHHHHHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhh
Confidence            43333321     4455677778888888888888888886543 36788888888888888888888888888887777


Q ss_pred             cch
Q 036275          245 KTA  247 (271)
Q Consensus       245 ~~~  247 (271)
                      ...
T Consensus       156 ~kE  158 (172)
T 1wy6_A          156 EKE  158 (172)
T ss_dssp             CHH
T ss_pred             hHH
Confidence            543

>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1

Probab=95.56  E-value=0.34  Score=33.30  Aligned_cols=144  Identities=11%  Similarity=0.028  Sum_probs=99.3

Q ss_pred             HHHHHH----hcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 036275           46 LFVFIF----SIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGR  121 (271)
Q Consensus        46 ~ll~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~  121 (271)
                      .|+.+-    .|.+++-.++..+..+..   +..-||-+|--....-+-+-.+++++.+-+.   -|.          ..
T Consensus        10 kLmeAK~~ildG~v~qGveii~k~~~ss---ni~E~NW~ICNiiD~a~C~y~v~vLd~IGki---FDi----------s~   73 (172)
T 1wy6_A           10 KLMDAKKFLLDGYIDEGVKIVLEITKSS---TKSEYNWFICNLLESIDCRYMFQVLDKIGSY---FDL----------DK   73 (172)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHS---CHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG---SCG----------GG
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHcCCC---CccccceeeeecchhhchhHHHHHHHHHhhh---cCc----------Hh
Confidence            345554    899999999999887753   6667777777766666666666666665432   121          23


Q ss_pred             cCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 036275          122 LGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEI  201 (271)
Q Consensus       122 ~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~  201 (271)
                      +|++..+...+-.+     ..+...++..++.....|..++-.++...+.. ..+|++...-.+..+|.+.|+..+|.++
T Consensus        74 C~NlKrVi~C~~~~-----n~~se~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eL  147 (172)
T 1wy6_A           74 CQNLKSVVECGVIN-----NTLNEHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTL  147 (172)
T ss_dssp             CSCTHHHHHHHHHT-----TCCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             hhcHHHHHHHHHHh-----cchHHHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHH
Confidence            45555555554333     23455567778888888888888888888543 2367788888888888888888888888


Q ss_pred             HHHHHHCCCC
Q 036275          202 FEEMIDAGCY  211 (271)
Q Consensus       202 ~~~m~~~~~~  211 (271)
                      +.+.-+.|++
T Consensus       148 l~~AC~kG~k  157 (172)
T 1wy6_A          148 LIEACKKGEK  157 (172)
T ss_dssp             HHHHHHTTCH
T ss_pred             HHHHHHhhhH
Confidence            8888888753

>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A

Probab=95.00  E-value=0.18  Score=35.26  Aligned_cols=112  Identities=14%  Similarity=0.120  Sum_probs=60.7

Q ss_pred             CHHHHHHHHHHHHhcCCh------HHHHHHHHHHHHCCCCCCHH-HHHHHHHH------HHccCCHhHHHHHHHHHHhCC
Q 036275           73 TMKSHMLLLTAYSKTGNV------AKCEGVINQMHKSGLKPDTF-VINSMLNL------YGRLGQFEKMEEVLTAMEKGS  139 (271)
Q Consensus        73 ~~~~~~~li~~~~~~~~~------~~a~~~~~~m~~~~~~~~~~-~~~~li~~------~~~~g~~~~a~~~~~~m~~~~  139 (271)
                      |..+|-..+...-+.|+.      ++..++|++.... ++|+.. .|...|..      +...++.++|.++|+.+.+..
T Consensus        12 ~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~h   90 (161)
T 4h7y_A           12 NPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARANC   90 (161)
T ss_dssp             SHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHHC
T ss_pred             CHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh
Confidence            455555555555555555      5666666665553 344321 11111111      123367777777777775542


Q ss_pred             CCCChhhHHHHHHHHHcCCCHHHHHHHHHhchhCCCCCCHHHHHHHHH
Q 036275          140 YAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLA  187 (271)
Q Consensus       140 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~  187 (271)
                      -.. ...|-.....-.++|++.+|.+++......+.+| .......|+
T Consensus        91 KkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~-~~~le~a~~  136 (161)
T 4h7y_A           91 KKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVP-LEMLEIALR  136 (161)
T ss_dssp             TTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBC-HHHHHHHHH
T ss_pred             HHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCc-HHHHHHHHH
Confidence            122 6666666666677777777777777777665443 333444443

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=94.80  E-value=0.17  Score=34.18  Aligned_cols=81  Identities=15%  Similarity=0.056  Sum_probs=38.7

Q ss_pred             hHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHH---HHHHHHhchhCCCCC--CHHHHHHHHHHHHhcCCHHHHHH
Q 036275          126 EKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEK---MEGLFQSLPAKRLKP--DVVTWTSRLAAYSRKKLYRRCLE  200 (271)
Q Consensus       126 ~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~---a~~~~~~m~~~g~~~--~~~~~~~li~~~~~~g~~~~a~~  200 (271)
                      ..+.+-+......| .++..+--.+..++.++.+...   ++.+++++...+ .|  .......|.-++.+.|++++|.+
T Consensus        18 ~~~~~~y~~e~~~~-~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg~Y~~A~~   95 (126)
T 1nzn_A           18 LKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKALK   95 (126)
T ss_dssp             HHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHhccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhhhHHHHHH
Confidence            33444444333333 2444444445555555555444   555555555442 12  12233444445556666666666


Q ss_pred             HHHHHHHC
Q 036275          201 IFEEMIDA  208 (271)
Q Consensus       201 ~~~~m~~~  208 (271)
                      .++.+++.
T Consensus        96 ~~~~lL~~  103 (126)
T 1nzn_A           96 YVRGLLQT  103 (126)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHh
Confidence            66665553

>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...

Probab=94.57  E-value=0.36  Score=31.10  Aligned_cols=45  Identities=18%  Similarity=0.216  Sum_probs=22.3

Q ss_pred             HHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 036275          162 KMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMI  206 (271)
Q Consensus       162 ~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~  206 (271)
                      +..+-+..+....+.|++....+.+++|.+.+++..|.++|+-.+
T Consensus        28 e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK   72 (109)
T 1v54_E           28 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVK   72 (109)
T ss_dssp             HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence            344444444444445555555555555555555555555554444

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=94.52  E-value=0.19  Score=41.36  Aligned_cols=73  Identities=14%  Similarity=0.092  Sum_probs=50.1

Q ss_pred             HHHHHHHHHcCCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-----HCCCCCCHHHHHHH
Q 036275          147 YNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMI-----DAGCYPDGGTAKVL  220 (271)
Q Consensus       147 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~-----~~~~~p~~~~~~~l  220 (271)
                      ...++..+...|+++++...+..+.... +.+...|..+|.++.+.|+..+|.+.|+...     +.|+.|+..+-...
T Consensus       174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~l~  251 (388)
T 2ff4_A          174 HTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRALN  251 (388)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHH
Confidence            3456677777788887777777766542 3466677888888888888888877777654     35777777664433

>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=94.50  E-value=1.8  Score=36.23  Aligned_cols=190  Identities=8%  Similarity=0.065  Sum_probs=123.0

Q ss_pred             hcCHHHHHHHHHHHHHc-----CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH----Hcc
Q 036275           52 SIYFSDAHAVFEEMKRL-----GITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLY----GRL  122 (271)
Q Consensus        52 ~g~~~~A~~~~~~~~~~-----~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~----~~~  122 (271)
                      .|+++.|++.+..+.+.     +.+-+......++..|...|+++...+.+.-+......+ ......+++.+    ...
T Consensus        29 ~~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~ql-k~ai~~~V~~~~~~l~~~  107 (445)
T 4b4t_P           29 QNDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQL-KLSIQYMIQKVMEYLKSS  107 (445)
T ss_dssp             HHHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTS-HHHHHHHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhh-HHHHHHHHHHHHHHHhcC
Confidence            67888998888777643     345567778889999999999999988877665543232 22223344333    233


Q ss_pred             CCHhHH--HHHHHHHH---hCCCCC---ChhhHHHHHHHHHcCCCHHHHHHHHHhchhC--CCCCC---HHHHHHHHHHH
Q 036275          123 GQFEKM--EEVLTAME---KGSYAA---DISTYNILINIYGRGGFIEKMEGLFQSLPAK--RLKPD---VVTWTSRLAAY  189 (271)
Q Consensus       123 g~~~~a--~~~~~~m~---~~~~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--g~~~~---~~~~~~li~~~  189 (271)
                      ...+..  ..+.+...   +..+..   .......|...+-..|++.+|.+++..+...  |....   ...+...++.|
T Consensus       108 ~~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~  187 (445)
T 4b4t_P          108 KSLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELS  187 (445)
T ss_dssp             CTTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHH
T ss_pred             CchhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence            333322  22222111   111111   2233467888999999999999999997642  22111   24677778899


Q ss_pred             HhcCCHHHHHHHHHHHHH----CCCCCCH--HHHHHHHHHHhccCcHHHHHHHHHHHHh
Q 036275          190 SRKKLYRRCLEIFEEMID----AGCYPDG--GTAKVLISACSSEDQIEQVTTLVRTMHK  242 (271)
Q Consensus       190 ~~~g~~~~a~~~~~~m~~----~~~~p~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~  242 (271)
                      ...+++..|..+++....    ....|+.  ..+...+..+...+++.+|.+.|.++.+
T Consensus       188 l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~  246 (445)
T 4b4t_P          188 ILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQ  246 (445)
T ss_dssp             HHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred             HHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence            999999999999988642    2222322  3456677778888999999988888754

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=94.46  E-value=0.45  Score=32.17  Aligned_cols=65  Identities=9%  Similarity=0.030  Sum_probs=28.1

Q ss_pred             CCHHHHHHHHHHHHhcCChHH---HHHHHHHHHHCCCCC--CHHHHHHHHHHHHccCCHhHHHHHHHHHHh
Q 036275           72 PTMKSHMLLLTAYSKTGNVAK---CEGVINQMHKSGLKP--DTFVINSMLNLYGRLGQFEKMEEVLTAMEK  137 (271)
Q Consensus        72 ~~~~~~~~li~~~~~~~~~~~---a~~~~~~m~~~~~~~--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  137 (271)
                      ++..+-..+.-++.+.++...   ++.+++.+.+.+ .|  ...-.-.|.-++.+.|++++|.++++.+.+
T Consensus        33 ~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~  102 (126)
T 1nzn_A           33 VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQ  102 (126)
T ss_dssp             CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence            444444444444444444333   445555444432 11  111222233344455555555555555544

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=94.38  E-value=0.21  Score=41.12  Aligned_cols=74  Identities=5%  Similarity=-0.045  Sum_probs=57.8

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHh-----CCCCCChhhHHHH
Q 036275           76 SHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEK-----GSYAADISTYNIL  150 (271)
Q Consensus        76 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-----~~~~~~~~~~~~l  150 (271)
                      ....++..+...|+.+++...+..+.... +.+...+..+|.++.+.|+..+|.+.|+...+     .|+.|+..+-...
T Consensus       173 a~~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~l~  251 (388)
T 2ff4_A          173 AHTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRALN  251 (388)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHH
Confidence            45567788888899999998888887664 45777888999999999999999988887653     4888887765433

>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A

Probab=94.37  E-value=0.31  Score=34.04  Aligned_cols=58  Identities=7%  Similarity=-0.051  Sum_probs=34.0

Q ss_pred             CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhcccchhHHH
Q 036275          193 KLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKDMKTALPIY  251 (271)
Q Consensus       193 g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~  251 (271)
                      +|.++|.++|+.++...-.. ...|....+--.++|++++|.+++.+....++.+...+
T Consensus        74 ~D~d~aR~vy~~a~~~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~l  131 (161)
T 4h7y_A           74 QEPDDARDYFQMARANCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEML  131 (161)
T ss_dssp             HCGGGCHHHHHHHHHHCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHHH
T ss_pred             cCHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHHH
Confidence            56666666766665432122 44555555555667777777777777666655554443

>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...

Probab=94.07  E-value=0.57  Score=30.16  Aligned_cols=64  Identities=8%  Similarity=0.194  Sum_probs=51.3

Q ss_pred             HHHHHHHHHH-hcC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhcc
Q 036275          181 TWTSRLAAYS-RKK-LYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKDM  244 (271)
Q Consensus       181 ~~~~li~~~~-~~g-~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~  244 (271)
                      -|..--..|. +.. |.-++.+-++.+....+.|+..+..+.+++|.+.+|+..|.++++-++.+.
T Consensus        10 eF~aRy~~~F~~~~iD~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~   75 (109)
T 1v54_E           10 EFDARWVTYFNKPDIDAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA   75 (109)
T ss_dssp             HHHHHHHHHHTCTTCCHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHcCCcCccHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh
Confidence            3433333333 444 566888888999999999999999999999999999999999999987544

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=94.06  E-value=0.43  Score=42.80  Aligned_cols=118  Identities=12%  Similarity=0.039  Sum_probs=75.4

Q ss_pred             hcC-HHHHHHHHHHHHHcCCCCCHHHH-HHHHHHHHhcCC-hHHHHHHHHHHHHC------CCC-CCH----------HH
Q 036275           52 SIY-FSDAHAVFEEMKRLGITPTMKSH-MLLLTAYSKTGN-VAKCEGVINQMHKS------GLK-PDT----------FV  111 (271)
Q Consensus        52 ~g~-~~~A~~~~~~~~~~~~~~~~~~~-~~li~~~~~~~~-~~~a~~~~~~m~~~------~~~-~~~----------~~  111 (271)
                      .++ ++.|..+|+++.+.. +.....+ ..++..+...++ --+|.+++.+..+.      ... .+.          ..
T Consensus       261 t~~~~~~a~~~le~L~~~~-p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~L  339 (754)
T 4gns_B          261 TPSLVDFTIDYLKGLTKKD-PIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSARLMNCMSDL  339 (754)
T ss_dssp             CGGGHHHHHHHHHHHHHHC-GGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHH
T ss_pred             cccHHHHHHHHHHHHHhhC-CchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccccccccCcchHH
Confidence            555 688999999998875 2222222 233333333322 22345555443321      111 111          11


Q ss_pred             HHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHhch
Q 036275          112 INSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLP  171 (271)
Q Consensus       112 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~  171 (271)
                      .+.=.+.+...|+++.|+++-++....- |.+-.+|..|..+|...|+++.|+-.+..+.
T Consensus       340 L~~Qa~FLl~K~~~elAL~~Ak~AV~~a-PseF~tW~~La~vYi~l~d~e~ALLtLNScP  398 (754)
T 4gns_B          340 LNIQTNFLLNRGDYELALGVSNTSTELA-LDSFESWYNLARCHIKKEEYEKALFAINSMP  398 (754)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred             HHHHHHHHhccCcHHHHHHHHHHHHhcC-chhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence            2222445667899999999999998862 4457899999999999999999999999875

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=93.85  E-value=0.35  Score=43.31  Aligned_cols=124  Identities=17%  Similarity=0.158  Sum_probs=79.8

Q ss_pred             HHHHHHHHhcCC-hHHHHHHHHHHHHCCCCCCHHH--HHHHHHHHHccCC-HhHHHHHHHHHHhC------CCCC-Ch--
Q 036275           78 MLLLTAYSKTGN-VAKCEGVINQMHKSGLKPDTFV--INSMLNLYGRLGQ-FEKMEEVLTAMEKG------SYAA-DI--  144 (271)
Q Consensus        78 ~~li~~~~~~~~-~~~a~~~~~~m~~~~~~~~~~~--~~~li~~~~~~g~-~~~a~~~~~~m~~~------~~~~-~~--  144 (271)
                      ..++..+.-.++ .+.|..+++++.+.  .|...+  ...++......++ --+|.+++.+..+.      ..++ +.  
T Consensus       252 ~~Ll~~~~~t~~~~~~a~~~le~L~~~--~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~  329 (754)
T 4gns_B          252 YSLKSFIAITPSLVDFTIDYLKGLTKK--DPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADS  329 (754)
T ss_dssp             HHHHHHHHTCGGGHHHHHHHHHHHHHH--CGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHH
T ss_pred             HHHHHHHcccccHHHHHHHHHHHHHhh--CCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhccccccc
Confidence            345555555566 58899999999887  343333  3334444433332 22344554443321      1111 11  


Q ss_pred             --------hhHHHHHHHHHcCCCHHHHHHHHHhchhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 036275          145 --------STYNILINIYGRGGFIEKMEGLFQSLPAKRLKPD-VVTWTSRLAAYSRKKLYRRCLEIFEEM  205 (271)
Q Consensus       145 --------~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~m  205 (271)
                              .....-.+.+...|+++-|+++-++....  .|+ -.+|..|...|...|+++.|+-.+..+
T Consensus       330 ~~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~--aPseF~tW~~La~vYi~l~d~e~ALLtLNSc  397 (754)
T 4gns_B          330 ARLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTEL--ALDSFESWYNLARCHIKKEEYEKALFAINSM  397 (754)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred             ccccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhc--CchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence                    12223345677899999999999998876  455 689999999999999999999998875

>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}

Probab=92.98  E-value=0.84  Score=31.11  Aligned_cols=59  Identities=19%  Similarity=0.211  Sum_probs=31.9

Q ss_pred             HHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 036275          162 KMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLI  221 (271)
Q Consensus       162 ~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~  221 (271)
                      +..+-+..+....+.|++......+++|.+.+|+..|.++|+-.+.+ +.+...+|..++
T Consensus        71 ElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K-~~~~~~iY~y~l  129 (152)
T 2y69_E           71 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVI  129 (152)
T ss_dssp             HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHH
T ss_pred             HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-cCCchhhHHHHH
Confidence            34444455555555666666666666666666666666666555443 223344454444

>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}

Probab=91.93  E-value=1.5  Score=29.91  Aligned_cols=51  Identities=6%  Similarity=0.132  Sum_probs=45.5

Q ss_pred             CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhcc
Q 036275          194 LYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKDM  244 (271)
Q Consensus       194 ~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~  244 (271)
                      |.-+..+-++.+....+.|+..+....+++|.+.+|+..|.++++-++.+.
T Consensus        68 D~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~  118 (152)
T 2y69_E           68 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA  118 (152)
T ss_dssp             CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT
T ss_pred             cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc
Confidence            556778888888889999999999999999999999999999999987654

>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=90.85  E-value=6.4  Score=32.92  Aligned_cols=153  Identities=12%  Similarity=0.102  Sum_probs=98.8

Q ss_pred             CChHHHHHHHHHHHH-----CCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhC-CCCCChhhHHHHHHHH----HcC
Q 036275           88 GNVAKCEGVINQMHK-----SGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKG-SYAADISTYNILINIY----GRG  157 (271)
Q Consensus        88 ~~~~~a~~~~~~m~~-----~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-~~~~~~~~~~~li~~~----~~~  157 (271)
                      ++++.|++.+-.+.+     .....+......++..|...|+++...+.+.-+.+. |..  ......+++.+    ...
T Consensus        30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~ql--k~ai~~~V~~~~~~l~~~  107 (445)
T 4b4t_P           30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQL--KLSIQYMIQKVMEYLKSS  107 (445)
T ss_dssp             HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTS--HHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhh--HHHHHHHHHHHHHHHhcC
Confidence            567778777755543     234556777888999999999999998887766543 322  22233444333    223


Q ss_pred             CC--HHHHHHHHHhchh--CC-CCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--CCCCCC---HHHHHHHHHHH
Q 036275          158 GF--IEKMEGLFQSLPA--KR-LKP---DVVTWTSRLAAYSRKKLYRRCLEIFEEMID--AGCYPD---GGTAKVLISAC  224 (271)
Q Consensus       158 g~--~~~a~~~~~~m~~--~g-~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~--~~~~p~---~~~~~~l~~~~  224 (271)
                      ..  .+.-..+.+....  .| +-.   .......|...+...|++.+|..++..+..  .|....   ...+...++.|
T Consensus       108 ~~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~  187 (445)
T 4b4t_P          108 KSLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELS  187 (445)
T ss_dssp             CTTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHH
T ss_pred             CchhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence            32  2233334433321  12 222   123456778889999999999999999763  333222   24667778889


Q ss_pred             hccCcHHHHHHHHHHHHh
Q 036275          225 SSEDQIEQVTTLVRTMHK  242 (271)
Q Consensus       225 ~~~g~~~~a~~~~~~~~~  242 (271)
                      ...+++.+|..+++++..
T Consensus       188 l~~~d~~~a~~~~~ki~~  205 (445)
T 4b4t_P          188 ILKGDYSQATVLSRKILK  205 (445)
T ss_dssp             HHHTCHHHHHHHHHHHHH
T ss_pred             HHCCCHHHHHHHHHHHHH
Confidence            999999999999998753

>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}

Probab=90.33  E-value=2.4  Score=27.21  Aligned_cols=85  Identities=13%  Similarity=0.019  Sum_probs=40.8

Q ss_pred             CHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 036275          124 QFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFE  203 (271)
Q Consensus       124 ~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~  203 (271)
                      ..++|..+-+.+...+-  ...+--+-+..+...|++++|..+.+.+-    .||...|-.|-..  +.|..+++..-+.
T Consensus        22 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c----~pdlepw~ALce~--rlGl~s~le~rL~   93 (116)
T 2p58_C           22 YHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLA----YPDLEPWLALCEY--RLGLGSALESRLN   93 (116)
T ss_dssp             CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSC----CGGGHHHHHHHHH--HHTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCC----CchHHHHHHHHHH--hcccHHHHHHHHH
Confidence            45566666555555432  22222233344556666666666655543    4555555444332  4455555555554


Q ss_pred             HHHHCCCCCCHHHH
Q 036275          204 EMIDAGCYPDGGTA  217 (271)
Q Consensus       204 ~m~~~~~~p~~~~~  217 (271)
                      .+...| .|....|
T Consensus        94 ~la~sg-~p~~q~F  106 (116)
T 2p58_C           94 RLARSQ-DPRIQTF  106 (116)
T ss_dssp             HHTTCC-CHHHHHH
T ss_pred             HHHhCC-CHHHHHH
Confidence            554444 3333333

>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}

Probab=89.28  E-value=2.3  Score=27.25  Aligned_cols=85  Identities=13%  Similarity=0.032  Sum_probs=40.3

Q ss_pred             CHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 036275          124 QFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFE  203 (271)
Q Consensus       124 ~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~  203 (271)
                      ..++|..+-+.+...+-  ...+--+-+..+...|++++|..+.+.+-    .||...|-.|-.  -+.|..+++..-+.
T Consensus        21 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c----~pdlepw~ALce--~rlGl~s~le~rL~   92 (115)
T 2uwj_G           21 CHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNP----WPALEPWFALCE--WHLGLGAALDRRLA   92 (115)
T ss_dssp             CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCC----CGGGHHHHHHHH--HHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCC----CchHHHHHHHHH--HhcccHHHHHHHHH
Confidence            45556555555555432  22222233344555666666655555443    355554444432  24455555555554


Q ss_pred             HHHHCCCCCCHHHH
Q 036275          204 EMIDAGCYPDGGTA  217 (271)
Q Consensus       204 ~m~~~~~~p~~~~~  217 (271)
                      .+...| .|....|
T Consensus        93 ~la~sg-~p~~q~F  105 (115)
T 2uwj_G           93 GLGGSS-DPALADF  105 (115)
T ss_dssp             HHHTCS-SHHHHHH
T ss_pred             HHHhCC-CHHHHHH
Confidence            555444 3333333

>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}

Probab=89.17  E-value=6.5  Score=37.29  Aligned_cols=143  Identities=10%  Similarity=0.043  Sum_probs=89.3

Q ss_pred             HHHHHHccCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHhchhC----CC---------------
Q 036275          115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAK----RL---------------  175 (271)
Q Consensus       115 li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~---------------  175 (271)
                      ++..+...+..+.+.++....     +.+...--.+..+|...|++++|.+.|++....    ..               
T Consensus       818 l~~~l~~~~~~~~~~~l~~~~-----~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~  892 (1139)
T 4fhn_B          818 LVEKLFLFKQYNACMQLIGWL-----NSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKY  892 (1139)
T ss_dssp             HHHHHHHHSCTTHHHHHHHHS-----CCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTT
T ss_pred             HHHHHHHhhhHHHHHHHhhhc-----cCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccc
Confidence            444555566666555543322     234444456778888999999999999876321    00               


Q ss_pred             ---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHhccCcHHHHHHHHHHHHhcc--cc
Q 036275          176 ---KPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDG----GTAKVLISACSSEDQIEQVTTLVRTMHKDM--KT  246 (271)
Q Consensus       176 ---~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--~~  246 (271)
                         ..-..-|..++..+.+.+.++.+.++-+...+..-.-+.    ..|..+++++...|++++|...+-.+....  ..
T Consensus       893 ~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~r~~  972 (1139)
T 4fhn_B          893 HHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPLKKS  972 (1139)
T ss_dssp             TSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSSCHH
T ss_pred             cccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHHHHH
Confidence               011234677888888889988888877766552211121    257888899999999999988887775433  22


Q ss_pred             hhHHHHHHHhhccccc
Q 036275          247 ALPIYFNLYGEKGVAR  262 (271)
Q Consensus       247 ~~~~~~~~~~~~G~~~  262 (271)
                      ....++..+++.|..+
T Consensus       973 cLr~LV~~lce~~~~~  988 (1139)
T 4fhn_B          973 CLLDFVNQLTKQGKIN  988 (1139)
T ss_dssp             HHHHHHHHHHHHCCHH
T ss_pred             HHHHHHHHHHhCCChh
Confidence            3344555555555443

>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}

Probab=89.05  E-value=16  Score=34.72  Aligned_cols=121  Identities=8%  Similarity=-0.028  Sum_probs=62.3

Q ss_pred             CHHHHHHHHHHHHhcCChHHHHHHHHHHHHC----C------------------CCCCHHHHHHHHHHHHccCCHhHHHH
Q 036275           73 TMKSHMLLLTAYSKTGNVAKCEGVINQMHKS----G------------------LKPDTFVINSMLNLYGRLGQFEKMEE  130 (271)
Q Consensus        73 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----~------------------~~~~~~~~~~li~~~~~~g~~~~a~~  130 (271)
                      ++..--.+..++...|++++|.+.|++....    .                  ...-..-|.-++..+-+.+..+.+.+
T Consensus       841 ~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~  920 (1139)
T 4fhn_B          841 DPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALE  920 (1139)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHH
T ss_pred             CcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccccccccHHHHHHHHHHHHHHcCCHHHHHH
Confidence            3333345566667777777777777654210    0                  00011234555666666666666666


Q ss_pred             HHHHHHhCCCCCC----hhhHHHHHHHHHcCCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCCH
Q 036275          131 VLTAMEKGSYAAD----ISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLY  195 (271)
Q Consensus       131 ~~~~m~~~~~~~~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~  195 (271)
                      +-....+..-+.+    ...|..+...+...|++++|...+-.+.....  -......|+...+..|..
T Consensus       921 fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~--r~~cLr~LV~~lce~~~~  987 (1139)
T 4fhn_B          921 FSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPL--KKSCLLDFVNQLTKQGKI  987 (1139)
T ss_dssp             HHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSS--CHHHHHHHHHHHHHHCCH
T ss_pred             HHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHH--HHHHHHHHHHHHHhCCCh
Confidence            5554443211111    12455666666666666666666665554422  234555555555544443

>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A

Probab=89.00  E-value=8.5  Score=31.61  Aligned_cols=56  Identities=16%  Similarity=0.065  Sum_probs=24.2

Q ss_pred             HHHHHHcCCCHHHHHHHHHhchhCCCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 036275          150 LINIYGRGGFIEKMEGLFQSLPAKRLKPD-----VVTWTSRLAAYSRKKLYRRCLEIFEEM  205 (271)
Q Consensus       150 li~~~~~~g~~~~a~~~~~~m~~~g~~~~-----~~~~~~li~~~~~~g~~~~a~~~~~~m  205 (271)
                      ++..|...|++.+|.+++.++...=-+.|     ...|-.-++.|...+++.++...+...
T Consensus       105 L~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a  165 (394)
T 3txn_A          105 LIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSA  165 (394)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence            44455555555555555444433100001     123333344455555555555555443

>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=87.20  E-value=7.6  Score=32.29  Aligned_cols=98  Identities=11%  Similarity=-0.021  Sum_probs=68.1

Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhC---CCCCChhh--H
Q 036275           75 KSHMLLLTAYSKTGNVAKCEGVINQMHKSGL--KPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKG---SYAADIST--Y  147 (271)
Q Consensus        75 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~---~~~~~~~~--~  147 (271)
                      .+...+...|.+.|+++.|.+.|.++.....  .--...+-.+++.+...+++..+...+.+....   +-.++...  .
T Consensus       132 ~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk  211 (429)
T 4b4t_R          132 QAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYK  211 (429)
T ss_dssp             SCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHH
Confidence            4567788999999999999999999987532  333466778899999999999999998887542   21222211  1


Q ss_pred             HHHHHHHHcCCCHHHHHHHHHhchh
Q 036275          148 NILINIYGRGGFIEKMEGLFQSLPA  172 (271)
Q Consensus       148 ~~li~~~~~~g~~~~a~~~~~~m~~  172 (271)
                      ..-...+...+++.+|-+.|-+...
T Consensus       212 ~~~gl~~l~~r~f~~Aa~~f~e~~~  236 (429)
T 4b4t_R          212 TYYGIHCLAVRNFKEAAKLLVDSLA  236 (429)
T ss_dssp             HHHHHGGGGTSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhChHHHHHHHHHHHhc
Confidence            1112234567888888888877543

>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A

Probab=87.12  E-value=0.00018  Score=60.25  Aligned_cols=178  Identities=11%  Similarity=0.081  Sum_probs=113.5

Q ss_pred             chHHHHHH--hcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 036275           44 PNLFVFIF--SIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGR  121 (271)
Q Consensus        44 y~~ll~~~--~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~  121 (271)
                      |..|-.++  .+++.+|++.|-   +.   -|+..|..+|.+..+.|.+++-+.++...++..-.|.+  =+.|+-+|++
T Consensus        57 Ws~LgkAqL~~~~v~eAIdsyI---kA---~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~ke~~I--DteLi~ayAk  128 (624)
T 3lvg_A           57 WSQLAKAQLQKGMVKEAIDSYI---KA---DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYV--ETELIFALAK  128 (624)
T ss_dssp             SSSHHHHTTTSSSCTTTTTSSC---CC---SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCCSTTT--THHHHHHHHT
T ss_pred             HHHHHHHHHccCchHHHHHHHH---hC---CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhccccc--HHHHHHHHHh
Confidence            77788777  666666665442   11   26667888888888888888888887666655334433  3478888888


Q ss_pred             cCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHhchhCCC--------------------CCCHHH
Q 036275          122 LGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRL--------------------KPDVVT  181 (271)
Q Consensus       122 ~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~--------------------~~~~~~  181 (271)
                      .++..+.++++.       .|+..-...+.+-|...|.++.|.-+|..+..-.-                    .-++.|
T Consensus       129 ~~rL~elEefl~-------~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~kt  201 (624)
T 3lvg_A          129 TNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRT  201 (624)
T ss_dssp             SCSSSTTTSTTS-------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCS
T ss_pred             hCcHHHHHHHHc-------CCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhH
Confidence            888766544431       35666667788888888888888888877653210                    124456


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHH
Q 036275          182 WTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMH  241 (271)
Q Consensus       182 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~  241 (271)
                      |..+-.+|...+++.-|...--.++-   .||.  ...++..|...|.+++...+++.-.
T Consensus       202 WKeV~~ACvd~~EfrLAqicGLniIv---hade--L~elv~~YE~~G~f~ELIsLlEagl  256 (624)
T 3lvg_A          202 WKEVCFACVDGKEFRLAQMCGLHIVV---HADE--LEELINYYQDRGYFEELITMLEAAL  256 (624)
T ss_dssp             HHHHTHHHHHSCTTTTTTHHHHHHHC---CSSC--CSGGGSSSSTTCCCTTSTTTHHHHT
T ss_pred             HHHHHHHHhCchHHHHHHHhcchhcc---cHHH--HHHHHHHHHhCCCHHHHHHHHHHHh
Confidence            77777777777776665554433331   2221  3345666677777777666666544

>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=85.98  E-value=5.2  Score=33.29  Aligned_cols=97  Identities=8%  Similarity=0.006  Sum_probs=69.0

Q ss_pred             HHHHHHHHHHccCCHhHHHHHHHHHHhCCCC--CChhhHHHHHHHHHcCCCHHHHHHHHHhchh---CCCCCCHHHH--H
Q 036275          111 VINSMLNLYGRLGQFEKMEEVLTAMEKGSYA--ADISTYNILINIYGRGGFIEKMEGLFQSLPA---KRLKPDVVTW--T  183 (271)
Q Consensus       111 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~--~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~---~g~~~~~~~~--~  183 (271)
                      +...+...|.+.|++++|.+.+.++......  .-...+-.+|+.+...+++..+...+.++..   .+..|+...-  .
T Consensus       133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~  212 (429)
T 4b4t_R          133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT  212 (429)
T ss_dssp             CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence            5667889999999999999999999865322  3356778889999999999999999988753   2322332211  1


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHH
Q 036275          184 SRLAAYSRKKLYRRCLEIFEEMID  207 (271)
Q Consensus       184 ~li~~~~~~g~~~~a~~~~~~m~~  207 (271)
                      .-...+...+++.+|.+.|-+...
T Consensus       213 ~~gl~~l~~r~f~~Aa~~f~e~~~  236 (429)
T 4b4t_R          213 YYGIHCLAVRNFKEAAKLLVDSLA  236 (429)
T ss_dssp             HHHHGGGGTSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhChHHHHHHHHHHHhc
Confidence            112223467889999888877654

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=85.43  E-value=6  Score=28.05  Aligned_cols=26  Identities=12%  Similarity=0.148  Sum_probs=17.4

Q ss_pred             HHHHHHHHcCCCHHHHHHHHHhchhC
Q 036275          148 NILINIYGRGGFIEKMEGLFQSLPAK  173 (271)
Q Consensus       148 ~~li~~~~~~g~~~~a~~~~~~m~~~  173 (271)
                      --+..+|.+.|++++|+.+++.+..+
T Consensus       126 ykia~C~~~l~~~~~Ai~~Le~Ip~k  151 (167)
T 3ffl_A          126 YKLAECYTVLKQDKDAIAILDGIPSR  151 (167)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHTSCGG
T ss_pred             HHHHHHHHHHCCHHHHHHHHhcCCch
Confidence            34666677777777777777776554

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=83.89  E-value=8  Score=26.26  Aligned_cols=26  Identities=4%  Similarity=-0.008  Sum_probs=12.4

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHH
Q 036275          182 WTSRLAAYSRKKLYRRCLEIFEEMID  207 (271)
Q Consensus       182 ~~~li~~~~~~g~~~~a~~~~~~m~~  207 (271)
                      +..|.-++.+.|++++|.+..+.+++
T Consensus        81 LYyLAvg~yklgdY~~Ar~y~d~lL~  106 (134)
T 3o48_A           81 LYYLTIGCYKLGEYSMAKRYVDTLFE  106 (134)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence            33444444455555555555554444

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=83.50  E-value=8.4  Score=26.17  Aligned_cols=66  Identities=11%  Similarity=0.092  Sum_probs=27.2

Q ss_pred             CCHHHHHHHHHHHHhcCCh---HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHh
Q 036275           72 PTMKSHMLLLTAYSKTGNV---AKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEK  137 (271)
Q Consensus        72 ~~~~~~~~li~~~~~~~~~---~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  137 (271)
                      |+..+-....-++.+..+.   .+++.+++++.+.+..-.....-.|.-++.+.|+++.|.++.+.+.+
T Consensus        38 vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~  106 (134)
T 3o48_A           38 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE  106 (134)
T ss_dssp             SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT
T ss_pred             CChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence            3444444444444443322   23444444444432111122233334444455555555555555444

>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}

Probab=82.95  E-value=17  Score=29.36  Aligned_cols=74  Identities=9%  Similarity=0.049  Sum_probs=49.7

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC--cHHHHHHHHHHHHhcccchhHHHHHHH
Q 036275          181 TWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSED--QIEQVTTLVRTMHKDMKTALPIYFNLY  255 (271)
Q Consensus       181 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g--~~~~a~~~~~~~~~~~~~~~~~~~~~~  255 (271)
                      ....++.-|...|+.++|.+.++++....+. ...+...+..+.-+.+  ..+.+.+++..+.+.+..+...+...+
T Consensus       219 ki~~lL~EY~~s~D~~EA~~ci~EL~~p~fh-he~V~~av~~aLE~~~~~~re~~~~LL~~L~~~glls~~q~~~Gf  294 (358)
T 3eiq_C          219 EIDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQMKRGY  294 (358)
T ss_dssp             HHHHHHHHHHHHCCHHHHHHHHHHHCCTTCH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHHHHHH
T ss_pred             HHHHHHHHhccCCCHHHHHHHHHHccCCcch-HHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCCCHHHHHHHH
Confidence            4688888899999999999999988642221 2334445555555543  345678888888877766665555444

>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A

Probab=81.56  E-value=0.15  Score=43.15  Aligned_cols=210  Identities=11%  Similarity=0.051  Sum_probs=139.3

Q ss_pred             chHHHHHH--hcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 036275           44 PNLFVFIF--SIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGR  121 (271)
Q Consensus        44 y~~ll~~~--~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~  121 (271)
                      |..+|.+.  .|.+++-++.+.-.++..  -++..=+.|+-+|++.++..+..+++.       .|+..-...+.+-|..
T Consensus        86 y~eVi~~A~~~~~~edLv~yL~MaRk~~--ke~~IDteLi~ayAk~~rL~elEefl~-------~~N~A~iq~VGDrcf~  156 (624)
T 3lvg_A           86 YMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYD  156 (624)
T ss_dssp             SSHHHHHTTTSSCCTTHHHHHHTTSTTC--CSTTTTHHHHHHHHTSCSSSTTTSTTS-------CCSSSCTHHHHHHHHH
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHHHh--cccccHHHHHHHHHhhCcHHHHHHHHc-------CCCcccHHHHHHHHHH
Confidence            99999999  999999999887555542  244455689999999998776544331       3566666788999999


Q ss_pred             cCCHhHHHHHHHHHHhCC--------------------CCCChhhHHHHHHHHHcCCCHHHHHHHHHhchhCCCCCCHHH
Q 036275          122 LGQFEKMEEVLTAMEKGS--------------------YAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVT  181 (271)
Q Consensus       122 ~g~~~~a~~~~~~m~~~~--------------------~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~  181 (271)
                      .|.++.|.-+|..+....                    -.-++.||..+-.+|...+++.-|...--.+.-.   |+  -
T Consensus       157 e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~ktWKeV~~ACvd~~EfrLAqicGLniIvh---ad--e  231 (624)
T 3lvg_A          157 EKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVH---AD--E  231 (624)
T ss_dssp             SCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCC---SS--C
T ss_pred             ccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHhCchHHHHHHHhcchhccc---HH--H
Confidence            999999998888774311                    1347889999999999999887665443333221   11  2


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHh-----------cccchhHH
Q 036275          182 WTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHK-----------DMKTALPI  250 (271)
Q Consensus       182 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----------~~~~~~~~  250 (271)
                      ...++..|-..|.+++...+++...... +....+|+-|.-.|++- .+++..+.++-...           .....|..
T Consensus       232 L~elv~~YE~~G~f~ELIsLlEaglglE-rAHmGmFTELaILYsKY-~PeKlmEHlklf~sriNipKviracE~ahLW~E  309 (624)
T 3lvg_A          232 LEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAE  309 (624)
T ss_dssp             CSGGGSSSSTTCCCTTSTTTHHHHTTST-TCCHHHHHHHHHHHHSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHH
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHhCCC-chhHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHH
Confidence            3345566677788888777777766432 45667777777666664 45555554443221           11223555


Q ss_pred             HHHHHhhccccccchhhhh
Q 036275          251 YFNLYGEKGVARSNLGQYI  269 (271)
Q Consensus       251 ~~~~~~~~G~~~~a~~~~~  269 (271)
                      ++-+|.+-..+++|...++
T Consensus       310 lvfLY~~ydE~DnA~ltMi  328 (624)
T 3lvg_A          310 LVFLYDKYEEYDNAIITMM  328 (624)
T ss_dssp             HHHHHHHHTCHHHHHHTTT
T ss_pred             HHHHHhcchhHHHHHHHHH
Confidence            6666776666666665544

>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A

Probab=81.28  E-value=3.7  Score=28.69  Aligned_cols=24  Identities=25%  Similarity=0.401  Sum_probs=12.9

Q ss_pred             HHHHHHHHHccCCHhHHHHHHHHH
Q 036275          112 INSMLNLYGRLGQFEKMEEVLTAM  135 (271)
Q Consensus       112 ~~~li~~~~~~g~~~~a~~~~~~m  135 (271)
                      .+.++.-|...|+.++|...++++
T Consensus        12 i~~lL~EY~~~~D~~EA~~cl~EL   35 (152)
T 2ion_A           12 IDMLLKEYLLSGDISEAEHCLKEL   35 (152)
T ss_dssp             HHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHHh
Confidence            344555555555555555555555

>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1

Probab=81.18  E-value=5  Score=30.98  Aligned_cols=51  Identities=10%  Similarity=0.068  Sum_probs=30.7

Q ss_pred             hcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 036275           52 SIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKS  103 (271)
Q Consensus        52 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~  103 (271)
                      .|++++|++....-.+.. |-|...-..++..+|-.|+++.|..-++...+.
T Consensus        10 ~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l   60 (273)
T 1zbp_A           10 EGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKL   60 (273)
T ss_dssp             TTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence            566666666665555554 456666666666666666666666665555544

>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1

Probab=80.93  E-value=4.2  Score=31.38  Aligned_cols=54  Identities=20%  Similarity=0.145  Sum_probs=31.0

Q ss_pred             HHccCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHhchhC
Q 036275          119 YGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAK  173 (271)
Q Consensus       119 ~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~  173 (271)
                      ..+.|+++++++....-.+.. |.|...-..++..+|-.|+++.|.+-++...+.
T Consensus         7 ll~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l   60 (273)
T 1zbp_A            7 ALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKL   60 (273)
T ss_dssp             HTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence            445566666666555555442 445555556666666666666666666555443

>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A

Probab=80.22  E-value=10  Score=25.52  Aligned_cols=70  Identities=10%  Similarity=0.205  Sum_probs=40.4

Q ss_pred             hHHHHHHHHHcCCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCC--HHHHHHHHHHHHHCCCCCCHHH
Q 036275          146 TYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKL--YRRCLEIFEEMIDAGCYPDGGT  216 (271)
Q Consensus       146 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~--~~~a~~~~~~m~~~~~~p~~~~  216 (271)
                      ....++.-|...|+.++|.+.++++...... .......+..++-+.++  .+.+..++..+...|+-+....
T Consensus         9 ki~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~-~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is~~q~   80 (129)
T 2nsz_A            9 EIDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQM   80 (129)
T ss_dssp             HHHHHHHHHHHHCCHHHHHHHHHHHTCGGGH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHH
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHhCCCccH-HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHHHH
Confidence            4566778888888888888888887532111 12233333344443322  3556777777776665544433

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	271
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	99.65
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	99.63
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.62
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.45
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	99.3
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	99.3
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.28
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	99.16
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	99.12
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.11
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	98.93
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	98.89
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	98.87
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	98.85
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	98.8
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	98.8
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	98.74
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	98.69
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	98.67
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	98.65
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	98.65
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	98.64
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	98.62
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	98.5
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	98.46
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	98.42
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	98.42
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	98.4
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	98.24
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	98.16
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	98.16
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	98.14
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	98.14
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	98.13
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	98.05
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	98.02
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	98.0
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	97.98
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	97.98
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	97.97
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	97.96
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	97.92
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	97.8
d1b89a_	336	Clathrin heavy chain proximal leg segment {Cow (Bo	97.75
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	97.66
d1b89a_	336	Clathrin heavy chain proximal leg segment {Cow (Bo	97.64
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	97.62
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	97.47
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	97.34
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	97.32
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	97.29
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	97.28
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	96.98
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	96.89
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	96.85
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	96.77
d1wy6a1	161	Hypothetical protein ST1625 {Archaeon Sulfolobus t	95.77
d1wy6a1	161	Hypothetical protein ST1625 {Archaeon Sulfolobus t	95.39
d1v54e_	105	Cytochrome c oxidase subunit E {Cow (Bos taurus) [	94.32
d1v54e_	105	Cytochrome c oxidase subunit E {Cow (Bos taurus) [	93.43
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	91.28
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	88.38
d2nsza1	129	Programmed cell death 4, PDCD4 {Mouse (Mus musculu	83.26

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.65  E-value=8.4e-14  Score=112.66  Aligned_cols=212  Identities=9%  Similarity=-0.004  Sum_probs=166.1

Q ss_pred             chHHHHHH--hcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 036275           44 PNLFVFIF--SIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGR  121 (271)
Q Consensus        44 y~~ll~~~--~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~  121 (271)
                      +..+...+  .|++++|...+.+..+.. |-+...|..+...+...|++++|+..+++....+ +.+...+..+...+.+
T Consensus       172 ~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~  249 (388)
T d1w3ba_         172 WSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVHGNLACVYYE  249 (388)
T ss_dssp             HHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred             HHhhcccccccCcHHHHHHHHHHHHHhC-cccHHHHHHHhhhhhccccHHHHHHHHHHhHHHh-hhHHHHHHHHHHHHHH
Confidence            33444444  889999999998887765 5577888888899999999999999998888765 3366777788888889


Q ss_pred             cCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 036275          122 LGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEI  201 (271)
Q Consensus       122 ~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~  201 (271)
                      .|++++|...|++..+.. +.+..++..+...+...|++++|.+.++...... +.+...+..+...+...|++++|...
T Consensus       250 ~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~  327 (388)
T d1w3ba_         250 QGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIKREQGNIEEAVRL  327 (388)
T ss_dssp             TTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccC-CccchhhhHHHHHHHHCCCHHHHHHH
Confidence            999999999999888763 4457788888999999999999999998877652 44677888888889999999999999


Q ss_pred             HHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhcccchhHH---HHHHHhhccc
Q 036275          202 FEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKDMKTALPI---YFNLYGEKGV  260 (271)
Q Consensus       202 ~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~---~~~~~~~~G~  260 (271)
                      +++..+.. +-+..++..+..++...|++++|...+++..+..+.....   +-.+|.+.|+
T Consensus       328 ~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~lg~~~~~~~D  388 (388)
T d1w3ba_         328 YRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD  388 (388)
T ss_dssp             HHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred             HHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence            99887753 3356778888888999999999999999888766554433   3445665553

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.63  E-value=4.7e-13  Score=108.18  Aligned_cols=221  Identities=10%  Similarity=0.025  Sum_probs=129.1

Q ss_pred             chHHHHHH--hcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCC----------------
Q 036275           44 PNLFVFIF--SIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGL----------------  105 (271)
Q Consensus        44 y~~ll~~~--~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~----------------  105 (271)
                      +..+...|  .|++++|.+.|++..+.+ |-+..+|..+..++.+.|++++|+..+....+...                
T Consensus        36 ~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~  114 (388)
T d1w3ba_          36 LLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAA  114 (388)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHhhhhcccccccccccccccccccccccccccccccccc
Confidence            44455555  788888888888777665 45667777777777777777777776655443210                


Q ss_pred             --------------------------------------------------------------------------------
Q 036275          106 --------------------------------------------------------------------------------  105 (271)
Q Consensus       106 --------------------------------------------------------------------------------  105 (271)
                                                                                                      
T Consensus       115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~  194 (388)
T d1w3ba_         115 GDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEK  194 (388)
T ss_dssp             SCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred             ccccccccccccccccccccccccccccccccccchhhhhHHHHHHhhccCcchhHHHHhhcccccccCcHHHHHHHHHH
Confidence                                                                                            


Q ss_pred             -----CCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHhchhCCCCCCHH
Q 036275          106 -----KPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVV  180 (271)
Q Consensus       106 -----~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~  180 (271)
                           +-+...+..+...+...|++++|...++...... +.+...+..+...+.+.|++++|.+.|++..+.. +-+..
T Consensus       195 al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~  272 (388)
T d1w3ba_         195 AVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPD  272 (388)
T ss_dssp             HHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHH
T ss_pred             HHHhCcccHHHHHHHhhhhhccccHHHHHHHHHHhHHHh-hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHH
Confidence                 0122233344444444455555555554444432 2334455555556666666666666666555432 12345


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhcccchhHH---HHHHHhh
Q 036275          181 TWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKDMKTALPI---YFNLYGE  257 (271)
Q Consensus       181 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~---~~~~~~~  257 (271)
                      ++..+...+...|++++|.+.++...... +.+...+..+...+...|++++|...+++..+..+.....   +-.+|.+
T Consensus       273 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~  351 (388)
T d1w3ba_         273 AYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQ  351 (388)
T ss_dssp             HHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHhhhccC-CccchhhhHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            56666666666666666666666655542 4455666666666777777777777777766554443332   3455777


Q ss_pred             ccccccchhhh
Q 036275          258 KGVARSNLGQY  268 (271)
Q Consensus       258 ~G~~~~a~~~~  268 (271)
                      .|+.++|++.|
T Consensus       352 ~g~~~~A~~~~  362 (388)
T d1w3ba_         352 QGKLQEALMHY  362 (388)
T ss_dssp             TTCCHHHHHHH
T ss_pred             cCCHHHHHHHH
Confidence            77777776655

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.62  E-value=9.3e-14  Score=110.61  Aligned_cols=220  Identities=9%  Similarity=-0.009  Sum_probs=159.7

Q ss_pred             chHHHHHH-hcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc
Q 036275           44 PNLFVFIF-SIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRL  122 (271)
Q Consensus        44 y~~ll~~~-~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~  122 (271)
                      |+.-+..+ .|++++|++.|+++.+.+ |-+..+|..+..++...|++++|...|++..+... -+...+..+...+...
T Consensus        23 ~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~  100 (323)
T d1fcha_          23 FEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELKP-DNQTALMALAVSFTNE  100 (323)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHhhhcccc-cccccccccccccccc
Confidence            44445555 999999999999999876 56788999999999999999999999999888643 3667888899999999


Q ss_pred             CCHhHHHHHHHHHHhCCCCCCh-h---------------hHHHHHHHHHcCCCHHHHHHHHHhchhCC-CCCCHHHHHHH
Q 036275          123 GQFEKMEEVLTAMEKGSYAADI-S---------------TYNILINIYGRGGFIEKMEGLFQSLPAKR-LKPDVVTWTSR  185 (271)
Q Consensus       123 g~~~~a~~~~~~m~~~~~~~~~-~---------------~~~~li~~~~~~g~~~~a~~~~~~m~~~g-~~~~~~~~~~l  185 (271)
                      |++++|.+.++......  |+. .               .....+..+...+.+.+|.+.|.+..... -.++..++..+
T Consensus       101 ~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~~~~~~l  178 (323)
T d1fcha_         101 SLQRQACEILRDWLRYT--PAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGL  178 (323)
T ss_dssp             TCHHHHHHHHHHHHHTS--TTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHH
T ss_pred             ccccccccchhhHHHhc--cchHHHHHhhhhhhhhcccccchhhHHHHHHhhHHHHHHHHHHHHHHHhhcccccccchhh
Confidence            99999999999887642  211 0               01111223334455677777777665432 12345677777


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhcccchh---HHHHHHHhhccccc
Q 036275          186 LAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKDMKTAL---PIYFNLYGEKGVAR  262 (271)
Q Consensus       186 i~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~~~~~G~~~  262 (271)
                      ...+...|++++|...+++..... +-+..++..+..++...|++++|.+.+++..+..+...   ..+-.+|.+.|+.+
T Consensus       179 ~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~  257 (323)
T d1fcha_         179 GVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHR  257 (323)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHH
T ss_pred             HHHHHHHHHHhhhhcccccccccc-cccccchhhhhhcccccccchhHHHHHHHHHHHhhccHHHHHHHHHHHHHCCCHH
Confidence            778888888888888888877643 33566777777788888888888888888776544433   33455688888888


Q ss_pred             cchhhh
Q 036275          263 SNLGQY  268 (271)
Q Consensus       263 ~a~~~~  268 (271)
                      +|++.|
T Consensus       258 ~A~~~~  263 (323)
T d1fcha_         258 EAVEHF  263 (323)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            887766

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.45  E-value=1.7e-11  Score=97.20  Aligned_cols=208  Identities=10%  Similarity=-0.001  Sum_probs=160.9

Q ss_pred             HHHHHHHhhcC-------chHHHHHH--hcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 036275           33 MLINFLLLQHT-------PNLFVFIF--SIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKS  103 (271)
Q Consensus        33 ~~~~f~~~~~~-------y~~ll~~~--~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~  103 (271)
                      |...|+.....       |..+..+|  .|++++|...|.+..+.. |-+...|..+...+...|++++|.+.+++....
T Consensus        38 A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~  116 (323)
T d1fcha_          38 AVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRY  116 (323)
T ss_dssp             HHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccc-cccccccccccccccccccccccccchhhHHHh
Confidence            55555554432       66677777  999999999999998875 557889999999999999999999999998765


Q ss_pred             CCCC--------------CHHHHHHHHHHHHccCCHhHHHHHHHHHHhCC-CCCChhhHHHHHHHHHcCCCHHHHHHHHH
Q 036275          104 GLKP--------------DTFVINSMLNLYGRLGQFEKMEEVLTAMEKGS-YAADISTYNILINIYGRGGFIEKMEGLFQ  168 (271)
Q Consensus       104 ~~~~--------------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~-~~~~~~~~~~li~~~~~~g~~~~a~~~~~  168 (271)
                      ....              +.......+..+...+..+++.+.+.+..+.. -..+..++..+...+...|++++|...|+
T Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~  196 (323)
T d1fcha_         117 TPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFT  196 (323)
T ss_dssp             STTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             ccchHHHHHhhhhhhhhcccccchhhHHHHHHhhHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHhhhhcccc
Confidence            3110              01111122333445567788888888776542 23456788889999999999999999999


Q ss_pred             hchhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhc
Q 036275          169 SLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKD  243 (271)
Q Consensus       169 ~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~  243 (271)
                      +..... +-+..+|..+...+...|++++|.+.+++..+.. +-+..++..+..+|.+.|++++|.+.|++..+-
T Consensus       197 ~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l  269 (323)
T d1fcha_         197 AALSVR-PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALNM  269 (323)
T ss_dssp             HHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             cccccc-cccccchhhhhhcccccccchhHHHHHHHHHHHh-hccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence            987653 2257789999999999999999999999988753 335778889999999999999999999998653

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.30  E-value=5.4e-10  Score=88.10  Aligned_cols=191  Identities=10%  Similarity=0.041  Sum_probs=149.4

Q ss_pred             HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHH
Q 036275           55 FSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTA  134 (271)
Q Consensus        55 ~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~  134 (271)
                      .++|..+|++..+...+.+...|...+....+.|+++.|..+|+++.+.........|...+..+.+.|+.+.|.++|+.
T Consensus        80 ~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~  159 (308)
T d2onda1          80 SDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKK  159 (308)
T ss_dssp             HHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence            57888899988876556677788888888889999999999999988765443455788889999999999999999999


Q ss_pred             HHhCCCCCChhhHHHHHHH-HHcCCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCC
Q 036275          135 MEKGSYAADISTYNILINI-YGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAG-CYP  212 (271)
Q Consensus       135 m~~~~~~~~~~~~~~li~~-~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~-~~p  212 (271)
                      ..+.+ +.+...|...... +...|+.+.|..+|+.+... .+.+...|...+......|+.+.|..+|++..... ..|
T Consensus       160 al~~~-~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~-~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~~  237 (308)
T d2onda1         160 AREDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKK-YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPP  237 (308)
T ss_dssp             HHTST-TCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCG
T ss_pred             HHHhC-CCcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh-hhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCh
Confidence            88874 3444455444443 44568899999999998875 23457789999999999999999999999987743 333


Q ss_pred             C--HHHHHHHHHHHhccCcHHHHHHHHHHHHhcccch
Q 036275          213 D--GGTAKVLISACSSEDQIEQVTTLVRTMHKDMKTA  247 (271)
Q Consensus       213 ~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~  247 (271)
                      +  ...|...+..-...|+.+.+..+++++.+..+..
T Consensus       238 ~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~~~~~  274 (308)
T d2onda1         238 EKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREE  274 (308)
T ss_dssp             GGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTT
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCccc
Confidence            3  4578888887788899999999999888766544

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.30  E-value=6.7e-10  Score=87.53  Aligned_cols=178  Identities=11%  Similarity=0.024  Sum_probs=120.8

Q ss_pred             CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHH
Q 036275           88 GNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLF  167 (271)
Q Consensus        88 ~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~  167 (271)
                      +..++|..+|++..+...+.+...|...+....+.|+.+.|..+|+.+.+........+|...+....+.|+.+.|.++|
T Consensus        78 ~~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~  157 (308)
T d2onda1          78 LFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIF  157 (308)
T ss_dssp             HHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred             cchHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHH
Confidence            44577788888877665455666777778888888888888888888877532222446788888888888888888888


Q ss_pred             HhchhCCCCCCHHHHHHHHH-HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhcccc
Q 036275          168 QSLPAKRLKPDVVTWTSRLA-AYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKDMKT  246 (271)
Q Consensus       168 ~~m~~~g~~~~~~~~~~li~-~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~  246 (271)
                      +++.+.+.. +...|..... -+...|+.+.|..+|+.+... .+.+...+...++.+...|+++.|+.+|++..+..+.
T Consensus       158 ~~al~~~~~-~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~-~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~  235 (308)
T d2onda1         158 KKAREDART-RHHVYVTAALMEYYCSKDKSVAFKIFELGLKK-YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSL  235 (308)
T ss_dssp             HHHHTSTTC-CTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSS
T ss_pred             HHHHHhCCC-cHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh-hhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Confidence            887766422 3333433332 234467888888888888775 2445677888888888888888888888887665432


Q ss_pred             -------hhHHHHHHHhhccccccchhh
Q 036275          247 -------ALPIYFNLYGEKGVARSNLGQ  267 (271)
Q Consensus       247 -------~~~~~~~~~~~~G~~~~a~~~  267 (271)
                             .+..++..-...|+.+.+.+.
T Consensus       236 ~~~~~~~iw~~~~~fE~~~G~~~~~~~~  263 (308)
T d2onda1         236 PPEKSGEIWARFLAFESNIGDLASILKV  263 (308)
T ss_dssp             CGGGCHHHHHHHHHHHHHHSCHHHHHHH
T ss_pred             ChHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence                   123333333556766665544

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.28  E-value=7.2e-10  Score=87.68  Aligned_cols=194  Identities=10%  Similarity=0.043  Sum_probs=156.8

Q ss_pred             chHHHHHH--hcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC-ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 036275           44 PNLFVFIF--SIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTG-NVAKCEGVINQMHKSGLKPDTFVINSMLNLYG  120 (271)
Q Consensus        44 y~~ll~~~--~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~-~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~  120 (271)
                      |+.+-..+  .+.+++|+++++++.+.+ |-+...|+....++...| ++++|+..+++..+.... +..+|..+...+.
T Consensus        46 ~~~~~~~~~~~e~~~~Al~~~~~ai~ln-P~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~-~~~a~~~~~~~~~  123 (315)
T d2h6fa1          46 YDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK-NYQVWHHRRVLVE  123 (315)
T ss_dssp             HHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCchHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHh-hhhHHHHHhHHHH
Confidence            55555556  889999999999999987 668889999999988876 589999999999887533 7788999999999


Q ss_pred             ccCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCC------
Q 036275          121 RLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKL------  194 (271)
Q Consensus       121 ~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~------  194 (271)
                      +.|++++|++.++.+.+.. +.+...|..+...+...|++++|.+.++.+.+... -+...|+.+...+.+.+.      
T Consensus       124 ~l~~~~eAl~~~~kal~~d-p~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p-~n~~a~~~r~~~l~~~~~~~~~~~  201 (315)
T d2h6fa1         124 WLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDV-RNNSVWNQRYFVISNTTGYNDRAV  201 (315)
T ss_dssp             HHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCSCSHHH
T ss_pred             hhccHHHHHHHHhhhhhhh-hcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCC-ccHHHHHHHHHHHHHccccchhhh
Confidence            9999999999999999863 56789999999999999999999999999988642 256788887777666554      


Q ss_pred             HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhc
Q 036275          195 YRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKD  243 (271)
Q Consensus       195 ~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~  243 (271)
                      +++|...+....+.. +-+...|..+...+...| .+++.+.++...+.
T Consensus       202 ~~~ai~~~~~al~~~-P~~~~~~~~l~~ll~~~~-~~~~~~~~~~~~~l  248 (315)
T d2h6fa1         202 LEREVQYTLEMIKLV-PHNESAWNYLKGILQDRG-LSKYPNLLNQLLDL  248 (315)
T ss_dssp             HHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTTTC-GGGCHHHHHHHHHH
T ss_pred             hHHhHHHHHHHHHhC-CCchHHHHHHHHHHHhcC-hHHHHHHHHHHHHh
Confidence            678888888888764 446777777766665544 56677777766543

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=99.16  E-value=1.1e-09  Score=83.70  Aligned_cols=197  Identities=11%  Similarity=-0.052  Sum_probs=124.1

Q ss_pred             chHHHHHH--hcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 036275           44 PNLFVFIF--SIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGR  121 (271)
Q Consensus        44 y~~ll~~~--~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~  121 (271)
                      |..+-..|  .|++++|++.|++..+.. |-++.+|..+..++.+.|++++|+..|++..+.... +..++..+..++..
T Consensus        40 ~~~~G~~y~~~g~~~~A~~~~~~al~l~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~  117 (259)
T d1xnfa_          40 LYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPT-YNYAHLNRGIALYY  117 (259)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHhhccC-CCCHHHHhhhchHHHHHHHHHHhhhhhhHHHHHHhh-hhhhHHHHHHHHHH
Confidence            33334444  888888888888888775 567888888888888888888888888888876422 45667778888888


Q ss_pred             cCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCC----HHH
Q 036275          122 LGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKL----YRR  197 (271)
Q Consensus       122 ~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~----~~~  197 (271)
                      .|++++|.+.|+...+.. +.+......+...+.+.+..+.+..+..........+  ..++ ++..+.....    .+.
T Consensus       118 ~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-~~~~~~~~~~~~~~~~~  193 (259)
T d1xnfa_         118 GGRDKLAQDDLLAFYQDD-PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQ--WGWN-IVEFYLGNISEQTLMER  193 (259)
T ss_dssp             TTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSCCCS--THHH-HHHHHTTSSCHHHHHHH
T ss_pred             HhhHHHHHHHHHHHHhhc-cccHHHHHHHHHHHHHhhhHHHHHHHHHHhhccchhh--hhhh-HHHHHHHHHHHHHHHHH
Confidence            888888888888887753 3344444445555555565555555555544432111  1121 2222222111    222


Q ss_pred             HHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHHHhcccchh
Q 036275          198 CLEIFEEMIDAGCYPD-GGTAKVLISACSSEDQIEQVTTLVRTMHKDMKTAL  248 (271)
Q Consensus       198 a~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~  248 (271)
                      +...+......  .|+ ..+|..+...+...|++++|.+.|++....++...
T Consensus       194 ~~~~~~~~~~~--~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~  243 (259)
T d1xnfa_         194 LKADATDNTSL--AEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNF  243 (259)
T ss_dssp             HHHHCCSHHHH--HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTC
T ss_pred             HHHHHHHhhhc--CcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCH
Confidence            22222211111  122 24566678888899999999999999887766543

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=99.12  E-value=1.2e-09  Score=83.43  Aligned_cols=212  Identities=9%  Similarity=-0.099  Sum_probs=144.4

Q ss_pred             hcCHHHHHHHHHHHHHcCC-CC--CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHhHH
Q 036275           52 SIYFSDAHAVFEEMKRLGI-TP--TMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKM  128 (271)
Q Consensus        52 ~g~~~~A~~~~~~~~~~~~-~~--~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a  128 (271)
                      .++.+.++.-+++...... .+  ...+|..+..+|.+.|++++|+..|++..+... -+..+|..+..++.+.|++++|
T Consensus        12 ~~~~e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p-~~~~a~~~lg~~~~~~g~~~~A   90 (259)
T d1xnfa_          12 TLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRP-DMPEVFNYLGIYLTQAGNFDAA   90 (259)
T ss_dssp             CHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHTTCHHHH
T ss_pred             cHHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCC-CCHHHHhhhchHHHHHHHHHHh
Confidence            4556777777888776531 11  345777888999999999999999999998753 3678899999999999999999


Q ss_pred             HHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 036275          129 EEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDA  208 (271)
Q Consensus       129 ~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~  208 (271)
                      ++.|++..+.. +.+..++..+..+|...|++++|.+.|+...+.. +.+......+..++.+.+..+.+..+.......
T Consensus        91 ~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (259)
T d1xnfa_          91 YEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD-PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKS  168 (259)
T ss_dssp             HHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHS
T ss_pred             hhhhhHHHHHH-hhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhc-cccHHHHHHHHHHHHHhhhHHHHHHHHHHhhcc
Confidence            99999999863 4457789999999999999999999999988763 224444444445555666665565555555543


Q ss_pred             CCCCCHHHHHHHHHHHhc----cCcHHHHHHHHHHHHhccc---chhHHHHHHHhhccccccchhhhh
Q 036275          209 GCYPDGGTAKVLISACSS----EDQIEQVTTLVRTMHKDMK---TALPIYFNLYGEKGVARSNLGQYI  269 (271)
Q Consensus       209 ~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~---~~~~~~~~~~~~~G~~~~a~~~~~  269 (271)
                      .-.+.  .+. ++..+..    .+..+.+...+.......+   ..+..+-..|...|+.++|++.|.
T Consensus       169 ~~~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~  233 (259)
T d1xnfa_         169 DKEQW--GWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFK  233 (259)
T ss_dssp             CCCST--HHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             chhhh--hhh-HHHHHHHHHHHHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence            22222  222 2222222    2223333333332222222   223335567999999999998763

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.11  E-value=7.1e-09  Score=81.83  Aligned_cols=188  Identities=8%  Similarity=0.036  Sum_probs=146.7

Q ss_pred             HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC-CHhHHHHHHHHHHhCCCCCChhhHHHHHH
Q 036275           74 MKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLG-QFEKMEEVLTAMEKGSYAADISTYNILIN  152 (271)
Q Consensus        74 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g-~~~~a~~~~~~m~~~~~~~~~~~~~~li~  152 (271)
                      ...|+.+...+.+.+..++|+++++++++.... +...|+....++...| ++++|+..++...+.. +-+..+|..+..
T Consensus        43 ~~a~~~~~~~~~~~e~~~~Al~~~~~ai~lnP~-~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~-p~~~~a~~~~~~  120 (315)
T d2h6fa1          43 RDVYDYFRAVLQRDERSERAFKLTRDAIELNAA-NYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRV  120 (315)
T ss_dssp             HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCchHHHHHHHHHHHHHCCC-ChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHH-HhhhhHHHHHhH
Confidence            456667777788889999999999999998532 5667888888888876 5899999999998863 557899999999


Q ss_pred             HHHcCCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC----
Q 036275          153 IYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSED----  228 (271)
Q Consensus       153 ~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g----  228 (271)
                      .+.+.|++++|++.++++.+.. +-+...|..+...+...|++++|...++...+.+ +-+...|..+...+.+.+    
T Consensus       121 ~~~~l~~~~eAl~~~~kal~~d-p~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~-p~n~~a~~~r~~~l~~~~~~~~  198 (315)
T d2h6fa1         121 LVEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYND  198 (315)
T ss_dssp             HHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSCS
T ss_pred             HHHhhccHHHHHHHHhhhhhhh-hcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHC-CccHHHHHHHHHHHHHccccch
Confidence            9999999999999999998863 2368899999999999999999999999999864 446777776655544433    


Q ss_pred             --cHHHHHHHHHHHHhcccchhHHH---HHHHhhccccccchh
Q 036275          229 --QIEQVTTLVRTMHKDMKTALPIY---FNLYGEKGVARSNLG  266 (271)
Q Consensus       229 --~~~~a~~~~~~~~~~~~~~~~~~---~~~~~~~G~~~~a~~  266 (271)
                        .+++|.+.+.+..+..+.....+   ..++.+.| ..++.+
T Consensus       199 ~~~~~~ai~~~~~al~~~P~~~~~~~~l~~ll~~~~-~~~~~~  240 (315)
T d2h6fa1         199 RAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRG-LSKYPN  240 (315)
T ss_dssp             HHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTC-GGGCHH
T ss_pred             hhhhHHhHHHHHHHHHhCCCchHHHHHHHHHHHhcC-hHHHHH
Confidence              46889999988887766554433   23344444 344443

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=98.93  E-value=1.1e-07  Score=74.85  Aligned_cols=216  Identities=9%  Similarity=-0.030  Sum_probs=122.5

Q ss_pred             hcCHHHHHHHHHHHHHcCCCCC-----HHHHHHHHHHHHhcCChHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHc
Q 036275           52 SIYFSDAHAVFEEMKRLGITPT-----MKSHMLLLTAYSKTGNVAKCEGVINQMHKS----GLKP-DTFVINSMLNLYGR  121 (271)
Q Consensus        52 ~g~~~~A~~~~~~~~~~~~~~~-----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----~~~~-~~~~~~~li~~~~~  121 (271)
                      .|++++|++++++..+.. +.+     ...+..+..++...|++++|...|++..+.    +..+ ....+..+...+..
T Consensus        25 ~g~~~~A~~~~~~aL~~~-~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~  103 (366)
T d1hz4a_          25 DGNPDEAERLAKLALEEL-PPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFA  103 (366)
T ss_dssp             TTCHHHHHHHHHHHHHTC-CTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHhhC-cCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHH
Confidence            777777777777766543 222     234556666777777777777777665542    1111 11234455556666


Q ss_pred             cCCHhHHHHHHHHHHh----CCCCCC---hhhHHHHHHHHHcCCCHHHHHHHHHhchhCCC-------------------
Q 036275          122 LGQFEKMEEVLTAMEK----GSYAAD---ISTYNILINIYGRGGFIEKMEGLFQSLPAKRL-------------------  175 (271)
Q Consensus       122 ~g~~~~a~~~~~~m~~----~~~~~~---~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~-------------------  175 (271)
                      .|++..+...+.....    .+....   ...+..+...+...|+++.+...+........                   
T Consensus       104 ~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  183 (366)
T d1hz4a_         104 QGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSL  183 (366)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHH
Confidence            6666666666655432    111111   12344455556666666666655554432100                   


Q ss_pred             ----------------------CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC---CCHHHHHHHHHHHhc
Q 036275          176 ----------------------KPD----VVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCY---PDGGTAKVLISACSS  226 (271)
Q Consensus       176 ----------------------~~~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~---p~~~~~~~l~~~~~~  226 (271)
                                            ...    ...+..+...+...|++++|...+.........   .....+..+..++..
T Consensus       184 ~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~  263 (366)
T d1hz4a_         184 ARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQIL  263 (366)
T ss_dssp             HHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHH
T ss_pred             hhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHH
Confidence                                  001    123444455566777788887777765543211   223455667778888


Q ss_pred             cCcHHHHHHHHHHHHhc----ccc-----hhHHHHHHHhhccccccchhhh
Q 036275          227 EDQIEQVTTLVRTMHKD----MKT-----ALPIYFNLYGEKGVARSNLGQY  268 (271)
Q Consensus       227 ~g~~~~a~~~~~~~~~~----~~~-----~~~~~~~~~~~~G~~~~a~~~~  268 (271)
                      .|++++|...+++....    +..     ....+-.+|...|+.++|++.|
T Consensus       264 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l  314 (366)
T d1hz4a_         264 LGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVL  314 (366)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence            89999998888877532    111     1233455688888888888765

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.89  E-value=8.3e-08  Score=69.86  Aligned_cols=125  Identities=11%  Similarity=-0.005  Sum_probs=92.9

Q ss_pred             chHHHHHH-hcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc
Q 036275           44 PNLFVFIF-SIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRL  122 (271)
Q Consensus        44 y~~ll~~~-~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~  122 (271)
                      |+.-+..+ .|+++.|++.|.++    .+|++.+|..+..++...|++++|++.|++..+... -+...|..+..++.+.
T Consensus         9 ~~~g~~~~~~~d~~~Al~~~~~i----~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp-~~~~a~~~~g~~~~~~   83 (192)
T d1hh8a_           9 WNEGVLAADKKDWKGALDAFSAV----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDK-HLAVAYFQRGMLYYQT   83 (192)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHTS----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHCCCHHHHHHHHHhc----CCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhh-hhhhhHHHHHHHHHhh
Confidence            66656666 88999998888754    356788888888889999999999999988888753 3667788888888899


Q ss_pred             CCHhHHHHHHHHHHhCCC--------------CCC-hhhHHHHHHHHHcCCCHHHHHHHHHhchhC
Q 036275          123 GQFEKMEEVLTAMEKGSY--------------AAD-ISTYNILINIYGRGGFIEKMEGLFQSLPAK  173 (271)
Q Consensus       123 g~~~~a~~~~~~m~~~~~--------------~~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~  173 (271)
                      |++++|.+.|++.....-              .++ ..++..+..++.+.|++++|.+.+......
T Consensus        84 g~~~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~  149 (192)
T d1hh8a_          84 EKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM  149 (192)
T ss_dssp             TCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred             ccHHHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence            999999888888764310              001 234455667777778888888777776654

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.87  E-value=4.6e-08  Score=76.08  Aligned_cols=201  Identities=9%  Similarity=0.030  Sum_probs=138.4

Q ss_pred             chHHHHHH--hcCHHHHHHHHHHHHHc----CCC-CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC----CC-CCCHHH
Q 036275           44 PNLFVFIF--SIYFSDAHAVFEEMKRL----GIT-PTMKSHMLLLTAYSKTGNVAKCEGVINQMHKS----GL-KPDTFV  111 (271)
Q Consensus        44 y~~ll~~~--~g~~~~A~~~~~~~~~~----~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----~~-~~~~~~  111 (271)
                      |......|  .|++++|.+.|.+..+.    +-+ ....+|..+..+|.+.|++++|.+.+++..+.    |. .....+
T Consensus        40 y~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~  119 (290)
T d1qqea_          40 CVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANF  119 (290)
T ss_dssp             HHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHH
Confidence            66677778  99999999999988653    211 12467888999999999999999999876543    21 112345


Q ss_pred             HHHHHHHHH-ccCCHhHHHHHHHHHHh----CCCCCC-hhhHHHHHHHHHcCCCHHHHHHHHHhchhCCCC-----CCH-
Q 036275          112 INSMLNLYG-RLGQFEKMEEVLTAMEK----GSYAAD-ISTYNILINIYGRGGFIEKMEGLFQSLPAKRLK-----PDV-  179 (271)
Q Consensus       112 ~~~li~~~~-~~g~~~~a~~~~~~m~~----~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~-----~~~-  179 (271)
                      +..+...|. ..|++++|++.+++..+    .+.++. ..++..+...+...|++++|.+.|+++......     .+. 
T Consensus       120 ~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~  199 (290)
T d1qqea_         120 KFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLK  199 (290)
T ss_dssp             HHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHH
T ss_pred             HHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHH
Confidence            666676664 46999999999987753    222222 456788899999999999999999987654211     111 


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CC---HHHHHHHHHHHhc--cCcHHHHHHHHHHHHhcc
Q 036275          180 VTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCY-PD---GGTAKVLISACSS--EDQIEQVTTLVRTMHKDM  244 (271)
Q Consensus       180 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~-p~---~~~~~~l~~~~~~--~g~~~~a~~~~~~~~~~~  244 (271)
                      ..+...+..+...|+++.|.+.+++..+.... ++   ......++.++..  .+.+++|...|+++.+-+
T Consensus       200 ~~~~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~sre~~~l~~l~~a~~~~d~e~~~eai~~y~~~~~lD  270 (290)
T d1qqea_         200 DYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLD  270 (290)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCC
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcC
Confidence            23445556777899999999999988765311 12   2345566666654  345778888777665543

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.85  E-value=2.9e-09  Score=84.67  Aligned_cols=192  Identities=5%  Similarity=-0.135  Sum_probs=136.2

Q ss_pred             hcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC--hHHHHHHHHHHHHCCCCCCHHHH-HHHHHHHHccCCHhHH
Q 036275           52 SIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGN--VAKCEGVINQMHKSGLKPDTFVI-NSMLNLYGRLGQFEKM  128 (271)
Q Consensus        52 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~--~~~a~~~~~~m~~~~~~~~~~~~-~~li~~~~~~g~~~~a  128 (271)
                      .|.+++|+..++...+.+ |-+...|..+..++...++  +++|+..+++..+... ++...+ ..+...+...+..++|
T Consensus        86 ~~~~~~al~~~~~~l~~~-pk~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~-~~~~~~~~~~~~~~~~~~~~~~A  163 (334)
T d1dcea1          86 AALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADE-RNFHCWDYRRFVAAQAAVAPAEE  163 (334)
T ss_dssp             HHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTCCCHHHH
T ss_pred             HHHHHHHHHHHHHHHHhC-CCcHHHHHHhhHHHHHhccccHHHHHHHHHHHHhhCc-hhhhhhhhHHHHHHHhccccHHH
Confidence            556899999999998876 6688888888888777654  7899999999988743 345554 4455777788999999


Q ss_pred             HHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHhchhC--------------C---------------CCCCH
Q 036275          129 EEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAK--------------R---------------LKPDV  179 (271)
Q Consensus       129 ~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--------------g---------------~~~~~  179 (271)
                      +..++.+.+.. +-+...|+.+..++.+.|++++|...++.....              +               -+++.
T Consensus       164 l~~~~~~i~~~-p~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~a~~~~~~~l~~~~~~~  242 (334)
T d1dcea1         164 LAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPL  242 (334)
T ss_dssp             HHHHHTTTTTT-CCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCS
T ss_pred             HHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCcchh
Confidence            99999988874 557888999999998888876654433332211              0               01112


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhcccch
Q 036275          180 VTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKDMKTA  247 (271)
Q Consensus       180 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~  247 (271)
                      ..+..+...+...++.++|...+.+..... +-+..++..+..++...|+.++|.+.+++..+.+|..
T Consensus       243 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ldP~~  309 (334)
T d1dcea1         243 FRCELSVEKSTVLQSELESCKELQELEPEN-KWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMR  309 (334)
T ss_dssp             SSCCCCHHHHHHHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGG
T ss_pred             hHHHHHHHHHHHHhhHHHHHHHHHHHHhhC-chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCccc
Confidence            223334455566677777777777766543 2345667777888888888888888888887776643

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.80  E-value=2.7e-07  Score=67.09  Aligned_cols=124  Identities=10%  Similarity=0.015  Sum_probs=97.1

Q ss_pred             HHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCH
Q 036275           81 LTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFI  160 (271)
Q Consensus        81 i~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~  160 (271)
                      ...+...|+++.|++.|.++.    +|+..+|..+..++...|++++|++.|++..+.. +.+...|..+..+|.+.|++
T Consensus        12 g~~~~~~~d~~~Al~~~~~i~----~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ld-p~~~~a~~~~g~~~~~~g~~   86 (192)
T d1hh8a_          12 GVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEKY   86 (192)
T ss_dssp             HHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHCCCHHHHHHHHHhcC----CCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHh-hhhhhhHHHHHHHHHhhccH
Confidence            445678899999999987642    5677888889999999999999999999988864 45688899999999999999


Q ss_pred             HHHHHHHHhchhC------------CC--CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 036275          161 EKMEGLFQSLPAK------------RL--KPD-VVTWTSRLAAYSRKKLYRRCLEIFEEMIDAG  209 (271)
Q Consensus       161 ~~a~~~~~~m~~~------------g~--~~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~  209 (271)
                      ++|.+.|++....            |.  .++ ..++..+..++...|++++|.+.+.......
T Consensus        87 ~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~  150 (192)
T d1hh8a_          87 DLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK  150 (192)
T ss_dssp             HHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence            9999998886542            11  111 2456677778888888888888888877653

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.80  E-value=2.4e-07  Score=71.87  Aligned_cols=192  Identities=7%  Similarity=-0.070  Sum_probs=131.0

Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHHccCCHhHHHHHHHHHHhC----CCC-CChhh
Q 036275           77 HMLLLTAYSKTGNVAKCEGVINQMHKS----GLKPD-TFVINSMLNLYGRLGQFEKMEEVLTAMEKG----SYA-ADIST  146 (271)
Q Consensus        77 ~~~li~~~~~~~~~~~a~~~~~~m~~~----~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~-~~~~~  146 (271)
                      |......|...|++++|.+.|.+..+.    +-+++ ..+|..+..+|.+.|++++|.+.++...+.    |.. ....+
T Consensus        40 y~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~  119 (290)
T d1qqea_          40 CVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANF  119 (290)
T ss_dssp             HHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHH
Confidence            334466788999999999999888653    22222 357899999999999999999999876542    211 12456


Q ss_pred             HHHHHHHHH-cCCCHHHHHHHHHhchh----CCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-----CH-
Q 036275          147 YNILINIYG-RGGFIEKMEGLFQSLPA----KRLKPD-VVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYP-----DG-  214 (271)
Q Consensus       147 ~~~li~~~~-~~g~~~~a~~~~~~m~~----~g~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p-----~~-  214 (271)
                      +..+...|. ..|++++|.+.+++...    .+..+. ..++..+...+...|++++|...+++........     .. 
T Consensus       120 ~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~  199 (290)
T d1qqea_         120 KFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLK  199 (290)
T ss_dssp             HHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHH
T ss_pred             HHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHH
Confidence            667777774 46999999999998653    221111 3467888999999999999999999987642111     11 


Q ss_pred             HHHHHHHHHHhccCcHHHHHHHHHHHHhcccch--------hHHHHHHHhh--ccccccchhhh
Q 036275          215 GTAKVLISACSSEDQIEQVTTLVRTMHKDMKTA--------LPIYFNLYGE--KGVARSNLGQY  268 (271)
Q Consensus       215 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~--------~~~~~~~~~~--~G~~~~a~~~~  268 (271)
                      ..+...+..+...|+++.|.+.+++..+..+..        ...++.+|..  .+.+++|+..|
T Consensus       200 ~~~~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~sre~~~l~~l~~a~~~~d~e~~~eai~~y  263 (290)
T d1qqea_         200 DYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEF  263 (290)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHH
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence            223344556677899999999999987765321        1224445544  34466677655

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.74  E-value=3.4e-07  Score=60.77  Aligned_cols=89  Identities=10%  Similarity=0.006  Sum_probs=42.9

Q ss_pred             HHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHH
Q 036275           82 TAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIE  161 (271)
Q Consensus        82 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~  161 (271)
                      ..+.+.|++++|+..|++.++.. +-+...|..+..++.+.|++++|+..++...+.. +.+...|..+..++...|+++
T Consensus        11 ~~~~~~g~~~eAi~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~g~~~~~~~~~~   88 (117)
T d1elwa_          11 NKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAALEFLNRFE   88 (117)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHhcC-CcchhhhhcccccccccccccccchhhhhHHHhc-cchhhHHHHHHHHHHHccCHH
Confidence            33444455555555555544442 2234444455555555555555555555544432 334444555555555555555


Q ss_pred             HHHHHHHhchh
Q 036275          162 KMEGLFQSLPA  172 (271)
Q Consensus       162 ~a~~~~~~m~~  172 (271)
                      +|+..|++..+
T Consensus        89 ~A~~~~~~a~~   99 (117)
T d1elwa_          89 EAKRTYEEGLK   99 (117)
T ss_dssp             HHHHHHHHHHT
T ss_pred             HHHHHHHHHHH
Confidence            55555555444

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.69  E-value=4.5e-07  Score=60.18  Aligned_cols=90  Identities=12%  Similarity=0.017  Sum_probs=43.6

Q ss_pred             HHHHHccCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCCH
Q 036275          116 LNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLY  195 (271)
Q Consensus       116 i~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~  195 (271)
                      ...+.+.|++++|+..|++..+.. |.+...|..+..+|.+.|++++|++.+....+.+ +.+...|..+..++...|++
T Consensus        10 g~~~~~~g~~~eAi~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~g~~~~~~~~~   87 (117)
T d1elwa_          10 GNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAALEFLNRF   87 (117)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHhcC-CcchhhhhcccccccccccccccchhhhhHHHhc-cchhhHHHHHHHHHHHccCH
Confidence            334444555555555555544432 3334445555555555555555555555544432 22344455555555555555


Q ss_pred             HHHHHHHHHHHH
Q 036275          196 RRCLEIFEEMID  207 (271)
Q Consensus       196 ~~a~~~~~~m~~  207 (271)
                      ++|...|+...+
T Consensus        88 ~~A~~~~~~a~~   99 (117)
T d1elwa_          88 EEAKRTYEEGLK   99 (117)
T ss_dssp             HHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHH
Confidence            555555555444

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.67  E-value=2.4e-07  Score=67.44  Aligned_cols=99  Identities=6%  Similarity=-0.127  Sum_probs=71.2

Q ss_pred             CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChhhHHHHH
Q 036275           72 PTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILI  151 (271)
Q Consensus        72 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li  151 (271)
                      |++..+......+.+.|++++|+..|++..+.. +-+...|..+..+|.+.|++++|+..|+...+.. |-+..+|..+.
T Consensus         2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~-p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~-p~~~~a~~~lg   79 (201)
T d2c2la1           2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLG   79 (201)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhC-CCcHHHHHHHH
Confidence            566667777777777778888888777776664 3356667777777777788888887777777652 33466777777


Q ss_pred             HHHHcCCCHHHHHHHHHhchh
Q 036275          152 NIYGRGGFIEKMEGLFQSLPA  172 (271)
Q Consensus       152 ~~~~~~g~~~~a~~~~~~m~~  172 (271)
                      .+|.+.|++++|...|++..+
T Consensus        80 ~~~~~l~~~~~A~~~~~~al~  100 (201)
T d2c2la1          80 QCQLEMESYDEAIANLQRAYS  100 (201)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHH
Confidence            777778888887777776654

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=98.65  E-value=4.1e-06  Score=65.55  Aligned_cols=122  Identities=7%  Similarity=-0.033  Sum_probs=85.3

Q ss_pred             hHHHHHHHHHcCCCHHHHHHHHHhchhCCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH----CCCCCC-HHHH
Q 036275          146 TYNILINIYGRGGFIEKMEGLFQSLPAKRLKP---DVVTWTSRLAAYSRKKLYRRCLEIFEEMID----AGCYPD-GGTA  217 (271)
Q Consensus       146 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~----~~~~p~-~~~~  217 (271)
                      .+..+...+...|++++|...++.........   ....+..+..++...|++++|...++....    .+..|+ ..++
T Consensus       215 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~  294 (366)
T d1hz4a_         215 ANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNL  294 (366)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHH
Confidence            34556667788899999999998876543222   234567788899999999999999988763    344444 3567


Q ss_pred             HHHHHHHhccCcHHHHHHHHHHHHhc----ccc--------hhHHHHHHHhhccccccchhh
Q 036275          218 KVLISACSSEDQIEQVTTLVRTMHKD----MKT--------ALPIYFNLYGEKGVARSNLGQ  267 (271)
Q Consensus       218 ~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~--------~~~~~~~~~~~~G~~~~a~~~  267 (271)
                      ..+..++...|++++|.+.+++..+-    +..        ....++..+...|..+++...
T Consensus       295 ~~la~~~~~~g~~~~A~~~l~~Al~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~e~e~~  356 (366)
T d1hz4a_         295 LLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVIEGEAMAQQLRQLIQLNTLPELEQH  356 (366)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCCCHHHHTTHHHHHHHHHHHHHTTCSCHHHHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHHhhhcCcHHHHHHHHHHHHHHHHHHHhcCCChHHHHH
Confidence            77888899999999999999986542    211        112234456666777776543

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.65  E-value=1.1e-06  Score=61.62  Aligned_cols=92  Identities=10%  Similarity=-0.062  Sum_probs=55.3

Q ss_pred             HHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCC
Q 036275           80 LLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGF  159 (271)
Q Consensus        80 li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~  159 (271)
                      ..+.|.+.|++++|+..|++..+.. +-+...|..+..+|...|++++|+..|+...+.. +.+..+|..+..++...|+
T Consensus        16 ~gn~~~~~~~y~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~-p~~~~a~~~~g~~~~~~g~   93 (159)
T d1a17a_          16 QANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGK   93 (159)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHcCCHHHHHHHhhhccccc-hhhhhhhhhhHHHHHhccccchHHHHHHHHHHHc-ccchHHHHHHHHHHHHcCC
Confidence            3445556666666666666666554 2245556666666666666666666666666542 3345566666666666666


Q ss_pred             HHHHHHHHHhchhC
Q 036275          160 IEKMEGLFQSLPAK  173 (271)
Q Consensus       160 ~~~a~~~~~~m~~~  173 (271)
                      +++|.+.+++....
T Consensus        94 ~~eA~~~~~~a~~~  107 (159)
T d1a17a_          94 FRAALRDYETVVKV  107 (159)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHc
Confidence            66666666666554

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.64  E-value=5.8e-07  Score=63.07  Aligned_cols=97  Identities=12%  Similarity=-0.034  Sum_probs=84.1

Q ss_pred             hcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHhHHHHH
Q 036275           52 SIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEV  131 (271)
Q Consensus        52 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~  131 (271)
                      .|++++|+..|.+..+.+ |-+...|..+..++...|++++|...|++..+.. +-+...|..+..++...|++++|...
T Consensus        23 ~~~y~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~-p~~~~a~~~~g~~~~~~g~~~eA~~~  100 (159)
T d1a17a_          23 AKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKFRAALRD  100 (159)
T ss_dssp             TTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             cCCHHHHHHHhhhccccc-hhhhhhhhhhHHHHHhccccchHHHHHHHHHHHc-ccchHHHHHHHHHHHHcCCHHHHHHH
Confidence            999999999999999987 6789999999999999999999999999999875 33678899999999999999999999


Q ss_pred             HHHHHhCCCCCChhhHHHHH
Q 036275          132 LTAMEKGSYAADISTYNILI  151 (271)
Q Consensus       132 ~~~m~~~~~~~~~~~~~~li  151 (271)
                      +++..+.. +-+...+..+.
T Consensus       101 ~~~a~~~~-p~~~~~~~~l~  119 (159)
T d1a17a_         101 YETVVKVK-PHDKDAKMKYQ  119 (159)
T ss_dssp             HHHHHHHS-TTCHHHHHHHH
T ss_pred             HHHHHHcC-CCCHHHHHHHH
Confidence            99998863 33455544443

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.62  E-value=5.4e-07  Score=65.47  Aligned_cols=98  Identities=7%  Similarity=-0.103  Sum_probs=87.8

Q ss_pred             CCHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHhchhCCCCC-CHHHHHHH
Q 036275          107 PDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP-DVVTWTSR  185 (271)
Q Consensus       107 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~-~~~~~~~l  185 (271)
                      |+...+......+.+.|++++|+..|++..+.. |.+...|..+..+|.+.|++++|...|++..+.  .| +..+|..+
T Consensus         2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~-p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l--~p~~~~a~~~l   78 (201)
T d2c2la1           2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALEL--DGQSVKAHFFL   78 (201)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--CTTCHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHh--CCCcHHHHHHH
Confidence            677778888999999999999999999988874 567899999999999999999999999999875  45 47789999


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHH
Q 036275          186 LAAYSRKKLYRRCLEIFEEMID  207 (271)
Q Consensus       186 i~~~~~~g~~~~a~~~~~~m~~  207 (271)
                      ..+|...|++++|...|++..+
T Consensus        79 g~~~~~l~~~~~A~~~~~~al~  100 (201)
T d2c2la1          79 GQCQLEMESYDEAIANLQRAYS  100 (201)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHH
Confidence            9999999999999999998765

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.50  E-value=1.5e-07  Score=74.45  Aligned_cols=168  Identities=10%  Similarity=-0.050  Sum_probs=119.5

Q ss_pred             hcCHHHHHHHHHHHHHcCCCCCHHHHHH-HHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHhHH--
Q 036275           52 SIYFSDAHAVFEEMKRLGITPTMKSHML-LLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKM--  128 (271)
Q Consensus        52 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~-li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a--  128 (271)
                      .+++++|...+.++.+.. +++...+.. ....+...+..++|+..+++..+.... +...|+.+...+.+.|+.++|  
T Consensus       122 ~~~~~~a~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~p~-~~~a~~~l~~~~~~~~~~~~A~~  199 (334)
T d1dcea1         122 EPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQPDSGP  199 (334)
T ss_dssp             SCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCC-CHHHHHHHHHHHHHHSCCCCSSS
T ss_pred             cccHHHHHHHHHHHHhhC-chhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhcCHHHHHH
Confidence            567999999999998876 556776654 446777789999999999999888643 677788888888887765543  


Q ss_pred             ----------------------------HHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHhchhCCCCCCHH
Q 036275          129 ----------------------------EEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVV  180 (271)
Q Consensus       129 ----------------------------~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~  180 (271)
                                                  ...+....... +++...+..+...+...|+.++|...+.+..... +-+..
T Consensus       200 ~~~~~~~~~~~~~~~~~~~~~l~~~~~a~~~~~~~l~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-p~~~~  277 (334)
T d1dcea1         200 QGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGR-AEPLFRCELSVEKSTVLQSELESCKELQELEPEN-KWCLL  277 (334)
T ss_dssp             CCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSC-CCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTC-HHHHH
T ss_pred             HHHHhHHhHHHHHHHHHHHHHhcchhHHHHHHHHHHHhC-cchhhHHHHHHHHHHHHhhHHHHHHHHHHHHhhC-chHHH
Confidence                                        22222222221 3334445566677777889999999999877652 11346


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHh
Q 036275          181 TWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDG-GTAKVLISACS  225 (271)
Q Consensus       181 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~-~~~~~l~~~~~  225 (271)
                      ++..+..++...|+.++|.+.++...+.  .|+. .-|..+...+.
T Consensus       278 ~~~~l~~~~~~~~~~~eA~~~~~~ai~l--dP~~~~y~~~L~~~~~  321 (334)
T d1dcea1         278 TIILLMRALDPLLYEKETLQYFSTLKAV--DPMRAAYLDDLRSKFL  321 (334)
T ss_dssp             HHHHHHHHHCTGGGHHHHHHHHHHHHHH--CGGGHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHH--CcccHHHHHHHHHHHh
Confidence            7788888999999999999999999885  4653 44454544443

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=98.46  E-value=1.3e-06  Score=57.44  Aligned_cols=81  Identities=11%  Similarity=-0.032  Sum_probs=44.2

Q ss_pred             hcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHhHHHHH
Q 036275           52 SIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEV  131 (271)
Q Consensus        52 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~  131 (271)
                      .|++++|+..|++..+.+ |-++..|..+..++.+.|++++|+..|++..+.. +-+...+..+...|...|+.++|.+.
T Consensus        29 ~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~la~~y~~~g~~~~A~~~  106 (112)
T d1hxia_          29 LANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNEHNANAALAS  106 (112)
T ss_dssp             TTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HhhhHHHHHHHhhhcccc-cccchhhhhhhhhhhhhhhHHHhhcccccccccc-cccccchHHHHHHHHHCCCHHHHHHH
Confidence            555555555555555543 3345555555555555555555555555555543 22344555555555555555555555


Q ss_pred             HHH
Q 036275          132 LTA  134 (271)
Q Consensus       132 ~~~  134 (271)
                      +++
T Consensus       107 l~~  109 (112)
T d1hxia_         107 LRA  109 (112)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            554

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.42  E-value=2e-06  Score=57.35  Aligned_cols=86  Identities=13%  Similarity=0.085  Sum_probs=45.3

Q ss_pred             hcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC---hHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHccCCHhH
Q 036275           52 SIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGN---VAKCEGVINQMHKSGLKPDT-FVINSMLNLYGRLGQFEK  127 (271)
Q Consensus        52 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~---~~~a~~~~~~m~~~~~~~~~-~~~~~li~~~~~~g~~~~  127 (271)
                      .+++++|.+.|++..+.+ |.++.++..+..++.+.++   .++|+.+++++......|+. .++..+..+|.+.|++++
T Consensus        12 ~~~l~~Ae~~Y~~aL~~~-p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y~~~g~~~~   90 (122)
T d1nzna_          12 VEDLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEK   90 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHhhhHH
Confidence            555666666666655554 4455555555555554333   23455555555544322221 244455555556666666


Q ss_pred             HHHHHHHHHhC
Q 036275          128 MEEVLTAMEKG  138 (271)
Q Consensus       128 a~~~~~~m~~~  138 (271)
                      |++.|+++.+.
T Consensus        91 A~~~~~~aL~~  101 (122)
T d1nzna_          91 ALKYVRGLLQT  101 (122)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHh
Confidence            66666555553

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.42  E-value=1.1e-06  Score=58.57  Aligned_cols=94  Identities=17%  Similarity=0.089  Sum_probs=48.6

Q ss_pred             HHHHHHHccCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCH---HHHHHHHHhchhCCCCCC-HHHHHHHHHHH
Q 036275          114 SMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFI---EKMEGLFQSLPAKRLKPD-VVTWTSRLAAY  189 (271)
Q Consensus       114 ~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~---~~a~~~~~~m~~~g~~~~-~~~~~~li~~~  189 (271)
                      .+++.+...+++++|++.|+.....+ +.+..++..+..++.+.++.   ++|..+++++...+..|+ ..++..+..+|
T Consensus         4 ~l~n~~~~~~~l~~Ae~~Y~~aL~~~-p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y   82 (122)
T d1nzna_           4 AVLNELVSVEDLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGN   82 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHhcCHHHHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHH
Confidence            34555555555666666665555543 34455555555555544433   345555555554322222 12455555555


Q ss_pred             HhcCCHHHHHHHHHHHHHC
Q 036275          190 SRKKLYRRCLEIFEEMIDA  208 (271)
Q Consensus       190 ~~~g~~~~a~~~~~~m~~~  208 (271)
                      .+.|++++|.+.|++.++.
T Consensus        83 ~~~g~~~~A~~~~~~aL~~  101 (122)
T d1nzna_          83 YRLKEYEKALKYVRGLLQT  101 (122)
T ss_dssp             HHTTCHHHHHHHHHHHHHH
T ss_pred             HHHhhhHHHHHHHHHHHHh
Confidence            5666666666666655553

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=98.40  E-value=1.5e-06  Score=57.00  Aligned_cols=86  Identities=6%  Similarity=-0.069  Sum_probs=43.3

Q ss_pred             HHHHccCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCCHH
Q 036275          117 NLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYR  196 (271)
Q Consensus       117 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~  196 (271)
                      ..+.+.|++++|+..|++..+.. |-+..+|..+..++.+.|++++|+..|++..+.. +-+...|..+...|...|+++
T Consensus        24 ~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~la~~y~~~g~~~  101 (112)
T d1hxia_          24 LSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNEHNAN  101 (112)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhhhHHHHHHHhhhcccc-cccchhhhhhhhhhhhhhhHHHhhcccccccccc-cccccchHHHHHHHHHCCCHH
Confidence            34445555555555555554442 2234555555555555555555555555544432 113445555555555555555


Q ss_pred             HHHHHHHH
Q 036275          197 RCLEIFEE  204 (271)
Q Consensus       197 ~a~~~~~~  204 (271)
                      +|.+.+++
T Consensus       102 ~A~~~l~~  109 (112)
T d1hxia_         102 AALASLRA  109 (112)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            55555544

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.24  E-value=3.8e-05  Score=54.08  Aligned_cols=60  Identities=7%  Similarity=-0.152  Sum_probs=27.1

Q ss_pred             HHHHHHHHHcCCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 036275          147 YNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMID  207 (271)
Q Consensus       147 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  207 (271)
                      |+.+..+|.+.|++++|+..++...... +-++.+|..+..+|...|++++|...|+...+
T Consensus        65 ~~nla~~y~k~~~~~~A~~~~~~al~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~  124 (170)
T d1p5qa1          65 HLNLAMCHLKLQAFSAAIESCNKALELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQ  124 (170)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhhhcccccchhhhhhhcc-ccchhhhHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence            3334444444444444444444444331 11344444444444444444444444444444

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.16  E-value=6.4e-05  Score=52.88  Aligned_cols=112  Identities=11%  Similarity=-0.118  Sum_probs=84.1

Q ss_pred             HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCC-CCC-------------HHHHHHHHHHHHccCCHhHHHHHHHHHHhCC
Q 036275           74 MKSHMLLLTAYSKTGNVAKCEGVINQMHKSGL-KPD-------------TFVINSMLNLYGRLGQFEKMEEVLTAMEKGS  139 (271)
Q Consensus        74 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~-~~~-------------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~  139 (271)
                      ...+......+.+.|++++|+..|.+.++.-. .+.             ..+|+.+..+|.+.|++++|+..++...+..
T Consensus        13 a~~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~~~~A~~~~~~al~~~   92 (170)
T d1p5qa1          13 STIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELD   92 (170)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHHhhhhcccccchhhhhhhcc
Confidence            44566677788899999999999988876421 111             2456677888889999999999999888864


Q ss_pred             CCCChhhHHHHHHHHHcCCCHHHHHHHHHhchhCCCCC-CHHHHHHHHHH
Q 036275          140 YAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKP-DVVTWTSRLAA  188 (271)
Q Consensus       140 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~-~~~~~~~li~~  188 (271)
                       |.++.++..+..+|...|++++|...|++..+.  .| +......+-..
T Consensus        93 -p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l--~P~n~~~~~~l~~~  139 (170)
T d1p5qa1          93 -SNNEKGLSRRGEAHLAVNDFELARADFQKVLQL--YPNNKAAKTQLAVC  139 (170)
T ss_dssp             -TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSSCHHHHHHHHHH
T ss_pred             -ccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHH
Confidence             457888999999999999999999999998875  34 44444444333

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.16  E-value=1.4e-05  Score=53.56  Aligned_cols=55  Identities=11%  Similarity=0.050  Sum_probs=23.6

Q ss_pred             HHHHHHccCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHhc
Q 036275          115 MLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSL  170 (271)
Q Consensus       115 li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m  170 (271)
                      +...+...|++++|++.|.+..+.. +.+..++..+..+|.+.|++++|.+.++++
T Consensus        10 ~G~~~~~~~~y~~Ai~~y~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a   64 (128)
T d1elra_          10 LGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKA   64 (128)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHhHHHHHHHcCchHHHHHHHHHH
Confidence            3334444444444444444444432 223444444444444444444444444443

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=98.14  E-value=5.8e-05  Score=52.09  Aligned_cols=62  Identities=11%  Similarity=-0.085  Sum_probs=36.3

Q ss_pred             hHHHHHHHHHcCCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 036275          146 TYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDA  208 (271)
Q Consensus       146 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~  208 (271)
                      +|+.+..+|.+.|++++|++.+++..+.. +.+..+|..+..++...|++++|...|+..++.
T Consensus        69 ~~~Nla~~~~~l~~~~~Al~~~~~al~~~-p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l  130 (153)
T d2fbna1          69 CNLNLATCYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASL  130 (153)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHhhHHHHHHHhcccchhhhhhhcccccc-chhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHh
Confidence            45555666666666666666666655442 224556666666666666666666666665554

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.14  E-value=3.4e-05  Score=54.88  Aligned_cols=59  Identities=12%  Similarity=0.085  Sum_probs=28.6

Q ss_pred             hHHHHHHHHHcCCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 036275          146 TYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEM  205 (271)
Q Consensus       146 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m  205 (271)
                      .+..+...+.+.|++++|...++++.... +-+...|..++.++...|+.++|.+.|+++
T Consensus        69 a~~~la~~~~~~g~~~~Al~~~~~al~~~-P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~  127 (179)
T d2ff4a2          69 AHTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRV  127 (179)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCchHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence            34444555555555555555555544431 223444555555555555555555555443

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.13  E-value=2.8e-05  Score=52.05  Aligned_cols=94  Identities=12%  Similarity=0.068  Sum_probs=59.4

Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCC-------hhhHHH
Q 036275           77 HMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAAD-------ISTYNI  149 (271)
Q Consensus        77 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~-------~~~~~~  149 (271)
                      +..+...+.+.|++++|+..|.+.++.+. .+...+..+..+|.+.|++++|++.++++.+.. +.+       ..+|..
T Consensus         7 ~k~~G~~~~~~~~y~~Ai~~y~~al~~~p-~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~-~~~~~~~~~~a~~~~~   84 (128)
T d1elra_           7 EKELGNDAYKKKDFDTALKHYDKAKELDP-TNMTYITNQAAVYFEKGDYNKCRELCEKAIEVG-RENREDYRQIAKAYAR   84 (128)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-HHSTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCc-ccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhC-cccHHHHHHHHHHHHH
Confidence            44556667777777777777777776642 256667777777777777777777777765421 001       134555


Q ss_pred             HHHHHHcCCCHHHHHHHHHhchh
Q 036275          150 LINIYGRGGFIEKMEGLFQSLPA  172 (271)
Q Consensus       150 li~~~~~~g~~~~a~~~~~~m~~  172 (271)
                      +...+...+++++|.+.|+....
T Consensus        85 lg~~~~~~~~~~~A~~~~~kal~  107 (128)
T d1elra_          85 IGNSYFKEEKYKDAIHFYNKSLA  107 (128)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHhCCHHHHHHHHHHHHh
Confidence            66666666777777777766544

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.05  E-value=6.8e-05  Score=52.63  Aligned_cols=60  Identities=0%  Similarity=-0.129  Sum_probs=27.7

Q ss_pred             HHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHhchh
Q 036275          112 INSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPA  172 (271)
Q Consensus       112 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  172 (271)
                      +..+..++.+.|++++|+..++...+.. +.+..+|..+..++.+.|++++|.+.|++..+
T Consensus        80 ~~nla~~~~~~~~~~~Ai~~~~~al~~~-p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~  139 (169)
T d1ihga1          80 VLNIGACKLKMSDWQGAVDSCLEALEID-PSNTKALYRRAQGWQGLKEYDQALADLKKAQE  139 (169)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhcccchhhhhhhhhhhhh-hhhhhHHHhHHHHHHHccCHHHHHHHHHHHHH
Confidence            3344444444455555555444444432 22344444444444444444444444444444

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=98.02  E-value=0.0001  Score=51.67  Aligned_cols=61  Identities=11%  Similarity=-0.026  Sum_probs=30.5

Q ss_pred             HHHHHHHHHcCCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 036275          147 YNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDA  208 (271)
Q Consensus       147 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~  208 (271)
                      |+.+..+|.+.|++++|+..++...... +.+..+|..+..++...|++++|...|.+.++.
T Consensus        67 ~~Nla~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l  127 (168)
T d1kt1a1          67 FLNLAMCYLKLREYTKAVECCDKALGLD-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV  127 (168)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS
T ss_pred             HHhHHHHHHHhhhcccchhhhhhhhhcc-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            4444455555555555555555544432 223445555555555555555555555555543

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.00  E-value=8.4e-05  Score=52.12  Aligned_cols=77  Identities=9%  Similarity=-0.038  Sum_probs=56.2

Q ss_pred             ChhhHHHHHHHHHcCCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 036275          143 DISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLI  221 (271)
Q Consensus       143 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~  221 (271)
                      ....+..+..++.+.|++++|+..++++.+.. +-+..+|..+..++...|++++|...|+...+.. +.+......+.
T Consensus        76 ~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~-p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~-p~n~~~~~~l~  152 (169)
T d1ihga1          76 ALSCVLNIGACKLKMSDWQGAVDSCLEALEID-PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELL  152 (169)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred             hHHHHHHHHHHHHhhcccchhhhhhhhhhhhh-hhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence            45566777888888888888888888887753 2356788888888888888888888888888753 23444444443

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=97.98  E-value=4.8e-06  Score=63.31  Aligned_cols=51  Identities=10%  Similarity=0.068  Sum_probs=26.2

Q ss_pred             hcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 036275           52 SIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKS  103 (271)
Q Consensus        52 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~  103 (271)
                      .|++++|++.+++..+.. |-+...+..+...++..|++++|...++...+.
T Consensus         9 ~G~l~eAl~~l~~al~~~-P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l   59 (264)
T d1zbpa1           9 EGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKL   59 (264)
T ss_dssp             TTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence            455555555555555443 344555555555555555555555555555443

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.98  E-value=0.00011  Score=52.10  Aligned_cols=59  Identities=14%  Similarity=-0.029  Sum_probs=29.5

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHH
Q 036275          181 TWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTM  240 (271)
Q Consensus       181 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~  240 (271)
                      .+..+..++...|++++|...++..++.. +-+...|..++.++...|+..+|.+.|+++
T Consensus        69 a~~~la~~~~~~g~~~~Al~~~~~al~~~-P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~  127 (179)
T d2ff4a2          69 AHTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRV  127 (179)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCchHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence            34444555555555555555555554432 334445555555555555555555555544

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=97.97  E-value=0.00012  Score=51.33  Aligned_cols=117  Identities=12%  Similarity=-0.021  Sum_probs=88.0

Q ss_pred             HHHHHHHHHHHHhcCChHHHHHHHHHHHHC---CCCCC-----------HHHHHHHHHHHHccCCHhHHHHHHHHHHhCC
Q 036275           74 MKSHMLLLTAYSKTGNVAKCEGVINQMHKS---GLKPD-----------TFVINSMLNLYGRLGQFEKMEEVLTAMEKGS  139 (271)
Q Consensus        74 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~---~~~~~-----------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~  139 (271)
                      +..+......+.+.|++++|...|++....   ...++           ...|+.+..+|.+.|++++|+..++...+..
T Consensus        15 a~~~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~   94 (168)
T d1kt1a1          15 AAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD   94 (168)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhccchhhhhhcchhHHHHHHhHHHHHHHhhhcccchhhhhhhhhcc
Confidence            566777888899999999999999887642   11111           2345667778899999999999999988863


Q ss_pred             CCCChhhHHHHHHHHHcCCCHHHHHHHHHhchhCCCCCC-HHHHHHHHHHHHhcC
Q 036275          140 YAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPD-VVTWTSRLAAYSRKK  193 (271)
Q Consensus       140 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~-~~~~~~li~~~~~~g  193 (271)
                       +.+..+|..+..++...|++++|.+.|+++...  .|+ ......+-......+
T Consensus        95 -p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l--~P~n~~~~~~l~~~~~~~~  146 (168)
T d1kt1a1          95 -SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV--NPQNKAARLQIFMCQKKAK  146 (168)
T ss_dssp             -TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--CTTCHHHHHHHHHHHHHHH
T ss_pred             -cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHH
Confidence             567889999999999999999999999998876  344 444444444433333

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=97.96  E-value=0.0002  Score=49.23  Aligned_cols=69  Identities=10%  Similarity=0.006  Sum_probs=60.8

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhcccchhH
Q 036275          180 VTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKDMKTALP  249 (271)
Q Consensus       180 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~  249 (271)
                      .+|..+..+|.+.|++++|.+.++..++.. +.+..+|..+..++...|++++|...|++..+-++....
T Consensus        68 ~~~~Nla~~~~~l~~~~~Al~~~~~al~~~-p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~  136 (153)
T d2fbna1          68 SCNLNLATCYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLD  136 (153)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHH
T ss_pred             HHHhhHHHHHHHhcccchhhhhhhcccccc-chhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Confidence            478889999999999999999999998864 557899999999999999999999999999887765443

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=97.92  E-value=2.1e-05  Score=59.66  Aligned_cols=121  Identities=12%  Similarity=0.067  Sum_probs=60.0

Q ss_pred             HhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHH
Q 036275           85 SKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKME  164 (271)
Q Consensus        85 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~  164 (271)
                      .+.|++++|+..+++..+.. +-+...+..+...++..|++++|.+.++...+.. +.+...+..+...+...+..+++.
T Consensus         7 L~~G~l~eAl~~l~~al~~~-P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~-P~~~~~~~~l~~ll~a~~~~~~a~   84 (264)
T d1zbpa1           7 LSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKLF-PEYLPGASQLRHLVKAAQARKDFA   84 (264)
T ss_dssp             TTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-GGGHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHhccccHHHH
Confidence            34566666666666666654 2255666666666666666666666666666542 222344444444433333333322


Q ss_pred             HHHHhchhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 036275          165 GLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMID  207 (271)
Q Consensus       165 ~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  207 (271)
                      .-.......+-.++...+......+...|+.++|...+++..+
T Consensus        85 ~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e  127 (264)
T d1zbpa1          85 QGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEE  127 (264)
T ss_dssp             TSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHh
Confidence            2211111111111222333334445556666666666666554

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.80  E-value=0.00011  Score=50.18  Aligned_cols=69  Identities=6%  Similarity=-0.029  Sum_probs=47.3

Q ss_pred             hcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC----------hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 036275           52 SIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGN----------VAKCEGVINQMHKSGLKPDTFVINSMLNLYGR  121 (271)
Q Consensus        52 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~----------~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~  121 (271)
                      .+.+++|++.|+...+.. |.++.++..+..++...++          +++|+..|++..+.. +-+..+|..+..+|..
T Consensus        10 ~~~fe~A~~~~e~al~~~-P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~-P~~~~a~~~lG~~y~~   87 (145)
T d1zu2a1          10 ILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID-PKKDEAVWCIGNAYTS   87 (145)
T ss_dssp             HHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred             HccHHHHHHHHHHHHhhC-CcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhc-chhhHHHhhHHHHHHH
Confidence            466899999999998887 7788899888888875543          455666666666553 2244555555555544


Q ss_pred             c
Q 036275          122 L  122 (271)
Q Consensus       122 ~  122 (271)
                      .
T Consensus        88 ~   88 (145)
T d1zu2a1          88 F   88 (145)
T ss_dssp             H
T ss_pred             c
Confidence            3

>d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Clathrin heavy chain proximal leg segment
domain: Clathrin heavy chain proximal leg segment
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.75  E-value=0.0051  Score=47.72  Aligned_cols=189  Identities=11%  Similarity=0.088  Sum_probs=114.3

Q ss_pred             hHHHHHHHhhcCchHHHHHH--hcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH
Q 036275           32 FMLINFLLLQHTPNLFVFIF--SIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDT  109 (271)
Q Consensus        32 ~~~~~f~~~~~~y~~ll~~~--~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~  109 (271)
                      .|..++..+.. |..++..+  .++++.|.+++.+.   +   +..+|..+...+.+......+     .+.......++
T Consensus        32 ~A~~lY~~~~d-~~rl~~~~v~l~~~~~avd~~~k~---~---~~~~~k~~~~~l~~~~e~~la-----~i~~~~~~~~~   99 (336)
T d1b89a_          32 AAKLLYNNVSN-FGRLASTLVHLGEYQAAVDGARKA---N---STRTWKEVCFACVDGKEFRLA-----QMCGLHIVVHA   99 (336)
T ss_dssp             THHHHHHHTTC-HHHHHHHHHTTTCHHHHHHHHHHH---T---CHHHHHHHHHHHHHTTCHHHH-----HHTTTTTTTCH
T ss_pred             HHHHHHHhCCC-HHHHHHHHHhhccHHHHHHHHHHc---C---CHHHHHHHHHHHHhCcHHHHH-----HHHHHHhhcCH
Confidence            35555655544 88888887  77888887776533   2   667888888888887765443     33344445566


Q ss_pred             HHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHhchhCCCCCCH----------
Q 036275          110 FVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDV----------  179 (271)
Q Consensus       110 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~----------  179 (271)
                      .....++..|-..|.+++...+++..... -..+...++.++..|++.+. ++..+.+.....   ..|.          
T Consensus       100 d~l~~~v~~ye~~~~~e~Li~~Le~~~~~-~~~~~~~~~~L~~lyak~~~-~kl~e~l~~~s~---~y~~~k~~~~c~~~  174 (336)
T d1b89a_         100 DELEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTELAILYSKFKP-QKMREHLELFWS---RVNIPKVLRAAEQA  174 (336)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHTTS-TTCCHHHHHHHHHHHHTTCH-HHHHHHHHHHST---TSCHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHcC-CccchHHHHHHHHHHHHhCh-HHHHHHHHhccc---cCCHHHHHHHHHHc
Confidence            66778899999999999999999987654 24677788889999988653 344444433211   1121          


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHh
Q 036275          180 VTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHK  242 (271)
Q Consensus       180 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~  242 (271)
                      ..|..++..|.+.|++++|..++-.   +  .++..-...++..+.+..+.+...+++....+
T Consensus       175 ~l~~elv~Ly~~~~~~~~A~~~~i~---~--~~~~~~~~~f~e~~~k~~N~e~~~~~i~~yL~  232 (336)
T d1b89a_         175 HLWAELVFLYDKYEEYDNAIITMMN---H--PTDAWKEGQFKDIITKVANVELYYRAIQFYLE  232 (336)
T ss_dssp             TCHHHHHHHHHHTTCHHHHHHHHHH---S--TTTTCCHHHHHHHHHHCSSTHHHHHHHHHHHH
T ss_pred             CChHHHHHHHHhcCCHHHHHHHHHH---c--chhhhhHHHHHHHHHccCChHHHHHHHHHHHH
Confidence            1245556666666666665544322   1  12222223334445555555555554444433

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=97.66  E-value=0.0055  Score=45.54  Aligned_cols=206  Identities=13%  Similarity=0.019  Sum_probs=132.6

Q ss_pred             HHHH-hcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc-
Q 036275           48 VFIF-SIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSK----TGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGR-  121 (271)
Q Consensus        48 l~~~-~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~-  121 (271)
                      ...+ .+++++|++.|++..+.|   +...+..|...|..    ..+...|...+......+   +......+...+.. 
T Consensus        10 ~~~~~~~d~~~A~~~~~kAa~~g---~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~---~~~a~~~l~~~~~~~   83 (265)
T d1ouva_          10 AKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHLLGNLYYSG   83 (265)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHT
T ss_pred             HHHHHCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccc---ccchhhccccccccc
Confidence            4445 999999999999998877   66777777777776    568899999998888775   33333444444432 


Q ss_pred             ---cCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHH----cCCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHh---
Q 036275          122 ---LGQFEKMEEVLTAMEKGSYAADISTYNILINIYG----RGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSR---  191 (271)
Q Consensus       122 ---~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~----~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~---  191 (271)
                         ..+.+.|...++...+.|.   ......+...+.    .......+...+......   .+...+..|...+..   
T Consensus        84 ~~~~~~~~~a~~~~~~a~~~g~---~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~L~~~~~~~~~  157 (265)
T d1ouva_          84 QGVSQNTNKALQYYSKACDLKY---AEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDL---NDGDGCTILGSLYDAGRG  157 (265)
T ss_dssp             SSSCCCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSS
T ss_pred             cccchhhHHHHHHHhhhhhhhh---hhHHHhhcccccCCCcccchhHHHHHHhhhhhcc---cccchhhhhhhhhccCCC
Confidence               4677889999988888763   222223333333    344566677777766654   366677777777765   


Q ss_pred             -cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc----cCcHHHHHHHHHHHHhcccchhH-HHHHHHhh----cccc
Q 036275          192 -KKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSS----EDQIEQVTTLVRTMHKDMKTALP-IYFNLYGE----KGVA  261 (271)
Q Consensus       192 -~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~~~----~G~~  261 (271)
                       ..+...+...++...+.|   +......+-..+..    ..+.++|..+|++..+.+.+... .+-.+|.+    ..+.
T Consensus       158 ~~~~~~~~~~~~~~a~~~g---~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~g~~~a~~~LG~~y~~G~g~~~n~  234 (265)
T d1ouva_         158 TPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELENGGGCFNLGAMQYNGEGVTRNE  234 (265)
T ss_dssp             SCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSSCCS
T ss_pred             cccccccchhhhhcccccc---ccccccchhhhcccCcccccchhhhhhhHhhhhcccCHHHHHHHHHHHHcCCCCccCH
Confidence             456677777777777665   44455555444443    56888899988888776543322 22233443    2245


Q ss_pred             ccchhhh
Q 036275          262 RSNLGQY  268 (271)
Q Consensus       262 ~~a~~~~  268 (271)
                      .+|++.|
T Consensus       235 ~~A~~~~  241 (265)
T d1ouva_         235 KQAIENF  241 (265)
T ss_dssp             TTHHHHH
T ss_pred             HHHHHHH
Confidence            5566554

>d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Clathrin heavy chain proximal leg segment
domain: Clathrin heavy chain proximal leg segment
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.64  E-value=0.0045  Score=48.03  Aligned_cols=162  Identities=12%  Similarity=0.082  Sum_probs=95.1

Q ss_pred             hcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHhHHHHH
Q 036275           52 SIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEV  131 (271)
Q Consensus        52 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~  131 (271)
                      .|.++.|..+|..+.         -|..++..+.+.++++.|.++..+.      -+..+|..+...+.+......+   
T Consensus        27 ~~lye~A~~lY~~~~---------d~~rl~~~~v~l~~~~~avd~~~k~------~~~~~~k~~~~~l~~~~e~~la---   88 (336)
T d1b89a_          27 EKMYDAAKLLYNNVS---------NFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLA---   88 (336)
T ss_dssp             --CTTTHHHHHHHTT---------CHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHH---
T ss_pred             CCCHHHHHHHHHhCC---------CHHHHHHHHHhhccHHHHHHHHHHc------CCHHHHHHHHHHHHhCcHHHHH---
Confidence            677777777776442         3556777777777777777766543      2555777777777766655433   


Q ss_pred             HHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 036275          132 LTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCY  211 (271)
Q Consensus       132 ~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~  211 (271)
                        .+.......++.....++..|-..|.+++...+++..... -..+...++.++..|++.+ .++..+   .+...+-.
T Consensus        89 --~i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~-~~~~~~~~~~L~~lyak~~-~~kl~e---~l~~~s~~  161 (336)
T d1b89a_          89 --QMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTELAILYSKFK-PQKMRE---HLELFWSR  161 (336)
T ss_dssp             --HHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS-TTCCHHHHHHHHHHHHTTC-HHHHHH---HHHHHSTT
T ss_pred             --HHHHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcC-CccchHHHHHHHHHHHHhC-hHHHHH---HHHhcccc
Confidence              2222333345555567777788888888888877765433 2446667777777777654 333333   33321112


Q ss_pred             CCHHHHHHHHHHHhccCcHHHHHHHHHHHH
Q 036275          212 PDGGTAKVLISACSSEDQIEQVTTLVRTMH  241 (271)
Q Consensus       212 p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~  241 (271)
                      .|.   ..+++.|...+-+.++.-++.++.
T Consensus       162 y~~---~k~~~~c~~~~l~~elv~Ly~~~~  188 (336)
T d1b89a_         162 VNI---PKVLRAAEQAHLWAELVFLYDKYE  188 (336)
T ss_dssp             SCH---HHHHHHHHTTTCHHHHHHHHHHTT
T ss_pred             CCH---HHHHHHHHHcCChHHHHHHHHhcC
Confidence            232   334566666677766666666553

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.62  E-value=0.00013  Score=49.71  Aligned_cols=72  Identities=8%  Similarity=-0.105  Sum_probs=39.9

Q ss_pred             HhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC----------CHhHHHHHHHHHHhCCCCCChhhHHHHHHHH
Q 036275           85 SKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLG----------QFEKMEEVLTAMEKGSYAADISTYNILINIY  154 (271)
Q Consensus        85 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g----------~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~  154 (271)
                      -+.+.+++|...|++..+.. +-+...+..+..++...+          .+++|+..|++..+.. |.+..+|..+..+|
T Consensus         8 ~r~~~fe~A~~~~e~al~~~-P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~-P~~~~a~~~lG~~y   85 (145)
T d1zu2a1           8 DRILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID-PKKDEAVWCIGNAY   85 (145)
T ss_dssp             HHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred             HHHccHHHHHHHHHHHHhhC-CcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhc-chhhHHHhhHHHHH
Confidence            34455677777777776664 335556666666665433          3355566665555542 33455555555555


Q ss_pred             HcCC
Q 036275          155 GRGG  158 (271)
Q Consensus       155 ~~~g  158 (271)
                      ...|
T Consensus        86 ~~~g   89 (145)
T d1zu2a1          86 TSFA   89 (145)
T ss_dssp             HHHH
T ss_pred             HHcc
Confidence            4443

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=97.47  E-value=0.0013  Score=45.13  Aligned_cols=90  Identities=12%  Similarity=0.048  Sum_probs=46.8

Q ss_pred             HHHHhcCChHHHHHHHHHHHHCCC-CC----------CHHHHHHHHHHHHccCCHhHHHHHHHHHHhC-----CCCCC--
Q 036275           82 TAYSKTGNVAKCEGVINQMHKSGL-KP----------DTFVINSMLNLYGRLGQFEKMEEVLTAMEKG-----SYAAD--  143 (271)
Q Consensus        82 ~~~~~~~~~~~a~~~~~~m~~~~~-~~----------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-----~~~~~--  143 (271)
                      ..+...|++++|+..|++..+... .|          ....|+.+..+|.+.|++++|...+++..+.     ...++  
T Consensus        17 ~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~~   96 (156)
T d2hr2a1          17 QRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEG   96 (156)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhccccccccccccc
Confidence            344455666666666666554210 01          1234566666666666666666666655431     01111  


Q ss_pred             ---hhhHHHHHHHHHcCCCHHHHHHHHHhch
Q 036275          144 ---ISTYNILINIYGRGGFIEKMEGLFQSLP  171 (271)
Q Consensus       144 ---~~~~~~li~~~~~~g~~~~a~~~~~~m~  171 (271)
                         ...++.+..+|...|++++|.+.|++..
T Consensus        97 ~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al  127 (156)
T d2hr2a1          97 KLWISAVYSRALALDGLGRGAEAMPEFKKVV  127 (156)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             chhHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence               1234455566666666666666666543

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=97.34  E-value=0.0029  Score=43.22  Aligned_cols=94  Identities=12%  Similarity=0.017  Sum_probs=70.6

Q ss_pred             chHHHHHH----hcCHHHHHHHHHHHHHcC--CCC---------CHHHHHHHHHHHHhcCChHHHHHHHHHHHHC-----
Q 036275           44 PNLFVFIF----SIYFSDAHAVFEEMKRLG--ITP---------TMKSHMLLLTAYSKTGNVAKCEGVINQMHKS-----  103 (271)
Q Consensus        44 y~~ll~~~----~g~~~~A~~~~~~~~~~~--~~~---------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-----  103 (271)
                      |..+-.+.    .|++++|++.|++..+..  .+.         ....|+.+..+|.+.|++++|...+++..+.     
T Consensus        10 ~~~l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~   89 (156)
T d2hr2a1          10 YLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRG   89 (156)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccccc
Confidence            55553333    799999999999997642  111         1467889999999999999999999887642     


Q ss_pred             CCCCC-----HHHHHHHHHHHHccCCHhHHHHHHHHHHh
Q 036275          104 GLKPD-----TFVINSMLNLYGRLGQFEKMEEVLTAMEK  137 (271)
Q Consensus       104 ~~~~~-----~~~~~~li~~~~~~g~~~~a~~~~~~m~~  137 (271)
                      ...++     ...+..+..+|...|++++|+..|++..+
T Consensus        90 ~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~  128 (156)
T d2hr2a1          90 ELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE  128 (156)
T ss_dssp             CTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             cccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            12222     22467788999999999999999998764

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.32  E-value=0.00029  Score=58.31  Aligned_cols=116  Identities=12%  Similarity=-0.060  Sum_probs=66.6

Q ss_pred             CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChhhHHHH
Q 036275           71 TPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNIL  150 (271)
Q Consensus        71 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l  150 (271)
                      +++...+..+...+.+.|+.+.|...+++.....   ....+..+...+...|++++|...|++..+.. |.+...|+.|
T Consensus       117 ~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~---~~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~-P~~~~~~~~L  192 (497)
T d1ya0a1         117 LPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYI---CQHCLVHLGDIARYRNQTSQAESYYRHAAQLV-PSNGQPYNQL  192 (497)
T ss_dssp             --------------------------CCHHHHHH---HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTBSHHHHHH
T ss_pred             hhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCCC---HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCchHHHHHH
Confidence            3455666777777777888888777776554321   12456778888888899999999998888763 4456788899


Q ss_pred             HHHHHcCCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHh
Q 036275          151 INIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSR  191 (271)
Q Consensus       151 i~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~  191 (271)
                      ...+...|+..+|...|.+..... .|-..++..|...+.+
T Consensus       193 g~~~~~~~~~~~A~~~y~ral~~~-~~~~~a~~nL~~~~~~  232 (497)
T d1ya0a1         193 AILASSKGDHLTTIFYYCRSIAVK-FPFPAASTNLQKALSK  232 (497)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHSSS-BCCHHHHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHhCC-CCCHHHHHHHHHHHHH
Confidence            999999999999988888877653 4567777777776654

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.29  E-value=0.0017  Score=40.37  Aligned_cols=66  Identities=12%  Similarity=-0.004  Sum_probs=38.3

Q ss_pred             CHHHHHHHHHHHHhcCChHHHHHHHHHHHHC-----CCCCC-HHHHHHHHHHHHccCCHhHHHHHHHHHHhC
Q 036275           73 TMKSHMLLLTAYSKTGNVAKCEGVINQMHKS-----GLKPD-TFVINSMLNLYGRLGQFEKMEEVLTAMEKG  138 (271)
Q Consensus        73 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-----~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~  138 (271)
                      ++..+..+...+.+.|+++.|...|++..+.     ...++ ..+++.+..++.+.|++++|++.+++..+.
T Consensus         4 saddc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l   75 (95)
T d1tjca_           4 TAEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL   75 (95)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHh
Confidence            3444555666666666666666666655432     11112 345666666666666666666666666654

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.28  E-value=0.00056  Score=56.55  Aligned_cols=165  Identities=10%  Similarity=0.018  Sum_probs=87.6

Q ss_pred             HHHHHHHHHHHHHcCCCCCHHHHHHHHHHH--HhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHhHHHHHH
Q 036275           55 FSDAHAVFEEMKRLGITPTMKSHMLLLTAY--SKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVL  132 (271)
Q Consensus        55 ~~~A~~~~~~~~~~~~~~~~~~~~~li~~~--~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~  132 (271)
                      +..+.+.++...+..-.++..-....+..+  ...+.++.++..+.+..+.. .++...+..+...+.+.|+.++|...+
T Consensus        65 y~~~ie~~r~~~k~~~~~~~~~~~~~~~~~l~~a~~~Y~~ai~~l~~~~~l~-~~~~~~~~~lg~~~~~~~~~~~A~~~~  143 (497)
T d1ya0a1          65 FKNQITTLQGQAKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVD-LPCRVKSSQLGIISNKQTHTSAIVKPQ  143 (497)
T ss_dssp             THHHHHHHHHHHSCSSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTC--------------------------------C
T ss_pred             HHHHHHHHHHhcccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-hhhHHHHHHhHHHHHhCCCHHHHHHHH
Confidence            344555666555443233322222222111  12233444444433332221 234456777888888899999988877


Q ss_pred             HHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHhchhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 036275          133 TAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPD-VVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCY  211 (271)
Q Consensus       133 ~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~  211 (271)
                      .......   ...++..+...+...|++++|...|++..+.  .|+ ...|+.|...+...|+..+|...|.+..... +
T Consensus       144 ~~al~~~---~~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l--~P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~-~  217 (497)
T d1ya0a1         144 SSSCSYI---CQHCLVHLGDIARYRNQTSQAESYYRHAAQL--VPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVK-F  217 (497)
T ss_dssp             CHHHHHH---HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSS-B
T ss_pred             HHHhCCC---HHHHHHHHHHHHHHcccHHHHHHHHHHHHHH--CCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC-C
Confidence            6665431   2456778899999999999999999998876  344 5789999999999999999999999888764 5


Q ss_pred             CCHHHHHHHHHHHhc
Q 036275          212 PDGGTAKVLISACSS  226 (271)
Q Consensus       212 p~~~~~~~l~~~~~~  226 (271)
                      |...++..|...+.+
T Consensus       218 ~~~~a~~nL~~~~~~  232 (497)
T d1ya0a1         218 PFPAASTNLQKALSK  232 (497)
T ss_dssp             CCHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHH
Confidence            677777777766543

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=96.98  E-value=0.02  Score=37.65  Aligned_cols=46  Identities=11%  Similarity=0.015  Sum_probs=21.2

Q ss_pred             CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 036275           54 YFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSG  104 (271)
Q Consensus        54 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~  104 (271)
                      ++++|++.|.+..+.|.+   ..+..|..  ....+.++|+.++++..+.|
T Consensus         8 d~~~A~~~~~kaa~~g~~---~a~~~l~~--~~~~~~~~a~~~~~~aa~~g   53 (133)
T d1klxa_           8 DLKKAIQYYVKACELNEM---FGCLSLVS--NSQINKQKLFQYLSKACELN   53 (133)
T ss_dssp             HHHHHHHHHHHHHHTTCT---THHHHHHT--CTTSCHHHHHHHHHHHHHTT
T ss_pred             CHHHHHHHHHHHHHCCCh---hhhhhhcc--ccccCHHHHHHHHhhhhccc
Confidence            456666666666655521   22222221  12234455555555554443

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=96.89  E-value=0.024  Score=37.19  Aligned_cols=110  Identities=11%  Similarity=-0.038  Sum_probs=54.6

Q ss_pred             ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHc----CCCHHHHH
Q 036275           89 NVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGR----GGFIEKME  164 (271)
Q Consensus        89 ~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~----~g~~~~a~  164 (271)
                      +.++|+.+|++..+.|.. .  ....|.  .....+.++|.+.+++..+.|   ++..+..|...|..    ..+.++|.
T Consensus         8 d~~~A~~~~~kaa~~g~~-~--a~~~l~--~~~~~~~~~a~~~~~~aa~~g---~~~a~~~Lg~~y~~g~~~~~d~~~A~   79 (133)
T d1klxa_           8 DLKKAIQYYVKACELNEM-F--GCLSLV--SNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAA   79 (133)
T ss_dssp             HHHHHHHHHHHHHHTTCT-T--HHHHHH--TCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred             CHHHHHHHHHHHHHCCCh-h--hhhhhc--cccccCHHHHHHHHhhhhccc---chhhhhhHHHhhhhccccchhhHHHH
Confidence            456677777776666522 1  111222  223345666666666666554   33444444444432    33455666


Q ss_pred             HHHHhchhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCC
Q 036275          165 GLFQSLPAKRLKPDVVTWTSRLAAYSR----KKLYRRCLEIFEEMIDAG  209 (271)
Q Consensus       165 ~~~~~m~~~g~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~  209 (271)
                      +.|++..+.|   ++.....|-..|..    ..+.++|.+.|+...+.|
T Consensus        80 ~~~~~aa~~g---~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G  125 (133)
T d1klxa_          80 QYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG  125 (133)
T ss_dssp             HHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred             HHHhhhhccC---cchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCC
Confidence            6666655544   33344444444433    334555555555555444

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.85  E-value=0.0055  Score=37.91  Aligned_cols=66  Identities=9%  Similarity=-0.083  Sum_probs=38.7

Q ss_pred             ChhhHHHHHHHHHcCCCHHHHHHHHHhchhC---CC--CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 036275          143 DISTYNILINIYGRGGFIEKMEGLFQSLPAK---RL--KPD-VVTWTSRLAAYSRKKLYRRCLEIFEEMIDA  208 (271)
Q Consensus       143 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~---g~--~~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~  208 (271)
                      +...+-.+...+.+.|++++|...|++..+.   ..  .++ ..+++.+..++.+.|++++|...+++.++.
T Consensus         4 saddc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l   75 (95)
T d1tjca_           4 TAEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL   75 (95)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHh
Confidence            3444445666666777777777766665432   11  111 345666666666666666666666666654

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=96.77  E-value=0.057  Score=39.69  Aligned_cols=161  Identities=12%  Similarity=0.064  Sum_probs=109.7

Q ss_pred             CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc----cCCHhHHHHHHHHHHhCCCCCChhhHH
Q 036275           73 TMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGR----LGQFEKMEEVLTAMEKGSYAADISTYN  148 (271)
Q Consensus        73 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~~~~~~~~~~  148 (271)
                      |+..+..|...+.+.+++++|++.|++..+.|   +...+..|...|..    ..+...|...+....+.+   +.....
T Consensus         1 ~p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g---~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~---~~~a~~   74 (265)
T d1ouva_           1 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH   74 (265)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccc---ccchhh
Confidence            45677788888889999999999999999886   55566667777765    568899999999988876   344444


Q ss_pred             HHHHHHH----cCCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHH----hcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 036275          149 ILINIYG----RGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYS----RKKLYRRCLEIFEEMIDAGCYPDGGTAKVL  220 (271)
Q Consensus       149 ~li~~~~----~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~----~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l  220 (271)
                      .+...+.    ..++.+.|...++.....|.   ......+...+.    .......+...+......+   +...+..+
T Consensus        75 ~l~~~~~~~~~~~~~~~~a~~~~~~a~~~g~---~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~L  148 (265)
T d1ouva_          75 LLGNLYYSGQGVSQNTNKALQYYSKACDLKY---AEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTIL  148 (265)
T ss_dssp             HHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred             ccccccccccccchhhHHHHHHHhhhhhhhh---hhHHHhhcccccCCCcccchhHHHHHHhhhhhccc---ccchhhhh
Confidence            4544444    35678889999998887753   333333433333    2455667777777766543   45555556


Q ss_pred             HHHHhc----cCcHHHHHHHHHHHHhccc
Q 036275          221 ISACSS----EDQIEQVTTLVRTMHKDMK  245 (271)
Q Consensus       221 ~~~~~~----~g~~~~a~~~~~~~~~~~~  245 (271)
                      ...+..    ..+...+..+++...+.+.
T Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~a~~~g~  177 (265)
T d1ouva_         149 GSLYDAGRGTPKDLKKALASYDKACDLKD  177 (265)
T ss_dssp             HHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred             hhhhccCCCcccccccchhhhhccccccc
Confidence            555553    5666677777777666543

>d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Hypothetical protein ST1625
family: Hypothetical protein ST1625
domain: Hypothetical protein ST1625
species: Archaeon Sulfolobus tokodaii [TaxId: 111955]

Probab=95.77  E-value=0.12  Score=33.32  Aligned_cols=138  Identities=12%  Similarity=0.048  Sum_probs=89.9

Q ss_pred             hcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHhHHHHH
Q 036275           52 SIYFSDAHAVFEEMKRLGITPTMKSHMLLLTAYSKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEV  131 (271)
Q Consensus        52 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~  131 (271)
                      .|.+++-.++..+.....   +..-||-+|--....-+-+-.+++++.+-+.   -|.          ..++++......
T Consensus        15 dG~ve~Gveii~k~~~ss---~~~E~NW~ICNiidt~dC~~v~~~Ld~IG~~---FDl----------s~C~Nlk~vv~C   78 (161)
T d1wy6a1          15 DGYIDEGVKIVLEITKSS---TKSEYNWFICNLLESIDCRYMFQVLDKIGSY---FDL----------DKCQNLKSVVEC   78 (161)
T ss_dssp             TTCHHHHHHHHHHHHHHS---CHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG---SCG----------GGCSCTHHHHHH
T ss_pred             hhhHHhHHHHHHHHcccC---CccccceeeeecccccchHHHHHHHHHHhhh---cCc----------hhhhcHHHHHHH
Confidence            778888888887776643   5566666666666666666666666555432   111          123444444333


Q ss_pred             HHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 036275          132 LTAMEKGSYAADISTYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCY  211 (271)
Q Consensus       132 ~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~  211 (271)
                      +-.+     ..+...++..++....+|+-++-.++...+.+. -+|++...-.+..+|.+.|+..++.+++.+.-+.|+.
T Consensus        79 ~~~~-----n~~se~vdlALd~lv~~~kkd~Ld~i~~~l~kn-~~i~~~~llkia~A~kkig~~re~nell~~ACe~G~K  152 (161)
T d1wy6a1          79 GVIN-----NTLNEHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKKGEK  152 (161)
T ss_dssp             HHHT-----TCCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred             HHHh-----cchHHHHHHHHHHHHHhccHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhHH
Confidence            3222     124455677778888888888888888886653 3677778888888888888888888888888877753

>d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Hypothetical protein ST1625
family: Hypothetical protein ST1625
domain: Hypothetical protein ST1625
species: Archaeon Sulfolobus tokodaii [TaxId: 111955]

Probab=95.39  E-value=0.17  Score=32.58  Aligned_cols=140  Identities=12%  Similarity=-0.017  Sum_probs=91.7

Q ss_pred             HhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHH
Q 036275           85 SKTGNVAKCEGVINQMHKSGLKPDTFVINSMLNLYGRLGQFEKMEEVLTAMEKGSYAADISTYNILINIYGRGGFIEKME  164 (271)
Q Consensus        85 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~  164 (271)
                      .-.|..++..++..+...+   .+..-||-+|--....-+=+-+.++++.+-+.   .|..          .++++....
T Consensus        13 ildG~ve~Gveii~k~~~s---s~~~E~NW~ICNiidt~dC~~v~~~Ld~IG~~---FDls----------~C~Nlk~vv   76 (161)
T d1wy6a1          13 LLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSY---FDLD----------KCQNLKSVV   76 (161)
T ss_dssp             HHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG---SCGG----------GCSCTHHHH
T ss_pred             HHhhhHHhHHHHHHHHccc---CCccccceeeeecccccchHHHHHHHHHHhhh---cCch----------hhhcHHHHH
Confidence            3456666666666666553   24444555555555555555555565555432   1211          223333333


Q ss_pred             HHHHhchhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhcc
Q 036275          165 GLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKDM  244 (271)
Q Consensus       165 ~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~  244 (271)
                      ..+-.+-     .+...++..+.....+|.-+...++++.+.+.+ .|+......+..+|.+.|+..++-+++.+.-+.|
T Consensus        77 ~C~~~~n-----~~se~vdlALd~lv~~~kkd~Ld~i~~~l~kn~-~i~~~~llkia~A~kkig~~re~nell~~ACe~G  150 (161)
T d1wy6a1          77 ECGVINN-----TLNEHVNKALDILVIQGKRDKLEEIGREILKNN-EVSASILVAIANALRRVGDERDATTLLIEACKKG  150 (161)
T ss_dssp             HHHHHTT-----CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--C-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHhc-----chHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHh
Confidence            3332222     144567778888899999999999999988765 8889999999999999999999999999998877


Q ss_pred             cc
Q 036275          245 KT  246 (271)
Q Consensus       245 ~~  246 (271)
                      ..
T Consensus       151 ~K  152 (161)
T d1wy6a1         151 EK  152 (161)
T ss_dssp             CH
T ss_pred             HH
Confidence            54

>d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Cytochrome c oxidase subunit E
family: Cytochrome c oxidase subunit E
domain: Cytochrome c oxidase subunit E
species: Cow (Bos taurus) [TaxId: 9913]

Probab=94.32  E-value=0.28  Score=29.82  Aligned_cols=45  Identities=18%  Similarity=0.216  Sum_probs=21.7

Q ss_pred             HHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 036275          162 KMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLYRRCLEIFEEMI  206 (271)
Q Consensus       162 ~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~  206 (271)
                      ++.+-+..+....+.|++....+.+++|.+.+++..|.++|+..+
T Consensus        24 e~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK   68 (105)
T d1v54e_          24 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVK   68 (105)
T ss_dssp             HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence            344444444444444555555555555555555555555554443

>d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Cytochrome c oxidase subunit E
family: Cytochrome c oxidase subunit E
domain: Cytochrome c oxidase subunit E
species: Cow (Bos taurus) [TaxId: 9913]

Probab=93.43  E-value=0.42  Score=28.99  Aligned_cols=51  Identities=6%  Similarity=0.132  Sum_probs=45.9

Q ss_pred             CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhcc
Q 036275          194 LYRRCLEIFEEMIDAGCYPDGGTAKVLISACSSEDQIEQVTTLVRTMHKDM  244 (271)
Q Consensus       194 ~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~  244 (271)
                      +.-++.+-+..+....+.|+..+..+.+++|.+.+|+..|.++++.+....
T Consensus        21 D~we~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~K~   71 (105)
T d1v54e_          21 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA   71 (105)
T ss_dssp             CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT
T ss_pred             cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh
Confidence            566788888888889999999999999999999999999999999987554

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=91.28  E-value=0.24  Score=31.79  Aligned_cols=67  Identities=10%  Similarity=0.095  Sum_probs=46.2

Q ss_pred             CCCHHHHHHHHHHHHhcC---ChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHccCCHhHHHHHHHHHHhC
Q 036275           71 TPTMKSHMLLLTAYSKTG---NVAKCEGVINQMHKSGLKPD-TFVINSMLNLYGRLGQFEKMEEVLTAMEKG  138 (271)
Q Consensus        71 ~~~~~~~~~li~~~~~~~---~~~~a~~~~~~m~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~  138 (271)
                      .+++.+-....-++.++.   +.++++.+++++.+.+ +.+ ...+-.|.-+|.+.|++++|.+.++.+.+.
T Consensus        32 ~~s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~-p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~i  102 (124)
T d2pqrb1          32 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEA-ESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH  102 (124)
T ss_dssp             GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHC-GGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             CCCcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcC-chhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcc
Confidence            456666666666666554   4567888888877653 223 245556677788888888888888888875

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=88.38  E-value=2  Score=27.28  Aligned_cols=79  Identities=10%  Similarity=-0.082  Sum_probs=53.8

Q ss_pred             HHHHHC-CCCCCHHHHHHHHHHHHcc---CCHhHHHHHHHHHHhCCCCCCh-hhHHHHHHHHHcCCCHHHHHHHHHhchh
Q 036275           98 NQMHKS-GLKPDTFVINSMLNLYGRL---GQFEKMEEVLTAMEKGSYAADI-STYNILINIYGRGGFIEKMEGLFQSLPA  172 (271)
Q Consensus        98 ~~m~~~-~~~~~~~~~~~li~~~~~~---g~~~~a~~~~~~m~~~~~~~~~-~~~~~li~~~~~~g~~~~a~~~~~~m~~  172 (271)
                      ++.... +..|+..|--...-++++.   .+.++++.+++++.+.+ +.+. ..+-.|.-+|.+.|++++|.+.++.+.+
T Consensus        23 ~q~~~e~~~~~s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~-p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~  101 (124)
T d2pqrb1          23 QQVVSEGGPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEA-ESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE  101 (124)
T ss_dssp             HHHHHTTGGGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHC-GGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHhCCCCCcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcC-chhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHc
Confidence            344444 2345666654555555555   45678899999888753 3343 5666788889999999999999999887


Q ss_pred             CCCCCCH
Q 036275          173 KRLKPDV  179 (271)
Q Consensus       173 ~g~~~~~  179 (271)
                      .  .|+.
T Consensus       102 i--eP~n  106 (124)
T d2pqrb1         102 H--ERNN  106 (124)
T ss_dssp             H--CTTC
T ss_pred             c--CCCc
Confidence            6  4553

>d2nsza1 a.118.1.14 (A:322-450) Programmed cell death 4, PDCD4 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: MIF4G domain-like
domain: Programmed cell death 4, PDCD4
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=83.26  E-value=3.9  Score=26.00  Aligned_cols=69  Identities=10%  Similarity=0.177  Sum_probs=41.4

Q ss_pred             hHHHHHHHHHcCCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCCH--HHHHHHHHHHHHCCCCCCHH
Q 036275          146 TYNILINIYGRGGFIEKMEGLFQSLPAKRLKPDVVTWTSRLAAYSRKKLY--RRCLEIFEEMIDAGCYPDGG  215 (271)
Q Consensus       146 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~--~~a~~~~~~m~~~~~~p~~~  215 (271)
                      -...++.-|...|+.++|...++++...... ....+..+..+.-+.+.-  +.+.+++..+...|+-+...
T Consensus         9 k~~~ll~EY~~~~D~~Ea~~~l~eL~~p~~~-~e~V~~~i~~ale~~~~~r~~~~~~Ll~~L~~~~~is~~~   79 (129)
T d2nsza1           9 EIDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQ   79 (129)
T ss_dssp             HHHHHHHHHHHHCCHHHHHHHHHHHTCGGGH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHH
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHcCCchhh-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHCCCCCHHH
Confidence            3567888888889999998888887532111 123333344444444443  23566788888777554443